BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780891|ref|YP_003065304.1| hypothetical protein
CLIBASIA_03940 [Candidatus Liberibacter asiaticus str. psy62]
         (215 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|94263431|ref|ZP_01287244.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93456161|gb|EAT06300.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 569

 Score =  148 bits (374), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 22/233 (9%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
           + +   +  S  + A+  + + I H+  +P+ AI  S +LL     E   +++++Q+I  
Sbjct: 327 RAMEARIRQSEKMAAVGEMAAGIAHEFRNPLAAISGSTQLLAQRLKEQPGQEQLLQIINR 386

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGE 107
                   +    L             L          I Q             +     
Sbjct: 387 ECDRLEAAVNDFLLFSRPASPRPQWHHLQQLLDESLAVIRQTPAWSQQHRFTWDLPADPM 446

Query: 108 KIDLSRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                 +  ++L+NL   A  ++                       +  +  +G     P
Sbjct: 447 VWADGDQLKQVLINLLANACQAMPSGGTIHGAAHRRQPGDGQSPGLVIEISDDGPGI-AP 505

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    +  D   +    V  +   +   +            + LL 
Sbjct: 506 ESQARIFEPYFTTRQDGTGLGLAIVHQIIKGHGGEIELASTPGQGTTFTILLP 558


>gi|262197999|ref|YP_003269208.1| multi-sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262081346|gb|ACY17315.1| multi-sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 582

 Score =  144 bits (364), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 68/226 (30%), Gaps = 13/226 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M + +      + +V  L + + H+I +P+ AI  S+ELL            +M ++   
Sbjct: 355 MERQMR-RAERLAVVGTLAAGVAHEIRNPLAAISGSIELLQTMPSVDEDNRMLMDIVTRE 413

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
                  ++ +                 ++ +        D+  +              +
Sbjct: 414 IERLDNLIRDLLDYTNPRPRELLGFDAAELVRETVQVFEQDRSFERVSLRAVALEVAPVV 473

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++L NL   A  +       T+         +  +  +G+     E   +I D
Sbjct: 474 ADPGQIRQVLWNLLRNAAEAARSVVTATVRCDSQPALVVIEVDDDGDGI-ASENLERIFD 532

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +  +   +       +  E+   +  E +       S +L +
Sbjct: 533 PFFTTKSEGSGLGLATCHSIVREHGGDIRAENLPGGGTRFSVILPR 578


>gi|315647531|ref|ZP_07900633.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315276970|gb|EFU40311.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 520

 Score =  144 bits (363), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 64/224 (28%), Gaps = 11/224 (4%)

Query: 1   MAKNIC-FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSM 58
           M           M +V  L + + H+I +P+ +I   ++L            ++I     
Sbjct: 296 MRSQEEILRTEKMKMVGELAAGMAHEIRNPLTSIKGFIQLSKNQSYNIQPWYEVIMGEIT 355

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKID 110
                            S   +  L D    +      +                   + 
Sbjct: 356 RVGELTAEFLHFSKPHASNMKVESLTDCMTRVYSLCESEAASHGHLFTLDLSDDPIHIVM 415

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++L+NL   +  ++   G V IS++  +   +  ++  G      E   +I D 
Sbjct: 416 DRDKIIQVLINLIRNSFQAMEHTGTVRISLEAVEALAVVRVEDTGKGI-ADENLAKIFDP 474

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  ++  R+  +         +  + 
Sbjct: 475 FYTTKEEGTGLGLSLCQKIVEDHGGRITVQSELGKGTTFTLRIP 518


>gi|121534574|ref|ZP_01666396.1| histidine kinase [Thermosinus carboxydivorans Nor1]
 gi|121306826|gb|EAX47746.1| histidine kinase [Thermosinus carboxydivorans Nor1]
          Length = 542

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 66/221 (29%), Gaps = 12/221 (5%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAI 61
               L  +  V  L + I H+I +P+ ++   ++L+    +  +  + +++I        
Sbjct: 301 EAVRLERLASVGQLAAGIAHEIRNPLTSVKGFIQLIMARGDRPVPRDYLEIILTEIERIE 360

Query: 62  IRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++             F        L  +  + +       V                 
Sbjct: 361 KLIREFHLLARPPQTPQFALLNLRVVLHDVVLLMESQALSKNVALEFMPGEDVTVCGDVS 420

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  ++ +NL   A  + P+GG V I+++   N  + ++  NG      +    +      
Sbjct: 421 QLKQVWINLLRNAIEAAPQGGSVDIALRADGNWAVVTVTDNGPGI-PEDILPHLGTPFFT 479

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  D   +       +   +   +            +  L 
Sbjct: 480 TKQDGTGLGLSVCYSIVQNHGGNIRVNSRPGEGATFTVQLP 520


>gi|55981112|ref|YP_144409.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772525|dbj|BAD70966.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 963

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   L +  L     + + H++ +P+ AI    ELL +  +  E  + + L   SA   
Sbjct: 726 DLRPRLEAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPLPPEAQESVELILESAFRL 785

Query: 64  LKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                              ++         L+ L    Q +     V+ RV+V       
Sbjct: 786 KNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVEELPLME 845

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++ NL   A    P GG V +       E    ++  G      E       
Sbjct: 846 VDPDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEEVWVEVQDTGPGIPKEEIPRLFQR 905

Query: 170 GNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    +  +    +   +  R+  E  +    +   +L 
Sbjct: 906 YARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRVILP 955


>gi|149917201|ref|ZP_01905701.1| multi-sensor signal transduction histidine kinase [Plesiocystis
           pacifica SIR-1]
 gi|149822117|gb|EDM81510.1| multi-sensor signal transduction histidine kinase [Plesiocystis
           pacifica SIR-1]
          Length = 566

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 71/228 (31%), Gaps = 14/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L AL  L + + H++ +P+ AI    ELLD +   DE  +LIR+   
Sbjct: 338 LREMERVLRRSERLAALGGLAASVAHEVRNPLAAISGCAELLDTLDANDEDRRLIRVIRR 397

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKID 110
            ++   + +     YT          D+ Q           D       + +      + 
Sbjct: 398 ESVRLNEIVTELLDYTRPRKLERAPVDLCQALRELAEAFEADPQNAAIDLALELPPTPVH 457

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              + ++I   L+        ++   G++ + V  S       ++  G      +    I
Sbjct: 458 AELDSSQITQVLWNLVRNGAQAMAHEGRLELGVVASLEFVHIHVRDQGRGIPDKDL-EHI 516

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +      I    V  +  ++   +               L K
Sbjct: 517 FEPFFSTKDGGSGIGLALVQRIVEDHGGDIEVYSRVGEGTRFMVNLPK 564


>gi|46199084|ref|YP_004751.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
 gi|46196708|gb|AAS81124.1| sensory transduction histidine kinase [Thermus thermophilus HB27]
          Length = 963

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 67/230 (29%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   L +  L     + + H++ +P+ AI    ELL +  +  E  + + L   SA   
Sbjct: 726 DLRPRLEAERLKGEFLAAVSHELRTPLAAILGLAELLRQEPLPPEAQESVELILESAFRL 785

Query: 64  LKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                              ++         L+ L    Q +     V+ RV+V       
Sbjct: 786 KNMVDNLLDTSRLEAGRFEVSRRPVHLKPLLLELARSFQGVARLSGVEFRVEVEELPLME 845

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++ NL   A    P GG V +       E    ++  G      E       
Sbjct: 846 VDPDRIVQVVGNLLANAFKFTPPGGSVRLWAGVRGEEVWVEVQDTGPGIPKEEIPRLFQR 905

Query: 170 GNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    +  +    +   +  R+  E  +    +   +L 
Sbjct: 906 YARAKHPGVRGVAGTGLGLFISKHIVEAHGGRIEVESEEGKGSLFRVILP 955


>gi|297568937|ref|YP_003690281.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924852|gb|ADH85662.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 576

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 20/232 (8%)

Query: 1   MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           + +++   +  S  + A+  + + + H+  +P+ AI  S +LL     +   +++++ +I
Sbjct: 344 LIRDMEARVRQSEKMAAVGEMAAGVAHEFRNPLAAISGSTQLLAQRLQKQPGQEKLLAII 403

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------T 105
                     +K   L           + L ++ +     I                   
Sbjct: 404 TRECDRLEAAIKNFLLFCRPATPRKQWVNLYELWEECIGLIRQTPDCTERHRLVGKMPPD 463

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
            E      +  ++LLNL   A  ++P              ++++     L+  G     P
Sbjct: 464 LEVWADREQLRQVLLNLVSNACQAMPEGGELSCTAENFQSENESGVRIRLQDQGKGI-SP 522

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   +I +    +  +   +    V  +   +  R+            +  L
Sbjct: 523 EDRERIFNPYFTTRQEGTGLGLAIVHQIIAGHGGRIRVASSLGQGTTFTVEL 574


>gi|197118651|ref|YP_002139078.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088011|gb|ACH39282.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 661

 Score =  142 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           + +     L    L A+  L + + H+I +P+  I  + ELL     E     E +  I 
Sbjct: 426 LVQTREELLRVEKLAAIGELAAGVAHEINNPMAIIRGNTELLQLSVPEEAPIREEVDTIF 485

Query: 55  LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106
                        LKF R      G+V     L +I   I   +++++            
Sbjct: 486 QQVKRVERIVSNLLKFARREQMEAGAVRLNELLHEIVGQIGHQVSLERIEIAEQYAESVA 545

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKF 164
           +    + +  ++  NL + A  ++P GG +++  Q  +    + +K    G      E  
Sbjct: 546 QVEGDADQLRQVFTNLVLNAVQAMPSGGVLSVRTQQVEPAGSYEVKVGDTGVGIAL-ENL 604

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q+ +    +  +   +       +  E+  R+  E +       + +L +
Sbjct: 605 RQVFNPFYTTKANGTGLGLSVSYGIVREHGGRIDVESVPGGGSTFTVVLPR 655


>gi|253574616|ref|ZP_04851957.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846321|gb|EES74328.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 565

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 73/216 (33%), Gaps = 11/216 (5%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLIRLSSMS 59
           +  + LV  + + I H+I +P+  +   L+L+ E              E +         
Sbjct: 349 VERLSLVGQMAAGITHEIRNPMAVVRGFLQLMREKSPPTLDHYYRIVMEELDRANGIIND 408

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAKI 118
            +   +   +        D +  L  +     +       V++  +  ++   ++E  ++
Sbjct: 409 FLSLAQNRPVESEKCHLHDIIKELTPLLWADANLRGQTIEVKLDDSMPELLLNAKEIKQL 468

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +LNL   A  ++   G++T+  + +    +  +   G      ++  ++ +    +    
Sbjct: 469 ILNLSRNAMEAMAEKGQLTLETRVTDQGGLLVVSDTGPGIPSGQR-EKLFEPFFTTKAKG 527

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +     + +   +  ++  +  +      + L  
Sbjct: 528 TGLGLALCLSIVERHGGKITVDSTEGQGTTFTVLFP 563


>gi|310640234|ref|YP_003944992.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245184|gb|ADO54751.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 579

 Score =  142 bits (358), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 71/223 (31%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLI 53
           ++   N   + LV  + + I H+I +P+  +   L+L+ E   +          E +   
Sbjct: 339 RSELGNFERLSLVGQMAAGITHEIRNPMAVVRGFLQLMREKSPDSLSHYYRIVMEELDRA 398

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LS 112
                  +   +   +        D +  L  +     +       +++      +    
Sbjct: 399 NGIINDFLSLAQNRIVEKEQCHLHDIIRELTPLLWADANLRGQTIELKLEDHVTMLHLNP 458

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +E  ++LLNL   A  ++   G +TIS  + ++     ++  G      +   ++     
Sbjct: 459 KEIKQLLLNLSRNAMEAMGEKGVLTISTHEEEDFVELEVRDTGPGIPPKQL-EKLFQPFY 517

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +       +   +   +  + ++         L +
Sbjct: 518 TTKTKGTGLGLALCQSIVERHHGTIAVDSVEGMGTQFKVRLRR 560


>gi|39995881|ref|NP_951832.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982645|gb|AAR34105.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|298504895|gb|ADI83618.1| sensor histidine kinase, HAMP domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 674

 Score =  142 bits (357), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           + K     + +  L    +L + + H+I +P+  I  + ELL     +     E +  I 
Sbjct: 431 LVKTQEDLVRAAKLADIGMLAAGVAHEINNPMAIIRGNAELLQMALPDEDPNREEVDTIA 490

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                    +  +                       L  +   +       ++       
Sbjct: 491 QQVGRVERIIGSLLKFARQQQRRLGTVSLPPLLDDILKQMGHQVPLTRIEIRKAYAVDLP 550

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKF 164
                  +  ++  NL + A  ++P GG +T++    +       S+   G     PE  
Sbjct: 551 PLAGDPDQLRQVFTNLVLNAIQAMPDGGSLTVATARDEEAGTCTVSVSDTGRGI-APENL 609

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I      +  +   +       +  ++   +L E  +        +L 
Sbjct: 610 KRIFSPFFTTKSEGTGLGLSVSYGIVKDHGGNILVESTEGEGTTFRVVLP 659


>gi|329923349|ref|ZP_08278833.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
 gi|328941441|gb|EGG37733.1| diguanylate cyclase (GGDEF) domain protein [Paenibacillus sp. HGF5]
          Length = 521

 Score =  142 bits (357), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 64/224 (28%), Gaps = 11/224 (4%)

Query: 1   MAKNICF-NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSM 58
           M           M +V  L + + H+I +P+ +I   ++L            ++I     
Sbjct: 296 MRSQEEMIRTEKMKMVGELAAGMAHEIRNPLTSIKGFIQLSKNQSYNIQPWYEVIMGEIT 355

Query: 59  SAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKID 110
                                V+SL         + +  A                  + 
Sbjct: 356 RVGELTAEFLHFSKPHASNMRVESLTDCMTRVYSLCESEAASHGHVFLLDLSDEPIHIVM 415

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++L+NL   +  ++   G V IS++  +   +  ++  G      E   +I D 
Sbjct: 416 DRDKIIQVLINLIRNSFQAMENTGSVRISLKADEGMAVVQIEDTGKGI-ADENLAKIFDP 474

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  ++  R+            +  + 
Sbjct: 475 FYTTKEEGTGLGLSLCQKIVEDHGGRITVHSELGIGTTFTLRIP 518


>gi|39996065|ref|NP_952016.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982830|gb|AAR34289.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 655

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 57/231 (24%), Gaps = 19/231 (8%)

Query: 2   AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
            +N            + +L  L S + H+I +P+G I      L+    E     + +  
Sbjct: 420 RQNKEMEASLAQQGKMASLGVLSSGVAHEINNPLGVILGYASYLESKITEEDPTYKYIHE 479

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107
           I+  S      ++ +               + D+                  V   +  +
Sbjct: 480 IKRESKRCKKIVQDLLSYARTPKPALEPTDINDLLGQIVGFAANHTDMHHVTVVREFAPD 539

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +  +I      +   +             +  D +          G      E 
Sbjct: 540 LPPVMADGDQIRQVAINLILNAGSAMTAGGVLTVRTFLDQEQYVNIVFSDTGCGI-PRED 598

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +       +   +  R+  +        ++  L 
Sbjct: 599 QERIFEPFFTTKTKGTGLGLAITRQIVEMHHGRIAIDSEVGRGTDVTVRLP 649


>gi|317127293|ref|YP_004093575.1| histidine kinase [Bacillus cellulosilyticus DSM 2522]
 gi|315472241|gb|ADU28844.1| histidine kinase [Bacillus cellulosilyticus DSM 2522]
          Length = 577

 Score =  141 bits (354), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQ 51
            +N    + S  +     L + I H++ +P+ AI    ++L +     E         + 
Sbjct: 344 KENENLMIRSEKMNIAGELAASIAHELRNPLTAIKGFFKMLRDTEKYKERYFQIIEDELS 403

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKID 110
            I   S   +   K           V+ +  +  +     +   ++  ++VS        
Sbjct: 404 RIEQISSELLTLAKPHTEKRQDQNIVNLIEEVKFLLSSQSNMKCIEVILEVSSNELYVNC 463

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++ +NL   A  ++  GG + I V+   N     +  +G+     E  ++I + 
Sbjct: 464 EVTKIKQVFINLVKNAIEAMQEGGNIKIKVERIGNIIQAKVIDHGSGI-PEELLSKIGEP 522

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      I       +   +   +  +   +     +  L 
Sbjct: 523 FYTTKEKGTGIGLMVCYQIIESHGGTIHFDSKVNIGTTFTITLP 566


>gi|229541292|ref|ZP_04430352.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325712|gb|EEN91387.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 358

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 69/214 (32%), Gaps = 10/214 (4%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAIIRLKFMR 68
             + +V  L + I H+I +P+ +I   L+L+    I+    + +++       +    + 
Sbjct: 132 EQLSMVGQLAAGIAHEIRNPLTSIKGFLQLMQAGVIDTGNYLDIMQNEIERIEMISSELL 191

Query: 69  L--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                                 L  +E          + V  S          +  ++ +
Sbjct: 192 FLGRPKASDMKVCCLQTLLDEVLVLMETQSYGKNIQIETVFPSQPIFISCDDSKMKQVFV 251

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL      ++  GG +T+ +  ++     +++  G     PEK  +I      +    + 
Sbjct: 252 NLIKNGLEAMEEGGTLTVELSVAEERAAVAIRDEGIGI-PPEKLEKIGQPFYTTKERGNG 310

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +  E+   +  +       V + +L 
Sbjct: 311 LGLMVCYQIVREHNGDISIDSKPGEGTVFTVVLP 344


>gi|300087415|ref|YP_003757937.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527148|gb|ADJ25616.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 506

 Score =  141 bits (354), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQ 51
           A      L S       L ++  L + + H+I +P+  I    E L     +D++   ++
Sbjct: 260 AAERESQLQSELNMSGRLASVGELAAGVAHEINNPLTGIIGFSERLMRKCRDDKMTTDLK 319

Query: 52  LIRLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSW 104
            I   +          L F R       SVD    L +  ++ E  +          ++ 
Sbjct: 320 RIHSEAQRAAKVVQNLLTFARQREPRKESVDINEILTESLELREYELRQLGIQVVTHLAD 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFP 161
                    +  ++ +NL + A  ++    +G ++ +S  +     + ++  NG   +  
Sbjct: 380 LPNIEADYYQLEQVFVNLIINAEQAITASGKGDRLIVSSGEMDGNIVVAVADNGPGIKPR 439

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D    +        +       +  E+  R+            + +L 
Sbjct: 440 D-QERIFDPFFTTRGDAGGTGLGLSICHGIVEEHGGRISVTSELGEGTTFTVILP 493


>gi|298505082|gb|ADI83805.1| sensor histidine kinase, HAMP domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 655

 Score =  140 bits (353), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 57/231 (24%), Gaps = 19/231 (8%)

Query: 2   AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
            +N            + +L  L S + H+I +P+G I      L+    E     + +  
Sbjct: 420 RQNKEMEASLAQQGKMASLGVLSSGVAHEINNPLGVILGYASYLESKITEGDPTYKYIHE 479

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107
           I+  S      ++ +               + D+                  V   +  +
Sbjct: 480 IKRESKRCKKIVQDLLSYARTPKPALEPTDINDLLGQIVGFAANHTDMHHVTVVREFAPD 539

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +  +I      +   +             +  D +          G      E 
Sbjct: 540 LPPVMADGDQIRQVAINLILNAGSAMTAGGVLTVRTFLDQEQYVNIVFSDTGCGI-PRED 598

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +       +   +  R+  +        ++  L 
Sbjct: 599 QERIFEPFFTTKTKGTGLGLAITRQIVEMHHGRIAIDSEVGRGTDVTVRLP 649


>gi|134299002|ref|YP_001112498.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Desulfotomaculum reducens MI-1]
 gi|134051702|gb|ABO49673.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 578

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 69/230 (30%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +          L     + + + H+I +P+ ++    +L+       ++   + + + 
Sbjct: 345 LRRQEARIREQEKLAVVGQMAAGMAHEIRNPLTSVRGFAQLMSEKMAEEQNPYKEFMEIM 404

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTG 106
                    F+             +    + Q+                V   + +    
Sbjct: 405 IQEIDQADSFINNFLQLARPKPPKMQACSLNQLILNFIKIFESQAFLQGVKIGIDLGEIP 464

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKF 164
             +    +  ++LLNL   A  ++   G +TI+ +    + E   S++ NG      +  
Sbjct: 465 TIVIDKDQIKQVLLNLCQNALQAMNMQGTITIATRFHAAEKEVSLSVRDNGPGI-PGDNI 523

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++      +      +       +  +++ R+  E   D        L 
Sbjct: 524 DKLGTPFFTTKDKGTGLGLSISYTIVDKHQGRIEVESTIDEGTCFKVYLP 573


>gi|308067476|ref|YP_003869081.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|297185565|gb|ADI24139.1| sensor histidine kinase kin689 [Paenibacillus polymyxa]
 gi|305856755|gb|ADM68543.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 579

 Score =  140 bits (352), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLI 53
           ++   N   + LV  + + I H+I +P+  +   L+L+ E   E          E +   
Sbjct: 339 RSELGNFERLSLVGQMAAGITHEIRNPMAVVRGFLQLMREKSPESLNHYYRIVMEELDRA 398

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LS 112
                  +   +   +        D +  L  +     +       +++      +    
Sbjct: 399 NGIINDFLSLAQNRIVEKEQCHLHDIIRELTPLLWADANLRGQTIELKLEDHVTMLHLNP 458

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +E  ++LLNL   A  ++   G +TIS  +  +     +K  G      +   ++     
Sbjct: 459 KEIKQLLLNLSRNAMEAMGEKGVLTISTHEEGDFVELEVKDTGPGIPQKQL-EKLFQPFY 517

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +       +   +   +  + ++      +  L +
Sbjct: 518 TTKTKGTGLGLALCQSIVERHHGTIAVDSVEGMGTQFNVRLRR 560


>gi|261406771|ref|YP_003243012.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261283234|gb|ACX65205.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 520

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICF-NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSM 58
           M           M +V  L + + H+I +P+ +I   ++L            ++I     
Sbjct: 296 MRSQEEMIRTEKMKMVGELAAGMAHEIRNPLTSIKGFIQLSKNQSYNIQPWYEVIMGEIT 355

Query: 59  SAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKID 110
                                V+SL         + +  A                + + 
Sbjct: 356 RVGELTAEFLHFSKPHASNMRVESLSDCMTRVYSLCESEAASHGHVFLLDLSDEPIQIVM 415

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++L+NL   +  ++   G V IS++  +   +  ++  G      E   +I D 
Sbjct: 416 DRDKIIQVLINLIRNSFQAMENTGSVRISLKAEEGMAVVQIEDTGKGI-ADENLAKIFDP 474

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  ++  R+            +  + 
Sbjct: 475 FYTTKEEGTGLGLSLCQKIVEDHGGRITVHSELGIGTTFTLRMP 518


>gi|121533649|ref|ZP_01665476.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thermosinus carboxydivorans Nor1]
 gi|121307640|gb|EAX48555.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thermosinus carboxydivorans Nor1]
          Length = 399

 Score =  139 bits (351), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 18/230 (7%)

Query: 3   KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQL 52
           + +   +  ++ L AL  L +   H+I +P+ +I    +L+        +    D    +
Sbjct: 144 REVRHRMHHLETLAALGQLAAGTAHEIRNPLTSIRGFTQLIQTRALRRNDATTADYCRLI 203

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------ 106
           ++       I    + LA   T  +  L  +  +  VI           ++         
Sbjct: 204 MQEIDHINNILTDILSLARPTTRQLSLLNIVKIVHDVIAFMYGEAILSGITLRPELPPEE 263

Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  ++L+N+   A  ++  GG +T+SV          L   G      E   
Sbjct: 264 LWVQGHIDKLKEVLINICRNAFQAMGPGGVLTLSVAADTATVKIVLADTGCGM-TKEVMD 322

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           QI      +      +       + HE+   +  E         + LL +
Sbjct: 323 QIFTPFFTTKETGTGLGLAICQQIMHEHGGDIQVESTPGQGSTFTLLLPR 372


>gi|153006988|ref|YP_001381313.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            sp. Fw109-5]
 gi|152030561|gb|ABS28329.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            sp. Fw109-5]
          Length = 1519

 Score =  139 bits (350), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 73/227 (32%), Gaps = 14/227 (6%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
            + +     +    L AL  L + + H++ +P+G I NSL     LL   G    ++ ++ 
Sbjct: 1280 LGRAQRQLIQQERLAALGELSAVVAHEVRNPLGVIFNSLGSLRRLLRPAGDAKLLLDIVG 1339

Query: 55   LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +          L F R +            + +              V      E   
Sbjct: 1340 EEADRLNRIVGDLLDFARPSDPQLRPERLERVVEEAIHTALAQNPQGVEVSRDVDPELPA 1399

Query: 111  LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +  +     + ++N+ + A  ++PRGG++T+ V+         ++  G      E   +I
Sbjct: 1400 VPIDARLVRQAVINVAVNAIQAMPRGGRLTVRVRREDGTAALDVEDTGPGI-PDEVKHRI 1458

Query: 168  VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +      +    V  +   +   L+         +    L 
Sbjct: 1459 FEPFFTTKASGTGLGLAVVKRIVDGHGGELVVHSRPGAGTLFRIRLP 1505


>gi|253700606|ref|YP_003021795.1| histidine kinase [Geobacter sp. M21]
 gi|251775456|gb|ACT18037.1| histidine kinase [Geobacter sp. M21]
          Length = 672

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 19/231 (8%), Positives = 58/231 (25%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + +       +  L    ++ + + H+I +P+  I  + E+L+          E + +I 
Sbjct: 427 LLQTQADLARAEKLADLGIVAAGVAHEINTPLAIIRGNAEVLEMCLPPEHPNHEEVDIIS 486

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKI 109
           + +      +  +               + +I      Q+          VQ  +     
Sbjct: 487 MQTERMAKIVGNLLTFARQKSLNQREFMVHEILDDIVAQIRHQVPMDAISVQWEYDMNLG 546

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLARFPEK 163
            +  +  ++      +   ++            T       N     ++  G      E 
Sbjct: 547 TVIGDTDQLRQVFSNIILNAVQAMLPKGGTLRLTTRPHGPGNGCEVEIRDTGKGI-PAEH 605

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I      +      +       +  ++   +               L 
Sbjct: 606 LEKIFTPFFTTRDSGTGLGLSVSYGIVRDHGGDIQVSSTPGAGTCFKIFLP 656


>gi|295696526|ref|YP_003589764.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
 gi|295412128|gb|ADG06620.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
          Length = 467

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 68/231 (29%), Gaps = 19/231 (8%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
            +   LS   +    L + + H++ +P+  I   LEL+ +     E E +  I+   M  
Sbjct: 215 EMALQLSRIEETRRHLVADVAHELRTPLTIIQGQLELIQQGVKRAEPETLLPIQDEVMRL 274

Query: 61  IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +  +                +T        + D  Q+  +   +   ++ S +    
Sbjct: 275 TRLVGDLHQLSLAEAGRLPLEKTWTDLTALAGRIVDNFQIEAEAKEITLSLEASDSIPVY 334

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++++NL   A    P GG + I V+   +E I ++   G   R          
Sbjct: 335 VDPHRMTQVIVNLVGNALRYTPTGGTIRIVVRQEGSEAILAVSDTGPGIRPEHLPHIFDR 394

Query: 170 GNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                           +           +  R+  E         +  L K
Sbjct: 395 FFRSDEARSREEGGTGLGLAIAKEFVEAHGGRIGAESRPGEGTTFTVRLPK 445


>gi|197118621|ref|YP_002139048.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197087981|gb|ACH39252.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 672

 Score =  139 bits (349), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 67/231 (29%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + +       +  L    ++ + + H+I +P+  I  + E+L+          E +++I 
Sbjct: 427 LLQTQADLARAEKLADLGIVAAGVAHEINTPLAIIRGNAEVLEMCLPPEHPNHEEVEIIS 486

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-- 112
           + +      +  +               + +I   I   I     +       + D++  
Sbjct: 487 MQTERMAKIVGNLLTFARQKSLNQREFMVHEILDDIVTQIRHQVPMDAISVQWEYDMNLG 546

Query: 113 ------RERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +  ++  N+ + A  ++   G   ++T       N     ++  G      E 
Sbjct: 547 AVTGDTDQLRQVFSNIILNAVQAMLPEGGTLRLTTRPHGPGNGCEVEIRDTGKGI-PAEH 605

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I      +      +       +  ++   +              +L 
Sbjct: 606 LEKIFTPFFTTRDSGTGLGLSVSYGIVRDHGGDIQVSSTPGAGTCFKIVLP 656


>gi|308270670|emb|CBX27281.1| hypothetical protein N47_I07010 [uncultured Desulfobacterium sp.]
          Length = 488

 Score =  138 bits (348), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 69/230 (30%), Gaps = 20/230 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           M K++   L    L ++  L + + H+I +P+  I  +  L    L++     + + ++ 
Sbjct: 257 MQKSM---LQQDKLASIGRLAAGVAHEINNPLTTILTTAMLIQEDLEKDNPIYQELDIVS 313

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKI 109
             ++     +  +      +        + +I +       +     +  +  S      
Sbjct: 314 SETLRCRKIVTSLLNFARQSKPEKKQYDICEIMEECALLTRKQAAFKNITIHFSCVDSIP 373

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKF 164
            L  ++ +I   +  +   +                   K++ I  +   G      E  
Sbjct: 374 KLFFDKGQIEQAVINLILNATDAVDPGGSITLSVSLNPKKDQVIIKVADTGKGI-PFELI 432

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +  D   +       +  ++   +       +    + +L 
Sbjct: 433 DKIFDPFFSTKDDGTGLGLSITSGIIEQHGGAIYVSSKPGYGTTFTIVLP 482


>gi|218289066|ref|ZP_03493303.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240891|gb|EED08069.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 457

 Score =  138 bits (347), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 69/228 (30%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       +  +  +  L + + H+I +P+  I   L+LL++     +++  I    M  
Sbjct: 217 LLNQHTERIERIATIGRLAAGVAHEIRNPLTTIKGFLQLLEQRLERADMLDEIAYIRMMM 276

Query: 61  II-------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                            K   +A+      + L  L            V+   +V    E
Sbjct: 277 QEIERVNALVTELLLLSKPQDMAWTTVSVSEVLGHLRPWLDEEARKRGVETVYEVPADLE 336

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++  +L   A  ++ +GG++TI  +  +          G    +   F +I
Sbjct: 337 LQADRGMMEQLFAHLARNAIEAMEKGGRLTIRGRAEEGRVELEFSDTGPGIPYY-LFDRI 395

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D    +      +       +  ++  ++            +  L K
Sbjct: 396 FDVFYTTKEKGTGLGLAICQRIVADHGGQIRV-SSKGFGTTFTVSLPK 442


>gi|226314530|ref|YP_002774426.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226097480|dbj|BAH45922.1| probable two-component sensor histidine kinase [Brevibacillus
           brevis NBRC 100599]
          Length = 606

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 14/223 (6%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
             +   S  L     L +   H+I +P+  I+  ++LL+    +   +   + LI     
Sbjct: 379 QEYLNQSEKLAMVGQLAAGAAHEIRNPLTVIYGFIQLLEQRLSDQERDLYYLPLILQEIE 438

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDL 111
                +  + +    +      + L  +   I   +  +  +           +      
Sbjct: 439 RVNRIVTELLMLSKPSKPDYREVALTGVIHSILPLMNAEAMLHGIEIVDRCDPSIRIHVD 498

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  +ILLNL   +  ++  GG ++I  +         ++  G      E   +I D  
Sbjct: 499 VEQLKQILLNLMKNSIEAMKDGGVLSIENRLDDQAVHIHVRDTGEGI-PQEYLVRIFDPF 557

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                D   +       +   +   L           +   L 
Sbjct: 558 FSLKEDGTGLGLPISRRMVENHGGELHVNSKLGKGTEIIITLP 600


>gi|260892097|ref|YP_003238194.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ammonifex degensii KC4]
 gi|260864238|gb|ACX51344.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ammonifex degensii KC4]
          Length = 621

 Score =  138 bits (347), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 71/226 (31%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS 57
            + +   +     L AL    + + H+I +P+  I   +++           + L+    
Sbjct: 381 RRRLEERVQRQERLAALGKFVAGVAHEIRNPLTTISGYIQMWQRYGKPTPHSLPLVAQEV 440

Query: 58  MSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--- 110
                     L F R A       D    +  + Q I        +V+VS + E      
Sbjct: 441 RRLNAIVDKLLFFARPAEMKLQPYDLNQLVVQVLQFIGHAQDNKVKVEVSLSPELPTVLL 500

Query: 111 LSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++L+N+   ++ ++P GG   V+  +       + ++   G     PE   +I 
Sbjct: 501 DPEQMRQVLMNIIYNSYQAMPNGGLLSVSTELTSDGKYAVVTVGDTGCGI-PPENLPRIF 559

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   +  E        +   L 
Sbjct: 560 DPFFTTKARGSGLGLALAHEIVTAHGGHIEVESKVGVGTTMRVYLP 605


>gi|253701298|ref|YP_003022487.1| histidine kinase [Geobacter sp. M21]
 gi|251776148|gb|ACT18729.1| histidine kinase [Geobacter sp. M21]
          Length = 656

 Score =  137 bits (346), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
           K +  NL     + +L  L S + H+I +P+G I      +++           +  I+ 
Sbjct: 423 KELEANLAQQGKMASLGVLSSGVAHEINNPLGVILGYAAYIEKKLSPDDPNYRFIHEIKR 482

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110
            S      ++ +         V     L  + + I              V+ S+     +
Sbjct: 483 ESKRCKKIVQDLLSYARTPQPVLEPTDLNALLEQIVDFAANHTDMHHVSVEKSFDPTLPE 542

Query: 111 LSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +  ++      +   +     +    V  +     N        NG      E   +
Sbjct: 543 IMVDGDQLRQVAINLILNAGAAMQRGGKLVVSTQNGEDNCVSLKFSDNGAGI-AAEHMER 601

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    + +    +       +  ++  ++  E        +   L 
Sbjct: 602 IFEPFFTTKVKGTGLGLAITRQIVEQHHGKIGIESEIGAGTTVEVRLP 649


>gi|313903520|ref|ZP_07836911.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313466341|gb|EFR61864.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 325

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVM 50
            +     L    S  L A+  L +   H+I +P+ AI   ++LLD        G  D V+
Sbjct: 54  TQERELELRARRSERLAAVGQLAAGAAHEIRNPLTAIKGFIQLLDRRLEGEAAGYIDIVL 113

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106
           Q I          L   R        VD    L  +  +I    A    V          
Sbjct: 114 QEIERIETIVNDLLLLARQPRLRLRRVDVGALLQRLVDMIRLDQAARSCVVELRVREPLP 173

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKF 164
             +    +  ++ LNL      ++P GG + I    +      +  ++  G     PE  
Sbjct: 174 PVVADESQLRQVFLNLIRNGLDAMPEGGCLQIRAFANPAAGTVVVEVEDRGPGI-PPEHL 232

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +      +       +   +   +  E        +  +L 
Sbjct: 233 GRIFDPFFSTKEGGTGLGLAVSYGIVRSHGGHIDVESEPGRGTRMRVVLP 282


>gi|197117910|ref|YP_002138337.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197087270|gb|ACH38541.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 656

 Score =  137 bits (346), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
           K +  NL     + +L  L S + H+I +P+G I      +++           +  I+ 
Sbjct: 423 KELEANLAQQGKMASLGVLSSGVAHEINNPLGVILGYAAYIEKKLSPDDPNYRFIHEIKR 482

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110
            S      ++ +         V     L  + + I              V+ S+     +
Sbjct: 483 ESKRCKKIVQDLLSYARTPQPVLEPTDLNALLEQIVDFAANHTDMHHVSVEKSFDPSLPE 542

Query: 111 LSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +  ++      +   +     K    V  +     N        NG      E   +
Sbjct: 543 IMVDGDQLRQVAINLILNAGAAMQKGGKLVVSTQNGEDNCVSLKFSDNGAGI-AAEHMER 601

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    + +    +       +  ++  ++  E        +   L 
Sbjct: 602 IFEPFFTTKVKGTGLGLAITRQIVEQHHGKIGIESEIGAGTTVEVRLP 649


>gi|322419500|ref|YP_004198723.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125887|gb|ADW13447.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 668

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 60/231 (25%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +A+       +  L    ++ + + H+I +P+  I  + E+L+          E +++I 
Sbjct: 427 LAQTQADLARAEKLADLGIVAAGVAHEINTPLAIIRGNTEVLEMCLPSDHPNHEEVEIIS 486

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKI 109
             +      +  +               + ++      Q+          VQ  +     
Sbjct: 487 EQTERMAKIVGNLLTFARQKSLNQRQFVVHEVLDDIVAQIRHQVPMDAISVQWEYDLNLG 546

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLARFPEK 163
            ++ +  ++      +   ++                    N  I  +   G     PE 
Sbjct: 547 RVTGDTDQLRQVFSNIILNAVQAMLPQGGTLRLITRPHGPGNGCIVQICDTGKGI-SPEH 605

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I      +      +       +  ++   +               L 
Sbjct: 606 QEKIFTPFFTTKESGTGLGLSVSYGIVKDHGGDIRVSSRPGMGTCFEIELP 656


>gi|253700575|ref|YP_003021764.1| histidine kinase [Geobacter sp. M21]
 gi|251775425|gb|ACT18006.1| histidine kinase [Geobacter sp. M21]
          Length = 661

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +     +    L A+  L + + H+I +P+  I  + ELL     ED  +        
Sbjct: 426 LVQTREELVRVEKLAAIGELAAGVAHEINNPMAIIRGNTELLQLSVPEDAPIREEVDTIF 485

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
           Q ++         LKF R      G+V     L +I  Q+          +   +     
Sbjct: 486 QQVKRVERIVSNLLKFARREQMEAGTVRLNELLHEIVGQIGHQVSLEGIEIVEQYAESVA 545

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  +  ++      +   ++          V     + +      +   G      E  
Sbjct: 546 QVEGDADQLRQVFTNLVLNAVQAMPAGGVLSVRTRPLEPERSYEVKVADTGVGIAL-ENL 604

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q+ +    +  +   +       +  E+   +  E + D     + +L +
Sbjct: 605 RQVFNPFYTTKANGTGLGLSVSYGIVREHGGLIDVESVPDGGSTFTVVLPR 655


>gi|108762754|ref|YP_631541.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466634|gb|ABF91819.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 747

 Score =  137 bits (345), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 61/228 (26%), Gaps = 24/228 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
               L AL  + + + H+I +P+GAI  + + LD V  + E  + + +           +
Sbjct: 465 ERDRLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPVHYQGEDAEFLEVIVEEVNRLNGVV 524

Query: 68  RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                Y   +       D    +    ++I++ +  +  + V        +  +  ++  
Sbjct: 525 TAFLDYARPLKQSFGTTDLNEVVTRTMRLIQNDVPSNLHLAVELDLMLPRVDGDAEQLKQ 584

Query: 121 NLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            L  +   +                +  +               +  NG      ++   
Sbjct: 585 VLINLVQNAVQALETREGRISVRTEKPERFGELRSAGAEFVEVRVSDNGPGI-PSDQHPH 643

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       +   +   +  +            L 
Sbjct: 644 IFVPFYTTKQKGTGLGLAICQRIVKNHGGSISVQSKMGEGTTFVIRLP 691


>gi|85857964|ref|YP_460166.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85721055|gb|ABC75998.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 593

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63
            S  L A+  L + + H+I +P+ +I     +L E       +  +  ++          
Sbjct: 360 RSRRLAAIGSLAAGVAHEIRNPLSSIKGFATVLRERHRENPEDQRIADIMISEVERLNRV 419

Query: 64  LKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +  +                  I    ++ + E        ++  +     DL  +    
Sbjct: 420 IGQLLEFSRPLTMNRKDSAIEPILQHTVKMIEEQARKKGIDIRTEFPEGVPDLLIDPDKM 479

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++ LNL + A  ++  GG +++ +   +       +   G   R  E   +I D    +
Sbjct: 480 TQVFLNLSLNAVNAMDTGGTLSLKISRPEARTIRVDVADTGTGIRPDELG-RIFDPYFTT 538

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +  ++          V S  L 
Sbjct: 539 RPSGTGLGLPIAQRIVEAHGGKIAVASQQGKGTVFSVFLP 578


>gi|91204351|emb|CAJ72004.1| similar to two-component sensor histidine kinase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 769

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIR 54
            K +   L  +  L A+  L + + H+I +P+G + N ++++           E ++L+ 
Sbjct: 534 RKRMEMQLIQTERLAAVGELAAGVAHEINNPLGGLLNFVKMMSREPENISQNKEFLELMA 593

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKI 109
                  + +K +        +      +  +       +          ++        
Sbjct: 594 EGLKRIEVIVKQLMAFSRPYSTHMDNHCVNTVVRNSIRFLDHRIKEQRITLEERLFSGLP 653

Query: 110 DLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEK 163
           ++  +  +I   +  +   +L            T      K+     +   G      + 
Sbjct: 654 EIYADADQISQVIINILVNALDCMDDGGKLTIATGHCNHLKSSIHIKITDTGPGIN-DDI 712

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++I +    +      +       +  ++   +  +         S  L 
Sbjct: 713 ASRIFNPFFTTKEMGSGLGLAISKRIVEDHDGNIFVDSKPGKGTTFSICLP 763


>gi|329930884|ref|ZP_08284277.1| sporulation kinase A family protein [Paenibacillus sp. HGF5]
 gi|328934501|gb|EGG31009.1| sporulation kinase A family protein [Paenibacillus sp. HGF5]
          Length = 480

 Score =  137 bits (345), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 70/223 (31%), Gaps = 13/223 (5%)

Query: 4   NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMSA 60
                + S  L     L + I H+I +P+ +I+  ++LL      +E   ++I       
Sbjct: 257 EEDRVMQSEKLTTAGQLAAGIAHEIRNPLTSINGFVKLLRSAERSNELYFEIIESELKRI 316

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDL 111
            + +  +           +G +D    L  I  +++                        
Sbjct: 317 ELIVNELLVLSKPQGAHVSGPIDVSAILDQIITLMKVQAALKNIEIIPHYPLIPIYVQGE 376

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++ +NL   A  ++  GG +T+ +  S  E    ++  G      ++   +    
Sbjct: 377 VNQLKQVFINLLKNAMEAMNHGGSITLDIVHSGPEVQIIVQDEGVGM-TQDQIQSLGQPF 435

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       + H +   +  E   DH    +  L 
Sbjct: 436 FTTKDTGTGLGLMITKNIIHNHGGTMNVESTPDHGTTFTIHLP 478


>gi|86157053|ref|YP_463838.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773564|gb|ABC80401.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 526

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 63/227 (27%), Gaps = 16/227 (7%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
           + +      S  L  L  + + + H++ +P+ ++  S+ELL  +   + +  +L+ +   
Sbjct: 292 RTMEQAFQRSERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAAPDGDERRLLDIVLR 351

Query: 59  SAIIRLKFMRLAFGYTGSVDSLI---------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            A    + +     +                          +         +        
Sbjct: 352 EASRLDELVTEFLRFARPAPLRPGSVELSGLLDDALRVFAHDPAAVGLLVARSLDPAPAA 411

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQI 167
               +  +++ NL   A  +L  G    I V          F++  +G      E   +I
Sbjct: 412 CDPDQIRQVVWNLLRNAAQALGDGRGARIEVSCGVEDGGAWFAVGDDGPGIPAAEL-ERI 470

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +    V  +   +  R+            +  L 
Sbjct: 471 FLPFHTTKERGTGLGLAVVQRIVDAHGGRVEVRSTPGEGARFTVHLP 517


>gi|189425688|ref|YP_001952865.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189421947|gb|ACD96345.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 510

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 60/231 (25%), Gaps = 19/231 (8%)

Query: 2   AKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
            +N            + +L  L S + H+I +P+G I      L+          + +  
Sbjct: 274 QRNQEMESTLAQQGKMASLGVLSSGVAHEINNPLGVILGYAAYLEGKLSPDDPHYKYIHE 333

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107
           I+  S      ++ +            +  L ++   I              ++  +   
Sbjct: 334 IKRESKRCKKIVQDLLSYARTPRPTLEMTDLNELLTEIVEFAANHTDMRGVTIKPEFEAN 393

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +  ++      +   +     +       +    +     S +  G      E 
Sbjct: 394 LPRVLLDGDQLRQVAINLILNAGGAMPEGGTLQIRTEAGPERTVKISFQDTGCGI-PRES 452

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +       +   +   +  E        ++ +L 
Sbjct: 453 LEKIFEPFYTTKARGTGLGLAITRQIVEMHHGDITIESEAGKGTTVTVILP 503


>gi|323703046|ref|ZP_08114701.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531940|gb|EGB21824.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 582

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 72/230 (31%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56
           + +          L     + + + H+I +P+ ++    +L+ E      +   + + + 
Sbjct: 349 LRRQEARIREQEKLAVVGQMAAGMAHEIRNPLTSVRGFAQLMKEKIGEQNNPFKEYVEIM 408

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTG 106
                    F+             + +  +  +I++F+ + +             +    
Sbjct: 409 IQEIDQADSFINNFLQLARPTPPKMQVCSVNDLIKNFVRIFENQAFLQGTKVLTDLREVP 468

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKF 164
             +  S +  ++LLNL   A  +L +GG +T   S Q    E    +  NG      +  
Sbjct: 469 PLVIDSAQIKQVLLNLCQNALQALGQGGTLTLASSYQADTREIRVDVIDNGPGIPPEDL- 527

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I      +      +       +   +K R+  +         S  L 
Sbjct: 528 DKIGTPFYTTKDKGTGLGLSISYAIVDRHKGRVEVDSKVGQGTRFSIYLP 577


>gi|322418879|ref|YP_004198102.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125266|gb|ADW12826.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 656

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 68/228 (29%), Gaps = 17/228 (7%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
           K +  NL     + +L  L S + H+I +P+G I      +++         + +  I+ 
Sbjct: 423 KELEANLAQQGKMASLGVLSSGVAHEINNPLGVILGYAAYIEKKLTPEDPNYKFIHEIKR 482

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110
            S      ++ +         +     + D+ + I              V+ ++      
Sbjct: 483 ESKRCKKIVQDLLSYARTPQPLLEETDINDLLEQIVDFAANHTDMHHVTVKKNFDRTLPQ 542

Query: 111 LSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +  ++      +   +     +    V  +    +       + NG     PE   +
Sbjct: 543 VMVDGDQLRQVAINLILNAGAAMQRGGELVVSTEPGGEQWVSLKFRDNGAGI-SPEHMER 601

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    + +    +       +  ++  ++  E        +   L 
Sbjct: 602 IFEPFFTTKVKGTGLGLAITRQIVEQHHGKICIESGIGAGTTVEVRLP 649


>gi|260892433|ref|YP_003238530.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
 gi|260864574|gb|ACX51680.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
          Length = 611

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 16/226 (7%)

Query: 4   NICFNLS-----SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRL 55
                L         L +L  L + + H+I +P+ AI+  L+L  + G   ++ +  +R 
Sbjct: 373 TEQVRLQREMRRQERLASLGRLVAGVAHEIRNPLTAINCYLQLWQKSGRFPEKPLNTMRE 432

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKID 110
                   ++ +               +  + +    F      +++         E   
Sbjct: 433 EINRLDNLVEKLLCLAKPAEVKKVPYEVNRLVRDSLRFFEEVVGIRIETDFASDLPEVPL 492

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++L NLF  A  ++  GG +T+           +  +   G           I 
Sbjct: 493 DPEQMGRVLQNLFFNACEAMAGGGVLTVRTYKAGDGRHAVIEVADTGCGIPPEHLKE-IF 551

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +   +  R+  E        +   L 
Sbjct: 552 EPFFTTKPQGTGLGLSLAKEVVEAHGGRIEVESELGKGTTMRIYLP 597


>gi|148265415|ref|YP_001232121.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146398915|gb|ABQ27548.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 662

 Score =  136 bits (343), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 70/230 (30%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + K     + +  L A+  L + + H+I +P+  I  + ELL      E +  + +    
Sbjct: 430 LVKTRQDLVRAEKLAAIGELAAGVAHEINNPMAIIRGNTELLQMSIPPEADNREEVDTIF 489

Query: 58  MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
                        LKF R      G+V     L +I  QV          ++  +  +  
Sbjct: 490 QQMGRVERIVANLLKFARQEQKNLGTVFINRLLREILSQVGHQVPLSGINIREEYAPDIP 549

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKF 164
           ++  +  ++      +   ++            +  +        ++   GN     E  
Sbjct: 550 EIEGDSDQVRQVFINLVINAVQAMPGGGDLTITTGIDSEAGKCEITVTDTGNGIAL-ENL 608

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            QI +    +      +       +  ++  R+      +   +   +L 
Sbjct: 609 EQIFNPFFTTKAGGTGLGLSVSYGIIRDHGGRIEVRSEPEKGSMFRVVLP 658


>gi|297565379|ref|YP_003684351.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
 gi|296849828|gb|ADH62843.1| multi-sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
          Length = 827

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSM 58
           +++     +  + +   + + H++ +P+ AI    ELL    I      E +++I  +  
Sbjct: 587 RDVTPQKDAERIKSEFIAAVSHELRTPLAAIMGFAELLTSGEIPLEEGQEFLRIIYDNGR 646

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGE 107
                +  +             Y   V     L  +            V+   ++     
Sbjct: 647 RLKNMVDNLLDSSRLEAGRFEVYKRPVQLEETLRGVADSFTGVAQLSQVEFHREIPPLPP 706

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A    P+GG+VT+      +     ++  G      E+    
Sbjct: 707 VEADPDRIGQVMGNLLSNAFKFTPKGGRVTLRAMLEGDSLKIEVEDTGPGIPESERSRLF 766

Query: 168 VDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +    +  Y    +   +  R+  E         S  L 
Sbjct: 767 QRYGRTQSAVSRGVSGTGLGLYISKAIVEAHGGRIWVESEVGKGTTFSLTLP 818


>gi|115378951|ref|ZP_01466084.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|310818264|ref|YP_003950622.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115364027|gb|EAU63129.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391336|gb|ADO68795.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 639

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIED 47
           M +     + +  L ++  L + + H+I +P+ A+    E L            E     
Sbjct: 405 MKELEKRIIHAEKLASIGQLAASVVHEINNPMTAVATYAEALLMNARLRPNSTAEQDKLK 464

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           ++ +            + + R A      V     L       E  ++  K         
Sbjct: 465 KIRESSDRILRFTRDLVSYARPAKEKPEQVPLESILEQAVSYCEHVVSHAKVNVERDYAP 524

Query: 108 KIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +        ++ +NL   A  ++  GGKV +S +    + +  ++  G         
Sbjct: 525 LPPVSAVRANLVQVFVNLITNACHAMVSGGKVMLSTRRDGQDAVVLVRDTGTGIDPKHLG 584

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I D    +  +     +    V  +   +  R+  +       V +  L 
Sbjct: 585 -HIFDPFFTTKEEGKGTGLGLSIVQGIVESHGGRITVDSTLGEGTVFTLRLP 635


>gi|261407510|ref|YP_003243751.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261283973|gb|ACX65944.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 480

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 70/223 (31%), Gaps = 13/223 (5%)

Query: 4   NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMSA 60
                + S  L     L + I H+I +P+ +I+  ++LL      +E   ++I       
Sbjct: 257 EEDRVMQSEKLTTAGQLAAGIAHEIRNPLTSINGFVKLLRSAERSNELYFEIIESELKRI 316

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDL 111
            + +  +           +G +D    L  I  +++                        
Sbjct: 317 ELIVNELLVLSKPQGAHVSGPIDVSAILDQIITLMKVQAALKNIEIIPHYPLVPIYVQGE 376

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++ +NL   A  ++  GG +T+ +  S  E    ++  G      ++   +    
Sbjct: 377 VNQLKQVFINLLKNAMEAMNDGGSITLDIVHSGPEVQIIVQDEGVGM-TQDQIQSLGQPF 435

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       + H +   +  E   DH    +  L 
Sbjct: 436 FTTKDTGTGLGLMITKNIIHNHGGTMNVESTPDHGTTFTIHLP 478


>gi|322419476|ref|YP_004198699.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125863|gb|ADW13423.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 662

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 73/231 (31%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           + +     L    L A+  L + + H+I +P+  I  + ELL     E     E +  I 
Sbjct: 431 LVQTREELLRVEKLAAIGELAAGVAHEINNPMAIIRGNTELLQLCVPEDAPNREEVDTIF 490

Query: 55  LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106
                        LKF R      G V     L +I   +   ++++    V        
Sbjct: 491 QQVKRVERIVSNLLKFARREQMEHGDVRLNELLHEIVGQLGHQVSLEGIEVVELYAGEVA 550

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKF 164
                  +  ++  NL + A  ++P GG + I      +       +   G      E  
Sbjct: 551 VVEGDGDQLRQVFTNLVLNAVQAMPEGGVLCIKSAPVGSGDLYEVKVSDTGVGIEL-ENL 609

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q+ +    +  +   +       +  E+   +  E +       S +L +
Sbjct: 610 RQVFNPFYTTKANGTGLGLSVSYGIVREHGGCIDVESVPGQGSSFSVILPR 660


>gi|187734822|ref|YP_001876934.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187424874|gb|ACD04153.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 383

 Score =  136 bits (342), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 72/233 (30%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIR 54
           K    NL +  L AL  L + + H+I +P+ +I   L+LL     +       ++ +L++
Sbjct: 138 KKNAENLEAERLNALTLLAAGVAHEIGNPLNSIGLHLQLLARKAKQLPPKYRTDMEELLK 197

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED--------FIAVDKRVQVSWTG 106
            +          ++           +    +IE ++ +              ++      
Sbjct: 198 TAESETTRLDVILKQFLQAIRPTRPIREPYNIETILMEVLKLLEPEIQQRGIQINTDLQP 257

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE 162
               LS +  +I    + +   +         ++      + +    ++   G     PE
Sbjct: 258 SLPILSLDPVQIKQVFYNLIKNAYQSIPPEGGTILLKSGYTDDSVFVTVADTGCGI-SPE 316

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               I +  + +      +    V  +  E+   +           ++  L +
Sbjct: 317 VMGSIYEPFLTTKSTGSGLGLLIVRRIVKEHGGSITLASQPGQGTTITVFLPR 369


>gi|121533921|ref|ZP_01665747.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121307432|gb|EAX48348.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 514

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 74/227 (32%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K +   +  +  L A+  + + + H+I +P+ A+    +LL E     E  +   +   
Sbjct: 280 RKKLEAQVQRAERLAAIGEVAAGLAHEIRNPLMAVKGFAQLLKEDITPAEQAEYSDIIVR 339

Query: 59  SAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID- 110
                 + +     +           D    +     ++E          +      +  
Sbjct: 340 ETERLDRLIEQLLCFARPAATQVAPTDVKEVVESTLLLVETKRLRSHIEIIRDLDRPLPL 399

Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               S +  ++LLN+ + A  ++ + G + +S   + +    ++   G     PE  +++
Sbjct: 400 VLVDSEQLKQVLLNIILNAIQAIEQKGVIRVSANQAADGLHLTVADTGCGI-APENMSKL 458

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +  +   +       L      R+L E         + +L 
Sbjct: 459 FDPFFTTKENGTGLGLAVAHRLVENWNGRILVESTPGQGSAFTLVLP 505


>gi|197121076|ref|YP_002133027.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196170925|gb|ACG71898.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 525

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           M +       S  L  L  + + + H++ +P+ ++  S+ELL       G E  ++ ++ 
Sbjct: 294 MEQAFQ---RSERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAPLGGDERRLLDIVL 350

Query: 55  LSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108
             +      +                VD    L D  +V  +  A    V  +       
Sbjct: 351 REAARLDELVTEFLRFARPAPLRPGAVDLASLLDDALRVFANDPAAAGLVLSREIGPAPA 410

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  +++ NL   A  +L   G               F+++ +G      E+  +I
Sbjct: 411 ACDPDQIRQVVWNLLRNAAQALGGRGGRIAVACGGEDGGAWFAVEDDGPGIPPAER-ERI 469

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +    V  +   +  R+            +  L 
Sbjct: 470 FLPFHTTKERGTGLGLAVVQRIVDAHGGRVEVRSAPGQGARFTVHLP 516


>gi|320104996|ref|YP_004180587.1| histidine kinase [Isosphaera pallida ATCC 43644]
 gi|319752278|gb|ADV64038.1| histidine kinase [Isosphaera pallida ATCC 43644]
          Length = 312

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 18/217 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAIIRLKFMRL 69
           A +   + H+I +P+  +  +L+LL E         +   +  I       +     +  
Sbjct: 53  ARIAGGLAHEIRNPLSTMRLNLDLLAEEFRGSDSIRDRRALTKIERLRKETLRLQNVLED 112

Query: 70  AFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKI 118
              +               + +      +  A    + V    +              + 
Sbjct: 113 FLRFAHLERIQPVDQPLAAVVNEVCDFWEPQAQAHGIVVRVYHDPQPSCSPLDADLFKQA 172

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +LNL + A  ++P GG++ +  + +   N+  +   G          ++ +    +    
Sbjct: 173 ILNLLLNAQQAMPDGGELMLITRRAGAWNVLEVVDTGVGIPAS-LRDKVFEPFQTTKPGG 231

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +   +  R+  E         +  L +
Sbjct: 232 SGLGLPMVRRIVEAHGGRIAFESEPGKGTKFTIWLPR 268


>gi|220915778|ref|YP_002491082.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953632|gb|ACL64016.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 525

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           M +       S  L  L  + + + H++ +P+ ++  S+ELL       G E  ++ ++ 
Sbjct: 294 MEQAFQ---RSERLADLGRVAAGLAHELRNPLASMAGSVELLRAQAPLGGDERRLLDIVL 350

Query: 55  LSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108
             +      +                VD    L D  +V  +  A    V  +       
Sbjct: 351 REASRLDELVTEFLRFARPAPLRPGAVDLASLLEDALRVFTNDPAAAGLVLSREISPAPA 410

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  +++ NL   A  +L   G               F+++ +G      E+  +I
Sbjct: 411 ACDPDQIRQVVWNLLRNAAQALGGRGGRIAVACGGEDGGAWFAVEDDGPGIPPAER-ERI 469

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +    V  +   +  R+            +  L 
Sbjct: 470 FLPFHTTKERGTGLGLAVVQRIVDAHGGRVEVRSAPGQGARFTVHLP 516


>gi|108759665|ref|YP_634982.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463545|gb|ABF88730.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 631

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL------------DEVGIED 47
           K +   +  +  L ++  L + + H+I +P+ A+    + L             +     
Sbjct: 397 KELEKRIIHAEKLASIGQLAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLR 456

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           ++++            + + R A      V     +       E  +A  +        E
Sbjct: 457 KILESSHRILRFTRDLVSYARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIE 516

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                 +     ++ +NL   A  ++P GG V ++      + +  ++  G         
Sbjct: 517 LPPLSAVRANLVQVFVNLITNACHAMPPGGSVILATGRDGQDAVVKVRDTGTGIEPKHL- 575

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +  +     +       +   +  RL  E            L 
Sbjct: 576 QRIFEPFFTTKPEGRGTGLGLSICQGIVENHGGRLTVESTMGEGTTFIVRLP 627


>gi|27804857|gb|AAO22894.1| sensor protein [Myxococcus xanthus]
          Length = 638

 Score =  136 bits (341), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL------------DEVGIED 47
           K +   +  +  L ++  L + + H+I +P+ A+    + L             +     
Sbjct: 404 KELEKRIIHAEKLASIGQLAASVVHEINNPMTAVATYADALLQRSRMTPGANPADQEKLR 463

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           ++++            + + R A      V     +       E  +A  +        E
Sbjct: 464 KILESSHRILRFTRDLVSYARPAQDRPERVQLNAIVDMAVGFCEHVVAQARVTIQREYIE 523

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                 +     ++ +NL   A  ++P GG V ++      + +  ++  G         
Sbjct: 524 LPPLSAVRANLVQVFVNLITNACHAMPPGGSVILATGRDGQDAVVKVRDTGTGIEPKHL- 582

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +  +     +       +   +  RL  E            L 
Sbjct: 583 QRIFEPFFTTKPEGRGTGLGLSICQGIVENHGGRLTVESTMGEGTTFIVRLP 634


>gi|148263490|ref|YP_001230196.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146396990|gb|ABQ25623.1| Cache sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 655

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 17/228 (7%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55
           K +  NL     + +L  L S + H+I +P+G I      L+            +  I+ 
Sbjct: 423 KEMEANLAQQGKMASLGVLSSGVAHEINNPLGVILGYAGYLEGKMSADDPNFRFIHEIKR 482

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110
            S      ++ +               + ++ + I              V   +  +   
Sbjct: 483 ESKRCKKIVQDLLSYARTPKPTLEETDINELLEQIVDFAANHTDMHHVSVVKEFAKDLPR 542

Query: 111 LSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +  ++      +   +          V  ++ D +         NG      E   +
Sbjct: 543 IMADGDQLRQVAINLILNAGAAMQSGGTLVVRTMLDDEGYIHLIFSDNGAGI-SAENLEK 601

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +      +       +  +++ ++  E        ++  L 
Sbjct: 602 IFEPFFTTKTKGTGLGLAITRQIIDQHQGKIAIESEPGKGTTVTVKLP 649


>gi|315647361|ref|ZP_07900474.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315277563|gb|EFU40892.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 479

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 74/223 (33%), Gaps = 13/223 (5%)

Query: 4   NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMSA 60
                + S  L     L + I H+I +P+ +I+  ++LL      +E   ++I       
Sbjct: 256 EEDRVMQSEKLTTAGQLAAGIAHEIRNPLTSINGFVKLLRSSESSNELYFEIIESELKRI 315

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDL 111
            + +  +           +G ++ L  L  I  +++                        
Sbjct: 316 ELIVNELLVLSKPQGVHVSGPIEVLPILEQIITLMKVQAALKNIEIIPHYPDVPISVQGE 375

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++ +NL   A  ++ +GG +T+ +  S +     ++  G     PE+   +    
Sbjct: 376 VNQLKQVFINLLKNAMEAMNQGGTITVDMLRSGHNVQIVVQDEGIGM-TPEQIQSLGQPF 434

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       + H +   +  E + DH    +  L 
Sbjct: 435 FTTKDTGTGLGLMITKNIIHNHGGTMNVESVPDHGTTFTIQLP 477


>gi|258510676|ref|YP_003184110.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
 gi|257477402|gb|ACV57721.1| signal transduction histidine kinase with CheB and CheR activity
            [Alicyclobacillus acidocaldarius subsp. acidocaldarius
            DSM 446]
          Length = 1215

 Score =  135 bits (340), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 72/221 (32%), Gaps = 11/221 (4%)

Query: 4    NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                   S  L A+  L + I H+I +P+ A+    +L+      D  ++++R       
Sbjct: 974  TEELLRKSEMLSAVGELAAGIAHEIRNPLTALKGFTKLILSGSHSDSYLEIMRGELDRIE 1033

Query: 62   IRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +  +                +      +  +E          +        E + +  
Sbjct: 1034 TIVNELLVLSKPQAVHIQRRNFADILRDVVMLLETQALLTHVDIELRIPDEPIEILCVEN 1093

Query: 114  ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            +  ++ +NL   A  ++P GG + ++V+   +  +  ++  G      +K  ++ +    
Sbjct: 1094 QLKQVFINLLKNAIEAMPNGGTIEVTVERDGDHVVIRVRDEGVGI-PQDKMKKLGEPFYT 1152

Query: 174  STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +  ++   +  E  +     ++  L 
Sbjct: 1153 TKDKGTGLGLMVSFKIVEQHGGIIRYESKEGEGTTVTVRLP 1193


>gi|298505233|gb|ADI83956.1| response receiver histidine kinase [Geobacter sulfurreducens KN400]
          Length = 395

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 71/227 (31%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQ 51
           + +     + S  L +L  L + + H+I +P+ +I    +LL     + E       +++
Sbjct: 166 LQQAQAEIVQSEKLASLGYLSAGMAHEIRNPLNSISLFAQLLKSTLDDPEKVGYVDKILK 225

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107
                       L   +        V     +    +     I++     V         
Sbjct: 226 EADRIDDIMRKLLDASKRPRFQLSEVRLDRVIEATLEAFRPQISLHGIAVVKEFRRIPPP 285

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I  NLF+ +   +  GG +T+ +   +   +  +   G      E   +I
Sbjct: 286 FQADPAEIEQIFTNLFLNSIHEMNDGGSLTVVLDQDERNMVIRIADTGPGI-PREHVAKI 344

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V+ +      R+  E  D+   V +  L 
Sbjct: 345 FDPFFTTKTSGSGLGLAVVLRIVKTYDGRIDVEKSDESGTVFAIRLP 391


>gi|258510123|ref|YP_003183557.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476849|gb|ACV57168.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 367

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 68/227 (29%), Gaps = 15/227 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           +       +  +  +  L + + H+I +P+  I   L+LL+      ++  E   ++++ 
Sbjct: 127 LLNQHTEKIERIATIGRLAAGVAHEIRNPLTTIKGFLQLLEQRLERVDMFDEIAYIRVMM 186

Query: 55  LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    +  +        + +      + L  L            V+   +V    E
Sbjct: 187 QEIERVNALVTELLLLSKPQDMTWTTVSVSEVLGHLRPWLDEEARKRGVETVYEVPADLE 246

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++  +L   A  ++ +GG++TI  +  +          G    +   F +I
Sbjct: 247 LQADRGMMDQLFAHLARNAIEAMDKGGRLTIRARAEEGRVEIEFSDTGPGIPYY-LFDRI 305

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +       +  ++   +            +  L 
Sbjct: 306 FDVFYTTKEKGTGLGLAICQRIVADHGGHIRV-SSKGFGTTFTVSLP 351


>gi|156743753|ref|YP_001433882.1| GAF sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156235081|gb|ABU59864.1| GAF sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 492

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 73/230 (31%), Gaps = 21/230 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
               L S  L A+  L + + H+I +P+ A  NSL L+++    D   +           
Sbjct: 252 QAQLLQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDIPPDTPQRHFLTIAQNELG 311

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----ID 110
             +        F R A       +    L +  ++++  +   +              I 
Sbjct: 312 RIARIITRMRDFYRPARDELEPTEINDLLAETIELVQTHLRHGQVTVTVDFCPNLPRLIA 371

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKF 164
              +  ++ LNL + A  ++P GG++                 + S++ +G     PE  
Sbjct: 372 HPDQLRQVFLNLMLNACDAMPHGGQLHITTELSCENDADAQYVVISIRDSGTGI-NPEHM 430

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +      +       +  ++   +  E         + LL 
Sbjct: 431 PHLFEPFYTTKPQGTGLGLAISAHIVTQHGGHIQVESEPGAGSTFTVLLP 480


>gi|222054628|ref|YP_002536990.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221563917|gb|ACM19889.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 367

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + K       S  L AL  L + + H+I +P+G+I  + E+L +       + E ++++ 
Sbjct: 135 LIKTEEQLRRSERLSALGELSATLAHEIRNPLGSIKGTTEILKDSFAPGEKKYEFLEILL 194

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGE 107
             +      ++             +   +    + +  F       + V  R++ +    
Sbjct: 195 KEADRLNRVVENFLGLASPVRVEQNRCDIMLELRELVAFTTAEALSMEVKVRLEPAEIPP 254

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI------SVQDSKNENIFSLKINGNLARFP 161
               + +  ++ LNL M A  +   GG+V I         +++     S   NG      
Sbjct: 255 IKGDTEKLRQVFLNLLMNALQATGTGGEVVISAVGPLHTSENQPVIELSFADNGQGI-DQ 313

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I      +      +       +   +   +            + +L 
Sbjct: 314 EMLERIFQPFFTTKKGGTGLGLAITQKIVESHGGTIRVTSTKGKGTTFTVILP 366


>gi|39996221|ref|NP_952172.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982986|gb|AAR34445.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 420

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 71/227 (31%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQ 51
           + +     + S  L +L  L + + H+I +P+ +I    +LL     + E       +++
Sbjct: 191 LQQAQAEIVQSEKLASLGYLSAGMAHEIRNPLNSISLFAQLLKSTLDDPEKVGYVDKILK 250

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107
                       L   +        V     +    +     I++     V         
Sbjct: 251 EADRIDDIMRKLLDASKRPRFQLSEVRLDRVIEATLEAFRPQISLHGIAVVKEFRRIPPP 310

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I  NLF+ +   +  GG +T+ +   +   +  +   G      E   +I
Sbjct: 311 FQADPAEIEQIFTNLFLNSIHEMNDGGSLTVVLDQDERNMVIRIADTGPGI-PREHVAKI 369

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V+ +      R+  E  D+   V +  L 
Sbjct: 370 FDPFFTTKTSGSGLGLAVVLRIVKTYDGRIDVEKSDESGTVFAIRLP 416


>gi|148656031|ref|YP_001276236.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568141|gb|ABQ90286.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 488

 Score =  135 bits (340), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 76/234 (32%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
           ++      L S  L A+  L + + H+I +P+ A  NSL L+++    D   +       
Sbjct: 248 LSAAQAQLLQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDMPPDAPQRHFLTIAQ 307

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 +        F R A       +    L +  ++++  +        +     + 
Sbjct: 308 NELGRIARIITRMRDFYRPARDELELTEVNDLLAETIELVQTHLRHGHVTVTASFCPNLP 367

Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARF 160
                  +  ++ LNL + A  ++P GG++          +  +   + +++  G     
Sbjct: 368 LLVAHPDQLRQVFLNLMLNACDAMPNGGQLHISTELSCRNERDEQWVVVAVRDTGVGIN- 426

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    + +    +      +       +  ++   +  E         + LL 
Sbjct: 427 PEHMPHLFEPFYTTKPQGTGLGLAISAHIVTQHGGHIQVESTPGVGSTFTVLLP 480


>gi|39996594|ref|NP_952545.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39983475|gb|AAR34868.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|307634854|gb|ADI84333.2| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 550

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           M +++     S  L A+  L +RI H+I +P+ AI  S +L+ +       +  +  ++ 
Sbjct: 312 MEESLK---KSDRLAAIGELSARIAHEIRNPLAAISGSTQLIAQGGAVSDPDRRLFDIVL 368

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------QVSWTGE 107
             +      +                +    +   +   +  D+R        +V  T  
Sbjct: 369 RETDRLNGLISDFLAYARPNQPEPRPVDFHSLVAELAALVTSDERFEGVVIDNRVDSTFR 428

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---------NIFSLKINGNLA 158
            +    +  ++L NL   A  ++P GG +T+    S               S+   G   
Sbjct: 429 PLLDPDQFRQVLWNLMGNAAGAMPDGGTITVEAGQSDEIRGGGQRRITYRISVADTGLGM 488

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I +    +      +    V  +   +  R+  E       +    L 
Sbjct: 489 DEATV-ARIFEPFFTTKSTGTGLGLATVHRIVEAHGGRIAVESTPGKGTMFVIFLP 543


>gi|52079915|ref|YP_078706.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52785286|ref|YP_091115.1| KinD [Bacillus licheniformis ATCC 14580]
 gi|319646267|ref|ZP_08000497.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52003126|gb|AAU23068.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347788|gb|AAU40422.1| KinD [Bacillus licheniformis ATCC 14580]
 gi|317392017|gb|EFV72814.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 503

 Score =  135 bits (339), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 66/225 (29%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +        ++L+  L +   H+I +P+  I   ++LL +     E      +      
Sbjct: 273 QERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYQSKEDQMYFSIIDQEIR 332

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKI 109
              + +               L  + ++I++ +             V+ +          
Sbjct: 333 RINQIVSEFLVLGKPTAEQWQLNSMNEMIDEIMPIIHSEANLYNVEVEFQDCGEDPAYVY 392

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++LN+   A  S+  GGK+ I ++  + +    +K  G      E    I  
Sbjct: 393 CKKDHIKQVVLNVAKNALESMKNGGKLVIQIEHDQEKAQIIVKDIGEGI-PQEMMESIFQ 451

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             V S      +       +       +  E        ++  L 
Sbjct: 452 PFVTSKEKGTGLGLVVCKRIISMYGGTIHIESERHKGTTVTITLP 496


>gi|317127574|ref|YP_004093856.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315472522|gb|ADU29125.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 611

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 12/225 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           MA+ +  N   + +   L + I H+I +P+ AI   L+LL       E  +     ++ R
Sbjct: 378 MAEEMMINSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLLRPDFVTKEKYMNIISTEIER 437

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +  + + + +        Y+ +    I       +    I     +   +  E   +  E
Sbjct: 438 IEMIISELLILSKPQEIHYSKTNIVSIIEEVKMLLETQAILKGVEINTEFYCENTYIYCE 497

Query: 115 RAKILLNLFM---VAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           + ++          A  ++P      + ++    +N      K  G      EK ++I  
Sbjct: 498 KNQLKQVCINFIKNAIEAMPNGGNLYINVTENREENGIFIHFKDEGKGI-PKEKISKIGH 556

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  D   + F     +   ++  +  +   +    ++  L 
Sbjct: 557 PFYTTKSDGTGLGFMVSKRIVEHHEGYVEIDSELNVGTTITVFLP 601


>gi|78223657|ref|YP_385404.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78194912|gb|ABB32679.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 367

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 58/229 (25%), Gaps = 20/229 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
                 +  L AL  L + + H+I +P+G+I  + E+L +       + E ++++   + 
Sbjct: 139 EEQLRRAERLSALGELSAMLAHEIRNPLGSIRGTAEILRDDFQPGHPKHEFLEILLKETD 198

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                        +              L  L  +         V   ++          
Sbjct: 199 RLNRVVEDFLRLSRPGDGERKTCDLAAELRELVTLLGSDAAARGVRIGLEADEVPPVTGD 258

Query: 112 SRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +  LNL +    +           K+     D +     +    G      E   
Sbjct: 259 PEKLRQAFLNLMLNGIQATGAGGTVTVRVKMFPRSGDDRPLVELAFADTGAGI-PRESLE 317

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I      +      +       +   +   +  E            L 
Sbjct: 318 RIFTPFFTTKEGGTGLGLAITQRIVEGHGGTVTVESEPGQGTTFRVRLP 366


>gi|239826867|ref|YP_002949491.1| histidine kinase [Geobacillus sp. WCH70]
 gi|239807160|gb|ACS24225.1| histidine kinase [Geobacillus sp. WCH70]
          Length = 581

 Score =  135 bits (339), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 66/223 (29%), Gaps = 11/223 (4%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            ++      S  L     L + + H+I +P+ ++   ++LL E         +I      
Sbjct: 353 QQSEELLRKSEKLAVVGELAAGVAHEIRNPLTSLKGFIQLLKEGECNQTYFDIIEAELER 412

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------IDL 111
               +    L      +  +   + ++ Q +   +     +                   
Sbjct: 413 LNEIVDEFLLLGKPHPTKKAYSRVSEMLQHVMKLLEGQALLHHVTVQYFVDEQLPLLYCD 472

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++ +N+   A  ++P GG + I  +   +  +  +   G      E+  ++ +  
Sbjct: 473 ENQLKQVFINIIKNAIEAMPNGGILRIEAKQRLDSILICITDEGCGI-PKERMAKLGEPF 531

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +  ++     +     +  +  
Sbjct: 532 YSTKEKGTGLGLMVSFKIVEAHGGKMKIHSEEGKGTTVCLIFP 574


>gi|289191732|ref|YP_003457673.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
 gi|288938182|gb|ADC68937.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus sp. FS406-22]
          Length = 631

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 72/239 (30%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51
           AK +  +   +     L + + S + H++ +P+ +I   +EL+ +         +   ++
Sbjct: 392 AKELEESYEKLKEVDRLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNENQRRCLE 451

Query: 52  LIRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           + + +       +  M           +         D +  + +  Q +     ++ + 
Sbjct: 452 IAKNNIDRLKRLIDNMLDLSKIESGAIKFDIKDIKVKDMINEVLNSLQPLTKEKNIEVKC 511

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +              ++L+NL   A    P  G + I     KN     +K  G     
Sbjct: 512 DIEDNLTAKVDKDRIIQVLINLIENAIKFSPVKGVIEIHAFRDKNYAHIIIKDYGPGIPK 571

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I D   +        D   +       +   +  ++  E           LL 
Sbjct: 572 KDL-ERIFDKFYQVNFPKIKRDGAGLGLAICKSIIEAHGGKIWVESELGKGSAFHILLP 629


>gi|189423221|ref|YP_001950398.1| histidine kinase [Geobacter lovleyi SZ]
 gi|189419480|gb|ACD93878.1| histidine kinase [Geobacter lovleyi SZ]
          Length = 614

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 68/229 (29%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
           + +       +  L    +L + + H+I +P+  I  + ELL        D+     E++
Sbjct: 383 LLETEKELARNERLAELGMLSAGVAHEINNPLAIIRGNAELLQMSIPAGADDQEEVSEIL 442

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
                 +      L   R              L +I  Q+          ++  +    I
Sbjct: 443 TQAGRINRITSSLLSLARQEKRQVSRFPLPDLLDEILNQIGHQVPLAGYTIERRYQQTAI 502

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFT 165
            L  +R ++             ++   G++TIS + D       ++   G     PE+  
Sbjct: 503 QLEADREQLRQVFTNLILNGLQAMEGEGRLTISTEADPDGTCSITVADTGPGI-DPEQQE 561

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++      +  +   +       +   +   +  +         +  L 
Sbjct: 562 RLFSPFFSTKQNGTGLGLAVSWGIVRNHGGTIAVQSALGCGARFTVTLP 610


>gi|197119034|ref|YP_002139461.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088394|gb|ACH39665.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 829

 Score =  134 bits (338), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            +N+   +  +D L +L  L + I H++ +P+  I   L+ L        ++  +  + +
Sbjct: 603 RENLQEEMMRLDRLASLGKLSAGIAHEVRNPLTGISLLLDDLHDQASSGPEDRDLIKKAL 662

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             I          L +           D    + D   ++       K       GE   
Sbjct: 663 AEIERVEKLINALLNYSSPVRADFRECDLNRLVCDTVLLMRRQCERQKVQLNLTEGEVPP 722

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           L  +     + +LN+   A  +LP GG++ +         +  +  +G      +    I
Sbjct: 723 LRLDPEKIKQAVLNIIKNAQEALPEGGRIEVVTSVQDGYAVIGIGDDGPGIASHDLPL-I 781

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  ++  E         +  L 
Sbjct: 782 FEPFFTRKGAGTGLGLSITQRIVEEHHGKVRVETAPGGGTRFTIELP 828


>gi|222055425|ref|YP_002537787.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221564714|gb|ACM20686.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 654

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 67/228 (29%), Gaps = 18/228 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           MA N+        + +L  L S + H+I +P+G I      L+            +  I+
Sbjct: 425 MAANLA---QQGKMASLGVLSSGVAHEINNPLGVILGYAGYLEGKLSPDDPNYRFVHEIK 481

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKI 109
             S      ++ +               +  +   I              V   + GE  
Sbjct: 482 RESKRCKKIVQDLLSYARTPKPTLENTDINALLDQIVDFAANHTDMHHVSVVKEFAGELP 541

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +  ++          + A++  GG++ +  +   +    +   NG     PE   +
Sbjct: 542 TIMADGDQLRQVAINLILNSGAAMQSGGRLIVGSRLENSFIFLTFADNGAGI-SPENLEK 600

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +      +       +  +++  +  E        +   L 
Sbjct: 601 IFEPFFTTKTKGTGLGLAITKQIIEQHQGEITIESEQGRGTTVVVKLP 648


>gi|298506526|gb|ADI85249.1| sensor histidine kinase, Cache and HAMP domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 830

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50
            ++    ++ +D L +L  L + I H++ +P+  +   L+ L +          +  + +
Sbjct: 603 KESFREEMTRLDRLASLGKLAAGIAHEVRNPLTGVSLLLDDLHDRAGLDAESQAMMGKAL 662

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q I          L F      +    D    + D   ++               G+   
Sbjct: 663 QEIERVERLVAGLLNFSSPPKAFLREADLNRVIQDTLLLLRRECESRNVALGFEPGDVPV 722

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +     + LLNL   A  ++P GG V ++     +  + ++   G      +    I
Sbjct: 723 FRIDVEKVRQALLNLVKNALEAMPDGGSVRVTTGVDGDTAVVTVADTGPGIADNDLPL-I 781

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  R+  E         +  L 
Sbjct: 782 FEPFFTRKGAGTGLGLSITQRIVEEHHGRISVESSAGAGTTFTITLP 828


>gi|39997587|ref|NP_953538.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984479|gb|AAR35865.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 830

 Score =  134 bits (338), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50
            ++    ++ +D L +L  L + I H++ +P+  +   L+ L +          +  + +
Sbjct: 603 KESFREEMTRLDRLASLGKLAAGIAHEVRNPLTGVSLLLDDLHDRAGLDAESQAMMGKAL 662

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q I          L F      +    D    + D   ++               G+   
Sbjct: 663 QEIERVERLVAGLLNFSSPPKAFLREADLNRVIQDTLLLLRRECESRNVALGFEPGDVPV 722

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +     + LLNL   A  ++P GG V ++     +  + ++   G      +    I
Sbjct: 723 FRIDVEKVRQALLNLVKNALEAMPDGGSVRVTTGVDGDTAVVTVADTGPGIADNDLPL-I 781

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  R+  E         +  L 
Sbjct: 782 FEPFFTRKGAGTGLGLSITQRIVEEHHGRISVESSAGAGTTFTITLP 828


>gi|323706107|ref|ZP_08117676.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534551|gb|EGB24333.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 453

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 68/227 (29%), Gaps = 24/227 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLK- 65
             + +   + + H++ +P+ +I   +E L E         D  +++I   +      +  
Sbjct: 225 EKIRSDFVANVSHELRTPLTSIRGFIETLREGAIDNIERRDRFLEIIEFEAERLTRLIND 284

Query: 66  --------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                    ++  F     V           + +     + ++      + + +   + +
Sbjct: 285 ILTLSEIENLKEGFVKEDIVIDEEINEIFYIMEKTAEDKNIKLIKDLNCKDVVIKISKDR 344

Query: 118 ILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
           +   +           P GG V ++  D +N  +  ++ +G      E   ++ +     
Sbjct: 345 LRQMIINLVDNGIKYTPEGGYVKVTTTDMENNIVIEVEDSGIGI-SKENIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    +    V  +    K  +  E         + +L K
Sbjct: 404 DKGRSRKLGGTGLGLAIVKHIVESMKGSITVESEVGKGTKFAIVLPK 450


>gi|78222275|ref|YP_384022.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78193530|gb|ABB31297.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 673

 Score =  134 bits (337), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 68/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           + K     + +  L    +L + + H+I +P+  I  + ELL     E     E +  I 
Sbjct: 430 LVKTQEDLVRAAKLADIGMLAAGVAHEINNPLAIIRGNTELLQMAIPEDDPSREEVDTIA 489

Query: 55  LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
             +          LKF R      G+V+    L +I  QV          ++  +  +  
Sbjct: 490 QQTGRVERIVGSLLKFARQQKKELGTVEVNRLLDEILKQVGHQIPLAGIDIRRDYAADIP 549

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            L  +  ++      +   ++          V  S          +++  G     PE  
Sbjct: 550 LLEGDGDQLRQVFTNLILNAIQAMKEGGTLTVGTSRDSEAGTCTVAVEDTGAGI-PPENL 608

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I      +  D   +       +  ++   +  E           +L 
Sbjct: 609 RNIFSPFFTTRNDGTGLGLAVSYGIVRDHGGNIQVESTAGTGSTFRVVLP 658


>gi|269139357|ref|YP_003296058.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Edwardsiella tarda EIB202]
 gi|267985018|gb|ACY84847.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Edwardsiella tarda EIB202]
 gi|304559262|gb|ADM41926.1| Sensory histidine kinase AtoS [Edwardsiella tarda FL6-60]
          Length = 590

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 75/229 (32%), Gaps = 16/229 (6%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K     L  +  L  L  L + + H++ +P+ AI   ++++ +   +    + + +   
Sbjct: 355 RKETQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTTQPAHQEYLSVVLK 414

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
                 K ++    ++    S      +  +I++ + + +   V            R   
Sbjct: 415 EIDSINKVIQQLLDFSRPRQSQWQQVSLNALIDEALILVQTSGVQARIAFHCALDRRLPA 474

Query: 116 --------AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++  RG     + Q +  +   +++ +G          +
Sbjct: 475 IVADRELLKQVLLNILINAVQAISARGEIRIRTWQPAPAQQAVAIEDSGCGIDIA-LQQK 533

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D    +      +       + + ++  +            +  L +
Sbjct: 534 IFDPFFTTKASGTGLGLALSQRIINAHRGDIDVVSTPGGGSTFTLTLPR 582


>gi|205372579|ref|ZP_03225390.1| KinC [Bacillus coahuilensis m4-4]
          Length = 434

 Score =  134 bits (337), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSM 58
            +N    L S+ L  +A + + I H++ +P+ +I   L+L+ E      E + LI     
Sbjct: 203 QQNENLALESVKLGAIAQMSASIAHEVRNPLTSISGFLQLMKEQKSFNPEYIDLIFSEMK 262

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
              + L  + +           I L  + +     +  +       +  S     I +  
Sbjct: 263 RIELVLSELLVLSKPQAVTYKKIELCTVIEQVITLMTTETNMKSIEIHQSLPAYPIFIKG 322

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           E  ++   +      A  ++  GGK+++    S +     ++  G      +    I   
Sbjct: 323 EENQLKQVMINLIKNAIDAMDHGGKISLYYSLSPDTISLFIRDEGVGIPEEQLHN-IGQA 381

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   ++  +L +           +L 
Sbjct: 382 FYTTKEKGTGLGLTVCYKIIENHQGNILIDSKVGEGTTFEIILP 425


>gi|148262167|ref|YP_001228873.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146395667|gb|ABQ24300.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 372

 Score =  134 bits (337), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 66/225 (29%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
                 +  L  L  + + + H+I +P+G+I  + E+L +       + E +++    + 
Sbjct: 139 EEQLRRAEKLSTLGEMAAVLAHEIRNPLGSIRGTAEILKDDYNPGDPKHEFIEIQIKETE 198

Query: 59  SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++                    +    +  +     D           +      
Sbjct: 199 RLNRVVEDFLHMARPQPADLRPCPVQDELETIVTLVANDARDRQIKLVLQPPPFPVIIRA 258

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQIVD 169
              +  +  LN+ + A  + P  G V IS    +        + +G      E   +I +
Sbjct: 259 DGEKLRQAFLNIIINALQATPPSGSVIISTTIYQAALCEIRFRDSGPGI-DAETLGRIFE 317

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  D   +       +   +   ++ E    H   ++  L 
Sbjct: 318 PFFTTKPDGTGLGLAITRKIIESHGGTMMVESESGHGTTVTVRLP 362


>gi|323702132|ref|ZP_08113799.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532819|gb|EGB22691.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 453

 Score =  134 bits (336), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 71/236 (30%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           + ++I        +     + + H++ +P+ +I+  LE L     ++       ++++  
Sbjct: 216 LLRDITERRKLERMRTEFVANVSHELRTPLTSINGFLETLLDGAIEDPKTARHFLEIMNA 275

Query: 56  SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTG 106
            +      +  +                 VD    +    Q+ +        ++      
Sbjct: 276 ETKRLANLIDDLLQLSRLEDRKTVLNKQPVDLRDVINGTIQMFKARAEEKGIKLFTVLPD 335

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
           +   +  +     ++++NL   A    P  G+V + V  ++ +    +   G      + 
Sbjct: 336 KLPQVPGDHGLLTQVMVNLIDNAIKYTPAFGQVKVGVNLNREKVRVYVADTGIGIPQEDL 395

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   +  +    +       +   +  ++  E         S  L 
Sbjct: 396 PRIFERFYRVDKARSRVMGGTGLGLAICKHIVEVHGGQIEVESGPG-GSTFSFTLP 450


>gi|149922767|ref|ZP_01911192.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149816387|gb|EDM75888.1| sensory box sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 783

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 20/226 (8%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---- 62
           L S  + A  LL + I H+I +P+  +    +LL E  +E ++ + +   + S       
Sbjct: 542 LQSQKMAAVGLLAAGIAHEINNPLSGVVGYSKLLLEKPLEPKIREKVERIAASGERCRKI 601

Query: 63  ----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------KIDLS 112
                L       G    VD    +  + +V E    +     +    +       +  +
Sbjct: 602 VEGVLLFSRSQQGGERTEVDLATLVDRVVRVGEYQWKMHNVRILREPEQLERPLTLMADA 661

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171
            +  ++LLNL   A  ++PRGG + I + + + +  IF++   G      E    I D  
Sbjct: 662 DQIEQVLLNLLSNAVDAMPRGGTIRIRLGEGEADTVIFAVSDEGMGI-PEEIRHSIFDPF 720

Query: 172 VESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +        +       +  ++   +L E         +  L +
Sbjct: 721 FSTKEIGKGTGLGLSISYGIVRDHGGDILLESQPGRGTTFTVTLPR 766


>gi|322381982|ref|ZP_08055930.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154046|gb|EFX46376.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 513

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 72/222 (32%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMSA 60
            +        + +V  L S + H+I +P+  +   L++  E         +LI       
Sbjct: 275 KEEHLLRTEKLRVVGELASGMAHEIRNPLTTVKGFLQIAKENEYNIRNWYELIMDEIKRM 334

Query: 61  IIRL-KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDLS 112
                +F++ +  +            I +VI    A   ++               +   
Sbjct: 335 SELTSEFLQFSKPHAIQFRIHSLHSCILRVIWLTSAEGTKLGHEVVYQAPAEDAYVLMDE 394

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++L+NL   A+ ++ + GKVT+ +   K + +  ++  G      ++  +I     
Sbjct: 395 DKIVQMLMNLIKNAYEAMQKKGKVTLRLSRLKEDVVLEVEDTGTGI-PQDRVEKIFTPFY 453

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +  ++   +  E   ++         
Sbjct: 454 TTKETGTGLGLSICHKIVQDHGGTMEVESFPENGTKFIITFP 495


>gi|310821064|ref|YP_003953422.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309394136|gb|ADO71595.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 748

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 60/228 (26%), Gaps = 24/228 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--- 64
               L AL  + + + H+I +P+GAI  + + LD   +  E  + + +            
Sbjct: 466 ERDRLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPRRLPGEDGEFLGVIVEEVNRLNGVV 525

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                + R      G  D    +    ++I++ +  +  + V        +  +  ++  
Sbjct: 526 TAFLDYARPLKQNFGPTDLNEVVTRTMRLIQNDVPKEMNLAVELDLTVPKVDGDAEQLKQ 585

Query: 121 NLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            L  +   +                +  +      +        +   G      E+   
Sbjct: 586 VLINLVQNAVQAIGPSAGRITVRTLKPDRFGDFRSNVAESVEVHVFDTGPGI-PAEQQQH 644

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       +   +   +  +       +      
Sbjct: 645 IFVPFFTTKEKGTGLGLAICQRIVKNHGGSISVQSKPGEGCIFIVRFP 692


>gi|115379441|ref|ZP_01466541.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1]
 gi|115363550|gb|EAU62685.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 60/228 (26%), Gaps = 24/228 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--- 64
               L AL  + + + H+I +P+GAI  + + LD   +  E  + + +            
Sbjct: 170 ERDRLAALGEMAAGLAHEIRNPLGAIKGAAQCLDPRRLPGEDGEFLGVIVEEVNRLNGVV 229

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                + R      G  D    +    ++I++ +  +  + V        +  +  ++  
Sbjct: 230 TAFLDYARPLKQNFGPTDLNEVVTRTMRLIQNDVPKEMNLAVELDLTVPKVDGDAEQLKQ 289

Query: 121 NLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            L  +   +                +  +      +        +   G      E+   
Sbjct: 290 VLINLVQNAVQAIGPSAGRITVRTLKPDRFGDFRSNVAESVEVHVFDTGPGI-PAEQQQH 348

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       +   +   +  +       +      
Sbjct: 349 IFVPFFTTKEKGTGLGLAICQRIVKNHGGSISVQSKPGEGCIFIVRFP 396


>gi|158522822|ref|YP_001530692.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511648|gb|ABW68615.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 495

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           + K     L +  + +L  L + + H + +P+G I    +LL E              ++
Sbjct: 253 LQKTQTQLLQAEKMSSLGKLAAGVAHQLNNPLGGIMLYAKLLLEDYDLSREVTEDIHRIL 312

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106
           +  + SS      L+F R        VD    +     ++E+          +       
Sbjct: 313 RDAQRSSDIVRELLEFARQTRQQRTMVDVNQSVARTLFLLENQTLFHDITIEKRFADTAL 372

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKF 164
                 ++   + +N+ + A  ++   G++TI+             +   G      +  
Sbjct: 373 WVDADVQQLNHVFMNIILNAAQAMEGKGELTITTGASAMGEMVTVEIADTGPGI-PADTL 431

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +  +     +    V  +  ++  R+      +   V    L 
Sbjct: 432 PRIFEPFYTTKDEGKGTGLGLSLVYSIIDDHGGRVSAANKPERGAVFRVELP 483


>gi|256810598|ref|YP_003127967.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
 gi|256793798|gb|ACV24467.1| integral membrane sensor signal transduction histidine kinase
           [Methanocaldococcus fervens AG86]
          Length = 632

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54
           + ++         L + + S + H++ +P+ +I   +EL+ +  +      +   +++  
Sbjct: 396 LKESYEKLKEIDKLKSEIISIVSHELRTPLTSIKGYVELVLDGLMGELNSNQRRCLEIAN 455

Query: 55  LSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +       +  M           +         D ++ + +          ++ + ++ 
Sbjct: 456 NNIDRLKRLIDDMLDLSKIESGTIKFDIKDVKIKDMVVDVLNSLGPQIKEKNIEIKCEIE 515

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L+NL   A    P  G + I      N     +K  G      + 
Sbjct: 516 ENLTAKVDKDRITQVLINLIENAIKFSPVKGVIEIHAFRDNNYAHIIIKDYGPGIPKKDL 575

Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +   D   +       +   +  ++  E           LL 
Sbjct: 576 DKIFDKFYQVNFPKIKKDGAGLGLAICKSIIEAHGGKIWVESELGKGTSFHVLLP 630


>gi|304317189|ref|YP_003852334.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778691|gb|ADL69250.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 453

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 24/227 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L E         D+ +++I   +      +  
Sbjct: 225 EKIRSDFVANVSHELRTPLTSIRGFIETLREGAIDNVEERDKFLEIIEFEAERLTRLIND 284

Query: 67  MRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRE 114
           +          +                   + +       ++                 
Sbjct: 285 ILTLSEIENLKEGFVKEDIAIDDEVNEIFYIMEKTANDKSIKLIKDLNCSGVVIKTSKDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL        P GG V ++  D K + +  +K +G      E   ++ +     
Sbjct: 345 LRQMIINLVDNGIKYTPEGGYVKVTTIDRKGDVVIEVKDSGIGI-SKENIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    +    V  +    K  +  E         + +L K
Sbjct: 404 DKGRSRKLGGTGLGLAIVKHIVESMKGSISVESEVGKGTKFTIVLPK 450


>gi|212639223|ref|YP_002315743.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212560703|gb|ACJ33758.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 417

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRL 55
           M +++     +  L     + + I H+I +P+  +   L+ L E   E  +    QL+  
Sbjct: 183 MFQSLNQMKEAEKLAIAGRIAAGIAHEIRNPLTTVRGYLQFLKEQLPEHIITLIDQLLIP 242

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGE 107
               A   +           +    I +    Q   D           V+    +    +
Sbjct: 243 ELDRANDIITDFLNIAKPNEAKAEWIEVNHFIQNDVDLLLKSEALLHNVELSYHLDEKLQ 302

Query: 108 KIDLSRERAKILLNLFMVAHAS----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +  ++ ++L  L  +   +      +  +V I  +   N     ++ NG        
Sbjct: 303 HYTVYIDKNQLLQVLINLFRNAIEAKTEKSLRVNIETKLHNNLVQIYVRDNGPGIPPT-I 361

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + D    +      +       +   +K  +  +    H       L 
Sbjct: 362 IHHVFDPFFSTKSTGTGLGLSLSRKIVELHKGSMRVQSEFGHGSCFIIELP 412


>gi|94969524|ref|YP_591572.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter
            versatilis Ellin345]
 gi|94551574|gb|ABF41498.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter
            versatilis Ellin345]
          Length = 1168

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +     L S  + A+  L S + H++ +P+ AI    +LL++  +    +  ++    
Sbjct: 786  LRRTQEQLLQSEKMSAVGQLISGVAHELNNPLTAIVGYAQLLEQEPLSARSLDFVQKLYK 845

Query: 59   SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKID 110
                        L F R        VD    + +   +   D    + RV+  ++     
Sbjct: 846  QTQRTRRVVQNLLSFARQRKPLKQDVDLRRVIDETLALRDYDLKLNNIRVERDFSEAFPH 905

Query: 111  LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-----LKINGNLARFPE 162
            +  +     ++ LN+   A  ++  GG+       +  +          + +G   + P 
Sbjct: 906  VIADSHQLEQVFLNIINNAVDAMLEGGRGGALRVSAGIDFEHDAALVEFRDSGPGIKEP- 964

Query: 163  KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I D    + +      +       +  E+   +      +   +    L 
Sbjct: 965  --KRIFDPFYTTKVVGKGTGLGLSICYGIVKEHGGDITAFNHAEGGAIFQVRLP 1016


>gi|172058212|ref|YP_001814672.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171990733|gb|ACB61655.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 577

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ +I    E L +       I ++ + +I   S      ++ +     
Sbjct: 357 FVANVSHELKTPLTSIKGFAETLLDGAQDVPEIREQFLNIIHDESERMQTLVEDLLELSR 416

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                    T  VD    L +   +++       +   ++               ++++N
Sbjct: 417 LEQDNYQLETTIVDVTSLLHETATLLQRKATEKQMTIHLETEEEVFIRADLNRLKQVVVN 476

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A    P GG V IS++D +   +  +K +G      E   +I +            
Sbjct: 477 LVANALNYTPNGGNVWISLEDGEEAVMLRIKDDGIGIHPKE-MQRIFERFYRVDKARSRN 535

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +   +   +  E  ++     +  L K
Sbjct: 536 SGGTGLGLAIVKHIIDLHHGTIDVESEENQGTTFTIRLPK 575


>gi|308173366|ref|YP_003920071.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606230|emb|CBI42601.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus amyloliquefaciens DSM 7]
          Length = 606

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     L S  L     L + I H+I +P+ AI   L+L+       E     +    S
Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEENEHYFEIVFSELS 440

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
              +I  + +  A     +V   + L  I       +          ++  +  + + ++
Sbjct: 441 RIELILSELLMFAKPQHNAVKERVNLKKIISEVTALLETQANLKGIFIKTDYERDSMFIN 500

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ ++          A  S+P GG V I + + +     ++K  G+         +I +
Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVHILMTEDEYSVNVTVKDEGDGIPEN-VLKRIGE 559

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       L   ++  +  +   D          K
Sbjct: 560 PFLTTKEKGTGLGLMVTFNLIKNHQGAIQVDSKPDKGTAFHITFPK 605


>gi|108763457|ref|YP_631616.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108467337|gb|ABF92522.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 491

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 80/224 (35%), Gaps = 10/224 (4%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56
           + ++    + S  L  +  L + + H+I +P+G I   + LL     G   + +++I   
Sbjct: 266 LREHQERLVQSERLAGIGRLAAGVAHEINNPLGVILGYVRLLQRKAEGALADDLRIIEEE 325

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111
           ++     ++ M             + L ++      +  E        + V    +    
Sbjct: 326 TLRCRDIVEGMLDLSRPLQVPGETLELRELVEEVVSRQRESAQHSAASLTVEGEAQVAGH 385

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +   +++ NL   A  +    G+VT+++Q  + E   S + +G     PE   ++ +  
Sbjct: 386 PQRLRQVVTNLVKNAMEAAGPSGQVTVAIQAHEGEVALSFRDSGPGL-SPEAQKRMFEPF 444

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +      +       +A  +  R+ P  +       +  L +
Sbjct: 445 FTTKPHGTGLGLAVSQAIAQAHGGRIQPRNLPGRGAEFTLHLPR 488


>gi|258514365|ref|YP_003190587.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778070|gb|ACV61964.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 458

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           ++I        +     + + H++ +P+ +I   LE L     +E  I    ++ +   +
Sbjct: 219 RDITDRRKLEQMRTEFVANVSHELRTPLTSISGFLETLLDGALEEPEIARRFLEHMSDET 278

Query: 58  MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEK 108
                 +  +        R        VD    +  +  V           + V+ +   
Sbjct: 279 ERLTRLINDLLNLSNIEDRQFVPNFQPVDMAELIHRVAPVYEPRAREKGLTLMVTLSPNL 338

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +     ++L NL   A    P  GK+ I  + S+ E    +   G      E   
Sbjct: 339 PPVIGDEDLLMQVLTNLIDNAIKYTPAKGKIEIKARASEQEMKVIVTDTGIGI-PTESLA 397

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +            +    +    V  +   +   L          + + +L 
Sbjct: 398 RIFERFYRVDKARSREMGGTGLGLSIVKHIVERHGGSLEVTSTVGKGSIFAFILP 452


>gi|148265413|ref|YP_001232119.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146398913|gb|ABQ27546.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 671

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 64/228 (28%), Gaps = 17/228 (7%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           +     + +  L    ++ + + H+I +P+  I  + E+L+          E + +I   
Sbjct: 431 QTQAELVRAEKLADLGIMAAGVAHEINTPLTIIRGNAEVLEMFITPGHPNREEIDIISRQ 490

Query: 57  SMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  + L                     +  I            R         
Sbjct: 491 TERMAKIVSNLLLFARQKKLHQGRVAIHALLNDIVSQIGFQATLADIRIVRNYSPDLDTI 550

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              S +  ++  NL + A  ++   G +T    +   +      +   G+    P++  +
Sbjct: 551 SGDSDQLRQVFTNLILNAVQAMEGSGTLTLATRILPDEAGYSIEVADTGSGI-GPDQREK 609

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       +  ++   +  E   +       +L 
Sbjct: 610 IFTPFFTTKATGSGLGLSVSYGIIKDHGGDISVESSPETGTTFRVVLP 657


>gi|222054729|ref|YP_002537091.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221564018|gb|ACM19990.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 663

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           + K     + +  L A+  L + + H+I +P+  I  + ELL              D + 
Sbjct: 430 LVKAREELVRAEKLAAIGELAAGVAHEINNPMAIIRGNTELLQMSVPEGADNRDEVDTIY 489

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
           Q +          L+F R      G V     + +I  Q++        R+   +     
Sbjct: 490 QQVGRVERIVGNLLRFARQEKKQLGHVRVNELMEEILAQIVHQVPLSHIRIIKEYEPGLP 549

Query: 110 DLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKF 164
            L  +  +I   L  +   ++    K     V   +   + +    +   G      +  
Sbjct: 550 ILEGDSEQIRQVLTNLVLNAIQAMDKGGILTVRTQLDRQREQTEIMIADTGTGI-EADNL 608

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            QI +    +  +   +       + +++   +  E            L 
Sbjct: 609 QQIFNPFFTTKANGTGLGLSVSYGIVNDHGGTIRVESKAGKGSTFKVSLP 658


>gi|322418889|ref|YP_004198112.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125276|gb|ADW12836.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 490

 Score =  133 bits (335), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 17/226 (7%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
               + S  + +  LL + + H+I +P+ AI     LL      +    D + ++   S 
Sbjct: 259 RNEAIRSEKMASVGLLAAGMAHEIGTPLAAIMGYSALLAEDLAADAEKSDYLRRITDESK 318

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------ID 110
               I    +  A       + +  L  +E+V+E          +  + E          
Sbjct: 319 RIDRIVRGLLDYARPKGALREEVPVLQLLEKVVELLSTQGVLKHLEVSVETEPGLPSLYG 378

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++L+NL M A  ++P+GGK+ +    S  + I  +  +G+    PE  +++ D 
Sbjct: 379 DPYQLEQLLINLIMNARDAMPQGGKLWLKGSCSGADVIIDVIDSGHGM-PPEHLSRVFDP 437

Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +        +       +A     RL  +         +  L 
Sbjct: 438 FFTTKEPGKGTGLGLAIAARIAESCGGRLDVQSELGKGSRFTLTLP 483


>gi|206900464|ref|YP_002250466.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
 gi|206739567|gb|ACI18625.1| alkaline phosphatase synthesis sensor protein PhoR [Dictyoglomus
           thermophilum H-6-12]
          Length = 815

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 19/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61
           ++I        + +   + + H++ +P+ AI    ELL       ++V    ++    + 
Sbjct: 456 RDISLAKELDRMKSEFVANVSHELKTPLTAIKGYSELLIKMNLPPEKVRNYYQIIYKESE 515

Query: 62  IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108
              +                      V+    + +     +   +    V     +    
Sbjct: 516 RLTQLINDLLEVSRIESGKIELKKEMVEIRKVIKERATFFQTQTSKHTIVLQFPEYPTFI 575

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  +   A++  NL   A    P GG + + V D   + +  ++  G             
Sbjct: 576 LGDNARLAQVFHNLLDNAIKYSPNGGNIWVRVSDKMEDIVIEVQDQGIGIPPEHLPHIFD 635

Query: 169 DGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +          +    V  +   +  ++            +  L +
Sbjct: 636 RFYRVDSSLRKSTSGTGLGLSIVKSIIEAHGGKISVASKVGEGTTFTIRLPR 687


>gi|319650573|ref|ZP_08004713.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317397754|gb|EFV78452.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 481

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 11/223 (4%)

Query: 2   AKNICFNLS-SMDL--VALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRL 55
            K     L  +  L  V  L + I H+I +P+ AI    +LL E       + ++  +  
Sbjct: 258 QKKTEEKLQNAEKLSVVGQLAAGIAHEIRNPLTAIKGFTQLLYEEHKGDFAEVILSELER 317

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDL 111
                   L   +              +  +  ++     ++  V    Q          
Sbjct: 318 IEGIVNDLLVLAKPQITEMEETCLTNVVKSVITLLNSQAVMENIVIELTQSPGEFYVKCE 377

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++L+N+   +  ++P GGK+ + ++   +  I S++  G      E+  ++ +  
Sbjct: 378 KDKIKQVLINIIKNSIEAMPAGGKINVDIRQEDHSVIISVEDEGIGI-PEERLAKLGEPF 436

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +   L     ++    +   L 
Sbjct: 437 YSTKEKGTGLGIMICKKIIKNHGGNLYIHSRENEGTTVRITLP 479


>gi|302344709|ref|YP_003809238.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
 gi|301641322|gb|ADK86644.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
          Length = 573

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 19/228 (8%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54
               + +  L +  +L + + H+I +P+ AI    +LLD                 +   
Sbjct: 339 ERQLMHAEKLASVGILAAGVAHEIGNPLAAIGGYAQLLDSDDTTPAERREFAGAIAEQTE 398

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDL 111
             +      L + R +      VD    +  +  +          +  +Q         +
Sbjct: 399 RINRIIRELLDYSRPSQYLGQPVDVNQAIEAVLNMFFTSKRLSQDNLSIQRDLARNLPKV 458

Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           S +R    +++LN+ + A  ++  GG++TIS ++            G      +    I 
Sbjct: 459 SLDRDQLQQVVLNMVINAAQAMAGGGQLTISTREQAGWLRMEFADTGPGIGPDKLPL-IF 517

Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +        +       +      R+            + LL 
Sbjct: 518 DPFFTTKPPGQGTGLGLSICDRIISAGGGRIEVASALGKGTTFTVLLP 565


>gi|158522818|ref|YP_001530688.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158511644|gb|ABW68611.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 595

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 66/230 (28%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
           M +       S  L A+  L + + H+I +P+ +I        E   +   + +    + 
Sbjct: 366 MRRLEKEVARSRRLAAIGKLAAGVAHEIRNPLSSIKGFATYFKEKFSDSDQDKKTADTMI 425

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                    +  +                       L  +E    +          +   
Sbjct: 426 YEVERLNRAVTQLLEFARPVSLEITEVEPGELIEHSLRLMENDFTNKGIESTARIQTTRP 485

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKF 164
                     ++LLNL++ A  ++  GG++T+++ D  N       +   G+     +  
Sbjct: 486 VIRTDRDRLNQVLLNLYLNAVDAMESGGRLTVTLSDGDNNDTVTIDVTDTGHGIAEKD-M 544

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            QI D    +      +    V  L       +  E  + H       + 
Sbjct: 545 EQIFDPYFTTRSRGTGLGLAIVYKLVESLGGTITVESREGHGTTFHIRVP 594


>gi|153006251|ref|YP_001380576.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152029824|gb|ABS27592.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 573

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           +A +      +  + A   +  R+ H+I +P+  I  S+E L +           I DE 
Sbjct: 341 LAASRARLAQAERVAAWREVARRLAHEIKNPLTPIAMSVETLRDAHARARPDFGEIFDEG 400

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            + I          +              + +   ++ Q +           V     + 
Sbjct: 401 TRAIGEEVRRLKRIVDEFSRFARLPAPERTPVAPDELVQSVLALFPSAPAGVVVAREVEA 460

Query: 110 D------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     +  ++LLNL   A  ++P GG + ++ +   +   FS+   G     PE 
Sbjct: 461 GLPAVLADRDQVVQVLLNLVRNALDAMPGGGTLRVAARGEGSAVAFSVSDTGPGV-RPED 519

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +      +       +A E+   L            +  L 
Sbjct: 520 RPRVFEPYFTTKEGGTGLGLAIAQRIAEEHGGTLELRSAPGEGATFTLTLP 570


>gi|315136851|dbj|BAJ44010.1| sensory histidine kinase AtoS [Escherichia coli DH1]
          Length = 590

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 77/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 355 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 414

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 415 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 474

Query: 112 SRERA----KILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++  RG     + Q S ++   S++ NG          +
Sbjct: 475 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 533

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 534 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 581


>gi|300931435|ref|ZP_07146764.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 187-1]
 gi|300460805|gb|EFK24298.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 187-1]
 gi|323973080|gb|EGB68274.1| hsp90-like protein [Escherichia coli TA007]
          Length = 593

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|258514299|ref|YP_003190521.1| sensory histidine kinase AtoS [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778004|gb|ACV61898.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 611

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 61/217 (28%), Gaps = 13/217 (5%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAII 62
               L AL  L + + H+I +P+ +I   ++   +  I        + + +         
Sbjct: 391 RQERLAALGKLVAGVAHEIRNPLTSISCYIQHWQDQNIPSPKALSTMFREVTRLDTIVDQ 450

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
            L F + A       D    + D+    ++          ++      +  +  +I   L
Sbjct: 451 LLYFAKPAEAKFIKKDINFLIEDVLGFFQEVYKDKCNFVRNYQSNLPLVWIDPEQIERVL 510

Query: 123 FMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDGNVESTID 177
             +   ++    +       ++          S+   G     PE   Q+ D    +   
Sbjct: 511 ANMFFNAMQAIQEEITVTVSTEYCAAKDKVYVSVSDTGCGI-PPENLAQLFDPFFSTRPK 569

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +   +  E         S  L+
Sbjct: 570 GTGLGLAIAHEIIQAHGGHIEVESEVGRGAKFSFYLK 606


>gi|147677757|ref|YP_001211972.1| hypothetical protein PTH_1422 [Pelotomaculum thermopropionicum SI]
 gi|146273854|dbj|BAF59603.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI]
          Length = 796

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 68/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIR 54
           + +          L     + + + H++ +P+ A+    +LL E   ++  +    ++I 
Sbjct: 566 LRRTQKAVRERERLAIIGQMAAGMAHEVKNPLTAVRGFTQLLKEKCPDNPKLVSYAEIIL 625

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTG 106
                A   +                  L  + + I   ++    +         V    
Sbjct: 626 EEIDRANSVITEFLQLARPKQPALKRQSLNSLVEEIAAIVSSQAFLKNIKVEYECVDNLP 685

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKF 164
             +    +  ++LLN+   A  ++P GG + +       +      +   G      E+ 
Sbjct: 686 LCMLDRDQIKQVLLNMCQNAIEAMPGGGILVMKTGFLPAQKEVFIDINDTGCGI-PREQI 744

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I      +  D   +       +   +K R+  +  +         L 
Sbjct: 745 EKIGVPFFTTKADGTGLGLSISYSIIGAHKGRVEVDSKEGKGTKFRIYLP 794


>gi|300981268|ref|ZP_07175445.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 200-1]
 gi|300307632|gb|EFJ62152.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 200-1]
 gi|324013106|gb|EGB82325.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 60-1]
          Length = 593

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|315285841|gb|EFU45281.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 110-3]
 gi|315298047|gb|EFU57316.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 16-3]
          Length = 593

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|323701194|ref|ZP_08112869.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533796|gb|EGB23660.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 432

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 76/219 (34%), Gaps = 15/219 (6%)

Query: 10  SSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAII 62
            S  L A  L+ + I H+I +P+  I    +L+ +    + V+Q     ++  ++ +  I
Sbjct: 212 ESEKLAAIGLMSAGITHEIKNPLTVIQGFAQLIKKNVEGERVLQDYITTILEETNQAIRI 271

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KIDLSRER 115
              F++LA      +     +  + +V            ++   +        +   ++ 
Sbjct: 272 INDFLKLARFREPVLTKQSVVKLMGEVRASIEPQALANNITLEYKGADILPECMFDKQQL 331

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++L+NL   A  ++  GG +T+S     N+    +K  G      E   ++      + 
Sbjct: 332 KQVLINLCQNAIEAMTDGGILTLSSGSHCNDTFIEIKDTGRGIPC-ESLNKLGLPFFTTK 390

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +  R+  +  +         L 
Sbjct: 391 EHGTGLGLNICYAIISAHNGRIEVDSREGQGSSFRVYLP 429


>gi|300936770|ref|ZP_07151663.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 21-1]
 gi|300458100|gb|EFK21593.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 21-1]
          Length = 593

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|227887277|ref|ZP_04005082.1| sensory histidine kinase AtoS [Escherichia coli 83972]
 gi|300983212|ref|ZP_07176489.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 45-1]
 gi|301048967|ref|ZP_07195956.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 185-1]
 gi|227835627|gb|EEJ46093.1| sensory histidine kinase AtoS [Escherichia coli 83972]
 gi|300299218|gb|EFJ55603.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 185-1]
 gi|300408613|gb|EFJ92151.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 45-1]
 gi|315292173|gb|EFU51525.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 153-1]
          Length = 593

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|328553705|gb|AEB24197.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus amyloliquefaciens TA208]
 gi|328911447|gb|AEB63043.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus amyloliquefaciens LL3]
          Length = 606

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     L S  L     L + I H+I +P+ AI   L+L+       E     +    S
Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEENEHYFEIVFSELS 440

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
              +I  + + LA     +V   + L  I       +          ++  +  + + ++
Sbjct: 441 RIELILSELLMLAKPQHNAVKERVNLKKIISEVTALLETQANLKGIFIKTDYERDSMFIN 500

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ ++          A  S+P GG V I + + +     ++K  G+         +I +
Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVHILMTEDEYSVNVTVKDEGDGIPEN-VLKRIGE 559

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       L   ++  +  +   D          K
Sbjct: 560 PFLTTKEKGTGLGLMVTFNLIKNHQGAIQVDSKPDKGTAFHITFPK 605


>gi|323701175|ref|ZP_08112850.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533777|gb|EGB23641.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 459

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQ 51
           M+  +   +  ++    L   L S + H++ +P+  I    E L +        E   + 
Sbjct: 217 MSAQLKEKIDDIERLDRLRQELVSDVSHELRTPLTVIQGFAEALHDGIVKSKEQEKFYLH 276

Query: 52  LIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            I   +      +             M        +    I +  ++Q+      + K +
Sbjct: 277 NIMDEAGRLKDLVNDILKLRSMEVGHMEEMEFVVLNKLVNITVERMKQIASAKKTIVKTI 336

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A +    GG V + +   +     ++K NG     
Sbjct: 337 TPPEAITVFGNIDRLKQVLTNLVDNAISHSYAGGMVAVELGLREGFAFIAVKDNGPGIPQ 396

Query: 161 PE---KFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    + +    +   +       +    V  +   +  ++  E         +  L 
Sbjct: 397 EELENIWERFYKVDKSRSRRGTGSGLGLSIVRKIVEVHGGKVTVESELGKGATFTVFLP 455


>gi|301022435|ref|ZP_07186317.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 69-1]
 gi|300397536|gb|EFJ81074.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 69-1]
          Length = 593

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    +++ 
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|300903601|ref|ZP_07121519.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 84-1]
 gi|300948914|ref|ZP_07162976.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 116-1]
 gi|300958904|ref|ZP_07171008.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 175-1]
 gi|301306548|ref|ZP_07212611.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 124-1]
 gi|301647690|ref|ZP_07247484.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 146-1]
 gi|300314467|gb|EFJ64251.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 175-1]
 gi|300404337|gb|EFJ87875.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 84-1]
 gi|300451610|gb|EFK15230.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 116-1]
 gi|300838208|gb|EFK65968.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 124-1]
 gi|301074220|gb|EFK89026.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 146-1]
 gi|315255154|gb|EFU35122.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 85-1]
          Length = 593

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|188494704|ref|ZP_03001974.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           53638]
 gi|188489903|gb|EDU65006.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           53638]
          Length = 514

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 279 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 338

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 339 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 398

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 399 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 457

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 458 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 505


>gi|300897714|ref|ZP_07116111.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 198-1]
 gi|300358554|gb|EFJ74424.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 198-1]
          Length = 593

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    +++ 
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|217967138|ref|YP_002352644.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
 gi|217336237|gb|ACK42030.1| GAF sensor signal transduction histidine kinase [Dictyoglomus
           turgidum DSM 6724]
          Length = 815

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 62/232 (26%), Gaps = 19/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           ++I        + +   + + H++ +P+ AI    ELL +            Q+I   S 
Sbjct: 455 RDISLAKELDRMKSEFVANVSHELKTPLTAIKGYSELLMKMNLPPERVRNYYQIIYKESE 514

Query: 59  SAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108
                +  +                 V+    + +     +   +    V     +    
Sbjct: 515 RLTQLVNDLLEVSRIESGRIELKKDMVEIRKIIKERATFFQTRTSKHTIVLQFPEYPTFV 574

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  S    ++  NL   A    P GG V + V D   + +  ++  G             
Sbjct: 575 LGDSARLTQVFHNLLDNAIKYSPNGGNVWVRVADKMEDILIEVQDQGVGIPPEHLPHIFD 634

Query: 169 DGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +          +    V  +   +  ++            +  L +
Sbjct: 635 RFYRVDSSLRKSTSGTGLGLSIVKSIVEAHGGKISATSKVGEGTTFTIRLPR 686


>gi|298504597|gb|ADI83320.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 411

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 14/226 (6%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A+     +     L  L  + + + H++ +P+  I    +LL E   +DE  +   L   
Sbjct: 184 AQEHRLEMVRRERLAQLGEMGAVLAHEVRNPLSGIKGYAQLLMERSNDDENREFSALIVT 243

Query: 59  SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEK 108
            AI           + R   G  G +     +  +  +++             ++     
Sbjct: 244 EAIRLESLVSDLLAYARPEPGPEGPLQVNAVIDHVLALVDPEARAAGVTIAASLAEGLAT 303

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++LNL      ++P GG +T+  +        S+  +G+     ++  +I 
Sbjct: 304 RGNEARLEQLILNLAKNGIQAMPDGGTLTVVTRREGKTVEISVADHGHGIAPHDR-ERIF 362

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +       +A  +   +          V    L 
Sbjct: 363 TPFFTTKARGSGLGLAVCRKIAEAHGGSISVADNPGGGTVFRVTLP 408


>gi|262198819|ref|YP_003270028.1| GAF sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262082166|gb|ACY18135.1| GAF sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 602

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 72/227 (31%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
           +A++         L ++  + + + HD+ +P+  I    +L+   D+    +  ++ I  
Sbjct: 366 LARSRSARSKQERLASIGRMLASVLHDLKTPMTIISGYAQLMAQIDDADQREAYVEQILR 425

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKI 109
                    + + L       +       +         +       + ++ +       
Sbjct: 426 QFDLMKGMTQEVLLFARGESELLVRRIFVNKFMDELLTQLNHALAGRNIKLTIDPEYRDT 485

Query: 110 DLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               E+   +++ NL   A  ++P GG + I  +      +F ++ +G     PE   ++
Sbjct: 486 AHFDEQKILRVMHNLARNAADAMPEGGSLAIRTKTKDGSLVFEVEDSGGGI-PPELDGRL 544

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D           +    V  +  E+   +    +       +  L 
Sbjct: 545 FDLFSSGKQGGTGLGLAIVKKIIEEHGGDITYRSVQGQGTCFTIRLP 591


>gi|238794689|ref|ZP_04638294.1| Signal transduction histidine-protein kinase atoS [Yersinia
           intermedia ATCC 29909]
 gi|238725995|gb|EEQ17544.1| Signal transduction histidine-protein kinase atoS [Yersinia
           intermedia ATCC 29909]
          Length = 634

 Score =  132 bits (333), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 72/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
            K +   +  +  L  L  L + + H++ +P+ AI   +++L +   + + ++   +   
Sbjct: 399 RKEVQRRIEQAERLATLGELMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILK 458

Query: 57  -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID 110
                +      L F R   G    V+    L +   +++      +    V       D
Sbjct: 459 EVQSINRVIQQLLDFSRPRIGRYHQVNLNQILRESLILVKTKGVEARVDFHVQLDESLCD 518

Query: 111 LSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +   +   L  +   ++            + +  ++    ++K NG      +  ++
Sbjct: 519 IEADGELLKQVLLNILINAVQSIAARGEITISTKKRDEHHQQITIKDNGCGI-TDDIKSK 577

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +      +       +   +   +  E   +       +L 
Sbjct: 578 VFDPFYTTKPSGTGLGLSISQRIITSHDGEIRLESQPNKGTTFIIILP 625


>gi|323701691|ref|ZP_08113363.1| histidine kinase [Desulfotomaculum nigrificans DSM 574]
 gi|323533464|gb|EGB23331.1| histidine kinase [Desulfotomaculum nigrificans DSM 574]
          Length = 298

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 73/215 (33%), Gaps = 12/215 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            L+++  V  L +   H+I +P+  +   L+LL E   +    +L +L+          +
Sbjct: 71  RLATLSAVGELAAGAAHEIRNPLTTVRGFLQLLREKVTDPRTAELSQLAIEEVDHINNIV 130

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----------LSRERA 116
                     +  IG  DI Q+I +   +     +                    +++  
Sbjct: 131 TSMLQLAKPENGQIGPLDINQIINETWDLYTYSGIRKGISYEKELAYGLPLLAGNAKQIK 190

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL   A  +   G K+ ++     +    S+   G     PE+  +I +    ++ 
Sbjct: 191 QVLLNLLKNAENACNPGDKIKVNTYVDNHVICLSVTDTGKGI-VPEQLEKIFNPFYTTSS 249

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +       +  +++  +  +         + 
Sbjct: 250 SGTGLGLAICNRIVADHQGTIKVDSQPGMGTTFTV 284


>gi|302038577|ref|YP_003798899.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300606641|emb|CBK42974.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1058

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 20/233 (8%)

Query: 1    MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-- 53
            M +          S  L ++  L + + H+I +P+G I N L  + +  +     +    
Sbjct: 815  MTETKKLEQQIRNSEKLASVGKLAAGVAHEINNPLGGILNCLYNMRKGTLSPSRQEEYLA 874

Query: 54   ------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---- 103
                  R         L F +         D    +  +  + +      +    +    
Sbjct: 875  SMEDGLRRVQRIVRQLLDFSQQHNPELALADINQVVNRVLLLTDHLFVPHRVQLETALSP 934

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               E +       ++L+NL + A  ++  GG +TI     +   +  ++ +G        
Sbjct: 935  DIPELMIDRHMMEQVLMNLVLNAIQAMRTGGVLTIRTSMDEAHCLVRIQDSGCGISSS-V 993

Query: 164  FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D    +    +   +     + +   +  R+  E         +  + 
Sbjct: 994  LPRIFDPFFTTKNEGEGTGLGLSVSLGIVERHGGRIFVESEVGKGTTFTVSIP 1046


>gi|16131833|ref|NP_418431.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli str. K-12 substr. MG1655]
 gi|89110035|ref|AP_003815.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli str. K-12 substr. W3110]
 gi|170083464|ref|YP_001732784.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli str. K-12 substr. DH10B]
 gi|238903060|ref|YP_002928856.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli BW2952]
 gi|254039260|ref|ZP_04873309.1| sensor protein ZraS [Escherichia sp. 1_1_43]
 gi|256026319|ref|ZP_05440184.1| sensor protein ZraS [Escherichia sp. 4_1_40B]
 gi|300947389|ref|ZP_07161582.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300954765|ref|ZP_07167195.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|301023374|ref|ZP_07187164.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|301645740|ref|ZP_07245661.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|307140695|ref|ZP_07500051.1| sensor protein ZraS [Escherichia coli H736]
 gi|331644740|ref|ZP_08345858.1| sensor protein ZraS [Escherichia coli H736]
 gi|417167|sp|P14377|ZRAS_ECOLI RecName: Full=Sensor protein zraS
 gi|396342|gb|AAC43101.1| ORF_o465 [Escherichia coli str. K-12 substr. MG1655]
 gi|1790436|gb|AAC76977.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli str. K-12 substr. MG1655]
 gi|85676066|dbj|BAE77316.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli str. K12 substr. W3110]
 gi|169891299|gb|ACB05006.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli str. K-12 substr. DH10B]
 gi|226838495|gb|EEH70525.1| sensor protein ZraS [Escherichia sp. 1_1_43]
 gi|238863536|gb|ACR65534.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli BW2952]
 gi|260451168|gb|ACX41590.1| histidine kinase [Escherichia coli DH1]
 gi|299880894|gb|EFI89105.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|300318264|gb|EFJ68048.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300452993|gb|EFK16613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|301075989|gb|EFK90795.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|315138560|dbj|BAJ45719.1| sensor protein ZraS [Escherichia coli DH1]
 gi|315617368|gb|EFU97974.1| sensor protein zraS [Escherichia coli 3431]
 gi|323933955|gb|EGB30429.1| hsp90-like protein [Escherichia coli E1520]
 gi|323938880|gb|EGB35100.1| hsp90-like protein [Escherichia coli E482]
 gi|331036040|gb|EGI08277.1| sensor protein ZraS [Escherichia coli H736]
          Length = 465

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 238 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 297

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 298 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 357

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 358 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 416

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 417 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 455


>gi|56419479|ref|YP_146797.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|261419163|ref|YP_003252845.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC61]
 gi|297530867|ref|YP_003672142.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. C56-T3]
 gi|319765980|ref|YP_004131481.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC52]
 gi|56379321|dbj|BAD75229.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|261375620|gb|ACX78363.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC61]
 gi|297254119|gb|ADI27565.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. C56-T3]
 gi|317110846|gb|ADU93338.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. Y412MC52]
          Length = 738

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 72/226 (31%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
            K +   L     +++V  L + I H+I +P+ A+   ++LL    +         ++  
Sbjct: 502 RKEMELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSIDGDYSMYFNVIMSE 561

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111
                 I  +F+ LA               ++     +    +  + ++   +      +
Sbjct: 562 LKRIESIITEFLVLAKPQAVQYKQNDICKIMQDTIDLISAQAMMHNVQIIADFERGLPPV 621

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             E  ++          A   +P+GG +T+ +  +      S+   G      +K  ++ 
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGDITVRITRAGCYVRISITDQGCGI-PKDKIKKLG 680

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +  E++ ++  E            L 
Sbjct: 681 EPFYTTKERGTGLGLMVSYKIIEEHQGKIEVESEVGVGTTFHITLP 726


>gi|229130818|ref|ZP_04259767.1| hypothetical protein bcere0015_52460 [Bacillus cereus BDRD-Cer4]
 gi|228652623|gb|EEL08512.1| hypothetical protein bcere0015_52460 [Bacillus cereus BDRD-Cer4]
          Length = 590

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTGDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG       + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGGISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIRSEVGVGTTVTIYLPK 567


>gi|30020746|ref|NP_832377.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|29896298|gb|AAP09578.1| Sporulation kinase [Bacillus cereus ATCC 14579]
          Length = 407

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 160 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 219

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 220 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTGDKDIIIEC 279

Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG       + + +  I  +   G      E+  ++ +
Sbjct: 280 SENQLKQVFINILQNSIEAMPNGGGISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 338

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 339 PFYSTKEKGTGIGLMLSYKIIESHQGTISIRSEVGVGTTVTIYLPK 384


>gi|312967521|ref|ZP_07781736.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           2362-75]
 gi|312287718|gb|EFR15623.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           2362-75]
          Length = 605

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 370 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 429

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 430 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 489

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 490 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 548

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 549 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 596


>gi|39995579|ref|NP_951530.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982342|gb|AAR33803.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 419

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 14/226 (6%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A+     +     L  L  + + + H++ +P+  I    +LL E   +DE  +   L   
Sbjct: 192 AQEHRLEMVRRERLAQLGEMGAVLAHEVRNPLSGIKGYAQLLMERSNDDENREFSALIVT 251

Query: 59  SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEK 108
            AI           + R   G  G +     +  +  +++             ++     
Sbjct: 252 EAIRLESLVSDLLAYARPEPGPEGPLQVNAVIDHVLALVDPEARAAGVTIAASLAEGLAT 311

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++LNL      ++P GG +T+  +        S+  +G+     ++  +I 
Sbjct: 312 RGNEARLEQLILNLAKNGIQAMPDGGTLTVVTRREGKTVEISVADHGHGIAPHDR-ERIF 370

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +       +A  +   +          V    L 
Sbjct: 371 TPFFTTKARGSGLGLAVCRKIAEAHGGSISVADNPGGGTVFRVTLP 416


>gi|225175068|ref|ZP_03729064.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169244|gb|EEG78042.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Dethiobacter alkaliphilus AHT 1]
          Length = 376

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 67/225 (29%), Gaps = 15/225 (6%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRL 55
               ++  + L   + + I H++ +P+  +   ++L+                ++  +  
Sbjct: 140 QQARHMEKLMLAGEIAAGIAHEVRNPLTVVQGYIQLISAKCKKQCNSEDSFSLLLDELNR 199

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----L 111
           ++      L+F R        V+    +     +I             +    +      
Sbjct: 200 ANDIISDFLRFSRPDQPQKSQVNPNEVIESSASLIYGEAMRHNVRIFLYPDADMPTVLLD 259

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVD 169
             +  ++ LNLF  A  ++P+GG +T+     K+       +  +G          ++  
Sbjct: 260 KDQLIQVFLNLFHNAIQAMPQGGTITVYTGYDKHLDLVTIKVLDSGTGMDAQTA-QRLFS 318

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +       + H +   +  +            L 
Sbjct: 319 PFYTTKENGTGLGLSISQSIIHAHGGEIKVDSTPGQGTEFIITLP 363


>gi|91202528|emb|CAJ72167.1| similar to histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 440

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSM 58
           +++   L  +  L A+  + + I H+I +P+  I     LL  +    D   +L++    
Sbjct: 182 RDLEMRLRKADKLAAIGAMAASIAHEIRNPLNGIEGFSALLARDFEDSDPRKKLVKNIIQ 241

Query: 59  SAIIRLKFMRLAFGYTGSVDSL--------------IGLGDIEQVIEDFIAVDKRVQVSW 104
                 K +     +   V                   + +             +   + 
Sbjct: 242 GTKNLNKTVTELLVFARPVRLSLMNSRISEILDRTLFFIKEDMNRNGIDTISIHKEYGAD 301

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                  + +  ++ LNL + A  S+  GG +T+  +  + E         +K  G    
Sbjct: 302 DYCLKCDAEKLQQVFLNLCLNAIQSMTCGGHLTVFTRTIEGENDNGVVQIGIKDTGVGI- 360

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   ++ D    +  D   I    V  +   +  ++  E  +         L 
Sbjct: 361 KKEVVRKMFDLFFTTKQDGTGIGLAIVNKIVEAHNGKIFVESEEGKGTTFYINLP 415


>gi|323171897|gb|EFZ57541.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           LT-68]
          Length = 605

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 370 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 429

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 430 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 489

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 490 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 548

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 549 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 596


>gi|170770119|ref|ZP_02904572.1| sensor protein ZraS [Escherichia albertii TW07627]
 gi|170121001|gb|EDS89932.1| sensor protein ZraS [Escherichia albertii TW07627]
          Length = 528

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 301 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 360

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        +        
Sbjct: 361 VSELLELVKPTHLALQTVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPQIQADPDRL 420

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G +++   +S      S+  +G      +    I      + 
Sbjct: 421 TQVLLNLYLNAIQAIGQHGVISVVANESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 479

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 480 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 518


>gi|298251742|ref|ZP_06975545.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297546334|gb|EFH80202.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 489

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA ++     S  L   L S + H++ +P+  I   LELL +       E +  +   + 
Sbjct: 232 MADSLS---RSEQLRRNLVSDVAHELRNPLMNIRGYLELLQDQVLEPTPETLASLYEETS 288

Query: 59  SAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  ++                   + I    ++ V          + VS   +  
Sbjct: 289 LLNRLVADLQDVSLAEAGQLHLTRQPIELADIASQAVQIVQPHLAEKQLTLHVSIPSDLP 348

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
            +  ++ ++   L      A    P  G++ ++   S+     S++  G           
Sbjct: 349 HIEADQERVAQILRNLLSNAIRHTPSQGEICLAAGLSEAGVHISVRDTGVGIAPEHLPYL 408

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   +  ++  E         +  L 
Sbjct: 409 FERFYRADFSRARATGGTGLGLAIVKQVVQAHGGQVSVESQVGKGTCFTFTLP 461


>gi|269926600|ref|YP_003323223.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790260|gb|ACZ42401.1| GAF sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 579

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 71/237 (29%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIR 54
           AK I     +  L + L   + H++ +PI AI      L           ++ + +  I 
Sbjct: 341 AKTIEAAKEADKLRSQLLGTVSHELRTPIAAIQGFASSLKCADEVEIPKEMQQDWINEIE 400

Query: 55  LSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            ++      +  +           R+   +    D L  L    Q+I +   +  +V  +
Sbjct: 401 QNAERLRRLVTDLLDLSRLESGALRMQMEWQDMNDVLDELAPDLQMIAEGRNLVVQVSDT 460

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               K D      ++L NL   A    P G  + +  +  +N     +   G     PE 
Sbjct: 461 LPLIKCDAE-RIGQVLRNLVENARKFSPPGSNIVVGAERYENGIRVGVLDEGEGI-PPEY 518

Query: 164 FTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +   +             +       +   +  R+  E       +    L 
Sbjct: 519 HDKIFERFFQIEGASFRPQKGTGLGLAICRNIVEAHGGRIWVESSPGKGSIFYFTLP 575


>gi|194436351|ref|ZP_03068453.1| sensory box histidine kinase AtoS [Escherichia coli 101-1]
 gi|253772857|ref|YP_003035688.1| sensory histidine kinase AtoS [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162231|ref|YP_003045339.1| sensory histidine kinase AtoS [Escherichia coli B str. REL606]
 gi|194425079|gb|EDX41064.1| sensory box histidine kinase AtoS [Escherichia coli 101-1]
 gi|242377855|emb|CAQ32622.1| AtoS sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323901|gb|ACT28503.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974132|gb|ACT39803.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli B str. REL606]
 gi|253978299|gb|ACT43969.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli BL21(DE3)]
 gi|323961525|gb|EGB57133.1| hsp90-like protein [Escherichia coli H489]
 gi|332344001|gb|AEE57335.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           UMNK88]
          Length = 608

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|170019467|ref|YP_001724421.1| sensory histidine kinase AtoS [Escherichia coli ATCC 8739]
 gi|169754395|gb|ACA77094.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Escherichia coli ATCC 8739]
          Length = 608

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|256830432|ref|YP_003159160.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579608|gb|ACU90744.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 486

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 74/234 (31%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEV 49
           + +     L    L +L  L S I H + +P+  I  S ++L          +  +  ++
Sbjct: 248 LERRQSQLLQEKKLASLGVLTSGIAHQLNNPLNNISTSCQILQEDLEAALPVDPALTRQM 307

Query: 50  MQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW- 104
           +  I      +       L+F R       SV     +     ++   +    R+     
Sbjct: 308 LDNIYQEVSRSRDIVKGLLEFARETDFCLKSVPLQAVVQRAVTLVSSEVPTGVRILTDIP 367

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFP 161
                   ++   ++LLNL + A  ++   G +++S        E +  +   G     P
Sbjct: 368 ADIVLPLDNQRFQEVLLNLMINAIHAITPPGVISLSATSEPGSTEAVLQVTDTGAGI-AP 426

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   +I D           +    V  +  ++   +  E         +  L +
Sbjct: 427 EHMGRIFDPFFTLKDTGTGLGLSVVFGIIKKHGGTIGVESAVGEGTTFTIRLPR 480


>gi|78222608|ref|YP_384355.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter metallireducens GS-15]
 gi|78193863|gb|ABB31630.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter metallireducens GS-15]
          Length = 547

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59
           M +N+      + ++  L +R+ H+I +P+ AI  S +L+ +   I +   +L  +    
Sbjct: 311 MEENLK-RADRLAVIGELSARMAHEIRNPLAAISGSAQLIAQGDGIPEADRELFAIVLRE 369

Query: 60  AIIRL----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           A              +  +   G     D +  +  +      F  V    +V       
Sbjct: 370 ADRLNGLITDFLAYARPSQPEKGPVNLTDLVGEIVSLVTPDRRFEQVRIINRVEPDFTLP 429

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---------NIFSLKINGNLARF 160
               +  ++  NLF+ A  ++  GG +T+  +                 ++  +G+    
Sbjct: 430 IDPDQFRQVFWNLFVNAAEAMSEGGTITVDAERIDEIRSDGEPRSAYRITVADDGSGMN- 488

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E  ++I +    S      +    V  +   +  R+  E  +    +    + 
Sbjct: 489 QETISRIFEPFYTSKASGTGLGLATVYRIIEAHGGRITVESAEGTGTIFIIFIP 542


>gi|253700202|ref|YP_003021391.1| histidine kinase [Geobacter sp. M21]
 gi|251775052|gb|ACT17633.1| histidine kinase [Geobacter sp. M21]
          Length = 829

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 72/227 (31%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            +N+   +  +D L +L  L + I H++ +P+  I   L+ L        ++  +  + +
Sbjct: 603 RENLQEEMMRLDRLASLGKLSAGIAHEVRNPLTGISLLLDDLHDQASSSPEDRDLIKKAL 662

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             I          L +           D    + D   ++       K       GE   
Sbjct: 663 AEIERVEKLVNALLNYSSPVRADFRECDLNRLVCDTVLLMRRQCERQKVQLSVAEGEVPP 722

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           L  +     + +LN+   A  +LP GG++ ++        +  +  +G      +    I
Sbjct: 723 LRLDPEKIKQAVLNIVKNAQEALPEGGRIEVATSVQDGYAVIGIGDDGRGIASRDLPL-I 781

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E++ ++  E         +  L 
Sbjct: 782 FEPFFTKKGAGTGLGLSITQRIVEEHRGKIRVESAPGAGTRFTIELP 828


>gi|229917679|ref|YP_002886325.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469108|gb|ACQ70880.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 58/222 (26%), Gaps = 19/222 (8%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
            L   L S + H++ +P+ +I    ELL          ++ + +I   ++     +  + 
Sbjct: 421 RLKTELVSTVSHELRTPLTSIIGFTELLRFRKLSAERSEKYLGMIHQETLRLEDLISNLL 480

Query: 69  LAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                     +     +                          +             ++ 
Sbjct: 481 DVQRMESGQQTYHNEPERLSAILEQAIAVHQGSSQHHHITFDCTEDVYVYGDRTRLNQLF 540

Query: 120 LNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173
           +NL   A    PRGG++ + V  +  +    S++ +G                       
Sbjct: 541 MNLLHNAVKYSPRGGEINVRVACERPDWIDISIEDHGIGIPQTALPKLFDKFYRVDNSAS 600

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I    +       +A  +   +          + +  L K
Sbjct: 601 RKIGGTGLGLAICKEIAEGHGGTIHATSNIGKGSMFTVSLPK 642


>gi|170767436|ref|ZP_02901889.1| sensory box histidine kinase AtoS [Escherichia albertii TW07627]
 gi|170123770|gb|EDS92701.1| sensory box histidine kinase AtoS [Escherichia albertii TW07627]
          Length = 608

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 74/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDLMHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLDFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLT-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  H    S +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGHGATFSLILP 599


>gi|212639816|ref|YP_002316336.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561296|gb|ACJ34351.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 475

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 72/225 (32%), Gaps = 12/225 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +      ++LV  L +   H+I +P+  I   ++LL E   ++E      +     
Sbjct: 246 MLERMEIQTQKLELVGTLAASTAHEIRNPLAGIKGFIQLLSEKHKDNESQLYFSVIQNEI 305

Query: 61  IIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKI 109
                 +                 D    +  I  +IE    +   V             
Sbjct: 306 TRINDIVNEFLILGKPTAQKLETCDLNYIVQSIHPMIESQAHLHNVVYTFQRADVPLPIR 365

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++LNL   A  ++  GG++TIS+    +  +  +  NG      +  +++  
Sbjct: 366 CSKDHLKQVVLNLAKNAIEAMADGGELTISLTKQNDWAVLHVIDNGGGI-PNDIKSKLFQ 424

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             V S      +       +   ++  +    I+     ++  L 
Sbjct: 425 PFVTSKQTGTGLGLVVCKRIVDMHEGTIDIHSIEKKGTTITVRLP 469


>gi|159900772|ref|YP_001547019.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893811|gb|ABX06891.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 804

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 21/233 (9%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            + +   L  +  L A+  L + + H++ +P+ +I    ELL    D        +  I 
Sbjct: 417 RRRLELQLLQAEKLSAIGQLVAGVAHELNNPMTSIKGFAELLLRRKDLDDDARTDLNYIN 476

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111
             +  A   +  +            L+ +  +        +   RV       + +    
Sbjct: 477 NQAERAARIVTNLLTFAREHQPQRVLVDVNKVIDDTLSLHSYHLRVDNIKVQRQFEPELP 536

Query: 112 -----SRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +  ++ LNL   AH ++   G    +T+  +   +E   ++   G        
Sbjct: 537 TTVADPYQLQQVFLNLIGNAHQAMAEKGGGGFLTVKTERVDDEIRINIGDTGPGI-PQHL 595

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +        +       + H++   +  + + +        L 
Sbjct: 596 VGRIFDPFFTTKPVGKGTGLGLSICYNILHDHGGNIWVDSVANEGTTFHLALP 648


>gi|332093888|gb|EGI98942.1| signal transduction histidine-protein kinase atoS [Shigella boydii
           5216-82]
          Length = 555

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 74/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 320 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 379

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 380 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 439

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S  +   S++ NG          +
Sbjct: 440 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDLQQAISIEDNGCGIDLS-LQKK 498

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 499 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 546


>gi|311029478|ref|ZP_07707568.1| two-component sensor histidine kinase [Bacillus sp. m3-13]
          Length = 552

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 71/223 (31%), Gaps = 11/223 (4%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQL 52
            +     + S  L  +  L + + H+I +P+  +   + LL +   E E        ++ 
Sbjct: 323 KRTEEALMQSEKLSVIGELAAGVAHEIRNPVTVLKGFVHLLSKESREKEFFTIMDKELER 382

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-DKRVQVSWTGEKIDL 111
           I   +   +   K   +        + +  +    +       V  + V           
Sbjct: 383 INQITNEFMALAKPQAIKIKRQNLKELIQEVCIFLESEAFIHQVVMEVVHFEEYIWLECE 442

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++L+NL      ++P GGK+TI  Q         +K  GN     E   ++    
Sbjct: 443 PNQIKQVLINLIKNGMEAMPDGGKITIDTQVVDGYVNLVIKDEGNGI-PEEVINKVGQPF 501

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +     + +   +  +L  +  +     +  LL 
Sbjct: 502 FTTKEQGTGLGLMVSMKIIENHGGQLTIQSEEKVGSTVEILLP 544


>gi|78223873|ref|YP_385620.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter metallireducens GS-15]
 gi|78195128|gb|ABB32895.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter metallireducens GS-15]
          Length = 395

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 70/227 (30%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K     + S  L +L  L + + H+I +P+ +I+   +LL     E E +  I     
Sbjct: 166 LQKAQAEIVQSEKLASLGYLSAGMAHEIRNPLNSINLFAQLLKSGCEEPEKLDYIDKILK 225

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107
                       L   +        V     +    +V      +      R        
Sbjct: 226 EVDRIDDIMRKLLDASKRPRFQLSEVRLDRVIDATLEVFRPQTTLYGIEVVRAFRRVPPP 285

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I  NLF+ A   +  GG + + +     E I  +   G     P+   +I
Sbjct: 286 FQADPSEIEQIFTNLFLNAIHEMQEGGTLAVLLDHDDREVIIRISDTGRGM-PPDNVKKI 344

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V+ +    + ++  E  D+     +  L 
Sbjct: 345 FDPFFTTKTSGSGLGLAVVLRIVKTYQGKITVEKSDETGTTFAIRLP 391


>gi|110642429|ref|YP_670159.1| sensory histidine kinase AtoS [Escherichia coli 536]
 gi|191170106|ref|ZP_03031660.1| sensory box histidine kinase AtoS [Escherichia coli F11]
 gi|110344021|gb|ABG70258.1| sensor protein AtoS [Escherichia coli 536]
 gi|190909622|gb|EDV69207.1| sensory box histidine kinase AtoS [Escherichia coli F11]
          Length = 608

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|261404707|ref|YP_003240948.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261281170|gb|ACX63141.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 574

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 68/222 (30%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLI 53
           +    N+  + LV  + + I H+I +P+  +   L+L+ E   +          E +   
Sbjct: 336 RTEFINVERLSLVGQMAASITHEIRNPMAVVRGFLQLMKEKSPDTLDHYYRIVMEELDRA 395

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112
                  +   +            D +  L  +     +    +  +++ +   E    +
Sbjct: 396 NGIISDFLSLAQNRAAEKEECHLHDIIHELSPLLWADANLRGQNIELKLGTGIPELYLNA 455

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +E  +++LNL      ++   G +TI  +   N     +   G      E   ++ +   
Sbjct: 456 KEMKQLILNLCRNGMEAMDDKGTLTIETRLEGNLAQLYVADTGIGIPENEL-ERLFEPFF 514

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +     + +   +   +  +       V      
Sbjct: 515 TTKSKGTGLGLALCMSIVQRHHGTIDVKSHLGEGTVFIISFP 556


>gi|225572887|ref|ZP_03781642.1| hypothetical protein RUMHYD_01078 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039752|gb|EEG49998.1| hypothetical protein RUMHYD_01078 [Blautia hydrogenotrophica DSM
           10507]
          Length = 226

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 13/221 (5%)

Query: 6   CFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
              L  +     LL S+I H+I +P+  I ++L+L+     E            S     
Sbjct: 4   NEQLEQLKSETQLLISKISHEIRNPVALIQSTLDLMAIRHPEITQFDEWDDIMDSMDYLK 63

Query: 65  KFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
             +     +  +    +    +          +      +   +       +  L  +  
Sbjct: 64  GLLNDVSEFNNATRLHLQPTHMKEFLTATFRSLQPTLDYLFIHLVTELNLPETPLLIDPT 123

Query: 115 -RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              + LLNL   A+ + P  G +        +  I  ++ NG      +  T +    V 
Sbjct: 124 KFRQALLNLLRNAYEASPMHGIIHFYAFSKDSLLILQIEDNGCGIPPEDLST-LFQPFVT 182

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E         +  L 
Sbjct: 183 HKKGGTGLGLTITKQIIEAHNGTITVESSPGKGTKFTITLP 223


>gi|298504718|gb|ADI83441.1| sensor histidine kinase, HAMP domain-containing, 1-2 heme-binding
           sites [Geobacter sulfurreducens KN400]
          Length = 536

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 54/226 (23%), Gaps = 16/226 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
               + S  L +L  L + I H+I +P+  I     L+             + LI   + 
Sbjct: 291 QAQLVHSEKLASLGELVAGIAHEINNPLTGILVFASLMASDKKLDPSLKADLDLIVKETQ 350

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                +K +      +        +  I       V+      D  V   +  +  ++  
Sbjct: 351 RCAKIVKGLLDFSRESIPQKKPSSINAIMDATLTLVVHQSCFHDITVVKEYNPDIPEMLL 410

Query: 114 ERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  +I      +   +           +        +E   ++   G             
Sbjct: 411 DPHQIEQVFINLLLNACHAIAGSGEVHIRTGFDHVNDEVSVAITDTGCGIPDEIIGKIFD 470

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   +  R+  +         +  L 
Sbjct: 471 PFFTTKETKGTGLGLSVSYGIIEGHGGRIDVQSTVGAGTTFTVRLP 516


>gi|117624413|ref|YP_853326.1| sensory histidine kinase AtoS [Escherichia coli APEC O1]
 gi|215487438|ref|YP_002329869.1| sensory histidine kinase AtoS [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218559137|ref|YP_002392050.1| sensory histidine kinase AtoS [Escherichia coli S88]
 gi|306814667|ref|ZP_07448829.1| sensory histidine kinase AtoS [Escherichia coli NC101]
 gi|331658299|ref|ZP_08359261.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA206]
 gi|115513537|gb|ABJ01612.1| sensor protein AtoS [Escherichia coli APEC O1]
 gi|215265510|emb|CAS09912.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli O127:H6 str. E2348/69]
 gi|218365906|emb|CAR03648.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli S88]
 gi|222033981|emb|CAP76722.1| Signal transduction histidine-protein kinase atoS [Escherichia coli
           LF82]
 gi|281179311|dbj|BAI55641.1| two-component sensor kinase [Escherichia coli SE15]
 gi|294493595|gb|ADE92351.1| sensory box histidine kinase AtoS [Escherichia coli IHE3034]
 gi|305852061|gb|EFM52513.1| sensory histidine kinase AtoS [Escherichia coli NC101]
 gi|307626242|gb|ADN70546.1| sensory histidine kinase AtoS [Escherichia coli UM146]
 gi|312946841|gb|ADR27668.1| sensory histidine kinase AtoS [Escherichia coli O83:H1 str. NRG
           857C]
 gi|320196091|gb|EFW70715.1| Sensory histidine kinase AtoS [Escherichia coli WV_060327]
 gi|323188053|gb|EFZ73348.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           RN587/1]
 gi|323952013|gb|EGB47887.1| hsp90-like protein [Escherichia coli H252]
 gi|323955987|gb|EGB51740.1| hsp90-like protein [Escherichia coli H263]
 gi|330912050|gb|EGH40560.1| sensory histidine kinase AtoS [Escherichia coli AA86]
 gi|331056547|gb|EGI28556.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA206]
          Length = 608

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|39995706|ref|NP_951657.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982470|gb|AAR33930.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 516

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 54/226 (23%), Gaps = 16/226 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
               + S  L +L  L + I H+I +P+  I     L+             + LI   + 
Sbjct: 271 QAQLVHSEKLASLGELVAGIAHEINNPLTGILVFASLMASDKKLDPSLKADLDLIVKETQ 330

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                +K +      +        +  I       V+      D  V   +  +  ++  
Sbjct: 331 RCAKIVKGLLDFSRESIPQKKPSSINAIMDATLTLVVHQSCFHDITVVKEYNPDIPEMLL 390

Query: 114 ERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  +I      +   +           +        +E   ++   G             
Sbjct: 391 DPHQIEQVFINLLLNACHAIAGSGEVHIRTGFDHVNDEVSVAITDTGCGIPDEIIGKIFD 450

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   +  R+  +         +  L 
Sbjct: 451 PFFTTKETKGTGLGLSVSYGIIEGHGGRIDVQSTVGAGTTFTVRLP 496


>gi|307554286|gb|ADN47061.1| sensor protein AtoS for response regulator AtoC [Escherichia coli
           ABU 83972]
          Length = 608

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|91211513|ref|YP_541499.1| sensory histidine kinase AtoS [Escherichia coli UTI89]
 gi|331647874|ref|ZP_08348966.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           M605]
 gi|91073087|gb|ABE07968.1| sensor protein AtoS [Escherichia coli UTI89]
 gi|331043598|gb|EGI15736.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           M605]
          Length = 612

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 436

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 496

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 555

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603


>gi|301019444|ref|ZP_07183617.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300399259|gb|EFJ82797.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
          Length = 465

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 238 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 297

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 298 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 357

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 358 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 416

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 417 AEGTGLGLAVVHNIVEQHGGTIQVASQEGEGATFTLWLP 455


>gi|218779811|ref|YP_002431129.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218761195|gb|ACL03661.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 495

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 70/231 (30%), Gaps = 20/231 (8%)

Query: 2   AKNICFNLS-----SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
                  L      +  L +L  + + + H+I +P+G I +S ELL +   +    QL+ 
Sbjct: 256 RAEERLKLEEQLSRAERLASLGEMAAGVSHEIRNPLGIIRSSAELLGKR-YDGPNRQLLE 314

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTG 106
           +    +      +     +    +       +          +          V+     
Sbjct: 315 VIIEESTRLNDIITDFLNFARPTEPRFQECSVAGVLGKNLAFLAPRLNQDGYHVEQEAPS 374

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   +  +     +  LN+ + A  ++P GG V +  +    +   S    G      E 
Sbjct: 375 DLPMVWADPNLLYQSFLNILINAMQAMPAGGTVHVKTRIQGEKLSVSFTDEGKGV-TDEA 433

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +    V  +   +   +  E  +D    +   L 
Sbjct: 434 MKKIWNPFFTTKERGTGLGLCVVRNIIEAHGGSVTIENSEDKGACVRVELP 484


>gi|74312741|ref|YP_311160.1| sensory histidine kinase AtoS [Shigella sonnei Ss046]
 gi|73856218|gb|AAZ88925.1| sensor protein AtoS for response regulator AtoC [Shigella sonnei
           Ss046]
          Length = 608

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|16130156|ref|NP_416723.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. MG1655]
 gi|89109038|ref|AP_002818.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. W3110]
 gi|157161703|ref|YP_001459021.1| sensory histidine kinase AtoS [Escherichia coli HS]
 gi|170081839|ref|YP_001731159.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. DH10B]
 gi|238901394|ref|YP_002927190.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli BW2952]
 gi|256022098|ref|ZP_05435963.1| sensory histidine kinase AtoS [Escherichia sp. 4_1_40B]
 gi|301024239|ref|ZP_07187934.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 196-1]
 gi|307138878|ref|ZP_07498234.1| sensory histidine kinase AtoS [Escherichia coli H736]
 gi|312973527|ref|ZP_07787699.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           1827-70]
 gi|732226|sp|Q06067|ATOS_ECOLI RecName: Full=Signal transduction histidine-protein kinase AtoS
 gi|290419|gb|AAA23449.1| ORF-1 [Escherichia coli]
 gi|1736874|dbj|BAA16015.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K12 substr. W3110]
 gi|1788549|gb|AAC75279.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. MG1655]
 gi|157067383|gb|ABV06638.1| sensory box histidine kinase AtoS [Escherichia coli HS]
 gi|169889674|gb|ACB03381.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli str. K-12 substr. DH10B]
 gi|238863521|gb|ACR65519.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli BW2952]
 gi|260448687|gb|ACX39109.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Escherichia coli DH1]
 gi|299880502|gb|EFI88713.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 196-1]
 gi|310332122|gb|EFP99357.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           1827-70]
 gi|315615481|gb|EFU96113.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           3431]
 gi|320199814|gb|EFW74403.1| Sensory histidine kinase AtoS [Escherichia coli EC4100B]
 gi|323936834|gb|EGB33119.1| hsp90-like protein [Escherichia coli E1520]
 gi|323941086|gb|EGB37273.1| hsp90-like protein [Escherichia coli E482]
          Length = 608

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|225181177|ref|ZP_03734623.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168146|gb|EEG76951.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 603

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 16/235 (6%), Positives = 66/235 (28%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
            +     +          + + H++ +P+  + +  E L      E       +  +   
Sbjct: 360 KERELIRIQQE-----FVANVSHELRTPLTTMKSYTETLLGGAMYEPETCLSFLSTMEKE 414

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   +              + +          + +  + +  +V          V++  T
Sbjct: 415 TERMVRLVKDLLALSQLDYRQVAWRKEKLPLNELVSEVVNELRVKFQEEPRHVTVELPET 474

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                  R++  ++L+N+   +       G + I+++ ++++ +  +  +G      +  
Sbjct: 475 TVWHCFDRDKMKQVLINVIQNSFKYTAEHGLIRIALEVAEDQAVIHVADDGIGIPPEDVK 534

Query: 164 --FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +       +   +   +      +     +  L 
Sbjct: 535 RVFDRFYRVDKARSRDFGGTGLGLSIAREIVEAHGGSITVCSEPEKGTQFTISLP 589


>gi|26248608|ref|NP_754648.1| sensory histidine kinase AtoS [Escherichia coli CFT073]
 gi|26109013|gb|AAN81216.1|AE016763_175 Sensor protein atoS [Escherichia coli CFT073]
          Length = 612

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 436

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 496

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 555

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603


>gi|323977583|gb|EGB72669.1| hsp90-like protein [Escherichia coli TW10509]
          Length = 605

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 370 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 429

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 430 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 489

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 490 ISADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 548

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 549 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 596


>gi|331663725|ref|ZP_08364635.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA143]
 gi|284922211|emb|CBG35293.1| two-component system sensor kinase [Escherichia coli 042]
 gi|331059524|gb|EGI31501.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA143]
          Length = 608

 Score =  131 bits (330), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    +++ 
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|331642849|ref|ZP_08343984.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           H736]
 gi|331039647|gb|EGI11867.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           H736]
          Length = 612

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 436

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 496

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 555

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603


>gi|218705750|ref|YP_002413269.1| sensory histidine kinase AtoS [Escherichia coli UMN026]
 gi|218432847|emb|CAR13741.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli UMN026]
          Length = 608

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    +++ 
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|52080050|ref|YP_078841.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52785425|ref|YP_091254.1| KinC [Bacillus licheniformis ATCC 14580]
 gi|52003261|gb|AAU23203.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347927|gb|AAU40561.1| KinC [Bacillus licheniformis ATCC 14580]
          Length = 445

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
             N    + S  L     L + I H++ +P+ +++  L+L+  E     +   +I     
Sbjct: 199 KSNQRLAMQSQKLAMAGQLAAGIAHEVRNPLTSVNGFLQLMKAEYPDRKDYFDIIFSEIK 258

Query: 59  SAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEKI 109
                    L   +        +     L  +  ++E       I ++K  Q     E  
Sbjct: 259 RIDSVLGELLVLAKPHQVQFKKIKINSVLQQVATLLETNAVLSHIKIEKAFQHGEEWEIN 318

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +NL      ++P GGK+TIS +   +    S+K  G      +   ++ +
Sbjct: 319 GDENQIKQVFINLIKNGIEAMPDGGKITISSKAEGDCVKISIKDEGGGISQADL-AKLGE 377

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +     + +   +   +  +           LL 
Sbjct: 378 PFFSTKEEGTGLGLTICLNIIGAHNGEMKIDSKLGEGSTFHILLP 422


>gi|331673738|ref|ZP_08374501.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA280]
 gi|331069011|gb|EGI40403.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           TA280]
          Length = 612

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 436

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    +++ 
Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 496

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 555

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603


>gi|332083894|gb|EGI89107.1| sensor protein zraS [Shigella boydii 5216-82]
          Length = 328

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 101 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 160

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +                 
Sbjct: 161 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 220

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 221 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 279

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 280 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 318


>gi|293405686|ref|ZP_06649678.1| sensory histidine kinase AtoS [Escherichia coli FVEC1412]
 gi|298381368|ref|ZP_06990967.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           FVEC1302]
 gi|291427894|gb|EFF00921.1| sensory histidine kinase AtoS [Escherichia coli FVEC1412]
 gi|298278810|gb|EFI20324.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           FVEC1302]
          Length = 612

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 436

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    +++ 
Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 496

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 555

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603


>gi|95928936|ref|ZP_01311681.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134837|gb|EAT16491.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 649

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 69/230 (30%), Gaps = 18/230 (7%)

Query: 2   AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
            +N            + +L  L S + H+I +P+G I      ++    E       +  
Sbjct: 413 TQNQEMQASLAQHGKMASLGVLSSGVAHEINNPLGVILGYAGYIENKIGEKDPNYHYIHE 472

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
           I+  S      ++ +        SV     +  +   I DF A    +      +     
Sbjct: 473 IKRESKRCRKIVQDLLSYARTPQSVLEKTDINALLDQIVDFAANHTDMHHVTIVKNLSPG 532

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                    +  ++ +NL + A  ++   G++ +  +    + +   + +G      E  
Sbjct: 533 LPELNIDGDQMRQVAINLILNAGGAIKDHGRLEVETRRDNEDILIIFRDSGVGI-EQEIL 591

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +      +       +  ++   +           ++  L 
Sbjct: 592 ERIFEPFFTTKEKGTGLGLAISKQIIEQHHGSIHMTSTPGVGTTVTVRLP 641


>gi|320178807|gb|EFW53770.1| Sensory histidine kinase AtoS [Shigella boydii ATCC 9905]
          Length = 608

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|331653654|ref|ZP_08354655.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           M718]
 gi|331048503|gb|EGI20579.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           M718]
          Length = 612

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 436

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    +++ 
Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELNP 496

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 555

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 603


>gi|294500801|ref|YP_003564501.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294350738|gb|ADE71067.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 538

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M K +      M+ +  L + + H+I +P+  +   L+L  +       E   + L+   
Sbjct: 312 MQKELQ-RAEKMNAIGQLAASVAHEIRNPMTVVKGFLQLFQDNTKLSNTELSYIHLMINE 370

Query: 57  SMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
              A   +                          +  +         +   +        
Sbjct: 371 MDRAEAIIHDYLSLAKPDVHQHRFINCLECVTSLVDLLSSYALLTNNILIELDAKEEMYV 430

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                E  ++LLN+      ++  GG + + +   +      ++  G      E+  ++ 
Sbjct: 431 RGSRNELNQVLLNIMKNGIEAMRNGGTLRVGLYKREGHVHIQIEDTGIGM-TSEQVNRLG 489

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       I       L  +   R+  E I       + +  
Sbjct: 490 TAFYSLKEKGTGIGLMVSYQLVEQMNGRIEVESIPGKGSTFTLIFP 535


>gi|309702530|emb|CBJ01857.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
          Length = 608

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 74/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S  +   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDLQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|256831084|ref|YP_003159812.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256580260|gb|ACU91396.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 408

 Score =  131 bits (330), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 64/246 (26%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-------------- 43
           M K        +  +    LL + + H+I +P+ AI    E L                 
Sbjct: 152 MEKEYQAKYYQAEKMATIGLLAAGVAHEINNPLAAISGFSEALKRRLPYLGTLLDKDTEQ 211

Query: 44  -------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
                       +++            L F         ++D    +    +++   I +
Sbjct: 212 GILEDFTDYTTTILEECNRCRDIVGNLLSFSSQKTCKFNTIDLNSLVAGSLKILHHQIKL 271

Query: 97  DKRVQVSWTGEKIDLSRER-----AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFS 150
              + +        ++         ++LLNL + A  ++         +  D  +     
Sbjct: 272 HPGITLHQDLCPEPVTIRGAQGELKQVLLNLVLNAMDAIESKGSITIRTSMDRPDRAALI 331

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           ++  G     PE   ++      +    H   I       +   +   +           
Sbjct: 332 VEDTGQGI-PPETLDKLFIPFFTTKTKGHSIGIGLSICYNIIKMHGGEIHVCSEPGKGSA 390

Query: 209 LSALLE 214
              +L 
Sbjct: 391 FRVMLP 396


>gi|154687042|ref|YP_001422203.1| PhoR [Bacillus amyloliquefaciens FZB42]
 gi|154352893|gb|ABS74972.1| PhoR [Bacillus amyloliquefaciens FZB42]
          Length = 579

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             + + H++ +PI +I    E L +  ++DE         +++            L   +
Sbjct: 356 FVANVSHELKTPITSIKGFTETLLDGAMKDEKALSDFLSIILKESERLQSLVQDLLDLSK 415

Query: 69  LAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120
           +                I       +           Q+    E I ++ +     ++ L
Sbjct: 416 MEQQNFTMRVESFDAAKILHEIEALLRHKAEEKGISFQLDLPEEPIFVTGDAHRLKQVFL 475

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P  G V ISV   +      +   G   +  E   +I +           
Sbjct: 476 NLANNALTYTPEKGTVGISVHVKETVVDIKVSDTGIGIQKEEIP-RIFERFYRVDKDRSR 534

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  L   ++ ++          V +  L++
Sbjct: 535 NSGGTGLGLAIVKHLIEAHEGKIEVTSEPGQGTVFTVTLKR 575


>gi|297616302|ref|YP_003701461.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144139|gb|ADI00896.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 589

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 61/219 (27%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
           L + + H++ +P+ +I   +E      + +   +   +++I   ++     ++ +     
Sbjct: 365 LVANVSHELRTPLTSIRGFIEAILDGTISDPEAQRHYLKVIHQETVRLTRLIRELLDLAQ 424

Query: 70  -----AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE---KIDLSRERAKILL 120
                       ++    +  +   +          V+V  +      +       ++L 
Sbjct: 425 MEAGKIVWELHPIEVSELVSRVLFKLGPQLEQHQISVKVDISQSLPLMLANEDRMEQVLT 484

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175
           NL   A    P G  VT+            +   G      +    + +      +   +
Sbjct: 485 NLVENAIRYSPPGKTVTVKAGSDNGLVQIEVSDEGPGIPEEDLPYIWDRFHRVEKSRSRS 544

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    V  +   +  ++               + 
Sbjct: 545 LGGTGLGLAIVKQIVEAHGGKVGVHSQPGQGSTFFFSIP 583


>gi|163846956|ref|YP_001635000.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|163668245|gb|ABY34611.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
          Length = 797

 Score =  131 bits (330), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 68/235 (28%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
            +     + S  L AL  L + + H++ +P+ +I    +LL             ++ IR 
Sbjct: 418 RRLEQQLIQSDKLSALGQLVAGVAHELNNPLASISGYAQLLMRNRTLPEDVRADVEQIRQ 477

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKID 110
            +  A   ++ + +          L+ + ++ Q             +  VQ+    E   
Sbjct: 478 QADRASRIVRNLLMFAREHKPERLLVQINEVVQSTLSLQAYQLRVDNITVQLELDPELPQ 537

Query: 111 LSRERAKILLNLFM---VAHASLPRG------GKVTISVQDSKNENIFSLKINGNLARFP 161
              +  ++   L      A  ++          +         +    ++   G      
Sbjct: 538 TLADPHQLQQVLLNLITNARQAMSEKGSGVLTIRTRNCETGDGSFIEITVSDTGIGIPAQ 597

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I +    +        +       +  E+K ++  E  +     +   L 
Sbjct: 598 YL-DKIFNPFFTTKPVGQGTGLGLSICYGIIQEHKGQIWVESHEGIGTTVFIRLP 651


>gi|293410583|ref|ZP_06654159.1| sensory histidine kinase AtoS [Escherichia coli B354]
 gi|291471051|gb|EFF13535.1| sensory histidine kinase AtoS [Escherichia coli B354]
          Length = 608

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARIDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|225181550|ref|ZP_03734992.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Dethiobacter alkaliphilus AHT 1]
 gi|225167798|gb|EEG76607.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Dethiobacter alkaliphilus AHT 1]
          Length = 544

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSM 58
           +     +    LVA L +   H+I +P+  +   L++L +         E  +L+     
Sbjct: 318 EAEMLQMEKFSLVAELAAGTAHEIRNPMTTMRGFLQILAKEFKSGTKGYEYCELMIEEID 377

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------- 110
            A   +K   L             L  I + I   I     ++     ++          
Sbjct: 378 RANAIIKEFLLLTKPAAPNLRECDLHVILEEIFMLIESKSLLEDVKLNKRYAKSLPLVEA 437

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++ LNL   A  ++P GG++TI+   S    +      G      +   ++ D 
Sbjct: 438 DPAQIKQVFLNLATNAIQAMPAGGELTIATSVSNGTVVVRFTDTGCGIEEAQL-ARLFDP 496

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   ++ RL  +            L 
Sbjct: 497 FFTTKEQGTGLGLTISYRIIEGHRGRLHADSTPGKGTTFYVELP 540


>gi|324006599|gb|EGB75818.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           MS 57-2]
          Length = 593

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 358 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILHQQTRDPIHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 418 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 477

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 478 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 584


>gi|260892913|ref|YP_003239010.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865054|gb|ACX52160.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 473

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDL--VAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A  +   ++ +     A     + + H++ +P+  I    E + +           +  
Sbjct: 233 LAAELEKRIAELKRMDAARRDFVAAVSHELRTPLSIIQGYTEAILDGMVTPEEMKLYLDT 292

Query: 53  IRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           IR            +           ++        +    +    Q   +   +   V+
Sbjct: 293 IREEVERLKRLTDELLDLRRLETGAIKIRQEKLDLGEIASQVAARFQAAPEASKLHFHVE 352

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           VS     +       ++++NL   A    P GG VT+ V+ +  E + +++  G      
Sbjct: 353 VSPRSLVLGDKDRLEQVIINLLDNAFRFTPAGGSVTLRVESAPEEVVLTVQDTGPGIPPE 412

Query: 162 E---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    + +    +           +    V  +   +  R+  +            L 
Sbjct: 413 ELPYIWEKFYRSDKARARTTGGSGLGLAIVKQIVELHGGRVEVQSRPGEGSTFKVTLP 470


>gi|323967661|gb|EGB63073.1| hsp90-like protein [Escherichia coli M863]
 gi|327252488|gb|EGE64147.1| signal transduction histidine-protein kinase atoS [Escherichia coli
           STEC_7v]
          Length = 608

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 493 ISADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|319646172|ref|ZP_08000402.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|317391922|gb|EFV72719.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 445

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
             N    + S  L     L + I H++ +P+ +++  L+L+  E     +   +I     
Sbjct: 199 KSNQRLAMQSQKLAMAGQLAAGIAHEVRNPLTSVNGFLQLMKAEYPDRKDYFDIIFSEIK 258

Query: 59  SAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQVSWTGEKI 109
                    L   +        +     L  +  ++E       I ++K  Q     E  
Sbjct: 259 RIDSVLGELLVLAKPHQVQFKKIKINSVLQQVATLLETNAVLSHIKIEKAFQHGEEWEIN 318

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +NL      ++P GGK+TIS +   +    S+K  G      +   ++ +
Sbjct: 319 GDENQIKQVFINLIKNGIEAMPDGGKITISSKAEGDYVKISIKDEGGGISQADL-AKLGE 377

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +     + +   +   +  +           LL 
Sbjct: 378 PFFSTKEEGTGLGLTICLNIIGAHNGEMKIDSKLGEGSTFHILLP 422


>gi|148265761|ref|YP_001232467.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146399261|gb|ABQ27894.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 367

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 18/229 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        + ++  L + + H+I +P+G+I  + E+L +         E ++++   + 
Sbjct: 139 EEQLRRAERLSVLGELSAVLAHEIRNPLGSIKGTAEILKDSFRPGESNYEFLEILLKETD 198

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSWTGEKIDL 111
                ++             +   +      I            V   +  +        
Sbjct: 199 RLNRVVEDFLGLARPLQVERATCDIMAELNEIVTLISTEAAARGVSIELNPAELPAVHGD 258

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN------ENIFSLKINGNLARFPEKFT 165
             +  +  LNL M    +  RGGK+T+S                S    G     P++  
Sbjct: 259 REKLRQAFLNLLMNGLQATGRGGKLTVSASCPGPAEESPAVVELSFADTGEGI-EPDRLN 317

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +  D   +       +   +   +            +  L 
Sbjct: 318 RIFEPFFTTKPDGTGLGLAITQKIVESHGGSIQVASEKGKGTTFTVRLP 366


>gi|116749986|ref|YP_846673.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699050|gb|ABK18238.1| GAF sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 540

 Score =  131 bits (329), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           A+ +   L     L AL  L + I H+I +P+  I+ + ++L            + D+V+
Sbjct: 286 ARKLEQRLQQTERLKALGTLAAGIAHEIRNPLATINFNTQMLQRELHLDAAQQQMFDDVL 345

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKI 109
           + IR         L F R              +     + +   +  +  V +  +    
Sbjct: 346 KEIRKMDRIVQQVLHFARPREPQFQPNQLNEVVRYCMDMAKAYLVKANVVVCLDTSDGLP 405

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-----FSLKINGNLARFPEKF 164
            +  + ++I   +  V   ++            ++ +         +   G      E  
Sbjct: 406 SVVMDFSQICQVVMNVIINAIESMPNGGNLTVATERQADPPSLVLQVTDTGTGI-LEEDK 464

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D       +   +       +  ++   +  E           +  
Sbjct: 465 DRIFDPFFTRKPEGTGMGLSISRQILEKHGAFVDVETEPGKGTTFRIIFP 514


>gi|170680522|ref|YP_001744413.1| sensory histidine kinase AtoS [Escherichia coli SMS-3-5]
 gi|218700688|ref|YP_002408317.1| sensory histidine kinase AtoS [Escherichia coli IAI39]
 gi|170518240|gb|ACB16418.1| sensory box histidine kinase AtoS [Escherichia coli SMS-3-5]
 gi|218370674|emb|CAR18483.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli IAI39]
          Length = 608

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|89519319|gb|ABD75796.1| putative A-signal production regulator [uncultured bacterium]
          Length = 389

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     + S  L ++  L SRI H++ +PI  I   +ELL +  +E    +  + S  
Sbjct: 150 LQEAQHKLIQSEKLASIGRLASRIAHELRNPIQGIRMGIELLRQELMEPNHPEGFQESCR 209

Query: 59  ---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--- 100
                               L++ R         D    +  I   + + +   +     
Sbjct: 210 TNLQHIDQEITVANTIVKDLLEYARDMKFDFTEADVNEIIDGILFNLSEKVTDAQITVTP 269

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLAR 159
             S  G          + ++N+      ++  GG +TI+     ++    +++  G    
Sbjct: 270 HYSDIGTITADGIRIRQAIMNIIQNGIEAMSPGGTMTITTASHGDDAIRITIQDTGCGM- 328

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  ++ +    +      +    V  +   +   +  +            L 
Sbjct: 329 TDEQQQRLFEPFFTTKEKGVGLGMSIVHRIIETHGGTIDIDSTPGSGTTFMITLP 383


>gi|253701161|ref|YP_003022350.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
 gi|251776011|gb|ACT18592.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M21]
          Length = 396

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     + S  L +L  L + + H+I +P+ +I   ++L+     E E +  +     
Sbjct: 166 LRRAQAEVVQSEKLASLGYLSAGMAHEIRNPLNSIALFVQLIKSGLDEHERLDYVEKILK 225

Query: 59  SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   +                          L      +            S    
Sbjct: 226 EVDRIDNILAKLLDASKRPKFEISEVRVDRVLEHTLDAFTPQLRQKRIRAVTDFKSIPPA 285

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I  NLF+ +   +P  G + + +   +      +   G     PE    I
Sbjct: 286 IKADPMEIEQIFTNLFLNSIYVMPEEGTLAVELAGDEQWITVRVSDTGPGI-PPENLPNI 344

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V+ +    K ++  E  D         L 
Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKTYKGKIEVEKSDSSGTTFLVRLP 391


>gi|317050222|ref|YP_004111338.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945306|gb|ADU64782.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 535

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 73/228 (32%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +     + +  L A+  L + + H++ +P+ AI     ++ E   E   +        
Sbjct: 292 LRETQAQMVRAETLAAVGTLAAGVSHEVSTPLNAITGFCRIMLEEVDESHPLYEDLKVVE 351

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKI 109
           Q            L+F R+    T        L +   ++          +   ++ +  
Sbjct: 352 QEALRCRRIVQSLLQFARVPSHSTSLACVNELLDETMTLVSYQTATKGITIDRDFSSDLP 411

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           D+S +  ++   L      A  ++   G++ I     ++  + ++  +G      E+  +
Sbjct: 412 DVSADPMQLKQVLLNIVLNAIQAMEGRGRLHIRTFTLRDTVMIAITDSGPGI-PAEQQQK 470

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       +  E    +L E        ++  L 
Sbjct: 471 IFQPFYTTKSGGTGLGLAISYGIIKEYGGDILLESAPGKGTTVTITLP 518


>gi|295705390|ref|YP_003598465.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294803049|gb|ADF40115.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 460

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 59/234 (25%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK++       ++     S + H+I SP+ +I    + L    + DE            
Sbjct: 229 MAKSLEQL---EEMRQEFVSNVSHEIQSPLASIQGFSKTLRSANLSDEQRNEYLSIIEEE 285

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             R+  +        S+D      +                  W+  + +L+ E      
Sbjct: 286 SRRMSSLSKQLLTLASLDKESEHIEKSTFDVAAQIKQVLFMTEWSWREKELAIEMDLPST 345

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   +      GG +++ +           +  G           
Sbjct: 346 MISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRIGMEDTHCHVEFQDTGIGISKESLPHI 405

Query: 167 IVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        T  S  +    V  +   +   +  E            L K
Sbjct: 406 FNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKGKGSTFHVYLPK 459


>gi|331683896|ref|ZP_08384492.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           H299]
 gi|331078848|gb|EGI50050.1| signal transduction histidine-protein kinase AtoS [Escherichia coli
           H299]
          Length = 608

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTGDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARIDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|189424888|ref|YP_001952065.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189421147|gb|ACD95545.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 839

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 14/223 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
               +    L +L  L + I H+I +P+  I   L+ L +       + E++        
Sbjct: 607 REETVRLERLASLGKLAAGISHEIRNPLTGISLLLDDLHDRAQLGDKDREMLTKAMAEIE 666

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEKIDL 111
                +  +        S  +    G+  + +   +    + Q        S     +  
Sbjct: 667 RMERLISALLTFAAPPRSRFAPGDPGEAAEDVVMLMQRSCQRQGIVLSLERSPLPTCLID 726

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           + +  + LLNL   A  +LP GG +T ++    ++ + ++  +G+     +    I +  
Sbjct: 727 AEKIRQALLNLLKNALEALPLGGMITTTISRDDHDALITVSDSGHGIPPQDLPL-IFEPF 785

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  E+   +  +    H+      L 
Sbjct: 786 FTRKGAGTGLGLSITRQIVEEHGGSISVDSEPGHSTTFRIRLP 828


>gi|206889206|ref|YP_002249288.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741144|gb|ACI20201.1| sensor histidine kinase, putative [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 884

 Score =  131 bits (329), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       +S   + AL  + +++ H+I +P+ AI    + LD+   E++  + I++   
Sbjct: 637 LRNLKEKIISMEKMAALGEMAAKVAHEIRNPLLAIGGFAKRLDKDLKEEKSKEYIKVIIE 696

Query: 59  SAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 + +     +                +  + +  +        + +V V      
Sbjct: 697 EVKRLERILNEILSFVKPYPIGKESFKIKGLVDNVINFVESTLKENNNEFKVIVKEDFSV 756

Query: 109 IDLSRERAKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLKINGNLA 158
                +  ++LLNL   A+ +                        K   +  ++  G   
Sbjct: 757 PGNYDKLKEVLLNLISNANEATKDGLITLKIEKADKLPVEIPDIQKEYLLIEVEDTGCGI 816

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  E   +I D    + I    +       +  E+   +  E   +   +    L 
Sbjct: 817 Q-KENLKRIFDPFFTTKISGTGLGLAISKRIVEEHGGIIKVESEINKGTIFRVYLP 871


>gi|256830706|ref|YP_003159434.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579882|gb|ACU91018.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 586

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53
            +       +  L AL  L + + H+I +P+ +I      L       +      ++Q  
Sbjct: 355 RRLQEQVRRNERLTALGNLAAGVAHEIRNPLSSIKGFATYLAGKVQGQDQDAARAMIQET 414

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKI 109
              +      L+F R         D    +    +++   +                   
Sbjct: 415 DRLNRVVSELLEFARPGEMKLRDEDLAQVVERALRLVRADVTAKNVAVHFEQAGTLPRVP 474

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQI 167
                  + LLNLF+ A  ++ +GG + I+   +         +   G+     E    I
Sbjct: 475 LDPERFTQALLNLFLNAVQAMDQGGTLRITAAQEPDAGGVALRIADTGHGM-AAELVPDI 533

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +    V  +   +   +  E +     V + +L 
Sbjct: 534 FNPYFTTKSSGTGLGLAIVHRIIEAHGGEIKVESVVGQGTVFTLMLP 580


>gi|189346805|ref|YP_001943334.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chlorobium limicola DSM 245]
 gi|189340952|gb|ACD90355.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chlorobium limicola DSM 245]
          Length = 679

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 70/233 (30%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-------EVGIEDE 48
           + +             L A+  L S + H+I +P+ AI    + LD       +      
Sbjct: 446 LTEQRAMQQVIDRQAKLQAMGELASGVAHEIRNPLNAIGILAQRLDIEFSPAVDEPEYRH 505

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQ 101
           +++ +          ++           +   + L D  +     +        +   ++
Sbjct: 506 LVRTVVSEVHRLNAIIQRFLKFGRPPLLMPVPVHLADFVRSYGTVLQSEAEKKSIRFTLK 565

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +    +  ++LLN+      +  +GG +TI V    + ++  +  +G      
Sbjct: 566 ADCDRTVLIDREQMQQVLLNIIRNGVEATAKGGSITIRVFCRGSRSVIEIADSGTGIPAA 625

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +  D   +       + H +   +     +    V S +L 
Sbjct: 626 KLPEIFNLYF-TTKNDGSGMGLSIANQIVHAHGGLIEVSSREGEGSVFSIVLP 677


>gi|108760411|ref|YP_628670.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108464291|gb|ABF89476.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 875

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +A+     +    L AL  L + + H++ +P+GAI NS+  +            ++ ++ 
Sbjct: 636 LARTQAQLVRRERLAALGELSAVVAHEVRNPLGAIFNSVASIRRIVGPDSAAVPLLDIVG 695

Query: 55  LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             S          L F R    +  +V     + D  +          RV++    +   
Sbjct: 696 EESDRLNRIVADLLTFARPPAPHPYAVPLSPLVEDAVRGALAEAPGQVRVELDLADDVPS 755

Query: 111 LSRE---RAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           ++ +     +  LNL + A  ++P+    + ++       E       +G     P+   
Sbjct: 756 VTVDERMMRQAFLNLAINAVQAMPQGGMLRASVRRATGTPEVEVQFVDSGPGI-SPDVRA 814

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +      +    V  +   ++ R+  E            L 
Sbjct: 815 RIFEPFFTTKAKGTGLGLAVVKRIIESHQGRVALESQPGQGTTFRLYLP 863


>gi|220918622|ref|YP_002493926.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956476|gb|ACL66860.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 548

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-------D 47
           +       + +  L +L  L + I H+I +P+  I    +L    L E   +        
Sbjct: 287 LRNAQEQLVRTEKLSSLGKLSASIAHEINNPLAGILTFAKLVSRTLAEGPPDDARRAVLQ 346

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------- 100
             + L+   +      ++ +             +      +     IA    +       
Sbjct: 347 RNLGLVEREAQRCSAIVRNLLDFARERPMAKKPVDPRAAVEEALSLIANQIAIQGVKLER 406

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +    + +    +  +  +N+ M A  ++  +GGK+ I+ +  +     + + +G    
Sbjct: 407 HLPPLPQVLADFGQLRQAFVNVAMNACEAMGAKGGKLRITARAPEGAVEIAFQDDGPGM- 465

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE+ + I D    +      +    V  +   +   +  +  +      +  L 
Sbjct: 466 PPERVSHIFDPFFTTKEKGTGLGLSVVYGIVQRHGGSIAVDSTEGEGTTFTFRLP 520


>gi|223938005|ref|ZP_03629904.1| integral membrane sensor hybrid histidine kinase [bacterium
           Ellin514]
 gi|223893406|gb|EEF59868.1| integral membrane sensor hybrid histidine kinase [bacterium
           Ellin514]
          Length = 754

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 71/232 (30%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + S  L  +    + + H++ +P+ ++    E+L +  + ++  + + +   
Sbjct: 377 LKATQNQLIQSEKLSGIGEFVAGVAHELNNPLTSVMGFAEILQQSELPEQHRRFLDMIFK 436

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           SA          L F R        +     L    ++++  +       ++     +  
Sbjct: 437 SAKRCQKIVAGLLSFARKHLPERKVLSVNTVLESAIEIVQYQLRTSNIEVITALDPNLPP 496

Query: 112 ----SRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKF 164
                 +  ++ LN+   A  ++       ++ I+ Q   +      + NG      +  
Sbjct: 497 TLVDQHQMQQVFLNIINNARQAMEVRQTRGRICITSQVVDDRVRVIFQDNGPGI-SADNL 555

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++      +        +       +  E+   + P+         +  L 
Sbjct: 556 KKLFVPFFTTKEVGKGTGLGLSICYGIVTEHGGTITPQSKHGEGASFTIDLP 607


>gi|172056770|ref|YP_001813230.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989291|gb|ACB60213.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 854

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +++        L + L S + H++ +P+ +I+   EL+     ++  +D+ ++ I   + 
Sbjct: 605 RDVTKETEMDRLKSELVSTVSHELRTPLSSIYGFTELMLNRKMDLSKQDKYLKTIHSETE 664

Query: 59  SAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                +                          L               +  R        
Sbjct: 665 RLSNLVNDFLDVQRMEARIQSYQKGLLNLQPLLEETTQFYAASTTNHTITFRSLTDACPL 724

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 +  +++ NL   A    P GG + + ++   +   F+++  G            
Sbjct: 725 IEADEEKMKQLMNNLLNNAVKYSPFGGNIEVVLEADHHHVQFAVRDEGIGIPKSALAKLF 784

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        I    +       +   +   +  E ++      +  L 
Sbjct: 785 DKFYRVDNSDSRKIGGTGLGLAICKEIVEGHDGEITVESVEKQGSTFTVKLP 836


>gi|46203582|ref|ZP_00051317.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 306

 Score =  131 bits (328), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           +A+     + S  L ++  + + + H+I +PI  I  +LE+  E              LI
Sbjct: 68  LAETRQQLVMSEKLASIGEITAGVAHEINNPIAVIQGNLEVAREALGPAADEVRVEFDLI 127

Query: 54  RLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                   + +  +                   D +     + + + +   V      + 
Sbjct: 128 DQQVHRVNMIVTRLLQFARPDEYAGYVETVVPADVVADCLVLVRHLLERADVTIERSDTA 187

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
           +        E  ++++NL + A  ++P GG + +  +D            +   G     
Sbjct: 188 SRTVEVSRTELQQVVINLMVNAIHAMPEGGPLRLRTRDEDRSGHAGVAVEVSDTGVGIPA 247

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +     +       L       +  E         +  L 
Sbjct: 248 DRLRKIFDPFFTTRSHGGTGLGLSISYTLIARYGGTITVESEPGRGSTFTVWLP 301


>gi|197123857|ref|YP_002135808.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196173706|gb|ACG74679.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 548

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 72/235 (30%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-------D 47
           +       + +  L +L  L + I H+I +P+  I    +L    L E   +        
Sbjct: 287 LRNAQEQLVRTEKLSSLGKLSASIAHEINNPLAGILTFAKLVSRTLAEGPPDDARRAVLQ 346

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------- 100
             + L+   +      ++ +             +      +     IA    +       
Sbjct: 347 RNLGLVEREAQRCSAIVRNLLDFARERPMAKKPVDPRAAVEEALSLIANQIAIQGVKLER 406

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +    + +    +  +  +N+ M A  ++  +GGK+ +  +  +     + + +G    
Sbjct: 407 HLPPLPQVLADFGQLRQAFVNVAMNACEAMGAKGGKLRVIARAPEGAVEIAFQDDGPGM- 465

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE+   I D    +      +    V  +   +   +  +  +      +  L 
Sbjct: 466 PPERVGHIFDPFFTTKEKGTGLGLSVVYGIVQRHGGSIAVDSTEGEGTTFTFRLP 520


>gi|308271006|emb|CBX27616.1| hypothetical protein N47_H24380 [uncultured Desulfobacterium sp.]
          Length = 575

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 78/227 (34%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + + +     S  L +L  L + I H+I +P+ +I        E   ++E   + ++   
Sbjct: 347 LRREVA---RSQRLASLGSLAAGIAHEIRNPLSSIKGLATYFIEHNEKEEDKDIAKIMIQ 403

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 + +         V                I+ +  + +  + ++ +    E+I 
Sbjct: 404 EVDRLNRVVSQLVELARPVSISKKPAPLKSVIEDSIKLLKREALEKNIKITIHIPPEEIQ 463

Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++LLNL++ A  S+ +GG++++ V       I  +   G+  +  +    +
Sbjct: 464 IALDKDRITQVLLNLYLNAIESMEKGGRLSVDVSKKDKGAIIKVSDTGSGIKKEDL-ALV 522

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V  +   +  ++  +       V +  L 
Sbjct: 523 FDPYFTTKSTGTGLGLAIVYNIIEAHGGKITVQSRPGQETVFTIFLP 569


>gi|222529475|ref|YP_002573357.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
 gi|222456322|gb|ACM60584.1| histidine kinase [Caldicellulosiruptor bescii DSM 6725]
          Length = 575

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L +  I+D+      + +I +     +  +  
Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAIKFLNIIEVEVERLVRLIND 402

Query: 67  MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     + ++ + ++ ++  +   +   ++V    E        
Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGLEMNIYRDWL 462

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I +NL   A       GKV ++V+   N  +  +K  G      E   +I +      
Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKLDNLIVIKVKDTGIGIPEKEI-ERIFERFYRVD 521

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  +      ++  E  +      +  + 
Sbjct: 522 KGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566


>gi|224370880|ref|YP_002605044.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
 gi|223693597|gb|ACN16880.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
          Length = 557

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 74/238 (31%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED------- 47
           + +     + +  + AL  + + + H+I +P+G I        +LL++    +       
Sbjct: 312 LKELNAQLIQADKMAALGKMAAGVAHEINNPLGIIAAKAGWMRDLLEDEAFRNSENFKEY 371

Query: 48  -----EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQ 101
                ++ + +  ++      L F R        VD    L      +       D R++
Sbjct: 372 DQALEKIEEHVERAAKVTHNMLGFARSMEPVMERVDVNQVLKKTLEFLDYHAGINDIRIE 431

Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             +     ++  ++    ++ LN+   A  ++ R G +T+      +  +  +   G   
Sbjct: 432 TRFDESIPEIMSDQSQLQQVFLNILNNAVDAIERQGTITVETLAKTDTLVIHITDTGRGI 491

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I D    +        +       +       +  E         + +L 
Sbjct: 492 PET-LKKKIFDPFFTTKAVNKGTGLGLSITYTIVERLGGTIQVESGQGRGTCFTVVLP 548


>gi|218690382|ref|YP_002398594.1| sensory histidine kinase AtoS [Escherichia coli ED1a]
 gi|218427946|emb|CAR08866.2| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia coli ED1a]
          Length = 608

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILHQQTRDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +  +    + +L 
Sbjct: 552 IFDPFFTTKAPGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLILP 599


>gi|149918695|ref|ZP_01907183.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820536|gb|EDM79950.1| Signal transduction histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 679

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 58/232 (25%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + +     +        + + H++ +P+ +I    +LL E  + D  ++ ++L      
Sbjct: 364 QRALDRTHDADQAKGEFLAAVSHELRTPLNSIMGFAQLLLETKLNDSQVEDVKLILAGGR 423

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SWTG 106
              + +      +      + L      +++ +A    +                     
Sbjct: 424 QLHELIADILDLSMIESGELDLRVQHCALDELVAELVDIHQAQVRDRELELVADVADDLP 483

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 R   ++L NL   A      G     +  +  +    ++   G      E    
Sbjct: 484 TIECDRRRIGQVLTNLMSNAIKFTETGSVTVRARLEQDDYVSIAVIDTGIGIAESELPGV 543

Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +               +       +   +  RL  E            L 
Sbjct: 544 FEEYRQAGERKRKAKGTGLGLAIARRIVQAHGGRLEAESTLGEGSTFRLTLP 595


>gi|94970016|ref|YP_592064.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552066|gb|ABF41990.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 585

 Score =  131 bits (328), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67
           + + H++ +P+ +I    E L     E     E +++IR ++       + +        
Sbjct: 353 ANVSHELRTPLTSIQGYAETLSEAFREDDPAREFVEIIRRNAQRMYRLTEDLLTLARVES 412

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
              R+ F      + L       Q       ++  V  +  GE         ++  NL  
Sbjct: 413 GEQRMEFHAVTPGELLAEAELNFQDHHRGAGIELSVMNTAQGEVEVDRDALRQVFSNLLD 472

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI--DSH 179
            A      GGK+ +  +D ++  +F ++  G           F +    +   ++     
Sbjct: 473 NAVKYGGTGGKILLGSRDVEDRVLFYIRDFGPGIPSEHLARLFERFYRVDKARSVQSGGT 532

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +       +   +   +  E   +H  V S +L +
Sbjct: 533 GLGLAIAKHIVRAHGGEIRAESELNHGAVFSFILPR 568


>gi|308173414|ref|YP_003920119.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606278|emb|CBI42649.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328553656|gb|AEB24148.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328911498|gb|AEB63094.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 434

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 69/228 (30%), Gaps = 17/228 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +  N    + S  L     L + I H++ +P+ ++   L+L+     E        +   
Sbjct: 199 LETNERLAMQSQKLAIAGELAAGIAHEVRNPLTSVSGFLQLMKAQYPERT--DYFDIIFS 256

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQVSWTG 106
                   +                  +  +++                ++K    + + 
Sbjct: 257 EIKRIDLVLGELLLLAKPQTVNFTAHHLNHILKQVATLLDTNAVLSNTVIEKDFTQTESC 316

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  ++ +N+   A  ++P GG + I  +  +   + S++  GN     EK   
Sbjct: 317 IVNGDENQLKQVFINIIKNAIEAMPDGGNIHIYTKRDEENAVISIQDEGNGM-SKEKLEN 375

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +     + +  E+  +L  +  +        +L 
Sbjct: 376 IGKPFFSTKDQGTGLGLPICLRILKEHNGKLNIKSKNGEGSTFQVILP 423


>gi|303243631|ref|ZP_07329972.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
 gi|302485873|gb|EFL48796.1| integral membrane sensor signal transduction histidine kinase
           [Methanothermococcus okinawensis IH1]
          Length = 650

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 66/236 (27%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           + K+         L + + + + H++ +P+ +I   +EL+ +         + + +++  
Sbjct: 414 LEKSYNELKELDKLKSDIVAIVSHELRTPLTSIKGYVELVLDGTMGAITESQKKCLEIAN 473

Query: 55  LSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +                     + +        + +  + D  + + D   ++  +   
Sbjct: 474 KNIDRLKRLIDNMLDLSKIEHGELEMHMEEINLKELVENVVDTLKPLADEKNINI-IYKI 532

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L NL   A    P  GKV I      N     +  NG      + 
Sbjct: 533 NDIIMKGDKDRITQVLTNLIENAIKFSPVNGKVEIQALKEGNSVHIKIIDNGPGIPKKDL 592

Query: 163 --KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +   +   +  E       V   ++ 
Sbjct: 593 DRIFDRFYQVDSPEKRIKGGSGLGLAVCKSIIETHGGTIWVESKLGSGSVFHIIIP 648


>gi|326940399|gb|AEA16295.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 595

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 572


>gi|228908366|ref|ZP_04072210.1| hypothetical protein bthur0013_25270 [Bacillus thuringiensis IBL
           200]
 gi|228851274|gb|EEM96084.1| hypothetical protein bthur0013_25270 [Bacillus thuringiensis IBL
           200]
          Length = 590

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|228939751|ref|ZP_04102331.1| hypothetical protein bthur0008_24050 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972633|ref|ZP_04133235.1| hypothetical protein bthur0003_24020 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979221|ref|ZP_04139562.1| hypothetical protein bthur0002_24050 [Bacillus thuringiensis Bt407]
 gi|228780497|gb|EEM28723.1| hypothetical protein bthur0002_24050 [Bacillus thuringiensis Bt407]
 gi|228787074|gb|EEM35051.1| hypothetical protein bthur0003_24020 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819910|gb|EEM65955.1| hypothetical protein bthur0008_24050 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 590

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|218897642|ref|YP_002446053.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|228965569|ref|ZP_04126651.1| hypothetical protein bthur0004_23960 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|218544112|gb|ACK96506.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|228794162|gb|EEM41683.1| hypothetical protein bthur0004_23960 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 590

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|154685856|ref|YP_001421017.1| KinC [Bacillus amyloliquefaciens FZB42]
 gi|154351707|gb|ABS73786.1| KinC [Bacillus amyloliquefaciens FZB42]
          Length = 434

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 69/228 (30%), Gaps = 17/228 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +  N    + S  L     L + I H++ +P+ ++   L+L+     E        +   
Sbjct: 199 LETNERLAMQSQKLAIAGELAAGIAHEVRNPLTSVSGFLQLMKAQYPERT--DYFDIIFS 256

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQVSWTG 106
                   +                  +  ++                 ++K  + + + 
Sbjct: 257 EIKRIDLVLGELLLLAKPQTVTFTAHHLNHILRQVATLLDTNAVLSNTVIEKDFRQTESC 316

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  ++ +N+   A  ++P GG + I  +  +   + S++  GN     EK   
Sbjct: 317 MVNGDENQLKQVFINIIKNAIEAMPDGGNIHIYTKRDEEYAVISIQDEGNGM-SKEKLEN 375

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +     + +  E+  +L  +  +        +L 
Sbjct: 376 IGKPFFSTKDQGTGLGLPICLRILKEHNGKLNIKSKNGEGSTFQVILP 423


>gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfobacca acetoxidans DSM 11109]
 gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfobacca acetoxidans DSM 11109]
          Length = 382

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
           + +          L AL  +   + H+I +P+ AI        E L     E +  ++I 
Sbjct: 148 LREEQERRAQDERLSALDQMVEGVAHEIRNPVTAIGGFARRLYERLPNGTQEKQYAEVIV 207

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTG 106
             S      ++ +  A   +        + ++                            
Sbjct: 208 NESKRLEQMVRQIVEATVISIPSLRKRDINEVIVEALAACQEKLNESQVTAKLELAEDLP 267

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I  +    +++ +L   A  ++P GG +TI      +     +   G           
Sbjct: 268 PLIMDAGNMRRVIAHLISNAVNAMPSGGTLTIISARRNHYGQIQVSDTGVGIPSK-ILPH 326

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +    V  +  ++  ++  E   +     S LL 
Sbjct: 327 IFDPFFTTKSSGPGLGLAMVHKIIKQHGGQISVETEPNKGTTFSILLP 374


>gi|228958865|ref|ZP_04120571.1| hypothetical protein bthur0005_23630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228800802|gb|EEM47713.1| hypothetical protein bthur0005_23630 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDKRVQVSW-----TGEKID 110
                L+                 +         + +  A+   +QV             
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVDLFTDGKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|229190728|ref|ZP_04317723.1| hypothetical protein bcere0002_23950 [Bacillus cereus ATCC 10876]
 gi|228592753|gb|EEK50577.1| hypothetical protein bcere0002_23950 [Bacillus cereus ATCC 10876]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|332092308|gb|EGI97383.1| sensor protein zraS [Shigella boydii 3594-74]
          Length = 455

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 347

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 348 TQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 407 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 445


>gi|295400792|ref|ZP_06810768.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977055|gb|EFG52657.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 581

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 64/223 (28%), Gaps = 11/223 (4%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            ++      S  L     L + + H+I +P+ ++   ++LL E         +I      
Sbjct: 353 QQSEELLRKSEKLAVVGELAAGVAHEIRNPLTSLKGFIQLLKEGKHNQMYFDIIESELER 412

Query: 60  AIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
               +                S  S +    ++ +    +     VQ S   +   L  +
Sbjct: 413 LSEIVDGFLLLGKPNPAKKAYSHVSEMLQHVMKLLEGQALLHHVTVQYSIDEQLPPLYCD 472

Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++          A  ++P GG + I  +   +  +  +   G      E+   + +  
Sbjct: 473 ENQLKQVFINIIKNAIEAMPNGGILRIEAKQRLDSILICITDEGCGI-PKERMATLGEPF 531

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +  ++     +     +  L  
Sbjct: 532 YSTKEKGTGLGLMVSFKIVEAHGGKMNIYSEEGKGTTVCLLFP 574


>gi|312111356|ref|YP_003989672.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|311216457|gb|ADP75061.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 581

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 64/223 (28%), Gaps = 11/223 (4%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            ++      S  L     L + + H+I +P+ ++   ++LL E         +I      
Sbjct: 353 QQSEELLRKSEKLAVVGELAAGVAHEIRNPLTSLKGFIQLLKEGKHNQMYFDIIESELER 412

Query: 60  AIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
               +                S  S +    ++ +    +     VQ S   +   L  +
Sbjct: 413 LSEIVDGFLLLGKPNPAKKAYSHVSEMLQHVMKLLEGQALLHHVTVQYSIDEQLPPLYCD 472

Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++          A  ++P GG + I  +   +  +  +   G      E+   + +  
Sbjct: 473 ENQLKQVFINIIKNAIEAMPNGGILRIEAKQRLDSILICITDEGCGI-PKERMATLGEPF 531

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +  ++     +     +  L  
Sbjct: 532 YSTKEKGTGLGLMVSFKIVEAHGGKMNIYSEEGKGTTVCLLFP 574


>gi|228952958|ref|ZP_04115020.1| hypothetical protein bthur0006_23480 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228806679|gb|EEM53236.1| hypothetical protein bthur0006_23480 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|229079814|ref|ZP_04212346.1| hypothetical protein bcere0023_24660 [Bacillus cereus Rock4-2]
 gi|228703398|gb|EEL55852.1| hypothetical protein bcere0023_24660 [Bacillus cereus Rock4-2]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|218233298|ref|YP_002367368.1| hypothetical protein BCB4264_A2659 [Bacillus cereus B4264]
 gi|218161255|gb|ACK61247.1| hypothetical protein BCB4264_A2659 [Bacillus cereus B4264]
          Length = 595

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 408 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 572


>gi|157692038|ref|YP_001486500.1| sporulation sensor histidine kinase D [Bacillus pumilus SAFR-032]
 gi|157680796|gb|ABV61940.1| sporulation sensor histidine kinase D [Bacillus pumilus SAFR-032]
          Length = 501

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 69/225 (30%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +        ++L+  L +   H+I +P+  I   ++LL +    +E      +      
Sbjct: 273 QERHQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYHSEEDQLYFSVIEEEIK 332

Query: 62  IRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKI 109
              + +             +      + +  +  I     +   V+   ++         
Sbjct: 333 RINQIVSEFLVLGKPTAEKWQNNSVKEIVSEIMPIVFSEANLYNVEVDLQINTIQDVGVY 392

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++LN+   +  ++P GG + I ++  K+  I  +K  G   +  E    I  
Sbjct: 393 CTKDHIKQVVLNVAKNSLEAMPNGGHLKILIEAEKDHVIIKVKDTGEGIQ-EEMLKHIFL 451

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + S      +       +       +  E   +    +  +L 
Sbjct: 452 PFITSKEKGTGLGLVVCKRIISMYGGTIDIESEVNKGTTVMIMLP 496


>gi|194014569|ref|ZP_03053186.1| sporulation sensor histidine kinase D [Bacillus pumilus ATCC 7061]
 gi|194013595|gb|EDW23160.1| sporulation sensor histidine kinase D [Bacillus pumilus ATCC 7061]
          Length = 502

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +        ++L+  L +   H+I +P+  I   ++LL +    +E      +      
Sbjct: 274 QERHQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYHSEEDQLYFSVIEEEIK 333

Query: 62  IRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKI 109
              + +             +      + +  +  I     +   V+   ++         
Sbjct: 334 RINQIVSEFLVLGKPTAEKWQNNSVKEIVSEIMPIVFSEANLYNVEVDLQINTIQDVGVY 393

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++LN+   +  ++P GG + I ++  K   I  +K  G   +  E    I  
Sbjct: 394 CTKDHIKQVVLNVAKNSLEAMPNGGHLKILIEAEKEHVIIKVKDTGEGIQ-EEMLKHIFL 452

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + S      +       +       +  E   +    +  +L 
Sbjct: 453 PFITSKEKGTGLGLVVCKRIISMYGGTIDIESEVNKGTTVMIMLP 497


>gi|24115287|ref|NP_709797.1| sensor protein ZraS [Shigella flexneri 2a str. 301]
 gi|30064715|ref|NP_838886.1| sensor protein ZraS [Shigella flexneri 2a str. 2457T]
 gi|24054582|gb|AAN45504.1| sensor kinase for HydG, hydrogenase 3 activity [Shigella flexneri
           2a str. 301]
 gi|30042975|gb|AAP18697.1| sensor kinase for HydG, hydrogenase 3 activity [Shigella flexneri
           2a str. 2457T]
 gi|281603387|gb|ADA76371.1| Sensor histidine kinase ZraS [Shigella flexneri 2002017]
 gi|313648654|gb|EFS13094.1| sensor protein zraS [Shigella flexneri 2a str. 2457T]
 gi|332749201|gb|EGJ79623.1| sensor protein zraS [Shigella flexneri 2747-71]
 gi|332751442|gb|EGJ81844.1| sensor protein zraS [Shigella flexneri 4343-70]
 gi|332762824|gb|EGJ93083.1| his Kinase A domain protein [Shigella flexneri 2930-71]
 gi|332765557|gb|EGJ95771.1| sensor protein zraS [Shigella flexneri K-671]
 gi|332998976|gb|EGK18566.1| sensor protein zraS [Shigella flexneri K-218]
 gi|333014343|gb|EGK33696.1| sensor protein zraS [Shigella flexneri K-304]
          Length = 458

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|323698588|ref|ZP_08110500.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323458520|gb|EGB14385.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 470

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 75/230 (32%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG---------IEDEV 49
           + K     + +  L ++  L S I H + +P+  I  S ++L+E           +   +
Sbjct: 235 LKKRQTQLVQAQKLSSIGTLASGIAHQLNNPLNNISTSAQILEEETRGQDEFADKMMHNI 294

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGE 107
           +Q    +       L+F R         +    L    +++       ++  ++V     
Sbjct: 295 IQETLRARDIVKGLLEFSRHKDFSPAPCNLKEVLESAVRLVSGQLGPRINVDIRVPDDVT 354

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFTQ 166
                +   + LLNL + +  ++             + ++   ++  NG     P+   +
Sbjct: 355 LYLDRQRFQEALLNLIINSIQAIGDAEGTISITTSRETDHKVLTIADNGPGM-SPDTLQR 413

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +        +  Y V  +  E++  +  +         +  L 
Sbjct: 414 IFDPFFSTKEVGQGTGLGLYIVYGIIEEHRGTIRVDSTPGEGTSFTIKLP 463


>gi|149181222|ref|ZP_01859721.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148851121|gb|EDL65272.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 429

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 76/225 (33%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53
            +N    ++S  L  +  L + + H+I +P+ ++   ++L+      ++  +   + ++ 
Sbjct: 203 RENEEMMIASEKLSVIGQLAAAVAHEIRNPLTSLKGFVQLMQVTKKVEDSHLSIMLSEID 262

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKI 109
           R++ +S  + +   +    +     + I    +  +       +  ++ +          
Sbjct: 263 RINLISGEMLILGKQQDIVFAHEEVNDIIKQVLVLMEAQANLDNVEIKFNPDETGPIFVN 322

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++L+NL      ++   G V +    ++++    +  NG      E+   + +
Sbjct: 323 ADQNQLKQVLINLMKNGVEAIEGSGLVNVVTYKNESQAFIKINDNGVGM-DQERIDHLGE 381

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   ++  +           +   L 
Sbjct: 382 PFYSTKEKGTGLGLAVCKKIIERHQGTITYHSEKGKGTTVIISLP 426


>gi|319653067|ref|ZP_08007170.1| hypothetical protein HMPREF1013_03785 [Bacillus sp. 2_A_57_CT2]
 gi|317395239|gb|EFV75974.1| hypothetical protein HMPREF1013_03785 [Bacillus sp. 2_A_57_CT2]
          Length = 718

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 70/226 (30%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            K          L A+  L + + H+I +P+  +    E L      +E  + + +    
Sbjct: 490 KKTEEVLHQQDKLAAVGQLAAGVAHEIRNPLTTMKGYTEFLQLEETHEERQEYLSIILDE 549

Query: 60  AIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                  +                     I    +  +  +    + ++   +  + I +
Sbjct: 550 IDRVNNIVEDFMVLAKPKAAELEERDIIPIIKNVVSFLEFEARNRNVKIGFEYQQDIIQI 609

Query: 112 SRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +     ++LLN       ++P GG +T+      N+   ++K  G      EK   I 
Sbjct: 610 ECDENRLKQVLLNFIKNGIEAMPDGGNITVRAGIINNQVQIAIKDTGVGI-PQEKLKNIG 668

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +  + + +       +   +  ++  E   +     + +L 
Sbjct: 669 EPFFTTKKNGNGLGLMVSFKIIESHNGKVFIESELNKGTTFNIVLP 714


>gi|148262576|ref|YP_001229282.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146396076|gb|ABQ24709.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 491

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 18/222 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMS 59
            +  L ++  + + I H+I +P+  I +++ ++ +          I +EV++ +     +
Sbjct: 263 RADRLASVGEMAAGIAHEIKNPLTGIASAITIIKDDFSPSDPRTEIVNEVLEQVSRLDKT 322

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSWTGEKIDLSRER 115
               L F + +      +D    L                  K              ++ 
Sbjct: 323 VNDLLFFGKPSQPEPTYIDINATLKKTLMFASRHRGSKDIEKKLELQDDLPPVYVDPKQI 382

Query: 116 AKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            ++ LNLF+ A  ++ +GG +TI     Q        S+   G     P+   +I     
Sbjct: 383 QQVFLNLFLNAVQAMYQGGVLTIKSSLLQKDCTWVEVSVADTGQGI-PPQILEKIFTPFF 441

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       L  ++   L     D    + +  L 
Sbjct: 442 TTKAQGTGLGLAICHKLVTQHGGTLSVASEDGKGTIFTVALP 483


>gi|312622291|ref|YP_004023904.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202758|gb|ADQ46085.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 575

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L +  I+D+      + +I +     +  +  
Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAIKFLNIIEVEVERLVRLIND 402

Query: 67  MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     + ++ + ++ ++  +   +   ++V    E        
Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDIKVQEGLEMNIYRDWL 462

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I +NL   A       GKV ++V+   N  +  +K  G      E   +I +      
Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKLDNLIVIKVKDTGIGIPGREV-ERIFERFYRVD 521

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  +      ++  E  +      +  + 
Sbjct: 522 KGRSRKFGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566


>gi|229030329|ref|ZP_04186376.1| hypothetical protein bcere0028_24010 [Bacillus cereus AH1271]
 gi|228730984|gb|EEL81919.1| hypothetical protein bcere0028_24010 [Bacillus cereus AH1271]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEMNTEQKNIYQIYKNVVSLMNTKAIMTNIQVELYAESNDISIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGKITIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567


>gi|193067899|ref|ZP_03048865.1| sensor histidine kinase ZraS [Escherichia coli E110019]
 gi|192958874|gb|EDV89311.1| sensor histidine kinase ZraS [Escherichia coli E110019]
          Length = 458

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G +++   +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVMASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|315186284|gb|EFU20045.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Spirochaeta thermophila DSM 6578]
          Length = 388

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
            +     L  M+ L +L  L + + H+I +P+GAI   L+L++ +  +   +    +S  
Sbjct: 141 QRAQEVRLKRMESLASLTTLAASVAHEIKNPLGAISIHLQLIERLLSQKGCLSTEEVSPY 200

Query: 58  -----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-----------DFIAVDKRVQ 101
                       + +         ++       + +++E                     
Sbjct: 201 VGVIKEEIERLNRIVVDFLFAVRPINLEREELSVRELVEETLSLVGPELAQAGVRVDIRI 260

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      R   + LLNL   A  ++P GG +T+  Q        S    G      
Sbjct: 261 PEDIPSLSLDRRYIKQALLNLIKNAVQAMPEGGVLTVWAQLRDGRLALSFSDTGVGI-PE 319

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I +    +      +    V  +  E+   +  +  +      + L  
Sbjct: 320 HLKEKIFEPYFTTKETGSGLGLTLVYKIVQEHGGEIEVQSAEGKGTTFTLLFP 372


>gi|39996421|ref|NP_952372.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39983301|gb|AAR34695.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|298505431|gb|ADI84154.1| sensor histidine kinase [Geobacter sulfurreducens KN400]
          Length = 367

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
                 +  L AL  + + + H+I +P+G+I  + E+L +       + E ++++   + 
Sbjct: 139 EEQLRRAERLSALGEMSAMLAHEIRNPLGSIRGTAEILRDDFSPGDRKFEFLEILIKETD 198

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                        + +            L  L  +++       +   ++          
Sbjct: 199 RLNRVVEDFLRLARPLDGEKKRCDLAAELRELVTLQESEATARGIGLSLEAGEAPTVAGD 258

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD------SKNENIFSLKINGNLARFPEKFT 165
                +  LNL + A  +   GG+V + +               ++   G      ++  
Sbjct: 259 RERLRQAFLNLILNALQATGEGGRVAVRLAMRGASGDMPAGVEITVSDTGRGIDPAQR-E 317

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I      +      +       +   +   +  E            L 
Sbjct: 318 KIFTPFFTTKEGGTGLGLVITQRIVEAHGGTIGLESEPGRGTTFRVWLP 366


>gi|312135285|ref|YP_004002623.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
 gi|311775336|gb|ADQ04823.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor owensensis OL]
          Length = 575

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 71/225 (31%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L +  I+D+      + +I +     +  +  
Sbjct: 343 ERVRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAIKFLNIIEVEVERLVRLIND 402

Query: 67  MRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     + ++   ++ ++  +   +   ++V    E        
Sbjct: 403 LLYLSEIENAAMPILDEKVAVKEVVLESIELLKIKAEKKNIQFDIKVPEGLEMNIYRDWL 462

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I +NL   A       GKV ++++      +  +K  G      E   +I +      
Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTLEKPNGMVVIKVKDTGIGIPEKEI-ERIFERFYRVD 521

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  +      ++  +  +      +  + 
Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGSGSEFTVTIP 566


>gi|229153745|ref|ZP_04281886.1| hypothetical protein bcere0011_52440 [Bacillus cereus m1550]
 gi|228629698|gb|EEK86385.1| hypothetical protein bcere0011_52440 [Bacillus cereus m1550]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 67/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG       + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGGISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|110807853|ref|YP_691373.1| sensor protein ZraS [Shigella flexneri 5 str. 8401]
 gi|110617401|gb|ABF06068.1| sensor kinase for HydG [Shigella flexneri 5 str. 8401]
          Length = 455

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 347

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 348 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 407 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 445


>gi|296503205|ref|YP_003664905.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|296324257|gb|ADH07185.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 595

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 407

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV---SWTGEKID 110
                L+                 +  I +     +    I  + +V++           
Sbjct: 408 RIEAILQEFLSIAKTDEINTEKKNIYRIFKNVVSLMNTKAIMKNIQVELFTDDKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 572


>gi|229148082|ref|ZP_04276417.1| hypothetical protein bcere0012_51990 [Bacillus cereus BDRD-ST24]
 gi|228635387|gb|EEK91882.1| hypothetical protein bcere0012_51990 [Bacillus cereus BDRD-ST24]
          Length = 590

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV---SWTGEKID 110
                L+                 +  I +     +    I  + +V++           
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYRIFKNVVSLMNTKAIMKNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|139439878|ref|ZP_01773243.1| Hypothetical protein COLAER_02278 [Collinsella aerofaciens ATCC
           25986]
 gi|133774806|gb|EBA38626.1| Hypothetical protein COLAER_02278 [Collinsella aerofaciens ATCC
           25986]
          Length = 481

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 71/237 (29%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA ++  ++        L S + H++ +P+ A+  ++E + +     +DE ++ +   + 
Sbjct: 236 MATSLEKDMKHEK---RLTSDVAHELRTPLMAMLATVEAMQDGVYPTDDEHLETVASETR 292

Query: 59  SAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------------W 104
                  + + L+     +    +   D+   +   +   +R+ V               
Sbjct: 293 RLARLVQQMLDLSRMENSTAPLNLEPVDMVPFVRSIVNAQERLFVDRDLRLRFADETQGH 352

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       + ++NL   A    P GG V +SV   +     ++   G      +  
Sbjct: 353 DDVVEADPDMITQCVINLMSNAMRYTPEGGWVVVSVLSDRKHVSIAVSDTGIGIAKDDLS 412

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I                   +       +   +   +  E         +  L +
Sbjct: 413 -RIFGRFWRADASRAREAGGLGVGLAVTKQIVERHHGYISVESELGKGTTFTIHLPR 468


>gi|187732012|ref|YP_001882689.1| sensor protein ZraS [Shigella boydii CDC 3083-94]
 gi|187429004|gb|ACD08278.1| sensor histidine kinase ZraS [Shigella boydii CDC 3083-94]
          Length = 458

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|320172734|gb|EFW47968.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Shigella dysenteriae CDC 74-1112]
          Length = 458

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|197123814|ref|YP_002135765.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196173663|gb|ACG74636.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 581

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           +A+       +  + A   +  R+ H+I +P+  I  S+E L E           I DE 
Sbjct: 340 LAQGRARLAQAERIAAWREVARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEG 399

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVS 103
            Q I          +              S +   ++   +                   
Sbjct: 400 TQAIGEEVRRLKRIVDEFSRFARLPAPERSEVPAEELASAVLALFPAAPPGVEVERAVAP 459

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +    +  ++LLNL   A  ++P GG++ +  +   +   F +  +G      + 
Sbjct: 460 DLPAVLADRDQIMQVLLNLVRNALDAMPSGGRLRLVARRDGDAVAFEVSDSGAGIAPADL 519

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +      +       +A E+   L            +  L 
Sbjct: 520 -ERVFEPYFTTKPGGTGLGLAIARRIAEEHGGALEAASTPGAGATFTLRLP 569


>gi|82546345|ref|YP_410292.1| sensor protein ZraS [Shigella boydii Sb227]
 gi|81247756|gb|ABB68464.1| sensor kinase for HydG [Shigella boydii Sb227]
 gi|320185956|gb|EFW60704.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Shigella flexneri CDC 796-83]
          Length = 458

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|311067964|ref|YP_003972887.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310868481|gb|ADP31956.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 428

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 17/225 (7%)

Query: 4   NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           N    + S  L     L + I H++ +P+ ++   L+L+     +        +      
Sbjct: 202 NERLAMQSQKLAIAGELAAGIAHEVRNPLTSVSGFLQLMKTQYPDRT--DYFDIIFSEIK 259

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKI 109
                +                  I  +++                ++K   ++ + +  
Sbjct: 260 RIDLVLGELLLLAKPQTVTFKPHKINGILKQVTTLLDTNAVLSNIVIEKNFNLTESCKIN 319

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +N+      ++P GG + IS +   +  I S+K  G+     E   QI +
Sbjct: 320 GDENQLKQVFINIIKNGIEAMPAGGVINISSEKKGSYTIISIKDQGSGM-TKENMKQIGE 378

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +     + +  E+K  L  E           +L 
Sbjct: 379 PFFSTKEKGTGLGLPICLRILKEHKGELKIESESGKGSTFYVILP 423


>gi|329929451|ref|ZP_08283185.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328936339|gb|EGG32786.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 574

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 68/222 (30%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLI 53
           +    N+  + LV  + + I H+I +P+  +   L+L+ E   +          E +   
Sbjct: 336 RTEFINVERLSLVGQMAASITHEIRNPMAVVRGFLQLMKEKSPDTLDHYYRIVMEELDRA 395

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112
                  +   +            D +  L  +     +    +  +++ +   E    +
Sbjct: 396 NGIISDFLSLAQNRAAEKEECHLHDIIHELSPLLWADANLRGQNIELKLGTGIPELYLNA 455

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +E  +++LNL      ++   G +TI  +   +     +   G      E   ++ +   
Sbjct: 456 KEMKQLILNLCRNGMEAMDDKGTLTIETRLEGDLAQLYVADTGIGIPENEL-ERLFEPFF 514

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +     + +   +   +  +       V      
Sbjct: 515 TTKSKGTGLGLALCMSIIQRHHGTIDVKSHLGKGTVFIISFP 556


>gi|309783960|ref|ZP_07678605.1| sensor protein zraS [Shigella dysenteriae 1617]
 gi|308928331|gb|EFP73793.1| sensor protein zraS [Shigella dysenteriae 1617]
          Length = 455

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 347

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +       S+  +G      +    I      + 
Sbjct: 348 TQVLLNLYLNAIQAIGQHGVISVTASEGGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 407 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 445


>gi|295706146|ref|YP_003599221.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294803805|gb|ADF40871.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 538

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 62/226 (27%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M K +      M+ +  L + + H+I +P+  +   L+L  +       E   + L+   
Sbjct: 312 MQKELQ-RAEKMNAIGQLAASVAHEIRNPMTVVKGFLQLFQDNTKLSNTELSYIHLMINE 370

Query: 57  SMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
              A   +                          +  +         +   +        
Sbjct: 371 MDRAEAIIHDYLSLAKPDVHQHRFINCLECITSLVDLLSSYALLTNNILIELDAKEEVYV 430

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                E  ++LLN+      ++  GG + + +   + +    ++  G      E+  ++ 
Sbjct: 431 RGSRNELNQVLLNIMKNGIEAMRAGGTLRVGLYKREGQVHIQIEDTGIGM-TSEQVNRLG 489

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       I       L  +   R+  E I       + +  
Sbjct: 490 TAFYSLKEKGTGIGLMVSYQLVEQMNGRIEVESIPGKGSTFTLIFP 535


>gi|89897368|ref|YP_520855.1| hypothetical protein DSY4622 [Desulfitobacterium hafniense Y51]
 gi|89336816|dbj|BAE86411.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 484

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQ 51
           M+  +   + +++    L   L S + H++ +P+  I    E     L+     E   ++
Sbjct: 236 MSAELKAKIEAIERYDRLRQELLSDVSHELRTPLTVIQGFSEAVLDGLVKSKEQEQNYLK 295

Query: 52  LIRLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           LI   +      +  +                    +    I +   +Q+ E      + 
Sbjct: 296 LIIDETERLRRLVDDLLDLKALEEVETFDEMDYVVLNKLVQISVERFKQLAETREIELEI 355

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           +           S    ++L NL   A      G KV I ++   +    ++K +G    
Sbjct: 356 ILPEAPVTIWGNSDRLKQVLTNLVDNAIKHSESGTKVGIQLEFENDWAFIAVKDSGPGIP 415

Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    + +    +           +    V  +   +  ++L         V +  L 
Sbjct: 416 QGELENIWERFYKIDKSRSRRGTGTGLGLSIVKKIIEMHNGKVLARSRIGQGTVFTVYLP 475


>gi|229070093|ref|ZP_04203360.1| hypothetical protein bcere0025_22890 [Bacillus cereus F65185]
 gi|228713007|gb|EEL64915.1| hypothetical protein bcere0025_22890 [Bacillus cereus F65185]
          Length = 590

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIYVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|5712282|gb|AAD47419.1|AF100457_2 histidine kinase [Myxococcus xanthus]
          Length = 830

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 68/234 (29%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +A      +    L AL  L + + H++ +P+G I N++  L       G    ++ ++ 
Sbjct: 590 LAATRAEMVKRERLAALGELSAIVAHEVRNPLGVIFNAVASLRRLLVPGGDAAMLLDILG 649

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGE 107
             S      +  +         V     LG + Q       +         R+Q      
Sbjct: 650 EESDRLNRIVGDLLDYTRPRDPVLQQEDLGRVLQDSLEAARMQGGGADRSIRIQSDVEPG 709

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARF 160
              +  +R  I   L  VA  ++    +               + +    +   G     
Sbjct: 710 LPPVPMDRRLIRQALVNVAVNAIQSMPQGGLVQVRARREAHAGREQLRIDVVDQGPGI-P 768

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ +    +      +    V  +  E++  +  + I       +  L 
Sbjct: 769 AELLHRVFEPFFTTKAQGTGLGLAVVRRILEEHRGEIAVDSIPGRGTTFTFRLP 822


>gi|148264434|ref|YP_001231140.1| GAF sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397934|gb|ABQ26567.1| GAF sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 552

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----- 54
            K     ++S  L AL  + + + H++ +P+  I  + ++L     +D            
Sbjct: 311 TKMEAQLVNSAKLAALGEMAAGVAHELNNPMTVIIGTAQMLARDLQQDAQFDKAEVLEDI 370

Query: 55  -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                         L F R        +D       +  +I+  I   +   V      +
Sbjct: 371 INSGLRCKRIVQNLLTFSRQNQPPVTDIDLNAEAERMLSMIQYQINRSQIRIVEQFDVNL 430

Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQ--------DSKNENIFSLKINGNL 157
                   +  ++L N  + A  +L    +    ++        D K   + S+  NG+ 
Sbjct: 431 PRVTANGPQIQQVLTNFLINARDALADVERKEKIIEVATSLRVEDEKRWAVLSVSDNGSG 490

Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE  ++I      S        +     + +A  +   +  E           +L 
Sbjct: 491 I-APENMSKIFTPFYTSKEATKGTGLGLSVSLGIAESHNGTIEVESRPGEGSTFCLVLP 548


>gi|153003542|ref|YP_001377867.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp.
           Fw109-5]
 gi|152027115|gb|ABS24883.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. Fw109-5]
          Length = 546

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 17/229 (7%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
           + +   +  S  L  L  + + + H++ +P+ A+  SLELL         +  +M ++  
Sbjct: 307 RELEDAMQRSRRLADLGRVAAGLAHELRNPLAAMAGSLELLQSNASLPPDDRRLMDIVLR 366

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKI 109
            +      +  +               L             +   A  +  +        
Sbjct: 367 EASRLNGLVTDLLEYTRPAPLRRVPTDLSVLLDEALQVFANDPAAARVRVERDLTPVSIA 426

Query: 110 DLSRERAKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
               +  ++  NL + A  +  R G+   V ++ +         ++ +G      +   +
Sbjct: 427 CDPDQTRQVFWNLVVNAAQAAAREGRAGRVRVACRPDARGARIVVEDDGPGIPAADLP-R 485

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I      +  +   +    V  +   +   +  E            L +
Sbjct: 486 IFLPFFTTKQNGTGLGLPTVQRVVDAHHGSVAVESSPGRGTRFVVQLPR 534


>gi|157163472|ref|YP_001460790.1| sensor protein ZraS [Escherichia coli HS]
 gi|191168656|ref|ZP_03030437.1| sensor histidine kinase ZraS [Escherichia coli B7A]
 gi|193066405|ref|ZP_03047452.1| sensor histidine kinase ZraS [Escherichia coli E22]
 gi|194429973|ref|ZP_03062482.1| sensor histidine kinase ZraS [Escherichia coli B171]
 gi|209921483|ref|YP_002295567.1| sensor protein ZraS [Escherichia coli SE11]
 gi|218556558|ref|YP_002389472.1| sensor protein ZraS [Escherichia coli IAI1]
 gi|260846803|ref|YP_003224581.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O103:H2 str. 12009]
 gi|300819815|ref|ZP_07100002.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300824616|ref|ZP_07104724.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|307315023|ref|ZP_07594609.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli W]
 gi|309797708|ref|ZP_07692094.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|312974210|ref|ZP_07788380.1| sensor protein zraS [Escherichia coli 1827-70]
 gi|331670858|ref|ZP_08371693.1| sensor protein ZraS [Escherichia coli TA271]
 gi|331680127|ref|ZP_08380788.1| sensor protein ZraS [Escherichia coli H591]
 gi|157069152|gb|ABV08407.1| sensor histidine kinase ZraS [Escherichia coli HS]
 gi|190901296|gb|EDV61064.1| sensor histidine kinase ZraS [Escherichia coli B7A]
 gi|192925929|gb|EDV80576.1| sensor histidine kinase ZraS [Escherichia coli E22]
 gi|194412002|gb|EDX28315.1| sensor histidine kinase ZraS [Escherichia coli B171]
 gi|209914742|dbj|BAG79816.1| two-component sensor kinase [Escherichia coli SE11]
 gi|218363327|emb|CAR00977.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli IAI1]
 gi|257761950|dbj|BAI33447.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O103:H2 str. 12009]
 gi|300522865|gb|EFK43934.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300527636|gb|EFK48698.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|306905528|gb|EFN36061.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli W]
 gi|308118720|gb|EFO55982.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|310331377|gb|EFP98642.1| sensor protein zraS [Escherichia coli 1827-70]
 gi|315063329|gb|ADT77656.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli W]
 gi|320200156|gb|EFW74745.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Escherichia coli EC4100B]
 gi|323161304|gb|EFZ47213.1| sensor protein zraS [Escherichia coli E128010]
 gi|323174484|gb|EFZ60109.1| sensor protein zraS [Escherichia coli LT-68]
 gi|323182103|gb|EFZ67513.1| sensor protein zraS [Escherichia coli 1357]
 gi|323380607|gb|ADX52875.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli KO11]
 gi|323943608|gb|EGB39716.1| hsp90-like protein [Escherichia coli H120]
 gi|324017343|gb|EGB86562.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|324115435|gb|EGC09380.1| hsp90-like protein [Escherichia coli E1167]
 gi|331061946|gb|EGI33870.1| sensor protein ZraS [Escherichia coli TA271]
 gi|331072282|gb|EGI43616.1| sensor protein ZraS [Escherichia coli H591]
          Length = 458

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|328554527|gb|AEB25019.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912933|gb|AEB64529.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 579

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             + + H++ +PI +I    E L +  ++D+         +++            L   +
Sbjct: 356 FVANVSHELKTPITSIKGFTETLLDGAMKDDKALSDFLSIILKESERLQSLVQDLLDLSK 415

Query: 69  LAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120
           +                I       +           Q+    E I ++ +     ++ L
Sbjct: 416 MEQQNFTMRVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFL 475

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P  G V ISV   +      +   G   +  E   +I +           
Sbjct: 476 NLANNALTYTPEKGTVGISVNVKETVVDIKVSDTGIGIQKEEIP-RIFERFYRVDKDRSR 534

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  L   ++  +          V +  L++
Sbjct: 535 NSGGTGLGLAIVKHLIEAHEGHIEVTSEPGQGTVFTVTLKR 575


>gi|308174604|ref|YP_003921309.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307607468|emb|CBI43839.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 579

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 63/221 (28%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             + + H++ +PI +I    E L +  ++D+         +++            L   +
Sbjct: 356 FVANVSHELKTPITSIKGFTETLLDGAMKDDKALSDFLSIILKESERLQSLVQDLLDLSK 415

Query: 69  LAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120
           +                I       +           Q+    E I ++ +     ++ L
Sbjct: 416 MEQQNFTMRVESFDAAKILHEIEALLQHKAAEKGISFQLDLPEEPIFVTGDAHRLKQVFL 475

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P  G V ISV   +      +   G   +  E   +I +           
Sbjct: 476 NLANNALTYTPEKGTVGISVNVKETVVDIKVSDTGIGIQKEEIP-RIFERFYRVDKDRSR 534

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  L   ++  +          V +  L++
Sbjct: 535 NSGGTGLGLAIVKHLIEAHEGHIEVTSEPGQGTVFTVTLKR 575


>gi|238764141|ref|ZP_04625095.1| Signal transduction histidine-protein kinase atoS [Yersinia
           kristensenii ATCC 33638]
 gi|238697678|gb|EEP90441.1| Signal transduction histidine-protein kinase atoS [Yersinia
           kristensenii ATCC 33638]
          Length = 624

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 72/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
            K +   +  +  L  L  L + + H++ +P+ AI   +++L +   + + ++   +   
Sbjct: 389 KKEVQRRIEQAERLATLGELMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILK 448

Query: 57  -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID 110
                +      L F R   G    V+    L +   +++      +    V       D
Sbjct: 449 EVQSINRVIQQLLDFSRPRIGRYHQVNLNQILRESLILVKTKGVEARVDFHVQLDENLSD 508

Query: 111 LSRERAKILLNLFMVAHAS----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +   +   L  +   +      RG  +  +     N    ++K NG      +  ++
Sbjct: 509 IEADGELLKQVLLNILINAVQSITARGEIIISTQTLDDNYQQITVKDNGCGI-ADDIKSK 567

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +      +       +   +   +  E   +       +L 
Sbjct: 568 VFDPFYTTKPSGTGLGLSISQRIIASHDGDIRLESQPNKGTTFIIILP 615


>gi|254478763|ref|ZP_05092131.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035275|gb|EEB75981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 456

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 24/227 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L     +     ++ + +I   +      +  
Sbjct: 225 EKMRSEFVANVSHELRTPLTSIRGFIETLRSGAIENPEAREKFLDIIDFEAERLTRLIND 284

Query: 67  M------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +                      +    L  +E+  +D     KR         I     
Sbjct: 285 ILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNLTIIANRDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL          GG V +S +    + I  ++ NG      +K  ++ +     
Sbjct: 345 FHQMMINLIDNGIKYTQEGGFVKVSTRLEGEKIIIEVEDNGIGI-PKDKIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    +    V  +    K  +  E         +    +
Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRFNR 450


>gi|302339340|ref|YP_003804546.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301636525|gb|ADK81952.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 753

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  L +   + + H+I +P+  I    +LL +   + +    + L   S 
Sbjct: 369 LEQAKEVAEEASRLKSEFLANMSHEIRTPLNVILGFTDLLLDETEDAKKRDHLHLIKDSG 428

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDI----EQVIEDFIAVDKRVQVSWTGEKIDL- 111
                     +  +      +D  I + D     + +   F    KR  + +T E     
Sbjct: 429 KNLLELINDILDFSKIEANKLDLEIDVFDPKALLQNIKGMFSLEAKRKGLDFTVEHDVPL 488

Query: 112 ------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +IL+NL   A      G     +  ++     FS+   G      E   
Sbjct: 489 PELLGDQYRIRQILMNLLSNAMKFTEVGSVSLRAHYENTGIMRFSVSDTGIGI-PEESRK 547

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           QI     +             +       L H     +  E         +  L 
Sbjct: 548 QIFHPFEQLDGSAKRKFSGTGLGLSITRRLVHLMGGNITLESKAGRGSTFTIELP 602


>gi|108763472|ref|YP_629337.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108467352|gb|ABF92537.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 830

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 68/234 (29%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +A      +    L AL  L + + H++ +P+G I N++  L       G    ++ ++ 
Sbjct: 590 LAATRAEMVKRERLAALGELSAIVAHEVRNPLGVIFNAVASLRRLLVPGGDAAMLLDILG 649

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGE 107
             S      +  +         V     LG + Q       +         R+Q      
Sbjct: 650 EESDRLNRIVGDLLDYTRPRDPVLQQEDLGRVLQDSLEAARMQGGGADRSIRIQSDVEPG 709

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARF 160
              +  +R  I   L  VA  ++    +               + +    +   G     
Sbjct: 710 LPPVPMDRRLIRQALVNVAVNAIQSMPQGGLVQVRARREAHAGREQLRIDVVDQGPGI-P 768

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ +    +      +    V  +  E++  +  + I       +  L 
Sbjct: 769 AELLHRVFEPFFTTKAQGTGLGLAVVRRILEEHRGEIAVDSIPGRGTTFTFRLP 822


>gi|229044334|ref|ZP_04191999.1| hypothetical protein bcere0027_23620 [Bacillus cereus AH676]
 gi|228725001|gb|EEL76293.1| hypothetical protein bcere0027_23620 [Bacillus cereus AH676]
          Length = 590

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   ++     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDIMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHRGTISIMSEVGVGTTVTIYLPK 567


>gi|226310981|ref|YP_002770875.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093929|dbj|BAH42371.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 587

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 58/225 (25%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +PI +I    E L      +       +Q+I   S      ++ 
Sbjct: 361 EKMRSEFVANVSHELRTPITSIKGFTETLLEGAMQDEETCRNFLQIISDESERLYRMIRD 420

Query: 67  ---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGEKIDLSRE 114
              +         +                I  D+  +                +     
Sbjct: 421 ILDLSKIEQKRIPLHLGQVHLQDLISSAVAIMHDQAQRKELTITLPSPKPDIWLMTDKDC 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             +I+LNL   A A    GGK++I  +         +   G      E    F +    +
Sbjct: 481 LQQIILNLLTNAIAYTQEGGKISIKTEADSENITIQVMDTGIGIPEKELTRIFERFYRVD 540

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L       +  E  +      +  L 
Sbjct: 541 KARSRDSGGTGLGLAIVKHLVENLHGHISVESKEGRGTTFTVTLP 585


>gi|228921316|ref|ZP_04084641.1| hypothetical protein bthur0011_23200 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838330|gb|EEM83646.1| hypothetical protein bthur0011_23200 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 590

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIHLPK 567


>gi|116493524|ref|YP_805259.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus
           pentosaceus ATCC 25745]
 gi|116103674|gb|ABJ68817.1| PAS/PAC sensor signal transduction histidine kinase [Pediococcus
           pentosaceus ATCC 25745]
          Length = 615

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 68/224 (30%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++ + +E L      +  +    +++ +  +   +  +  +     
Sbjct: 381 FVSNVSHELRTPLTSMKSYIEALVEGAWKDPEVAPNFLKVTQEETDRMMRMINDLLNLSR 440

Query: 73  Y--------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
                              + ++   D+     D    +  ++  +T   I +  +    
Sbjct: 441 MDLGTARLEREYVNLNELFNHILDRFDMILKNSDKPDKNYSIKRDFTRRDIWVEVDTDKI 500

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN- 171
            ++L N+   A    P GG +T  + ++ N  I S+   G           F +    + 
Sbjct: 501 QQVLDNIMNNAIKYSPDGGIITCRLLETHNHVIMSITDQGLGIPKDSISHIFDRFYRVDK 560

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +  R+  E  +         L 
Sbjct: 561 ARSRAQGGTGLGLAISKEVIQLHGGRIWVESREGEGSTFYISLP 604


>gi|238789934|ref|ZP_04633714.1| Signal transduction histidine-protein kinase atoS [Yersinia
           frederiksenii ATCC 33641]
 gi|238722007|gb|EEQ13667.1| Signal transduction histidine-protein kinase atoS [Yersinia
           frederiksenii ATCC 33641]
          Length = 593

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 70/228 (30%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
            K +   +  +  L  L  L + + H++ +P+ AI   +++L +   + + ++   +   
Sbjct: 358 KKEVQRRIEQAERLATLGELMAGVAHEVRNPLTAISGFVQILKDSEKDPQRLEYTHIILK 417

Query: 57  -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID 110
                +      L F R   G    V+    + +   +++      +    V       D
Sbjct: 418 EVQSINRVIQQLLDFSRPRIGRYHQVNLNQIIRESLILVKTKGVEARVDFHVQLDENLSD 477

Query: 111 LSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +   +   L  +   ++         +  +     N    +++ NG      +   +
Sbjct: 478 IEADGELLKQVLLNILINAVQSIVARGEIIISTQALDDNYQQITIQDNGCGI-AEDIKAK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +      +       +   +   +  E   +       +L 
Sbjct: 537 VFDPFYTTKPSGTGLGLSISQRIIASHDGDIRLESQPNKGTTFIIILP 584


>gi|125974817|ref|YP_001038727.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|256004926|ref|ZP_05429899.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281418729|ref|ZP_06249748.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|125715042|gb|ABN53534.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|255991106|gb|EEU01215.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|281407813|gb|EFB38072.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316941937|gb|ADU75971.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 600

 Score =  130 bits (326), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 68/225 (30%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR--- 63
            ++     + + H++ +P+ +I +  E L     ++  +  + + +I   +         
Sbjct: 372 ENMRKEFVANVSHELRTPLTSIKSYAETLLDGALEDRELAGKFLSVINSEADRMTRLVKD 431

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      M+         D +    +  +   +               +I   ++R
Sbjct: 432 LLQLSRLDNNQMKWDMQKISFEDLVRNCVEKVKFESEEKNQTLECFTIGEELEIVADKDR 491

Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             +++LN+   A    P GGK+T+ +    +E    +  +G      +    F +    +
Sbjct: 492 MEQVVLNILTNAIKYTPEGGKITVYIGRMYSEVYVKVVDSGIGIPREDLGRIFERFYRTD 551

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +       +   +K  +           ++  L 
Sbjct: 552 KARSREMGGTGLGLAIAKEIVEAHKGSISVASEPGKGTEVTVKLP 596


>gi|320095893|ref|ZP_08027519.1| signal transduction histidine-protein kinase/phosphatase
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319977173|gb|EFW08890.1| signal transduction histidine-protein kinase/phosphatase
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 480

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSR-----ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI 53
           +A  +   L  ++  A++  R     + H++ +PI  +   +ELLD  +     +   L+
Sbjct: 241 LAGAVNRMLDRVE-RAVVARRELLDDVSHELRTPITVVRGHMELLDPSDHADVVDTRALV 299

Query: 54  RLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                     +  +              VD       +          +  +  +     
Sbjct: 300 IDELDRMGALVGDLLELARASDAVDPAPVDLAALTDRVLDKARALGEREWALDGAARATC 359

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165
              S    +  L L   A      G  V I            ++  G      +      
Sbjct: 360 WADSARITQAWLQLAQNAVQYSQEGTAVGIGSSCDSEWARMWVRDRGAGIAPQDIDRVRR 419

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + V G     +    +    V  +   +  RL  E         + ++ 
Sbjct: 420 RFVRGAGSERVSGSGLGLSIVESIVRAHGGRLDIESTPGEGSTFTLVVP 468


>gi|218697711|ref|YP_002405378.1| sensor protein ZraS [Escherichia coli 55989]
 gi|218354443|emb|CAV01258.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli 55989]
          Length = 458

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVGQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|83589986|ref|YP_429995.1| histidine kinase [Moorella thermoacetica ATCC 39073]
 gi|83572900|gb|ABC19452.1| histidine kinase [Moorella thermoacetica ATCC 39073]
          Length = 234

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 68/227 (29%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSA 60
            ++  +    + ++  L + + H+I +P+ +I   L+LL           +   +     
Sbjct: 7   EEDREYLTEKLAIIGELAAGMAHEIRNPLTSIRGFLQLLRSKYDPGAPEQEYFEIMLDEL 66

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLS 112
                 ++     +      + +   +Q+         ++ I  + +++     +   L 
Sbjct: 67  DRINNIIKEFLSLSKPSQPQLQIVSFDQLVTEALLLAEQEAIMNEVKLEQHLAHDLPLLC 126

Query: 113 RERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            + A+I   +  +   +L          V   +     E + ++   G      +    I
Sbjct: 127 LDPAQIKQVILNLTSNALHAAGPGGKVTVCCYLDKKAKEVVTTISDTGPGILPDQLKL-I 185

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  +   +       +   +  ++  +         S  L 
Sbjct: 186 FEPFYTTKENGTGLGLTLSNRIIKGHGGKIKVKSKVGEGSCFSIHLP 232


>gi|229110090|ref|ZP_04239666.1| hypothetical protein bcere0018_23450 [Bacillus cereus Rock1-15]
 gi|228673282|gb|EEL28550.1| hypothetical protein bcere0018_23450 [Bacillus cereus Rock1-15]
          Length = 590

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       ++    L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV---SWTGEKID 110
                L+                 +  I +     +    I  + +V++           
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYRIFKNVVSLMNTKAIMKNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHRGTISIMSEVGVGTTVTIYLPK 567


>gi|153007095|ref|YP_001381420.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030668|gb|ABS28436.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 506

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 10/223 (4%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +  +    + +  L  +  L + + H+I +P+G I    +LL +         L  +   
Sbjct: 280 LRDHQERLVETEKLAGIGRLAAGVAHEINNPLGVILGYAKLLRKKAEPAAAEDLAVIEEE 339

Query: 59  SAII------RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           +          L   R       +VD      D+  ++ E  +     V V         
Sbjct: 340 TLRAKEIVEGLLDLSRPLPAAAQAVDLRALADDVVARLREARLLDGVAVHVDGGATAPGH 399

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++L+NL   A  +   GG+V + V         +++ +G       +  ++ +  
Sbjct: 400 PDKLRQVLVNLVRNAAEAAGPGGRVAVRVGALDGTAEVAVEDSGPGIDAATRG-RLFEPF 458

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +A  +   L  +  +      +  L 
Sbjct: 459 FTTKPRGTGLGLAVSRAIARAHGGDLAADPAEHGGARFALRLP 501


>gi|260858113|ref|YP_003232004.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O26:H11 str. 11368]
 gi|260870714|ref|YP_003237116.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O111:H- str. 11128]
 gi|257756762|dbj|BAI28264.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O26:H11 str. 11368]
 gi|257767070|dbj|BAI38565.1| sensory histidine kinase ZraS in two-component regulatory system
           with ZraR [Escherichia coli O111:H- str. 11128]
 gi|323177559|gb|EFZ63144.1| sensor protein zraS [Escherichia coli 1180]
          Length = 458

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVGQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|333010737|gb|EGK30165.1| sensor protein zraS [Shigella flexneri VA-6]
          Length = 458

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|229178913|ref|ZP_04306272.1| hypothetical protein bcere0005_22680 [Bacillus cereus 172560W]
 gi|228604566|gb|EEK62028.1| hypothetical protein bcere0005_22680 [Bacillus cereus 172560W]
          Length = 579

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 392 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 451

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 452 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 510

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGIGTTVTIYLPK 556


>gi|206972449|ref|ZP_03233394.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206732609|gb|EDZ49786.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 590

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLAIAKTDEINTEKKNIYQIFKNVVSLMNTKAIMTNIQVELFTDDKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + + +  I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPNGGEISIHIKEINDDGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGIGTTVTIYLPK 567


>gi|308272179|emb|CBX28786.1| hypothetical protein N47_L13840 [uncultured Desulfobacterium sp.]
          Length = 498

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 82/231 (35%), Gaps = 19/231 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L  +    AL  +   I H+I +P+    +S + L E     E  +       
Sbjct: 261 RRKLEMELHQAQKFAALGVMAGGIAHEIRNPLAICSSSAQFLMEEDGTPEFRRECADKIH 320

Query: 59  SAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             I          LK+   +     ++ ++I L    Q++  + A   +++++ +  +  
Sbjct: 321 MGIRRTSAIIENLLKYSHPSKTTQTTLINIISLIKETQILVTYHAKILKIEINTSFPRQP 380

Query: 111 LSRER-----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  E       ++ +NLF+ A  ++P GG + I V+   +     +   G      E   
Sbjct: 381 VVVEGVATLLQQVFMNLFLNAINAMPSGGNLGIDVKIFDSRVRVQVTDTGCGISPREIG- 439

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    ++I      +       +  ++   +  E  +      +  L 
Sbjct: 440 KIFDPFYTTSIVGQGTGLGLSLCYSIVKQHSGTIDVESAEGSGSTFTVNLP 490


>gi|300907557|ref|ZP_07125195.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|301302184|ref|ZP_07208316.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300400724|gb|EFJ84262.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300842347|gb|EFK70107.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|315252728|gb|EFU32696.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
          Length = 458

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|262195610|ref|YP_003266819.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262078957|gb|ACY14926.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 919

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 73/244 (29%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN-----------------SLELLD 41
           + +     + S  + ++  L + I H+I +P+ AI N                 S E  +
Sbjct: 661 LTRAQDQLVQSEKMASIGQLVAGIAHEINNPVNAIVNTVGPLEEAAVTVMSSDDSAEREE 720

Query: 42  EVGIEDEVMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
                 +++++++  +            + R         D    + D   ++   +  +
Sbjct: 721 AAEDVRDMIRVVKRGAERTKAIVRALHNYSRTDDEQLVEFDLNRSIDDSLALLRHLLKQN 780

Query: 98  KRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKI 153
             V+  +           +  ++ +NL   A  +L       + +  +         +  
Sbjct: 781 IAVERDYESVGRIRGHAGQLNQVFMNLLTNAAQALAGREGALIRVETRSDDEHVRIRVID 840

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           NG          +I D    +    +   +    V  L   +   +  E       V + 
Sbjct: 841 NGAGI-PSALLPRIFDPFFTTKEVGEGTGLGLSIVHGLVERHGGSIEVESELGEGTVFTV 899

Query: 212 LLEK 215
           +L +
Sbjct: 900 VLPR 903


>gi|331675490|ref|ZP_08376239.1| sensor protein ZraS [Escherichia coli TA280]
 gi|331067368|gb|EGI38774.1| sensor protein ZraS [Escherichia coli TA280]
          Length = 455

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 347

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 348 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D   +    V  +  ++   +     +      +  L 
Sbjct: 407 ADGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 445


>gi|138894502|ref|YP_001124955.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196247897|ref|ZP_03146599.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. G11MC16]
 gi|134266015|gb|ABO66210.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196212681|gb|EDY07438.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. G11MC16]
          Length = 738

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56
            K +   L     +++V  L + I H+I +P+ A+   ++LL     G       +I   
Sbjct: 502 RKEMELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSVGGDYSMYFNVIMSE 561

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDL 111
                  +    +             +  I Q     +    +  + ++   +      +
Sbjct: 562 LKRIESIITEFLVLAKPQAVQYKQNDICKIMQDTIDLISAQAMMHNVQIIADFERGLPPV 621

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             E  ++          A   +P+GG +T+ +  +      S+   G      +K  ++ 
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGDITVRIARTGRHVRISITDQGCGI-PKDKIKKLG 680

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +  E++ ++  E            L 
Sbjct: 681 EPFYTTKERGTGLGLMVSYKIIEEHRGKIDVESEVGVGTTFHITLP 726


>gi|82778821|ref|YP_405170.1| sensor protein ZraS [Shigella dysenteriae Sd197]
 gi|81242969|gb|ABB63679.1| sensor kinase for HydG hydrogenase 3 activity [Shigella dysenteriae
           Sd197]
          Length = 458

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +       S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASEGGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|138895124|ref|YP_001125577.1| sporulation kinase B [Geobacillus thermodenitrificans NG80-2]
 gi|196248295|ref|ZP_03146996.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134266637|gb|ABO66832.1| Sporulation kinase B [Geobacillus thermodenitrificans NG80-2]
 gi|196212020|gb|EDY06778.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 430

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 78/224 (34%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55
           +A+     +  M++V+ L + I H+I +P+  +   ++LL    +  E  +         
Sbjct: 193 LARAELMKMEKMEIVSQLAASISHEIRNPLTVVKGFIQLLQTEPLPRETKERYIRIALEE 252

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
              +  I   ++  A       + +    ++ +V++    +     V  +          
Sbjct: 253 VERAEGIIHDYLTFAKPAPKETEPIDVAVELRKVLQMIAPMAHMHSVDLSSSLEHGIVIG 312

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + ++V++ +   + ++  NG      E+  +  + 
Sbjct: 313 NVQYFQQCFLNLLKNSIEAMPNGGTLRVTVENQETSVVITVSDNGIGM-TKEQVRRFGEP 371

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +     + +  +       E        L+  L 
Sbjct: 372 YFSTKEKGTGLGAMVAVKIIEQMGGTWKVESTVQKGTTLTITLP 415


>gi|293417505|ref|ZP_06660128.1| sensor protein ZRas [Escherichia coli B185]
 gi|291430832|gb|EFF03829.1| sensor protein ZRas [Escherichia coli B185]
          Length = 458

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|284924095|emb|CBG37194.1| two-component system sensor kinase [Escherichia coli 042]
          Length = 455

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 228 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 287

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 288 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 347

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 348 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 406

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 407 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 445


>gi|270289945|ref|ZP_06196171.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304385804|ref|ZP_07368148.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
 gi|270281482|gb|EFA27314.1| two-component system, OmpR family, sensor histidine kinase VicK
           [Pediococcus acidilactici 7_4]
 gi|304328308|gb|EFL95530.1| sensor histidine kinase VicK [Pediococcus acidilactici DSM 20284]
          Length = 615

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 68/224 (30%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++ + +E L      +  +    +++ +  +   +  +  +     
Sbjct: 381 FVSNVSHELRTPLTSMKSYIEALVDGAWKDPNVAPNFLKVTQEETDRMMRMINDLLNLSR 440

Query: 73  Y--------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
                              + ++   D+     +    +  ++  +T   I +  +    
Sbjct: 441 MDLGTARLDKEYVNLNELFNHILDRFDMILKNGEKSEKNYTIKRDFTRRDIWVEVDTDKI 500

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN- 171
            ++L N+   A    P GG +T  + ++ N  I S+   G           F +    + 
Sbjct: 501 QQVLDNIMNNAIKYSPDGGVITCRLVETHNHVIMSITDQGLGIPKEAISHVFDRFYRVDK 560

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +  R+  E  +         L 
Sbjct: 561 ARSRAQGGTGLGLAISKEVVQMHGGRIWVESREGEGSTFYISLP 604


>gi|147678592|ref|YP_001212807.1| sensory histidine kinase AtoS [Pelotomaculum thermopropionicum SI]
 gi|146274689|dbj|BAF60438.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 607

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 18/229 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLI 53
           M + +        L AL  L + + H+I +PI +I   ++   +             + +
Sbjct: 378 MREKMQ---RQERLAALGKLVAGVAHEIRNPITSISGYIQFWQKKNTPSPRSIATIYREV 434

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----I 109
              +      L F++ +      VD  + +  + Q   D    D    V+ T        
Sbjct: 435 TRLNSIVDKLLHFVKPSQINPAPVDVNLLVDKVSQFFADTHQSDSITVVTKTENNLPPAW 494

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPEKFTQ 166
               +  ++L+N+   A  +L                    I  +  NG      E  + 
Sbjct: 495 VDFAQVEQVLMNIMYNAWQALEGRSGTITLNTSYNPDTENLILEVADNGCGI-PAENMSN 553

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + D    +      +       +   +   +  E  +     +   L++
Sbjct: 554 LFDPFFTTRPKGTGLGLAIAYEIIRAHGGNIEVESEEGAGTSVRIYLQR 602


>gi|170683574|ref|YP_001746388.1| sensor protein ZraS [Escherichia coli SMS-3-5]
 gi|170521292|gb|ACB19470.1| sensor histidine kinase ZraS [Escherichia coli SMS-3-5]
          Length = 458

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGTGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|312793663|ref|YP_004026586.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180803|gb|ADQ40973.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 575

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L +  I+D+      + +I +     +  +  
Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVATKFLNIIEVEVERLVRLIND 402

Query: 67  MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     + ++   ++ ++  +   +   V+V    E        
Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKNIQLDVKVQEGLEMNIYRDWL 462

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I +NL   A       GKV ++V+ S +     +K  G      E   +I +      
Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKSDSTVTIKVKDTGIGIPEKEI-ERIFERFYRVD 521

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  +      ++  E  +      +  + 
Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566


>gi|256021676|ref|ZP_05435541.1| sensor protein ZraS [Shigella sp. D9]
 gi|332282919|ref|ZP_08395332.1| sensor protein ZraS [Shigella sp. D9]
 gi|332105271|gb|EGJ08617.1| sensor protein ZraS [Shigella sp. D9]
          Length = 458

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|51891887|ref|YP_074578.1| two-component sensor kinase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855576|dbj|BAD39734.1| two-component sensor kinase, probably involved in phosphate sensing
           [Symbiobacterium thermophilum IAM 14863]
          Length = 444

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M ++I  +     +     + + H++ +P+ +I    E L     DE       ++++  
Sbjct: 203 MLRDITRSRQLEQMRTEFVANVTHELRTPLTSIQGFAETLLEGALDEPETARHFVEIMLR 262

Query: 56  SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S      +  +         +       +V + +      +  +       ++      
Sbjct: 263 ESRHLGALIDELLDLSRVESGKFRMQRRPTVPAELIAATAARFAQKAERAGVQLVTEAPD 322

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
               ++ +  +++  L      A    P GG++T+S +   +    ++   G      + 
Sbjct: 323 GLPLINGDPDRLVQVLSNLVENAIKYTPAGGRITLSARRDGDGVRIAVADTGAGIPQADL 382

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +   +   +  E         + +L 
Sbjct: 383 GRIFERFYRVDKARSRATGGTGLGLAIAKHIVEAHGGTIGVESEVGKGSTFTVILP 438


>gi|120601067|ref|YP_965467.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
 gi|120561296|gb|ABM27040.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
          Length = 679

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59
               L A+  L + + H+I +P+ +I            E  D+      ++Q +   +  
Sbjct: 420 RREKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGTRFPEGSDDREAARVMVQEVDRLNRV 479

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRER 115
               +   R +            +    +++       K          +          
Sbjct: 480 ISDLIGLSRPSDIRPRPTRVADIVDHALRLVRPDAEARKVAVRFEAAPDVPEALVDPDRF 539

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVES 174
           A+ LLN+ +    ++  GG++ ++     +     S++  G     PE  +++ D    +
Sbjct: 540 AQALLNVCLNGMEAMGDGGELMVTAYRHGDGRVAVSVRDTGPGI-SPENLSRVFDPYFTT 598

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +   +   +       H    + +L 
Sbjct: 599 KGQGTGLGLAIVHKIIEAHGGEVGFRSEPGHGTECTFILP 638


>gi|324328480|gb|ADY23740.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 587

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|89098743|ref|ZP_01171624.1| KinA [Bacillus sp. NRRL B-14911]
 gi|89086419|gb|EAR65539.1| KinA [Bacillus sp. NRRL B-14911]
          Length = 488

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 82/222 (36%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLI 53
            K      ++  L  V  L + I H+I +P+ AI    +LL E   E         ++ I
Sbjct: 266 KKTEEKLHNAEKLSVVGQLAAGIAHEIRNPLTAIKGFTQLLTERKTEKYADVILSELERI 325

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  ++  K +      T  V+ +  +  +         +   V+ S +   +    
Sbjct: 326 EEIVNDLLVLAKPVVTEAQETNLVNIVKSVVTLLNTQALIYNIMIDVKYSLSEISVRCEI 385

Query: 114 ERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           ++  ++L+N+   +  ++P GGK++I V+   +  + S+K  G      E+  ++ +   
Sbjct: 386 DKIKQVLINVIKNSIEAMPHGGKISIEVRQDNSFAMISVKDEGIGI-PEERLPKLGEPFY 444

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +   +   +     ++   ++  L+ 
Sbjct: 445 STKEKGTGLGLMICNRIIKSHGGNIYITSKENEGTIVKLLIP 486


>gi|294500028|ref|YP_003563728.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294349965|gb|ADE70294.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 460

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 60/234 (25%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK++       ++     S + H+I SP+ +I    + L    + DE            
Sbjct: 229 MAKSLEQL---EEMRQEFVSNVSHEIQSPLASIQGFSKTLRSAHLSDEQRNEYLSIIEEE 285

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             R+  +        S+D      D                  W+  + +L+ E      
Sbjct: 286 SRRMSSLSKQLLTLASLDKESQNIDKIPFDVAAQIKQVLFMTEWSWREKELAIEMDLPST 345

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   +      GG +++ VQ          +  G           
Sbjct: 346 MISGDQKLLHQVWTNLITNSVKFTEEGGTLSLRVQMEDTHCHVEFQDTGIGMSKESLPHI 405

Query: 167 IVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        T  S  +    V  +   +   +  E            L K
Sbjct: 406 FNRFYKEDKARSRTEGSSGLGLAIVKQIVEMHGGSIHVESEKGKGSTFHVYLPK 459


>gi|332998848|gb|EGK18443.1| sensor protein zraS [Shigella flexneri K-272]
 gi|333014308|gb|EGK33662.1| sensor protein zraS [Shigella flexneri K-227]
          Length = 458

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|291288223|ref|YP_003505039.1| histidine kinase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885383|gb|ADD69083.1| histidine kinase [Denitrovibrio acetiphilus DSM 12809]
          Length = 375

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 71/225 (31%), Gaps = 15/225 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49
           M K        + L+  + + I HDI +P+G+I     LL+    ++E            
Sbjct: 154 MEKQRD---EKLKLMGEMAANIAHDIRNPLGSIELFASLLERDLQKNEPGMKLTRSIVKG 210

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           ++ I     + +I  K ++L        D +  +    Q +     +    ++       
Sbjct: 211 VRTINSIINNILIFTKEIQLVKSEHYVADIVDDVILYMQHLMREKKIKFINRIDEEHMLR 270

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++++NL   A  +    G++ +      + + F +   G      E+  ++  
Sbjct: 271 CDMELFKQVVMNLVHNAIDASSEKGEIVMDSFSEGDVSGFIVSDKGTGI-TKERRKKLFI 329

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +    V  +   ++  +  E            L 
Sbjct: 330 PFQTTKAKGTGLGLAIVYKIVKAHEGNITVESDGSSYTRFRVELP 374


>gi|229076090|ref|ZP_04209058.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
 gi|228706953|gb|EEL59158.1| hypothetical protein bcere0024_42870 [Bacillus cereus Rock4-18]
          Length = 571

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                           L  +  +         +  +V V      I       +I +NL 
Sbjct: 410 QQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRVSVIGDPGRLKQIFINLI 469

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566


>gi|229105216|ref|ZP_04235865.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
 gi|228678142|gb|EEL32370.1| hypothetical protein bcere0019_43500 [Bacillus cereus Rock3-28]
          Length = 571

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                           L  +  +         +  +V V      I       +I +NL 
Sbjct: 410 QQGFKLNMETVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRVSVIGDPGRLKQIFINLI 469

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566


>gi|312875839|ref|ZP_07735829.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311797320|gb|EFR13659.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 575

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L +  I+D+      + +I +     +  +  
Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVATKFLNIIEVEVERLVRLIND 402

Query: 67  MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     + ++   ++ ++  +   +   V+V    E        
Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLESIELLKIKAEKKDIQLDVKVQEGLEMNIYRDWL 462

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I +NL   A       GKV ++V+ S +     +K  G      E   +I +      
Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKSDSTVTIKVKDTGIGIPEKEI-ERIFERFYRVD 521

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  +      ++  E  +      +  + 
Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYGGKVWVESQEGIGSEFTVTIP 566


>gi|307718253|ref|YP_003873785.1| sensory transduction histidine kinase [Spirochaeta thermophila DSM
           6192]
 gi|306531978|gb|ADN01512.1| putative sensory transduction histidine kinase [Spirochaeta
           thermophila DSM 6192]
          Length = 388

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
            +     L  M+ L +L  L + + H+I +P+GAI   L+L++ +  +   +    +S  
Sbjct: 141 QRAQEVRLKRMESLASLTTLAASVAHEIKNPLGAISIHLQLIERLLSQKGCLSTEEVSPY 200

Query: 58  -----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-----------DFIAVDKRVQ 101
                       + +         ++       + +++E                     
Sbjct: 201 VGVIKEEIERLNRIVVDFLFAVRPINLEREELSVRELVEETLSLVGPELAQAGVRVDIRI 260

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      R   + LLNL   A  ++P GG +T+  Q        S    G      
Sbjct: 261 PEDIPSLSLDRRYIKQALLNLIKNAVQAMPEGGVLTVWAQLRDGRLALSFSDTGVGI-PE 319

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I +    +      +    V  +  E+   +  +  +      + L  
Sbjct: 320 HLKEKIFEPYFTTKDTGSGLGLTLVYKIVQEHGGEIEVQSKEGKGTTFTLLFP 372


>gi|220918579|ref|YP_002493883.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956433|gb|ACL66817.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 581

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           +A+       +  + A   +  R+ H+I +P+  I  S+E L E           I DE 
Sbjct: 340 LAQGRARLAQAERIAAWREVARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEG 399

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------RVQVS 103
            Q I          +              S +   ++   +              R    
Sbjct: 400 TQAIGEEVRRLKRIVDEFSRFARLPAPERSEVPAEELASAVLALFPAAPAGVEVERAIAP 459

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +    +  ++LLNL   A  ++P GG++ +  +   +   F +  +G      + 
Sbjct: 460 DLPAVLADRDQVMQVLLNLVRNALDAMPSGGRLRLVARSDGDAVAFEVSDSGAGIAPADL 519

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +      +       +A E+   L            +  L 
Sbjct: 520 -ERVFEPYFTTKPGGTGLGLAIARRIAEEHGGSLEAASPPGAGATFTLRLP 569


>gi|224370164|ref|YP_002604328.1| predicted two-component sensor histidine kinase [Desulfobacterium
           autotrophicum HRM2]
 gi|223692881|gb|ACN16164.1| predicted two-component sensor histidine kinase [Desulfobacterium
           autotrophicum HRM2]
          Length = 495

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 65/231 (28%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + K     L +  + +L  L + + H + +P+G I    +L+ E           +  I+
Sbjct: 253 LEKTQTQLLQAEKMSSLGKLAAGVAHQLNNPLGGITLFAQLMLEEHELSDDAKSDLSRIQ 312

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
             +      +K +      T        +  I       +    I  +  +  ++     
Sbjct: 313 RDAERCSAIVKELLEFARQTNREVRPHDINTIVSRTLFLLKNQSIFQNIDIVETYDKTLP 372

Query: 110 DLSRERAK---ILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKF 164
            +  +  +   + +N+ +    ++   G++ I       +      +   G         
Sbjct: 373 QIPADGQQLNHVFMNIILNGADAMAGKGRLEIRTGFSADQTMVKIEISDTGPGIDKNLLS 432

Query: 165 TQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T          +     +       +   +  R+  E  +        LL 
Sbjct: 433 TIFEPFFTTKEVGKGTGLGLSMAYGIIESHGGRIWAENREPTGTRFIILLP 483


>gi|46581783|ref|YP_012591.1| sensor protein ZraS [Desulfovibrio vulgaris str. Hildenborough]
 gi|46451206|gb|AAS97851.1| sensor protein ZraS [Desulfovibrio vulgaris str. Hildenborough]
 gi|311232340|gb|ADP85194.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris RCH1]
          Length = 679

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59
               L A+  L + + H+I +P+ +I            E  D+      ++Q +   +  
Sbjct: 420 RREKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGTRFPEGSDDREAARVMVQEVDRLNRV 479

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRER 115
               +   R +            +    +++       K          +          
Sbjct: 480 ISDLIGLSRPSDIRPRPTRVADIVDHALRLVRPDAEARKVAVRFEAAPDVPEALVDPDRF 539

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVES 174
           A+ LLN+ +    ++  GG++ ++     +     S++  G     PE  +++ D    +
Sbjct: 540 AQALLNVCLNGMEAMGDGGELMVTAYRHGDGRVAVSVRDTGPGI-SPENLSRVFDPYFTT 598

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +   +   +       H    + +L 
Sbjct: 599 KGQGTGLGLAIVHKIIEAHGGEVGFRSEPGHGTECTFILP 638


>gi|229163580|ref|ZP_04291529.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
 gi|228619830|gb|EEK76707.1| hypothetical protein bcere0009_43460 [Bacillus cereus R309803]
          Length = 571

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 410 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRVSVIGDPSRLKQIFINLI 469

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566


>gi|163942321|ref|YP_001647205.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163864518|gb|ABY45577.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 587

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G     + L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPGRLKQIFINLI 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582


>gi|229013791|ref|ZP_04170919.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
 gi|229062272|ref|ZP_04199593.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228717000|gb|EEL68681.1| hypothetical protein bcere0026_43420 [Bacillus cereus AH603]
 gi|228747460|gb|EEL97335.1| hypothetical protein bmyco0001_42000 [Bacillus mycoides DSM 2048]
          Length = 545

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G     + L  +  +         +  +V        I       +I +NL 
Sbjct: 384 QQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPGRLKQIFINLI 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540


>gi|229135423|ref|ZP_04264210.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
 gi|228647984|gb|EEL04032.1| hypothetical protein bcere0014_43180 [Bacillus cereus BDRD-ST196]
          Length = 545

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G     + L  +  +         +  +V        I       +I +NL 
Sbjct: 384 QQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPGRLKQIFINLI 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540


>gi|229169314|ref|ZP_04297024.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
 gi|228614077|gb|EEK71192.1| hypothetical protein bcere0007_42640 [Bacillus cereus AH621]
          Length = 545

 Score =  129 bits (325), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G     + L  +  +         +  +V        I       +I +NL 
Sbjct: 384 QQGFKLNMGTVDMKELLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPGRLKQIFINLI 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540


>gi|222055650|ref|YP_002538012.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221564939|gb|ACM20911.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 376

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
                 +  L  L  + + + H+I +P+G+I  + E+L +       + E + +    + 
Sbjct: 143 EEQLRRAEKLSTLGEMAAVLAHEIRNPLGSIRGTAEILKDDYKPGDPKQEFIDIQIKETE 202

Query: 59  SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++                    +    +  +                S       
Sbjct: 203 RLNRVVEDFLHMARPQPADMQLCPIQEELETIVALLSNDARGRQISLVLKPASAPVIISA 262

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169
              +  +  LN+ + +  + P GG VTI+    +        + +G      E   +I +
Sbjct: 263 DGEKLRQAFLNIIINSLQATPPGGSVTITTTPYEAGSCEICFRDSGPGI-DAETMDRIFE 321

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  D   +       +   +   +  E    H  +++ +L 
Sbjct: 322 PFFTTKPDGTGLGLAITKKIIESHGGTMQVESEVGHGTIVNVILP 366


>gi|108763685|ref|YP_632372.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108467565|gb|ABF92750.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 429

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMD----LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---- 50
           +A+    +   ++    L AL  + + + H++ +P+ ++    +LL E    D V+    
Sbjct: 202 LAQREALS-EELERGRRLAALGTMSAVLAHELRNPLASLKGHAQLLAERVERDAVLAPKA 260

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWTGEK 108
             +   ++     +  +                 D+ +  V     A  +   +      
Sbjct: 261 DRVVSEAVRLEQLMNDLLGFVASGELRRVEADPNDVLRAAVESTGAARVEARYLPDRTPW 320

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +    + L N+   A  + P G +V  +V+   +  +F++K +G      E+  +I 
Sbjct: 321 PLDAGRLQQALENVLRNAVQASPEGQRVEATVERQDSSLVFTVKDHGPGIAAGEE-ERIF 379

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +   +    +       +   +   +               + 
Sbjct: 380 EPFITGRMRGVGLGLAITRRIVELHGGTVSARSHAGGGAEFRLTVP 425


>gi|297531061|ref|YP_003672336.1| GAF sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297254313|gb|ADI27759.1| GAF sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 546

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
               + S  L A+  + + I H++ +P+ AI  + +LL      +  I   +  +     
Sbjct: 311 EAQLVQSGKLAAIGEMAAGIAHELNNPLTAILGNAQLLLRSFSKDDRIYKLLFDIYSCGK 370

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KID 110
               I    +  +       +       +EQV+        +  +S              
Sbjct: 371 RCKTIIQNLLTFSRQDEYRFEDCSINDAVEQVLGLIGDQICKQNISIQKRLDASIELIEG 430

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKINGNLARFPE 162
             ++ ++++LNL + A  +L         +           ++  + S++ NG       
Sbjct: 431 NLQQISQVILNLLINAKDALEEMDIPEKIIVIETKSIVEAGEHWVVLSVRDNGKGIEEQH 490

Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                              +     + +A  +   +               L K
Sbjct: 491 LQEIFNPFFTTKRPGKGTGLGLSVSLGIAEAHGGTIEVVSELGKGSEFILKLPK 544


>gi|218780792|ref|YP_002432110.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762176|gb|ACL04642.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 494

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 19/232 (8%), Positives = 65/232 (28%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           +       + +    AL  L + + H+I +P+  I    E+    L +  +  + ++ I 
Sbjct: 256 LRSAQERLIQADRNAALGRLSASVAHEINNPLSGILMFSEIMQRSLKDDPVYRDDLKEII 315

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKI 109
             ++     ++ +      + + +    + +  +                V+  +  +  
Sbjct: 316 DQTLRCKAIVRNLLGFSRKSDNGNEPFDIPEAFRQCLDIVLPQAKFQGIEVKCDFQPDMP 375

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  +R ++      +   +           +               + NG      E  
Sbjct: 376 KMQADRVQMQQVFTNLVLNAADALEGKGLICIKARHDFESGYFFMEFRDNGPGVAQGEL- 434

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +        +       + H +   +  E   +   + +  L 
Sbjct: 435 EKIFESFYTTKPVGYGTGLGLSITQDIIHNHGGTIGVENHPEGGTIFTIRLP 486


>gi|326942371|gb|AEA18267.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|296505060|ref|YP_003666760.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
 gi|296326112|gb|ADH09040.1| phosphate regulon sensor protein phoR [Bacillus thuringiensis
           BMB171]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|228941767|ref|ZP_04104314.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974691|ref|ZP_04135257.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785094|gb|EEM33107.1| hypothetical protein bthur0003_44440 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817979|gb|EEM64057.1| hypothetical protein bthur0008_44030 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 558

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553


>gi|228981285|ref|ZP_04141585.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
 gi|228778485|gb|EEM26752.1| hypothetical protein bthur0002_44460 [Bacillus thuringiensis Bt407]
          Length = 545

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 384 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 503 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 540


>gi|218780111|ref|YP_002431429.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761495|gb|ACL03961.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 396

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 70/221 (31%), Gaps = 17/221 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63
               L A+  L + + H+I +P+  I  S  L+ E       E E + LI   ++     
Sbjct: 159 DQEKLAAIGRLAAGVAHEINNPLTTILTSAMLIQEDIPADNPEHEELALIAKEALRCRNI 218

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +  +      +    S   + DI       V +     D R+     G +I    ++A+I
Sbjct: 219 VSNLLDFARQSEPCKSDQDVNDIVAEAAALVRKPANFKDIRLTCDLHGREIQAHCDKAQI 278

Query: 119 LLNLFM---VAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L  L      A  +   GG +T   +     N    ++   G          +I +    
Sbjct: 279 LQCLVNLALNAIDATEPGGTITFETKLLPEGNWMEITVADTGPGLPEN-IVDKIFEPFFT 337

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +          +++  +  E   D     +  L 
Sbjct: 338 TKPTGTGLGLSITHGFVRQHRGFISVENRADIGAAFTIRLP 378


>gi|229158190|ref|ZP_04286257.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
 gi|228625148|gb|EEK81908.1| hypothetical protein bcere0010_43680 [Bacillus cereus ATCC 4342]
          Length = 558

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553


>gi|52140921|ref|YP_085908.1| phosphate regulon sensor protein [Bacillus cereus E33L]
 gi|51974390|gb|AAU15940.1| phosphate regulon sensor protein [Bacillus cereus E33L]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|47564998|ref|ZP_00236041.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
 gi|47557784|gb|EAL16109.1| sensory box histidine kinase PhoR [Bacillus cereus G9241]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|310825294|ref|YP_003957652.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398366|gb|ADO75825.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 873

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           +A+     +    L AL  L + + H++ +P+GAI NS+  +  +         ++ ++ 
Sbjct: 631 LARAQQQLVQRERLAALGELSAVVAHEVRNPLGAIFNSVATIRRMVGPFHPSLPLVDIVG 690

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111
             +      +  +             + L  + + +      D    +            
Sbjct: 691 EEADRLNRIVDDLLNFARPPSPSPMPVPLRKLLEDVVRGAMADASNNIRVEWALEPDVPP 750

Query: 112 ----SRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEKF 164
                R   +  LNL + +  ++ +GG +      V   ++E        G+     +  
Sbjct: 751 VLADERMIRQAFLNLAINSVQAMLQGGTLRVGARRVPGPRHEVQVEFTDTGSGI-PSDVR 809

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +      +    V  +   +   +  E           LL 
Sbjct: 810 ARIFEPFFTTKAKGTGLGLALVKRIVEAHAGSVSLESQPGQGTTFRLLLP 859


>gi|253700258|ref|YP_003021447.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M21]
 gi|251775108|gb|ACT17689.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M21]
          Length = 538

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 79/231 (34%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57
           M +       +  L A+  L +R+ H+I +P+ AI  S++L+     ++++  +L  +  
Sbjct: 308 MKRLAAELKRADRLAAVGELSARMAHEIRNPLAAISGSVQLVALRPCVDEKDKRLFSIIL 367

Query: 58  MSAIIRLKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    +R    Y                +  L  +         V    +V     
Sbjct: 368 RETDRLDGLLRDFLFYAKPTQPTKIPLKLRQVIADLCSLLSTDPRLDGVTIENRVPDDLV 427

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEK 163
            +    + +++  NL + +  ++   G + I        +K E   S++ +G+     E 
Sbjct: 428 VVFDKDQCSQVFWNLVVNSAEAIAGEGTIVIEASAVRSGAKGEARISVRDSGSGMSQGEV 487

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +      +    V  +   +  R++ +  +     ++  L 
Sbjct: 488 K-RVFEPFFTTKKGGTGLGLATVYRIVETHGGRMVVDSAEGAGTTVTLYLP 537


>gi|115373530|ref|ZP_01460827.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115369536|gb|EAU68474.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 812

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           +A+     +    L AL  L + + H++ +P+GAI NS+  +  +         ++ ++ 
Sbjct: 570 LARAQQQLVQRERLAALGELSAVVAHEVRNPLGAIFNSVATIRRMVGPFHPSLPLVDIVG 629

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111
             +      +  +             + L  + + +      D    +            
Sbjct: 630 EEADRLNRIVDDLLNFARPPSPSPMPVPLRKLLEDVVRGAMADASNNIRVEWALEPDVPP 689

Query: 112 ----SRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEKF 164
                R   +  LNL + +  ++ +GG +      V   ++E        G+     +  
Sbjct: 690 VLADERMIRQAFLNLAINSVQAMLQGGTLRVGARRVPGPRHEVQVEFTDTGSGI-PSDVR 748

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +      +    V  +   +   +  E           LL 
Sbjct: 749 ARIFEPFFTTKAKGTGLGLALVKRIVEAHAGSVSLESQPGQGTTFRLLLP 798


>gi|74314497|ref|YP_312916.1| sensor protein ZraS [Shigella sonnei Ss046]
 gi|73857974|gb|AAZ90681.1| sensor kinase for HydG, hydrogenase 3 activity [Shigella sonnei
           Ss046]
 gi|323167474|gb|EFZ53182.1| sensor protein zraS [Shigella sonnei 53G]
          Length = 458

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|228917226|ref|ZP_04080783.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228935895|ref|ZP_04098705.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948312|ref|ZP_04110595.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811299|gb|EEM57637.1| hypothetical protein bthur0007_44380 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823663|gb|EEM69485.1| hypothetical protein bthur0009_43400 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228842427|gb|EEM87518.1| hypothetical protein bthur0012_44380 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 571

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 410 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 469

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566


>gi|229186843|ref|ZP_04313998.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
 gi|228596580|gb|EEK54245.1| hypothetical protein bcere0004_43840 [Bacillus cereus BGSC 6E1]
          Length = 567

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 346 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 405

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 406 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 465

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 466 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 524

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 525 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 562


>gi|228929635|ref|ZP_04092653.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229124154|ref|ZP_04253346.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228659456|gb|EEL15104.1| hypothetical protein bcere0016_44390 [Bacillus cereus 95/8201]
 gi|228830022|gb|EEM75641.1| hypothetical protein bthur0010_43190 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 567

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 346 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 405

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 406 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 465

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 466 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 524

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 525 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 562


>gi|196040901|ref|ZP_03108199.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
 gi|196028355|gb|EDX66964.1| sensory box histidine kinase PhoR [Bacillus cereus NVH0597-99]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|118479735|ref|YP_896886.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118418960|gb|ABK87379.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|49478694|ref|YP_038633.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330250|gb|AAT60896.1| phosphate regulon sensor protein [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|49187478|ref|YP_030730.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
 gi|49181405|gb|AAT56781.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Sterne]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|30264658|ref|NP_847035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47530128|ref|YP_021477.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|65321955|ref|ZP_00394914.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869708|ref|ZP_02214366.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167633978|ref|ZP_02392301.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|167638013|ref|ZP_02396291.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|170685740|ref|ZP_02876963.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|170705359|ref|ZP_02895823.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|177651147|ref|ZP_02933978.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190569089|ref|ZP_03021989.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|196032783|ref|ZP_03100196.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218905815|ref|YP_002453649.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227817372|ref|YP_002817381.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229600397|ref|YP_002868867.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|254687395|ref|ZP_05151251.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724958|ref|ZP_05186741.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A1055]
 gi|254736695|ref|ZP_05194401.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Western
           North America USA6153]
 gi|254741732|ref|ZP_05199419.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Kruger
           B]
 gi|254754670|ref|ZP_05206705.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Vollum]
 gi|254757502|ref|ZP_05209529.1| sensory box histidine kinase PhoR [Bacillus anthracis str.
           Australia 94]
 gi|301056093|ref|YP_003794304.1| phosphate regulon sensor protein [Bacillus anthracis CI]
 gi|30259333|gb|AAP28521.1| sensory box histidine kinase PhoR [Bacillus anthracis str. Ames]
 gi|47505276|gb|AAT33952.1| sensory box histidine kinase PhoR [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|164714537|gb|EDR20056.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0488]
 gi|167513830|gb|EDR89198.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0193]
 gi|167530779|gb|EDR93481.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0442]
 gi|170129484|gb|EDS98347.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0389]
 gi|170670204|gb|EDT20944.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0465]
 gi|172082973|gb|EDT68035.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0174]
 gi|190559871|gb|EDV13856.1| sensory box histidine kinase PhoR [Bacillus anthracis
           Tsiankovskii-I]
 gi|195994212|gb|EDX58167.1| sensory box histidine kinase PhoR [Bacillus cereus W]
 gi|218540120|gb|ACK92518.1| sensory box histidine kinase PhoR [Bacillus cereus AH820]
 gi|227004296|gb|ACP14039.1| sensory box histidine kinase PhoR [Bacillus anthracis str. CDC 684]
 gi|229264805|gb|ACQ46442.1| sensory box histidine kinase PhoR [Bacillus anthracis str. A0248]
 gi|300378262|gb|ADK07166.1| phosphate regulon sensor protein [Bacillus cereus biovar anthracis
           str. CI]
          Length = 587

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|320179533|gb|EFW54484.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Shigella boydii ATCC 9905]
          Length = 458

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +                 
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 448


>gi|320109410|ref|YP_004185000.1| integral membrane sensor signal transduction histidine kinase
           [Terriglobus saanensis SP1PR4]
 gi|319927931|gb|ADV85006.1| integral membrane sensor signal transduction histidine kinase
           [Terriglobus saanensis SP1PR4]
          Length = 481

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMS 59
           AK+      S  L  LL   I H++ +P+ +I  +   L  ++   E + ++L+ +    
Sbjct: 248 AKSEAAK-ESERLRTLLLDSITHELRTPLTSIKGAATTLLSNDNISEADRLELLTIVDEE 306

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----------- 108
           +    + +  A        + + +      +E+ I   +                     
Sbjct: 307 SDRLNRLVSQAVEMAQLEANEVHMTFAPMSMEEAIGRAREACAHVEQMHPLQVSLPPLPP 366

Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       K+L NL   A      G  + +S     +E + S+   G      E+    
Sbjct: 367 VMADIEVVIKVLCNLLENAAKYSAEGSPIFVSAVHEGDEVLTSVADRGIGIPSDEQPLIF 426

Query: 168 VDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    I    +       +   +  ++       H  V +  L 
Sbjct: 427 DRLYRARSQGGTIPGTGMGLAISRAIVEAHGGKITVTSQPGHGSVFTFSLP 477


>gi|218707622|ref|YP_002415141.1| sensor protein ZraS [Escherichia coli UMN026]
 gi|293407620|ref|ZP_06651538.1| sensor protein ZRas [Escherichia coli FVEC1412]
 gi|298383368|ref|ZP_06992960.1| sensor protein ZRas [Escherichia coli FVEC1302]
 gi|300897582|ref|ZP_07115991.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|331665660|ref|ZP_08366556.1| sensor protein ZraS [Escherichia coli TA143]
 gi|218434719|emb|CAR15651.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli UMN026]
 gi|291425388|gb|EFE98428.1| sensor protein ZRas [Escherichia coli FVEC1412]
 gi|298276247|gb|EFI17768.1| sensor protein ZRas [Escherichia coli FVEC1302]
 gi|300358658|gb|EFJ74528.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|331057178|gb|EGI29170.1| sensor protein ZraS [Escherichia coli TA143]
          Length = 458

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|298384963|ref|ZP_06994522.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262107|gb|EFI04972.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 931

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 20/230 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++    +  +    L  + + H+I +P+ AI    +LL +    +E  + I++   + 
Sbjct: 698 LARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVDTENIEERREYIQIVKENN 755

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +                       G VD  +   DI + ++  +  +  +       + 
Sbjct: 756 DLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKENVELMFDPHLAEC 815

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +R    +++ N    A      G       Q    E  F ++  G      E    
Sbjct: 816 RIISDRNRLHQVISNFVNNAIKFTSEGSIRVGYKQK-GEELEFYVQDTGVGI-DAESQAH 873

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  V   S +    +       +  +   ++  E            L 
Sbjct: 874 IFERFVKLNSFVHGTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923


>gi|253570165|ref|ZP_04847574.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840546|gb|EES68628.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 931

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 20/230 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++    +  +    L  + + H+I +P+ AI    +LL +    +E  + I++   + 
Sbjct: 698 LARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVDTENIEERREYIQIVKENN 755

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +                       G VD  +   DI + ++  +  +  +       + 
Sbjct: 756 DLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKENVELMFDPHLAEC 815

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +R    +++ N    A      G       Q    E  F ++  G      E    
Sbjct: 816 RIISDRNRLHQVISNFVNNAIKFTSEGSIRVGYKQK-GEELEFYVQDTGVGI-DAESQAH 873

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  V   S +    +       +  +   ++  E            L 
Sbjct: 874 IFERFVKLNSFVHGTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 923


>gi|229099048|ref|ZP_04229982.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
 gi|229118079|ref|ZP_04247438.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228665302|gb|EEL20785.1| hypothetical protein bcere0017_43480 [Bacillus cereus Rock1-3]
 gi|228684276|gb|EEL38220.1| hypothetical protein bcere0020_42710 [Bacillus cereus Rock3-29]
          Length = 571

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                           L  +  +         +  +V V      I       +I +NL 
Sbjct: 410 QQGFKLNMETVDMKGILEDIHMVLDNKAGEKEISLQVNVLKRVSVIGDPGRLKQIFINLI 469

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 566


>gi|218780372|ref|YP_002431690.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761756|gb|ACL04222.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 507

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 56/228 (24%), Gaps = 19/228 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-- 60
                 +  L ++  L S I H+I +P+G I    +LL      +               
Sbjct: 271 EARMAQADKLASIGELSSGIAHEINNPLGIILGYTQLLLRNEDPENERHADLRIIEKHVK 330

Query: 61  ------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSR 113
                    L F R         D    + ++ Q +          +   ++ +      
Sbjct: 331 SCKVIVEDLLSFARGGETMKEPTDLHEVIDEVLQFLHHEPGRQDLAISKEYSLDLPLAHV 390

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIV 168
           ++ KI   +  +   +          +  +            +K NG      +   +I 
Sbjct: 391 DKKKIRQVIMNLVINASHAVEGRGKILLATDFNPERGLASIWVKDNGPGI-PKQNMARIF 449

Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +        +       +   +   +  E            L 
Sbjct: 450 DPFFTTKPTGQGTGLGLSVSYGIIKSHGGDISVESAPGEGAAFHITLP 497


>gi|39995392|ref|NP_951343.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982155|gb|AAR33616.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|298504393|gb|ADI83116.1| sensor histidine kinase, GAF and GAF domain-containing,
           nonconserved putative heme-binding site [Geobacter
           sulfurreducens KN400]
          Length = 600

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 61/232 (26%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSS 57
           +       L    L A+  + + I H+I +P+ ++      L      E E      +  
Sbjct: 367 LQDAKERLLQEEKLAAIGRMAASIAHEIKNPLVSVGGFAGRLKRKFTPESEEWLYADVIG 426

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEKI 109
                  K +     ++           I Q+IE             +  V   +     
Sbjct: 427 REVQHLEKMLSDILFFSRKTTICYTRCGINQIIEDGLATMAVPLEQREIVVDKRFASRLP 486

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPE 162
            L  +  ++      +   +L       +   ++              +   G+    P+
Sbjct: 487 TLLGDCQQLRHVFTNLISNALDVMEPQGVLTIETGLARIDGKRAVSVKVGDTGSGI-APD 545

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I      +      +    V  +   +  R+  E   +   + + +L 
Sbjct: 546 VRHSIFTPFFTTKEKGTGLGLAIVHRIITNHGGRIEVENRPEGGALFTVVLP 597


>gi|29349465|ref|NP_812968.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341374|gb|AAO79162.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 921

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 20/230 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++    +  +    L  + + H+I +P+ AI    +LL +    +E  + I++   + 
Sbjct: 688 LARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVDTENIEERREYIQIVKENN 745

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +                       G VD  +   DI + ++  +  +  +       + 
Sbjct: 746 DLLLQLISDILDLSKIEAGTFEFTNGDVDVNMLCEDIVRSMQMKVKENVELMFDPHLAEC 805

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +R    +++ N    A      G       Q    E  F ++  G      E    
Sbjct: 806 RIISDRNRLHQVISNFVNNAIKFTSEGSIRVGYKQK-GEELEFYVQDTGVGI-DAESQAH 863

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  V   S +    +       +  +   ++  E            L 
Sbjct: 864 IFERFVKLNSFVHGTGLGLSICQSIVEQMGGKIGVESEPGKGSRFWFSLP 913


>gi|237704694|ref|ZP_04535175.1| sensory histidine kinase AtoS [Escherichia sp. 3_2_53FAA]
 gi|226901060|gb|EEH87319.1| sensory histidine kinase AtoS [Escherichia sp. 3_2_53FAA]
          Length = 612

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 377 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTRDPIHQEYLSVVLK 436

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 437 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 496

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG+         +
Sbjct: 497 INADRELLKQVLLNILINAVQAISARGKIRIRTWQYSDSQQAISIEDNGSGIDLS-LQKK 555

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++       +  +    + +L 
Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDFRVASLPGYGATFTLILP 603


>gi|150392007|ref|YP_001322056.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951869|gb|ABR50397.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 530

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 68/225 (30%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +++   +++    AL  + + I H+I +P+  +   L+L      +     LI L    
Sbjct: 303 KESVIQAINTEKYAALGQIATGIAHEIKNPLTVVKGYLQLQRYKIGKPIDEDLIDLMCEE 362

Query: 60  AII----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                          +            + +  +  + +   D   +        T +  
Sbjct: 363 MDRASSIVEEFLVLGRRGDPQMTPCEMTNLVEEVLSVLKHEADKKGISVNRSYQNTSKIQ 422

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +   ++L+N+      ++ + GK+ + V     E +  ++  G           I  
Sbjct: 423 ADIQRIKQVLMNIIKNGIEAMEQNGKLMVEVFLKGEEVVTVIQDTGEGIPHKFSKY-IGT 481

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +  +   +       +   +  R+  +  +      +  L 
Sbjct: 482 PYMTTKENGTGLGLSVSYEIIRVHGGRIDFQSEEGVGTTFTIYLP 526


>gi|228951815|ref|ZP_04113913.1| hypothetical protein bthur0006_12290 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807738|gb|EEM54259.1| hypothetical protein bthur0006_12290 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 508

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504


>gi|206968567|ref|ZP_03229523.1| sensor histidine kinase KinD [Bacillus cereus AH1134]
 gi|206737487|gb|EDZ54634.1| sensor histidine kinase KinD [Bacillus cereus AH1134]
          Length = 498

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494


>gi|324009495|gb|EGB78714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
          Length = 458

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERASAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|86159761|ref|YP_466546.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776272|gb|ABC83109.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 581

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           +A+       +  + A   +  R+ H+I +P+  I  S+E L E           I DE 
Sbjct: 340 LAQGRVRLAQAERIAAWREVARRLAHEIKNPLTPIAMSVETLREAHAQGRADFPEIFDEG 399

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVS 103
            Q I          +              + +   ++   +                   
Sbjct: 400 TQAIGEEVRRLKRIVDEFSRFARLPAPERAEVPAEELAAAVLALFPAAPPGVEVERAIAP 459

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +    +  ++LLNL   A  ++P GG++ ++    ++   F +  +G      + 
Sbjct: 460 DLPAVLADRDQVMQVLLNLVRNALDAMPSGGRLRLAAYRDRDAVAFEVSDSGPGIAPGDL 519

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +      +       +A E+   L            +  L 
Sbjct: 520 -ERVFEPYFTTKPGGTGLGLAIARRIAEEHGGALDAASSPGAGATFTLRLP 569


>gi|218692284|ref|YP_002400496.1| sensor protein ZraS [Escherichia coli ED1a]
 gi|306812018|ref|ZP_07446226.1| sensor protein ZraS [Escherichia coli NC101]
 gi|331660564|ref|ZP_08361497.1| sensor protein ZraS [Escherichia coli TA206]
 gi|218429848|emb|CAR10816.2| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli ED1a]
 gi|222035714|emb|CAP78459.1| Sensor protein zraS (EC 27133) [Escherichia coli LF82]
 gi|305854623|gb|EFM55059.1| sensor protein ZraS [Escherichia coli NC101]
 gi|312948577|gb|ADR29404.1| sensor protein ZraS [Escherichia coli O83:H1 str. NRG 857C]
 gi|331052347|gb|EGI24385.1| sensor protein ZraS [Escherichia coli TA206]
          Length = 458

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERASAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|154685764|ref|YP_001420925.1| KinE [Bacillus amyloliquefaciens FZB42]
 gi|154351615|gb|ABS73694.1| KinE [Bacillus amyloliquefaciens FZB42]
          Length = 739

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 73/227 (32%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           AK +   L   D   +V  L + I H+I +P+ A+   ++LL    E         +   
Sbjct: 502 AKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSIEGEYSLYFNVITSE 561

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111
                 I  +F+ LA       +       ++     +      V+ ++ ++ TG    +
Sbjct: 562 LKRIESIITEFLILAKPQAILYEEKDVTQIMKDTADLLNAQANLVNVQIHLNLTGNIPPI 621

Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             E  ++      +   ++                 ++  + S++  G      +K  ++
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQSSDQDHILISIQDEGTGI-SEDKLKRL 680

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++ R+  E  +    V    L 
Sbjct: 681 GEPFYTTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLP 727


>gi|323190139|gb|EFZ75417.1| sensor protein zraS [Escherichia coli RN587/1]
          Length = 458

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERASAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|78222272|ref|YP_384019.1| GAF sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78193527|gb|ABB31294.1| GAF sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 552

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----- 54
            K     + +  L AL  + + + H++ SP+  I  + +LL     +D            
Sbjct: 311 TKMEAQLVQTAKLAALGEMAAGVAHELNSPMTVIIGTAQLLLRELQQDAQYDRAEVLEDI 370

Query: 55  -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
                         L F R        +D  + +  +  +I+  I  ++   V     + 
Sbjct: 371 VNSGLRCKRIIQNLLTFSRQNQPPVTDIDLNVEVERVLSMIQYQINRNQIKIVEQLAPFL 430

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--------QDSKNENIFSLKINGNL 157
                   +  ++L NL + A  +L    +    +        +D K   + S++ NG  
Sbjct: 431 PRLTANGSQIQQVLTNLLINARDALGEVDRKEKVITVATALLVRDRKKWAVLSVRDNGTG 490

Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE  ++I      S        +     + +A  +   +  E         S LL 
Sbjct: 491 I-APENLSKIFTPFYTSKEATKGTGLGLSVSLGIAESHNGTIEVESRLGEGSTFSLLLP 548


>gi|146297551|ref|YP_001181322.1| multi-sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145411127|gb|ABP68131.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 68/228 (29%), Gaps = 24/228 (10%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
               L ++     + + H++ +PI  I    E L +      + + + +I          
Sbjct: 335 QQAKLDSMRKQFVANVSHELRTPITTIKTYSETLLDVDNEETKKQFLSVIIKECDRMTRL 394

Query: 64  LKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +  +                     + +  + +  ++            +      +   
Sbjct: 395 VSDLLYLSRLDSGENILNLEEVNLSELVRFVCEKLKIHAKKKNQTLSCSILQDIVAMVDR 454

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++L+NL   A   +  GG++ + +Q  +++    +K NG      +   +I +   
Sbjct: 455 DKIEQVLINLISNAVTYVQEGGQINVVLQKEEDKIKIIVKDNGPGIPEEDLP-RIFERFY 513

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +       +   +  ++L E         + +L 
Sbjct: 514 RVDKARSRELGGSGLGLSIADEIVKAHGGKILVESKVGSGTTFTVVLP 561


>gi|194434754|ref|ZP_03067005.1| sensor histidine kinase ZraS [Shigella dysenteriae 1012]
 gi|194416978|gb|EDX33096.1| sensor histidine kinase ZraS [Shigella dysenteriae 1012]
 gi|332085390|gb|EGI90560.1| sensor protein zraS [Shigella dysenteriae 155-74]
          Length = 458

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +                 
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 448


>gi|228910412|ref|ZP_04074227.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
 gi|228849178|gb|EEM94017.1| hypothetical protein bthur0013_45590 [Bacillus thuringiensis IBL
           200]
          Length = 558

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553


>gi|228923332|ref|ZP_04086620.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836286|gb|EEM81639.1| hypothetical protein bthur0011_43110 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 545

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 384 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540


>gi|228903105|ref|ZP_04067241.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
 gi|228967685|ref|ZP_04128705.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792018|gb|EEM39600.1| hypothetical protein bthur0004_44770 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856514|gb|EEN01038.1| hypothetical protein bthur0014_42710 [Bacillus thuringiensis IBL
           4222]
          Length = 558

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553


>gi|229048295|ref|ZP_04193863.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
 gi|228723020|gb|EEL74397.1| hypothetical protein bcere0027_42630 [Bacillus cereus AH676]
          Length = 558

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553


>gi|228954857|ref|ZP_04116877.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229072090|ref|ZP_04205299.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|229081840|ref|ZP_04214332.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|229112053|ref|ZP_04241596.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|229129872|ref|ZP_04258838.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228653563|gb|EEL09435.1| hypothetical protein bcere0015_43120 [Bacillus cereus BDRD-Cer4]
 gi|228671376|gb|EEL26677.1| hypothetical protein bcere0018_42960 [Bacillus cereus Rock1-15]
 gi|228701428|gb|EEL53922.1| hypothetical protein bcere0023_44680 [Bacillus cereus Rock4-2]
 gi|228711024|gb|EEL62990.1| hypothetical protein bcere0025_42560 [Bacillus cereus F65185]
 gi|228804846|gb|EEM51445.1| hypothetical protein bthur0006_42240 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 558

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553


>gi|228960857|ref|ZP_04122490.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229147148|ref|ZP_04275506.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228636258|gb|EEK92730.1| hypothetical protein bcere0012_42840 [Bacillus cereus BDRD-ST24]
 gi|228798753|gb|EEM45733.1| hypothetical protein bthur0005_43120 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 545

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 384 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540


>gi|229152783|ref|ZP_04280966.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
 gi|228630603|gb|EEK87249.1| hypothetical protein bcere0011_43150 [Bacillus cereus m1550]
          Length = 558

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553


>gi|229180907|ref|ZP_04308242.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
 gi|229192789|ref|ZP_04319747.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228590628|gb|EEK48489.1| hypothetical protein bcere0002_44400 [Bacillus cereus ATCC 10876]
 gi|228602464|gb|EEK59950.1| hypothetical protein bcere0005_42510 [Bacillus cereus 172560W]
          Length = 558

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 553


>gi|218233234|ref|YP_002369384.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
 gi|218161191|gb|ACK61183.1| sensory box histidine kinase PhoR [Bacillus cereus B4264]
          Length = 587

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582


>gi|206969804|ref|ZP_03230758.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
 gi|206735492|gb|EDZ52660.1| sensory box histidine kinase PhoR [Bacillus cereus AH1134]
          Length = 587

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582


>gi|30022663|ref|NP_834294.1| phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
 gi|29898222|gb|AAP11495.1| Phosphate regulon sensor protein phoR [Bacillus cereus ATCC 14579]
          Length = 587

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582


>gi|75762015|ref|ZP_00741929.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218899741|ref|YP_002448152.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
 gi|74490501|gb|EAO53803.1| Phosphate regulon sensor protein phoR [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542354|gb|ACK94748.1| sensory box histidine kinase PhoR [Bacillus cereus G9842]
          Length = 587

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 64/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V V      I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNVLKRASVIGDPSRLKQIFINLI 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 582


>gi|219848904|ref|YP_002463337.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219543163|gb|ACL24901.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 801

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 68/235 (28%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
            +     + S  L AL  L + + H++ +P+ ++    +LL             ++ I  
Sbjct: 416 RRLEQQLIQSDKLSALGQLVAGVAHELNNPLTSVSGYAQLLLRKRALDEDTRSDLEQIHQ 475

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
            +  A   ++ + +         S++ + D+ Q      +      +  VQ+    +   
Sbjct: 476 QADRAGRIVRNLLMFAREHKPERSVVQINDVVQRALALQVYQLRVDNITVQLELDPQLPK 535

Query: 111 LSRERAKILLNLFM---VAHASLPRG------GKVTISVQDSKNENIFSLKINGNLARFP 161
              +  ++   L      A  ++          +  +            +   G      
Sbjct: 536 TVADPHQLQQVLLNLITNARQAMTERGGGTLTIRTALCDTTDGPHIEIVVADTGIGIPAQ 595

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I +    +        +       +  E++ ++  E  +     +   L 
Sbjct: 596 YL-DKIFNPFFTTKPVGQGTGLGLAICYGIIKEHQGQIWAESREGVGTRIFIRLP 649


>gi|42783765|ref|NP_981012.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
 gi|42739695|gb|AAS43620.1| sensory box histidine kinase PhoR [Bacillus cereus ATCC 10987]
          Length = 587

 Score =  129 bits (324), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVTTLKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|110644338|ref|YP_672068.1| sensor protein ZraS [Escherichia coli 536]
 gi|191174288|ref|ZP_03035796.1| sensor histidine kinase ZraS [Escherichia coli F11]
 gi|215489335|ref|YP_002331766.1| sensor protein ZraS [Escherichia coli O127:H6 str. E2348/69]
 gi|300985438|ref|ZP_07177441.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|312965343|ref|ZP_07779576.1| sensor protein zraS [Escherichia coli 2362-75]
 gi|110345930|gb|ABG72167.1| sensor protein ZraS [Escherichia coli 536]
 gi|190905420|gb|EDV65051.1| sensor histidine kinase ZraS [Escherichia coli F11]
 gi|215267407|emb|CAS11858.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli O127:H6 str. E2348/69]
 gi|300306530|gb|EFJ61050.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|312290017|gb|EFR17904.1| sensor protein zraS [Escherichia coli 2362-75]
 gi|320197101|gb|EFW71719.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Escherichia coli WV_060327]
 gi|324015257|gb|EGB84476.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 458

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERASAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|172057086|ref|YP_001813546.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989607|gb|ACB60529.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 679

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           +++        + + L S + H++ +P+ +I+   EL+     +       +Q I   S 
Sbjct: 438 RDVTAETEVDRMKSELVSTVSHELRTPLSSIYGFTELMLKRKLDPERNKRYLQTIHDESK 497

Query: 59  SAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                +                       +D++       Q   +   +   V  +    
Sbjct: 498 RLTDLVSDFLNVQRMESGKHSYDKEVFDLIDTVREQTRFYQASTEQHRLQLDVDENHEFL 557

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L NL   A    P GG V IS+    N+   S++  G            
Sbjct: 558 IHADKNSMKQLLGNLLHNAIKYSPDGGDVVISLTHHHNQIELSVRDFGLGIPSSAMPHLF 617

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        I    +       +   +   +  E I     V   LL 
Sbjct: 618 SKFYRVDNSDSRKIGGTGLGLSICKEIVRAHDGNIDVESILGEGTVFKVLLP 669


>gi|153006422|ref|YP_001380747.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029995|gb|ABS27763.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 516

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 76/229 (33%), Gaps = 17/229 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L  +  + A+  L   + H+I +P+G I    +L+         ++ ++L   
Sbjct: 283 EREVTQRLFQAEKMSAIGQLAGGVAHEINNPLGGILAFAQLMSREERTPADLESLKLIQD 342

Query: 59  SAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +A+              R      G VD      D   ++   +   +   V        
Sbjct: 343 AAMRAKRIVESLLRFSRRPRNEEKGPVDVAQVAEDALFLLRPQMKDGRIEVVRDYRAATA 402

Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
              + +  +I +NL + A  ++   G++T++V  +       S+   G     PE   +I
Sbjct: 403 LGNANQLQQIFVNLVVNAIQAMAGAGRLTVAVGPAAAGRVRASVADTGPGV-RPEIAKRI 461

Query: 168 VDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  +     +       +A ++   +  E   +        L 
Sbjct: 462 FEPFFTTKPEGKGTGLGLSICYQIAEDHGGSIRVEPGPEGGACFVVDLP 510


>gi|53803483|ref|YP_114634.1| sensor histidine kinase KdpD [Methylococcus capsulatus str. Bath]
 gi|53757244|gb|AAU91535.1| sensor histidine kinase KdpD [Methylococcus capsulatus str. Bath]
          Length = 910

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
           A+     + S  L   L S I HD+ +P+  I  S   L       +     +    +  
Sbjct: 663 ARINQVRMESERLRNSLLSSISHDLRTPLATIVGSASTLVEGDYALEPEDRRELCRAIYD 722

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEK 108
            S   A +    + +A+   G V   +    +E+++   +         + V V    + 
Sbjct: 723 ESRRMASLVNNILDMAWFDAGVVKLHLQWHVLEEIVGTVLTRLKKQLERRPVTVRLPRDA 782

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
             +  +     ++L NL   A    P    + I+ + +      ++  +G      +   
Sbjct: 783 PFVYVDSVMLEQVLANLMENAIRYTPENSPIEIAAEATPFTMTITVSDHGPGIPKGQEEL 842

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    + E       +       +   +   +          V + +L 
Sbjct: 843 IFEKFYRVHREGPQSGVGLGLAICRAIVEAHGGYIRARNRAGGGAVFTIVLP 894


>gi|302390527|ref|YP_003826348.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201155|gb|ADL08725.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 463

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 67/232 (28%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           MA+ I     S +L   L + I H++ +PI  I  +LE + E         ++ L    S
Sbjct: 233 MAEKIR---KSEELRRNLTADIAHELRTPIAIIQGTLESIQEGVLEPTPALMLSLQEEVS 289

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK---- 108
               +      L+    G ++               +     A  K ++      +    
Sbjct: 290 RMTRLIKDLSDLSLVEAGKLELNRIKIFPAELAGKFIHFKAEAEAKGIRFDINFPRNLPA 349

Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    +I+ NL   A      G     + +       F ++  G+  +  +    F
Sbjct: 350 VYADPTRLVQIITNLLSNALKHTSSGRIELSAEKAEGGVV-FKVQDTGSGIKKEDLPYIF 408

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +         +       L   +  R+  E  +    V S  + 
Sbjct: 409 ERFYRAEKSRSRKTGGTGLGLAITKGLVEAHGGRIWVESREGEGSVFSFFIP 460


>gi|298527667|ref|ZP_07015071.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511319|gb|EFI35221.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 853

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            K +   +     LVA+  L + + H+I +P+G I   +ELL                + 
Sbjct: 621 QKQMEQKIQQTEKLVAMGQLAAGVAHEINNPLGVILCYVELLKRQFSEVPQGQEDLVTIE 680

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
           +  R         L+F R       +      L ++   V E F     +++     +  
Sbjct: 681 KQARNCKRIVSDLLEFARSGETSKHTASLNQTLEEVLGMVGEQFKKQGVQIETDLDPDLP 740

Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163
            +  +     ++ +NL M A  ++                 +        NG        
Sbjct: 741 QMEMDTNKIKQVFMNLLMNARQAMDGRDGKMHISTRYMAQDSLARVIFWDNGEGIPEY-M 799

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +    +   +       +  E+   ++ E            L 
Sbjct: 800 QDKIFDPFFSTKRTGEGTGLGLSVSYGIIREHGGEIIVESRPGEWTRFVIELP 852


>gi|218702638|ref|YP_002410267.1| sensor protein ZraS [Escherichia coli IAI39]
 gi|218372624|emb|CAR20499.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli IAI39]
          Length = 458

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|116513325|ref|YP_812231.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092640|gb|ABJ57793.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 620

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++   + + D      S + H++ +P+ ++   +E L      +  I  + + + +  + 
Sbjct: 366 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 425

Query: 59  SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             I                     +++      +  ++    + + +Q        +  +
Sbjct: 426 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 485

Query: 101 QVSWTGEKIDLSRERAKILL---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +     + + +  +  +++    N+   A    P GG +T+ +  ++N+ + S+   G  
Sbjct: 486 KRDLGNQALWVEIDTDQMMRAIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 545

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  + H       
Sbjct: 546 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 605

Query: 213 LE 214
           L 
Sbjct: 606 LP 607


>gi|229198736|ref|ZP_04325434.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
 gi|228584758|gb|EEK42878.1| hypothetical protein bcere0001_42600 [Bacillus cereus m1293]
          Length = 558

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 397 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553


>gi|229916393|ref|YP_002885039.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229467822|gb|ACQ69594.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 575

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 68/225 (30%), Gaps = 21/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I    E L +       + D+ + +I+  +    + ++ 
Sbjct: 350 EKMRKDFVANVSHELKTPLTSIRGFSETLLDGAKEVPELRDQFLDIIQKEATRMQMLVED 409

Query: 67  M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +           ++          +  +  +        ++    +   T          
Sbjct: 410 LLELSRLERDDFQMELVSVDLNQLVDEVCLLLSQKASKKSIQLEAKHEGTVVLQADLNRM 469

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            ++++NL   A    P G +V I+V+   +     +K NG      E    F +    + 
Sbjct: 470 KQVIMNLVANAINYSPEGSRVEIAVEAKADSYKLRVKDNGIGIAEKEVSRIFERFYRVDK 529

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     +    V  +   +   +  E  +      +    +
Sbjct: 530 ARSRNSGGTGLGLAIVKHIIDLHHATIDVESEEGKGTTFTITFPR 574


>gi|78224119|ref|YP_385866.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter metallireducens GS-15]
 gi|78195374|gb|ABB33141.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter metallireducens GS-15]
          Length = 541

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 55/229 (24%), Gaps = 16/229 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
            K     + S  L +L  L + I H+I +P+  I     LL             + LI  
Sbjct: 288 KKIQSQLVHSEKLASLGELVAGIAHEINNPLTGILVFASLLASDSKLDPSLKGDLDLIVK 347

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
            +      +K +      +        L  I       V       D  V   +  +  +
Sbjct: 348 ETQRCARIVKGLLDFSRESMPQKKPSSLNAIMDATLTLVCNQSSFHDINVIKEYNPDIPE 407

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFT 165
           ++ +  +I      +   +    G        +  +        ++  NG          
Sbjct: 408 MNLDPNQIEQVFINLLLNACHAIGGPGEIRIRTGFDQEREEAYAAITDNGCGIPEEHLSK 467

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +   +  R+            +  L 
Sbjct: 468 IFDPFFSTKENKGTGLGLSVSYGIIEGHGGRIEVRSTMGAGTTFTCWLP 516


>gi|293413439|ref|ZP_06656099.1| sensor protein zRas [Escherichia coli B354]
 gi|291468034|gb|EFF10533.1| sensor protein zRas [Escherichia coli B354]
          Length = 469

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 242 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 301

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 302 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 361

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 362 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 420

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 421 AEGTGLGLAVVHNIVEQHGGTIQVASQEGRGATFTLWLP 459


>gi|91203275|emb|CAJ72914.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 818

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 67/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + K +     +  + +   + + H++ +P+ AI    E+L +     +  E    ++   
Sbjct: 290 LQKAVSALKRANRMKSEFLANMSHELRTPLNAIIGFAEVLKDKLCGELNAEQEDFVKDIH 349

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QV 102
            S    L+ +      +      + L     ++ D I     +                 
Sbjct: 350 SSGRHLLQMINDILDLSKIEAGKMELQYESFLVSDAIEDVYTILKGLAKKKQLQLKTVIQ 409

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +      +  +IL NL   +    P+ G +T +      +   S+  +G     PE
Sbjct: 410 EDVKDIEADRVKFKQILYNLLSNSIKFTPQNGTITTNAAIVDGKMQVSVSDSGIGI-KPE 468

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++               +   +       +   +  ++  +            + 
Sbjct: 469 DREKVFKEFWQADSSFSRKYEGTGLGLALTRRIVEMHGGKIWLKSEYGKGSTFYFTIP 526


>gi|78043135|ref|YP_360865.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995250|gb|ABB14149.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 449

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 69/226 (30%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   LE L +  +ED       +Q++   +      +  
Sbjct: 216 EKMRSEFIANVSHELRTPLTSIKGFLETLLDGALEDKTIAKHFLQIMNSETERLTRLIDD 275

Query: 67  M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +             A       + +  +  + +   +   +   + +      +    + 
Sbjct: 276 LLSLSKIEAKKVDFAPKPLMLQELIQKMKLLFKSRLEEKELSFIISLPENLPLVLADGDM 335

Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L+NL   A    P GGK+ ++     +     +K  G      E   +I +     
Sbjct: 336 ISQVLINLIDNAIKYTPAGGKIEVTAAVKGSWVEVVVKDTGIGI-PEESQKRIFERFYRV 394

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +    V  +   +  ++  +            + 
Sbjct: 395 DKARSRELGGTGLGLAIVKHIIELHNGKVWVKSKVGEGSAFGFTIP 440


>gi|322420041|ref|YP_004199264.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320126428|gb|ADW13988.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 832

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            +N+   +  +D L +L  L + I H++ +P+  I   L+ L         +  +  + +
Sbjct: 603 RENLHEEMMRLDRLASLGKLSAGIAHEVRNPLTGISLLLDDLHDQASSNSADKELIKKAI 662

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             I          L +           D    + D   ++       +       G    
Sbjct: 663 SEIERVEKLVNALLSYSSPVRAEFRECDLNRLVNDTVLLMRRPCEKQQVQLTMDEGAVPP 722

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +     + +LN+   A  +LP+GG++ +S    +   + S+  +G      +    I
Sbjct: 723 FRLDPEKIKQAVLNIIKNAQQALPKGGRINVSTGVREGCAVISISDDGPGIAAEDLPL-I 781

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E++  +  E         +  L 
Sbjct: 782 FEPFFTRKGAGTGLGLSITQRIIEEHQGMIRVESAQGLGTRFTVELP 828


>gi|86159802|ref|YP_466587.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776313|gb|ABC83150.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 548

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 71/235 (30%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-------D 47
           +       + +  L +L  L + I H+I +P+  I    +L    L E   +        
Sbjct: 287 LRNAQEQLVRTEKLSSLGKLSASIAHEINNPLAGILTFAKLVSRTLAEGPPDDARRAVLQ 346

Query: 48  EVMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             + L+   +          L F R        VD    + +   +I + IA+       
Sbjct: 347 RNLGLVEREAQRCSAIVRNLLDFARERPMAKKPVDPGAAVEEALSLIANQIAIQGVKLQR 406

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLAR 159
                  +  +  ++      VA  +    G    ++ +S +  +     +   +G    
Sbjct: 407 DLPPLPQVLADFGQLRQAFVNVAMNACEAMGAKGGRLRVSARAPEGAVEIAFADDGPGM- 465

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE+ + I D    +      +    V  +   +   +  +  +      +  L 
Sbjct: 466 PPERVSHIFDPFFTTKEKGTGLGLSVVYGIVQRHGGSIAVDSTEGQGTTFTLRLP 520


>gi|311067879|ref|YP_003972802.1| histidine kinase phosphorylating Spo0A [Bacillus atrophaeus 1942]
 gi|310868396|gb|ADP31871.1| histidine kinase phosphorylating Spo0A [Bacillus atrophaeus 1942]
          Length = 499

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           +        ++L+  L +   H+I +P+  I   ++LL +      +     +I      
Sbjct: 274 ERAENEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKSEEDQLYFSIIEQEIKR 333

Query: 60  AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKID 110
                       K     +      D    +  I     +   V+  +            
Sbjct: 334 INQIVSEFLVLGKPTAEKWELNSLQDIFNEIMPIIYSEGNLYNVEVELTFLTDKPLYVKC 393

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +++LN+   +  S+  GGK++IS+  +  + I  +  NG      E    I   
Sbjct: 394 TKDHMKQVILNVAKNSLESMQDGGKLSISLGAADQKAIIKVIDNGEGI-SKEMLEHIFLP 452

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V S      +       +       +  +        ++  L 
Sbjct: 453 FVTSKEKGTGLGLVVCKRIVLMYGGTITIDSELRKGTEVTITLP 496


>gi|331649857|ref|ZP_08350935.1| sensor protein ZraS [Escherichia coli M605]
 gi|330908319|gb|EGH36838.1| sensor protein of zinc sigma-54-dependent two-component system
           [Escherichia coli AA86]
 gi|331041323|gb|EGI13475.1| sensor protein ZraS [Escherichia coli M605]
          Length = 458

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++  +    +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTYLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G + ++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVINVTASESGAGVKISVTDSGKGIAADQL-DAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|148264074|ref|YP_001230780.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146397574|gb|ABQ26207.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 422

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 74/226 (32%), Gaps = 14/226 (6%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            +     +     L  L  + + + H+I +P+  I    +++++   E+   +  +    
Sbjct: 186 EERHQMEMAHRESLARLGEMGAMLAHEIRNPLAGIKGYAQVIEKRPAEERNRKFAQSIVN 245

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEK 108
             +     +     Y  +  + + L D   +I   +           V   ++       
Sbjct: 246 EVLRLENLVNELLAYVRNESTSMNLIDSGGLISHAVSLIRQEAEQLHVAVSIECPENLPV 305

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  S    ++LLNLF  A  ++P GG + IS   + +    ++  +G      E   +I 
Sbjct: 306 LGNSDRLVQVLLNLFKNALQAMPDGGSLRISAGIAGSAVSITVADSGAGI-SQEDMARIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +  E+   +           +S  L 
Sbjct: 365 EPFFTTKARGTGLGLALCKKIIGEHNGTISVSSRVGQGTSVSITLP 410


>gi|210622340|ref|ZP_03293109.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275]
 gi|210154328|gb|EEA85334.1| hypothetical protein CLOHIR_01057 [Clostridium hiranonis DSM 13275]
          Length = 427

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 65/233 (27%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++I   + + ++     + + H++ +P+ +I    E L      +    +  + +I   +
Sbjct: 192 EDISERVRAENMRKDFVANVSHELKTPLTSISGFAETLKLNENIDKETRNRFLTIIDGEA 251

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIG----------LGDIEQVIEDFIAVDKRVQVSWTGE 107
                 ++ +                         + D+  +      +    +   +  
Sbjct: 252 NRLRRLIEDILTLSFIENDKKEEKEAINLYSVYRRVEDMLMISAKTKNIALACEADESIS 311

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +    +I+LNL   A    P  G V + +   K   +  +   G      E  ++I
Sbjct: 312 LQANADYVKQIILNLVDNAIKYTPENGAVNVKIFTEKENAVIKVSDTGMGI-PKEDQSRI 370

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            I    +       +       +  E   +     +  + 
Sbjct: 371 FERFYRVDKARSREIGGTGLGLAITKHIVMNLGGTISVESELEKGSTFTVKIP 423


>gi|291485343|dbj|BAI86418.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 579

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 72/238 (30%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M +          +     + + H++ +PI +I    E L     ++     E + +I  
Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396

Query: 56  SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S      ++ +                    + + +     +          + ++   
Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLVEIETLLKHKADEKGISLHLNVPK 456

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   +S +     ++ LNL   A    P GG V I+V+  + +    +  +G   +  E 
Sbjct: 457 DPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEI 516

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +                 +    V  L   ++ ++          V +  L++
Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGRGTVFTVTLKR 573


>gi|315300746|gb|EFU59971.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 16-3]
          Length = 458

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|91212790|ref|YP_542776.1| sensor protein ZraS [Escherichia coli UTI89]
 gi|117626265|ref|YP_859588.1| sensor protein ZraS [Escherichia coli APEC O1]
 gi|218561069|ref|YP_002393982.1| sensor protein ZraS [Escherichia coli S88]
 gi|237702770|ref|ZP_04533251.1| sensor protein ZraS [Escherichia sp. 3_2_53FAA]
 gi|91074364|gb|ABE09245.1| sensor protein ZraS [Escherichia coli UTI89]
 gi|115515389|gb|ABJ03464.1| ZraS, sensory histidine kinase in two-component regulatory system
           with ZraR [Escherichia coli APEC O1]
 gi|218367838|emb|CAR05633.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli S88]
 gi|226903083|gb|EEH89342.1| sensor protein ZraS [Escherichia sp. 3_2_53FAA]
 gi|294490815|gb|ADE89571.1| sensor histidine kinase ZraS [Escherichia coli IHE3034]
 gi|307628380|gb|ADN72684.1| sensor protein ZraS [Escherichia coli UM146]
 gi|315288329|gb|EFU47728.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 110-3]
 gi|323948826|gb|EGB44723.1| hsp90-like protein [Escherichia coli H252]
          Length = 458

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|229177841|ref|ZP_04305214.1| hypothetical protein bcere0005_12050 [Bacillus cereus 172560W]
 gi|228605632|gb|EEK63080.1| hypothetical protein bcere0005_12050 [Bacillus cereus 172560W]
          Length = 486

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482


>gi|218896366|ref|YP_002444777.1| sensor histidine kinase KinD [Bacillus cereus G9842]
 gi|218542017|gb|ACK94411.1| sensor histidine kinase KinD [Bacillus cereus G9842]
          Length = 498

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494


>gi|75759336|ref|ZP_00739433.1| Sporulation kinase D [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74493168|gb|EAO56287.1| Sporulation kinase D [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 508

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504


>gi|170021994|ref|YP_001726948.1| sensor protein ZraS [Escherichia coli ATCC 8739]
 gi|188496229|ref|ZP_03003499.1| sensor histidine kinase ZraS [Escherichia coli 53638]
 gi|194439784|ref|ZP_03071851.1| sensor histidine kinase ZraS [Escherichia coli 101-1]
 gi|300919422|ref|ZP_07135926.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300928823|ref|ZP_07144331.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|169756922|gb|ACA79621.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli ATCC 8739]
 gi|188491428|gb|EDU66531.1| sensor histidine kinase ZraS [Escherichia coli 53638]
 gi|194421281|gb|EDX37301.1| sensor histidine kinase ZraS [Escherichia coli 101-1]
 gi|300413515|gb|EFJ96825.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300463204|gb|EFK26697.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|309704419|emb|CBJ03768.1| Two-component system sensor protein [Escherichia coli ETEC H10407]
 gi|323958930|gb|EGB54605.1| hsp90-like protein [Escherichia coli H489]
 gi|323969077|gb|EGB64385.1| hsp90-like protein [Escherichia coli TA007]
 gi|332345994|gb|AEE59328.1| Sensor histidine kinase ZraS [Escherichia coli UMNK88]
          Length = 458

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +                 
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAAGQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 448


>gi|331655704|ref|ZP_08356694.1| sensor protein ZraS [Escherichia coli M718]
 gi|331046629|gb|EGI18716.1| sensor protein ZraS [Escherichia coli M718]
          Length = 458

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGTGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +    ++      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASLEGKGATFTLWLP 448


>gi|162457083|ref|YP_001619450.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161167665|emb|CAN98970.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 526

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           + +    ++    L A+  L + + H++ +P+GAI N+   L +              ++
Sbjct: 282 LREAQASSVRVERLAAIGQLAASVGHELRNPLGAIRNATHYLKKRLAGTEVGAEPRVAQL 341

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSW 104
           + L+    +S    +  +           +   L       +  V        + +  + 
Sbjct: 342 LGLMEKELLSCNRIIGDLLDFARERRLRRTACPLAPLVDDAMSVVEPPAHVRLENLVPAA 401

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162
                    +  ++L+NL   A  ++P   +  + V  +         +  NG      E
Sbjct: 402 LPVPSLDKDQFRQVLVNLIQNAAEAIPVEREGWVRVVGRVCDEAVSLEVADNGEGI-EEE 460

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +I +    + +    +       +   +   +  E         +  L +
Sbjct: 461 HLAKIFEPLFSTKLKGTGLGLAITAGIVRLHGGTIAVESAPGAGTTFTIRLPR 513


>gi|104773346|ref|YP_618326.1| two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103422427|emb|CAI96976.1| Two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
          Length = 631

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++   + + D      S + H++ +P+ ++   +E L      +  I  + + + +  + 
Sbjct: 377 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 436

Query: 59  SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             I                     +++      +  ++    + + +Q        +  +
Sbjct: 437 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 496

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +     + + +  +     +++ N+   A    P GG +T+ +  ++N+ + S+   G  
Sbjct: 497 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 556

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  + H       
Sbjct: 557 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 616

Query: 213 LE 214
           L 
Sbjct: 617 LP 618


>gi|323953785|gb|EGB49592.1| hsp90-like protein [Escherichia coli H263]
          Length = 458

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|147679019|ref|YP_001213234.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146275116|dbj|BAF60865.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 589

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 68/229 (29%), Gaps = 23/229 (10%)

Query: 8   NLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAI 61
            L  ++L      + + H++ +P+ +I   LE L +         +  +++I   ++   
Sbjct: 354 ELRKLELLRRDFVANVSHELRTPLTSIQGFLEALMDGTIGESQARERYLKVIHQETLRLN 413

Query: 62  IRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKI 109
             +  +                 +D    +G +   ++  I   +              +
Sbjct: 414 RLINELLDLAQIESGKVRWEINPIDVPSLVGRVILKLKPQIERHQITVVPEMPEGLPLML 473

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
                  ++L NL   A    P G  VT+     + +    +   G      +    + +
Sbjct: 474 GNEDRIEQVLTNLLENAVRYSPPGSTVTVRAAGREGKITVEVADRGPGIPPEDLPHIWER 533

Query: 167 IVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +   ++    +    V  +   +  ++  +       V S  L
Sbjct: 534 FHRVEKSRSRSLGGTGLGLAIVRQIIEAHGGQVDVQSEAGQGSVFSFTL 582


>gi|323702938|ref|ZP_08114595.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532069|gb|EGB21951.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
          Length = 623

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 62/226 (27%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS 57
           M            L +L  L + + H+I +P+ +I   ++          + +  I    
Sbjct: 387 MRLEEQVRRQ-ERLASLGKLVAGVAHEIKNPLTSISGYIQYWQRSKAPTAKSLNTIYREV 445

Query: 58  MS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                     L F +        V     + ++     +  A   +  +       D+  
Sbjct: 446 RRLDSIVNKLLFFAKPTNQVLTRVSLNQFVEEVLNFFTETQADGIKFTLKLQENLPDVYI 505

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-----IFSLKINGNLARFPEKFTQIV 168
           +  +I   L  +   ++         +  + ++         ++  G      +   ++ 
Sbjct: 506 DPGQIEQVLINIIFNAIQAMPGGGEIMVSTGHQAAENLFYIEVRDTGCGV-PEQLLDKLF 564

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       + H +  R+  +  +     +  L  
Sbjct: 565 DPFFTTKAKGTGLGLTIAHEIMHAHGGRIEVKSREGAGTTVQILFP 610


>gi|319651062|ref|ZP_08005196.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317397232|gb|EFV77936.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 607

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 65/234 (27%), Gaps = 25/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +    ++   +      + + H++ +P+  + + LE L      +  I    + + +  
Sbjct: 368 TEQEKIDMERRE----FVANVSHELRTPLTTMRSYLEALAEGAWRDEEIAPNFLDVTQNE 423

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
           +   I  +  +            L           + I     +             +  
Sbjct: 424 TERMIRLVNDLLQLSKMDSKDYRLTKDWTDFIFFYNRIIDRFEMTKQQNVTFERKLPDHS 483

Query: 116 ----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
                      ++L N+   A    P GGKVT S+++     + S+   G         +
Sbjct: 484 AFVEIDEDKLTQVLDNIISNALKYSPEGGKVTFSIEEKDEFIVVSVSDQGVGIPKENIDQ 543

Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +      +    +       +   +  ++     +     +S  L 
Sbjct: 544 IFERFYRVDKARTRKLGGTGLGLAIAKEMVEAHGGKIWAASTEGKGTTISFSLP 597


>gi|311067865|ref|YP_003972788.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310868382|gb|ADP31857.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 739

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 80/227 (35%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49
            K +   L   D   +V  L + I H+I +P+ A+   ++LL      D           
Sbjct: 502 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSVEGDYALYFNVITSE 561

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           ++ I       +I  K   + +      D +    D+     +   V   + +  T   I
Sbjct: 562 LKRIESIITEFLILAKPQAIMYEEKNVTDIMQDTMDLLHAQANLSNVQMHLDLIETIPPI 621

Query: 110 DLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A   +P+GG V + +Q S  +  + SL+  G      +K  ++
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGNVYVKIQPSGTDHILISLQDEGIGI-TEDKLKRL 680

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++ ++  E  +    V    L 
Sbjct: 681 GEPFYTTKERGTGLGLMVSYKIIEEHQGKITVESEEGRGTVFHLTLP 727


>gi|228987835|ref|ZP_04147944.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771883|gb|EEM20340.1| hypothetical protein bthur0001_45030 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 558

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 397 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLKQIFINLM 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553


>gi|325685238|gb|EGD27356.1| sensor histidine kinase VicK [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 631

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++   + + D      S + H++ +P+ ++   +E L      +  I  + + + +  + 
Sbjct: 377 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 436

Query: 59  SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             I                     +++      +  ++    + + +Q        +  +
Sbjct: 437 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 496

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +     + + +  +     +++ N+   A    P GG +T+ +  ++N+ + S+   G  
Sbjct: 497 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 556

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  + H       
Sbjct: 557 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 616

Query: 213 LE 214
           L 
Sbjct: 617 LP 618


>gi|226314891|ref|YP_002774787.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226097841|dbj|BAH46283.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 478

 Score =  129 bits (323), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 73/225 (32%), Gaps = 12/225 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            ++      S  L  L  L + I H+I +P+ A+   ++L++ +     + +Q++R    
Sbjct: 245 RQSEELLRYSDKLSVLGELAAGIAHEIRNPLTALKGFIQLMEGDEFANQQYLQIMRSEID 304

Query: 59  SAIIRLKFMRLAFGYTGSV-----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---D 110
                   + +                +    I+ +    +  +  +   +         
Sbjct: 305 RITSITSELLIMAKPQTLRFAPNGLLPLLSSVIKLLEPQALLKNVSILTDFPQVTSLILC 364

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++ +N+      ++P GG +TI V +  ++ I  +   G      E   ++ + 
Sbjct: 365 EEYQIKQVFINIIKNGMEAMPLGGNLTIKVVERPSDVIIRISDQGQGI-PAELLPRLGEL 423

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +       +  ++   +           +S  + K
Sbjct: 424 FYSTKETGTGLGLMVSTKIIRDHGGTINIASDVGKGTTVSISIPK 468


>gi|332637970|ref|ZP_08416833.1| histidine protein kinase; sensor protein [Weissella cibaria KACC
           11862]
          Length = 629

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 71/233 (30%), Gaps = 28/233 (12%)

Query: 10  SSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAII 62
             ++L      S + H++ +P+ ++ + ++ L E  I+D  +           ++    +
Sbjct: 379 QRIELERRQFVSNVSHELRTPLTSVKSYVDALQEGAIDDPEVARNFLAVAQDETTRMIHM 438

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------- 114
               + L+   +G++       ++ ++    +     +  +    +   + +        
Sbjct: 439 INDLLELSRMDSGTMKLETEYVNVGELFNYILNRFDMIIANDDKPEKYYTIKREIPKVQI 498

Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ N+   A    P GG VT  + D++ E + S+   G      +    
Sbjct: 499 WVELDTSKFTQVIDNIMNNAIKYSPDGGVVTARMIDNQKEVVLSITDQGLGIPKKDLGHI 558

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +       +      R+  E  +      S  L 
Sbjct: 559 FDRFFRVDKARSRAQGGTGLGLAISKEIIERFGGRIWVESAEGQGSTFSISLP 611


>gi|325124951|gb|ADY84281.1| Putative histidine kinase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 635

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++   + + D      S + H++ +P+ ++   +E L      +  I  + + + +  + 
Sbjct: 381 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 440

Query: 59  SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             I                     +++      +  ++    + + +Q        +  +
Sbjct: 441 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 500

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +     + + +  +     +++ N+   A    P GG +T+ +  ++N+ + S+   G  
Sbjct: 501 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 560

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  + H       
Sbjct: 561 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 620

Query: 213 LE 214
           L 
Sbjct: 621 LP 622


>gi|300811608|ref|ZP_07092088.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497403|gb|EFK32445.1| PAS domain S-box protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 635

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 77/242 (31%), Gaps = 31/242 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++   + + D      S + H++ +P+ ++   +E L      +  I  + + + +  + 
Sbjct: 381 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 440

Query: 59  SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             I                     +++      +  ++    + + +Q        +  +
Sbjct: 441 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVSHLLNRFDMIVEHDQGEAQSDTKEYVI 500

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +     + + +  +     +++ N+   A    P GG +T+ +  ++N+ + S+   G  
Sbjct: 501 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 560

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  + H       
Sbjct: 561 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 620

Query: 213 LE 214
           L 
Sbjct: 621 LP 622


>gi|218887238|ref|YP_002436559.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758192|gb|ACL09091.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 729

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 23/227 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59
               L A+  L + + H++ +P+ +I            E  ++      ++Q +   +  
Sbjct: 443 RREKLAAIGSLAAGVAHELRNPLSSIKGYATYFGSRFDEGSEDREAARVMVQEVERLNRV 502

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKID-------- 110
               +   R +      VD+   +  + ++  +D       V+V   G +          
Sbjct: 503 ISDLIGLARPSDIAPRPVDAGFLVHHVLRLVRQDAAHRGVTVRVEPDGAQDGAVGSLPRA 562

Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQI 167
                  ++ LLN+F+ A  ++P GG++++       N    +++  G     PE    I
Sbjct: 563 LLDPDRFSQALLNVFLNALEAMPSGGELSVRLAAAPGNRIAVAVRDTGTGI-APEHLATI 621

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V  +   +   +           ++ LL 
Sbjct: 622 FDPYFTTKSQGTGLGLAIVHKIVEAHGGEVSLRSALGQGTEITFLLP 668


>gi|258404339|ref|YP_003197081.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
 gi|257796566|gb|ACV67503.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
          Length = 408

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDE----------------VGIEDEVM 50
            +  +    +L + + H++ +P+  I    + +L                      + ++
Sbjct: 163 QAEKMATIGMLAAGVAHEVNNPLAGIQGFAQGILRRLPRVQEAVDEELANDFQEYTETIL 222

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
           Q            L F R       S+     + D  +V++  I   + + +    E   
Sbjct: 223 QECNRCQEIVRTLLTFSRPRESAFCSLSMNNLIRDTLKVLQHRIKRHQGLLLQEDLEPEL 282

Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +++LNL   A  ++   G +TI    ++++    ++  G      E   
Sbjct: 283 PLVCGDEPHLKQVILNLLTNALDAIGEEGVITIRTSSTESQVALCVEDTGEGI-PEEHLD 341

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++ +    +        I       + H +   +  +   +       +L K
Sbjct: 342 KLFEPFFTTKPVGRGTGIGLSTCYTIVHNHGGEISVKSAPEKGSRFCVVLPK 393


>gi|253775367|ref|YP_003038198.1| sensor protein ZraS [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163945|ref|YP_003047053.1| sensor protein ZraS [Escherichia coli B str. REL606]
 gi|297519349|ref|ZP_06937735.1| sensor protein ZraS [Escherichia coli OP50]
 gi|253326411|gb|ACT31013.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975846|gb|ACT41517.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli B str. REL606]
 gi|253980002|gb|ACT45672.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli BL21(DE3)]
 gi|313848811|emb|CAQ34350.2| ZraS [Escherichia coli BL21(DE3)]
          Length = 458

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ +R       +VD    +    Q++           +                 
Sbjct: 291 VSELLELVRPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPVIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAAGQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLCLP 448


>gi|229189516|ref|ZP_04316532.1| hypothetical protein bcere0002_11950 [Bacillus cereus ATCC 10876]
 gi|228593961|gb|EEK51764.1| hypothetical protein bcere0002_11950 [Bacillus cereus ATCC 10876]
          Length = 486

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482


>gi|309792129|ref|ZP_07686601.1| sensor histidine kinase PAS domain-containing protein
           [Oscillochloris trichoides DG6]
 gi|308225670|gb|EFO79426.1| sensor histidine kinase PAS domain-containing protein
           [Oscillochloris trichoides DG6]
          Length = 663

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 74/229 (32%), Gaps = 16/229 (6%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
            + +   L  S  + +L  +   I H+I +P+  I  S +LL++   + E+ Q       
Sbjct: 432 RRRLEAQLAQSAKIASLGVMAGGIAHEIRNPLAIIAASAQLLEDHPDDPELRQQCVQKIV 491

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              + +S+     LKF          ++    L +   ++   + V + +        + 
Sbjct: 492 TSAQRASLIIEQLLKFSHPPQERFRPLNIHATLEETFNLLNHQMLVSQVILRRDFSPDVP 551

Query: 111 LSRER----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL + A  ++P+GG++T++ + S           G+          
Sbjct: 552 RLYGNPELLQQVFTNLILNACNAMPQGGQLTVTTRLSGEHVELRFTDTGHGITKEHAAKI 611

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   T+     +       +  +++  L               L 
Sbjct: 612 FDPFFTTRTVGKGTGLGLSISYSIIQQHQGTLEVVSEPGTGATFVIRLP 660


>gi|229078619|ref|ZP_04211176.1| hypothetical protein bcere0023_12840 [Bacillus cereus Rock4-2]
 gi|228704689|gb|EEL57118.1| hypothetical protein bcere0023_12840 [Bacillus cereus Rock4-2]
          Length = 486

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482


>gi|229172537|ref|ZP_04300096.1| hypothetical protein bcere0006_16490 [Bacillus cereus MM3]
 gi|228611008|gb|EEK68271.1| hypothetical protein bcere0006_16490 [Bacillus cereus MM3]
          Length = 483

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59
           + +++   +        L S I HD+ +PI AI   ++ + E        +         
Sbjct: 243 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 302

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
            +  +  +         +D        E+V  +    D   ++    +   ++       
Sbjct: 303 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGITVRWDAQK 362

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160
                         +++ N+   +   + +             +     +K NG      
Sbjct: 363 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 422

Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +    +           +       +  ++   +  E        L+  L+K
Sbjct: 423 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 481


>gi|229003976|ref|ZP_04161781.1| hypothetical protein bmyco0002_9450 [Bacillus mycoides Rock1-4]
 gi|228757252|gb|EEM06492.1| hypothetical protein bmyco0002_9450 [Bacillus mycoides Rock1-4]
          Length = 542

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 19/221 (8%), Positives = 63/221 (28%), Gaps = 11/221 (4%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
            +     ++  V  L + I H++ +P+  I   ++LL +     ++    +         
Sbjct: 313 ELLKKSDTLKAVGQLAAGIAHEVRNPLTVIKGFMQLLQQEAGEDKEYFRLIFSEIRGIET 372

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------DLSRE 114
           I  +F+ +A       +       ++ V+           +  T               +
Sbjct: 373 ILQEFLSIAKPNVVVFEPKNLCTILDNVVALISTQAIMKNIHITLNMDFENLLVECCEIQ 432

Query: 115 RAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             ++  N+   +  ++           + +  E +  +   G     PE+  ++ +    
Sbjct: 433 LKQVFFNILQNSIEAIQNGQEITINVKKHNSTEVMICISDKGVGI-PPERIKRLGEPFYS 491

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +   +  ++           +   L 
Sbjct: 492 TKEKGTGVGLMISYQIIESHGGKINIRSQVGKGTTVIVFLP 532


>gi|197117920|ref|YP_002138347.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087280|gb|ACH38551.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 488

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 67/227 (29%), Gaps = 15/227 (6%)

Query: 3   KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +     + S  + +  LL + + H+I +P+ AI     +L E       + + ++ I   
Sbjct: 257 EARNEAIRSEKMASVGLLAAGMAHEIGTPLAAIMGYSGILSEEVAGDPEKSDYLRRITEE 316

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------GEK 108
           S      ++ +       GS    I +  + + + + +     +++              
Sbjct: 317 SKRIDRIVRGLLDYARPKGSQREEIEVLQLLEKVVELLEAQGALKLLEVTVEAEPSLPRL 376

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++L+NL M A  ++P+GGK+ +            +   G             
Sbjct: 377 YADPHQLEQLLINLIMNAKDAMPKGGKLQLKGMSVGGGVAIEVADTGEGMPPEHLPLVFD 436

Query: 169 DGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       +A      L  +            L 
Sbjct: 437 PFFTTKEPGKGTGLGLAIAARIAESCGGTLTVQSELGEGSRFRLTLP 483


>gi|300938771|ref|ZP_07153484.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300456281|gb|EFK19774.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 458

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|229068985|ref|ZP_04202278.1| hypothetical protein bcere0025_11930 [Bacillus cereus F65185]
 gi|228714097|gb|EEL65979.1| hypothetical protein bcere0025_11930 [Bacillus cereus F65185]
          Length = 486

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSNDTLTIVVKNNETHAQLHITDTGKGI-PQHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482


>gi|196047471|ref|ZP_03114682.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225866565|ref|YP_002751943.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
 gi|196021686|gb|EDX60382.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB108]
 gi|225790974|gb|ACO31191.1| sensory box histidine kinase PhoR [Bacillus cereus 03BB102]
          Length = 587

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 61/218 (27%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 75  G-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                           L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLSVGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 582


>gi|147678975|ref|YP_001213190.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146275072|dbj|BAF60821.1| hypothetical signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 582

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 72/237 (30%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQ 51
            K     + S  L A+  + + + H++ + +  I  + +LL         E     +++ 
Sbjct: 340 TKMEAQLMQSAKLAAIGEMAAGVAHELNNQMTVIIGTAQLLLRDKEEGSFESEALKDIVN 399

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107
                       L F R         D    +  +  +I+  I  +K V V         
Sbjct: 400 CGLRCKKIIQNLLTFSRQDRYPLAPTDLNDVVERVLSLIQYQINRNKIVIVKDLAPDLPR 459

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLAR 159
               S++  ++L+N  + A  +L    +                  + + +++ NG    
Sbjct: 460 ITANSQQIQQVLINFLLNARDALEGLEREGRIEISSSLREVEGEGKKVVVTVRDNGVGI- 518

Query: 160 FPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I +    S        +     + +A  +   +  +         S +L 
Sbjct: 519 EKENLPKIFNPFYTSKDASKGTGLGLSVSLGIAEAHGGCIEVDSTPGEGSTFSLVLP 575


>gi|197118049|ref|YP_002138476.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087409|gb|ACH38680.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
          Length = 396

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 63/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     + S  L +L  L + + H+I +P+ +I   ++L+     E E +  +     
Sbjct: 166 LRRAQAEVVQSEKLASLGYLSAGMAHEIRNPLNSIALFVQLIKTGLDEHERLDYVEKILK 225

Query: 59  SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   +                          L      +            S    
Sbjct: 226 EVDRIDNILAKLLDASKRPKFEISEVRVDRVLEHTLDAFTPQLRQKRIRAVTDFKSIPPA 285

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I  NLF+ +   +P  G + + ++  +      +   G     PE    I
Sbjct: 286 IKADPMEIEQIFTNLFLNSIYVMPEEGTLAVELEGDEQWITVRVSDTGPGI-PPENLPNI 344

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V+ +    K ++  E  D         L 
Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKTYKGKIEVEKSDSLGTTFLVRLP 391


>gi|94968803|ref|YP_590851.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Candidatus Koribacter versatilis Ellin345]
 gi|94550853|gb|ABF40777.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Candidatus Koribacter versatilis Ellin345]
          Length = 1255

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 63/230 (27%), Gaps = 23/230 (10%)

Query: 5    ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIR 54
                + S  + A+  L S + H++ +P+ AI    +LL                 +Q  +
Sbjct: 1016 QAKLIHSEKMAAVGQLVSGVAHEVNNPLTAIMGYADLLTSSPDIPPDARRDLGIILQEAQ 1075

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111
             +       L F R +  +   VD    L    Q+ +                 +     
Sbjct: 1076 RTKQIVQNLLSFARQSVPHREPVDLNAVLARTLQLRQYDFVNHGVRVEEDLDPNLPPVLG 1135

Query: 112  -SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPEKFTQI 167
              ++  ++ LN+   A+ ++    +       +          +  NG     P+   +I
Sbjct: 1136 DPQQLQQVFLNVVNNAYDAVREVARPPAVRISTGAVNGVVEVQISDNGPGISMPD---RI 1192

Query: 168  VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
             D    +        +       +  E+   +                L 
Sbjct: 1193 FDPFFTTKGVGKGTGLGLSICYGIVREHGGEITCVNHPEGQGATFFIRLP 1242


>gi|228964396|ref|ZP_04125510.1| hypothetical protein bthur0004_12450 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795253|gb|EEM42745.1| hypothetical protein bthur0004_12450 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 508

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDYMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504


>gi|229093684|ref|ZP_04224783.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
 gi|228689569|gb|EEL43377.1| hypothetical protein bcere0021_44080 [Bacillus cereus Rock3-42]
          Length = 571

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 350 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 409

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 410 QQGFKLSMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNTLKRVSVIGDPSRLQQIFINLM 469

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 470 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 528

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 529 GTGLGLSIVKHLVEAHHGTITVDSEVGKGTTFTVVLPK 566


>gi|149182829|ref|ZP_01861290.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
 gi|148849444|gb|EDL63633.1| phosphate regulon sensor protein [Bacillus sp. SG-1]
          Length = 576

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 72/219 (32%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L +  + D       + +I   S      +  +     
Sbjct: 352 FVANVSHELRTPITSIKGFSETLLDGAMNDKETLEMFLNIILRESDRLQSLITDLLDLSK 411

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 +L    T   + LI +  I +   +   ++  +           S    ++ +N
Sbjct: 412 MEKQGFQLNVHETDMKELLIEVITILEKKPEKKDIELVLHADEAVLAEVDSFRIKQVFIN 471

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           L   A    P GG+V++S++ S +  +  ++ NG      E    F +    +       
Sbjct: 472 LIGNAITYTPAGGEVSVSLKQSDSVIVIEVRDNGIGIEESEFPRIFERFYRVDKARSRDS 531

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  L   +   +  E   +     +  L K
Sbjct: 532 GGTGLGLAIVKHLIEAHGGTIGVESKVNEGTTFTVTLNK 570


>gi|313122883|ref|YP_004033142.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312279446|gb|ADQ60165.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 635

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 76/242 (31%), Gaps = 31/242 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++   + + D      S + H++ +P+ ++   +E L      +  I  + + + +  + 
Sbjct: 381 DVTEQIKNEDEQRQFVSNVSHELRTPLTSVRAYIEALNEGAWKDPEIAPQFLDVTQKETE 440

Query: 59  SAIIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             I                     +++         ++    + + +Q        +  +
Sbjct: 441 RMIRMVNDLLVLSRMDRGATKLEPEWVNFTDFVAHLLNRFDMIVEHDQGEAQSDTKEYVI 500

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +     + + +  +     +++ N+   A    P GG +T+ +  ++N+ + S+   G  
Sbjct: 501 KRDLGNQALWVEIDTDQMMRVIDNIMNNAIKYSPDGGTITVRLTQNQNQILLSISDQGLG 560

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  + H       
Sbjct: 561 IPRKDLGKIFDRFYRADKARSRAQGGTGLGLAIAKEIVTAHGGRIWADSREGHGSTFYIA 620

Query: 213 LE 214
           L 
Sbjct: 621 LP 622


>gi|15804594|ref|NP_290635.1| sensor protein ZraS [Escherichia coli O157:H7 EDL933]
 gi|12518935|gb|AAG59200.1|AE005632_1 sensor kinase for HydG, hydrogenase 3 activity [Escherichia coli
           O157:H7 str. EDL933]
          Length = 458

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 81/219 (36%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERA-- 116
               L+ ++       +VD    +    Q++ +D    + +++ +      ++  +    
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANCREIQLRFTANDTLPEIQADPDRL 350

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTAXZSGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +    ++      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASLEGKGARFTLWLP 448


>gi|228907577|ref|ZP_04071434.1| hypothetical protein bthur0013_17440 [Bacillus thuringiensis IBL
           200]
 gi|228852069|gb|EEM96866.1| hypothetical protein bthur0013_17440 [Bacillus thuringiensis IBL
           200]
          Length = 490

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59
           + +++   +        L S I HD+ +PI AI   ++ + E        +         
Sbjct: 250 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 309

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
            +  +  +         +D        E+V  +    D   ++    +   ++       
Sbjct: 310 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQNKGIAVRWDAQK 369

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160
                         +++ N+   +   + +             +     +K NG      
Sbjct: 370 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 429

Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +    +           +       +  ++   +  E        L+  L+K
Sbjct: 430 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 488


>gi|311278812|ref|YP_003941043.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Enterobacter cloacae SCF1]
 gi|308748007|gb|ADO47759.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Enterobacter cloacae SCF1]
          Length = 612

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 73/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     L  +  L  L  L + + H++ +P+ AI   ++++ +        +       
Sbjct: 377 RKETQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTTLPAHQEYLSVVLN 436

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKID 110
            I   +      L F R        V     +G+   +++   +            +   
Sbjct: 437 EIDSINKVIQQLLDFSRPRQSQWQQVQLNALIGEALILVQTSGVQARIDFNTELDADLPT 496

Query: 111 LSRER---AKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +R    ++LLN+ + A  ++  RG     + +++      +++ NG          +
Sbjct: 497 IVADRELLKQVLLNILINAVQAIGARGSIRIRTWRETATHLAIAIEDNGGGIDIA-LQKK 555

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +            + +L 
Sbjct: 556 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVTSTPGCGATFTLILP 603


>gi|228993315|ref|ZP_04153231.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
 gi|228766383|gb|EEM15026.1| hypothetical protein bpmyx0001_40470 [Bacillus pseudomycoides DSM
           12442]
          Length = 558

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +E+       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G     + L  +  + +       +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVEMKELLEEIKMVLENKSQDKEISLQVDVLRHVSVIGDPSRLKQIFINLV 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + ++     +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  E         +  L K
Sbjct: 516 GTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPK 553


>gi|20808059|ref|NP_623230.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516640|gb|AAM24834.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 456

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 24/227 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L     +     ++ + +I   +      +  
Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRSGAIENPEAREKFLDIIDFEAERLTRLIND 284

Query: 67  M------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +                      +    L  +E+  +D     KR         I     
Sbjct: 285 ILTLSEIENVKEGYPVEKIEMDKEIEDILYIMEKAAKDKSITLKRDLNCGNLTIIANRDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL          GG V +S +    + I  ++ NG      +K  ++ +     
Sbjct: 345 FHQMMINLIDNGIKYTQEGGFVKVSTRLEGEKIIIEVEDNGIGI-PKDKIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    +    V  +    K  +  E         +    +
Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKFTIRFNR 450


>gi|229160849|ref|ZP_04288839.1| hypothetical protein bcere0009_16380 [Bacillus cereus R309803]
 gi|228622586|gb|EEK79422.1| hypothetical protein bcere0009_16380 [Bacillus cereus R309803]
          Length = 483

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 63/239 (26%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59
           + +++   +        L S I HD+ +PI AI   ++ + E        +         
Sbjct: 243 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 302

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
            +  +  +         +D        E+V  +    D   ++    +   +        
Sbjct: 303 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGIVVRWDAQK 362

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160
                         +++ N+   +   + +             +     +K NG      
Sbjct: 363 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 422

Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +    +           +       +  ++   +  E        L+  L+K
Sbjct: 423 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 481


>gi|239825976|ref|YP_002948600.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
 gi|239806269|gb|ACS23334.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
          Length = 581

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 13/226 (5%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57
           + K   F  +S  L     L + I H+I +P+ AI   ++LL  E+ ++   + +I    
Sbjct: 341 LKKTEEFIRTSEKLSVAGQLAAGIAHEIRNPLTAIKGFIQLLQFELDVKKPYLHIIESEI 400

Query: 58  MSAI-------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                      +  K     F  +     L  +  + +       +    ++  +   I+
Sbjct: 401 QRIELILGELLVLAKPQATKFTKSDIGVLLQHVTTLLETQGILHNIQIITKIDPSLPLIE 460

Query: 111 LSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIV 168
                  ++ +N    A  ++  GG + I  Q       +      G      E+  +I 
Sbjct: 461 CDENGLKQVFINFLKNAMEAMKSGGHIFIEAQKKDEYSVLIRFIDEGCGI-PKEQLEKIG 519

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +       +  ++   +     ++    +   L 
Sbjct: 520 KPFFTTKEKGTGLGIMISKKIIEDHGGTMSIMSEENKGTTVEVTLP 565


>gi|229017928|ref|ZP_04174806.1| hypothetical protein bcere0030_24640 [Bacillus cereus AH1273]
 gi|229024149|ref|ZP_04180616.1| hypothetical protein bcere0029_24730 [Bacillus cereus AH1272]
 gi|228737145|gb|EEL87673.1| hypothetical protein bcere0029_24730 [Bacillus cereus AH1272]
 gi|228743353|gb|EEL93475.1| hypothetical protein bcere0030_24640 [Bacillus cereus AH1273]
          Length = 581

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 71/226 (31%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSS 57
            K       S  L A+  L + + H++ +P+  I   ++L  +++   E     ++    
Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQERYFDLMLSEIE 402

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110
              +I  +F+ +A     S +        + V+           +               
Sbjct: 403 RIEVILQEFLSIAKTDEISTEEKNIYQVFKNVVSLMNTKAIMTNIQVELFADSDELAIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + +++  I ++   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGKISIHMKEINEDGVIIAVVDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIVESHQGTISIMSDVGVGTTVTIFLPK 567


>gi|197118969|ref|YP_002139396.1| PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088329|gb|ACH39600.1| sensor histidine kinase, PAS domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 539

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 75/231 (32%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57
           M +       +  L A+  L +R+ H+I +P+ AI  S++L+      +++  +L  +  
Sbjct: 309 MKRLAAGLKRADRLAAVGELSARMAHEIRNPLAAISGSVQLVALRPWADEKDKRLFSIIL 368

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    +R    Y                   L  +         V    +V     
Sbjct: 369 RETDRLDGLLRDFLFYAKPTQPTKIPLKLRRVIADLCSLLSTDPRLRGVTIENRVPEELV 428

Query: 108 KIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +    + +++  NL + +  ++            +    K E   S++ +G+  +  + 
Sbjct: 429 VVFDKDQCSQVFWNLVVNSAEAIAGEGTIVIDACAASNGEKEEARISVRDSGSGMKQADV 488

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +      +    V  +   +  R++ +  +     ++  L 
Sbjct: 489 K-RVFEPFFTTKKGGTGLGLATVYRIVETHGGRMVVDSAEGAGTTVTLYLP 538


>gi|312127465|ref|YP_003992339.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777484|gb|ADQ06970.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 575

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 73/225 (32%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L +  I+D+      + +I +     +  +  
Sbjct: 343 ERIRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVAIKFLNIIEVEVERLVRLIND 402

Query: 67  MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     + ++ + ++ ++  +   +   V+V    E        
Sbjct: 403 LLYLSEIENAAMPILEEKVVVKEVVLEIIELLKIKAEKKNIQLDVKVQEGLEMNIYRDWL 462

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I +NL   A       GKV ++V+ S +  +  +   G      E   +I +      
Sbjct: 463 KQIFINLIDNAIVYNKENGKVWVTVEKSNSIVVIKVTDTGIGIPKKEI-ERIFERFYRVD 521

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  +      ++  E  +      +  + 
Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVKLYGGKVWVESQEGIGSEFTVTIP 566


>gi|298529632|ref|ZP_07017035.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511068|gb|EFI34971.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 400

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 29/233 (12%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----------------VM 50
               +    +L + + H++ +P+ AI+   E L       E                 ++
Sbjct: 163 QVEKMATIGMLAAGVAHEVNNPMAAINGFAEGLRRRIPRIEKSVDPELAQDFREYTDIIL 222

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
           +  +         L F R        ++    + +  ++++  +   K ++V    +   
Sbjct: 223 KECKRCQKIIQTLLTFSRPKHFSFSPINLNRVVNETLRLVDHSLRKRKGLKVKLDLQDGL 282

Query: 109 ---IDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   +  +++LNL + A  ++       +  S  + +NE    ++ +G     P+K
Sbjct: 283 PLINADESQLKQVILNLLVNAKDAIQDKGLITIKTSAFEHENEVCLCVEDDGCGI-DPDK 341

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +        I       +   +   +            +  L 
Sbjct: 342 MDKLFEPFFTTKPVGKGIGIGLASCYNIVESHGGEISVTSEPGKGSRFTVCLP 394


>gi|89100421|ref|ZP_01173284.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89084850|gb|EAR63988.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 412

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 12/225 (5%)

Query: 2   AKNICFNLS-SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52
            +     L  S  L     + + I H+I +P+ +I   ++LL   G  +        +  
Sbjct: 178 KEQADLLLQKSEKLALVGQMAAGIAHEIRNPLTSIKGFIQLLKAEGNREYADIAISELDR 237

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           I L     ++  K     +        +  +  + Q       V     +     +I   
Sbjct: 238 INLIVGEFLVLAKPAAAVYRVCDLKKLIQEVVVLIQPQCLIHNVQIITGLDLDESEIWCE 297

Query: 113 RER-AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  ++ +N+   +  ++P G      +           +K  G         T + + 
Sbjct: 298 ENQLKQVFINMIKNSAEAMPDGGTITIKAADRKDGHVAVMIKDEGTGIPPERINT-LGEP 356

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +       +   +   +      +   V   +L K
Sbjct: 357 FYTTKEKGTGLGLMTSFKIIENHSGLVKVSSEVNKGTVFEIILPK 401


>gi|222056453|ref|YP_002538815.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565742|gb|ACM21714.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 551

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRL 55
           K +   L   D L A+  L +R+ H+I +P+ +I  +++L+ +           + ++  
Sbjct: 310 KQMEAKLKRADRLAAVGELSARMAHEIRNPLASISGAVQLIAQSDATCAKDKQLLGIVLR 369

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +      ++        T               L  + +    F  +   + +    + 
Sbjct: 370 ETDRLNELIRDFLEYARPTPPAKIHLDLALLIQDLTSLLKADHRFTGISVDMHIPKRTKI 429

Query: 109 IDLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLAR 159
               ++  ++  NL + A  ++P                S     +     +  NG    
Sbjct: 430 DFDLQQCKQVFWNLLVNAAEAMPGGGEISVRAEVISDMASGISVGDLIKIEVIDNGMGMN 489

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    + +    +  +   +    V  +   +   +L +   D     +  L 
Sbjct: 490 PQDVKN-VFEPFFTTKANGTGLGLATVYRIIESHGGIILVDSKQDQGTRFTVFLP 543


>gi|196234735|ref|ZP_03133543.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196221203|gb|EDY15765.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 415

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 75/232 (32%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53
            ++    + S  L AL  L + + H+I +P+ ++H  L+L++            ++ + +
Sbjct: 170 RRSTEETIQSEKLTALTLLAAGVAHEIGNPLNSLHIHLQLMERKLRKVPAAARADLQKSL 229

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWT 105
            ++          ++   G          L ++          +  +    +  V+    
Sbjct: 230 DVAKEEITRLDSIVQQFLGAIRPARLEARLENVNALVQEAVAFLQPEIEDRNVLVEHELR 289

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +   +  +R ++    +     +  ++  GG + I                G     PE
Sbjct: 290 SDLPLVEVDRNQLKQAFYNVLKNSFQAMKSGGLLRIRTDMDDAFVKIRFADTGGGI-SPE 348

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++I +    +      +    V  +  E+   +     + H + L+  L 
Sbjct: 349 NMSKIFEPYFTTKASGSGLGLLIVRRIVREHGGEIDLASDEGHGLTLTIRLP 400


>gi|229029584|ref|ZP_04185663.1| hypothetical protein bcere0028_16730 [Bacillus cereus AH1271]
 gi|228731706|gb|EEL82609.1| hypothetical protein bcere0028_16730 [Bacillus cereus AH1271]
          Length = 483

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59
           + +++   +        L S I HD+ +PI AI   ++ + E        +         
Sbjct: 243 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 302

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
            +  +  +         +D        E+V  +    D   ++    +   ++       
Sbjct: 303 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGIAVRWDAQK 362

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160
                         +++ N+   +   + +             +     +K NG      
Sbjct: 363 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 422

Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +    +           +       +  ++   +  E        L+  L+K
Sbjct: 423 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 481


>gi|108803625|ref|YP_643562.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108764868|gb|ABG03750.1| PAS/PAC sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 584

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 22/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58
           +    L          S   H++ +P+  I +++ LL         +E+  ++L      
Sbjct: 344 SEYRALERAKSA--FVSDFSHELRTPLTTIQSAVGLLQRARERLDPLENRALELAEGELS 401

Query: 59  SAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEK 108
                ++ +       ++ Y+  +        +   +E       R  +           
Sbjct: 402 RIRAMVEELMTLAQMDSWQYSLQLAPAGLDRILRDAVEAVEPKALRFGIEINLYEAGVHL 461

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165
              +++  ++ LNL   A      G +V ++V +S  + +  +K  G      +    F 
Sbjct: 462 TCDAQKLYQVFLNLLDNAVKYSEEGSRVDVTVAESGEQAVVRVKDTGVGIPEKDLPHLFE 521

Query: 166 QIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +      +   +     +       +   +   +  E         +  L K
Sbjct: 522 RFYRVEKDRSRSTGGSGLGLAICKQIVEMHGGSISVESRLGEGSTFTVRLPK 573


>gi|218233885|ref|YP_002366117.1| sensor histidine kinase KinD [Bacillus cereus B4264]
 gi|218161842|gb|ACK61834.1| sensor histidine kinase KinD [Bacillus cereus B4264]
          Length = 498

 Score =  128 bits (322), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111
               +    +    T  ++    +  I   +   I  +  +                   
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFYLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494


>gi|225155782|ref|ZP_03724269.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224803434|gb|EEG21670.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 409

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 54/236 (22%), Gaps = 28/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSM 58
            +     +          + + H++ +P+  I    E L + G +    Q  R       
Sbjct: 169 RQKRLEAVRKE-----FVANVSHELRTPLSVIKGYAETLIDGGPDMPPAQRDRFLHIIRR 223

Query: 59  SAIIRLKFMRLAFGYTGSVDSLI---------------GLGDIEQVIEDFIAVDKRVQVS 103
                   +      +                       L +            +    +
Sbjct: 224 HTDRLNTLLEDLLTLSRLESPNTGLRREPGDLDRLVKTLLDEYRTRPAAARHTLQLTLGA 283

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             G     + +  ++  NL   A    P G ++ I+++   +E    +  NG      + 
Sbjct: 284 APGPLNFDALKLTQVFHNLLDNALKYTPPGSRIDIAIRPKGSEIEICVSDNGPGIPVADL 343

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +    V  +   +  R+  E            L 
Sbjct: 344 PHIFERFYRVDKGRSRETGGTGLGLSIVKHIVQLHGGRVWVESEPGRGASFHFTLP 399


>gi|229917024|ref|YP_002885670.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229468453|gb|ACQ70225.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 651

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 60/231 (25%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++I        L   L + + H++ +P+ +I    ELL     E    +  + +I   + 
Sbjct: 411 RDITQETEINRLKTELVATVSHELRTPLTSILGFSELLKSRQLENTKRERYLDMIASETK 470

Query: 59  SAIIRLKFMRLAFGYTGSVDSLI---------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +         +                 +E                 +    
Sbjct: 471 RLERLVSDLLDVQKMEAGMSVPDFKVESLYDLLSDLLEIHAGSTEHHFFHFDCDESLFVA 530

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++  N+   A    PRGG VT+ V    +     +   G      E   +I D
Sbjct: 531 GDPAQLRQVFSNILNNAIKYSPRGGNVTVDVTCEDDTIQIGITDEGLGL-SEEDAARIFD 589

Query: 170 GNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               S       I    +       +   +   +  +        +   L 
Sbjct: 590 KFYRSASEESKRIGGTGLGLAICKEIVQLHGGTISVQSQLGEGTTMIVELP 640


>gi|228999368|ref|ZP_04158947.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
 gi|228760313|gb|EEM09280.1| hypothetical protein bmyco0003_39230 [Bacillus mycoides Rock3-17]
          Length = 558

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +E+       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G     + L  +  + +       +  +V V      I       +I +NL 
Sbjct: 397 QQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQVDVLRHVSVIGDPSRLKQIFINLV 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + ++     +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  E         +  L K
Sbjct: 516 GTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPK 553


>gi|229006923|ref|ZP_04164553.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
 gi|228754323|gb|EEM03738.1| hypothetical protein bmyco0002_38240 [Bacillus mycoides Rock1-4]
          Length = 561

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 65/218 (29%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +E+       + +I   S      ++ +       
Sbjct: 340 ANVSHELKTPITSIKGFSETLLDGAMENQQFCEHFLNIILKESERMQGLIEDLLDLSKIE 399

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G     + L  +  + +       +  +V V      I       +I +NL 
Sbjct: 400 QQGFKLNMGTVEMKELLGEIKMVLENKSQDKEISLQVDVLRHVSVIGDPSRLKQIFINLV 459

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + ++     +   G      E   +I +              
Sbjct: 460 NNAIVYTPAGGTVSVELLEDEHNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 518

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  E         +  L K
Sbjct: 519 GTGLGLSIVKHLVEAHHGTVTVESEVGEGTTFTVALPK 556


>gi|228900015|ref|ZP_04064251.1| hypothetical protein bthur0014_12240 [Bacillus thuringiensis IBL
           4222]
 gi|228859629|gb|EEN04053.1| hypothetical protein bthur0014_12240 [Bacillus thuringiensis IBL
           4222]
          Length = 486

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482


>gi|327440829|dbj|BAK17194.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 592

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           ++         L +   + + H++ +PI  +    E + +          +++++I   S
Sbjct: 356 RDKTEETKLEKLKSDFIANVSHELRTPIAMLQGYSEAIIDGVVTTEEERIDMIRVIYDES 415

Query: 58  MSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +        +V   +     +   E  + +      S 
Sbjct: 416 QRMSRLVTDLLDLARMESGHMTLYKEEVPLVTVIERMTHKFDQTAKEKHVQLQIETDFSD 475

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       ++L NL   A    P  G VT+S+ + +N     +   G      +  
Sbjct: 476 ETLISIDEDRIEQVLTNLIDNAIRHTPADGSVTVSMINEQNYAKIQVSDTGQGIPQDDLP 535

Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +     +     +       +   +  R+  + ++      +  L 
Sbjct: 536 YVFERFYKADKARTRSKGGTGLGLAITKNIVEAHNGRISVDSVEQQGTTFTFYLP 590


>gi|319646280|ref|ZP_08000510.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|317392030|gb|EFV72827.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 736

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K +   L   D   +V  L + I H+I +P+ A+   ++LL      ++      + + 
Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSIQNEDHALYFNVITS 560

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSWTGE 107
                   +            +    +I ++++D +                        
Sbjct: 561 ELKRIESIITEFLILAKPQAIMYEEKNIVKIMQDTMDLLHAQANLDNVQMHLKCEDGIPL 620

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166
                 +  ++ +N+   A   +P GG V +S++   +   I SL   G      +K  +
Sbjct: 621 IYCEPNQLKQVFINILKNAIEVMPDGGNVYVSIKPKGDDHIIVSLADEGIGM-TEDKLKR 679

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +      +       +  E+K ++  E  +         L 
Sbjct: 680 LGEPFYTTKERGTGLGLMVSYKIIEEHKGKIEVESEEGRGTTFHLTLP 727


>gi|26250775|ref|NP_756815.1| sensor protein ZraS [Escherichia coli CFT073]
 gi|227885466|ref|ZP_04003271.1| sensor protein ZraS [Escherichia coli 83972]
 gi|300979678|ref|ZP_07174650.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301047739|ref|ZP_07194797.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|26111206|gb|AAN83389.1|AE016770_189 Sensor protein zraS [Escherichia coli CFT073]
 gi|227837540|gb|EEJ48006.1| sensor protein ZraS [Escherichia coli 83972]
 gi|300300384|gb|EFJ56769.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300409462|gb|EFJ93000.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|307556146|gb|ADN48921.1| sensor protein ZraS [Escherichia coli ABU 83972]
 gi|315294339|gb|EFU53690.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
          Length = 458

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|258510738|ref|YP_003184172.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477464|gb|ACV57783.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 420

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56
           M K +     +S++   A LC+ I H+I +P+      L+L  E     +   ++L    
Sbjct: 192 MRKKLQEFEKVSAL---AQLCAGIAHEIRNPLTTARGFLQLFAERCDDKDRGYLELTISE 248

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEK 108
                  L+             + + + +I + +  F+  +  +                
Sbjct: 249 LDRIRELLEDFMGLCRPDREEAAEVDMVEIARSVHRFLVPEASLCDIAFELNVPAHPIPA 308

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ 166
                +  ++L+NL   A  +        + +   + ++  +  +  NG      E   +
Sbjct: 309 AVRPAQIKQVLINLVQNALQACRGQAHAVVRLDVAEKEDRVLVQVVDNGCGI---EHMDR 365

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I      +      +  +    +   +   +           ++  + K
Sbjct: 366 IFRPFYTTKSTGTGLGLFVCKHIIESHGGSISVRSQVGAGTTVTVEIPK 414


>gi|157144823|ref|YP_001452142.1| sensory histidine kinase AtoS [Citrobacter koseri ATCC BAA-895]
 gi|157082028|gb|ABV11706.1| hypothetical protein CKO_00550 [Citrobacter koseri ATCC BAA-895]
          Length = 593

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K     L  +  L  L  L + + H++ +P+ AI   ++++ +        + + +   
Sbjct: 358 RKEAQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQINLPVHQEYLSVVLK 417

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
                 K ++    ++    S      I  +IE+ + + +   V                
Sbjct: 418 EIDSINKVIQQLLDFSRPRQSQWQQVSINTLIEEALILVQTSGVQARINFNTEFNAALPT 477

Query: 116 --------AKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++  RG     + + +      +++ NG          +
Sbjct: 478 IVADRELLKQVLLNMLINAVQAIGARGEIRIRTWRYTTTHLAIAIEDNGCGIDVA-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +       + +L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHQGDIYVTSMPGCGATFTLILP 584


>gi|149922416|ref|ZP_01910849.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149816696|gb|EDM76187.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 495

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 63/224 (28%), Gaps = 13/224 (5%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           +   +     L AL  + + I H++ +P+ ++    +LL+E     EV +  R      I
Sbjct: 267 SERRSAQQRQLAALGEMSAVIAHELRNPLASLKGHAQLLEERLDRLEVDERTRRKVARVI 326

Query: 62  IRLKFMRL------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE- 114
              + +         F   G ++      +             RV+V           + 
Sbjct: 327 HEAQRLEELSSGLLTFVRLGEIEPSSVALETLVSEALAGLDAARVEVDLRRAPERWPLDA 386

Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
               ++L N+      +              +    +F ++  G      +   +I +  
Sbjct: 387 GRMQQVLGNIIDNGLQASAEDQGRVDVRVFVERGRCVFEVRDRGPGVPL-DARERIFEPF 445

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +      +       +   +   +      +   V    + +
Sbjct: 446 HTTRTRGTGLGLAVSRRIVELHGGTIGVTDHPEGGAVFRVAIPR 489


>gi|229141313|ref|ZP_04269851.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
 gi|228642094|gb|EEK98387.1| hypothetical protein bcere0013_44060 [Bacillus cereus BDRD-ST26]
          Length = 558

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 397 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPK 553


>gi|222098049|ref|YP_002532106.1| phosphate regulon sensor protein [Bacillus cereus Q1]
 gi|221242107|gb|ACM14817.1| phosphate regulon sensor protein [Bacillus cereus Q1]
          Length = 587

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPK 582


>gi|197334981|ref|YP_002156203.1| C4-dicarboxylate transport sensor protein DctB [Vibrio fischeri
           MJ11]
 gi|197316471|gb|ACH65918.1| C4-dicarboxylate transport sensor protein DctB [Vibrio fischeri
           MJ11]
          Length = 680

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + S  L +L  L + I H+I +P   I  + EL+     +E  +  E ++ I
Sbjct: 434 LKQAQDKLVMSEKLASLGELTAGIAHEINNPTAVILGNAELIKYELGEEAHVIAEELETI 493

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTG 106
                      + +       G  D +        +              D  V+  +  
Sbjct: 494 MEQIDRIRNITRSLLQYSRQGGIQDEVTWQYINPIIEESVTLVRTGAHKRDIEVEFDFEQ 553

Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                       ++L+NL M    ++           T   +  +   I  ++  G    
Sbjct: 554 PPRVEVNRHHLLQVLVNLQMNGIHAMNSKGKLIIRSRTWCHEGVEFGAIIEVEDFGCGI- 612

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  +I D    +  D   +       L  +    +          V +  L 
Sbjct: 613 AGEQLNRIFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIKVRSQLGKGTVFTIYLP 667


>gi|206977124|ref|ZP_03238023.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
 gi|206744609|gb|EDZ56017.1| sensory box histidine kinase PhoR [Bacillus cereus H3081.97]
          Length = 587

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPK 582


>gi|217962067|ref|YP_002340637.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
 gi|217064897|gb|ACJ79147.1| sensory box histidine kinase PhoR [Bacillus cereus AH187]
          Length = 587

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 425

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 426 QQGFKLNMGTVDMKGLLEDIHMVLDNKAGEKEISLQVNALKRVSVIGDPSRLQQIFINLM 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 486 NNAIVYTPAGGVVSVELVEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGTITVDSEIGEGTTFTVVLPK 582


>gi|228920146|ref|ZP_04083495.1| hypothetical protein bthur0011_11630 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839602|gb|EEM84894.1| hypothetical protein bthur0011_11630 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 486

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   I             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEIALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQITDTGKGI-PQHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482


>gi|253701764|ref|YP_003022953.1| histidine kinase [Geobacter sp. M21]
 gi|251776614|gb|ACT19195.1| histidine kinase [Geobacter sp. M21]
          Length = 369

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 68/224 (30%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMS 59
                 +  L AL  L + + H+I +P+ +I  + E+L E G     DE ++++   S  
Sbjct: 144 EEQLRRAERLSALGELSAILAHEIRNPLASIRGTAEILKEDGAAASRDEFLEILVKESDR 203

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKID----LS 112
               ++          +V     +      I       A  + V++ +T  ++       
Sbjct: 204 LNRVVEDFLRMARPEPAVKKECDINYELANIVTLLSAQARGEEVELRFTPGEVPTLSADP 263

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIVDG 170
            +  +  +N+ +    +    G+V ++                NG      E   +I + 
Sbjct: 264 EKLRQAFMNVILNGIQASAPRGRVQVTTSYDLQSRSIEIRFSDNGPGI-AAEAIGKIFEP 322

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   +   L  E            L 
Sbjct: 323 FFTTKGSGTGLGLSITKKILEGHGGTLEVESTPGEGACFRVRLP 366


>gi|229126751|ref|ZP_04255763.1| hypothetical protein bcere0015_12080 [Bacillus cereus BDRD-Cer4]
 gi|228656691|gb|EEL12517.1| hypothetical protein bcere0015_12080 [Bacillus cereus BDRD-Cer4]
          Length = 508

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 58/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +                             
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIAFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504


>gi|30019486|ref|NP_831117.1| sporulation kinase D [Bacillus cereus ATCC 14579]
 gi|29895030|gb|AAP08318.1| Sporulation kinase D [Bacillus cereus ATCC 14579]
          Length = 498

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 58/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +                             
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIAFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494


>gi|330445936|ref|ZP_08309588.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490127|dbj|GAA04085.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 664

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLI 53
           + +     + S  L AL  L + I H+I +P+G I  ++EL+     +      E +  I
Sbjct: 415 LNQARSKLVVSEKLAALGELTAGIAHEINNPLGVILGNVELIQFELGDNTVQVQEELDAI 474

Query: 54  RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +     + V+  V +  
Sbjct: 475 HAQIDRIRNITRSLLQYSRQGGVQNEVTWHHLNQIVEESLTLVRSGTKKMDVEFDVDLQA 534

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIFSLKINGNLA 158
                    +  ++L+NL M    ++          +  I   +     I  +  +G   
Sbjct: 535 KCSVEVNRHQLLQVLVNLQMNGIHAMDDQGRLSIKTQDWIDDSNQVLGAIVKIVDHGCGI 594

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E   +I D    +      +       L  +    +  +         +  L
Sbjct: 595 -PKENLERIFDPFFTTRRSGTGLGLSVSQSLIEDIGGEIEVDSEVGKGTTFTVYL 648


>gi|212639786|ref|YP_002316306.1| signal transduction histidine kinase, nitrogen specific, contains
           PAS/PAC domain [Anoxybacillus flavithermus WK1]
 gi|212561266|gb|ACJ34321.1| Signal transduction histidine kinase, nitrogen specific, contains
           PAS/PAC domain [Anoxybacillus flavithermus WK1]
          Length = 418

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 72/220 (32%), Gaps = 11/220 (5%)

Query: 5   ICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
               L    L  +  L + I H+I +P+ +I   L+++      +      ++  I   +
Sbjct: 193 EQLLLKKEKLSVIGELAAGIAHEIRNPLTSIKGFLQMMKETKEVDERFVQIMLDEIERVN 252

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTGEKIDLSRE 114
                 L   +        +     L  +  +         V  + +   +        E
Sbjct: 253 QIVSHLLVLAKPQMKSYKPLALHDVLEYVIGLFTYEAILQNVQLKYEPRTSAVVYGDKNE 312

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             ++ +N+   A  ++PRGG +TIS +D  +     ++  G      E+   I +     
Sbjct: 313 LIQVFVNVVKNALEAMPRGGVLTISAKDEADCVYVIVEDTGKGI-ERERLKHIGEPFYTL 371

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     + + HE+K  +  E        +  +L 
Sbjct: 372 KEKGMGLGLTTSMKIIHEHKGTMQLESKVGKGTRVQIMLP 411


>gi|6687470|emb|CAB64973.1| VicK protein [Enterococcus faecalis]
          Length = 611

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   E+           ++            L   R
Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 440

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
           +  G T          + +  + D   ++ +    + ++   +T   + +  +     ++
Sbjct: 441 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLWVELDTDKVIQV 500

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           L N+   A    P GG +T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 501 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 560

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 561 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 601


>gi|29375769|ref|NP_814923.1| sensory box histidine kinase VicK [Enterococcus faecalis V583]
 gi|227552978|ref|ZP_03983027.1| histidine kinase [Enterococcus faecalis HH22]
 gi|257419020|ref|ZP_05596014.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis T11]
 gi|29343230|gb|AAO80993.1| sensory box histidine kinase VicK [Enterococcus faecalis V583]
 gi|227177887|gb|EEI58859.1| histidine kinase [Enterococcus faecalis HH22]
 gi|257160848|gb|EEU90808.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis T11]
 gi|315575747|gb|EFU87938.1| PAS domain S-box [Enterococcus faecalis TX0309B]
 gi|315579809|gb|EFU92000.1| PAS domain S-box [Enterococcus faecalis TX0309A]
          Length = 609

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   E+           ++            L   R
Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
           +  G T          + +  + D   ++ +    + ++   +T   + +  +     ++
Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKICREFTKRDLWVELDTDKVIQV 498

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           L N+   A    P GG +T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599


>gi|328911411|gb|AEB63007.1| histidine kinase phosphorylating Spo0A [Bacillus amyloliquefaciens
           LL3]
          Length = 499

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           +        ++L+  L +   H+I +P+  I   ++LL +      +     +I      
Sbjct: 273 ERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKTEEDQLYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110
               +    +    T     +  L DI   I   I          V+  + V+   +   
Sbjct: 333 INQIVSEFLVLGKPTAERLEVNSLQDILDEIMPIIYSEGNLYNVEVNVEILVNRPLKVNC 392

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +++LN+   A  S+  GG+++I ++   ++ +  +  NG      +    I   
Sbjct: 393 TKDHIKQVILNVAKNALESMQEGGRLSIYLEARDHKAVIKVADNGMGI-SEDMLEHIFLP 451

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V S      +       +       +  +   D    ++  L 
Sbjct: 452 FVTSKEKGTGLGLVVCKRIVLMYGGSIDIQSEVDKGTEVTITLP 495


>gi|328553738|gb|AEB24230.1| histidine kinase phosphorylating Spo0A [Bacillus amyloliquefaciens
           TA208]
          Length = 499

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           +        ++L+  L +   H+I +P+  I   ++LL +      +     +I      
Sbjct: 273 ERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKTEEDQLYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110
               +    +    T     +  L DI   I   I          V+  + V+   +   
Sbjct: 333 INQIVSEFLVLGKPTAERLEVNSLQDILDEIMPIIYSEGNLYNVEVNVEILVNRPLKVNC 392

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +++LN+   A  S+  GG+++I ++   ++ +  +  NG      +    I   
Sbjct: 393 TKDHIKQVILNVAKNALESMQEGGRLSIYLEARDHKAVIKVADNGMGI-SEDMLEHIFLP 451

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V S      +       +       +  +   D    ++  L 
Sbjct: 452 FVTSKEKGTGLGLVVCKRIVLMYGGSIDIQSEVDKGTEVTITLP 495


>gi|326939058|gb|AEA14954.1| sporulation kinase D [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 498

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494


>gi|308173336|ref|YP_003920041.1| histidine kinase phosphorylating Spo0A [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606200|emb|CBI42571.1| histidine kinase phosphorylating Spo0A [Bacillus amyloliquefaciens
           DSM 7]
          Length = 499

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           +        ++L+  L +   H+I +P+  I   ++LL +      +     +I      
Sbjct: 273 ERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKTEEDQLYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110
               +    +    T     +  L DI   I   I          V+  + V+   +   
Sbjct: 333 INQIVSEFLVLGKPTAERLEVNSLQDILDEIMPIIYSEGNLYNVEVNVEILVNRPLKVNC 392

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +++LN+   A  S+  GG+++I ++   ++ +  +  NG      +    I   
Sbjct: 393 TKDHIKQVILNVAKNALESMQEGGRLSIYLEARDHKAVIKVADNGMGI-SEDMLEHIFLP 451

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V S      +       +       +  +   D    ++  L 
Sbjct: 452 FVTSKEKGTGLGLVVCKRIVLMYGGSIDIQSEVDKGTEVTITLP 495


>gi|228938549|ref|ZP_04101157.1| hypothetical protein bthur0008_12140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228821147|gb|EEM67164.1| hypothetical protein bthur0008_12140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 508

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504


>gi|52079902|ref|YP_078693.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52785274|ref|YP_091103.1| KinE [Bacillus licheniformis ATCC 14580]
 gi|52003113|gb|AAU23055.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347776|gb|AAU40410.1| KinE [Bacillus licheniformis ATCC 14580]
          Length = 736

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K +   L   D   +V  L + I H+I +P+ A+   ++LL      ++      + + 
Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSIQNEDHALYFNVITS 560

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSWTGE 107
                   +            +    +I ++++D +                        
Sbjct: 561 ELKRIESIITEFLILAKPQAIMYEEKNIVKIMQDTMDLLHAQANLDNVQMHLKCEDGIPL 620

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166
                 +  ++ +N+   A   +P GG V +S++   +   I SL   G      +K  +
Sbjct: 621 IYCEPNQLKQVFINILKNAIEVMPDGGNVYVSIKPKGDDHIIVSLADEGIGM-TEDKLKR 679

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +      +       +  E+K ++  E  +         L 
Sbjct: 680 LGEPFYTTKERGTGLGLMVSYKIIEEHKGKIEVESEEGRGTTFHLTLP 727


>gi|325496735|gb|EGC94594.1| sensory histidine kinase AtoS [Escherichia fergusonii ECD227]
          Length = 608

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 72/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     L  +  L  L  L + + H++ +P+ AI   ++++ +   + E  +       
Sbjct: 373 RKESQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLN 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L F R        V     + +   + +      +   ++     +  
Sbjct: 433 EIDSINKVIQQLLDFSRPRKSQWQQVYLNALIEETLILAQTSGVQARIDFITELDPSLTA 492

Query: 112 SRERA----KILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++LN+ + A  +   RG     +   + N+   +++ NG          +
Sbjct: 493 IVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAITIEDNGCGIDLS-LQRK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +       + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGCGATFTLILP 599


>gi|229173301|ref|ZP_04300845.1| hypothetical protein bcere0006_24020 [Bacillus cereus MM3]
 gi|228609995|gb|EEK67273.1| hypothetical protein bcere0006_24020 [Bacillus cereus MM3]
          Length = 587

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 64/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     + +          V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEQKNIYQIYNNVVSLMNTKAIMTNIQVELYADNKDISIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + +    I  +   G      ++  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGKITIHIKEINDEGVIIHVIDEGIGI-PEDRIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               S      I       +   ++  +           ++  L K
Sbjct: 522 PFYSSKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567


>gi|229032232|ref|ZP_04188205.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
 gi|228729012|gb|EEL80015.1| hypothetical protein bcere0028_42740 [Bacillus cereus AH1271]
          Length = 558

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 337 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 396

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 397 QQGFKLSMGTVDMKGLLEDIHMVLDNKTGEKEISLQVNALKGVSVIGDPSRLKQIFINLI 456

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 457 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 515

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 516 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 553


>gi|332982073|ref|YP_004463514.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699751|gb|AEE96692.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 485

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 70/227 (30%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55
           AK       S  L AL  L + I H++ +P+  +  +++L+     +     + + +I+ 
Sbjct: 246 AKLEEQLQRSERLAALGQLVAGIAHEMRNPMAIVKATVQLMQKQYKDSSEMQQYLDVIKE 305

Query: 56  SSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   +K +              +        +      ++ +              
Sbjct: 306 QVDRQDKIVKELLDFSRPSKSLWEDISLVELLKSVITFTRPYMDQYHIELSEKYQIDLPL 365

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       ++ +N+ + A  S+P+GG++ ISV   +     S    G+     +    I
Sbjct: 366 IIADGERLKQVFVNIIINAVQSMPKGGQLMISVYSDEQNVYASFADTGSGIADEDI-ENI 424

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +   +   +      D   + +  + 
Sbjct: 425 FNPFYTTKYSGTGLGLAISHNIIAMHGGTIAVTRSKDGGSIFTVSIP 471


>gi|325499265|gb|EGC97124.1| sensor protein ZraS [Escherichia fergusonii ECD227]
          Length = 458

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ QL+   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQLMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESSAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448


>gi|322420000|ref|YP_004199223.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
 gi|320126387|gb|ADW13947.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
          Length = 541

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 76/232 (32%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57
           M +       +  L A+  L +R+ H+I +P+ AI  S++L+     ++++  +L  +  
Sbjct: 310 MKRMAAELKRADRLAAVGELSARMAHEIRNPLAAISGSVQLVALRPWVDEKDQRLFSIIL 369

Query: 58  MSAIIRLKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    +R    Y                +  L  +         V+   QV     
Sbjct: 370 RETDRLDGLLRDFLFYAKPNQPTKVPLNLRRVITDLCALLATDPRLERVEIDNQVPDDLV 429

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPE 162
                 + +++  NL +    ++   G + I      V   ++E   S++ NG+     +
Sbjct: 430 VQFDKDQCSQVFWNLVVNGAEAITVDGCICIDATLTRVNGGRSEVRISVRDNGSGMSQAD 489

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +      +    V  +   N  R+           ++  L 
Sbjct: 490 VK-RVFEPFFTTKKGGTGLGLATVYRIVETNGGRMSINSTQGKGTTVTLHLP 540


>gi|168698335|ref|ZP_02730612.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 480

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 74/218 (33%), Gaps = 14/218 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSA 60
            S  L AL  L + + H++ +P+ AI ++++L +              V+  +   +   
Sbjct: 256 KSEHLAALGRLLAGVAHEVRNPLTAIRSTVQLWERLPAAARTPESLAAVVGSVDRINELV 315

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLS---RERA 116
              L F R        VD      +  +++     A+   ++         +    +   
Sbjct: 316 GRLLLFARAGHEARRPVDLNAVTAETLELVRARADALGVALEPDLAPGLPPVPGAAQAVG 375

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           +++LNL   A  ++P GG++T   + +      ++   G     PE   +  +    +  
Sbjct: 376 QVVLNLVTNALQAMPAGGRLTCRTRATGGRVELAVTDTGPGV-PPEARDRAFEPFFTTRA 434

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +       +A ++   +  +            L 
Sbjct: 435 DGTGLGLALCREVARQHGGDVTLDPPGGAGATFRLTLP 472


>gi|52081411|ref|YP_080202.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52786787|ref|YP_092616.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|319647319|ref|ZP_08001541.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52004622|gb|AAU24564.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52349289|gb|AAU41923.1| PhoR [Bacillus licheniformis ATCC 14580]
 gi|317390666|gb|EFV71471.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 581

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 69/238 (28%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSM 58
           M +         ++     + + H++ +PI +I    E L +  +   + ++Q + +   
Sbjct: 346 MTERKQL----EEMRKDFVANVSHELKTPITSIKGFTETLLDGAMNERETLLQFLSIILK 401

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVS 103
            +      ++     +        L      I + +A  + +               +  
Sbjct: 402 ESSRLQTLIQDLLDLSKIEQQNFTLNIQNCNIGEILAEIEMLLKNKAEEKGITLTLEKPD 461

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +I LNL   A    P  G VTIS    ++     ++  G   +  E 
Sbjct: 462 KPAVASGDPHRLKQIFLNLVNNALTYTPEDGSVTISADVLEDAVQVKVRDTGIGIKQSEI 521

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +                 +    V  L   ++  +  E         +  L++
Sbjct: 522 P-RIFERFYRIDKDRSRNSGGTGLGLAIVKHLVEAHQGEIDVESERGKGTEFTVRLKR 578


>gi|42518152|ref|NP_964082.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|268318622|ref|YP_003292278.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|41582436|gb|AAS08048.1| two-component regulatory system histidine kinase [Lactobacillus
           johnsonii NCC 533]
 gi|262396997|emb|CAX66011.1| two-component system sensor histidine kinase [Lactobacillus
           johnsonii FI9785]
 gi|329666464|gb|AEB92412.1| two-component system histidine kinase [Lactobacillus johnsonii DPC
           6026]
          Length = 616

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 68/242 (28%), Gaps = 34/242 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +                S + H++ +P+ ++   +E L      +  I  + + +I+  
Sbjct: 366 QQQKNEREQQQ-----FVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQFLHVIQDE 420

Query: 57  SMSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   I  +  +                 +      +         ++   +        +
Sbjct: 421 TERMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKTHKKKYSI 480

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +  +  + + +  +     +++ N+   A    P GG +T+ +  ++   I S+   G  
Sbjct: 481 KREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLG 540

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  +         
Sbjct: 541 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYIS 600

Query: 213 LE 214
           L 
Sbjct: 601 LP 602


>gi|281181067|dbj|BAI57397.1| two-component sensor kinase [Escherichia coli SE15]
          Length = 458

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 71/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++   G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGLHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLP 448


>gi|253573897|ref|ZP_04851239.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251846374|gb|EES74380.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 611

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 57/232 (24%), Gaps = 28/232 (12%)

Query: 10  SSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSS 57
               L A      + + H++ +P+  I +  E L++  +ED  +                
Sbjct: 372 EQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGAMEDPELGPRFVSVIQSQTERMI 431

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEKI 109
                 L   R              + ++           +++          +      
Sbjct: 432 RLVTDLLHLSRFDSHEAELRKQPTNVMEMLEDVVDRFSFQMQEKEIKPTLFIANDVDTAW 491

Query: 110 DLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               +  ++L NL   A    P G      +      +   S++  G      +   +I 
Sbjct: 492 IDRDQIDQVLDNLISNAMKYTPEGGAIALEARLTEDRQLAISVQDTGIGIPKKDL-DRIF 550

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +    +       +   +   +  +        ++  L 
Sbjct: 551 ERFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTISLQSELGKGTKVTFTLP 602


>gi|300362619|ref|ZP_07058795.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
 gi|300353610|gb|EFJ69482.1| sensor histidine kinase [Lactobacillus gasseri JV-V03]
          Length = 616

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 68/242 (28%), Gaps = 34/242 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +                S + H++ +P+ ++   +E L      +  I  + + +I+  
Sbjct: 366 QQQKNEREQQQ-----FVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQFLHVIQDE 420

Query: 57  SMSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   I  +  +                 +      +         ++   +        +
Sbjct: 421 TERMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTI 480

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +  +  + + +  +     +++ N+   A    P GG +T+ +  ++   I S+   G  
Sbjct: 481 KREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLG 540

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  +         
Sbjct: 541 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYIS 600

Query: 213 LE 214
           L 
Sbjct: 601 LP 602


>gi|157157582|ref|YP_001465499.1| sensor protein ZraS [Escherichia coli E24377A]
 gi|300925873|ref|ZP_07141716.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|301325712|ref|ZP_07219171.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|157079612|gb|ABV19320.1| sensor histidine kinase ZraS [Escherichia coli E24377A]
 gi|300418063|gb|EFK01374.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300847501|gb|EFK75261.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
          Length = 458

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKERLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++V +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLP 448


>gi|219667721|ref|YP_002458156.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537981|gb|ACL19720.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 352

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +N+  +L   +        L + I HD+ +P+ +I   +E L +   + E +      
Sbjct: 106 MRQNLKASLEQQNHLNHSRQELIASISHDLRTPLSSIRGYVEGLPKAVHDPEKLNRYLSV 165

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------- 106
             +    L  +         +D     G         +       V              
Sbjct: 166 LKNKTALLDTLIERLFEYSQLDMDDSQGAFCLWDAKEMLESILAPVELEFADQLVQLLLA 225

Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                        + A++  NL   A   L   G + I+ +    +   S+  +G     
Sbjct: 226 RPFPSVPIEANPDQIAQVFDNLISNARRYLGEKGTIAIAAKVEGADLHISVTDDGTGIAP 285

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +                 +     +       +   +   +  E         S  L 
Sbjct: 286 EDLPHVFDQFYRAEKSRSRSFGGAGLGLAICQKIIENHGGEIWAESEVGVGTRFSLRLP 344


>gi|323963778|gb|EGB59277.1| hsp90-like protein [Escherichia coli M863]
 gi|327250476|gb|EGE62186.1| sensor protein zraS [Escherichia coli STEC_7v]
          Length = 458

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        +        
Sbjct: 291 VSELLELVKPTHLALKAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPKIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      ++  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESSAGVKINVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448


>gi|59712007|ref|YP_204783.1| sensor histidine kinase [Vibrio fischeri ES114]
 gi|59480108|gb|AAW85895.1| sensor histidine kinase [Vibrio fischeri ES114]
          Length = 680

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + S  L +L  L + I H+I +P   I  + EL+     +E  +  E ++ I
Sbjct: 434 LKQAQDKLVMSEKLASLGELTAGIAHEINNPTAVILGNAELIKYELGEEAHVIAEELETI 493

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTG 106
                      + +       G  D +        +              D  V+  +  
Sbjct: 494 MEQIDRIRNITRSLLQYSRQGGIQDEVTWQYINPIIEESVTLVRTGAHKRDIEVEFDFEQ 553

Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                       ++L+NL M    ++           T   +  +   I  ++  G    
Sbjct: 554 PPRVEVNRHHLLQVLVNLQMNGIHAMNSKGKLIIRSRTWCHEGVEFGAIIEVEDFGCGI- 612

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  +I D    +  D   +       L  +    +          V +  L 
Sbjct: 613 AGEQLNRIFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIKVRSQLGKGTVFTIYLP 667


>gi|329765712|ref|ZP_08257281.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137778|gb|EGG42045.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 356

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 77/224 (34%), Gaps = 10/224 (4%)

Query: 1   MAKN-ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54
           M K          +++  L  R+ HD+ +P+  I NS++L+              +  I 
Sbjct: 132 MKKEFKNLKRIRQEIMGELSIRVAHDLKNPLNVIKNSVQLIQFRKEPSTENYSNTLTRIE 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            + +    ++  +               L  I + + + + V +   VS   + I ++ +
Sbjct: 192 HAVIRMDHQINEVLEFVNPLPLDLQQNSLKKIFENVINEMPVPEEFTVSIPTKDIMINCD 251

Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           + KI + L      A  ++   G + I+  ++++     +K  G      +   +I D  
Sbjct: 252 QRKIEIILRNLVLNAIQAMGEKGSIIITTNETESHVKILVKDTGPGI-PHKLRFKIFDPL 310

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +      +       +  ++   +  E   +     +  L K
Sbjct: 311 FTTRQIGTGLGLPICKTVIEQHGGSISFETELEKGTTFTISLPK 354


>gi|162454529|ref|YP_001616896.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161165111|emb|CAN96416.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 494

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55
            +       +  L AL  L + + H+I +P+G+I  S+ELL         + ++ ++I  
Sbjct: 244 EQATARAEQAERLAALGRLAAGLAHEIRNPLGSIAGSIELLRTGGTLSDEDRKLCEIIER 303

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            +      +  M             + L        V+         V+V + G      
Sbjct: 304 ETARLNDLVGDMLDLSRPRVPTLEGVDLSATARDVVVLAGRSGRGSDVEVRFDGPPSAPV 363

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  +++ NL   A  +   G  VT+ +    +  +  ++  G       +  ++ 
Sbjct: 364 TADAAQMRQVVWNLVRNAIQASSAGAVVTVRLWRDPSAWLLEIRDQGRGIPAGAR-DRLF 422

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      I    V  +  ++   +  +  +         + 
Sbjct: 423 DAFFTTRTHGMGIGLAVVKRILDDHGFAIEVDSREGEGTAFRVRVP 468


>gi|228957705|ref|ZP_04119450.1| hypothetical protein bthur0005_12210 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229108890|ref|ZP_04238494.1| hypothetical protein bcere0018_11660 [Bacillus cereus Rock1-15]
 gi|228674546|gb|EEL29786.1| hypothetical protein bcere0018_11660 [Bacillus cereus Rock1-15]
 gi|228801977|gb|EEM48849.1| hypothetical protein bthur0005_12210 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 508

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504


>gi|320665902|gb|EFX32933.1| sensor protein ZraS [Escherichia coli O157:H7 str. LSU-61]
          Length = 458

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 81/219 (36%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERA-- 116
               L+ ++       +VD    +    Q++ +D    + +++ +      ++  +    
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANCREIQLRFTANDTLPEIQADPDRL 350

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +    ++      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASLEGKGARFTLWLP 448


>gi|15834180|ref|NP_312953.1| sensor protein ZraS [Escherichia coli O157:H7 str. Sakai]
 gi|168752031|ref|ZP_02777053.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4113]
 gi|168758600|ref|ZP_02783607.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4401]
 gi|168764584|ref|ZP_02789591.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4501]
 gi|168771476|ref|ZP_02796483.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4486]
 gi|168777383|ref|ZP_02802390.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4196]
 gi|168780389|ref|ZP_02805396.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4076]
 gi|168790364|ref|ZP_02815371.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC869]
 gi|168798362|ref|ZP_02823369.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC508]
 gi|195939629|ref|ZP_03085011.1| sensor protein ZraS [Escherichia coli O157:H7 str. EC4024]
 gi|208805634|ref|ZP_03247971.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4206]
 gi|208813157|ref|ZP_03254486.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4045]
 gi|208819722|ref|ZP_03260042.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4042]
 gi|209397343|ref|YP_002273520.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4115]
 gi|217326637|ref|ZP_03442721.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str.
           TW14588]
 gi|254796001|ref|YP_003080838.1| sensor protein ZraS [Escherichia coli O157:H7 str. TW14359]
 gi|261227285|ref|ZP_05941566.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257032|ref|ZP_05949565.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli O157:H7 str. FRIK966]
 gi|291285418|ref|YP_003502236.1| sensor protein ZraS [Escherichia coli O55:H7 str. CB9615]
 gi|20140982|sp|Q8X614|ZRAS_ECO57 RecName: Full=Sensor protein zraS
 gi|13364402|dbj|BAB38349.1| sensor kinase HydH [Escherichia coli O157:H7 str. Sakai]
 gi|187767345|gb|EDU31189.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4196]
 gi|188014019|gb|EDU52141.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4113]
 gi|189001698|gb|EDU70684.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4076]
 gi|189354607|gb|EDU73026.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4401]
 gi|189359762|gb|EDU78181.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4486]
 gi|189365466|gb|EDU83882.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4501]
 gi|189370181|gb|EDU88597.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC869]
 gi|189379121|gb|EDU97537.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC508]
 gi|208725435|gb|EDZ75036.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4206]
 gi|208734434|gb|EDZ83121.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4045]
 gi|208739845|gb|EDZ87527.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4042]
 gi|209158743|gb|ACI36176.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str. EC4115]
 gi|209751648|gb|ACI74131.1| sensor kinase HydH [Escherichia coli]
 gi|209751650|gb|ACI74132.1| sensor kinase HydH [Escherichia coli]
 gi|209751652|gb|ACI74133.1| sensor kinase HydH [Escherichia coli]
 gi|209751654|gb|ACI74134.1| sensor kinase HydH [Escherichia coli]
 gi|209751656|gb|ACI74135.1| sensor kinase HydH [Escherichia coli]
 gi|217322858|gb|EEC31282.1| sensor histidine kinase ZraS [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595401|gb|ACT74762.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia coli O157:H7 str. TW14359]
 gi|290765291|gb|ADD59252.1| sensor protein ZraS [Escherichia coli O55:H7 str. CB9615]
 gi|320190899|gb|EFW65549.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Escherichia coli O157:H7 str. EC1212]
 gi|320639094|gb|EFX08734.1| sensor protein ZraS [Escherichia coli O157:H7 str. G5101]
 gi|320644488|gb|EFX13551.1| sensor protein ZraS [Escherichia coli O157:H- str. 493-89]
 gi|320649807|gb|EFX18328.1| sensor protein ZraS [Escherichia coli O157:H- str. H 2687]
 gi|320655140|gb|EFX23096.1| sensor protein ZraS [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660784|gb|EFX28238.1| sensor protein ZraS [Escherichia coli O55:H7 str. USDA 5905]
 gi|326347145|gb|EGD70875.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Escherichia coli O157:H7 str. 1125]
 gi|326347604|gb|EGD71326.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Escherichia coli O157:H7 str. 1044]
          Length = 458

 Score =  128 bits (321), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 81/219 (36%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERA-- 116
               L+ ++       +VD    +    Q++ +D    + +++ +      ++  +    
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANCREIQLRFTANDTLPEIQADPDRL 350

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +    ++      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVASLEGKGARFTLWLP 448


>gi|148263898|ref|YP_001230604.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397398|gb|ABQ26031.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 832

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRL 55
            +     +    LV+L  L + I H+I +P+  I   L+ L +          +M     
Sbjct: 604 EQMREEMIRMDRLVSLGKLSAGIAHEIRNPLTGISLLLDDLHDRPAVDSESQAMMGKALA 663

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------VSWTGEK 108
                   +  +        +      +  + Q        +   Q       +      
Sbjct: 664 EIERVERLISSLLNYASPPKAEFREGDINRVVQDTLLLFKKECEKQGVELVSSLQEIPSF 723

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              + +  + LLN+   A  +LP GGK+ IS   + +  I ++  NG      +    + 
Sbjct: 724 PFDAGKIRQALLNISKNALGALPEGGKIEISTALAGDAAIINVSDNGQGIEPEDIPL-LF 782

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +       +  E+  R+       +  V S  L 
Sbjct: 783 EPFFTRKTGGTGLGLSITQRIIDEHHGRITVTSSKGNGTVFSVSLP 828


>gi|307265090|ref|ZP_07546650.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326390846|ref|ZP_08212398.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306919888|gb|EFN50102.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325993105|gb|EGD51545.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 470

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 75/233 (32%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MAK +       D+     + + H++ SP+ +I   ++ + +         + +++++  
Sbjct: 237 MAKELE---QLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPKEKACDYLKIVQKE 293

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------W 104
           +         F+ +    +G         DI ++I   +   ++  V             
Sbjct: 294 TRRMSRLINDFLEMTKLESGQFPLNKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
               I    +  ++L NL   A       G + I  +   ++   ++K NG      +  
Sbjct: 354 RRIVIADKDKIEQVLTNLIDNAIKFSKEKGIIHIFTEIKDDKAFITIKDNGIGISPEDQE 413

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +     D   +  Y V  + + +   +  E         +  L 
Sbjct: 414 HIWDRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESELGKGTAFTFTLP 466


>gi|56419263|ref|YP_146581.1| hypothetical protein GK0728 [Geobacillus kaustophilus HTA426]
 gi|56379105|dbj|BAD75013.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 546

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 65/234 (27%), Gaps = 23/234 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
               + S  L A+  + + I H++ +P+ AI  + +LL      +  I   +  +     
Sbjct: 311 EAQLVQSGKLAAIGEMAAGIAHELNNPLTAILGNAQLLLRSFSKDDRIYKLLFDIYSCGK 370

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KID 110
               I    +  +       +       +EQV+        +  +               
Sbjct: 371 RCKTIIQNLLTFSRQDEYRFEDCSINDAVEQVLGLIGDQICKQNIIIQKRLDVSIELIEG 430

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKINGNLARFPE 162
             ++ ++I+LNL + A  +L         +           ++  + S++ NG       
Sbjct: 431 NVQQISQIVLNLLINAKDALEEIDIPEKIIVIETKSIVEAGEHWVVLSVRDNGKGIEEQY 490

Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                              +     + +A  +   +               L K
Sbjct: 491 LQEIFNPFFTTKRPGKGTGLGLSVSLGIAEAHGGTIEVVSELGKGSEFILKLPK 544


>gi|311067914|ref|YP_003972837.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus atrophaeus 1942]
 gi|310868431|gb|ADP31906.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus atrophaeus 1942]
          Length = 606

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 74/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     L S  L     L + I H+I +P+ AI   L+L+     G E     +    S
Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
              +I  + + LA     +    + L  +       +          ++ ++  + I ++
Sbjct: 441 RIELILSELLMLAKPQQHAFKEHLNLKKLISEVTALLETQANLNGIFIKTAFQRDSIFIN 500

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ ++          A  S+P GG V I   + ++    ++K  G          +I +
Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVEIDTTEDEHSVHVTIKDEGEGIPEK-VLKRIGE 559

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       +   ++  +  +   +          K
Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGTIQVDSKPEKGTAFKISFPK 605


>gi|227889096|ref|ZP_04006901.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
 gi|227850325|gb|EEJ60411.1| histidine kinase [Lactobacillus johnsonii ATCC 33200]
          Length = 621

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 68/242 (28%), Gaps = 34/242 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +                S + H++ +P+ ++   +E L      +  I  + + +I+  
Sbjct: 371 QQQKNEREQQQ-----FVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPKFLHVIQDE 425

Query: 57  SMSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   I  +  +                 +      +         ++   +        +
Sbjct: 426 TERMIRMINDLLSLSRMDRGVAKMDLEWVNLNDFVNHVLNRFDMMLKSDTDKMHKKKYSI 485

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +  +  + + +  +     +++ N+   A    P GG +T+ +  ++   I S+   G  
Sbjct: 486 KREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLG 545

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  +         
Sbjct: 546 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGSGSTFYIS 605

Query: 213 LE 214
           L 
Sbjct: 606 LP 607


>gi|242277863|ref|YP_002989992.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242120757|gb|ACS78453.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 471

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 75/230 (32%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG---------IEDEV 49
           +AK     + +  L ++  L S I H + +P+  I  S ++L+E           + + +
Sbjct: 236 LAKRRRQLVQAQKLSSIGTLSSGIAHQLNNPLNNISTSCQILEERQKGQDELSDRMMNNI 295

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           MQ    +       L+F R +    G V+  + +     ++   +  +  + +      I
Sbjct: 296 MQETLRARDIVKGLLEFSRESEYSPGPVEINMVMKSAMDLVSSQVPSNISLSMEIPEHII 355

Query: 110 DLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166
             +  R   +  +NL + A  ++                  +  +   G     PE   +
Sbjct: 356 VHADRRKLQEAFINLLINAVQAIEGNPGSITVTAFMDQENTVIKVNDTGQGM-SPEIMER 414

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +        +  Y V  +  +++  +  E            L 
Sbjct: 415 IFDPFFSTKEVGQGTGLGLYIVYGIIEKHQGSIRTESSPGEGTSFYITLP 464


>gi|172056400|ref|YP_001812860.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171988921|gb|ACB59843.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 845

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 66/232 (28%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++I     +  L   L S + H++ +P+ +I+   EL+     +   + + +  I   + 
Sbjct: 607 RDITRETEADRLKTELVSTVSHELRTPLSSIYGFTELMLNREIDAIKQQKYLSTIHNETE 666

Query: 59  SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                +              R    +      +  +  + +       +   +       
Sbjct: 667 RLSNLVTDFLDVQRMQSGGQRYQMAHLDLYSIVDQVIGVYKASNGLHDIQLHLLSVERPA 726

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164
            I       ++L NL   A    P GG+V I+V   +      +  +G           F
Sbjct: 727 IIGDETRIKQLLNNLVNNAIKYSPDGGQVDITVSTDQENATIQITDHGIGIPQYAFAHLF 786

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      I    +       +  E+   +  E         +  L 
Sbjct: 787 DKFYRVDNSDTRRIGGTGLGLSICKEIVKEHDGVIHVESTVGKGSTFTVALP 838


>gi|254519261|ref|ZP_05131317.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
 gi|226913010|gb|EEH98211.1| multi-sensor signal transduction histidine kinase [Clostridium sp.
           7_2_43FAA]
          Length = 568

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 68/220 (30%), Gaps = 16/220 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLK--- 65
            ++ +   + + H++ +P+ +I    E L   +++   ++ + +I   +      +    
Sbjct: 340 ENIRSQFVANVSHELKTPLTSIKGFAETLKFVEDLPTRNKFLDIIDKEAERLTNLINDIL 399

Query: 66  -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                    ++          +  + ++     +   ++     + T E      +  ++
Sbjct: 400 ILSNIENNHKMKEEEFNPAKVIEDVINMVTPQMNSKQIEINFSSNGTNELNGDRDKFFQM 459

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           +LNL   A         ++I   D  +     ++ NG      +    F +    +    
Sbjct: 460 ILNLVENAIKYSNDKTLISIRTYDINDYTYIEVEDNGIGIPKEDLPRIFERFYRVDKSRA 519

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +A      +  +   +     +  L K
Sbjct: 520 KGGTGLGLAIVKHIARMFNGEIFVKSTLNKGTKFTIKLRK 559


>gi|297617002|ref|YP_003702161.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144839|gb|ADI01596.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 352

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 65/223 (29%), Gaps = 24/223 (10%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMR 68
           + +   + + H++ +P+ AI   +E L +  +E        + +I   +      +  + 
Sbjct: 128 MRSEFVANVSHELRTPLTAIKGFVETLLDGALEDKLICRRFLTIIEGENNRLTRLIDDLL 187

Query: 69  LAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
                                  +  +  +          +++ +  +   +  +     
Sbjct: 188 TLSAIESRERKLTLKPVCLVTSIIQVMNILGPQAREKRLHLELIFNRDLPPVKADEDLVG 247

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           ++L+NL   A      GGK+ I V+   ++   S+   G      E   ++ +       
Sbjct: 248 QVLINLIDNAIKYTSPGGKIVIRVKRGGDQVFTSITDTGTGI-PQESLPRLFERFYRVDK 306

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                +    +    V  +   +   +  E            L
Sbjct: 307 ARSRELGGTGLGLAIVKHIVESHGGEVFVESELGKGSTFGFSL 349


>gi|296502015|ref|YP_003663715.1| sporulation kinase D [Bacillus thuringiensis BMB171]
 gi|296323067|gb|ADH05995.1| sporulation kinase D [Bacillus thuringiensis BMB171]
          Length = 498

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 494


>gi|229144038|ref|ZP_04272454.1| hypothetical protein bcere0012_12010 [Bacillus cereus BDRD-ST24]
 gi|228639435|gb|EEK95849.1| hypothetical protein bcere0012_12010 [Bacillus cereus BDRD-ST24]
          Length = 508

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 504


>gi|95931066|ref|ZP_01313793.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132875|gb|EAT14547.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 530

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 64/220 (29%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIR 63
            S  L +L  L + I H+I +P+  I     +  E         + +  I   +      
Sbjct: 298 RSERLASLGKLVAGIAHEINNPLTGILMFSSMAAETPGISEQMKKDLDTITQETQRCAGI 357

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           ++ +      +  + + I +  I       V    +  D  +   +  +  +L  +  ++
Sbjct: 358 VRGLLDFGRESIPMKTYISVNTILDKTLALVENQTLFQDVEIAREYDDQIPELEGDPNQL 417

Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
                     A  ++  GG++ I    +    +  +   G      E   +I D    + 
Sbjct: 418 EQVFMNIFINAAQAMLAGGQLAIKTWFNDEMVMIRIADTGCGI-SGENLERIFDPFFTTK 476

Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +   +  E         +  L 
Sbjct: 477 DQQGTGLGLSVSYGIVENHGGDIRVESCPAKGTAFTIRLP 516


>gi|329576539|gb|EGG58046.1| sensor protein kinase WalK [Enterococcus faecalis TX1467]
          Length = 609

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   E+           ++            L   R
Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
           +  G T          + +  + D   ++ +    + +++  +T  +  +  +     ++
Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKREFWVELDTDKVIQV 498

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           L N+   A    P GG +T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599


>gi|332971389|gb|EGK10347.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 575

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 73/222 (32%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60
            +    +L  +  V LL + + H+I +P+ +I   +++   E     +   +I       
Sbjct: 317 EEEQRRHLEKLSAVGLLAAGLAHEIRNPLTSIRGFIQISAAESPEVKKWESVILPEIDRI 376

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLS 112
              LK             +L  L  +   +   +     +                   +
Sbjct: 377 NDLLKQFLHLSESRPVRHTLFNLDRLIDDVLQLLNPRAILMGHELVPRPPASPVIVEADT 436

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++L+NL      SL   G V++  +++ +  +  ++ +G+    PE  ++I D   
Sbjct: 437 EQLKQVLINLVQNGLESLKSKGMVSVGWKEAGDRVVVRVRDSGSGI-PPEHMSRIFDPFF 495

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  D   +       +  E+  ++            +  + 
Sbjct: 496 STKGDGTGMGLSICHRIISEHGGQIHVTSQPGRGTTFNIHMP 537


>gi|218288604|ref|ZP_03492881.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218241261|gb|EED08436.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 493

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 71/226 (31%), Gaps = 13/226 (5%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           +A +      S  L A+  L + I H+I +P+ A+   ++L+           ++++R  
Sbjct: 262 LAASRELLARSDKLAAVGQLAAGIAHEIRNPLTALRGFIDLMYQRARSNNRRYLEIMRGE 321

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------ 110
                  +  +             + L D+ Q +  F++    +       +        
Sbjct: 322 VSRMEAIVSELLRLARPDRPQFQQLDLVDLVQGVVAFMSAQALLHGVEIQYEPRAATVMV 381

Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++ +NL      ++  GG + + V +        +   G      E   +I 
Sbjct: 382 EGDPNQLKQVFINLMRNGIEAMQPGGALRVLVWEDGGWARVQIADQGGGMPPEEL-ARIG 440

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +  ++   L  E        ++ LL 
Sbjct: 441 EPFFTTKEQGTGLGVMVSKRMVADHGGDLRIESEVGRGTTVTVLLP 486


>gi|332983368|ref|YP_004464809.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332701046|gb|AEE97987.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 535

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 76/233 (32%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +     +    L + L   I HD+ +P+ +I  S        ++L +    D +  +  
Sbjct: 289 QQRAKIEMEHERLRSDLLRAISHDLRTPLTSILGSSSTVIENYDVLTDEMRRDFLQDIYD 348

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEK 108
            +   +I+    + +     G ++    +  +E+++ + ++          + VS   E 
Sbjct: 349 DAEWLSILVENILSMTRFSEGRIELKKEMEAVEEIVAEAVSRVNKRAKQHEISVSVPKEL 408

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +  +     ++L+NL   A        K+ +SV+    + +F +  NG      E   
Sbjct: 409 IMIPVDGILIEQVLINLLDNALKYTLPDSKINVSVKKEDGKVMFQVSDNGPGIPEEELPF 468

Query: 166 QIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       ++     +       +   +   +  +       V    + 
Sbjct: 469 IFNRFYTKNLNNTSRPGMGLGLAICKSIVEAHGGEISADNDPAGGAVFRFTIP 521


>gi|324112762|gb|EGC06738.1| hsp90-like protein [Escherichia fergusonii B253]
          Length = 608

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 72/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     L  +  L  L  L + + H++ +P+ AI   ++++ +   + E  +       
Sbjct: 373 RKESQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLN 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L F R        V     + +   + +      +   ++     +  
Sbjct: 433 EIDSINKVIQQLLDFSRPRKSQWQQVYLNALIEETLILAQTSGVQARIDFITELAPSLTA 492

Query: 112 SRERA----KILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++LN+ + A  +   RG     +   + N+   +++ NG          +
Sbjct: 493 IVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAITIEDNGCGIDLS-LQRK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +       + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGCGATFTLILP 599


>gi|301061389|ref|ZP_07202161.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300444513|gb|EFK08506.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 595

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 63/222 (28%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H+I +PI AI   +E L +         +  + +I          ++ +     
Sbjct: 368 FVSNVSHEIKTPITAIKGFVETLRDGSVKNPADAERFLGIIEKHVDRLEAIIEDLLNLSK 427

Query: 73  Y-------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                         +  VD +     I  V      ++  V  + +           + L
Sbjct: 428 IEQTSGKEGLSLVESQMVDIIHNALQICHVAIAEREIEIDVSCAESVTLKVDPTLLEQAL 487

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A      GG + ISV +       +++ +G          ++ +          
Sbjct: 488 VNLLDNAVKYSDTGGTIHISVTEESGSITIAVRDHGVGINKKHLP-RLFERFYRVDKARS 546

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    +    V  +   +   +  E         S  L K
Sbjct: 547 RQLGGTGLGLAIVKHVVQAHGGHITVESTPGEGSTFSIHLPK 588


>gi|258593742|emb|CBE70083.1| putative Multi-sensor signal transduction histidine kinase
           precursor [NC10 bacterium 'Dutch sediment']
          Length = 557

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSM 58
            K       +  L     L + + H++ +P+ AI   +EL+ E G    +++ ++   + 
Sbjct: 324 RKTEARLRQADRLATAGQLAAGLAHEVRNPLAAISGCIELIKEAGTARPQLLDIVLREAE 383

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEKID 110
              +           T +      L  +         +  +    V   +Q         
Sbjct: 384 RLKLVTGQFLDFAKPTLASQKQCNLVALVAEAVSLLEKSCDSAHPVTFSIQREAEEVMAA 443

Query: 111 LSRER-AKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              ++  + L NL + A  ++               ++  N     L   G      E  
Sbjct: 444 GDPDQLKQALWNLGLNAIQAMQMGGRLSFVIRRHGSENGDNWVGIELTDTGQGIPPEEV- 502

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +      +       +      R+     +        LL+
Sbjct: 503 ERIFDPFYTTKPGGTGLGLTITQKIIDNLGGRIEVISREGGGSTFRVLLK 552


>gi|308272876|emb|CBX29480.1| hypothetical protein N47_J04610 [uncultured Desulfobacterium sp.]
          Length = 553

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 79/238 (33%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE-LLDEVGIE-------- 46
           M +     + S  L AL  + + + H+I +P+  I      +E LL E   +        
Sbjct: 310 MNELNAQLVHSDKLAALGKMAAGVAHEINNPLAVIAEKTGWMEDLLTEEEFQNSQNLAEY 369

Query: 47  ----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                ++ + +  +       L F R    +   VD    + +    +E +   +    +
Sbjct: 370 KKSLHKIEEHVERARKVIHGMLGFARRMEPHLEDVDINKVINETISFLESYARTNNISII 429

Query: 103 SWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             +   +        +  ++ LNL   A  ++ + G + I+ + + +E   S+K NG   
Sbjct: 430 YDSNPDLPIIASDHSQIQQVFLNLLTNAVDAIGKDGTININSRRNDSEISVSVKDNGQGI 489

Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I +    +        +       +       +  E  +    + +  L 
Sbjct: 490 -PKEHQAKIFEPFFTTKKSGKGTGLGLSVSYNIVRNMGGTITLESEEGKGTIFTVKLP 546


>gi|296133627|ref|YP_003640874.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296032205|gb|ADG82973.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 587

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L     ++  +    +++I + +      +  
Sbjct: 361 EKMRSEFVANVSHELRTPLTSIKGFVETLLDGAMEDREVARRFLEIINVETNRLSRLIND 420

Query: 67  --------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
                    +        V+    +  +  ++            +     + +       
Sbjct: 421 ILSLSSIEAKNKEISRSPVNFNEIVEKVLPILVPMAEEKNITVETDIHPDLPVIMANEDL 480

Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L+NL   A    P  G+V +S   S      S+K  G     PE  +++ +     
Sbjct: 481 IKQVLINLVDNAIKYTPENGRVVLSATPSGGGLKVSVKDTGIGI-PPESMSRLFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +    V      +   +  E         +  L 
Sbjct: 540 DKARSRELGGTGLGLAIVKHALEAHGGTIKVESQVGMGSKFTFYLP 585


>gi|116621040|ref|YP_823196.1| signal transduction histidine kinase nitrogen specific NtrB
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224202|gb|ABJ82911.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 386

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 62/227 (27%), Gaps = 15/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           M         S  L AL  L + + H++ +P+G I  S E+L      E  +  EV   I
Sbjct: 153 MEAQEAVR-RSDRLAALGQLTAGLAHELRNPLGTIKASAEMLNQQLSKENEVAREVAGFI 211

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                     +                  L             +      +     ++  
Sbjct: 212 STEVDRTNSLVTRFLQFARPLHLRMDREDLTQTLDRAITLAEREAPGIAIYRNYAPEIPP 271

Query: 114 ERA------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++  NL + A  +   GG VT+  +        ++   G+          I
Sbjct: 272 FPFDRELLERVFYNLVLNAAQATAAGGAVTVKTRAQGRTVEIAVIDRGSGIDEK-TMKDI 330

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  +   +    V  +  E+  ++  E       +    L 
Sbjct: 331 FNPFFTTKKEGVGLGLAIVSKIVDEHGGKIAVESEPGKGSIFCVSLP 377


>gi|331685746|ref|ZP_08386328.1| sensor protein ZraS [Escherichia coli H299]
 gi|331077056|gb|EGI48272.1| sensor protein ZraS [Escherichia coli H299]
          Length = 458

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +V+    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVELNTLISHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448


>gi|228971428|ref|ZP_04132054.1| hypothetical protein bthur0003_12080 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978041|ref|ZP_04138420.1| hypothetical protein bthur0002_12450 [Bacillus thuringiensis Bt407]
 gi|228781702|gb|EEM29901.1| hypothetical protein bthur0002_12450 [Bacillus thuringiensis Bt407]
 gi|228788295|gb|EEM36248.1| hypothetical protein bthur0003_12080 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 486

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482


>gi|78221921|ref|YP_383668.1| Cache sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78193176|gb|ABB30943.1| Cache sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 655

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 56/231 (24%), Gaps = 19/231 (8%)

Query: 2   AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
            +N            + +L  L S + H+I +P+G I      ++    E       +  
Sbjct: 420 RQNKEMEASLAQQGKMASLGVLSSGVAHEINNPLGVILGYASYIEGKTSEDDPNYRFIHE 479

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107
           I+  S      ++ +               + D+                  V   ++ E
Sbjct: 480 IKRESKRCKKIVQDLLSYARTPKPALEWTDVNDLLGQIVDFAANHTDMHHVTVVKDFSPE 539

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +  +I      +   +             S  D +         NG      + 
Sbjct: 540 LPRVMVDGDQIRQVAINLILNAGAAMSGEGTLTVKSFLDGEGYVNIVFCDNGAGIPAEDI 599

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +       +   +  ++           +   L 
Sbjct: 600 -EKIFEPFFTTKAKGTGLGLAITKQIIEMHHGKISILSEVGKGSDVIVKLP 649


>gi|95929932|ref|ZP_01312672.1| GAF sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133901|gb|EAT15560.1| GAF sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 549

 Score =  127 bits (320), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLI 53
           K     + S  L A+  + + + H++ SP+  I  + +LL             D+++   
Sbjct: 312 KMEAQLVQSAKLAAIGEMAAGVAHELNSPMTVIIGTAQLLARELAEQNVSEEIDDIINCG 371

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS- 112
                     L F R       S D    +  +  +I+  I  ++   ++    K+    
Sbjct: 372 LRCKRIIQNLLTFSRQDQIAVSSTDLNSEVERVLSLIQYQINRNQIRIIADLDPKLPTMT 431

Query: 113 ---RERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
               +  ++L NL + A  +L            +  +  +D K   I S++ NG      
Sbjct: 432 ANGPQIQQVLTNLLVNARDALDSLNDEEKVIHVRTHVREKDGKRWAIISVEDNGCGIEEK 491

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I      S        +     + +A  +   +  +         S +L 
Sbjct: 492 DL-QKIFTPFFTSKDATKGTGLGLSVSLGIAQGHNGTIEVKSTPGQGSTFSLVLP 545


>gi|323704003|ref|ZP_08115626.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531032|gb|EGB20948.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 498

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           +   I       +      + + H++ +P+  I    E L +        ++E +  I  
Sbjct: 251 LNDKINLLRQIDETRRDFVASVSHELRTPLTIIQGYTEALLDEVVETPEKKEEYLHSILE 310

Query: 56  SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107
            ++     +  +       TG V       D+  +    +   + +      +       
Sbjct: 311 ETLRLRRLVNDLLDLRQIETGQVKLNKQAVDLADLFSAVLQKMEGLFREKQVDLKLALPE 370

Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L+NL   A  + P GG++ + +  S NE    +  +G      E 
Sbjct: 371 KPVVAEVDPDRIGQVLINLVDNALRATPGGGRILVKLMVSDNEITVKVTDSGPGIPKEEQ 430

Query: 163 --KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +   +       +    V  L   +  R+  +         S  L 
Sbjct: 431 KLIWHKFYKIDKSRSRSGGGTGLGLAIVKQLVEIHGGRITLDSQPGQGTTFSFTLP 486


>gi|116628743|ref|YP_813915.1| Signal transduction histidine kinase [Lactobacillus gasseri ATCC
           33323]
 gi|238852957|ref|ZP_04643356.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282852391|ref|ZP_06261733.1| PAS domain S-box [Lactobacillus gasseri 224-1]
 gi|116094325|gb|ABJ59477.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           gasseri ATCC 33323]
 gi|238834407|gb|EEQ26645.1| sensor protein YycG [Lactobacillus gasseri 202-4]
 gi|282556133|gb|EFB61753.1| PAS domain S-box [Lactobacillus gasseri 224-1]
          Length = 621

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 68/242 (28%), Gaps = 34/242 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +                S + H++ +P+ ++   +E L      +  I  + + +I+  
Sbjct: 371 QQQKNEREQQQ-----FVSNVSHELRTPLTSLRAYVEALNDGAWKDPNIAPQFLHVIQDE 425

Query: 57  SMSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   I  +  +                 +      +         ++   +        +
Sbjct: 426 TERMIRMINDLLSLSRMDRGVARMDLEWVNLNDFVNHVLNRFDMMLKSDSDKMHKKKYTI 485

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +  +  + + +  +     +++ N+   A    P GG +T+ +  ++   I S+   G  
Sbjct: 486 KREFPHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLLQAQKHVILSISDQGLG 545

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  +  +         
Sbjct: 546 IPRKDLNKIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGRIWADSAEGAGSTFYIS 605

Query: 213 LE 214
           L 
Sbjct: 606 LP 607


>gi|295112753|emb|CBL31390.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           sp. 7L76]
 gi|315145505|gb|EFT89521.1| PAS domain S-box [Enterococcus faecalis TX2141]
 gi|315162568|gb|EFU06585.1| PAS domain S-box [Enterococcus faecalis TX0645]
          Length = 609

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 70/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   E+           ++            L   R
Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
           +  G T          + +  + D   ++ +    + +++  +T   + +  +     ++
Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
             N+   A    P GG +T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 499 FDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599


>gi|295401271|ref|ZP_06811243.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312111907|ref|YP_003990223.1| signal transduction histidine kinase NtrB [Geobacillus sp. Y4.1MC1]
 gi|294976678|gb|EFG52284.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311217008|gb|ADP75612.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. Y4.1MC1]
          Length = 744

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K +   L     +++V  L + I H+I +P+ A+   ++LL     ED  M    + S 
Sbjct: 502 RKELELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSIKEDYSMYFNVIMSE 561

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDL 111
                  +    +             +  I Q     +    +  + ++   +      +
Sbjct: 562 LKRIESIITEFLVLAKPQAIQYQQNDVCKIMQDTIDLISAQAMMHNVQIVADFALPIPCI 621

Query: 112 SRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             E  ++      +   ++    K         +   +    S+   G      +K  ++
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGEVTVRIGRLDDSHIRISITDQGCGI-PQDKIKKL 680

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++ ++  E            L 
Sbjct: 681 GEPFYTTKERGTGLGLMVSYKIIEEHQGKIDVESEVGVGTTFHITLP 727


>gi|229149635|ref|ZP_04277866.1| hypothetical protein bcere0011_11940 [Bacillus cereus m1550]
 gi|228633845|gb|EEK90443.1| hypothetical protein bcere0011_11940 [Bacillus cereus m1550]
          Length = 486

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTTVHIEIP 482


>gi|253698921|ref|YP_003020110.1| histidine kinase [Geobacter sp. M21]
 gi|251773771|gb|ACT16352.1| histidine kinase [Geobacter sp. M21]
          Length = 517

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 60/223 (26%), Gaps = 19/223 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKF 66
            +  L ++  + + I H+I +P+  I  ++ +L +    +D  +Q+I           K 
Sbjct: 275 RADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPDDGRVQIIGEVLEQVSRLDKT 334

Query: 67  MRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +     +     +     DI            +     +   ++        +  +  +I
Sbjct: 335 VNDLLFFGKPTVAEPTCTDINAALKKILIFASQHRGGKNIDKRLELAENLPTVYVDPKQI 394

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEKFTQIVDGN 171
                 +   ++            S        +     +   G     P+   +I    
Sbjct: 395 QQVFLNLFLNAVQAMQAGGTLTVRSGLAKVEGIDMVQVRVTDTGQGI-PPQILEKIFTPF 453

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       L  ++  RL     D      +  L 
Sbjct: 454 FTTKAQGTGLGLAISHRLVEQHGGRLSVVSQDGMGTTFTVELP 496


>gi|288555853|ref|YP_003427788.1| PAS/PAC signal transduction histidine kinase [Bacillus pseudofirmus
           OF4]
 gi|288547013|gb|ADC50896.1| PAS/PAC signal transduction histidine kinase [Bacillus pseudofirmus
           OF4]
          Length = 605

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 70/215 (32%), Gaps = 11/215 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLK--- 65
             + +VA L + + H+I +P+ AI   L+L        ++ + L+          +    
Sbjct: 388 DKLSVVAQLAAGVAHEIRNPLTAIKGFLQLFQREKEFNEQFLDLVMEELERVESIIYEYL 447

Query: 66  -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                     F        +  +  + +       V    +           ++  ++LL
Sbjct: 448 TLAKPNHESTFDNLHLQPLVNKVMTLVETQSIMKNVQIDFEYENVPPICGSEKQLKQVLL 507

Query: 121 NLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
           NL   A  ++   G++ I +   ++++    ++ NG      E+  ++ +    +     
Sbjct: 508 NLIKNAIEAVDVNGEIVIRLLNHAEDQICIQIEDNGCGI-SSERIARLGEPFYSTKEKGT 566

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       +   ++  L     +     +  +L 
Sbjct: 567 GLGLMVCYKIIEHHQGILTIHSEEGAGTRIDVILP 601


>gi|229097165|ref|ZP_04228127.1| hypothetical protein bcere0020_24080 [Bacillus cereus Rock3-29]
 gi|228685976|gb|EEL39892.1| hypothetical protein bcere0020_24080 [Bacillus cereus Rock3-29]
          Length = 590

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSEEIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  G        +  KN  I S+   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMLNGGKISIHIKEIHKNGFIISVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISITSEVGVGTTVTIYLPK 567


>gi|83592720|ref|YP_426472.1| sensory histidine kinase AtoS [Rhodospirillum rubrum ATCC 11170]
 gi|83575634|gb|ABC22185.1| multi-sensor signal transduction histidine kinase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 617

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 62/217 (28%), Gaps = 12/217 (5%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           + +  L AL  L + I H+I +P+ +I   ++ L E     E      L           
Sbjct: 391 MRADRLAALGELTAGIAHEIRNPLTSIRGFVQYLMECASPKEWQHYGPLIIRQVDSLNHI 450

Query: 67  -----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                              +     E         + R+++   GE   +  +   +   
Sbjct: 451 ITELLAFGRPRAPRIDKVHLDQIAQEMAFLARGKSEARIEMDLEGEVPAIEADGESLKQA 510

Query: 122 LFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           L  +   ++    K         +   +  +  +  +G     P+   ++ D    +   
Sbjct: 511 LLNLIINAMQAISKDGSVTVAVRRLGDDHVMVKVSDDGIGL-APDYLDKVFDPFFSTKPA 569

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   ++  +  +       V++  L 
Sbjct: 570 GTGLGLAVVHRIVDAHQGVITLDSRLGEGTVVTIRLP 606


>gi|317484438|ref|ZP_07943351.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924298|gb|EFV45471.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 590

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 67/215 (31%), Gaps = 15/215 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59
               L A+  L + + H++ +P+ +I            E   +      +++ +   + +
Sbjct: 361 RREKLAAVGNLAAGVAHELRNPLSSIKGYATYFGGRFPEGSADREAAQVMVKEVERLNRA 420

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWT---GEKIDLSRER 115
               +   R              +GD  ++I +D       ++        +        
Sbjct: 421 IGDLIGLSRPTDIRPRMTGMRRLIGDTLRLIGQDAANHKVAIRFDAPEVLPDVAIDPDRM 480

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +++LNL +    ++P GG++ +S+    +     ++  G     P+    I D    + 
Sbjct: 481 RQVILNLCLNGLEAMPDGGELFLSLHPEPDALRLEIRDTGVGI-APDALPHIFDPYFTTK 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                +    V  +   +   +          V  
Sbjct: 540 GQGTGLGLATVHKIMEAHGGSISVTSEPGQGAVFR 574


>gi|296329726|ref|ZP_06872211.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305674123|ref|YP_003865795.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296153224|gb|EFG94088.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|305412367|gb|ADM37486.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 606

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     L S  L     L + I H+I +P+ AI   L+L+     G E     +    S
Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
              +I  + + LA     +V   + L  +       +          ++ S+  + I ++
Sbjct: 441 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYENDSIYIN 500

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ ++          A  S+P GG V I + + ++    ++K  G          +I +
Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 559

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       +   ++  +  +   +          K
Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSQPEKGTAFKISFPK 605


>gi|168704468|ref|ZP_02736745.1| multi-sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 387

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 76/230 (33%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
           +       L +  L A+  L + + H++ +P+  I   +E  L          + + L  
Sbjct: 155 LQDQERDLLRAEQLAAVGRLAAGVAHEVRNPLTGIKLLVEGALRSESPASLTSEDLDLIR 214

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKI 109
              +   + ++    +  +        D+  ++ + +   +         V+V      +
Sbjct: 215 QEIVRMERTVQGLLDFARTPPLECRPHDLRVLVSEAVNRARARAERKPVAVKVELAAAPL 274

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFT 165
            +S +R ++L  L      A  + P GG V++ V+         ++  +G     PE   
Sbjct: 275 PVSADRDQMLSLLTNLLFNAVDATPTGGNVSVRVEGTPDGPPTVTVNDSGPGI-APEAMG 333

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++      +      +       +A ++   L      +     +  L +
Sbjct: 334 KLFTPFATTKPTGTGLGLTVARRIARDHGGTLTATNRPEGGAAFTLTLPR 383


>gi|120601284|ref|YP_965684.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|120561513|gb|ABM27257.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
          Length = 553

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57
             N+   L  S  L A+  L + I H+I +P+ AI      LL    +++     +++  
Sbjct: 256 RTNMELRLQQSEKLAAIGELATYIAHEIRNPLFAIGGFANSLLRLPTLDETARGKVQVIL 315

Query: 58  MSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106
             +      +R    +           D    +    +++       +        +   
Sbjct: 316 EESRRLDNILRSILNFARPTTSKAGKADLNGVVRQTLELMAFGFDTRRITSELALAADLP 375

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +    + L+NL   A  ++P GG +T+    + +    +++ +G      E   +
Sbjct: 376 RVRGDAELIKQCLINLVKNAQEAMPGGGVLTVRTGMTHSHVFVTVEDSGEGI-PAEMHER 434

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      I       +  +   ++           ++  L 
Sbjct: 435 IFSPFFSTKEKGAGIGLAMTRKIVEDMGGKVDLVSHVGKGTRITLFLP 482


>gi|46581554|ref|YP_012362.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450976|gb|AAS97622.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235198|gb|ADP88052.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 553

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57
             N+   L  S  L A+  L + I H+I +P+ AI      LL    +++     +++  
Sbjct: 256 RTNMELRLQQSEKLAAIGELATYIAHEIRNPLFAIGGFANSLLRLPTLDETARGKVQVIL 315

Query: 58  MSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106
             +      +R    +           D    +    +++       +        +   
Sbjct: 316 EESRRLDNILRSILNFARPTTSKAGKADLNGVVRQTLELMAFGFDTRRITSELALAADLP 375

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +    + L+NL   A  ++P GG +T+    + +    +++ +G      E   +
Sbjct: 376 RVRGDAELIKQCLINLVKNAQEAMPGGGVLTVRTGMTHSHVFVTVEDSGEGI-PAEMHER 434

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      I       +  +   ++           ++  L 
Sbjct: 435 IFSPFFSTKEKGAGIGLAMTRKIVEDMGGKVDLVSHVGKGTRITLFLP 482


>gi|229175296|ref|ZP_04302811.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
 gi|228608128|gb|EEK65435.1| hypothetical protein bcere0006_43760 [Bacillus cereus MM3]
          Length = 545

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                 + G       L  +  +         +  +V        I       +I +NL 
Sbjct: 384 QQGFKLSMGTVDMKGLLEDIRMVLDNKAGEKEISLQVNALKGVSVIGDPSRLKQIFINLM 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 444 NNAIVYTPAGGVVSVELAEDKYNAYIKVSDTGIGISKDEIP-RIFERFYRVDKARSRNTG 502

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         + +L K
Sbjct: 503 GTGLGLSIVKHLVEAHHGTITVDSEVGEGTTFTVVLPK 540


>gi|242281225|ref|YP_002993354.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242124119|gb|ACS81815.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 477

 Score =  127 bits (320), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 73/231 (31%), Gaps = 18/231 (7%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLI 53
           M +   F      S  L ++  + S + H+I +P+G I +S ELL       +   ++++
Sbjct: 243 MRERRDFEKELNQSEKLASIGRMVSGVAHEIRNPLGIIRSSSELLLKRMKESDPVNVKIL 302

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGE 107
                      + +     Y       +       L D   +  +       +++     
Sbjct: 303 GAIHEETKRLSRTVSDFLDYARPRKIAMTALDPADLLDKIYMFLESKCRQSNIELKREYL 362

Query: 108 KIDLSRER----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +   NL   A  ++ + G + +S+ +++      +  +G     PE 
Sbjct: 363 PGHQVCGDEDLLYRAFYNLVGNAMQAVEKDGYIAVSINEAEGGISVVVSDSGTG-FTPEI 421

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ D    +  +   +    V  +   +  +L      +    L   L 
Sbjct: 422 IEKVKDPFFTTKDNGTGLGLAIVTNIVESHNGKLRIGNNPEGGARLEIFLP 472


>gi|328952482|ref|YP_004369816.1| multi-sensor signal transduction multi-kinase [Desulfobacca
            acetoxidans DSM 11109]
 gi|328452806|gb|AEB08635.1| multi-sensor signal transduction multi-kinase [Desulfobacca
            acetoxidans DSM 11109]
          Length = 1341

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 1    MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDE-VMQLI 53
            + +        L S  L AL  + + I H+I +P+  I     ++L +        ++ +
Sbjct: 1108 LRERKRMEEELLRSERLAALGKMAAHISHEIKNPLMVIGGFARQVLKDTAQSPPKNLEKL 1167

Query: 54   RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------- 103
             +          F+     Y    +     G++ ++I +     +               
Sbjct: 1168 HIIVDEVKRLEDFLVEVGSYAKFSEPQKQPGNLNELIRETCQRLEPSLQEKNIDLVLKLD 1227

Query: 104  -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                E +       ++LLN+      ++  GG ++ +        +  +   G+    PE
Sbjct: 1228 PDLPEILFDPGHIRQVLLNIAKNGIEAMDAGGTLSFTTGRRAGRILVQVSDTGSGI-PPE 1286

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I      S      +       +   ++  +  E        +   L 
Sbjct: 1287 IQEKIFQPFFSSKPKGSGLGLAISQKIIEAHQGEITIESEPQKGTRVILFLP 1338


>gi|229824433|ref|ZP_04450502.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
 gi|229786034|gb|EEP22148.1| hypothetical protein GCWU000282_01756 [Catonella morbi ATCC 51271]
          Length = 616

 Score =  127 bits (319), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIR--------- 63
             S + H++ +P+ +I +  E L E   +      + + +I+L +   +           
Sbjct: 381 FVSNVSHELRTPLTSIKSYTEALREGAWQDEVIAPQFLNVIQLETDRMMRMIGNLLDLSK 440

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
                  + L +     + S I       + ++      +++  +T  +I L  ++    
Sbjct: 441 IHEGQYKLNLEYIDFKRMVSHILDRFEFMLEQNPDQKKFKLKRDFTSREIYLEIDQDRVT 500

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           +++ N+   A    P GG + + ++DS +    S+K  G      +              
Sbjct: 501 QVIDNILNNAIKYSPDGGVIVVKIEDSHSHVHLSIKDQGLGIPQKDIPHLFQRFYRVDKA 560

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +   +  ++    ++         L 
Sbjct: 561 RSREQGGTGLGLAISKEIIELHGGKIWATSVEGKGSTFGFDLP 603


>gi|261410070|ref|YP_003246311.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261286533|gb|ACX68504.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 459

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 60/233 (25%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK +        +     S + H+I SP+ +I    + L    + +E  Q       + 
Sbjct: 228 MAKGLAQL---EQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLSEEQQQHYLSIIEAE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             R+  +        S+D    + D                  W     DL+ +      
Sbjct: 285 SRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHTEWNWRSKDLTIDMSLPPT 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   +       G +++ V +   +    +   G           
Sbjct: 345 YVYGDQQLLHQVWTNLITNSIKFTAPEGAISLRVIEHNTQCRIEISDTGIGIPQEHLPHI 404

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      + +  S  +       +   +  R+            + +L 
Sbjct: 405 FNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457


>gi|119963101|ref|YP_946860.1| signal transduction histidine kinase domain-containing protein
           [Arthrobacter aurescens TC1]
 gi|119949960|gb|ABM08871.1| putative signal transduction histidine kinase domains protein
           [Arthrobacter aurescens TC1]
          Length = 541

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 20/221 (9%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII--------- 62
           L A     + + H+  +P+ +I   +EL+ +     +     +L  +             
Sbjct: 320 LAAKDDFVANVSHEFRTPLTSILGYVELILDDPDALDARARKQLDIVRRNAERLLTLVSD 379

Query: 63  -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKI 118
             +           +VD    +       E   A       + +    E    S   A++
Sbjct: 380 LLVVRSGQIVIQPHAVDVAELVRGSVNSAEPRAAKAGIRLSMDIPEALEAHVDSSRIAQV 439

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173
           L NL   A    P GG V ++  + ++     +   G      E+               
Sbjct: 440 LDNLVSNAIKYSPDGGNVEVAAWEDQDFVFCRVTDTGMGMNEEEQAEAFTKFFRAGGVRN 499

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           STI    +       +   +   ++           +  + 
Sbjct: 500 STIPGVGLGLPISKAIVEAHGGTIMVASEPGQGTTFTVKIP 540


>gi|147920929|ref|YP_685264.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
 gi|110620660|emb|CAJ35938.1| putative signal transduction histidine kinase [uncultured
           methanogenic archaeon RC-I]
          Length = 534

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 29/239 (12%)

Query: 6   CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53
              +S   L +L        + I H++ +P+  I    ELL +         + + +  I
Sbjct: 293 ELEISYERLKSLDRMKMEFFTLISHELRTPLTTIKGYAELLKDGTLGPVNDEQRDRLSRI 352

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105
             S       ++ +    G      +   +      + + +                   
Sbjct: 353 DASVDRLTGIVESLSDLSGVASRQYAGEKIPVSLNELIEEVVRGIDFLADLKKLKITLDV 412

Query: 106 ----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++LLN+   A    P GG+++ISV+D  +  + +++  G      
Sbjct: 413 PLTLPMISADRSRIQQVLLNVLNNAIKYTPDGGQISISVRDECDHLLIAVRDTGIGIPKE 472

Query: 162 EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                       +       +   +  ++  +            L K
Sbjct: 473 DIENIFSGFYHSGYKLSYEYKGAGLGLAISRKIVESHGGKIWADSEPGKGSTFFISLPK 531


>gi|229084423|ref|ZP_04216703.1| hypothetical protein bcere0022_10630 [Bacillus cereus Rock3-44]
 gi|228698963|gb|EEL51668.1| hypothetical protein bcere0022_10630 [Bacillus cereus Rock3-44]
          Length = 522

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 67/223 (30%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     +  ++LV    +   H+I +P+  I   + LL E   +++      +       
Sbjct: 292 ERQQNEMQKIELVGTFAASTAHEIRNPLTGIKGLVTLLKEKHTQEQDQFYFSVIEQEIER 351

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                       K   ++       D +  +  I Q       +   +Q+      I  S
Sbjct: 352 INEIVSEFLILGKPTAISEKRYDVRDIIQEVALIIQSEAHLYNIIFTLQLPDHPVHIRCS 411

Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           ++   +++LN+   A  ++  G  +TI V  +       +   G           +    
Sbjct: 412 KDHMKQVILNITKNAIEAMSSGDMLTIQVTSNNEYAQLHIVDTGKGI-PKHIQKHLFHPF 470

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +      +++ +  ++    +   L 
Sbjct: 471 FTNKDTGTGLGLVICKRIIEMYDGQIVIDSKENQGTTVHIKLP 513


>gi|205372966|ref|ZP_03225774.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4]
          Length = 495

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +    N   ++L+    + I H+I +P+  I   ++LL+E   +        +       
Sbjct: 272 EKKENNAQKLELIGQFSASIAHEIRNPLTGIKGLIQLLNEKYNDKADDMYFSIIYKEINR 331

Query: 63  RLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               +                +   D LI +  I Q   +   V    +       + +S
Sbjct: 332 INDIVGEFLMLGKPSGVSLKISDLRDVLIEITPIIQSEANLYNVHYSYEFPTRPLLVKMS 391

Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            ++  ++LLNL      ++  GG + I +          ++  G+     E   ++ D  
Sbjct: 392 SDQMKQVLLNLSKNGLEAMEEGGLLHIKLSSKGEWIEIKIRDTGSGI-NEENVPKLFDPF 450

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S  +   +       +      ++     ++    ++ LL 
Sbjct: 451 FTSKSEGTGLGLPVCKRIIESINGQISIASKENEWTEVTILLP 493


>gi|148270267|ref|YP_001244727.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
 gi|147735811|gb|ABQ47151.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
          Length = 412

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 26/228 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           ++     + + H++ +P+ +IH   E L     ++  +    +++I   S      +  +
Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLEDKELVKRFLKIIEEESARMTRLINDL 243

Query: 68  --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAK 117
                            VD    +  + ++I+     +    V                +
Sbjct: 244 LDLEKMEESEVNFEMKDVDLCEVIEYVYKIIQPIAEENEVDLVVECEDVVVRGNKERLIQ 303

Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +LLNL   A            KV +   D+ +  +  ++  G      E  ++I +    
Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVLEVEDTGPGI-PKEAQSRIFEKFYR 362

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    +    V  +  ++  R+  E   +   V+   L K
Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDKHGGRIEVESEINQGTVMRVFLPK 410


>gi|251795375|ref|YP_003010106.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus sp. JDR-2]
 gi|247543001|gb|ACT00020.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus sp. JDR-2]
          Length = 606

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 73/226 (32%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQ 51
            ++    + S  L  +  L + + H+I +P+ A+    +LL            I    + 
Sbjct: 376 KRSEEMLVRSEKLSVIGQLAAGVAHEIRNPLTALKGFTQLLKSKAEGNSFYYDIMTNELD 435

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I       +   K     F        L  +  I +     + V  R +       I  
Sbjct: 436 RINFIVNEFMTLAKPHFSKFSTRRLDHILHAVISILETQAILMNVSIRTEFENCIPSIYC 495

Query: 112 SRER-AKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++ +N+   A  ++P GG++TIS  ++        +++  G      E   QI 
Sbjct: 496 DENQLKQVFINIIKNAIEAMPLGGQITISAAMESDHERVRLTIRDEGMGI-PDEIIRQIG 554

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +      +       +  +++  +    +      +  +L 
Sbjct: 555 QPFITTKEKGTGLGLMISSRIIEQHQGLMNISSVPGEGTTIEIILP 600


>gi|77919740|ref|YP_357555.1| two component signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
 gi|77545823|gb|ABA89385.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Pelobacter carbinolicus DSM 2380]
          Length = 559

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 70/226 (30%), Gaps = 17/226 (7%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
           K +   L  S  L A+  L + + H+I +P+ +I  S++LL E       +  +M ++  
Sbjct: 324 KEMEERLKRSDRLAAVGQLAAGLAHEIRNPLASISGSVQLLKENIALGEEDRSLMNIVVK 383

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113
            +      L+   L    +          +    + +  + DKR                
Sbjct: 384 EADRLNGLLREFLLFARPSPPEKQWFRAEEFVSELANLCSADKRFNNIDIQRHCSPDDEL 443

Query: 114 -----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  + L NL + A  ++P GG++      +    +  +   G          +I 
Sbjct: 444 LGDRGQLRQALWNLLINAAEAMPDGGRLIFDFLPNPPRLV--VSDTGPGIPEY-LRQKIY 500

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +    V  +   +   L  +            L 
Sbjct: 501 DPFFTTKDHGTGLGLATVHNIVEAHGGTLELQGSQQGGASFVVCLP 546


>gi|218782152|ref|YP_002433470.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763536|gb|ACL06002.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 609

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 80/234 (34%), Gaps = 21/234 (8%)

Query: 1   MAKNIC----FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LI 53
           M + +       L S  L A+  L S++ H++ +P+  I N+LELL     E    + ++
Sbjct: 371 MEQKLNSVKDQLLQSEKLAAMGKLTSQLAHELNNPLFGIMNTLELLKTEIPETSKRRKIL 430

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105
            ++    +   + ++    ++        + DI  ++E+ + + +R              
Sbjct: 431 DMALSETVRISEMLKKMLSFSKPDQEERQITDINTILEELLLLHERQLQENDVKVVRDLT 490

Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +    +  ++ LN+   A  ++  GG  TI+ +   +     L   G      E
Sbjct: 491 EGLEPVMASKNQLRQVFLNVIANARDAMQEGGTFTITSRAQGDFIYIDLADTGVGI-PEE 549

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++I D    +   +    +          ++   +            +  L 
Sbjct: 550 NLSKIFDTFFTTKGSVQGVGLGLSVCYGFIRDHGGDIKVHSEPGEGTTFTVSLP 603


>gi|45358866|ref|NP_988423.1| sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
 gi|45047732|emb|CAF30859.1| Sensory transduction histidine kinase [Methanococcus maripaludis
           S2]
          Length = 639

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 62/225 (27%), Gaps = 25/225 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLK- 65
            L + L + + H++ +P+ +I   +EL+ +         + + +Q+   + +     ++ 
Sbjct: 411 KLKSELIAVVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNIVRLRRLIES 470

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      + +          +  + +  + +     +    +V             
Sbjct: 471 MLDLSKIERGELEMYREKVNLRSIVCDVIEYLKPLATEKNIKLNKEVE-DIAIEADKDRI 529

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-- 173
            ++L NL   A    P    + +S           +   G      +   +I +   +  
Sbjct: 530 TQVLTNLIENAIKFSPANESILVSGVLEDEHIHLKVTDRGAGIPKKD-MEKIFNRFYQVD 588

Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +   +K  +  E           +L 
Sbjct: 589 SSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILP 633


>gi|229019810|ref|ZP_04176612.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
 gi|229026036|ref|ZP_04182419.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228735252|gb|EEL85864.1| hypothetical protein bcere0029_43210 [Bacillus cereus AH1272]
 gi|228741481|gb|EEL91679.1| hypothetical protein bcere0030_43100 [Bacillus cereus AH1273]
          Length = 545

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +++       + +I   S      ++ +       
Sbjct: 324 ANVSHELKTPITSIKGFSETLLDGAMDNKKFCEHFLHIILKESERMQGLIEDLLDLSKIE 383

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G       L  +  +         +  +V        I       +I +NL 
Sbjct: 384 QQGFRLNMGTVDMKGILEDIHMVLDNKAGEKEISLQVNGLKRVSVIGDPSRLKQIFINLI 443

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++ + + K      +   G      E   +I +              
Sbjct: 444 NNAIVYTPAGGVVSVELLEDKYNAYIKVSDTGIGISKEEIP-RIFERFYRVDKARSRNTG 502

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   ++  +  +         + +L K
Sbjct: 503 GTGLGLSIVKHLVEAHQGTITVDSEVGEGTTFTVVLPK 540


>gi|329925071|ref|ZP_08280015.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
 gi|328940190|gb|EGG36522.1| putative heme sensor protein HssS [Paenibacillus sp. HGF5]
          Length = 459

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK +        +     S + H+I SP+ +I    + L    + +E  Q       + 
Sbjct: 228 MAKGLAQL---EQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLSEEQQQHYLSIIEAE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             R+  +        S+D    + D                  W+    DL+ +      
Sbjct: 285 SRRMSQLSKQLLMLASLDKEENILDKSTFDVAEQIKQVLFHTEWSWRSKDLTIDMSLPPT 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   +       G +++ V +   +    +   G           
Sbjct: 345 YVYGDQQLLHQVWTNLITNSIKFTVPEGAISLRVIEHNTQCRIEISDTGIGIPPEHLPHI 404

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      + +  S  +       +   +  R+            + +L 
Sbjct: 405 FNRFYRVDEARDRSEGSSGLGLSITQKIVELHGGRIEVTSQPGKGTTFTVILP 457


>gi|326202265|ref|ZP_08192134.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987383|gb|EGD48210.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 607

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 64/231 (27%), Gaps = 25/231 (10%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
               L ++     + + H++ +PI +I +  E L     ++       + +I   +    
Sbjct: 375 EQQKLDSMRREFVANVSHELRTPITSIKSYTETLLEGAMEDQETSKRFLCVIDSEADRMT 434

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         + M            +  + +  Q+            V      I 
Sbjct: 435 RLVKDLLQLSRLDNQQMNWKMECVSLDTIVKTIVERLQIEAQRKHQKLDSYVIGDIPAIS 494

Query: 111 LSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
             ++R  ++++NL   +       G++T+ V    N+    +   G        P  F +
Sbjct: 495 ADKDRMEQVIVNLISNSIKYTSEYGEITVYVGIIYNDIYVKVTDTGIGIPSESLPRVFER 554

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +    +       +   +   +           ++  L +
Sbjct: 555 FYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEIGKGTEVTVKLPR 605


>gi|229059542|ref|ZP_04196924.1| hypothetical protein bcere0026_16540 [Bacillus cereus AH603]
 gi|228719825|gb|EEL71419.1| hypothetical protein bcere0026_16540 [Bacillus cereus AH603]
          Length = 488

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59
           + +++   +        L S I HD+ +PI AI   ++ + E        +         
Sbjct: 248 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYH 307

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
            +  +  +         +D        E+V  +    D   ++    +   ++       
Sbjct: 308 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGIAVSWDAQK 367

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160
                         +++ N+   +   + +             +     +K NG      
Sbjct: 368 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGIGIEEK 427

Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +    +           +       +  ++   +  E        L+  L+K
Sbjct: 428 ALPYIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 486


>gi|229161523|ref|ZP_04289503.1| hypothetical protein bcere0009_23090 [Bacillus cereus R309803]
 gi|228621768|gb|EEK78614.1| hypothetical protein bcere0009_23090 [Bacillus cereus R309803]
          Length = 590

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------D 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNLYQIFKNVVSLINTKAIMTNIQVELYTDSKELIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P G        + +    I  +   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPTGGKISIHIKKINNEGVIIHVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567


>gi|323974203|gb|EGB69335.1| hsp90-like protein [Escherichia coli TW10509]
 gi|324110915|gb|EGC04907.1| hsp90-like protein [Escherichia fergusonii B253]
          Length = 458

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESSAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448


>gi|218548320|ref|YP_002382111.1| sensory histidine kinase AtoS [Escherichia fergusonii ATCC 35469]
 gi|218355861|emb|CAQ88476.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Escherichia fergusonii ATCC 35469]
          Length = 608

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 78/228 (34%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K     L  +  L  L  L + + H++ +P+ AI   ++++ +   + E  + + +   
Sbjct: 373 RKESQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTPQPEHQEYLSIVLN 432

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
                 K ++    ++    S      ++ +IE+ + + +   V    + I         
Sbjct: 433 EIDSINKVIQQLLDFSRPRKSQWQQVYLKALIEETLILAQTSGVQARIDFITELDPSLTA 492

Query: 116 --------AKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++LN+ + A  +   RG     +   + N+   +++ NG          +
Sbjct: 493 IVADRELLKQVILNMLINAVQAITARGEIRIRTWMYTANQQAITIEDNGCGIDLS-LQGK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +    +       + +L 
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGCGATFTLILP 599


>gi|322419000|ref|YP_004198223.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320125387|gb|ADW12947.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 586

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 70/234 (29%), Gaps = 28/234 (11%)

Query: 9   LSSMDLVALL----CSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSM 58
           +S+M     +     + + H++ +P+  I    E L      D+ G  D  + +I+  + 
Sbjct: 349 ISAMKKADQIRRDFVANVSHELRTPVTVIKGYAETLLSGDLADDPGRRDRFLGIIQNHAD 408

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++ +                 V     +     ++         V    +   + 
Sbjct: 409 RLSDLVRDLLALSELESGELAMQPQKVLIEDAVRQALLLLSPRAEEKGIVMELGSCAPVS 468

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +R    ++L+NL   A     +GG++ +   +       S++ NG      +   ++
Sbjct: 469 AMADRGRLDQVLINLLENAIKYSGQGGRIQVEAAEEGEMVRVSVRDNGIGIPEKDLP-RL 527

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +                 +    V  +   +   +  E       V S  L +
Sbjct: 528 FERFYRVDEARSRERGGTGLGLSIVKHIVMAHGGSVFVESTVGKGSVFSFTLPR 581


>gi|258511933|ref|YP_003185367.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478659|gb|ACV58978.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 492

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           +A +      S  L A+  L + I H+I +P+ A+   ++L+           ++++R  
Sbjct: 262 LAASRELLARSDKLAAVGQLAAGIAHEIRNPLTALRGFIDLMYQRARSNNRRYLEIMRGE 321

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------ 110
                  +  +             + L D+ Q +  F++    +       +        
Sbjct: 322 VSRMEAIVSELLRLARPDRPQFQQLDLVDLVQEVVAFMSAQALLHGVEIQYEPRAASVMV 381

Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++ +NL      ++  GG + + V +        +   G+    PE   +I 
Sbjct: 382 EGDPNQLKQVFINLMRNGIEAMQPGGALRVLVWEDGGRARVQIADQGSGM-PPEALARIG 440

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +  ++   L  E        ++ LL 
Sbjct: 441 EPFFTTKEQGTGLGVMVSKRMVADHGGDLRIESEVGRGTTVTVLLP 486


>gi|218551013|ref|YP_002384804.1| sensor protein ZraS [Escherichia fergusonii ATCC 35469]
 gi|218358554|emb|CAQ91202.1| sensory histidine kinase in two-component regulatory system with
           ZraR [Escherichia fergusonii ATCC 35469]
          Length = 458

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 72/219 (32%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII- 62
               LVAL  L + + H+I +P+ +I        E     G   ++ Q++   +      
Sbjct: 231 RKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRV 290

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+ ++       +VD    +    Q++           +        E        
Sbjct: 291 VSELLELVKPTHLALKAVDLNTLINHSLQLVSQDANSREIQLRFTANDALPEIQADPDRL 350

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++LLNL++ A  ++ + G ++++  +S      S+  +G      +    I      + 
Sbjct: 351 TQVLLNLYLNAIQAIGQHGVISVTASESSAGVKISVTDSGKGIAADQL-EAIFTPYFTTK 409

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +     +      +  L 
Sbjct: 410 AEGTGLGLAVVHNIVEQHGGTIQVVSQEGKGATFTLWLP 448


>gi|116748939|ref|YP_845626.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698003|gb|ABK17191.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Syntrophobacter fumaroxidans MPOB]
          Length = 952

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 80/237 (33%), Gaps = 24/237 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQL 52
           + +        L S  L AL  L S + H++ +P+ ++    EL+        + + +++
Sbjct: 572 LTQRKALEAQVLQSEKLAALGQLISGVAHELNNPLASVVGYSELVQAGQASAKDKKHLEI 631

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107
           I+  ++ A   +K +            +I + ++ +        DF   + ++ ++   +
Sbjct: 632 IKNEALRASAIVKGLLTFARERKPEKQMIQVNEVLERTLGLRLYDFKVRNIQLVMTLDSQ 691

Query: 108 KIDLSRERAK---ILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLAR 159
                 +  +   + LN+   A  ++       I      +          +  NG+   
Sbjct: 692 LPPTHADFFQLQVVFLNIINNAEHAMGENVGDKILTVSSRLMMDGKVIEVEITDNGSGI- 750

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I D  V +        +       +  E++ ++L E   D        L 
Sbjct: 751 PDEMKNRIFDPFVTTKEVGKGTGLGLSVSYGIVQEHQGQILVESNLDKGTAFKVRLP 807


>gi|228996311|ref|ZP_04155955.1| hypothetical protein bmyco0003_9010 [Bacillus mycoides Rock3-17]
 gi|228763415|gb|EEM12318.1| hypothetical protein bmyco0003_9010 [Bacillus mycoides Rock3-17]
          Length = 328

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 19/221 (8%), Positives = 63/221 (28%), Gaps = 11/221 (4%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
            +     ++  V  L + I H++ +P+  I   ++LL +     ++    +         
Sbjct: 99  ELLKKSDTLKAVGQLAAGIAHEVRNPLTVIKGFMQLLQQEAGEDKEYFRLIFSEIRGIET 158

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------DLSRE 114
           I  +F+ +A       +       ++ V+           +  T               +
Sbjct: 159 ILQEFLSIAKPNVVVFEPKNLCTILDNVVALISTQAIIKNIRITLNMDFENLLVECCEIQ 218

Query: 115 RAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             ++  N+   +  ++           + +  E +  +   G     PE+  ++ +    
Sbjct: 219 LKQVFFNILQNSIEAIQNGQEITINVKKHNSTEVMICISDKGVGI-PPERIKRLGEPFYS 277

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +   +  ++           +   L 
Sbjct: 278 TKEKGTGVGLMISYQIIESHGGKINIRSQVGKGTTVIVFLP 318


>gi|312112640|ref|YP_003990956.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|311217741|gb|ADP76345.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 550

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLS 56
            +     + S  L A+  + + I H++ +P+ AI  + +LL            +     S
Sbjct: 312 RRIEAQLVQSGKLAAIGEMAAGIAHELNNPLTAILGNAQLLLRTAAKDDRSYKLLYDIYS 371

Query: 57  SMSAI-----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107
                       L F R              +  +  +I D I     +      +    
Sbjct: 372 CGRRCKTIIQNLLTFSRQDEYMFEDCSVNEAVEQVLGLIGDQIRKQNIIIRKKLDNSLEL 431

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV--------QDSKNENIFSLKINGNLAR 159
                ++  +I+LNL + A  +L         +        ++ K   + +++ NG    
Sbjct: 432 VEGNIQQIGQIVLNLLINAKDALEEVDVPEKVISIETKSVAEEEKKWVLLTIQDNGKGIE 491

Query: 160 FPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +     + +A  +   +               L 
Sbjct: 492 EQYLQEIFNPFFTTKRPGKGTGLGLSVSLGIAQAHGGTIEVASKPGKGSTFMLKLP 547


>gi|143631|gb|AAA22800.1| SpoIIJ protein (gtg start codon) [Bacillus subtilis]
          Length = 606

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     L S  L     L + I H+I +P+ AI   L+L+     G E     +    S
Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
              +I  + + LA     +V   + L  +       +          ++ S+  + I ++
Sbjct: 441 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYIN 500

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ ++          A  S+P GG V I + + ++    ++K  G          +I +
Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 559

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       +   ++  +  +   +          K
Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGTAFKISFPK 605


>gi|16078463|ref|NP_389282.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309268|ref|ZP_03591115.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313595|ref|ZP_03595400.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318517|ref|ZP_03599811.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322791|ref|ZP_03604085.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|3041695|sp|P16497|KINA_BACSU RecName: Full=Sporulation kinase A; AltName: Full=Stage II
           sporulation protein F; AltName: Full=Stage II
           sporulation protein J
 gi|143333|gb|AAA22664.1| protein kinase kinA [Bacillus subtilis]
 gi|2632220|emb|CAA10862.1| KinA protein [Bacillus subtilis]
 gi|2633770|emb|CAB13272.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 606

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     L S  L     L + I H+I +P+ AI   L+L+     G E     +    S
Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
              +I  + + LA     +V   + L  +       +          ++ S+  + I ++
Sbjct: 441 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYIN 500

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ ++          A  S+P GG V I + + ++    ++K  G          +I +
Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 559

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       +   ++  +  +   +          K
Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGTAFKISFPK 605


>gi|295694964|ref|YP_003588202.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
 gi|295410566|gb|ADG05058.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
          Length = 752

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54
            ++    + S  L  V  L + + H+I +P+ A+   ++LL      +    + ++  + 
Sbjct: 497 KRSEELMIKSEKLSVVGQLAAGVAHEIRNPLTALKGFVQLLQSNVHTKDEYFNIMLSELD 556

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KID 110
              +     L   +         D  + +  +  ++     +      +         + 
Sbjct: 557 RIELIINELLILAKPVDVQFQFHDLKVLIETVVALLRTQAILSNVQIATDCDPALPAVLC 616

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                 ++L+NL   A  ++PRGG++ +   Q+     +  +   G      +   ++ +
Sbjct: 617 DENRLKQVLVNLLKNAIEAMPRGGQIVVQARQEDDRTILIRVIDEGMGI-PEDSLPRLGE 675

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   +  ++  E        +  LL 
Sbjct: 676 PFFTTKEKGVGLGLTMSYQIIESHGGQMHFESEVGAGTTVEILLP 720


>gi|229132719|ref|ZP_04261565.1| hypothetical protein bcere0014_16490 [Bacillus cereus BDRD-ST196]
 gi|228650729|gb|EEL06718.1| hypothetical protein bcere0014_16490 [Bacillus cereus BDRD-ST196]
          Length = 483

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59
           + +++   +        L S I HD+ +PI AI   ++ + E        +         
Sbjct: 243 LKESVELQMQYEKNRKELLSNISHDLRTPITAIKGYVQGIKEGIARTPEQLDKYLTIIYY 302

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
            +  +  +         +D        E+V  +    D   ++    +   ++       
Sbjct: 303 KVFDMDQLIDELFLFSKLDLKEEPFQFEEVEINQYLSDCIEELQLELQDKGIAVRWDAQK 362

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160
                         +++ N+   +   + +             +     +K NG      
Sbjct: 363 DTSILVKGDREKLRRVITNIIWNSVKYMDKEEGYIGIRMTESIDYVTIYIKDNGVGIEEK 422

Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +    +           +       +  ++   +  E        L+  L+K
Sbjct: 423 ALPHIFERFYRADHSRNSKTGGSGLGLSIAHQIITQHGGDIWVESKKGKGTTLAFTLQK 481


>gi|317121133|ref|YP_004101136.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
 gi|315591113|gb|ADU50409.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
          Length = 969

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSS 57
            +       S  L A+  L +   H+I +P+ AI   ++L+     G     M ++    
Sbjct: 730 RELEQRARRSERLAAVGQLAAGAAHEIRNPLTAIKGFIQLIGRKLEGEAAGYMDIVLQEI 789

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWT-----GEKI 109
                 +  + L           + +G        +       +   V           +
Sbjct: 790 DRIEGIVNDLLLLARPPKPRLRPVDVGGLLARLVEMIRLDEAARGCTVELAVAGPLPPVV 849

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQI 167
               +  ++ LNL      ++P GG + +      + +     ++  G     PE   +I
Sbjct: 850 ADEAQLRQVFLNLVRNGLDAMPAGGVLRVRALYDRATDTVQVEVEDRGPGI-PPEHLNRI 908

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +       +   +   +  +        +  +L 
Sbjct: 909 FDPFFSTKEGGTGLGLAVSYGIVRNHGGHIDVDSEPGCGTRMRVVLP 955


>gi|159905754|ref|YP_001549416.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887247|gb|ABX02184.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 639

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 25/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
           N    L ++   + L + + H++ +P+ +I   +EL+ +         + + +Q+   + 
Sbjct: 404 NELKELDNLK--SELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNI 461

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108
           +     ++ M             Y   V+    + D+   +       + +++       
Sbjct: 462 VRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLQPIATEKNIKLKKEIEEIA 521

Query: 109 IDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           ID  ++R  ++L NL   A    P    + IS           +  +G      +   ++
Sbjct: 522 IDADKDRITQVLTNLIENAIKFSPANESIMISADLEDEHVHLRVTDHGAGIPKKD-MEKV 580

Query: 168 VDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +             +       +   +K  +  E           +L 
Sbjct: 581 FNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHIILP 633


>gi|90578555|ref|ZP_01234365.1| putative sensor histidine kinase [Vibrio angustum S14]
 gi|90439388|gb|EAS64569.1| putative sensor histidine kinase [Vibrio angustum S14]
          Length = 664

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLI 53
           + +     + S  L AL  L + I H+I +P+G I  ++EL+     +      E +  I
Sbjct: 415 LNQARSKLVVSEKLAALGELTAGIAHEINNPLGVILGNVELIQFELGDNTVQVQEELDAI 474

Query: 54  RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     +       +++   V+++ 
Sbjct: 475 HAQIDRIRNITRSLLQYSRQGGVQNEVTWHHLNQIVEESLTLVCSGTKKLSITFVVELNA 534

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLA 158
                    +  ++L+NL M    ++   G++ I  +D           I  +  +G   
Sbjct: 535 KCSVEVNRHQLLQVLVNLQMNGIHAMDDKGRLIIRTEDWIDEQGLSIGAIVRVIDHGCGI 594

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E   +I D    +      +       L  +    +  E         S  L
Sbjct: 595 -AKENLERIFDPFFTTRRSGTGLGLSVSQSLIEDIGGEITVESEVGQGTTFSVYL 648


>gi|156740269|ref|YP_001430398.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus castenholzii DSM 13941]
 gi|156231597|gb|ABU56380.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus castenholzii DSM 13941]
          Length = 407

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 71/246 (28%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           +       + S  L AL  + + + H++ +P+  I  + ELL       +   ++ I  S
Sbjct: 152 LRAMQAQLVQSSKLAALGEIVAGVAHELNNPLAIILGNAELLSPQRTPDDQRSVEQIIES 211

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEK 108
           +  A   ++ +         +       D+ + + D               V        
Sbjct: 212 AKRARRVVQSLATFARRGPIIKEWTAPTDLVERVIDLKRAALHAAGIALEVVCQPDLPML 271

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTIS------------------VQDSKNENIFS 150
                +  + LLNL + A  +L       +                   V++  +   F 
Sbjct: 272 WIDVPQMQQALLNLLINAEQALSGAPAPWMRLSVSRGPAEPPPLLPARAVENHGSFVRFD 331

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +  NG          ++ +  V +        +       +  ++  ++L     +    
Sbjct: 332 VADNGPGIPAH-IIERLFEPFVTTRPPGKGSGLGLAIAYGIVTQHSGQVLVASQPNQGTT 390

Query: 209 LSALLE 214
           +   L 
Sbjct: 391 VRIALP 396


>gi|90422347|ref|YP_530717.1| sensory histidine kinase AtoS [Rhodopseudomonas palustris BisB18]
 gi|90104361|gb|ABD86398.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 613

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 68/223 (30%), Gaps = 13/223 (5%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + +  L AL  L + + H+I +P+ +I   ++ L+      E  +           
Sbjct: 384 RTQVMRADRLAALGELMAGVAHEIRNPLTSIRGFVQFLEACDDVREWRRYSPEIIRQVDS 443

Query: 63  RLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
             + +       R        V     + ++ ++      V  R+ +      I+   E 
Sbjct: 444 LNRIITELLEFGRPRPPAIRPVQLNDLVHEVTRLAGHKANVQLRLALCAELPLIEADGEA 503

Query: 116 -AKILLNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
             + LLNL + A  +       ++   V+        ++  +G      +   +I D   
Sbjct: 504 LKQALLNLLINAMQAVETLGTVRIETHVEADGATVAVAISDDGAGILPEDL-EKIFDPFF 562

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +    V  +   +   +          V +  L +
Sbjct: 563 STKPQGTGLGLAMVHRIVDAHHGTVAMTSRPGAGTVATMRLPR 605


>gi|315029161|gb|EFT41093.1| PAS domain S-box [Enterococcus faecalis TX4000]
          Length = 609

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   E+           ++            L   R
Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
           +  G T          + +  + D   ++ +    + +++  +T   + +  +     ++
Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           L N+   A    P GG +T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599


>gi|312899665|ref|ZP_07758989.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|311293171|gb|EFQ71727.1| PAS domain S-box [Enterococcus faecalis TX0470]
          Length = 609

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   E+           ++            L   R
Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
           +  G T          + +  + D   ++ +    + +++  +T   + +  +     ++
Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           L N+   A    P GG +T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599


>gi|307268694|ref|ZP_07550063.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|306515006|gb|EFM83552.1| PAS domain S-box [Enterococcus faecalis TX4248]
          Length = 609

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   E+           ++            L   R
Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
           +  G T          + +  + D   ++ +    + +++  +T   + +  +     ++
Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           L N+   A    P GG +T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599


>gi|227518448|ref|ZP_03948497.1| histidine kinase [Enterococcus faecalis TX0104]
 gi|229546128|ref|ZP_04434853.1| histidine kinase [Enterococcus faecalis TX1322]
 gi|229550317|ref|ZP_04439042.1| histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|255973089|ref|ZP_05423675.1| sensory box histidine kinase VicK [Enterococcus faecalis T1]
 gi|255976128|ref|ZP_05426714.1| sensory box histidine kinase VicK [Enterococcus faecalis T2]
 gi|256618777|ref|ZP_05475623.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200]
 gi|256762197|ref|ZP_05502777.1| sensory box histidine kinase VicK [Enterococcus faecalis T3]
 gi|256852842|ref|ZP_05558212.1| VicK protein [Enterococcus faecalis T8]
 gi|256958686|ref|ZP_05562857.1| PAS [Enterococcus faecalis DS5]
 gi|256962216|ref|ZP_05566387.1| PAS [Enterococcus faecalis Merz96]
 gi|256965406|ref|ZP_05569577.1| PAS [Enterococcus faecalis HIP11704]
 gi|257077960|ref|ZP_05572321.1| PAS [Enterococcus faecalis JH1]
 gi|257082849|ref|ZP_05577210.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol]
 gi|257085547|ref|ZP_05579908.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|257086547|ref|ZP_05580908.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis D6]
 gi|257089604|ref|ZP_05583965.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis CH188]
 gi|257415811|ref|ZP_05592805.1| PAS [Enterococcus faecalis AR01/DG]
 gi|257422895|ref|ZP_05599885.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis X98]
 gi|293383243|ref|ZP_06629159.1| sensory box histidine kinase VicK [Enterococcus faecalis R712]
 gi|293387602|ref|ZP_06632148.1| sensory box histidine kinase VicK [Enterococcus faecalis S613]
 gi|294781109|ref|ZP_06746459.1| PAS domain S-box [Enterococcus faecalis PC1.1]
 gi|300860119|ref|ZP_07106207.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|307273519|ref|ZP_07554762.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|307274482|ref|ZP_07555665.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|307279012|ref|ZP_07560070.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|307288505|ref|ZP_07568491.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|307291177|ref|ZP_07571062.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|312903944|ref|ZP_07763113.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|312907169|ref|ZP_07766160.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|312909788|ref|ZP_07768636.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|312951045|ref|ZP_07769953.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|227074126|gb|EEI12089.1| histidine kinase [Enterococcus faecalis TX0104]
 gi|229304580|gb|EEN70576.1| histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|229308652|gb|EEN74639.1| histidine kinase [Enterococcus faecalis TX1322]
 gi|255964107|gb|EET96583.1| sensory box histidine kinase VicK [Enterococcus faecalis T1]
 gi|255969000|gb|EET99622.1| sensory box histidine kinase VicK [Enterococcus faecalis T2]
 gi|256598304|gb|EEU17480.1| hypothetical protein EFDG_00205 [Enterococcus faecalis ATCC 4200]
 gi|256683448|gb|EEU23143.1| sensory box histidine kinase VicK [Enterococcus faecalis T3]
 gi|256711301|gb|EEU26339.1| VicK protein [Enterococcus faecalis T8]
 gi|256949182|gb|EEU65814.1| PAS [Enterococcus faecalis DS5]
 gi|256952712|gb|EEU69344.1| PAS [Enterococcus faecalis Merz96]
 gi|256955902|gb|EEU72534.1| PAS [Enterococcus faecalis HIP11704]
 gi|256985990|gb|EEU73292.1| PAS [Enterococcus faecalis JH1]
 gi|256990879|gb|EEU78181.1| sensory box histidine kinase VicK [Enterococcus faecalis E1Sol]
 gi|256993577|gb|EEU80879.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|256994577|gb|EEU81879.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecalis D6]
 gi|256998416|gb|EEU84936.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis CH188]
 gi|257157639|gb|EEU87599.1| PAS [Enterococcus faecalis ARO1/DG]
 gi|257164719|gb|EEU94679.1| two component system sensor histidine kinase vicK [Enterococcus
           faecalis X98]
 gi|291079421|gb|EFE16785.1| sensory box histidine kinase VicK [Enterococcus faecalis R712]
 gi|291082934|gb|EFE19897.1| sensory box histidine kinase VicK [Enterococcus faecalis S613]
 gi|294451787|gb|EFG20239.1| PAS domain S-box [Enterococcus faecalis PC1.1]
 gi|300850937|gb|EFK78686.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497831|gb|EFM67363.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|306500580|gb|EFM69911.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|306504137|gb|EFM73349.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|306508876|gb|EFM77963.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|306509796|gb|EFM78823.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|310626197|gb|EFQ09480.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|310631000|gb|EFQ14283.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|310632664|gb|EFQ15947.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|311289746|gb|EFQ68302.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|315027747|gb|EFT39679.1| PAS domain S-box [Enterococcus faecalis TX2137]
 gi|315031522|gb|EFT43454.1| PAS domain S-box [Enterococcus faecalis TX0017]
 gi|315035062|gb|EFT46994.1| PAS domain S-box [Enterococcus faecalis TX0027]
 gi|315147676|gb|EFT91692.1| PAS domain S-box [Enterococcus faecalis TX4244]
 gi|315151378|gb|EFT95394.1| PAS domain S-box [Enterococcus faecalis TX0012]
 gi|315154082|gb|EFT98098.1| PAS domain S-box [Enterococcus faecalis TX0031]
 gi|315157369|gb|EFU01386.1| PAS domain S-box [Enterococcus faecalis TX0043]
 gi|315158432|gb|EFU02449.1| PAS domain S-box [Enterococcus faecalis TX0312]
 gi|315165411|gb|EFU09428.1| PAS domain S-box [Enterococcus faecalis TX1302]
 gi|315166595|gb|EFU10612.1| PAS domain S-box [Enterococcus faecalis TX1341]
 gi|315169876|gb|EFU13893.1| PAS domain S-box [Enterococcus faecalis TX1342]
 gi|315172773|gb|EFU16790.1| PAS domain S-box [Enterococcus faecalis TX1346]
 gi|315578293|gb|EFU90484.1| PAS domain S-box [Enterococcus faecalis TX0630]
 gi|323480427|gb|ADX79866.1| histidine sensor kinase [Enterococcus faecalis 62]
 gi|327534819|gb|AEA93653.1| sensor histidine kinase [Enterococcus faecalis OG1RF]
          Length = 609

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   E+           ++            L   R
Sbjct: 379 FVSNVSHELRTPLTSMRSYIEALSEGAWENPEIAPNFLKVTLEETDRMIRMINDLLNLSR 438

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
           +  G T          + +  + D   ++ +    + +++  +T   + +  +     ++
Sbjct: 439 MDSGNTHLQLEYVNFNELINFVLDRFDMMIENEQKNYKIRREFTKRDLWVELDTDKVIQV 498

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           L N+   A    P GG +T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 499 LDNILNNAIKYSPDGGVITCRLVETHNNVVFSISDQGLGIPKKDLGKVFERFYRVDKARA 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 559 RAQGGTGLGLAISKEVIRAHNGSIWVESTEGEGSTFYISLP 599


>gi|295400670|ref|ZP_06810647.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977251|gb|EFG52852.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 549

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLS 56
            +     + S  L A+  + + I H++ +P+ AI  + +LL            +     S
Sbjct: 311 RRIEAQLVQSGKLAAIGEMAAGIAHELNNPLTAILGNAQLLLRTAAKDDRSYKLLYDIYS 370

Query: 57  SMSAI-----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107
                       L F R              +  +  +I D I     +      +    
Sbjct: 371 CGRRCKTIIQNLLTFSRQDEYMFEDCSVNEAVEQVLGLIGDQIRKQNIIIQKKLDNSLEL 430

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV--------QDSKNENIFSLKINGNLAR 159
                ++  +I+LNL + A  +L     +   +        ++ K   + +++ NG    
Sbjct: 431 VEGNIQQIGQIVLNLLINAKDALEEVDVLEKVISIETKSVAEEEKKWVLLTIQDNGKGIE 490

Query: 160 FPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +     + +A  +   +               L 
Sbjct: 491 EQYLQEIFNPFFTTKRPGKGTGLGLSVSLGIAQAHGGTIEVASKPGKGSTFMLKLP 546


>gi|229103244|ref|ZP_04233927.1| hypothetical protein bcere0019_23940 [Bacillus cereus Rock3-28]
 gi|228680083|gb|EEL34277.1| hypothetical protein bcere0019_23940 [Bacillus cereus Rock3-28]
          Length = 590

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSEEIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  G        +  KN  I ++   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMLNGGKISIHIKEIHKNGVIINVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|322421181|ref|YP_004200404.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320127568|gb|ADW15128.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 543

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 16/229 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRL 55
            +     + S  L +L  L + I H+I +P+  I     L+      D V+    + +  
Sbjct: 287 TRMQAQLIRSEKLASLGELVAGIAHEINNPLTGILVFSSLIQSNPKLDPVLKNDIETVLR 346

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +K +           S   L  I     + +      Q              
Sbjct: 347 ETKRCAGIVKGLLEFARCAPPQKSPCSLNGISDAALELVRHQTLFQDVTIVRNYSGKVPR 406

Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165
               S +  ++L+N+F+ A  ++   G V +       + +    +  NG       +  
Sbjct: 407 LLLDSNQIEQVLVNMFVNAGQAVRGEGVVVVMTGVDPDEGQAFIRISDNGCGIPEANQDK 466

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +     +       +  E+  R+  +  +      + LL 
Sbjct: 467 IFDPFFTTKSNKGTGLGLSVSYGIVQEHGGRIDVQSEEGSGTTFTILLP 515


>gi|222099707|ref|YP_002534275.1| Sensor protein [Thermotoga neapolitana DSM 4359]
 gi|221572097|gb|ACM22909.1| Sensor protein [Thermotoga neapolitana DSM 4359]
          Length = 412

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 26/228 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM 67
           ++     + + H++ +P+ +IH   E L E  +E+       +++I   S      +  +
Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTHLINDL 243

Query: 68  RLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAK 117
                              L  + D    I   IA +  V++    E +          +
Sbjct: 244 LDLEKMEESSVEFEMKELDLCEVVDYVYRIVQPIAEENEVELEIDCENVTVKGNKERLIQ 303

Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +LLNL   A            KV +   D+ +  +  ++  G      E  ++I +    
Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWAVIEVEDTGPGI-PKEAQSRIFEKFFR 362

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    +    V  +   +  ++  E       ++   L K
Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDRHGGKIEVESEVGQGTLMRVYLPK 410


>gi|294499045|ref|YP_003562745.1| signal transduction histidine kinase with CheB and CheR activity
            [Bacillus megaterium QM B1551]
 gi|294348982|gb|ADE69311.1| signal transduction histidine kinase with CheB and CheR activity
            [Bacillus megaterium QM B1551]
          Length = 1186

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 18/229 (7%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 2    AKNICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
             K     L + ++++    L + I H+I +P+ ++   L+L+ +     +  + + +   
Sbjct: 959  RKQSEMMLKNSEMLSALGQLAAGIAHEIRNPLTSLKGFLQLMMQEETYKK--EYMDVMMS 1016

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWT---GE 107
                    +                             +    I  +  +   +      
Sbjct: 1017 EFNRLELIISELLILAKPEVVKYENKQINLILQDVCTLLHTQAILKNITISTDFEEKLPV 1076

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFT 165
               + ++  ++ +N+   +  ++   G + +  +     N+ +  +   G      ++ T
Sbjct: 1077 VHCIEKDMKQVFINMVKNSIEAMDDPGSILVVSKFDPDTNQVVVQVIDEGKGM-PKDRLT 1135

Query: 166  QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +      +       +   +K  +  +  +     +   L 
Sbjct: 1136 RITEPFYTTKEKGTGLGLMVSHKIISNHKGSISYDSEEGKGTTVEIRLP 1184


>gi|197116682|ref|YP_002137109.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197086042|gb|ACH37313.1| sensor histidine kinase, HAMP domain-containing, nonconserved
           putative heme-binding site [Geobacter bemidjiensis Bem]
          Length = 494

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 19/223 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKF 66
            +  L ++  + + I H+I +P+  I  ++ +L +    ED  +Q+I           K 
Sbjct: 252 RADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPEDGRIQIIGEVLEQISRLDKT 311

Query: 67  MRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +     +     +     DI            +     +   ++  +     +  +  +I
Sbjct: 312 VNDLLFFGKPTVAEPTCTDINSALKKILVFASQHRGGKNIEKRLELSENLPTVYVDPKQI 371

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEKFTQIVDGN 171
                 +   ++            S        +     +   G     P+   +I    
Sbjct: 372 QQVFLNLFLNAVQAMQAGGTLTVKSGLAKVEGVDMVQVRVTDTGQGI-PPQILEKIFTPF 430

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       L  ++  RL     D      +  L 
Sbjct: 431 FTTKAQGTGLGLAISHRLIEQHGGRLSVVSQDGMGTTFTVELP 473


>gi|321315157|ref|YP_004207444.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis BSn5]
 gi|320021431|gb|ADV96417.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus subtilis BSn5]
          Length = 606

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     L S  L     L + I H+I +P+ AI   L+L+     G E     +    S
Sbjct: 381 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 440

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
              +I  + + LA     +V   + L  +       +          ++ S+  + I ++
Sbjct: 441 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYIN 500

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ ++          A  S+P GG V I + + ++    ++K  G          +I +
Sbjct: 501 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 559

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       +   ++  +  +   +          K
Sbjct: 560 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGTAFKISFPK 605


>gi|291483934|dbj|BAI85009.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 609

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 76/226 (33%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     L S  L     L + I H+I +P+ AI   L+L+     G E     +    S
Sbjct: 380 KQTEELMLKSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEGNEHYFDIVFSELS 439

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
              +I  + + LA     +V   + L  +       +          ++ S+  + I ++
Sbjct: 440 RIELILSELLMLAKPQQNAVKEYLNLKKLIGEVSALLETQANLNGIFIRTSYEKDSIYIN 499

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ ++          A  S+P GG V I + + ++    ++K  G          +I +
Sbjct: 500 GDQNQLKQVFINLIKNAVESMPDGGTVDIIITEDEHSVHVTVKDEGEGIPEK-VLNRIGE 558

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       +   ++  +  +   +          K
Sbjct: 559 PFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGTAFKISFPK 604


>gi|238920097|ref|YP_002933612.1| sensory histidine kinase AtoS [Edwardsiella ictaluri 93-146]
 gi|238869666|gb|ACR69377.1| signal transduction histidine-protein kinase AtoS [Edwardsiella
           ictaluri 93-146]
          Length = 590

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 70/228 (30%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     L  +  L  L  L + + H++ +P+ AI   ++++ +        +       
Sbjct: 355 RKEAQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIIRQQTALPAHQEYLSVVLK 414

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKID 110
            I   +      L F R        V   + + +   +++   +        +       
Sbjct: 415 EIDSINKVIQQLLDFSRPRQSQWQRVSLNVLIEEALILVQTSGVQARITFHCALDSTLPA 474

Query: 111 LSRER---AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +R    ++LLN+ + A  ++         + Q +  +   ++  +G          +
Sbjct: 475 IVADRELLKQVLLNILINAVQAISARGEIRIRTWQPTPAQQAVTITDSGCGIDIA-LQKK 533

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + ++  +            + +L 
Sbjct: 534 IFDPFFTTKAAGTGLGLALSQRIINAHRGDIDVASTPGGGTAFTLMLP 581


>gi|303248906|ref|ZP_07335154.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302489705|gb|EFL49640.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 480

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 65/231 (28%), Gaps = 21/231 (9%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------- 51
           N    L +  + AL    + + H++ +P+  I  + + L E   E               
Sbjct: 235 NQEDLLQARKMAALGTFTAGVAHELNNPLNNIALTADALREDYAETLDADGRELVDDITG 294

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108
               ++      L F R        +D    +     ++++ I        +    +   
Sbjct: 295 QADRAADIVRNLLDFSRTERPPLVLLDPAEVVRSSLNLVKNQIQAAGVCLETEYAPRLPA 354

Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFT 165
                R   ++L+N+   A  + P GG V +             ++   G          
Sbjct: 355 IRGDMRSLQQVLVNIVQNAAQATPPGGVVRVETCLGRDAGHIRINVADTGPGIAPS-VRE 413

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +    +        +       L   +  R+  E  +    V +  L 
Sbjct: 414 HIFEPFFTTKGVGKGTGLGLAVAYSLVKRHGGRIEVECPEGGGAVFTVRLP 464


>gi|328952443|ref|YP_004369777.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452767|gb|AEB08596.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 614

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 73/228 (32%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIR 54
           + ++    L S    A+    + + H+I +P+  I      L+      +     +++I 
Sbjct: 385 LRQSHERLLRSERFAAVGEAAAYVSHEIKNPLMVIGGFARQLERNPEVSQTASSKLRIII 444

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTG 106
                    L  +R              L ++ Q +   +    +           +   
Sbjct: 445 DEVRRLENFLGELRDFTRPAPPFKQEADLNELVQDVAAMMGEATQEMGVKIETKLANTLP 504

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                + +  ++L+NL   A  +   GG +TIS    +++   S+   G   + PE   Q
Sbjct: 505 LVNFDANQMKQVLINLVKNALEATDSGGVITISTSAWEDQVRLSVTDTGKGIQ-PEIMPQ 563

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +      +    +  +  ++   +  E   D     +  L 
Sbjct: 564 IFNPFFTTKKTGTGLGLAVINKIIEDHNGAITVESSKDRGTTFTISLP 611


>gi|255283685|ref|ZP_05348240.1| phosphate regulon sensor protein [Bryantella formatexigens DSM
           14469]
 gi|255265750|gb|EET58955.1| phosphate regulon sensor protein [Bryantella formatexigens DSM
           14469]
          Length = 476

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK++        L   L S + H++ +P+  I + +E++ +  +E    + ++      
Sbjct: 244 MAKSLK---EQEALRKRLTSDVTHELRTPVANISSYMEMMADGVMEPTT-ERMQSCYEEL 299

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIE-------------QVIEDFIAVDKRVQVSWTGE 107
                 +          D  + L   E                +      K         
Sbjct: 300 QRLSGLICNLERLRQVEDENLVLDKTEVDLLELSQNVLGNFESQLLEKHLKGQVSGDAAV 359

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    ++L NL   A      GG + + ++D+KN  I  ++ NG      +    F
Sbjct: 360 IFADKGRIQQVLTNLVSNAIKYSNDGGMIHVVIEDTKNSGIIHVEDNGIGIPQEDLGRIF 419

Query: 165 TQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +           I    V  +   +   +  E  +      + +L K
Sbjct: 420 ERFYRTDKSRNRKTGGAGIGLTIVRTIVQAHGGNISVESKEGKGSCFTIILPK 472


>gi|300087268|ref|YP_003757790.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527001|gb|ADJ25469.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 568

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            K     + +  L ++  L + I H+I +P+  I    ELL E  + + +   +      
Sbjct: 327 RKMQEQLMVTNRLASVGELAAGIAHEINNPLTGILGFSELLMENNLPENLRADVETIHSE 386

Query: 60  AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDL 111
           A          L F R        +D    +  +  +   +    + +V      +   +
Sbjct: 387 ANRAAGIIKNLLVFARQHHQVREELDVNEVVERVLTLRAYEANLNNIQVVRHLAPDIPMI 446

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS--------VQDSKNENIFSLKINGNLARFPEK 163
             +  ++      +   +     K                          +G     P+ 
Sbjct: 447 IGDHFQLQQVFLNLVINAEYFMLKAHNKGTLTVATSYDRETERVRLVFTDDGPGV-APDI 505

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ D    +        +       +  ++   +  E            L 
Sbjct: 506 QARLFDPFFTTKDVGQGTGLGLSISHGVIKQHGGTIRVESQPGQGASFIIELP 558


>gi|239828009|ref|YP_002950633.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808302|gb|ACS25367.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 585

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 66/220 (30%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +PI +I    E L      +    +  + +I   S      ++ +     
Sbjct: 362 FVANVSHELKTPITSIKGFAETLLDGAMKDEQTLEYFLSIIWKESERLQTLVQDLLDLSK 421

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                           D L  +  + Q   +   +D  +    +      +    +I +N
Sbjct: 422 IEQQGFRLHLETVDLADLLREIAVMFQQKSEEKGIDFYLHAPKSVYMEGDANRIKQIFIN 481

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ST 175
           L   A    P+GGKV + +++ + E +  +K  G      E   +I +            
Sbjct: 482 LITNALTYTPKGGKVELMIEEKEKEILVHVKDTGIGIDEQEIP-RIFERFYRVDKARGRN 540

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  L   +   +  +         +    K
Sbjct: 541 SGGTGLGLAIVKHLVEAHHGHITVKSTVGKGTTFTVHFPK 580


>gi|24379906|ref|NP_721861.1| putative histidine kinase CovS; VicK-like protein [Streptococcus
           mutans UA159]
 gi|24377885|gb|AAN59167.1|AE014984_2 putative histidine kinase CovS; VicK-like protein [Streptococcus
           mutans UA159]
          Length = 450

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 25/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + + V        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALTESVAPSFIKVSLDETNRMMRMITDLLSLSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERA 116
           +    +     L         I D     +                  +      + +  
Sbjct: 270 IDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMT 329

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           +++ N+   A    P GGKVTI++Q +  + I S+   G      +    F +    +  
Sbjct: 330 QVIDNILNNAIKYSPDGGKVTITMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKA 389

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +     +      + +L 
Sbjct: 390 RSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP 432


>gi|150402473|ref|YP_001329767.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033503|gb|ABR65616.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 639

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 66/234 (28%), Gaps = 27/234 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
           N    L ++   + L + + H++ +P+ +I   +EL+ +         + + +Q+   + 
Sbjct: 404 NELKELDNLK--SELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQKKCLQVADDNI 461

Query: 58  MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +     ++            + +          +  + +  + +     +    +V    
Sbjct: 462 VRLRRLIESMLDLSKIERGELEMYREKVNLKGIVCDVIEYLKPLATEKNIKLNREVE-EI 520

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L NL   A    P    + IS           +  +G      +   +
Sbjct: 521 TIEADKDRITQVLTNLIENAIKFSPANESIMISGVLEDEHVHLKVTDHGAGIPKKD-MEK 579

Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +   +             +       +   +K  +  E           LL 
Sbjct: 580 VFNRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHKGSIWVESELGKGSTFHILLP 633


>gi|134299174|ref|YP_001112670.1| sensory histidine kinase AtoS [Desulfotomaculum reducens MI-1]
 gi|134051874|gb|ABO49845.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 614

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 65/226 (28%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
           M            L AL  L + + H+I +P+ +I   ++  L       + +  I    
Sbjct: 388 MRLEEQMRRQ-ERLAALGKLVTGVAHEIKNPLTSISGYIQFWLKSKSPTTKSLNTIYREV 446

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------ID 110
                 +  +      T +V S + L +    + +F        + +T            
Sbjct: 447 RRLDSIVNKLLFFSRPTHAVMSKVSLNEFVDRVLNFFKETHADNICFTICCEENLPKVYI 506

Query: 111 LSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++L+N+      ++P      V      S       ++  G      E   +I 
Sbjct: 507 DPDQVEQVLMNIIYNGVQAMPEGGEISVETGSSKSDTMIYVEIRDTGFGI-ENELLEKIF 565

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +  R+  +       ++  L  
Sbjct: 566 DPFFTTRAKGTGLGLTIADEIIRSHGGRIEIKSQVGVGTIVRVLFP 611


>gi|323465649|gb|ADX69336.1| Sensor protein [Lactobacillus helveticus H10]
          Length = 618

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++   +E L      +  I  + +++ +  +   I  +  +    
Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVTQQETSRMIRMINDLLSLS 438

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112
                V  +             I     + V                            +
Sbjct: 439 RMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDT 498

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
            +  +++ N+   A    P GG +T+ +  S+   I S+   G      +    F +   
Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPRKDLGKIFDRFYR 558

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +   +  R+  +  +         L 
Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|260892898|ref|YP_003238995.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
 gi|260865039|gb|ACX52145.1| multi-sensor signal transduction histidine kinase [Ammonifex
           degensii KC4]
          Length = 418

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 59/219 (26%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ AI   +E L++  +E      E +Q+I   +   I  ++ +     
Sbjct: 197 FVANVSHELRTPLTAIKGFVEALEDGALEDRETAQEFLQIIASETERLIHLVEDLLKLSR 256

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER---AKILL 120
              R  F     V+    + +I  V            +V        +  +     ++ +
Sbjct: 257 LENRQTFLRRQEVNLNELIHNIALVWRRRAEEKGLAFEVDLPPGLPLVLGDPELLTQVFV 316

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           NL   A    P G         S       ++  G                         
Sbjct: 317 NLIDNALKYTPVGRVRIRGEYQSG-WVRIEVEDTGIGIPQDCLPRVFERFFRVDRARSRA 375

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +  ++  E            L 
Sbjct: 376 SGGTGLGLSIVKHIVELHGGKVGVESELGKGSRFWVYLP 414


>gi|194014588|ref|ZP_03053205.1| sporulation kinase A (Stage II sporulation protein J) [Bacillus
           pumilus ATCC 7061]
 gi|194013614|gb|EDW23179.1| sporulation kinase A (Stage II sporulation protein J) [Bacillus
           pumilus ATCC 7061]
          Length = 609

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 78/225 (34%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53
            +     L S  L     L + I H+I +P+ AI   L+L+       +   E    +L 
Sbjct: 384 KQTEELMLRSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLIKPKTKDRDQYFEIVFSELS 443

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKI 109
           R+  + + + +           ++D    + ++  ++E    ++  +     +       
Sbjct: 444 RIEIILSELLMLAKPQQTASMQTLDLKKIISEVTALLETQANLNGILMNTSEIEEDLLMN 503

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +NL   A  S+P GGKV I+ +  ++    +++  G          +I +
Sbjct: 504 GDQNQLKQVFINLIKNAVESMPDGGKVDITAKAERDGIHVTIRDEGVGIPES-VMKRIGE 562

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +      +       +   +   +  +   +   V   +  
Sbjct: 563 PFLTTKEKGTGLGLMVTFNILENHNGTIRVDSHPEKGTVFHIMFP 607


>gi|304406471|ref|ZP_07388127.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344529|gb|EFM10367.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 624

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 65/224 (29%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQ 51
            KN    ++S  L     L + I H+I +P+ ++   L+L+            I    + 
Sbjct: 357 KKNEELLINSEKLYVAGQLAAGIAHEIRNPLTSLKGFLQLISTGRSNGRNYFDIMKSELN 416

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKID 110
            I       ++  K       +      L     + +        +  V+          
Sbjct: 417 RIESIVSELLMLSKPQVYELTHHDMRQVLNDTVMLLEAQASLHNTEIVVETDPAPLWTFG 476

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +  +  ++ +N+   A  ++  GGK+ I+ +      +  +   G      E+  ++   
Sbjct: 477 VGNQIKQVFINVIKNAIEAMEDGGKIVITSRLEDGNVVTRIIDQGPGI-PKEQLAKMGQP 535

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   ++ R+                 
Sbjct: 536 FYTTKDRGTGLGLMVTFKIVDNHQGRIQAHSEMGEGATFVISFP 579


>gi|297569313|ref|YP_003690657.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925228|gb|ADH86038.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 597

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 61/241 (25%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       S  L +   + + H++ +P+ AI    +LL +  ++    +  R    S+
Sbjct: 195 LRKANARLEESSRLKSEFLANMSHELRTPMNAITGFAQLLADTSLDTTQQEYCRTIRQSS 254

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 + +       +   +       + E  IA+  R     
Sbjct: 255 ATLLALINDILDLAKIEAGRLELEIVAFDLDELLESVAAMFSLSIREKGIAIQVRRDQGL 314

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKINGNL 157
               +  S    ++L NL   A                        +    F ++ +G  
Sbjct: 315 PRAYLGDSHRLRQVLTNLVGNAVKFTESGGVELLVESVAPPEAARQEQWLRFVVRDSGIG 374

Query: 158 ARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                           DG+         +       L      R+  E ++      S  
Sbjct: 375 IPPHRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGRIEVESLEGQGSCFSFT 434

Query: 213 L 213
           +
Sbjct: 435 I 435


>gi|116748299|ref|YP_844986.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697363|gb|ABK16551.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Syntrophobacter fumaroxidans MPOB]
          Length = 490

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 68/223 (30%), Gaps = 19/223 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            S  L AL  + + + H+I +P+G I ++ ELL++   ++   +   +    +      +
Sbjct: 255 QSERLAALGEMIAGVSHEIRNPLGIIRSTAELLNDRIEDERQKRFSSIIVEESTRLNDIL 314

Query: 68  RLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                +            IE+        +  +F  ++  V+  +      L  +   + 
Sbjct: 315 TEFLDFARPKAIRPAQCRIEEILERNLKVLEAEFQRLNVTVERDYRTGAYSLEADCDLLF 374

Query: 120 LNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLARFPEKFTQIVDGN 171
                +   +L    +  +    ++         +    +K  G+     +   +I +  
Sbjct: 375 RAFVNLLANALQAMPQGGMLQVRTEVLNGKGGPRQVEVQIKDTGHGI-PSDVRKKIFNPF 433

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +    V  +   +   +     +     +   L 
Sbjct: 434 FTTREKGTGLGLAIVQNIVDNHNGDIEVVSREGEGTAIIIRLP 476


>gi|290580114|ref|YP_003484506.1| putative histidine kinase [Streptococcus mutans NN2025]
 gi|254997013|dbj|BAH87614.1| putative histidine kinase [Streptococcus mutans NN2025]
          Length = 450

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 25/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + + V        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALTESVAPSFIKVSLDETNRMMRMITDLLSLSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERA 116
           +    +     L         I D     +                  +      + +  
Sbjct: 270 IDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMT 329

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           +++ N+   A    P GGKVT+++Q +  + I S+   G      +    F +    +  
Sbjct: 330 QVIDNILNNAIKYSPDGGKVTVTMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKA 389

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +     +      + +L 
Sbjct: 390 RSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP 432


>gi|94968417|ref|YP_590465.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Candidatus Koribacter versatilis Ellin345]
 gi|94550467|gb|ABF40391.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Candidatus Koribacter versatilis Ellin345]
          Length = 550

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 72/209 (34%), Gaps = 12/209 (5%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRL-------KFMRL 69
           + + I H+I +P+ +I  S ++L     + +E   L  + +  +            + R 
Sbjct: 321 MAAGIAHEIRNPLTSIAGSTKMLASMSDLNEEQQTLANIVTRESDRLNSIITDFLFYARD 380

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVA 126
                  +D +  L D   +++    ++  ++  +  +K     +     ++  NL   A
Sbjct: 381 KKFELREIDVIPVLNDTLVLLQHRPGMNVAIERRFEADKALCMADGDKLKQVFWNLSDNA 440

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++P GG +T++V+             G     P+   +I +           +    V
Sbjct: 441 CRAMPDGGTLTVTVRPDHEVWRVHFGDTGPGMTGPQL-EKIFEPFQTEFYGGTGLGLAIV 499

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +   ++ ++               L++
Sbjct: 500 YQIVQGHEGKISVRSAPGRGTEFMLQLKR 528


>gi|14600272|gb|AAK71320.1|AF393849_2 sensor protein CovS [Streptococcus mutans]
          Length = 450

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 25/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + + V        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALTESVAPSFIKVSLDETNRMMRMITDLLSLSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERA 116
           +    +     L         I D     +                  +      + +  
Sbjct: 270 IDNQTSHLDVELTNFTAFMNYILDRFDQIQSQQSTNKVYEIIRDYPDKSVWIEIDTDKMT 329

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           +++ N+   A    P GGKVT+++Q +  + I S+   G      +    F +    +  
Sbjct: 330 QVIDNILNNAIKYSPDGGKVTVTMQTTDTQLILSISDQGLGIPKKDLPLIFDRFYRVDKA 389

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +     +      + +L 
Sbjct: 390 RSRAQGGTGLGLAIAKEIVKQHKGFIWANSEEGEGSTFTIVLP 432


>gi|172056681|ref|YP_001813141.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989202|gb|ACB60124.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 464

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A+ +     S+    +      + + H++ +P+  I    E++ +  ++++        
Sbjct: 217 LAETLNKMAESLGEVDEQRKEFLANVSHELRTPLSYIRGYTEMMQDKALDEKTRDQYYQI 276

Query: 57  SMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                 RL+ +                      V S +    + ++     A    +   
Sbjct: 277 IERETERLQRLVNDLLDLAQLERDSYPMTKQPLVFSQVLEDVVYRMEPIAKAKGVSIITD 336

Query: 104 WTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +   +I    +    +++ NL   A    P    + +S +    + I S++  G     P
Sbjct: 337 FDPSQIVLGDNDRLEQVIGNLLDNALRYTPASKHIYLSTKTDGEQTICSIRDEGEGI-PP 395

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++                   +       +   +   +  E +      +   L 
Sbjct: 396 EHLERLTKRFYRVDKSRTRKDGGTGLGLAITKHIIDRHDGTISFESVLGQGTTVLITLP 454


>gi|302389532|ref|YP_003825353.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200160|gb|ADL07730.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 576

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 62/226 (27%), Gaps = 22/226 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             L +   + + H++ +P+ +I   +E L      + G+    + +I   +      +  
Sbjct: 349 EKLRSEFLANVSHELRTPLTSIKGFVETLLEGAYKDPGLAKRFLSIIDAEAGRLYRLINN 408

Query: 67  MR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +                  + +      +   E  +++              +       
Sbjct: 409 LMDLSKIETNQLKLRIEDVSAAELINEVIIIFENRLKEKGLKFSTDIPKDLPKVKADPDW 468

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++ +NL   A      GG+V I  +   +   F +   G      +    F +    +
Sbjct: 469 LRQVFINLLDNAIKYTQSGGRVWIEAEPKGDVVEFRVCDTGIGIPEEDLPRVFERFYRVD 528

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    +    V  +       +  E   +        L++
Sbjct: 529 KARSPEMGGSGLGLAIVKHIVRAFGGDIRVESRVNQGSKFIFTLKR 574


>gi|154244983|ref|YP_001415941.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159068|gb|ABS66284.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 581

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 66/229 (28%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIE--------DEVM 50
           +            L  L    + I H+I +P+G I  S EL+                V+
Sbjct: 349 LRDREAALRHRAQLATLGQAAAVIAHEIRNPLGIIKTSAELVRRKTPMAPSEDRLMMFVL 408

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
             ++         L + R        +D +  +              + + +        
Sbjct: 409 DEVQRIDRLVKELLDYARPPQCAAVPLDLVTSIVQPALDFMAPELRRRDITLAARLPDHP 468

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      + L+NL + A  +   GG V + V   ++  +  ++ NG      +   
Sbjct: 469 VPIQGDKDLLHQALMNLLINAMDAAGDGGHVIVRVGQEEDSAVLHVEDNGPGV-PQDVRA 527

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  V + ++   +    V   A  +   +          + +  L 
Sbjct: 528 ALFDPFVTTKVNGTGLGLATVRSTAEAHGGAVSHADAPGGGAIFTLRLP 576


>gi|288554555|ref|YP_003426490.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           pseudofirmus OF4]
 gi|288545715|gb|ADC49598.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           pseudofirmus OF4]
          Length = 510

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 73/219 (33%), Gaps = 6/219 (2%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +       S  L  V  L + I H+I +PI  +    +L++    ++ +   ++     
Sbjct: 287 KRTEAQLRQSEKLKVVGELAAGIAHEIRNPITVLSGFTQLMENSHHKEMMQAELKRMDGI 346

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
               L   +        +     + ++  + E      K            +  +     
Sbjct: 347 VEELLILAKPRAAELAPISIKELIEEVILLFESICMNQKINVNWNNNHNPLIYGDYNRLK 406

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++L+N+F  A  ++   G + I++   K++    ++ +G           I      +  
Sbjct: 407 QVLINVFKNAIEAIEYKGCIEITLSTIKDQVCIHIENDGPPIPSEMLCE-IGSPFYTTKE 465

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +       +  E++  L  +  ++  VV++  L +
Sbjct: 466 TGTGLGLMISSSIMKEHEGSLSIKNREESGVVVTLTLPR 504


>gi|218290986|ref|ZP_03495034.1| histidine kinase [Alicyclobacillus acidocaldarius LAA1]
 gi|218239068|gb|EED06272.1| histidine kinase [Alicyclobacillus acidocaldarius LAA1]
          Length = 420

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 68/229 (29%), Gaps = 20/229 (8%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56
           M K +     +S++   A L + I H+I +P+      L+L  E     +   ++L    
Sbjct: 192 MRKKLQEFEKVSAL---AQLSAGIAHEIRNPLTTARGFLQLFAERCDDKDRAYLELTISE 248

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEK 108
                  L+             + + + +I + +  F+  +  +                
Sbjct: 249 LDRIRELLEDFMGLCRPDREDVAEVDMAEIARSVHRFLVPEASLCDIAFELNVPAHPIPA 308

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ 166
                   ++L+NL   A  +        + +   + ++  +  +  NG      E   +
Sbjct: 309 AVRPAHIKQVLINLVQNALQACRGQAHAVVRLDVAEKEDRVLVQVVDNGCGI---ENMDR 365

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I      +      +  +    +   +   +           ++  + K
Sbjct: 366 IFRPFYTTKSTGTGLGLFVCKHIIESHGGSISVCSQVGAGTTVTVEIPK 414


>gi|212639830|ref|YP_002316350.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561310|gb|ACJ34365.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 729

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 71/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
            K +   L   D   +V  L + I H+I +P+ A+   ++LL      +    +    +I
Sbjct: 497 KKEMEEQLRKSDTLSVVGQLAAGIAHEIRNPMTALKGFIQLLQGSIGNDCEQYNMYFHVI 556

Query: 54  RLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                             K   + +        +    D+  V      +          
Sbjct: 557 MSELKRIESIITEFLVLAKPQAVHYERGDVAKIMQETVDLLSVQATMHNIQIEATYEPVP 616

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 ++  ++ +N+   A   +P+GG +T+SV         +++  G+     +K  +
Sbjct: 617 PIYCDPKQLKQVFINILKNAIEVMPKGGTITVSVAHVAEGVRIAVRDEGSGI-PKDKIKK 675

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +      +       +  E++ R+  E            L 
Sbjct: 676 LGEPFYTTKERGTGLGLMVSYKIIEEHQGRIDVESEVGVGTTFYITLP 723


>gi|302391635|ref|YP_003827455.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302203712|gb|ADL12390.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 592

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 22/226 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIRLKF 66
             +     S + H++ +P+ +I   +E L +         +  +Q+I+  +      +  
Sbjct: 365 EQIRTEFVSNVSHELRTPLTSIKGYVETLLDERDCEPGVRERFLQVIKDETDRLERLITD 424

Query: 67  MRL--------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +                 V+    + ++   V+         ++V    +   +   R +
Sbjct: 425 LLNLSQLESASDSFDQELVNLNQVIENVLTTVMPKADNKGIDLKVDVPVDITGIKGSRGQ 484

Query: 118 ILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
           +                 GG+V I V + ++     +   G      +    F +    +
Sbjct: 485 LERLYINLVDNGIKYTSEGGQVKIKVYEDEDRVWSEIIDTGMGIPEEDLPRIFERFYRVD 544

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    +    V  +   +   +  E   +        L K
Sbjct: 545 KTRSRKLGGTGLGLSIVKHILERHNGGIEVESKVEEGTKFIFWLPK 590


>gi|224535375|ref|ZP_03675914.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523016|gb|EEF92121.1| hypothetical protein BACCELL_00237 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 497

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--SM 58
           + + +     S +L ++  + + H+I +P+ AI     LL    ++     +I  +    
Sbjct: 261 LNEALRKARHSDELKSIFLANMSHEIRTPLNAIVGFSSLLAHGDLDLTKDDIIEFTSLIE 320

Query: 59  SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                L  +                    ++     L +I       +     + +   G
Sbjct: 321 KNSQLLMVLISDILDLSKIESNTMEFNFCNISLHQVLNEIGSAQRMNMKKGVELLLDLPG 380

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           ++I +S +     +++ NL   A      G         + N     ++  G      E 
Sbjct: 381 QEITISTDPTRLSQVINNLVNNAIKFTSEGNICIGYRPATSNRVKIFVEDTGTGM-AKEV 439

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I D   +         +       +A   K ++            + +L 
Sbjct: 440 IEHIFDRFYKGDAFKQGTGLGLAICRTIAERFKGKIEVASTPGKGTRFTIILP 492


>gi|253701288|ref|YP_003022477.1| histidine kinase [Geobacter sp. M21]
 gi|251776138|gb|ACT18719.1| histidine kinase [Geobacter sp. M21]
          Length = 490

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 67/227 (29%), Gaps = 15/227 (6%)

Query: 3   KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +     + S  + +  LL + + H+I +P+ AI     +L E       + + ++ I   
Sbjct: 257 EARNEAIRSEKMASVGLLAAGMAHEIGTPLAAIMGYSGILSEELAGDPEKSDYLRRITEE 316

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------GEK 108
           S      ++ +       GS    I +  + + + + +     +++              
Sbjct: 317 SKRIDRIVRGLLDYARPKGSQREEIEVLPLLEKVVELLEAQGALKLLEVTVEAEPSLPRL 376

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++L+NL M A  ++PRGGK+ +            +   G             
Sbjct: 377 HADPYQLEQLLINLIMNAKDAMPRGGKLQLKGLSVGGGVAIEVADTGEGMPPEHLPLVFD 436

Query: 169 DGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       +A      L  +            L 
Sbjct: 437 PFFTTKEPGKGTGLGLAIAARIAESCGGSLTVQSELGEGSRFRLTLP 483


>gi|218780263|ref|YP_002431581.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761647|gb|ACL04113.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 494

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 68/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           + K     L +  + +L  L + + H + +P+G I    +L+ E              ++
Sbjct: 252 LHKTQVQLLQAEKMASLGKLAAGVAHQLNNPLGGIILFAQLILEEYELPEGAVADLKRIL 311

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106
              + S       L+F R         D    +     ++E+       + V        
Sbjct: 312 DDAQRSRDIVKELLEFARQTRQEVRPHDLNRAISRTLFLLENQSVFQNIIIVKNLAEDLP 371

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164
                 ++   + +N+ + A  ++   G++ ++             +   G      +  
Sbjct: 372 PVPADIQQLNHVFMNIILNAAEAMEGRGELRVTSYLIPGRKIAAIEISDTGPGI-PKDVL 430

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +        +    V  +   +  R++     D   V    L 
Sbjct: 431 PHVFEPFYTTKEQGKGTGLGLSLVYGIVESHHGRIMASNNHDGGAVFRIELP 482


>gi|295704365|ref|YP_003597440.1| signal transduction histidine kinase with CheB and CheR activity
            [Bacillus megaterium DSM 319]
 gi|294802024|gb|ADF39090.1| signal transduction histidine kinase with CheB and CheR activity
            [Bacillus megaterium DSM 319]
          Length = 1186

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 18/229 (7%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 2    AKNICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
             K     L + ++++    L + I H+I +P+ ++   L+L+ +     +  + + +   
Sbjct: 959  RKQSEMMLKNSEMLSALGQLAAGIAHEIRNPLTSLKGFLQLMMQEETYKK--EYMDVMMS 1016

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWT---GE 107
                    +                             +    I  +  +   +      
Sbjct: 1017 EFNRLELIISELLILAKPEVVKYENKQINLILQDVCTLLHTQAILKNITISTDFEEKLPV 1076

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFT 165
               + ++  ++ +N+   +  ++   G + +  +     N+ +  +   G      ++ T
Sbjct: 1077 VHCIEKDMKQVFINMVKNSIEAMDDPGSILVVSKFDPDTNQVVIQVIDEGKGM-PKDRLT 1135

Query: 166  QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +      +       +   +K  +  +  +     +   L 
Sbjct: 1136 RISEPFYTTKEKGTGLGLMVSHKIISNHKGSISYDSEEGKGTTVEIRLP 1184


>gi|260102099|ref|ZP_05752336.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
 gi|260084086|gb|EEW68206.1| sensory box histidine kinase VicK [Lactobacillus helveticus DSM
           20075]
          Length = 619

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++   +E L      +  I  + +++ +  +   I  +  +    
Sbjct: 380 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVAQQETSRMIRMINDLLSLS 439

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112
                V  +             I     + V                            +
Sbjct: 440 RMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDT 499

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
            +  +++ N+   A    P GG +T+ +  S+   I S+   G      +    F +   
Sbjct: 500 DKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPRKDLGKIFDRFYR 559

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +   +  R+  +  +         L 
Sbjct: 560 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 606


>gi|229075084|ref|ZP_04208085.1| hypothetical protein bcere0024_23970 [Bacillus cereus Rock4-18]
 gi|228708015|gb|EEL60187.1| hypothetical protein bcere0024_23970 [Bacillus cereus Rock4-18]
          Length = 590

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSEEIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  G        +  KN  I S+   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMLNGGKISIHIKEIHKNGVIISVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|229116155|ref|ZP_04245546.1| hypothetical protein bcere0017_24440 [Bacillus cereus Rock1-3]
 gi|228667272|gb|EEL22723.1| hypothetical protein bcere0017_24440 [Bacillus cereus Rock1-3]
          Length = 590

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSEEIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  G        +  KN  I S+   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMLNGGKISIHIKEIHKNGVIISVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 567


>gi|158121175|gb|ABW17001.1| two-component sensor histidine kinase [Bacillus subtilis]
          Length = 579

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 72/238 (30%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M +          +     + + H++ +PI +I    E L     ++     E + +I  
Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396

Query: 56  SSMSAIIRLKFMRLAFGYTGSV---------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S      ++ +                    + +       +          +Q++   
Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFDPAKMLGEIETLLKHKADEKGISLQLNVPK 456

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   +S +     ++ LNL   A    P GG V I+V+  + +    +  +G   +  E 
Sbjct: 457 DPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPRERDIQIEVADSGIGIQKEEI 516

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +                 +    V  L   ++ ++          V +  L++
Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSEPGRGTVFTVTLKR 573


>gi|227902982|ref|ZP_04020787.1| histidine kinase [Lactobacillus acidophilus ATCC 4796]
 gi|227869225|gb|EEJ76646.1| histidine kinase [Lactobacillus acidophilus ATCC 4796]
          Length = 618

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++   +E L      +  I  + +++ +  +   I  +  +    
Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVTQQETGRMIRMINDLLSLS 438

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112
                V  +           + I     + V                            +
Sbjct: 439 RMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALWVEIDT 498

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
            +  +++ N+   A    P GG +T+ +  ++N  I S+   G      +    F +   
Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIPRKDLAKIFDRFYR 558

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +   +  R+  +  +         L 
Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|194014530|ref|ZP_03053147.1| sporulation kinase C [Bacillus pumilus ATCC 7061]
 gi|194013556|gb|EDW23121.1| sporulation kinase C [Bacillus pumilus ATCC 7061]
          Length = 436

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSS 57
             N    + +  L     + + I H++ +P+ +++  L+L+        D    +     
Sbjct: 200 RSNQQLQMQAQKLAVAGQIAAGIAHEVRNPLTSVNGFLQLMKTQYPERTDYFDIIFSEIK 259

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----- 112
               +  + + LA         +     +EQVI           +               
Sbjct: 260 RIDFVLSELLVLAKPQAVHFQEVQLHELLEQVITLLKTNAVLSNIDLKQPFKRQDAGAIL 319

Query: 113 ---RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +NL   A  ++P GG + IS +   NE   +++  G      +   +I D
Sbjct: 320 ADANQMKQLFINLIKNAIEAMPEGGSIYISTEKVLNEWKITIQDEGKGMSEEDI-QKIYD 378

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +       +  ++  R+               L 
Sbjct: 379 PFFSTKKEGTGLGLTICATILKDHHGRMDVSSELGKGTAFHIYLP 423


>gi|58336427|ref|YP_193012.1| histidine kinase [Lactobacillus acidophilus NCFM]
 gi|58253744|gb|AAV41981.1| putative histidine kinase [Lactobacillus acidophilus NCFM]
          Length = 618

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++   +E L      +  I  + +++ +  +   I  +  +    
Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVTQQETGRMIRMINDLLSLS 438

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112
                V  +           + I     + V                            +
Sbjct: 439 RMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKDHKKKYTIKRELGNQALWVEIDT 498

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
            +  +++ N+   A    P GG +T+ +  ++N  I S+   G      +    F +   
Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIPRKDLAKIFDRFYR 558

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +   +  R+  +  +         L 
Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|311030852|ref|ZP_07708942.1| Signal transduction histidine kinase, nitrogen specific, contains
           PAS/PAC domain [Bacillus sp. m3-13]
          Length = 422

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 69/226 (30%), Gaps = 13/226 (5%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57
           + K     ++   L  V  L + I H+I +P+ +I   ++L+          ++++    
Sbjct: 196 LKKTEQLLVTKEKLSVVGELSAGIAHEIKNPLTSIKGFIQLIQLSGKANKNHVEMVLSEI 255

Query: 58  MSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 +  + +            +        +  +E              +       
Sbjct: 256 DRINDIVSELLVLSKPQTKELTLISILEVLQYVIKLVENEAAINNISFSIENIGPDTMVR 315

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIV 168
                  ++ +NL   +  ++P GG V I+  +++       +K +G           I 
Sbjct: 316 GDKNNLKQVFINLIKNSMEAMPDGGTVMITGLRETDGRKSIQVKDDGIGISSS-NMDSIG 374

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    S      +       +  E++  +  E  + +   ++  L 
Sbjct: 375 NPFFTSKEKGMGLGLTITKKIIEEHQGNIRIESKEGNGTTVTIDLP 420


>gi|302871717|ref|YP_003840353.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574576|gb|ADL42367.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 576

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 71/226 (31%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L +  I+D+      + +I +     +  +  
Sbjct: 343 ERVRSDFVANVSHELKTPLTSIKGFVETLKDGAIDDKDVALKFLNIIEVEVERLVRLIND 402

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIE------------DFIAVDKRVQVSWTGEKIDLSRE 114
           +        +   ++    + + +                     ++V    E       
Sbjct: 403 LLYLSEIENAAMPILDEKVVVKEVVLESIELLKIKAEKKNIQFVDIKVPDGLEMNIYRDW 462

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             +I +NL   A       GKV ++V+ S    +  +K  G      E   +I +     
Sbjct: 463 LKQIFINLIDNAIVYNKENGKVWVTVEKSNGMVVIKVKDTGIGIPEKEI-ERIFERFYRV 521

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +    V  +      ++  +  + +    + ++ 
Sbjct: 522 DKGRSRKLGGTGLGLSIVKHIVELYGGKIWVKSQEGYGSEFTVIIP 567


>gi|260892382|ref|YP_003238479.1| histidine kinase [Ammonifex degensii KC4]
 gi|260864523|gb|ACX51629.1| histidine kinase [Ammonifex degensii KC4]
          Length = 555

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 14/210 (6%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           L + + H++ +P+ +I   L+LL    D+   E   ++++       +  ++        
Sbjct: 339 LATALFHEVRNPLTSIKGVLQLLYEKRDDQDPERRYLEVVLGELDRTVRIIRNFLYFARP 398

Query: 74  TGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMV 125
                    L       +  V     A    V          +  +     + +LNL   
Sbjct: 399 KDCHPVPTDLDALLRDILLMVELQASAARVEVSYDPHPGTPVILVDPDLIKQAVLNLAQN 458

Query: 126 AHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           A  ++P+GGK+   +        I  ++  G     PE F ++ +    +      +   
Sbjct: 459 ALQAMPQGGKLFFRLYPQGSEWVIIEVEDTGTGI-PPEHFPRLGEAFFTTRRGGTGLGLA 517

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +A  +  R+  E  +         + 
Sbjct: 518 VSYQIAKMHGGRIEVESEEGKGSKFRIKIP 547


>gi|225174149|ref|ZP_03728148.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169934|gb|EEG78729.1| multi-sensor signal transduction histidine kinase [Dethiobacter
           alkaliphilus AHT 1]
          Length = 587

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 68/226 (30%), Gaps = 22/226 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I   +E L     ++   +D  + +I   ++     +  
Sbjct: 361 EQMRRDFVANVSHELRTPMTSIQGFVEALLDGLAEDKESQDRYLNVILDETVRLNRLVSD 420

Query: 67  MRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRE 114
           +            +      L  L              + + V     +           
Sbjct: 421 LLDLSRLEKGEVGWPMETIELKPLFADVASKLQPQVAKQELSVDIDTPENISAVTGNRDR 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++L+NL   A +  P GGK+T+S +D  ++    +   G      E    + +    +
Sbjct: 481 IQQVLINLLGNAISFTPPGGKITLSAKDVGDKVEVQVTDTGMGIPPEEQDKIWERFHKVD 540

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +     +    V  +   +   +  E            L+K
Sbjct: 541 KARTRSFGGTGLGLSIVKQIVDAHGGDVGLESTPGKGSTFYFTLKK 586


>gi|89096702|ref|ZP_01169594.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088717|gb|EAR67826.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 458

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 58/230 (25%), Gaps = 19/230 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           M + +  N  +        S + HD  SP+  I    ELL          + +++I   S
Sbjct: 230 MQRQLQHNDEARKS---FISNVSHDFQSPLMNIQGYAELLKLDVNETERVQYLEIINDES 286

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------TGE 107
                  K + +      +   +                  +  +               
Sbjct: 287 KRLSHLTKQLLIMTSLDQNAYPMKVSEVRADKQIKQAIRRYQWLIEEKEIEVSYNLEHCV 346

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
               +     +  NL   A      G  + I ++  + + + + K  G      E    F
Sbjct: 347 FKYDAELMTNVWDNLMTNAIKYSSPGDSMWIGLEKRETDLVITFKDTGAGMSEKEMDQIF 406

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +         +    V  +   +  ++          V +  L 
Sbjct: 407 DRFYRVDSARKKGGTGLGLSIVKQIIDLHDGKISVASKPGEGTVFTITLP 456


>gi|46199663|ref|YP_005330.1| phosphate regulon sensor protein phoR [Thermus thermophilus HB27]
 gi|46197289|gb|AAS81703.1| phosphate regulon sensor protein phoR [Thermus thermophilus HB27]
          Length = 373

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 57/230 (24%), Gaps = 19/230 (8%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
            +   L       A L   + H++ +P+ A+    E L +         + +++ ++   
Sbjct: 135 RLAEALEKVEKTRAELIGTVAHELRTPLAALQGYAEGLMDGVLSKEKAAEGILREVKAMR 194

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKI 109
                     R+           +    + +          + +             +  
Sbjct: 195 RLVEDLSLVSRVEAKAVEIRPKPLDPKGLLEEALARFQSAFQAKGVALSLEAQDPLPQVW 254

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQ 166
                  ++L NL   A    P+GG+V +          F +   G        P  F +
Sbjct: 255 ADEERVLQVLANLLTNALRHTPQGGEVRLRAFRQGEAVAFQVADTGPGIPEEHLPHIFER 314

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +           +       L      R+  E         +  L 
Sbjct: 315 FYRVDKARSRKEGGSGVGLTVAKGLVEAMGGRIFVESRVGEGTTFTFTLP 364


>gi|296332102|ref|ZP_06874566.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675503|ref|YP_003867175.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150873|gb|EFG91758.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413747|gb|ADM38866.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 579

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 73/238 (30%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M +          +     + + H++ +PI +I    E L     ++     E + +I  
Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396

Query: 56  SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S      ++ +                    + +       +          +Q++   
Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLQLNLPK 456

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           + + +S +     ++ LNL   A    P GG V I+V   + +    +  +G   +  E 
Sbjct: 457 DPLYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVTPREKDIQIEVADSGIGIQKEEI 516

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +                 +    V  L   ++ ++  +       V +  L++
Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVKSEPGRGTVFTVTLKR 573


>gi|260062752|ref|YP_003195832.1| putative two-component system sensor kinase/response regulator
           fusion protein [Robiginitalea biformata HTCC2501]
 gi|88784320|gb|EAR15490.1| putative two-component system sensor kinase/response regulator
           fusion protein [Robiginitalea biformata HTCC2501]
          Length = 941

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 61/235 (25%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           + +     L  +D L +   + I H+  +P+  I   +E L++   E    + +R+   +
Sbjct: 421 LKQRSNLELQELDRLKSGFFANISHEFRTPLTLIKGPIEKLEQNPGETLSREEVRMIRRN 480

Query: 60  AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSW 104
                      L   R+  G      +   +    +                      + 
Sbjct: 481 TQRVLGLVNQLLDLSRIDQGELRLKPTEGDVFKCLRAAASAFNSHAAQRRMDYSVRIPTD 540

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
           +        +  +++ NL   A      GG V              +  +G      +  
Sbjct: 541 SLWASFDRDKIEQVVYNLLSNAFKFCEDGGTVAFEATYKDELLTMQVADSGRGIPSGDLP 600

Query: 163 -KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +     G +    +   I       L       +  E  +      +  L 
Sbjct: 601 YIFDRFYQAQGGMTRDREGSGIGLALSRDLVELMDGTITVESEEGEGARFTVQLP 655


>gi|329765363|ref|ZP_08256943.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138269|gb|EGG42525.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 442

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 79/210 (37%), Gaps = 5/210 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIRLKFMR 68
             ++++  L +RI HD+ +P+  I   +E + +    +++ +  +     +       + 
Sbjct: 36  ERLEVIGELSARIAHDLRNPLAVIQCGVEAIKQDVKCDEKTIARLERMQRAVGRMTHQIN 95

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---ILLNLFMV 125
               +T     ++    I  +I++ I+ +  V++    E I +  ++ K   +  N+   
Sbjct: 96  EVLDFTKPRSLVLSQCHILDIIKEVISNNSNVEIKSLSENIKIICDKEKLKVVFNNMITN 155

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A+ ++     ++I   + KN  I  +  +G+     +   +I +    +      +    
Sbjct: 156 ANHAITDEDIISIQTSEDKNNIIIQISDSGHGI-SADILPKIFEPLFTTKQKGTGLGLTS 214

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  E+   +            + +L K
Sbjct: 215 CKSIIQEHGGTINVSSEIGKGTTFTIILPK 244


>gi|296329975|ref|ZP_06872459.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305676700|ref|YP_003868372.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153014|gb|EFG93879.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305414944|gb|ADM40063.1| two-component sensor histidine kinase (paired with YycF) [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 611

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 25/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58
                +          + + H++ +P+  + + LE L E   E+       + + +  + 
Sbjct: 368 TEQEKMDQER--REFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETE 425

Query: 59  SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             I  +  +           +    +   V  +  + D  ++ ++      R        
Sbjct: 426 RMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMTKEQHVEFIRNLPDRNLY 485

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK-- 163
                 +  ++L N+   A    P GG VT S+  ++ E     S+K  G      +   
Sbjct: 486 VEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK 545

Query: 164 -FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +      +    +       +   +   +  + I+     ++  L 
Sbjct: 546 VFDRFYRVDKARTRKLGGTGLGLAIAREMVQAHGGDIWADSIEGKGTTITFTLP 599


>gi|228990433|ref|ZP_04150398.1| hypothetical protein bpmyx0001_11950 [Bacillus pseudomycoides DSM
           12442]
 gi|228768959|gb|EEM17557.1| hypothetical protein bpmyx0001_11950 [Bacillus pseudomycoides DSM
           12442]
          Length = 465

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     +  ++LV    +   H+I +P+  I   + LL E  I+++      +       
Sbjct: 240 ERQQNEIQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKHIQEQDQFYFSVIEQEIKR 299

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                       K   +        D +  +  I +   +   +   +Q+      I  S
Sbjct: 300 INEIVSEFLILGKPTAIIEKKYDVRDIIKEVSLIIRSEANLHNIIFTLQLPDHPVHIRCS 359

Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           ++   +++LN+   A  ++  G  +TI V  +K      +   G           +    
Sbjct: 360 KDHMKQVVLNITKNAIEAMSSGDVLTIQVTSNKEHAQLHIIDTGKGI-PKHIQKHLFHPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S      +       +      +++ +   +    +   L 
Sbjct: 419 FTSKDTGTGLGLVICKRIIEMYDGQIVIDSTKNKGTTVHIKLP 461


>gi|16081092|ref|NP_391920.1| two-component sensor histidine kinase YycF [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221312017|ref|ZP_03593864.1| hypothetical protein Bsubs1_21801 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221316342|ref|ZP_03598147.1| hypothetical protein BsubsN3_21707 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221321255|ref|ZP_03602549.1| hypothetical protein BsubsJ_21660 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221325538|ref|ZP_03606832.1| hypothetical protein BsubsS_21816 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321313601|ref|YP_004205888.1| two-component sensor histidine kinase YycF [Bacillus subtilis BSn5]
 gi|23396979|sp|Q45614|YYCG_BACSU RecName: Full=Sensor histidine kinase yycG
 gi|1064813|dbj|BAA11299.1| yycG [Bacillus subtilis]
 gi|2636587|emb|CAB16077.1| two-component sensor histidine kinase [YycF] [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|291486677|dbj|BAI87752.1| hypothetical protein BSNT_06199 [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019875|gb|ADV94861.1| two-component sensor histidine kinase (YycF) [Bacillus subtilis
           BSn5]
          Length = 611

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 25/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58
                +          + + H++ +P+  + + LE L E   E+       + + +  + 
Sbjct: 368 TEQEKMDQER--REFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETE 425

Query: 59  SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             I  +  +           +    +   V  +  + D  ++ ++      R        
Sbjct: 426 RMIRLVNDLLQLSKFDSKDYQFNREWIQIVRFMSLIIDRFEMTKEQHVEFIRNLPDRDLY 485

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK-- 163
                 +  ++L N+   A    P GG VT S+  ++ E     S+K  G      +   
Sbjct: 486 VEIDQDKITQVLDNIISNALKYSPEGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEK 545

Query: 164 -FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +      +    +       +   +   +  + I+     ++  L 
Sbjct: 546 VFDRFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLP 599


>gi|322419014|ref|YP_004198237.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
 gi|320125401|gb|ADW12961.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. M18]
          Length = 396

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 66/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +++     + S  L +L  L + + H+I +P+ +I   ++L+     E E  + +     
Sbjct: 166 LSRAQAEVVQSEKLASLGYLSAGMAHEIRNPLNSIALFVQLIKGGLEEPERQEYVEKILK 225

Query: 59  SAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   +      +                   L      +        R   +    
Sbjct: 226 EVDRIDNILGKLLDASKRPKFEISEVRLDRILEHTLEAFTPQLRQKRIKVVRDYRNIPPA 285

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I  NLF+ +   +P  G +T+ +    +     +   G      E    I
Sbjct: 286 IKADPMEIEQIFTNLFLNSIHVMPEEGTLTVELDQDADYIKLRVSDTGPGI-PAENLPNI 344

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V+ +    K ++  E  D      +  L 
Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKTYKGKIEVEKSDPTGTTFAVRLP 391


>gi|311070583|ref|YP_003975506.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310871100|gb|ADP34575.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 611

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 71/221 (32%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+  + + LE L E   E+       + + +  +   I  +  +     
Sbjct: 380 FVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETERMIRLVNDLLQLSK 439

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 +    +   +  +  + D  ++ ++      R     +        +  ++L N
Sbjct: 440 FDSKDYQFNREWIHFIRFISLIIDRFEMTKEQHVEFIRQLPDRSLYVEIDQDKITQVLDN 499

Query: 122 LFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +   A    P GG VT SV  ++ E     S+K  G      +   +I +          
Sbjct: 500 IISNALKYSPEGGHVTFSVNVNEEEELLYISVKDEGIGIPKKD-MEKIFERFYRVDKART 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +       +   +   +  + I+     ++  L 
Sbjct: 559 RKLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 599


>gi|332096264|gb|EGJ01267.1| signal transduction histidine-protein kinase atoS [Shigella
           dysenteriae 155-74]
          Length = 403

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 74/226 (32%), Gaps = 16/226 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 179 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDLIHQEYLSVVLK 238

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 239 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 298

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 299 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 357

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I D    +      +       + + ++  +    +  +    + +
Sbjct: 358 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLI 403


>gi|321315121|ref|YP_004207408.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis BSn5]
 gi|320021395|gb|ADV96381.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis BSn5]
          Length = 500

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + ++       ++L+  L +   H+I +P+  I   ++LL +      +     +I    
Sbjct: 273 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 331

Query: 58  MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108
                         K     +      D +  +  I     +   V+  +Q         
Sbjct: 332 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 391

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++LN+      S+P GGK+TIS+     + I  +  NG      E    I 
Sbjct: 392 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 450

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V S      +       +       +  E        ++  L 
Sbjct: 451 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLP 496


>gi|296329691|ref|ZP_06872176.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674088|ref|YP_003865760.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153189|gb|EFG94053.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412332|gb|ADM37451.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 486

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + ++       ++L+  L +   H+I +P+  I   ++LL +      +     +I    
Sbjct: 259 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 317

Query: 58  MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108
                         K     +      D +  +  I     +   V+  +Q         
Sbjct: 318 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 377

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++LN+      S+P GGK+TIS+     + I  +  NG      E    I 
Sbjct: 378 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 436

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V S      +       +       +  E        ++  L 
Sbjct: 437 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLP 482


>gi|221309230|ref|ZP_03591077.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313558|ref|ZP_03595363.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318480|ref|ZP_03599774.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322753|ref|ZP_03604047.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 500

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + ++       ++L+  L +   H+I +P+  I   ++LL +      +     +I    
Sbjct: 273 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 331

Query: 58  MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108
                         K     +      D +  +  I     +   V+  +Q         
Sbjct: 332 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 391

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++LN+      S+P GGK+TIS+     + I  +  NG      E    I 
Sbjct: 392 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 450

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V S      +       +       +  E        ++  L 
Sbjct: 451 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLP 496


>gi|16078430|ref|NP_389249.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|81341921|sp|O31671|KIND_BACSU RecName: Full=Sporulation kinase D; AltName: Full=Sensor histidine
           kinase D
 gi|2633737|emb|CAB13239.1| histidine kinase phosphorylating Spo0A [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 506

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + ++       ++L+  L +   H+I +P+  I   ++LL +      +     +I    
Sbjct: 279 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 337

Query: 58  MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108
                         K     +      D +  +  I     +   V+  +Q         
Sbjct: 338 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 397

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++LN+      S+P GGK+TIS+     + I  +  NG      E    I 
Sbjct: 398 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 456

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V S      +       +       +  E        ++  L 
Sbjct: 457 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTEVTITLP 502


>gi|228907066|ref|ZP_04070930.1| hypothetical protein bthur0013_12390 [Bacillus thuringiensis IBL
           200]
 gi|228852570|gb|EEM97360.1| hypothetical protein bthur0013_12390 [Bacillus thuringiensis IBL
           200]
          Length = 508

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 60/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  +++   +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGNIFIDSTENNGTTVHIEIP 504


>gi|108763090|ref|YP_633515.1| response regulator/sensor histidine kinase HsfB [Myxococcus xanthus
           DK 1622]
 gi|15076966|gb|AAK82997.1|AF285783_2 histidine kinase HsfB [Myxococcus xanthus]
 gi|108466970|gb|ABF92155.1| response regulator/sensor histidine kinase HsfB [Myxococcus xanthus
           DK 1622]
          Length = 527

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           M + +   + +  + A+  L   + H+I +P+G I    +L+         + E + LI 
Sbjct: 290 MTRRL---IETEKMAAVGQLAGGVAHEINNPLGGILAFAQLMSRDAGRSDADLESLGLIE 346

Query: 55  LSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104
            S++     ++ +     ++        D    + D   +    +     V++       
Sbjct: 347 ESALRCKRIVESLLKFSRHSRVEDRRPFDLSKCVEDAAVLFRAQLKSMPTVELTLGLADG 406

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163
             +      + A+++LNL      SLP    K+ +      +   F++   G        
Sbjct: 407 LPKVYGDPGQLAQVVLNLLQNGLQSLPTREGKLKLVTGREGDRCFFAVTDTGTGIEEKHL 466

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I + +  +    +   +       +  ++      +         +  L 
Sbjct: 467 P-RIFEPSFTTKAPGEGTGLGLSIAYRIVQDHGGSFHVDTEVGEGSCFTVFLP 518


>gi|258404234|ref|YP_003196976.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257796461|gb|ACV67398.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 525

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 68/225 (30%), Gaps = 15/225 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M KN    L  + L+  + +++ H+I +P+ +I  S   L        + + + +    +
Sbjct: 301 MEKN---RLERLSLLGQMAAQVAHEIKNPLNSIKGSAHYLKANFEGRILHEFLHVIEEES 357

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEKI 109
                 +     ++          D+  ++ D + +  R                     
Sbjct: 358 ERLSDILTDFLNFSKPGVPHFEREDLNALVRDTLRLASRDTQDGVVRLDSTLDPQLPPFW 417

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  + LLNL + A  ++  GG V +S     +     ++ +G      E    I  
Sbjct: 418 FDYAKLRQSLLNLVLNAVHAVREGGTVQVSTIAQPDRGQLVIQDDGQGITAQEL-ENIFK 476

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    + +    V      +K  +  +            L 
Sbjct: 477 PFYTTKNRGNGLGLSIVEQYIRAHKGTIDVDSQPGQGTTFIITLP 521


>gi|253700986|ref|YP_003022175.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
            M21]
 gi|251775836|gb|ACT18417.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
            M21]
          Length = 1146

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 71/264 (26%), Gaps = 51/264 (19%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------------- 42
            +       L    + ++  L + + H+I +P+G I ++L  L++                
Sbjct: 880  LKATHSQLLQQEKMASIGQLAAGVAHEINNPMGFISSNLSTLEKYLERISSFITLQSAKV 939

Query: 43   ----------------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
                                          +  E M               F R+    T
Sbjct: 940  MPNATAEVLAELTQARQTLKVDYILQDAPDLVAESMDGANRVRKIVQNLKTFSRVDDAET 999

Query: 75   GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKILLNLFMVAHASLPR 132
              VD    L     +  + +     +   +           +  ++ LN+ + A  ++  
Sbjct: 1000 MYVDLNDCLESTVTIAWNELKYKTTLNRDYGELPPVKCFPHQLNQVFLNILVNAAHAIEV 1059

Query: 133  GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA 190
             G+VTI+ +        ++   G      E   +I +    +        +       + 
Sbjct: 1060 QGEVTITTRCLGETVKVTISDTGCGI-PDEIKERIFEPFFTTKEVGKGTGLGLSISYDIV 1118

Query: 191  HENKIRLLPEIIDDHNVVLSALLE 214
             ++   +  +         S +L 
Sbjct: 1119 KKHGGSIEVKSTPGKGTTFSVVLP 1142


>gi|229102033|ref|ZP_04232746.1| hypothetical protein bcere0019_11980 [Bacillus cereus Rock3-28]
 gi|228681420|gb|EEL35584.1| hypothetical protein bcere0019_11980 [Bacillus cereus Rock3-28]
          Length = 478

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 58/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 253 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 312

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 313 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 372

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI + D++      +   G           +    
Sbjct: 373 KDHMKQVVLNITKNAIEAMTSSDTLTIVITDNETHAQLQIIDTGKGI-PKHIQKHLFHPF 431

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 432 FTNKDTGTGLGLVICKRIVEMYDGHIFIDSKENEGTTVHIEIP 474


>gi|152974863|ref|YP_001374380.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023615|gb|ABS21385.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 498

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 63/223 (28%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           +     +  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNEMQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYTLEQDQFYFSVIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111
               +    +    T  ++    + DI Q +   I  +  +                   
Sbjct: 333 INEIVSEFLILGKPTAIIEDKYDIRDIMQEVSLIIRSEANLYNITFTLYLPDHPVYIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI +  +++     +   G           +    
Sbjct: 393 KDHMKQVILNITKNAIEAMSSGDTLTIIITSNQDHAQLHIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S      +       +      R+L +  +     +     
Sbjct: 452 FTSKDTGTGLGLVICKRIIEMYGGRILIKSKEAQGTTVQIEFP 494


>gi|78358574|ref|YP_390023.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78220979|gb|ABB40328.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
          Length = 410

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 63/241 (26%), Gaps = 37/241 (15%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----------------VGIEDEVM 50
            +  +  +  L + + H+I +P+ A+    E +                       D ++
Sbjct: 163 QAEKMATMGVLAAGVAHEINNPLTAVTGFAEGIRRRLPKLRGLVDDQLFTDFQEYTDTIL 222

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105
           +            L F R +      +     + +   ++ +       ++V+       
Sbjct: 223 KECLRCQDIVQTLLTFSRPSSAEFSQLSLNSVVSETVWLLHNHFKKHHNIKVNLNLDETV 282

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----------DSKNENIFSLKING 155
                   +  +++LNL   A  S+   G                   ++     +   G
Sbjct: 283 PHIFGDEAQLKQVVLNLLTNALDSMSETGNKDRCYFSGVLAVETAPFGESGAKLIVSDTG 342

Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P+   ++ +    +        I       +  ++   +     +      +  L
Sbjct: 343 CGI-PPDNIDKLFEPFFTTKNVGKGIGIGLSTCYSIVRKHGGEITVTSTEGKGSQFTVTL 401

Query: 214 E 214
            
Sbjct: 402 P 402


>gi|307634870|gb|ADI84366.2| sensor histidine kinase response regulator, PAS and PAC
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 863

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 27/237 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           M K +   L +  L +L  L   I HD  + +  I  ++ L    LD      E +    
Sbjct: 485 MEKEL---LKAAKLESLGVLAGGIAHDFNNLLTVIMGNISLALTQLDSPDKVKEYLAKSE 541

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +S  A    + +         V +   +  + +   +F      V+  ++        +
Sbjct: 542 KASFRAQDLTRQLLTFAKGGAPVKTASSITTVIRESAEFAMRGSSVRCEFSISSDLWPVD 601

Query: 115 RA-----KILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157
                  ++L NLF+ A+ ++P GG +    ++                   S+   G  
Sbjct: 602 IDAGQISQVLHNLFINANQAMPAGGVIQTHCENVVIGPEEALPLQAGRYVKVSIIDQGVG 661

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   ++ D    +      +       +  ++   +  E  +         L 
Sbjct: 662 I-PEENLGKVFDPYFTTKAQGSGLGLASSFSIVTQHGGTITVESAEGRGTTFHIFLP 717


>gi|239787669|emb|CAX84136.1| Sensor protein [uncultured bacterium]
          Length = 895

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEV-------MQ 51
           + ++   N+ +  L   L S I HD+ +P+  I    E  L+    + +           
Sbjct: 650 LTRDAQVNMEAERLRNSLLSAISHDLRTPLTVISGMAEAILMASPPLSEPHTGLALAIRD 709

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEK 108
            +  ++      L   R+  G          L ++  +  +  A       V+V   GE 
Sbjct: 710 QVARTTTMVGNLLDLARMQMGQVVLQREWQTLEEVIGLSMERSAPSLTGHVVRVDLPGEM 769

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
             +  +     +   NL   A    P G  +TI  +        +++ +G          
Sbjct: 770 PLIEMDTGLMERAFNNLLENAARHTPPGSAITIVAKVRGMFAEIAVEDDGPGIPPGMEKK 829

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +   G +E  +    +    V  +   +   +  E            L 
Sbjct: 830 LFDKFTRGKMEKPVSGFGLGLTIVRSIVEAHGGMIRAENRTGGGARFVVSLP 881


>gi|39996629|ref|NP_952580.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983510|gb|AAR34903.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 803

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 27/237 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           M K +   L +  L +L  L   I HD  + +  I  ++ L    LD      E +    
Sbjct: 425 MEKEL---LKAAKLESLGVLAGGIAHDFNNLLTVIMGNISLALTQLDSPDKVKEYLAKSE 481

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +S  A    + +         V +   +  + +   +F      V+  ++        +
Sbjct: 482 KASFRAQDLTRQLLTFAKGGAPVKTASSITTVIRESAEFAMRGSSVRCEFSISSDLWPVD 541

Query: 115 RA-----KILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157
                  ++L NLF+ A+ ++P GG +    ++                   S+   G  
Sbjct: 542 IDAGQISQVLHNLFINANQAMPAGGVIQTHCENVVIGPEEALPLQAGRYVKVSIIDQGVG 601

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   ++ D    +      +       +  ++   +  E  +         L 
Sbjct: 602 I-PEENLGKVFDPYFTTKAQGSGLGLASSFSIVTQHGGTITVESAEGRGTTFHIFLP 657


>gi|219669249|ref|YP_002459684.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219539509|gb|ACL21248.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 610

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 64/221 (28%), Gaps = 12/221 (5%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQLI 53
                L  ++LV  + + I H+I +P+  +   L+L+ E   +             +   
Sbjct: 383 TEMVRLDRLNLVGQMAAGIAHEIRNPMTTVRGYLQLMGEKTQDMGQKSTLHFMIEELDRA 442

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  +   K  +  +        L  L  + +          R       +     +
Sbjct: 443 NTIIKEFLTLAKSHKPNYQIFNLNTLLQNLHPLIEADSFTQNKQIRFTPGDIPDIEISPK 502

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  +++LN+      ++  GG +TI      +  + ++K  G+     E   ++      
Sbjct: 503 DITQMVLNICRNGLEAMSEGGCLTIQTYKKNHTVVLAIKDEGHGI-PKELLEKLGTPFFT 561

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +A  +  R+                 
Sbjct: 562 TKESGTGLGLSICYKIAKSHNARIDVLSSP-EGTQFLISFP 601


>gi|294494881|ref|YP_003541374.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
 gi|292665880|gb|ADE35729.1| GAF sensor signal transduction histidine kinase [Methanohalophilus
           mahii DSM 5219]
          Length = 621

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 70/235 (29%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           AK++  ++ +        + + H++ +P+ AI    +LL      +   + ++ S     
Sbjct: 380 AKSLEEDVKTTK--TEFIATMSHELRTPLNAIIGFSQLLSSNRYGNMNEKELKYSFSILK 437

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSW 104
                  +    +  +  ++  ++  I   +++++ ++             +       +
Sbjct: 438 GGKHLLNLINDILDFSKIHSNKMELNIETINLKEICDEIKTFITPLATKKGITVEYNNKF 497

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +      +  +I+ NL   A    P  GKV++ +         S+  +G      +  
Sbjct: 498 DIDINLDKLKFIQIMSNLLSNAVKFTPDKGKVSVDIDFVAEYVQVSVTDSGIGIPEHKLN 557

Query: 165 TQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +         +    V      +   +  E         +  + 
Sbjct: 558 MIFDPFIQADSSNTRKYGGTGLGLALVKEYVEMHGGTIWVESELGKGSTFTFTIP 612


>gi|126651966|ref|ZP_01724158.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126591235|gb|EAZ85344.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 621

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 64/235 (27%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +     +   +      S + H++ +P+  + + LE L      +  I    + + +  
Sbjct: 379 TEQEKIEMDRRE----FVSNVSHELRTPLTTMRSYLEALADGAWKDENIAPTFLNVTQTE 434

Query: 57  SMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWT 105
           +   I  +  +   +   +   +    +          I   +           +    +
Sbjct: 435 TERMIRLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSKSDKVQFARLFPETS 494

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 + +  +++ N+   A    P GG +        +     +  +G      E   
Sbjct: 495 FYVEIDTDKVTQVIDNIISNAIKYSPDGGNIRFGFTGQGDMLKVMISDDGMGI-PKENVG 553

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           ++    +       +   +  ++  E  +     +   L 
Sbjct: 554 RIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608


>gi|218778398|ref|YP_002429716.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759782|gb|ACL02248.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 750

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 63/231 (27%), Gaps = 26/231 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAI 61
             ++ +  L   + HD+ + +  I    ELL E            +E++Q    +     
Sbjct: 378 QKVESIGRLAGGVAHDLNNLLTPILGYSELLLEDLDPEGPNRQSVNEILQAGIRARDLVC 437

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L F R       +V+    +   + ++   I  D  + +  + +  ++  +  +I   
Sbjct: 438 QLLAFSRKQTLEYKAVNLNTMVNGFKSLLRRTIREDIELMIRPSPDICNIMADAGQIEQV 497

Query: 122 LFMVAHASLPRGGK------------------VTISVQDSKNENIFSLKINGNLARFPEK 163
           L  +A  +     +                         + +  + ++  NG+       
Sbjct: 498 LMNLAVNASDAMPRGGILTIETARVYLDENYAKLHEDAKAGDYIMMAVSDNGDGMDQKTL 557

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +    V  +  ++   +     +         L 
Sbjct: 558 QHIFEPFFSTKGQQGTGLGLATVYGIVKQHGGNVWVYSEEGEGTTFKVYLP 608


>gi|327182634|gb|AEA31081.1| putative histidine kinase [Lactobacillus amylovorus GRL 1118]
          Length = 618

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 67/240 (27%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++     + D      S + H++ +P+ ++   +E L      +  I  + +++ +  + 
Sbjct: 366 DVTEQQKNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKFLEVTQQETS 425

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106
             I  +  +         V  +           + I     + V                
Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 485

Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       + +  +++ N+   A    P G  +T+ +  +KN  I S+   G    
Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQNKNHVILSISDQGLGIP 545

Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +           +       +   +  R+  +  +         L 
Sbjct: 546 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|315037329|ref|YP_004030897.1| histidine kinase [Lactobacillus amylovorus GRL 1112]
 gi|312275462|gb|ADQ58102.1| putative histidine kinase [Lactobacillus amylovorus GRL 1112]
          Length = 595

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 67/240 (27%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++     + D      S + H++ +P+ ++   +E L      +  I  + +++ +  + 
Sbjct: 343 DVTEQQKNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKFLEVTQQETS 402

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106
             I  +  +         V  +           + I     + V                
Sbjct: 403 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 462

Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       + +  +++ N+   A    P G  +T+ +  +KN  I S+   G    
Sbjct: 463 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGSVITVRLTQNKNHVILSISDQGLGIP 522

Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +           +       +   +  R+  +  +         L 
Sbjct: 523 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 582


>gi|295703077|ref|YP_003596152.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294800736|gb|ADF37802.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 957

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 64/230 (27%), Gaps = 21/230 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
              F +  M   +   S + H++ +P+ ++    EL+     +   + + +  I   +  
Sbjct: 577 TKEFEVDQMK--SEFVSTVSHELRTPLASVLGFTELMLNKTLKEERQKKYLTTIYQEAQR 634

Query: 60  AIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +                     D L  +  + +V +   +  +   +S       +
Sbjct: 635 LTSLINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKHEFDMISDQEHFTVM 694

Query: 112 SRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +    ++  N+   A    P GG VT+ V   ++     ++  G              
Sbjct: 695 GDKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDIQDEGIGIPNKALGQLFTK 754

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      I    +    V  +   +   +  +         + +L 
Sbjct: 755 FYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLP 804


>gi|260664970|ref|ZP_05865820.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii SJ-7A-US]
 gi|260561024|gb|EEX26998.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii SJ-7A-US]
          Length = 618

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 68/244 (27%), Gaps = 38/244 (15%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L      +  I  + +++ +  
Sbjct: 369 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEE 421

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102
           +   I  +  +         V  +             +     + V              
Sbjct: 422 TERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKY 481

Query: 103 -------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                  +        + +  +++ N+   A    P GG +T+ +  S+N+ I S+   G
Sbjct: 482 SIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQNQIILSISDQG 541

Query: 156 NLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +    F +    +           +       +   +K R+  +  +       
Sbjct: 542 LGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFY 601

Query: 211 ALLE 214
             L 
Sbjct: 602 ISLP 605


>gi|238855834|ref|ZP_04646123.1| sensor protein YycG [Lactobacillus jensenii 269-3]
 gi|282933324|ref|ZP_06338707.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|238831497|gb|EEQ23845.1| sensor protein YycG [Lactobacillus jensenii 269-3]
 gi|281302509|gb|EFA94728.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
          Length = 621

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 68/244 (27%), Gaps = 38/244 (15%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L      +  I  + +++ +  
Sbjct: 372 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEE 424

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102
           +   I  +  +         V  +             +     + V              
Sbjct: 425 TERMIRMINDLLSLSRMDRGVAKMDLEWVNFNDFLSHVLNRFDMIVKKDAEKGQEGEKKY 484

Query: 103 -------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                  +        + +  +++ N+   A    P GG +T+ +  S+N+ I S+   G
Sbjct: 485 SIKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLSQSQNQIILSISDQG 544

Query: 156 NLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +    F +    +           +       +   +K R+  +  +       
Sbjct: 545 LGIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGRIWADSQEGKGSTFY 604

Query: 211 ALLE 214
             L 
Sbjct: 605 ISLP 608


>gi|148657135|ref|YP_001277340.1| nitrogen specific signal transduction histidine kinase NtrB
           [Roseiflexus sp. RS-1]
 gi|148569245|gb|ABQ91390.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Roseiflexus sp. RS-1]
          Length = 819

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 69/241 (28%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS- 57
            +     + S  L A+  L + + H++ +P+ +I    +L L +  +   + + ++  + 
Sbjct: 419 RRLEEQLIKSEKLSAIGQLVAGVAHEVNNPLTSISGYTQLMLRDASLPSAIREDLQHINT 478

Query: 58  ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GE 107
                       L F R        VD    L     +    + VD    V+       +
Sbjct: 479 QAERAARIVQNLLMFAREHKPQRMPVDINQVLQSTLTLRAYQLRVDNITVVTDFAPDLPQ 538

Query: 108 KIDLSRERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNENIFSLKING 155
            +    +  ++ LNL   AH ++                +        +     ++   G
Sbjct: 539 TVADPHQLQQVFLNLINNAHQAMIERGGKGTLTLRTSVERRVGEGGREETCIRVAVNDTG 598

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I D    +        +       +  E+  R+  E        +   L
Sbjct: 599 IGIPPRNLN-RIFDPFFTTKPIGQGTGLGLSICFGIIQEHHGRIWAESEVGVGTTMYVEL 657

Query: 214 E 214
            
Sbjct: 658 P 658


>gi|327438193|dbj|BAK14558.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 611

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 66/235 (28%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +    ++   +      + + H++ +P+  + + LE L      +  I    + + +  
Sbjct: 372 TEQEKIDMERRE----FVANVSHELRTPLTTMRSYLEALAEGAWKDENIAPTFLNVTQTE 427

Query: 57  SMSAIIRLKFMRL------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
           +   I  +  +                         + +    ++  + V+        +
Sbjct: 428 TERMIRLVNDLLQLSKMDSQEYELNLEFVEFNKFFTQIIDRFEMSKSQNVEFIRLLPEKS 487

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 + +  +++ N+   A    P GG +        N     +  +G      E  T
Sbjct: 488 YFVDIDTDKLTQVIDNIISNALKYSPDGGNIRFGFTVHDNMIRVMISDDGMGI-PKENVT 546

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           ++    +       +   +  ++  E  +     +   L 
Sbjct: 547 RIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 601


>gi|328952174|ref|YP_004369508.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452498|gb|AEB08327.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 481

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 74/233 (31%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----------DE 48
           + ++    L S  + A+  L S I H++ +PI  I  + E L E               +
Sbjct: 242 LEEHQEQLLQSRKIAAIGTLTSGIAHELNNPINNIVLTAETLKEDFRHVGEEEAVSLLHD 301

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           ++     +S      L F R        +     + +  ++     +    +V      E
Sbjct: 302 ILVQADRASEIVKGLLDFSRSERPEFELLTIPAVVDETLKLVRNQLMLSGIQVDKEVPAE 361

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEK 163
              +S +R    ++ LN+F+ A  ++P GG        +  +     +   G     PE 
Sbjct: 362 MPLISGDRKSLQQVFLNIFINAIQAMPDGGYLRIKVYPEEDHWLKIDVGDTGAGI-DPEH 420

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +        +       +  ++   +          V +  L 
Sbjct: 421 LPRIFDPFYTTKEVGRGTGLGLSVTYGIIEKHGGHIEAHSKKGEGTVFTITLP 473


>gi|229004185|ref|ZP_04161986.1| hypothetical protein bmyco0002_11500 [Bacillus mycoides Rock1-4]
 gi|228757046|gb|EEM06290.1| hypothetical protein bmyco0002_11500 [Bacillus mycoides Rock1-4]
          Length = 465

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     +  ++LV    +   H+I +P+  I   + LL E  I+++      +       
Sbjct: 240 ERQQNEIQKIELVGTFAASTAHEIRNPLTGIKGLVTLLKEKHIQEQDQFYFSVIEQEIKR 299

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                       K   +        D +  +  I +   +   +   +Q+      I  S
Sbjct: 300 INEIVSEFLILGKPTAIIEKKYDVRDIIKEVSLIIRSEANLHNIIFTLQLPDHPVHIRCS 359

Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           ++   +++LN+   A  ++  G  +TI V  +K      +   G           +    
Sbjct: 360 KDHMKQVVLNITKNAIEAMSSGDVLTIQVTSNKEHAQLHIIDTGKGI-PKHIQKHLFHPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S      +       +      +++ +   +    +   L 
Sbjct: 419 FTSKDTGTGLGLVICKRIIEMYDGQIVIDSTKNKGTTVHIKLP 461


>gi|196035433|ref|ZP_03102838.1| sensor histidine kinase KinD [Bacillus cereus W]
 gi|195992110|gb|EDX56073.1| sensor histidine kinase KinD [Bacillus cereus W]
          Length = 498

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVSLLKEKYKDEQDQFYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494


>gi|307266331|ref|ZP_07547870.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918638|gb|EFN48873.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 568

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 74/230 (32%), Gaps = 26/230 (11%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAII 62
               L A+     + + H++ +P+  I + +E L     +       +++I   +     
Sbjct: 338 EQHKLDAMRKEFVANVSHELRTPLATIKSYVETLLYSDVDAEYLKRFLKIIDSETDRMTR 397

Query: 63  RLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +K +              +     + + +  I ++  +    ++++ V        +  
Sbjct: 398 LVKDLLLLSKMDSEDKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQETPRHVYI 457

Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +     ++++NL   A    P  G + +  +  +N   F ++ NG      +   +I + 
Sbjct: 458 DKDKMEQVIVNLVTNAIKYTPENGMIKVMTEYDENFATFIVEDNGIGIPKEDLP-RIFER 516

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    +    V  +   +K  +  E       ++   L 
Sbjct: 517 FYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|154685775|ref|YP_001420936.1| KinD [Bacillus amyloliquefaciens FZB42]
 gi|154351626|gb|ABS73705.1| KinD [Bacillus amyloliquefaciens FZB42]
          Length = 499

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           +        ++L+  L +   H+I +P+  I   ++LL +      +     +I      
Sbjct: 273 ERAQNEAQKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKSEEDQLYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKID 110
               +    +    T     +  L DI   I   I          V+  + V+   +   
Sbjct: 333 INQIVSEFLVLGKPTAERLEVNSLQDILDEIMPIIYSEGNLYNVEVNVEILVNRPLKVNC 392

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +++LN+   A  S+  GG+++I ++   ++ +  +  NG      +    I   
Sbjct: 393 TKDHIKQVILNVAKNALESMQEGGRLSIYLEARDHKAVIKVADNGMGI-SEDMLEHIFLP 451

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V S      +       +       +  +   D    ++  L 
Sbjct: 452 FVTSKEKGTGLGLVVCKRIMLMYGGSIDIQSEVDKGTEVTITLP 495


>gi|219853149|ref|YP_002467581.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219547408|gb|ACL17858.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 746

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           +    N+  ++ + +L   I HD  + + AI  ++EL      ED  +            
Sbjct: 504 QEELLNIERLESIGVLAGGIAHDFNNLLSAILGNIELARMDLDEDSPLDERMAEMEQVVL 563

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSR 113
            A    + +         +   + LG + +   +F      V+                 
Sbjct: 564 RATALTRQLLTFAKGGAPIRRWVHLGPMIKDTAEFTCRGSPVKCSCRVPDDLWITEVDQN 623

Query: 114 ERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFP 161
           + ++++ N+ + A  ++P                  +    +      +L  +G      
Sbjct: 624 QISQVINNIVLNAVQAMPDGGILRVTAENSEYDCGEVVPLAAGRYVKIALTDDGPGI-PA 682

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+ ++I D    +      +       +  ++   LL           + L+ 
Sbjct: 683 EQVSRIFDPFFTTKTAGSGLGLSTSFSIIRQHNGLLLVVSTPGEGTTFTILIP 735


>gi|150388921|ref|YP_001318970.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149948783|gb|ABR47311.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 467

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 71/230 (30%), Gaps = 19/230 (8%)

Query: 5   ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
           +  +L     L   L S I H++ +P+  + + +E + +      +E + + +      I
Sbjct: 238 LATSLEEQKILRKRLTSDISHELRTPLTILQSHIEAIRDGIWEPTEEKLSICKNEVDRLI 297

Query: 62  IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  ++                      +  + D          +  + ++        
Sbjct: 298 KLVGELQNLTDIEKHQIDLQLENCQLSKVIDEVFDGFAYQFQQKQIMFKREIQGDIYMNI 357

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167
              +  +I++NL   A       G V++S+++  +    +++  G      +    F + 
Sbjct: 358 DPDKMKQIIINLLSNALKFTDPEGSVSVSLKEEADRIRLTVEDTGIGIESEDIPYVFERF 417

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             G+           I       L   ++  +  E         + +L +
Sbjct: 418 YRGDQSRNRSTGGAGIGLTITRSLVEAHQGTIFVESEKKKGTKFTVILPR 467


>gi|298387446|ref|ZP_06996998.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
 gi|298259653|gb|EFI02525.1| NUDIX/MutT-family protein [Bacteroides sp. 1_1_14]
          Length = 883

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     L+ +    +E  Q + +   +  
Sbjct: 656 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLMVDTEDMEERRQYMDIVEENND 713

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                         VD  +   DI   +      +  +       +  
Sbjct: 714 LLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKARPNVEILFDRHLPECR 773

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G       Q  +    F +   G       +    
Sbjct: 774 IMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLRFYVADTGIGIEPEMQNEIF 833

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +    +  +   +        L 
Sbjct: 834 ERFVKLNSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLP 881


>gi|194336406|ref|YP_002018200.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308883|gb|ACF43583.1| multi-sensor signal transduction histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 680

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMSA 60
               L A+  L S + H+I +P+ AI    + L        +     ++++ +       
Sbjct: 458 RQEKLSAMGELASGVAHEIRNPLNAIGILAQRLAIEFSPTADEEEYRQLVRAVVSEVYRV 517

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSWTGEKIDLSR 113
              ++        +  +     L +        +        +   +             
Sbjct: 518 NAIIQRFLKFARPSKLIMIKSDLDEFMLSYRHLLQGEADAKGIRFSLNTDSGAMVNIDHE 577

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  + LLNL   A  +   GG++T+S+   +N+ +  +   G      E+  +I +    
Sbjct: 578 QMRQALLNLVQNAVEATEEGGEITVSLFCRENQALIEIVDTGRGIPEKER-ARIFNLYFT 636

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +   +       +   +   +  E  +         L 
Sbjct: 637 TKDEGTGMGLSIANQIIQSHGGIIEIESEEHQGSCFRIKLP 677


>gi|119945449|ref|YP_943129.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119864053|gb|ABM03530.1| PAS/PAC sensor signal transduction histidine kinase [Psychromonas
           ingrahamii 37]
          Length = 506

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 78/231 (33%), Gaps = 19/231 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
            + +   L  S  L AL  +   I H+I +P+    ++ + L E G+  E          
Sbjct: 275 QRKLEVELRQSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFLMEEGLPLEFRTECAKKIQ 334

Query: 51  -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             L + S +   +              +D    L +   +I +   V K   V     K 
Sbjct: 335 VSLEKASCIIENLLRFSRPSCEQNMVPMDLDTVLCETIMLIANQAKVYKIEIVYLPIGKC 394

Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                +     ++ +N F+ A  ++P GG++ I ++   +E +  ++  G          
Sbjct: 395 SLVSGIFTLLQQVFMNFFLNAINAMPEGGELGIILEQQGDEALVCIRDTGTGILEGAL-D 453

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I D    S+       +       +  +++  +  + +       + LL 
Sbjct: 454 NIFDPFHTSSPAGKGVGLGLSLCYSIVKQHRGSISVDSMVGKGSTFTVLLP 504


>gi|21228983|ref|NP_634905.1| sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
 gi|20907524|gb|AAM32577.1| Sensor histidine kinase/response regulator [Methanosarcina mazei
           Go1]
          Length = 854

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 60/244 (24%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL------DEVGIED 47
            K     L    + A           + + H++ +P+ AI    EL+      +   +  
Sbjct: 261 RKQAEEELLQAKIAAESANRSMSEFLATMSHELRTPLTAIIGFSELMLGGSTGEFDELNK 320

Query: 48  EVMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           + +  I  S    +  +             M L   Y    D      +I   +     +
Sbjct: 321 KFLGNISTSGKHLLSLINSILDLSKIEAGKMELQSDYFSLQDIFSNTKNILSPLALKKNI 380

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                V              +I+ NL   A     +GG V +    S+     S+   G 
Sbjct: 381 SMDFNVEPGFFVYADRTRFKQIMYNLVSNAVKFTQKGGSVEVLGIVSEKGVRVSVSDTGI 440

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E    +               +   +           +  R+  E         +
Sbjct: 441 GISKDEIKQ-LFKPFKQIDSTLSRKYEGTGLGLVLSKKFVEMHGGRIWVESEPGKGSTFT 499

Query: 211 ALLE 214
             + 
Sbjct: 500 FEVP 503


>gi|55981692|ref|YP_144989.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55773105|dbj|BAD71546.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 373

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 58/230 (25%), Gaps = 19/230 (8%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSS 57
            +   L       A L   + H++ +P+ A+    E     +L +    + +++ ++   
Sbjct: 135 RLAEALEKVEKTRAELIGTVAHELRTPLAALQGYAEGLIDGVLSKEKAAEGILREVKAMR 194

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKI 109
                     R+           +    + +          + +             +  
Sbjct: 195 RLVEDLSLVSRVEAKAVEIRPRPLDPKGLLEEALARFQSAFQAKGVALSLEAQDPLPQVW 254

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQ 166
                  ++L NL   A    P+GG+V +          F +   G        P  F +
Sbjct: 255 ADEERVLQVLANLLTNALRHTPQGGEVRLRAFRQGEAVAFQVADTGPGIPEEHLPHIFER 314

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +           +       L      R+  E         +  L 
Sbjct: 315 FYRVDKARSRKEGGSGVGLTVAKGLVEAMGGRIFVESRVGEGTTFTFTLP 364


>gi|83589978|ref|YP_429987.1| periplasmic sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83572892|gb|ABC19444.1| periplasmic sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 469

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 61/216 (28%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             +   H++ +P+  I  +++LL +        +DE +  I   +      +  +     
Sbjct: 250 FVADASHELRTPLTTIRGNVDLLRKVQGQGEAWQDEALADIASEAERMSRLVNDLLTLAR 309

Query: 68  -----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                 +       +  L  +     ++         ++       +       ++   L
Sbjct: 310 ADAGQEIKREPLEILPLLQEVARQAPLLGTATFTAIGLENLAGVHIMGNRDYLKQLFFIL 369

Query: 123 FMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178
              A    P  GK+  I   + +   I  ++  G      +    F +    +   + + 
Sbjct: 370 LDNAFKYTPSEGKIDLIVNVEPQQRLIIKVRDTGPGIPPRDLEHIFERFYRADATRSSEG 429

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +  +++  +  E         +  + 
Sbjct: 430 TGLGLAIARWIVEQHQGHIGVESTVGKGTTFTITIP 465


>gi|325955797|ref|YP_004286407.1| putative histidine kinase [Lactobacillus acidophilus 30SC]
 gi|325332362|gb|ADZ06270.1| putative histidine kinase [Lactobacillus acidophilus 30SC]
          Length = 618

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++     + D      S + H++ +P+ ++   +E L      +  I  + +++ +  + 
Sbjct: 366 DVTEQQKNEDSQKQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPNIAPKFLEVTQQETS 425

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106
             I  +  +         V  +           + I     + V                
Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNNDKKKKYTIKR 485

Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       + +  +++ N+   A    P GG +T+ +  +KN  I S+   G    
Sbjct: 486 ELGNQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNKNHVILSISDQGLGIP 545

Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +           +       +   +  R+  +  +         L 
Sbjct: 546 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 605


>gi|228996534|ref|ZP_04156173.1| hypothetical protein bmyco0003_11210 [Bacillus mycoides Rock3-17]
 gi|228763166|gb|EEM12074.1| hypothetical protein bmyco0003_11210 [Bacillus mycoides Rock3-17]
          Length = 465

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     +  ++LV    +   H+I +P+  I   + LL E  I+++      +       
Sbjct: 240 ERQQNEIQKIELVGTFAASTAHEIRNPLTGIKGLVTLLKEKHIQEQDQFYFSVIEQEIKR 299

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                       K   +        D +  +  I +   +   +   +Q+      I  S
Sbjct: 300 INEIVSEFLILGKPTAIIEKKYDVRDIIKEVSLIIRSEANLHNIIFTLQLPDHPVHIRCS 359

Query: 113 RERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           ++   +++LN+   A  ++  G  +TI V  +K      +   G           +    
Sbjct: 360 KDHMKQVVLNITKNAIEAMSSGDVLTIQVTSNKEHAQLHIIDTGKGI-PKHIQKHLFHPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S      +       +      +++ +   +    +   L 
Sbjct: 419 FTSKDTGTGLGLVICKRIIEMYDGQIVIDSTKNKGTTVHIKLP 461


>gi|315644230|ref|ZP_07897400.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315280605|gb|EFU43894.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 460

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 61/234 (26%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK I        +     S + H+I SP+ +I    + L    + +E  Q       + 
Sbjct: 228 MAKGIAQL---EQMRQEFVSNVSHEIQSPLASIQGFSQTLQTKRLSEEQQQHYLSIIEAE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             R+  +        S+D    + +                  W+    +L+ +      
Sbjct: 285 SRRMSQLSKQLLMLASLDKEENILEKSTFDVAEQIKQVLFHTEWSWRSKELTMDMSLPST 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF---PE 162
                     ++  NL   +       G +++ +    N      +   G        P 
Sbjct: 345 YIHGDQQLLHQVWTNLMTNSIKFTAPEGIISLRITGQDNPSCSIEISDTGIGIPPEHLPH 404

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +        S  +       +   +  R+            +  L 
Sbjct: 405 IFDRFYRVDEARDRSEGSSGLGLAITQKIVQMHGGRIEVTSQPGEGTTFTVTLP 458


>gi|309791780|ref|ZP_07686268.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillochloris trichoides DG6]
 gi|308226186|gb|EFO79926.1| response regulator receiver sensor signal transduction histidine
           kinase [Oscillochloris trichoides DG6]
          Length = 396

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 23/232 (9%)

Query: 6   CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIR 54
              L  +D L +   + + H++ +P+ ++   +EL D                 + +   
Sbjct: 160 NAALQELDTLKSQFLATLSHELRTPLTSLIGYIELFDRGMLGTLSTPQKEAMGVMRRSCT 219

Query: 55  LSSMSAIIR--LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           + S         + +R    +   ++    L     + ++              E   + 
Sbjct: 220 ILSQQLNNLLYFQELRSRSFHLRPINMRDLLRQSLILFKERADQAGIRFEVVGSEIAPIL 279

Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +     +++ NL   A      GG V +  QD  +  I  ++ NG      E   +I  
Sbjct: 280 ADTSGIEQLVRNLIDNAIKFTQAGGWVRVVFQDEPSRLIMRVEDNGIGI-PSEYHERIFL 338

Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     S      +    V  + + +  ++    I     V + +L +
Sbjct: 339 PFYRVDSSLASGQTGSGLGLAIVQHVINAHGGQITVRSIPGKGSVFTVVLPR 390


>gi|294497707|ref|YP_003561407.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294347644|gb|ADE67973.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 957

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 64/230 (27%), Gaps = 21/230 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
              F +  M   +   S + H++ +P+ ++    EL+     +   + + +  I   +  
Sbjct: 577 TKEFEVDQMK--SEFVSTVSHELRTPLASVLGFTELMLNKTLKEERQKKYLTTIYQEAQR 634

Query: 60  AIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +                     D L  +  + +V +   +  +   +S       +
Sbjct: 635 LTSLINDFLDVQRMEAGKQTYDKKYQDILPLIKQVIEVQKIQTSKHEFDMISDQEHFTVM 694

Query: 112 SRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +    ++  N+   A    P GG VT+ V   ++     ++  G              
Sbjct: 695 GDKDKLLQLFNNVISNAVKYSPDGGNVTVKVYQKEHAVYIDIQDEGIGIPSEALGQLFTK 754

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      I    +    V  +   +   +  +         + +L 
Sbjct: 755 FYRVDNSDMRKIGGTGLGLAIVKEIVKAHGGDITVQSEWKKGTTFTVVLP 804


>gi|150019295|ref|YP_001311549.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149905760|gb|ABR36593.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 27/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQL 52
           K+    L    L     + I H++ +P+  I   +++L           + G     + +
Sbjct: 293 KSKEEALELEKLRTEFFANISHELRTPLNIILGVIQILRRDLLDKEKPIDKGKIINNIDI 352

Query: 53  IRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
            R +    +  +               +       V  +  +            ++    
Sbjct: 353 ERQNCFRLLRLINNLIDSTKLDAGHFEIDMINCNIVSVVEEITLSVAGYIINNNINLIFD 412

Query: 102 VSWTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                + I    ++  +I+LNL           G + +++ D +     S++  G     
Sbjct: 413 TDVEEKIIACDPDKIERIMLNLLSNCIKFTDDDGSIFVNIFDGEEYITLSVEDTGIGIPE 472

Query: 161 P-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + VD +     +   I    V  L   +   +  E         +  L 
Sbjct: 473 EKVEIIFDRFRQVDKSFTRNYEGSGIGLSLVKSLVEMHDGTISVESKYGVGTKFTIKLP 531


>gi|229139286|ref|ZP_04267858.1| hypothetical protein bcere0013_23960 [Bacillus cereus BDRD-ST26]
 gi|228644142|gb|EEL00402.1| hypothetical protein bcere0013_23960 [Bacillus cereus BDRD-ST26]
          Length = 579

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 392 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTNSKDIIIEC 451

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 452 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 510

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 556


>gi|227879007|ref|ZP_03996903.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256844226|ref|ZP_05549712.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256849374|ref|ZP_05554807.1| two-component system response regulatory system histidine kinase
           [Lactobacillus crispatus MV-1A-US]
 gi|262047879|ref|ZP_06020827.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|293380063|ref|ZP_06626159.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus
           214-1]
 gi|295691936|ref|YP_003600546.1| sensor protein [Lactobacillus crispatus ST1]
 gi|227861396|gb|EEJ69019.1| histidine kinase [Lactobacillus crispatus JV-V01]
 gi|256613304|gb|EEU18507.1| two-component system response regulator [Lactobacillus crispatus
           125-2-CHN]
 gi|256714150|gb|EEU29138.1| two-component system response regulatory system histidine kinase
           [Lactobacillus crispatus MV-1A-US]
 gi|260571823|gb|EEX28396.1| two-component system response regulator [Lactobacillus crispatus
           MV-3A-US]
 gi|290923377|gb|EFE00284.1| hypothetical protein HMPREF0891_0157 [Lactobacillus crispatus
           214-1]
 gi|295030042|emb|CBL49521.1| Sensor protein [Lactobacillus crispatus ST1]
          Length = 617

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58
           ++     + D      S + H++ +P+ ++   +E L+E       I  + +++ +  + 
Sbjct: 366 DVTEQQKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKNPEIAPKFLEVTQQETS 425

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106
             I  +  +         V  +           + I     + V                
Sbjct: 426 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRE 485

Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                      + +  +++ N+   A    P GG +T+ +  ++N  I S+   G     
Sbjct: 486 LGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNHVILSISDQGLGIPR 545

Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +           +       +   +  ++  +  +         L 
Sbjct: 546 KDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLP 604


>gi|206973556|ref|ZP_03234474.1| hypothetical protein BCH308197_2608 [Bacillus cereus H3081.97]
 gi|206747712|gb|EDZ59101.1| hypothetical protein BCH308197_2608 [Bacillus cereus H3081.97]
          Length = 595

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTNSKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572


>gi|217960096|ref|YP_002338654.1| hypothetical protein BCAH187_A2703 [Bacillus cereus AH187]
 gi|222096161|ref|YP_002530218.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|217066659|gb|ACJ80909.1| hypothetical protein BCAH187_A2703 [Bacillus cereus AH187]
 gi|221240219|gb|ACM12929.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 595

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTNSKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572


>gi|312977020|ref|ZP_07788769.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05]
 gi|310896348|gb|EFQ45413.1| sensory box histidine kinase VicK [Lactobacillus crispatus CTV-05]
          Length = 620

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58
           ++     + D      S + H++ +P+ ++   +E L+E       I  + +++ +  + 
Sbjct: 369 DVTEQQKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKNPEIAPKFLEVTQQETS 428

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106
             I  +  +         V  +           + I     + V                
Sbjct: 429 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKEKKKYTIKRE 488

Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                      + +  +++ N+   A    P GG +T+ +  ++N  I S+   G     
Sbjct: 489 LGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRMTQNQNHVILSISDQGLGIPR 548

Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +           +       +   +  ++  +  +         L 
Sbjct: 549 KDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGKGSTFYISLP 607


>gi|294496643|ref|YP_003543136.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667642|gb|ADE37491.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 632

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 71/243 (29%), Gaps = 31/243 (12%)

Query: 3   KNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQ 51
           KN   +L +  L+A           + + H++ +P+ AI    ++L       + D+ ++
Sbjct: 385 KNAEKSLINAKLLAENANRAKTEFLANVSHELRTPLNAIIGFSQILSTNKSGNLNDKELK 444

Query: 52  LIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------V 96
            +     S         K + ++    G  D  I   D  ++ ED               
Sbjct: 445 YVSNILKSGNHLLELINKILDISKLQAGKQDLEIEYVDFAEICEDIKPFIDPLIAKKNLS 504

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            + +             +  +I+ NL   A    P  G + I+ +   +    S+K  G 
Sbjct: 505 FECILDCTDTNIKADKTKMLQIMHNLLGNAIKFTPENGSIAINARCIGDNFQVSVKDTGI 564

Query: 157 LARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                            D +     +   +    V      +   +  E         + 
Sbjct: 565 GIPEASHKDIFHSFKQVDSSATRKYEGTGLGLALVKEYIEMHGGDIWVESEVGKGSTFTF 624

Query: 212 LLE 214
           ++ 
Sbjct: 625 VIP 627


>gi|239826363|ref|YP_002948987.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
 gi|239806656|gb|ACS23721.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. WCH70]
          Length = 744

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
            K +   L     +++V  L + I H+I +P+ A+   ++LL    +         ++  
Sbjct: 502 RKEMELQLRKSDTLNVVGELAAGIAHEIRNPMTALKGFIQLLQGSIKEDYSMYFNVIMSE 561

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111
                 I  +F+ LA               ++     +       + ++   +      +
Sbjct: 562 LKRIESIITEFLVLAKPQAIQFQQNDVCKIMQDTIDLISAQATMHNVQIVADFAPHVPFI 621

Query: 112 SRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             E  ++      +   ++    K         +   +    S+   G      +K  ++
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPKGGEVTVRINRLDDSHIRISITDQGCGI-PQDKIKKL 680

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +       +  E++ ++  E   D        L 
Sbjct: 681 GQPFYTTKERGTGLGLMVSYKIIEEHQGKIDVESEVDVGTTFHITLP 727


>gi|218782891|ref|YP_002434209.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764275|gb|ACL06741.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 479

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63
               L A+  L + + H++ +P+  +  S  L+ E       + E + L++  ++     
Sbjct: 252 DQEKLSAIGRLAAGVAHELNNPLTTVLTSTMLIQEDMDPKHPDYEELDLVKNETLRCRNI 311

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +  +      +  +     L +I Q     + +     +  ++     EK+ +  +R +I
Sbjct: 312 VNNLLNFARQSKPIKQDADLNEIVQSSMALIRKQADFKNIVMKCDTCPEKLMVYCDRDQI 371

Query: 119 LLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              L  +   ++                D +     S+   G           I +    
Sbjct: 372 QQCLINLGLNAIDATAPGGRITFSTALADDEKMARISVADTGEGLPLN-IQDSIFEPFFT 430

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +          ++K  +  E    H    +  L 
Sbjct: 431 TKETGTGLGLSITHGFVKQHKGFIGLESTQGHGATFTIRLP 471


>gi|326391194|ref|ZP_08212738.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992763|gb|EGD51211.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 568

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 74/230 (32%), Gaps = 26/230 (11%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAII 62
               L A+     + + H++ +P+  I + +E L     +       +++I   +     
Sbjct: 338 EQHKLDAMRKEFVANVSHELRTPLATIKSYVETLLYSDVDAEYLKRFLKIIDSETDRMTR 397

Query: 63  RLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +K +              +     + + +  I ++  +    ++++ V        +  
Sbjct: 398 LVKDLLLLSKMDSEEKNLKFEHKNLNEVIIDVINRLSIEAHKKNQKLIVDLQEVPRHVYI 457

Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +     ++++NL   A    P  G + +  +  +N   F ++ NG      +   +I + 
Sbjct: 458 DKDKMEQVIVNLVTNAIKYTPENGMIKVMTEYDENFATFIVEDNGIGIPKEDLP-RIFER 516

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    +    V  +   +K  +  E       ++   L 
Sbjct: 517 FYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|222054816|ref|YP_002537178.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. FRC-32]
 gi|221564105|gb|ACM20077.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. FRC-32]
          Length = 361

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 70/231 (30%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMS 59
            +  L +L  L + + H+I +P+G I  + +LL+    ++         +++ ++  +  
Sbjct: 130 QADRLSSLGALAAGLAHEIKNPLGGIKGAAQLLEMELPDNPELRDYTRVMLKEVQRVNRI 189

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
               L            V+    LGDI  + +  +   +   +      I          
Sbjct: 190 VEDLLALASPRKLELSKVNLHKVLGDILLLQKRAVDGRRITFIQQFDPSIPPILADESLL 249

Query: 116 AKILLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFPEK 163
            ++ LNL   A  ++  GG+            +    +         +  +G      E 
Sbjct: 250 TQLFLNLIKNAVEAVGDGGQVKVKSRILSDYSMMPKGEGRSRLVAIDVCDDGPGIDKEEL 309

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +      +       +  E++  +  +         + +L 
Sbjct: 310 -DHLFTPFYTTKSKGTGLGLAICQKIIAEHRGMIRVDSEPGKGTAFTVMLP 359


>gi|134045335|ref|YP_001096821.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132662960|gb|ABO34606.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 639

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 19/233 (8%), Positives = 63/233 (27%), Gaps = 25/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
           N    L ++   + L + + H++ +P+ +I   +EL+ +         + + +Q+   + 
Sbjct: 404 NELKELDNLK--SELIAIVSHELRTPLTSIKGYVELVLDGTMGAINDSQRKCLQVADDNI 461

Query: 58  MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +     ++            + +        + +  +    + +     +     V    
Sbjct: 462 VRLRRLIESMLDLSKIERGELEMYREKVNICEIVGDVIQYLKPLATEKNIKLNKNVE-KI 520

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++L NL   A    P    + ++           +  +G      +    
Sbjct: 521 TLEADKDRITQVLTNLIENAIKFSPANESILVNGTLEDEGLHLKVTDHGAGIPKKDMEKV 580

Query: 164 FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +       +   +   +  E           +L 
Sbjct: 581 FDRFYQVDSSTKRKKGGSGLGLAVCKSIVEAHGGSIWVESELGKGSTFHIILP 633


>gi|328954099|ref|YP_004371433.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454423|gb|AEB10252.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 623

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 78/236 (33%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEV 49
           + +     + S  L +L  L S + H+I +P+ ++   LE ++         E   +  +
Sbjct: 373 LKETQQAAVRSQQLASLGQLASGVAHEIRTPLTSLKLFLESIENEITISPEYEEDFQVAM 432

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            Q+ R+ +               Y+      +    +  +       +  ++ S +    
Sbjct: 433 NQIRRMEATINRFLDFARPREPVYSWLEVGDLLEDALLIIGPRARLQETTIRKSLSPSLP 492

Query: 110 DLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLA 158
            +  +R ++   LLNL + A  ++P+ G++T++    +           +  +       
Sbjct: 493 KIKGDRKQLGEALLNLMVNALEAMPQRGRLTVAAHPGELPGTDGSRPCVVIDISDTSPGI 552

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  E   ++ +    +      +    V      +   ++   +       S  + 
Sbjct: 553 Q-GENIGRLFEPFFTTKATGAGLGLSIVSSTVQRHGGEVMVRSVVGRGTTFSVFIP 607


>gi|296329677|ref|ZP_06872162.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674074|ref|YP_003865746.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153175|gb|EFG94039.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412318|gb|ADM37437.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 738

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 73/227 (32%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------Q 51
            K +   L   D   +V  L + I H+I +P+ A+   ++LL      D  +       +
Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSE 560

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           L R+ S+     +     A  Y     + I    I+ +       + ++ +    +   +
Sbjct: 561 LKRIESIITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQIHLDLIDDIPPI 620

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167
             E  ++      +   ++                 ++  + SL+  G      +K  ++
Sbjct: 621 YCEPNQLKQVFINILKNAIEVMPDGGNIFVTIRTLDQDHVLISLRDEGIGM-TEDKLKRL 679

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++  ++ E  +    V    L 
Sbjct: 680 GEPFYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHLTLP 726


>gi|254760494|ref|ZP_05212518.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
          Length = 499

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 72/226 (31%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 252 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 311

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 312 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 371

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++      I S+   G      E+  ++ +
Sbjct: 372 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKYGIIISVIDKGIGI-PAERIKRLGE 430

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 431 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 476


>gi|302036330|ref|YP_003796652.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604394|emb|CBK40726.1| putative Histidine kinase, contains GAF domain [Candidatus
           Nitrospira defluvii]
          Length = 1002

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 61/240 (25%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
           + ++      +  L +L  +     H+I +P+ +I   ++L  E   + E M+       
Sbjct: 716 LRRSQLLMRRTDRLRSLETMAGGFAHEIRNPLTSIKTFVQLAPERRDDVEFMEQFSQVVC 775

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKI 109
                        L + R              +      +     +    +Q     +  
Sbjct: 776 EDVERIERLVHEILDYARYMTPKLTQESLNDVVSSCLYFIEVKASSKAITIQKELASDLP 835

Query: 110 DLSRERAKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLAR 159
            +  +R +I   L  +   ++                 +    ++      ++ +G    
Sbjct: 836 YVRLDRQQIKQVLLNLFINAMEAIGGDQGGRLSVRTRKLVKAVNEPWVQIEVEDSGPGID 895

Query: 160 FPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    I D    +  +        +       +  E+   +       H       L 
Sbjct: 896 PQDL-DHIFDPFYTTKHESGEREGTGLGLTIAHQIVQEHGGYVEVASEVGHGTRFMVNLP 954


>gi|296161928|ref|ZP_06844728.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
 gi|295887804|gb|EFG67622.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
          Length = 996

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 65/243 (26%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           +A+ +     + D       A L S + H+I +P+ AI   LELL+ +     V+  +R 
Sbjct: 487 LARELTAARHAADSANAAKSAFLAS-MSHEIRTPLNAILGHLELLERLPQAAPVVARVRT 545

Query: 56  SSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKR 99
            + S+   L+ +                 +   D+   +     +               
Sbjct: 546 VASSSRALLQILNDILDFSKVEAGEMSFESIRFDAADLVRQATSMFMPLAQRKGLALTHT 605

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGN 156
           +  +     +       ++++NL   A     RG           N  I     +   G 
Sbjct: 606 IDAALPRYYLGDPGRIRQMVVNLLSNAIKFTDRGSVSIEVSAGKGNPAIPLVIRVTDTGI 665

Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                 +       +              +       +A      +     +    + + 
Sbjct: 666 GIPAKRQARVFDAFDQIDASITRRFGGTGLGLALCKRIAEGMGGTIEMSSEEGQGSIFTV 725

Query: 212 LLE 214
            L 
Sbjct: 726 TLP 728


>gi|254411776|ref|ZP_05025552.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181498|gb|EDX76486.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 968

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + K    +    +L +   S + H+  +P+ AI +S ELLD          +    Q I+
Sbjct: 733 LEKERELS----ELRSSFVSLVSHEFRTPLTAILSSSELLDRYSKKLTDEKKKAHHQRIQ 788

Query: 55  LSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           ++       L             +         +     + D  Q+          V   
Sbjct: 789 IAVSRMTQLLDDVLTIGKAEAGKLTFKPASMNLIAFCQDIVDTLQMSISQQHSINFVCHG 848

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             G+     +    IL NL   A     +G +V + +       IF ++  G      + 
Sbjct: 849 DCGDAQMDEKLLQHILNNLISNAIKYSSQGSEVKVELTCEGESAIFHIQDQGIGIPPEDI 908

Query: 164 ---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F+         TI    +    V      +   +  E         + +L 
Sbjct: 909 KKLFSSFQRAGNVGTIQGTGLGLAIVKKCVDLHGGLITVESEVGKGTTFTIILP 962


>gi|291288730|ref|YP_003505546.1| GAF sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885890|gb|ADD69590.1| GAF sensor signal transduction histidine kinase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 389

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 64/226 (28%), Gaps = 17/226 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56
           M K+    +     V +L S I HDI + +  + + LEL+D          E +  I   
Sbjct: 158 MRKSENLRV-----VGMLNSSIAHDIKNLLNIVQSYLELMDMEEGLNPEMREYIDAIHSE 212

Query: 57  SMSAIIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                     +        ++        +    +     ++     +   V        
Sbjct: 213 VKRIHGLTLDLLDFSRQRVTINIETFRISELFTEIAKHANIMTKDTDIVVEVTALDDLTM 272

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  +++ NL   A  +L   GKV ++ +   +  +F ++  G             
Sbjct: 273 KVDRGKIFRVIFNLVSNAIDALGCSGKVRLTAEQDSDFCVFRVRDTGKGVPKEHLAKLFQ 332

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V ++   +   +  +  +      +  + 
Sbjct: 333 PFFSSGKHKGTGLGLAIVQMIVEAHNGTIEVDSAEGLYTEFTVRIP 378


>gi|42781721|ref|NP_978968.1| hypothetical protein BCE_2662 [Bacillus cereus ATCC 10987]
 gi|42737644|gb|AAS41576.1| hypothetical protein BCE_2662 [Bacillus cereus ATCC 10987]
          Length = 595

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDELSTEKKNLYQIFKNVVSLINTKAIMTNIQVELYADSKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I ++   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIINVIDKGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572


>gi|323168623|gb|EFZ54303.1| signal transduction histidine-protein kinase atoS [Shigella sonnei
           53G]
          Length = 597

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 74/226 (32%), Gaps = 16/226 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     +  +  L  L  L + + H++ +P+ AI   +++L +   +    +       
Sbjct: 373 RKETQRRMAQAERLATLGELMAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLK 432

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I   +      L+F R        V     + +   +++      +   +S    ++  
Sbjct: 433 EIDSINKVIQQLLEFSRPRHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSP 492

Query: 112 SRERA----KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLN+ + A  ++         + Q S ++   S++ NG          +
Sbjct: 493 INADRELLKQVLLNILINAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLS-LQKK 551

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I D    +      +       + + ++  +    +  +    + +
Sbjct: 552 IFDPFFTTKASGTGLGLALSQRIINAHQGDIRVASLPGYGATFTLI 597


>gi|313885404|ref|ZP_07819154.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619134|gb|EFR30573.1| PAS domain S-box protein [Eremococcus coleocola ACS-139-V-Col8]
          Length = 618

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFM----- 67
             S + H++ +P+ ++ +  E L +  ++        +++I+L S   I  +  +     
Sbjct: 381 FVSNVSHELRTPLTSVKSYSEALLDGALQDTSLAQPFLEVIQLESNRMIRMVSNLLDLSK 440

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKIDLSRERA 116
                       VD    +  I   +E               R                 
Sbjct: 441 IDGGQIILQKDLVDFKRVVDHIVDRMEFTLESGQRDKNYKIVRHYTPRDIYVDIDQDRMT 500

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN-- 171
           +++ NL   A    P GGK+TI ++D+++  IFS+   G           F +    +  
Sbjct: 501 QVIDNLINNAIKYSPDGGKITIGLEDNRDSVIFSVSDQGLGISQVDAEHLFERFYRVDKA 560

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +   +  R+  E I++     S  L 
Sbjct: 561 RSREQGGSGLGLAISKEVVELHGGRIWVESIENEGSTFSFELP 603


>gi|291483900|dbj|BAI84975.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 500

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + ++       ++L+  L +   H+I +P+  I   ++LL +      +     +I    
Sbjct: 273 LERSENEA-QKLELIGTLAASTAHEIRNPLTGISGFIQLLQKKYKGEEDQLYFSIIEQEI 331

Query: 58  MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEK 108
                         K     +      D +  +  I     +   V+  +Q         
Sbjct: 332 KRINQIVSEFLVLGKPTAEKWELNSLQDIIGEIMPIIYSEGNLYNVEVELQYLTEQPLLV 391

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++LN+      S+P GGK+TIS+     + I  +  NG      E    I 
Sbjct: 392 KCTKDHIKQVILNVAKNGLESMPEGGKLTISLGALDKKAIIKVVDNGEGI-SQEMLDHIF 450

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V S      +       +       +  E        ++  L 
Sbjct: 451 LPFVTSKEKGTGLGLVVCKRIVLMYGGSIHIESEVRRGTKVTITLP 496


>gi|323527929|ref|YP_004230081.1| histidine kinase [Burkholderia sp. CCGE1001]
 gi|323384931|gb|ADX57021.1| histidine kinase [Burkholderia sp. CCGE1001]
          Length = 584

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 69/264 (26%), Gaps = 50/264 (18%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISP------------------IGAIHNS---- 36
           +A+     L S  L ++  L + + H+I +P                  + A+       
Sbjct: 311 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYVADLLTALAAYERTE 370

Query: 37  LELLDEVGIEDEVMQLIRLSS-----------------MSAIIRLKFMRLAFGYTGSVDS 79
            EL+ E       ++                             ++ ++       +   
Sbjct: 371 AELIAESRATLAALKREIDIDYLRTDIPALLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 430

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEK------IDLSRERAKILLNLFMVAHASLPRG 133
              L        + +  + + +     E         +  +  ++ +NL M A  S+   
Sbjct: 431 WANLESNLDTTINIVWNELKYKADLKREFGAIPELECIPSQLNQVFMNLLMNAAQSIEGH 490

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191
           G +T+            ++  G     PE   +I D    +        +       +  
Sbjct: 491 GHITVRTGHDDTSVWVEVEDTGQGI-RPEHRDRIFDPFFTTKPVGTGTGLGLSISYGIVR 549

Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215
           +   R+              +L K
Sbjct: 550 KQGGRIEVRSEVGQGSTFRVVLPK 573


>gi|319649833|ref|ZP_08003984.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317398413|gb|EFV79100.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 614

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 78/225 (34%), Gaps = 13/225 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M + +  +  ++ ++  L + I H+I +P+ A+   ++LL++   ED           + 
Sbjct: 384 MEEQLRKS-DTLHVIGELAAGIAHEIRNPMTALKGFIQLLEDSVKEDHTMYFNVITTELS 442

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKID 110
            I       +I  K   + F        +    D+         V  R            
Sbjct: 443 RIDSIINEFLILAKPQAVKFVEKDISQIMKETVDLLSAQAVLHNVQFRTYYEKNLPNVFC 502

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVD 169
            S +  K+ +N+   A   +P+GG +T+S+Q    ++   S++  G      +   ++ +
Sbjct: 503 ESNQMKKVFINIIKNAIEVMPKGGYITVSIQKGFDHKVHISIRDEGTGIPAHKIK-KLGE 561

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  E+K  +  E       V    L 
Sbjct: 562 PFYTTKERGTGLGLMVTYKIIEEHKGTIEVESKLGEGTVFHIHLP 606


>gi|328466858|gb|EGF37968.1| putative histidine kinase [Lactobacillus helveticus MTCC 5463]
          Length = 619

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++   +E L      +  I  + +++ +  +   I  +  +    
Sbjct: 380 QFISNVSHELRTPLTSLQAYIEALNEEAWKDPEIAPKFLEVAQQETSRMIRMINDLLSLS 439

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112
                V  +             I     + V                            +
Sbjct: 440 RMDRGVSKMDLEFVNLNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDT 499

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
            +  +++ N+   A    P GG +T+ +  S+   I S+   G      +    F +   
Sbjct: 500 DKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPRKDLGKIFDRFYR 559

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +   +  R+  +  +         L 
Sbjct: 560 VDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGKGSTFYISLP 606


>gi|163790939|ref|ZP_02185362.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7]
 gi|159873781|gb|EDP67862.1| histidine protein kinase; sensor protein [Carnobacterium sp. AT7]
          Length = 614

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 69/224 (30%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++ + LE L      +  I  + +++ +  +   I  +K +     
Sbjct: 381 FVSNVSHELRTPLTSMRSYLEALLDGAWKDPEIAPQFLEVTQEETDRMIRMIKDLLELSR 440

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----------------RER 115
              +   L         + D +     + +  + + +                     + 
Sbjct: 441 MDSNKSVLDLEYLNVNELFDHVIKRFEMMLQSSDKTMKEFSIKREFTKSQLWVEVDADKM 500

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++L N+   A    P GG +T  + ++    IFS+   G      +             
Sbjct: 501 IQVLDNIMNNAIKYSPDGGTITCGLVETNTSVIFSISDEGLGIPKRDLANVFDRFFRVDK 560

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++    +       +  ++K ++  E  +         L 
Sbjct: 561 ARARSMGGTGLGLAISKEVVQKHKGKIWAESTEGKGTTFYISLP 604


>gi|323360122|ref|YP_004226518.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
 gi|323276493|dbj|BAJ76638.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
          Length = 539

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 73/236 (30%), Gaps = 24/236 (10%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60
           +         L A   L + + H++ +P+ +I   L+L LD+  I  E  + + ++  +A
Sbjct: 298 SRDVTAEEQALRARDDLVASVSHELRTPLTSIIGYLDLALDDPAIIAETRERLEVAERNA 357

Query: 61  IIRLK------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104
               +       M  A  +    D +    DI  ++   I   +                
Sbjct: 358 TRLRELVSDILSMSAASRHGAEFDLVPTDTDIAAIVRAAIESQQPRAADHGIRIDSSGLR 417

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
            G      R   +++ NL   A     RGG VT++V  S+     ++  +G      E  
Sbjct: 418 DGSAHVDPRRLRQVVDNLISNAIKYNVRGGTVTVAVDVSETAVQIAVADDGPGISRTEQG 477

Query: 163 -KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +   G+           +       +   +   +               L +
Sbjct: 478 RVFDRFFRGDAVRNSSTHGSGLGLAISRDIVRAHGGEITVSSALGTGATFIVRLPR 533


>gi|197122378|ref|YP_002134329.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
 gi|196172227|gb|ACG73200.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
          Length = 747

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 17/230 (7%), Positives = 57/230 (24%), Gaps = 26/230 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
               L AL  + + + H+I +P+ AI  +++ LD   + ++  +   +           +
Sbjct: 474 ERDRLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVNRLNGVV 533

Query: 68  RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                Y+  +            L    ++++  +    R+++        +  +  ++  
Sbjct: 534 TQFLDYSRPLKPSLAPTQVNEVLEKTFKLLQAEVPESVRLELELAEWLPRVQADAEQLKQ 593

Query: 121 NLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164
               +A  +                               +      +  G      +  
Sbjct: 594 VFLNLALNAFQAMPHGGRLTVSTKLARDELAFWREGARRADVVEIRFRDTGPGI-PDDAR 652

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I      +      +       +    +  ++              L 
Sbjct: 653 ESIFVPFYTTKEKGTGLGLAICQRIVKAQQGTIVVRSAPGEGAEFLIALP 702


>gi|148263292|ref|YP_001229998.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146396792|gb|ABQ25425.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 637

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAI 61
           ++I        +   + S + H++ +P+ A+    E +LD     D+  + +R++   + 
Sbjct: 405 RDITERKEMEQMKDEMISAVSHEMRTPLTAMLGYTEFMLDNEVPADQQREYLRITLHESE 464

Query: 62  IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108
              +             R        +     L +   +               S     
Sbjct: 465 KLNELIGNFLDLQRLRSRKETVTWRPLPLQPLLEETVALFTRVSERHHITLDCPSDLPRI 524

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +++  ++  NL   A    P+GG V ++ +  K+  + +++  G          +I 
Sbjct: 525 CGDNKQLRQVFNNLVSNAVKYSPKGGAVRVAARREKDCVVITVRDEGIGISPQAV-ERIF 583

Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                 +    V  +   +   +  E            L 
Sbjct: 584 ERFYRVNNTACRVFGGTGLGLALVREIVTAHGGEVWVESTLGKGSTFFVSLP 635


>gi|297568592|ref|YP_003689936.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924507|gb|ADH85317.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 601

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 21/231 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           M K +        LVAL  + + + H+I +P+ +I     LL     +   E E  +L+ 
Sbjct: 373 MEKEVQ---RHERLVALGKMAAGVAHEIRNPLSSIKGLATLLASRAGQNPPESETARLLV 429

Query: 55  LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
                        L F R        VD    LG+  Q++             +   +  
Sbjct: 430 GEVERVNRSISELLDFARPQPLNRRPVDLPTLLGNSLQLVAADAQSLGVELKLQPPATEF 489

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                 +    ++LLNL++ +  ++P     +  +  +  +      +   G     PE 
Sbjct: 490 PPVPVDADRLTQVLLNLYLNSLQAMPTGGRLEANLEYRPEQQVVRIKVSDTGQGI-APEI 548

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +  +   +    V  +  ++  ++      D    ++  L 
Sbjct: 549 LPRITDPYFTTKPEGSGLGLALVQKIIDDHGGKMEFTSQPDQGTTVTITLP 599


>gi|308173326|ref|YP_003920031.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606190|emb|CBI42561.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
          Length = 739

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           AK +   L   D   +V  L + I H+I +P+ A+   ++LL    E         +   
Sbjct: 502 AKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSIEGEHSLYFNVITSE 561

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111
                 I  +F+ LA       +       ++     +      V+ ++ ++ TG    +
Sbjct: 562 LKRIESIITEFLILAKPQAILYEEKDVTQIMKDTADLLNAQANLVNVQIHLNLTGNIPPI 621

Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             E  ++      +   ++                 K+  + SL+  G      +K  ++
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPGGGNFYVTIQPSDKDHILISLQDEGTGM-SEDKLKRL 680

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++ R+  E  +    V    L 
Sbjct: 681 GEPFYTTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLP 727


>gi|189426123|ref|YP_001953300.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189422382|gb|ACD96780.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 378

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
                 S  L  L  + + + H++ +P+ ++  + E+L +       + E +++    + 
Sbjct: 153 EEQLRRSERLSTLGEMAAVLAHEVRNPLASLRGTAEILRDDFRPGTPKHEFVEIQIKETE 212

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKID 110
                ++                 + +  + I    + + R +         +       
Sbjct: 213 RLNRVVEEFLRMARQQPGELQRCVVAEELETIVTLTSNEARRRKVTLQLEAANRDLAVNA 272

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  +  LN+ + A  + P GG+VTI+VQ  +      +  +G      E   +I + 
Sbjct: 273 DGEKLRQAFLNIILNALQATPEGGRVTIAVQPQQQNCEIRISDSGPGIN-DEIRQRIFEP 331

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  D   +       +   +   L  E        +   L 
Sbjct: 332 FFTTKPDGTGLGLAVTKKIIEAHGGSLSVESAAGSGTTMVVQLP 375


>gi|15614483|ref|NP_242786.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174538|dbj|BAB05639.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 548

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 65/227 (28%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
               + +    A+  L + + H+I +P+  I   + LL           + ++++     
Sbjct: 312 EQQVIQNEKFSAIGRLSAGLAHEIRNPLTPIIGFVNLLKNESHLDEKAKQYLRIMSDELE 371

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKI 109
                +    +             L  + + +  F+     +          +  T E +
Sbjct: 372 RVRKLVNDFVIVSKPEPPELKKTSLHTLVEQVIRFMESQGSLHNVQMEVNHSIDETDELL 431

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167
             + +  ++L+NL   A  ++ RGG + +              ++  G      +    +
Sbjct: 432 VDASQMKQVLINLLTNAMDAMERGGTIRVETGKDLGNGMFSIKVQDEGCGMSEDQLNQ-L 490

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  D   +       +   +   +              LL 
Sbjct: 491 FNPFFTTKDDGLGLGLSICYRIIKNHGGTINVVSQQGEGSTFEILLP 537


>gi|84684959|ref|ZP_01012859.1| phosphate regulon sensor histidine kinase, putative [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667294|gb|EAQ13764.1| phosphate regulon sensor histidine kinase, putative
           [Rhodobacterales bacterium HTCC2654]
          Length = 341

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 58/234 (24%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64
            + ++ +   + + H++ +P+ AI   +E L      +    +  ++++   +      +
Sbjct: 106 EAGEMRSEFVANVSHELRTPLTAISGFVETLRGPARDDAAAREHFLKIMESETRRMHRLV 165

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSWTGEKIDLS 112
             +        +             +    A++                           
Sbjct: 166 DDLLSLAKVEDTEGLRPTEQQDVAELLLNAALNLQGQADDRLVQLHVRGCDAPVMAPADP 225

Query: 113 RERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
            +  ++  NL   A               +V    +      I ++   G          
Sbjct: 226 DQLTQVFTNLIENAIKYGGSGGEVTVTLSQVQHDPRLRGPGLIVAVTDKGEGIDERHLGR 285

Query: 164 -FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    +      +    +    V  + + ++ RL  E         S  L 
Sbjct: 286 LTERFYRVDDHRSRGMGGTGLGLAIVKHIVNRHRGRLRIESTPGQGSTFSVALP 339


>gi|299541797|ref|ZP_07052120.1| two-component sensor histidine kinase [Lysinibacillus fusiformis
           ZC1]
 gi|298725535|gb|EFI66176.1| two-component sensor histidine kinase [Lysinibacillus fusiformis
           ZC1]
          Length = 621

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 64/235 (27%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +     +   +      S + H++ +P+  + + LE L      +  I    + + +  
Sbjct: 379 TEQEKIEMDRRE----FVSNVSHELRTPLTTMRSYLEALADGAWKDENIAPTFLNVTQTE 434

Query: 57  SMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWT 105
           +   I  +  +   +   +   +    +          I   +           +    +
Sbjct: 435 TERMIRLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSKSDKVQFERLFPETS 494

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 + +  +++ N+   A    P GG +        +     +  +G      E   
Sbjct: 495 FYVEIDTDKITQVIDNIISNAIKYSPDGGNIRFGFTGQDDMLKVMISDDGMGI-PKENVG 553

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           ++    +       +   +  ++  E  +     +   L 
Sbjct: 554 RIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 608


>gi|253571977|ref|ZP_04849382.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838574|gb|EES66660.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 883

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     L+ +    +E  Q + +   +  
Sbjct: 656 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLMVDTEDMEERRQYMDIVEENND 713

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                         VD  +   DI   +      +  +       +  
Sbjct: 714 LLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKARPNVEILFDRHLPECR 773

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G       Q  +    F +   G       +    
Sbjct: 774 IMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLRFYIADTGIGIEPEMQNEIF 833

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +    +  +   +        L 
Sbjct: 834 ERFVKLNSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLP 881


>gi|229120973|ref|ZP_04250215.1| hypothetical protein bcere0016_12820 [Bacillus cereus 95/8201]
 gi|228662633|gb|EEL18231.1| hypothetical protein bcere0016_12820 [Bacillus cereus 95/8201]
          Length = 486

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFYPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 482


>gi|56964475|ref|YP_176206.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56910718|dbj|BAD65245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 590

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLK---------- 65
             + + H++ +P+ +I    E L +  I+D V+  Q   +    +               
Sbjct: 366 FVANVSHELKTPVTSIKGFAETLLDGAIDDPVLSKQFTEIIWKESDRLQMLIVDLLELSK 425

Query: 66  ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 +L        D    + ++ +   +   +   +Q   +       +   +++LN
Sbjct: 426 IENAQFKLDLEDMSLKDITEDVFELVRGKAEEKGMHLHIQEQGSSVIEGDWQRLKQVVLN 485

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176
           L   A +  P GG VT+++++ K+  +  ++  G      E    F +            
Sbjct: 486 LVSNAISYTPSGGHVTVALKEQKDAVVLKVQDTGIGIDPKETLRIFERFYRVDRARSRNS 545

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  LA  +  ++  +  +      S    K
Sbjct: 546 GGTGLGLAIVKHLAEAHHAKIEVQSEEGKGTEFSLTFPK 584


>gi|228945032|ref|ZP_04107393.1| hypothetical protein bthur0007_11980 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814701|gb|EEM60961.1| hypothetical protein bthur0007_11980 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 486

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 63/223 (28%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111
               +    +    T +++    +  I   +   I  +  +                   
Sbjct: 321 INEIVSEFLILGKPTATIEQTYDVRTILNEVSLIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 482


>gi|288555913|ref|YP_003427848.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
 gi|288547073|gb|ADC50956.1| Hybrid signal transduction histidine kinase PAS/PAC [Bacillus
           pseudofirmus OF4]
          Length = 960

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++I        + + L S + H++ +P+ +I    EL+     +   +++ ++ I   + 
Sbjct: 570 RDITKQHEVEQMKSELVSTVSHELRTPLSSILGFTELMLHRKLKPEKQEKYLKTIHKEAN 629

Query: 59  SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEK 108
                +                   S+D    + ++    E +        + ++     
Sbjct: 630 RLTNLINDFLDLQRMESGGQMYTNESLDIRDLISEVLTRFEAYSEKHTLHFINLAEKTII 689

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              S    +++ N+   A    P GG +T ++  +      S+K +G      E      
Sbjct: 690 QGDSERIQQVITNIISNAIKFSPNGGDITTTLASNSTSLFVSVKDDGLGIPENEMKNLFR 749

Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       I    +       +   +   +  E  ++        L 
Sbjct: 750 KFYRIDNSDRKKIGGTGLGLPICKEIVEAHNGTISVESKENEGSTFIIELP 800


>gi|29347243|ref|NP_810746.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339142|gb|AAO76940.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 882

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     L+ +    +E  Q + +   +  
Sbjct: 655 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLMVDTEDMEERRQYMDIVEENND 712

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                         VD  +   DI   +      +  +       +  
Sbjct: 713 LLLQLISDILDLSKIEAGTFDFTEREVDVNLLCEDIVLAMRMKARPNVEILFDRHLPECR 772

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G       Q  +    F +   G       +    
Sbjct: 773 IMSDRNRLHQVISNFVNNALKFTEEGNIRVGYDQLDEAHLRFYIADTGIGIEPEMQNEIF 832

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +    +  +   +        L 
Sbjct: 833 ERFVKLNSFVHGTGLGLSICRSIVEQLGGEIGVDSEPEKGSCFWFTLP 880


>gi|228933922|ref|ZP_04096765.1| hypothetical protein bthur0009_23820 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825618|gb|EEM71408.1| hypothetical protein bthur0009_23820 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 590

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567


>gi|228946252|ref|ZP_04108582.1| hypothetical protein bthur0007_23990 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228813423|gb|EEM59714.1| hypothetical protein bthur0007_23990 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 590

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567


>gi|228927693|ref|ZP_04090742.1| hypothetical protein bthur0010_23990 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229125029|ref|ZP_04254194.1| hypothetical protein bcere0016_53000 [Bacillus cereus 95/8201]
 gi|228658405|gb|EEL14080.1| hypothetical protein bcere0016_53000 [Bacillus cereus 95/8201]
 gi|228831943|gb|EEM77531.1| hypothetical protein bthur0010_23990 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 590

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYADSKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 567


>gi|228915253|ref|ZP_04078847.1| hypothetical protein bthur0012_24730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229091649|ref|ZP_04222850.1| hypothetical protein bcere0021_24540 [Bacillus cereus Rock3-42]
 gi|229184867|ref|ZP_04312058.1| hypothetical protein bcere0004_24250 [Bacillus cereus BGSC 6E1]
 gi|228598520|gb|EEK56149.1| hypothetical protein bcere0004_24250 [Bacillus cereus BGSC 6E1]
 gi|228691594|gb|EEL45346.1| hypothetical protein bcere0021_24540 [Bacillus cereus Rock3-42]
 gi|228844370|gb|EEM89427.1| hypothetical protein bthur0012_24730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 579

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 392 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 451

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 452 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 510

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 556


>gi|218903769|ref|YP_002451603.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218538418|gb|ACK90816.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 595

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYADSKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572


>gi|49479191|ref|YP_036745.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118478020|ref|YP_895171.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196032103|ref|ZP_03099517.1| sensor histidine kinase [Bacillus cereus W]
 gi|196040421|ref|ZP_03107722.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196043690|ref|ZP_03110928.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225864620|ref|YP_002749998.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|301054173|ref|YP_003792384.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|49330747|gb|AAT61393.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|118417245|gb|ABK85664.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|195994854|gb|EDX58808.1| sensor histidine kinase [Bacillus cereus W]
 gi|196025999|gb|EDX64668.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196028906|gb|EDX67512.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|225787029|gb|ACO27246.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|300376342|gb|ADK05246.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 595

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572


>gi|52142860|ref|YP_083969.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51976329|gb|AAU17879.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 595

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572


>gi|89895321|ref|YP_518808.1| hypothetical protein DSY2575 [Desulfitobacterium hafniense Y51]
 gi|89334769|dbj|BAE84364.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 601

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           ++I  +L +        + + H++ +P+  I   LE + +       + E + L+   + 
Sbjct: 371 RDITASLRAEKERRDFMASVTHELRTPLHLIQGYLEAIQDGVIAKEEQTEHIDLVLEEAK 430

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----I 109
                +  ++               +   G I+++   F      + +    +       
Sbjct: 431 RLAKLVMELQELDRFESWKNFEKKEIDLAGFIQELGYRFQGRADELGIHLQMDNGKGVIH 490

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
                  ++ +NL   A    P G  V I + DS+    F+++  G        P  F +
Sbjct: 491 ANRDRLLQVFINLIENAFRHTPEGKSVYIRIIDSEEHIQFNVEDQGEGIPPQALPHIFDR 550

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +           +    V+L+   +   +  E           +L K
Sbjct: 551 FYRVDKSRSRKEGGMGLGLSIVMLIVEAHNGEIKVESEVGKGTTFKVILPK 601


>gi|317151840|ref|YP_004119888.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942091|gb|ADU61142.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 551

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 27/233 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIEDEV--------MQLIR 54
           + S  + AL  L + + H++ +P+  I      L ++L +   +           + +I 
Sbjct: 317 MQSSKMAALGKLAAGVAHEVNNPLTLIREGAGWLKDMLADEDPQTMKNHAEFARSLDMIE 376

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKI 109
           L    A      M         +   + L       I  + ++ +  +  +    +G   
Sbjct: 377 LHVDRAREVTHRMLGFGRRMEPLQENVDLNVLAEQTIRFLRQEALHRNIAITTDMSGNLP 436

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKF 164
            ++ +  ++   +  +   +L   G+       +  +        S++  G      E  
Sbjct: 437 RVTTDGNQLQQVILNILDNALDAVGQQGEIWVGTGTDDERDEVFLSIRDTGPGMPC-ETM 495

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I +    +    +   +       +  +    +  +         +  L +
Sbjct: 496 EHIFEPFYTTKAVGEGTGLGLSICFSIIEKLGGHIEVQSAQGEGSTFTIRLPR 548


>gi|89096799|ref|ZP_01169691.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89088814|gb|EAR67923.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 609

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 69/218 (31%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+  + + LE L      +  I  + + + R  +   I  +  +     
Sbjct: 382 FVANVSHELRTPLTTMRSYLEALAEGAMHDEDIAPQFLNVTRTETERMIRMVNDLLQLSK 441

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 R+   +   VD    + D     ++     +R              +  +++ N
Sbjct: 442 LDSKDYRMKKEWVNFVDFFNRIIDRFDFSKEQNVTFQRNLPEHAAFVEIDEDKLTQVVDN 501

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A    P GG+V+ ++ + + + +  +   G           F +    +      +
Sbjct: 502 IISNALKYSPEGGQVSFNIVEQEEQLLIRISDQGVGIPKDNLDKVFERFYRVDKARTRKL 561

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  ++  E  +     +S  L 
Sbjct: 562 GGTGLGLAIAKEVVEAHDGKIWAESTEGKGTTISFTLP 599


>gi|219669755|ref|YP_002460190.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219540015|gb|ACL21754.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 601

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           ++I  +L +        + + H++ +P+  I   LE + +       + E + L+   + 
Sbjct: 371 RDITASLRAEKERRDFMASVTHELRTPLHLIQGYLEAIQDGVIAKEEQTEHIDLVLEEAK 430

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----I 109
                +  ++               +   G I+++   F      + +    +       
Sbjct: 431 RLAKLVMELQELDRFESWKNFEKKEIDLAGFIQELGYRFQGRADELGIHLQMDNGKGVIH 490

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
                  ++ +NL   A    P G  V I + DS+    F+++  G        P  F +
Sbjct: 491 ANRDRLLQVFINLIENAFRHTPEGKSVYIRIIDSEEHIQFNVEDQGEGIPPQALPHIFDR 550

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +           +    V+L+   +   +  E           +L K
Sbjct: 551 FYRVDKSRSRKEGGMGLGLSIVMLIVEAHNGEIKVESEVGKGTTFKVILPK 601


>gi|308051303|ref|YP_003914869.1| integral membrane sensor signal transduction histidine kinase
           [Ferrimonas balearica DSM 9799]
 gi|307633493|gb|ADN77795.1| integral membrane sensor signal transduction histidine kinase
           [Ferrimonas balearica DSM 9799]
          Length = 692

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLI 53
           + +     +++  LVAL  L + I H+I +P   I  ++EL+     + +      ++LI
Sbjct: 441 LEETRQQMVTNEKLVALGELTAGIAHEINNPTAVILGNIELIKMELSDQDHDLNEEIELI 500

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104
                     ++ +                     L ++  ++   +        + +  
Sbjct: 501 VQQVQRINSIIQSLLQYSRPGDLAMPLERQPVNPILEEMLVLVRHSLRKQMVDVELDLGA 560

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159
           +       ++  ++L+NL + A  +L   G+V          D       ++  +G    
Sbjct: 561 SALVEVNRQQLLQVLINLVVNAAHALEGAGQVRVASGDWMDGDQPKGVWITVADDGCGI- 619

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE  ++I D    +      +       +       L  E       V +  L 
Sbjct: 620 APEVLSRIFDPFFTTRKQGTGLGLALSYGIIRRFGGLLEVESELGKGSVFTIKLP 674


>gi|169831575|ref|YP_001717557.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638419|gb|ACA59925.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 444

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 60/233 (25%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I        +     +   H++ +P+ +I   +E L +            + +I  
Sbjct: 211 LFRDITERRQLEQMRTEFVANASHELRTPLTSIRGFIEALRDGAINEPETARRFLGIIEE 270

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTG 106
            +      +  +        R        V+    +                 ++V    
Sbjct: 271 ETDRLTELVDDLLKLATIEERRNMFGRLPVELPGVVQRAVDTFASRARQKGVALRVELAD 330

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPE-- 162
               +  ++  +      +   ++    K  I+++ +  +      +   G         
Sbjct: 331 GLPPVIGDQKLLTQMFINLLDNAVKFTEKGEITIRAAAAEGGVEVEVLDTGAGIAPEHLP 390

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   G+   T     +    V  +   +  R+            S  L 
Sbjct: 391 RIFERFFRGDKARTQGGTGLGLAIVKHIVEGHGGRIRVMSKPGKGTTFSMFLP 443


>gi|111074994|gb|ABH04850.1| sensory histidine kinase [Heliobacillus mobilis]
          Length = 598

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 10/220 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
           +     L  M+L+  L + + H+I +P+  +   L+LL+           +    +    
Sbjct: 378 ETELLRLERMNLIGQLAAGLGHEIRNPLQTVRGFLQLLENKYQTEREYFDLMIAELDRAN 437

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                 +   K            D +  L  + Q        D ++++  +       +E
Sbjct: 438 YIITEFLSLSKSKSDNLKSLLIDDIVTHLFPLIQSKAFLEEKDVKLELDNSTSIFGDEKE 497

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             +++LNL      ++  G  +TI         + ++   G     PE  +++    V S
Sbjct: 498 LKQLILNLVRNGIEAMKLGKILTIKTFTKGEHVVLAVVDQGAGI-APEILSKLGTPFVTS 556

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +       +A  +  ++  +              
Sbjct: 557 RADGTGLGLAVCYSIAERHNAKIEVDTSP-EGTTFFVKFP 595


>gi|300789402|ref|YP_003769693.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|299798916|gb|ADJ49291.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 602

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 64/229 (27%), Gaps = 20/229 (8%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSM 58
               +        + S I H++ +P+  I   LE  ++  +  +       ++   L   
Sbjct: 354 RRERIEEQRKA--MVSDIAHELRNPLNVIRGRLEAAEDGHLPFDRALSASLLEETVLLQH 411

Query: 59  SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                          +RL      + +    +            V   V+          
Sbjct: 412 IVDDLQDLAAADAGQLRLHPEPLDAAELAGHVAAAHADRAAAGGVTLTVEALGEATLPAD 471

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
                +++ NL   A    P GG+VTI V  + +E   ++   G+     +    F +  
Sbjct: 472 PVRLRQVVGNLVTNAIRHTPPGGRVTIRVSSTVDEVTLAVADTGSGIAAEDLPHVFDRFW 531

Query: 169 D--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +         +    V  L   +   +  E   D     +  L K
Sbjct: 532 RAEKSRSRQTGGSGLGLAIVRHLVAAHGGTVTVESEVDTGSTFTVRLPK 580


>gi|228926464|ref|ZP_04089536.1| hypothetical protein bthur0010_11830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228833288|gb|EEM78853.1| hypothetical protein bthur0010_11830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 486

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 482


>gi|302341450|ref|YP_003805979.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301638063|gb|ADK83385.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 650

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 24/236 (10%)

Query: 2   AKNICFNLSSMD--LVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
            ++    L S    LV  L + + H+I +P+  +     LL    D        +Q I  
Sbjct: 406 EESEKRLLQSEKQALVGRLAAGVAHEINNPLTGVLTFTHLLLRRGDLPAEVVHDLQTIAA 465

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
            +      +K +      T        L  +       +    +    R+      E   
Sbjct: 466 QTERVRKIVKGLLDFSRQTKLEAQPSDLNPLVAAAVKLMTNQALLKGVRLHFDPQEEFPV 525

Query: 111 LSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNE-------NIFSLKINGNLARF 160
           ++ +R++   +L+N+ + A  + P GG+V +  +                ++  G     
Sbjct: 526 MNLDRSQMQGVLINMIINALDATPPGGEVAVITRPGDPARRGGRQGVEILVRDTGCGI-A 584

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   ++ D    +        +       +   +   +            +  L 
Sbjct: 585 PEHLDKLFDPFFTTKEVGQGTGLGLAVSQGVVARHGGEITVRSKPGQGSTFTIWLP 640


>gi|227894304|ref|ZP_04012109.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
 gi|227863881|gb|EEJ71302.1| histidine kinase [Lactobacillus ultunensis DSM 16047]
          Length = 621

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++     + D      S + H++ +P+ ++   +E L      +  I  + +++ +  + 
Sbjct: 369 DVTEQQKNEDSQRQFVSNVSHELRTPLTSLQAYIEALNEGAWKDPKIAPKFLEVTQQETS 428

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106
             I  +  +         V  +           + I     + V                
Sbjct: 429 RMIRMINDLLSLSRMDRGVSKMDLEFVNLNDFVNHILNRFDMIVKTDKNKSHKKKYTINR 488

Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       + +  +++ N+   A    P GG +T+ +  ++N  I S+   G    
Sbjct: 489 ELGSQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGVITVRLTQNQNHVILSISDQGLGIP 548

Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +           +       +   +  R+  +  +         L 
Sbjct: 549 RKDLGKIFDRFYRVDKARSRAQGGTGLGLAIAKEIVEAHHGRIWADSSEGRGSTFYISLP 608


>gi|196040665|ref|ZP_03107964.1| sensor histidine kinase KinD [Bacillus cereus NVH0597-99]
 gi|196028455|gb|EDX67063.1| sensor histidine kinase KinD [Bacillus cereus NVH0597-99]
          Length = 498

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494


>gi|148550730|ref|YP_001260169.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148503149|gb|ABQ71402.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 500

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM 50
           A+     L S       L AL  + S + H++  P+ AI N L+    LL+     ++ +
Sbjct: 250 AEARLQELQSELVHVSRLTALGEMASALAHELNQPLSAIANYLKGSKMLLEREEDRNDRV 309

Query: 51  --------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                        +         F+               + +   +             
Sbjct: 310 IDAVGRAAAEALRAGKIIRRLRDFVARGETERAVESLPKLVEEASALALVGAKEHGIRVQ 369

Query: 103 SWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKI 153
                +ID       +  +++LNL   A  ++   G               +    ++  
Sbjct: 370 HDFSPEIDLVLADKVQIQQVVLNLVRNAIDAMAGNGSGPRALTIAIAPADTDMARVTVAD 429

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            G      +   ++    + +      +       +   +  R+  E  +    V    L
Sbjct: 430 TGPGI-AADVADRLFQPFITTKRTGMGVGLSISRTIVEAHGGRIWAESHEGGGAVFGFTL 488

Query: 214 EK 215
            K
Sbjct: 489 PK 490


>gi|52144002|ref|YP_082826.1| sensor histidine kinase; sporulation kinase [Bacillus cereus E33L]
 gi|118476905|ref|YP_894056.1| sensor histidine kinase, sporulation kinase [Bacillus thuringiensis
           str. Al Hakam]
 gi|196046543|ref|ZP_03113768.1| sensor histidine kinase KinD [Bacillus cereus 03BB108]
 gi|218902541|ref|YP_002450375.1| sensor histidine kinase KinD [Bacillus cereus AH820]
 gi|225863297|ref|YP_002748675.1| sensor histidine kinase KinD [Bacillus cereus 03BB102]
 gi|51977471|gb|AAU19021.1| sensor histidine kinase; possible sporulation kinase [Bacillus
           cereus E33L]
 gi|118416130|gb|ABK84549.1| sensor histidine kinase, possible sporulation kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196022727|gb|EDX61409.1| sensor histidine kinase KinD [Bacillus cereus 03BB108]
 gi|218538858|gb|ACK91256.1| sensor histidine kinase KinD [Bacillus cereus AH820]
 gi|225786110|gb|ACO26327.1| sensor histidine kinase KinD [Bacillus cereus 03BB102]
          Length = 498

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494


>gi|228990217|ref|ZP_04150186.1| hypothetical protein bpmyx0001_9820 [Bacillus pseudomycoides DSM
           12442]
 gi|228769500|gb|EEM18094.1| hypothetical protein bpmyx0001_9820 [Bacillus pseudomycoides DSM
           12442]
          Length = 542

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 19/221 (8%), Positives = 62/221 (28%), Gaps = 11/221 (4%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
            +     ++  V  L + I H++ +P+  I   ++LL +     ++    +         
Sbjct: 313 ELLKKSDTLKAVGQLAAGIAHEVRNPLTVIKGFMQLLQQEVGEDKEYFRLIFSEIRGIET 372

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------DLSRE 114
           I  +F+ +A       +       ++ V+           +  T               +
Sbjct: 373 ILQEFLSIAKPNVVVFEPKNLCTILDNVVALISTQAIMKNIRITLNMDFENLLVECCEIQ 432

Query: 115 RAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             ++  N+   +  ++             +  E +  +   G     PE+  ++ +    
Sbjct: 433 LKQVFFNILQNSIEAIQNGQEITINVKTHNSTEVMICISDKGVGI-PPERIKRLGEPFYS 491

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +   +  ++           +   L 
Sbjct: 492 TKEKGTGVGLMISYQVIESHGGKINIRSQVGKGTTVIVFLP 532


>gi|229160386|ref|ZP_04288384.1| hypothetical protein bcere0009_11800 [Bacillus cereus R309803]
 gi|228623110|gb|EEK79938.1| hypothetical protein bcere0009_11800 [Bacillus cereus R309803]
          Length = 486

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 60/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVYIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI+V ++K      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSSDTLTITVTNNKTHAQLQIIDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  + I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSIENEGTTVHIEIP 482


>gi|256851720|ref|ZP_05557108.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260661562|ref|ZP_05862474.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 115-3-CHN]
 gi|256615678|gb|EEU20867.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 27-2-CHN]
 gi|260547619|gb|EEX23597.1| two-component system response regulatory system histidine kinase
           [Lactobacillus jensenii 115-3-CHN]
          Length = 617

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 68/243 (27%), Gaps = 37/243 (15%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L      +  I  + +++ +  
Sbjct: 369 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEE 421

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102
           +   I  +  +         V  +             +     + V              
Sbjct: 422 TERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYS 481

Query: 103 ------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                 +        + +  +++ N+   A    P GG +T+ +  S+N+ I S+   G 
Sbjct: 482 IKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQIILSISDQGL 541

Query: 157 LARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    F +    +           +       +   +K ++  +  +        
Sbjct: 542 GIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYI 601

Query: 212 LLE 214
            L 
Sbjct: 602 SLP 604


>gi|229114872|ref|ZP_04244285.1| hypothetical protein bcere0017_11690 [Bacillus cereus Rock1-3]
 gi|228668564|gb|EEL23993.1| hypothetical protein bcere0017_11690 [Bacillus cereus Rock1-3]
          Length = 478

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 58/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 253 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 312

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 313 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 372

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V D++      +   G           +    
Sbjct: 373 KDHMKQVVLNITKNAIEAMTSSDTLTIVVTDNETHAQLQIIDTGKGI-PKHIQKHLFHPF 431

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 432 FTNKDTGTGLGLVICKRIVEMYDGHIFIDSKENKGTTVHIEIP 474


>gi|229172073|ref|ZP_04299638.1| hypothetical protein bcere0006_11870 [Bacillus cereus MM3]
 gi|228611416|gb|EEK68673.1| hypothetical protein bcere0006_11870 [Bacillus cereus MM3]
          Length = 487

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     +  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 262 ERQQNEIQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 321

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V        +      
Sbjct: 322 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHSVHIRCS 381

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  + ISV +++      +   G           +    
Sbjct: 382 KDHMKQVVLNITKNAIEAMNSGDTLIISVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 440

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  + I++    +   + 
Sbjct: 441 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSIENEGTTVHIEIP 483


>gi|282933548|ref|ZP_06338918.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|297205338|ref|ZP_06922734.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
 gi|281302291|gb|EFA94523.1| sensor protein kinase WalK [Lactobacillus jensenii 208-1]
 gi|297149916|gb|EFH30213.1| sensor histidine kinase [Lactobacillus jensenii JV-V16]
          Length = 620

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 68/243 (27%), Gaps = 37/243 (15%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L      +  I  + +++ +  
Sbjct: 372 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYIEALNDGAWKDPEIAPQFLEVTQEE 424

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102
           +   I  +  +         V  +             +     + V              
Sbjct: 425 TERMIRMINDLLSLSRMDRGVVKMDLEWVNFNDFLSHVLNRFDMIVKNDEKDQTGQKKYS 484

Query: 103 ------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                 +        + +  +++ N+   A    P GG +T+ +  S+N+ I S+   G 
Sbjct: 485 IKRKITNQDLWVEIDTDQMMQVIDNIMNNAIKYSPDGGVITVGLTQSQNQIILSISDQGL 544

Query: 157 LARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    F +    +           +       +   +K ++  +  +        
Sbjct: 545 GIPKKDLNKIFDRFYRVDKARSREQGGTGLGLAIAKEIVEAHKGKIWADSQEGKGSTFYI 604

Query: 212 LLE 214
            L 
Sbjct: 605 SLP 607


>gi|157692126|ref|YP_001486588.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157680884|gb|ABV62028.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 453

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSS 57
             N    + +  L     + + I H++ +P+ +++  L+L+        D    +     
Sbjct: 217 RSNQQLQMQAQKLAVAGQIAAGIAHEVRNPLTSVNGFLQLMKTQYPERTDYFDIIFSEIK 276

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----- 112
               +  + + LA   +     +     +EQVI           +               
Sbjct: 277 RIDFVLSELLVLAKPQSVHFQEVQLHELLEQVITLLKTNAVLSNIDLKQPFKRQDAGAIL 336

Query: 113 ---RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +NL   A  ++P GG + IS +   NE   +++  G      +   +I D
Sbjct: 337 ADANQMKQLFINLIKNAIEAMPEGGSIYISTEKVLNEWKITIQDEGKGMSEEDI-QKIYD 395

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +       +  ++  R+               L 
Sbjct: 396 PFFSTKKEGTGLGLTICATILKDHHGRMDVSSELGKGTAFHIYLP 440


>gi|147676786|ref|YP_001211001.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146272883|dbj|BAF58632.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 471

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 62/216 (28%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S   H++ +P+  I  ++ELL      +    +E +  I          +  + +   
Sbjct: 252 FVSDASHELRTPLTTIKGNVELLKKMGDADPETRNEALNDIAGEVERMSRLVSDLLVLAR 311

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----------SRERAKILLN 121
              S+        +  ++ +       +    T    D                 ++LL 
Sbjct: 312 ADASLKLKKEAVALAPLLAEAARRGSVLAGGLTFSAGDFSALGEAEVLGDKDYLMQLLLI 371

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178
           L   A    P GG+V +  Q   +    S+  NG      +    F +    +       
Sbjct: 372 LIENAVRYTPPGGEVRLEAQAEGDCVEISIIDNGIGIAEKDLPHIFERFYRADKVRFSSG 431

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +  E+   ++ +  +      +  L 
Sbjct: 432 SGLGLAIARWIVEEHGGTIIVKSKEGEGSTFTVHLP 467


>gi|323490770|ref|ZP_08095972.1| two component system histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323395652|gb|EGA88496.1| two component system histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 462

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 64/216 (29%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I    ++L+     +   +            L  +         +D 
Sbjct: 242 SSISHELRTPLTYIKGYADILERGDTTEREREEYLSIIREETAHLTSLIGNLFDLAKLDR 301

Query: 80  LIGLGDIEQVI---------------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                + ++V                 +   +   VQ S   +    S    ++LLN+  
Sbjct: 302 NQFAIEQKKVSIAELLNSVALLVKPAFEEKQITLSVQCSEDLQAYVDSERIQQVLLNILD 361

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179
            A      G  V I+  + +N+    ++  G      E    F ++     +        
Sbjct: 362 NARKHSFSGSDVRITCTEEENKIAIRIRDEGQGIPEDELPFVFDRLYRVEKSRSRERGGS 421

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +       +   +  ++  +        ++  L++
Sbjct: 422 GLGLAIAKEIVESHGGQINIDSQVGEGTTVTVRLKR 457


>gi|299136245|ref|ZP_07029429.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX8]
 gi|298602369|gb|EFI58523.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX8]
          Length = 473

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 59/228 (25%), Gaps = 18/228 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSL--------------ELLDEVGIEDEVM 50
           +     S  L +++   I H++ +P+ +I  S+              ELL E+  +++ +
Sbjct: 244 VEAAQESERLRSMILDSITHELRTPVASIKTSIDKLLEANAESAESHELLTEISEQNDRL 303

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +   ++                  +  +I                 +         + 
Sbjct: 304 DQLVTEAVEMAQLDTQQVSMDVSPQQLSDMIDAAIETAGARLADHEIIKRIPEDLPCVVA 363

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 K++ NL   A      G  + ISV+        S+   G      E+       
Sbjct: 364 DPLRIEKVIYNLLENAAKYSAPGQPIYISVEVRGQCASCSIADRGIGIDPAEQPLVFDKL 423

Query: 171 NVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    I    +       +   +   +          V +  L 
Sbjct: 424 YRSRKRTAHIPGTGMGLAICRAIVEAHNGTISVTSQPGQGSVFTFTLP 471


>gi|194292456|ref|YP_002008363.1| histidine kinase of the two-component signal transduction system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193226360|emb|CAQ72309.1| Histidine kinase of the two-component signal transduction system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 684

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
           +       ++S  L     L + + H+I +PI  I  +L++  +            ++LI
Sbjct: 439 LRATRQQLITSEKLALAGQLTAGVAHEINNPIAVIQGNLDVARDILGPAADPVRHELRLI 498

Query: 54  RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSW 104
                   +    +            T  +D     G    ++   +    +   +  + 
Sbjct: 499 DEQVRRIYLLTNRLLQFVRPEAYAGNTERLDVGEVAGGCVDLVRHMLKDAAIRVELAFTA 558

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK 163
           T        E  ++++NL   A  ++P GG +T++ QD         ++  G   R  + 
Sbjct: 559 TRRVRISRSELQQVIVNLLTNAIHAMPDGGTLTLATQDWDAHGVTLHVRDTGRGIRAEDL 618

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                            +       L      R+  E            L
Sbjct: 619 PNLFNPFFTTKKQMGTGLGLSISYALVERYGGRITVESTVGQGAEFIVWL 668


>gi|324326617|gb|ADY21877.1| hypothetical protein YBT020_13225 [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 595

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDELSTEKKNLYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 572


>gi|229196820|ref|ZP_04323561.1| hypothetical protein bcere0001_23750 [Bacillus cereus m1293]
 gi|228586543|gb|EEK44620.1| hypothetical protein bcere0001_23750 [Bacillus cereus m1293]
          Length = 579

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 392 RIEAILQEFLSIAKTDELSTEKKNLYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 451

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 452 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 510

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 556


>gi|89893568|ref|YP_517055.1| hypothetical protein DSY0822 [Desulfitobacterium hafniense Y51]
 gi|89333016|dbj|BAE82611.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 457

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQ 51
           M+  +   + +++    L   L S + H++ +P+  I    E + +        E   ++
Sbjct: 215 MSAELKEKIDAIERYDRLRQELLSDVSHELRTPLTVIQGYTEAMQDGLVKSKEQEQHYLK 274

Query: 52  LIRLSSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           L+          ++ ++                   +    I +  ++   E      + 
Sbjct: 275 LVIDEIERLRRLVEDLQDLKGLEAMDSINDMDYVVMNKLVQISVERLKYFAESKEIQLEV 334

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           +           S    ++L NL   A       G V I +   K+    ++K +G+   
Sbjct: 335 IIPEKQITIWGNSDRLKQVLTNLADNAIKHSDSKGNVRIELGTEKSWAYIAVKDSGSGIP 394

Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    + +    +           +    V  +   +  ++  E    +    +    
Sbjct: 395 KEELQNIWERFYKVDKSRSRRGTGTGLGLSIVKRITEMHSGKVAVESKLGNGARFTVYFP 454


>gi|116623716|ref|YP_825872.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226878|gb|ABJ85587.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 822

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 70/229 (30%), Gaps = 17/229 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        M+ +  L   + HD  + +  I+    +L +       E + ++ I  +  
Sbjct: 319 EEQLVQAQKMESIGRLAGGVAHDFNNLLTVINGYSRMLLDAPPSEPPERDSLEEIHRAGE 378

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDL 111
            A    + +            ++    + + I+  +       +                
Sbjct: 379 RAAGLTQQLLAFSRKQILQPRVLDCSRVVREIQSMLVRLVGEDIDLKVTLCDAPATVCAD 438

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEKFTQIV 168
             +  ++++NL + A  ++PRGG + I     +   +    ++  +G      E+  +I 
Sbjct: 439 RHQLEQVIMNLAVNARDAMPRGGTMHIETSMMEGSVSHVTLAVSDSGAGM-GEEQQRRIF 497

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +        +    +  +  ++   +  E            L K
Sbjct: 498 EPFFTTKEIGKGTGLGLSIIQGIVQQSGGSIEVESEPGCGSTFRIFLPK 546


>gi|228985742|ref|ZP_04145892.1| hypothetical protein bthur0001_24320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773914|gb|EEM22330.1| hypothetical protein bthur0001_24320 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 579

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 332 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 392 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTDSKDIIIEC 451

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 452 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 510

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGIGTTVTIYLPK 556


>gi|229156231|ref|ZP_04284327.1| hypothetical protein bcere0010_24200 [Bacillus cereus ATCC 4342]
 gi|228627106|gb|EEK83837.1| hypothetical protein bcere0010_24200 [Bacillus cereus ATCC 4342]
          Length = 590

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLMNTKAIMTNIQVELYTDSKDIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMPDGGEISIHIKEIGKDGIIISVIDKGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGIGTTVTIYLPK 567


>gi|228914005|ref|ZP_04077627.1| hypothetical protein bthur0012_12420 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229090387|ref|ZP_04221630.1| hypothetical protein bcere0021_12160 [Bacillus cereus Rock3-42]
 gi|229183627|ref|ZP_04310850.1| hypothetical protein bcere0004_11990 [Bacillus cereus BGSC 6E1]
 gi|228599870|gb|EEK57467.1| hypothetical protein bcere0004_11990 [Bacillus cereus BGSC 6E1]
 gi|228692970|gb|EEL46688.1| hypothetical protein bcere0021_12160 [Bacillus cereus Rock3-42]
 gi|228845610|gb|EEM90639.1| hypothetical protein bthur0012_12420 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 486

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 482


>gi|258591619|emb|CBE67920.1| putative Nitrogen assimilation transcription regulation protein
           (ntrB) (synonyms:glnR, glnL) [NC10 bacterium 'Dutch
           sediment']
          Length = 405

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 67/235 (28%), Gaps = 24/235 (10%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RL 55
           + +   L  S  L AL  + + + H+I +P+  +  + +LL+        ++        
Sbjct: 149 RELEERLQRSDRLAALGTVAAGVAHEIRNPLAGLRGAAQLLEGEPDFPPALREYTSVIVK 208

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS--- 112
                   ++ +       G V     L +I   +                 + D     
Sbjct: 209 EVDRLGAIVERLLSFATPRGPVLRSCNLHEILDGLFFLERAPLGAAKVTIQRQYDPQLPE 268

Query: 113 -----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF--------SLKINGNLAR 159
                 E  ++ LNL      ++P GG +T+  +  ++             +   G+   
Sbjct: 269 ILADPSEIQQLFLNLIHNGVEAMPDGGDLTVRTRYERSVKRCGGRSVAVVEIIDRGSG-F 327

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   ++      +      +     + +  ++   +               L 
Sbjct: 328 DPEVERRLFTPFFTTKERGTGLGLAICLRIVEDHGGAMEATSSPGRGSRFCVWLP 382


>gi|20091095|ref|NP_617170.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916193|gb|AAM05650.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 887

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 63/244 (25%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELL------DEVGIED 47
            K +   L    L A           + + H++ +P+ AI    EL+      +   +  
Sbjct: 316 RKKVEEELLQAKLAAEGANRAMSEFLATMSHELRTPLTAIIGFSELMLGEATGEFDELNR 375

Query: 48  EVMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           + +  I  S    +  +             M L   +    D       I   +     +
Sbjct: 376 KFLGHISNSGKHLLSLINSVIDLSRIEAGKMDLEPDFFSLYDIFADTKSISSPLALKKNI 435

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                V              +I+ NL   A    P GG V +  + S+N    ++   G 
Sbjct: 436 SMDFNVESDFLIYADRTRFKQIMYNLVSNAIKFTPAGGSVEVVGRRSENRIRVTVSDTGI 495

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E    +               +S  +           +  R+  E         +
Sbjct: 496 GISQDEIK-HLFKPFKQINFALSREYESTGLGLVLSKNFVEMHGGRIWVESEPGKGSTFT 554

Query: 211 ALLE 214
             + 
Sbjct: 555 FEVP 558


>gi|283853532|ref|ZP_06370772.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio sp. FW1012B]
 gi|283571071|gb|EFC19091.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio sp. FW1012B]
          Length = 590

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 71/228 (31%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSM 58
            +          L AL  L + + H+I +P+ +I    +  +    E     +L  + + 
Sbjct: 355 RRLQEEVRRKEKLAALGSLAAGVAHEIRNPLSSIKGFAKYFEGQCAEGSQGRELAAVMAQ 414

Query: 59  SAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGE----- 107
                 + +     +    D          L +    +    A  K++ V++        
Sbjct: 415 EVDRLNRVITELLDFARPSDLKTRSTDVGSLIEHSLRLVRQDAEGKKITVTFDRNAGLPV 474

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQ 166
                    + LLNL++ A  ++  GG + +             ++ +G     PE  + 
Sbjct: 475 IAIDPDRLTQALLNLYLNAIQAMENGGTLAVRAAADGRGGVRIEVEDSGKGI-APESLSS 533

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +      +    V  +   ++  +  +   D     + LL 
Sbjct: 534 IFNPYFTTKSSGTGLGLAIVQKIIEAHRGEVKVKSTPDRGTTFNILLP 581


>gi|221322739|ref|ZP_03604033.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
          Length = 738

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49
            K +   L   D   +V  L + I H+I +P+ A+   ++LL      D           
Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSE 560

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEK 108
           ++ I       +I  K   + +        +    D+     +   V  ++  +      
Sbjct: 561 LKRIESIITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLIDDIPPI 620

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A   +P GG + ++++       + SLK  G      +K  ++
Sbjct: 621 YCEPNQLKQVFINILKNAIEVMPDGGNIFVTIKALDQDHVLISLKDEGIGM-TEDKLKRL 679

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++  ++ E  +    V    L 
Sbjct: 680 GEPFYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHITLP 726


>gi|16078417|ref|NP_389236.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309216|ref|ZP_03591063.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313544|ref|ZP_03595349.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318466|ref|ZP_03599760.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|321315107|ref|YP_004207394.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|81341919|sp|O31661|KINE_BACSU RecName: Full=Sporulation kinase E; AltName: Full=Sensor histidine
           kinase E
 gi|2633724|emb|CAB13226.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|291483886|dbj|BAI84961.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
 gi|320021381|gb|ADV96367.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 738

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 76/227 (33%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49
            K +   L   D   +V  L + I H+I +P+ A+   ++LL      D           
Sbjct: 501 RKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGSVEGDYALYFNVITSE 560

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEK 108
           ++ I       +I  K   + +        +    D+     +   V  ++  +      
Sbjct: 561 LKRIESIITEFLILAKPQAIMYEEKHVTQIMRDTIDLLNAQANLSNVQMQLDLIDDIPPI 620

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A   +P GG + ++++       + SLK  G      +K  ++
Sbjct: 621 YCEPNQLKQVFINILKNAIEVMPDGGNIFVTIKALDQDHVLISLKDEGIGM-TEDKLKRL 679

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++  ++ E  +    V    L 
Sbjct: 680 GEPFYTTKERGTGLGLMVSYKIIEEHQGEIMVESEEGKGTVFHITLP 726


>gi|328911399|gb|AEB62995.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 739

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           AK +   L   D   +V  L + I H+I +P+ A+   ++LL    E         +   
Sbjct: 502 AKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSIEGEHSLYFNVITSE 561

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111
                 I  +F+ LA       +       ++     +      V+ ++ ++ TG    +
Sbjct: 562 LKRIESIITEFLILAKPQAILYEEKDVTQIMKDTADLLNAQANLVNVQIHLNLTGNIPPI 621

Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             E  ++      +   ++                 K+  + SL+  G      +K  ++
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQPSDKDHILISLQDEGTGM-SEDKLKRL 680

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++ R+  E  +    V    L 
Sbjct: 681 GEPFYTTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLP 727


>gi|229000253|ref|ZP_04159822.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
 gi|229007776|ref|ZP_04165364.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228753484|gb|EEM02934.1| hypothetical protein bmyco0002_46550 [Bacillus mycoides Rock1-4]
 gi|228759585|gb|EEM08562.1| hypothetical protein bmyco0003_48060 [Bacillus mycoides Rock3-17]
          Length = 611

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 384 FVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 443

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   V +       +      + +  ++L N
Sbjct: 444 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFSKKSRFIDMDADKITQVLYN 503

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D ++    S+   G      E   +I +            
Sbjct: 504 IISNALKYSPEGGTVTYRLRDREDMLEISVSDQGMGI-PKENVEKIFERFYRVDKARSRQ 562

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 563 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 601


>gi|312889647|ref|ZP_07749196.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297869|gb|EFQ74989.1| multi-sensor signal transduction histidine kinase [Mucilaginibacter
           paludis DSM 18603]
          Length = 656

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 59/209 (28%), Gaps = 18/209 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            H++ +P+ ++   L++L+    +       ++ ++ +   +          ++  G   
Sbjct: 445 SHELKTPLTSMSGFLQILERTVPDGIAKSFAEKALKQLAKLNELVNDLFDISKIQAGKLQ 504

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSRERAKILLNLFMVAHASL 130
                  L D+   I D                             ++L NL   A    
Sbjct: 505 LNFEPFDLSDLLDEITDTFEQTHPHYNLKMAADGELLVSGDKMRLEQVLTNLLGNAVKYA 564

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYY 185
           P   +V++    + NE   S+K  G     PE    I                  +  Y 
Sbjct: 565 PDAREVSMIAIRTGNEVRISVKDQGPGI-LPENQQHIFSQFYRVKEQERKTSGLGLGLYI 623

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +  R+  E    H    +  L 
Sbjct: 624 SKDIIDRHGGRIWVESTPGHGATFTFSLP 652


>gi|258516116|ref|YP_003192338.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779821|gb|ACV63715.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 557

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 72/241 (29%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQ 51
            K     + S  L A+  + + + H++ +P+  +  + +LL        ++    + +  
Sbjct: 311 EKMKAQLVQSAKLAAIGEMAAGVAHELNNPMTVMIGNAQLLLRELYEKDEDDSTSEILQD 370

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106
           ++        I    +  +   +    S      +E  +           +  T      
Sbjct: 371 IVSCGLRCKKIIQNLLSFSRQDSYPYTSTNLNDVVEHALSLTKYQINNNNIDITFAAAKN 430

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------SKNENIFSLKING 155
                  + +  ++++N  + A  +L         V+               + S++ NG
Sbjct: 431 IPPVFANTHQLEQVIINFLLNARDALDTDLGREKCVEILTSVREDELGHRWAMVSVRDNG 490

Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE  T+I +    S        +     + +A  +   +  +         + +L
Sbjct: 491 PGI-LPENLTKIFNPFFTSKEASKGTGLGLSVSLGIAQAHNGTIEVDSETGRGSKFTLVL 549

Query: 214 E 214
            
Sbjct: 550 P 550


>gi|251795528|ref|YP_003010259.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247543154|gb|ACT00173.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 470

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 74/229 (32%), Gaps = 16/229 (6%)

Query: 1   MAKNICFN--LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIR 54
           M +N      L +  L A+  L + I H+I +P+ ++   + L+++   G+ +    +++
Sbjct: 229 MQENQNKTKLLQAEKLTAVGQLAASIAHEIRNPLTSLKGFVHLIEQAVTGVNENYFTIMK 288

Query: 55  LSSMSAIIRLK---FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                  +      ++          + +  +     ++    A+   V++         
Sbjct: 289 DELRRIELITSELLYLAKPQAQAFKDEQICQIIQDVNLLMSSQALMNNVEIRVPNLIGLP 348

Query: 112 SRER-----AKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFT 165
                     ++ +NLF  A  ++P GG + I     S    +  +   G      E   
Sbjct: 349 PVRCVAAQLKQVFINLFKNAMEAMPSGGVIDIQAFSPSPEMLMIQVSDTGKGI-PQELIA 407

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I      +  +   +       + H +   L     D     +   L 
Sbjct: 408 KIGSPFYTTKENGTGLGMMATQQIIHSHGGTLDITSTDGKGTTIHICLP 456


>gi|91202234|emb|CAJ75294.1| similar to histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 395

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 60/236 (25%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58
           +     L     L +   + + H++ +P+ AI    E+L +     I DE  + +     
Sbjct: 150 QKTNIALEKAYRLKSEFLATMSHELRTPLNAIIGFAEVLKDGLVGPINDEQREYVDDIYS 209

Query: 59  SAIIRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           S    L  +                              L  +  +        K    S
Sbjct: 210 SGKHLLNMINNVLDISKIEAGKLELKYEEICVKETIDDVLNTVSGIANKKNITIKNTIQS 269

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +    +  +IL NL   A    P+ G V I          F++   G   +  + 
Sbjct: 270 DIPTFVVDQLKLKQILFNLLSNAIKFTPKNGNVCIDTTLKDLYVQFAIADTGIGIKQEDI 329

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +          +   +       L   +   +  E         + +L 
Sbjct: 330 EKIFEAFSQVDSSLARNYEGAGLSLALTKRLVELHGGEIWVESFYGKGSTFTFILP 385


>gi|240138480|ref|YP_002962952.1| PAS/PAC sensor signal transduction histidine kinase (fragment)
           [Methylobacterium extorquens AM1]
 gi|240008449|gb|ACS39675.1| PAS/PAC sensor signal transduction histidine kinase (fragment)
           [Methylobacterium extorquens AM1]
          Length = 511

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%)

Query: 2   AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED 47
            +     L  +         L A+  + S + H++  P+ AI N L     LL+    E 
Sbjct: 259 RQETEARLQELQSELVHVSRLTAMGEMASTLAHELNQPLTAITNYLKGCRRLLERSEDEH 318

Query: 48  ---------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFI 94
                            +        +F+               + +   +      +  
Sbjct: 319 APTIREAVNHAADQAIRAGQIIRRLREFVSRGESEPHVHHLPKLIEEASALALIGTIENG 378

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSL 151
                         +    +  +++LNL   A  ++    +      +V  +      S+
Sbjct: 379 VRATFRLDPDADVALADRIQIQQVVLNLIRNAIEAMQDSSQRELVVATVARTDGMVEVSV 438

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              G     PE  +Q+    V +      +       +   +  R+  E       V   
Sbjct: 439 SDTGTGI-APEVASQLFQPFVTTKRHGMGVGLSICRTIVEAHGGRIWVESEPGKGTVFRF 497

Query: 212 LL 213
            L
Sbjct: 498 TL 499


>gi|228932715|ref|ZP_04095588.1| hypothetical protein bthur0009_11910 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826973|gb|EEM72734.1| hypothetical protein bthur0009_11910 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 479

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 254 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 313

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 314 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 373

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 374 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 432

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 433 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 475


>gi|254685207|ref|ZP_05149067.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254722614|ref|ZP_05184402.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254737658|ref|ZP_05195361.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743162|ref|ZP_05200847.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254751973|ref|ZP_05204010.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|291612197|ref|YP_019277.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|224552860|gb|AAT31752.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
          Length = 499

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 252 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 311

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 312 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 371

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 372 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PAERIKRLGE 430

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 431 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 476


>gi|49185464|ref|YP_028716.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|270000560|ref|NP_844998.2| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|49179391|gb|AAT54767.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|269850257|gb|AAP26484.2| sensor histidine kinase [Bacillus anthracis str. Ames]
          Length = 509

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 262 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 321

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 322 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 381

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 382 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PAERIKRLGE 440

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 441 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 486


>gi|65319942|ref|ZP_00392901.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 316

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 69  KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 128

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 129 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 188

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 189 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PAERIKRLGE 247

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 248 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 293


>gi|229133469|ref|ZP_04262296.1| hypothetical protein bcere0014_23880 [Bacillus cereus BDRD-ST196]
 gi|228649869|gb|EEL05877.1| hypothetical protein bcere0014_23880 [Bacillus cereus BDRD-ST196]
          Length = 590

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 343 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 402

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 403 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 462

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  G        +  K   I S+   G      E+  ++ +
Sbjct: 463 SENQLKQVFINILQNSIEAMLDGGKISIHIKEIHKKGVIISVIDEGIGI-PEERIKRLGE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 522 PFYSTKEKGTGIGLMLSYKIIEGHQGTISIMSEVGVGTTVTIYLPK 567


>gi|229167477|ref|ZP_04295215.1| hypothetical protein bcere0007_24400 [Bacillus cereus AH621]
 gi|228616039|gb|EEK73126.1| hypothetical protein bcere0007_24400 [Bacillus cereus AH621]
          Length = 614

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 367 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 426

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 427 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 486

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  G        +  K   I S+   G      E+  ++ +
Sbjct: 487 SENQLKQVFINILQNSIEAMLDGGKISIHIKEIHKKGVIISVIDEGIGI-PEERIKRLGE 545

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 546 PFYSTKEKGTGIGLMLSYKIIEGHQGTISIMSEVGVGTTVTIYLPK 591


>gi|115377667|ref|ZP_01464861.1| cell cycle histidine kinase CckA [Stigmatella aurantiaca DW4/3-1]
 gi|310824444|ref|YP_003956802.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365329|gb|EAU64370.1| cell cycle histidine kinase CckA [Stigmatella aurantiaca DW4/3-1]
 gi|309397516|gb|ADO74975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 502

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 73/231 (31%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +A+     + +  + A+  L   + H+I +P+  I    + +D    E++ M+L   S +
Sbjct: 264 LAEAQEQLVQTGKMAAVGQLAGGVAHEINNPLAVILGFAQGMDRRVPENDPMRLPVRSIV 323

Query: 59  SA--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKI 109
                        L F R+      SVD    +     ++E      + ++   +     
Sbjct: 324 REALRCKNLVQELLTFSRVGKKNIESVDLNALVRSTLVLVEARARTQEVKILQDFAATLP 383

Query: 110 DLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFT 165
            L   + ++   L  +   +L            +           +   G+     E  +
Sbjct: 384 ILQGNKTQLQQVLVNLGTNALDVMKGGGTLTVRTYLQGTESVCLEVTDTGSGI-PEEVRS 442

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +    +   +    V  +  +++ ++  E        +   L 
Sbjct: 443 RIFDPFFTTKPVGEGTGLGLSLVYEIVQQHRGQIEVESQIGVGTTMRVKLP 493


>gi|89894811|ref|YP_518298.1| hypothetical protein DSY2065 [Desulfitobacterium hafniense Y51]
 gi|89334259|dbj|BAE83854.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 533

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 64/221 (28%), Gaps = 12/221 (5%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQLI 53
                L  ++LV  + + I H+I +P+  +   L+L+ E   +             +   
Sbjct: 306 TEMVRLDRLNLVGQMAAGIAHEIRNPMTTVRGYLQLIGEKTQDMGQKSTLHFMIEELDRA 365

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  +   K  +  +        L  L  + +          R       +     +
Sbjct: 366 NTIIKEFLTLAKSHKPNYQVFNLNTLLQNLHPLIEADSFTQNKHIRFTPGDIPDIGISPK 425

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  +++LN+      ++  GG +TI      +  + ++K  G+     E   ++      
Sbjct: 426 DITQMVLNICRNGLEAMSEGGCLTIQTYKKNHTVVLAIKDEGHGI-PKELLEKLGTPFFT 484

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +A  +  R+                 
Sbjct: 485 TKESGTGLGLSICYKIAKSHNARIDVLSSP-EGTQFLISFP 524


>gi|163940454|ref|YP_001645338.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163862651|gb|ABY43710.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 595

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 348 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 407

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 408 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 467

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  G        +  K   I S+   G      E+  ++ +
Sbjct: 468 SENQLKQVFINILQNSIEAMLDGGKISIHIKEIHKKGVIISVIDEGIGI-PEERIKRLGE 526

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 527 PFYSTKEKGTGIGLMLSYKIIEGHQGTISIMSEVGVGTTVTIYLPK 572


>gi|229087144|ref|ZP_04219294.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
 gi|228696212|gb|EEL49047.1| hypothetical protein bcere0022_37170 [Bacillus cereus Rock3-44]
          Length = 470

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +PI +I    E L +  +E+       + +I   S      ++ +       
Sbjct: 249 ANVSHELKTPITSIKGFSETLLDGAMENQQFCEHFLHIILKESERMQGLIEDLLDLSKIE 308

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   G     + L  +  + +       +  +V V      I       +I +NL 
Sbjct: 309 QQGFKLNMGTVDMKELLGEIKMVLENKSQEKEISLQVDVLRHVSVIGDPSRLKQIFINLV 368

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++++ + ++     +   G      E   +I +              
Sbjct: 369 NNAIVYTPAGGTVSVALLEDEHNAYIKVSDTGIGISTEEIP-RIFERFYRVDKARSRNTG 427

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +         +  L K
Sbjct: 428 GTGLGLSIVKHLVEAHHGTITVDSTVGEGTTFTVALPK 465


>gi|229095921|ref|ZP_04226898.1| hypothetical protein bcere0020_11710 [Bacillus cereus Rock3-29]
 gi|228687492|gb|EEL41393.1| hypothetical protein bcere0020_11710 [Bacillus cereus Rock3-29]
          Length = 478

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 253 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 312

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR- 113
               +    +    T  ++    +  I       +  +    +    +      + +   
Sbjct: 313 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHHVHIRCS 372

Query: 114 --ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V D++      +   G           +    
Sbjct: 373 KDHMKQVVLNITKNAIEAMTSSDTLTIVVTDNETHAQLQIIDTGKGI-PKHIQKHLFHPF 431

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 432 FTNKDTGTGLGLVICKRIVEMYDGHIFIDSKENKGTTVHIEIP 474


>gi|169830174|ref|YP_001700332.1| two-component sensor histidine kinase [Lysinibacillus sphaericus
           C3-41]
 gi|168994662|gb|ACA42202.1| two-component sensor histidine kinase [Lysinibacillus sphaericus
           C3-41]
          Length = 566

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 64/235 (27%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +     +   +      S + H++ +P+  + + LE L      +  I    + + +  
Sbjct: 324 TEQEKIEMDRRE----FVSNVSHELRTPLTTMRSYLEALADGAWKDENIAPTFLNVTQTE 379

Query: 57  SMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWT 105
           +   I  +  +   +   +   +    +          I   +           +    +
Sbjct: 380 TERMIRLVNDLLQLSRMDSSDYELNKDIVLFNSFFNRIIDRFEMSKSDKVQFARLFPETS 439

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 + +  +++ N+   A    P GG +        +     +  +G      E   
Sbjct: 440 FYVEIDTDKVTQVIDNIISNAIKYSPDGGNIRFGFTGQGDMLKVMISDDGMGI-PKENVG 498

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           ++    +       +   +  ++  E  +     +   L 
Sbjct: 499 RIFDRFYRVDRARARSMGGTGLGLAIAREMIEAHGGKIWAESEEGQGTTIFFTLP 553


>gi|329935905|ref|ZP_08285707.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329304596|gb|EGG48472.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 541

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 21/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+++    S+ +    L   I H++ +P+  +   LE L +       E++  +   +M
Sbjct: 310 MAESLQ---SAEERQRRLTGDIAHELRTPLANLRGYLEALRDGVVDPSPELLDSLHEEAM 366

Query: 59  SAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                +  ++                 G  D L           +   V  R +V     
Sbjct: 367 LQQRIVDDLQDLALAEAGALTYHRAEVGLGDLLETARTAHAAQAEAAGVALRTRVPHPVR 426

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164
               +    +++ NL   A  + P GG V +S +      +  +   G        P  F
Sbjct: 427 VHADADRLRQVVGNLLGNALRATPPGGTVILSAERHGARAVLRVADTGTGIPAEQLPHLF 486

Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    +           +       +  ++   +  E         +  L
Sbjct: 487 DRFWRADAARGRQTGGSGLGLSIARQIVADHGGTVEVESTVGAGTTFTVTL 537


>gi|294636745|ref|ZP_06715085.1| signal transduction histidine-protein kinase AtoS [Edwardsiella
           tarda ATCC 23685]
 gi|291090046|gb|EFE22607.1| signal transduction histidine-protein kinase AtoS [Edwardsiella
           tarda ATCC 23685]
          Length = 593

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 69/228 (30%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K     L  +  L  L  L + + H++ +P+ AI   ++++ +        +       
Sbjct: 358 RKEAQRRLAQTERLATLGELMAGVAHEVRNPLTAIRGYVQIICQQTTLPAHQEYLSVVLK 417

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKID 110
            I   +      L F R        V     + +   +++   +                
Sbjct: 418 EIDSINKVIQQLLDFSRPRQSQWQRVSLNALIEEALILVQTSGVQARITFHCELDRTLPA 477

Query: 111 LSRER---AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +R    ++LLN+ + A  ++  RG     + Q +  +   +++ +G          +
Sbjct: 478 IVADRELIKQVLLNILINAVQAISARGEIRIRTQQRTPTQQTVTIEDSGCGIDIA-LQKK 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +       + + +   +            +  L 
Sbjct: 537 IFDPFFTTKASGTGLGLALSQRIINAHSGDIDVVSTPGSGSTFTLTLP 584


>gi|297568395|ref|YP_003689739.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924310|gb|ADH85120.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 785

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 70/230 (30%), Gaps = 20/230 (8%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS 57
                L +  L +L  L + I HD  + + AI  +LEL    L        +++    +S
Sbjct: 405 TEAELLKAKKLESLGVLAAGIAHDFNNILTAIMGNLELARYLLGPQHQASNLIEEGTKAS 464

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLS 112
             A    + +         +     +  I +   DF+     V   +            S
Sbjct: 465 QRAQGLTQQLLTFARGGAPIRQAASIAGIIRDSADFVLRGSEVSCRYEIPHDLKLVNVDS 524

Query: 113 RERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            + ++++ N+ + A  ++               +    +       +  +G+     E+ 
Sbjct: 525 GQISQVIQNIIINAREAISGSGTITVSCRNLGPVKKMPADEYVEIKISDSGSGI-SREEQ 583

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +      +       +  ++  ++  E         + LL 
Sbjct: 584 GKIFDPYFTTKEKGSGLGLAVCHSIIAKHHGKISVESAPGQGCTFTILLP 633


>gi|116670333|ref|YP_831266.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
 gi|116610442|gb|ABK03166.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
          Length = 587

 Score =  126 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62
           ++   ++++ L     + I H+  +P+ +I   L+L+ +   E      + L        
Sbjct: 334 DVTDLVNALALKDDFVANISHEFRTPLMSILGYLDLVLDGEEETAGQHELFLGMAQNNAE 393

Query: 63  ---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                              +   +D    +       +          V+       ++ 
Sbjct: 394 KLLNLVSGLLTVSSDSMGVHPQRMDLGDLVRKCVVSAKPRADGRWVTIVNEVSRAFWITA 453

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +     ++L NL   A      G  VT+   ++ ++  FS+   G      +        
Sbjct: 454 DPERLAQVLDNLLTNAIKYSQPGDVVTVRAWETNDQACFSVTDTGMGISEQDLPHIFTRY 513

Query: 171 NVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              S +         +    V  +   +          D     +  L +
Sbjct: 514 YRSSRVRESAMPGVGLGLGIVKRIVENHGGSATVTSKPDLGSTFTVSLPR 563


>gi|328553750|gb|AEB24242.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
          Length = 739

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           AK +   L   D   +V  L + I H+I +P+ A+   ++LL    E         +   
Sbjct: 502 AKELEERLRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLQGSIEGEHSLYFNVITSE 561

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111
                 I  +F+ LA       +       ++     +      V+ ++ ++ TG    +
Sbjct: 562 LKRIESIITEFLILAKPQAILYEEKDVTQIMKDTADLLNAQANLVNVQIHLNLTGNIPPI 621

Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             E  ++      +   ++                 K+  + SL+  G      +K  ++
Sbjct: 622 YCEPNQLKQVFINILKNAIEVMPGGGNIYVTIQPSDKDHILISLQDEGTGM-SEDKLKRL 680

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++ R+  E  +    V    L 
Sbjct: 681 GEPFYTTKDRGTGLGLMVSYKIIEEHQGRIHVESEEGKGTVFHLTLP 727


>gi|303248315|ref|ZP_07334577.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490340|gb|EFL50252.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 738

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 67/243 (27%), Gaps = 31/243 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            KN+   L  S  + A+  L   I HD  + +G I    E+++     D  +        
Sbjct: 320 RKNLEQRLRQSQKMEAIGTLAGGIAHDFNNILGIIMGFTEMIEGDAPPDSPLARRVDHIL 379

Query: 53  --IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              R +    +  L F R        +     + +  ++I   +     +  +    +  
Sbjct: 380 SACRRARDLVLQILSFSRQNEQGAKPLHVGPLVKETLKLIRATVPNSIELVDAVRPGRDT 439

Query: 111 ---LSRERAKILLNLFMVAHASLPRGG--------------KVTISVQDSKNENIFSLKI 153
                 +  +I++NL   A  ++   G                  +     +     ++ 
Sbjct: 440 VLAEPTQIQQIIMNLCGNAAQAMRDTGGVLEVGLEECPGGLCPIANDAPPADCLRLWVRD 499

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      E   +I D    +    +   +       +  +    +  E         S 
Sbjct: 500 TGPGI-PGEIQERIFDPFFTTKKPGEGTGMGLAVAHGIVRKYNGDIKVESAPGQGATFSV 558

Query: 212 LLE 214
            L 
Sbjct: 559 YLP 561


>gi|300088078|ref|YP_003758600.1| multi-sensor hybrid histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527811|gb|ADJ26279.1| multi-sensor hybrid histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 719

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 74/229 (32%), Gaps = 18/229 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA-- 60
           K      S + +V  + + I H+I +P+  I    ELL E     E ++   +       
Sbjct: 339 KAKAEMSSRLAVVGEMAAGIAHEINNPLTGIIGFSELLMEQSELPENVRENVVIISRESQ 398

Query: 61  ------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
                    L F R +     +VD    + +  ++ +  +       +      +     
Sbjct: 399 RIKDIVRRMLTFARQSAPQKSAVDIHELIDNTLELRKYVLETANIKVIRRYDMGLPWLTV 458

Query: 114 ---ERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +  ++ LN+ + A  ++       ++TIS Q + +    S K +G      E   ++
Sbjct: 459 DSGQMQQVFLNILVNAEHAMKEYHGRGEITISTQRAGDRIKLSFKDDGPGI-TDEVRPKL 517

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +   +     + +  E+   +    +D         L 
Sbjct: 518 FQPFFTTKEPGEGTGLGLSLSLGIVQEHGGEITINSVDGQGAEFVIDLP 566


>gi|148265594|ref|YP_001232300.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146399094|gb|ABQ27727.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 402

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           N    + +  + +  +L + + H+I +P+ ++    E L     ++  +           
Sbjct: 164 NELQLVQAEKMSSIGMLAAGVAHEINNPLTSVAGYAEALLRRFRDETGLVEDNRLKDFKK 223

Query: 62  IRLKFMRLAFGYTGSVD---------------------SLIGLGDIEQVIEDFIAVDKRV 100
                +R ++   G +D                         L  +     +     +  
Sbjct: 224 YLEVIIRESYRCKGIIDSLLSFSRKSEGSVGFVDLNKILNEVLELVRHKARNEKIEIQES 283

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++ +NL M A  ++   G + I+  D       ++  +G     
Sbjct: 284 MQPDLPMIKGDEAGLRQVFMNLTMNALQAIDGPGMIKIATFDQNGVVTATICDSGCGIPS 343

Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                QI D    +        +       +  ++   +  E         +  L 
Sbjct: 344 S-LMDQIWDPFFTTKDVGQGLGLGLAVTYNIIKKHGGEIHVESKHGEGSKFTVRLP 398


>gi|295696418|ref|YP_003589656.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412020|gb|ADG06512.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 590

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           ++I   L+   +     + + H++ +P+  +    E L     D+     E+ ++I   +
Sbjct: 348 RDITEQLNIERMRRDFVANVSHELRTPLSMLQGYSEALVDDFIDDPEQRRELAEIILEET 407

Query: 58  MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
           +     +  +                 VD    +  I +                +QV  
Sbjct: 408 LRMRRLVNDLLDLAQLESGRFVMKRQPVDVRPLIQKIWRKFSALAQERKLTFHLEMQVDD 467

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L NL   A       G VTI    S++    +++  G      +  
Sbjct: 468 PVIVDADVDRLEQVLTNLIDNAFRHTQPPGSVTIRFSVSQDTARIAVEDQGAGIPPEDIP 527

Query: 164 --FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +           +       +  ++   +  E         + LL 
Sbjct: 528 YIWERFYKVDKARTRNRGGTGLGLAIARNIVLQHDGDITVESRLGKGTTFTVLLP 582


>gi|270308765|ref|YP_003330823.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154657|gb|ACZ62495.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 1092

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 71/223 (31%), Gaps = 20/223 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI--- 61
           S  L A+  + + I H+I +P+  +    ELL E         + +Q+I   S  A    
Sbjct: 726 SSRLAAVGEMAAGIAHEINNPLTGVIGFSELLLERKDLPDDVKDNLQIINEGSQRAREII 785

Query: 62  -IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER---A 116
              L F R +      VD    +    ++        + +V   +      +  +     
Sbjct: 786 KRMLTFARQSTPQMNRVDITSLIDHTLELRNYVLATANIKVIKDYDANLPWVIADPGQLQ 845

Query: 117 KILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           ++ LNL + A  ++ +       TI  +   +    S+  +G      E   ++      
Sbjct: 846 QVFLNLIVNAEHAMKKAHDKGILTIQTKSLGDSIRISVTDDGPGM-PDEVLKKLFQPFFT 904

Query: 174 STI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +   +     + +  E+   +  E            L 
Sbjct: 905 TKEPGEGTGLGLSLSLGIIQEHNGTIRAESKAGKGTTFIVELP 947


>gi|167036596|ref|YP_001664174.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039248|ref|YP_001662233.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|256751654|ref|ZP_05492529.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913888|ref|ZP_07131205.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307725427|ref|YP_003905178.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|320115023|ref|YP_004185182.1| ATP-binding region ATPase domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166853488|gb|ABY91897.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|166855430|gb|ABY93838.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749463|gb|EEU62492.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890573|gb|EFK85718.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307582488|gb|ADN55887.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|319928114|gb|ADV78799.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 470

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 75/232 (32%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MAK +       ++     + + H++ SP+ +I   ++ + +         + +++++  
Sbjct: 237 MAKELE---QLENMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPKEKACDYLKIVQKE 293

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE 107
           +      +                +    D    +        +  +  D  V+V +  +
Sbjct: 294 TRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
           +  +  ++    ++L NL   A       G + I  +   ++   ++K NG      +  
Sbjct: 354 RRIVIGDKDKIEQVLTNLIDNAIKFSKEKGIIHIFTEIKDDKVFITIKDNGIGISPEDQE 413

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             + +    +     D   +  Y V  + + +   +  E         +  L
Sbjct: 414 HIWDRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESEVGKGTAFTFTL 465


>gi|157694430|ref|YP_001488892.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157683188|gb|ABV64332.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 612

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 71/220 (32%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+  + + LE L      +  +    + + +  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTTMRSYLEALAEGAIGDKELAPRFLSVTQNETERMIRLVNDLLQLSK 440

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 +    +T  +  +  + D  ++ ++      R              +  ++L N
Sbjct: 441 FDSKDYQFNREWTNFIRFISLVIDRFEMTKEQHVEFIRNLPQREIYVEIDQDKITQVLDN 500

Query: 122 LFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE---KFTQIVDGN--VES 174
           +   A    P GG +T +V   + +   +FS+K  G      +    F +    +     
Sbjct: 501 IISNAMKYSPEGGHITFTVDLDEEKSLVLFSVKDEGIGIPKKDMDKIFERFYRVDKARTR 560

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +   +   +  + I+     ++  L 
Sbjct: 561 KLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 600


>gi|222056612|ref|YP_002538974.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
 gi|221565901|gb|ACM21873.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
          Length = 392

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K     + S  L  L  L + + H+I +P+ +I   ++L+     + E ++ +     
Sbjct: 166 LQKAQAEIVQSEKLATLGYLSAGMAHEIRNPLNSISLFVQLIKSGMDDPEKLEYVDKIVK 225

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGE 107
                       L            V     + +  ++    I + K        +    
Sbjct: 226 EIDRIDGILRKLLDASNRPKFEIRDVLIHQVIDNTLEIFSPQIQLHKITVNRDYRNIPPA 285

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I  NLF+ +   +   G + + +   +      +   G      E    +
Sbjct: 286 IKADPSELEQIFTNLFLNSINEMASEGTLGVFLDYDRQYITIRVSDTGTGIPV-ENVPYV 344

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V+ +    K ++  E  D         L 
Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKNYKGKIEVEKSDATGTTFCVKLP 391


>gi|229085487|ref|ZP_04217725.1| hypothetical protein bcere0022_21000 [Bacillus cereus Rock3-44]
 gi|228697792|gb|EEL50539.1| hypothetical protein bcere0022_21000 [Bacillus cereus Rock3-44]
          Length = 588

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 345 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINQEDQNKYFDLMLSEIE 404

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------ID 110
                  +F+ +A      ++       +  V+           +               
Sbjct: 405 RIESILHEFLSIAKTDVIPIEKKNICSILRNVVSLINTKAIMTNIQINLHIESKELLIDC 464

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG ++IS++ S+ E  +  +   G      E+  ++ +
Sbjct: 465 CENQLKQVFINILQNSIEAMPNGGTISISMKKSEREEVVIHIVDEGVGI-PEERIKRLGE 523

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      I       +   ++ R+           ++  L 
Sbjct: 524 PFYSTKEKGTGIGLMLSYKIIESHQGRISIMSEVGRGTSVTIYLP 568


>gi|78042822|ref|YP_360841.1| extracellular solute-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994937|gb|ABB13836.1| extracellular solute-binding protein, family 3/sensory box
           histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 656

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--- 56
            K++   ++   L+    L +   H+I +P+  + + LELL     +    + +      
Sbjct: 420 KKSLELMINRDKLITVGQLVAGFVHEIKNPLFTVKSYLELLPLKANDPAFREEVINILKN 479

Query: 57  -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKI 109
                       L + R        V     +  +  ++E      +      +      
Sbjct: 480 ELDNVQKLINDLLNYARPQNSKKEIVVLEEVIAPLLNLLEPQFIAKQITVFKENLGFAVY 539

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +   + +NL + A  ++   G++ I   +  ++    ++  G           I +
Sbjct: 540 ADPMQLRHVFMNLLLNAIDAIQDKGEIKIKAAEYGDKIKIEVQDTGIGIPPQYLNQ-IFN 598

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               S  D + I       L  EN   +L +         +  L K
Sbjct: 599 LFFTSKKDGNGIGLAICQKLIQENGGSILVDSTPGAGTTFTIFLPK 644


>gi|323701987|ref|ZP_08113656.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533073|gb|EGB22943.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 522

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           +A+          S  L+AL  L + + H++ +PIG I   +E++ E   +   +     
Sbjct: 274 LAEKEKLEDQLRRSEHLIALGRLATGVAHELRNPIGIIKTLVEIMKEEYSQLSGIDEFTR 333

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    + R   +                  + +      L     V+       +     
Sbjct: 334 AVEEQVDRQNMVIQELLDFGRPTKVASKECSVNDLLNGVLSFSAAVLRKQKIKVRLNLQP 393

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     +  ++ +NL + A  ++P GG + I   +  N+ +      G      E+
Sbjct: 394 DLPSIFADVDKLKQVFVNLIINASEAMPNGGILEIKSYNVDNQLVVQFVDTGEGIPPEEQ 453

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +      +           +   +  +         +  L 
Sbjct: 454 S-RIFDPFYTTKPTGTGLGLSISYQNIKLHNGTIEVDSSPGQGTTFTIKLP 503


>gi|56475528|ref|YP_157117.1| fusion Na-dependent permease/histidine kinase domain-containing
           protein [Aromatoleum aromaticum EbN1]
 gi|56311571|emb|CAI06216.1| Fusion protein of probable Na-dependent permease domain and
           histidine kinase domain of putative two-component sensor
           [Aromatoleum aromaticum EbN1]
          Length = 918

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLS 56
           +     L  +D L     S + H++ +P+ +I    E+L +            + +I   
Sbjct: 671 RAANERLKELDRLKDDFMSSVSHELRTPLTSIRAFSEMLLDDPDIALPDRMRFLGIIVSE 730

Query: 57  SMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +      +  +                           +    Q+  D  A  + V    
Sbjct: 731 TERLTRLVNQVLDLAKIESGHAEWHNSDIDMRALVEQAVDTTAQLFRDRGATVELVLPDE 790

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFP-- 161
                       +++LNL   A   +P+G         S+  +    +  NG        
Sbjct: 791 APHLKADHDRLVQVMLNLLSNAAKFVPQGAGRIRVALKSEAGQVRVEVSDNGPGIPPELH 850

Query: 162 -EKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G  E        +       +      RL  E    H  V + +L 
Sbjct: 851 GVIFEKFRQGGDERSRPQGTGLGLPISRQIVEHFGGRLWVESPPGHGTVFTFVLP 905


>gi|163939241|ref|YP_001644125.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861438|gb|ABY42497.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 498

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111
               +    +    T  ++    +  I   +   I  +  +                   
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSESNLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKHAHLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 494


>gi|329957581|ref|ZP_08298056.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328522458|gb|EGF49567.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 808

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 61/228 (26%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK        +    L  + + H+I +P+ AI     LL   +     ++ M ++  ++ 
Sbjct: 581 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLVQEENPEEREQYMAIVEENNE 638

Query: 59  SAIIRL--------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                    +D  +   D+ +V++        V       +  
Sbjct: 639 LLLQLISDILDLSKMEAGTFDFVERELDVNLLCEDMVRVMKLKAKPGVEVVFDRHLPECV 698

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           ++ +R    +++ N    A      G       +       F +   G      ++    
Sbjct: 699 IASDRNRLNQVIANFINNAIKFTAIGSIRLGYDRIDAGHLRFYVADTGIGIMQEKQAEIF 758

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +    +  E            L 
Sbjct: 759 DRFVKLNSFVHGTGLGLSISKSIVEQLGGTIGVESEPGKGACFWFTLP 806


>gi|254726165|ref|ZP_05187947.1| sensor histidine kinase KinD [Bacillus anthracis str. A1055]
          Length = 498

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494


>gi|162456391|ref|YP_001618758.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161166973|emb|CAN98278.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 498

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 68/228 (29%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +++     ++S  L A+  + + + H+I +PI  I   ++ + +   + E+ + + +   
Sbjct: 258 LSRTEADLVASERLAAIGRVAAGVAHEINNPIAVIRGYVKTMAKEAEKPELREELSILDE 317

Query: 56  ----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKI 109
                   A   L + R        V +   L D     +       +  +         
Sbjct: 318 EAAACQRIAEELLMYARSPILSPRPVQAEELLMDAASHCDGGPGRRDQAPLVDAEPSFIN 377

Query: 110 DLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  ++++NL   A  +        +V +  +   +     +   G      E   +
Sbjct: 378 VDPLRIRQVIVNLVANAREATSGTSEREEVIVRGRRQDDGYRIEVLDRGAGI-PAEARER 436

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +  D   +       L   +   +  E       +    L 
Sbjct: 437 LFEPFFTTRRDGTGLGLAVCYGLVTAHGGTIRAEPRPGGGSLFVIDLP 484


>gi|47566222|ref|ZP_00237250.1| sporulation kinase D [Bacillus cereus G9241]
 gi|47556775|gb|EAL15106.1| sporulation kinase D [Bacillus cereus G9241]
          Length = 498

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111
               +    +    T  ++    +  I   +   I  +  +                   
Sbjct: 333 INKIVSEFLILGKPTAIIEQTYDVRTILNEVTLIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV ++       +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTNNATHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +      ++    I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGQIFINSIENEGTTVHIEIP 494


>gi|270294471|ref|ZP_06200673.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270275938|gb|EFA21798.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 927

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 64/229 (27%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     L+ E G  +E  Q + +   +  
Sbjct: 700 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSSLMGETGDMEEKRQYMAIIEENND 757

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                         +D  +   DI + ++        V       +  
Sbjct: 758 LLLQLISDILDLSKIEAGTFDFVEKELDVNMLCEDIVRFMKMKAKPGVEVLFDRHLPECR 817

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G       +  +    F +   G     PE   QI
Sbjct: 818 IVSDRNRLNQVIANFVNNAIKFTTAGSIRVGYNKVDETHLRFYVADTGLGI-EPEMQAQI 876

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D  +   + +    +       +  +    +  +           +L 
Sbjct: 877 FDRFIKLNTFVHGTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLP 925


>gi|229060323|ref|ZP_04197689.1| hypothetical protein bcere0026_24230 [Bacillus cereus AH603]
 gi|228718913|gb|EEL70530.1| hypothetical protein bcere0026_24230 [Bacillus cereus AH603]
          Length = 579

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 68/226 (30%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSS 57
            K       S  L A+  L + + H++ +P+  I   ++L  +++   E     ++    
Sbjct: 332 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 391

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110
               I  +F+ +A     + +        + V+           +               
Sbjct: 392 RIESILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 451

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  G        +  KN  + S+   G      E+  ++ +
Sbjct: 452 SENQLKQVFINILQNSIEAMLNGGEISIHIKEIHKNGVVISVIDEGIGI-PEERIKRLGE 510

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 511 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTIYLPK 556


>gi|160891180|ref|ZP_02072183.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|317481076|ref|ZP_07940155.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156859401|gb|EDO52832.1| hypothetical protein BACUNI_03627 [Bacteroides uniformis ATCC 8492]
 gi|316902789|gb|EFV24664.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 940

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 64/229 (27%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     L+ E G  +E  Q + +   +  
Sbjct: 713 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSSLMGETGDMEEKRQYMAIIEENND 770

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                         +D  +   DI + ++        V       +  
Sbjct: 771 LLLQLISDILDLSKIEAGTFDFVEKELDVNMLCEDIVRFMKMKAKPGVEVLFDRHLPECR 830

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G       +  +    F +   G     PE   QI
Sbjct: 831 IVSDRNRLNQVIANFVNNAIKFTTAGSIRVGYNKVDETHLRFYVADTGLGI-EPEMQAQI 889

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D  +   + +    +       +  +    +  +           +L 
Sbjct: 890 FDRFIKLNTFVHGTGLGLSISKSIIEQLGGTIGVDSEPGKGSCFWFVLP 938


>gi|317487012|ref|ZP_07945820.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316921694|gb|EFV42972.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 585

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 20/226 (8%)

Query: 8   NLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            L S       LVAL  + + I H++ +P+ AI        E   E      +       
Sbjct: 358 RLQSELRRRDRLVALGNMAAGIAHEVRNPLSAIKGLARFFMEASPEGSDESRMADIMTRE 417

Query: 61  I--------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEK 108
           +          L F R        V     +     ++   +   K              
Sbjct: 418 VLRLDKVVGDLLDFARPDVLNLTDVGLNELVERARDMVRSDMDARKIRFEAELPEPPLSV 477

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++LLNLF+ A  ++P GG++ +  +    E    +   G     PE+   I 
Sbjct: 478 RLDRDRMTQVLLNLFLNAVQAMPDGGRLMVRARMEGTELALDVADTGCGI-APERLADIF 536

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +    V  +   +   +          V      
Sbjct: 537 SPYFTTKASGTGLGLSIVHKIVEAHDGTIEVASTPGEGTVFKLRFP 582


>gi|315604747|ref|ZP_07879810.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313759|gb|EFU61813.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 480

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSR-----ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI 53
           +A  +   L  ++  A++  R     + H++ +PI  +   +ELLD  +     +   L+
Sbjct: 241 LAAAVNRMLDRVE-RAVVARRELLDDVSHELRTPITVVRGHMELLDPSDHADVVDTRALV 299

Query: 54  RLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                   I +K +              VD       +          D  +  S     
Sbjct: 300 IDELDRMGILVKDLLELARASDAVAPTPVDLAALTDAVVDKASALGDRDWVLDASAHASC 359

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
              S    +  L L   A     +G +V I  +   +     ++  G      +      
Sbjct: 360 SLDSARMTQAWLQLAQNAVQYSAKGTEVGIGSRVEGDVARMWVRDRGEGIAPQDIERVRG 419

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + V G     +    +    V  +A  +  RL  E         + ++ 
Sbjct: 420 RFVRGVGAERVSGSGLGLSIVESIARAHGGRLDIESTLGEGSTFTLVIP 468


>gi|289433253|ref|YP_003463126.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT]
 gi|288946973|gb|ADC74670.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT]
          Length = 1092

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---- 53
           +       +     L A+  + + I H+I +P+  +    ELL E     + ++      
Sbjct: 715 QQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSELLLEREDLPDDIKANLKII 774

Query: 54  ----RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK 108
               + +       L F R        V+    +    ++        + ++   +    
Sbjct: 775 NDGSQRAKEIIKRMLTFARQTTPQMSRVNITELINHTLELRNYVLATANIKIVKDYDATL 834

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
             +  +     ++ LNL + A  ++ +       TI  +        S+K +G       
Sbjct: 835 PWVVADPGQLQQVFLNLIVNAEYAMKKAHDKGILTIKTEKLDGYVRISVKDDGPGMPEG- 893

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++      +    +   +     + +  E+   +  E  +         L 
Sbjct: 894 IRKKLFQPFFTTKEPGEGTGLGLSLSLGIIQEHTGTIRAESEEGKGTTFIIELP 947


>gi|86157319|ref|YP_464104.1| osmosensitive K+ channel signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773830|gb|ABC80667.1| osmosensitive K+ channel signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 902

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 64/231 (27%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
           A+       + +L + L S + HD+ +P+ AI  +  LL      +  +  E++  +   
Sbjct: 654 ARRSALRARTEELRSGLLSAVSHDLRTPLAAITGASTLLLDAAVADPAVRRELVATVVEE 713

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SWTG 106
           +      +  +         V            +           +              
Sbjct: 714 AERLERLVSDLLDMTRLDSGVVEPRREWVPLVEVVGAAMNRVERALGNRPVAIALRDDLP 773

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L+NL   A    P G +++++        +  +   G      E+  +
Sbjct: 774 LLSIDPILIEQLLVNLLENATKYTPPGTEISVAAVREGGTLVIEVADRGPGIPAGEE-ER 832

Query: 167 IVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +    +    +       +A  +  RL          V    L 
Sbjct: 833 IFERFHRAARPGVRGVGLGLPIARAIAQAHGGRLTAASRPGGGSVFRLTLP 883


>gi|49480080|ref|YP_035560.1| sensor histidine kinase; sporulation kinase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49331636|gb|AAT62282.1| sensor histidine kinase; possible sporulation kinase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 498

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRSILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETRAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494


>gi|73749292|ref|YP_308531.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73661008|emb|CAI83615.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
           CBDB1]
          Length = 1092

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---- 53
           +       +     L A+  + + I H+I +P+  +    ELL E     + ++      
Sbjct: 715 QQQQLRNKAEMSSRLAAVGEMAAGIAHEINNPLTGVIGFSELLLEREDLPDDIKANLKII 774

Query: 54  ----RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK 108
               + +       L F R        V+    +    ++        + ++   +    
Sbjct: 775 NDGSQRAKEIIKRMLTFARQTTPQMSRVNITELINHTLELRNYVLATANIKIVKDYDATL 834

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
             +  +     ++ LNL + A  ++ +       TI  +        S+K +G       
Sbjct: 835 PWVVADPGQLQQVFLNLIVNAEYAMKKAHDKGILTIKTEKLDGYVRISVKDDGPGMPEG- 893

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++      +    +   +     + +  E+   +  E  +         L 
Sbjct: 894 IRKKLFQPFFTTKEPGEGTGLGLSLSLGIIQEHTGTIRAESEEGKGTTFIIELP 947


>gi|320353304|ref|YP_004194643.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121806|gb|ADW17352.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 570

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 74/231 (32%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + +     L +  L A+  L + I H+  +P+  I + L+ L +       +  +++   
Sbjct: 334 LQETQRQYLHAEKLSAIGKLSASIAHEFNNPLQGILSILKGLKKRAILEEEDRVLLEAAI 393

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDL 111
             S      ++ ++     +    +++ +        ++       KR+++     +   
Sbjct: 394 AESDRIKELIRQLQDFNRPSSDRKAVVDVHQSLNSVLLLHTSDFKGKRIELRLDYAERLP 453

Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFT 165
                  +  ++ LNL   A  +    G V         +    +++ NG     PE   
Sbjct: 454 HILAVPDQIKQVFLNLLANAADACRPSGGVITVTTRLVDDRVAVTVEDNGIGI-VPEDMD 512

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I      +  +     +       +  +++  +  E         + LL 
Sbjct: 513 LIFQPFYTTKPEVKGTGLGLSVSYGIVKDHQGEIRVESRPGEGARFTVLLP 563


>gi|266620607|ref|ZP_06113542.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288867785|gb|EFD00084.1| putative sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 365

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 55/215 (25%), Gaps = 17/215 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA------- 70
             + + H++ +P+ AI N  +LL    +  +  +       S       +          
Sbjct: 139 FAANVSHELKTPLAAIQNYAQLLGTTELTPKQQEYTERILSSTQRLTSLIYNILKLNKLE 198

Query: 71  FGYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                       L               +   ++    +               +  NL 
Sbjct: 199 SQKIHPKPEPYDLCRQLSDCAIGFEAIWEQKKINFEADMEDRAVIEADEELMELVWNNLL 258

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHD 180
             A      GG V++     +   +  +   G           F +   G+   + + + 
Sbjct: 259 SNAFKFTKSGGTVSLRQFSDEERIVTEVGDTGCGMTPEMMKHMFDKFYQGDTSHSTEGNG 318

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V+ +   +   +     +    V +  L +
Sbjct: 319 LGLALVLRVLEMSGGTITVNSTEGKGTVFTVSLPR 353


>gi|148264739|ref|YP_001231445.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146398239|gb|ABQ26872.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 438

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 63/224 (28%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
                    L  +  + +R+ H++ +P+  I  + ++L         + E+M  +   + 
Sbjct: 211 RNEMRKKERLATMGEVVARVAHEMRNPLFGITAAAQILAMELKLTAPQKELMNSLFTEAR 270

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKID 110
                ++ +           +   L         F  V         ++         + 
Sbjct: 271 RMNHLVEELLDCSKEMILKKTPFDLVKALNESLSFNEVFIIEKKLNLQKRLPDGELTVVA 330

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++++N+   A  +   GG + + +  +  +    +  +G      +   +I D 
Sbjct: 331 DPERVRQVMVNILKNAVDATATGGTIAVGLVKTGGDVSIHVTDSGPGI-ADDAIEKIFDV 389

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +A  +   L            +  L 
Sbjct: 390 FYTTKKHGTGLGLSISRKIADAHDGALTASNNAGGGATFTFTLP 433


>gi|153004717|ref|YP_001379042.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028290|gb|ABS26058.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 600

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + +     L +  L A+  L +   H+I +P+  I  + +LL E       + E ++ I 
Sbjct: 360 LREAQAQLLEAQKLAAIGQLGAGAAHEINNPLTGILGNAQLLLEAMPRSNPDRESVEKIE 419

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWT 105
             +       + +          D      +        +                   +
Sbjct: 420 ALARRCRDITQKLIRFSQQRAEPDFRELDANRVVAEALALVDGHLRAGGIPLDVSLAEPS 479

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163
                     A+++LNL   A  +        + I+ + +  +    +   G     PE 
Sbjct: 480 PRVKGDPGHLAQVVLNLLSNARTACAGRPGAGIRIATRRAGGDVEIVVSDGGKGI-APEH 538

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +     +  +       +  E+  R+  E         +  L 
Sbjct: 539 LPRIFEPFFTTKDQWSNVGLGLSVSYRIVAEHGGRIDVESRAGEGSTFTVRLP 591


>gi|229043175|ref|ZP_04190899.1| hypothetical protein bcere0027_12290 [Bacillus cereus AH676]
 gi|228726182|gb|EEL77415.1| hypothetical protein bcere0027_12290 [Bacillus cereus AH676]
          Length = 508

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 283 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 342

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 343 INEIVSEFLILGKPTAIIEQTYDVRKILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 402

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++     +TI V++++      +   G           +    
Sbjct: 403 KDHMKQVVLNITKNAIEAMTSSDTLTIVVKNNETHAQLQIIDTGKGI-PQHIQKHLFHPF 461

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 462 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSTENEGTAVHIEIP 504


>gi|134045508|ref|YP_001096994.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
 gi|132663133|gb|ABO34779.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C5]
          Length = 614

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 23/224 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66
           +L + L S + H++ +P+ +I   ++LL +         + E + +I  +S      +  
Sbjct: 389 NLKSELLSIVSHELRTPLTSIRGYVDLLKDETAGKLNDKQHEFILIISENSDRLKRLIDN 448

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------WTGEKIDLSRERA 116
           M         V          +     I    +                        +  
Sbjct: 449 MLDLVKVENEVLDFKFNKLNIKNTVGEIISSLKYFADSKNIILLEDVDEVYIKGDKSKIN 508

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--- 173
           ++L NL   A        KVT+   + K      +   G      E   +I +   +   
Sbjct: 509 QVLANLIENAIKFSKNQTKVTVIGFEDKENLHLEITDQGPGI-PKENLEKIFEKFYQIDS 567

Query: 174 ---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I    +       +   +   +  E        +  LL 
Sbjct: 568 SSKREIGGSGLGLAVCKKIVESHGGSIWVESKVGKGTSVHILLP 611


>gi|297545524|ref|YP_003677826.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843299|gb|ADH61815.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 470

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 75/233 (32%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MAK +       D+     + + H++ SP+ +I   ++ + +         + +++++  
Sbjct: 237 MAKELE---QLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPVEKACDYLKIVQKE 293

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE 107
           +      +                +    D    +        +  +  D  V+V +  +
Sbjct: 294 TRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
           +  +  ++    ++L NL   A       G + I  +   ++   ++K NG      +  
Sbjct: 354 RRIVIADKDKIEQVLSNLIDNAIKFSKEKGIIHIFTETKDDKVFITIKDNGIGISPEDQE 413

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +     D   +  Y V  + + +   +  E         +  L 
Sbjct: 414 HIWDRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESKIGRGAAFTFTLP 466


>gi|289579383|ref|YP_003478010.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289529096|gb|ADD03448.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 470

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 75/233 (32%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MAK +       D+     + + H++ SP+ +I   ++ + +         + +++++  
Sbjct: 237 MAKELE---QLEDMRKDFVANVSHELRSPLTSIQGYIDGILDGTIPVEKACDYLKIVQKE 293

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE 107
           +      +                +    D    +        +  +  D  V+V +  +
Sbjct: 294 TRRMSRLIDDFLEMTKLESGQFPLHKTEFDINELIRLAVIKFEKRIVEKDLTVKVDFEED 353

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
           +  +  ++    ++L NL   A       G + I  +   ++   ++K NG      +  
Sbjct: 354 RRIVIADKDKIEQVLSNLIDNAIKFSKEKGIIHIFTETKDDKVFITIKDNGIGISPEDQE 413

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +     D   +  Y V  + + +   +  E         +  L 
Sbjct: 414 HIWDRFYKADKSRGKDGAGLGLYIVKRIINAHNEEIWVESKIGRGAAFTFTLP 466


>gi|311032452|ref|ZP_07710542.1| sporulation kinase B [Bacillus sp. m3-13]
          Length = 419

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 13/226 (5%)

Query: 1   MAKNICF-NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----------IEDE 48
           M           + +V+ L + + H++ +P+ +    L+L+ +             I  E
Sbjct: 188 MQLQHELQRSEKLKVVSELAASVAHEVRNPMTSTRGFLQLMSQDDNLNGSQKRYIDISIE 247

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +   +      +   K  +           L  +  +          + R ++      
Sbjct: 248 ELDRAQSIIQDYLSLAKPNKQGMDKINVSKELEHVIQLMSTYTALNNTNIRQEIEGELYI 307

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                E  ++L+NL      ++ + G VT+     K   +  ++ NG      +   ++ 
Sbjct: 308 KANKDEMKQVLINLIKNGIEAIDKDGTVTVKAFSFKGMVLIEIRDNGVGMTPQQV-ERLG 366

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      I       +    + ++          + +  L 
Sbjct: 367 TPFYSTKDKGTGIGLTISFQIIELLQGKIEVTSEVGKGSIFTIKLP 412


>gi|295425530|ref|ZP_06818221.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664]
 gi|295064783|gb|EFG55700.1| sensor histidine kinase VicK [Lactobacillus amylolyticus DSM 11664]
          Length = 618

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++   +E L      +  I  + +Q+ +  +   I  +  +    
Sbjct: 379 QFVSNVSHELRTPLTSLRAYIEALNEGAWKDPTIAPQFLQVTQEETERMIRMINDLLSLS 438

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112
                V  +             I     + V                            +
Sbjct: 439 RMDRGVSKMDLEWVNLNDFVSHILNRFDMIVKTDKNTDKKKKYTIRRELGNQALWVEIDT 498

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
            +  +++ N+   A    P GG +T+ +  ++N  I S+   G      +    F +   
Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLVQNQNHVILSISDQGLGIPRKDLGKIFDRFYR 558

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +   +  ++  +  + +       L 
Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGKIWADSSEGNGSTFYISLP 605


>gi|162450707|ref|YP_001613074.1| putative sensor kinase [Sorangium cellulosum 'So ce 56']
 gi|161161289|emb|CAN92594.1| putative sensor kinase [Sorangium cellulosum 'So ce 56']
          Length = 341

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 68/236 (28%), Gaps = 27/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + +    +    +L A   S++ H++ +P+ +I    E L     +   ED  ++ +   
Sbjct: 72  LRRERNLS----ELQADFVSKVSHELRTPLTSIRMFTETLTLRRGDTISEDRCIEALTKE 127

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGE 107
           S      +  +                                         + VS    
Sbjct: 128 SARLQQLIDRLLDWGRMESGRRVYELSEHHLGEIADEAIHAFEPTREKRSVDLDVSIDAN 187

Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +R+ ++  +      A+    +  K+++S        + +++ NG      E  
Sbjct: 188 LPPVLCDRSALVDAIVNLLSNAYKYGGQPRKISVSAHVLNRSAMLTVRDNGKGIARAE-H 246

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +             +   +    V  +   +  ++L +         + +L 
Sbjct: 247 KRIFEKFYRVDDLLARQQEGSGLGLSIVKHVIRAHGGKILVDSEPGKGSTFTLVLP 302


>gi|110598804|ref|ZP_01387063.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like
           [Chlorobium ferrooxidans DSM 13031]
 gi|110339594|gb|EAT58110.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like
           [Chlorobium ferrooxidans DSM 13031]
          Length = 679

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
            +++   +     L A+  L S + H+I +P+ AI    + LD      E  +       
Sbjct: 449 QRSMQRVIERQEKLTAMGELASGVAHEIRNPLNAIGVLGQRLDMEFSPAEEREEYHHLVR 508

Query: 56  ----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSW 104
                       ++           +     L D  +            + V   +    
Sbjct: 509 AIVSEVHRVNAIIQRFLKFARPPKLMLMPTDLDDFIRQYRPVLEGEAETVGVRFTLTAFS 568

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +      +  ++LLNL   A  +   GG+VT+            +   G      E  
Sbjct: 569 GCQISIDRAQMQQVLLNLVRNAVEATEPGGEVTVMTGQRTGSAFIEVADTGRGI-PEELR 627

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +QI +    S  D   +       +   +   +  E +++   +   +L +
Sbjct: 628 SQIFNLYFTSKEDGTGMGLSIANQIVQSHGGVIEVESLENRGSIFRIVLPR 678


>gi|88801182|ref|ZP_01116725.1| GGDEF family protein [Reinekea sp. MED297]
 gi|88776085|gb|EAR07317.1| GGDEF family protein [Reinekea sp. MED297]
          Length = 773

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 57/217 (26%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-----------------SAII 62
           + + H++ +P+ AI  S++LL     ++ + + I +                        
Sbjct: 409 ANVSHELRTPLNAIQGSVDLLSHSSQDESLKEPIDMIQHSSSFLLFLINDILDLAKLNAD 468

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
            L      F   GS+  +  +             +  +        +   +   +++ NL
Sbjct: 469 MLTIDEQPFNLHGSIQQICSIYSNSLANNAQTRFELTISPDVPTWIVGDEKRLEQVIANL 528

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTID 177
              A     +G           +  + S++  G   +              D ++     
Sbjct: 529 LSNAFKFTEKGKVTCRLTLKDTHTLMISVQDTGIGIKPDNLDAMFAAFTQADSSISRKYG 588

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +  +    +  E         +  L 
Sbjct: 589 GTGLGLRISSKIIEQMGGEIWAESETGQGSTFTFTLP 625


>gi|268318298|ref|YP_003292017.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335832|gb|ACY49629.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 785

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 57/224 (25%), Gaps = 25/224 (11%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            A L   + H+I +P+ +I    ELLDE       E ++        +  RL  +     
Sbjct: 555 AAFLA-NMSHEIRTPLNSILGFAELLDEQLAASGQESLREFTGIIQRSGRRLLRLINDIL 613

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDK---------------RVQVSWTGEKIDLSRERAK 117
               +++   +   E      I  +                 V        +       +
Sbjct: 614 ELSRLEADRLVLRTEPCALHTIVKEAVAELEPLACQKGLTLTVHTEAVPPVLGDPHRLHQ 673

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEKFTQIVD----G 170
           I+ NL   A     +G       + ++    + +  +   G                   
Sbjct: 674 IVTNLVGNALKYTEQGEVRVEVQETTEDGVRQVVLRVTDTGPGIDPDFLPHLFEPFQRAP 733

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +   +       L  +   R+  E    +    +    
Sbjct: 734 SENDRSEGSGLGLAITKRLVEQMNGRITVESAPGNGTTFTVTFP 777


>gi|119944999|ref|YP_942679.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863603|gb|ABM03080.1| PAS/PAC sensor signal transduction histidine kinase [Psychromonas
           ingrahamii 37]
          Length = 506

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 19/231 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG---------IEDEV 49
            + +   L  S  L AL  +   I H+I +P+    ++ + L E G          E   
Sbjct: 275 QRKLEVELRQSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFLMEEGLPLEFRTECAEKIQ 334

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           + L + S +   +       +      VD    L +   +I +   V K   V     K 
Sbjct: 335 VSLEKASCIIENLLRFSRPSSEQNMVPVDLDTVLCETIMLIANQAKVYKIEIVYQPIGKC 394

Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                +     ++ +N F+ A  ++P GGK++I ++   +E    ++  G          
Sbjct: 395 GSVSGIFTLLQQVFMNFFLNAINAMPHGGKLSIILEQQNDEARICIRDTGTGILEGAL-D 453

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I D    S+       +       +  +++  +  + +       + LL 
Sbjct: 454 NIFDPFHTSSPAGKGVGLGLSLCYSIVKQHRGSISVDSMLGKGSTFTVLLP 504


>gi|146297038|ref|YP_001180809.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410614|gb|ABP67618.1| PAS/PAC sensor signal transduction histidine kinase
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 565

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 69/224 (30%), Gaps = 23/224 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L +  IED+      + +I +     +  +  
Sbjct: 343 EKIRSDFVANVSHELKTPLTSIKGFVETLKDGAIEDKEIAGKFLNIIEVEVERLVRLIND 402

Query: 67  MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     + L    ++ +   +   +  ++++    +        
Sbjct: 403 LLYLSEIENAKIQVTEDDVNVKEVLEECIELLRFKAESKNIKMQLRLDDKLKMKIHKDWL 462

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I +NL   A       G+V I V+    +    +K  G      E   +I +      
Sbjct: 463 KQIFINLIDNAIVYNRENGEVIIEVERLDEKIAIRVKDTGIGIPQNEI-ERIFERFYRVD 521

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +    +    V  +      ++  +         + ++
Sbjct: 522 KGRSRKLGGTGLGLSIVKHIVELYNGKIYVQSEVGKGSEFTIVI 565


>gi|299148913|ref|ZP_07041975.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513674|gb|EFI37561.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 657

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +  + ++  + + H+I +P+ AI    E++   +    + E +++I+ +S   +  +  
Sbjct: 299 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTESEEEKMEYLEIIQRNSNLLLQLIND 358

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                        + F        +  +  + Q+        K ++              
Sbjct: 359 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 418

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            ++L N    A  +  +G        +  +     +   G      +             
Sbjct: 419 MQVLFNFLSNAIKNTEKGSITLGLKHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKLND 477

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +      R+            +  L 
Sbjct: 478 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLP 517


>gi|295087116|emb|CBK68639.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 637

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +  + ++  + + H+I +P+ AI    E++   +    + E +++I+ +S   +  +  
Sbjct: 279 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTESEEEKMEYLEIIQRNSNLLLQLIND 338

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                        + F        +  +  + Q+        K ++              
Sbjct: 339 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 398

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            ++L N    A  +  +G        +  +     +   G      +             
Sbjct: 399 MQVLFNFLSNAIKNTEKGSITLGLKHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKLND 457

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +      R+            +  L 
Sbjct: 458 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLP 497


>gi|293370768|ref|ZP_06617314.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292634128|gb|EFF52671.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 635

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +  + ++  + + H+I +P+ AI    E++   +    + E +++I+ +S   +  +  
Sbjct: 277 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTESEEEKMEYLEIIQRNSNLLLQLIND 336

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                        + F        +  +  + Q+        K ++              
Sbjct: 337 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 396

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            ++L N    A  +  +G        +  +     +   G      +             
Sbjct: 397 MQVLFNFLSNAIKNTEKGSITLGLKHE-GSWLKLYVSDTGCGISKEKLPQIFTRFEKLND 455

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +      R+            +  L 
Sbjct: 456 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSTFALYLP 495


>gi|229022894|ref|ZP_04179414.1| hypothetical protein bcere0029_12400 [Bacillus cereus AH1272]
 gi|228738429|gb|EEL88905.1| hypothetical protein bcere0029_12400 [Bacillus cereus AH1272]
          Length = 465

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 60/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 299

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V            +  
Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDQPVHILCS 359

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 360 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKYAQLQIIDTGKGIPKY-IQKHLFHPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 461


>gi|161506706|ref|YP_001576656.1| putative histidine kinase [Lactobacillus helveticus DPC 4571]
 gi|160347695|gb|ABX26369.1| putative histidine kinase [Lactobacillus helveticus DPC 4571]
          Length = 618

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++   +E L      +  I  + +++ +  +   I  +  +    
Sbjct: 379 QFVSNVSHELRTPLTSLQAYIEALNEGAWKDPEIAPKFLEVTQQETSRMIRMINDLLSLS 438

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------------------EKIDLS 112
                V  +             I     + V                            +
Sbjct: 439 RMDRGVSKMDLEFVNFNDFVSHILNRFDMIVKTDKNKGHKKKYTIKRELGNQALWVEIDT 498

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
            +  +++ N+   A    P GG +T+ +  S+   I S+   G      +    F +   
Sbjct: 499 DKMMQVIDNIMNNAIKYSPDGGVITVRLTHSQGHVILSISDQGLGIPRKDLGKIFDRFYR 558

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +   +  R+  +  +         L 
Sbjct: 559 VDKARSRAQGGTGLGLAIAKEIVEAHHGRVWADSSEGKGSTFYISLP 605


>gi|156742122|ref|YP_001432251.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156233450|gb|ABU58233.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 819

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS- 57
            +     + S  L A+  L + + H++ +P+ +I    +L L +  +   + + ++  + 
Sbjct: 419 RRLEEQLIRSEKLSAIGQLVAGVAHEVNNPLTSISGYTQLMLRDTSLSPGIREDLQHINT 478

Query: 58  ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                       L F R        VD    L     +    + VD    V+     +  
Sbjct: 479 QAERAARIVQNLLMFAREHKPQRTLVDINQVLQSTLTLRAYQLRVDNITIVTDFAPNLPQ 538

Query: 112 ----SRERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNENIFSLKING 155
                 +  ++ LNL   AH ++                         +     ++   G
Sbjct: 539 TVADPHQLQQVFLNLINNAHQAMTERGGKGTLTLRTSVEPCVGEGNREERCIRIAVSDTG 598

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I D    +        +       +  E+  RL  E        +   L
Sbjct: 599 VGISPRNLS-RIFDPFFTTKPVGQGTGLGLSICFGIIQEHHGRLWAESEVGVGTTMYVEL 657

Query: 214 E 214
            
Sbjct: 658 P 658


>gi|301052974|ref|YP_003791185.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375143|gb|ADK04047.1| sensor histidine kinase; possible sporulation kinase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 498

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHVEIP 494


>gi|283853389|ref|ZP_06370635.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571202|gb|EFC19216.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 504

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 68/233 (29%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + ++    + S  L     L + + H I +P+ ++   L  L+    ++    +   + +
Sbjct: 263 LEQSRGHLMQSEKLAMAGRLAAGVAHTIRNPLTSVKMRLFSLERGLKLDPSQQEDFEVIA 322

Query: 58  MSAIIRLKFMRLAFGYTGSVDS--------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                    +R    +               +    +  +     + +  V V  +    
Sbjct: 323 EEIGHIDTIVRNFLEFARPPKLTAQPVGLSDVVDTALVLLKHRLESYNVEVTVDRSRPLP 382

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFP 161
           ++S +  ++   L      A  ++  GG + I  +        +     +  +G      
Sbjct: 383 EISADPDQLKEALVNLVLNACEAMVEGGSIRIREEVGLLEPYGHVLAVRVTDSGPGVPPG 442

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I      +  +   +    V  +  E+   +  +  +      + +  
Sbjct: 443 -LVERIFQPFFTTKGEGSGLGLPIVKRIVEEHGGWITVQSPEGRGATFTMVFP 494


>gi|220917160|ref|YP_002492464.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955014|gb|ACL65398.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 747

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 17/230 (7%), Positives = 58/230 (25%), Gaps = 26/230 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
               L AL  + + + H+I +P+ AI  +++ LD   + ++  +   +           +
Sbjct: 474 ERDRLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVNRLNGVV 533

Query: 68  RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                Y+  +            L    ++++  +    R+++        +  +  ++  
Sbjct: 534 TQFLDYSRPLKPSLAPTQVNEVLEKTFKLLQAEVPESVRLELELAEWLPRVQADAEQLKQ 593

Query: 121 NLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164
               +A  +     +                         +      +  G      +  
Sbjct: 594 VFLNLALNAFQAMPRGGRLTVSTKLARDELAFWREGARRADVVEIRFRDTGPGI-PDDAR 652

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I      +      +       +    +  ++              L 
Sbjct: 653 ESIFVPFYTTKEKGTGLGLAICQRIVKAQQGTIVVRSAPGEGAEFLIALP 702


>gi|262276178|ref|ZP_06053987.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262219986|gb|EEY71302.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 684

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 67/235 (28%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     L +  L AL  L + I H+I +P   I  ++EL++                V
Sbjct: 434 LEQTRNKLLLNEKLAALGELTAGIAHEINNPTAVILGNIELMEYELGDNAKLVSEEIAMV 493

Query: 50  MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           ++ I          L++ R         +      +     + +       ++   +++ 
Sbjct: 494 LEQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIEESVTLVRSGTKKSDIEVVTELNA 553

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLA 158
                    +  ++L+NL M    ++          +  +           S++  G   
Sbjct: 554 KCCVEINRHQLLQVLVNLQMNGIHAMNEKGRLVVRSEDWLDENGHPMGATISVQDFGCGI 613

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E  T+I D    +      +       +       +  E         +  L
Sbjct: 614 -ANENLTKIFDPFFTTRRSGTGLGLAVTHGIVSGLGGEIKVESELGKGSTFTLYL 667


>gi|229155001|ref|ZP_04283115.1| hypothetical protein bcere0010_11950 [Bacillus cereus ATCC 4342]
 gi|228628559|gb|EEK85272.1| hypothetical protein bcere0010_11950 [Bacillus cereus ATCC 4342]
          Length = 465

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 60/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 299

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 359

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV ++       +   G           +    
Sbjct: 360 KDHMKQVVLNITKNAIEAMTSGDTLTISVTNNATHAQLQIIDTGKGI-PKHIQKHLFHPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +      ++    I++    +   + 
Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGQIFINSIENEGTTVHIEIP 461


>gi|171915807|ref|ZP_02931277.1| sensor protein ZraS [Verrucomicrobium spinosum DSM 4136]
          Length = 399

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53
            K     + S  + AL  L + + H++ +P+ ++   L+LLD             + +++
Sbjct: 137 RKLTEEKIESERISALTMLAAGVAHELGNPLNSLTIHLQLLDRRLRKLKAAEAGRLREMV 196

Query: 54  RLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
            ++          +                V     + +    +  +       V++  T
Sbjct: 197 EVAQGEIKRLDFIIGQFLAAIRPTHPQLQRVQLNELIEEAVKFLAPELKQHKVEVRLDLT 256

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                +  +  ++    +     +  ++  GG++TI    +  E   +    G      E
Sbjct: 257 RSLPLMPLDANQMKQAFYNLIRNSMQAMGEGGRLTIISTFTDFEVRLTFADTGKGI-SGE 315

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +      +    V  +  E+   +  E  +     ++  L +
Sbjct: 316 NLSNLFQPFFTTRKTGTGLGLLIVRRIIREHGGEIELESREGEGTKVNIYLPR 368


>gi|281412573|ref|YP_003346652.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
 gi|281373676|gb|ADA67238.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
          Length = 412

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 72/228 (31%), Gaps = 26/228 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM 67
           ++     + + H++ +P+ +IH   E L E  +E+       +++I   S      +  +
Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTRLINDL 243

Query: 68  --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAK 117
                            VD    +  + ++I+     +    +                +
Sbjct: 244 LDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVKGNKERLIQ 303

Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +LLNL   A            KV +   D+ +  +  ++  G      E  ++I +    
Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGI-PKESQSRIFEKFYR 362

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    +    V  +  ++  ++  E   +   V+   L K
Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPK 410


>gi|258515763|ref|YP_003191985.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779468|gb|ACV63362.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 627

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 73/224 (32%), Gaps = 12/224 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+     LS ++L+  + + I H+I +P+  +   L++L     ++   +   L     
Sbjct: 404 LAEKEMARLSQLNLIGEMAAGIAHEIRNPMTTVRGFLQMLGGKNGQERYQEYFNLMIEEL 463

Query: 61  II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         K   L    +     +  +  + Q        +  +++    + + 
Sbjct: 464 DRANSIISEYLSLAKNKALELKISNLKPVIETVFPLIQADAMMNDKNIYMELQDVPDLLM 523

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +E  ++LLN+      ++     +TI +    NE + ++   G     PE   +I   
Sbjct: 524 DEKEIRQLLLNIVHNGLQAMTARKILTIRLCRDGNEVVLAVHDEGKGI-NPEILDKIGTP 582

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +A  +  ++  E             +
Sbjct: 583 FFTTKDTGTGLGLATCYSIATRHNAKINIETNS-EGTTFFVRFK 625


>gi|328952178|ref|YP_004369512.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452502|gb|AEB08331.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 465

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 70/228 (30%), Gaps = 18/228 (7%)

Query: 1   MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
           M + +     S  L A+    S I H+I +P+  I    + LL    ++ + +Q + + +
Sbjct: 231 MEERLR---QSERLAAVGNTISHIVHEIKNPLMIIGGFAQQLLKAGTLDTKGLQKLAIIA 287

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKI 109
                    M     Y+         G+I  ++++ I          +  + +       
Sbjct: 288 EEVSRLETLMAEMKDYSRPPALKRQSGEIAGLLQEVIQLYSENLKEKNITLTLEPPDPMP 347

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             S +  ++   L      A  ++P GG++TI+          ++   G      +    
Sbjct: 348 LCSLDYQQLKQVLMNLIKNASEAMPSGGRITITAHRRPPYFEIAVADTGEGM-TSDVVEH 406

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       +   +   L          V +  L 
Sbjct: 407 IFTPYYTTKTKGSGLGLAISRNIVQAHNGNLEVVSQPGKGSVFTIKLP 454


>gi|303245735|ref|ZP_07332018.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492998|gb|EFL52863.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 685

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 63/247 (25%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIR 54
           + +     + S  + +L  L   + H+I +P+G I    +LL +           +Q I 
Sbjct: 422 LKQFQEQLIQSQKMESLGKLAGGVAHEINTPLGVILGYAQLLQDDVPTDSQIHADLQTIE 481

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
             +      +  +        S    +   +        V   F      +         
Sbjct: 482 KQAKVCRKIVADLLGFSRQAESAKIEMCFNNSLMEAITLVRHAFSLEHAAIVTDLDDRMP 541

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEK 163
            +  +     ++ +NL   A  ++   G        +  +  +        G     PE 
Sbjct: 542 IIYGDPEKLKQVWINLLSNARDAMGWQGGTLLVRSRLFVADQKVTAWFADTGPGI-PPEN 600

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI--------------IDDHNV 207
            ++I D    +        +       +  ++   +  +                     
Sbjct: 601 CSRIFDPFFTTKPVGQGTGLGLSVSFGIIQDHGGSISVQSPVPQGFFDNVDTGGAPGPGA 660

Query: 208 VLSALLE 214
           V    L 
Sbjct: 661 VFIVDLP 667


>gi|194016316|ref|ZP_03054930.1| sensor protein YycG [Bacillus pumilus ATCC 7061]
 gi|194011789|gb|EDW21357.1| sensor protein YycG [Bacillus pumilus ATCC 7061]
          Length = 612

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 70/220 (31%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+  + + LE L      +  +    + + +  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTTMRSYLEALAEGAIGDKELAPRFLSVTQNETERMIRLVNDLLQLSK 440

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 +    +T  +  +  + D  ++ ++      R              +  ++L N
Sbjct: 441 FDSKDYQFNREWTNFIKFISLVIDRFEMTKEQHVDFIRNLPQREIYVEIDQDKITQVLDN 500

Query: 122 LFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE---KFTQIVDGN--VES 174
           +   A    P GG +T +V   +     +FS+K  G      +    F +    +     
Sbjct: 501 IISNAMKYSPEGGHITFTVDLDEENGLVLFSVKDEGIGIPKKDMDKIFERFYRVDKARTR 560

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +   +   +  + I+     ++  L 
Sbjct: 561 KLGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTVTFTLP 600


>gi|321312444|ref|YP_004204731.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018718|gb|ADV93704.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 579

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M +          +     + + H++ +PI +I    E L     ++     E + +I  
Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396

Query: 56  SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S      ++ +                    + +       +          + ++   
Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPK 456

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   +S +     ++ LNL   A    P GG V I+V+  + +    +  +G   +  E 
Sbjct: 457 DPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEI 516

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +                 +    V  L   ++ ++          V +  L++
Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTLKR 573


>gi|16079962|ref|NP_390788.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310851|ref|ZP_03592698.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315177|ref|ZP_03596982.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320094|ref|ZP_03601388.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324376|ref|ZP_03605670.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|130130|sp|P23545|PHOR_BACSU RecName: Full=Alkaline phosphatase synthesis sensor protein phoR
 gi|143331|gb|AAA22663.1| alkaline phosphatase regulatory protein [Bacillus subtilis]
 gi|2293271|gb|AAC00349.1| signal transduction protein kinase [Bacillus subtilis]
 gi|2635375|emb|CAB14870.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 579

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M +          +     + + H++ +PI +I    E L     ++     E + +I  
Sbjct: 341 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGAMEDKEALSEFLSIILK 396

Query: 56  SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S      ++ +                    + +       +          + ++   
Sbjct: 397 ESERLQSLVQDLLDLSKIEQQNFTLSIETFEPAKMLGEIETLLKHKADEKGISLHLNVPK 456

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   +S +     ++ LNL   A    P GG V I+V+  + +    +  +G   +  E 
Sbjct: 457 DPQYVSGDPYRLKQVFLNLVNNALTYTPEGGSVAINVKPREKDIQIEVADSGIGIQKEEI 516

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +                 +    V  L   ++ ++          V +  L++
Sbjct: 517 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIDVTSELGRGTVFTVTLKR 573


>gi|229132230|ref|ZP_04261086.1| hypothetical protein bcere0014_11680 [Bacillus cereus BDRD-ST196]
 gi|228651168|gb|EEL07147.1| hypothetical protein bcere0014_11680 [Bacillus cereus BDRD-ST196]
          Length = 465

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 299

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111
               +    +    T  ++    +  I   +   I  +  +                   
Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSESNLHNIVFHLHLPDHPVHIRCS 359

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 360 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKHAHLQIIDTGKGI-PKHIQKHLFHPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 461


>gi|328956406|ref|YP_004373792.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
 gi|328672730|gb|AEB28776.1| two-component sensor histidine kinase [Carnobacterium sp. 17-4]
          Length = 614

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 68/224 (30%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++ + LE L      +  I  + +++ +  +   I  +K +     
Sbjct: 381 FVSNVSHELRTPLTSMRSYLEALLDGAWKDPEIAPQFLKVTQEETDRMIRMIKDLLDLSR 440

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------------SWTGEKIDLSRER 115
                 +L         + D +     + +                          + + 
Sbjct: 441 MDSGKGTLDLEYLNVNELFDHVIKRFEMMIQSSDESSKDFSIKRNFTDRQLWVEVDADKM 500

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++L N+   A    P GG +T  + ++ +  + S+   G      +             
Sbjct: 501 IQVLDNIMNNAIKYSPDGGTITCGLVETNDSVVLSISDEGLGIPKRDLANVFDRFFRVDK 560

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++    +       + H++K ++  E  +         L 
Sbjct: 561 ARARSMGGTGLGLAISKEVVHQHKGKIWAESTEGKGTTFYISLP 604


>gi|322382238|ref|ZP_08056151.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153819|gb|EFX46187.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 385

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 21/231 (9%)

Query: 3   KNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEV 49
           +++   +   D   ++  + +   H+I +P+ +I   L++L           E G  D +
Sbjct: 155 RSLEAQVQRSDRLAMIGQIAAGTAHEIRNPLTSIKGFLQMLNKSFTEQGMCKEKGFTDIM 214

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +  I   +      L   +        VD    +  +  +I +   +     V      +
Sbjct: 215 LAEIDRVNDLVNEFLLLSKPKHVVYKPVDLPSVIKGLLPIINNEAILHDVQLVYEPAISL 274

Query: 110 DLSRERA----KILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                      ++ LN+      ++       +   V   +      ++ NG        
Sbjct: 275 PPVIADQELLKQVFLNICKNGIEAMANGGKLMIIEKVNIDEKRVNIEIRDNGPGIPV-FV 333

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +      +       + H+    +            +  L 
Sbjct: 334 LDKIFDPFFTTKEQGTGLGLSVCQQIVHDMGGHIRV-SSKGFGTTFTVSLP 383


>gi|39996107|ref|NP_952058.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982872|gb|AAR34331.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|298505123|gb|ADI83846.1| nitrogen fixation master sensor histidine kinase, PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 363

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 67/221 (30%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMSAIIRLKFMRL 69
           L + + H+I +P+G I  + +LL+               +++ +   +      L     
Sbjct: 141 LAAGLAHEIKNPLGGIKGAAQLLELELPTESELRDNVRIMLKEVERVNRIVEELLALASP 200

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRER---AKILLNLFMV 125
                  V+    +GDI  + +      +   Q  +      +  +     ++ LNL   
Sbjct: 201 RGLQLSKVNLHKVIGDILTLQKRSTEGKNVAFQQQFDPSIPPILADEGLLTQLFLNLVKN 260

Query: 126 AHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           A  ++  GG             +T   +         +  +G     PE+  Q+      
Sbjct: 261 AMEAVDDGGCIRVASRVISDYSMTQKGERRSRMVAIDVADDGPGI-PPERLEQLFTPFFT 319

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +  E++  +  E         + +L 
Sbjct: 320 TKTKGTGLGLAICQKIVTEHRGMIKVESYPGKGTTFTVMLP 360


>gi|313680469|ref|YP_004058208.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
 gi|313153184|gb|ADR37035.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
          Length = 478

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 58/234 (24%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRL 55
           +A+ +   L  ++      +   +   H++ +PI AI   +  LL    + +   + +  
Sbjct: 237 LARALNRMLERLEHAFQTQSRFLADASHELRTPITAILGHVGYLLRRTPVNEVQRESLET 296

Query: 56  SSMSAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                    K +                   V+    L +I          +  ++    
Sbjct: 297 IRREGERMTKLVTDLLELAGSEGGWRFEVRPVELRGLLQEIASEYAPTFEGEIVLEAPDE 356

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
                      ++  NL   A  +      + +         I  +  NG        P 
Sbjct: 357 VWVEGDDERLHQVFANLIANAVKAGATRITLRVRRP--PGRVIVQVSDNGPGIPPEHLPH 414

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +           +    V  +       +  E         S  L+
Sbjct: 415 LFERFYRVDKARDRAAGGSGLGLAIVKAIVEALGGEVWVESQVGEGTTFSVSLK 468


>gi|217958910|ref|YP_002337458.1| sensor histidine kinase KinD [Bacillus cereus AH187]
 gi|217067792|gb|ACJ82042.1| sensor histidine kinase KinD [Bacillus cereus AH187]
          Length = 498

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNETHAQLQITDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +    I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 494


>gi|308068151|ref|YP_003869756.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|297185569|gb|ADI24141.1| sensor histidine kinase kin1377 [Paenibacillus polymyxa]
 gi|305857430|gb|ADM69218.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 367

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 66/223 (29%), Gaps = 19/223 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64
            +  L  L  + + I H+I +P+ AI   ++LL         DE  ++I      A   +
Sbjct: 144 QNDKLAMLGRISASIAHEIRNPLTAIRGFIQLLRPHLVELGRDEYARIILTEIDRANDII 203

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL 119
                +   +    + + +  + + +             ++ +    E + +S +  +I 
Sbjct: 204 YEFLNSSKPSAPQKTAVSVMGLLKEVVMLTESEALMKGCQIALDENDELMKVSIDVKQIK 263

Query: 120 LNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  +   ++         R G + I      N     ++ NG          ++ D  
Sbjct: 264 QVILNMIKNAMDAIESIGGEREGCINIHTVLEGNYVHICIEDNGLGM-DHNTLARLFDPF 322

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +   +  +            L 
Sbjct: 323 FTTKESGTGLGLAVSYRIIKNHGGFIHVDSKHGSGTQFKITLP 365


>gi|283770756|ref|ZP_06343648.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus H19]
 gi|283460903|gb|EFC07993.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus H19]
          Length = 554

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDPQSLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVILK 550


>gi|282916952|ref|ZP_06324710.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus D139]
 gi|282319439|gb|EFB49791.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus D139]
          Length = 554

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDPQSLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGEGSTFKVILK 550


>gi|46450220|gb|AAS96868.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
          Length = 362

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 75/263 (28%), Gaps = 50/263 (19%)

Query: 1   MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDE-------------- 42
           + K        +  +    +L + + H++ +P+ AI+   E +L                
Sbjct: 97  LQKEFQAKFHQAEKMATVGMLAAGVAHEVNNPLTAINGFAEGILRRVKRLRGSVDPDLHA 156

Query: 43  --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                   ++   R         L F R        V+  + + D  +++ + +   K  
Sbjct: 157 DLTDYAGTILGECRRCQEIVHSLLTFSRPHSSAFSPVNLNVVVDDTLKLLHNHLKQPKYR 216

Query: 101 QVSWTGEKID-------LSRERAKILLNLFMVAHASLP--------------------RG 133
            V                  +  +++LNL + A  +L                     + 
Sbjct: 217 HVRIDTRLCPTAPVILGCEAQLKQVMLNLLVNALDALEAVAPSAGDSGDDAPPDAHGGKT 276

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191
             +T++    +    F+++  G+     E    + +    +        I       +  
Sbjct: 277 AVITVAPFRDERHAGFTVRDTGSGI-PQEHLHSLFEPFFTTKPVGRGIGIGLSTCYTIVT 335

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
           E+   +  E  +    V +  L 
Sbjct: 336 EHGGDISVESKEGEGSVFTVTLP 358


>gi|134299847|ref|YP_001113343.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134052547|gb|ABO50518.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 515

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 15/225 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + S  LVAL  L + + H++ +P+G +  +++++D      E ++         I 
Sbjct: 276 QEELMRSERLVALGRLVTGVAHELRNPLGIVRATVQVMDGEYKNLEGIKDYTKVICEQID 335

Query: 63  --------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKID 110
                    L F R +      +D    L  +       +  +    V        +   
Sbjct: 336 RGNKVIQELLDFGRPSKPIVSPIDLNGLLESVLTFTYPILRQNNIQLVREFTKDLPKANI 395

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            S    ++ +NL + A  ++P GG +TI+    K+        +G      +   +I D 
Sbjct: 396 DSDRIKQVFVNLILNAIQAMPGGGNLTINTFAEKDTIQVQFTDSGKGISPKDLP-RIFDP 454

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  D   +       +   +   +            +  L K
Sbjct: 455 FYTTKDDGAGLGLAISHQIIRMHGGAIWVSSTSPTGTTFNVCLPK 499


>gi|322391843|ref|ZP_08065308.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780]
 gi|321145323|gb|EFX40719.1| sensor histidine kinase VicK [Streptococcus peroris ATCC 700780]
          Length = 449

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 70/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    + +  +     +
Sbjct: 271 IDNATSNLDVELINFTAFITFILNRFDKIRAQDEEKKYEIVRDYPINSVWVEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GGK+T+S++ + ++ I S+   G      +    F +    +   
Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSISDQGLGIPKEDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|291278445|ref|YP_003495280.1| hypothetical protein DEFDS_0012 [Deferribacter desulfuricans SSM1]
 gi|290753147|dbj|BAI79524.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 383

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 65/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDL------------VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE 48
           MA      +   +L            +    S I HDI + +  I   +ELL+    +  
Sbjct: 143 MASQCALAIERYNLYEEEKKSEKLKLIGKFTSSIAHDIKNLLNIIQGYVELLEIELDDHP 202

Query: 49  VMQLIRLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
            ++    S ++ +  +  +             L        + +  +     ++  F  +
Sbjct: 203 ALKEYIDSIVTELKMIHGLTLDILDFSKKNIMLRRDEVRLSELISEIKKHADIMIKFTDI 262

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           D  +             +  ++ +NL   +  +L   G + I  +      +F +  NG 
Sbjct: 263 DFTISYENDTSLFIDKEKIFRVFMNLINNSIEALNGKGVIKIDAKVMDEYVVFEVYDNGI 322

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +                I    +       +   +   +  E  +         L 
Sbjct: 323 GIKKENIDKIFDPFFTSGKIKGTGLGLAVTKEIIIAHGGEISVESEEGEYTKFIIKLP 380


>gi|229138120|ref|ZP_04266718.1| hypothetical protein bcere0013_12440 [Bacillus cereus BDRD-ST26]
 gi|228645465|gb|EEL01699.1| hypothetical protein bcere0013_12440 [Bacillus cereus BDRD-ST26]
          Length = 486

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNETHAQLQITDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +    I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 482


>gi|168069625|ref|XP_001786518.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162661105|gb|EDQ48669.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 406

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 20/216 (9%), Positives = 60/216 (27%), Gaps = 12/216 (5%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                  +  L A+  L + I H+I +P+ ++   ++LL     E    +++        
Sbjct: 78  TKELLRQTDKLSAIGQLAAGIAHEIRNPLTSLRGFVQLLQASLAEPRYCEIMLAELDRIN 137

Query: 62  IRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
             +  +          +   + + I    I  +       +             +S +  
Sbjct: 138 FIVSELLVLAKPQQMKFQEKIPTQIIYDVISLLESQANMNNVIFHDHLERSLPTISCDEN 197

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVDGNV 172
           ++      V   ++    +      +S     +    S++  G          ++ +   
Sbjct: 198 QLKQVFINVCKNAIEALPQGGDIYVESTRLAPSRIRISIRDTGKGIDPSRIP-RLGEPFY 256

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            +  +   +       +  E+   L  E   +    
Sbjct: 257 TTKENGTGLGLMVSYRILEEHGGSLTIESEPEKGTT 292


>gi|282890083|ref|ZP_06298615.1| hypothetical protein pah_c012o006 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500011|gb|EFB42298.1| hypothetical protein pah_c012o006 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 431

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 14/223 (6%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSA 60
           I    S M ++  + + + H+I +P+G I     LL+    +   +Q     I   + + 
Sbjct: 205 IAKRNSRMKVLGEMAASVAHEIRNPLGGIKGFASLLERDLSDKPELQKMAGYIVQGTDNL 264

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEKIDLSRE 114
              +  +           + + L  +        +++  +     + +     ++ +  +
Sbjct: 265 NRLVTQVLNYSRPLQPQFASMDLVQLLEELRLHMLVDPSVKERIDINLETDLPELWIHAD 324

Query: 115 RAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
              +    LNL + A  ++P  G +T+ +   +   I  +K  G      E   +I    
Sbjct: 325 MQILRSAILNLMVNAVQAMPNHGTLTLKLIQQEELAIIQVKDTGIGI-PSENLEKIFSPF 383

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  + +      V      +   +    I       S  L 
Sbjct: 384 FTTRPEGNGFGLAEVYKAVEIHGGDIEVHSIVQKGTEFSLKLP 426


>gi|212640657|ref|YP_002317177.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212562137|gb|ACJ35192.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 604

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 63/218 (28%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  + + LE L      +  I    +++ +  +   I  +  +     
Sbjct: 380 FVANVSHELRTPLTTMRSYLEALADGAWRDEEIAPRFIEVTQNETERMIRLVNDLLQLSK 439

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                          +     + D  ++ +       R              +  ++  N
Sbjct: 440 LDSKDYKLKKTRVHFIPYFHKVIDRFELTKKENVSFVRDFPDEKIIVYMDEDKITQVFDN 499

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A    P+GG +T  V+   +    S+K  G      +    F +    +      +
Sbjct: 500 IISNALKYSPQGGTITFRVKKKGDYIEVSVKDEGVGIPKSDLSKIFERFYRVDKARSRKL 559

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E  +     +   L 
Sbjct: 560 GGTGLGLAIAKEVVVAHGGRIWAESQERKGTTIYFTLP 597


>gi|304405930|ref|ZP_07387588.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345173|gb|EFM11009.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 610

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 59/232 (25%), Gaps = 28/232 (12%)

Query: 10  SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAI 61
               L        + + H++ +P+  I +  E LD+  +++  +        R  +   I
Sbjct: 369 EQEKLEQSRREFVANVSHELRTPLTTIRSYAEALDDGALDERQLADRFVSVIRNETERMI 428

Query: 62  IRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             +  +                  +                       +       G   
Sbjct: 429 RLVTDLLHLSRFDSNQVPLRRRATSVPELLEEAADRFAFQTSQKGIRTEVYIDDAVGTVW 488

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFTQIV 168
                  ++L NL   A      GG + +S +  +      S++ +G      +   +I 
Sbjct: 489 LDRDGIDQVLDNLISNAIKYTLDGGVIVLSARKPETNALAISVRDSGIGIPKKDLG-RIF 547

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D            +    +       +   +   +  E   +    ++  L 
Sbjct: 548 DRFYRVDKARSRNMGGTGLGLSIAREIVRAHGGTITLESELNEGTTVTFTLP 599


>gi|229166268|ref|ZP_04294027.1| hypothetical protein bcere0007_12420 [Bacillus cereus AH621]
 gi|228617213|gb|EEK74279.1| hypothetical protein bcere0007_12420 [Bacillus cereus AH621]
          Length = 465

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 299

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 359

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 360 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKHAHLQIIDTGKGI-PKHIQKHLFHPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 461


>gi|197118542|ref|YP_002138969.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087902|gb|ACH39173.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 412

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 64/224 (28%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +        L   + + + H+I +P+  I    +++ +   E       +      
Sbjct: 186 MTRKVNLA----KL-GEMGALLAHEIRNPLAGIKGFAQVIAKKPQEARNAAFAQNIVTEV 240

Query: 61  IIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKID 110
           +           +           D    + +   ++       +       + +   + 
Sbjct: 241 VRLEALVNDLLAYAAGDGAQRAPFDLGELIDNTLSLLAPEAVEREVSVCCSSTCSFFVMG 300

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 + LLNL   A  ++  GG + I+   +  +   S+K  G      +   ++ + 
Sbjct: 301 NRDRIEQTLLNLGKNALQAMDAGGVLEIACASAGGQAQISIKDTGQGIAEADLP-KVFEP 359

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E+   +  E        ++  L 
Sbjct: 360 FFTTRARGTGLGLALCKKVIEEHGGTIGLESRIGEGTTVTLALP 403


>gi|229029105|ref|ZP_04185203.1| hypothetical protein bcere0028_12070 [Bacillus cereus AH1271]
 gi|228732203|gb|EEL83087.1| hypothetical protein bcere0028_12070 [Bacillus cereus AH1271]
          Length = 486

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSVIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    + +I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRNILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV +++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  + I+     +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSIEHEGTTVHIEIP 482


>gi|108805767|ref|YP_645704.1| multi-sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
 gi|108767010|gb|ABG05892.1| multi-sensor signal transduction histidine kinase [Rubrobacter
           xylanophilus DSM 9941]
          Length = 608

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 57/225 (25%), Gaps = 16/225 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                +      A   +   H++ +PI A+   LE+L++   E+   + +R         
Sbjct: 367 TEERQIQRAK--AEFIANASHELKTPISALSGYLEMLEDEQDEEVRAEFLREMRTQTERL 424

Query: 64  LK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                                   VD    L ++ +         +              
Sbjct: 425 QNLARTLLDLSRLDANAVIFRLEEVDLEDLLHELRRDFSYTGRPLRIHAEEGVPPVETDP 484

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD 169
            +  + L  L   A    P G  V ++++      +  ++  G      E    F +   
Sbjct: 485 TQLHRTLAILVDNAIKYSPEGTPVDLTLRREDGGVVIDVRDRGCGISEAEIPHIFERFYR 544

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               S  D   +       +       +  +         S +L 
Sbjct: 545 AQGSSRADGTGLGLALANEIVGHLGGEIRVQSEPGAGSTFSVVLP 589


>gi|195541892|gb|ACF98093.1| putative FixL [uncultured bacterium 1042]
          Length = 503

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 70/243 (28%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSM--DLVAL--------LCSRICHDIISPIGAIHNSLE----LLDEVGI-- 45
            +     L  +  +L  L        + S + H++  P+ AI N ++    LL ++    
Sbjct: 254 RQESAARLEEIQGELARLARLNELGEMASTLAHELNQPLSAIANYVQGCSRLLRDMDDAV 313

Query: 46  ---EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVD 97
                E ++     S+ A   ++ +R       +  +   +  + +              
Sbjct: 314 ASRMREALEEAARQSLRAGQIIRHLREFVTKGATEKAPENIRKLVEEAGALALVGSRERG 373

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSL 151
            R    +T     +  +R +I   L  +   ++    + T           +  E I  +
Sbjct: 374 IRSVFDFTPGADMVMVDRIQIQQVLTNLMRNAMEAMREGTRRDLVVRTAPHADGEVIVEV 433

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              G      +   Q+    V +      +       +   +   +  +  D+       
Sbjct: 434 SDTGPGI-SDDVAAQLFRPFVTTKPGGMGVGLSISKRIVEAHGGEIWVDSNDNGGATFRF 492

Query: 212 LLE 214
            L 
Sbjct: 493 TLP 495


>gi|78042954|ref|YP_361359.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995069|gb|ABB13968.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 445

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 22/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+ +     +  L   + + I H++ +P+  +  + ELL E     ++E ++ +     
Sbjct: 217 MAEALE---RNEKLRRQMIADIAHELRTPLSILQGNFELLLEKVIEADEETLRSLAEEVK 273

Query: 59  SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----G 106
                ++ +R                  +             +A  K +    T      
Sbjct: 274 RLSRLVEELRELSLAEAGELKILPVEVEVNQFFSEVAAPFTSLAEAKSISFETTLPAKGE 333

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
           +         +++ NL   A      GGKV + V+    + +  +   G      +    
Sbjct: 334 KYSFDPDRMKQVVYNLLTNAFQYTGEGGKVKLEVKLLDGKLLIEVTDTGPGIPPEDLPYI 393

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           F +   G    +       +       L   +  ++  E           +
Sbjct: 394 FERFYRGEKSRSRTTGGSGLGLAIAKSLVEAHGGKIWVESTVGQGTTFKVV 444


>gi|258591259|emb|CBE67556.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 697

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEV----GIEDEVMQLI 53
           + +     + S  L A+  L + + H++  P+  I     ELL +         + ++ I
Sbjct: 451 LRETQAQLIQSGKLAAVGTLAAGVAHELNQPLMIIRGYAQELLTDERVASEEIRDDLRRI 510

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK 108
              +      +  +R     +     +  L  +       + +   A D  V        
Sbjct: 511 EAQTTRMAAIINHLRDFSRESKGRREVTDLNRLVREALAFLGQQLKAHDVVVVQELDPAL 570

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPE 162
             +  +     ++LLNL   A  ++   G       +   S +    S+   G      E
Sbjct: 571 PTVWVDPLQIEQVLLNLITNARDAMESTGMGAITIRTDVVSGSRVALSVTDTGPGI-PEE 629

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLE 214
             T+I D    +        +       +  E+   L+ E    D      + +L 
Sbjct: 630 IRTRIFDPFFTTKEVGKGTGLGLSICHGIIEEHGGALIMESSVADGRGARFTMILP 685


>gi|302024080|ref|ZP_07249291.1| sensor histidine kinase [Streptococcus suis 05HAS68]
          Length = 449

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRL 55
           ++           L  S + H++ +P+ ++ + LE LDE  + + V        +     
Sbjct: 198 DMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNR 257

Query: 56  SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   L   R+              +      L   +Q+          +   +   
Sbjct: 258 MMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQIS 317

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            I +  +     ++L N+   A    P GG +T S++ + ++ I S+   G      +  
Sbjct: 318 PIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKTDLP 377

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D                 +       +  ++K  +  +    H    + +L 
Sbjct: 378 -RIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432


>gi|77917874|ref|YP_355689.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77543957|gb|ABA87519.1| GAF sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 556

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 24/233 (10%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L A+  + + + H++ SP+  I  + +L+              ++++    
Sbjct: 314 EARLMHSARLAAIGEMAAGVAHELNSPMTVIIGTAQLIHREFEAQPEVREPLEDIVNCGL 373

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
                    L F R         D    +  +  +I   I  ++   V      +     
Sbjct: 374 RCKRIIQNLLTFSRQDHLPMAETDLNEEVERVLHLIYYQIDRNQITIVKNLDPNLPLTKA 433

Query: 111 LSRERAKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             R+  ++L NL + A  +L           +            I S+K NG        
Sbjct: 434 NGRQIQQVLTNLLINARDALGGVDREKTIEVRSYAEDNGDGQWIIISVKDNGIGIPAKNL 493

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      S  +     +     + +A  +   L  E         +  L 
Sbjct: 494 -QRVFTPFYTSKEETKGTGLGLSVSLGIAEAHGGSLEVESTWGEGSCFTLRLP 545


>gi|328952433|ref|YP_004369767.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452757|gb|AEB08586.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 565

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 65/239 (27%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIE--------D 47
           A +    L S  + AL  + + I H+I +P+  I      L +LL E   +         
Sbjct: 314 AASDALLLQSSKMAALGKMAAGIAHEINNPLAVIAEKAGWLKDLLREQDFDRTSDLEEFQ 373

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQV 102
           + +  I      A      +         +   + +  +       +  +    + ++  
Sbjct: 374 DTVDKIEYHVARAKKITHRLLDFARRHEPLRENVDVNRVLEESIGFLENEAHFRNIQIHR 433

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNL 157
                   +  +  ++      +   ++          +T    +   +   ++  +G  
Sbjct: 434 ELDPHLPLVVSDTGQLQQVFLNIFDNAIDAVGKGGEITLTSRYLEKDGKVSITIADSGPG 493

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I D    +        +       +  +    +          + + +L 
Sbjct: 494 I-PEEILKKIFDPFFTTKEVGKGTGLGLSITYSIIKKLGGEITVANKPGQGALFTIILP 551


>gi|289168018|ref|YP_003446287.1| histidine kinase [Streptococcus mitis B6]
 gi|288907585|emb|CBJ22422.1| histidine kinase [Streptococcus mitis B6]
          Length = 449

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 70/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +Q+          +   +    + +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T++++ + ++ I S+   G      +   +I D        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++   +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|228994184|ref|ZP_04154084.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
 gi|228765636|gb|EEM14290.1| hypothetical protein bpmyx0001_49070 [Bacillus pseudomycoides DSM
           12442]
          Length = 611

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 384 FVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 443

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   V +       +      + +  ++L N
Sbjct: 444 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFSKKSRFIDMDADKITQVLYN 503

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D ++    S+   G      E   +I +            
Sbjct: 504 IISNALKYSPEGGTVTYRLRDREDMLEISVSDQGMGI-PKENVEKIFERFYRVDKARSRQ 562

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +  +L 
Sbjct: 563 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFVLP 601


>gi|149914562|ref|ZP_01903092.1| molybdenum cofactor biosynthesis protein A [Roseobacter sp.
           AzwK-3b]
 gi|149811355|gb|EDM71190.1| molybdenum cofactor biosynthesis protein A [Roseobacter sp.
           AzwK-3b]
          Length = 675

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 68/230 (29%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
           + +     + S  L A+  + + + H+I +PI  I  +L++       +        +LI
Sbjct: 441 LERTTERLIMSEKLAAVGEITASVAHEINNPIAVIQGNLDVARSVLDRDADKVQTEFRLI 500

Query: 54  RLSSMSAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                   + +  +                  VD +     + +   +   +D   + S 
Sbjct: 501 DDQVYRISVIVSKLLQFAKPEEYSGAANVISPVDVVRDCLVLTRHQTEVADIDVVTEFSS 560

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             + I    E  ++++NL + A  ++   G++++ V D +   +  +   G         
Sbjct: 561 ENKVIMSRTELQQVVVNLILNAVHAMGAKGRLSLGVHDEEGGVVIRVDDTGQGIDAAVLK 620

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +   +       L      ++               L 
Sbjct: 621 RIFDPFFTTKQAEGTGLGLSISQTLVTRAGGQITVTSTPGTGSRFRVWLP 670


>gi|330832446|ref|YP_004401271.1| sensor histidine kinase [Streptococcus suis ST3]
 gi|329306669|gb|AEB81085.1| sensor histidine kinase [Streptococcus suis ST3]
          Length = 449

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRL 55
           ++           L  S + H++ +P+ ++ + LE LDE  + + V        +     
Sbjct: 198 DMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNR 257

Query: 56  SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   L   R+              +      L   +Q+          +   +   
Sbjct: 258 MMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNTDSDKVYTIVRDYQIS 317

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            I +  +     ++L N+   A    P GG +T S++ + ++ I S+   G      +  
Sbjct: 318 PIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKTDLP 377

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D                 +       +  ++K  +  +    H    + +L 
Sbjct: 378 -RIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432


>gi|148654412|ref|YP_001274617.1| GAF sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148566522|gb|ABQ88667.1| GAF sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 844

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
           +       + S  L A+  L + + H++ +P+ A+     +L EV   +    L      
Sbjct: 467 LRIAQQRLIQSERLTAVGELVAGVAHELNNPLTAVLGFAGILQEVAPAEYQHDLTMIVES 526

Query: 55  --LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110
              +       L F R    +   VD  +    +  ++   +             ++   
Sbjct: 527 ATRARRIVQNLLTFARQREAHLEEVDLNLAARQVLSLLAYQMRTHNITVEERLQPQLPLT 586

Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISV-------QDSKNENIFSLKINGNLARFP 161
              +    +++LNL   A  +L         V       ++++   +  +   G     P
Sbjct: 587 VADATAIKQVMLNLLNNAQQALASWSGRRTIVVTTRLELRENRQWLVLEIADTGPGI-AP 645

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    +    +   +       +  +    +  +         +  L 
Sbjct: 646 EHLPRIFEPFFTTKPVGEGTGLGLSICYGIVRQYHGNIRVQSAPGKGACFTVELP 700


>gi|309790318|ref|ZP_07684885.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227652|gb|EFO81313.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 987

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 61/245 (24%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEV------GIED 47
            K +   L      A           + + H++ +P+ +I    ELL+            
Sbjct: 463 RKEVERTLREAKEAADSANRAKSQFLATMSHELRTPLTSIIGYAELLNRALTPIANDEVM 522

Query: 48  EVMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
             ++ I+++    +  +                +   V     +  +   ++  I  +  
Sbjct: 523 HDLRRIQVAGAHLLAIINDVLDLSKIEAGHMQVHPAPVRLDKLVQAVVDTVQPVIVRNTN 582

Query: 100 V----QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                 +   G  +       +ILLNL   A      G          +    F++   G
Sbjct: 583 QLLVQGLDDAGLMVTDEVHVRQILLNLLSNAGKFTTNGQITLRISGTPE-MVYFAVHDTG 641

Query: 156 NLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +      D      +         +       LA      +  E         +
Sbjct: 642 IGIHPEQAKQLFRDFVQVDASTTRKYGGTGLGLALSRRLARLLGGDITLESALGEGSTFT 701

Query: 211 ALLEK 215
             L +
Sbjct: 702 LSLPR 706


>gi|255007676|ref|ZP_05279802.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313145371|ref|ZP_07807564.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134138|gb|EFR51498.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 919

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK     +  +    L  + + H+I +P+ AI     LL +    +E  + I++   +  
Sbjct: 694 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDLEERREYIKIVQENND 751

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                       G  D  +   DI +  +  +     +       +  
Sbjct: 752 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGVELVFDPHPSECS 811

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G       +  +    F ++  G      +     
Sbjct: 812 VVSDRNRLHQVISNFVNNALKFTSSGSIRVGYEEK-EECVEFYVRDTGIGIPAGQLPHIF 870

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  + I    +       +  +    +  +  +         + K
Sbjct: 871 ERFVKLNTFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIPK 919


>gi|160934993|ref|ZP_02082379.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753]
 gi|156866446|gb|EDO59818.1| hypothetical protein CLOLEP_03869 [Clostridium leptum DSM 753]
          Length = 581

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 67/224 (29%), Gaps = 22/224 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFM 67
             L +   + + H++ +P+ +I   +ELL     +         ++ + +      +  M
Sbjct: 355 QQLRSEFVANVTHELKTPLTSIRGFIELLKSGDRDEETRQYFYDVLDIEAERLHHLIDDM 414

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVSWTGEKIDLSRERA 116
            +      + D +  +        + +               R++               
Sbjct: 415 LVLSQIENAKDDVQTVPCNLNQEIETVLRRAKPIAEKNGIVLRLEAEEAFLVASSPTRLQ 474

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           ++  NL   A       G+VT+++Q  +N  +  +K  G      E   ++ +       
Sbjct: 475 QLFGNLVENAIKYNKPQGRVTVTLQRQRNMVLVKVKDTGIGI-PQEHLPRLFERFYRVDS 533

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I    +    V  LA      +  E +     V +  L 
Sbjct: 534 SRSREIGGTGLGLSIVKHLAGLYHGDVSVESVVGEGSVFTVRLP 577


>gi|303248425|ref|ZP_07334685.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302490223|gb|EFL50141.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 314

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 72/238 (30%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------------EVGIE 46
           + +     L S  L ++  L S I H+I +P+  I   L+L              ++   
Sbjct: 77  LREMNLSLLQSQKLASIGELSSGIAHEINNPLAIITQELDLARELLAGGPCLAETDLDDA 136

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQ 101
            + ++ I             +         V     L  + + +      +    D  + 
Sbjct: 137 RDSLREIASQVDRCRQITHKLLNFARKMDPVLQEEALDRVIEDMAILVEREARGRDVAIV 196

Query: 102 VSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             +  +   +  +     +++LNL   A  + P+GG +T+S +      + +++  G+  
Sbjct: 197 RDYASDLPPVRTDVPLLRQVILNLLTNALHATPKGGAITLSTRRKGKWAVIAVRDTGSGI 256

Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P    +I D    +        +       +       L            +  L 
Sbjct: 257 -SPANMEKIFDPFFTTKQPGQGTGLGLSLSHGIVARLGGTLAAVSPPGEGATFTVTLP 313


>gi|268315760|ref|YP_003289479.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262333294|gb|ACY47091.1| PAS/PAC sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 691

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 68/233 (29%), Gaps = 24/233 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK     ++ +   + L S I H+I +P+  +    E+L+E  +++   +L  L   S  
Sbjct: 440 AKERAEEIARLK--STLLSNISHEIRTPLAGVIGFAEVLEEE-LDEPHRELAALIRDSGR 496

Query: 62  IRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             L+ +                    +  + +    +   +++I+D     +        
Sbjct: 497 RLLETLNTLLDLARIEAGAFVLTPEPFDAADEVRQSVRIFQRMIDDKGLRLELDLPDAPL 556

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT- 165
                     +I++NL   A       G + + +    +     ++  G           
Sbjct: 557 PVYLDRNGFHRIVVNLVSNAVKFTDE-GMIRVGLAAEGDWLRLQVQDTGVGIDPAFMPHL 615

Query: 166 ----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +  +  T     +       L      R+  +         +  L 
Sbjct: 616 FEEFRQENNGLARTHPGSGLGLAITHRLVEMMGGRIEVQSEKGKGTTFTVWLP 668


>gi|312872733|ref|ZP_07732798.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325912287|ref|ZP_08174684.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
 gi|311091775|gb|EFQ50154.1| PAS domain S-box protein [Lactobacillus iners LEAF 2062A-h1]
 gi|325475946|gb|EGC79115.1| PAS domain S-box protein [Lactobacillus iners UPII 143-D]
          Length = 612

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L++   ++     + + +I+  
Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420

Query: 57  SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   I  +                 +            L     + +         +R+ 
Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     + +  +++ N+   A    P GG +TI +  +    I S+   G      
Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK 540

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D                 +       +   +  ++  +  + +       + 
Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|259500799|ref|ZP_05743701.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|302190751|ref|ZP_07267005.1| two-component system sensor histidine kinase [Lactobacillus iners
           AB-1]
 gi|309804083|ref|ZP_07698164.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|312871187|ref|ZP_07731285.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|312873315|ref|ZP_07733370.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|312874960|ref|ZP_07734979.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|325913630|ref|ZP_08175992.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
 gi|259167493|gb|EEW51988.1| histidine kinase [Lactobacillus iners DSM 13335]
 gi|308163851|gb|EFO66117.1| PAS domain S-box protein [Lactobacillus iners LactinV 11V1-d]
 gi|311089705|gb|EFQ48130.1| PAS domain S-box protein [Lactobacillus iners LEAF 2053A-b]
 gi|311091195|gb|EFQ49584.1| PAS domain S-box protein [Lactobacillus iners LEAF 2052A-d]
 gi|311093201|gb|EFQ51547.1| PAS domain S-box protein [Lactobacillus iners LEAF 3008A-a]
 gi|325476989|gb|EGC80139.1| PAS domain S-box protein [Lactobacillus iners UPII 60-B]
          Length = 612

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L++   ++     + + +I+  
Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420

Query: 57  SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   I  +                 +            L     + +         +R+ 
Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     + +  +++ N+   A    P GG +TI +  +    I S+   G      
Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK 540

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D                 +       +   +  ++  +  + +       + 
Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|253577430|ref|ZP_04854746.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251843230|gb|EES71262.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 538

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 55/233 (23%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55
           + ++      + + +    +   H++ +P+ +IH  LE+L              +  +  
Sbjct: 304 LEESFEAEREAKEQMRRFVADASHELRTPLTSIHGFLEVLLRGAANRPEQLHTALNSMLG 363

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            +      ++ +              T      +       +       +    +     
Sbjct: 364 EAQRMKKLVEDLLTLAKLDRTPVVQRTQVRLDKVIAEMEPHLRMLAGEREVLFDLQPGLT 423

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA---RFPEK 163
            +    +  +++LNLF  A                    +    ++ NG        P  
Sbjct: 424 AMCDRDKIKQVVLNLFHNAVQHTDPQQGTIAVRLSAHPRQAELDVRDNGPGIAPEHLPHV 483

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +       +   +   +               L 
Sbjct: 484 FERFYRIDASRTRKQGGAGLGLSISQAIVEAHGGTIEVHSEPGQGATFRVTLP 536


>gi|157363850|ref|YP_001470617.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
 gi|157314454|gb|ABV33553.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
          Length = 421

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 32/240 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M K    N    ++     S + H++ +P+ +IH   E L      +    D  +++I  
Sbjct: 178 MTKEYELN----EMRREFVSNVSHELRTPLTSIHGYAETLLNDPDMDAETRDRFLKIIEN 233

Query: 56  SSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            S      +  +          A      +D    +  +  + E     D  V+V +  E
Sbjct: 234 ESARMSRLINDLLDLERLESGEARFDFQKIDLCSVVKYVVSITEPLSI-DYDVKVEYDCE 292

Query: 108 KIDLSRERAKILLNLFM---VAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
           ++ +  ++ +++  L      A            KV+ISV+   ++ +  +   G     
Sbjct: 293 EVTIDGDQDRLIQMLLNLADNAVKYTSLKESGEKKVSISVKKEGSQAVIRVSDTGPGM-P 351

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I D            +    +    V  +   +  ++  E         +  L 
Sbjct: 352 RDALNRIFDRFYRVDKGRSRKMGGSGLGLSIVKTIVDRHNGQIFVESEPGAGTSFTVKLP 411


>gi|197117483|ref|YP_002137910.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197086843|gb|ACH38114.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 364

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 69/224 (30%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +  L AL  L + + H+I +P+ +I  + E+L E G      + + +    +  
Sbjct: 139 EEQLRRAERLSALGELSAILAHEIRNPLASIRGTAEILREDGAAANRDEFLGILVKESDR 198

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKID----LS 112
               +        S  ++    DI   + +        A  + V++ +T  ++       
Sbjct: 199 LNHVVEDFLRMARSEPAIKKECDINYELANMVTLLSAQARGEEVELRFTPGEVPTLSADP 258

Query: 113 RERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +  +  +N+ +    +   GG+V  T S              NG      E   +I + 
Sbjct: 259 EKLRQAFMNVILNGIQASAPGGRVLVTTSYDRQSRSIEIRFSDNGPGI-AREAIGKIFEP 317

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   +   L  E          A L 
Sbjct: 318 FFTTKGSGTGLGLSITKKILEGHGGTLEVESTPGEGACFRARLP 361


>gi|91203170|emb|CAJ72809.1| similar to two component histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 815

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 73/253 (28%), Gaps = 40/253 (15%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----------LLDE----- 42
           + +     L S  + +L  L + I H+I +P+G I ++LE           +L+E     
Sbjct: 561 LERTQMQLLQSEKMASLGQLAAGIAHEINNPVGYISSNLEWMHNKFAVIKAMLEELKIES 620

Query: 43  -----------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD 85
                                +E M+  R           F   +       D    +  
Sbjct: 621 KPQSHPWDNRKNIASHMEKSINESMEGTRRIQSIVNSLRIFSHRSEDKPEPADINAEIES 680

Query: 86  IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDS 143
              +I + I     +  S+          R   ++ +N+ + A  +L   G++ I+    
Sbjct: 681 ALNIIRNEIKYKATLIKSYGDIPPIPCNRRQLGQVFMNIILNAAQALKEMGEIRIATYRK 740

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEI 201
                  +  NG      +   +I +    +        +       +   +   +  + 
Sbjct: 741 DYFIFIVISDNGPGIPEQDLP-KIFEPFFTTKEPGMGTGLGLSIAYNIIASHNGTIEVDS 799

Query: 202 IDDHNVVLSALLE 214
             +     +  L 
Sbjct: 800 KVNTGTTFTIKLP 812


>gi|294814188|ref|ZP_06772831.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|326442586|ref|ZP_08217320.1| histidine kinase [Streptomyces clavuligerus ATCC 27064]
 gi|294326787|gb|EFG08430.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 549

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 57/215 (26%), Gaps = 19/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70
           L   I H++ +P+  +   +E L +       E++  +    M     +  ++       
Sbjct: 322 LTGDIAHELRTPLANLRGYVEALQDGYVEPTPELLDSLHEEVMLQQRIVDDLQDLALAEA 381

Query: 71  ---FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILLNLF 123
                +   VD    L                   +                 +++ NL 
Sbjct: 382 GALTYHRVDVDLRELLETCRTAHHARAEAATVTLTTAPPATPVLVHADPDRLRQVVGNLL 441

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST--IDS 178
             A  + P GG VT+++       I  +   G        P  F +    +         
Sbjct: 442 TNAIRATPPGGTVTLALVPHGELAIIHVHDTGTGISEDALPHLFDRFWRADAARGRQTGG 501

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    V  +  ++   +  E         +  L
Sbjct: 502 SGLGLAIVRQIVRDHGGTVGVESTVGVGTTFTVTL 536


>gi|262274565|ref|ZP_06052376.1| sensory box histidine kinase/response regulator [Grimontia hollisae
           CIP 101886]
 gi|262221128|gb|EEY72442.1| sensory box histidine kinase/response regulator [Grimontia hollisae
           CIP 101886]
          Length = 834

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 55/240 (22%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       + +     L  + I H+I +P+  I  +  L+ +  +     + + + + S+
Sbjct: 442 LVDARERAIKAARAKQLFLANISHEIRTPMNGILGAASLMQDEPMSARQAEYLSVIAHSS 501

Query: 61  IIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +                        D       +  ++   I    ++   +  E  
Sbjct: 502 RGLMALINDLLDFSKMESNHLKLEEAPFDLEKLGKYVHDLMLPTINNKPQLAFEFRYEDT 561

Query: 110 DLS------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLAR 159
                        +++LNL   A      G          +          +   G    
Sbjct: 562 CPRYFLGDAHRIEQVMLNLVSNALKFTETGVVSFSISMRKEQGGYTGVCLRVSDTGVGIA 621

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           D +         +       L       +  E       V +  L 
Sbjct: 622 PEKHNMIFDEFQQADTSTTRQFGGSGLGLAITKQLVDLMGGTISVESELGRGSVFNVFLP 681


>gi|158520443|ref|YP_001528313.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfococcus oleovorans Hxd3]
 gi|158509269|gb|ABW66236.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfococcus oleovorans Hxd3]
          Length = 598

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 69/220 (31%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59
               L A+  L + + H+I +P+ +I               ++  +   +++ +   S  
Sbjct: 371 RKEKLAAIGELAAGVAHEIRNPLSSIKGIASYYKSKFEDGSEDKEMAGVMIEEVDRLSRV 430

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
               L+F R         D    L    ++  ++  A    +Q++ T E I+   +  ++
Sbjct: 431 ISELLEFARPTKLNRKLSDMNELLKHSTRLVEQEAAAKKVDIQLNLTSESIEADVDPDRL 490

Query: 119 LLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
                 +   +L            S   +       +K NG+     +   +I D    +
Sbjct: 491 TQCFLNLFLNALQAMESGGRLTVSSSTGANGNVAIDIKDNGSGISAEDLS-KIFDPYFTT 549

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +   ++ ++          V S  L 
Sbjct: 550 KPKGTGLGLAIVHKIIEAHQGQIKVRSTIGQGTVFSIALP 589


>gi|224368321|ref|YP_002602484.1| AtoS1 [Desulfobacterium autotrophicum HRM2]
 gi|223691037|gb|ACN14320.1| AtoS1 [Desulfobacterium autotrophicum HRM2]
          Length = 506

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLI 53
           M K +     +  L AL  L + + H+I +P+G I    +L+ +   E      + +++I
Sbjct: 268 MEKQMA---QAEKLAALGELSAGVAHEINNPLGIILGYTQLMLKNEPEGKSNNHDDLKII 324

Query: 54  RLSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108
                +        L F R +    G V+    + D+   +          + +      
Sbjct: 325 EKHVHACRTVVSDLLTFSRKSSTDNGQVNINKVIDDVVKFLGNHPDLRMVDILLDHDPSN 384

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEK 163
             +     + L  + +    +     +    +      ++KN+ + S+  NG      E 
Sbjct: 385 QLMVTGNEQELRQVMINLLINAGHAVEKRGVITITARANTKNQVLISVSDNGCGIDKKEL 444

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              I +    +    +   +       +   +   +  +       V + +L +
Sbjct: 445 SD-IFNPFFTTKPVGEGTGLGLSVSYGIISNHGGDITVKSTPGTGTVFTVILPR 497


>gi|78221571|ref|YP_383318.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78192826|gb|ABB30593.1| multi-sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 482

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 63/232 (27%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
           +I        +   + S + H++ +P+ A+    E L     +   +   +Q I   +  
Sbjct: 250 DITERKEMERMKDEMISAVSHEMHTPLTAMIGFTEFLLENEVDREQQKNCLQTIHKETER 309

Query: 60  A----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                            M        SV  L+                            
Sbjct: 310 LSELINNFLQLQRLKASMVKFRIMPVSVGLLLADAAALYTAASRKHTIVVECPPDLPPVR 369

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++  NL   A    P GG VT+  +   +  +F +K NG     PE   ++ +
Sbjct: 370 GNEEQLYQVAGNLISNAIKYSPAGGTVTLGGRADDDMVVFWVKDNGVGI-SPEFQERVFE 428

Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       +    +    V  +   +  R+  E   D        L +
Sbjct: 429 RFFRVDNSDRRKVGGAGLGLTLVREIVAAHGGRVWVESTPDAGSTFFVSLPR 480


>gi|320120642|gb|EFE27962.2| sensory box histidine kinase YycG [Filifactor alocis ATCC 35896]
          Length = 602

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 57/219 (26%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +PI  I    E L      +  I  + M++I   S      ++ +     
Sbjct: 378 FVANVSHELKTPITTIRTYSETLLDGALKDPAIAKKFMEVIVKESDRMTSLIRDLLQLSH 437

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------------KIDLSRERAKILL 120
                ++          +         +      +                  +  ++++
Sbjct: 438 IDFKKETWNFDYTDINTLIQDSIDKMELYYQTKHQTLVSNLLGQSRQIWVDKTKMEQVII 497

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A       GK+++S+  S+      ++ NG      +                  
Sbjct: 498 NILSNAIKYTEENGKISLSLFVSEGILDIVIEDNGIGIPKEDVEHIFDRFYRVDKGRSRQ 557

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +  E+   +          V +  L 
Sbjct: 558 QGGTGLGLSIAKHIVEEHGGSISVRSDFGKGTVFTISLP 596


>gi|296133450|ref|YP_003640697.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thermincola sp. JR]
 gi|296032028|gb|ADG82796.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thermincola potens JR]
          Length = 354

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 69/230 (30%), Gaps = 18/230 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            K +   +  +    A+  L + I H++ +P+ ++   L+L  +       +   +++++
Sbjct: 124 QKQLEEQMYQTEKFSAIGELAAGIAHEVRNPLTSVQGFLQLFAQNTGPEDPKKAYLEIMQ 183

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                A   +K   L       +             +  ++     +    +        
Sbjct: 184 KEIDRANAIVKQFLLLAKPVLPIKKGTAMDKLIEEVVCLLQVEAGRYGVEIQTNYAKGLP 243

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +  ++LLN+      ++P GG   +    +  +N+    +   G         
Sbjct: 244 LVAIDREQIKQVLLNICKNGIYAMPNGGLLSIETEYEAVQNKVHVIISDTGQGIDPFTL- 302

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +  D   +       +   ++ ++              +L 
Sbjct: 303 EKIFDPFFTTRADGTGLGLTVSYKIVQNHEGKIEVRSEVGKGTTFRVILP 352


>gi|148265437|ref|YP_001232143.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146398937|gb|ABQ27570.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 406

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 76/229 (33%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           M +     L      ++V L  L + + H+I +P+G I    +L++E             
Sbjct: 176 MRREEIHRLEMHHREEMVRLGELGALLAHEIRNPLGGIKGFAQLVEESDDAQRSAGFASK 235

Query: 56  SSMSAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               A      +            A         +     + +   +   +D ++ ++  
Sbjct: 236 IVAQASRLEDLVNDLLAFAREEKDAHLPLDLAPLVEESVALVRHEAEQQHIDVKLSIAHG 295

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +    ++LLNL   A  ++P GG++   ++  +N  I ++  NG   +      
Sbjct: 296 IVVPIAAERIEQLLLNLCKNAVQAMPDGGELRAELRRERNMAIITIADNGIGIQPTYL-D 354

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +    S +    +       +A E+   +  +   +   V +  L 
Sbjct: 355 HIFEPFWTSKVRGTGLGLALCRRIAEEHGGAVRVKSAVNQGSVFTVELP 403


>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
           73102]
 gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
           [Nostoc punctiforme PCC 73102]
          Length = 989

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 75/233 (32%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56
           +++        +     S + H++ +P+ +I+ SL +L       +      ++Q+   S
Sbjct: 706 RDVTERKQIERMKDEFVSVVSHELRTPLTSIYGSLGMLASGLLPTDSEQGKRLLQIAADS 765

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106
           +   +      + +    +G       + +I  +I   + V + +           + +G
Sbjct: 766 TERLVRLINDILDIERIESGKAKMEAEICNIVDLITQAVNVIQPLADKAGVTLSISALSG 825

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
           + +       + L NL   A      G  V +  Q   +E + ++K  G      +    
Sbjct: 826 QVLADCDRIVQTLTNLLSNAIKFSSAGSTVWLGAQQEGDEVLLTIKDTGRGIPTDKLESI 885

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +       D   +       +  ++  R+  E I          L 
Sbjct: 886 FERFQQVDSSDSRNHDGTGLGLAICKSIMQQHGGRIWAESILGEGSTFYVTLP 938


>gi|229011902|ref|ZP_04169082.1| hypothetical protein bmyco0001_23480 [Bacillus mycoides DSM 2048]
 gi|228749316|gb|EEL99161.1| hypothetical protein bmyco0001_23480 [Bacillus mycoides DSM 2048]
          Length = 614

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 367 KKAEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 426

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110
                  +F+ +A     + +        + V+           +               
Sbjct: 427 RIEAILQEFLSIAKTDEINTEKKNIYQIFKNVVSLINTKAIMTNIQVELFTDSKEIIIEC 486

Query: 111 LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++  GG       +  KN  + S+   G      E+  ++ +
Sbjct: 487 SENQLKQVFINILQNSIEAMLNGGGISIHIKEIHKNGVVISVIDEGIGI-PEERIKRLGE 545

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 546 PFYSTKEKGTGIGLMLSYKIIESHQGTISIMSEVGVGTTVTMYLPK 591


>gi|162451352|ref|YP_001613719.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161161934|emb|CAN93239.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 636

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
            +       ++     +   + HD+ +P+ AI     LL        +     + ++ I 
Sbjct: 399 KRARAEAQEAVRQREQMLGIVAHDLRNPLSAIMLRAALLKRELASRVDEEKWRDGVRTIE 458

Query: 55  LSSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            ++  +   +             + +        D +    +  ++     ++   V+V 
Sbjct: 459 RAARHSNRLIADLLDVASIDAHRLSILPAPHEVSDLVADATETVRLGATGRSLSVHVEVP 518

Query: 104 WTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               ++   R+R  ++L NL   AH   P GG + +  +    E    ++ +G      E
Sbjct: 519 TDLPRVLADRDRVVQVLSNLLGNAHKFTPDGGTIGVRAEALDGEVGIHVRDSGVGI-AAE 577

Query: 163 KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++I D              +       +   +  R+  E         S  L 
Sbjct: 578 HLSRIFDPYWTRPNNRQRGTGLGLAIARGIVQAHGGRIWVESRVGDGSTFSFTLP 632


>gi|226314663|ref|YP_002774559.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
 gi|226097613|dbj|BAH46055.1| two-component hybrid sensor and regulator [Brevibacillus brevis
           NBRC 100599]
          Length = 962

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 61/230 (26%), Gaps = 21/230 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
              + +  M   +   S + H++ +P+ ++    ELL     +   +   +  I   +  
Sbjct: 579 TKEYEIDQMK--SEFVSTVSHELRTPLASVLGFAELLLTKKLKPERQQRYIATIYQEATR 636

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
               +              +          +   I    RVQ      ++DL  E+    
Sbjct: 637 LTALINDFLDLQRMESGRQTYELENVAIDQVIRDIFELHRVQSPLHRFELDLQTEKTVVS 696

Query: 116 ------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++ LNL   A    P GG V +  +   N  +  ++  G              
Sbjct: 697 GDQAKLHQVFLNLISNAVKYSPHGGHVRVGCRQDGNRLLVEVQDEGLGIPSEAIPHLFTK 756

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      I    +    V  + H +   +            +  L 
Sbjct: 757 FYRVDNSDRREIGGTGLGLAIVQEIVHMHHGEVSVISESGKGSTFTVTLP 806


>gi|148264971|ref|YP_001231677.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
 gi|146398471|gb|ABQ27104.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
          Length = 394

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 65/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     + S  L  L  L + + H+I +P+ +I   ++L+     + E ++ +     
Sbjct: 166 LQRAQAEIVQSEKLATLGYLSAGMAHEIRNPLNSISLFVQLIKSGMEDLEKLEYVEKILK 225

Query: 59  SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   +                          L      IE      +R   S    
Sbjct: 226 EIDRIDGILRKLLDASKRPKFEIMDVMIDRVIDSTLEIFSPQIELHKIKVERDYRSIPPA 285

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I  NLF+ +   +P  G + + +       +  +   G     PE    +
Sbjct: 286 IKADPSELEQIFTNLFLNSINEMPLAGTLKVQLNYDAKYIVVRVSDTGKGI-PPENIPYV 344

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V+ +    K ++  E  D         L 
Sbjct: 345 FDPFFTTNSRGTGLGLSVVLRIVKNYKGKIEVEKSDASGTTFCIKLP 391


>gi|172058878|ref|YP_001815338.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991399|gb|ACB62321.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 714

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 63/232 (27%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           +     +  +     L S + H++ +P+ +I   +ELL             ++++   + 
Sbjct: 476 RTEEQKMDHVK--DELISTVSHELRTPLSSILGFMELLRYRQPTPEKTTRYVEIVHEEAK 533

Query: 59  SAIIRLKFMRLAFGY----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                L                     S+  L+                  V        
Sbjct: 534 RLTNLLNDFLDIQRMEGGKQDYAFKPFSLRQLLEETIETFGETAETHTIHAVTDDDPILI 593

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++++NL   A    P    + + ++ + ++ I S+   G        F ++ 
Sbjct: 594 FADEDKVKQVIINLLSNAIKYSPAADHIDVRLEKTADQAILSVTDYGIGIPPT-AFDKLF 652

Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        I    +       +   +   +  E   +     + +LE
Sbjct: 653 TKFYRVDNSAVRKIGGTGLGLAICKEIIESHGGAISVESELNQGSTFTIVLE 704


>gi|332704289|ref|ZP_08424377.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332554438|gb|EGJ51482.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 614

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
                L  +    ++ +   H++ +P+ +I  S++LL +         E +++ + +   
Sbjct: 382 TRLRELDRLKSEFVMTA--SHELRTPLTSIGMSIDLLKDKAGSKLSDRERQLLTVAQEDV 439

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  +            +        +I +  A     Q    G ++  S +   
Sbjct: 440 QRLKALVNELLDLSKIEAGKLEIDFERVPLPLICEKTAKIMATQAEQAGVELAFSCDEGL 499

Query: 115 ---------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                       +L+NL   A    P  G V ++ + +      S+  +G          
Sbjct: 500 PEVRVDPNKITWVLVNLVGNALRHTPENGHVRVAAKQAGRFAHVSVSDDGEGIPLEFQTK 559

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F + V      T     +       +   +   +  E         +  + 
Sbjct: 560 IFDKFVQVKSRRTSSGTGLGLAICKEIVRAHGGTIWVESTPGKGTTFTFTVP 611


>gi|86158330|ref|YP_465115.1| signal transduction histidine kinase NtrB [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774841|gb|ABC81678.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 747

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 17/230 (7%), Positives = 57/230 (24%), Gaps = 26/230 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
               L AL  + + + H+I +P+ AI  +++ LD   + ++  +   +           +
Sbjct: 474 ERDRLAALGEMSAGLAHEIRNPLAAIKAAIQYLDPRKVPEDDREFFEIVVEEVNRLNGVV 533

Query: 68  RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                Y+  +            L    ++++  +    R+ +        +  +  ++  
Sbjct: 534 SQFLDYSRPLKPSLAPTQVNEVLEKTFKLLQAEVPEAVRLDLDLAEWLPRVQADAEQLKQ 593

Query: 121 NLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164
               +A  +     +                         +      +  G      +  
Sbjct: 594 VFLNLALNAFQAMPRGGRLTVSTRLARDELAFWREGARRADLVEIRFRDTGPGI-PDDAR 652

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I      +      +       +    +  ++              L 
Sbjct: 653 ESIFVPFYTTKEKGTGLGLAICQRIVKAQQGTIVVRSAAGEGAEFLISLP 702


>gi|322417861|ref|YP_004197084.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320124248|gb|ADW11808.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 493

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 70/223 (31%), Gaps = 19/223 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMS 59
            +  L ++  + + I H+I +P+  I  ++ +L +    ++        V++ I     +
Sbjct: 252 RADRLASVGEMAAGIAHEIKNPLTGIAAAITVLKDDFAPEDGRALIIGEVLEQISRLDKT 311

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDLSRER 115
               L F +         D    L  I               K              ++ 
Sbjct: 312 VNDLLFFGKPTVAEPACTDINSALKKILIFASQHRGGKNIEKKLELAEDLPPVYVDPKQI 371

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGN 171
            ++ LNLF+ A  ++  GG +T++   ++    +     +   G     P+   +I    
Sbjct: 372 QQVFLNLFLNAVQAMQSGGTLTVTSCLAEIDGMDMVQVRVTDTGQGI-PPQILEKIFTPF 430

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       L  ++  RL     D      +  L 
Sbjct: 431 FTTKAQGTGLGLAISHRLIEQHGGRLSCVSQDGVGTTFTVELP 473


>gi|56420149|ref|YP_147467.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56379991|dbj|BAD75899.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 430

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 70/224 (31%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +A+     +  M +V+ + + I H+I +P+  +   ++LL         E+  +++    
Sbjct: 193 LARAELMKMEKMQIVSQMAASISHEIRNPLTVVKGFIQLLQTGRLPRETEERYIRIALEE 252

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111
              A   ++               I +          +          V  S     +  
Sbjct: 253 LERAEAIIRDYLTFAKPAPKETEPIDVATQLQKVLQMITPMAHMHSIHVSSSLEHGVVIG 312

Query: 112 SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           + +  +    NL   +  ++P GG + ++ ++     + ++  NG      E+  +  + 
Sbjct: 313 NVQYFQQCFLNLLKNSIEAMPNGGTLHVAAENRGASVVITISDNGVGM-TKEQVRRFGEP 371

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +     + +  +       E        L+  L 
Sbjct: 372 YFSTKEKGTGLGAMVAVKIIEQMGGTWTIESAVQKGTTLTITLP 415


>gi|315654108|ref|ZP_07907024.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|329919831|ref|ZP_08276782.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
 gi|315488804|gb|EFU78450.1| sensor histidine kinase VicK [Lactobacillus iners ATCC 55195]
 gi|328937178|gb|EGG33606.1| PAS domain S-box protein [Lactobacillus iners SPIN 1401G]
          Length = 612

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L++   ++     + + +I+  
Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420

Query: 57  SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   I  +                 +            L     + +         +R+ 
Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     + +  +++ N+   A    P GG +TI +  +    I S+   G      
Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK 540

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D                 +       +   +  ++  +  + +       + 
Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|310640943|ref|YP_003945701.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245893|gb|ADO55460.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 367

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 66/223 (29%), Gaps = 19/223 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64
            +  L  L  + + I H+I +P+ AI   ++LL         DE  ++I      A   +
Sbjct: 144 QNDKLAMLGRISASIAHEIRNPLTAIRGFIQLLRPHLVELGRDEYARIILTEIDRANDII 203

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL 119
                +   +    + + +  + + +             ++ +    E + +S +  +I 
Sbjct: 204 YEFLNSSKPSAPQKTAVSVMGLLKEVVMLTESEALMKGCQIALDENDELMKVSIDVKQIK 263

Query: 120 LNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  +   ++         R G + I      +     ++ NG          ++ D  
Sbjct: 264 QVILNMIKNAMDAIESIGGEREGCIDIHTVLEGSYVHICIEDNGLGM-DHNTLARLFDPF 322

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +   +  +            L 
Sbjct: 323 FTTKESGTGLGLAVSYRIIKNHGGFIHVDSKHGSGTQFKITLP 365


>gi|242373982|ref|ZP_04819556.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348336|gb|EES39938.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 565

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 59/226 (26%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    +  + +I   S    
Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLEMFLNIILKESNRIE 395

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +      D  Q       ++ + ++         
Sbjct: 396 SLVMDLLDLSHIEQQNEIETSYMNLSELAYNTIDNLQTQATNKNIEIKSEIEKDVIIEAH 455

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168
             + A+++ NL   A        KV + V     +    ++  G           F +  
Sbjct: 456 ENKVAQVITNLLSNAINYSLEDSKVIVRVYREGKKVNLEIQDFGIGISAKDQKHIFERFY 515

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+               
Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRISVSSKPGEGSTFKVT 561


>gi|229015977|ref|ZP_04172938.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273]
 gi|229022194|ref|ZP_04178744.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272]
 gi|228739125|gb|EEL89571.1| hypothetical protein bcere0029_5570 [Bacillus cereus AH1272]
 gi|228745337|gb|EEL95378.1| hypothetical protein bcere0030_5600 [Bacillus cereus AH1273]
          Length = 463

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 55/219 (25%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIR----------- 63
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +              
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +    +     V        +       +   ++++
Sbjct: 296 QMEKHNFFIHVQEVHLHPFLTRITEKVNAMYKERHVTVSFTCPPSLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +        ++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEDKHISIKIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|65318704|ref|ZP_00391663.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165870296|ref|ZP_02214951.1| sensor histidine kinase KinD [Bacillus anthracis str. A0488]
 gi|167639389|ref|ZP_02397661.1| sensor histidine kinase KinD [Bacillus anthracis str. A0193]
 gi|170686664|ref|ZP_02877884.1| sensor histidine kinase KinD [Bacillus anthracis str. A0465]
 gi|170706220|ref|ZP_02896681.1| sensor histidine kinase KinD [Bacillus anthracis str. A0389]
 gi|177651466|ref|ZP_02934255.1| sensor histidine kinase KinD [Bacillus anthracis str. A0174]
 gi|190568131|ref|ZP_03021041.1| sensor histidine kinase KinD [Bacillus anthracis Tsiankovskii-I]
 gi|227815819|ref|YP_002815828.1| sensor histidine kinase KinD [Bacillus anthracis str. CDC 684]
 gi|229604753|ref|YP_002865847.1| sensor histidine kinase KinD [Bacillus anthracis str. A0248]
 gi|164713791|gb|EDR19313.1| sensor histidine kinase KinD [Bacillus anthracis str. A0488]
 gi|167512828|gb|EDR88202.1| sensor histidine kinase KinD [Bacillus anthracis str. A0193]
 gi|170128754|gb|EDS97620.1| sensor histidine kinase KinD [Bacillus anthracis str. A0389]
 gi|170669187|gb|EDT19930.1| sensor histidine kinase KinD [Bacillus anthracis str. A0465]
 gi|172082744|gb|EDT67807.1| sensor histidine kinase KinD [Bacillus anthracis str. A0174]
 gi|190560865|gb|EDV14840.1| sensor histidine kinase KinD [Bacillus anthracis Tsiankovskii-I]
 gi|227002499|gb|ACP12242.1| sensor histidine kinase KinD [Bacillus anthracis str. CDC 684]
 gi|229269161|gb|ACQ50798.1| sensor histidine kinase KinD [Bacillus anthracis str. A0248]
          Length = 480

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 255 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 314

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 315 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 374

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 375 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 433

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    + A + 
Sbjct: 434 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHAEIP 476


>gi|309789570|ref|ZP_07684151.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308228306|gb|EFO81953.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 463

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--RLSSM 58
           M+ ++   +    L   + + I HD+ +P+  +   LE L +  ++    +         
Sbjct: 224 MSADLARAIQ---LRHQMTADIAHDLRTPLTVLSGYLESLRDQILKPTPERFATLYAEVQ 280

Query: 59  SAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                +  +                    +              E           S   
Sbjct: 281 ILQRLVDDLHTLSLADAGELTLQRHPCPPAQILAHVAETYRHAAEQAGITISDTVASNLP 340

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
           E +       + L NL   A    P GG++ +  +   +  +  +  NG           
Sbjct: 341 EVVVDDERLCRALGNLVSNAIRHTPAGGQIELRAEQDGDHLLLQVCDNGEGIPTEHLPNI 400

Query: 164 FTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F ++   +          +    V  +   +   L  E            L 
Sbjct: 401 FERLYRADQARQQAGGSGLGLAIVRSIIEAHGGTLGVESAPGAGSRFWVRLP 452


>gi|322419734|ref|YP_004198957.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320126121|gb|ADW13681.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 555

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54
           K     + S  +VAL  + + + H++ SP+  I  + ++L     ++E            
Sbjct: 312 KMEAQLVQSAKMVALGVMAAGVAHELNSPMTVIIGTAQMLARDMRDEEDSDRNEALSDII 371

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R       +VD       +  +I+  I   +         ++ 
Sbjct: 372 NCGLRCKRIIQNLLTFSRQDQAPFSAVDLNAEAERVLDMIQYQINRSQIAIFEHFDRELP 431

Query: 111 LS----RERAKILLNLFMVAHASLPRGGKVT--------ISVQDSKNENIFSLKINGNLA 158
                  +  ++L N  + A  +L               +  +  +   + S+  NG   
Sbjct: 432 RISANGPQIQQVLTNFLINARDALTEMDGKEKVIEVSTSMRSEGGRRWAVLSVTDNGIGI 491

Query: 159 RFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE  ++I      S        +     + +A  +  R+  E         S +L 
Sbjct: 492 -APENVSKIFTPFYTSKEATKGTGLGLSVSLGIAESHHGRIEVESTLGQGSCFSLVLP 548


>gi|170288964|ref|YP_001739202.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
 gi|170176467|gb|ACB09519.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
          Length = 412

 Score =  124 bits (312), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 26/228 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM 67
           ++     + + H++ +P+ +IH   E L E  +E+       +++I   S      +  +
Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTRLINDL 243

Query: 68  --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAK 117
                            VD    +  + ++I+     +    +                +
Sbjct: 244 LDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVKGNKERLIQ 303

Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +LLNL   A            KV +   D+ +  +  +K  G      E  ++I +    
Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVKDTGPGI-PKESQSRIFEKFYR 362

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    +    V  +  ++  ++  E   +   V+   L K
Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPK 410


>gi|167634328|ref|ZP_02392649.1| sensor histidine kinase KinD [Bacillus anthracis str. A0442]
 gi|167530216|gb|EDR92942.1| sensor histidine kinase KinD [Bacillus anthracis str. A0442]
          Length = 480

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 255 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 314

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 315 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 374

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 375 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 433

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    + A + 
Sbjct: 434 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHAEIP 476


>gi|153004814|ref|YP_001379139.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028387|gb|ABS26155.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. Fw109-5]
          Length = 752

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 61/231 (26%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
               L AL  + + + H+I +P+ AI  +++ LD   +  +  + + +           +
Sbjct: 476 ERDRLAALGEMSAGLAHEIRNPLAAIKGAVQFLDPSKLPGDDREFLEIVIEEVNRLNGVV 535

Query: 68  RLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                Y+  +       D    L    ++++  +     V+++       ++ +  ++  
Sbjct: 536 TQFLDYSRPLKPALAPTDVNDVLERTFRLLQAEVPQSISVELALAEWLPRVNADAEQLKQ 595

Query: 121 NLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164
               +A  +                               +      + +G      E  
Sbjct: 596 VFLNLALNAFQAMPAGGRLVVSTRLTRDELAFWREGSRKADLVEVRFRDSGPGV-PEEAR 654

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
            +I      +      +       L   ++  +                L 
Sbjct: 655 DRIFVPFYTTKEKGTGLGLAICQRLVKAHQGTIQVRPAPAGEGAEFLVSLP 705


>gi|323700367|ref|ZP_08112279.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460299|gb|EGB16164.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 715

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 72/245 (29%), Gaps = 33/245 (13%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           K +   L  +  + AL  L   I HD  + +G I    E+++     D  ++        
Sbjct: 332 KRLEDQLRQAQKMEALGTLAGGIAHDFNNILGVILGYAEIIESGAEPDSGLERRIGEISR 391

Query: 60  AII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           A           L F R       ++     + +  +++   +  +  +   +  ++  +
Sbjct: 392 AGRRARDLVTQILNFSRQGPQERHAMTLTPLIKEALKLLRSSVPSNVGIVTRFETDRDQV 451

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISV----------------QDSKNENIFSLK 152
             +     +ILLNL   A  ++   G                        ++     ++ 
Sbjct: 452 MADATQMHQILLNLCGNAAHAMQETGGTMTITLADVHQDDPVLPPEDLGKAERFVRLTVA 511

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG     P+   ++ D    +    +   +    V  +   +   L  E          
Sbjct: 512 DNGPGI-DPDVAGRVFDPFFTTKKQGEGTGMGLAMVHGIVKRHDGYLELENRPGQGATFH 570

Query: 211 ALLEK 215
             L +
Sbjct: 571 VFLPR 575


>gi|223932686|ref|ZP_03624685.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus
           suis 89/1591]
 gi|223898656|gb|EEF65018.1| PAS/PAC sensor signal transduction histidine kinase [Streptococcus
           suis 89/1591]
          Length = 449

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRL 55
           ++           L  S + H++ +P+ ++ + LE LDE  + + V        +     
Sbjct: 198 DMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNR 257

Query: 56  SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   L   R+              +      L   +Q+          +   +   
Sbjct: 258 MMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQIS 317

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            I +  +     ++L N+   A    P GG +T S++ + ++ I S+   G      +  
Sbjct: 318 PIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLP 377

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D                 +       +  ++K  +  +    H    + +L 
Sbjct: 378 -RIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432


>gi|229020690|ref|ZP_04177418.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
 gi|229026905|ref|ZP_04183229.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228734408|gb|EEL85078.1| hypothetical protein bcere0029_51700 [Bacillus cereus AH1272]
 gi|228740605|gb|EEL90875.1| hypothetical protein bcere0030_51650 [Bacillus cereus AH1273]
          Length = 586

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54
                +          + + H++ +P+  + + LE L +   +D  +         +   
Sbjct: 347 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 404

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107
                    L+  +L       +   +   D    + D   + K   VS+       +  
Sbjct: 405 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKRSRF 464

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               + +  ++L N+   A    P GG VT  ++D       S+   G      E   +I
Sbjct: 465 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 523

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +    +       +   +   +  +  +     +   L 
Sbjct: 524 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 576


>gi|251795347|ref|YP_003010078.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247542973|gb|ACS99991.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 459

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 66/230 (28%), Gaps = 21/230 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               L +  L  L  + + I H+I +P+ +I   ++LL    ++    +  R+       
Sbjct: 228 EQTALQNDKLAMLGRIAAAIAHEIRNPLTSIRGFIQLLRPYLMQLGKEEYARIILTEIDR 287

Query: 63  RLKFMRLAFGYTGS-------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
               +      +               V  +I L + E ++ +     +  +        
Sbjct: 288 ANDIIFEFLNSSKPSAPMKKSVSINRLVQEVILLTESEALMRNCDIQLETYENERDLMVS 347

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKF 164
              ++  +++LN+   +  ++    +      D            +LK NG         
Sbjct: 348 IDVKQIKQVILNIVKNSIDAIESLQEARRGRIDLVVRSDGQFAEITLKDNGKGMDKATL- 406

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +      +       +   +   +  +  +         L 
Sbjct: 407 ARLFDPFFTTKEAGTGLGLSVSYRIIRNHGGSIRVDSTEGSGTSFVIYLP 456


>gi|251796139|ref|YP_003010870.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543765|gb|ACT00784.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 485

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 75/243 (30%), Gaps = 28/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I  +L   +    L S I HD+ +PI AI   +E + +     DE  Q    +   
Sbjct: 226 LKQSIDQSLQYEENRKQLLSHISHDLKTPISAIKGYVEGIMDGIANTDEKRQRYMETIYH 285

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
               +  +         +D      D + +           +  +  EK  +        
Sbjct: 286 KANDMDQLIDELFLFSKLDLHKVAFDYKTIDSVKYLEHYLEEQRFDLEKSGVQLSFEAPP 345

Query: 117 --------------KILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNL 157
                         ++L N+   +   + +       +VT+SV++  ++ + +++  G  
Sbjct: 346 GVQLLIAADPDKLGRVLTNILNNSEKYMGQLPESADKRVTVSVREKGSDVLVAVEDTGPG 405

Query: 158 ARFPE---KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +          +     +    V  +   +   +  E +         L
Sbjct: 406 IEKEDLPYIFDRFYRAEQSRNSETGGSGLGLAIVKQIIEGHGGTVWAENVAGGGARFCFL 465

Query: 213 LEK 215
           L +
Sbjct: 466 LPR 468


>gi|229010730|ref|ZP_04167927.1| hypothetical protein bmyco0001_11850 [Bacillus mycoides DSM 2048]
 gi|228750404|gb|EEM00233.1| hypothetical protein bmyco0001_11850 [Bacillus mycoides DSM 2048]
          Length = 465

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 240 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQLYFSVIEQEIER 299

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 300 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 359

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 360 KDHMKQVVLNITKNAIEAMASGDTLTIVVTNNEKHAHLQIIDTGKGI-PKHIQKHLFHPF 418

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +  +  ++    +   + 
Sbjct: 419 FTNKDTGTGLGLVICKRIVEMYNGHIFIDSKENKGTTVHIEIP 461


>gi|71907457|ref|YP_285044.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71847078|gb|AAZ46574.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 674

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 74/234 (31%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
           +       + +  L A+  L + + H+I +PI  I  +L++L +          + ++LI
Sbjct: 434 LKAAQSQLVMNEKLAAIGQLTAGVAHEINNPIAVIQGNLDVLRDVLGPQAEPVAQEIKLI 493

Query: 54  RLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104
                   + +  +      +   GY   V++   + D   ++   +          +  
Sbjct: 494 HDQVQRVRLIVAKLLQFARPQDYVGYLEPVETGQLIQDCLLLVRHLLNKGDIAIEQHIDS 553

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           T + +    E  ++++NLF+ A  ++P     +         D        +  +G    
Sbjct: 554 TRQILCNKNELQQVIINLFVNAIQAMPEGGVLKIAVEDWDQADMPLGIRLVVSDSGPGIS 613

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +                + +  +    L      ++  E   +     +  L
Sbjct: 614 EADLAQLFKPFFTAKKPGGNGLGLWVSQALVERYGGKISAESGPERGASFTVWL 667


>gi|317130355|ref|YP_004096637.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475303|gb|ADU31906.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 601

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 18/227 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEV----- 49
           + K I     S  L     L +   H+I +P+  I   + L    L E   E        
Sbjct: 372 LEKRIQ---QSEKLALVGELAAGAAHEIRNPLAVIDGFMSLMNASLSEKEKEKYYVPLLI 428

Query: 50  --MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             ++ I       ++  K    +F      D L  +  +    +   ++   V +     
Sbjct: 429 KELERINTIIEEMLLLTKPSAPSFKMAYIEDVLNDILPLICNGQPKNSISFDVDLQ-RTA 487

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                ++  ++L NL      +L   GK+ +  +   +     ++ NG      E    I
Sbjct: 488 LPIDQKQMKQVLHNLIRNGIEALNGDGKIALHSRIIGDHYQLFIEDNGPGI-PTELADTI 546

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D  + S  +   +    V  +   +  ++     +         L 
Sbjct: 547 FDPFLTSKENGTGLGLTIVQRIVENHNGKIELIDTEKQGTTFLITLP 593


>gi|222095067|ref|YP_002529127.1| sensor histidine kinase; sporulation kinase [Bacillus cereus Q1]
 gi|221239125|gb|ACM11835.1| sensor histidine kinase; possible sporulation kinase [Bacillus
           cereus Q1]
          Length = 498

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +    I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 494


>gi|218780008|ref|YP_002431326.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218761392|gb|ACL03858.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 630

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 59/233 (25%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
           A++    + S    ++  L + + H+I +P+ A+     ++    D  G     ++ +  
Sbjct: 393 AQSEIRLIQSEKQASVGKLAAGVAHEINNPLTAVLTFTHMILRRTDLPGEVRSDLETVAS 452

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
            +      +K +      +      + +  + Q     +    +     +          
Sbjct: 453 QTERVRKIVKSLLDFSRQSALTPESLDVNGLIQESVKLLENQALIKGVSLSFRGDDNLPL 512

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLARFPEK 163
            + +  +    L  +   +L                   + N     +   G      E 
Sbjct: 513 FTLDHNQCQSVLINMIINALDATPSGGKISIQTKRASLENANGVEIKISDTGTGI-ASEH 571

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ D    +        +       +   +   +            +  L 
Sbjct: 572 MDKLFDPFFTTKEVGKGTGLGLAVSAGIIQRHGGSISVNSTLGEGTAFTIWLP 624


>gi|138894461|ref|YP_001124914.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265974|gb|ABO66169.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 354

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 20/231 (8%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           ++  NL +M+ +     S + H+I SP+ +I      L             + +I    +
Sbjct: 118 DMAANLQAMEDMRQEFISNVSHEIGSPLTSIRGFARALKNENLSQEQRMHYLDIIETECV 177

Query: 59  SAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 + +                +  +D+ +    +    +          V      
Sbjct: 178 RLSKLSENLLRLAMLDSERYPLHPTSYRLDTQLQTLILHCEPQWAEKDVDMCAVMEKVSI 237

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                  +++ LNL   A    P+GG +T+ VQ    + I ++   G      +    F 
Sbjct: 238 TADEDLLSQVWLNLIHNAIKFTPKGGTITVQVQRRGEQAIVTISDTGPGIPKHDQPRIFE 297

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +           +       +   +   +  +         +  L 
Sbjct: 298 RFYKVDKSRHRAAGGSGLGLAIAKQIVDMHHGTISVQSEPGEGATFTVELP 348


>gi|23100906|ref|NP_694373.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22779140|dbj|BAC15407.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
          Length = 612

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 66/232 (28%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58
                +          S + H++ +P+  + + LE L +   E+       + + +  + 
Sbjct: 373 TEQQKMEQER--RDFVSNVSHELRTPLTTMKSYLEALSDGAWENKEIAPRFLDVTQKETN 430

Query: 59  SAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----E 107
             I  +  +                         + +    +   + + +          
Sbjct: 431 RMIRMVNDLLQLSKMDSDELPMHKQREEFTSYLYQVLDRYEMNKPESIHMEKNIPNTKAY 490

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                 +  ++L N+   A    P GGK+ + +   ++  + S++  G    + +    F
Sbjct: 491 VWMDRDKITQVLDNVITNAIKYSPDGGKIRVKLDIRRHYLLVSIQDQGMGIAYDKLDKIF 550

Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +    +       L   +  ++  +  +     +   L 
Sbjct: 551 ERFYRVDKARNRKLGGTGLGLAITKELVEAHHGQIWAQSSEGKGTTILFTLP 602


>gi|295707318|ref|YP_003600393.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM
           319]
 gi|294804977|gb|ADF42043.1| two-component sensor histidine kinase WalK [Bacillus megaterium DSM
           319]
          Length = 635

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+  + + L+ L      +  +    + + +  +   I  +  +     
Sbjct: 408 FVANVSHELRTPLTTMRSYLDALAEGAWQDKDLAPTFLNVTQTETERMIRLVNDLLQLSK 467

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
              +        ++ +     I    E  I            E I ++ ++    ++L N
Sbjct: 468 LDSQDYRFSRDPINFVKFYHYIIDRFEMTIEQGISFVRDLPNEAIYVAIDQDKITQVLDN 527

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A    P GG +T S+    +E + S+K  G           F +    +      +
Sbjct: 528 IISNAIKYSPEGGIITFSIAQHTHEIVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKL 587

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  +  +     +   L 
Sbjct: 588 GGTGLGLAIAKEIIEAHDGRIWADSQEGKGTTIYFTLP 625


>gi|302529717|ref|ZP_07282059.1| predicted protein [Streptomyces sp. AA4]
 gi|302438612|gb|EFL10428.1| predicted protein [Streptomyces sp. AA4]
          Length = 581

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 60/232 (25%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           MA+     L +      + S + H++ +P+  I   LE   +        +   +++   
Sbjct: 351 MARARE-ELENARKA--MVSDVAHELRTPLSTIRGWLEAAQDGISQLDDDLVASLLEEAV 407

Query: 55  LSSMSAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              +R+      +   L  L        +   V   V       
Sbjct: 408 HLQHIVDDLQDLALADAGALRVHPEPVDANTLLTHLAAAHAPRAEAAGVSLSVPPMENPA 467

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    + L NL   A    P GG VT++     NE  F +   G      +    F
Sbjct: 468 ITADPVRLRQALDNLVSNAIRHTPPGGSVTVTASRRDNEASFEVADTGTGIAPEDLPRVF 527

Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +       +    V  LA  +   +            +    
Sbjct: 528 DRFWRADPSRSRVSGGSGLGLAIVRKLAEAHGGAVTAASTPGKGTTFTLRFP 579


>gi|14193095|gb|AAK55818.1|AF219111_2 putative histidine kinase [Streptococcus pneumoniae]
          Length = 449

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L    
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSC 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T+ ++ ++++ I S+  +G      +   +I D        
Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|152975646|ref|YP_001375163.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152024398|gb|ABS22168.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 612

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 71/225 (31%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       + +   L+     
Sbjct: 369 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQGKYFDLMLSEIE 428

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KID 110
                  +F+ +A       +       ++ V+           +               
Sbjct: 429 RIESILHEFLSIAKTDIIPTEKKNLYSIMKNVVSLINTKAIMTNIQIEIISESKELVIEC 488

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GGK+ I ++ ++    I  L   G      E+  ++ +
Sbjct: 489 CENQLKQVFINILQNSIEAMPDGGKIFIHMKTNRINEVIIDLVDEGIGI-PEERIKRLGE 547

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      I       +  +++ R+           ++  L 
Sbjct: 548 PFYSTKEKGTGIGLMLSYKIIEQHQGRISIMSKVGVGTSVTIYLP 592


>gi|163846537|ref|YP_001634581.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|163667826|gb|ABY34192.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
          Length = 470

 Score =  124 bits (312), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 76/234 (32%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +       L S  L A+  L + + H+I +P+ A  NSL L+++       +   + + +
Sbjct: 231 LNAAQAQLLQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQ 290

Query: 55  LSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                    +  MR  +  +         +      L  +   +            +   
Sbjct: 291 QELGRIARIITRMRDFYRPSRGELSSTNVNALLRETLELVTTHLRHNHVAVHAHLANDLP 350

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARF 160
                + +  ++ LN+ + A  ++P GG++T+         ++      ++   G     
Sbjct: 351 AITAHADQLRQVFLNVILNACDAMPNGGELTVKSSLIAARPEAPAALAIAISDTGVGI-A 409

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    + +    +      +       +  ++  R+L +         + LL 
Sbjct: 410 PEHLPHLFEPFYTTKPHGTGLGLAISAHIVTQHGGRILVDSQPGSGTTFTILLP 463


>gi|254740391|ref|ZP_05198082.1| sensor histidine kinase KinD [Bacillus anthracis str. Kruger B]
          Length = 498

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    + A + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHAEIP 494


>gi|30261434|ref|NP_843811.1| sensor histidine kinase KinD [Bacillus anthracis str. Ames]
 gi|47526623|ref|YP_017972.1| sensor histidine kinase KinD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49184269|ref|YP_027521.1| sensor histidine kinase KinD [Bacillus anthracis str. Sterne]
 gi|254682503|ref|ZP_05146364.1| sensor histidine kinase KinD [Bacillus anthracis str. CNEVA-9066]
 gi|254733919|ref|ZP_05191633.1| sensor histidine kinase KinD [Bacillus anthracis str. Western North
           America USA6153]
 gi|254753781|ref|ZP_05205816.1| sensor histidine kinase KinD [Bacillus anthracis str. Vollum]
 gi|254758878|ref|ZP_05210905.1| sensor histidine kinase KinD [Bacillus anthracis str. Australia 94]
 gi|30255288|gb|AAP25297.1| sensor histidine kinase KinD [Bacillus anthracis str. Ames]
 gi|47501771|gb|AAT30447.1| sensor histidine kinase KinD [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49178196|gb|AAT53572.1| sensor histidine kinase KinD [Bacillus anthracis str. Sterne]
          Length = 498

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIKR 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T +++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTATIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV  ++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTISVTSNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       L  + I++    + A + 
Sbjct: 452 FTNKDTGTGLGLVICKRIVEMYNGHLFIDSIENEGTTVHAEIP 494


>gi|331266319|ref|YP_004325949.1| signal transduction histidine kinase [Streptococcus oralis Uo5]
 gi|326682991|emb|CBZ00608.1| signal transduction histidine kinase [Streptococcus oralis Uo5]
          Length = 449

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + D V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117
           +    +     LI        I +     +                 +      + +  +
Sbjct: 271 IDNTTSQLDVELINFTAFITFILNRFDKMRSQDEEKKYELVRDYPINSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172
           ++ N+   A    P GGK+T+S++ + ++ I S+K  G      +    F +        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|294501967|ref|YP_003565667.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM
           B1551]
 gi|294351904|gb|ADE72233.1| two-component sensor histidine kinase WalK [Bacillus megaterium QM
           B1551]
          Length = 635

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+  + + L+ L      +  +    + + +  +   I  +  +     
Sbjct: 408 FVANVSHELRTPLTTMRSYLDALAEGAWQDKDLAPTFLNVTQTETERMIRLVNDLLQLSK 467

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
              +        ++ +     I    E  I            E I ++ ++    ++L N
Sbjct: 468 LDSQDYRFSRDPINFVKFYHYIIDRFEMTIEQGISFVRDLPNEAIYVAIDQDKITQVLDN 527

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A    P GG +T S+    +E + S+K  G           F +    +      +
Sbjct: 528 IISNAIKYSPEGGTITFSIAQHTHEIVVSIKDQGMGIPKSNLAKIFERFYRVDKARTRKL 587

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  +  +     +   L 
Sbjct: 588 GGTGLGLAIAKEIIEAHDGRIWADSQEGKGTTIYFTLP 625


>gi|293365511|ref|ZP_06612220.1| sensor histidine kinase [Streptococcus oralis ATCC 35037]
 gi|307703469|ref|ZP_07640411.1| two-component sensor histidine kinase [Streptococcus oralis ATCC
           35037]
 gi|315613221|ref|ZP_07888131.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296]
 gi|291315879|gb|EFE56323.1| sensor histidine kinase [Streptococcus oralis ATCC 35037]
 gi|307622876|gb|EFO01871.1| two-component sensor histidine kinase [Streptococcus oralis ATCC
           35037]
 gi|315314783|gb|EFU62825.1| sensor histidine kinase VicK [Streptococcus sanguinis ATCC 49296]
          Length = 449

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + D V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117
           +    +     LI        I +     +                 +      + +  +
Sbjct: 271 IDNTTSQLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172
           ++ N+   A    P GGK+T+S++ + ++ I S+K  G      +    F +        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|220911752|ref|YP_002487061.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219858630|gb|ACL38972.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 551

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 57/219 (26%), Gaps = 18/219 (8%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-------- 63
           L A     S + H+  +P+ +I   +E+L     E+   +++ +   ++           
Sbjct: 332 LAAKDDFVSSVSHEFRTPLTSILGYVEILLADEPEESQEEMLEIIRRNSERLLTLVSDLL 391

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 + ++       + +               V    +     E        +++L 
Sbjct: 392 ASRNGQLIVSPHTVDVAELVRTSVSSALPKATASGVVLAAETPDQLEAHVDGARISQVLD 451

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----ST 175
           NL   A    P GG V +S+          +   G      +                + 
Sbjct: 452 NLVSNAIKYSPDGGNVLVSLARDDGHLECRVTDTGMGMTPEDASEVFAKFFRTSNVRRTA 511

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    +       +   +   +  +         +  + 
Sbjct: 512 IPGVGLGLPISKAIVEAHGGTISVDSTLGQGTTFTFRVP 550


>gi|153004892|ref|YP_001379217.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028465|gb|ABS26233.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 927

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 67/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLVA-------------LLCSRICHDIISPIGAIHNSLELLDEVG---- 44
            K+     +S +L A                S + H++ +P+ +I    E+L +      
Sbjct: 659 QKSRALETASAELRAANAQLQELDRMKDEFMSSVTHELRTPLTSIRAFSEILRDDPKAPI 718

Query: 45  -IEDEVMQLIRLSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIA 95
                 + +I   S      +  +             +   +D    + D  +       
Sbjct: 719 AERVRFLAIIVKESERLTRLIDQLLDMAKIESGNAEWHAAELDVREAIQDSVEATSQLFR 778

Query: 96  ---VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
              V+  V +              ++++NL   A    PRGG+V + +  +       ++
Sbjct: 779 DSGVELAVALQPAPRVRADRDRLVQVIMNLLSNAVKFCPRGGRVEVRLAPAPEGVRVDVQ 838

Query: 153 INGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +G      ++                      +       +      RL  E       
Sbjct: 839 DDGPGISPADQDIIFEKFRQVSDTLTGKPRGTGLGLPISRRIVEHFGGRLWVESELGRGA 898

Query: 208 VLSALLE 214
             S +L 
Sbjct: 899 TFSFVLP 905


>gi|239616420|ref|YP_002939742.1| multi-sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505251|gb|ACR78738.1| multi-sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 899

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 73/228 (32%), Gaps = 19/228 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K + F      + AL  + +++ H+I +PI  I      +      +++ Q + + + 
Sbjct: 662 LEKELRFR---EKMAALGEMSAKVAHEIRNPITIISGFTRRIARTRDREKIQQYVEILNR 718

Query: 59  SAIIRLKFMRLAFGYTGS------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                   +     Y+              ++    + +  + +     +   V+     
Sbjct: 719 ELERLETIVNDVLDYSRRAKKKENIESVNALELCQEIANGFKDLAKKKGISLIVEGDEET 778

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +       ++++NL   A  +    G V I V+ ++     S+   G     PE   +
Sbjct: 779 VFVGNKNRMKQVIINLVQNAIEASEDNGIVKIEVEFAQENVRISVWNKGKEI-PPEILRR 837

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +      +       +  E+   +  +  D +  +    L 
Sbjct: 838 VFEPFFTTKTFGTGLGLSICKRIVEEHGGNITAQS-DSNGTIFVVSLP 884


>gi|307264990|ref|ZP_07546551.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919975|gb|EFN50188.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 66/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLS 56
           MA+ +       ++     S I H++ +P+ +I        +L+++     E + +I   
Sbjct: 229 MAEELG---QLEEMKNEFISNISHELKTPLTSIKGFAITAMDLVEKNSELYEYLNIIDEE 285

Query: 57  SMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104
           +      +  +                 V+    + D   ++    + D       +   
Sbjct: 286 TDRLSRLVDELLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNDGVNLICKKKID 345

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++L+N+      +  RG  V + +     + +  ++  G      E  
Sbjct: 346 RVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAVIRIEDQGQGIPQEEIK 405

Query: 165 TQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +      +       +  E+K  +  E       V +  L 
Sbjct: 406 YIFDKFYRGKNNKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELP 457


>gi|108759478|ref|YP_633915.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|78369894|gb|ABB43052.1| PilS2 [Myxococcus xanthus DK 1622]
 gi|108463358|gb|ABF88543.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 373

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 78/227 (34%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           +A+     ++S  +  +  L + + H++ +P+  I   + L     +     + ++ I  
Sbjct: 146 LARTQTELVASERMATVGRLAAGVAHEVGNPLAGILGYVALARVKADTPELKDFLERIDH 205

Query: 56  SSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEK 108
                   ++ +    R      G V+    +    +++        V   + +      
Sbjct: 206 EVQRIDRIIRGLLDLGRPGVTSLGPVEVGPVVETCVRLVRASPELSGVTVTLDLEPGALA 265

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +   ++I++NL + A  ++   G+V ++ + +  E    ++ +G      +   ++ 
Sbjct: 266 RTDAGPLSQIVINLLLNAAQAMGGQGRVRVATRQAAGEVRLLVEDDGTGI-PEDVMPRLF 324

Query: 169 DGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +   +   +       LA     RL  E I       +  L 
Sbjct: 325 EPFFTTKGREGTGLGLAVSQRLAQVMGGRLEAENIPSGGARFTVCLP 371


>gi|150016898|ref|YP_001309152.1| osmosensitive K+ channel signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903363|gb|ABR34196.1| osmosensitive K+ channel signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 861

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            K     + S  L + L   I HD+ SP+  I  ++                ELL  +  
Sbjct: 620 QKKSNLEIESERLRSNLLRSISHDLRSPLAGIKGAVSTIIETGNLISEETKGELLQGIYD 679

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + E +  +  + +S                 V+ ++                +       
Sbjct: 680 DTEWLIRLVENLLSMTRFDGGNLKVRKSIEIVEEVVYEAVQRTAKRFRDYKMEVTVPEEV 739

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L+NLF  A    P+G  + + + ++    IF +  NG          
Sbjct: 740 IMVPMDGSLIEQVLINLFDNAVKFTPKGSLIEVKIYENNKNVIFEVIDNGMGISEEILPH 799

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +  +     +       +   +   +     D+   V    + K
Sbjct: 800 IFERFFTNGDKISDSRRGVGLGLAICKSIVEAHGGTISAHNKDEGGAVFRFNIPK 854


>gi|241895844|ref|ZP_04783140.1| histidine protein kinase; sensor protein [Weissella
           paramesenteroides ATCC 33313]
 gi|241870887|gb|EER74638.1| histidine protein kinase; sensor protein [Weissella
           paramesenteroides ATCC 33313]
          Length = 627

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 67/225 (29%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLA 70
              S + H++ +P+ ++ + ++ L +  +ED  +           ++    +    + L+
Sbjct: 383 QFVSNVSHELRTPLTSVKSYVDALQDGAVEDPEVAHNFLQVAQDETTRMIHMINDLLELS 442

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------- 116
              +G++       +I  +    +     +  +    +   + +R               
Sbjct: 443 RMDSGTMKLEKEYINIAALFNYILDRFDMIIANDDKPEKYYTIKRMIPQLQIWVEIDTSK 502

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             +++ N+   A    P GG +T  ++D  +E + S+   G                   
Sbjct: 503 FTQVIDNIMNNAIKYSPDGGVITARLEDRDSEVVLSITDQGLGIPKSNMKQIFDRFFRVD 562

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +      R+  E  +      S  L 
Sbjct: 563 KARSRAQGGTGLGLAISKEIIERFNGRVWVESTEGEGSTFSIALP 607


>gi|118580923|ref|YP_902173.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503633|gb|ABL00116.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 543

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 67/226 (29%), Gaps = 22/226 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63
            S  L  L  L +R+ H+I +P+ A+  S++LL +       +  ++ +I   +      
Sbjct: 318 RSDKLAVLGSLAARMAHEIRNPLAAMSGSVQLLADHGTVAENDQRLLAIILRETDRLNAL 377

Query: 64  LKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +                         +  +      F  +    QV           +  
Sbjct: 378 ITSFLTYARPVSPHKERISLGGLIDEVRLLVSSDRRFGGITLTAQVPERMTISADQNQLR 437

Query: 117 KILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           ++L+NL   A  ++P                   ++   + ++  +G+     E    + 
Sbjct: 438 QVLINLLNNAAEAMPEGGRVEISAHLASPEDGDRAEQRAVITVSDSGSGI-TDEVAAHLF 496

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +  D   +       +  E+   +  E        ++  L 
Sbjct: 497 EPFWTTKSDGCGLGLAITYRIIEEHGGTITAESPPWGGCRITISLP 542


>gi|307719098|ref|YP_003874630.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
 gi|306532823|gb|ADN02357.1| two-component system, sensor histidine kinase [Spirochaeta
           thermophila DSM 6192]
          Length = 776

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 61/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     + S+   +   + + H+I +P+  I    ELL++  +++E    ++    S 
Sbjct: 116 LRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRLDEEQRDYVQQIRFSG 175

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 M +       V          Q  +  + V   +    
Sbjct: 176 EALLALINDILDYSKIEAGKLPMEIIEFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEV 235

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
             +         +IL+NL   A     +G          +        F+++  G     
Sbjct: 236 PRKVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQERKGVAWVAFTVEDTGIGIPE 295

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +K       +              +       L    K  +     +        LL 
Sbjct: 296 NKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSKEGEGSSFWFLLP 354


>gi|229195630|ref|ZP_04322396.1| hypothetical protein bcere0001_11970 [Bacillus cereus m1293]
 gi|228587879|gb|EEK45931.1| hypothetical protein bcere0001_11970 [Bacillus cereus m1293]
          Length = 486

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +    I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 482


>gi|309804859|ref|ZP_07698921.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
 gi|308165798|gb|EFO68019.1| PAS domain S-box protein [Lactobacillus iners LactinV 09V1-c]
          Length = 593

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L++   ++     + + +I+  
Sbjct: 349 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 401

Query: 57  SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   I  +                 +            L     + +         +R+ 
Sbjct: 402 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 461

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     + +  +++ N+   A    P GG +TI +  +    I S+   G      
Sbjct: 462 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSVSDQGLGIPRK 521

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D                 +       +   +  ++  +  + +       + 
Sbjct: 522 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 579


>gi|149908794|ref|ZP_01897454.1| putative sensor histidine kinase [Moritella sp. PE36]
 gi|149808068|gb|EDM68009.1| putative sensor histidine kinase [Moritella sp. PE36]
          Length = 681

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 69/235 (29%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + S  L AL  L + I H+I +P   I  ++ELL     D+     E ++ I
Sbjct: 431 LNQTRSKLVMSEKLAALGELTAGIAHEINNPTAVILGNVELLQLELGDDSQRVSEELEAI 490

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSW 104
                      + +       G  D +        V E             V  + Q+  
Sbjct: 491 HEQIDRIRNITRSLLQYSRQGGVQDEITWQHLNLIVKESLTLVSSGTKSANVQIKSQLDA 550

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIFSLKINGNLA 158
                    +  ++L+NL M    ++          +   +  D+    +  +  +G   
Sbjct: 551 KCCVEVNRHQLLQVLVNLQMNGVHAMDDKGLLKIKTEDWRNDDDNVIGAVVHISDHGCGI 610

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +   +I D    +      +       +  E   ++  +         S  L
Sbjct: 611 -SEDNLARIFDPFFTTRRSGTGLGLSVSQSIISEVGGKITVQSELGIGSTFSIYL 664


>gi|146319012|ref|YP_001198724.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33]
 gi|146321222|ref|YP_001200933.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33]
 gi|253752079|ref|YP_003025220.1| sensor histidine kinase [Streptococcus suis SC84]
 gi|253753904|ref|YP_003027045.1| sensor histidine kinase [Streptococcus suis P1/7]
 gi|253755221|ref|YP_003028361.1| sensor histidine kinase [Streptococcus suis BM407]
 gi|145689818|gb|ABP90324.1| Signal transduction histidine kinase [Streptococcus suis 05ZYH33]
 gi|145692028|gb|ABP92533.1| Signal transduction histidine kinase [Streptococcus suis 98HAH33]
 gi|251816368|emb|CAZ51999.1| sensor histidine kinase [Streptococcus suis SC84]
 gi|251817685|emb|CAZ55433.1| sensor histidine kinase [Streptococcus suis BM407]
 gi|251820150|emb|CAR46487.1| sensor histidine kinase [Streptococcus suis P1/7]
 gi|292558662|gb|ADE31663.1| Pas [Streptococcus suis GZ1]
 gi|319758446|gb|ADV70388.1| Signal transduction histidine kinase [Streptococcus suis JS14]
          Length = 449

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRL 55
           ++           L  S + H++ +P+ ++ + LE LDE  + + V        +     
Sbjct: 198 DMTEQAKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALTESVAPSFVKVSLDETNR 257

Query: 56  SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   L   R+              +      L   +Q+          +   +   
Sbjct: 258 MMRMITDLLSLSRIDNQVGQIDVELINFTAFVTFILNRFDQMKNADSDKVYTIVRDYQIS 317

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            I +  +     ++L N+   A    P GG +T S++ + ++ I S+   G      +  
Sbjct: 318 PIWVEIDTDKMTQVLDNILNNAIKYSPDGGTITFSMKTTDSQLIVSVSDEGLGIPKADLP 377

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D                 +       +  ++K  +  +    H    + +L 
Sbjct: 378 -RIFDRFYRVDKARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGHGSTFTIVLP 432


>gi|323442919|gb|EGB00542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus O46]
          Length = 546

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542


>gi|323440764|gb|EGA98473.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus O11]
          Length = 546

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542


>gi|312830070|emb|CBX34912.1| sensory box protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|329727161|gb|EGG63617.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21172]
 gi|329733268|gb|EGG69605.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21193]
          Length = 546

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542


>gi|302333357|gb|ADL23550.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|298694962|gb|ADI98184.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDPQSLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|294848713|ref|ZP_06789459.1| two-component system [Staphylococcus aureus A9754]
 gi|294824739|gb|EFG41162.1| two-component system [Staphylococcus aureus A9754]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|283470959|emb|CAQ50170.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus ST398]
          Length = 546

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542


>gi|282927822|ref|ZP_06335433.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A10102]
 gi|282590332|gb|EFB95411.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A10102]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|269941172|emb|CBI49559.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302751518|gb|ADL65695.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           aureus subsp. aureus str. JKD6008]
 gi|329314364|gb|AEB88777.1| Sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329728409|gb|EGG64846.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 546

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 318 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 377

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 378 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 437

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 438 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 496

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 497 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 542


>gi|258424108|ref|ZP_05686990.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9635]
 gi|257845729|gb|EEV69761.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9635]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|193216009|ref|YP_001997208.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
 gi|193089486|gb|ACF14761.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
          Length = 1544

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 28/239 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59
            +        M+ + LL S I HD+ + +  I  S+ELL    +     E +Q I  S+  
Sbjct: 1163 QEQILRAQRMESIGLLASGIAHDMNNILTPIMMSMELLKEIVDDEEGFERIQTINKSTRR 1222

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------S 112
            A   ++ +             + L  +   + +F+       +  +              
Sbjct: 1223 AKNLIQQLLAFARGKSEQQIPVNLRRLILELTNFMKETFPRSIQLSVNIPKNLPFILGDP 1282

Query: 113  RERAKILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSLKINGNL 157
             +  ++L+NL + AH ++P GG+++                    + N     +K  G  
Sbjct: 1283 TQIHQVLMNLCVNAHDAMPDGGQLSISSEKISLSEAETKLHIDAKAGNYIKVIVKDTGTG 1342

Query: 158  ARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +       + H +   +  +  +           
Sbjct: 1343 I-PNEHLHKIFEPFFTTKQQGKGSGLGLAMTYTIVHNHGGFITVDSEERKGTAFEIYFP 1400


>gi|160895407|ref|ZP_02076176.1| hypothetical protein CLOL250_02964 [Clostridium sp. L2-50]
 gi|156862909|gb|EDO56340.1| hypothetical protein CLOL250_02964 [Clostridium sp. L2-50]
          Length = 533

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +++   +   +    L S I HD+ +PI  I   +E L +        +D  +++I  
Sbjct: 282 LNESVELKMQYEEENRELISNISHDLKTPITTIKGYVEGLMDGVADTPEKQDRYLKMIYN 341

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            +      +  + L    T +           +   +    + R  +      +  +   
Sbjct: 342 KANELDALINELSLYTNITNNAIPYEFHRVSVKDYFNDCMEEVRADLLSHNMTLTYNNYC 401

Query: 116 -------------AKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                         +++ N+   A     +    + IS+++S+     S+  +G      
Sbjct: 402 AEDVKVVVDPDQLKRVINNVVTNAIKYTDKEEGHIDISIEESEKMIKVSINDDGRGIDKE 461

Query: 162 EKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +     +       +  E+  ++           +   L+K
Sbjct: 462 SLPHIFDRTYRADNARRSRGGSGLGLAICKKIVEEHGGKIWATSTKGEGTTIYFTLKK 519


>gi|87160006|ref|YP_494333.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195499|ref|YP_500303.1| histidine kinase [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|87125980|gb|ABD20494.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203057|gb|ABD30867.1| Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase domain
           protein [Staphylococcus aureus subsp. aureus NCTC 8325]
          Length = 553

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 325 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 384

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 385 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 444

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 445 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 503

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 504 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 549


>gi|57650563|ref|YP_186576.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus COL]
 gi|151221797|ref|YP_001332619.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161509906|ref|YP_001575565.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221142558|ref|ZP_03567051.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|258451794|ref|ZP_05699816.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948]
 gi|262048662|ref|ZP_06021545.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus D30]
 gi|262052263|ref|ZP_06024468.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus 930918-3]
 gi|282920232|ref|ZP_06327957.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A9765]
 gi|284024740|ref|ZP_06379138.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus 132]
 gi|304380717|ref|ZP_07363386.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|57284749|gb|AAW36843.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus COL]
 gi|150374597|dbj|BAF67857.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|160368715|gb|ABX29686.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860506|gb|EEV83332.1| sensory box histidine kinase PhoR [Staphylococcus aureus A5948]
 gi|259159864|gb|EEW44903.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus 930918-3]
 gi|259163309|gb|EEW47868.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus D30]
 gi|282594580|gb|EFB99565.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A9765]
 gi|304340716|gb|EFM06647.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC BAA-39]
 gi|315198611|gb|EFU28939.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140429|gb|EFW32283.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143968|gb|EFW35737.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|82751280|ref|YP_417021.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus RF122]
 gi|82656811|emb|CAI81240.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus RF122]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|49486518|ref|YP_043739.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|49244961|emb|CAG43422.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MSSA476]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|152976970|ref|YP_001376487.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152025722|gb|ABS23492.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 585

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIRLKFM------- 67
           + + H++ +PI +I    E L +  +      +  + +I   S      ++ +       
Sbjct: 366 ANVSHELKTPITSIKGFSETLLDGAMKNQKFCEHFLHIILKESERMQDLIEDLLDLSKIE 425

Query: 68  -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123
            +      G+VD    L DI+ V++      + V      + + +  +     +I +NL 
Sbjct: 426 QQGFKLNMGNVDIKDLLEDIKMVLDKKAQDKEIVLQMDAMQHVSVIGDSSRLKQIFINLV 485

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG V++S+ + +      +   G      E   +I +              
Sbjct: 486 HNAIIYTPVGGTVSVSLFEDEQNAYVQVADTGIGISKEEIP-RIFERFYRVDKARSRNTG 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  E       + +  L K
Sbjct: 545 GTGLGLSIVKHLVEAHHGMITVESKVGEGTMFTVALPK 582


>gi|134299370|ref|YP_001112866.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134052070|gb|ABO50041.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 575

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 72/220 (32%), Gaps = 15/220 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF- 66
            S  L+AL  L + + H++ +PIG I   +EL+ +   +   +     +    + R    
Sbjct: 339 QSEHLIALGRLATGVAHELRNPIGIIKTLVELMKDEYSQVSGIDEFTKAVDEQVDRQNMV 398

Query: 67  ------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRER 115
                        +    S+  L          +   + V V         + +  + + 
Sbjct: 399 IQELLDFGRPTKVSIKECSVNDLLKGVLSFSAAMLRKENVTVHLHLDESLPKIMADTEKL 458

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ +NL + A  ++P GG + I  + S+N    +    G      EK  +I D    + 
Sbjct: 459 KQVFVNLIVNAAEAMPSGGTLDIKTEQSENLVTVTFSDTGEGIDLEEKS-KIFDPFYTTK 517

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +           ++  +      +     +  L +
Sbjct: 518 KAGTGLGLSISYQNIKLHEGTIEVSSTRNKGTTFTIRLPR 557


>gi|15924682|ref|NP_372216.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927270|ref|NP_374803.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|21283365|ref|NP_646453.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|148268172|ref|YP_001247115.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394239|ref|YP_001316914.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156980009|ref|YP_001442268.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253317164|ref|ZP_04840377.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253732343|ref|ZP_04866508.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253734524|ref|ZP_04868689.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006476|ref|ZP_05145077.2| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257794077|ref|ZP_05643056.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9781]
 gi|258415781|ref|ZP_05682052.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9763]
 gi|258421982|ref|ZP_05684902.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9719]
 gi|258438260|ref|ZP_05689544.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A9299]
 gi|258443718|ref|ZP_05692057.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A8115]
 gi|258445929|ref|ZP_05694105.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6300]
 gi|258448390|ref|ZP_05696507.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6224]
 gi|258454129|ref|ZP_05702100.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A5937]
 gi|269203310|ref|YP_003282579.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893187|ref|ZP_06301421.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A8117]
 gi|295406002|ref|ZP_06815810.1| two-component system [Staphylococcus aureus A8819]
 gi|296274881|ref|ZP_06857388.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207595|ref|ZP_06924030.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297245072|ref|ZP_06928949.1| two-component system [Staphylococcus aureus A8796]
 gi|300911676|ref|ZP_07129120.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|13701488|dbj|BAB42782.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247464|dbj|BAB57854.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|21204805|dbj|BAB95501.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MW2]
 gi|147741241|gb|ABQ49539.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946691|gb|ABR52627.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156722144|dbj|BAF78561.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|253723865|gb|EES92594.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253727465|gb|EES96194.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257788049|gb|EEV26389.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9781]
 gi|257839374|gb|EEV63847.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9763]
 gi|257842026|gb|EEV66455.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A9719]
 gi|257848304|gb|EEV72295.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A9299]
 gi|257851124|gb|EEV75067.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus A8115]
 gi|257855171|gb|EEV78110.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6300]
 gi|257858358|gb|EEV81243.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A6224]
 gi|257863581|gb|EEV86338.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus A5937]
 gi|262075600|gb|ACY11573.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282764505|gb|EFC04631.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus A8117]
 gi|285817375|gb|ADC37862.1| Phosphate regulon sensor protein PhoR [Staphylococcus aureus
           04-02981]
 gi|294968999|gb|EFG45020.1| two-component system [Staphylococcus aureus A8819]
 gi|296887612|gb|EFH26510.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus ATCC 51811]
 gi|297178152|gb|EFH37400.1| two-component system [Staphylococcus aureus A8796]
 gi|300887097|gb|EFK82298.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH70]
 gi|315130674|gb|EFT86660.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus CGS03]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +     +           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTDIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|328555723|gb|AEB26215.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens
           TA208]
 gi|328914109|gb|AEB65705.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens LL3]
          Length = 611

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 26/231 (11%)

Query: 10  SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAI 61
               L        + + H++ +P+  + + LE L E   E+       + + +  +   I
Sbjct: 369 EQEKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKEIAPRFLMVTQNETERMI 428

Query: 62  IRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +           +    +   +  +  + D  ++ ++      R           
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMTKEQHVEFIRELPDRNLYVEI 488

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK---FT 165
              +  ++L N+   A    P GG VT SV  ++ E     S+K  G      +    F 
Sbjct: 489 DQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVFD 548

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +    +       +   +   +  + ++     ++  L 
Sbjct: 549 RFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599


>gi|308175749|ref|YP_003922454.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM
           7]
 gi|307608613|emb|CBI44984.1| sensory box histidine kinase WalK [Bacillus amyloliquefaciens DSM
           7]
          Length = 611

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 26/231 (11%)

Query: 10  SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAI 61
               L        + + H++ +P+  + + LE L E   E+       + + +  +   I
Sbjct: 369 EQEKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKEIAPRFLMVTQNETERMI 428

Query: 62  IRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +           +    +   +  +  + D  ++ ++      R           
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMTKEQHVEFIRELPDRNLYVEI 488

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK---FT 165
              +  ++L N+   A    P GG VT SV  ++ E     S+K  G      +    F 
Sbjct: 489 DQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVFD 548

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +    +       +   +   +  + ++     ++  L 
Sbjct: 549 RFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599


>gi|306821071|ref|ZP_07454689.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550907|gb|EFM38880.1| sensor histidine kinase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 598

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           ++I  +    +L     + + H++ +PI +I +  E L     D+       + +I   S
Sbjct: 364 QDITESRRLEELRRDFVANVSHELKTPITSIKSYTETLLDGAIDDKDTATSFLTVINNES 423

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGL---------GDIEQVIEDFIAVDKRVQVSWTGEK 108
                 +K +          +S               I ++       ++++    + +K
Sbjct: 424 DRMNNIIKDLLQLSHMDYKKESWDLALTDINALTKDCILKMTLYADMKNQKIVGEISNDK 483

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
           + +  +     ++++NL   A       G + +    +  +   S+  +G      +   
Sbjct: 484 LPVIIDKSKFEQVIINLVSNAIKYTNDNGTIIVKTFVNDGKCHISVTDDGIGIPEKDLPF 543

Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +          ++    +       +  E+   +            + ++ 
Sbjct: 544 IFDRFYRVDKGRSRSLGGTGLGLSICESIIAEHGGTISVTSTFGEGSTFTVIIP 597


>gi|294496151|ref|YP_003542644.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667150|gb|ADE36999.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 732

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----------------- 44
           AK +    +     +   + + H++ +P+ +I    ++L E                   
Sbjct: 495 AKGMAEAANQTK--SQFLANMSHELRTPLNSIIGFSDVLLEEAFGKLNEKQKKYTHNINT 552

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
               ++ +I      + I    M L     G  + +  L +  + +     +   +  S 
Sbjct: 553 SGHHLLDIINDILDLSKIEAGKMELNPENFGLEEIISELKNTLEPLVKKKQLILDLDTSL 612

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                    +  ++L NL   A    P  GK+ I +   + E   S+  +G     PE+ 
Sbjct: 613 EYPVYADKLKIKQVLYNLLSNAIKFTPEKGKIAIDIDCGEEEITISVSDSGIGI-PPEEQ 671

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                   +    V  +   +  ++  E            L 
Sbjct: 672 DKLFQPFRQIDSDSNRQYQGTGLGLALVKNIIEMHGGQIWVESEAGKGSTFKFTLP 727


>gi|154688138|ref|YP_001423299.1| YycG [Bacillus amyloliquefaciens FZB42]
 gi|154353989|gb|ABS76068.1| YycG [Bacillus amyloliquefaciens FZB42]
          Length = 611

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 26/231 (11%)

Query: 10  SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAI 61
               L        + + H++ +P+  + + LE L E   E+       + + +  +   I
Sbjct: 369 EQEKLDRERREFVANVSHELRTPLTTMRSYLEALAEGAWENKDIAPRFLMVTQNETERMI 428

Query: 62  IRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +           +    +   +  +  + D  ++ ++      R           
Sbjct: 429 RLVNDLLQLSKFDSKDYQFNREWIHMIRFMSLIIDRFEMTKEQHVEFIRELPDRNLYVEI 488

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK---FT 165
              +  ++L N+   A    P GG VT SV  ++ E     S+K  G      +    F 
Sbjct: 489 DQDKVTQVLDNIISNALKYSPEGGHVTFSVDVNEKEELLYISVKDEGIGIPKKDVEKVFD 548

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +    +       +   +   +  + ++     ++  L 
Sbjct: 549 RFYRVDKARTRKLGGTGLGLAIAKEMVQAHGGDIWADSVEGKGTKITFTLP 599


>gi|331082842|ref|ZP_08331964.1| hypothetical protein HMPREF0992_00888 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400171|gb|EGG79820.1| hypothetical protein HMPREF0992_00888 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 245

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 14/223 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           + +   L       L  S + H+I +P+  I++ L+LL+    E +  +       +   
Sbjct: 21  RQLYEELQVQQQFTL--SHVSHEIRNPVTLINSFLQLLESHHPELKEDKYWGKIMENMDF 78

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEKIDL 111
               +     +  S    I   D+ +++E+  A       S+                  
Sbjct: 79  LKTLLNEFSSFNNSGKLNIQELDLSELLENLAASSLPTLESYNVSLVLNIEPNLPVIQAD 138

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             + ++++LNL   +  ++   G +  S+   +N  + S+K NG+          + +  
Sbjct: 139 KTKMSQLILNLLRNSSEAIKTEGIIHCSLTSQENYLVLSVKDNGSGIPVLY-QEDLFEPF 197

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +   +       +A  +   +  + + +     + LL 
Sbjct: 198 ITHKQEGTGLGLPICKRIAEAHNGSISFQSVPEKGTEFTVLLP 240


>gi|260587071|ref|ZP_05852984.1| putative sensor histidine kinase [Blautia hansenii DSM 20583]
 gi|260542561|gb|EEX23130.1| putative sensor histidine kinase [Blautia hansenii DSM 20583]
          Length = 265

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 14/223 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           + +   L       L  S + H+I +P+  I++ L+LL+    E +  +       +   
Sbjct: 41  RQLYEELQVQQQFTL--SHVSHEIRNPVTLINSFLQLLESHHPELKEDKYWGKIMENMDF 98

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEKIDL 111
               +     +  S    I   D+ +++E+  A       S+                  
Sbjct: 99  LKTLLNEFSSFNNSGKLNIQELDLSELLENLAASSLPTLESYNVSLVLNIEPNLPVIQAD 158

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             + ++++LNL   +  ++   G +  S+   +N  + S+K NG+          + +  
Sbjct: 159 KTKMSQLILNLLRNSSEAIKTEGIIHCSLTSQENYLVLSVKDNGSGIPVLY-QEDLFEPF 217

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +   +       +A  +   +  + + +     + LL 
Sbjct: 218 ITHKQEGTGLGLPICKRIAEAHNGSISFQSVPEKGTEFTVLLP 260


>gi|322435821|ref|YP_004218033.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321163548|gb|ADW69253.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 987

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 78/228 (34%), Gaps = 24/228 (10%)

Query: 10  SSMDLVA--LLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  L +  LL + + H++ +P+  I +  ++L     +      V++ I   +  A   
Sbjct: 743 QSEKLSSIGLLAAGVAHEVNTPLAVISSYTQMLSKQLRDDVRIAPVLEKITQQTFRASEI 802

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT-----GEKIDLSRER 115
           +  +      +G+    I L  + +   ++ +      R+++                + 
Sbjct: 803 VNGLLNFSRTSGAEFVSIDLNQLLRDSAILLEHQFKTARIRLDQELAPDLARIQGNQGKL 862

Query: 116 AKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            +++LNL + A  ++       +TI+ ++  ++ I  ++  G+     E   +I D    
Sbjct: 863 QQVILNLMLNAKDAMQGTSTGLITIATRNEHDQVILEIRDTGSGI-EREHLHRIFDPFFT 921

Query: 174 ST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +             +       +  E+  ++  +            + 
Sbjct: 922 TKTNPQPGQHKGTGLGLAVSYGILQEHGGKITVDSEPGQGTTFRLEIP 969


>gi|269839224|ref|YP_003323916.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
 gi|269790954|gb|ACZ43094.1| PAS/PAC sensor hybrid histidine kinase [Thermobaculum terrenum ATCC
            BAA-798]
          Length = 1363

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 27/238 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +     + +  L +   + + H+I +P+ AI    ELL +  + +   + ++    S+
Sbjct: 830  LRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQDTPLSERQREFVQTIQTSS 889

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSW 104
               L  +     ++      + L +++  +                   I++   V  + 
Sbjct: 890  QSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLMTFVDPTI 949

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARF 160
                I       ++LLNL   A     +G      +     DS+ E +F ++  G     
Sbjct: 950  PRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLLRVLPHRAADSEVELLFEVRDTGIGIDS 1009

Query: 161  PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 ++                   +       L       +  E            
Sbjct: 1010 AHLG-KLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGSTFRFT 1066


>gi|255009881|ref|ZP_05282007.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147668|ref|ZP_07809861.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136435|gb|EFR53795.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 409

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                +S+  L +   + + H+I +P+ AI     LL     + E    + + + +    
Sbjct: 179 EKENAVSAEKLKSAFIANMSHEIRTPLNAIIGFSGLLASTDDDAEKKMYLDIVAENNHRL 238

Query: 64  LKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGE 107
           L+ +                +    D    L  +  ++E  +     +++     +    
Sbjct: 239 LQIVTDVLDLSKIESGSLDFHYSRFDVNDLLCGLHGILEIRLKDKPDIKLVCEAGTDEWM 298

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +   +IL NL   A      G          + +  F +   G      E   +I
Sbjct: 299 IYSEQQRIVQILTNLVHNAIKFTQNGEIRFGCRPHGETDVYFYVSDTGIGIPVGE-QDKI 357

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D     +  +    +       +       +  E            L 
Sbjct: 358 FDRFTKLDHEVPGTGLGLTLSQTIVQSLGGEIGVESEVTKGSTFWFTLP 406


>gi|237726071|ref|ZP_04556552.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229435879|gb|EEO45956.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 807

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 54/228 (23%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     +  Q + +   +  
Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                      T        +    ++           +      
Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVPAGVELVFEKCLPECH 688

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ N    A      G       + +     F ++  G      +  T  
Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 748

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       L  +    +  E  +           
Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796


>gi|254505648|ref|ZP_05117794.1| sensor protein GacS [Vibrio parahaemolyticus 16]
 gi|219551301|gb|EED28280.1| sensor protein GacS [Vibrio parahaemolyticus 16]
          Length = 870

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     ++  + + H+I +P+  I    E+L +  +     +++     S+ 
Sbjct: 369 AKEHAEAANQAK--SVFLANMSHEIRTPLNGIIGMTEILSDSQLNGSQKEILNDIDASSH 426

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              + L+       + +    ++         V   V+ +    
Sbjct: 427 ALLVLINDILDLSKIESGNLVLSPHTANLREIIFDTMNMVNAQALKQEVTLEVEFADDVP 486

Query: 108 KI--DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +IL+NL   A      G  +     D+++     +   G      +   
Sbjct: 487 VYAEMDEFRVKQILMNLLSNAIKFSANGSVLVRHSVDTQHRLNIEVLDTGVGIAADKLSD 546

Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    G +        +       L    +  L+ E         + +L 
Sbjct: 547 IFKPFTQEDGTITRRFGGTGLGLAICRQLVELMRGELVVESNVGEGSRFTVILP 600


>gi|119716165|ref|YP_923130.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536826|gb|ABL81443.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 535

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           K++   + ++ +     + + H++ +P+ +I    ++L E           ++++  +S 
Sbjct: 301 KDVTDFMRALRVKDEFVASVSHELRTPLTSIVGYTQMLLERDDLPADVVAQLEVMARNSG 360

Query: 59  SAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGE 107
                +  +                 VD    + D  +              +++  T  
Sbjct: 361 RLHRLVADLLHTARLDEGGAPLVRAPVDLAAVVRDCVEAAAPAARRSGVELVLELPPTLV 420

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                   A+++ NL   A      GG V +++    +     +   G      ++    
Sbjct: 421 LRADQERLAQVVDNLVSNAVKYTSAGGCVQVTLLLDGDRAELCVADTGIGIAAADRDRLF 480

Query: 168 VDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +        +       +   +  R+  E       V    L 
Sbjct: 481 TRFFRARQAEERSIQGVGLGLSITKAIVESHGGRIEVESELGRGSVFRVRLP 532


>gi|149919249|ref|ZP_01907732.1| two-component hybrid sensor and regulator [Plesiocystis pacifica
           SIR-1]
 gi|149819963|gb|EDM79385.1| two-component hybrid sensor and regulator [Plesiocystis pacifica
           SIR-1]
          Length = 743

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 64/228 (28%), Gaps = 19/228 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
                    + AL  L S + HD  + +  I    ELL      +E       ++LI  +
Sbjct: 373 QAQLAQRDKMDALGLLASGVAHDFNNMLTGILGGAELLRATISPEEEEDALPFIELISDA 432

Query: 57  SMSAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +  +      +      +      VD    + +   ++   +    ++Q         + 
Sbjct: 433 AERSAELTAQLLSFSRKSHVELSPVDVHASVREAVALLRRSLDKRVQIQTRLDAAHATVI 492

Query: 113 RERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +R ++L  L  +   +             +      +    ++  G+     +   +I 
Sbjct: 493 GDRGRLLSALINLGVNASHAMHGGGKLTFSTRLREPTQLEIEVRDTGSGI-SEDNLARIF 551

Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +  +     +    V  +  ++   +  +            L 
Sbjct: 552 EPFFTTKKEGKGTGLGLAAVQGIIEQHGGSVAVDSELGVGTSFYLRLP 599


>gi|326390091|ref|ZP_08211653.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993956|gb|EGD52386.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 65/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLS 56
           MA+ +       ++     S I H++ +P+ +I        +L+++     E + +I   
Sbjct: 229 MAEELG---QLEEMKNEFISNISHELKTPLTSIKGFAITAMDLVEKNSELYEYLNIIDEE 285

Query: 57  SMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104
           +      +  +                 V+    + D   ++    +         +   
Sbjct: 286 TDRLSRLVDELLDFSKIELNKIKLSFEEVELDKLIEDTVAILRPHASNYGVNLICKKKID 345

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++L+N+      +  RG  V + +     + +  ++  G      E  
Sbjct: 346 RVVINGDVNRLKQVLVNIIDNGIKACSRGKYVKVFLDIKDKKAVIRIEDQGQGIPQEEIK 405

Query: 165 TQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +      +       +  E+K  +  E       V +  L 
Sbjct: 406 YIFDKFYRGKNNKYSGTGLGLAISKKIIEEHKGTITVESEVGKGSVFTIELP 457


>gi|317128714|ref|YP_004094996.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315473662|gb|ADU30265.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 483

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 51/217 (23%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + I H++ +P+ A+   LE L +      +   +   +           +          
Sbjct: 259 ANISHELRTPLTAMKGFLEALQDGLVKDTESQQKYYAIMYRETEYLNHLVNDLMDLIKLE 318

Query: 78  DSLIGLGDIE------------QVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNL 122
              I L                 +     + +  + +        +  +     +I  N+
Sbjct: 319 RQDISLDLYCVHLQEIIRKVALNLQPSIESRNNDIIIDAPDNIPPVIGDSIRLEQIFKNI 378

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TID 177
              A+     G       +  K+     +  NG      +    + +    +        
Sbjct: 379 IHNANKFTENGSITIKLEEHCKDNVCVKISDNGIGIPSYDVKRIWERFFKVDRVRQKKER 438

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  L   +   +  E         +    
Sbjct: 439 GTGLGLAIVKELVQLHHGEITVESELGVGTTFTIFFP 475


>gi|282924834|ref|ZP_06332500.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C101]
 gi|282313200|gb|EFB43596.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C101]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +    ++           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|49483934|ref|YP_041158.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257425807|ref|ZP_05602231.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257428473|ref|ZP_05604871.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257431107|ref|ZP_05607484.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433790|ref|ZP_05610148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436706|ref|ZP_05612750.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282904263|ref|ZP_06312151.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906088|ref|ZP_06313943.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909003|ref|ZP_06316821.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911319|ref|ZP_06319121.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914488|ref|ZP_06322274.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282919457|ref|ZP_06327192.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C427]
 gi|283958443|ref|ZP_06375894.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503566|ref|ZP_06667413.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510581|ref|ZP_06669286.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|293537123|ref|ZP_06671803.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|295428263|ref|ZP_06820892.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590774|ref|ZP_06949412.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus MN8]
 gi|49242063|emb|CAG40762.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|257271501|gb|EEV03647.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 55/2053]
 gi|257275314|gb|EEV06801.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 65-1322]
 gi|257278055|gb|EEV08703.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281883|gb|EEV12020.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257284057|gb|EEV14180.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M876]
 gi|282317267|gb|EFB47641.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C427]
 gi|282321669|gb|EFB51994.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M899]
 gi|282325014|gb|EFB55324.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327267|gb|EFB57562.1| phosphate regulon sensor kinase PhoR [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331380|gb|EFB60894.1| two-component system OmpR family phosphate regulon sensor histidine
           kinase PhoR [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282595881|gb|EFC00845.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus C160]
 gi|283790592|gb|EFC29409.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290919968|gb|EFD97036.1| sensory box histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095232|gb|EFE25497.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466472|gb|EFF08993.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus M809]
 gi|295127663|gb|EFG57300.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575660|gb|EFH94376.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus MN8]
 gi|312437850|gb|ADQ76921.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus aureus subsp. aureus TCH60]
          Length = 554

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +    ++           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVEAHQGNIEVNSQVGKGSTFKVILK 550


>gi|205373671|ref|ZP_03226474.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4]
          Length = 427

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K     + S  +  +  L + + H+I +P+ ++   ++L+          + ++     
Sbjct: 202 KKKEEMMIVSEKMSVIGQLAAAVAHEIRNPLTSLKGFVQLMQTSKEYNSNYLSIMFSEIE 261

Query: 59  SAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKI 109
              +    +  +        +      +     V+ +  A    + +        +   +
Sbjct: 262 RINLIAGEMLILGKQQDIRFAKKDSKEILKQVLVLMEAQANLNNIAIECVDETTASTNVL 321

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S +  ++ +N+   A  S+P  G++ I ++   ++ I  +  NG+     E+  ++ +
Sbjct: 322 CDSNQLKQVFINVIKNALESIPSNGRIYIRMKSLPHKVIIEIVDNGHGI-DQERLDRLGE 380

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   +   +           +  +L 
Sbjct: 381 PFYSTKEKGTGLGLAVSYSIIERHSGSIHITSEVGKGTKVDIILP 425


>gi|189424217|ref|YP_001951394.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189420476|gb|ACD94874.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 491

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 73/227 (32%), Gaps = 16/227 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSM 58
            + +   + S  L +L  + + + H++ +P+GAI+ S+  L++  G +   M++I+    
Sbjct: 256 KRAVTQLVQSEKLASLGKIVAGVAHEVNNPLGAINASIYNLEQKSGNQLRNMEIIKQGVE 315

Query: 59  SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                ++ +                              +    + +    + +      
Sbjct: 316 RIERIVRQLSDFSRTASLELQPLASEGFFSECAEFSRVALKRFDVELVTEDRCAPALMLQ 375

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++LLNL   A  + P  G + +S Q +       ++  G+    PE    + D
Sbjct: 376 LDKGKIQQVLLNLLFNAAQASPLRGIIRLSAQLTPGYYQLEVEDQGSGI-PPEAQRTVFD 434

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +   I       +   +   +          V +  L 
Sbjct: 435 IFYTTKHAGEGTGIGLAICKSIVEMHGGTITFSSRPGK-TVFTVSLP 480


>gi|115376273|ref|ZP_01463513.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366698|gb|EAU65693.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 564

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 70/227 (30%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57
           + +       +  L AL  L +++ H+I +P+ A+  S ++L  +   +  V++L  +  
Sbjct: 324 LRRAEDELRRADRLAALGTLAAQLAHEIRNPLAAMRGSAQMLAQDGAEDPSVVRLTNILL 383

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +    + +     +               L      +     + + V +S     +  
Sbjct: 384 RESDRLSRLVEEFLRFARPPPPQRRVAALDELIRETVEMLQADPLRRGVHLSLELRPVMA 443

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167
           S +  ++   L  +   +    G    +       ++ + + ++  +   A       +I
Sbjct: 444 SVDPDQLRQVLLNLLRNAFEAVGPEGRTRVSLSVSAEQKVLLAVWDS-AGAIPEAHLVRI 502

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +   ++ RL            +  L 
Sbjct: 503 FEPFFTTRSGGTGLGLATAYSIVRAHEGRLQVTSSPGSGTEFTVELP 549


>gi|56962996|ref|YP_174723.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909235|dbj|BAD63762.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 539

 Score =  124 bits (311), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 67/221 (30%), Gaps = 9/221 (4%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           +      ++  L     L + I H+I +P+ ++   ++L  +       +   ++  +  
Sbjct: 318 ETEEKLRTTEKLAVVGELAAGIAHEIRNPLTSLRGFVQLFQDESKENNPLHRIMLDELER 377

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            +  A   L   R         +    LGD+ Q++     ++         E + L  + 
Sbjct: 378 INTIASELLVLSRPQEVAFQRCNLRQVLGDVIQLMGTNSQLNGATLSLQAEEGLSLECDP 437

Query: 116 AKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++      V   +   G    +     S  +   +++ NG      ++  ++ +     
Sbjct: 438 NQLKQLFINVVKNAAESGASAIVVRAFPSGTQICVAVEDNGCGI-SADRIERLGEPFYSQ 496

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +       +   +   +  +        +   L K
Sbjct: 497 KERGTGLGLTISHKIVEAHHGAIQYKSELGTGTTVFIALPK 537


>gi|228984509|ref|ZP_04144686.1| hypothetical protein bthur0001_12140 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775212|gb|EEM23601.1| hypothetical protein bthur0001_12140 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 486

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDHPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TISV ++   +   +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTSGDTLTISVTNNATHSQLQIIDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +      ++    I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIVEMYNGQIFINSIENEGTTVHIEIP 482


>gi|319652787|ref|ZP_08006894.1| hypothetical protein HMPREF1013_03509 [Bacillus sp. 2_A_57_CT2]
 gi|317395514|gb|EFV76245.1| hypothetical protein HMPREF1013_03509 [Bacillus sp. 2_A_57_CT2]
          Length = 419

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 64/224 (28%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +       S  L     + + I H+I +P+ +I   ++L      +DE   ++      
Sbjct: 178 EEQEKLLQKSEKLALLGQMAAGIAHEIRNPLTSIKGFVQLFKSNSQKDEYFDIVLSELDR 237

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDL 111
               +    +    T  +     L  +   +    +    +                   
Sbjct: 238 INGIVGEFLVLAKPTADIFEKQDLTKLINEVILLSSTQSVLNNVEIAAENNLHAPMIHCE 297

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDG 170
             +  ++ LN+   A  ++P GG++ I V     N         G      ++ + + + 
Sbjct: 298 KNQLKQVFLNIIKNAIEAMPGGGELNIKVFKKSGNTISIQFIDQGVGI-SEDRISSLGEP 356

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   +  RL+ E        +   L 
Sbjct: 357 FYTTKEKGTGLGLMICYKIIENHNGRLIVESKVGEGTKIEIELP 400


>gi|302039538|ref|YP_003799860.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300607602|emb|CBK43935.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 465

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 71/236 (30%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVM 50
           +A      + +  L AL  L + + H++ +P+ AI  +L LL+E   E           +
Sbjct: 219 LALERRVRV-AEKLAALHTLSAGVAHELRNPLSAIDLNLHLLEEEFKEQGGPAKQAAYYL 277

Query: 51  QLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWT 105
           +++        +     +KF R       +VD    +  I  ++  +      +++   +
Sbjct: 278 RVLNAECRRLSVILDNFMKFARPGSMGLHAVDLPALIEHIVALMRFEAEERKIQLEQRVS 337

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLA 158
            +   +  +  +I   L  +   +             ++             +   G   
Sbjct: 338 KDMSPVLGDETQISQVLVNIVVNAFHAMPNGGRCSIATEERTEEGKRWVEIVVSDTGIGI 397

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   ++ +    +      +       +  ++   +    +  +   +     
Sbjct: 398 EQEDLP-RLFEPFYTTKSGGTGLGLAIAYRIMQDHSGTIHVTSVPGNGTQVVMQFP 452


>gi|326391595|ref|ZP_08213125.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992377|gb|EGD50839.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 456

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 68/223 (30%), Gaps = 24/223 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L    I++       + +I   S      +  
Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQTRDKFLDIIDFESERLTRLIND 284

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114
           +              T  ++    + DI  +++      +  ++                
Sbjct: 285 ILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVINTNKDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL        P GG V +S ++  ++ I  ++ NG      E   ++ +     
Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVEDNGIGI-SKENIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                  +    +    V  +    K  +  E           
Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFII 446


>gi|322376760|ref|ZP_08051253.1| sensory box histidine kinase VicK [Streptococcus sp. M334]
 gi|321282567|gb|EFX59574.1| sensory box histidine kinase VicK [Streptococcus sp. M334]
          Length = 449

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +Q+          +   +    + +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T++++ + ++ I S+   G      +   +I D        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|309800487|ref|ZP_07694641.1| sensor protein YycG [Streptococcus infantis SK1302]
 gi|308115882|gb|EFO53404.1| sensor protein YycG [Streptococcus infantis SK1302]
          Length = 449

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALTEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117
           +    +     LI        I +     +                 +      + +  +
Sbjct: 271 IDNETSHLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172
           ++ N+   A    P GGK+T+S++ + ++ I S+   G      +    F +        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSISDQGLGIPKQDLPKIFDRFYRVDRAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++K  +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|307704959|ref|ZP_07641847.1| two-component sensor histidine kinase [Streptococcus mitis SK597]
 gi|307621469|gb|EFO00518.1| two-component sensor histidine kinase [Streptococcus mitis SK597]
          Length = 449

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +Q+          +   +    + +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDQIRGQDEEKKYELVRDYPITSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T++++ + ++ I S+   G      +   +I D        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|261408910|ref|YP_003245151.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus sp. Y412MC10]
 gi|329927108|ref|ZP_08281464.1| putative sporulation kinase E [Paenibacillus sp. HGF5]
 gi|261285373|gb|ACX67344.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus sp. Y412MC10]
 gi|328938685|gb|EGG35064.1| putative sporulation kinase E [Paenibacillus sp. HGF5]
          Length = 374

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 17/226 (7%), Positives = 57/226 (25%), Gaps = 21/226 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            +  L  L  + + I H+I +P+ +I   ++LL    +     +  R+           +
Sbjct: 144 QNDKLAMLGKISASIAHEIRNPLTSIRGFIQLLRPHLVSLGKDEYARIILTEIDRANDII 203

Query: 68  RLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLS----RER 115
                 +        +  +  +          + +    ++ +              ++ 
Sbjct: 204 YEFLNSSKPSAPETKIVSVSSLLKEVVLLTESEALMKGCQINLHTDKTPPAFISVDVKQI 263

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEKFTQIVD 169
            +++LN+   A  ++       I+                 +  NG           + +
Sbjct: 264 KQVILNIIKNALDAINEHHDENITGMIDISARDTGKHINICISDNGGGMDQNTLN-HLFN 322

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +       +   +   +  +              K
Sbjct: 323 PFFTTKESGTGLGLSVSYSIIRNHGGTIAVDSQVGAGTEFVITFPK 368


>gi|239906256|ref|YP_002952996.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239796121|dbj|BAH75110.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 609

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + ++    + S  L     L + + H I +P+ ++   L  L+        + E  ++I 
Sbjct: 368 LEQSRDHLMQSEKLAMAGKLAAGVAHTIRNPLTSVKMRLFSLERGLKLDASQQEDFEVIA 427

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
                    ++           V   + L  +       +     + D  V V  +    
Sbjct: 428 EEIGHIDTIVRNFLEFARPPKLVAQPVSLSAVVDTTLTLLRHRLESYDVSVTVERSRRLP 487

Query: 110 DLSRERAKILLNLFM---VAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++S +  ++   L      A  ++         + T  ++         +  +G     P
Sbjct: 488 EISADPDQLKEALVNLVLNACEAMVEGGSIVIREETGVIEPYGRVVALRVSDDGPGIPPP 547

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++      +  +   +    V  +  E+   +     +      + +  
Sbjct: 548 -LIDRVFQPFFTTKGEGSGLGLAIVRRIVEEHGGWITVMSPETRGTTFTMVFP 599


>gi|295399495|ref|ZP_06809477.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312109947|ref|YP_003988263.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294978961|gb|EFG54557.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215048|gb|ADP73652.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 585

 Score =  124 bits (311), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 72/220 (32%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L +  ++D       + +I   S      ++ +     
Sbjct: 362 FVANVSHELKTPITSIKGFAETLLDGAMKDERTLEHFLSIIWKESERLQTLVQDLLDLSK 421

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKILLN 121
              +    +  +VD    L +I  + +        D R+  + +      +    +I +N
Sbjct: 422 IEQQEFQLHMETVDLTHLLHEIAIMFQRKAEEKGIDFRMHAAKSIYMEGDANRLKQIFIN 481

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A    P+GG+V +  ++ + E +  +K  G      E   +I +            
Sbjct: 482 LITNALTYTPKGGQVEVIAEEQEEETLVHVKDTGIGIEEAEIP-RIFERFYRVDKARSRH 540

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  L   +   +  +         +    K
Sbjct: 541 SGGTGLGLAIVKHLVEAHHGHITVKSAVGKGTTFTVHFPK 580


>gi|302341478|ref|YP_003806007.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301638091|gb|ADK83413.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 482

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
           + +N    + +  L +L  L S + H++ +P+  I  S ++L E     ++ +  R    
Sbjct: 246 LRQNNEQMIQTEKLTSLGTLTSGVAHELNNPLNNISTSTQILLEELDSPDLQEYHRELLA 305

Query: 55  -------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105
                   +       L+F R         D    + +  ++I+  I    +V+V     
Sbjct: 306 AIEQQVAKAKDIVGSLLEFARQREFEPSRHDLRAVIDETLKLIKGEIPAQVQVEVDAPAG 365

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKF 164
                      + L+NL + A  ++   G+++I  +          L  +G+    PE  
Sbjct: 366 IVMDMDKAHIVQALINLIINAIQAMDGAGRLSILARLAEGETVRLELTDSGSGI-APEVL 424

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   ++  +  E            L 
Sbjct: 425 PRIFDPFFTTKEVGRGTGLGLSITYGIIERHRGHIQAESRPGQGARFIITLP 476


>gi|251800001|ref|YP_003014732.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547627|gb|ACT04646.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 663

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 13/226 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           +++        + ++  L + + H+I +P+ A+    +LL             ++     
Sbjct: 438 LSEQHLIRSEKLSVIGQLAAGVAHEIRNPLTALKGFTQLLHRRTTDQNRHYFDMMLTELE 497

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------SWTGEKI 109
                +    L                        I   + +                  
Sbjct: 498 RINYIVGEFMLLSKPHQWQQISSCDMSSLLDDIIPIMQSQAIITNVSISAEKSQDLPIVQ 557

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             + +  ++L+NL   A  ++P GG++     +D K   +  +   G          ++ 
Sbjct: 558 CDANQIKQVLVNLMKNAIEAMPSGGELHVHMKKDHKGYMVIDIIDQGVGI-PQHVIDRLG 616

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +   +   L      +     +  L 
Sbjct: 617 EPFYTTKDTGTGLGLTVCFKIIQSHGGTLSITSEPNIGTTATIRLP 662


>gi|323340910|ref|ZP_08081159.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644]
 gi|323091572|gb|EFZ34195.1| sensor histidine kinase VicK [Lactobacillus ruminis ATCC 25644]
          Length = 626

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 20/243 (8%), Positives = 66/243 (27%), Gaps = 34/243 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
                +          S + H++ +P+ ++ + +E L      +  +    +++ +  + 
Sbjct: 373 TEQQKIDRER--RQFVSNVSHELRTPLTSMRSYIEALNDGAWKDPEVAPSFLKVTQDETD 430

Query: 59  SAIIRLKFMR-------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
             I  +  +                                + L        +  + +  
Sbjct: 431 RMIRMINDLLSLSRMDSGTVKLDFELVNLNELFNYILNRFDMMLKKDNNDTRETKSKNYT 490

Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           ++  +T   + +  +     +++ N+   A    P GG +T  + ++ N  I S+   G 
Sbjct: 491 IKRDFTKRDLWVEIDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNHVILSITDQGL 550

Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +                       +       +   +  ++  + I+        
Sbjct: 551 GIPRKDLGHIFDRFFRVDKARSRAQGGTGLGLAISKEVIEMHHGKIWVDSIEGKGSTFYI 610

Query: 212 LLE 214
            L 
Sbjct: 611 SLP 613


>gi|212692259|ref|ZP_03300387.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|265752877|ref|ZP_06088446.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|212665136|gb|EEB25708.1| hypothetical protein BACDOR_01755 [Bacteroides dorei DSM 17855]
 gi|263236063|gb|EEZ21558.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 807

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 54/228 (23%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     +  Q + +   +  
Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                      T        +    ++           +      
Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVPAGVELVFEKCLPECH 688

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ N    A      G       + +     F ++  G      +  T  
Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPRNKIKTVF 748

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       L  +    +  E  +           
Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796


>gi|315649024|ref|ZP_07902118.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus vortex V453]
 gi|315275705|gb|EFU39059.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus vortex V453]
          Length = 373

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 18/226 (7%), Positives = 59/226 (26%), Gaps = 21/226 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            +  L  L  + + I H+I +P+ +I   ++LL    +     +  R+           +
Sbjct: 143 QNDKLAMLGKISASIAHEIRNPLTSIRGFIQLLRPHLVSLGKDEYARIILTEIDRANDII 202

Query: 68  RLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLS----RER 115
                 +        +  +  +          + +    ++ +              ++ 
Sbjct: 203 YEFLNSSKPSAPETKIVSVSSLLKEVVLLTESEALMKGCQINLHTDETPPAYISVDVKQI 262

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLARFPEKFTQIVD 169
            +++LN+   A  ++       I+        D+       +  NG           + +
Sbjct: 263 KQVILNIIKNALDAINEHHDENITGMIDISARDNGKHIKICISDNGGGMDQNTLN-HLFN 321

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +       +   +   +  +              K
Sbjct: 322 PFFTTKESGTGLGLSVSYSIIRNHGGSIAVDSQVGAGTEFVITFPK 367


>gi|294508517|ref|YP_003572576.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294344846|emb|CBH25624.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 491

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIR 54
           MA N+   +  +     +     + + HD+ SPI +I   LE   + +  +  E  Q   
Sbjct: 242 MADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVSMKDGDLPPEERQRYV 301

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWT 105
            +++    RL  +         +++      IE          V+  +    +   V   
Sbjct: 302 TTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLR 361

Query: 106 GEKIDLSRERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            +  +             + L NL   A    P GG+V + + + + E   ++   G   
Sbjct: 362 PDLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNKQGEVCVAVADTGPGI 421

Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    F +    +           +       +   +   L  E       V    L
Sbjct: 422 PEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTVFRFRL 481

Query: 214 E 214
            
Sbjct: 482 P 482


>gi|172057001|ref|YP_001813461.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989522|gb|ACB60444.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 856

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 18/222 (8%), Positives = 59/222 (26%), Gaps = 20/222 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIR----- 63
            + +   S + H++ +P+ +I    EL+    +    +   +  I   +           
Sbjct: 614 RMKSEFVSTVSHELRTPLASIFGYTELMLAKDLPVDRQQRYLTTIHSETQRLTSLVNDFL 673

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
                           +D    + ++ +      +  +    +       +  +     +
Sbjct: 674 DVQRMESSQQQYQFVKLDLRNLIQEVAEFHAGSTSHHQLTLETGDRPLRWIEADEPKMRQ 733

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +  NL   A    P GG++ + +++ ++     +   G                      
Sbjct: 734 LFGNLINNAIKYSPDGGEIELKLEELEDRLRIQIIDEGIGIPQHALPELFSKFYRVDNSD 793

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I    +       +   +   +  E  +    + +  L 
Sbjct: 794 SRKIGGTGLGLAICQEIVRAHDGLIHVESTEGSGSIFTIELP 835


>gi|312882873|ref|ZP_07742605.1| osmolarity sensor protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369392|gb|EFP96912.1| osmolarity sensor protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 434

 Score =  124 bits (310), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 65/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++   +  + + ++      +      + +++ 
Sbjct: 224 EEDRALLMAGISHDLRTPLTRIRLATEMMSPQDSYLAEGIISDTEECNQIISQFMDYLKP 283

Query: 70  AFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                   V+      +I     ++             +         + + NL + A  
Sbjct: 284 VCQEAFLAVNLNDIASEIASSEGNYHVEVAVNFSDTLKDIYANPIAIKRAISNLVVNAIR 343

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDIQFYY 185
                  +T  +     +   S++ NG   +  +          G+     +   +    
Sbjct: 344 YGNGWVSITTGMSADGKQVWVSVEDNGPGIQQDQITKLLEPFTRGDTARGSEGTGLGLAI 403

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +A+++   +      +  V     L 
Sbjct: 404 VKRIANQHNGTISVSNRSEGGVRALLRLP 432


>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
 gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
            [Cylindrospermopsis raciborskii CS-505]
          Length = 1317

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
            ++I        +     S + H++ +P+ +IH SL +L              ++Q+   S
Sbjct: 796  RDITERKQVEKMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSSTSEQGKRLLQIATDS 855

Query: 57   SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVS 103
            +   +  +                   + D    +     +++                S
Sbjct: 856  TERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQPLADKAGVSLSIHNSNS 915

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
             + +         + L NLF  A      G  V +  +  K++ + +++  G      + 
Sbjct: 916  SSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQDTGRGIPEDKL 975

Query: 163  --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +       D   +       +  ++  ++  + I          L 
Sbjct: 976  ESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSILGEGSSFYFTLP 1031


>gi|256751996|ref|ZP_05492865.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|256749106|gb|EEU62141.1| PAS/PAC sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus CCSD1]
          Length = 361

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 68/223 (30%), Gaps = 24/223 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L    I++       + +I   S      +  
Sbjct: 130 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQARDKFLDIIDFESERLTRLIND 189

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114
           +                 ++    + DI  +++      +  ++                
Sbjct: 190 ILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVIKTNKDR 249

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL        P GG V +S ++  ++ I +++ NG      E   ++ +     
Sbjct: 250 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIITVEDNGIGI-SKENIPRLFERFYRV 308

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                  +    +    V  +    K  +  E           
Sbjct: 309 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFII 351


>gi|158521942|ref|YP_001529812.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
 gi|158510768|gb|ABW67735.1| PAS/PAC sensor signal transduction histidine kinase [Desulfococcus
           oleovorans Hxd3]
          Length = 591

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 67/234 (28%), Gaps = 27/234 (11%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSA 60
            +  ++ +     + + H++ +P+ +I    E L       +       +++I  ++   
Sbjct: 357 RMRQLETMRKDFAANVSHELKTPLTSIQGFTETLLAEPSLLDNAHVVRCLEIIANNTKRL 416

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK--- 117
              +  +        +            + +   +     +     ++I L  +      
Sbjct: 417 TTIIDDLLKLSEIEHADRQKDFNFQEAPLADVINSAAAICRPDLDSKQIKLESDCPADLA 476

Query: 118 ----------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      L+NL   A    P   +V IS +D   E   S+  +G          +I
Sbjct: 477 LPIDPFLLELALVNLVENAVKYSPNNSEVGISAEDKGREVHVSVIDHGTGIAEAHIP-RI 535

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +            +    +    V  +A  +  R+  +         + +  +
Sbjct: 536 FERFYRVDKARSRELGGTGLGLAIVKHVAQIHGGRIEVQSTPGKGSAFTLIFPR 589


>gi|167040619|ref|YP_001663604.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300914660|ref|ZP_07131976.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307724106|ref|YP_003903857.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|166854859|gb|ABY93268.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|300889595|gb|EFK84741.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X561]
 gi|307581167|gb|ADN54566.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
          Length = 456

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 68/223 (30%), Gaps = 24/223 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L    I++       + +I   S      +  
Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQARDKFLDIIDFESERLTRLIND 284

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114
           +                 ++    + DI  +++      +  ++                
Sbjct: 285 ILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVIKTNKDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL        P GG V +S ++  ++ I +++ NG      E   ++ +     
Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIITVEDNGIGI-SKENIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                  +    +    V  +    K  +  E           
Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFII 446


>gi|172056874|ref|YP_001813334.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989395|gb|ACB60317.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 587

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 73/229 (31%), Gaps = 17/229 (7%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
                 L    L +L  L + I H+I +P+  +  +L+LL +E     ++M +       
Sbjct: 355 SQQQVILHQEKLASLGQLAAGIAHEIRNPLTPVKMALQLLSEEKQNNPDMMNIALSELDR 414

Query: 60  AIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           A      +  +      T ++  +     +E++     +     +V              
Sbjct: 415 ANQLIQTMLDLSKNDKTTLAMAQIDMKKMMEKLTFILESKSHPYEVDCKIYTPAHMPPLY 474

Query: 117 -------KILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  ++L N    A  ++      G   + +    ++ +F ++ NG      +    
Sbjct: 475 ASENGLLQVLSNCIGNALDAVESKGTDGICHVHLHVYPDQFVFIVQDNGVGMDEYQI-QM 533

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +      S I+ + +  +    +  ++  R+  +        +     +
Sbjct: 534 LGQAFNTSKINGNGLGLFMSNQIVRQHNGRIEVDSKMGVGTTVQLFFPR 582


>gi|322375300|ref|ZP_08049813.1| sensory box histidine kinase VicK [Streptococcus sp. C300]
 gi|321279563|gb|EFX56603.1| sensory box histidine kinase VicK [Streptococcus sp. C300]
          Length = 449

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + D V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAK 117
           +    T     LI        I +     +                 +      + +  +
Sbjct: 271 IDNATTQLDVELINFTAFITFILNRFDKMRAQDQEKKYELVRDYPINSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172
           ++ N+   A    P GGK+T+S++ + ++ I S+K  G      +    F +        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|319654258|ref|ZP_08008346.1| hypothetical protein HMPREF1013_04966 [Bacillus sp. 2_A_57_CT2]
 gi|317393958|gb|EFV74708.1| hypothetical protein HMPREF1013_04966 [Bacillus sp. 2_A_57_CT2]
          Length = 543

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIR 54
            K   F L S  L  V  L + + H+I +P+  I   L+L      +        ++ I 
Sbjct: 316 KKAEEFLLQSEKLSIVGELAAGVAHEIRNPLTTIKGFLQLYKSGNSQINALLLSELERIE 375

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSR 113
             +   +   K   +        D +    ++     +   +  ++              
Sbjct: 376 NITTEMLSLGKPQAIQMDTAKLTDIIENTVELLSPQANMNGIQFKLNFADGDFLISCEKN 435

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  ++ LN+   A  ++ +GG + IS   +++ E I S +  G          ++ +   
Sbjct: 436 QIKQVFLNILKNAMEAMEKGGDIEISLKDNNEGECIVSFQDQGCGIPDEFLP-RLGEPFY 494

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   ++ +       ++   L 
Sbjct: 495 TLKEKGTGLGLMICHKIIKQHHGSIVYKSKIGEGTLIEITLP 536


>gi|309806454|ref|ZP_07700459.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
 gi|308167127|gb|EFO69301.1| PAS domain S-box protein [Lactobacillus iners LactinV 03V1-b]
          Length = 612

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L++   ++     + + +I+  
Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420

Query: 57  SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   I  +                 +            L     + +         +R+ 
Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     + +  +++ N+   A    P GG +TI +  +    I S+   G      
Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRK 540

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D                 +       +   +  ++  +  + +       + 
Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|149182578|ref|ZP_01861049.1| KinA [Bacillus sp. SG-1]
 gi|148849714|gb|EDL63893.1| KinA [Bacillus sp. SG-1]
          Length = 351

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLS 56
            K+      S  L     L S + H+I +P+ A+   L+L+      + +   +Q +   
Sbjct: 119 KKHEEMLRQSEKLALIGELSSGMVHEIRNPLTAMKGFLQLMKSHPKPEYIDIVLQELGQI 178

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDL 111
              A   L F + A       + L  + ++       + +  I VD  ++     E I  
Sbjct: 179 EEIANELLHFSKPAEHPLTRQNILDIVREVIHFSSVELFKRHIKVDFILEDERDIEIIGC 238

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++LLN+   +  ++   G++ + +          +  NG          ++ +  
Sbjct: 239 KTQLKQVLLNIIKNSIDAITTDGRIKVQISKDDKNVYIYICDNGVGIPKHHLN-RVGNSY 297

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S  +   +       +   +   +  E  ++     +  L 
Sbjct: 298 FTSKEEGTGLGMMVSFNIIKNHNGSIKFESEENQGTSFTITLP 340


>gi|20808918|ref|NP_624089.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517579|gb|AAM25693.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 469

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 75/233 (32%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MA+ +       D+     + + H++ SPI +I   ++ + +         + +++++  
Sbjct: 236 MARELA---QLEDMRKEFVANVSHELRSPITSIQGYIDGILDGTIPKEKTYDYLKVVQEE 292

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGE 107
           +      +  +                  D    +        +  +  D  V+V +  +
Sbjct: 293 TRRMSRLINDLLEMTKLESGEFPLNRTEFDINELIRICIIKFEKRIVEKDLTVKVDFEED 352

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
           +  +  +R    ++L NL   A       G + +  +   ++   ++K NG      +  
Sbjct: 353 RRFVFADRDKIEQVLTNLIDNAIKFSKPKGIIHLFTEVKGDKVFITVKDNGIGISPEDLE 412

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +     D   +  Y V  +   +K  +  E         +  L 
Sbjct: 413 HIWERFYKADKSRGKDGAGLGLYIVKKIIEAHKEEIWAESELKKGTSFTFTLP 465


>gi|330828767|ref|YP_004391719.1| sensory box sensor histidine kinase AtoS [Aeromonas veronii B565]
 gi|328803903|gb|AEB49102.1| Sensory box sensor histidine kinase AtoS [Aeromonas veronii B565]
          Length = 700

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 67/235 (28%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     L S  L AL  L + + H+I +P+  I  ++EL+            E + L+
Sbjct: 436 LTEARQQLLISEKLAALGELSAGVAHEINNPLAVILGNVELMKLELGEAAEPVSEELALV 495

Query: 54  RLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                      + +                     + +   ++   +   +   V+    
Sbjct: 496 LAQIERIRAITRSLLQYSRPGDYETAPVWQHLNPIIEESLTLVRSALRQQQVELVADLRA 555

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---------FSLKINGNLA 158
           +  +  +R ++L  L  +   +    G+      +S++              +  NG+  
Sbjct: 556 QQPIEADRQQLLQVLINLLVNASHALGEQGEIRVESRDWVDELGQLRGAEVRVIDNGSGI 615

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +I D    +      +       +       LL +         +  L
Sbjct: 616 EAA-IIDKIFDPFFTTRATGTGLGLALSHRIISRWGGELLVDSTPGQGSCFTVRL 669


>gi|218289376|ref|ZP_03493610.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240482|gb|EED07663.1| integral membrane sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 527

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 61/221 (27%), Gaps = 23/221 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIR----------- 63
              +   H++ +P+ A+   LE+L + G   ++E  + ++     A              
Sbjct: 298 QFVADASHELRTPLTALSGYLEVLQKGGDFTDEEWREALQQMHGEARRLAGLVDQMLRLA 357

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKIL 119
                    A      V     +  ++ +      + +   ++              ++L
Sbjct: 358 RAEDVRASWAGDKRERVRLGTLVMSLDALWRGLCGSRELTYRIEGDPAVFADPDALKQVL 417

Query: 120 LNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VE 173
            NL   A    P  G    ISV     E   ++  NG        P  F +    +    
Sbjct: 418 FNLVQNAVQHTPEEGGEIAISVWTDGCEAKLAVADNGTGIPKVHQPHVFERFYRVDEARS 477

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +  R+  E       V +  L 
Sbjct: 478 RAKGGAGLGLAICKAIVEAHGGRIACESEPGEGAVFTVTLP 518


>gi|150402298|ref|YP_001329592.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
 gi|150033328|gb|ABR65441.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C7]
          Length = 614

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 21/223 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66
           DL + L S + H++ +P+ +I   ++LL +         + E + +I  +S         
Sbjct: 389 DLKSELISIVSHELRTPLTSILGYIQLLKDETAGKLNEKQKEFVSVISENSERLKRITDN 448

Query: 67  MRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA 116
           M            G    ++    + +I   ++ F      + +             +  
Sbjct: 449 MSDLVSVDDDVLDGEFNKLNIKNAVEEIISSLQHFADSRNIILLEDVDDSYIKGDKSKIH 508

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           ++L NL   A     +  KVT++  +        +   G           F +    +  
Sbjct: 509 QVLANLIENAVKFSKKQTKVTVTGFEDNGNIHLEITDQGPGIPKEHLDKIFDRFYQIDSS 568

Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    +       +   +   +  E       ++  L  
Sbjct: 569 SKREIGGSGLGLAVCKKIVESHGGSIWVESKIGKGTIVHVLFP 611


>gi|115374056|ref|ZP_01461345.1| alkaline phosphatase synthesis sensor protein PhoR [Stigmatella
           aurantiaca DW4/3-1]
 gi|310819376|ref|YP_003951734.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115368946|gb|EAU67892.1| alkaline phosphatase synthesis sensor protein PhoR [Stigmatella
           aurantiaca DW4/3-1]
 gi|309392448|gb|ADO69907.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 506

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 26/233 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS 59
               LS +       S + H++ +P+ +I   +E L      +     EV+QL+   +  
Sbjct: 273 REAKLSRLK--TDFVSLVSHELRTPLTSIRMFIETLALGRLKDPAQTQEVLQLLSRETER 330

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKID 110
               ++ +                      + D      R         ++V        
Sbjct: 331 LSALIERVLDWARLESGRKEYQREPTAVADVVDTAVAAFRAQRLDGGVELKVDVPSGLPQ 390

Query: 111 LSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R  +    LNL   A+    +  ++ +SV+  +     S++ NG      ++  +I
Sbjct: 391 VEVDRHAVAGALLNLLQNAYKYSGQDKRIALSVRADRRWVALSVEDNGVGIAPRDR-QRI 449

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +             +   +       +   +  R+  +       + +  L 
Sbjct: 450 FERFYRVDNLLTRKTEGSGLGLAITKRIIEAHGGRISVQSKLGKGSLFTLQLP 502


>gi|317127618|ref|YP_004093900.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472566|gb|ADU29169.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 423

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 73/227 (32%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNL--SSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           M +     +    M+LV+ L S I H++ +P+  +   L+LL +       ++E ++L  
Sbjct: 184 MRETRMLKIRTEKMELVSQLASSISHEVRNPLTVVRGFLQLLQQVELPKKKKEEYVKLAI 243

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
                A   +         +   +  +   +  +     +          ++ ++    I
Sbjct: 244 SEIDRAESIIGDYLTFAKPSKEKEEFLNTKEELERALEVIKPLANMNSVAIETAFHPCWI 303

Query: 110 DLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              ++   + LLN+      ++P GG + I      N+ +  +  NG      E+  ++ 
Sbjct: 304 RGDKQLFQQCLLNITKNCIEAMPNGGTLRIHTHFDGNKVVIHVSDNGIGM-TEEQQRRLG 362

Query: 169 DGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +       +       +            +  L 
Sbjct: 363 EPYYTTKGKKGTGLGMMVAFRIIENFNGSISVSSELHKGTTFTLCLP 409


>gi|148263634|ref|YP_001230340.1| multi-sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397134|gb|ABQ25767.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 592

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 61/228 (26%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLK 65
             +     + + H++ +P+  I    E L       +       +++I   S      + 
Sbjct: 362 EKIRRDFVANVSHELRTPVTVIKGYAETLLSGALASDPERAVRFVEIIHSHSERLTSLIG 421

Query: 66  FMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSR 113
            +       +   +  +  +   G +   +           ++     I           
Sbjct: 422 DLLTLSELESGDVSLELSMVNIEGTVRHALMLLEQKAADKGITIDCSTIKAAPPILGDRG 481

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
              ++L+NL   A    P  G +T+   D +     S+   G      +   +I +    
Sbjct: 482 RLEQVLINLLDNAIKYTPEKGTITVKAADEEKMLKISVTDTGMGIPPKDLP-RIFERFYR 540

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  +   +   L  E         S  L+K
Sbjct: 541 VDEARSREQGGTGLGLSIVKHIVQAHGGALSVESTVGKGSTFSFTLKK 588


>gi|120601883|ref|YP_966283.1| histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120562112|gb|ABM27856.1| histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 418

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 75/263 (28%), Gaps = 50/263 (19%)

Query: 1   MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDE-------------- 42
           + K        +  +    +L + + H++ +P+ AI+   E +L                
Sbjct: 153 LQKEFQAKFHQAEKMATVGMLAAGVAHEVNNPLTAINGFAEGILRRVERLRGSVDPDLHA 212

Query: 43  --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                   ++   R         L F R        V+  + + D  +++ + +   K  
Sbjct: 213 DLADYAGTILGECRRCQEIVHSLLTFSRPHSSAFSPVNLNVVVDDTLKLLHNHLKQPKYR 272

Query: 101 QVSWTGEKID-------LSRERAKILLNLFMVAHASLP--------------------RG 133
            V                  +  +++LNL + A  +L                     + 
Sbjct: 273 HVRIDTRLCPTAPVILGCEAQLKQVMLNLLVNALDALEAVAPSAGDSGDDAPPDAHGGKT 332

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191
             +T++    +    F+++  G+     E    + +    +        I       +  
Sbjct: 333 AVITVAPFRDERHAGFTVRDTGSGI-PQEHLHSLFEPFFTTKPVGRGIGIGLSTCYTIVT 391

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
           E+   +  E  +    V +  L 
Sbjct: 392 EHGGDISVESKEGEGSVFTVTLP 414


>gi|89100386|ref|ZP_01173250.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
 gi|89084905|gb|EAR64042.1| sensory box histidine kinase PhoR [Bacillus sp. NRRL B-14911]
          Length = 587

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 72/221 (32%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L +  + D+      + +I   S      ++ +     
Sbjct: 365 FVANVSHELKTPITSIKGFSETLLDGAMHDQAALSAFLDIILKESDRLQSLIQDLLDLSK 424

Query: 68  ---RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120
              +        +D    LG+    +          ++ S       +  +     ++ +
Sbjct: 425 TEQQGFRLSVQEMDLSSLLGECLAILNGKAKDKAIDIEYSDQSGNGWIKGDPHRLKQVFI 484

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P+GGK+++S+++ +++    +K  G      E   +I +           
Sbjct: 485 NLLTNAITYTPQGGKISVSLEEKEDKVQVEVKDTGMGIDQDEIP-RIFERFYRIDKARSR 543

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  L   +K  +  E            L +
Sbjct: 544 NSGGTGLGLAIVKHLVEAHKGSITVESEVGKGTTFKVQLHR 584


>gi|237734078|ref|ZP_04564559.1| integral membrane sensor signal transduction histidine kinase
           [Mollicutes bacterium D7]
 gi|229382904|gb|EEO32995.1| integral membrane sensor signal transduction histidine kinase
           [Coprobacillus sp. D7]
          Length = 524

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 22/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           NI    ++M +     S + H++ +P+ +I    ELL+     +     + +  I     
Sbjct: 288 NITEQHNAMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVINDKDASKKALDKIHDEVN 347

Query: 59  SAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +    +  + +                     +  + D  QV  D   +    ++     
Sbjct: 348 NMSTLINDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEIDKKHLQVDKELE-DIT 406

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                +   ++L NL   A      GGK+ I         I  +   G      +    F
Sbjct: 407 YTSNHQHMHQLLSNLITNAIKYNVDGGKIIIKSYQFGRNIIIEVSDTGRGISKIDQGRVF 466

Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +           +    V  +    +  +               L 
Sbjct: 467 ERFFRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEGTTFKVTLP 518


>gi|167756094|ref|ZP_02428221.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402]
 gi|167704086|gb|EDS18665.1| hypothetical protein CLORAM_01614 [Clostridium ramosum DSM 1402]
          Length = 565

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 22/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           NI    ++M +     S + H++ +P+ +I    ELL+     +     + +  I     
Sbjct: 329 NITEQHNAMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVINDKDASKKALDKIHDEVN 388

Query: 59  SAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +    +  + +                     +  + D  QV  D   +    ++     
Sbjct: 389 NMSTLINDILMISRLENKDVDVIKHPVHLTPLVDEIIDTMQVEIDKKHLQVDKELE-DIT 447

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                +   ++L NL   A      GGK+ I         I  +   G      +    F
Sbjct: 448 YTSNHQHMHQLLSNLITNAIKYNVDGGKIIIKSYQFGRNIIIEVSDTGRGISKIDQGRVF 507

Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +           +    V  +    +  +               L 
Sbjct: 508 ERFFRCDQGRDKETGGTGLGLAIVKHIVQYYQGNITLTSKLHEGTTFKVTLP 559


>gi|167037241|ref|YP_001664819.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320115660|ref|YP_004185819.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166856075|gb|ABY94483.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319928751|gb|ADV79436.1| PAS sensor protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 456

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 68/223 (30%), Gaps = 24/223 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L    I++       + +I   S      +  
Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIDNPQARDKFLDIIDFESERLTRLIND 284

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114
           +                 ++    + DI  +++      +  ++                
Sbjct: 285 ILTLSEIENVKEGYPKEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVIKTNKDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL        P GG V +S ++  ++ I +++ NG      E   ++ +     
Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIVTVEDNGIGI-SKENIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                  +    +    V  +    K  +  E           
Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEIFVESEVGRGTKFII 446


>gi|222524324|ref|YP_002568795.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|222448203|gb|ACM52469.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 482

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 76/234 (32%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +       L S  L A+  L + + H+I +P+ A  NSL L+++       +   + + +
Sbjct: 243 LNAAQAQLLQSAKLAAVGELAASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQ 302

Query: 55  LSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                    +  MR  +  +         +      L  +   +            +   
Sbjct: 303 QELGRIARIITRMRDFYRPSRGELSSTNVNALLRETLELVTTHLRHNHVAVHAHLANDLP 362

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARF 160
                + +  ++ LN+ + A  ++P GG++T+         ++      ++   G     
Sbjct: 363 AITAHADQLRQVFLNVILNACDAMPNGGELTVKSSLIAARPEAPAALAIAISDTGVGI-A 421

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    + +    +      +       +  ++  R+L +         + LL 
Sbjct: 422 PEHLPHLFEPFYTTKPHGTGLGLAISAHIVTQHGGRILVDSQPGSGTTFTILLP 475


>gi|224537976|ref|ZP_03678515.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520413|gb|EEF89518.1| hypothetical protein BACCELL_02865 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 806

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 19/227 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ +I     LL E    +E  + I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNSIVGFSSLLAETDDREERQEYIKIVETNNE 637

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107
           +                         +D       I + +E  +     +          
Sbjct: 638 LLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSMEMKVPETVDLVFEKYMPDCH 697

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ N    A     +G       Q + +E  F ++  G      EK   I
Sbjct: 698 IYTDKNRFMQVITNFINNALKFTKQGTIALGYEQTAPHEIKFYVRDTGFGI-PKEKIDSI 756

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +  V   + +    +       L  +   ++  E  +         
Sbjct: 757 FERFVKLNTFVQGTGLGLSICKSLVSQMGGKIGVESTEGEGSCFWFT 803


>gi|189424232|ref|YP_001951409.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189420491|gb|ACD94889.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 551

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 76/231 (32%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQ 51
            K       +  L A+  L + + H++ +P+G+I     LL         +      + +
Sbjct: 315 KKQQELYHRTEKLSAIGQLSAGVAHELNTPLGSILGYARLLLKQENLTQQQREQLAVIAE 374

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRV---QVSWT 105
             + S       L F R A      +   D    + +   ++   ++  K +    +   
Sbjct: 375 QAKKSGTIIQALLNFSRHAQPTQCRLDACDLNSVIKNALCLLTTELSKRKIILTTDLELI 434

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +         +++LNL M A  ++   G++ I V+         ++ +G      E  +
Sbjct: 435 PKVCADPWGIEQVVLNLVMNALQAIGSQGEIRIIVRRQPEGVRLEVQDSGPGI-PDEVRS 493

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +    +   +       + +EN   +     D        +L 
Sbjct: 494 RIFDPFFTTKPFGEGTGLGLSICAGIVNENGGNIDIVKSDSRGTTFVVILP 544


>gi|147676371|ref|YP_001210586.1| membrane-associated sensory histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146272468|dbj|BAF58217.1| hypothetical membrane-associated sensory histidine kinase
           [Pelotomaculum thermopropionicum SI]
          Length = 478

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 59/211 (27%), Gaps = 19/211 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
            H++ +P+ +IH  LE+L              ++ +   S      +  + L      + 
Sbjct: 267 SHELRTPLTSIHGFLEVLLRGAASQPDQLQKALKSMHSESERLTRLVHDLLLLAKLDRTP 326

Query: 78  DSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                      + L    Q+       +  +Q+           +  +++LNLF  A   
Sbjct: 327 QVELAEGLLSTMILDMEPQLRILAGNRELSLQIEPGVVCRYDVNKMKQVILNLFHNAVQH 386

Query: 130 LPRGG-KVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVES--TIDSHDIQF 183
               G  + +S+         S++ NG        P  F +    +V          +  
Sbjct: 387 TDPEGGCIRLSLSRVDGGVRLSVQDNGPGIGEEYLPHIFDRFYRIDVSRARKYGGSGLGL 446

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +   +  E            L 
Sbjct: 447 AITKAIVDIHGGVISVESKPGEGCTFHIWLP 477


>gi|332968095|gb|EGK07182.1| phosphate regulon sensor histidine kinase protein PhoR [Desmospora
           sp. 8437]
          Length = 585

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 65/226 (28%), Gaps = 23/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ ++    E L     ++  +  E +++I+  S+     +  
Sbjct: 361 EKMRTEFVANVSHELKTPVTSLRGFAETLLDGAAEDPDMRKEFLEIIQAESLRLERLIAD 420

Query: 67  MRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     + L       +       +  RV+              
Sbjct: 421 LLDLSKIESRNMPLDIQTIGIGELLRSTAKTVEEQMRKRKLSFRVKSEEEFPVQVDPDRF 480

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A    P GG+V +S    + +    +   G      +   +I +      
Sbjct: 481 SQILLNLLSNAMTYTPAGGEVILSAGRGETDWWIRVADTGIGIPGEDLP-RIFERFYRVD 539

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +    V  L   ++  +           ++    +
Sbjct: 540 KARSRESGGTGLGLAIVKHLVEAHQGEIQVTSRAGKGTEITLTFPR 585


>gi|313149253|ref|ZP_07811446.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138020|gb|EFR55380.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 525

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 19/228 (8%)

Query: 5   ICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           I   + + +   + +   + + H+I +P+ AI    +L+ E   E E  Q   +   ++ 
Sbjct: 296 IAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEADDEYEKRQYADIVEHNSS 355

Query: 62  IRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L                    +      D  + L ++              +V     
Sbjct: 356 VLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELYVKSVKPEVRLMLDEVDPQLC 415

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                   ++IL+NL   A      G  +    Q+  +   F +   G         T  
Sbjct: 416 IQGDWERISQILVNLITNAIKFTSAGE-IHFGFQEKADMVQFYVSDTGKGIPAERVATIF 474

Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +      +L  +   R+          V    L 
Sbjct: 475 QRFGKIDDFVQGTGLGLTICRMLVEKMGGRIWVRSKQGKGTVFYFTLP 522


>gi|309807799|ref|ZP_07701731.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
 gi|308168901|gb|EFO70987.1| PAS domain S-box protein [Lactobacillus iners LactinV 01V1-a]
          Length = 612

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L++   ++     + + +I+  
Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420

Query: 57  SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   I  +                 +            L     + +         +R+ 
Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     + +  +++ N+   A    P GG +TI +  +    I S+   G      
Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRK 540

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D                 +       +   +  ++  +  + +       + 
Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|255011436|ref|ZP_05283562.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 522

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 19/228 (8%)

Query: 5   ICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           I   + + +   + +   + + H+I +P+ AI    +L+ E   E E  Q   +   ++ 
Sbjct: 293 IAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEADDEYEKRQYADIVEHNSS 352

Query: 62  IRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L                    +      D  + L ++              +V     
Sbjct: 353 VLLNLFNDILDLSALEAGSLELSYHPVKLKDICLQLHELYVKSVKPEVRLMLDEVDPQLC 412

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                   ++IL+NL   A      G  +    Q+  +   F +   G         T  
Sbjct: 413 IQGDWERISQILVNLITNAIKFTSAGE-IHFGFQEKADMVQFYVSDTGKGIPAERVATIF 471

Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +      +L  +   R+          V    L 
Sbjct: 472 QRFGKIDDFVQGTGLGLTICRMLVEKMGGRIWVRSKQGKGTVFYFTLP 519


>gi|162453443|ref|YP_001615810.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161164025|emb|CAN95330.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 511

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           +       +    L A+  L + + HD+ +P+GA+ N+   L +              + 
Sbjct: 261 LRDAQEARMRMEKLAAVGQLAASVGHDLRNPLGAVRNANHYLKKRILGTDLGAEPRVAQF 320

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           + +I     +    +  +           +   L  +       + +  RV+V       
Sbjct: 321 LSIIEKELAACAKIISNLLDFARERRPRFAACALRPLVDDAISVVEIPPRVRVDNDVPDT 380

Query: 110 -----DLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162
                    +  ++L+NL   A  ++P   +  + +  + + +    S+  +G      E
Sbjct: 381 LPVVEIDKDQFRQVLVNLIQNAAEAIPAEREGRVRIAAERTGDGVTLSVVDDGTGI-SEE 439

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +    + +    +       +   +   +               L 
Sbjct: 440 TLARIFEPLFSTKLKGTGLGLAISAGIVERHGGTIEATSALGSGTTFVVRLP 491


>gi|158339280|ref|YP_001520457.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309521|gb|ABW31138.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 487

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 60/207 (28%), Gaps = 15/207 (7%)

Query: 22  ICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
           + H++ +PI  I   LE L      + E + LI          +  + L          +
Sbjct: 261 VSHELRTPITVIQGQLETLAYRPEKQPETISLITNELQQMNRLVNDLLLLTKAECPDFLI 320

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTG--------EKIDLSRERAKILLNLFMVAHASLPR 132
           +   D++ + E+     + +                    +  ++ ++NL   A      
Sbjct: 321 MKPEDLDWLTEELYLKARSLTSDRDWRLEAKGLYPATIDQQRFSQAVMNLVQNALRHTQP 380

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQFYYVI 187
           G  + +      +   F ++  G      ++  +I +            +   +    V 
Sbjct: 381 GDVIALGSAVDGDSLRFWVRDTGEGIALADQT-RIFERFAQATTNNRPFEGAGLGLAIVS 439

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +  R+            + +L 
Sbjct: 440 KIVQAHGGRIELWSELGQGATFTLILP 466


>gi|157692071|ref|YP_001486533.1| sporulation sensor histidine kinase A [Bacillus pumilus SAFR-032]
 gi|157680829|gb|ABV61973.1| sporulation sensor histidine kinase A [Bacillus pumilus SAFR-032]
          Length = 609

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53
            +     L S  L     L + I H+I +P+ AI   L+L+       +   E    +L 
Sbjct: 384 KQTEELMLRSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLIKPKTKDRDQYFEIVFSELS 443

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKI 109
           R+  + + + +           ++D    + ++  ++E    ++  +     +       
Sbjct: 444 RIEIILSELLMLAKPQQTASMQTLDLKKIISEVTALLETQANLNGILMNTSEIEEGLLMN 503

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +NL   A  S+P GGKV I+ +  ++    +++  G          +I +
Sbjct: 504 GDQNQLKQVFINLIKNAVESMPDGGKVDITAKAERDGIHVTIRDEGIGI-PEAVMKRIGE 562

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +      +       +   +   +  +   +       +  
Sbjct: 563 PFLTTKEKGTGLGLMVTFNILENHNGTIRVDSHPEKGTAFHIMFP 607


>gi|294777585|ref|ZP_06743036.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294448653|gb|EFG17202.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 807

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     +  Q + +   +  
Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                          D  +   +I + +   +     +          
Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVPAGVELVFEECLPGCH 688

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  ++    +++ N    A      G       + +     F ++  G      +  T  
Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 748

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       L  +    +  E  +           
Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796


>gi|253700682|ref|YP_003021871.1| histidine kinase [Geobacter sp. M21]
 gi|251775532|gb|ACT18113.1| histidine kinase [Geobacter sp. M21]
          Length = 412

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 62/224 (27%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +          L   + + + H+I +P+  I    +++ +   E           +  
Sbjct: 186 MTRKGNLA----KL-GEMGALLAHEIRNPLAGIKGFAQVIAKKPQEARNGAFAENIVIEV 240

Query: 61  IIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKID 110
           +           +           D    +     ++    A          + +   + 
Sbjct: 241 VRLETLVNDLLAYAAGDGAQPARFDLGQLIDHALSLLAPEAAERAVAVSCSSTGSLFVMG 300

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 + LLNL   A  ++  GG + I+   +  E   S+K  G      +   ++ + 
Sbjct: 301 NRDRIEQALLNLGKNALQAMGAGGVLEIACATAGGEARISIKDTGQGIAEADLP-KVFEP 359

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E+   +  E        ++  L 
Sbjct: 360 FFTTKARGTGLGLALCRKVIEEHGGTISLESRVGEGTTVTFALP 403


>gi|251799114|ref|YP_003013845.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247546740|gb|ACT03759.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 549

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 71/223 (31%), Gaps = 13/223 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58
           + ++    +  + L+  + + I H+I +P+  I   ++L+ E     +     ++     
Sbjct: 321 LLRSEVGRMERLSLIGQMAASITHEIRNPMAVIRGFVQLMRERSPENQQAYYGIVMDELD 380

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKID 110
            A   +                  L DI + +   +  D  ++          +      
Sbjct: 381 RANTIISDFLSLAQNRALTMEAGSLHDIIREMVPLLNADANLRGQTIEVELCDFVPAIQL 440

Query: 111 LSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +E  ++LLNL      ++   G+  +  S    K E +  ++  G      E+  +I 
Sbjct: 441 NEKEIKQLLLNLARNGMEAMSEKGRLSIHTSYIVEKEEIVLRIQDQGVGI-SDEQKQRIF 499

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           D    +      +     + +A  +  R+  E           
Sbjct: 500 DPFFSTKTQGTGLGLPLCVSIAERHNGRINVESEQGVGTTFIV 542


>gi|78221775|ref|YP_383522.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78193030|gb|ABB30797.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 499

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 20/224 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63
            +  L ++  + + I H+I +P+  I  ++ ++     +     E++  +          
Sbjct: 264 RADRLASVGEMAAGIAHEIKNPLAGISAAMTIIRQDFSDEDPRKEIIGEVVEQVSRLDKT 323

Query: 64  LKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +  +      T                L    Q                  E     ++ 
Sbjct: 324 VNDLLFFGKPTPPEPTYADVNAILRKTLLFALQHKGGKNIAKSLDLADGLPEIFVDPKQV 383

Query: 116 AKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++ LNL + A  ++   G            D K     ++   G          +I   
Sbjct: 384 QQVFLNLILNAIQAMQADGGTLTVGSSLVDLDGKGWVRTTIADTGPGI-PEPIIGKIFTP 442

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       L  ++   L     D    V +  L 
Sbjct: 443 FFTTKAQGTGLGLAICHKLITQHGGTLSVTSEDGKGTVFTIDLP 486


>gi|297544880|ref|YP_003677182.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842655|gb|ADH61171.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 456

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I   +E L     +     D+ + +I   S      +  
Sbjct: 225 EKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARDKFLDIIDFESERLTRLIND 284

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRE 114
           +              T   +    + DI  +++          +                
Sbjct: 285 ILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKNITLIKDLNCPGLVINTNKDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL        P GG V +S ++  ++ I  +K NG      E   ++ +     
Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVKDNGIGI-SKENIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                  +    +    V  +    K  +  E         
Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEVGKGTKF 444


>gi|206977534|ref|ZP_03238428.1| sensor histidine kinase KinD [Bacillus cereus H3081.97]
 gi|206744252|gb|EDZ55665.1| sensor histidine kinase KinD [Bacillus cereus H3081.97]
          Length = 486

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 261 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 320

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 321 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 380

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V ++K      +   G           +    
Sbjct: 381 KDHMKQVVLNITKNAIEAMTFGDTLTIFVTNNKTHAQLQIIDTGKGI-PKHIQKHLFHPF 439

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +    I++    +   + 
Sbjct: 440 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 482


>gi|150003606|ref|YP_001298350.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149932030|gb|ABR38728.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 807

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     +  Q + +   +  
Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                          D  +   +I + +   +     +          
Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVPAGVELVFEECLPGCH 688

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  ++    +++ N    A      G       + +     F ++  G      +  T  
Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 748

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       L  +    +  E  +           
Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796


>gi|322385036|ref|ZP_08058686.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100]
 gi|321270946|gb|EFX53856.1| sensor histidine kinase VicK [Streptococcus cristatus ATCC 51100]
          Length = 454

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGALSEPVAPEFVKVSLTETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   ++   I +  +     +
Sbjct: 271 IDNNTSHLDVELTNFTAFITYILNRFDKIKNQDETKKYEIIRDYSITPIWVEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GG +T+SV+ +  + I S+   G      +    F +    +   
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSVRTTDVQLILSISDEGLGIPKQDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHHGFIWAKSEYGKGSTFTIVLP 432


>gi|288554580|ref|YP_003426515.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
 gi|288545740|gb|ADC49623.1| two-component sensor histidine kinase yycG [Bacillus pseudofirmus
           OF4]
          Length = 607

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 58/220 (26%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLK---FMRL 69
             + + H++ +P+  + + LE L++  +++  +        +  +   I  +     +  
Sbjct: 380 FVANVSHELRTPLTTMKSYLEALEDGALDEPELARRFVGVTQNETERMIRLVNDLLQLSK 439

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---------KILL 120
              +   +                              +                 +++ 
Sbjct: 440 IDSHDYRLQLTWVDFGQFLHEVIDRFEMVAQGRDIHFTRHISGHPTYVEVDKDKLTQVID 499

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           N+   A    P GG +T ++    +    S+   G      E  ++I D           
Sbjct: 500 NIISNAMKYSPEGGNITTTLMHQGHNVRVSISDEGMGI-PRENQSKIFDRFYRVDKARAR 558

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I    +       L H +   +           +   L 
Sbjct: 559 SIGGTGLGLAIAKELVHAHGGEIWVSSEYGSGTTIYFTLP 598


>gi|88798399|ref|ZP_01113984.1| Signal transduction histidine kinase [Reinekea sp. MED297]
 gi|88778839|gb|EAR10029.1| Signal transduction histidine kinase [Reinekea sp. MED297]
          Length = 589

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMS 59
            +       +    +   + + H++ +P+  I  S++L+     +       L   S   
Sbjct: 211 RRLADRAQQASKAKSEFLATMSHELRTPLNGIIGSVQLMQHEAEQPSPWLNSLAVSSEAL 270

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------------T 105
                  +  +   +G +       D+ Q+I D  AV     V                 
Sbjct: 271 LTQINDVLDFSSIESGQISIEPAPCDLIQMIRDIEAVFYPQSVDAELLLRVLLPDTWSSH 330

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +    +  +ILLNL   A      G  V    +    +  + +   G      +   
Sbjct: 331 CWVMADGHKIRQILLNLLSNAFKFTEHGQIVLAVQKQEDGQFQWRVSDTGIGIPADKLEA 390

Query: 166 QIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   + + +       +       LA      L            +  L 
Sbjct: 391 IFQSFQQAESDTQRQYGGSGLGLAISRRLAELMGGSLTVTSKPGQGTDFTLTLP 444


>gi|313149705|ref|ZP_07811898.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138472|gb|EFR55832.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 641

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 61/228 (26%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        M   +L  + + H+I +P+ AI    E++     E E  + + +   ++ 
Sbjct: 273 AKRRAEEADRMK--SLFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLGIIQQNSN 330

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                 +    T        +  + ++          ++ S    
Sbjct: 331 LLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLKMKKGVELNVIRPSDEIW 390

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L N    A  +   G      V++ +    F +   G      +     
Sbjct: 391 ISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKFYVADTGCGISKEKLPLIF 449

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +       +      R+  E   +     +  L 
Sbjct: 450 TRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELEKGSTFTLYLP 497


>gi|294499108|ref|YP_003562808.1| sporulation kinase KinA [Bacillus megaterium QM B1551]
 gi|294349045|gb|ADE69374.1| sporulation kinase KinA [Bacillus megaterium QM B1551]
          Length = 574

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 72/222 (32%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + +    + + LV  L + I H+I +P+ A+   ++LL E   +   +++I        
Sbjct: 351 TEKLLRESAQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLKETSGQPYYVEMINHELDRIE 410

Query: 62  -------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSR 113
                     K     +      D L     + +V      +  + ++       +    
Sbjct: 411 LITDEFLSLAKPQAKTYRDKHVQDILENTLKLAEVQGITEKIHVKKEIDLHLPLVLCEEN 470

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  ++  N+F  A  S+P GG VTI   + ++   +      G      E+   +     
Sbjct: 471 QLKQVFSNIFKNAVESMPSGGTVTIQLKRFNQENLVVRFSDEGPGI-TQERMQHLGKPFY 529

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +  E++  +           +  LL 
Sbjct: 530 STKEKGTGLGLMVCYKIIREHRGEINFVSELGKGTTVDILLP 571


>gi|260171368|ref|ZP_05757780.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315919679|ref|ZP_07915919.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693554|gb|EFS30389.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 637

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 59/220 (26%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +  + ++  + + H+I +P+ AI    E++   +    + E +++I+ +S   +  +  
Sbjct: 279 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTEGEEEKREYLEIIQRNSNLLLQLIND 338

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                        + F        +  +  + Q+        K ++              
Sbjct: 339 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 398

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            ++L N    A  +  +G        +        +   G      +             
Sbjct: 399 MQVLFNFLSNAIKNTEKGSITLGLKHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKLND 457

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +      R+          V +  L 
Sbjct: 458 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSVFALYLP 497


>gi|255011870|ref|ZP_05283996.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 3_1_12]
          Length = 629

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 61/228 (26%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        M   +L  + + H+I +P+ AI    E++     E E  + + +   ++ 
Sbjct: 261 AKRRAEEADRMK--SLFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLGIIQQNSN 318

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                 +    T        +  + ++          ++ S    
Sbjct: 319 LLLQLINDILDLSRIESGKSEMHCQLTEISGLADEVYKVHRLKMKKGVELNVIRPSDEIW 378

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L N    A  +   G      V++ +    F +   G      +     
Sbjct: 379 ISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKFYVADTGCGISKEKLPLIF 437

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +       +      R+  E   +     +  L 
Sbjct: 438 TRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELEKGSTFTLYLP 485


>gi|167590124|ref|ZP_02382512.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ubonensis Bu]
          Length = 861

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 67/242 (27%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           + +   + + D       + L + + H+I +P+  I  +LELL+   ++      ++   
Sbjct: 488 RKLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSALDVSQHGRVQTLR 546

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQ 101
            SA   L  +     ++      + +  IE  +   I  +                  + 
Sbjct: 547 TSAGSLLALVNDILDFSKIEAGAMTVESIEFGVMTVIERELSAFAPIAKAKGLQLFCEMD 606

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLA 158
            S +          A++  NL   A           +V+I       E    ++  G   
Sbjct: 607 ASISQRMRGDPMRFAQVFGNLLNNAIKFTDEGRVTARVSIVDACGAPELAVEVEDTGIGI 666

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             PE   ++          +        +       L      R+            +  
Sbjct: 667 -SPEHQHKLFKAFSQVDASITRRYGGTGLGLALCARLVTAMGGRISVASEPGAGSCFTVR 725

Query: 213 LE 214
           L 
Sbjct: 726 LP 727


>gi|220915566|ref|YP_002490870.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            dehalogenans 2CP-1]
 gi|219953420|gb|ACL63804.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            dehalogenans 2CP-1]
          Length = 1527

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 14/227 (6%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
            +A      +    L AL  L + + H++ +P+G I NSL     +L   G    ++ ++ 
Sbjct: 1283 LAHAQRQLIQQERLAALGELSAVVAHEVRNPLGVIFNSLGSLRRMLRPQGDARMLLDIVG 1342

Query: 55   LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +          L F R +            + +             ++Q         
Sbjct: 1343 EEADRLNRIVGDLLDFARPSTPEVRPEPLDRVVEEALATALAQNGQPIQIQREVDPALPQ 1402

Query: 111  LSRERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +  +   +   +  VA  +   +PRGG++T+ ++   +  +  L+  G      E   +I
Sbjct: 1403 VPMDARLVRQAVVNVAVNAVQAMPRGGRLTVRLRRDGDAAVLELEDTGAGI-PDEVRGRI 1461

Query: 168  VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +      +    V  +   +   +            +    
Sbjct: 1462 FEPFFTTKASGTGLGLAVVRRIVEGHGGEVTVTSRPGAGTAFALRFP 1508


>gi|197120866|ref|YP_002132817.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            sp. K]
 gi|196170715|gb|ACG71688.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            sp. K]
          Length = 1527

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 14/227 (6%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
            +A      +    L AL  L + + H++ +P+G I NSL     +L   G    ++ ++ 
Sbjct: 1283 LAHAQRQLIQQERLAALGELSAVVAHEVRNPLGVIFNSLGSLRRMLRPQGDARMLLDIVG 1342

Query: 55   LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +          L F R +            + +             ++Q         
Sbjct: 1343 EEADRLNRIVGDLLDFARPSTPEVRPEPLDRVVEEALATALAQNGQPIQIQREVDPALPQ 1402

Query: 111  LSRERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +  +   +   +  VA  +   +PRGG++T+ ++   +  +  L+  G      E   +I
Sbjct: 1403 VPMDARLVRQAVVNVAVNAVQAMPRGGRLTVRLRRDGDAAVLELEDTGAGI-PDEVRGRI 1461

Query: 168  VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +      +    V  +   +   +            +    
Sbjct: 1462 FEPFFTTKASGTGLGLAVVRRIVEGHGGEVTVTSRPGAGTAFALRFP 1508


>gi|160887321|ref|ZP_02068324.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
 gi|156107732|gb|EDO09477.1| hypothetical protein BACOVA_05339 [Bacteroides ovatus ATCC 8483]
          Length = 657

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 59/220 (26%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +  + ++  + + H+I +P+ AI    E++   +    + E +++I+ +S   +  +  
Sbjct: 299 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTEGEEEKREYLEIIQRNSNLLLQLIND 358

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                        + F        +  +  + Q+        K ++              
Sbjct: 359 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 418

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            ++L N    A  +  +G        +        +   G      +             
Sbjct: 419 MQVLFNFLSNAIKNTEKGSITLGLKHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKLND 477

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +      R+          V +  L 
Sbjct: 478 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSVFALYLP 517


>gi|78043472|ref|YP_360244.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995587|gb|ABB14486.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 488

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + + H++ +P+  I    E L +     E    + ++     A                 
Sbjct: 260 ANVSHELRTPLTIIQGYTEALLDGIVTDEKIREEHLKNILQEAERLKAMANELLDLASIE 319

Query: 78  D------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM- 124
           +            +             F      +++    +   +  +R+K+L  +   
Sbjct: 320 EGREKLKFEKIDLANFAQDCFNAFKTQFFEKGIELELEVNVQDGKVVGDRSKLLRVVGNL 379

Query: 125 --VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179
              A    P GGKV   V + + +    +K +G      +    F +    +   +    
Sbjct: 380 LSNALKFTPAGGKVKFEVIEGEKDYQIHVKDSGPGIPEQDLEKIFERFYKVDKARSSKGF 439

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +       +   +  ++      +     + +L K
Sbjct: 440 GLGLAITKSIVEAHGGQIFARNNPEGGAKFTVVLPK 475


>gi|307718246|ref|YP_003873778.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM
           6192]
 gi|306531971|gb|ADN01505.1| phosphate regulon sensor protein PhoR [Spirochaeta thermophila DSM
           6192]
          Length = 463

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 58/218 (26%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             S + H++ +PI  +   LE L     D+       ++     +      ++ +     
Sbjct: 246 FVSSVSHELKTPITTVLGYLETLKDLPPDDEATRTRFLETALSHTHRLHQIIEDLLLLSR 305

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLNL 122
                A            +    +++         + +    +           + L NL
Sbjct: 306 IEQAEAPVPLERAPLAPLIRRAVELVRQARGETHPLTLEGPEDLALPLNPGLMVQALYNL 365

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
              A    P G  V +  + + +  +  ++  G     PE   +I +             
Sbjct: 366 IHNALTHTPPGTPVVVRWRSTGSSVLIQVEDRGPGI-PPEALPRIFERFYRVDTSRSRAT 424

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +K  +       H    +  L 
Sbjct: 425 GGTGLGLSIVKHIVQAHKGTIDVHSTPGHGTTFTIRLP 462


>gi|306825162|ref|ZP_07458504.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432598|gb|EFM35572.1| sensor histidine kinase VicK [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 449

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 70/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + D V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    T                L   +++          +   +    + +  +     +
Sbjct: 271 IDNATTKLDIELINFTAFITFILNRFDKMRNQDEEKKYELVRDYPITSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T+S++ + ++ I S+   G      +   +I D        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++   +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|317152724|ref|YP_004120772.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942975|gb|ADU62026.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 565

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 79/238 (33%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIEDEVMQLIR 54
           M+K +   + +  L ++  L + I H+I +P+  +      + +LL++ G E    Q I+
Sbjct: 320 MSKQM---IEAGKLASIGELAAGIAHEINNPVAIMMEEAGWIGDLLEDEGTEMSCRQEIQ 376

Query: 55  -----------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQV 102
                               L F R       +V     + ++  + ++          +
Sbjct: 377 RALAQVRTQGVRCKDITHKLLSFARQTDSRVTTVVLPELIEEVVSLSMQQARYAQIDFSL 436

Query: 103 SWTGEKIDL---SRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLA 158
               +   +     E  ++ LNL   +  ++ +  G + IS   ++NE + S+   G   
Sbjct: 437 DIDADMPPIEASPTELQQVFLNLINNSIQAMEQDGGTLAISCHQTENEVLISVADTGPGI 496

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I D    +        +       + H+    +  E    H    +  L 
Sbjct: 497 PEAYLS-RIFDPFFTTKPVGKGSGLGLSICFGIIHQMGGTIEVESAVGHGTRFNIRLP 553


>gi|42784659|ref|NP_981906.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
 gi|42740591|gb|AAS44514.1| sensory box histidine kinase YycG [Bacillus cereus ATCC 10987]
          Length = 613

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   I   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWIDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|306829563|ref|ZP_07462753.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249]
 gi|304428649|gb|EFM31739.1| sensor histidine kinase VicK [Streptococcus mitis ATCC 6249]
          Length = 449

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + D V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117
           +    T     LI        I +     +                 +      + +  +
Sbjct: 271 IDNATTQLDVELINFTAFITFILNRFDKMRSQDDEKKYELVRDYPINSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172
           ++ N+   A    P GGK+T+S++ + ++ I S+K  G      +    F +        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|228988692|ref|ZP_04148778.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771143|gb|EEM19623.1| hypothetical protein bthur0001_53470 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 588

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   ++  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQNPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|257060401|ref|YP_003138289.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590567|gb|ACV01454.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 507

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 69/203 (33%), Gaps = 11/203 (5%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           H++ +PI  I   LEL+ D+   + E + L+          +  + L             
Sbjct: 294 HELRTPITIIRGHLELMGDDPQDQQETISLVLDELDRMARLVDDLSLLAKAERPDFLQRE 353

Query: 83  LGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           + DI    E+         +    ++    G+ +   +   + ++NL   A        +
Sbjct: 354 MIDISDFTEELYLKAIGLKSRHWLLENKAKGQLMIDRQRITQAIMNLAQNASQHTRESDQ 413

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
           +TI   +  +     +K  G      +    F + V  NV S+ +   +    V  +A  
Sbjct: 414 ITIGSTEDNHFIRLWVKDTGQGINKQDQQRIFNRFVRLNVRSSSEGSGLGLSIVKAIAEA 473

Query: 193 NKIRLLPEIIDDHNVVLSALLEK 215
           +  R+          + + +L K
Sbjct: 474 HGGRVELISEIGEGSIFTIILPK 496


>gi|319640176|ref|ZP_07994902.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|317388163|gb|EFV69016.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 820

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     +  Q + +   +  
Sbjct: 584 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 641

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                          D  +   +I + +   +     +          
Sbjct: 642 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVPAGVELVFEECLPGCH 701

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  ++    +++ N    A      G       + +     F ++  G      +  T  
Sbjct: 702 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 761

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       L  +    +  E  +           
Sbjct: 762 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 809


>gi|94970530|ref|YP_592578.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
 gi|94552580|gb|ABF42504.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
          Length = 1043

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            +++        +     S + H++ +P+ +I  SL LL       +    D ++ +   +
Sbjct: 785  QDVTKRREVDRMKNEFISVVSHELRTPLTSIRGSLGLLAGGALRKDPEKADRMLDIALKN 844

Query: 57   SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +   +  +                    +D+   +      +      +K    + +   
Sbjct: 845  TERLVRLINDILDIEKIESGNIALNVQPLDAADLISQASATMHAMADANKVRLETHSTRG 904

Query: 109  --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                      + L NL   A         VTIS Q      +  ++  G      +    
Sbjct: 905  ILYADRDRMLQTLTNLLSNAIKFSKPDNTVTISSQRRGGGLLIRVRDQGRGIPSNKLQTI 964

Query: 164  FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +    +           +       +  ++   +  + ID        LL +
Sbjct: 965  FERFQQVDASDSRDKGGTGLGLAICRSIVQQHGGSIWVDSIDGKGSEFFILLPR 1018


>gi|42523019|ref|NP_968399.1| pilS sensor protein [Bdellovibrio bacteriovorus HD100]
 gi|39575224|emb|CAE79392.1| pilS sensor protein [Bdellovibrio bacteriovorus HD100]
          Length = 525

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 72/221 (32%), Gaps = 16/221 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRL 64
            +  L A+  L + I H+I +P+  I  S+ELL +      + ++M+++          +
Sbjct: 304 QNEKLAAVGGLAAGIAHEIRNPLAGISGSIELLTQTVNNDDDRKLMKIVLREIDRLNNLI 363

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------LSRERA 116
                           + L  +   + D + ++ +V+      +             +  
Sbjct: 364 TEFLDYARPEVPPTDAVDLSSLLTEVLDSMKLNAQVRADVEQVREYEAGLKILGRRDKLK 423

Query: 117 KILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
           +  LN+ + ++ ++    K  I+V+   +  E    ++  G       +  ++ +    +
Sbjct: 424 QAFLNIIINSYQAMNDSQKPQIAVKALVTDKEVRVRIRDAGCGMSEATRK-KMFEPFHTT 482

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +       +   +  ++  E              +
Sbjct: 483 KPKGTGLGLAVTHKILEGHGAQVFVESEVGVGTEFILTFPR 523


>gi|315185742|gb|EFU19509.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 785

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     + S+   +   + + H+I +P+  I    ELL++  +++E    ++    S 
Sbjct: 126 LRKEREEAIRSVQSKSRFLANMSHEIRTPLHTILGMTELLEDTRLDEEQRDYVQQIRFSG 185

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 M +       V          Q  +  + V   +    
Sbjct: 186 EALLALINDILDYSKIEAGKLPMEIIDFDLYEVVEQAVGMVSLQAHKKHLEVVVDIGEEV 245

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                       +IL+NL   A     +G          +        F+++  G     
Sbjct: 246 PRRVKGDPLRIRQILVNLANNAVKFTEKGHVFCRVQLVQQRKGVAWVAFTVEDTGIGIPE 305

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +K       +              +       L    K  +     +        LL 
Sbjct: 306 NKKHRLFRVFSQIDESTTRRFGGTGLGLAISKSLVEMMKGEIGVRSREGEGSSFWFLLP 364


>gi|239617944|ref|YP_002941266.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506775|gb|ACR80262.1| PAS/PAC sensor signal transduction histidine kinase [Kosmotoga
           olearia TBF 19.5.1]
          Length = 417

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 31/239 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M +N+        +     S + H++ +P+ +IH   E L      +     + +++I  
Sbjct: 179 MERNLEL------MRREFVSNVSHELRTPLTSIHGYAETLLEYDLSDEETVRKFLRIIEG 232

Query: 56  SSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S      +  +                     +    +  I   + + + V     +  
Sbjct: 233 ESARMTRLINDLLDLEKLEAGDIQLVLEDVELSEVGEYVIKIVSPLAEELGVSIYEDMER 292

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLAR- 159
                       ++ LNL   A             V I V  + N  +  ++  G     
Sbjct: 293 GVFVEGDFDRLVQLTLNLVDNAVKYTSVKEHGPKEVWIRVYTANNYAVLEVEDTGIGIPE 352

Query: 160 --FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 F +    +      +    +    V L+A ++   +  +    +       L 
Sbjct: 353 EARKHIFERFYRVDKARSRKMGGTGLGLAIVKLIAEKHGGTVSLDSEFGNGTTFKVRLP 411


>gi|150399364|ref|YP_001323131.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150012067|gb|ABR54519.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 641

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 71/240 (29%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51
           A+ +  +   +     L + L + + H++ +P+ +I   +EL+ +         + + +Q
Sbjct: 393 AEELKESYEELKELDNLKSDLIAIVSHELRTPLTSIKGYVELVLDGTMGTINESQRKCLQ 452

Query: 52  LIRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           +   + +     ++ M                           IE +       + +++ 
Sbjct: 453 VADDNIIRLRRLIESMLDLSKIERGELEMYREAMNVKDTVSDVIEYLTPLATEKNIKLKQ 512

Query: 103 SW-TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF 160
                          ++  NL   A    P    + I  ++++N +   ++K NG     
Sbjct: 513 DIKDLLINADKDRITQVFTNLIENAIKFSPANESIMIIGKETENGDVHITVKDNGAGIPK 572

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I D   +             +       +   +   +  E           +L 
Sbjct: 573 KDL-EKIFDQFYQVDSSTKRKKGGSGLGLAVCKSIIQAHGGTIWVESELGRGSTFHIVLP 631


>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1627

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56
            +++        +     S + H++ +P+ +IH SL +L       +      ++++   S
Sbjct: 1110 RDVTERKQIERMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLSADSEQGKRLLEIATDS 1169

Query: 57   SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTG 106
            +   +  +                   S D    +     +++             S + 
Sbjct: 1170 TERLVRLINDILDIERIESGRVKMERESCDLSDLIESAVSIMQPLANKAGVKLSVSSPSI 1229

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +         + L NL   A         V +  Q   +E + ++K NG      +    
Sbjct: 1230 QLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQHYGDELLLTVKDNGRGIPADKLDSI 1289

Query: 164  FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +       D   +       +  ++  R+  E +          L 
Sbjct: 1290 FERFQQVDSSDSRNHDGTGLGLAICQSIIQQHGGRIWAESVLGEGSNFYFTLP 1342


>gi|291295488|ref|YP_003506886.1| histidine kinase [Meiothermus ruber DSM 1279]
 gi|290470447|gb|ADD27866.1| histidine kinase [Meiothermus ruber DSM 1279]
          Length = 473

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           + K++   LS ++          +   H++ +P+ AI   +  L         + E +++
Sbjct: 232 LVKSLNRMLSRLESAWETQGRFLADASHELRTPVTAILGHVNYLLRRTQITEQQRESLEI 291

Query: 53  IRLSSMSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           I+  S      +  +              GSV     L +IE+           VQ    
Sbjct: 292 IKRESERMQKLVGDLLELSKTGGSWKIELGSVHLKTVLNEIEEEYSKSFEGQIEVQAPEH 351

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
              +       +++ NL   A  +     ++           +  ++ NG        P 
Sbjct: 352 VWVLGDPERLHQVMANLVSNAIKAGATRIRLIALDL--AERVVIRVEDNGEGISKEHLPH 409

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +    +           +    V  +   +   +  E       V S  L+K
Sbjct: 410 LFERFYRVDKARDRARGGSGLGLAIVRSIVEAHGGHVWAESEPGKGSVFSISLKK 464


>gi|15903149|ref|NP_358699.1| sensory box sensor histidine kinase [Streptococcus pneumoniae R6]
 gi|116515922|ref|YP_816555.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39]
 gi|148985121|ref|ZP_01818360.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP3-BS71]
 gi|148989248|ref|ZP_01820628.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP6-BS73]
 gi|148998656|ref|ZP_01826095.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP11-BS70]
 gi|149007116|ref|ZP_01830785.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP18-BS74]
 gi|149012277|ref|ZP_01833346.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP19-BS75]
 gi|149019218|ref|ZP_01834580.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484878|ref|ZP_02709823.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00]
 gi|168486548|ref|ZP_02711056.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00]
 gi|168491147|ref|ZP_02715290.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04]
 gi|168493148|ref|ZP_02717291.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06]
 gi|168577195|ref|ZP_02723004.1| sensor protein YycG [Streptococcus pneumoniae MLV-016]
 gi|169833288|ref|YP_001694657.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6]
 gi|182684046|ref|YP_001835793.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           CGSP14]
 gi|221231921|ref|YP_002511073.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669]
 gi|225854692|ref|YP_002736204.1| sensor protein YycG [Streptococcus pneumoniae JJA]
 gi|225856893|ref|YP_002738404.1| sensor protein YycG [Streptococcus pneumoniae P1031]
 gi|225859007|ref|YP_002740517.1| sensor protein YycG [Streptococcus pneumoniae 70585]
 gi|225860940|ref|YP_002742449.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14]
 gi|237649928|ref|ZP_04524180.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974]
 gi|237822523|ref|ZP_04598368.1| sensor protein YycG [Streptococcus pneumoniae CCRI 1974M2]
 gi|298230883|ref|ZP_06964564.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19F]
 gi|298254364|ref|ZP_06977950.1| sensor protein YycG [Streptococcus pneumoniae str. Canada MDR_19A]
 gi|298502778|ref|YP_003724718.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|307067875|ref|YP_003876841.1| signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|307127186|ref|YP_003879217.1| sensor protein YycG [Streptococcus pneumoniae 670-6B]
 gi|15458731|gb|AAK99909.1| Histidine kinase [Streptococcus pneumoniae R6]
 gi|116076498|gb|ABJ54218.1| sensory box sensor histidine kinase [Streptococcus pneumoniae D39]
 gi|147755493|gb|EDK62541.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP11-BS70]
 gi|147761420|gb|EDK68386.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP18-BS74]
 gi|147763603|gb|EDK70538.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922566|gb|EDK73684.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP3-BS71]
 gi|147925226|gb|EDK76305.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP6-BS73]
 gi|147931088|gb|EDK82067.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP23-BS72]
 gi|168995790|gb|ACA36402.1| sensor protein YycG [Streptococcus pneumoniae Hungary19A-6]
 gi|172041979|gb|EDT50025.1| sensor protein YycG [Streptococcus pneumoniae CDC1873-00]
 gi|182629380|gb|ACB90328.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           CGSP14]
 gi|183570459|gb|EDT90987.1| sensor protein YycG [Streptococcus pneumoniae CDC1087-00]
 gi|183574369|gb|EDT94897.1| sensor protein YycG [Streptococcus pneumoniae CDC0288-04]
 gi|183576651|gb|EDT97179.1| sensor protein YycG [Streptococcus pneumoniae CDC3059-06]
 gi|183577215|gb|EDT97743.1| sensor protein YycG [Streptococcus pneumoniae MLV-016]
 gi|220674381|emb|CAR68931.1| sensor histidine kinase [Streptococcus pneumoniae ATCC 700669]
 gi|225721122|gb|ACO16976.1| sensor protein YycG [Streptococcus pneumoniae 70585]
 gi|225723105|gb|ACO18958.1| sensor protein YycG [Streptococcus pneumoniae JJA]
 gi|225725453|gb|ACO21305.1| sensor protein YycG [Streptococcus pneumoniae P1031]
 gi|225728161|gb|ACO24012.1| sensor protein YycG [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238373|gb|ADI69504.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|301794309|emb|CBW36734.1| sensor histidine kinase [Streptococcus pneumoniae INV104]
 gi|301800147|emb|CBW32752.1| sensor histidine kinase [Streptococcus pneumoniae OXC141]
 gi|301801918|emb|CBW34642.1| sensor histidine kinase [Streptococcus pneumoniae INV200]
 gi|306409412|gb|ADM84839.1| Signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|306484248|gb|ADM91117.1| sensor protein YycG [Streptococcus pneumoniae 670-6B]
 gi|327389462|gb|EGE87807.1| sensory box protein [Streptococcus pneumoniae GA04375]
 gi|332074836|gb|EGI85308.1| sensory box protein [Streptococcus pneumoniae GA41301]
 gi|332201689|gb|EGJ15759.1| sensory box protein [Streptococcus pneumoniae GA47368]
          Length = 449

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T+ ++ ++++ I S+  +G      +   +I D        
Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|15901088|ref|NP_345692.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           TIGR4]
 gi|111657844|ref|ZP_01408559.1| hypothetical protein SpneT_02000967 [Streptococcus pneumoniae
           TIGR4]
 gi|5830524|emb|CAB54569.1| histidine kinase [Streptococcus pneumoniae]
 gi|14972707|gb|AAK75332.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           TIGR4]
          Length = 449

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T+ ++ ++++ I S+  +G      +   +I D        
Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|324325451|gb|ADY20711.1| sensor histidine kinase; possible sporulation kinase [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 498

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 393 KDHMKQVVLNITKNAIEAMTSGDTLTIFVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +    I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 494


>gi|307299069|ref|ZP_07578871.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915494|gb|EFN45879.1| multi-sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 935

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 63/236 (26%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +  + +   + + H++ +P+ AI    ELL       E M+ ++    S 
Sbjct: 322 LRKVSKEAQQASKMKSEFLANMSHEMRTPMNAILGFAELLMNDETNLEKMKYLKTIYRSG 381

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 + ++      +   I    +       +     +    
Sbjct: 382 EHLLSLINDVLDLSKIEAARFDLIISPYSPAKLVKEITETYLPMAYSKGLHFANSITERV 441

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++L NL         + G V++ +    +  I++++  G+     E  
Sbjct: 442 PEYVDGDEFRVRQVLTNLVSNGLKFTDK-GYVSVLLDYDGHHLIYTVQDTGSGVSREEI- 499

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +        +        +       +       +  E        ++  + 
Sbjct: 500 DKIFEPFIQADGTMSRKFGGTGLGLTITKKIVELMGGSIRFESKVGEGSKVTVRIP 555


>gi|322387745|ref|ZP_08061354.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779]
 gi|321141612|gb|EFX37108.1| sensor histidine kinase VicK [Streptococcus infantis ATCC 700779]
          Length = 449

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYEPVAPDFIKVSLNETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAK 117
           +    +     LI        I +     +                 +      + +  +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMRSQDQEKKYELVRDYPITSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GGK+T++++ + ++ I S+   G      +    F +    +   
Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKEDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|309809785|ref|ZP_07703639.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
 gi|308169964|gb|EFO72003.1| PAS domain S-box protein [Lactobacillus iners SPIN 2503V10-D]
          Length = 612

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 67/239 (28%), Gaps = 34/239 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56
            KN               S + H++ +P+ ++   +E L++   ++     + + +I+  
Sbjct: 368 QKNENEQRQ-------FVSNVSHELRTPLTSLRAYVEALNDGAWKNENIAPQFLGVIQNE 420

Query: 57  SMSAIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   I  +                 +            L     + +         +R+ 
Sbjct: 421 TERMIRMINDLLNLSRMDRGVVKMDLEWVNLNDFLSHILNRFDMMLKNDGVKKYKIRRIF 480

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     + +  +++ N+   A    P GG +TI +  +    I S+   G      
Sbjct: 481 PHQALWVEIDTDKMMQVIDNIMNNAIKYSPDGGLITIRLLQTHKHVILSISDQGLGIPRK 540

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D                 +       +   +  ++  +  + +       + 
Sbjct: 541 DLS-RIFDRFYRVDKARSRKQGGTGLGLAISKEIVEAHHGKIWADSSEGNGSTFYISIP 598


>gi|159905929|ref|YP_001549591.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
 gi|159887422|gb|ABX02359.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus maripaludis C6]
          Length = 613

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 21/223 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66
           DL + L S + H++ +P+ +I   ++LL +         + E + +I  +S         
Sbjct: 389 DLKSELISIVSHELRTPLTSIRGYIDLLKDETAGKLNEKQKEFVSVISENSERLKRITDN 448

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA 116
           M                 ++    + +I   ++ F      + +             +  
Sbjct: 449 MSDLVTVDNEHLNTKLDKLNIKNAVEEIVSSLQHFADSRNIILLEDVDDLYIKGDKSKIH 508

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           ++L NL   A        KVT++  +        +   G           F +    +  
Sbjct: 509 QVLANLIENAVKFSKTQTKVTVTGYEDNGNIHLEITDQGPGIPKEYLDKVFDRFYQIDSS 568

Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    +       +   +   +  E        +  L  
Sbjct: 569 SKRKIGGSGLGLAVCKKIVESHGGSIWVESRIGKGTNVHVLFP 611


>gi|89901515|ref|YP_523986.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89346252|gb|ABD70455.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 544

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 29/233 (12%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63
               L ++  L S I H++ +P+  +     L+     +   +   + L+   +      
Sbjct: 296 QGEKLASIGVLASGIAHELNNPLTGVLTFTSLMRKKAADGSEDAADLDLVIRETKRCASI 355

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           ++ +         V     L  +       V          +  +       +  +    
Sbjct: 356 IRRLLDFAREKVPVKGFFNLNLVIEDTVRFVERPASLQQIEITTALDPALPQVWGDADLI 415

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK------------NENIFSLKINGNLARFPEK 163
            +++LNL + A  ++   G + ++ +                    S+   G        
Sbjct: 416 KQVILNLLVNAQQAIEGKGNIKVASRLYPGMASDKPGVDTLPMVEISVTDTGCGIPPANL 475

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    S        +       +   +  ++  E +         LL 
Sbjct: 476 -ERIFDPFFTSKEVGKGTGLGLSVSYGIVKAHGGKINVESVVGEGTTFYVLLP 527


>gi|15644402|ref|NP_229454.1| sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|4982228|gb|AAD36721.1|AE001807_12 sensor histidine kinase HpkA [Thermotoga maritima MSB8]
 gi|1575578|gb|AAC44437.1| histidine protein kinase [Thermotoga maritima]
          Length = 412

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 74/228 (32%), Gaps = 26/228 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM 67
           ++     + + H++ +P+ +IH   E L E  +E+       +++I   S      +  +
Sbjct: 184 EMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTRLINDL 243

Query: 68  --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAK 117
                     A      VD    +  + ++I+     +    +                +
Sbjct: 244 LDLEKIEESEANFEMKDVDLCEVIEYVYRIIQPIAEENEVDLIVECEDVVVRGNKERLIQ 303

Query: 118 ILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +LLNL   A            KV +   D+ +  +  ++  G      E  ++I +    
Sbjct: 304 MLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVEDTGPGI-PKEAQSRIFEKFYR 362

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    +    V  +  ++  ++  E   +   ++  LL K
Sbjct: 363 VDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTLMRVLLPK 410


>gi|297530186|ref|YP_003671461.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297253438|gb|ADI26884.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 430

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 70/224 (31%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +A+     +  M +V+ + + I H+I +P+  +   ++LL         E+  +++    
Sbjct: 193 LARAELMKMEKMQIVSQMAASISHEIRNPLTVVKGFIQLLQTGRLPRETEERYIRIALEE 252

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111
              A   ++               I +          +          V  S     +  
Sbjct: 253 LERAEAIIRDYLTFAKPAPKETEPIDVATQLQKVLQMITPMAHMHSIHVSSSLEHGVVIG 312

Query: 112 SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           + +  +    NL   +  ++P GG + ++ ++     + ++  NG      E+  +  + 
Sbjct: 313 NVQYFQQCFLNLLKNSIEAMPNGGTLHVAAENRGASVVITISDNGVGM-TKEQVRRFGEP 371

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +     + +  +       E        L+  L 
Sbjct: 372 YFSTKEKGTGLGAMVAVKIIEQMGGTWTIESAVQKGTTLTITLP 415


>gi|255009439|ref|ZP_05281565.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313147205|ref|ZP_07809398.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313135972|gb|EFR53332.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 633

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 62/230 (26%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  L +   + I H+I +P+ AI    +LL   D+   ++E  Q I+ ++
Sbjct: 396 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRQTIQKNN 455

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
           +  +     +                 V        + Q ++D +     +++       
Sbjct: 456 VLLLQLFSDIIDLSKIDAGSFEYMPKPVYLYQFCAMMLQKMKDRVPEGVELRIDEDSPLD 515

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    +++ N    A     RG        D+  +    ++  G       +  
Sbjct: 516 AWFNADSGYLNQVITNFVSNAIKFTHRGTITIGYQIDAARQLEMFVEDTGIGISAENQTA 575

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +       +  +   R+               L 
Sbjct: 576 VFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGRIGVTSEFGKGSRFWFTLP 625


>gi|108759200|ref|YP_633189.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463080|gb|ABF88265.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 515

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 76/237 (32%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           +       + +  L A+  + ++I H++ +P+ +I  ++ELL +              EV
Sbjct: 279 LKAQAEALMRAEQLAAVGRISAQIVHEVRNPLSSIGLNVELLQDGFETARFATPEDAAEV 338

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQ 101
             LI   +                       +   D+  V         E+       V 
Sbjct: 339 KDLISAVTQEVDRLADVTEQYLRMARPPRPDLDPRDVTAVLDTVLDFTREELERAGVEVV 398

Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             +  +   +  +     ++ LNL   +  ++P GG++TI  + +++    +++  G   
Sbjct: 399 RDFALDTPHVLADEGQLRQVFLNLLRNSREAMPSGGRLTIVTRPAEDAVEVTVRDTGQGM 458

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   ++ +    +      +       +   +   L  + I          L +
Sbjct: 459 -TEDIRQRLFEPFFTTKEGGTGLGLAVSQQILQVHGGSLSCQSIPGQGTAFVLRLPR 514


>gi|254881166|ref|ZP_05253876.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254833959|gb|EET14268.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 809

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     +  Q + +   +  
Sbjct: 573 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 630

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                          D  +   +I + +   +     +          
Sbjct: 631 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCSEIIRSLRMKVPAGVELVFEECLPGCH 690

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  ++    +++ N    A      G       + +     F ++  G      +  T  
Sbjct: 691 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDTGMGIPKNKIKTVF 750

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       L  +    +  E  +           
Sbjct: 751 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 798


>gi|54309073|ref|YP_130093.1| putative sensor histidine kinase [Photobacterium profundum SS9]
 gi|46913505|emb|CAG20291.1| putative sensor histidine kinase [Photobacterium profundum SS9]
          Length = 681

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     ++S  L AL  L + I H+I +P   I  ++ELL     D+     E +  I
Sbjct: 431 LNQAKIKLVASEKLAALGELTAGIAHEINNPTAVILGNVELLQLELGDDTQRVKEELDAI 490

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSW 104
                      + +       G  D +        V E             V    Q+  
Sbjct: 491 HEQIDRIRNITRSLLQYSRQGGVQDEITWHHVNLIVEESLTLVRSGTKSYDVKVEAQLDA 550

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLA 158
                    +  ++L+NL M    ++   G + +  +D  ++       +  +  +G   
Sbjct: 551 KCCIEANRHQLLQVLINLQMNGVHAMDDKGLLKVKTEDWIDQSGKVLGAVVRVTDHGCGI 610

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E   +I +    +      +       +  E    +  +         S  L
Sbjct: 611 -SKENLKRIFNPFFTTRRSGTGLGLSVSQGIISEIGGEIEVQSELGKGSTFSIYL 664


>gi|319939369|ref|ZP_08013729.1| histidine kinase [Streptococcus anginosus 1_2_62CV]
 gi|319811355|gb|EFW07650.1| histidine kinase [Streptococcus anginosus 1_2_62CV]
          Length = 450

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVSDLLSLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKMIQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GGK+T+S++ +  + I S+   G      +    F +    +   
Sbjct: 331 VIDNIINNAIKYSPDGGKITVSMKTTDTQMILSISDEGLGIPKKDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGSGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|294495496|ref|YP_003541989.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666495|gb|ADE36344.1| integral membrane sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 575

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSS 57
           +N    L  +  +     S + H++ +P+ AI  S E L E       ++E++ LI  + 
Sbjct: 338 ENSNQRLQKLNRVKNEFLSMVSHELKTPLTAIRTSSEFLREEDYDRETQEEMLDLIIRNI 397

Query: 58  MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTG 106
                 +  +                 VD    + ++ Q++E            ++    
Sbjct: 398 DRQSRMVDDLLDISRIESGRMVFKEEKVDLKEIIDNVIQMMEPMATKHGIAIERELDNDP 457

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                  +  ++ +NL   A          + I  +++ +    S+   G      E   
Sbjct: 458 RVKADKDKLLRVFVNLLNNAIKFTADRGESIKIKTEETGDFVEISVIDKGIGIPENEQEK 517

Query: 163 KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +    +      +    +    +  +   +   +  +            L K
Sbjct: 518 IFEKFYQVDSTSRRKVGGSGLGLAIIKGIIEGHGGSIRVKSEPGVGSTFVFTLRK 572


>gi|228997617|ref|ZP_04157227.1| hypothetical protein bmyco0003_21910 [Bacillus mycoides Rock3-17]
 gi|229005218|ref|ZP_04162936.1| hypothetical protein bmyco0002_21570 [Bacillus mycoides Rock1-4]
 gi|228756029|gb|EEM05356.1| hypothetical protein bmyco0002_21570 [Bacillus mycoides Rock1-4]
 gi|228762126|gb|EEM11062.1| hypothetical protein bmyco0003_21910 [Bacillus mycoides Rock3-17]
          Length = 577

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +D+   L+     
Sbjct: 334 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINQEDQDKYFDLMLSEIE 393

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTG---EKID 110
                L                  L  I +     +    I  + ++ +           
Sbjct: 394 RIEAILHEFLSIAKTDVISTEKKNLCSILKNVVSLINTKAIMTNIQINLHIESKELMIDC 453

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I V+ S+ E  + ++   G      E+  ++ +
Sbjct: 454 CENQLKQVFINILQNSIEAMPNGGEISIYVKKSEREEVMINMVDEGVGI-PEERIKRLGE 512

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      I       +   ++ R+           ++  L 
Sbjct: 513 PFYSTKEKGTGIGLMLSYKIIESHQGRISIMSEVGIGTSVTIYLP 557


>gi|310823300|ref|YP_003955658.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396372|gb|ADO73831.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 522

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 80/233 (34%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + K +   + +  + A+  L   + H+I +P+G I    +L+         + E + LI 
Sbjct: 285 LTKRL---IETEKMAAVGQLAGGVAHEINNPLGGILAFAQLMKRDLGRSEADRESLDLIE 341

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVSWT---- 105
            S++     ++ +     ++   D         + D   + +  +  + RV++       
Sbjct: 342 ESALRCKRIVESLLKFSRHSKVEDRRHFELSKCVEDAAVLFKAQLKSNPRVKLELNLASG 401

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163
             +      + ++++LNL      +LP     + +      +   F++  +G+       
Sbjct: 402 LPKLFGDPAQLSQVVLNLLQNGLQALPSAEGTLKVDTGREGDRCFFAVADSGSGIEERYL 461

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I + +  +    +   +       +  ++      +    H    +  L 
Sbjct: 462 P-RIFEPSFTTKPPGEGTGLGLSIAYRIVQDHGGVFQVDTQVGHGSRFTVFLP 513


>gi|228961728|ref|ZP_04123332.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797963|gb|EEM44972.1| hypothetical protein bthur0005_51660 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|229148015|ref|ZP_04276354.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
 gi|228635440|gb|EEK91931.1| hypothetical protein bcere0012_51360 [Bacillus cereus BDRD-ST24]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|229082672|ref|ZP_04215130.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
 gi|229181711|ref|ZP_04309034.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228601744|gb|EEK59242.1| hypothetical protein bcere0005_50500 [Bacillus cereus 172560W]
 gi|228700638|gb|EEL53166.1| hypothetical protein bcere0023_52870 [Bacillus cereus Rock4-2]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|115377471|ref|ZP_01464673.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1]
 gi|115365515|gb|EAU64548.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1]
          Length = 464

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 80/233 (34%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + K +   + +  + A+  L   + H+I +P+G I    +L+         + E + LI 
Sbjct: 227 LTKRL---IETEKMAAVGQLAGGVAHEINNPLGGILAFAQLMKRDLGRSEADRESLDLIE 283

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVSWT---- 105
            S++     ++ +     ++   D         + D   + +  +  + RV++       
Sbjct: 284 ESALRCKRIVESLLKFSRHSKVEDRRHFELSKCVEDAAVLFKAQLKSNPRVKLELNLASG 343

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163
             +      + ++++LNL      +LP     + +      +   F++  +G+       
Sbjct: 344 LPKLFGDPAQLSQVVLNLLQNGLQALPSAEGTLKVDTGREGDRCFFAVADSGSGIEERYL 403

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I + +  +    +   +       +  ++      +    H    +  L 
Sbjct: 404 P-RIFEPSFTTKPPGEGTGLGLSIAYRIVQDHGGVFQVDTQVGHGSRFTVFLP 455


>gi|30023490|ref|NP_835121.1| two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206970358|ref|ZP_03231311.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218232571|ref|YP_002370240.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228942614|ref|ZP_04105146.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228955716|ref|ZP_04117711.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228975544|ref|ZP_04136096.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982180|ref|ZP_04142469.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|229072930|ref|ZP_04206126.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|229112878|ref|ZP_04242409.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|229130711|ref|ZP_04259664.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|229153623|ref|ZP_04281800.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|229193716|ref|ZP_04320657.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|296505893|ref|YP_003667593.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|29899051|gb|AAP12322.1| Two-component sensor kinase yycG [Bacillus cereus ATCC 14579]
 gi|206734935|gb|EDZ52104.1| sensory box histidine kinase YycG [Bacillus cereus AH1134]
 gi|218160528|gb|ACK60520.1| sensory box histidine kinase YycG [Bacillus cereus B4264]
 gi|228589741|gb|EEK47619.1| hypothetical protein bcere0002_53590 [Bacillus cereus ATCC 10876]
 gi|228629852|gb|EEK86504.1| hypothetical protein bcere0011_51520 [Bacillus cereus m1550]
 gi|228652728|gb|EEL08613.1| hypothetical protein bcere0015_51420 [Bacillus cereus BDRD-Cer4]
 gi|228670557|gb|EEL25870.1| hypothetical protein bcere0018_51150 [Bacillus cereus Rock1-15]
 gi|228710176|gb|EEL62154.1| hypothetical protein bcere0025_50900 [Bacillus cereus F65185]
 gi|228777532|gb|EEM25810.1| hypothetical protein bthur0002_53340 [Bacillus thuringiensis Bt407]
 gi|228784154|gb|EEM32181.1| hypothetical protein bthur0003_52880 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228803944|gb|EEM50568.1| hypothetical protein bthur0006_50640 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228817040|gb|EEM63133.1| hypothetical protein bthur0008_52410 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|296326945|gb|ADH09873.1| two-component sensor kinase yycG [Bacillus thuringiensis BMB171]
 gi|326943263|gb|AEA19159.1| two-component sensor kinase yycG [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|311281442|ref|YP_003943673.1| integral membrane sensor signal transduction histidine kinase
           [Enterobacter cloacae SCF1]
 gi|308750637|gb|ADO50389.1| integral membrane sensor signal transduction histidine kinase
           [Enterobacter cloacae SCF1]
          Length = 470

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 73/225 (32%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSM 58
                    LVAL  L + + H+I +P+ +I        E   E G   E+ +++   + 
Sbjct: 239 QEAMNRKEKLVALGHLAAGVAHEIRNPLSSIKGIAKYFAERTPEGGEPHELARVMAKEAD 298

Query: 59  SAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKID 110
                    L+ ++ A     SVD    +    Q++           +            
Sbjct: 299 RLNRVVSELLELVKPAHLALQSVDLNEVIAHSLQLVSQDAQSREIALRYTPNPGLCRIEA 358

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                 ++LLNL++ A  ++ R       + +        +++ +G     PE+   I  
Sbjct: 359 DPDRLTQVLLNLYLNAIHAIGRQGTIEVEARECDGQRVKIAVRDSGKGI-APEQLQAIFT 417

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +    V  +  ++   +    +  +  V +  L 
Sbjct: 418 PYFTTKAEGTGLGLAVVQNIIEQHGGTIQATSVVGNGAVFTLYLP 462


>gi|303258861|ref|ZP_07344840.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP-BS293]
 gi|303261545|ref|ZP_07347492.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264215|ref|ZP_07350135.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS397]
 gi|303266154|ref|ZP_07352047.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS457]
 gi|303268119|ref|ZP_07353919.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS458]
 gi|302637125|gb|EFL67613.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639804|gb|EFL70260.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP-BS293]
 gi|302642336|gb|EFL72683.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS458]
 gi|302644324|gb|EFL74578.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS457]
 gi|302646027|gb|EFL76254.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           BS397]
          Length = 449

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T+ ++ ++++ I S+  +G      +   +I D        
Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDCFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|226310516|ref|YP_002770410.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093464|dbj|BAH41906.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 478

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 60/218 (27%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAF--- 71
           + + H++ +P+ AI   LE L +          +   ++   +M     +  +       
Sbjct: 257 ANVSHELRTPLTAIQGFLEALQDGLVEEEEARQKYYAVMYTETMQVNRLVDDLMDLMKLE 316

Query: 72  --------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNL 122
                         D +  +        +   +   V+V     +I   ++R  +IL NL
Sbjct: 317 NNEVNLVKFPVDVADVMNRVAFSFHQEAEEKGLHMGVEVEDELPRIYADKDRIAQILKNL 376

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177
              A      G     +  D        +   G      +    + +    +   + +  
Sbjct: 377 VKNALKFTSAGEIRMRASLD-GEYVQIQVIDTGMGIAADDLDRIWERFFKVDRGRSKNNK 435

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +  +   E         +  L +
Sbjct: 436 GTGLGLAIVKELVELHDGKCRVESSPGKGSTFTIWLPR 473


>gi|254761651|ref|ZP_05213671.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           Australia 94]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|254724123|ref|ZP_05185908.1| sensory box histidine kinase YycG [Bacillus anthracis str. A1055]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|229035123|ref|ZP_04189069.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271]
 gi|228728189|gb|EEL79219.1| hypothetical protein bcere0028_51490 [Bacillus cereus AH1271]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|228918077|ref|ZP_04081605.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930471|ref|ZP_04093471.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936745|ref|ZP_04099536.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228949187|ref|ZP_04111455.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229124968|ref|ZP_04254142.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228658469|gb|EEL14135.1| hypothetical protein bcere0016_52450 [Bacillus cereus 95/8201]
 gi|228810470|gb|EEM56823.1| hypothetical protein bthur0007_53070 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228822954|gb|EEM68795.1| hypothetical protein bthur0009_51800 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829190|gb|EEM74827.1| hypothetical protein bthur0010_51490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841557|gb|EEM86673.1| hypothetical protein bthur0012_52730 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|229159025|ref|ZP_04287081.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
 gi|228624444|gb|EEK81215.1| hypothetical protein bcere0010_51960 [Bacillus cereus ATCC 4342]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|229176140|ref|ZP_04303633.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
 gi|228607375|gb|EEK64704.1| hypothetical protein bcere0006_52080 [Bacillus cereus MM3]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|229094576|ref|ZP_04225643.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
 gi|229187694|ref|ZP_04314830.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228595762|gb|EEK53446.1| hypothetical protein bcere0004_52250 [Bacillus cereus BGSC 6E1]
 gi|228688823|gb|EEL42654.1| hypothetical protein bcere0021_52790 [Bacillus cereus Rock3-42]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|229142214|ref|ZP_04270738.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
 gi|229199594|ref|ZP_04326255.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228583999|gb|EEK42156.1| hypothetical protein bcere0001_50920 [Bacillus cereus m1293]
 gi|228641232|gb|EEK97539.1| hypothetical protein bcere0013_52990 [Bacillus cereus BDRD-ST26]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|251799232|ref|YP_003013963.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247546858|gb|ACT03877.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 490

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 76/230 (33%), Gaps = 19/230 (8%)

Query: 2   AKNICFNLSSMDL-VAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            KNI   L   ++  AL  L   + H+I +P+  I   ++LL E      + +  R   +
Sbjct: 259 RKNIEKMLRLSEMNAALGELAVGVAHEIRNPLTGIRGFVQLLGETLKRYGIEKEQRYVDL 318

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
                 +   L               +   +++    +   +QV      I +       
Sbjct: 319 IQTELSRINDLVSEMLWLRKPKESSMETIDMLKLVNDILPLIQVDTNMNNIQMDTYGVVA 378

Query: 116 -----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +++LNL   +  ++  GG++ + ++++ +     ++ +G     P+  
Sbjct: 379 GRSIKANVALLKQVILNLCKNSIEAMESGGRLVLGLREADHTVTLFVQDSGPGI-PPDVM 437

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++      +    + +  +    +  E    L  +       V+S    
Sbjct: 438 DKLFTPFFTTKQSGNGLGLFISKQIIVEMGGELTIQTGLP-GTVVSVTFP 486


>gi|190568905|ref|ZP_03021807.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
 gi|190559972|gb|EDV13955.1| sensory box histidine kinase YycG [Bacillus anthracis
           Tsiankovskii-I]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|167636243|ref|ZP_02394546.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
 gi|167528358|gb|EDR91129.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0442]
          Length = 611

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 384 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 443

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 444 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 503

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 504 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 562

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 563 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 601


>gi|206975846|ref|ZP_03236757.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97]
 gi|217962958|ref|YP_002341536.1| sensory box histidine kinase YycG [Bacillus cereus AH187]
 gi|222098942|ref|YP_002533000.1| sensory box histidine kinase yycg [Bacillus cereus Q1]
 gi|206745940|gb|EDZ57336.1| sensory box histidine kinase YycG [Bacillus cereus H3081.97]
 gi|217065919|gb|ACJ80169.1| sensory box histidine kinase YycG [Bacillus cereus AH187]
 gi|221243001|gb|ACM15711.1| sensory box histidine kinase YycG [Bacillus cereus Q1]
 gi|324329416|gb|ADY24676.1| sensory box histidine kinase YycG [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|121535347|ref|ZP_01667159.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306039|gb|EAX46969.1| PAS/PAC sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 664

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 65/224 (29%), Gaps = 28/224 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV--------------GIEDEVMQLIRLSSMSAII 62
            L + + H++ +P+ AI    E+L +                I D    L+ + +    +
Sbjct: 428 FLAA-MSHELRTPLNAIMGFSEVLLDQHFGPLNDKQQVYVNDILDSARHLLEIINDVLDL 486

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAK 117
                     Y  +VD    L     +I+D  A         V      +     R   +
Sbjct: 487 AKLNAGKTNFYPETVDIAKLLRQTLGIIKDRAAAKNIAVELAVDAGVPPQVQVDVRRFKQ 546

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           I+ NL   A    P GG + +  +D+      S++  G           I +        
Sbjct: 547 IMYNLLSNAVKFTPDGGAIKVECRDAGEWLEISVEDTGIGIAATHA-EHIFEPFYQVSGN 605

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSALLE 214
             +      +       L   +  R+  E          + +L 
Sbjct: 606 LTAKTPGTGLGLAITRQLVELHGGRIWLERSEPGQGSRFTFVLP 649


>gi|118480493|ref|YP_897644.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196041968|ref|ZP_03109255.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99]
 gi|196045450|ref|ZP_03112681.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108]
 gi|225867446|ref|YP_002752824.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102]
 gi|300118834|ref|ZP_07056554.1| sensory box histidine kinase YycG [Bacillus cereus SJ1]
 gi|301056939|ref|YP_003795150.1| sensory box histidine kinase YycG [Bacillus anthracis CI]
 gi|118419718|gb|ABK88137.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|196023657|gb|EDX62333.1| sensory box histidine kinase YycG [Bacillus cereus 03BB108]
 gi|196027223|gb|EDX65843.1| sensory box histidine kinase YycG [Bacillus cereus NVH0597-99]
 gi|225789643|gb|ACO29860.1| sensory box histidine kinase YycG [Bacillus cereus 03BB102]
 gi|298723802|gb|EFI64524.1| sensory box histidine kinase YycG [Bacillus cereus SJ1]
 gi|300379108|gb|ADK08012.1| sensory box histidine kinase YycG [Bacillus cereus biovar anthracis
           str. CI]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|49481209|ref|YP_039455.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|196036107|ref|ZP_03103507.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218906657|ref|YP_002454491.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
 gi|49332765|gb|AAT63411.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|195991274|gb|EDX55242.1| sensory box histidine kinase YycG [Bacillus cereus W]
 gi|218538378|gb|ACK90776.1| sensory box histidine kinase YycG [Bacillus cereus AH820]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|52145273|ref|YP_086730.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978742|gb|AAU20292.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|172058760|ref|YP_001815220.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991281|gb|ACB62203.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 812

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L S I H++ +P+ +I+   EL+ +  +     +    +  S   RL  +   F     +
Sbjct: 590 LVSTISHELRTPLSSIYGFTELMIQRDLPPHRQKKYLAAVHSETERLSLLINDFLDLQRM 649

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--------------ERAKILLNLF 123
           ++       E      +  D +   S +    D+                +  ++  NL 
Sbjct: 650 EANRQEYTFEPFDLLAMMKDLKQLHSLSSSSHDIRIFSEETVQIINGDSKKIRQLFGNLV 709

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNV--ESTIDS 178
             A    P GG + I V +  N    +L   G         E F +    +      I  
Sbjct: 710 NNAIKYSPDGGPIEIRVTEHNNRVTVALTDYGIGIPSSAMSELFQKFYRVDNSDTRQIGG 769

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A  +   +  E I+      +  L 
Sbjct: 770 TGLGLSICREIARAHDGEIHVESIEGQGSTFTVDLP 805


>gi|47568664|ref|ZP_00239361.1| histidin [Bacillus cereus G9241]
 gi|47554652|gb|EAL13006.1| histidin [Bacillus cereus G9241]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|30265483|ref|NP_847860.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47531051|ref|YP_022400.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188302|ref|YP_031555.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|65317446|ref|ZP_00390405.1| COG5002: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165872528|ref|ZP_02217161.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167641431|ref|ZP_02399681.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170689184|ref|ZP_02880381.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|170708650|ref|ZP_02899089.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|177651823|ref|ZP_02934406.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227818234|ref|YP_002818243.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229602903|ref|YP_002869674.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
 gi|254687094|ref|ZP_05150952.1| sensory box histidine kinase YycG [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735140|ref|ZP_05192850.1| sensory box histidine kinase YycG [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742151|ref|ZP_05199838.1| sensory box histidine kinase YycG [Bacillus anthracis str. Kruger
           B]
 gi|254755939|ref|ZP_05207971.1| sensory box histidine kinase YycG [Bacillus anthracis str. Vollum]
 gi|30260161|gb|AAP29346.1| sensory box histidine kinase YycG [Bacillus anthracis str. Ames]
 gi|47506199|gb|AAT34875.1| sensory box histidine kinase YycG [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182229|gb|AAT57605.1| sensory box histidine kinase YycG [Bacillus anthracis str. Sterne]
 gi|164711751|gb|EDR17295.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0488]
 gi|167510606|gb|EDR86002.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0193]
 gi|170126432|gb|EDS95320.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0389]
 gi|170666827|gb|EDT17593.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0465]
 gi|172082527|gb|EDT67591.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0174]
 gi|227004751|gb|ACP14494.1| sensory box histidine kinase YycG [Bacillus anthracis str. CDC 684]
 gi|229267311|gb|ACQ48948.1| sensory box histidine kinase YycG [Bacillus anthracis str. A0248]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVIQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|332977344|gb|EGK14129.1| sensor histidine kinase ResE [Desmospora sp. 8437]
          Length = 600

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 63/233 (27%), Gaps = 24/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58
                +    L     + + H++ +P+  +    E L +        + E+ ++I   S+
Sbjct: 360 TEERRMD--KLRKDFVANVSHELRTPLSMLQGYSEALLDDIAASPEDQREITRVIHDESL 417

Query: 59  SAIIRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                ++ +                               + +  +     +        
Sbjct: 418 RMGRLVRELLDLARMEAGHIRLEPSTVHVPELIRRVYRKFQAIAREEKVALQVDLPDGMD 477

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                  +  ++L NL   A    P GG+VT+    ++      ++  G+     +    
Sbjct: 478 PVQWDEDKVEQVLTNLTDNAIRHTPEGGRVTLRALFAEKGVQLIVEDTGSGIPQEDLPFV 537

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +A  +   +  +  +      +  L 
Sbjct: 538 FERFYKADKARTRGQGGTGLGLAIVKHIAEAHAGSVSVKSKEGEGTRFTVQLP 590


>gi|229542344|ref|ZP_04431404.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229326764|gb|EEN92439.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 606

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 70/234 (29%), Gaps = 25/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +    ++   +      + + H++ +P+  + + LE L      +  I  + + + +  
Sbjct: 367 TEQEKIDMERRE----FVANVSHELRTPLTTMRSYLEALTDGAWKDEKIAPQFLGVTQNE 422

Query: 57  SMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I  +  +            L   +   V+    + D  ++ +      KR   +  
Sbjct: 423 TERMIRLVNDLLKLSKMDSKDEHLNKEWVNFVEFFHHVIDRFEMAKQQNVTFKRKLPNTE 482

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                   +  ++L N+   A    P GG++T  +++   +   S+   G          
Sbjct: 483 IFVEIDEDKMTQVLYNIISNALKYSPEGGQITFKLRELNEKIEVSISDQGVGIPKENVKK 542

Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +      +    +       +   +   +     +     +   L 
Sbjct: 543 IFERFYRVDKARSRKLGGTGLGLAIAKEMVEMHGGSIWASSKEGKGTTIYFTLP 596


>gi|28377005|ref|NP_783897.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254555221|ref|YP_003061638.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300769136|ref|ZP_07079025.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|28269836|emb|CAD62733.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|254044148|gb|ACT60941.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|300493376|gb|EFK28555.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 624

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 67/225 (29%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-A 70
              S + H++ +P+ ++ + +E L      +  +    +++ +  +   I  +  +   +
Sbjct: 384 QFVSNVSHELRTPLTSLRSYIEALSDGAWKDPEVAPGFLKVTQEETDRMIRMINELLSLS 443

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRE 114
              +G+    + L +I ++    +     +                           + +
Sbjct: 444 RMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEIDTDK 503

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L N+   A    P GG VT  + ++ N+ I S+   G      +            
Sbjct: 504 FTQVLDNIMNNAIKYSPDGGVVTCRLLETHNQVIISISDQGLGIPRADLGHVFDRFFRVD 563

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +      R+  + ++         L 
Sbjct: 564 KARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLP 608


>gi|310823681|ref|YP_003956039.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396753|gb|ADO74212.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 530

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 70/227 (30%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57
           + +       +  L AL  L +++ H+I +P+ A+  S ++L  +   +  V++L  +  
Sbjct: 290 LRRAEDELRRADRLAALGTLAAQLAHEIRNPLAAMRGSAQMLAQDGAEDPSVVRLTNILL 349

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +    + +     +               L      +     + + V +S     +  
Sbjct: 350 RESDRLSRLVEEFLRFARPPPPQRRVAALDELIRETVEMLQADPLRRGVHLSLELRPVMA 409

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167
           S +  ++   L  +   +    G    +       ++ + + ++  +   A       +I
Sbjct: 410 SVDPDQLRQVLLNLLRNAFEAVGPEGRTRVSLSVSAEQKVLLAVWDS-AGAIPEAHLVRI 468

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +   ++ RL            +  L 
Sbjct: 469 FEPFFTTRSGGTGLGLATAYSIVRAHEGRLQVTSSPGSGTEFTVELP 515


>gi|270292777|ref|ZP_06198988.1| sensory box histidine kinase VicK [Streptococcus sp. M143]
 gi|270278756|gb|EFA24602.1| sensory box histidine kinase VicK [Streptococcus sp. M143]
          Length = 449

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + D V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALYDPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAK 117
           +    T     LI        I +     +                 +      + +  +
Sbjct: 271 IDNATTRLDVELINFTAFITFILNRFDKMRSQDEEKKYELVRDYPINSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNV 172
           ++ N+   A    P GGK+T+S++ + ++ I S+K  G      +    F +        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVSMKTTDDQMILSIKDQGLGIPKQDLPKIFDRFYRVDRAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 432


>gi|52079393|ref|YP_078184.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52784753|ref|YP_090582.1| hypothetical protein BLi00981 [Bacillus licheniformis ATCC 14580]
 gi|319646826|ref|ZP_08001055.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52002604|gb|AAU22546.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347255|gb|AAU39889.1| putative protein [Bacillus licheniformis ATCC 14580]
 gi|317391414|gb|EFV72212.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 674

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 71/225 (31%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--S 57
            ++    + S  L A+  L + I H+I +P+ ++   L+L+ +     +    + +S   
Sbjct: 448 KRSEKMLMKSEMLSAVGQLAAGIAHEIRNPLTSLKGFLQLMIQSKKYQKDYAEVMMSEFI 507

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115
               I  +F+ LA   + + D +     +E V     +      V    +      E   
Sbjct: 508 RLEAIINEFLVLAKTKSNTFDPVQVNSIVEDVCMVLESQAVLNNVRIEKQLSGDLPEILA 567

Query: 116 -----AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
                 ++ +N+   A  ++             + +    + +  G      E   ++ +
Sbjct: 568 VSNELKQVFINILKNAIEAMEDAEGFITIRSYFEKDSVFITFEDQGKGI-SKEVLEKLGE 626

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   +   +  E  +    ++   L 
Sbjct: 627 PFYTTKEKGTGLGLMVTFKIIENHGGSIHFESEEGKGTIVKLKLP 671


>gi|301059874|ref|ZP_07200765.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300446024|gb|EFK09898.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 441

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
           + ++    L +  + ++  L + + H I +P+ ++   L      L+    + +  ++I 
Sbjct: 206 LERSQETLLQAEKMASVGKLAAGMAHSIRNPLTSVKMRLFSLDRTLELSPAQQDDFEVIS 265

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKI 109
                    ++               I   +I  +          + +  V V       
Sbjct: 266 GEIRHIDTIVQNFLEFSRPPKLKTQKISPSEIVDLVLQLLHHRLESYNVTVTVERRQPLP 325

Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161
           ++  +  ++   L  +   +             +     +      +  +  +G   + P
Sbjct: 326 EIQVDPEQLKEALINILENACEAMEGGGSIVIHEEKGFREPHGPVAVIQITDSGPGIQKP 385

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++      S  +   +       +   +   L               L 
Sbjct: 386 -IQNKVFQPFFTSKEEGTGLGLSITSRIMESHGGSLELISESGKGATFVLTLP 437


>gi|261419733|ref|YP_003253415.1| histidine kinase [Geobacillus sp. Y412MC61]
 gi|261376190|gb|ACX78933.1| histidine kinase [Geobacillus sp. Y412MC61]
          Length = 470

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 56/231 (24%), Gaps = 19/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           ++I        + + L S + H++ +P+  I    ELL         + + +  I   + 
Sbjct: 231 RDITKQAEVDRMKSELVSTVSHELRTPLAGILGLAELLLNKPLAPERQRKYLTAIGQEAE 290

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EK 108
             +  +              +          I + I   +++                  
Sbjct: 291 RLMALINDFLDVQRMEAGRQTYRWEPVDLVPIMEKIIDAEKMGTDIHTFSVSVETKRTMI 350

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++  NL   A    P GG V I + +        ++  G             
Sbjct: 351 RGDRERLRQLFTNLVHNAVKYSPNGGAVVIRLYEHSGCLCVDVQDEGLGIPAEALPHIFE 410

Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       I    +    V  +A  +   +     +      +    
Sbjct: 411 KFFRVDNSDRRRIGGTGLGLTIVKEIAKAHGGEVTVVSEEKKGSTFTVRFP 461


>gi|239636842|ref|ZP_04677841.1| sensor protein ResE [Staphylococcus warneri L37603]
 gi|239597516|gb|EEQ80014.1| sensor protein ResE [Staphylococcus warneri L37603]
          Length = 586

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 60/217 (27%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 370 ANVSHELRTPIALLQGYTESIVDGVVTEPDEIHESLAIVLDESKRLNRLVNELLNVARMD 429

Query: 74  ----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                         D L  +    +     + ++ + +VS             ++L NL 
Sbjct: 430 AEGLSVEKESQPIADLLNKMRIKYRQQATDLELNMQFEVSNQQLWDYDMDRMDQVLTNLI 489

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--S 178
             A      G  +++   +    +I S+   G         + F +    +         
Sbjct: 490 DNASRYTQPGDTISVKTDEDDRSHILSIADTGTGIAPEHLQQVFDRFYKVDASRKRGKQG 549

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  E            L K
Sbjct: 550 TGLGLFICKMIIEEHGGTIEVESQVGKGTTFIIKLPK 586


>gi|268317258|ref|YP_003290977.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334792|gb|ACY48589.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 1346

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 56/238 (23%), Gaps = 24/238 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +     + +  L +   + + H+I +P+  +    ELL E+ +  E  + + +   S 
Sbjct: 802  LERANEELVRASRLKSEFLANMSHEIRTPMNGVLGMTELLLEMDLTKEQRECVEIIHRSG 861

Query: 61   IIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               L  +     ++                       +                      
Sbjct: 862  ETLLTILNDILDFSKIEAGRLELENIDFNLQETIEDVITLFAPRAAAKQLELICFIEERA 921

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFP 161
             E         ++L NL   A     RG  V       + + +     S++  G      
Sbjct: 922  LEVQGDPHRLRQVLSNLIGNAIKFTERGEVVVEAELERLDERRAHWRISVRDTGIGIPPD 981

Query: 162  EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         G+         +       L       +  E         +  + 
Sbjct: 982  RLSHLFQPFTQLDGSTTRRYGGTGLGLAISKQLVEMMGGTIGVESEVGKGSTFTVRIP 1039


>gi|89074890|ref|ZP_01161340.1| putative sensor histidine kinase [Photobacterium sp. SKA34]
 gi|89049287|gb|EAR54850.1| putative sensor histidine kinase [Photobacterium sp. SKA34]
          Length = 664

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLI 53
           + +     + S  L AL  L + I H+I +P+G I  ++EL+     +      E +  I
Sbjct: 415 LNQARSKLVISEKLAALGELTAGIAHEINNPLGVILGNVELIQFELGDNTVQVQEELDAI 474

Query: 54  RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +     ++V   V+++ 
Sbjct: 475 HAQIDRIRNITRSLLQYSRQGGVQNEVTWHHLNQIVEESLTLVRSGTKKLSVTFVVELNA 534

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLA 158
                    +  ++L+NL M    ++          +  I  Q   N  I  +  +G   
Sbjct: 535 KCSVEVNRHQLLQVLVNLQMNGIHAMEDKGRLIIRTEDWIDEQGQSNGAIVRVIDHGCGI 594

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E   +I D    +      +       L  +    +  E         S  L
Sbjct: 595 -AKENLERIFDPFFTTRRSGTWLGLSVSQSLIEDIGGEITVESEIGQGTTFSVYL 648


>gi|168701908|ref|ZP_02734185.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Gemmata obscuriglobus UQM 2246]
          Length = 418

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 70/235 (29%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDE---VGIEDEVMQLIR 54
           +         +  L  +  L + I H++ +P+G +   +E LL +          ++++ 
Sbjct: 170 LRATTQQLWQAAKLAGVGELAASIAHELNNPLGTVSLRIEGLLAKTPADDPRRRPLEVVE 229

Query: 55  LSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG 106
                    +  +            +VD    +     ++   +     +          
Sbjct: 230 GEVERMAGLVANLLQFSRAGRDQVSTVDVCEEVSRTVDLVAHHLRKHGVLVEPQFAPGVP 289

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFP 161
                 +   ++ LNLF  A  ++PRGG++   V      D +   +  +   G      
Sbjct: 290 HIHADRQHLRQVFLNLFTNAADAMPRGGRLVPRVRAGALPDGRPAVVIEIADTGVGI-PA 348

Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ +    +  +     +       +  ++   L  E        +   L 
Sbjct: 349 ELRDRVFEPFFTTKEEGKGTGLGLAICRRIVQQHHGTLEVESALGAGTTIRITLP 403


>gi|219849546|ref|YP_002463979.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543805|gb|ACL25543.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 666

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 64/251 (25%), Gaps = 41/251 (16%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
           MA+ +     +  L A+  L + + H+I +P+ A+ N++ LL    +  E   L      
Sbjct: 417 MARELA---QAEKLAAIGRLSASMAHEINNPLQALSNTIRLLRNPDLPSERRDLYLAKAA 473

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----G 106
                        L   R        VD    + D+       +       +        
Sbjct: 474 LELDGLIHRVQRILDLSRPNLEGRRPVDLNQVVNDVIANFRSTLTARNIHYIGDCTSSLP 533

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----------------------S 143
               +     ++   L   A  ++P GG + I                            
Sbjct: 534 WVTAVIGHLKQVCQTLVQNAIEAMPHGGTLHIRTYLRPPDGEPDRALFWRAGGGARQPLP 593

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
               +  +   G      E   +I +    +  +   +       +   +   L      
Sbjct: 594 DPAVVLEISDTGIGI-AHEDVPKIFEPFYSTRFNGLGLGLPLCYSIVDFHGGELWVRSQP 652

Query: 204 DHNVVLSALLE 214
           D       +L 
Sbjct: 653 DQGTTFRVILP 663


>gi|295704436|ref|YP_003597511.1| sporulation kinase KinA [Bacillus megaterium DSM 319]
 gi|294802095|gb|ADF39161.1| sporulation kinase KinA [Bacillus megaterium DSM 319]
          Length = 574

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 72/222 (32%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + +    + + LV  L + I H+I +P+ A+   ++LL E   +   +++I        
Sbjct: 351 TEKLLRESAQLSLVGQLAAGIAHEIRNPLTAVKGFMQLLKETSGQPYYVEMINHELDRIE 410

Query: 62  -------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSR 113
                     K     +      D L     + +V      +  + ++       I    
Sbjct: 411 LITDEFLSLAKPQAKTYKDKHIQDILENTLKLAEVQGITEKIHVKKEIDLHLPLVICEEN 470

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  ++  N+F  A  S+P GG VTI   + ++   +      G      E+   +     
Sbjct: 471 QLKQVFSNIFKNAVESMPSGGTVTIQLKRFNQENLVVRFSDEGPGI-TQERMQHLGKPFY 529

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +  E+K  +           +  LL 
Sbjct: 530 STKEKGTGLGLMVCYKIIREHKGEINFVSKLGKGTTVDILLP 571


>gi|304569720|ref|YP_011608.2| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311234506|gb|ADP87360.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 418

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 75/263 (28%), Gaps = 50/263 (19%)

Query: 1   MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDE-------------- 42
           + K        +  +    +L + + H++ +P+ AI+   E +L                
Sbjct: 153 LQKEFQAKFHQAEKMATVGMLAAGVAHEVNNPLTAINGFAEGILRRVKRLRGSVDPDLHA 212

Query: 43  --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                   ++   R         L F R        V+  + + D  +++ + +   K  
Sbjct: 213 DLTDYAGTILGECRRCQEIVHSLLTFSRPHSSAFSPVNLNVVVDDTLKLLHNHLKQPKYR 272

Query: 101 QVSWTGEKID-------LSRERAKILLNLFMVAHASLP--------------------RG 133
            V                  +  +++LNL + A  +L                     + 
Sbjct: 273 HVRIDTRLCPTAPVILGCEAQLKQVMLNLLVNALDALEAVAPSAGDSGDDAPPDAHGGKT 332

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191
             +T++    +    F+++  G+     E    + +    +        I       +  
Sbjct: 333 AVITVAPFRDERHAGFTVRDTGSGI-PQEHLHSLFEPFFTTKPVGRGIGIGLSTCYTIVT 391

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
           E+   +  E  +    V +  L 
Sbjct: 392 EHGGDISVESKEGEGSVFTVTLP 414


>gi|77919755|ref|YP_357570.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77545838|gb|ABA89400.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 481

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 65/229 (28%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           + K     + +  +  +  L + + H+I +P+ AI   L LL      G +  +++    
Sbjct: 247 LKKTRDELIHTARMATVGHLAAGLAHEIGNPLTAIIGYLSLLKAELRSGPQTGLVERASG 306

Query: 56  SSMSAIIRLKFMRLAFGYTGSV-----DSLIGLGDIEQVIEDFIAVDKRVQVSWTG---E 107
            +      ++ +        +         +    I+ +        + +Q         
Sbjct: 307 EANRIDRLVRDLLDFASPASTTAELFDPIRVFEEAIDILTHQGKISGEMIQNDLPPVLAP 366

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +     ++ +NL   +  +L   G + +S    +     ++  NG      E    I
Sbjct: 367 VHMVRHRLLQVFINLVSNSRDALVGPGTIRLSAGVLEGWVSLNVADNGIGI-EEESLQHI 425

Query: 168 VDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +        +       +  E    +            +  L 
Sbjct: 426 FDPFFTTKEPGKGRGLGLAVCYRVIREAGGYIEVVSDKGRGTEFTVRLP 474


>gi|237727861|ref|ZP_04558342.1| sensory kinase in two component regulatory system with HydG
           [Citrobacter sp. 30_2]
 gi|226910418|gb|EEH96336.1| sensory kinase in two component regulatory system with HydG
           [Citrobacter sp. 30_2]
          Length = 493

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 76/229 (33%), Gaps = 19/229 (8%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRL 55
           K +   +     L+AL  L + + H+I +P+ +I        E     G   E+ Q++  
Sbjct: 260 KELQDAMKRKEKLLALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAK 319

Query: 56  SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---- 107
            +          L+ ++ A      VD    +     ++    A  + +Q+ ++      
Sbjct: 320 EADRLNRVVSELLELVKPAHLTLQKVDLNEVITHSLHLV-SQDAASREIQLRFSANSTLP 378

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     ++LLNL++ A  ++ R       + + S       +  +G      E+  
Sbjct: 379 AIQADPDRLTQVLLNLYLNAIHAIGRQGTITVEANESSGERVKIVVTDSGKGI-AAEQLE 437

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I      +  D   +    V  +  ++   +    ++      +  L 
Sbjct: 438 AIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIQVASVEGKGATFTLWLP 486


>gi|83591310|ref|YP_431319.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83574224|gb|ABC20776.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 489

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 60/225 (26%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I   +E      L++  +    + +I   +      ++ 
Sbjct: 248 EQMRTEFVANVSHELRTPLTSIRGFVETLLEGALEDPEVSRRFLGIINHEAQRLQQLIED 307

Query: 67  M--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI---DLSRE 114
           +        +      G  D    L  +   V +        ++     E          
Sbjct: 308 LLSLSRLESQPKRQDAGRADLAATLDRVLTTVNQLAREKGVALEKEIPAEIPELAISESY 367

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171
             ++LLNL        P GG+VTI            +   G        P  F +    +
Sbjct: 368 LNQVLLNLIDNGIKYTPAGGRVTIRAARLGELVQVEVADTGIGIPPESLPRVFERFYRVD 427

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  +   +   +               L 
Sbjct: 428 KARSREMGGTGLGLAIVKHIVESHGGSISVTSRPGQGSHFFFTLP 472


>gi|148264166|ref|YP_001230872.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397666|gb|ABQ26299.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 682

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 69/237 (29%), Gaps = 27/237 (11%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-------------DE 48
                + +  + ++  L + + H+I +P+ ++    E L     +              +
Sbjct: 434 QELQLIQNDKMSSIGVLATGVAHEINNPLSSVAGYAEALLRRFRDEPALGEDKRLAAFPK 493

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +++I   S      +  +      +      VD    L +I +++    +      V+ 
Sbjct: 494 YLEVIIRESYHCKRIIDCLLNFGRKSDGSVGRVDINGILLEILELLRHQWSGGYIEVVTN 553

Query: 105 TGEKIDLSRERA----KILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLAR 159
             + I L         ++ +NL M AH +   GG     +           ++  G    
Sbjct: 554 LKKNIPLIHGDPTGLRQVCMNLLMNAHQASKEGGLVEITTDCTDDKMVCVKVRDTGCGI- 612

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +I D    +        +       +   +   +  E         +  L 
Sbjct: 613 AQDVIDRIWDPFFTTKEVGKGLGLGLAITYNIVKSHGGEISVESHIGEGSQFTLYLP 669


>gi|117621516|ref|YP_857574.1| sensory box sensor histidine kinase AtoS [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117562923|gb|ABK39871.1| sensory box sensor histidine kinase AtoS [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 697

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 71/235 (30%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     L S  L AL  LC+ + H+I +P+  I  ++EL+            E + L+
Sbjct: 429 LTQARQQLLISEKLAALGELCAGVAHEINNPLAVILGNVELMKLELGEAAEPVSEELALV 488

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 489 LAQIERIRAITRSLLQYSRPGDYETAPVWQHLTPIIEESLTLVRSALRQQQVNLVADLRA 548

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLA 158
                   ++  ++L+NL + A  +L   G++ +  +D  ++          +  NG+  
Sbjct: 549 QQPIEADRQQLLQVLINLLVNASHALGEQGEIRVESRDWLDDAGALQGAEVRVIDNGSGI 608

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +I D    +      +       +       LL +         +  L
Sbjct: 609 EAA-IIDKIFDPFFTTRATGTGLGLALSHRIISRWGGELLVDSSPGQGSCFTIRL 662


>gi|300854424|ref|YP_003779408.1| putative phosphate regulon sensor protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300434539|gb|ADK14306.1| predicted phosphate regulon sensor protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 574

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 61/222 (27%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLK--- 65
            ++ +   + + H++ +P+ +I    E L   D+V  +++ + +I   +      +    
Sbjct: 344 ENMRSQFVANVSHELKTPLTSIKGFAETLKYVDDVENKNKFLNIINDEADRLTRLINDIL 403

Query: 66  -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                              D +  +  + +       +               +    ++
Sbjct: 404 TLSHIESNSIDKVEEVKIDDIVKDVCCMMKTAAYKKNIKIEKIGDKVPSIWADADRFKQM 463

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
            +NL   +      GG V I      N  +  ++ NG      E  +++ +         
Sbjct: 464 AINLMDNSIKYTNNGGTVKIGTMLQDNNCVLWVEDNGVGI-SKEHQSRLFERFYRVDKAR 522

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +  +         +  + 
Sbjct: 523 SRNQGGTGLGLAIVKHIVLGLSGTIDLQSEVGKGSKFTVKIP 564


>gi|251778065|ref|ZP_04820985.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082380|gb|EES48270.1| sensor histidine kinase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 564

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 19/223 (8%), Positives = 62/223 (27%), Gaps = 17/223 (7%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL 64
           +  ++L      + + H++ +P+ +I    E L   ++    ++ + +I   S      +
Sbjct: 340 IKKLELMRTQFVANVSHELKTPLTSIKGFAETLRYVEDNETREKFLNIIDKESERLSRLI 399

Query: 65  K----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                       +            +  + ++ + + +   ++           +    +
Sbjct: 400 NDILVLSSIESNISTPNDEFLPKVIIEDVINMVRKLANNKDINLEFYDDNQELILGDKDK 459

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++ LNL   A      G KV +     +      +  NG      +    F +    +
Sbjct: 460 FYQLTLNLVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRVFERFYRVD 519

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +       +  +            ++
Sbjct: 520 KSRKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRIK 562


>gi|188589597|ref|YP_001920541.1| sensory histidine kinase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499878|gb|ACD53014.1| sensor histidine kinase [Clostridium botulinum E3 str. Alaska E43]
          Length = 555

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 19/223 (8%), Positives = 62/223 (27%), Gaps = 17/223 (7%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL 64
           +  ++L      + + H++ +P+ +I    E L   ++    ++ + +I   S      +
Sbjct: 331 IKKLELMRTQFVANVSHELKTPLTSIKGFAETLRYVEDNETREKFLNIIDKESERLSRLI 390

Query: 65  K----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                       +            +  + ++ + + +   ++           +    +
Sbjct: 391 NDILVLSSIESNISTPNDEFLPKVIIEDVINMVRKLANNKDINLEFYDDNQELILGDKDK 450

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++ LNL   A      G KV +     +      +  NG      +    F +    +
Sbjct: 451 FYQLTLNLVENAIKYSENGSKVKVVSYSKQGYYYLEISDNGIGIPKEDLPRVFERFYRVD 510

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +       +  +            ++
Sbjct: 511 KSRKKGGTGLGLAIVKHIVKTFNGDINVKSTLGEGSTFKVRIK 553


>gi|332203074|gb|EGJ17142.1| sensory box protein [Streptococcus pneumoniae GA47901]
          Length = 449

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A      GGK+T+ ++ ++++ I S+  +G      +   +I D        
Sbjct: 331 VVDNILNNAIKYSSDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|295702489|ref|YP_003595564.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294800148|gb|ADF37214.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 601

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 68/229 (29%), Gaps = 17/229 (7%)

Query: 2   AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            + +   +  S  L     + +   H+I +P+  IH  + L    L +   +   + L+ 
Sbjct: 372 TEELEKRMHQSEKLALVGEVAAGAAHEIRNPLAVIHGFISLMNQSLSDEEKKRFYLPLLM 431

Query: 55  LSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                    ++ M    +        V     + ++  +I       ++ ++ +  +   
Sbjct: 432 KELERINYIIEEMLLLSKPGTPVMKKVSMQDIINELLPLITHSSKFTEKDKLIFDVKLQP 491

Query: 111 LS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  ++  ++L NL   +  ++   G +TI  Q   +     ++ NG          
Sbjct: 492 HILKVDEKQIKQVLHNLIRNSIEAMDGEGVITIYSQVHDDNYCLYIEDNGKGIPLH-MQQ 550

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      S      +       +   +  ++          V    L 
Sbjct: 551 SLYQPFSTSKDSGTGLGLPIAQRILESHGGQIKLLSTSSRGTVFVIKLP 599


>gi|269926551|ref|YP_003323174.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790211|gb|ACZ42352.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 486

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 69/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A+     L+ ++          +   H++ +P+  I  + E++           E ++ 
Sbjct: 226 LARTFNSLLNRLEKAFESQKRFVADASHELRTPLTTIRGNAEVMLMDPNLPPDVREGLEN 285

Query: 53  IRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           IR         +  + +            Y       + L  ++Q+      +  R++  
Sbjct: 286 IRGEVSRLSRLVSNLLMLARADAGQVNLTYRPVNLHDVVLDTLKQMHTSIDGLSVRLERE 345

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                   + +  +++LNL   A    P+GG V +SV          ++  G      E 
Sbjct: 346 DQVMVSGDADQLKQVMLNLLDNAFKYTPKGGSVYVSVYAEPPWAKVEIRDTGIGIAPSEL 405

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +         +       +   +  R+            +  L 
Sbjct: 406 TRIFERFYRSSKAPKGAGSGLGLSIAQWVVRAHNGRITVSSKQGEGSTFTVWLP 459


>gi|209524733|ref|ZP_03273280.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima
           CS-328]
 gi|209494877|gb|EDZ95185.1| adenylate/guanylate cyclase with GAF sensor(s) [Arthrospira maxima
           CS-328]
          Length = 1206

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQL 52
            +     L +  L       + H+  +P+  +   LE          LD+  I     + 
Sbjct: 550 RQQAERLLEADRLKTEFFQNVSHEFRTPLTLMIGPLETVVNQQQDLSLDQAKIALRNSRR 609

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +       +   +F       +     L+                K++ +    +     
Sbjct: 610 LLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQSCPQL 669

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                   K+L NL   A    P  G +T+S+Q   N     +K  G   +  +      
Sbjct: 670 YLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNYCRLMVKDTGIGIKQEQLPHLFE 729

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +G+   + +   +    V  L   +  R+  E         +  L+
Sbjct: 730 RFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGTTFTVWLQ 780


>gi|167464856|ref|ZP_02329945.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 508

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 65/224 (29%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSM 58
            +     + S  L  V  L + + H+I +P+ ++   ++LL E     D  + ++     
Sbjct: 278 KRAEELLIKSEKLSVVGQLAAGVAHEIRNPLTSLKGFVQLLQEKIDGYDTYLDIMVSELE 337

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWT---GEKID 110
                +    +             L  + +     +    I  +  ++            
Sbjct: 338 RINFIVSEFLVFAKPQRVHFQPKDLHQMLKNTVALLNTKAIMSNVEIKDEIQELLPLVFC 397

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++ +N+   +  ++P GG + +       +   S    G          +I + 
Sbjct: 398 DENQIKQVFINVLNNSIEAMPEGGTIRLGGNCKDGQVTLSFSDEGVGISENRLT-RIGEP 456

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   +K ++      +   ++     
Sbjct: 457 FYTTKEKGTGLGLMASYKIMENHKGQIKITSEVNKGTIVHLRFP 500


>gi|148265586|ref|YP_001232292.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146399086|gb|ABQ27719.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 641

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 27/232 (11%)

Query: 9   LSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIE-------------DEVMQLI 53
           + +  +  + +L + I H+I +P+ +I    E L     +                +++I
Sbjct: 401 IQTEKMSGIGVLATGIAHEINNPLTSIAGYAEGLLRRFRDEPALKDDCRLDVFPHYLEVI 460

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEK 108
              S      +  +      +      + +  +            I     V    + + 
Sbjct: 461 VRESYRCKGIIDHLLSFSRKSDGSAVEVDMNVVLLEILELLRHQQIYRQIEVVTHLSKDL 520

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +  +     ++ +NL + AH S+   G     +           ++  G      +K 
Sbjct: 521 HSVLGDPSGLRQVCMNLLINAHQSIKGTGLVELTTENLDDTTVSVRIRDTGCGI-AQDKI 579

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   +   +  E         + LL 
Sbjct: 580 DRIWDPFFTTKEVGKGIGLGLALTYNIIKRHGGEIQVESRPGEGTQFTVLLP 631


>gi|2575807|dbj|BAA22997.1| adenylate cyclase [Arthrospira platensis]
 gi|291568632|dbj|BAI90904.1| adenylate cyclase [Arthrospira platensis NIES-39]
          Length = 1202

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQL 52
            +     L +  L       + H+  +P+  +   LE          LD+  I     + 
Sbjct: 550 RQQAERLLEADRLKTEFFQNVSHEFRTPLTLMIGPLETVVNQQQDLSLDQAKIALRNSRR 609

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +       +   +F       +     L+                K++ +    +     
Sbjct: 610 LLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQSCPQL 669

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                   K+L NL   A    P  G +T+S+Q   N     +K  G   +  +      
Sbjct: 670 YLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNYCRLMVKDTGIGIKQEQLPHLFE 729

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +G+   + +   +    V  L   +  R+  E         +  L+
Sbjct: 730 RFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGTTFTVWLQ 780


>gi|284052262|ref|ZP_06382472.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
          Length = 1066

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQL 52
            +     L +  L       + H+  +P+  +   LE          LD+  I     + 
Sbjct: 550 RQQAERLLEADRLKTEFFQNVSHEFRTPLTLMIGPLETVVNQQQDLSLDQAKIALRNSRR 609

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +       +   +F       +     L+                K++ +    +     
Sbjct: 610 LLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCQQTVESFKSYCDRKQINLVTNLQSCPQL 669

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                   K+L NL   A    P  G +T+S+Q   N     +K  G   +  +      
Sbjct: 670 YLDLERFDKVLYNLLSNAMKFTPTDGTITVSLQPEGNYCRLMVKDTGIGIKQEQLPHLFE 729

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +G+   + +   +    V  L   +  R+  E         +  L+
Sbjct: 730 RFRQAEGSANRSFEGSGLGLALVKELVELHHGRITVESEYGQGTTFTVWLQ 780


>gi|228905409|ref|ZP_04069364.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
 gi|228854229|gb|EEM98932.1| hypothetical protein bthur0014_64740 [Bacillus thuringiensis IBL
           4222]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|228911304|ref|ZP_04075108.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
 gi|228848322|gb|EEM93172.1| hypothetical protein bthur0013_54420 [Bacillus thuringiensis IBL
           200]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|228924209|ref|ZP_04087480.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228835427|gb|EEM80797.1| hypothetical protein bthur0011_51800 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|229164415|ref|ZP_04292344.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
 gi|228619065|gb|EEK75962.1| hypothetical protein bcere0009_51730 [Bacillus cereus R309803]
          Length = 588

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 361 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 420

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   VS+       +      + +  ++L N
Sbjct: 421 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 481 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 540 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 578


>gi|75761473|ref|ZP_00741438.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218900606|ref|YP_002449017.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228968615|ref|ZP_04129600.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74491034|gb|EAO54285.1| Two-component sensor kinase yycG [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|218544459|gb|ACK96853.1| sensory box histidine kinase YycG [Bacillus cereus G9842]
 gi|228791107|gb|EEM38724.1| hypothetical protein bthur0004_53870 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|189467150|ref|ZP_03015935.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
 gi|189435414|gb|EDV04399.1| hypothetical protein BACINT_03534 [Bacteroides intestinalis DSM
           17393]
          Length = 806

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 19/227 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ +I     LL E    +E  + I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNSIVGFSSLLAETDDREERQEYIKIVETNNE 637

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107
           +                         +D       I + +E  +     +          
Sbjct: 638 LLLQLVSDILDLSKIESGTFDFVRSDLDVNESCMKIIKSLEMKVPETVDLVFEKYMPDCH 697

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ N    A     +G       Q + +E  F ++  G      EK   I
Sbjct: 698 IYTDKNRFMQVITNFINNALKFTKQGTIALGYEQTAPHEIKFYVRDTGVGI-PKEKIDSI 756

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +  V   + +    +       L  +   ++  E  +         
Sbjct: 757 FERFVKLNTFVQGTGLGLSICKSLVSQMGGKIGVESTEGEGSCFWFT 803


>gi|228932077|ref|ZP_04094969.1| hypothetical protein bthur0009_5620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827660|gb|EEM73402.1| hypothetical protein bthur0009_5620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 462

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 237 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 296

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 297 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 356

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 357 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 416

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 417 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 455


>gi|229099892|ref|ZP_04230815.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
 gi|229118955|ref|ZP_04248300.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228664480|gb|EEL19976.1| hypothetical protein bcere0017_52180 [Bacillus cereus Rock1-3]
 gi|228683507|gb|EEL37462.1| hypothetical protein bcere0020_51100 [Bacillus cereus Rock3-29]
          Length = 613

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D       S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|268316551|ref|YP_003290270.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334085|gb|ACY47882.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 486

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 73/238 (30%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLE----LLDEV--GIEDEVM 50
           MA+ +  ++ S++    +   L + I HD+ +P+ A+    E    LL +       E +
Sbjct: 243 MAQAVARSIRSLEETDRMRRELMAGIGHDLRTPLAALLGYAEEARRLLQQGNTEAAVEAL 302

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            ++          ++ +            L         + D      R      G  + 
Sbjct: 303 AVVEERGRHLQRLVEALFELSLLERPEPPLQLEPVPLGELLDETFRAHRRLFQDAGLTLQ 362

Query: 111 LSR------------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                             ++L NL   A    P GG V +  + ++ E    ++  G   
Sbjct: 363 ADWPLALPVVEADGARLRRVLDNLLDNARRHTPAGGTVWLGARATETEVHIWVQDTGPGL 422

Query: 159 RFPEKFTQIVDGNVESTIDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             PE+  ++ +        +   +       +A  +  RL            + +L +
Sbjct: 423 -SPEQQARLFEPYGRQKSGASRGLGLLISQAIARAHGGRLEVTSAPGQGSTFTLILPR 479


>gi|320536673|ref|ZP_08036688.1| PAS domain S-box [Treponema phagedenis F0421]
 gi|320146495|gb|EFW38096.1| PAS domain S-box [Treponema phagedenis F0421]
          Length = 413

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
            K    N   ++ L +L  L + + H+I +P+ AI   ++LL +              + 
Sbjct: 146 KKRTEINHRRLESLASLTNLAAAVAHEIKNPLAAISIHVQLLRKNFKACDLHINEKAQKH 205

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSW 104
           + ++          +     A        + + +  I   +                +  
Sbjct: 206 LNVVEEEIDRLNKIVVNFLFAVRPLQVELAPVNINKIINDLHQTFLDEFKKSGVYFSLRL 265

Query: 105 TGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                 +  +     +  +N    A A++  GG + I      +     +   G      
Sbjct: 266 DKTIPIIQGDERLLRQAFMNFLTNAKAAMKTGGALIIYTTCKDDFIEIYISDTGQGI-SE 324

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    +  D   +       +  E+   +  + +       +  L 
Sbjct: 325 ENLHKIFEPYFSTKSDGTGLGLTMAYKVIKEHNGDIHVDSVVGEGTCFTIYLP 377


>gi|308179222|ref|YP_003923350.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|308044713|gb|ADN97256.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 624

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 66/225 (29%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-A 70
              S + H++ +P+ ++ + +E L      +  +    +++ +  +   I  +  +   +
Sbjct: 384 QFVSNVSHELRTPLTSLRSYIEALSDGAWKDPEVAPGFLKVTQEETDRMIRMINELLSLS 443

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRE 114
              +G+    + L +I ++    +     +                           + +
Sbjct: 444 RMDSGTTRVDMELVNINEMFNYVLDRFDMILKKDDNPAKYYTIKREFTKRDLWVEIDTDK 503

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L N+   A    P GG VT  + ++ N  I S+   G      +            
Sbjct: 504 FTQVLDNIMNNAIKYSPDGGVVTCRLLETHNRVIISISDQGLGIPRADLGHVFDRFFRVD 563

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +      R+  + ++         L 
Sbjct: 564 KARSRAQGGTGLGLAISKEVVQMLGGRIWVDSVEGKGSTFYISLP 608


>gi|42780523|ref|NP_977770.1| sensor histidine kinase KinD [Bacillus cereus ATCC 10987]
 gi|42736443|gb|AAS40378.1| sensor histidine kinase KinD [Bacillus cereus ATCC 10987]
          Length = 498

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 59/223 (26%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +     L  ++LV    +   H+I +P+  I   + LL E      +     +I      
Sbjct: 273 ERQQNELQKIELVGTFAASTAHEIRNPLTGIKGLVALLKEKYKDEQDQFYFSIIEQEIER 332

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDL 111
               +    +    T  ++    +  I   +             V               
Sbjct: 333 INEIVSEFLILGKPTAIIEQTYDVRTILNEVALIIQSEANLHNIVFHLHLPDRPVHIRCS 392

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +++LN+   A  ++  G  +TI V +++      +   G           +    
Sbjct: 393 KDHMKQVVLNIIKNAIEAMTSGDTLTIFVTNNETHAQLQIIDTGKGI-PKHIQKHLFHPF 451

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +    I++    +   + 
Sbjct: 452 FTNKDTGTGLGLVICKRIIEMYNGHIFINSIENEGTTVHIEIP 494


>gi|229159472|ref|ZP_04287489.1| hypothetical protein bcere0009_2780 [Bacillus cereus R309803]
 gi|228623980|gb|EEK80789.1| hypothetical protein bcere0009_2780 [Bacillus cereus R309803]
          Length = 672

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS+++L+  + + I H+I +P+ A+   L+LL E    ++  Q  +L       
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTAVRGFLQLLKEENTYEKHNQYFKLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + +V         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNAIIHDIIPLIKVDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++     +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSERKVLTISTYKEGQNCVVLAVRDQGKGI-KPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|254464572|ref|ZP_05077983.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodobacterales
           bacterium Y4I]
 gi|206685480|gb|EDZ45962.1| alkaline phosphatase synthesis sensor protein PhoR [Rhodobacterales
           bacterium Y4I]
          Length = 346

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 65/238 (27%), Gaps = 27/238 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++     +  +     + + H++ +P+ A+   +E L     ++    D  + ++   + 
Sbjct: 108 DVTEREQAGQMRRDFVANVSHELRTPLTALIGFIETLRGPAREDAPARDRFLAIMEGEAS 167

Query: 59  SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +                           ++ +     A   +V +    E +
Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPKQTVDLTGHLASTLKTLQPVAEARGVQVSLEAPDEAV 227

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENI-----FSLKINGNLARFP 161
            ++ +  ++          A        +V +S  D             +  NG      
Sbjct: 228 SVTGDPDQLQQVFTNLVENAVKYGGDQVRVVLSRTDRDPSVRAAAARVQVIDNGPGIDPV 287

Query: 162 EKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +      +    +    V  + + ++ RL  +       V + +L 
Sbjct: 288 HLPRLTERFYRADSHRSREMGGTGLGLAIVKHIVNRHRGRLRVDSELGQGSVFTVVLP 345


>gi|189425218|ref|YP_001952395.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189421477|gb|ACD95875.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 498

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 64/232 (27%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + +     + S  + +  LL +   H+I +P+ ++    E+L +         + +  I 
Sbjct: 260 LQQAREEAIRSEKMASVGLLAAGTAHEIGTPLASVMGYAEILAQELEHNPAHADYLARIM 319

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
            S       +K +        +V   + L  + Q     +         ++ ++      
Sbjct: 320 DSCGRIDRIVKGLLEYARPKQTVHEPVDLSLLMQATVELLQHQGFFKGIKLTMTTEPASS 379

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKF 164
             S +  ++   L  +   +     +             K   +  +   G     PE  
Sbjct: 380 LASLDPHQLQQVLINLLINASDAMPQGGEIKLALKQGADKKILLLEVWDTGTGI-APEHL 438

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +        +       +      R+  +         +  + 
Sbjct: 439 GKLFDPFFTTKSPGKGTGLGLAISARIIESFGGRITVQSRVGLGSRFTIHVP 490


>gi|226310932|ref|YP_002770826.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226093880|dbj|BAH42322.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 470

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 71/222 (31%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60
           A+    N   + LV  L + I H+I +P+ ++   ++L+  +   + E   ++       
Sbjct: 247 AQEFLQNSEKLALVGQLAAGIAHEIRNPLTSLKGFVQLMQKDGMRKPEYFSIMSSELARI 306

Query: 61  IIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            + +  + +      +V     L       +  +  + I     +QV +  E   +  + 
Sbjct: 307 EMIVSELLVLAKPHTAVFEARDLSNLITHVVTLLETEAILKKVMIQVVFESEVPLIHCDE 366

Query: 116 AKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            ++             +    G++ I ++   +  +   + NG      +   ++ +   
Sbjct: 367 NQLKQAFINFLKNGIEATAGNGEIVIRLRCEDDRVVIRFEDNGVGIPAHQ-MARLGEAFF 425

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +   ++  L       +   +   L 
Sbjct: 426 TTKETGTGLGLMVSRKIIENHRGTLRLISTPGNGTAVEVCLP 467


>gi|144897852|emb|CAM74716.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 844

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 64/237 (27%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            +     L + +   + +   + + H++ +P+  I    EL+ +   ++E+ +   +   
Sbjct: 605 QRAEEARLRAEEASRMKSEFLASMSHELRTPLNGIIGFAELIKDDAADEEMRENAEIIEK 664

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQV 102
           S                           +VD    + ++  + +            ++  
Sbjct: 665 SGSHLLNLVNTILDVAKIEAGAMTLARETVDIRTLVTEVAAIHQSGADAKGLDFQVQLAD 724

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                 +       ++L NL   A       G+V   V   K+  +  +  +G       
Sbjct: 725 DLPPALVTDPVRVRQVLHNLLSNAVKFTQA-GRVHTVVAADKDSVVIRVIDSGPGIALDL 783

Query: 160 FPEKFTQIVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + F +   G   +  +     +       L       +  E            L 
Sbjct: 784 QDKIFEKFHQGDAFLTRSHGGTGLGLTLARHLVELMGGEMSLESQVGQGSTFVFTLP 840


>gi|24251268|gb|AAN46188.1| unknown protein [Synechococcus elongatus PCC 7942]
          Length = 977

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 67/239 (28%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +      L  + + H++ +P+ AI    E++ E   +   ++ +        
Sbjct: 467 AREQAEAANQAKSAFL--ANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKIN 524

Query: 62  IRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              K +                    Y  S      +  ++ +I+  I  ++   +    
Sbjct: 525 NAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCP 584

Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                      +  + LLNL   A       G  + +     ++ +F +  +G     PE
Sbjct: 585 ADIGLMTADVTKLRQTLLNLLSNASKFT-HQGTDSAAGCCQGDQVVFKVVDSGIGM-SPE 642

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +I +                 +              ++  E +       +  L +
Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 701


>gi|307543807|ref|YP_003896286.1| histidine kinase [Halomonas elongata DSM 2581]
 gi|307215831|emb|CBV41101.1| histidine kinase [Halomonas elongata DSM 2581]
          Length = 639

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 65/235 (27%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           + +     + +  L  L  L + I H++  P+ AI    E              D  ++ 
Sbjct: 389 LRETRDELVQAAKLAVLGQLAAGINHELNQPLSAIRAYAENARAFIERGRAETADANLEQ 448

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSW 104
           I   +         +R     +G   + + +                      +R   + 
Sbjct: 449 IIELTERMSEISAQLRQFSRKSGDTLTAVSVPSCFDYALRLFQARLNELGVTVERHWQAE 508

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPE 162
                       ++L+NL   A  ++       +  ++  +  +    +  +G     P+
Sbjct: 509 DIWVRADPVRLEQVLVNLIGNALQAMADTATPHLVLTIDSTPEQVQIRVADSGPGIAEPQ 568

Query: 163 KFTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++ +    +      +         +  +   R+  +       + +  L +
Sbjct: 569 LS-RVFEPFFTTKSAGSGLGLGLSISGRIIDDLGGRIEADNAPGGGAMFTITLPR 622


>gi|315221423|ref|ZP_07863344.1| PAS domain S-box [Streptococcus anginosus F0211]
 gi|315189542|gb|EFU23236.1| PAS domain S-box [Streptococcus anginosus F0211]
          Length = 450

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVSDLLSLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSHLDIELTNFTAFITFILNRFDKIRSQNDDKKYEIIRDYPINSIWVEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GGK+T+S++ +  + I S+   G      +    F +    +   
Sbjct: 331 VIDNIINNAIKYSPDGGKITVSMKTTDTQMILSISDEGLGIPKKDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +         + +L 
Sbjct: 391 SRAQGGSGLGLAIAKEIIKQHHGFIWAKSEYGKGSTFTIVLP 432


>gi|89092823|ref|ZP_01165775.1| sensor histidine kinase [Oceanospirillum sp. MED92]
 gi|89082848|gb|EAR62068.1| sensor histidine kinase [Oceanospirillum sp. MED92]
          Length = 709

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           +       L    L  L  L + I H+I +P   I  +++LL     D+V    E + +I
Sbjct: 444 LKSTRKQLLDKEKLAVLGELTAGIAHEINNPAAVILGNVDLLVAELADDVNPVQEEVDMI 503

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSW 104
                     +  +         V+S   +   + + +  + V   ++            
Sbjct: 504 IQQVYRIRSLINNLLQYSRPGHYVESYELMATDKVIDDTLLLVSHALEKQQVTVEKAYQA 563

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLAR 159
           +       ++  ++L+NL + A  +L               ++    ++  ++ +G    
Sbjct: 564 SCPVEINCQQVQQVLVNLILNASHALEGPGSIKLKTSNWLEEEQIIGSVIEVEDHGKGI- 622

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            P+  ++I D    +      +       +   +   +      +   V S  L
Sbjct: 623 DPDNLSKIFDPFFTTKKSGTGLGLSVSYGIIRRHGGDIRVHSSPESGTVFSVYL 676


>gi|322384029|ref|ZP_08057756.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321151376|gb|EFX44566.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 517

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 65/224 (29%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSM 58
            +     + S  L  V  L + + H+I +P+ ++   ++LL E     D  + ++     
Sbjct: 287 KRAEELLIKSEKLSVVGQLAAGVAHEIRNPLTSLKGFVQLLQEKIDGYDTYLDIMVSELE 346

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWT---GEKID 110
                +    +             L  + +     +    I  +  ++            
Sbjct: 347 RINFIVSEFLVFAKPQRVHFQPKDLHQMLKNTVALLNTKAIMSNVEIKDEIQELLPLVFC 406

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++ +N+   +  ++P GG + +       +   S    G          +I + 
Sbjct: 407 DENQIKQVFINVLNNSIEAMPEGGTIRLGGNCKDGQVTLSFSDEGVGISENRLT-RIGEP 465

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   +K ++      +   ++     
Sbjct: 466 FYTTKEKGTGLGLMASYKIMENHKGQIKITSEVNKGTIVHLRFP 509


>gi|45358683|ref|NP_988240.1| ATPase-like ATP-binding protein [Methanococcus maripaludis S2]
 gi|45047549|emb|CAF30676.1| ATP-binding protein, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal:Bacterial sensor
           protein C-term [Methanococcus maripaludis S2]
          Length = 614

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66
           +L + + S + H++ +P+ AI   +ELL +         + E + +I  +S         
Sbjct: 389 NLKSEILSIVSHELRTPLTAILGYVELLKDETAGKLSEKQKEFISVISENSDRLKRITDN 448

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERA 116
           M        ++       ++    + DI +  + F      V +      +      +  
Sbjct: 449 MSDLVTVDNKILDIKRDRINLKKEVNDILRSFDYFAESKNIVLLEDVDNLDIKGDKSKIH 508

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           ++L NL   A     +  KVT+   + K      +   G           F +    +  
Sbjct: 509 QVLSNLIENAIKFSKKQTKVTVMGFEDKGNIHLEITDQGPGIPKEHLGKIFDKFYQIDSS 568

Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +       +   +   +  E        +  +  
Sbjct: 569 SKREVGGSGLGLAVCKKIVESHGGSIWVESKIGKGTTVHVMFP 611


>gi|320334937|ref|YP_004171648.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
 gi|319756226|gb|ADV67983.1| multi-sensor signal transduction histidine kinase [Deinococcus
            maricopensis DSM 21211]
          Length = 1510

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 54/215 (25%), Gaps = 2/215 (0%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +       ++ L     +   H++ +P+ A+   L  L+      + +      + + 
Sbjct: 1289 LEEQAGQLEEALKLQKTFLAETSHELRTPLTALLGYLRRLEREAGATQTLHDAARVAENM 1348

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
               +  +                 ++  ++            S   E +       ++ +
Sbjct: 1349 TRLVNDLLQLSRGELVQSIEPHFVNLADIVRAVGRDYGIRVDSPDIEVVADPGRLTQVFV 1408

Query: 121  NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH- 179
            NL   A        KV +  +D   +    +   G      +   +I D           
Sbjct: 1409 NLVSNAIRICGTPDKVRVYAEDHGQDITIDVIDTGPGV-PDDVKPRIFDKFYRGKEAGSA 1467

Query: 180  DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +  R+               L 
Sbjct: 1468 GLGLTIAQQVVQAHGGRIEVLDTPGGGATFRVTLP 1502



 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 57/226 (25%), Gaps = 18/226 (7%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSS 57
            +      ++ +L A     + HD+ +P+  I    +LL +            + +I  ++
Sbjct: 877  RTAALQDANRELEAF-SYSVSHDLRTPLRHIVGFADLLRKDTGTLSDKSARYLGIITDAA 935

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLG-------DIEQVIEDFIAVDKRVQVSWTGEKID 110
                  +  +               +            +  D    D + ++        
Sbjct: 936  TKMSTLIDDLLEFSRMGRQELRRAPVNLTELAEEARADLQPDAEGRDVQWRLHDLPTVPA 995

Query: 111  LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARF---PEKFT 165
                  ++ +NL   A     +     I V+  +  +     +  NG           F 
Sbjct: 996  DRALMKQVFVNLLGNALKYSGKQAHARIEVRAEQGTDSVTVHVSDNGVGFDPAYADRLFG 1055

Query: 166  QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                 +     +   I    V  + + +   +            S 
Sbjct: 1056 VFQRLHRADEFNGTGIGLANVRRIINRHGGTVNAHSTPGEGATFSF 1101


>gi|304405287|ref|ZP_07386947.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304346166|gb|EFM12000.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 573

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 68/215 (31%), Gaps = 12/215 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLK 65
            +  + LV  + + I H+I +P+  I   ++LL E       +  ++I      A   + 
Sbjct: 338 RMDRLSLVGQMAASITHEIRNPMAVIRGFVQLLKERSGQDMQDYFRIIMDELDRANAIIN 397

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------IDLSRERAK 117
                        +L+ L ++   +   I  D  ++      +            +E  +
Sbjct: 398 DFLSLAQNRLIDKNLLSLNNLLMEMLPLITADANLRGLAVECRLEPNLPELFLNDKEIKQ 457

Query: 118 ILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LNL      ++  G      S   S       ++  G      EK  ++ +    +  
Sbjct: 458 LILNLARNGLEAMADGDGALQLSTYTSAEMVQLRVQDAGVGI-SQEKMERLFEPFFTTKT 516

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +     + +A  +  R+  E  +        
Sbjct: 517 KGTGLGLPVCLSIAERHHGRIDVESEEGKGTTFIV 551


>gi|299821103|ref|ZP_07052991.1| sensor histidine kinase [Listeria grayi DSM 20601]
 gi|299816768|gb|EFI84004.1| sensor histidine kinase [Listeria grayi DSM 20601]
          Length = 610

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 61/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++++ LE L +   E      + +++ +  +   I  +  +     
Sbjct: 382 FVSNVSHELRTPLTSMNSYLEALRDGAWEDKEIAPQFLEVTQNETERMIRLVNDLLKLSR 441

Query: 73  YTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLN 121
                +                +    +     +                  +  +++ N
Sbjct: 442 MDAGRESLEKSFVNFTDFFNHIIDRFEMMKKDTIMFIRHIPKLPIIIEIDEDKIMQVMDN 501

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++   ++   S+   G      +                  +
Sbjct: 502 IISNANKYSPDGGRISFYLKKWSDKIQISVSDEGLGIPDEDLDKVFDRFFRVDKARSREM 561

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E  +     +   L 
Sbjct: 562 GGTGLGLAIAKEVIESHGGHIWAERNNGRGTTIHFTLP 599


>gi|39996203|ref|NP_952154.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982968|gb|AAR34427.1| sensory box histidine kinase [Geobacter sulfurreducens PCA]
          Length = 537

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 63/222 (28%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             + + H++ +P+  I    E L      ++       +++I   S      ++ +    
Sbjct: 316 FVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSERLADLIRDLLTLS 375

Query: 72  G--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRERAKIL 119
                        +     +     ++E   A  + V     ++     +       ++L
Sbjct: 376 QLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIVIDISALAGAPPVLADPGRLEQVL 435

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A    P GG +T+S  ++      S+   G      +   +I +          
Sbjct: 436 INLMDNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLP-RIFERFYRVDAARS 494

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    V  +   +   +  E            L K
Sbjct: 495 RDEGGTGLGLSIVKHIIQLHGGSITVESEHGKGTTFRFTLRK 536


>gi|227814547|ref|YP_002814556.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|227004812|gb|ACP14555.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
          Length = 509

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 73/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  + A+  L + + H++ +P+  I   ++L       +++   L+     
Sbjct: 262 KKTEELLNKSDTIAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINKEDQEKYFDLMLSEIE 321

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                  +F+ +A     S +        + V+           +               
Sbjct: 322 RIEAILQEFLSIAKTDEISTEKKNIYQIFKNVVSLINTKAIMTNIQVELYTDSKDIIIEC 381

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I +++   +  I S+   G      E+  ++ +
Sbjct: 382 SENQLKQVFINILQNSIEAMPDGGRISIHIKEIGKDGIIISVIDKGIGI-PAERIKRLGE 440

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      I       +   ++  +           ++  L K
Sbjct: 441 PFYSTKEKGTGIGLMLSYKIIESHQGNISIMSEVGVGTTVTIYLPK 486


>gi|229051134|ref|ZP_04194678.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
 gi|228722197|gb|EEL73598.1| hypothetical protein bcere0027_50850 [Bacillus cereus AH676]
          Length = 613

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 386 FVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 445

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    I D   + K   VS+       +      + +  ++L N
Sbjct: 446 LDSTEYRLMKEWVDFTDFFNNIIDRFEMSKEQNVSFKRSFSKKSRFIDMDTDKITQVLYN 505

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D  +    S+   G      E   +I +            
Sbjct: 506 IISNALKYSPEGGTVTYRLRDRGDLLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 564

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 565 MGGTGLGLAIAKEMIEAHGGSIWAKSEEGKGTTIYFTLP 603


>gi|307297683|ref|ZP_07577489.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916943|gb|EFN47325.1| PAS/PAC sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 416

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 63/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           + ++I        +     + + H++ +P+ +IH   E L     ++       + +I  
Sbjct: 172 LLRDITKEKEVEAMRRDFVANVSHELRTPLTSIHGYAETLAEDDLEDKETVYRFLSIIEN 231

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S      +  +             +       + +  +  I + +     V   V V  
Sbjct: 232 ESARMTRLINDLLDLEKLESGEASFSKEDVELGEVVNYVMRIVEPLASEKNVSINVDVDE 291

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160
                       ++LLNL   A             + +      N  +  ++  G     
Sbjct: 292 GIFVEGDFDRLVQLLLNLVDNAVKYTFAKEHGPKEIWLRAYAQNNSAMIEVEDTGVGIPE 351

Query: 161 P---EKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 F +    +      +    +       +  ++   +  E       +L   L 
Sbjct: 352 DSLKHIFERFYRVDKARSRKMGGTGLGLAITRFIVEKHGGTISLESEYGTGTILKVKLP 410


>gi|283852154|ref|ZP_06369427.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572380|gb|EFC20367.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 306

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 25/232 (10%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------------EVGIEDEVMQL 52
             L S  L A+  L S I H+I +P+  I   L+L+             ++    + +  
Sbjct: 75  QLLQSQKLAAIGELSSGIAHEINNPLAIITQELDLVREIAGEGPDVTAADLAEARDSLAE 134

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107
           I        +    +         V     L  + + +      +       +   +   
Sbjct: 135 IGRQVDRCRLVTHKLLNFARKMEPVLQEEALDQVIEDMALLAEREAAGRGLAIVRDYAPG 194

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +     +++LNL   A A+ P+GG +T+S +  +      ++  G     PE  
Sbjct: 195 LPPIRTDVPLLRQVILNLLTNALAATPKGGTITVSTRRDEKTICIEVRDTGCGI-PPENM 253

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +        +       +       L  E         +  L 
Sbjct: 254 QKIFNPFFTTKEPGKGTGLGLSLAHGIVTRLGGTLAAESRPGQGAAFTVTLP 305


>gi|229014631|ref|ZP_04171745.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
 gi|228746642|gb|EEL96531.1| hypothetical protein bmyco0001_50310 [Bacillus mycoides DSM 2048]
          Length = 611

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54
                +          + + H++ +P+  + + LE L +   +D  +         +   
Sbjct: 372 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 429

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107
                    L+  +L       +   +   D    + D   + K   VS+       +  
Sbjct: 430 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 489

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               + +  ++L N+   A    P GG VT  ++D       S+   G      E   +I
Sbjct: 490 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 548

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +    +       +   +   +  +  +     +   L 
Sbjct: 549 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 601


>gi|229065124|ref|ZP_04200417.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
 gi|228716153|gb|EEL67872.1| hypothetical protein bcere0026_51770 [Bacillus cereus AH603]
          Length = 586

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54
                +          + + H++ +P+  + + LE L +   +D  +         +   
Sbjct: 347 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 404

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107
                    L+  +L       +   +   D    + D   + K   VS+       +  
Sbjct: 405 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 464

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               + +  ++L N+   A    P GG VT  ++D       S+   G      E   +I
Sbjct: 465 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 523

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +    +       +   +   +  +  +     +   L 
Sbjct: 524 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|229136290|ref|ZP_04265037.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
 gi|228647162|gb|EEL03250.1| hypothetical protein bcere0014_51590 [Bacillus cereus BDRD-ST196]
          Length = 586

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54
                +          + + H++ +P+  + + LE L +   +D  +         +   
Sbjct: 347 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 404

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107
                    L+  +L       +   +   D    + D   + K   VS+       +  
Sbjct: 405 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 464

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               + +  ++L N+   A    P GG VT  ++D       S+   G      E   +I
Sbjct: 465 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 523

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +    +       +   +   +  +  +     +   L 
Sbjct: 524 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|229170167|ref|ZP_04297854.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
 gi|228613312|gb|EEK70450.1| hypothetical protein bcere0007_51010 [Bacillus cereus AH621]
          Length = 586

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54
                +          + + H++ +P+  + + LE L +   +D  +         +   
Sbjct: 347 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 404

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107
                    L+  +L       +   +   D    + D   + K   VS+       +  
Sbjct: 405 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 464

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               + +  ++L N+   A    P GG VT  ++D       S+   G      E   +I
Sbjct: 465 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 523

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +    +       +   +   +  +  +     +   L 
Sbjct: 524 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 576


>gi|163943145|ref|YP_001648029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865342|gb|ABY46401.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 611

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 66/233 (28%), Gaps = 25/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54
                +          + + H++ +P+  + + LE L +   +D  +         +   
Sbjct: 372 TEQERIEQER--REFVANVSHELRTPLTTMRSYLEALTDGAWQDPNIAPQFLTVTQEETE 429

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107
                    L+  +L       +   +   D    + D   + K   VS+       +  
Sbjct: 430 RMIRLVNALLQLSKLDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVSFKRSFSKKSRF 489

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               + +  ++L N+   A    P GG VT  ++D       S+   G      E   +I
Sbjct: 490 IDMDTDKITQVLYNIISNALKYSPEGGTVTYRLRDRGELLEISVSDQGMGI-PKENVDKI 548

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +    +       +   +   +  +  +     +   L 
Sbjct: 549 FERFYRVDKARSRQMGGTGLGLAIAKEMIEAHGGSVWAKSEEGKGTTIYFTLP 601


>gi|148262988|ref|YP_001229694.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter uraniireducens Rf4]
 gi|146396488|gb|ABQ25121.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter uraniireducens Rf4]
          Length = 362

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 64/231 (27%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----MSAIIR 63
            +  L  L  L + + H+I +P+G I  + +LL+    ++  ++                
Sbjct: 130 QADRLSTLGALAAGLAHEIKNPLGGIKGAAQLLEMELPDNAELRDCTRVMLKEVQRVNRI 189

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116
           ++ +           + + L  I   I          +     +  D S           
Sbjct: 190 VEELLELASPRKLDLTKVNLHKILGDIILLQKRTVDDRRVTFQQHFDPSIPPILADEALL 249

Query: 117 -KILLNLFMVAHASLPRGG------------KVTISVQDSKNENIFSLKINGNLARFPEK 163
            ++ LNL   A  ++   G             +T   +         +  +G      E+
Sbjct: 250 TQLFLNLIKNAVEAVGAVGLIKVSSRVLADYSMTQKGEGRSRMVAIEVSDDGPGI-LKEQ 308

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +      +       +  E++  +  +         + +L 
Sbjct: 309 LEHLFTPFYTTKAKGTGLGLAICHKIVAEHRGMIRVDSEPTKGTTFTVMLP 359


>gi|85710770|ref|ZP_01041831.1| Signal transduction histidine kinase (contains HAMP domain)
           [Idiomarina baltica OS145]
 gi|85695174|gb|EAQ33111.1| Signal transduction histidine kinase (contains HAMP domain)
           [Idiomarina baltica OS145]
          Length = 437

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 54/204 (26%), Gaps = 6/204 (2%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           LL + + HD+ +P+  I  + E++   ++      V  +  ++ +               
Sbjct: 227 LLMAGVSHDLRTPLTRIRLAAEMMPESEDYLARGIVEDVDDMNDIIDQFIDYVRLDQQEK 286

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
                    L      + D         +              ++++NL   A       
Sbjct: 287 ASRESLNELLEQTLANLPDSWEKTFSADLGDCPLVWVRPLSIKRVVVNLLENAERYGRSR 346

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190
             V            FS+  +G      +    F     G+         +    +  + 
Sbjct: 347 ACVRSGYDKQSKTVWFSVADDGPGIPEEQQQSLFQPFTQGDKARGGVGSGLGLAIIKRIV 406

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +  R+     D+  + +   L 
Sbjct: 407 DRHNGRITLRNQDEGGLCVRIDLP 430


>gi|86157005|ref|YP_463790.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773516|gb|ABC80353.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 516

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
           + +     L +  L A+  + ++I H+I +P+ AI  + ELL E                
Sbjct: 270 LDRQRAELLRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLV 329

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105
                         +                 L +I       +  +  A    V  +  
Sbjct: 330 SAISREVDRLNAVTEEYLRFARLPRPQLERHDLNEILGGLLDFLGPELAAARVDVHRALA 389

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160
                +  +  ++          +  ++P GG V +  +   +     ++    G     
Sbjct: 390 PGLPGVRCDEGQLRAVFLNLLRNSREAMPGGGTVRVVTRRVDSGAGVEVELGDTGGGIPP 449

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I +    +      +   +   +  E+   +  E       V +    
Sbjct: 450 GDLT-RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTVFTLRFP 502


>gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 428

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 20/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + K +        L + +   I H+  +P+ +I +S ELL+      +   + +  Q IR
Sbjct: 167 LRKALAQEQEFNHLKSRMIIAISHEYRTPLTSILSSSELLEAYCHRWDKSKQSQHFQRIR 226

Query: 55  LSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +       +  +                 +D  + + D+   ++        + ++   
Sbjct: 227 AAVQRITDLMGNVMFLNKAEFEQLEFQPTPLDLGVFVRDLVDDMQQHYGDKHHLILNIDQ 286

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +      +     +IL +L   A    P GGKV I      N+ IF +  +G      E+
Sbjct: 287 DCGRPLFDSKLLLQILTHLIDNAIKYSPNGGKVLIKFTCQNNQVIFEVSDDGIGIPRKEQ 346

Query: 164 FT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    G+    I    +    V      +   +            + +L +
Sbjct: 347 HNLFNAFHRGSNVENISGTGLGLAIVKKCVDIHGGTISLNSDVSVGTTFTVMLPR 401


>gi|116695400|ref|YP_840976.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113529899|emb|CAJ96246.1| signal transduction histidine kinase [Ralstonia eutropha H16]
          Length = 680

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 61/230 (26%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
           +       ++S  L     L + + H+I +PI  I  +L++  E            ++LI
Sbjct: 434 LRATRQQLITSEKLVVAGHLTAGVAHEINNPIAVIQGNLDVAREILGPAAEPVRHELRLI 493

Query: 54  RLSSMSAIIRLKFMRLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106
                   +    +                    +      +   +     ++V      
Sbjct: 494 DEQVRRIHLLTNRLLQFVRPEAYAGNMERLDAGEVAAGCVDLVQHMLKGASIRVELDCLA 553

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEK 163
             +      E  ++++NL   A  ++P GG +T  +           ++  G+  R  + 
Sbjct: 554 TRQVRISRSELQQVVVNLLTNAIHAMPEGGTLTLGTRDWDGQGVTLHVRDTGHGIREEDV 613

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                            +       L      R+  E            L
Sbjct: 614 PNLFNPFFTTKKQMGTGLGLSISYALVERYGGRITVESAVGQGAEFIVWL 663


>gi|162455442|ref|YP_001617808.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161166024|emb|CAN97329.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 922

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           +A++    + + D   +     + + H++ +P+ AI     L+ +  +  E ++    S 
Sbjct: 514 LAQSEKDRIRAEDANRMKDEFLATVSHELRTPLTAILGWARLIKDKALAPERVKQGMASI 573

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------------- 102
                    +         + +         V    +       +               
Sbjct: 574 ERNAHAQAQIVDDILTVSRIITGKLRLRTIAVDLAAVIEAAVDTITPTAKAKEIEIRVEP 633

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          +++ NL   A    P+ G VT+ V  S ++   S+  NG      
Sbjct: 634 GEGLSHVCGDPDRLQQVMWNLLSNAVKFTPKRGLVTVRVGRSDSQVAISVTDNGKGIATS 693

Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                F +   G+           +    V  L   +   +  E   +      +  L 
Sbjct: 694 FLPYVFDRFRQGDSSPTRAHGGLGLGLAIVRHLVELHGGTVEAESPGEGAGSTFTVTLP 752


>gi|110597378|ref|ZP_01385665.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340922|gb|EAT59393.1| ATP-binding region, ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 372

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 74/225 (32%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
                 +  L  L  + + + H+I +P+ +I  + E+L +       + E + +    + 
Sbjct: 139 EEQLRRAEKLSTLGEMAAVLAHEIRNPLSSIRGTAEILRDDYPTGTPKHEFIDIQIRETE 198

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                ++                 + D  +     V+ D       +Q+      + +  
Sbjct: 199 RLNRVVEEFLHMARQQPMAMKPCRVQDELETIVTLVMNDARKRQVALQLQPNAVAMIVMA 258

Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169
           +     +  LN+ + A  + P GG+VTIS   +++       + +G          +I +
Sbjct: 259 DSEKLRQAFLNIIINALQATPEGGRVTISTTIAEHAFCEIRFRDSGPGV-EKAAMERIFE 317

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  D   +       +   +K  L  E    +   ++  L 
Sbjct: 318 PFFTTKSDGTGLGLAITKNIIENHKGTLKVESEAANGTTVTIRLP 362


>gi|163847651|ref|YP_001635695.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525510|ref|YP_002569981.1| response regulator receiver sensor signal transduction histidine
           kinase [Chloroflexus sp. Y-400-fl]
 gi|163668940|gb|ABY35306.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449389|gb|ACM53655.1| response regulator receiver sensor signal transduction histidine
           kinase [Chloroflexus sp. Y-400-fl]
          Length = 396

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 23/232 (9%)

Query: 6   CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61
              L  +D +     + + H++ +P+ ++   LEL D      +  +  + +R+   S+ 
Sbjct: 160 NAQLQDLDRMKDQFLATLSHELRTPLTSLLGYLELFDRGMLGPLTPQQEEAVRVMRRSSE 219

Query: 62  IRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +  + +               F     +D L  L    +       +   V +S      
Sbjct: 220 VLARQLNNLLYFQEVRSRSLNFVQLQPLDILRPLIAAARERAAQAQLQFEVLLSEMQPIE 279

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                   ++ NL   A      GG+V   V+D     I  ++  G      E   +I  
Sbjct: 280 VDRSAFEHLVRNLLDNAFQYTEPGGRVRFIVRDEPTRLIIRVEDTGIGIPAGE-QEKIFL 338

Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +             +    V  +   +  ++            +  + +
Sbjct: 339 PFYQVDHSLARGHPGSGLGLAIVRHIVEAHGGQIALRSAPGEGSAFTIAIPR 390


>gi|253996018|ref|YP_003048082.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
 gi|253982697|gb|ACT47555.1| multi-sensor hybrid histidine kinase [Methylotenera mobilis JLW8]
          Length = 1230

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  + +   + + H+I +P+ AI    EL+ +  ++ +    +   + SA
Sbjct: 648 LREAKNIAEQAASVKSTFLANMSHEIRTPMNAIIGFTELMLDTEMKPDQQNYVSTINNSA 707

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                              +  +        ++   +      Q  +  + +   +    
Sbjct: 708 KSLLHLLNDILDSAKLEKGMLELEFFDFSMNTLVDSVISTLWLQARKKELDLQLEICDEV 767

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +G     S    ++L+NL   A      G         +++   F +   G      ++ 
Sbjct: 768 SGYYYGPSHRIRQVLMNLVGNAIKFTDIGSVKLKVYAQNQDVIHFDVVDTGIGI-AADRL 826

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +        +        +       L       +            S  L 
Sbjct: 827 DAIFEPFTQADASMSRRFGGTGLGTTISKQLVEAMGGTIKATSQLGKGSCFSINLP 882


>gi|326202142|ref|ZP_08192012.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987937|gb|EGD48763.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 462

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 74/230 (32%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
           ++  N+   + L   L   + H++ +P+  + + LE + +     + E ++      +  
Sbjct: 232 DLAENMEKQEILRKRLTGDVAHELRTPLATLQSHLEAMMDGIWPADSERLKSCHEEIVRI 291

Query: 61  IIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKID 110
              +  +   A   + +    +   DI ++ +  I   +   +S                
Sbjct: 292 SKMVGDLEKLARYESENFVLNMDTFDITELAKRQIHNFESEFLSKGLELKLTGADCRVYA 351

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
              + +++L+NL   A    P GG V I++Q +      S+  NG      +    F + 
Sbjct: 352 DKDKISQVLVNLLSNALKYTPEGGMVVINIQYNDVNTEISVTDNGPGIPGEDLPYIFERF 411

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +           I       +   +   +  +         +  + K
Sbjct: 412 YRADKSRNKLTGGSGIGLAICKSIVLAHGGSINVQSNIGKGTKFTFTIPK 461


>gi|167464654|ref|ZP_02329743.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 463

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 12/216 (5%)

Query: 10  SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            S  L     + + + H+I +P+  I   L+LL +       + ++          +   
Sbjct: 229 KSEKLSVAGQMAAGVAHEIRNPLFIISGFLQLLKKNPGNTSYVDVMITEVERINGIVDDF 288

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKIDLSRERAKIL 119
            L             + DI +        +          V+ +          +  ++L
Sbjct: 289 LLLSRPGDMKMESQKIEDIVEETMRLFQSNAEDIGIEIVLVKEADLPPVFCEPNQLKQVL 348

Query: 120 LNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +N+      ++ +GG++TI +    K+     +   G     PE   +I +    +  + 
Sbjct: 349 INMIKNGMEAMSQGGRITIELTYPLKDYLQIRICDQGEGI-DPEALERIGEPFYTTKENG 407

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +  +L      D       LL 
Sbjct: 408 TGLGLMVSCRIIEYHHGKLNVYSKKDEGSTFEILLP 443


>gi|298482642|ref|ZP_07000826.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271105|gb|EFI12682.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 637

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 59/220 (26%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +  + ++  + + H+I +P+ AI    E++   +    + E +++I+ +S   +  +  
Sbjct: 279 DADKMKSVFLANMSHEIRTPLNAIVGFSEIIAVTESEEEKMEYLEIIQRNSNLLLQLIND 338

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                        + F        +  +  + Q+        K ++              
Sbjct: 339 ILDLSRIESGKSEMHFQQVEIAGLVEEVEKVHQLKMKSNVELKVIRPEGEYWTSTDRNRV 398

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            ++L N    A  +  +G        +        +   G      +             
Sbjct: 399 MQVLFNFLSNAIKNTEKGSITLGLKHE-GPWLKLYVSDTGCGISKEKLPQIFTRFEKLND 457

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +      R+          + +  L 
Sbjct: 458 FVQGTGLGLSICKSIVERLGGRIEVTSELGQGSMFALYLP 497


>gi|7521408|pir||D71379 probable sensory transduction histidine kinase - syphilis
           spirochete
          Length = 394

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---------EVM 50
            K       S  L  L  L + + H+I +P+GA+   L+LL +              + +
Sbjct: 142 KKQEEIYNRSESLANLTNLAATVAHEIKNPLGAMSIHLQLLRKNFSTCSFETNKRIQKHL 201

Query: 51  QLIRLSSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            ++          +       + ++L        D +  + D                  
Sbjct: 202 HVVEEEIERLNRIVTGFLSAVRPLKLNITRLSVFDLVTSIRDTFMKPSPKQNCLSLYICH 261

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                 +      + L+N+   A  ++ RGG + + V    +    S+   G        
Sbjct: 262 TIFPTYEAMNTCRQALVNIITNAKEAMQRGGALEVFVHKQTDHISISISDTGEGIDARNI 321

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I +    +  +   +       +  E+   +            + LL 
Sbjct: 322 HN-IFEPYFTTKTEGTGLGLTLTFKVIKEHGGDISVSSTVGRGTCFTLLLP 371


>gi|127514609|ref|YP_001095806.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella loihica PV-4]
 gi|126639904|gb|ABO25547.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella loihica PV-4]
          Length = 713

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56
           + +     +++  L AL  L + I H+I +P   I  ++ELL        ++V + I + 
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLKSELGDKAEDVEEEIDIV 511

Query: 57  SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSW--- 104
                     +R    Y+                 + ++  ++   I   + V +     
Sbjct: 512 IEQVGRISTIIRSLLQYSRPGEFNAPLEMHQLTPIVEEMAILVRHSIKKQEVVLIQDLNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++   G++ I   D             ++  G    
Sbjct: 572 SYPIEVNRPQLLQVLINLVVNAAHAMDGQGRIWIRTYDWVQGGEPIGVKIEVEDEGKGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+  +I D    +  D   +       +       +          + +  L
Sbjct: 631 PEEQLGRIFDPFYTTRQDGTGLGLSLSYGIIKRIGGTIEVSSTVGKGTLFTIGL 684


>gi|296134421|ref|YP_003641668.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thermincola sp. JR]
 gi|296032999|gb|ADG83767.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thermincola potens JR]
          Length = 524

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 71/226 (31%), Gaps = 18/226 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           MA++    +        L +   H+I +P+ ++   ++LL +      + E + +I    
Sbjct: 304 MARSEKLAV-----AGQLAAGAVHEIKNPLTSVRGFIQLLQQELSGNPKAEYIDIIIAEI 358

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111
                 +              S   +  + + I   +  +  ++     E          
Sbjct: 359 DRVNNIVNEFLKLAKPAVPKRSSCSITALFEEIRVLMESEAFLKNVIIEENFCHLPSVNI 418

Query: 112 -SRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++L+N+   +  ++P+GG++TI  +   ++ +        G      E   +I 
Sbjct: 419 DKEQIKQVLINIIQNSFDAMPQGGRLTIHAEPLKTEKKIKIQFNDTGCGM-DKETQGRIF 477

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +   +  ++  +            L 
Sbjct: 478 EPFFTTKEQGTGLGLAVSQQIIESHGGQIEIDSEPGVGTTTVIFLP 523


>gi|317121611|ref|YP_004101614.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
 gi|315591591|gb|ADU50887.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
          Length = 482

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           +A      L S++    L     S   H++ +P+ AI  +L+LL          + + ++
Sbjct: 229 LAATFNEMLESIETAYRLQQRFVSDASHELRAPLTAILGNLDLLRRRPDLPPEEQAQALE 288

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVS 103
             R  +      +  +         V  +          L   ++           +   
Sbjct: 289 EARREAERLSRLVADLLALARADAGVPLVRKAVDVDAVVLDAFQEARRLAKGQQLVLDPL 348

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
                   +    ++LL L   A    P GG++ + +QD+  + + ++   G        
Sbjct: 349 EPVRIQGDADRIKQLLLILLDNAIKYTPAGGRIVLGLQDAGGDAVLTVADTGVGIPAADL 408

Query: 161 PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P  F +                +       +  ++   +  +        ++  L 
Sbjct: 409 PHVFERFYRADPARSRDPGGTGLGLPIARWIVEQHGGSIAIDSAPGQGTTVTVRLP 464


>gi|228991892|ref|ZP_04151828.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM
           12442]
 gi|228767621|gb|EEM16248.1| hypothetical protein bpmyx0001_26370 [Bacillus pseudomycoides DSM
           12442]
          Length = 458

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57
           K +  ++  +D +     S + H+  SP+ +I    + L             +Q+I   S
Sbjct: 226 KKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEKMTEDERKRYLQIIEGES 285

Query: 58  MSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                  K +                   +         + ++   +K + V +    I+
Sbjct: 286 KRMSSLCKQLLTLASLDKEEKVLQIKEFDVHKQMKDVIFMLEWKWREKDIAVEFDVPSIN 345

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     ++  N+F  +      GG +  +V++ +   + S+  +G      E   +I
Sbjct: 346 VRGDENLLHQVWTNIFTNSIKFTDSGGTIGFAVEELEASVVISISDSGIGMEQEEV-ERI 404

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D            ++   +    V  +   +   +  E I          L K
Sbjct: 405 FDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGEISVESIRGEGTTFRIELPK 458


>gi|16330667|ref|NP_441395.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653159|dbj|BAA18075.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 420

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 59/233 (25%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + +    ++  L +   S + HD  +P+  I  S  LL+E G      Q     +M   
Sbjct: 175 ERELSEAKAANKLKSEFVSMLSHDFRNPLNTILLSAGLLEESGDRLSKGQQHNYFNMIRT 234

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                                       S+D L    D+ +++ +     + +     G 
Sbjct: 235 AIKDLDELLSEVLLLGKTENGQLSCQFESLDLLYFCQDLMRLVNNAQRQPRPIHFHTQGN 294

Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                 +   +   +      A    P    +   V       IF +   G         
Sbjct: 295 LQQGVWDAHLLRHIICNLLSNAIKYSPSPTPILFDVIAEGKTMIFRVTDQGIGIPPQAMA 354

Query: 165 TQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      ++      +    V   A+ +   +  E  +      +  L 
Sbjct: 355 ELFNPFFRADNVEGVTGTGLGLAIVQRCANIHGGEVTVESKEGEGSCFAVRLP 407


>gi|209694927|ref|YP_002262856.1| signal transduction protein, histidine kinase [Aliivibrio
           salmonicida LFI1238]
 gi|208008879|emb|CAQ79088.1| signal transduction protein, histidine kinase [Aliivibrio
           salmonicida LFI1238]
          Length = 675

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLI 53
           + +     + S  L +L  L + I H+I +P   I  + EL+     ++     E +  I
Sbjct: 429 LKQAQDKLIMSEKLASLGELTAGIAHEINNPTAVILGNAELIKYELGDNASVVSEELDAI 488

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTG 106
                      + +       G  D +        +              D  V+  +  
Sbjct: 489 MEQIDRIRNITRSLLQYSRQGGIQDEVTWQYINPIIEESVTLVRTGAHKRDIDVEFDFEQ 548

Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                       ++L+NL M    ++           T   ++     I  ++  G+   
Sbjct: 549 PPRVEVNRHHLLQVLVNLQMNGIHAMKAKGKLIIRSRTWQEEEINLGAIIEVEDFGSGM- 607

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  +I D    +  D   +       L  +    +          V +  L 
Sbjct: 608 SHEQLGRIFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIKVRSQLGEGTVFTIYLP 662


>gi|197117052|ref|YP_002137479.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197086412|gb|ACH37683.1| sensor histidine kinase, HAMP domain-containing, 1-2 putative
           heme-binding sites [Geobacter bemidjiensis Bem]
          Length = 542

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 16/229 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
            +     + S  L +L  L + I H+I +P+  I     L+             ++ +  
Sbjct: 287 TQMQAQLIRSEKLASLGELVAGIAHEINNPLTGILVFASLIQSNKKLDETLRNDIETVIR 346

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI------ 109
            +      +K +      +     L  L DI +     I      Q      +       
Sbjct: 347 ETKRCAGIVKGLLEFARCSPPQKELHSLSDISEAALTLIQHQILFQDVSIIREYASDLPK 406

Query: 110 --DLSRERAKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
               + +  ++L+N+F+ A  ++       +   ++  +      +  NG          
Sbjct: 407 LLIDANQIEQVLVNMFVNAGHAMLGEGVLHIATGMESDEGAAFIRIVDNGCGISEQNLTK 466

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +  E+  R+            +  L 
Sbjct: 467 IFDPFFSTKANKGTGLGLSVSYGIVQEHGGRIDVTSEIGVGTAFTVTLP 515


>gi|307267066|ref|ZP_07548579.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306917897|gb|EFN48158.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 456

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 68/223 (30%), Gaps = 24/223 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I   +E L     +     D+ + +I   S      +  
Sbjct: 225 EKIRSEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARDKFLDIIDFESERLTRLIND 284

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEK---IDLSRE 114
           +              T  ++    + DI  +++      +  ++                
Sbjct: 285 ILTLSEIENVKEGYPTEEIELDNEIEDILYIMDKVARNKNITLKKDLNCTDLVINTNKDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL        P GG V +S ++  ++ I  ++ NG      E   ++ +     
Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVEDNGIGI-SKENIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                  +    +    V  +    K  +  E           
Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVEYMKGEIFVESEVGRGTKFII 446


>gi|218886793|ref|YP_002436114.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757747|gb|ACL08646.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 591

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 16/227 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57
             N+   L  +  + A+  L + + H+I +P+ AI      LL    +++     +++  
Sbjct: 342 RTNMEIRLQQAEKMAAIGELSTYVAHEIRNPLFAIGGFANSLLRSPSLDEAARGKVQVIL 401

Query: 58  MSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWT-----G 106
             +      ++    +               L      +       +R+ V         
Sbjct: 402 EESRRLDTILKSILNFARPTSPRTGEVDLNLLARQTMELMSMGFDQRRITVDMQLAPDIP 461

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         + L+NL   A  ++P GG++T+    ++     ++   G     PE   +
Sbjct: 462 KAHGDGEMLKQCLINLVKNAQEAMPAGGRLTVRTGMNQQHVHIAVADTGVGI-PPELHDK 520

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           I      +      I       +  E   R+  +        ++  L
Sbjct: 521 IFSPFFSTKEKGAGIGLAMSRKIIEEMGGRVDLQSQVGKGTTITLHL 567


>gi|254487932|ref|ZP_05101137.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
 gi|214044801|gb|EEB85439.1| two-component hybrid sensor and regulator [Roseobacter sp. GAI101]
          Length = 529

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 64/237 (27%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           M  +I   ++     A   S + H++ SP+ +I  ++ LL       +  + + L+ ++ 
Sbjct: 274 MLNDITDRMAEERKQADFVSMVSHELRSPLTSIKGAMGLLLSRAAGELSPQAVGLLEIAH 333

Query: 58  MSAIIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            +A   +  +                       S      L       +      + + +
Sbjct: 334 RNADRLVLIINDILDMEKISSGRLDFDIKEFDVSEMVHEALRSNAATQQRSGVNIRCIGL 393

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                    S    ++L+NL   A      G  + + V+   +    S++  G      +
Sbjct: 394 DVPHMIQTDSNRIIQVLINLMSNAAKFSKPGATIEVMVERLASGVRVSVRDEGTGIPEKD 453

Query: 163 KF---TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  D             +       +       +  E  +         L 
Sbjct: 454 HHKIFQRFADMANSDRGAKGGTGLGLSICKAIVEGLGGTISFESREGEGTTFMFTLP 510


>gi|210634652|ref|ZP_03298204.1| hypothetical protein COLSTE_02128 [Collinsella stercoris DSM 13279]
 gi|210158724|gb|EEA89695.1| hypothetical protein COLSTE_02128 [Collinsella stercoris DSM 13279]
          Length = 480

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 71/237 (29%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA ++  +L        L S + H++ +P+ A+  ++E + +     + E ++ +   + 
Sbjct: 235 MAASLERDLKRER---RLTSDVAHELRTPLMAMQATVEAMQDGVYPTDAEHLETVAAETR 291

Query: 59  SAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108
                ++                +D +  +   + ++ +   +     +           
Sbjct: 292 RLARLVQQTLDLSRLENHTAPLRLDQVDMVQLTQTIVNNQHQLFHNKGLHLRFVDEMEGR 351

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               I  +    + ++NL   A    P  G V +SV   +   + ++   G      +  
Sbjct: 352 SAVIICDADMITQCIINLMSNAMRYTPEDGWVVVSVHGDRKHVMVTVSDTGIGIAKDDL- 410

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I                   +       +   +   +  E   +     +  L +
Sbjct: 411 ARIFGRFWRADASRAREAGGLGVGLAVTKQIVERHHGFIAVESELEKGTTFTIHLPR 467


>gi|126656540|ref|ZP_01727801.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
 gi|126622226|gb|EAZ92933.1| sensory box histidine kinase/response regulator [Cyanothece sp.
           CCY0110]
          Length = 389

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53
           + +       + ++  L     S I H++ +P+ AI     +L     +       +++I
Sbjct: 150 LVQEQKARAEAENMNRLKDEFLSTISHELRTPLNAILGWSGILQSKNLDEAEIRRALEII 209

Query: 54  RLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
             ++ S    ++ +         R+           +    I+ +     A + R+Q   
Sbjct: 210 ERNAKSQAHLIEDLLDVSQIVTGRMRLHVRAIELLPVIEAAIDTLKPAADAKNIRLQAVL 269

Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--- 158
                 +  +     +I+ NL   A    P+ G V I++Q   +     +   G      
Sbjct: 270 DPAASPVLGDSERLQQIVWNLLSNAVKFTPKHGCVQIALQQINSHVEIVVADTGQGISAE 329

Query: 159 --RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
              +  +  +  + ++  +     +    V  L   +   +  E   +      +  L 
Sbjct: 330 FLPYVFERFRQANTSMTRSFGGLGLGLAIVRQLVELHGGTVQAESPGEGQGATFTVKLP 388


>gi|95929610|ref|ZP_01312352.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134307|gb|EAT15964.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 532

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 70/225 (31%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61
           +   + S  L     L S + H+I +P+  I  S +LL  E  + D   +L+        
Sbjct: 305 LDQMIQSEKLAEIGRLSSGVAHEINNPLEVISYSAQLLLREESLSDFHQELLTRIGSEVE 364

Query: 62  IRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                      F R        +D    L  +   I   I   +   V   GE   +  +
Sbjct: 365 RLQALTSGLLGFSRSGSMKKSRIDVNEVLEQVLTFIGYQIQRGQHEVVRDYGEVPAIMAD 424

Query: 115 RAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +   + +NL M A  ++   G +T++ +         +   G+         +I +  
Sbjct: 425 PNQLKQVYINLIMNAVQAMKAPGIITLTTRALPYGVEIDISDTGDGV-EEAIRDKIFEPF 483

Query: 172 VESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +     +  Y    +  +++  L  E            L 
Sbjct: 484 YTTKPEGEGTGLGLYLCRKIMSDHEGSLNFESTLGEGSRFIIRLP 528


>gi|301309880|ref|ZP_07215819.1| signal transduction histidine-protein kinase AtoS [Bacteroides sp.
           20_3]
 gi|300831454|gb|EFK62085.1| signal transduction histidine-protein kinase AtoS [Bacteroides sp.
           20_3]
          Length = 416

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 70/227 (30%), Gaps = 26/227 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMSAII 62
            L  L  L +   H+I +P+ AI ++++ L +          +  E++  +   +     
Sbjct: 187 RLATLGELAAGAAHEIRNPLTAIRSTIQYLSKDFSADPVKSEMATELISEVERINKIVQG 246

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAKI 118
            L F R +   +  V+    +     ++ + +   +                 + +  ++
Sbjct: 247 LLSFARPSALNSSEVNLEQLINQTLLLVHNTLKKQQVEVEFEYFHENTALQADAEQLKQV 306

Query: 119 LLNLFMVAHASLPRGGKVTIS-----------VQDSKNENIFSLKINGNLARFPEKFTQI 167
            LN+ + A  ++ +                  + D  +  + S + +G      +    I
Sbjct: 307 FLNIILNAVEAMSQNPPERSRTLIISIEKGASIDDHSHYLLLSFEDSGKGIGEKDL-DHI 365

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  +   +       + + ++  +            +  L 
Sbjct: 366 FNPFFTTKDEGTGLGLAICYGIINRHEGEIEVHSTPGKGTCFTIKLP 412


>gi|262381399|ref|ZP_06074537.1| signal transduction histidine-protein kinase atoS [Bacteroides sp.
           2_1_33B]
 gi|262296576|gb|EEY84506.1| signal transduction histidine-protein kinase atoS [Bacteroides sp.
           2_1_33B]
          Length = 416

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 70/227 (30%), Gaps = 26/227 (11%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMSAII 62
            L  L  L +   H+I +P+ AI ++++ L +          +  E++  +   +     
Sbjct: 187 RLATLGELAAGAAHEIRNPLTAIRSTIQYLSKDFSADPVKSEMATELISEVERINKIVQG 246

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAKI 118
            L F R +   +  V+    +     ++ + +   +                 + +  ++
Sbjct: 247 LLSFARPSALNSSEVNLEQLINQTLLLVHNTLKKQQVEVEFEYFHENTALQADAEQLKQV 306

Query: 119 LLNLFMVAHASLPRGGKVTIS-----------VQDSKNENIFSLKINGNLARFPEKFTQI 167
            LN+ + A  ++ +                  + D  +  + S + +G      +    I
Sbjct: 307 FLNIILNAVEAMSQNPPERSRTLIISIEKGASIDDHSHYLLLSFEDSGKGIGEKDL-DHI 365

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  +   +       + + ++  +            +  L 
Sbjct: 366 FNPFFTTKDEGTGLGLAICYGIINRHEGEIEVHSTPGKGTCFTIKLP 412


>gi|222053139|ref|YP_002535501.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
 gi|221562428|gb|ACM18400.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter sp. FRC-32]
          Length = 478

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 23/231 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAII 62
           +    +  M     + S + H++ +P+ A+    E L E  ++   ++            
Sbjct: 248 SERKEIEQMK--DEMISAVSHEMRTPLTAMLGFTEYLLENEVDPSQLKNYLNTIYKETAR 305

Query: 63  R-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKI 109
                           R+       +D  + + D   +        + V           
Sbjct: 306 LKELIGNFLDLQQINARMTTYRMHPLDVCLLIKDAAGLFALDYDSGRLVVQCPRNIPPLQ 365

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++L NL            +VT+  +   ++ +  +K  G     PE   +I +
Sbjct: 366 GDEARLHQVLTNLISNGLKYSQAPARVTVGAEAEGDQVVVWVKDEGCGI-PPELQEKIFE 424

Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       I    +    V  +   +  R+               L 
Sbjct: 425 KFYRIDNTDRRHIGGTGLGLALVREIVAAHGGRVWVTSEVGRGSTFFISLP 475


>gi|91201393|emb|CAJ74453.1| similar to ammonium transport protein amtB possibly fused to
           histidine kinase [Candidatus Kuenenia stuttgartiensis]
          Length = 679

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 69/234 (29%), Gaps = 26/234 (11%)

Query: 6   CFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSS 57
              L     L +   + + H++ +P+ AI    E+L +          ++ V  +     
Sbjct: 441 NVALEKANRLKSEFLTTMSHELRTPLNAIIGFAEVLRDEIAGSLSKDQKEYVTDIHSSGH 500

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKI 109
               +    + L+   TG +        IE         +          V  +      
Sbjct: 501 HLLDMINNILDLSKIETGKMHLQYEEFCIEDAINDTLTIINASANNKGISVHTNIQDNTP 560

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            LS +     +IL NL   A    P  GK+TI+V    N   F +   G     PE   +
Sbjct: 561 LLSADKTKFRQILYNLLSNAVKFTPENGKITINVFQKDNSLQFEIVDTGIGI-KPEDKEK 619

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +             +   +  +    L   +  ++  E           +L 
Sbjct: 620 LFEAFHQADASLTREYEGTGLGLHLTKRLVELHGGKIWAESTFGKGSTFFFILP 673


>gi|302386942|ref|YP_003822764.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302197570|gb|ADL05141.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 461

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 66/222 (29%), Gaps = 17/222 (7%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMR 68
              L   + + + H++ +P+ A+ + LE + E       + ++            ++ + 
Sbjct: 238 QEKLRKQMTADVAHELRTPLTALGSHLEAMIEGLWDPTPKRLKSCHEEVKRLGTLVEDLG 297

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------WTGEKIDLSRERAKI 118
                      L         I   ++   + ++S                      +++
Sbjct: 298 QLAKIEDENLVLNKTRTDLLEIVRTVSDTMKGEISKKNLTISIGGSPVFAQADKNRFSQV 357

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES- 174
           + NL   A    P GG + I V ++    I  +  +G      E    F +    +    
Sbjct: 358 IANLLSNAVKYTPEGGVIGIVVSETDRLGIVKIMDSGIGISEKELPFIFERFYRTDKSRN 417

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  I    V  +   +   +  E +++     +  + K
Sbjct: 418 RKSGGAGIGLAIVKSIVEAHGGTVTAESVEEQGSSFTVSIPK 459


>gi|172058670|ref|YP_001815130.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171991191|gb|ACB62113.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 847

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 61/231 (26%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           +++     +  +     S + H++ +P+ +I+   EL+     +   + + +  I   + 
Sbjct: 606 RDVTKETEADRMKEEFVSTVSHELRTPLSSIYGFTELMLNREIDPPKQRKYLTTIHSETG 665

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKI 109
                +           S                             +   +        
Sbjct: 666 RLTTLVNDFLDVQRMESSEQRYQMATFDLVQLAAELIDFHDASHTTHELSFEAVGPIMID 725

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             + +  ++L NL   A    P GG V I +++       +++  G      E  +++ D
Sbjct: 726 ADAEKIKQLLNNLLSNAIKYSPDGGNVAIRIENHDGFAEITIRDQGIGI-PQEAMSKLFD 784

Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       I    +       +   +   +  E         +    
Sbjct: 785 KFYRVDNSETRKIGGTGLGLSICKEIVKHHNGTIDVESTIGAGSTFTIRFP 835


>gi|296331522|ref|ZP_06873993.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674175|ref|YP_003865847.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151335|gb|EFG92213.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305412419|gb|ADM37538.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 428

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 77/223 (34%), Gaps = 13/223 (5%)

Query: 4   NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60
           N      S  L   + L + I H++ +P+ ++   L+++  +         +I       
Sbjct: 202 NERLARESQKLSITSELAAGIAHEVRNPLTSVSGFLQIMKTQYPDRKGYFDIIFSEIKRI 261

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTGEKIDL 111
            + L  + L          +  L +I + +            I ++K  + +        
Sbjct: 262 DLVLSELLLLAKPQAVTFKMHQLNEILKQVTTLLDTNAILSNIVIEKNFKETDGCIINGD 321

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++ +N+      ++P+GG VTIS   + +  + S+K  GN     EK  QI    
Sbjct: 322 ENQLKQVFINIIKNGIEAMPKGGVVTISTAKTASHAVISVKDEGNGM-PQEKLKQIGKPF 380

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +     + +  E+   L  E       V   +L 
Sbjct: 381 YSTKEKGTGLGLAICLRILKEHDGELKIESEAGKGSVFQVVLP 423


>gi|37523131|ref|NP_926508.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
 gi|35214134|dbj|BAC91503.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
            7421]
          Length = 1225

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 26/238 (10%)

Query: 2    AKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
             ++    L       +L + L +   H+  +P+  I  S +LL          + ++   
Sbjct: 982  QQSQQMALQKEYELNELKSRLIAMTSHEFRTPLSTIILSTQLLSSDSPHQSAQKRLKQQQ 1041

Query: 58   MSAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                   +               +         +D       + + ++       R    
Sbjct: 1042 RIERAIEQMTDLLDGILSIGQAEIDQVQIRRVPLDLESFCRQLVEEMQAAPGGAHRPAFE 1101

Query: 104  WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              G+    + +     +IL NL   A         V + +     + +F++   G     
Sbjct: 1102 SAGQCRGANLDAVMLRQILSNLLTNALKYSAPDSTVRLQLACRDGQAVFTVVDEGIGIAV 1161

Query: 161  PEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   ++ +          I    +    V  L    K RL  E         +  L 
Sbjct: 1162 -EDQERLFEPFYRGRNVANIPGSGLGLAIVRRLVELLKGRLAFESRPQQGTTFTVALP 1218


>gi|282897782|ref|ZP_06305781.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197461|gb|EFA72358.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 421

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           ++I        L     S + H++ +P+ AI  +LE+L      DE    ++++++   +
Sbjct: 185 QDISEQHEVEQLKNEFVSVVSHELRTPLTAIKGALEILATGILVDEPREAEQMLKIAVSN 244

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           S   +      + L    +G +   + L DI  +++  +   + +      E    + + 
Sbjct: 245 SERLLRLVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQKRMEISYSTLDV 304

Query: 116 A------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L NL   +      G KV I  +    E I ++K  G      + 
Sbjct: 305 HNSKILADEETIIQVLTNLLSNSVKFSHAGTKVEIYTKMGDKEIIIAVKDYGKGIPADKL 364

Query: 163 --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +V          +       +  +++ ++  E   D        L 
Sbjct: 365 KTIFERFEQVDVSDARQNGGTGLGLAICKNIVEKHQGKIWIESTLDSGSTFYFTLP 420


>gi|323703868|ref|ZP_08115502.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531156|gb|EGB21061.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 558

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           K     ++S  LVA+  + + + H++ SP+  +  + +++           E +  I   
Sbjct: 316 KMEAQLVNSAKLVAIGEMAAGVAHELNSPMTVMIGTAQMMQRDLPKDDPRHEWLDDIISC 375

Query: 57  SMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDL 111
            M         L F R         +    +  +  +I   I  +   ++         +
Sbjct: 376 GMRCKKIIQNLLSFSRQGQFSVAETNVNEQVEKVLSLIHYQINRNNIDIRKKLDPSLPHI 435

Query: 112 SRERAKILLNLFM---VAHASLPRGG-------KVTISVQDSKNENIFSLKINGNLARFP 161
                ++   +      A  +L                 Q  K+  +  +K NG     P
Sbjct: 436 MANGHQLQQVIINLLLNARDALEETSGQKSIVITTFTRKQQDKDWVVVEVKDNGQGI-AP 494

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    S        +     + +A  +   +  E           +L 
Sbjct: 495 ENLQKIFNPFYTSKEASKGTGLGLSVSLGIAQSHGGTIEVESELGVGSTFRLVLP 549


>gi|86157753|ref|YP_464538.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774264|gb|ABC81101.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 375

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 74/242 (30%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            +++      +  L A+  + + + H+I +P+ A    L +L+      E   +  +++ 
Sbjct: 133 KRDLASRAQMAEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRIQKLEAERQGPLLEP 192

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQV 102
           + L           +     +    + +    ++  VI   +           V    ++
Sbjct: 193 LTLVKDEIRRLDHILEDFLQFARPREFVRKAIEVAPVITKVVDLLGGEAERRGVRLEREL 252

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------LPRGGKVTISVQDSKNENIFSLKI 153
                         ++L+NL + A  +           R     +   D+       +  
Sbjct: 253 EPVPPVAGDEERLRQVLVNLCLNALEAVDARGLVRVSCRPAPADVDHPDAAPMVDILVDD 312

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G     P++  +I +    +      +    V  +  ++   +  E   +     +  L
Sbjct: 313 DGPGV-SPDQRDRIFEPFFTTKARGSGLGLSIVHAIVTQHGGTIRIEDSPEGGARFTLRL 371

Query: 214 EK 215
            +
Sbjct: 372 PR 373


>gi|323703118|ref|ZP_08114772.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531895|gb|EGB21780.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
          Length = 687

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 74/221 (33%), Gaps = 12/221 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     L S+ L+  + + I H++ +P+  +   L+L+       +  +  +L      
Sbjct: 465 TQEEMQRLDSLGLLGKMAAGIAHEVRNPLTTVRGFLQLMKGKEDSTKHKEYFQLMIDELD 524

Query: 62  I----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                        +  +           +  +  +       +A +  V+++     +  
Sbjct: 525 RANSIITEYLSLARKNKTELESNNLNTIIKDIEPLITADAIHMAKNIEVKLTDIPNLLLN 584

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +E  +++LNL      ++P GG +T+       + + ++K  G     PE   ++    
Sbjct: 585 RKEINQLILNLVRNGLEAMPEGGTLTVKTFKDGEQVVLAVKDQGPGI-KPEVIKKLGTPF 643

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           V +  +   +       +A+ +   +  E         +  
Sbjct: 644 VTTKENGTGLGLAVCYGIANRHNATIDVETGP-AGTTFNVR 683


>gi|228994391|ref|ZP_04154270.1| hypothetical protein bpmyx0001_50980 [Bacillus pseudomycoides DSM
           12442]
 gi|228765352|gb|EEM14027.1| hypothetical protein bpmyx0001_50980 [Bacillus pseudomycoides DSM
           12442]
          Length = 577

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 72/225 (32%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            K       S  L A+  L + + H++ +P+  I   ++L       +D+   L+     
Sbjct: 334 KKTEELLNKSDTLAAIGQLAAGVAHEVRNPLTVIKGFIQLFQINQEDQDKYFDLMLSEIE 393

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTG---EKID 110
                L                  L  I +     +    I  + ++ +           
Sbjct: 394 RIEAILHEFLSIAKTDVISTEKKNLCSILKNVVSLINTKAIMTNIQIDLHIESKELMIDC 453

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +N+   +  ++P GG+++I V+ S+ E    ++   G      E+  ++ +
Sbjct: 454 CENQLKQVFINILQNSIEAMPNGGEISIYVKKSEREEVTINMVDEGVGI-PEERIKRLGE 512

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      I       +   ++ R+           ++  L 
Sbjct: 513 PFYSTKEKGTGIGLMLSYKIIESHQGRISIMSEVGIGTSVTIYLP 557


>gi|42525106|ref|NP_970486.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
 gi|39577317|emb|CAE81140.1| hypothetical protein Bd3779 [Bdellovibrio bacteriovorus HD100]
          Length = 449

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 67/236 (28%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     LSS+   +   S + H+I +P+ +I    ++L +  ++ +    ++     + 
Sbjct: 213 AREEALQLSSIK--STFLSNMSHEIRTPLNSIIGFSDILRDTRLDKDQTDYVQTIQRCSD 270

Query: 62  IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L                +++        +    +  I +       +   V +  +  
Sbjct: 271 SLLHIINDVLDISKIENGLLQIDRHKFDVKELHTDIFKIFEAKCQEKNLQLEVDIDESIP 330

Query: 108 KID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKF 164
                 S    +IL+NL   A     +G       +   +   ++ +   G   R  E  
Sbjct: 331 AFALGDSHRLRQILMNLVGNAVKFTDKGRVCISLQRQPGSGHYVWKVSDTGRGIRL-ENM 389

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +++          +  T     +       L       +  E            L 
Sbjct: 390 SKLFRSFSQEDVSISRTYGGSGLGLMICKNLVEMMGGDIKVESKLGEGTTFHFTLP 445


>gi|227891714|ref|ZP_04009519.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC
           11741]
 gi|227866517|gb|EEJ73938.1| two-component sensor kinase yycG [Lactobacillus salivarius ATCC
           11741]
 gi|300213969|gb|ADJ78385.1| Sensor protein [Lactobacillus salivarius CECT 5713]
          Length = 627

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 66/230 (28%), Gaps = 32/230 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++ + +E L++          E +++ +  +   I  +  +    
Sbjct: 385 QFVSNVSHELRTPLTSMRSYIEALNDGAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLS 444

Query: 72  GY-------------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                                       + L   +    D    +  ++  +T   + + 
Sbjct: 445 RMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVE 504

Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +     +++ N+   A    P GG +T  + ++ N  I S+   G      +       
Sbjct: 505 LDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDR 564

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +   +  R+  + ++         L 
Sbjct: 565 FFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 614


>gi|90961026|ref|YP_534942.1| two-component sensor kinase yycG [Lactobacillus salivarius UCC118]
 gi|90820220|gb|ABD98859.1| Two-component sensor kinase yycG [Lactobacillus salivarius UCC118]
          Length = 621

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 66/230 (28%), Gaps = 32/230 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++ + +E L++          E +++ +  +   I  +  +    
Sbjct: 379 QFVSNVSHELRTPLTSMRSYIEALNDGAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLS 438

Query: 72  GY-------------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                                       + L   +    D    +  ++  +T   + + 
Sbjct: 439 RMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRDFTKRDLWVE 498

Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +     +++ N+   A    P GG +T  + ++ N  I S+   G      +       
Sbjct: 499 LDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDR 558

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +   +  R+  + ++         L 
Sbjct: 559 FFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 608


>gi|322384703|ref|ZP_08058371.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150402|gb|EFX43895.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 638

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 66/216 (30%), Gaps = 12/216 (5%)

Query: 10  SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            S  L     + + + H+I +P+  I   L+LL +       + ++          +   
Sbjct: 404 KSEKLSVAGQMAAGVAHEIRNPLFIISGFLQLLKKNPGNTSYVDVMITEVERINGIVDDF 463

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKIDLSRERAKIL 119
            L             + DI +        +          V+ +          +  ++L
Sbjct: 464 LLLSRPGDMKMESQKIEDIVEETMRLFQSNAEDIGIEIVLVKEADLPPVFCEPNQLKQVL 523

Query: 120 LNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +N+      ++ +GG++TI +    K+     +   G     PE   +I +    +  + 
Sbjct: 524 INMIKNGMEAMSQGGRITIELTYPLKDYLQIRICDQGEGI-DPEALERIGEPFYTTKENG 582

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +  +L      D       LL 
Sbjct: 583 TGLGLMVSCRIIEYHHGKLNVYSKKDEGSTFEILLP 618


>gi|78224470|ref|YP_386217.1| GAF sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195725|gb|ABB33492.1| GAF sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 608

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 57/232 (24%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + +     L    L A+  + + I H+I +P+ ++      L      + E  Q   L +
Sbjct: 375 LHETQERLLQGEKLAAIGQMAAGIAHEIKNPLVSVGGFAGRLKRRFPADTEEWQYADLIT 434

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKI 109
                    +     ++           I Q+IED              +V+        
Sbjct: 435 REVQHLETMLTDILFFSKKTTICYSRCSINQIIEDALSVVALPIEEKGIKVEKILASRLP 494

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFSLKINGNLARFPE 162
            +  +  +I      +   +                +  D        +   G       
Sbjct: 495 SVLGDYQQIRHVFINLFSNANDVMEPGGVLEIESLPAQIDGSRAVSVKVSDTGAGILLEH 554

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             T +      +      +       +   +   +  +  +      + ++ 
Sbjct: 555 IHT-LFSPFFTTKEKGTGLGLAIAHKIITAHGGTITVKNRETGGAEFTVVIP 605


>gi|89897062|ref|YP_520549.1| hypothetical protein DSY4316 [Desulfitobacterium hafniense Y51]
 gi|219667067|ref|YP_002457502.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|89336510|dbj|BAE86105.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537327|gb|ACL19066.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 503

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 19/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55
           +  +      + + +    +   H++ +P+ +IH  LE+L    +         +  +  
Sbjct: 269 LESSFTAEKEAKEQMRRFVADASHELRTPLTSIHGFLEVLLRGAMNQPDKLQKSLTSMYA 328

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGE 107
            S      ++ + L      S              L    Q+       + ++ ++    
Sbjct: 329 ESERMKKLIQDLLLLAKLDRSPYLEKSEKDIGVLILEMEPQLRMLAEEREIQLDLAPEEL 388

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLA---RFPEK 163
                 +  +++LNLF  A         +      S+      +++ NG        P  
Sbjct: 389 VPIDVDKMKQVILNLFHNAVQHTDPDKGLIQISLKSEASGVELTVQDNGPGIPEEHLPHL 448

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +       L   +   L  E            L K
Sbjct: 449 FERFYRSDSSRTRKYGGAGLGLAITHSLVELHGGTLRVESKVGEGSRFIVGLPK 502


>gi|315186291|gb|EFU20052.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 466

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             S + H++ +PI  +   LE L     D+       ++     +      ++ +     
Sbjct: 249 FVSSVSHELKTPITTVLGYLETLKDLPPDDEATRTRFLETALSHTHRLHQIIEDLLLLSR 308

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLNL 122
                A            +    +++         + +    +           + L NL
Sbjct: 309 IEQAEAPVPLERAPLAPLIRRAMELLRQTRGETHPLTLEGPEDLALPLNPGLMVQALYNL 368

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
              A    P G  V +  + + +  +  ++  G     PE   +I +           + 
Sbjct: 369 IHNAVTHTPPGTPVVVRWRGTGSSVLIQVEDRGPGI-PPEALPRIFERFYRVDASRARST 427

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   ++  +            +  L 
Sbjct: 428 GGTGLGLSIVKHIVQAHRGEVSVASTPGEGTTFTIRLP 465


>gi|322420721|ref|YP_004199944.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127108|gb|ADW14668.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 402

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                + +  + ++  L + + H+I +P+ ++    E L     +++ +       +   
Sbjct: 164 QELQLVQAEKMSSIGVLAAGVAHEINNPLASVAGYAEALLRRFRDEQWLSEDERFQVFKK 223

Query: 62  IRLKFMRLAFGYTGSVD---------------------SLIGLGDIEQVIEDFIAVDKRV 100
                M+  +   G +D                         L  +              
Sbjct: 224 YLEVIMKETYRCKGIIDSLLTFSRKPEGCVGRVNLNLVLQEVLELVRYKSRYEQVKIDFS 283

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +I +NL + AH ++   G + IS   +    +  +K +G     
Sbjct: 284 KQEDLPPVYAEDSGLRQIFMNLLLNAHQAISGPGVIEISTFCADGMGVARIKDSGCGIEP 343

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   QI +    +        +       L  +    +  E         +  + 
Sbjct: 344 QQL-DQIWNPFFTTKTVGQGLGLGLAITYDLVKKQGGEIQVESQLGEGSTFTVRMP 398


>gi|163748871|ref|ZP_02156123.1| sensor histidine kinase [Shewanella benthica KT99]
 gi|161331645|gb|EDQ02450.1| sensor histidine kinase [Shewanella benthica KT99]
          Length = 691

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLI 53
           + +     +++  L AL  L + I H+I +P   I  ++ELL     ++     E ++L+
Sbjct: 438 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLKSELGDNAAIVEEEIELV 497

Query: 54  RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                     ++ +                     +  +  + +       V    +++ 
Sbjct: 498 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQLTPIIEEMLVLVRHSIQEKEVILSQELNA 557

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++                D        ++  G    
Sbjct: 558 SYPIEVNRPQLLQVLINLVVNAAHAMDEQGRIWIRTYDWVHMDEPIGVKIEIEDEGRGI- 616

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E  ++I D    +  D   +       +       +          + +  L
Sbjct: 617 PQELLSRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVTSTVGKGTLFTIGL 670


>gi|83311112|ref|YP_421376.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945953|dbj|BAE50817.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 848

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 54/235 (22%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  + +   + + H++ +P+  I    EL+ +   +DE  +   +   S+
Sbjct: 607 LDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEAADDETRENADIIEKSS 666

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 + +       + +              I +  RV    
Sbjct: 667 RHLLELVNSILDIAKIEAGAMTLSIQEVKLAPLVAEAAAVHQSAAQGKGITLSSRVAGDC 726

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +IL NL   A      G           +   F +   G         
Sbjct: 727 PATIQADPLRLRQILHNLLSNAVKFTETGEVALSVDLQPDHLV-FKVSDTGAGIPEAMLH 785

Query: 165 T-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 + VD  +  +     +       L       +  E            L 
Sbjct: 786 AIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGVIGVESTVGKGTTFHFTLP 840


>gi|261419856|ref|YP_003253538.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319766670|ref|YP_004132171.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261376313|gb|ACX79056.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317111536|gb|ADU94028.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 430

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 70/224 (31%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +A+     +  M +V+ + + I H+I +P+  +   ++LL         E+  +++    
Sbjct: 193 LARAELMKMEKMQIVSQMAASISHEIRNPLTVVKGFIQLLQTGRLPRETEERYIRIALEE 252

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111
              A   ++               I +          +          V  S     +  
Sbjct: 253 LERAEAIIRDYLTFAKPAPKETEPIDVAVELQKVLQMITPMAHMHSIHVSSSLEHGVVIG 312

Query: 112 SRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           + +  +    NL   +  ++P GG + ++ ++     + ++  NG      E+  +  + 
Sbjct: 313 NVQYFQQCFLNLLKNSIEAMPNGGTLHVAAENRGASVVITISDNGVGM-TKEQVRRFGEP 371

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +     + +  +       E        L+  L 
Sbjct: 372 YFSTKEKGTGLGAMVAVKIIEQMGGTWAIESAVQKGTTLTVTLP 415


>gi|118581752|ref|YP_903002.1| integral membrane sensor signal transduction histidine kinase
           [Pelobacter propionicus DSM 2379]
 gi|118504462|gb|ABL00945.1| integral membrane sensor signal transduction histidine kinase
           [Pelobacter propionicus DSM 2379]
          Length = 480

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 2   AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQ 51
            + +   L  +  L  V  L S I H+I +P+  I  +++ L E  +         E+ +
Sbjct: 233 REALEKRLYEAEHLSRVGQLASGIAHEIRNPLNYISLAIDHLKEEMLPHCAGAQRAEMEE 292

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVS 103
           L              +     Y   +     L             + +       R++  
Sbjct: 293 LADKIKEEVRRANYMVVNFMSYGRPLKLRHALVPYSDVLAKALPVLHDRLTEQRIRLEQR 352

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +   L  ++  +   +      A  ++P GG +T+  +   ++   +    G   R 
Sbjct: 353 IPDDFPPLWVDQEMLRTCILNLVGNAVQAMPGGGLITLGAERDHDQVRLTFSDQGKGIRA 412

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I      +      +       +  E+   +  +         + LL 
Sbjct: 413 EDLG-KIFQPYFTTREVGIGLGLAITERIVREHGGSIQVDSTLGSGTTFTLLLP 465


>gi|225851081|ref|YP_002731315.1| sensor histidine kinase/response regulator [Persephonella marina
           EX-H1]
 gi|225645164|gb|ACO03350.1| sensor histidine kinase/response regulator [Persephonella marina
           EX-H1]
          Length = 678

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQL 52
            K     L +     +  L + + HDI +P+ AI           E L +  + +   ++
Sbjct: 447 EKLEAQLLQTEKHAVIGKLAAGLSHDIKNPLTAISAYAFTVKKRGEKLKDKTLINLGEKI 506

Query: 53  IRLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTG 106
              S          L + + ++     VD    L                    ++    
Sbjct: 507 ENNSRRAEDIINKLLNYAKPSYYKEKKVDLREVLNTSIDFSIPASKRKNIKINKRLEKGV 566

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++ +NL + A  ++   G + IS++ + N  +  ++ +G          +
Sbjct: 567 FVYGDPGSLQQVFINLIINAAEAMNYSGNIWISLRKNGNRAVIKIRDSGEGIPDS-IKDE 625

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +      +    V  + ++++  +  E  +         L 
Sbjct: 626 IFDPFFTTKEKGTGLGLSVVKRIVNDHRGEIDFESKEGEGTEFIIKLP 673


>gi|291483991|dbj|BAI85066.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 427

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 74/222 (33%), Gaps = 12/222 (5%)

Query: 4   NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60
           N      S  L   + L + I H++ +P+ ++   L+++  +     +   +I       
Sbjct: 202 NERLARESQKLSITSELAAGIAHEVRNPLTSVSGFLQIMKTQYPDRKDYFDIIFSEIKRI 261

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------GEKIDLS 112
            + L  + LA     +  +      ++QV            +                  
Sbjct: 262 DLVLSELLLAKPQAITFKTHQLNEILKQVTTLLDTNAILSNIVIEKNFKETDGCMINGDE 321

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++ +N+      ++P+GG VTIS   + +  + S+K  GN     EK  QI     
Sbjct: 322 NQLKQVFINIIKNGIEAMPKGGVVTISTAKTASHAVISVKDEGNGM-PQEKLKQIGKPFY 380

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +     + +  E+   L  E       V   +L 
Sbjct: 381 STKEKGTGLGLPICLRILKEHDGELKIESEAGKGSVFQVVLP 422


>gi|219849102|ref|YP_002463535.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543361|gb|ACL25099.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 475

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 76/235 (32%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +       L S  L A+  L + + H+I +P+ A  NSL L+++       +   + + +
Sbjct: 231 LNAAQAQLLQSAKLAAVGELSASVAHEINNPLYAARNSLYLVEQDLPPDAPQRTFLTIAQ 290

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWT 105
                    +  MR  +  +    +   +  +           +    + V  ++     
Sbjct: 291 QELSRIARIITRMRDFYRPSRGELTNANINALLRETLELVTTHLRHSHVTVHTQLAPDLP 350

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLAR 159
              +  + +  ++ LN+ + A  ++P         ++  S  +       S+   G    
Sbjct: 351 -PIVAHADQLRQVFLNIILNACDAMPGGGELTVRSELIASRPEEPMTLAVSISDTGVGI- 408

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE    + +    +      +       +  ++  R+L +         + LL 
Sbjct: 409 DPEHIPHLFEPFYTTKPHGTGLGLAISAHIITQHGGRILVDSQPGVGTTFTILLP 463


>gi|99078347|ref|YP_611605.1| histidine kinase [Ruegeria sp. TM1040]
 gi|99035485|gb|ABF62343.1| histidine kinase [Ruegeria sp. TM1040]
          Length = 887

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 70/233 (30%), Gaps = 21/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRL 55
           + +       +  L AL  L + + H++ +P+  I    ++L+    +    + +  I  
Sbjct: 637 LQQQRDAAHQAEKLSALGELLAGVAHELNNPLSIIVGYAQMLEGRLQDKVLSKRVDRIAE 696

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKID 110
           ++  +   ++          +      L DI             +    +      +   
Sbjct: 697 AADRSARIVRAFLAMARQRPTKIEPCSLNDIVLAALDVAGYGMRSSGTEILSELDDDLPL 756

Query: 111 LSRERAKILLNLFM---VAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +S +  +++         A  +L          +  S   ++N+++  ++ NG       
Sbjct: 757 VSGDADQLVQVFSNLIINAEQALAPLGQAGRLTIRSSFDPAQNQSVVEIRDNGPGIPAA- 815

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +I +    +        I   +   +   +  +L  E  +         L
Sbjct: 816 IRARIFEPFFTTKDVGKGTGIGLAFSHRIVDAHGGQLDLETTEGEGTRFFVRL 868


>gi|226225606|ref|YP_002759712.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27]
 gi|226088797|dbj|BAH37242.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27]
          Length = 876

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +       +  +VA+  L + + H+I +P+  I    +LL E  + D+  + + L    
Sbjct: 644 RQLEEQMRHTEKMVAVGELVAGVAHEINNPLTGISAFAQLLLEETLTDDQRESVALIKKE 703

Query: 60  A-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDL 111
                      L F R      G VD    LG + ++           VQ++       +
Sbjct: 704 TDRAKGVIHDLLLFARNTERAAGPVDINDALGQVVRLRAYPLRNGGVDVQLALDPSAPRV 763

Query: 112 SRERA---KILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           S +     ++LLN+   A  ++        T++ Q   +    +    G      E   +
Sbjct: 764 SGDAQKLQQVLLNIIGNAEYAMRDRPHRVLTLTTQGHGDTVSITATDTGKGM-PEEVRRR 822

Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +  +     +       +   +   +  E + D    ++ +L 
Sbjct: 823 IFEPFFTTKPNGVGTGLGLSVSYGIVRAHGGTVSVESVPDVGTTVTIVLP 872


>gi|320107191|ref|YP_004182781.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319925712|gb|ADV82787.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 985

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 68/233 (29%), Gaps = 24/233 (10%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54
                 +  L +  LL + + H++ +P+  I +  ++L +   +D  +        Q   
Sbjct: 727 EAQLTQAEKLSSIGLLAAGVAHEVNTPLAVISSYTQMLRKQTSDDPRLSMVLDKITQQTF 786

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKID 110
            +S      L F R        VD    L +   ++E      K    +           
Sbjct: 787 RASEIVNGLLNFSRKTSSEFVPVDMNAVLKETVALLEHQFRTAKVTVQADLAATLPCVDG 846

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  +++LNL + A  ++       ++   + +    + S+   G+         +I 
Sbjct: 847 SQGKLQQVVLNLMLNAKDAMADSTTPHLTVATRATDTHVLLSISDKGSGIDPAHLH-KIY 905

Query: 169 DGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +             +       +  E+  ++  +              
Sbjct: 906 DPFFTTKNAPREGQHKGTGLGLAVSYGIVQEHGGKIRVDSAVGQGTTFHLEFP 958


>gi|308175220|ref|YP_003921925.1| sensor histidine kinase [Bacillus amyloliquefaciens DSM 7]
 gi|307608084|emb|CBI44455.1| sensor histidine kinase RBAM_032040 [Bacillus amyloliquefaciens DSM
           7]
 gi|328555192|gb|AEB25684.1| sensor histidine kinase [Bacillus amyloliquefaciens TA208]
 gi|328913553|gb|AEB65149.1| Alkaline phosphatase synthesis sensor protein phoR [Bacillus
           amyloliquefaciens LL3]
          Length = 353

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 55/222 (24%), Gaps = 17/222 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----------- 58
               L     S + H+I +P+ ++     LL +  +  E                     
Sbjct: 124 EMEKLKQEFISNVSHEIQTPLTSLKGYAHLLKKPDLSYEERGRYLHIIETETERLSKISE 183

Query: 59  ---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                    +           +D  +    +    E      + +               
Sbjct: 184 NLLKLTALERQTEPIQKKPFRIDKQLRRTILTCEPEWSAKQIEFLIDLQESYVYGDEALL 243

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172
           +++ +NL   A      GG++++ + D        +  NG      +    F +    + 
Sbjct: 244 SQVWMNLIHNAVKFTGEGGRISVKITDLPEAAAIEIADNGIGMEPEQAERVFERFYKADK 303

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +A  +   +  E       +   +L 
Sbjct: 304 ARNAGGSGLGLSIAKKIAELHGGSIEVESKRGEGTLFRVILP 345


>gi|224538200|ref|ZP_03678739.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520195|gb|EEF89300.1| hypothetical protein BACCELL_03091 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 928

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 55/229 (24%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     LL E   + E  +  ++   +  
Sbjct: 701 AKEKAEEADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLVETEDQGEKREYSKMVEENNE 758

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                               +    ++               +  
Sbjct: 759 LLLQLISDILDLSKIEAGTFDFKIRDLDVNTLCGDVQRSMKLRVKPGVELLFEPTLPSCV 818

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       +++ N    A      G       Q         +   G     PE   +I
Sbjct: 819 IVSDPNRLHQVVANFVNNAIKFTTTGYIRIGYDQPDAKHLRIYVSDTGIGI-APEACEKI 877

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D  +   S +    +       +  +    +  +           +L 
Sbjct: 878 FDRFIKLNSFVQGTGLGLSISKSIIEQLGGTIGVDSELGKGSTFWFILP 926


>gi|254475691|ref|ZP_05089077.1| alkaline phosphatase synthesis sensor protein PhoR [Ruegeria sp.
           R11]
 gi|214029934|gb|EEB70769.1| alkaline phosphatase synthesis sensor protein PhoR [Ruegeria sp.
           R11]
          Length = 346

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 15/239 (6%), Positives = 62/239 (25%), Gaps = 27/239 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           +I     +  +     + + H++ +P+ A+   +E L      +    +  +++++  + 
Sbjct: 108 DITEREQASQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDAAARERFLEIMQGEAN 167

Query: 59  SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +                           ++ +       +  + +       
Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPREQLDLGAHLASTLKSLEPVAQGKEVSLALEVPQTPT 227

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLA--- 158
            ++ +  ++      +   ++  GG                        +  NG      
Sbjct: 228 LVTGDPDQLQQVFTNLVENAIKYGGNQVLVRLSLSDRDPAVRSAAVRVQVIDNGAGIDPI 287

Query: 159 RFPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P    +      +         +    V  + + ++ R+  E         + +L +
Sbjct: 288 HLPRLTERFYRVDTHRSREQGGTGLGLAIVKHIVNRHRGRMRVESSAGKGTTFTVILPR 346


>gi|315187462|gb|EFU21218.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 752

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK             L  + + H++ +P+  I    ELL   G+  E+++  R    +  
Sbjct: 353 AKEEAERADRAKSAFL--ATMSHELRTPLNGIIGMSELLMSSGLSGELVEYARTIQTAGE 410

Query: 62  IRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSW--------T 105
             L  +      +                   +  V +          + +         
Sbjct: 411 NLLALINDILDVSQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKSLRFVLEVASEVP 470

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
              +      +++L NL   A     RG  V     +       + +F ++  G      
Sbjct: 471 AVVVSDEARLSQVLFNLVGNAIKFTSRGEVVLRVWMEEAEEGRAKIVFQVRDTGIGIPRE 530

Query: 162 E---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    F +    +           +       L      R+  E  +      +  + 
Sbjct: 531 ELPRVFERFHQVDQGVTRRFQGSGLGLSIARDLVELMGGRIEVESEEGKGSCFTVRIP 588


>gi|306833966|ref|ZP_07467090.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338]
 gi|304423967|gb|EFM27109.1| sensor histidine kinase VicK [Streptococcus bovis ATCC 700338]
          Length = 450

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMIRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +          +              D  +           +   +  + I L  +    
Sbjct: 271 IDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTISGKQYEIVRDYPIKSIWLEIDPDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            ++L N+   A    P GGK+T+S++ ++ + I S+   G      +    F +    + 
Sbjct: 331 TQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 391 ARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLP 434


>gi|288905746|ref|YP_003430968.1| essential two-component sensor histidine kinase [Streptococcus
           gallolyticus UCN34]
 gi|306831844|ref|ZP_07465000.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325978779|ref|YP_004288495.1| two-component sensor histidine kinase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732472|emb|CBI14044.1| conserved essential two-component sensor histidine kinase
           [Streptococcus gallolyticus UCN34]
 gi|304426042|gb|EFM29158.1| sensor histidine kinase VicK [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|325178707|emb|CBZ48751.1| two-component sensor histidine kinase [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 450

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMIRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +          +              D  +           +   +  + I L  +    
Sbjct: 271 IDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTISGKQYEIVRDYPIKSIWLEIDPDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            ++L N+   A    P GGK+T+S++ ++ + I S+   G      +    F +    + 
Sbjct: 331 TQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 391 ARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLP 434


>gi|212639387|ref|YP_002315907.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212560867|gb|ACJ33922.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 569

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 15/225 (6%)

Query: 3   KNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRL 55
           + +   +  S  L     + ++  H+I +P+  IH  L    E L E   E   + L+  
Sbjct: 344 EELTKRMHQSEKLALMGEMAAKAAHEIRNPLAVIHGFLAFMNENLHERDREQYHIPLLLQ 403

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK-I 109
                   ++ M L    +  V     +  I Q       +   A + RV V        
Sbjct: 404 EIDRINAIVEDMLLIAKPSAPVMKEAYMETIVQDVLSLFQQTLEAKNIRVHVRLDRVPLS 463

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              ++  ++L NL   +  ++ + G       D        +  +G+          I +
Sbjct: 464 IDPKQMMQVLYNLLYNSIEAVGKDG-TICLYSDVGETYNMYVYDSGSGI-PTHIQETIFE 521

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +      +    V  +   +   +      +        L 
Sbjct: 522 PFITTKSSGTGLGLTIVKRIIENHGGTIALHDSSEQGTTFVIKLP 566


>gi|269926212|ref|YP_003322835.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789872|gb|ACZ42013.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 477

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 57/228 (25%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           K +   L +        +   H++ +P+  I  +  LL            E ++ I   +
Sbjct: 250 KQLRETLDAER---RFVADASHELRTPLTTILGNAGLLLKVPNMSPEDRQESLEQIYEEA 306

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKI 109
                 +  +                  ++         +         R+      E +
Sbjct: 307 DRMRRLVSDLLTLARADAGFRLKQEPVKVQPVVESAVREMEHRATDRQLRIDKISDVEVV 366

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQ 166
                  +++L L   A         + + V+   ++ +  +   G        P  F +
Sbjct: 367 GDKDALKQLVLILLDNAIKYTRNQDSIQVEVEKDDSQAVIRVADTGIGISQEHLPHIFER 426

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   + D   +       +  ++   +          +    L 
Sbjct: 427 FYRADTSRSSDGTGLGLSIAKWIVEQHCGSISVASEIGKGSIFEVKLP 474


>gi|254465485|ref|ZP_05078896.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
 gi|206686393|gb|EDZ46875.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacterales bacterium Y4I]
          Length = 654

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 74/230 (32%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
           + +     + S  L A+  + + + H+I +P+  I  +L+L            +E  +LI
Sbjct: 420 LERTTERLIVSEKLAAVGEITASVAHEINNPVAVIQGNLDLARTVLGRHAEPVEEEFRLI 479

Query: 54  RLSSMSAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                   + +  +                   + +     + +   +   ++    ++ 
Sbjct: 480 DDQVYRISVIVSKLLQFARPEEYSGAAGLISPAEVVADCLVLTRHQIEATGIEAEAHLAS 539

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           TG+      E  ++++NL + A  ++P GG++T++ +D+ +  + + +  G         
Sbjct: 540 TGQVRISRTELQQVIVNLILNAVQAMPGGGRLTLTAEDTPDGVLLAAEDTGTGIPADLLN 599

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       L      R+  +            L 
Sbjct: 600 RIFDPFFTTKQAQGTGLGLSISHQLVSRAGGRITVQSEPGRGTRFEIFLP 649


>gi|229541514|ref|ZP_04430574.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325934|gb|EEN91609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 595

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 66/226 (29%), Gaps = 23/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIR--- 63
             + +   + + H++ +P+ ++    E L +  +       E +++I   S         
Sbjct: 363 EQIRSEFVANVSHELKTPVTSVKGFAETLLDGAMYDEATLREFLKIIYDESDRLHRLISD 422

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      + L       VD +       +   +   ++  +               
Sbjct: 423 ILDLSRIEQHRILLKMEQLNVVDVVAETVQTMRKRIEKKQLELVLPQKRHVMMEADKDRL 482

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +ILLNL   A A  P  G++ IS+ + +NE    +   G      +   +I +      
Sbjct: 483 RQILLNLVTNAIAYTPDKGRIEISLIERENELDLIVSDTGIGISEKDLP-RIFERFYRVD 541

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +    V  L      ++  E  +         L +
Sbjct: 542 KARSRQSGGTGLGLAIVKHLVESYHGKIRVESEEGKGSTFIVTLPR 587


>gi|313673765|ref|YP_004051876.1| histidine kinase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940521|gb|ADR19713.1| histidine kinase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 372

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 72/224 (32%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAI 61
           +       ++ L+  + + I HDI +P+G+I     LL      + E   L+        
Sbjct: 148 EKEQRRNENLKLMGEMAAGIAHDIRNPLGSIEIFATLLRRDLEGDREKENLLNSIIKGVK 207

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------WTGEKIDL 111
                +     +T  +        I  +++D I   K +                +    
Sbjct: 208 TINNTISNILLFTKDIRLNKKNVYIADIVDDVILFMKHLMNDKKIVFQNRIGDNDQIYCD 267

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                ++++N+   A  ++P+GGK+TI  +++   +   ++ NG          +I    
Sbjct: 268 IELIKQVVMNIIHNAIDAVPQGGKITIYSEETSTNSSIFIEDNGPGISPNFI-DKIFLPF 326

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +    V  +   +   + P        +    L K
Sbjct: 327 HSKKAKGTGLGLSIVYKIIKAHNGNIYPISKPGQ-TIFKITLPK 369


>gi|307706667|ref|ZP_07643473.1| two-component sensor histidine kinase [Streptococcus mitis SK321]
 gi|307617911|gb|EFN97072.1| two-component sensor histidine kinase [Streptococcus mitis SK321]
          Length = 449

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVSWTGEKIDLSRERAK 117
           +    +     LI        I +     +           R     +      + +  +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMRGSDEEKKYELVRDYPITSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T++++ + ++ I S+   G      +   +I D        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++   +  + I       + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHNGFIWAKSIYGKGSTFTIVLP 432


>gi|307708757|ref|ZP_07645219.1| sensor protein YycG [Streptococcus mitis NCTC 12261]
 gi|307615123|gb|EFN94334.1| sensor protein YycG [Streptococcus mitis NCTC 12261]
          Length = 452

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVSWTGEKIDLSRERAK 117
           +    +     LI        I +     +           R     +      + +  +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMRGSDEEKKYELVRDYPITSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T++++ + ++ I S+   G      +   +I D        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++   +  + I       + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHNGFIWAKSIYGKGSTFTIVLP 432


>gi|224371240|ref|YP_002605404.1| sensory box hisitidine kinase [Desulfobacterium autotrophicum HRM2]
 gi|223693957|gb|ACN17240.1| sensory box hisitidine kinase [Desulfobacterium autotrophicum HRM2]
          Length = 659

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 73/219 (33%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLE--------LLDEVGIEDEVMQLIRLSSMS 59
            S  L A+  L + + H+I +P+ +I             + ++    D ++  +   + +
Sbjct: 434 RSRRLAAVGKLAAGVAHEIRNPLSSIKGFATYFRERYKGVAEDRETADIMIHEVERLNRA 493

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
               L+F +        VD    +    +++E+ +A      ++       E        
Sbjct: 494 ITQLLEFAKPVPVVARKVDVKDLVAHSLKLVENDLAARGIGVEKTIPRDQKEVTIDPDRL 553

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +ILLNL++ A  ++  GG + + V   K      +   G+     +   +I D    + 
Sbjct: 554 NQILLNLYLNAIQAMDNGGTLGVKVTTEKGCLFVEVSDTGSGIAVSD-MEKIFDPYYTTR 612

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V          +  E  + H       + 
Sbjct: 613 ARGTGLGLAMVHRNLETMGADIRVESREGHGTTFFLKIP 651


>gi|253701131|ref|YP_003022320.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775981|gb|ACT18562.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 571

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 66/247 (26%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + K       +  + A+  L + I HD  + + +I    ++    + E  +    M+ + 
Sbjct: 181 LRKTEKELRQAQKMEAVGTLAAGIAHDFNNILTSILGFTDMVLHKIPEGEMGRREMEQVF 240

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +S+  A   ++ +             + +  I +     +       V +  E      +
Sbjct: 241 VSAQRAADLVRQILSFSRRNDQERQPVHVSGIIEDTCKLLRSSLPATVEFVTEFFVSEDD 300

Query: 115 R---------AKILLNLFMVAHASLPRGGKVTISVQD----------------SKNENIF 149
                      ++L+NL   A  ++   G                        S++    
Sbjct: 301 DKVLADPIQLHQVLMNLCTNAAHAMQPDGGTLTITLTAAEAGSPGLTSLPVLTSRDYIRV 360

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           ++   G          +I D    +    +   +    V  +   +   +          
Sbjct: 361 AVSDTGRGIEPL-VLERIFDPYFTTKPAGEGTGLGLAVVQGIVKNHGGAITVHSEPGKGT 419

Query: 208 VLSALLE 214
                L 
Sbjct: 420 CFEVFLP 426


>gi|322383982|ref|ZP_08057712.1| sporulation-specific ATP-dependent protein histidine kinase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151459|gb|EFX44646.1| sporulation-specific ATP-dependent protein histidine kinase-like
           protein [Paenibacillus larvae subsp. larvae B-3650]
          Length = 441

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 68/222 (30%), Gaps = 19/222 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIRLK 65
           +  L  L  + + I H+I +P+ +I   ++LL     +       +        A   + 
Sbjct: 207 NDKLAMLGKIAAAIAHEIRNPLTSIRGFIQLLQPELSKLGKEDYGKIIIDEIDRANDIIY 266

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKILL 120
               +   T  V   I +  + + +             +++++     + +  +  ++  
Sbjct: 267 EFLNSSKPTKPVKQKILISSLLKEVVMLFESEALLRGCQIKITEADSDLWVRVDTKQLKQ 326

Query: 121 NLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +   ++         + G + I  +  + +    ++ NG          ++ D   
Sbjct: 327 VFSNLVKNAVEILTASGEGQQGMIEIKAKKKEKQAFIQVRDNGPGMDEHTLS-RLFDPFF 385

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +   +       +   +   ++ E       V +  L 
Sbjct: 386 TTKEEGTGLGLSVSYNIIKNHGGTIVAESEKGRGTVFNIELP 427


>gi|259419178|ref|ZP_05743095.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259345400|gb|EEW57254.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 825

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L+       L + + H++ +P+  I  SL++L+++G   +  + ++   +S 
Sbjct: 336 LRRARDDALAGEQAKDRLLTVMSHEMRTPLTGILGSLDVLEDLGPTADQQRYMQAMRVSG 395

Query: 61  IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
            + L  +                     D    +  I +  +     +         +  
Sbjct: 396 ELLLHHVNDVLQLSRLEAGADPDPPHPFDLDELVSGIGESQQAIARRNNNELTVFCSLGG 455

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +       R   ++LLNL   A      G      ++   +   FS+   G      +  
Sbjct: 456 SSGVEGRCRYVQQVLLNLIGNALKFTHDGAVSVDVMRTEGDLVEFSVADTGKGIAAEDLD 515

Query: 165 TQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               D      + +   +   +       L       +  E   D   + +  + 
Sbjct: 516 RIFDDFTMLDPSYKRGSEGTGLGLAISRRLVRLMGGEITCESEPDEGSLFTFTIP 570


>gi|55821168|ref|YP_139610.1| sensor histidine kinase [Streptococcus thermophilus LMG 18311]
 gi|55737153|gb|AAV60795.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK
           Spy) [Streptococcus thermophilus LMG 18311]
          Length = 446

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + +E+        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALNEEIAPNFIKVSLDETNRMMRMITDLLALSR 269

Query: 69  LAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +    T     +                 +  E        +   +    I +  +    
Sbjct: 270 IDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+S++ +  + I S+   G      +    F +    + 
Sbjct: 330 TQVIDNILNNAIKYSPDGGKITVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433


>gi|329724647|gb|EGG61153.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU144]
          Length = 565

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    D  + +I   S    
Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +  I + D  Q       +  + ++         
Sbjct: 396 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVIIEAH 455

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             + A+++ NL   A        KV + V  + N+    ++  G      +    F +  
Sbjct: 456 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 515

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+  +       +   L
Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVL 561


>gi|225863918|ref|YP_002749296.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225785678|gb|ACO25895.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 353

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E I+      S  + 
Sbjct: 300 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESIEGQGTEFSVRIP 352


>gi|170690557|ref|ZP_02881724.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
 gi|170144992|gb|EDT13153.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia graminis C4D1M]
          Length = 585

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 71/264 (26%), Gaps = 50/264 (18%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISP------------------IGAIHNS---- 36
           +A+     L S  L ++  L + + H+I +P                  + A+       
Sbjct: 312 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYMADLLTALAAYERSE 371

Query: 37  LELLDEVGIEDEVMQLIRLSS-----------------MSAIIRLKFMRLAFGYTGSVDS 79
            EL+ E       ++                             ++ ++       +   
Sbjct: 372 AELIAESRAALIELKREIDIDYLRSDIPTLLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 431

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEK------IDLSRERAKILLNLFMVAHASLPRG 133
              L        + +  + + +     E         +  +  ++ +NL M A  S+   
Sbjct: 432 WANLESNLDTTINIVWNELKYKAELKREFGAIPELECIPSQLNQVFMNLLMNAAQSIEGH 491

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191
           G + +     +      ++ +G     PE   +I D    +        +       +  
Sbjct: 492 GHIVVRTGHDETSVWIEVEDSGQGI-KPEHRDRIFDPFFTTKPVGTGTGLGLSISYGIVR 550

Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215
           +   R+       H      +L K
Sbjct: 551 KQGGRIEVRSEVGHGSTFRVVLPK 574


>gi|251799903|ref|YP_003014634.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547529|gb|ACT04548.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 753

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 71/225 (31%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            +       S  L  V  L + + H++ +P+  +   ++L+  +  ++   + ++     
Sbjct: 528 KRTEDILRRSEKLSVVGQLAAGVAHEVRNPLTTLRGFVQLMQKDSRLDKSYLNIMLSELD 587

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------ID 110
              + +    +             L  I   I   +  +  +                  
Sbjct: 588 RINLIVSEFLVFAKPQADRYQEADLYAIMNDIIVLLDSEANIHNVQMITCLEPGVPSLRC 647

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            S +  ++L+N+      ++P GG++T+   ++S+   +  +K  G      +   ++ +
Sbjct: 648 ESNQLKQVLVNVMKNGMEAMPDGGELTLELARESEQNILIRIKDQGVGIPEEDL-ARLGE 706

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + + +       +   +K  +           +   + 
Sbjct: 707 PFFTRKAEGNGLGLMISQQIIQHHKGTIQYSSKPGEGTCVEIRIP 751


>gi|298481494|ref|ZP_06999686.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272358|gb|EFI13927.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 631

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 61/231 (26%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +++ +     +  L +   + + H+I +P+ AI     +L   ++     E   +I  ++
Sbjct: 398 LSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTEDPVEMREYADIIETNT 457

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
              +  +                Y  S+D    + +IEQ +   +               
Sbjct: 458 DLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTERLPG 517

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N    A      G           +   F +   G      E+  
Sbjct: 518 CLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCGM-SNEQCE 576

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +        I    +       +      ++  +  +         L 
Sbjct: 577 HVFERFVKYNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLP 627


>gi|237715649|ref|ZP_04546130.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408658|ref|ZP_06085204.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294646689|ref|ZP_06724314.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807119|ref|ZP_06765937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444358|gb|EEO50149.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353523|gb|EEZ02617.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637977|gb|EFF56370.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294445685|gb|EFG14334.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 631

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 61/231 (26%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +++ +     +  L +   + + H+I +P+ AI     +L   ++     E   +I  ++
Sbjct: 398 LSEAVEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHTEDPVEMREYADIIETNT 457

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
              +  +                Y  S+D    + +IEQ +   +               
Sbjct: 458 DLLLQLINDILDLSKIEAGTFDFYPSSIDVNQTMEEIEQSMRLRLKNSDVTLAFTERLPG 517

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N    A      G           +   F +   G      E+  
Sbjct: 518 CLFYIDKNRLIQLLANFVNNAIKFTQTGTICMGYRMTDTDTIYFYVSDTGCGM-SNEQCE 576

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +        I    +       +      ++  +  +         L 
Sbjct: 577 HVFERFVKYNPFIQGTGLGLSICRTIVERLGGKIGVDSEEGKGSTFWFTLP 627


>gi|322372854|ref|ZP_08047390.1| sensory box histidine kinase VicK [Streptococcus sp. C150]
 gi|321277896|gb|EFX54965.1| sensory box histidine kinase VicK [Streptococcus sp. C150]
          Length = 446

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + +E+        +             L    
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALNEEIAPNFIKVSLDETNRMMRMISDLLALSH 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115
           +    T     +         I +              D  +   +    I +  +    
Sbjct: 270 IDNKSTHLDVEMTNFTAFMTYILNRFDQIKSQENNTGKDYEIIRDYPVNSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+S++ +  + I S+   G      +    F +    + 
Sbjct: 330 TQVVDNILNNAIKYSPDGGKITVSMKTTDAQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 390 ARSRAQGGTGLGLSIAKEIIKQHNGFIWAKSEYGKGSTFTIVLP 433


>gi|295704118|ref|YP_003597193.1| sporulation kinase KinC [Bacillus megaterium DSM 319]
 gi|294801777|gb|ADF38843.1| sporulation kinase KinC [Bacillus megaterium DSM 319]
          Length = 427

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55
           +A+ +      + +V  L + I H+I +P+ +I   ++L+ E         + ++  +  
Sbjct: 193 LAEALLIKKEKLSVVGELAAGIAHEIRNPLTSIKGFVQLMKETDRSAIGYANIMLDELER 252

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDL 111
            +      L   +    +         +  +  +      +     +             
Sbjct: 253 INGIVSEMLLLSKPESEHFRVFSLTEAVKYVMSLTSHEALLKNIDFLYDEQTNSASVYGN 312

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDG 170
                ++LLN+F  A  ++ R G + I+++    N     ++  G      ++   I + 
Sbjct: 313 KNHLIQVLLNVFKNAIEAMDRPGNIYITIKTAQDNHIFIEVRDEGVGI-SKDRLEHIGEP 371

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       + H++   L  E   +   ++   L 
Sbjct: 372 FFTLKEKGMGLGLTISSKIIHDHHGTLQIESEQNKGTIVKIRLP 415


>gi|294498797|ref|YP_003562497.1| sporulation kinase KinC [Bacillus megaterium QM B1551]
 gi|294348734|gb|ADE69063.1| sporulation kinase KinC [Bacillus megaterium QM B1551]
          Length = 430

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 72/224 (32%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55
           +A+ +      + +V  L + I H+I +P+ +I   ++L+ E         + ++  +  
Sbjct: 193 LAEALLIKKEKLSVVGELAAGIAHEIRNPLTSIKGFVQLMKETDRSAIGYANIMLDELER 252

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDL 111
            +      L   +    +         +  +  +      +     +             
Sbjct: 253 INGIVSEMLLLSKPESEHFRVFSLTEAVKYVMSLTSHEALLKNIDFLYDEQTNNASVYGN 312

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDG 170
                ++LLN+F  A  ++ R G + I+++    N     ++  G      ++   I + 
Sbjct: 313 KNHLIQVLLNVFKNAIEAMDRPGNIYITIKTAQDNHIFIEVRDEGVGI-SKDRLEHIGEP 371

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       + H++   L  E   +   ++   L 
Sbjct: 372 FFTLKEKGMGLGLTISSKIIHDHHGTLQIESEQNKGTIVKIRLP 415


>gi|159899976|ref|YP_001546223.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893015|gb|ABX06095.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 544

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 75/228 (32%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIR 54
           + +     + +  L  +  + + + H+I +P+  I + LEL+ +       +    Q + 
Sbjct: 299 LRETQGRLVEAEKLSGMGRMAASLAHEINNPLAIIRSGLELVAQQHTPGTALGDLVQGLD 358

Query: 55  LSSMSAIIRLKFMRLAFGYTG---SVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGE 107
                    L  +   +         D    +  +  + +  +                 
Sbjct: 359 EEVARIARLLYTLVNFYQPNNDGVPPDLNHLIISLMHITKPQLDKANVKLYQELATDLPA 418

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               S    ++L+NL   A  ++P GGK+TI     K +   +++ +G     PE   +I
Sbjct: 419 PNISSDACKQVLINLVRNAIDAMPDGGKLTIRTAHQKGQIFVNVEDSGIGI-PPEHRERI 477

Query: 168 VDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  +    +    V  +  +    +  E I D     +  + 
Sbjct: 478 FEPFFSTKGVTGTGLGLSVVYGILQQVGGAISVESIVDKGSNFTLRIP 525


>gi|108759384|ref|YP_633922.1| pilin regulatory protein PilS [Myxococcus xanthus DK 1622]
 gi|950652|gb|AAB40880.1| sensor protein [Myxococcus xanthus DK 1622]
 gi|108463264|gb|ABF88449.1| pilin regulatory protein PilS [Myxococcus xanthus DK 1622]
          Length = 525

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 71/226 (31%), Gaps = 13/226 (5%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       +  L +L  L +++ H++ +P+ ++  S +LL +   +D   +L  +   
Sbjct: 300 LRRMEDDLKRADRLASLGALSAQLAHELRNPLASMRGSAQLLAQDARDDVAQKLTNILMR 359

Query: 59  SAIIRLKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +    + +     +                +    D+ +V      V   V        
Sbjct: 360 ESDRLARLVEEFLRFARPPVPSLRRVPLASLVTETMDMLRVDPLARDVRVEVTAPEPLPV 419

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++L+NL      +    G+V +++  S+NE    +  +G  +   E    + 
Sbjct: 420 SVDPDQLRQVLINLVRNGFLAAGPRGEVKVALTRSENEARIRIWDSG-GSITEEMMGHLF 478

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +   +   +      D        L 
Sbjct: 479 EPFFTTRDGGTGLGLSTAHSIIRAHGGSIRVRSNRDEGTEFVVGLP 524


>gi|332703497|ref|ZP_08423585.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553646|gb|EGJ50690.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 586

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 79/227 (34%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
           + +++     +  L A+  L + + H+I +P+ A+    +  L ++       +  R   
Sbjct: 362 LERSLA---EAEKLAAVGRLAAGVAHEIRNPLSALRGFAQFFLKKLQGVQPDEEYARTMV 418

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDL 111
             A    K +                 D   + ED              ++ +      +
Sbjct: 419 READRLNKVITDMLFLARPQSLTPQDVDTTTLFEDLRRLLEGEAAKAGAELRFEARTPSV 478

Query: 112 SRERA---KILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             +     ++LLNL M + A+LP  G +V ++ + + N+ + S+  NG     P+     
Sbjct: 479 HADSDGLKQVLLNLIMNSLAALPETGGQVIVTAEPAGNDMLLSVADNGRG-FSPDAREHA 537

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++    +      +       L  ++  RL  E  +    V+   L 
Sbjct: 538 LEPFFTTRAQGTGLGLAIAHKLVQDHGGRLEIESEEGRGAVVRVFLP 584


>gi|320547234|ref|ZP_08041527.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812]
 gi|320448122|gb|EFW88872.1| sensor histidine kinase VicK [Streptococcus equinus ATCC 9812]
          Length = 450

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 31/240 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +             L  S I H++ +P+ ++ + LE LDE  +++++        +  
Sbjct: 200 MEQEKEDRERR-----LFVSNISHELRTPLTSVKSYLEALDEGALKEDIAPSFIKISLDE 254

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQV 102
                      L   R+          +              D  +           +  
Sbjct: 255 TNRMIRMISDLLNLSRIDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTVAGKQYEIVR 314

Query: 103 SWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +  + I L  +     ++L N+   A    P GGK+T+S++ ++ + I S+   G    
Sbjct: 315 DYPIKSIWLEIDPDKMTQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIP 374

Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +           +       +  ++K  +  +         + +L 
Sbjct: 375 KKDLPLIFDRFYRVDKARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLP 434


>gi|328951187|ref|YP_004368522.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451511|gb|AEB12412.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 477

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           + + +   LS ++          +   H++ +PI AI   +  L         + E +++
Sbjct: 236 LVRALNRMLSRLEAAFRSQTRFLADASHELRTPITAILGHVGYLLRRTSLTEAQRESLEI 295

Query: 53  IRLSSMSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           IR  +      +  +                V+    L ++ +           V+   T
Sbjct: 296 IRREAERMTKLVTDLLDLAGSEGGWRLEIRPVNLASLLNELAEEYRPAFNGRLVVEAPST 355

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
                      ++  NL   A  +  R   +         + +  +  +G          
Sbjct: 356 VWVAGDDSRLHQVFANLVNNAIKAGARTITLRARSL--GEKVVVQVVDDGPGIPPEHLPY 413

Query: 164 -FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +    +           +    V  +   +   +  E       V S  L +
Sbjct: 414 LFERFYRVDKARDRAAGGSGLGLAIVKAIVEAHGGEVWVESELGKGAVFSVSLRR 468


>gi|320160199|ref|YP_004173423.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994052|dbj|BAJ62823.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 467

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 22/229 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           M++ I        L   + + I HD+ +P+  I   +E + +       + + LI     
Sbjct: 235 MSQQIARANQ---LRRQMTADIAHDLRTPLTVIAGYIESMRDGVLQPTPQRLDLIYQEIE 291

Query: 59  SAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +R+               +    +                  ++V  +    
Sbjct: 292 RLQKMVNDLRMLSQADAGELNLHPQPTQPLALLKRAAHLFQHHAEQAGINLKVEASETLP 351

Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++L NL   A      GG++T+  +    +    +   G      E    
Sbjct: 352 AILVDEDRMMQVLDNLISNALRYTSAGGEITLRAKQDGKQVRLQVADTGTGIPSEELPRI 411

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           F +    +     +     +    V  L      ++  E        ++
Sbjct: 412 FERFHRVDPSRHSESGGSGLGLAIVRALVEAQGGKVSAESELGKGTTIT 460


>gi|307709234|ref|ZP_07645693.1| two-component sensor histidine kinase [Streptococcus mitis SK564]
 gi|307620180|gb|EFN99297.1| two-component sensor histidine kinase [Streptococcus mitis SK564]
          Length = 449

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +Q+          +   +    + +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDQIRGQDEDKKYELVRDYPITSVWIEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T++++ + ++ I S+   G      +   +I D        
Sbjct: 331 VIDNILNNAIKYSPDGGKITVTMKTTDDQMILSISDQGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|298675081|ref|YP_003726831.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288069|gb|ADI74035.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 747

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 22/245 (8%), Positives = 54/245 (22%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL---DEVGIEDEV 49
           M K    NL    + A         + + + H++ +P+  I    ++L       + D  
Sbjct: 487 MQKQTEDNLVYAKMEAYAANQAKSDMIANVSHELRTPLTTIIGFSDVLLKGKAGDLNDSQ 546

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVD 97
            + +             +      +      + +                 V        
Sbjct: 547 EKYLSKIHDRGQQLHNIINEMLDLSKIDSGELDVSCEYIAVHELFENLKSNVYPIASKKG 606

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKIN 154
             ++         +  +  K+   L+     +      G        D  N   FS+  +
Sbjct: 607 LTIETKINQRVDYIYADELKLKHILYNLLYNSVKFTDDGSITIKLDLDENNNYKFSVVDS 666

Query: 155 GNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      +                       +    V  L   +   +  E         
Sbjct: 667 GIGIPNEKLNQIFEPFKQLDTGTSRKYSGTGLGLTLVKRLVELHGGNIWVESEVGTGSKF 726

Query: 210 SALLE 214
           +  + 
Sbjct: 727 TFTIP 731


>gi|217968805|ref|YP_002354039.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
 gi|217506132|gb|ACK53143.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
          Length = 619

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 66/219 (30%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSA----IIR 63
            LL + I H+I +P+G++   LE ++             D+ ++ +              
Sbjct: 399 GLLAAGIAHEIHNPLGSLRLGLEAMERRLRGRPERDDRIDDYLRTMDEEIDRCLQVTQRL 458

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKIDLSRERAKIL 119
           L   R        VD    L D   ++       +   +               +   ++
Sbjct: 459 LMLSRPPQARVQPVDVNPVLADTSCLLAYDAENRQIEHILEADKAAPRVWADDADLRMLM 518

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS- 178
           +NL   AH ++P GG+VT+      +E +  ++  G      +    + +       D  
Sbjct: 519 INLVQNAHHAMPSGGQVTLRSHIIGDEVLIEVEDTGVGIPEDDVP-HLFEPFFSRRADGE 577

Query: 179 --HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +       +      R+  E            L +
Sbjct: 578 PGTGLGLSICRSIVDHYGGRIAVESRPGEGARFRVSLPR 616


>gi|332971397|gb|EGK10355.1| sensor histidine kinase VicK [Desmospora sp. 8437]
          Length = 595

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 26/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
             + + H++ +P+  I + LE L      +E  +    M++ R  +      +  +    
Sbjct: 366 FVANVSHELRTPLTTIKSYLEALDEGGAMEEPELASRFMRVTRQEAERMTRLIHDLLQLS 425

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKIL 119
                  R           L+   D          +D ++ +     ++   R++  ++L
Sbjct: 426 RLDAEKVRFRKAPLPLESVLVDAADRFAFQCRQKEIDFQLSLEEDLPRVYADRDQIDQVL 485

Query: 120 LNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
            NL   A    P        + + S      ++   G      +   +I +         
Sbjct: 486 DNLLSNAVKYTPEGKKISLTARKCSDGYVEVAVADRGIGIPKKDL-ERIFERFYRVDKAR 544

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++    +       +   +   +  E        +   L 
Sbjct: 545 SRSLGGTGLGLSIAREIVRAHGGSIQLESNYGKGTTVRFTLP 586


>gi|153005239|ref|YP_001379564.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028812|gb|ABS26580.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 418

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 64/222 (28%), Gaps = 9/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
            ++     +  D +A + + + H+I +P+G I  ++EL+ E         + E ++ +  
Sbjct: 191 RRSDAERAARGDALARMGAMVAHEIRNPLGVIRGAVELVRERSAGALVPRDREALEDVLG 250

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLSRE 114
                                  + +    I +     +A     V V      + +  +
Sbjct: 251 EVERLRRLTDDFLDLAREPSIAPAEVDAAAIAEEAARALARSHPRVDVRLALPALPVHAD 310

Query: 115 RAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            A++   L  +   +   G   V I         +  ++ +G     P    ++ +    
Sbjct: 311 PARLRQVLSNLLQNAAEAGAGCVEIRGAARDGNVLLEVRDDGRGI-DPAVRARLFEPFAT 369

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              D   +       +   +   L               L +
Sbjct: 370 GRKDGAGLGLAIARRIVERHGGELRLVARPGPGAAFEVRLPR 411


>gi|118577251|ref|YP_899491.1| integral membrane sensor signal transduction histidine kinase
           [Pelobacter propionicus DSM 2379]
 gi|118504756|gb|ABL01238.1| integral membrane sensor signal transduction histidine kinase
           [Pelobacter propionicus DSM 2379]
          Length = 372

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAI 61
                 S  L  L  + + + H+I +P+G+I  + E+L +    E+   + I +      
Sbjct: 139 EEQLRRSEKLSTLGEMAAVLAHEIRNPLGSIRGTAEILKDDYKPENPKYEFIEIQIRETE 198

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRER 115
              + +           + +    +   +E           ++++ +        ++ + 
Sbjct: 199 RLNRVVEDFLHMARPQPTDMQSCQVLDELEMISTLLLSGARERQITLELKSPPFPVTIQA 258

Query: 116 -----AKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQIVD 169
                 +  LN+ + A  + P GG+V IS     +          G          ++ +
Sbjct: 259 DGDKLRQAFLNIIINALQATPIGGRVLISTTVHASTTCEIQFHDTGPGMDAA-TMERMFE 317

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   +   L+ E        +   L 
Sbjct: 318 PFFTTKPGGTGLGLVITKKIIETHGGTLMVESEVGKGTTVIVKLP 362


>gi|297568387|ref|YP_003689731.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924302|gb|ADH85112.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 619

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           +     L S  L     + + + H+I +P+  I  S+E+L         +  I   ++  
Sbjct: 374 QTEEALLRSRQLAVVGQMAAGLAHEIKNPLAGIKVSMEVLSNELDISQQDKEIFHRIVSE 433

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRV 100
           ++         L + R        VD    L    +            V        +R 
Sbjct: 434 VQRIENLLRNLLNYARPPKPEFAPVDLNAQLESCLKNSEMLLKAPEHKVNGRRRVRFERH 493

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLAR 159
                      + +  +I LNL + A  ++         S      + +  +  NG    
Sbjct: 494 LADGLPLIRADASQVQQIFLNLLLNAIEAISDEGVVAVTSKTSEDGKVVVEVSDNGKGM- 552

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I      +      +       L   +   +                 
Sbjct: 553 TAETCARIFQPFYSNKHRGSGLGLAICKRLVELHGGEIQVVSSPGEGSTFIVAFP 607


>gi|229918112|ref|YP_002886758.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469541|gb|ACQ71313.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 463

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 61/234 (26%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLS 56
           MA+++              + + H++ +P+  I    E+L +  ++++       +I   
Sbjct: 224 MAESLGLVEEQRK---EFLANVSHELRTPLSYIRGYTEMLQDETLDEKTRAQYYDIIENE 280

Query: 57  SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +      +  +            +          L  +    + I     V     + + 
Sbjct: 281 TNRLQRLVTDLLDLAQLERDSYPMTKEPVVYSQVLEDVLYRLEPIARAKGVTIESDLDFD 340

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164
              +       +++ NL   A      G  + +         I  ++  G      +   
Sbjct: 341 LIILGDHDRLEQVIGNLLDNALRYTDAGKTIHVKTFAETEYAITEIRDEGRGIPKEDLDK 400

Query: 165 --TQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    + +         +       +   ++  L           ++  L 
Sbjct: 401 LTERFYRVNKSRTRKDGGTGLGLAIAKHIIERHEGSLHFSSEVGQGTTVTVGLP 454


>gi|55823081|ref|YP_141522.1| sensor histidine kinase [Streptococcus thermophilus CNRZ1066]
 gi|13324643|gb|AAK18825.1|AF327739_2 Hpk2 [Streptococcus thermophilus]
 gi|55739066|gb|AAV62707.1| sensor histidine kinase (homolog to HK02/MicB Spn & HK02 Sth & VicK
           Spy) [Streptococcus thermophilus CNRZ1066]
          Length = 446

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + +E+        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALNEEIAPNFIKVSLDETNRMMRMISDLLALSR 269

Query: 69  LAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +    T     +                 +  E        +   +    I +  +    
Sbjct: 270 IDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+S++ +  + I S+   G      +    F +    + 
Sbjct: 330 TQVIDNILNNAIKYSPDGGKITVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433


>gi|116627885|ref|YP_820504.1| sensor histidine kinase [Streptococcus thermophilus LMD-9]
 gi|116101162|gb|ABJ66308.1| Signal transduction histidine kinase [Streptococcus thermophilus
           LMD-9]
 gi|312278466|gb|ADQ63123.1| Sensor protein [Streptococcus thermophilus ND03]
          Length = 446

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + +E+        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALNEEIAPNFIKVSLDETNRMMRMISDLLALSR 269

Query: 69  LAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +    T     +                 +  E        +   +    I +  +    
Sbjct: 270 IDNKSTQLNVEMTNFTAFMTYILNRFGQIKSQETNPGKSYEIIRDYPVNSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+S++ +  + I S+   G      +    F +    + 
Sbjct: 330 TQVIDNILNNAIKYSPDGGKITVSMKTTDTQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHNGFIWAKSEYGKGSTFTIVLP 433


>gi|254388464|ref|ZP_05003699.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197702186|gb|EDY47998.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 363

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 57/215 (26%), Gaps = 19/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70
           L   I H++ +P+  +   +E L +       E++  +    M     +  ++       
Sbjct: 136 LTGDIAHELRTPLANLRGYVEALQDGYVEPTPELLDSLHEEVMLQQRIVDDLQDLALAEA 195

Query: 71  ---FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILLNLF 123
                +   VD    L                   +                 +++ NL 
Sbjct: 196 GALTYHRVDVDLRELLETCRTAHHARAEAATVTLTTAPPATPVLVHADPDRLRQVVGNLL 255

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST--IDS 178
             A  + P GG VT+++       I  +   G        P  F +    +         
Sbjct: 256 TNAIRATPPGGTVTLALVPHGELAIIHVHDTGTGISEDALPHLFDRFWRADAARGRQTGG 315

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    V  +  ++   +  E         +  L
Sbjct: 316 SGLGLAIVRQIVRDHGGTVGVESTVGVGTTFTVTL 350


>gi|168701206|ref|ZP_02733483.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 590

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 72/230 (31%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
            + +   L  +  L A+  L + + HD  + +  I  S  LLD           +     
Sbjct: 234 RRRLEEQLRNAAKLEAVGRLAAGVAHDFNNLLTVIGGSAALLDGPAGRGPNAARLVGEVR 293

Query: 57  ------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R        +D      D+  ++   +       V    E + 
Sbjct: 294 FAAERGQWLVRQLLTFARPQAAGREPLDLGRVASDLAPILARVVGPAIETDVDTPAEPVF 353

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    + LLNL   A  ++P GG++ + V+   +    ++   G+    PE   +I
Sbjct: 354 VLADRGELEQALLNLATNARDAMPGGGRLALRVRAGADWVRVAVTDTGSGM-PPEVRERI 412

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +        +    V  +A     R+  E            L +
Sbjct: 413 FEPFFTTKGPDVGTGLGLTTVKQVAERCGGRIAVESAPGRGTTFDIDLPR 462


>gi|301299923|ref|ZP_07206154.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852468|gb|EFK80121.1| PAS domain S-box protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 627

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 64/230 (27%), Gaps = 32/230 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +P+ ++ + +E L++          E +++ +  +   I  +  +    
Sbjct: 385 QFVSNVSHELRTPLTSMRSYIEALNDGAWRDEKVAPEFLKVTQDETDRMIRMINDLLSLS 444

Query: 72  GY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------------TGEKI 109
                        V+    +  I    +  +  DK                         
Sbjct: 445 RMDSGTVKLDLELVNINGLVNYILDRFDMMLKKDKIDTRDIKTKNYTIKRNFTKRDLWVE 504

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             + +  +++ N+   A    P GG +T  + ++ N  I S+   G      +       
Sbjct: 505 LDTDKFIQVVDNIMNNAIKYSPDGGVITCRLLETHNNVILSISDQGLGIPKKDLGHVFDR 564

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +   +  R+  + ++         L 
Sbjct: 565 FFRVDKARSRAQGGTGLGLAISKEVIELHHGRIWVDSVEGKGSTFYISLP 614


>gi|37523244|ref|NP_926621.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214247|dbj|BAC91616.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 518

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 60/205 (29%), Gaps = 12/205 (5%)

Query: 22  ICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGY 73
           + H++ +P+  I   LEL+ D+     E M ++                  +  R    +
Sbjct: 304 VSHELRTPLTIIRGHLELIGDDPHERAETMHIVHDELGRMHRFVESLLLLDRLERHDGLH 363

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPR 132
              ++      +              +  + +G ++   R+   + +LNL   A      
Sbjct: 364 LEPLEVDALTRECFAKARGLGRRQWHLPSAASGCRVHADRQCLTQAVLNLAHNAVKFTTH 423

Query: 133 GGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             ++ I            +  +G           F     G+     + + +    V  +
Sbjct: 424 QDRIAIGSSLVDGRVHLWVSDSGPGVPLEAQGRIFECFERGSCHRQTEGNGLGLAIVRSI 483

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
           A  +   +  +    H    + +L 
Sbjct: 484 ALAHGGEVRLQSTPGHGATFTLVLP 508


>gi|262198725|ref|YP_003269934.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Haliangium ochraceum DSM 14365]
 gi|262082072|gb|ACY18041.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Haliangium ochraceum DSM 14365]
          Length = 752

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 29/233 (12%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAII 62
               L A+  L + + H+I +P+GAI  + +LL     +      E ++ +++       
Sbjct: 478 ERDRLAAIGELSAGLAHEIRNPLGAIKGAAQLLVGPDGEPAPPSAESVEFVQIIIEEVDR 537

Query: 63  RLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               +                   +     +    Q++      +  ++V        +S
Sbjct: 538 LNNVVSQFLDYARATGSDTHKHRPISMNEVIDKTVQILRRDAPDNVAIRVHVDELLPPVS 597

Query: 113 RERA---KILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFP 161
            + A   ++ LNL   A  ++            +   S     +      + +G      
Sbjct: 598 GDAATLLQVFLNLGQNAIQAMAESGGVLDILTTRRRRSRLGYGSFAEARFRDSGVGI-AS 656

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++      +      +       +  E+   +      +     S  L 
Sbjct: 657 DVVDKLFIPFFTTREKGTGLGLPISERIVSEHGGTIEVRANPEGGSTFSVFLP 709


>gi|148993836|ref|ZP_01823238.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP9-BS68]
 gi|168489054|ref|ZP_02713253.1| sensor protein YycG [Streptococcus pneumoniae SP195]
 gi|194398370|ref|YP_002037827.1| histidine kinase [Streptococcus pneumoniae G54]
 gi|147927661|gb|EDK78686.1| sensory box sensor histidine kinase [Streptococcus pneumoniae
           SP9-BS68]
 gi|183572355|gb|EDT92883.1| sensor protein YycG [Streptococcus pneumoniae SP195]
 gi|194358037|gb|ACF56485.1| histidine kinase TCS02 [Streptococcus pneumoniae G54]
 gi|332073564|gb|EGI84043.1| sensory box protein [Streptococcus pneumoniae GA17570]
          Length = 449

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 73/223 (32%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +         +      L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSLLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T+ ++ ++++ I S+  +G      +   +I D        
Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|95930019|ref|ZP_01312759.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95133988|gb|EAT15647.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 431

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56
           + +       +  L AL  + + + H+I +P+G I +S +LL       +   + L+ + 
Sbjct: 200 LEEAEENLRRTDRLAALGEMSAGLAHEIRNPLGIIASSAQLLQNHINPTDSGQLDLLDVI 259

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWT 105
              +      +     +    +  +    +E +I+  +   + V               T
Sbjct: 260 REESTRLNDLVTTFLRFGRPGEPQLKSYQLENLIDKTVEQLRPVAEQHQVALTFSPAHPT 319

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +    ++LLNL + A  +    G V I      N+    +  NG      E   
Sbjct: 320 TTVYVDADMIQQLLLNLLLNAIEACSEQGNVVIHALKKDNQAHIIVTDNGEGI-AKEVLP 378

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +    +      +       +A  +   +       H       L 
Sbjct: 379 TIFNPFFTTKDGGTGLGLATAHNIAQSHGGDIHVTSQPGHGSRFVVTLP 427


>gi|291515872|emb|CBK65082.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 623

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    ELL +    +   +   +   + 
Sbjct: 393 LREAKKRAEESNKLKSAFLANMSHEIRTPLNAIVGFSELLADESRHETRREYTDIILRNN 452

Query: 61  IIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+ +               +      + D    + D  ++        +  +     
Sbjct: 453 TLLLQIISDVLDLARIESGRTDIERTQFDARDLCREVADSLRLQRRPGVELRVEEGLPEF 512

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              +  +  A++L N    A     +G       +       F ++  G     PE   +
Sbjct: 513 PVTEYRKGLAQVLNNFTRNALKFTEKGSVTIGFRRIPG-HIRFYVRDTGIGI-APEDRER 570

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  V  ++      +       +A +    +  + +          + 
Sbjct: 571 IFERFVKLDTFTQGTGLGLSICKSIAEQLGGSVGVDSVAGEGSCFRIDIP 620


>gi|257093441|ref|YP_003167082.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045965|gb|ACV35153.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 681

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 58/235 (24%), Gaps = 26/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     S     +   SR+ H++ +P+ AI    ++LD   ++      +RL   S  
Sbjct: 291 ARDEAERASRAK--SDFVSRMSHELRTPLNAILGFAQVLDREPLQASHQDYVRLIMRSGQ 348

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L+ +             + L  I       IA    +                     
Sbjct: 349 HLLELVNQVLDLAKIEAGRLTLEAIVFDFRQTIAEVGGIVAQRAADKGLDFIPKVAEDLP 408

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       ++L+NL   A      G              +FS++  G          
Sbjct: 409 SHVIGDPTRLRQVLINLTANAVKFTEAGSVELAIDAH-DQRLLFSIRDTGIGMDEAALG- 466

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++          +        +       L       +  +            L 
Sbjct: 467 RLFLPFGQGDESITRKYGGTGLGLMIARELVQAMGGEIEVDSKPGAGSCFRFSLP 521


>gi|228925838|ref|ZP_04088922.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228833853|gb|EEM79406.1| hypothetical protein bthur0010_5640 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 463

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454


>gi|229173309|ref|ZP_04300853.1| hypothetical protein bcere0006_24100 [Bacillus cereus MM3]
 gi|228610003|gb|EEK67281.1| hypothetical protein bcere0006_24100 [Bacillus cereus MM3]
          Length = 432

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 202 RSKMIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIEHILEELH 261

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           R   +           +               I  ++         +   ++   I  ++
Sbjct: 262 RAQGIIDDYLTFAKPASEKSDHISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 321

Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  +    NL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 322 QHFQQCFLNLIKNGIEAMPNGGTLHISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 380

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+  L K
Sbjct: 381 STKTKGTGLGTMVAVKIIETMQGSLKIRSVVNKGTTLTITLPK 423


>gi|261408623|ref|YP_003244864.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261285086|gb|ACX67057.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 455

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 19/237 (8%), Positives = 59/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +     L     + + H++ SP+ +I    + L +           + +
Sbjct: 213 LARSFEDMMHELQQLEQLRREFVTNVSHEVQSPLTSISGYAQALKQVNLSDDERRRYLDI 272

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWT 105
           I   +         +                            V        + +Q    
Sbjct: 273 IIAEAKRMSKMSDSLLKLSLLESQSQQPGLSTLSLDEQIRRVIVALQPQWAARSIQFELD 332

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              + ++ +     ++  N+   +      GG + +S++   N     +   G      +
Sbjct: 333 LLPVKVTADHDQLNQVWTNIIGNSIKFSKDGGVINVSIKQDMNNVTVRISDTGIGISLED 392

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  +   +    V  +   ++  +  E            L 
Sbjct: 393 QKRIFERFFKTDRSRSRKYEGSGMGLAIVKQIVSLHQGDIRVESEPGQGATFIVTLP 449


>gi|289578660|ref|YP_003477287.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289528373|gb|ADD02725.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 456

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I   +E L     +     D+ + +I   S      +  
Sbjct: 225 EKIRNEFVANVSHELRTPLTSIRGFIETLRNGAIENPEARDKFLDIIDFESERLTRLIND 284

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRE 114
           +              T   +    + DI  +++          +                
Sbjct: 285 ILTLSEIENVKEGYPTEETELDNEIEDILYIMDKMARNKNITLIKDLNCPGLVINTNKDR 344

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++++NL        P GG V +S ++  ++ I  +K NG      E   ++ +     
Sbjct: 345 FHQMMINLIDNGIKYTPEGGFVKVSTREEGDKIIIEVKDNGIGI-SKENIPRLFERFYRV 403

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                  +    +    V  +    K  +  E         
Sbjct: 404 DKSRSRKLGGTGLGLAIVKHIVESMKGEISVESEIGKGTKF 444


>gi|242242957|ref|ZP_04797402.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233558|gb|EES35870.1| possible histidine kinase [Staphylococcus epidermidis W23144]
 gi|319401006|gb|EFV89225.1| his Kinase A domain protein [Staphylococcus epidermidis FRI909]
          Length = 565

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    D  + +I   S    
Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +  I + D  Q       +  + ++         
Sbjct: 396 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAQNKRIKIQSEIEKDVIIEAH 455

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             + A+++ NL   A        KV + V  + N+    ++  G      +    F +  
Sbjct: 456 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 515

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+  +       +   L
Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSEPGKGSIFKVL 561


>gi|148654588|ref|YP_001274793.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566698|gb|ABQ88843.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 695

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 61/241 (25%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61
            ++     +  L +   S I H++ +P+ +I    ELL        E  + ++     A 
Sbjct: 447 SDVTREREADRLKSEFLSIISHELRTPLTSIMGYTELLLAREFSPAERREFVQTVYNEAN 506

Query: 62  IRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +                     +V     + D+   + + I+    + +        
Sbjct: 507 HLYQIVEDLLGVTRLEAGNVRLNQWAVSLRQIVSDLTAQLNNQISGKHTMLIDIPPHLPP 566

Query: 111 LSRER---AKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSLKINGNLA 158
           +  +R    ++L+NL   A    P                           ++   G   
Sbjct: 567 VYADRDKVRQVLVNLITNAVKYSPNGGEIRLTISDNVELPPDHPRGKFVRVAVSDQGIGI 626

Query: 159 RFPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    + +           I    +       L   +  R+  E   +        L
Sbjct: 627 APEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNKGSTFYFTL 686

Query: 214 E 214
            
Sbjct: 687 P 687


>gi|323706156|ref|ZP_08117724.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534449|gb|EGB24232.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 565

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 58/218 (26%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + H++ +P+  I +  E L     +  + +  + +I          +K + L    
Sbjct: 348 FVANVSHELRTPLTTIKSYTETLLNDGVDDEMRNRFLYIIDKEVDRMTRLVKDLLLLSRM 407

Query: 74  TGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
             +                 L  I+   +                      +  +++LN+
Sbjct: 408 DSNGKLNLTEANLNEFVEEVLYKIKIEAQKKNQKLLFCAGEEKRNVNIDKDKMEQVILNI 467

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
              +      GG V +  +   +     +  NG      +   +I +            +
Sbjct: 468 VSNSIKYTNPGGYVRVFTKYLDDYAYIVVNDNGIGIPKKDLP-RIFERFYRVDKGRSREL 526

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E        ++  L+
Sbjct: 527 GGTGLGLAIAKEIVTAHGGEINIESEIGVGTTVTVKLK 564


>gi|320352886|ref|YP_004194225.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
            propionicus DSM 2032]
 gi|320121388|gb|ADW16934.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
            propionicus DSM 2032]
          Length = 1494

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 18/231 (7%)

Query: 1    MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            + ++    L +  L A  +L + I H+  +P+  I   L+ L +       E E++    
Sbjct: 1244 LQESQKQVLHAEKLSAIGMLSASIAHEFNNPLQGIMTVLKGLKKWVTLEDEERELVDAAI 1303

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTG 106
              S      ++ ++     +    +L+ +             V        +R       
Sbjct: 1304 GESERMKHLIRSLQEFNRPSSGRKTLMNIHQALDSLLLLQTNVFTKKQIRVERDYADDLP 1363

Query: 107  EKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                +  +  ++ LNL   A  +   R G V I      ++   ++K +G     PE   
Sbjct: 1364 AIEAVPDQIKQVFLNLLTNACDACGRRNGVVAIRTWREGDKVAVAVKDSGGGI-APENLD 1422

Query: 166  QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I      +   +    +       + H +   +  E         + +L 
Sbjct: 1423 RIFQPFFSTKEAVKGTGLGLSVSHGIVHAHGGEIRVESRLGKGATFTVVLP 1473


>gi|260892545|ref|YP_003238642.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260864686|gb|ACX51792.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 467

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 19/237 (8%), Positives = 65/237 (27%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A+ +    + ++          + + H++ +P+ +I   ++ + +       +   +  
Sbjct: 223 LARTLDAMAAQLEAIDRERQEFLAYVSHELRTPLTSIRGFVQGMLDGTIPPEKQQSYLAR 282

Query: 53  IRLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   +      +  + +            +  T     L  + ++   +     V    +
Sbjct: 283 VFSETERLRRLVDDLLMLVRLRSGQFTFNWQGTDLRRVLTTVEEVMSPLALEKGVQLEFR 342

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A    P GG+V +  + +       +   G      
Sbjct: 343 TQGELPVYADEGRLVQVFMNLVDNAIKFSPPGGRVLVEAEKTDGLLRVQVTDEGPGIPPE 402

Query: 162 EKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E           +          +      L+  ++   +      +     + LL 
Sbjct: 403 ELPRIFDSFYSGTARSRSELGTGLGLAISRLIVEKHGGHISVRNRPEGGCTFTVLLP 459


>gi|322418457|ref|YP_004197680.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320124844|gb|ADW12404.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 369

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 64/225 (28%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
                 +  L AL  L + + H+I +P+ +I  + E+L E         E ++++   S 
Sbjct: 143 EEQLRRAERLSALGELSAILAHEIRNPLASIRGTAEILMEEGTPAPRRGEFLEILVKESD 202

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWTG----EKIDL 111
                ++          +      + +    +       A    V++  +       +  
Sbjct: 203 RLNRVVEDFLRMARPEPADKRECDINEELGNMVTLLSAQARGSNVRLELSCGALPRLVAD 262

Query: 112 SRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +  +  +N+ + A  + P GG+V    S               G      +    I +
Sbjct: 263 PEKLRQAFMNIMLNAIQASPEGGRVLVATSCDPKAGSVEIRFCDEGVGI-AADAIAHIFE 321

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   +   L  E           +L 
Sbjct: 322 PFFTTKGSGTGLGLPITRKIIEGHGGTLEVESGPGRGATFKVILP 366


>gi|89893291|ref|YP_516778.1| hypothetical protein DSY0545 [Desulfitobacterium hafniense Y51]
 gi|89332739|dbj|BAE82334.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 457

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 75/244 (30%), Gaps = 31/244 (12%)

Query: 1   MAKNICFN---LSSMDLVA--LLCSRICHDIISPIGAIHNSLELL------------DEV 43
           + K          +  + +  LL + I H+I +P+  I  S+E L            ++ 
Sbjct: 209 LKKKRELESALRQADKMASVGLLAAGIAHEINNPMATIGLSVEELRYELQRMNSAQGEKD 268

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIA 95
              D  + LI   +       + +        + ++     ++ ++              
Sbjct: 269 QDIDRYLDLIARQADRCSQITQNLLDFSRQERNQNNAYDFYNLNELVQKALELNHYMLQK 328

Query: 96  VDKRVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
              +V+    G    +  +     +++ NL   A  ++ +GG + +  Q+  +     + 
Sbjct: 329 NQVQVRYDLDGAVPLIWGDGPGIQQVIFNLLCNAAQAMKQGGALKLVTQNEADCVCLQVM 388

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG      +   ++ +    +        +       L  +    ++ +        ++
Sbjct: 389 DNGEGISNEDLK-RVFEPFFTTKPPGLGTGLGLAVSYGLIKQAGGTIVMDSRLGEGTTVT 447

Query: 211 ALLE 214
             L 
Sbjct: 448 VKLP 451


>gi|312602473|ref|YP_004022318.1| sensory transduction protein kinase [Burkholderia rhizoxinica HKI
           454]
 gi|312169787|emb|CBW76799.1| Sensory transduction protein kinase (EC 2.7.3.-) [Burkholderia
           rhizoxinica HKI 454]
          Length = 685

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 60/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           +A        +     L     + + H++ +P+ AI    +LL     +   ++      
Sbjct: 290 LANERQARSEAERASRLKDEFVATLSHELRTPLNAIVGWAQLLLRDASDPARVEKGLQVI 349

Query: 58  MSAIIRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                    M                        VD +  +    Q+  D   +     +
Sbjct: 350 HRNARLQSQMIDDLLDMSRIMAGKVRLNVQRVELVDVITDVIATVQLAADAKELRVMPVL 409

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         +I+ NL   A    PR G+V +++     E    +   G   R   
Sbjct: 410 GAPAVVNGDPARLQQIIWNLLTNAIKFTPRRGRVAVTLTSGDGEARLVVSDTGCGIREAF 469

Query: 161 -PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
            P  F +    +           +    V  L   +   +      +      +  L 
Sbjct: 470 LPHVFERFRQEDASTTRQFGGLGLGLSIVKELVEMHGGHITAASDGEQRGATFTVTLP 527


>gi|284046954|ref|YP_003397294.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951175|gb|ADB53919.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 1010

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           A+       +  L     + + H++ +P+ +I   +EL+ E         +   + ++  
Sbjct: 747 AQKRAAEAEADRLKNEFFALVSHELRTPLTSIVGYVELVLEGEVGEVNDEQARFLGIVER 806

Query: 56  SSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +       +  +               G       +    D  +   + + V    +   
Sbjct: 807 NGKRLQRLVGDLLFVAQVEAGTLNLEHGDATLEAIVRDAVDGARPRAEQVGVTVAAETEP 866

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    +++ NL   A    P GG VT++++   +E   ++   G      E+ 
Sbjct: 867 VPPIRGDADRLGQLVDNLISNALKFTPSGGDVTVTLRIDGDEVALAVADTGIGIPADEQA 926

Query: 165 TQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    S      I    +       +A  +  R+  E           +L 
Sbjct: 927 RLFDRFFRASTAVEGEIPGIGLGLSICQAIAEGHGGRIEVESEVGRGTTFRVVLP 981


>gi|116332710|ref|YP_794237.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116098057|gb|ABJ63206.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           brevis ATCC 367]
          Length = 618

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 29/225 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---RL 69
             S + H++ +P+ ++ + +E L      +  +  + +++ +  +   I  +  +     
Sbjct: 381 FVSNVSHELRTPLTSVRSYIEALSEGAWKDPKVAPDFLKVTQEETDRMIRMINDLLTLSR 440

Query: 70  AFGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSRER 115
               T  VD  +              D+    +D       ++  +          +   
Sbjct: 441 MDSGTQKVDLEMVNLNELFNYVLDRFDMMLKQDDQPEKTYTIKRDFTKRDLWVEIDTDRF 500

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++L NL   A    P GG VT  + ++ N  I S+   G      +   +I D      
Sbjct: 501 TQVLDNLMNNAIKYSPDGGVVTARLLETHNNVILSVSDQGLGIPRADIP-RIFDRFYRVD 559

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +      R+  +  +         L 
Sbjct: 560 KARSRAQGGTGLGLAISREVVQMLGGRIWVDSREGRGSTFYISLP 604


>gi|294498882|ref|YP_003562582.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294348819|gb|ADE69148.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 459

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           + KN       ++    +     + + H+I SP+ +I      L +       + + + +
Sbjct: 213 LTKNFNQMTKELNKIETMRQEFIASVSHEIQSPLTSIRGFSAALKDDIVSEDKKIQYLTI 272

Query: 53  IRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           I   S         +                           +  +   +   +  + + 
Sbjct: 273 IEKESTRLSQLSSNLLKLASLDSEHQTLTLQQYRLDEQIRHVVMALEPQWTKKNIEIDLD 332

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +  +++  ++   ++ LNL   A    P  G V IS+     E    +K NG      +
Sbjct: 333 LSNVQMEADKDLLEQVWLNLVTNAIKYTPENGLVKISIHQKNEEIDVKIKDNGIGIAEED 392

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F      +   T+    +       +   ++  +  E   +   + +  L 
Sbjct: 393 QKYIFESFYKVDKSRTLKGSGLGLAITKKIVRLHEGAIRVESKKEQGSIFTVTLP 447


>gi|257457920|ref|ZP_05623079.1| sensory box histidine kinase [Treponema vincentii ATCC 35580]
 gi|257444633|gb|EEV19717.1| sensory box histidine kinase [Treponema vincentii ATCC 35580]
          Length = 404

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 66/234 (28%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49
            K    N   ++ L +L  L + + H+I +P+ AI   ++LL +                
Sbjct: 138 RKREEINNRRLENLASLTNLAAAVAHEIKNPLAAISIHVQLLRKNFKACNLEINAKAQKH 197

Query: 50  MQLIRLSSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           + ++          +       + ++  F      + +  L    Q       +    Q+
Sbjct: 198 LDVVEEEIERLNKIVVDFLFAVRPLQCEFAPVDVNELIKNLFATFQEEFSAAGITFVSQL 257

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARF 160
                 I       +  L   +    +          ++ +  + +   ++   G     
Sbjct: 258 DSELPVIQADERFLRQALINILTNAKAAMMPAGGELGVTTRFDEEKVYITVTDTGKGI-P 316

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P+   +I +    +  D   +       +  E+   +            + +L 
Sbjct: 317 PDILHKIFEPYFTTKPDGSGLGLTMTYKVIKEHGGDIQVHSEVGSGTRFTLMLP 370


>gi|254562007|ref|YP_003069102.1| sensor hybrid histidine kinase with two PAS and two response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|254269285|emb|CAX25251.1| putative sensor hybrid histidine kinase with two PAS and two
           response regulator receiver domains [Methylobacterium
           extorquens DM4]
          Length = 622

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            K++   L  S  + AL  L   I HD  + + AI  SLEL    + +      ++    
Sbjct: 246 QKSLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNAT 305

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            ++          L F R    +   VD    +  +  +    +     V      +   
Sbjct: 306 GAAQRGSALTKRLLSFSRSNDAHARPVDPNALIEGMSALFGSSLGSHVSVVRDLEPDMPF 365

Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157
              +  ++ L +  +   +               R               + S+   G  
Sbjct: 366 ALVDPDQLELAVLNLCINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTG 425

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   ++ +    +        +    V  LA +   RL           +   L +
Sbjct: 426 I-PPEILERVCEPFFTTKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484


>gi|239995633|ref|ZP_04716157.1| osmolarity sensor protein [Alteromonas macleodii ATCC 27126]
          Length = 439

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 57/204 (27%), Gaps = 6/204 (2%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           ++ + I HD+ +P+  I  + E+L    +   +  V  +  ++++               
Sbjct: 232 IMTAGISHDLRTPLTRIRLASEMLPEDQDWIKDGIVNDIEDMNAIIDQFIDYARYDTEEV 291

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
           T   D    + ++ Q           ++++             +++ NL   A       
Sbjct: 292 TQETDLNAIIAELVQARHLDDKHHIELKLNAIPPLSLRRIAMKRVIDNLIENAFKYGSDD 351

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190
             ++      +      ++  G      E    F     G+         +    +  + 
Sbjct: 352 IAISSFYNRHEKRVYCKVRDFGPGIPEAELDGVFMPFAQGDKARNSSGSGLGLAIIRRIV 411

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   +         +V    L 
Sbjct: 412 EAHDGEVTLRNHPQQGLVAEFYLP 435


>gi|220904834|ref|YP_002480146.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219869133|gb|ACL49468.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 567

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 72/235 (30%), Gaps = 29/235 (12%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIG-------------------AIHNSLELLDEVG 44
              L S  + AL  + + + H++ +P+                    A+ N  E+L+   
Sbjct: 322 ARMLQSSKMAALGKMAAGVAHEVNNPLMLIQENAGWIRDLLDDEKPEAMKNYQEILESTE 381

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
             D+ ++  +  +          R+  G T  + + +     E +  +    +  +   +
Sbjct: 382 KIDQHVKRAKGITQRM--LGFGRRMNPGRTEILINSLTDQAAEMLKTEATNRNIDIIREY 439

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +   +  + A++          A  ++ + G +TI     K         +G      
Sbjct: 440 DPQVPVILSDPAQLEQIFINIIDNAIDAIGKNGSLTIRTLAWKKGVRILFTDSGPGM-DQ 498

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E  T+I D    +    +   +       +  +   R+  +         S  L 
Sbjct: 499 ETVTRIFDPFFTTKKVGEGTGLGLAICYTILEKLGGRIEVQSRLGEGTTFSITLP 553


>gi|163852260|ref|YP_001640303.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|218531018|ref|YP_002421834.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|163663865|gb|ABY31232.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|218523321|gb|ACK83906.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 622

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            K++   L  S  + AL  L   I HD  + + AI  SLEL    + +      ++    
Sbjct: 246 QKSLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNAT 305

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            ++          L F R    +   VD    +  +  +    +     V      +   
Sbjct: 306 GAAQRGSALTKRLLSFSRSNDAHARPVDPNALIEGMSALFGSSLGSHVSVVRDLEPDMPF 365

Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157
              +  ++ L +  +   +               R               + S+   G  
Sbjct: 366 ALVDPDQLELAVLNLCINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTG 425

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   ++ +    +        +    V  LA +   RL           +   L +
Sbjct: 426 I-PPEILERVCEPFFTTKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484


>gi|94967781|ref|YP_589829.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549831|gb|ABF39755.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 390

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 62/224 (27%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54
                 +  L  L  L + + H+I +P+  I   ++++      +           Q   
Sbjct: 157 RTQMSRAEHLATLGELAAGLAHEIRNPLAGIAGVIDIIGRDLPIESPACAVVKEVKQEAM 216

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----ID 110
             +      L+  R         D    +        +     +        +       
Sbjct: 217 HINRILTDLLETARPKHPNFRREDLDATISHAIMFAREQATTKQVHIEFLQQKNVRPVEH 276

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++LLN+ + A  ++ R G + +S+++  +    S+  NG           I   
Sbjct: 277 DPAQIHQVLLNMLLNAIQAVAREGHIVVSLENRGDYAAISITDNGPGIPPDTLKN-IFRP 335

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  ++  R+              LL 
Sbjct: 336 FFTTKGHGTGLGLSLARRMVEDHAGRIEVTSKVGEGTTFVVLLP 379


>gi|28210825|ref|NP_781769.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
 gi|28203263|gb|AAO35706.1| phosphate regulon sensor protein phoR [Clostridium tetani E88]
          Length = 571

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 64/222 (28%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++ +   + + H++ +P+ +I    E L   ++   +D+ + +I   S      +  + 
Sbjct: 345 ENIRSQFVANVTHELKTPLTSIRGFAETLKYVEDRETKDKFLNIINDESDRLTRLINDIL 404

Query: 68  ---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                     +        + L  +  + +       ++  +                ++
Sbjct: 405 ALSHIENSNSMKLENISINEMLEDIVYLMENSAKDKNIELFIVGDKMQPIKGDRDRFKQM 464

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           ++NL          GGKV I  +   N  I  ++  G      E   ++ +         
Sbjct: 465 MINLVDNGIKYTEEGGKVYIGAKKEDNNCIVWVEDTGVGI-SKEHVERLFERFYRVDKAR 523

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +     +    V  +       +  E  +         + 
Sbjct: 524 SRSQGGTGLGLAIVKHIVLGFGGTINIESEEGKGSKFIIRIP 565


>gi|169349479|ref|ZP_02866417.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552]
 gi|169293554|gb|EDS75687.1| hypothetical protein CLOSPI_00197 [Clostridium spiroforme DSM 1552]
          Length = 562

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 66/225 (29%), Gaps = 20/225 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLK 65
           +M +     S + H++ +P+ +I    ELL+     +     + +  I     +    + 
Sbjct: 336 AMKMRQEFFSNVSHELKTPMTSIRGYSELLETGVINDEQAAKKALDKIHTEVDNMSNLIN 395

Query: 66  FMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRER 115
            + +               V     + +I   ++  I                +   +  
Sbjct: 396 DILMISRLENKDVDVIKHPVHIEPLVNEIIDTMQVEIDKRNLTVYKDINDIIYLSNHQHM 455

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172
            ++L NL   A     + G +TI   + ++  +  +   G      +    F +    + 
Sbjct: 456 HQLLSNLITNAIKYNKKDGSITIKAYEVEHNIVIEVSDTGRGISKIDQGRVFERFFRCDE 515

Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     +    V  + H  +  ++     D       +L K
Sbjct: 516 GRDKETGGTGLGLAIVKHIVHYYQGNIVLTSKLDEGTTFKIILPK 560


>gi|251798474|ref|YP_003013205.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247546100|gb|ACT03119.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 488

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 67/240 (27%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I   L   +    L S I HD+ +PI  I    E + +         ++ +  I  
Sbjct: 247 LYESIQLQLHYEENRKQLISNISHDLRTPITTIKGYAEGIRDGVTNTEEKLNKYVSAIHT 306

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            +      +  +          +                A D  ++       +      
Sbjct: 307 RASDMERLVNELLYFSKLDLKKEPFSFQKLELSPFLYNTADDMSIEFHNQHVDVSWENMP 366

Query: 116 AK-------------ILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA--- 158
            +             +L+NLF      + +  K         +++ + ++  NG      
Sbjct: 367 EQPLFVLADREKLKRVLINLFDNCLKYMNQPPKRITIEVNRDEDDVVITITDNGPGIPEE 426

Query: 159 ---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 E+F ++     ++      +       +   +  ++           +S  L++
Sbjct: 427 AIPHIFERFYRVEPSRNQTAAGGSGLGLAIAQQIIEGHGGKIRASSELGRGTSISFTLKR 486


>gi|298675091|ref|YP_003726841.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288079|gb|ADI74045.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 996

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 72/243 (29%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL------DEVGIED 47
            K    +L +  L A         L + + H++ +P+ +I    ++L      D    + 
Sbjct: 752 RKQAEESLINSKLEAEAASQAKSELLANVSHELRTPLTSIIGFSDILLKGKLGDLNESQK 811

Query: 48  EVMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
             +  +  S    +  +  +         +            +     E +         
Sbjct: 812 TYLSKVHRSGKHLLDLITDILDLSKIESGKHELHCEKVSIPQLMKDLKENIYPFASQKGL 871

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGN 156
            + +        +  ++ K+   L+ + + ++    +  VT+ +  + N+ +FS+   G 
Sbjct: 872 EINIDINRSIEYIYADKIKLRQILYNLVYNAVKFTEQGSVTVKLDWNDNDMLFSVIDTGI 931

Query: 157 LARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                ++          D           +    V  L   +  ++  E  +      S 
Sbjct: 932 GIPADKQDEIFDSFKQLDSGASRRYSGTGLGLALVERLVEMHGGKIWVESEEREGSRFSF 991

Query: 212 LLE 214
           ++ 
Sbjct: 992 IIP 994


>gi|254445944|ref|ZP_05059420.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260252|gb|EDY84560.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 389

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 74/232 (31%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQ 51
                + S  + +  LL + + H++ +P+ ++   L+L++                  + 
Sbjct: 149 TKEETIESEKIASILLLAAGVAHELGNPLNSLTIHLQLMERQLKKLEATPASEKLGNSLD 208

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VS 103
           + R         +K    A         ++ L  + + + + +  +   +        V+
Sbjct: 209 VCRGEVERLDGIIKNFLEAIRPQDPDFQVLDLSLVLEEVLEVVGSELNDRGISVEVEVVT 268

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     +  ++  NL   A  ++  GG + I  +  +         +G   R  + 
Sbjct: 269 EAPIVRADRNQMKQVFFNLIKNAMEAMQPGGSLKIVSRSDEERIYLRFGDSGGGIRKSDL 328

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++      +  +   +    V  +   +  ++  +  +    V++  L K
Sbjct: 329 S-RVFQPYHTTKREGSGLGLMIVQRIIRGHGGQVGIDSQEGIGTVVTLELPK 379


>gi|153808637|ref|ZP_01961305.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
 gi|149128959|gb|EDM20176.1| hypothetical protein BACCAC_02935 [Bacteroides caccae ATCC 43185]
          Length = 869

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 57/235 (24%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSNFTEEEVTQFIATINK 692

Query: 56  SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---- 103
           +    +  +                     +  + L  +       +     + +     
Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPAGVELVLRMPAG 752

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G       +D +       ++  G       
Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTGSGFITFGYEEDEEPGYTRIFVEDTGVGISEEG 812

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +    K  +            +  L 
Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 865


>gi|301060601|ref|ZP_07201436.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300445304|gb|EFK09234.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 612

 Score =  122 bits (307), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 62/239 (25%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIED 47
           + +     ++   L +L  L + I H+I +P+ A+     LL           +      
Sbjct: 364 LKEAQEQVIAQEKLASLGKLSATIAHEINNPLAAVLTYNRLLIKQNRNGRLTPEREDDIA 423

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV 102
             + ++   +      +K +      +        + +I       +  D      +V  
Sbjct: 424 RYLTIMESETARCGEIVKNLLAFSRQSRISIENKNIEEIVDRTLALLSHDLEMKGVKVVK 483

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNL 157
               +  ++  +  +I   L  V   +           V       +      +   G  
Sbjct: 484 HIESDLPEIQCDFRQIQQALLNVVGNASEAMDGGGILTVAARRSVKRPNMEIRISDTGCG 543

Query: 158 ARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E    I +    +  +     +    V  +   +   +  E         +  L 
Sbjct: 544 V-PKEHLKSIFEPFFTTKEEGKGVGLGLSVVYGIVTRHHGTIEVESEPGEGTAFTICLP 601


>gi|295694718|ref|YP_003587956.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
 gi|295410320|gb|ADG04812.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus tusciae DSM 2912]
          Length = 440

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 69/232 (29%), Gaps = 20/232 (8%)

Query: 1   MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51
           + +     L     L  +  + + I H+I +P+ +I   L+++ E         E +  +
Sbjct: 207 LGERFENQLQRQEKLATVGKIAAGIAHEIRNPLTSIKGFLQIMRENFIRSHMDKEFQYTE 266

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           ++          +  + L               + + GL  +         ++  + +  
Sbjct: 267 VMLAEIDRVNELVGELLLLSRPRDVKLASTEVEELVTGLAPLISSETLLHDIEFHLCIKP 326

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPE 162
             + +       +++LNL   A  ++       +   V   +N     ++  G       
Sbjct: 327 VPKVLADPELLKQVVLNLVKNAVEAMEHGGTLTLCTDVDREENLVRIDVQDTGPGIPAY- 385

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D    +  +   +       +  +    +       +    S LL 
Sbjct: 386 AMDRIFDAFFTTKENGTGLGLPICQRIISDLGGMIRV-SSKGYGTTFSILLP 436


>gi|149911128|ref|ZP_01899754.1| signal transduction histidine kinase regulating
           C4-dicarboxylatetransport system [Moritella sp. PE36]
 gi|149805805|gb|EDM65795.1| signal transduction histidine kinase regulating
           C4-dicarboxylatetransport system [Moritella sp. PE36]
          Length = 604

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 67/232 (28%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +       + +  L  L  L + I H++ +P+ AI +  +     L     +        
Sbjct: 366 LRDTQKELIQTAKLAVLGQLSASISHELNNPLAAIRSYADNALVFLQREQHQSTQDNLQR 425

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           ++ L    +  +     F R + G   +V     +    ++           + V     
Sbjct: 426 IIHLTERMAKISSQLKFFARKSSGELHTVPLRNVINMAVELVKPQLKNNQVSITVDDANI 485

Query: 108 KIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + ++ ++ ++   L  +   ++          + I +   + + I  +  +G+      
Sbjct: 486 DVQVNVDQVQLEQVLVNLLSNAMQAVEDTSEKHIHIILCRHQEQVIVQVDDSGSGINPVN 545

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + D    +      +       +       +  E   +     S  L 
Sbjct: 546 LPQ-LFDPFFTTKDTGLGLGLSISHKIMRNMHGNIKAENRPNSGARFSLSLP 596


>gi|297530208|ref|YP_003671483.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. C56-T3]
 gi|297253460|gb|ADI26906.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. C56-T3]
          Length = 420

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55
           M +++     +  L     + + I H+I +P+  +   L+LL     +     V +L+  
Sbjct: 182 MFQSLNMMKETEKLAVAGRIAAGIAHEIRNPLTTVRGYLQLLKSDLPDRIASLVERLLIP 241

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGE 107
               A   +                  L            Q       VD    +    +
Sbjct: 242 ELDRANDIITDFLNIAKPADVKMETFNLHRFLRDDVGVLLQSEALLHNVDVHFDLDDQLD 301

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARFPEK 163
             +++ +R+++L     +   ++      T+ V     +    ++     +G        
Sbjct: 302 DYEMNGDRSQLLQVFLNLFRNAVEAKVAKTMRVSICSRKINHLVQLRFCDDGPGIPPS-V 360

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + D    +      +       +   ++  +  +  D H         
Sbjct: 361 IDHVFDPFFSTKETGTGLGLSLSKKIVELHRGTMKVQS-DAHGTCFLIEFP 410


>gi|289433261|ref|YP_003463134.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT]
 gi|288946981|gb|ADC74678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT]
          Length = 1402

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 2    AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
             +       +     L A+  + + I H+I +P+  +    ELL         +Q     
Sbjct: 1019 TERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGFAELLANRPDLPADIQDSIKI 1078

Query: 57   S--------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107
                           L F R        V+    + +   +           +   +   
Sbjct: 1079 INNGSLRVVEIVKRLLTFARQTRPIVSKVNITDVIDNSLALRSYVLETAGISIIRDYAPN 1138

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFP 161
               +  + A+I      +   +     K+          + +    + S K +G     P
Sbjct: 1139 LPWIDIDPAQIQQVFLNLILNAEQSMKKIHEKGTLTVKTKKAGKYILISFKDDGAGI-PP 1197

Query: 162  EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I      +        +       +  E+  ++  E   D        L 
Sbjct: 1198 DVMDKIFQPFFTTKDPGQGTGLGLSLSQGIILEHGGKIWAENNPDGGATFMIELP 1252


>gi|261419833|ref|YP_003253515.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. Y412MC61]
 gi|319766648|ref|YP_004132149.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. Y412MC52]
 gi|261376290|gb|ACX79033.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. Y412MC61]
 gi|317111514|gb|ADU94006.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacillus sp. Y412MC52]
          Length = 420

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55
           M +++     +  L     + + I H+I +P+  +   L+LL     +     V +L+  
Sbjct: 182 MFQSLNMMKETEKLAVAGRIAAGIAHEIRNPLTTVRGYLQLLKSDLPDRIASLVERLLIP 241

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGE 107
               A   +                  L            Q       VD    +    +
Sbjct: 242 ELDRANDIITDFLNIAKPADVKMETFNLHRFLRDDVGVLLQSEALLHNVDVHFDLDDQLD 301

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARFPEK 163
             +++ +R+++L     +   ++      T+ V     +    ++     +G        
Sbjct: 302 DYEMNGDRSQLLQVFLNLFRNAVEAKVAKTMRVSICSRKINHLVQLRFCDDGPGIPPS-V 360

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + D    +      +       +   ++  +  +  D H         
Sbjct: 361 IDHVFDPFFSTKETGTGLGLSLSKKIVELHRGTMKVQS-DAHGTCFLIEFP 410


>gi|158522858|ref|YP_001530728.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158511684|gb|ABW68651.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 481

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSM 58
           M K++   +  M  +  + + + H+I +P+ A+  ++E+L+      + +  +L+ +   
Sbjct: 239 MRKHVD-RVERMAAIGEMAAGLAHEIKNPLAALTGAIEMLNSELTFFDPDGARLMGIVKR 297

Query: 59  SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEK 108
                         F R   G   SV     + D   + E  I  D  V    ++     
Sbjct: 298 ETKRLNTLVTNFLLFARPQRGKAQSVLLDRVIRDTLDLFEKGINEDWIVCRSVLAPNIWV 357

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEK 163
                   +IL NL + A  ++   G+    +         +     +  NG      + 
Sbjct: 358 DVDPEYLRQILWNLLLNAADAIRDSGRKEGVITVTTASARDHLAAIEVADNGCGMPESD- 416

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              I +    +      +    V  L      R+  E +       S  LEK
Sbjct: 417 MDAIFNPFFTTKPKGTGLGLSVVHRLVEAYGGRIDVESLQGQGSRFSLFLEK 468


>gi|73749300|ref|YP_308539.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
            CBDB1]
 gi|73661016|emb|CAI83623.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
            CBDB1]
          Length = 1434

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 2    AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
             +       +     L A+  + + I H+I +P+  +    ELL         +Q     
Sbjct: 1051 TERQKLREQADVANRLAAVGEMAAGIAHEINNPLTGVIGFAELLANRPDLPADIQDSIKI 1110

Query: 57   S--------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107
                           L F R        V+    + +   +           +   +   
Sbjct: 1111 INNGSLRVVEIVKRLLTFARQTRPIVSKVNITDVIDNSLALRSYVLETAGISIIRDYAPN 1170

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFP 161
               +  + A+I      +   +     K+          + +    + S K +G     P
Sbjct: 1171 LPWIDIDPAQIQQVFLNLILNAEQSMKKIHEKGTLTVKTKKAGKYILISFKDDGAGI-PP 1229

Query: 162  EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I      +        +       +  E+  ++  E   D        L 
Sbjct: 1230 DVMDKIFQPFFTTKDPGQGTGLGLSLSQGIILEHGGKIWAENNPDGGATFMIELP 1284


>gi|56420125|ref|YP_147443.1| hypothetical protein GK1590 [Geobacillus kaustophilus HTA426]
 gi|56379967|dbj|BAD75875.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 420

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55
           M +++     +  L     + + I H+I +P+  +   L+LL     +     V +L+  
Sbjct: 182 MFQSLNMMKETEKLAVAGRIAAGIAHEIRNPLTTVRGYLQLLKSDLPDRIASLVERLLIP 241

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGE 107
               A   +                  L            Q       VD    +    +
Sbjct: 242 ELDRANDIITDFLNIAKPADVKMETFNLHRFLRDDVGVLLQSEALLHNVDVHFDLDDQLD 301

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARFPEK 163
             +++ +R+++L     +   ++      T+ V     +    ++     +G        
Sbjct: 302 DYEMNGDRSQLLQVFLNLFRNAVEAKVAKTMRVSICSRKINHLVQLRFCDDGPGIPPS-V 360

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + D    +      +       +   ++  +  +  D H         
Sbjct: 361 IDHVFDPFFSTKETGTGLGLSLSKKIVELHRGTMKVQS-DAHGTCFLIEFP 410


>gi|172057192|ref|YP_001813652.1| histidine kinase [Exiguobacterium sibiricum 255-15]
 gi|171989713|gb|ACB60635.1| histidine kinase [Exiguobacterium sibiricum 255-15]
          Length = 546

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 68/232 (29%), Gaps = 23/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57
            K    +L   +      S + H++ +P+ +I    ELL     +   + + ++ I   +
Sbjct: 313 TKEKELDLKQSE----FVSIVSHELRTPLSSIMGFTELLMRRTLDGPRQKKYLETIHSET 368

Query: 58  MSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGE 107
           +     +  +                 +D    + ++  + +   +  +          E
Sbjct: 369 VRLAELIDDILEIQKGEDLTQGTTKKRMDLKKLVFEMRPMFDLASSKHRIRVAFEPGRYE 428

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164
                 +  ++  NL M A    P GG + I      +    +++  G        P  F
Sbjct: 429 LTASEEKMKQLFTNLIMNAIKYSPDGGLIQIKGVVQDHLIRLTVEDEGIGIPEKSVPFIF 488

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      I    +      ++  ++   +  +  +      +    
Sbjct: 489 DKFYRADNSDTRKIGGTGLGLAICQMIVKDHDGTISVQSEEGIGSTFTVEFP 540


>gi|298528914|ref|ZP_07016317.1| integral membrane sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510350|gb|EFI34253.1| integral membrane sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 621

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 67/228 (29%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57
           +       + S    A+    S + H+I +P+  +     ++   +  +    + + +  
Sbjct: 389 LKDTQQRLVQSERFAAIGEAASHMSHEIKNPLMLMAGFAGQVRRRLSEDSPEAEKLDIIV 448

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKI 109
             A    K +     +T      I       +         +   +         + +  
Sbjct: 449 NEAKRLEKMLVEVRDFTRPHKLSIKPCQPNDLIAETVKIFQDSLESSGIVCSQELSTDLT 508

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            ++ +  ++   L      A   +P GG + IS +      + S++ +G      EK   
Sbjct: 509 QVNMDPDQVKQVLVNLIKNAVEVMPEGGTLGISSKRQNQWVVVSVQDSGPGI-PAEKLKN 567

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       +  ++   +  +  + H    +  L 
Sbjct: 568 IFSPFYTTKDKGTGLGLAVSYRIIQDHGGDIFVDSQEGHGARFTIYLP 615


>gi|160889867|ref|ZP_02070870.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
 gi|156860859|gb|EDO54290.1| hypothetical protein BACUNI_02298 [Bacteroides uniformis ATCC 8492]
          Length = 896

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +       +    L +   + + H+I +P+ AI     ++ E   E+E +    + 
Sbjct: 494 MKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTDEEERLGYYEIV 553

Query: 57  SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             +    L+               +               + D                 
Sbjct: 554 ESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCPEGVELIYEPS 613

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         +++ NL   A       G ++   +       F +   G     P+
Sbjct: 614 DENIVIDGDKNRIFQVISNLIGNAFKFTTS-GHISYGYRREGKYVAFHVTDTGMGI-APD 671

Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           K  ++ +  V   +      +       +       +            + +L 
Sbjct: 672 KVDRVFERFVKVNNFAQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLP 725


>gi|89099307|ref|ZP_01172184.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89085916|gb|EAR65040.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 617

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 71/224 (31%), Gaps = 14/224 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++      +++++  L + I H+I +P+ A+   ++LL++       M    + +     
Sbjct: 381 EDQLKKSDTLNVIGQLAAGIAHEIRNPMTALKGFIQLLEDSAGSGNSM-YFNIITSELQR 439

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRE 114
               +                 DI Q++++ +          + + +  +      +  E
Sbjct: 440 IDSIINEFLILAKPQAIQYVEKDIIQLMKETVELLTAQAVLHNVQFRTDYAKNLPLVFCE 499

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDG 170
             ++      +   ++    K  I     +         S++  G+    PEK  ++ + 
Sbjct: 500 PNQLKKVFINIIKNAIEVMPKGGIITICIQKNRTGSIRISIRDEGSGI-PPEKLRKLGEP 558

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  E       V    L 
Sbjct: 559 FYTTKERGTGLGLMVTYKIIEEHEGNIEVESKMGEGTVFHIDLP 602


>gi|308270677|emb|CBX27288.1| hypothetical protein N47_I07080 [uncultured Desulfobacterium sp.]
          Length = 699

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 74/243 (30%), Gaps = 30/243 (12%)

Query: 2   AKNICFNL-SSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
            K++   L  S  L A  LL   I HD  + +  I  + EL+     +D  ++       
Sbjct: 312 QKSLEEQLRQSQKLEAVGLLSGGIAHDFNNLLTTIIGNAELVLMSIPKDNPLRENIEGIK 371

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                S+      L F R        ++      ++E+++   I  D  ++     +   
Sbjct: 372 AAGERSATLTRHLLSFSRKQVLQPTVINLNEIALNMEKMLCRMIGEDIEMKTILDPDLGQ 431

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVT---------------ISVQDSKNENIFSLK 152
           +  +  +I   +      A  ++P GGK+T                         + S+ 
Sbjct: 432 IEADSGQIEQVIMNLVVNARDAMPDGGKITIETANVDLDEDYTRSHIAVAPGPYVMLSVS 491

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G      E  +QI +    +      +    V  +  ++K  +               
Sbjct: 492 DTGTGM-SREVQSQIFEPFFTTKGKGTGLGLSTVYGIVKQSKGNIWVYSEPGKGTTFKIY 550

Query: 213 LEK 215
           L +
Sbjct: 551 LPR 553


>gi|119718536|ref|YP_925501.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119539197|gb|ABL83814.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 600

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 29/231 (12%)

Query: 12  MDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
            +L AL      L + + H++ +P+ ++   LE+L+         +    +      R+ 
Sbjct: 367 EELQALDSYKGQLIATVAHELKNPLTSVMGHLEMLESSPDLTGTTRTSLNAMDRGARRMV 426

Query: 66  FMR------------LAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLS 112
            +                     VD    + D+  +I          V V      +   
Sbjct: 427 RVIEDLLLLSKVGDPDDPLIAAPVDLARIVDDVVDLITMPAEQKHLEVTVELPAGPVFAL 486

Query: 113 RERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +     ++  NL   A    P  G V I V  +  + + ++   G      +   ++  
Sbjct: 487 GDHDELDRVTANLVSNAVKYTPASGTVRIVVDRAGQDVVLTVADEGIGISEEDLL-RLGT 545

Query: 170 GNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               S+           +    V  +   +  RL               L 
Sbjct: 546 EFFRSSNPEAVAQPGTGLGLAIVRRIVERHGGRLEVRSELGRGSTFQVWLP 596


>gi|315195596|gb|EFU25983.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           aureus subsp. aureus CGS00]
          Length = 554

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
              +L     + + H++ +PI +I    E L +    D       + +I   S      +
Sbjct: 326 QLENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDAESLDMFLNIILKESNRIESLV 385

Query: 65  KFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +               Y    D    + D      +   +    ++           +
Sbjct: 386 TDLLDLSHIEQHTELDTDYMNLSDLTRRIIDNMMTQANQKNISIHTEIEKDVIVKAQESK 445

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            A+++ NL   A       G + + V       IF ++  G   +  E   +I +     
Sbjct: 446 IAQVITNLLTNAINYSYEDGDINVRVYRDDFRVIFEVQDFGIGIKL-EDQQRIFERFYRV 504

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +              +L+
Sbjct: 505 DKARSRDSGGTGLGLSITKHIVKAHQGNIEVNSQVGKGSTFKVILK 550


>gi|307717858|ref|YP_003873390.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
 gi|306531583|gb|ADN01117.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
           6192]
          Length = 751

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 61/237 (25%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +      L  + + H++ +P+  I    ELL   G+  E+++  R    +  
Sbjct: 353 AKEEAERANRAKSAFL--ATMSHELRTPLNGIIGMSELLMSSGLSGELVEYARTIQTAGE 410

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
                                      D    L  + + +           V        
Sbjct: 411 NLLALINDILDISQLESGKLKVERRPCDLKAVLLHVYKTLYPQTIHKNLRFVLEVASEIP 470

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE 162
              I      +++L NL   A     RG  V     + +    E +F ++  G      E
Sbjct: 471 AVVISDEARLSQVLFNLVGNAIKFTSRGEVVLRVWMEEEEGRAELVFQVRDTGIGIPREE 530

Query: 163 ---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +           +       L      R+  E  +      +  + 
Sbjct: 531 LPRVFERFHQVDQGVTRRFQGSGLGLSIAKDLVELMGGRIDVESEEGKGSCFTVRIP 587


>gi|258514653|ref|YP_003190875.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778358|gb|ACV62252.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 481

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 68/244 (27%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLD-----EVG 44
           +A+ I   L  ++                 +   H++ +P+  I  ++ELL      E  
Sbjct: 231 LAETINAMLERLNFAYQKLDQSYRSQKRFLADASHELRTPLTIIRGNIELLQQMGDAEPE 290

Query: 45  IEDEVMQLIRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDF 93
           I  E +  I   S      ++ +                 +        +   E++    
Sbjct: 291 IRTEALADISEESRRMSWLVEDLLSLARADAGQKMSEELVSLRELLADVIHRAEKLAGPV 350

Query: 94  IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
                 + VS            AK++L L   A      GG V +  + +  E   ++  
Sbjct: 351 NLEATNIFVSEDNYVYGNKEYLAKLILILLDNAFKYTEPGGSVLLKTELADKEACIAVID 410

Query: 154 NGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            G         + F +    +         +       +A ++  R+  +         +
Sbjct: 411 TGTGIAEENLEQIFERFYRIDQSRGSRGTGLGLSIARWIAEQHDARIEVKSTLGQGSEFT 470

Query: 211 ALLE 214
             L 
Sbjct: 471 VRLP 474


>gi|229089712|ref|ZP_04220973.1| hypothetical protein bcere0021_5560 [Bacillus cereus Rock3-42]
 gi|228693611|gb|EEL47313.1| hypothetical protein bcere0021_5560 [Bacillus cereus Rock3-42]
          Length = 461

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITMEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454


>gi|229918207|ref|YP_002886853.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469636|gb|ACQ71408.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 852

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           ++I     +  L +   S I H++ +P+ +I+   EL+ +       + + ++ I   + 
Sbjct: 607 RDITSETEAERLKSEFISTISHELRTPLSSIYGFTELMVKKQLPNEKQAKYLETIHSETE 666

Query: 59  SAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                                     +D    + D+    E      +   ++      +
Sbjct: 667 RLTHLVNDFLDVQRMESGSQMYDREQLDIEPVVRDMLTFYEASSLKHEFELIADDARPYE 726

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           L  +     +++ NL   A    PRGGK+T+ +   +      +K  G      +   ++
Sbjct: 727 LFVDCQKFKQLMSNLLSNAVKYSPRGGKITVELAHHEQIVSIKVKDEGIGI-PSDALDRL 785

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D            I    +       +   +  ++  E I          + 
Sbjct: 786 FDKFYRVDNSDSREIGGTGLGLPICQEIVRGHNGQIHVESIQHEGSTFIVEIP 838


>gi|171780120|ref|ZP_02921024.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281468|gb|EDT46903.1| hypothetical protein STRINF_01908 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 450

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRIIRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +          +              D  +           +   +  + I +  +    
Sbjct: 271 IDNQTVQLEVEMTNFTAFMTSILNRFDQIKSQHTVAGKQYEIVRDYPIKSIWVEIDPDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            ++L N+   A    P GGK+T+S++ ++ + I S+   G      +    F +    + 
Sbjct: 331 TQVLDNILNNAIKYSPDGGKITVSMKTTETQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 391 ARSRAQGGSGLGLAIAKEIVKQHKGFIWAQSTYGKGSTFTIVLP 434


>gi|118476336|ref|YP_893487.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118415561|gb|ABK83980.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 463

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGQGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFTISLP 454


>gi|329733745|gb|EGG70071.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU045]
          Length = 239

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    D  + +I   S    
Sbjct: 10  NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 69

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +  I + D  Q       +  + ++         
Sbjct: 70  SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVIIEAH 129

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             + A+++ NL   A        KV + V  + N+    ++  G      +    F +  
Sbjct: 130 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 189

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+  +       +   L
Sbjct: 190 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVL 235


>gi|218248275|ref|YP_002373646.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218168753|gb|ACK67490.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 491

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 70/203 (34%), Gaps = 11/203 (5%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           H++ +PI  I   LEL+ D+   + E + L+          +  + L           + 
Sbjct: 288 HELRTPITIIRGHLELMGDDPQDQQETITLVLDELDRMARLVDDLSLLAKAERPDFLQLE 347

Query: 83  LGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           + DI    E+         +    ++    G+ +   +   + ++NL   A        +
Sbjct: 348 MIDISDFTEELYLKAIGLKSRHWLLENKAKGQLMIDRQRITQAIMNLAQNASQHTRESDQ 407

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
           +TI   +  +     +K  G      +    F + V  NV S+ +   +    V  +A  
Sbjct: 408 ITIGSTEDNHFIRLWVKDTGQGINKQDQQRIFNRFVRLNVRSSSEGSGLGLSIVKAIAEA 467

Query: 193 NKIRLLPEIIDDHNVVLSALLEK 215
           +  R+          + + +L K
Sbjct: 468 HGGRVELISEIGEGSIFTIILPK 490


>gi|153832326|ref|ZP_01984993.1| sensor histidine kinase [Vibrio harveyi HY01]
 gi|148871355|gb|EDL70218.1| sensor histidine kinase [Vibrio harveyi HY01]
          Length = 659

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++EL+     +E     E +  I
Sbjct: 413 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELIQFELGEEASRVQEEIDAI 472

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       ++    +  
Sbjct: 473 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDIEFVTDLQA 532

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL M    ++   GK+T+  +D   +         +   G    
Sbjct: 533 HTSVEINRHHLLQILVNLQMNGIHAMDGKGKLTVVSEDWIEDSELKGAAIHVTDEGCGI- 591

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE  ++I      +  D   +       +  +    L  E         S  L K
Sbjct: 592 KPENLSRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 647


>gi|148656158|ref|YP_001276363.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148568268|gb|ABQ90413.1| GAF sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 1247

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 62/234 (26%), Gaps = 19/234 (8%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
            + +          L AL  L +   H++ +P+  I    +L  +  I   +   +     
Sbjct: 872  LRRLEEQVRQHEKLAALGRLVAGAAHELNNPLAVILGLSQLQMDEDIPPSIRADLEQIER 931

Query: 57   -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                 +        F +        +D  + + D  Q +   IA  + +        +  
Sbjct: 932  AARRAAAIVHQLRAFGQPRTLEPVPIDLSLVIDDTLQRLASQIAAGQVIVTVDLPPDLPN 991

Query: 112  S----RERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLARFPE 162
                  +  +++ N+ + A  +L                  +   + +++  G       
Sbjct: 992  VLGELHQIEQVVFNIALNAIQALASRLPDEPRHLRFSARAEQESVVLAIEDTGPGIAPEH 1051

Query: 163  KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +     +    V  +  +++  +  E            L +
Sbjct: 1052 LSRVFEPFFTTRDVGQGMGMGLAVVYSIVQQHRGEVWVESRQGVGTTFYVRLPR 1105


>gi|27468286|ref|NP_764923.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251811086|ref|ZP_04825559.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282875887|ref|ZP_06284754.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|293366361|ref|ZP_06613040.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315832|gb|AAO04967.1|AE016748_201 alkaline phosphatase synthesis sensor protein [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805383|gb|EES58040.1| possible histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294912|gb|EFA87439.1| sensor histidine kinase/response regulator [Staphylococcus
           epidermidis SK135]
 gi|291319486|gb|EFE59853.1| sensor histidine kinase PhoR [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329737291|gb|EGG73545.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Staphylococcus epidermidis VCU028]
          Length = 565

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    D  + +I   S    
Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +  I + D  Q       +  + ++         
Sbjct: 396 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVIIEAH 455

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             + A+++ NL   A        KV + V  + N+    ++  G      +    F +  
Sbjct: 456 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 515

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+  +       +   L
Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIDVKSAPGKGSIFKVL 561


>gi|118578878|ref|YP_900128.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter propionicus DSM 2379]
 gi|118501588|gb|ABK98070.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter propionicus DSM 2379]
          Length = 412

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 73/227 (32%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + K       +  L A+  L + + HDI +P+ +I    +L+ +      ++E +  I  
Sbjct: 177 LQKAHSEIAQTEKLAAMGYLAAGMAHDIRNPLNSISLFTQLMRQNSIDPDQEEYLGKIIK 236

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   ++ +      + +V             L      IE      +R        
Sbjct: 237 EIERIDAIIRKLLNMSSRSRNVTSDVRIDRVIDTALEVFAPQIETGKIRLERRYELTPPP 296

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               + E  ++  NLF+ A   +P GG++ + +   ++  +  ++ +G          +I
Sbjct: 297 IKADAAELEQVFTNLFLNALDEMPGGGRLGVGIAVEEDMVVVRVEDSGKGIPEHALP-RI 355

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +    V  +A      +  E       V+     
Sbjct: 356 FDPFFTTKPRGTGVGLPVVKRIARLCGGSVRVERSSREGTVVRLEFP 402


>gi|295706849|ref|YP_003599924.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
 gi|294804508|gb|ADF41574.1| two-component sensor histidine kinase PhoR [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 69/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L     ++  +  + + +I   S      ++ +     
Sbjct: 366 FVANVSHELKTPITSIKGFSETLLDGAMEDPQLRQQFLSIILTESQRMESLIQDLLDLSK 425

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVS---WTGEKIDLSRERAKILL 120
              +       SVD    L ++   +       +  + +            S+   ++ +
Sbjct: 426 VEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAWIDGDSQRLMQVFV 485

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A      GG V +S+++ +      ++  G      E   +I +           
Sbjct: 486 NLIGNALMYTMPGGTVHVSLEEEEETITVHVQDTGIGIDSDEIS-RIFERFYRVDKARSR 544

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  L   +K  +  +   +     S  L K
Sbjct: 545 NSGGTGLGLAIVKHLVEAHKGEIEVKSEVNKGTTFSVKLHK 585


>gi|269963053|ref|ZP_06177389.1| sensor histidine kinase [Vibrio harveyi 1DA3]
 gi|269832185|gb|EEZ86308.1| sensor histidine kinase [Vibrio harveyi 1DA3]
          Length = 680

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++EL+     +E     E +  I
Sbjct: 434 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELIQFELGEEASRVQEEIDAI 493

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       ++    +  
Sbjct: 494 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDIEFVTDLQA 553

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL M    ++   GK+T+  +D   +         +   G    
Sbjct: 554 HTSVEINRHHLLQILVNLQMNGIHAMDGKGKLTVVSEDWIEDGELKGAAIHVTDEGCGI- 612

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE  ++I      +  D   +       +  +    L  E         S  L K
Sbjct: 613 KPENLSRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 668


>gi|210613902|ref|ZP_03289966.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787]
 gi|210150927|gb|EEA81935.1| hypothetical protein CLONEX_02179 [Clostridium nexile DSM 1787]
          Length = 248

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 70/220 (31%), Gaps = 15/220 (6%)

Query: 9   LSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
           + SM L     L+ S+I H++ +P+  I+++L+L++    E                   
Sbjct: 1   MQSMQLNKDEQLVISKISHELRNPLTIIYSTLQLIESRHPEARTFDHWHELMQDVEFMSV 60

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGEKIDLSRER 115
            +     +  +              E              ++   ++  +  +I   + +
Sbjct: 61  LLDDLSRFNHAGALNFSTFSFRPFWEYISLSFAASVADTKLEYFSKIDSSINQITGDKTK 120

Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            + + LNL   A  +    G ++++ + SK+  I  ++ NG      E  + I +     
Sbjct: 121 LQEVFLNLLRNAADAASPDGTISMTAEQSKDSIIIQVQDNGCGI-SKEHLSSIFEPFTTY 179

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +       +   +   +  +            L 
Sbjct: 180 KKNGTGLGLSISESIIQAHGGTIEVDSAPQKGSTFRITLP 219


>gi|15615718|ref|NP_244022.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
 gi|10175778|dbj|BAB06875.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus halodurans C-125]
          Length = 589

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 70/216 (32%), Gaps = 23/216 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLK------- 65
             + + H++ +P+ +I    E L +  + D     + + +I   S      +        
Sbjct: 363 FVANVSHELKTPVTSIKGFTETLLDGAMHDEQLRDQFLHIIWKESERLQSLIHDLLELSK 422

Query: 66  ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
               + +L +  T     +  +  + +   +   +D  +    + +         +I +N
Sbjct: 423 IEQNYFQLNWQQTNLFAVVSEVMTLLKGKAEEKGIDISLSAEGSFDLEGDPERLKQIAIN 482

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A      GG++ ++++D  +   F +   G   R  E   +I +            
Sbjct: 483 LVNNAITYTSNGGRIDLALKDHGDVVEFEVNDTGIGIRESEIP-RIFERFYRVDRARSRN 541

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    V  L   ++ ++L E         + 
Sbjct: 542 SGGTGLGLAIVKHLVEAHQGKILVESEFGKGTTFTI 577


>gi|301062897|ref|ZP_07203480.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300443014|gb|EFK07196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 524

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----------DEVGIEDE 48
           +       + S  + A+  L S I H++ +P+  I  +  +L          +   + ++
Sbjct: 280 LESREAVLIQSHKMRAVGTLTSGIAHELNNPLNNITLTAHMLLEDYQSLSDDERKEMAED 339

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSW 104
           ++   + S       L F R +      +D    L D   +  + I              
Sbjct: 340 IVGEAKRSKHIISNLLDFARESGSQLEPLDLKELLRDTINLAANQIKLSGIRIDFQATDN 399

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE 162
                  S++  ++ LNL + A  +  +G ++ +     D  N     +  +G+      
Sbjct: 400 LPRIHGDSQQLRQVFLNLILNAIDASKKGDRIQVMVLPADDPNYVAVKVIDSGSGI-PDH 458

Query: 163 KFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I D    +  +     +       +  ++  R+     +      S  L 
Sbjct: 459 ILGSIFDPFFTTKGEGKGTGLGLSVSQGIVGKHGGRIRATSREGKGSTFSVTLP 512


>gi|256833553|ref|YP_003162280.1| histidine kinase [Jonesia denitrificans DSM 20603]
 gi|256687084|gb|ACV09977.1| histidine kinase [Jonesia denitrificans DSM 20603]
          Length = 469

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 69/230 (30%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIR 54
           + + +   L  ++        L   + H++ +P+  +   LELL+  +        +L+ 
Sbjct: 226 LTRTVNSMLDRVETAISSQRQLLDDVGHELRTPVTIVQGHLELLETTDPQEVHTTRELVL 285

Query: 55  LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    +  +       R  F     VD    + ++    +   A +     +    
Sbjct: 286 DELDRMTGLINDIVLLAKAQRTDFLTPSEVDIDDLMHEVTHKAQPLGAREWVTSATTGVV 345

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
           +    ++  + LL L   A    P   ++ +    +       ++  G      +    F
Sbjct: 346 QSVDRQKITQALLQLADNAVKYSPDNTRIILGASATSTHISLWVQDEGFGIAPEDHKAVF 405

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+  S  D   +    V  +A  +   +           ++  L 
Sbjct: 406 DRFHRGDNASRADGSGLGLSIVQAIATAHGGTVNLSSQPGKGTTVTITLP 455


>gi|189466203|ref|ZP_03014988.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
 gi|189434467|gb|EDV03452.1| hypothetical protein BACINT_02573 [Bacteroides intestinalis DSM
           17393]
          Length = 885

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 49/228 (21%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     ++ E    +E  +   +   +  
Sbjct: 501 AKEKAETSDQLKSAFL--ANMSHEIRTPLNAIIGFSRIIAESENTEERKEYYNIVEANNE 558

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L+               +  +            + D                      
Sbjct: 559 RLLQLINEILDLSKIEAGIVEFSIAPVRLYPLCKEIHDAHVFRCPSDVELIFEPSDEDIR 618

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A      G       Q+     IF +   G      +     
Sbjct: 619 IDSDKNRIFQVISNLIGNAFKFTTHGSISYGYHQE-GENIIFHVTDTGTGIAPEKIGKVF 677

Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +       +       +      +     +  L 
Sbjct: 678 ERFVKANNFAQGTGLGLAICKTIIERLGGTISVTSELEKGTTFTFNLP 725


>gi|224825187|ref|ZP_03698293.1| osmosensitive K+ channel signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
 gi|224602858|gb|EEG09035.1| osmosensitive K+ channel signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
          Length = 890

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    + S  L   L + + HD+ +P+ ++    + L    + D     +  S     
Sbjct: 649 AQDALLAMESDRLRNTLLTTLSHDLRTPLTSLIGVADTLQRDDLADSARHELLQSLQDEA 708

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQV-----------IEDFIAVDKRVQVSWTGEKID 110
            R+  +         + +       +                       +      E   
Sbjct: 709 RRMGSLVGNLLDMARLQAEGVTLKKDWQSIEEVAGSALRQMSIPLARHAIATDLPPELPL 768

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
              +     ++L+NL   A    P G +V +S +        S+  NG      +    F
Sbjct: 769 CEFDALLIERVLVNLLDNAAKYTPPGSEVRLSARVDGRWLAVSVSDNGPGLPPGDPTRLF 828

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+ ES I    +       +   +  ++  E   +     +  L 
Sbjct: 829 DKFTRGHGESAIPGVGLGLALCRTILDAHGGQIRAENRPEGGARFTFRLP 878


>gi|163800931|ref|ZP_02194831.1| sensor histidine kinase [Vibrio sp. AND4]
 gi|159175280|gb|EDP60077.1| sensor histidine kinase [Vibrio sp. AND4]
          Length = 680

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++EL+     DE G   E +  I
Sbjct: 434 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNIELIQFELGDEAGRVQEEIDAI 493

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       ++    +  
Sbjct: 494 HTQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIVDESITLVKTGTKKRDIEFVTDLQA 553

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL M    ++   GK+T+  +D   +         +   G    
Sbjct: 554 RSSVEINRHHLLQILVNLQMNGIHAMDGKGKLTVISEDWIEQGELKGVAIHVTDEGCGI- 612

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             E   +I      +  D   +       +  +    +  E +       S  L K
Sbjct: 613 KAESLGRIFSPFYTTKRDGTGLGLSVSQSILSQTGGEIKAESVWGKGSTFSVYLPK 668


>gi|313683119|ref|YP_004060857.1| hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155979|gb|ADR34657.1| Hpt sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 758

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 67/234 (28%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     +++        S + H+I +P+ AI   + LL +        Q + + S S   
Sbjct: 142 QKEQEAINASKAKEYFLSNMSHEIRTPLNAILGFVSLLRDETTNPRYQQYLDIISNSGEN 201

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTG 106
            L  +     ++        +      I D I+    + V                +   
Sbjct: 202 LLHIINDILDFSKLRSGEFMIDPQPFNIHDEISHTMELFVPGANSKNITLTSFIDPTIAY 261

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           E +  +    +I+ N    A       G + +  +  +     S++  G      +   +
Sbjct: 262 EIVADALRIKQIVGNFLSNAIKFSHHAGAIHVEARCDEGILSLSVRDQGIGIVLAD-QER 320

Query: 167 IVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D   ++            +       LAH     +  E       + +  + 
Sbjct: 321 IFDAFSQAQEGSMKVNGGSGLGLSICKQLAHHMGGVIELESTVGKGSLFTLKIP 374


>gi|294501501|ref|YP_003565201.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
 gi|294351438|gb|ADE71767.1| two-component sensor histidine kinase PhoR [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 69/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L     ++  +  + + +I   S      ++ +     
Sbjct: 366 FVANVSHELKTPITSIKGFSETLLDGAMEDPQLRQQFLSIILTESQRMESLIQDLLDLSK 425

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVS---WTGEKIDLSRERAKILL 120
              +       SVD    L ++   +       +  + +            S+   ++ +
Sbjct: 426 VEQQGFKLSIHSVDLNTLLYEVTTVLSNRATEKEITLTLDTLPEEAWIDGDSQRLMQVFV 485

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A      GG V +S+++ +      ++  G      E   +I +           
Sbjct: 486 NLIGNALMYTMPGGTVHVSLEEEEETITVHVQDTGIGIDSDEIS-RIFERFYRVDKARSR 544

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  L   ++  +  +   +     S  L K
Sbjct: 545 NSGGTGLGLAIVKHLVEAHRGEIEVKSEVNKGTTFSVKLHK 585


>gi|224367709|ref|YP_002601872.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
 gi|223690425|gb|ACN13708.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
          Length = 998

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV-------MQLI 53
            +     ++ ++ + +L   I HD  + + AI  +++L L +  + D         +   
Sbjct: 616 TEQELRKITKLESIGVLAGGIAHDYNNILSAIIGNIQLTLMDSNLTDRTQRFIKQALDAS 675

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112
             +    I  L F +       +   +  + D          +                 
Sbjct: 676 LRAKNLTIQLLTFSKGGRPVKKTASLVRLIRDFVDSTCRASNIACHCSFPDDLWPVEIDR 735

Query: 113 RERAKILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNLAR 159
            +  +++  L   A  ++P                     +  + N    S+K  G    
Sbjct: 736 SQMGQVVQKLIQNACNAMPNGGTIEVSCQNVRSSPTKHPDIAPASNRVEMSIKDTGVGIA 795

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +I D    +      +       +  ++  ++  +         +  L 
Sbjct: 796 EN-LLDKIFDPYFSTNQPGRGLGLAICHSIVTQHNGQISVKSTPGKGSTFTVHLP 849


>gi|162450733|ref|YP_001613100.1| two-component system sensor protein [Sorangium cellulosum 'So ce
           56']
 gi|161161315|emb|CAN92620.1| two-component system sensor protein [Sorangium cellulosum 'So ce
           56']
          Length = 738

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 61/232 (26%), Gaps = 28/232 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAII 62
             + L+  + + + H+I +P+GAI  + +LL +            E + +I         
Sbjct: 480 DRLALLGQMAAGLAHEIRNPLGAIKGAAQLLADPVPEAQIDAASREFLGIILEEVDRLDR 539

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +  +               +  I +     +  +       V+V+       ++ +  +
Sbjct: 540 VVGSVLDLARPAQGSVVPTDVNAIVRRTLQVLSIERRNDQLEVEVTLDPGLPRVAIDPEQ 599

Query: 118 ILLNLFM---VAHASL------------PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +   L      A  ++              G          +     ++  NG       
Sbjct: 600 LRQVLMNLFRNAVQAMKGRGKVVISTRVRFGRGTRPGSGSDEPFVELNVTDNGPGISQK- 658

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I      +      +       +A     R+     +      + +L 
Sbjct: 659 VLANIFLPFFTTKDKGTGLGLSISQRIAQSAGGRIEVRSYEGKGSTFAVILP 710


>gi|222054469|ref|YP_002536831.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221563758|gb|ACM19730.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 501

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 16/222 (7%), Positives = 59/222 (26%), Gaps = 18/222 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR 63
            +  L ++  + + I H+I +P+  I  ++ ++ E          ++  +          
Sbjct: 263 RADRLASVGEMAAGIAHEIKNPLTGIAAAITIIKEDFAPSDSRTTIVDEVLEQIKRLDKT 322

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +  +           +   +            +   + +   ++    +   +  +  +I
Sbjct: 323 VNDLLFFGKPAQPEPAFTDINSTIRKTLKFASQHRGSKNIEKKLELQEDLPPVYVDPKQI 382

Query: 119 LLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              L  +   ++            +   +  ++  +  +K  G      +   +I     
Sbjct: 383 QQVLLNLILNAMQAMHDGGTLTIRSAFEKKEQDWVLIMVKDTGQGI-PAQILEKIFTPFF 441

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       L  ++   L     D         L 
Sbjct: 442 TTKAQGTGLGLAICHKLVSQHNGTLTVSSEDGKGTEFIVSLP 483


>gi|46484678|gb|AAS98248.1| sensor protein [Listonella anguillarum]
          Length = 848

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 62/237 (26%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  I    +LL     + E ++ + +   
Sbjct: 465 KQSRLARQEAEESARIRAEFLAKMSHELRTPLNGILGVSQLLKREISDHEQLEQVNVLCS 524

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102
           S    L  +     ++        + + +  + + I+  + +                 +
Sbjct: 525 SGEHLLAVLNDILDFSKIEQGQFRIQESDFKLVEVISAVESIYRPLCAEKEIEFSLKSNI 584

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         +IL NL   A      G       Q + ++   S+   G   R  +
Sbjct: 585 PPDMMIHSDQVRLNQILFNLLNNATKFTHHGLISIEFQQKNNHQLFISISDTGIGIREQD 644

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                  +    V  L       +  +         S  L 
Sbjct: 645 LALIFEPFTQVESNTTREYGGSGLGLAIVKSLIEMLGGAVNVKSQFGVGTTFSVELP 701


>gi|254479591|ref|ZP_05092901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214034465|gb|EEB75229.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 571

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 73/219 (33%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + H++ +P+  I + +E L     +     + +++I   +      +K + L    
Sbjct: 349 FVANVSHELRTPLATIKSYVETLLYNDVDTEYSKKFLRIIETETDRMTRLVKDLLLLSKM 408

Query: 74  TGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
               +SL                 +  +       V ++ +     ++ ++    ++ +N
Sbjct: 409 DSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVDKDKVEQMAMN 468

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG + IS    +    F++K NG      +   +I +            
Sbjct: 469 IINNAIKYTPEGGVIEISTAYDEEGVTFTVKDNGIGIPKEDLP-RIFERFYRVDKARSRE 527

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    V  +   +K ++  E       V++  L 
Sbjct: 528 LGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLP 566


>gi|20809032|ref|NP_624203.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517703|gb|AAM25807.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 577

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 73/219 (33%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + H++ +P+  I + +E L     +     + +++I   +      +K + L    
Sbjct: 355 FVANVSHELRTPLATIKSYVETLLYNDVDTEYSKKFLRIIETETDRMTRLVKDLLLLSKM 414

Query: 74  TGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
               +SL                 +  +       V ++ +     ++ ++    ++ +N
Sbjct: 415 DSEENSLKLEPCDFNEIVKNVVNSLSIEATKKGHNVILNLSETLQKVNVDKDKVEQMAMN 474

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG + IS    +    F++K NG      +   +I +            
Sbjct: 475 IINNAIKYTPEGGVIEISTAYDEEGVTFTVKDNGIGIPKEDLP-RIFERFYRVDKARSRE 533

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    V  +   +K ++  E       V++  L 
Sbjct: 534 LGGTGLGLSIVKQIVELHKGKVKIESELGKGTVVTVQLP 572


>gi|152974373|ref|YP_001373890.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023125|gb|ABS20895.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 462

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 16/223 (7%), Positives = 53/223 (23%), Gaps = 20/223 (8%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRL 64
              +   + + H++ +P+  +    E+  +   +    +             +       
Sbjct: 233 KERSEFLASVAHELRTPLTYVKGYAEIAQKRTTQPTEREKYLSIIKEEADYITNLVQDLF 292

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAK 117
              ++           I L      I            +   +    +       R   +
Sbjct: 293 ILAQMEKHNFLIEAKRIDLEKFLNRIVTKVNGIYVQKHLTVSLTCPPSLFITLDERRFEQ 352

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++N+   A+        +TI+V    +    S++  G      +               
Sbjct: 353 VIMNILNNAYRHSAEYSVITITVTAYVSHIKISIQDTGEGIPPEDIPHIFERFYRVDKAR 412

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    V  +   +   +      +     +  L +
Sbjct: 413 SRATGGTGLGLAIVKEIVELHDGHITVSSKLNKGTCFTITLPR 455


>gi|319946569|ref|ZP_08020803.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641]
 gi|319746617|gb|EFV98876.1| sensor histidine kinase VicK [Streptococcus australis ATCC 700641]
          Length = 448

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 68/223 (30%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  I + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGAISEPVAPEFVKVSLTETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    + +  +     +
Sbjct: 271 IDNETSQLDVELTNFTAFITFILNRFDKMKSQAGEKKYDIVRDYPISPVWVEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +L N+   A    P GG++ + ++ +  + I S+   G      +   +I D        
Sbjct: 331 VLDNILNNAIKYSPDGGEIRVGMKTTDAQLIISISDEGLGIPKKDLP-RIFDRFYRVDKA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|90413826|ref|ZP_01221813.1| putative sensor histidine kinase [Photobacterium profundum 3TCK]
 gi|90325137|gb|EAS41640.1| putative sensor histidine kinase [Photobacterium profundum 3TCK]
          Length = 681

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     ++S  L AL  L + I H+I +P   I  ++ELL     D+     E +  I
Sbjct: 431 LNQAKIKLVASEKLAALGELTAGIAHEINNPTAVILGNVELLQLELGDDTLRVKEELDAI 490

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSW 104
                      + +       G  D +        V E             V    Q+  
Sbjct: 491 HEQIDRIRNITRSLLQYSRQGGVQDEITWHHVNLIVEESLTLVRSGTKSYDVKVEAQLDA 550

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLA 158
                    +  ++L+NL M    ++   G + +  +D  ++       +  +  +G   
Sbjct: 551 KCCIEANRHQLLQVLINLQMNGVHAMDDKGLLKVKTEDWIDQSGEVLGAVVRVTDHGCGI 610

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E   +I +    +      +       +  E    +  +         S  L
Sbjct: 611 -SKENLKRIFNPFFTTRRSGTGLGLSVSQGIISEIGGEIEVQSELGKGSTFSIYL 664


>gi|315644224|ref|ZP_07897394.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315280599|gb|EFU43888.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 609

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 28/232 (12%)

Query: 10  SSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAI 61
               L A      + + H++ +P+  I +  E L++  +ED+ M      +I+  +   I
Sbjct: 370 EQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGALEDKQMGPRFVGVIQNETGRMI 429

Query: 62  IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                 T  V+ L  + D          +   ++V        
Sbjct: 430 RLVTDLLHLSRLDSKEAALHKEPTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489

Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168
           L R+   ++L NL   A    P GG +T+    ++      S+K  G      +   +I 
Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDL-DRIF 548

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +    +       +   +   +  +   +    ++  L 
Sbjct: 549 ERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLP 600


>gi|310644836|ref|YP_003949595.1| sensory box histidine kinase yycg [Paenibacillus polymyxa SC2]
 gi|309249787|gb|ADO59354.1| Sensory box histidine kinase YycG [Paenibacillus polymyxa SC2]
          Length = 609

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 59/221 (26%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  I +  E LD+  + +  +        R  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTTIRSYAEALDDGAMAEPQLAERFVGVIRNETERMIRLVTDLLHLSR 440

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                                        +++             G+ +    +  ++L 
Sbjct: 441 LDSNEAPLRMQPADVMEMLDEVADRFSFQMKENHIRSGMFVEQGIGKVVIDRDQIDQVLD 500

Query: 121 NLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           NL   A    P G      + ++++     S++  G      +   +I +          
Sbjct: 501 NLMSNALKYTPEGGSIRIEARRNNEGMLAISVQDTGIGIPKKDL-DRIFERFYRVDKARS 559

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +       +   +  ++  E         +  L 
Sbjct: 560 RNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLP 600


>gi|115372967|ref|ZP_01460271.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|310818670|ref|YP_003951028.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370045|gb|EAU68976.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391742|gb|ADO69201.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 956

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           +A+       + +   L     + + H++ +P+ A+   +++L    +          + 
Sbjct: 560 LARESAARQEAQEANRLKDEFLATVSHELRTPLTAMLGWVQMLRTGNLPAGKHARALETV 619

Query: 58  MSAII---------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                   +RL          +    +  +   D   +  +  V
Sbjct: 620 ERNARAQSQLIEDLLDVSRIMSGKLRLDVEPVEVSVVVEHALESVRPAADAKHIRLQAAV 679

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             T   +  ++   +++ NL   A    P+GG+V + V+   +    ++   G+      
Sbjct: 680 DSTSHVMGDAQRLQQVVWNLLSNAVKFTPKGGRVQVFVERRDSSVDITVADTGHGIAAKF 739

Query: 163 KFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                   +  DG+   +     +    V  L   +   +      +      +  L 
Sbjct: 740 LPHVFDRFRQADGSTTRSAGGLGLGLSIVRQLVELHGGTVSAFSEGEGKGATFTVTLP 797


>gi|302341501|ref|YP_003806030.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfarculus baarsii DSM 2075]
 gi|301638114|gb|ADK83436.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfarculus baarsii DSM 2075]
          Length = 395

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 77/252 (30%), Gaps = 38/252 (15%)

Query: 1   MAKNICFNLS-----------SMDLVAL--LCSRICHDIISPIGAI-------------- 33
           M +                  +  L +L  + S + H+I +P+  I              
Sbjct: 128 MRQEQELEAQFRQEMQRRMNVAERLASLGTMASGVAHEINNPLAIISEAAGWLKGRLAKD 187

Query: 34  HNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI- 90
            ++ + L +       +++  +  +S      L F R         D +    D+  +  
Sbjct: 188 QSASDELRKAGELAISKILSSVERASRITHQLLDFARKNDWEIQEFDIVELASDVIDLTA 247

Query: 91  EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHAS--LPRGGKVTISVQDSKN 145
                 + +V++      I +  +  ++   L      A  +     GG+  +SV  + +
Sbjct: 248 NAARDANCKVELHAKSRPIKVWSDPYQLRQVLINLLTNACQAVGTQGGGEAWLSVDSAGD 307

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIID 203
           + + ++K  G      E  T++ +    +        +       +  +   R+  +   
Sbjct: 308 DVLIAVKDTGPGI-PKENLTRVFEPFFSTKPPGKGTGLGLSVSKGIVEKLGGRIEVDSRL 366

Query: 204 DHNVVLSALLEK 215
               V    L +
Sbjct: 367 GSGAVFRVSLPR 378


>gi|261410065|ref|YP_003246306.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261286528|gb|ACX68499.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 609

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 28/232 (12%)

Query: 10  SSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAI 61
               L A      + + H++ +P+  I +  E L++  +ED+ M      +I+  +   I
Sbjct: 370 EQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGALEDKQMGPRFVGVIQNETGRMI 429

Query: 62  IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                 T  V+ L  + D          +   ++V        
Sbjct: 430 RLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489

Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168
           L R+   ++L NL   A    P GG +T+    ++      S+K  G      +   +I 
Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDL-DRIF 548

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +    +       +   +   +  +   +    ++  L 
Sbjct: 549 ERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLP 600


>gi|322389964|ref|ZP_08063504.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903]
 gi|321143400|gb|EFX38838.1| sensor histidine kinase VicK [Streptococcus parasanguinis ATCC 903]
          Length = 450

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 28/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115
           +    +     L         I +     K                          + + 
Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +++ N+   A    P GGK+ + ++ +  + I S+   G      +   +I D      
Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMKTTDAQLIISISDEGLGIPKKDLP-RIFDRFYRVD 389

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +  ++K  +  +         + +L 
Sbjct: 390 KARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|189423659|ref|YP_001950836.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189419918|gb|ACD94316.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 581

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKF----- 66
             + + H++ +P+  I    E L +             +++I   +      +       
Sbjct: 360 FVANVSHELRTPVAVIKGYGETLLDGALEESPERSRRFVEIIVSHAERLTNLINDILTLS 419

Query: 67  ---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKIL 119
               R A      +D    +   + ++ED                  + +    +  ++L
Sbjct: 420 KLEARDAALTLHPLDLCGTIRKAQMLMEDHARSKGIRIAAECPDGMPKVLADQGQLEQVL 479

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           LNL   A    P GG VT++ +  +   + ++   G      +   +I +          
Sbjct: 480 LNLLDNAIKYTPDGGDVTVAARLEQERVVVAVSDTGIGIPARDLP-RIFERFYRVDEGRS 538

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    V  +   +   +            +  L 
Sbjct: 539 REQGGTGLGLAIVKHIVQLHGGEVQVASEAGKGSTFTVTLP 579


>gi|332712356|ref|ZP_08432283.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348830|gb|EGJ28443.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 965

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 65/236 (27%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMS 59
           +N+   L +  L +   S I H++ +P+ AI    +LL    +  +  +   ++     +
Sbjct: 692 QNLQL-LEAARLKSQFVSTISHELRTPMNAIIGFSQLLLRQRQGSLTHQQADIMERIVNN 750

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVSWTGE 107
           A   L  ++     +      + L              I +        D  + +    +
Sbjct: 751 AQHLLTLIKDMIDLSKIEAVCLELTLESLHLDRLIKETINEFRCLAAQKDLGLYIQTNLK 810

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +     +IL+NL          G    +  + S +  + +++  G      +  
Sbjct: 811 NPIVINDSLRLRQILVNLVSNGIKFTEMGRVEVVVKEISTDWLMLTVRDTGIGIAENDLE 870

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +                +       L    +  +  E              +
Sbjct: 871 HIFEEFQQIDQTTTRKYSGTGLGLAITESLVKLMQGTITVESKLGKGSTFHVKFPR 926


>gi|329925067|ref|ZP_08280011.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328940186|gb|EGG36518.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 609

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 28/232 (12%)

Query: 10  SSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAI 61
               L A      + + H++ +P+  I +  E L++  +ED+ M      +I+  +   I
Sbjct: 370 EQEKLEASRREFVANVSHELRTPLTTIKSYTEALEDGALEDKQMGPRFVGVIQNETGRMI 429

Query: 62  IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                 T  V+ L  + D          +   ++V        
Sbjct: 430 RLVTDLLHLSRLDSKEAALHKERTDIVEMLEDVEDRFSFQMKQKHIRTIIEVKPGVSTAM 489

Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168
           L R+   ++L NL   A    P GG +T+    ++      S+K  G      +   +I 
Sbjct: 490 LDRDGIDQVLDNLISNALKYTPDGGTITMDASITEEGMLSLSVKDTGIGIPKKDL-DRIF 548

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +    +       +   +   +  +   +    ++  L 
Sbjct: 549 ERFYRVDKARTRNLGGTGLGLSIAREIVRAHGGFITLQSELEKGTTVTFTLP 600


>gi|253569669|ref|ZP_04847078.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840050|gb|EES68132.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 635

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 61/228 (26%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK    +   M   ++  + + H+I +P+ AI    E++   +    + E +++I+ +S 
Sbjct: 271 AKRRAEDADRMK--SVFLANMSHEIRTPLNAIVGFSEIMVLTENEEEKHEYLEIIQKNSN 328

Query: 59  SAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +               + F        +  +  + Q+        K V+      
Sbjct: 329 LLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLKMKLNVDLKVVRPQGEFW 388

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L N    A  +   G       Q+  +     +   G      +     
Sbjct: 389 TSTDRNRVMQVLFNFLSNAIKNTETGSITLGLKQE-GDWLKLFVSDTGCGIPEEKLPQIF 447

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +       +      R+            +  L 
Sbjct: 448 TRFEKLNDFVQGTGLGLSICKSIVERLGGRIEVSSELGQGSTFALYLP 495


>gi|229541285|ref|ZP_04430345.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325705|gb|EEN91380.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 534

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 71/227 (31%), Gaps = 15/227 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +  +  ++++V  L + I H+I +P+ A+   ++LL     E+E      + +   
Sbjct: 284 MQEQLRKS-DTLNIVGELAAGIAHEIRNPMTALKGFIQLLQNSMKEEEHSLYFNVITSEL 342

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEKIDLS 112
                 +                 D+ +++ D I          + ++   +     D+ 
Sbjct: 343 ARIEAIITDFLVLAKPQAIQFQNHDVRKIMRDTIGLLNAQALMHNIQISCHFDEGLPDVY 402

Query: 113 RERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            E  +I      +   ++          + I  +  K     S++  G      +K  ++
Sbjct: 403 CEGNQIKQVFINIIKNAIEVMPDGGKIDIAICYEKEKGLVHTSIRDEGEGI-PDDKIEKL 461

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E+K  +  +            L 
Sbjct: 462 GEPFYTTKERGTGLGLMISYKIIKEHKGFIQVQSKVREGTTFHIFLP 508


>gi|29349960|ref|NP_813463.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341871|gb|AAO79657.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 635

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 61/228 (26%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK    +   M   ++  + + H+I +P+ AI    E++   +    + E +++I+ +S 
Sbjct: 271 AKRRAEDADRMK--SVFLANMSHEIRTPLNAIVGFSEIMALTENEEEKHEYLEIIQKNSN 328

Query: 59  SAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +               + F        +  +  + Q+        K V+      
Sbjct: 329 LLLQLINDILDLSRIESGKSEMHFQQVEIAGLVDEVEKVHQLKMKLNVDLKVVRPQGEFW 388

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L N    A  +   G       Q+  +     +   G      +     
Sbjct: 389 TSTDRNRVMQVLFNFLSNAIKNTETGSITLGLKQE-GDWLKLFVSDTGCGIPEEKLPQIF 447

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +       +      R+            +  L 
Sbjct: 448 TRFEKLNDFVQGTGLGLSICKSIVERLGGRIEVSSELGQGSTFALYLP 495


>gi|229113506|ref|ZP_04242955.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
 gi|228669924|gb|EEL25318.1| hypothetical protein bcere0018_56770 [Bacillus cereus Rock1-15]
          Length = 387

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A +I      +           + + H++ +P+  I    +++ +  +  +  +     
Sbjct: 149 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQDQKHYLSI 208

Query: 57  SMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                              K  +  F       +L  L             +K + + ++
Sbjct: 209 IKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFS 268

Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +        +   +++LNL   A++      K+ + V D K      +K  G      
Sbjct: 269 CPEDLVLLLDEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEK 328

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                       +    V  +   ++  +  +    H  + + LL+K
Sbjct: 329 DLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILLKK 387


>gi|229125248|ref|ZP_04254354.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
 gi|228658208|gb|EEL13942.1| hypothetical protein bcere0016_54890 [Bacillus cereus 95/8201]
          Length = 387

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A +I      +           + + H++ +P+  I    +++ +  +  +  +     
Sbjct: 149 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQDQKHYLSI 208

Query: 57  SMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                              K  +  F       +L  L             +K + + ++
Sbjct: 209 IKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFS 268

Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +        +   +++LNL   A++      K+ + V D K      +K  G      
Sbjct: 269 CPEDLVLLLDEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEK 328

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                       +    V  +   ++  +  +    H  + + LL+K
Sbjct: 329 DLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILLKK 387


>gi|44004552|ref|NP_982221.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|190015080|ref|YP_001966749.1| sensor histidine kinase [Bacillus cereus]
 gi|190015346|ref|YP_001967073.1| sensor histidine kinase [Bacillus cereus]
 gi|218848250|ref|YP_002455135.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|229164673|ref|ZP_04292537.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296506625|ref|YP_003667859.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
 gi|42741618|gb|AAS45063.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|116584756|gb|ABK00871.1| sensor histidine kinase [Bacillus cereus]
 gi|116585027|gb|ABK01136.1| sensor histidine kinase [Bacillus cereus]
 gi|218540301|gb|ACK92697.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|228618753|gb|EEK75715.1| hypothetical protein bcere0009_53880 [Bacillus cereus R309803]
 gi|296327212|gb|ADH10139.1| sensor histidine kinase [Bacillus thuringiensis BMB171]
          Length = 455

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A +I      +           + + H++ +P+  I    +++ +  +  +  +     
Sbjct: 217 LAHSIQKLADDLNYMKKERGEFLASVAHELRTPLTYIRGYADIILKTKMSTQDQKHYLSI 276

Query: 57  SMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                              K  +  F       +L  L             +K + + ++
Sbjct: 277 IKEEADHVTGLVQDLFELAKMEKHNFIINTKQTNLYDLLKHIVAKIQPAYTEKNIHIIFS 336

Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +        +   +++LNL   A++      K+ + V D K      +K  G      
Sbjct: 337 CPEDLVLLLDEQRFEQVILNLLNNAYSHSEVNSKIFVMVTDKKESIQIIVKDEGEGIPEK 396

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                       +    V  +   ++  +  +    H  + + LL+K
Sbjct: 397 DLPHIFERFYRVDKSRTRATGGSGLGLAIVKEIIELHRGSISVKSELGHGTIFTILLKK 455


>gi|255101001|ref|ZP_05329978.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
          Length = 900

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +N    +    L + L   + HD+ +P+  I  ++                ELL  V  
Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + + +  +  + +S     +       ++  V+ +I     +       A+         
Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L+NL   +        K+ I+V +  +   F +  NG      E   
Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGPGI-SKELKK 841

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I D                 +       +   +K  ++ E   D        L K
Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVENNKDKGSTFKFSLPK 897


>gi|254975464|ref|ZP_05271936.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255092851|ref|ZP_05322329.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255314594|ref|ZP_05356177.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255517268|ref|ZP_05384944.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255650374|ref|ZP_05397276.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260683488|ref|YP_003214773.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260687084|ref|YP_003218217.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|260209651|emb|CBA63346.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260213100|emb|CBE04496.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 900

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +N    +    L + L   + HD+ +P+  I  ++                ELL  V  
Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + + +  +  + +S     +       ++  V+ +I     +       A+         
Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L+NL   +        K+ I+V +  +   F +  NG      E   
Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGPGI-SKELKK 841

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I D                 +       +   +K  ++ E   D        L K
Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVENNKDKGSTFKFSLPK 897


>gi|126699437|ref|YP_001088334.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|115250874|emb|CAJ68699.1| Two-component sensor histidine kinase KdpD [Clostridium difficile]
          Length = 900

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +N    +    L + L   + HD+ +P+  I  ++                ELL  V  
Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + + +  +  + +S     +       ++  V+ +I     +       A+         
Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L+NL   +        K+ I+V +  +   F +  NG      E   
Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGPGI-SKELKK 841

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I D                 +       +   +K  ++ E   D        L K
Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVENNKDKGSTFKFSLPK 897


>gi|91203465|emb|CAJ71118.1| similar to two-component sensor histidine kinase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 384

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 71/231 (30%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       L +  + +  LL S + H++ +P+  I    ELL E   +++ +  I+  S 
Sbjct: 153 LKSLQNQLLQAEKMASIGLLASSLAHELDTPLATISGYCELLLEEVHDEKALGKIKTISD 212

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKID 110
                 K  R    ++   DS      I  +I                 ++ ++  +   
Sbjct: 213 QIARCQKATRNLLIFSRKSDSEKKEYHINTLITTILALVEHRLKIHKINIRRAFDKQLPP 272

Query: 111 ---LSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +  +++LNL   +  +LP      +   + +++       + NG          
Sbjct: 273 LLVEGNQIQQVILNLVNNSVDALPNGGDLFIKTRMNNAEKSVEIVFEDNGTGIPEKY-HK 331

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +        +       +   +   +  +   D        L 
Sbjct: 332 RIFEPFFTTKEQGKGTGLGLSICKDIISAHNGTIRLDNNTDKGTKFIISLP 382


>gi|148265666|ref|YP_001232372.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146399166|gb|ABQ27799.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 522

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 60/226 (26%), Gaps = 16/226 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSM 58
               + S  L +L  L + I H+I +P+  I     L+ +    D      ++++   + 
Sbjct: 290 QAQLIRSEKLASLGELVAGIAHEINNPLTGILVFSSLVSKDPKLDPSLKDDLEIVVQQTE 349

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKIDLSR 113
                +K +      +        L  I  +         +  +  +   ++ +  D+  
Sbjct: 350 RCSQIVKGLLDFSRESVPQKKFSSLNRIMDMSLSLIERQVLFQNITITKDYSTDLPDMLL 409

Query: 114 ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  ++      +   +          ++   +         S+   G             
Sbjct: 410 DPNQVEQVFVNMILNAGQSMLDGGDLQICTGMTTDGCHEFVSISDTGCGISEENLVKIFD 469

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     +       + + +   +  E         + +L 
Sbjct: 470 PFFTTKSTKGTGLGLSVSYGIINNHSGTIEVESKVGSGTTFTIMLP 515


>gi|317127327|ref|YP_004093609.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315472275|gb|ADU28878.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 459

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 70/224 (31%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            K     L S  L A+  L + I H+I +P+ +I   ++L+   +   + E   ++    
Sbjct: 231 KKTEKLLLESEKLTAVGQLAASIAHEIRNPLTSIKGFIQLMKTSDDISKAEYFDILADEV 290

Query: 58  MSAI-------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                      +  K     F Y      +  +  +         VD  +++    +   
Sbjct: 291 TRIELITGELLMLAKPQAHDFHYADISVIIEDVVTLLSSQALMNHVDFNMKIESLPKIKC 350

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +  +  +  +N+      ++P GG + I+V ++    +  +K  G          +I   
Sbjct: 351 IENQLKQAFINVIKNGIEAMPHGGMIYITVNEADTNIVIEIKDEGLGIPKT-ILNKIGSP 409

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +     I +   +         +     +   L 
Sbjct: 410 FYTTKEKGTGLGMMTTIKIIQTHNGTFTISNTNKDGTTIRITLP 453


>gi|170724459|ref|YP_001758485.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella woodyi ATCC 51908]
 gi|169809806|gb|ACA84390.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella woodyi ATCC 51908]
          Length = 705

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 75/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48
           + +     +++  L AL  L + I H+I +P   I  ++ELL           E  IE  
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLKFELGQNADCVEEEIELV 511

Query: 49  VMQLIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           + Q+ R+S++   +                     +  +  + +       V    +++ 
Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQLTPIIEEMLVLVRHSIKEQKVVLTQELNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++   G++ I   D             ++  G    
Sbjct: 572 SYPIEVNRPQLLQVLINLVVNAAHAMNEDGRIWIRTYDWVVKDEPIGVKIEVEDEGKGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+  +I D    +  D   +       +       +          + +  L
Sbjct: 631 PKEQLNRIFDPFYTTRADGTGLGLSLSYGIIKRIGGTIEVSSTVGKGTLFTIGL 684


>gi|301053514|ref|YP_003791725.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375683|gb|ADK04587.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 357

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLPEEKREHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++        ++ +G      +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSGGTITIQLKEYGTLVEVRIRDSGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  + +    +  + K
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFTVCIPK 353


>gi|94971483|ref|YP_593531.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94553533|gb|ABF43457.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 598

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 74/231 (32%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           +       + S  L ++  L +   H+I +P+ AI    +LL      +        ++ 
Sbjct: 361 LKSVKNQLVQSEKLASMGRLLAGAAHEINNPLTAILGYSDLLTSSISLDPQTRSMAEKIG 420

Query: 54  RLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           + +          LKF +       S D  + + +  ++         +V+V+   +   
Sbjct: 421 QQARRTKTLVEDLLKFSQETPTQRSSNDVQVLVLNAIKLAGLEAGKSVKVEVTAPDKLPP 480

Query: 111 LSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFT 165
           ++ +  +   + ++L   A  ++       + +      +   ++   +G   + P+   
Sbjct: 481 VAVDPGQILQVFVHLIRNAADAMSESVVRVLHISTRAGSSQVQVEFADSGPGVKDPDL-- 538

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D    +        +       +  ++  ++          + +  L 
Sbjct: 539 -VFDPFYTTKSPGKGTGLGLSACYGIVQKHGGQITCANRPQGGAIFTVTLP 588


>gi|57867173|ref|YP_188828.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
 gi|57637831|gb|AAW54619.1| sensory box histidine kinase PhoR [Staphylococcus epidermidis
           RP62A]
          Length = 565

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    D  + +I   S    
Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +  I + D  Q       +  + ++         
Sbjct: 396 SLVTDLLDLSHIEQQKELEINYMNLSELAINIIDNLQTQAYNKRIKIQSEIEKDVIIEAH 455

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             + A+++ NL   A        KV + V  + N+    ++  G      +    F +  
Sbjct: 456 ENKIAQVITNLLSNAINYSSEDNKVIVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFY 515

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+  +       +   L
Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRIGVKSAPGKGSIFKVL 561


>gi|157692028|ref|YP_001486490.1| sporulation sensor histidine kinase E [Bacillus pumilus SAFR-032]
 gi|157680786|gb|ABV61930.1| sporulation sensor histidine kinase E [Bacillus pumilus SAFR-032]
          Length = 731

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 75/227 (33%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49
            K +   +   D   +V  L + I H+I +P+ A+   ++LL      +           
Sbjct: 496 RKELEERVRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGNIEGEYSLYFNVITSE 555

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-K 108
           ++ I       +I  K   + +     V  +    D+     +   V   + V       
Sbjct: 556 LKRIESIITEFLILAKPQAIVYEEKNVVQIVKDTMDLLHAQANLGNVQMHLNVMDEIPLI 615

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A   +PR G V +++Q       + SL+  G      +K  ++
Sbjct: 616 YCEQNQLKQVFINILKNAIEVMPRKGNVYVTIQRKGEEHIVISLRDEGCGM-AEDKLRRL 674

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++  +  E  +    V    L 
Sbjct: 675 GEPFYTTKERGTGLGLMVSYKIIEEHQGTIEVESEEGVGTVFHLTLP 721


>gi|328951885|ref|YP_004369219.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452209|gb|AEB08038.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1310

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 66/232 (28%), Gaps = 20/232 (8%)

Query: 2    AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
             +     L S  L +L  L   I HD  + + AI  ++ L      E E +     + + 
Sbjct: 934  RRAQEDRLRSSKLESLATLAGGIAHDFNNILTAILGNISLAKLERDEGERLTDAERACLQ 993

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRE 114
            A      +         +  L+ + ++ +    F     +V   +            + +
Sbjct: 994  AKALAHQLLTFAKGGSPIMELLSVANLIRETASFACRGSQVVCEYDLPENLWMVHADAGQ 1053

Query: 115  RAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFPE 162
              ++  NL + A  ++P                 +    +       +++  G      E
Sbjct: 1054 LGQVFQNLVINAVQAMPMGGAVKILGENIIVEIGSNLPLNPGKYVKITVQDRGMGI-PTE 1112

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T+I D    +      +    V  +   +K  +  E            L 
Sbjct: 1113 YLTRIFDPYFTTKQMGSGLGLATVYSIIKAHKGHIAVESTLGLGTAFEVYLP 1164


>gi|295703363|ref|YP_003596438.1| two-component sensor histidine kinase KinE [Bacillus megaterium DSM
           319]
 gi|294801022|gb|ADF38088.1| two-component sensor histidine kinase KinE [Bacillus megaterium DSM
           319]
          Length = 726

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 79/225 (35%), Gaps = 13/225 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQ 51
           M + I  +  ++ +V  L + I H+I +P+ A+   ++LL+    ED           ++
Sbjct: 503 MQEQIRKS-DTLQVVGQLAAGIAHEIRNPMTALKGFVQLLESSIQEDHSLYFDIIKSELK 561

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKID 110
            I       ++  K   + F        +    D+         +   + VS        
Sbjct: 562 RIETIITEFLVLAKPQAVKFEKKNLAAVVKETIDLLNAQALLENIQFELSVSPQLPMVYC 621

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVD 169
              +  ++L+N+   A      GG++ + V  ++ +    S++  G+     E+  ++ +
Sbjct: 622 EPNQIKQVLINVIKNAIEVTSNGGRIIVEVYSTEPHYVTVSIRDQGDGM-PEERIKRLGE 680

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  E+K R+  E           +L 
Sbjct: 681 PFYTTKEKGTGLGLMVSYKIIEEHKGRIEVESKIGEGTAFHVILP 725


>gi|258593856|emb|CBE70197.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 448

 Score =  122 bits (306), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 68/248 (27%), Gaps = 35/248 (14%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + ++    +    L +L  L + + H++ +P+ ++    E L       E+  L  L+  
Sbjct: 177 LKQSQQLLVRQEKLASLGRLAAGLAHELNNPLSSVAGFAEALQRRIETAEIGDLAALAEW 236

Query: 59  SAI----------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                L F R        VD           +E   +++ +  V
Sbjct: 237 RQYVTMIQDEVARAATIVRRLLDFARQREPTFSLVDLYDVALHAVSFVERQASLENQRIV 296

Query: 103 SWTGEK----IDLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIF 149
                        ++   ++ LNL   A  ++             +  +     +     
Sbjct: 297 VAPFPDRSVVQADAQMLQQVFLNLLTNALDAIESGGEIRINAYHRQEAVDPAGEQRWLDV 356

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIID-DHN 206
            +   G+    P+  +++ D    +        +       +  ++K  +          
Sbjct: 357 FVSDTGSGI-SPDNLSRVFDPFFTTKEVGKGTGLGLAISQSIVEQHKGSIEVRSRGIGKG 415

Query: 207 VVLSALLE 214
             +   L 
Sbjct: 416 TTVIVSLP 423


>gi|294498010|ref|YP_003561710.1| two-component sensor histidine kinase KinE [Bacillus megaterium QM
           B1551]
 gi|294347947|gb|ADE68276.1| two-component sensor histidine kinase KinE [Bacillus megaterium QM
           B1551]
          Length = 726

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 79/225 (35%), Gaps = 13/225 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQ 51
           M + I  +  ++ +V  L + I H+I +P+ A+   ++LL+    ED           ++
Sbjct: 503 MQEQIRKS-DTLQVVGQLAAGIAHEIRNPMTALKGFVQLLESSIQEDHSLYFDIIKSELK 561

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKID 110
            I       ++  K   + F        +    D+         +   + VS        
Sbjct: 562 RIETIITEFLVLAKPQAVKFEKKNLAAVVKETIDLLNAQALLENIQFELSVSPQLPMVYC 621

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVD 169
              +  ++L+N+   A      GG++ + V  ++ +    S++  G+     E+  ++ +
Sbjct: 622 EPNQIKQVLINVIKNAIEVTSNGGRIIVEVYSTEPHYVTVSIRDQGDGM-PEERIKRLGE 680

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  E+K R+  E           +L 
Sbjct: 681 PFYTTKEKGTGLGLMVSYKIIEEHKGRIEVESKIGEGTAFHVILP 725


>gi|229087950|ref|ZP_04220060.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
 gi|228695363|gb|EEL48238.1| hypothetical protein bcere0022_45040 [Bacillus cereus Rock3-44]
          Length = 609

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 65/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 383 FVANVSHELRTPLTTMRSYLEALSDGAWQDPNIAPQFLTVTQEETERMIRLVNALLQLSK 442

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLN 121
           L       +   +   D    + D   + K   V +       +        +  ++L N
Sbjct: 443 LDSTEHRLMKEWVDFTDFFNNVIDRFEMSKEQNVIFKRSFSKKSRFIDMDGDKITQVLYN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG VT  ++D ++    S+   G      E   +I +            
Sbjct: 503 IISNALKYSPEGGTVTYRLRDREDMLEISVSDQGMGI-PKENVEKIFERFYRVDKARSRQ 561

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 562 MGGTGLGLAIAKEMIVAHGGSIWAKSEEGKGTTIYFTLP 600


>gi|254412023|ref|ZP_05025798.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180989|gb|EDX75978.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 426

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 62/234 (26%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +       +L +   S + H+  +P+  I +S E+L+         +        +
Sbjct: 185 LRQELAEQHELSELKSRFLSTVSHEFRTPLTTILSSSEMLERYSDRLSPERKAVHFQKIS 244

Query: 61  IIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                  +          +    L +   +        +     
Sbjct: 245 QSVDYMTQLLEDILIYSKADAEKLEFNPTVVNLSEFCQTLVEDLHLEAANKERIQLKCND 304

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                    +   +IL NL   A    P+G  V   +   +N+ I  ++  G      + 
Sbjct: 305 DDICGNFDPKLLRQILSNLLTNALKYSPKGDPVDFELNREENQAILLIRDRGIGIPANDQ 364

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F          TI+   +    V      ++  +  +   D   + +  L 
Sbjct: 365 VHLFEPFHRAQNTGTINGTGLGLAIVKKAVDLHQGMISVQSEIDVGTIFTVNLP 418


>gi|323697584|ref|ZP_08109496.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323457516|gb|EGB13381.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 571

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 78/238 (32%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIE-------D 47
           M+K I   + +  L A+  L + I H+I +P+  +      + +LL++ G +        
Sbjct: 321 MSKQI---VETGKLAAIGELAAGIAHEINNPVAIMIEEAGWVSDLLEDEGQDLPSYGEIK 377

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106
             +  +             +      + +  + + + D  + V+E  +   +  QV +  
Sbjct: 378 RALTQVGNQGRRCKDITHKLLSFARQSDTRATEMSVPDFIREVVEISMQQARFAQVDFDL 437

Query: 107 EKIDLSRER-------AKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLA 158
           +  +             ++LLNL   A  ++   G K+ I     + +   +++  G   
Sbjct: 438 DLDESMPRISASATELQQVLLNLVNNAIQAMEPDGGKLFIRCGVEEGQAAITVEDTGPGI 497

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I D    +        +       + H+    +  E         +  L 
Sbjct: 498 PAANL-ARIFDPFFTTKPVGKGSGLGLSICFGIIHQMGGEIDVESTVGKGTRFTIRLP 554


>gi|317478874|ref|ZP_07938024.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904956|gb|EFV26760.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 914

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +       +    L +   + + H+I +P+ AI     ++ E   E+E +    + 
Sbjct: 512 MKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTNEEERLGYYEIV 571

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +                    +       V       +I             +    +
Sbjct: 572 ESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCPKGVELIYEPS 631

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEK 163
            E I +  ++ +I   +  +   +        ++           F +   G     P+K
Sbjct: 632 DENIVIDGDKNRIFQVISNLIGNAFKFTTAGHISYGYHQEGKYVAFHVTDTGMGI-APDK 690

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +  V   +      +       +       +            + +L 
Sbjct: 691 VDRVFERFVKVNNFAQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLP 743


>gi|308071607|ref|YP_003873212.1| sensor protein yycG [Paenibacillus polymyxa E681]
 gi|305860886|gb|ADM72674.1| Sensor protein yycG [Paenibacillus polymyxa E681]
          Length = 609

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 58/221 (26%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  I +  E LD+  + +  +        R  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTTIRSYAEALDDGAMAEPQVAERFVGVIRNETERMIRLVTDLLHLSR 440

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                                        ++              G+ +    +  ++L 
Sbjct: 441 LDSNEAPLRMQPTDVMEMLDEVADRFSFQMKQKHIRSGMFVEQGIGKVVIDRDQIEQVLD 500

Query: 121 NLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           NL   A    P G      + ++S+     S++  G      +   +I +          
Sbjct: 501 NLMSNALKYTPDGGSIRIEARRNSEGMLSISVQDTGIGIPKKDL-DRIFERFYRVDKARS 559

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +       +   +  ++  E         +  L 
Sbjct: 560 RNMGGTGLGLSIAREIVKAHGGQIFLESEYGQGTCTTFTLP 600


>gi|317154598|ref|YP_004122646.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944849|gb|ADU63900.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 777

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 68/245 (27%), Gaps = 33/245 (13%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           K +   L  S  + AL  L   I HD  + +G I    E+++     D  ++        
Sbjct: 394 KRMEEQLRQSQKMEALGTLAGGIAHDFNNILGVILGYAEIIESGAEPDSGLERRVREISR 453

Query: 60  --------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID- 110
                       L F R        V     + +  +++   +  +  +      ++ + 
Sbjct: 454 AGKRARDLVNQILNFSRQGPQERHPVTLTPLIKEALKLLRSSVPANVEIISRIETDQDNV 513

Query: 111 --LSRERAKILLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSLK 152
                +  +I+LNL   A  ++                         +   +     S+ 
Sbjct: 514 LVDPTQMHQIMLNLCGNASHAMGESGGTLTVTLTDVRDADPVLPPADLGRPERFVRLSVA 573

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G     P+   +I D    +    +   +    V  +   +   L  E          
Sbjct: 574 DTGPGI-DPDVVGRIFDPFFTTKPQGEGTGMGLAMVHGIVKRHDGYLELENHPGAGAAFH 632

Query: 211 ALLEK 215
            LL +
Sbjct: 633 VLLPR 637


>gi|229085933|ref|ZP_04218157.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44]
 gi|228697369|gb|EEL50130.1| hypothetical protein bcere0022_25350 [Bacillus cereus Rock3-44]
          Length = 458

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 73/235 (31%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L         +   +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENVTEEEQKHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    +
Sbjct: 285 SKRMSSLCKQLLTLASLDKEETVLQVKEFNLQKQIKDVVFMLEWKWREKDIAVEFDVPNM 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +++ +     ++  NLF  +     +GG +  + ++ +N    S+  +G      E   +
Sbjct: 345 NITGDENLLHQVWANLFTNSIKFTDQGGTIEFAAKELENSVEISVSDSGIGMEQEEVN-R 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +  E            + K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVHKIVELHHGIISVESKKGEGTTFRIEIPK 458


>gi|189468425|ref|ZP_03017210.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
 gi|189436689|gb|EDV05674.1| hypothetical protein BACINT_04822 [Bacteroides intestinalis DSM
           17393]
          Length = 497

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 63/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--SM 58
           + + +     S +L ++  + + H+I +P+ AI     LL     +     +I  +    
Sbjct: 261 LNEALRKARRSDELKSIFLANMSHEIRTPLNAIVGFSSLLAYGESDLTKEDIIEFTSLIE 320

Query: 59  SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                L  +                    SV     L +I       +     + +   G
Sbjct: 321 KNSRLLMVLISDILDLSKIESNTMEFSFCSVSLHRVLNEIGSAQRINMREGVELLLDLPG 380

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +++ +  +    ++++ NL   A      G         +       ++  G      E 
Sbjct: 381 QEVTVYTDPARLSQVINNLVNNAIKFTSEGNIRIGYRPAASGYVNIFVEDTGTGM-SREV 439

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I D   +         +       +    + ++            +  L 
Sbjct: 440 LEHIFDRFYKGDSFKQGTGLGLSICKTIVKRFEGKIEVTSTPGKGTCFTITLP 492


>gi|219667423|ref|YP_002457858.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537683|gb|ACL19422.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 463

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+++        L   L + I H++ +P+ +I + +E   +     + E + +I     
Sbjct: 225 MAESLK---KQERLRKQLTADIAHELRTPLTSIRSYIEAFQDGVLPADKENLAIINEEIE 281

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                           +  +R           +    ++   +     +        +  
Sbjct: 282 RLTRLSSDLKDLNVAEMGALRPYLTQVNLSALIDKTVNMLSPLIQEKGISLTWHKPESIL 341

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    ++  NL   A+      GK+ + ++    E + ++  +G      +    F
Sbjct: 342 IEGDEYLLTRLFYNLLHNAYKFTESPGKIEVQMELRHQEVLITISDSGIGIPEEDLPFIF 401

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +         I       +A  ++  L  E   D       LL 
Sbjct: 402 ERFYRSEKSRSRETGGTGIGLALAQQIALLHQGTLTVESCPDKGSRFMLLLP 453


>gi|257453593|ref|ZP_05618883.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus
           SK60]
 gi|257449051|gb|EEV24004.1| phosphate regulon sensor kinase PhoR [Enhydrobacter aerosaccus
           SK60]
          Length = 442

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 62/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
             + + H++ +P+  I   +E L ++  ++  + +        +      +      +  
Sbjct: 209 FVANVSHELRTPLTVIMGYVETLSEQPELDPRIARAFTQMMQQSQRMNNIINDLLLLSRL 268

Query: 77  VDSL--------------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
            +                + L D  Q+          + +  T   +         L NL
Sbjct: 269 ENDEKPAEPKDIDIPKMLMQLFDDAQMYNKSYDHMIHLHIDSTLHILGYEDYLRSALSNL 328

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
              A    P+GG+++IS  +      FS+  NG          ++ +             
Sbjct: 329 ITNAMKYTPKGGEISISWHEYDAGVCFSVTDNGIGIEQRHI-QRLTERFYRVDTGRSRET 387

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  + +++   L            +    K
Sbjct: 388 GGTGLGLAIVKHVLYQHHATLDITSTVGKGSTFTVTFPK 426


>gi|320353266|ref|YP_004194605.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121768|gb|ADW17314.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 584

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 33/239 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSA 60
           + S  + A+  L   I HD  + +  I    EL+            +E ++ I  +S  A
Sbjct: 329 VQSQKMEAIGTLAGGIAHDFNNILAGIMGYAELMQRDLARASTSRFNEYLRNILFASERA 388

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------EKIDLSRE 114
              ++ +      + +V   + +  + + +   I       ++           I    +
Sbjct: 389 QHLIRQILAFSRQSPTVMQPVRMRQVIEEVILLIRASLPTTIAIETRLRSESCVIADQVQ 448

Query: 115 RAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKINGNLA 158
             ++L+NL   A  ++                           +        +   G   
Sbjct: 449 MHQVLMNLCTNAGQAMKHQGGTLTIRLDDVVLDQQIADCHQRLEPGPFVRIQVSDTGQGI 508

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +I D    +    +   +    V  +    K  +L E  +      +  L +
Sbjct: 509 -PEHIRDRIFDPFFTTKPQGEGTGLGLSMVHGIVSAMKGCILVESTEGRGSCFTLYLPR 566


>gi|270294120|ref|ZP_06200322.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
 gi|270275587|gb|EFA21447.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D20]
          Length = 914

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +       +    L +   + + H+I +P+ AI     ++ E   E+E +    + 
Sbjct: 512 MKRELLVAKEKAETSDRLKSAFLANMSHEIRTPLNAIVGFSRIIAESTDEEERLGYYEIV 571

Query: 57  SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             +    L+               +               + D                 
Sbjct: 572 ESNNERLLQLINEILDLSKIESGIVEFTITPVRLHPLCKEIHDAHIFRCPEGVELIYEPS 631

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         +++ NL   A       G ++   +       F +   G     P+
Sbjct: 632 DENIVIDGDKNRIFQVISNLIGNAFKFTTT-GHISYGYRREGKYVAFHVTDTGMGI-APD 689

Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           K  ++ +  V   +      +       +       +            + +L 
Sbjct: 690 KVDRVFERFVKVNNFAQGTGLGLSICKTIIERLGGNISVTSEVGKGTTFTFVLP 743


>gi|253699311|ref|YP_003020500.1| histidine kinase [Geobacter sp. M21]
 gi|251774161|gb|ACT16742.1| histidine kinase [Geobacter sp. M21]
          Length = 542

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 16/229 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
            +     + S  L +L  L + I H+I +P+  I     L+             +  +  
Sbjct: 287 TQMQAQLIRSEKLASLGELVAGIAHEINNPLTGILVFSSLIQSNKKLDETLRNDIDTVIR 346

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGE 107
            +      +K +      +     L  L  I +     I                S   +
Sbjct: 347 ETKRCAGIVKGLLEFARCSPPQKELHSLSGISEAALTLIRHQILFQDVTIVREYASDLPK 406

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFT 165
            +  + +  ++L+N+F+ A  ++   G + IS             +  NG          
Sbjct: 407 ILIDANQIEQVLVNMFVNAGHAMLGEGVLHISTGVASDGGAAFIRVVDNGCGIPDDHLTK 466

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +  E+  R+            +  L 
Sbjct: 467 IFDPFFSTKANKGTGLGLSVSYGIVQEHGGRIDVTSKIGAGTAFTVTLP 515


>gi|332686790|ref|YP_004456564.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311]
 gi|332370799|dbj|BAK21755.1| two-component sensor kinase [Melissococcus plutonius ATCC 35311]
          Length = 608

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++H+ +E L E   ++           ++            L   R
Sbjct: 378 FVSNVSHELRTPLTSMHSYIEALSEGAWKNPEVAPDFLKVTLEETDRMIRMINDLLNLSR 437

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
           +  G +          + +  + D   ++ D    +  +   +T   + L  +     ++
Sbjct: 438 MDSGTSELQLEYVNFNELVNFVLDRFDMMLDKEKKNYTIDREFTRRDLWLEIDTDKIIQV 497

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VE 173
           L N+   A    P GGK+T  + ++ N  +FS+   G      +    F +    +    
Sbjct: 498 LDNILNNAIKYSPDGGKITCRLLETHNNAVFSVTDQGLGIPKKDIAKVFDRFYRVDKARA 557

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  +         L 
Sbjct: 558 RKQGGTGLGLAISKEVIRAHNGFIWVESEEGKGSTFYISLP 598


>gi|323495058|ref|ZP_08100147.1| C4-dicarboxylate transport sensor protein [Vibrio brasiliensis LMG
           20546]
 gi|323310715|gb|EGA63890.1| C4-dicarboxylate transport sensor protein [Vibrio brasiliensis LMG
           20546]
          Length = 594

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 68/233 (29%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV--GIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +     L        D+ +  
Sbjct: 360 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGKRFLARQSYERVDDNLSR 419

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTG 106
           I   +         +R     + S +          +           A    +++    
Sbjct: 420 ISALTDRMAKISNQLRSFTRKSDSNEVSKLDIKPLILSAKELLAAQCKAKQVDLRLDLEQ 479

Query: 107 EKID---LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
           +  +      +  ++L+NL   A  +L +  + TI +    S +     +  NG    + 
Sbjct: 480 QLPNVELNPIQFEQVLINLVTNAMQALEQQDQRTIEISATVSDSHIAIFVDDNGPGIAYS 539

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+   + +    +  +   +       +       L               L 
Sbjct: 540 EQHQ-LFEPFYTTKKNGLGLGLSISQQITQAMGGTLDIADSPLGGARFVITLP 591


>gi|315918685|ref|ZP_07914925.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313692560|gb|EFS29395.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 417

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 64/226 (28%), Gaps = 17/226 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     E  + I++   +  
Sbjct: 187 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 244

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                        +VD      +I + +   +     + +     +  
Sbjct: 245 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKVGKGVELILEEPFPECY 304

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     +++ N    A     +G       Q S  +  F ++  G      ++ +  
Sbjct: 305 IYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVF 364

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  + +    +       +  +    +  E  +         
Sbjct: 365 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVESTEGVGSCFWFT 410


>gi|220930752|ref|YP_002507661.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
 gi|220001080|gb|ACL77681.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulolyticum H10]
          Length = 607

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 66/231 (28%), Gaps = 25/231 (10%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
               L ++     + + H++ +PI +I +  E L     ++    +  + +I   +    
Sbjct: 375 EQQKLESMRREFVANVSHELRTPITSIKSYTETLLDGAVEDHETSNRFLSVIDSEADRMT 434

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         + M            +  + +  ++            V      I+
Sbjct: 435 RLVKDLLQLSRLDNQQMNWKIEKVSLDAMVKTIVERLKIESQRKNQKLESYVIGDIPVIN 494

Query: 111 LSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
             ++R  ++++NL   +       G++T+ V    N+    +  +G        P  F +
Sbjct: 495 ADKDRLEQVVVNLISNSIKYTAEYGEITVYVGKIYNDVYMKVTDSGIGIPGESLPRVFER 554

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +    +       +   +   +           +   + +
Sbjct: 555 FYRVDKARSRDMGGTGLGLSIAKEIVQAHGGTINISSEVGKGTEVVVKIPR 605


>gi|156974548|ref|YP_001445455.1| hypothetical protein VIBHAR_02266 [Vibrio harveyi ATCC BAA-1116]
 gi|156526142|gb|ABU71228.1| hypothetical protein VIBHAR_02266 [Vibrio harveyi ATCC BAA-1116]
          Length = 680

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++EL+     +E     E +  I
Sbjct: 434 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELIQFELGEEASRVQEEIDAI 493

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       ++    +  
Sbjct: 494 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDIEFVTDLQA 553

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL M    ++   GK+T+  +D   +         +   G    
Sbjct: 554 HTSVEINRHHLLQILVNLQMNGIHAMDGKGKLTVVSEDWIEDGELKGAAIHVTDEGCGI- 612

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE  ++I      +  D   +       +  +    L  E         S  L K
Sbjct: 613 KPENLSRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 668


>gi|78221916|ref|YP_383663.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78193171|gb|ABB30938.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 248

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 76/227 (33%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61
           +     +  +  L  + + + H++ +P+  I ++ ++ L E  + + V +++   +  A 
Sbjct: 20  LELLAFNEKMAELGRMAAGVVHELNTPLSVIVSATQMILREEELPEFVREMVERVNEEAH 79

Query: 62  IRLK-------FMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +       F R   G     D+   +   +  +  +       V          ++ 
Sbjct: 80  RLAELTKGVLSFARRDSGGRAEADANQVIGEVMTFLRFEAGKRSIGVIEDLDHRLPFIAA 139

Query: 114 ERA---KILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           +     ++++NL M A  ++  GG +   +VQ+S+      +   G     P+   +I  
Sbjct: 140 DANRVKQVIINLVMNAFQAMGEGGTLFLRTVQESETAVTVQVADTGPGI-PPDAQERIFT 198

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +   +  +    L       +  + +       +    
Sbjct: 199 PFFTTKEPGEGTGLGLFITRKLMEGIGGAIAVKSVVGEGTTFTLTFP 245


>gi|83944133|ref|ZP_00956589.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
 gi|83845000|gb|EAP82881.1| two-component hybrid sensor and regulator [Sulfitobacter sp. EE-36]
          Length = 550

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 66/237 (27%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           M  +I   L    L A   S + H++ SP+ +I  S+ LL            + ++++  
Sbjct: 295 MLHDITERLEQEQLQADFISMVSHELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAH 354

Query: 55  LSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            ++   ++ +  +      +             S      L       + F    K   V
Sbjct: 355 RNADRLVLIINDILDMEKISSGRLDFELETADLSELVAESLRANATAHQRFGLQIKCHGV 414

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                    +    ++L NL   A      GG V ISV  +      S++  G      +
Sbjct: 415 DTPTYIETDANRIIQVLTNLMSNAAKFSKPGGTVEISVDKTPENVCVSVRDEGMGIAPED 474

Query: 163 KF---TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +  D             +       +       +     +      +  L 
Sbjct: 475 QHKIFQRFADMANSDRATKGGTGLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLP 531


>gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 510

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
           ++I    +   +     S + H++ +P+ ++  SL LL              ++ +    
Sbjct: 271 EDITQRQAVERMKNEFISLVSHELRTPLTSMRGSLGLLKMGVYDNQPDKAKRMLDIAVTD 330

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTG 106
                      + L    +G V  +  + D+  +I+  +     +  +          + 
Sbjct: 331 CDRLGRLVNDILSLERLDSGQVTLVKEVCDVADLIKHSVEAIDAIAEAAGIAIQVTPLSA 390

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         + L NL   A         +T+ VQ   +  +F +   G      E   +
Sbjct: 391 QVYVAPDTIIQTLTNLLSNAIKFSESNTTITVGVQHQSDCILFHVTDQGRGI-PTEHLER 449

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I                   +       +  ++   +  E            L 
Sbjct: 450 IFGRFQQVDVSDSRQKGGTGLGLAICRSIIQQHGGGIWAESTLGSGSTFYFTLP 503


>gi|157373267|ref|YP_001471867.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella sediminis HAW-EB3]
 gi|157315641|gb|ABV34739.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella sediminis HAW-EB3]
          Length = 705

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 73/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +++  L AL  L + I H+I +P   I  ++EL+     D     +E + L+
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELMKYELGDRAEDVEEEIDLV 511

Query: 54  RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                     ++ +                     +  +  + +       V    +++ 
Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQLTPIIEEMLVLVRHSIQEQKVILNQELNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++   G++ I   D             ++  G    
Sbjct: 572 SYPIEVNRPQLLQVLINLVVNAAHAMDEEGRIWIRTYDWVQRGEPIGVKIEIEDEGKGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+ ++I D    +  D   +       +       +          + +  L
Sbjct: 631 PQEQLSRIFDPFYTTRADGTGLGLSLSYGIIKRIGGTIEVSSTVGKGTLFTIGL 684


>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
 gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
            [Raphidiopsis brookii D9]
          Length = 1329

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 68/240 (28%), Gaps = 28/240 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
            ++I        +     S + H++ +P+ +IH SL +L              ++Q+   S
Sbjct: 804  RDITERKQVEKMKDEFVSVVSHELRTPLTSIHGSLGMLTSGLLSTTSEQGKRLLQIATDS 863

Query: 57   SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KR 99
            +   +  +                   + D    +     +++                 
Sbjct: 864  TERLVRLINDILDIERIESGKVKMERENCDLRDLINSAINIMQALADKAGVSLSIQNSNS 923

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
               S + +         + L NLF  A      G  V +  +  K++ + +++  G    
Sbjct: 924  SSNSSSIQLWADPDRIIQTLTNLFSNAIKFSEPGSTVYLMTELQKDQVLVTVQDTGRGIP 983

Query: 160  FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    F +    +       D   +       +  ++  ++  + +          L 
Sbjct: 984  EDKLESIFERFQQVDSSDSRNHDGTGLGLAICKSIVQQHGGKIWVKSVLGQGSSFYFTLP 1043


>gi|147678113|ref|YP_001212328.1| membrane signaling protein [Pelotomaculum thermopropionicum SI]
 gi|146274210|dbj|BAF59959.1| membrane signaling protein [Pelotomaculum thermopropionicum SI]
          Length = 546

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 66/221 (29%), Gaps = 13/221 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M K +   L  ++L+  + + I H+I +P+  +   L+LL       +  +   L     
Sbjct: 323 MEKEMA-RLEQLNLIGEMAAGIGHEIRNPMTTVRGFLQLLCGKKEFSKYREYFSLMIDEL 381

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---- 116
                 +        +      +  + Q++     + +   +           +      
Sbjct: 382 DRANSIITEYLSMAKNKPVDKKMQSLNQLLSAMAPLIEADAIKNNNYIKMELSDIPDLLL 441

Query: 117 ------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +++LNL      ++P G  + I      NE I S+K  G+         +I   
Sbjct: 442 DEKEIRQLVLNLVRNGLEAMPPGQNLIIKTYMEDNEVILSVKDQGHGIEPG-VLEKIGTP 500

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              +  +   +       +A  +   +  E           
Sbjct: 501 FFTTKDNGTGLGLAVCYSIAARHNASIKVETSP-KGTTFYI 540


>gi|86156846|ref|YP_463631.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            dehalogenans 2CP-C]
 gi|85773357|gb|ABC80194.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
            dehalogenans 2CP-C]
          Length = 1527

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 14/227 (6%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
            +A      +    L AL  L + + H++ +P+G I NSL     +L   G    ++ ++ 
Sbjct: 1283 LAHAQRQLIQQERLAALGELSAVVAHEVRNPLGVIFNSLGSLRRMLRPQGDARMLLDIVG 1342

Query: 55   LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +          L F R +            + +              +          
Sbjct: 1343 EEADRLNRIVGDLLDFARPSTPEVRPEPLDRVVEEALATALAQNGQPIEILREVDPALPQ 1402

Query: 111  LSRERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +  +   +   +  VA  +   +PRGG++T+ ++   +  +  L+  G      E   +I
Sbjct: 1403 VPMDARLVRQAVVNVAVNAVQAMPRGGRLTVRLRRDGDAAVLELEDTGAGI-PEEVRGRI 1461

Query: 168  VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +      +    V  +   +   +            +    
Sbjct: 1462 FEPFFTTKASGTGLGLAVVRRIVEGHGGEVAVTSRPGAGTAFALRFP 1508


>gi|49480228|ref|YP_034908.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331784|gb|AAT62430.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 463

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|167764948|ref|ZP_02437069.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
 gi|167697617|gb|EDS14196.1| hypothetical protein BACSTE_03340 [Bacteroides stercoris ATCC
           43183]
          Length = 828

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 56/228 (24%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK        +    L  + + H+I +P+ AI     LL   +     ++ M ++  ++ 
Sbjct: 601 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLVQGENPEEREQYMAIVEENNE 658

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGE 107
             +  +                    +D      D+ + ++        V          
Sbjct: 659 LLLQLISDILDLSKIEAGTFDFVKQELDVNQLCEDMVRTMKLKARPGVEVVFDHRLPECI 718

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       +++ N    A      G       Q   N   F +   G      ++    
Sbjct: 719 IVSDRNRLNQVIANFMNNAIKFTSTGSIRLGYGQAETNLLRFYVADTGIGIIQEKQAEIF 778

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +    +  E            L 
Sbjct: 779 DRFVKLNSFVHGTGLGLSISKSIVEQLGGTIGVESESGKGACFWFTLP 826


>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
            29413]
 gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
            [Anabaena variabilis ATCC 29413]
          Length = 1629

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 74/233 (31%), Gaps = 21/233 (9%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56
            ++I        +     S + H++ +P+ +IH SL +L       +      ++++   S
Sbjct: 1112 RDITERKQIERMKDEFVSVVSHELRTPLTSIHGSLGMLASGLLPADSEQGRRLLEIATDS 1171

Query: 57   SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------SWTG 106
            +   +      + +    +G V       ++  +IE  +++ + +             + 
Sbjct: 1172 TERLVRLINDILDIERIESGRVKMERESCNLTDLIESAVSIMRPLANKAGVKLSVSHPSI 1231

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +         + L NL   A         V +  Q   +E + ++K NG      +    
Sbjct: 1232 QLWVDPDRIVQTLTNLLSNAIKFSTAEKTVWLVAQQYGDELLVTVKDNGRGIPADKLDSI 1291

Query: 164  FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +       D   +       +  ++  R+  E +          L 
Sbjct: 1292 FERFQQVDSSDSRNHDGTGLGLAICQSIVQQHGGRIWAESVLSEGSNFYFTLP 1344


>gi|303247119|ref|ZP_07333394.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio fructosovorans JJ]
 gi|302491545|gb|EFL51430.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio fructosovorans JJ]
          Length = 611

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 66/229 (28%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
           M +          L A+  L + + H+I +P+ +I               ++    + ++
Sbjct: 372 MRRLEAEIRRREKLAAVGNLAAGVAHEIRNPLSSIRGYAAYFGAKFAPGSEDRQAAEVMV 431

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKI 109
           + +   +      ++F R +      V          ++   D  A    V ++   E  
Sbjct: 432 REVDRLNRVISELIEFARPSDIKRRPVRLSELASHAARLTLPDATARGVSVDIAGAVEGP 491

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFT 165
           ++  +  ++   L  +   ++       +               S+   G      E+  
Sbjct: 492 EILADPDRLTQALLNLCLNAIQAMQAGGVMTLATGTAPDGRAFLSVADTGGGIDDMER-D 550

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +      +       +   +   ++     +   V +  L 
Sbjct: 551 RIFDPYYTTKPHGTGLGLPIAHKIVAAHGGEIVLAARPEGGTVATVYLP 599


>gi|228998006|ref|ZP_04157607.1| hypothetical protein bmyco0003_25750 [Bacillus mycoides Rock3-17]
 gi|229005563|ref|ZP_04163273.1| hypothetical protein bmyco0002_24980 [Bacillus mycoides Rock1-4]
 gi|228755663|gb|EEM04998.1| hypothetical protein bmyco0002_24980 [Bacillus mycoides Rock1-4]
 gi|228761739|gb|EEM10684.1| hypothetical protein bmyco0003_25750 [Bacillus mycoides Rock3-17]
          Length = 458

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 73/234 (31%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57
           K +  ++  +D +     S + H+  SP+ +I    + L             +Q+I   S
Sbjct: 226 KKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEKMTEDERKRYLQIIEGES 285

Query: 58  MSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                  K +                   +         + ++   +K + V +    I+
Sbjct: 286 KRMSSLCKQLLTLASLDKEEKVLQIKEFDVHKQMKDVIFMLEWKWREKDIAVEFDVPSIN 345

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     ++  N+F  +      GG +  +V++ +   + ++  +G      E   +I
Sbjct: 346 VRGDENLLHQVWTNIFTNSIKFTDSGGTIGFAVEELEESVVIAISDSGIGMEQEEV-ERI 404

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D            ++   +    V  +   +  ++  E I          L K
Sbjct: 405 FDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGKVSVESIRGEGTTFRIELPK 458


>gi|219849554|ref|YP_002463987.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543813|gb|ACL25551.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 546

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 52/217 (23%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLKF---------- 66
           S I H++ +P+  I    E +     +    +  + +++    A    +           
Sbjct: 321 SVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVIGEEADRLARQIQDLLDVSRI 380

Query: 67  ----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
               +RL +        +  +              +                  ++  NL
Sbjct: 381 AAGGLRLEYSDVSLQLLVKEVVRRFAAQVGDRIEFEIRVPDDMPPVYADYERLRQVFTNL 440

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE--STID 177
              A    P GG + I  +      I  +   G      E    F +    +        
Sbjct: 441 IENAVKYSPNGGTIRIGARAEGEMAIVYVADQGIGIPPEEQDLIFERFYRVDNRLRRDRP 500

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  Y    +   +  R+  E            L 
Sbjct: 501 GSGLGLYITRAIVEAHGGRIWVESQVGRGSRFLFTLP 537


>gi|153953972|ref|YP_001394737.1| PhoR [Clostridium kluyveri DSM 555]
 gi|219854586|ref|YP_002471708.1| hypothetical protein CKR_1243 [Clostridium kluyveri NBRC 12016]
 gi|146346853|gb|EDK33389.1| PhoR [Clostridium kluyveri DSM 555]
 gi|219568310|dbj|BAH06294.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 575

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 71/222 (31%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++ +   + + H++ +P+ +I    E L   ++V   ++ + +I   +      +  + 
Sbjct: 344 ENMRSQFVANVSHELKTPLTSIKGFAETLKYVEDVENRNKFLNIIDDEAERLTRLINDIL 403

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
                          +D    + D+  +++ F           + E  D+  +     ++
Sbjct: 404 TLSHIESNEMDKIEFIDINGIIDDVCYMMKPFADKKHIKIKKISCEMPDIWGDADRFKQM 463

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           ++NL   A      GG V +     +N+ +  ++ NG      E   ++ +         
Sbjct: 464 VINLVDNAIKYTNNGGWVKVGTAFQENDCLIWVEDNGVGI-SKEHQERLFERFYRVDKAR 522

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +     +    V  +  +    +            +  + 
Sbjct: 523 SRSQGGTGLGLAIVKHITLKFSGTIELNSEIGKGSKFTVRIP 564


>gi|108759412|ref|YP_633337.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463292|gb|ABF88477.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 578

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +       ++S  + A   +  R+ H+I +P+  I  SLE L                  
Sbjct: 346 LKATTERLMASERIAAWQEVARRLAHEIKNPLTPIRMSLETLQAAQEAKHPRFQDMFKES 405

Query: 56  ------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108
                         +              + + LG++ Q +    A            + 
Sbjct: 406 AGVVLEEVDRLRRIVDEFSHFARMPKPQLAPVDLGELAQSVLALYATPPTGIQILPTLQT 465

Query: 109 ----IDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +  ++L+NL   A  ++   GG + + V+ ++ + I  ++ +G      E 
Sbjct: 466 GVVARVDRDQLTQVLVNLVKNAEEAMASTGGTLRVRVRSTEADAIVEVEDSGPGIPL-EH 524

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +    +      +       +  E+  +L       H    S +L +
Sbjct: 525 RARIFEPYFTTKDGGTGLGLAIASRILQEHGGKLEVGGEPGHGARFSLVLPR 576


>gi|91200750|emb|CAJ73802.1| hypothetical histidine kinase protein [Candidatus Kuenenia
            stuttgartiensis]
          Length = 1066

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
             K +   +  S  L ++  L + I H+I +P+GAI NS+ +LD      G + +++++I 
Sbjct: 820  RKRMEDQVRRSEKLASMGELAAAIAHEIRNPLGAICNSVGILDSHLKLSGQDMDLLEMIV 879

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWT 105
              S      +               L  +  I +     +  DKR         +  +  
Sbjct: 880  GESERLDRIISDFLSFAHPREPSLVLQDIKGIIKNTIFLLGQDKRFTDKIEIKEIYETVL 939

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFP 161
             +    +    +IL NLF+ +  ++P GG++ I V+ +    +N     +  NG      
Sbjct: 940  PKVYIDTDLIHQILWNLFINSLDAMPDGGRIRIVVRKTTLFLRNAIEIIISDNGIGMAEH 999

Query: 162  EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ +    +  +   +    V  +  E+   +  +            L 
Sbjct: 1000 EIN-KVFEPFYTTKSEGTGLGLSVVQRIIDEHGGTIDVKSKYGRGTAFYIKLP 1051


>gi|83955168|ref|ZP_00963824.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
 gi|83840497|gb|EAP79670.1| two-component hybrid sensor and regulator [Sulfitobacter sp.
           NAS-14.1]
          Length = 550

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           M  ++   L    L A   S + H++ SP+ +I  S+ LL            + ++++  
Sbjct: 295 MLHDVTERLEQERLQADFISMVSHELRSPLTSIKGSMGLLLSKAAGQLPPKAEGLLEIAH 354

Query: 55  LSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            ++   ++ +  +      +             S      L       + F    K   V
Sbjct: 355 RNADRLVLIINDILDMEKISSGRLDFELETADLSELVAESLRANATAHQRFGLQIKCHGV 414

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                    +    ++L NL   A      GG V ISV+ +      S++  G      +
Sbjct: 415 DTPTYIETDANRIIQVLTNLMSNAAKFSKPGGTVEISVEKTPENVCVSVRDEGMGIAPED 474

Query: 163 KF---TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +  D             +       +       +     +      +  L 
Sbjct: 475 QHKIFQRFADMANSDRATKGGTGLGLSICKAIVEGLGGTIDFVSKEGRGTTFTFTLP 531


>gi|229816269|ref|ZP_04446578.1| hypothetical protein COLINT_03320 [Collinsella intestinalis DSM
           13280]
 gi|229808120|gb|EEP43913.1| hypothetical protein COLINT_03320 [Collinsella intestinalis DSM
           13280]
          Length = 502

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 70/237 (29%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA N+  +L        L S + H++ +P+ A+  ++E + +     + E ++ +   + 
Sbjct: 257 MAANLERDLKRER---RLTSDVAHELRTPLMAMQATVEAMQDGVYPTDAEHLETVASETR 313

Query: 59  SAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106
                ++       +        +D +  +     ++ +   +     +           
Sbjct: 314 RLARLVQQTLDLSRQENHAAPLRLDQVDIVQLTRTIVNNQHQLFHNKGLHLRFADEMQGR 373

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    + ++NL   A    P  G V +SV   +   + S+   G      +  
Sbjct: 374 SAVITCDADMITQCVINLMSNAMRYTPEDGWVVVSVHGDRKHVMVSVSDTGIGIAKDDL- 432

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I                   +       +   +   +  E   +     +  L +
Sbjct: 433 ARIFGRFWRADASRAREAGGLGVGLAVTKTIVERHHGFIAVESELEKGTTFTLHLPR 489


>gi|328952923|ref|YP_004370257.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453247|gb|AEB09076.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 491

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 63/232 (27%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
           + K     +    + +L  L + I H + +P+  I  S +++ E                
Sbjct: 246 LEKRQNQLVQIKKMSSLGVLTAGIAHQLNNPLNNISTSCQIVLEELDICNHEFMHKMLTN 305

Query: 50  -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTG 106
            +Q +  +       L+F R+             +    +++         +  QV    
Sbjct: 306 VIQEVHRARDIVKGLLEFSRVRDFSLNPTVLRDVIARAVRLVASQAPPGVEIIQQVPDDL 365

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEK 163
                 +   ++ +NL + A  ++            +     + + +++  G        
Sbjct: 366 ILDLDVQRMQEVFINLLLNATQAIEELPGQIKIAAWADEARQQAMITVEDTGVGIPPEAL 425

Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +     +       +  +++  +  E         +  L 
Sbjct: 426 DKIFDPFFTTKEVGLGTGLGLSIAYGIVEKHRGTITVESKPGEGTRFTISLP 477


>gi|196035779|ref|ZP_03103182.1| sensor histidine kinase [Bacillus cereus W]
 gi|195991746|gb|EDX55711.1| sensor histidine kinase [Bacillus cereus W]
          Length = 461

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ +Q + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLQYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|16078513|ref|NP_389332.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221309319|ref|ZP_03591166.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313645|ref|ZP_03595450.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318568|ref|ZP_03599862.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322841|ref|ZP_03604135.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321315207|ref|YP_004207494.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|729901|sp|P39764|KINC_BACSU RecName: Full=Sporulation kinase C
 gi|514330|gb|AAA66183.1| sensor kinase [Bacillus subtilis]
 gi|520577|dbj|BAA07045.1| histidine protein kinase kinC [Bacillus subtilis]
 gi|520842|dbj|BAA07049.1| kinC [Bacillus subtilis]
 gi|2633820|emb|CAB13322.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|3282134|gb|AAC24924.1| histidine protein kinase [Bacillus subtilis]
 gi|320021481|gb|ADV96467.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 428

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 72/225 (32%), Gaps = 17/225 (7%)

Query: 4   NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           N      S  L   + L + I H++ +P+ ++   L+++     + +      +      
Sbjct: 202 NERLARESQKLSITSELAAGIAHEVRNPLTSVSGFLQIMKTQYPDRK--DYFDIIFSEIK 259

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKI 109
                +                  + ++++                ++K  + +      
Sbjct: 260 RIDLVLSELLLLAKPQAITFKTHQLNEILKQVTTLLDTNAILSNIVIEKNFKETDGCMIN 319

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +N+      ++P+GG VTIS   + +  + S+K  GN     EK  QI  
Sbjct: 320 GDENQLKQVFINIIKNGIEAMPKGGVVTISTAKTASHAVISVKDEGNGM-PQEKLKQIGK 378

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +     + +  E+   L  E       V   +L 
Sbjct: 379 PFYSTKEKGTGLGLPICLRILKEHDGELKIESEAGKGSVFQVVLP 423


>gi|262404277|ref|ZP_06080832.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio sp. RC586]
 gi|262349309|gb|EEY98447.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio sp. RC586]
          Length = 597

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 68/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              ++ +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEDNLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103
           I   +       + ++     + S +          +          +  +   +  +V 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSSEQQDVQLYPLILSAKELMAAQFKAQMTKLELCEVE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + ++    + +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQTERVVQIKLQLSEQQIQLWVDDNGPGVGV- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHGMQGELSVTSSPLGGARFTISLPR 590


>gi|240139593|ref|YP_002964069.1| putative sensor hybrid histidine kinase with two PAS and two
           response regulator receiver domains [Methylobacterium
           extorquens AM1]
 gi|240009566|gb|ACS40792.1| putative sensor hybrid histidine kinase with two PAS and two
           response regulator receiver domains [Methylobacterium
           extorquens AM1]
          Length = 622

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            K++   L  S  + AL  L   I HD  + + AI  SLEL    + +      ++    
Sbjct: 246 QKSLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNAT 305

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            ++          L F R    +   VD    +  +  +    +     V      +   
Sbjct: 306 GAAQRGSALTKRLLSFSRSNDAHARPVDPNALIEGMSALFGSSLGGHVSVVRDLEPDMPF 365

Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157
              +  ++ L +  +   +               R               + S+   G  
Sbjct: 366 ALVDPDQLELAVLNLCINARDAMPDGGTVTISTRRAEISDDPDLKPGTYAVVSVADEGTG 425

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   ++ +    +        +    V  LA +   RL           +   L +
Sbjct: 426 I-PPEILERVCEPFFTTKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484


>gi|288573392|ref|ZP_06391749.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288569133|gb|EFC90690.1| multi-sensor hybrid histidine kinase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1129

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 61/239 (25%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +      L  + + H+I +P+ A+    EL  E   +++  + +     ++ 
Sbjct: 479 AKEEAERANRAKSAFL--ANMSHEIRTPMNAVLGMTELALETTYDEDQREYLETIHEASC 536

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105
             +  +      +      + +      + +                    +  +     
Sbjct: 537 SLMDIINDILDISKIESGHMEIDSHPFDLGEVAWKSASYLAKEAHGKGLELNVDIDEELA 596

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161
              I  S    +I++NL   A      G  +     +      +     ++  G      
Sbjct: 597 ESYIGDSVRIRQIMVNLLSNAVKFTDEGEILMSVKAMEKTAKMDSVEIRIEDTGIGLSEK 656

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I    +              +       L      +L  +       V S  + 
Sbjct: 657 EI-ARIFSPFIQADVSTTKRYGGTGLGLSICKKLVEIMGGKLEVQSAPGKGSVFSFTIP 714


>gi|218887291|ref|YP_002436612.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758245|gb|ACL09144.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 480

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLI 53
           M +             L  +  + + I H+I +P+G I +S ELL +     +    +++
Sbjct: 247 MQEKQRLERELHQHEKLAGMGRVVASIAHEIRNPLGIIRSSAELLLKRPSSSDPVTARIL 306

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVS 103
           +     A    + +     Y           + + V++              V    +  
Sbjct: 307 QAIYDEAKRLSQTVNDFLDYARPRQPRQDPVEADGVLDRVLGFLEGELARREVAVARETE 366

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +   N+ + A  ++   G +T++ +   +    + + +G     P  
Sbjct: 367 PGITISGDGDLLYRAFYNIMVNALQAMDGPGSITVTSRRDGDAVELAFRDSGPG-FDPAN 425

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +++D    +  D   +    V  +   +   L  +   +   V+   L 
Sbjct: 426 RERLLDPFFTTKDDGTGLGLPIVNSIITSHGGSLRIDNAPEGGAVVYVRLP 476


>gi|94265276|ref|ZP_01289035.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454257|gb|EAT04573.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 412

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------Q 51
            K +   +  +  +VA+  + + + H+I +P+G I   L+L      +  V+       +
Sbjct: 156 EKELAEKIRHTEKMVAMGQMTAGLAHEINNPLGVILCYLDLAKRQATDPLVLGDLEIIEK 215

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107
             R         L F R    +    +    + ++  ++    A    V           
Sbjct: 216 QTRGCKKIVGDLLAFARGGESHKKLQELAPIIKEVVDMVAPQFAKQGVVIDLSLAGELPP 275

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFPEKF 164
            +  + +  ++ LNL M A  ++P  G         ++        ++ NG      E  
Sbjct: 276 LLLDNNKLKQVFLNLLMNACQAMPPKGGWIEIRAVLESPAGRVRVWVRDNGEGIAAAEV- 334

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +    +   +       +  E+   +  E            L 
Sbjct: 335 ERIFEPFFSTKATGEGTGLGLAVSYGIIKEHGGDIEVESRLGEGSCFIIDLP 386


>gi|94969581|ref|YP_591629.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551631|gb|ABF41555.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 551

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 28/240 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVM 50
            K +  +   +  + A+  L   + HD  + +G I    ELL E            DE++
Sbjct: 170 RKRLEESFYQAQKMEAVGRLAGGVAHDFNNMLGVISAYAELLREEPSLSLRASKRVDEIL 229

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              + ++      L F R       ++D    +  ++ +++  +  D R+ V  T +   
Sbjct: 230 SATQRANALTRQLLAFSRKQVISPTTLDLNAVVYGVKDMLQRLVGEDVRISVMATPKLPP 289

Query: 111 LSRER---AKILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGN 156
           +  +R    ++LLN    +  ++P+                +    + +     +   G+
Sbjct: 290 IKADRGQLEQVLLNFAANSRDAMPKGGRFTLRTSLEPAPADLPRPLTGDCVCLEVSDTGD 349

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE    I +    +        +    V  +  +    +  E            L 
Sbjct: 350 GM-SPEVMKHIFEPFYTTKSSGKGTGLGLATVYGVVEQAHGTIRVESAPGKGTTFRVYLP 408


>gi|167461347|ref|ZP_02326436.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 464

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 68/222 (30%), Gaps = 19/222 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSMSAIIRLK 65
           +  L  L  + + I H+I +P+ +I   ++LL     +       +        A   + 
Sbjct: 230 NDKLAMLGKIAAAIAHEIRNPLTSIRGFIQLLQPELSKLGKEDYGKIIIDEIDRANDIIY 289

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKILL 120
               +   T  V   I +  + + +             +++++     + +  +  ++  
Sbjct: 290 EFLNSSKPTKPVKQKILISSLLKEVVMLFESEALLRGCQIKITEADSDLWVRVDTKQLKQ 349

Query: 121 NLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +   ++         + G + I  +  + +    ++ NG          ++ D   
Sbjct: 350 VFSNLVKNAVEILTASGEGQQGMIEIKAKKKEKQAFIQVRDNGPGMDEHTLS-RLFDPFF 408

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +   +       +   +   ++ E       V +  L 
Sbjct: 409 TTKEEGTGLGLSVSYNIIKNHGGTIVAESEKGRGTVFNIELP 450


>gi|149917886|ref|ZP_01906381.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF and PAS/PAC sensor [Plesiocystis
            pacifica SIR-1]
 gi|149821406|gb|EDM80808.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF and PAS/PAC sensor [Plesiocystis
            pacifica SIR-1]
          Length = 1891

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 66/234 (28%), Gaps = 24/234 (10%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--- 60
                    ++ +  L S + H+I +PI  I +  ELLDE   + EV+    L        
Sbjct: 1651 TQLRQQQRLEAIGTLASGVAHEINNPIQGILSYAELLDEDRDKPEVVGEFALEIRRESER 1710

Query: 61   -----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKID 110
                    L F R              + D    +        RV++             
Sbjct: 1711 VATIVRDLLTFSRSEERQPFEAVRFASVLDSMMTLLRVTLEHDRVELRIVGLEQAPSLRC 1770

Query: 111  LSRERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              ++  ++L+NL   A  +L                   +  N     ++ NG     PE
Sbjct: 1771 RPQQLRQVLINLITNARDALNSADTGEGAPKAIEVRVTSERPNWLTIRVEDNGPGI-PPE 1829

Query: 163  KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I D    +    +   +       +  E+  +L  +            L 
Sbjct: 1830 VLPRIFDPFYTTKGRHEGTGLGLALSHGIVSEHGGQLSVDSPPGRGACFRIDLP 1883


>gi|298480341|ref|ZP_06998539.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298273622|gb|EFI15185.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 936

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           A++    +  +    L  + + H+I +P+ AI    +LL   +E+    E ++++R ++ 
Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 757

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
             +  +                  G VD  +   DI + +      +  +          
Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 817

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +    E  F ++  G      +     
Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 876

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924


>gi|295086635|emb|CBK68158.1| GAF sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 926

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           A++    +  +    L  + + H+I +P+ AI    +LL   +E+    E ++++R ++ 
Sbjct: 690 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 747

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
             +  +                  G VD  +   DI + +      +  +          
Sbjct: 748 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 807

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +    E  F ++  G      +     
Sbjct: 808 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 866

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 867 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914


>gi|294646444|ref|ZP_06724085.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|292638215|gb|EFF56592.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
          Length = 957

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           A++    +  +    L  + + H+I +P+ AI    +LL   +E+    E ++++R ++ 
Sbjct: 721 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 778

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
             +  +                  G VD  +   DI + +      +  +          
Sbjct: 779 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 838

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +    E  F ++  G      +     
Sbjct: 839 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 897

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 898 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 945


>gi|293373605|ref|ZP_06619953.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294809416|ref|ZP_06768121.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292631430|gb|EFF50060.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|294443352|gb|EFG12114.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 936

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           A++    +  +    L  + + H+I +P+ AI    +LL   +E+    E ++++R ++ 
Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 757

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
             +  +                  G VD  +   DI + +      +  +          
Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 817

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +    E  F ++  G      +     
Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 876

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924


>gi|237714293|ref|ZP_04544774.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408330|ref|ZP_06084877.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229445785|gb|EEO51576.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353882|gb|EEZ02975.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 926

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           A++    +  +    L  + + H+I +P+ AI    +LL   +E+    E ++++R ++ 
Sbjct: 690 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 747

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
             +  +                  G VD  +   DI + +      +  +          
Sbjct: 748 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDDHLPVCH 807

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +    E  F ++  G      +     
Sbjct: 808 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 866

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 867 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914


>gi|194014833|ref|ZP_03053450.1| sporulation sensor histidine kinase E [Bacillus pumilus ATCC 7061]
 gi|194013859|gb|EDW23424.1| sporulation sensor histidine kinase E [Bacillus pumilus ATCC 7061]
          Length = 731

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------V 49
            K +   +   D   +V  L + I H+I +P+ A+   ++LL      +           
Sbjct: 496 RKELEERVRKSDTLHVVGELAAGIAHEIRNPMTALKGFIQLLKGNIEGEYSLYFNVITSE 555

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-K 108
           ++ I       +I  K   + F     V  +    D+     +   V   + V       
Sbjct: 556 LKRIESIITEFLILAKPQAIVFEEKNVVQIVKDTMDLLHAQANLGNVQMHLNVIDEIPLI 615

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A   +PR G V +S+Q       + SL+  G      +K  ++
Sbjct: 616 YCEQNQLKQVFINILKNAIEVMPRKGNVYVSIQRKGEEHIVISLRDEGCGM-AEDKLRRL 674

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +  E++  +  E  +    V    L 
Sbjct: 675 GEPFYTTKERGTGLGLMVSYKIIEEHQGTIEVESEEGVGTVFHLTLP 721


>gi|222152721|ref|YP_002561898.1| sensor histidine kinase [Streptococcus uberis 0140J]
 gi|222113534|emb|CAR41324.1| sensor histidine kinase [Streptococcus uberis 0140J]
          Length = 452

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 69/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115
           +    T     +         I +                 +   +    + L  +    
Sbjct: 271 IDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVSGKSYEIIRDYPITSVWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+ + ++ + ++ I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKIRVKMKTTDSQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIVKQHNGFIWAKSDYGKGSTFTIVLP 434


>gi|86157703|ref|YP_464488.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774214|gb|ABC81051.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 630

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 67/232 (28%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQ 51
            ++      +  L ++  + + + H++ +P+  I     L          +     + + 
Sbjct: 396 ERSERQLRETEKLASIGEMAAGLAHELNTPLSNIRALASLAKRDLEAGPADPRALSQDLA 455

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSW 104
            +   +      ++ +           +   +  + Q       +  +   V    Q   
Sbjct: 456 DVTEQTRRCSAIIQGLLRFARRQPPALAAHDVDALVQGALELVRLRAEGKGVALAFQPGP 515

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +  + +  ++ +NL + A  +   GG+V IS   +       +  +G     PE  
Sbjct: 516 ARPTVVDAAQLEQVFVNLLLNAIDASGPGGRVEISTAAADGRVSVRVTDHGPGI-APEHL 574

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   +   L  +         +  L 
Sbjct: 575 PRIFDPFFTTKEVGQGTGLGLSVSYGIVRSHGGALRVDSAPGRGATFTVELP 626


>gi|298291177|ref|YP_003693116.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
 gi|296927688|gb|ADH88497.1| integral membrane sensor signal transduction histidine kinase
           [Starkeya novella DSM 506]
          Length = 884

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 65/228 (28%), Gaps = 18/228 (7%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
                  +  L A+  L + + H++ +P+G + +S+ +L      +     + +  I+ +
Sbjct: 648 TRAELTRTERLAAIGQLTATVSHELRNPLGTLMSSVAVLKRTGKFDSHDVHDEIDRIQRN 707

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
               +  ++ +             + L          +     V +        +     
Sbjct: 708 VRRCVRIIEDLLEFSRRPNVSMVPLALDAWIIEHLTDLKSLSPVHLELHLGCDRMIEADG 767

Query: 114 -ERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLARFPEKFTQ 166
               ++L+N+   A  ++          +         +    ++  NG      E   +
Sbjct: 768 ERLRQVLVNVVQNAMQAVQECPSAARPGKVTIATACEDDRVCITVSDNGIGM-SEEVQAR 826

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +      +    V  +   +   +    ++     +   L 
Sbjct: 827 LFEPLFSTKPFGLGLGLALVRRIVERHGGSVRITSVEQEGTCVEIRLP 874


>gi|298387678|ref|ZP_06997229.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
 gi|298259534|gb|EFI02407.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 1_1_14]
          Length = 921

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 15/228 (6%), Positives = 59/228 (25%), Gaps = 14/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +  +      S  L +   + + H+I +P+ AI     L+ E           +++  ++
Sbjct: 524 LQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESENKEERKTFYEIVEANN 583

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +  +            +    +  ++      ++            ++    +   +
Sbjct: 584 ERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQGVQLIYEPSENGL 643

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167
            +  ++ ++      +   +       +IS       N+ +F +   G      +     
Sbjct: 644 VIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVF 703

Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +       +       +    +       +  L 
Sbjct: 704 ERFAKLNNYAQGTGLGLSICKTIVERLGGEISVSSVVGQGTTFTFTLP 751


>gi|253568043|ref|ZP_04845454.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
 gi|251842116|gb|EES70196.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 1_1_6]
          Length = 939

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 15/228 (6%), Positives = 59/228 (25%), Gaps = 14/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +  +      S  L +   + + H+I +P+ AI     L+ E           +++  ++
Sbjct: 524 LQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESENKEERKTFYEIVEANN 583

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +  +            +    +  ++      ++            ++    +   +
Sbjct: 584 ERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQGVQLIYEPSENGL 643

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167
            +  ++ ++      +   +       +IS       N+ +F +   G      +     
Sbjct: 644 VIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVF 703

Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +       +       +    +       +  L 
Sbjct: 704 ERFAKLNNYAQGTGLGLSICKTIVERLGGEISVSSVVGQGTTFTFTLP 751


>gi|229101139|ref|ZP_04231905.1| hypothetical protein bcere0019_3260 [Bacillus cereus Rock3-28]
 gi|228682267|gb|EEL36378.1| hypothetical protein bcere0019_3260 [Bacillus cereus Rock3-28]
          Length = 672

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNAIIHDITPLIKIDTHNQNKYIQVDTTDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|154490162|ref|ZP_02030423.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
 gi|154089054|gb|EDN88098.1| hypothetical protein PARMER_00394 [Parabacteroides merdae ATCC
           43184]
          Length = 798

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 62/230 (26%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +     L  +    L  + + H+I +P+ AI     LL   D+   + + +++I+ ++ 
Sbjct: 573 QREKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSTLLVDTDDPEEKKQFVEIIQKNNE 630

Query: 59  SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +  +                     +    L    ++          V    +  
Sbjct: 631 LLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMRIKVPAEVALCVVPDLPSYI 690

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +I+ N    A     +G  +            FS+   G+    PE    +
Sbjct: 691 MRCDKVRLTQIISNFINNAIKHTSKGTILLGYEIRWDE-IEFSVTDTGDGM-SPEVQRHV 748

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D   +         +       +  +   ++  E            L +
Sbjct: 749 FDRFYKGNSFKQGTGLGLSICKSIIEQVGGKIGVESEIGKGSRFWFTLPR 798


>gi|94263541|ref|ZP_01287352.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
 gi|93456074|gb|EAT06221.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
          Length = 579

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 75/227 (33%), Gaps = 16/227 (7%)

Query: 2   AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQL 52
            K       +  L A   L + + H+I +P+G I     L+                ++ 
Sbjct: 340 KKRHELYCRTEKLAATGQLAAGVAHEINTPLGNIIGYAGLIKPDADPGANAERVAIIIEQ 399

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDKRVQVSWTGEKI 109
            R  S      L + R +      VD    +     + ++  D   +   +  +      
Sbjct: 400 ARKCSHIIRGLLDYARSSATTPSPVDLNALVRRVVEMLRLQLDKKEITLELHCAVLPVFA 459

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              R+  ++++NL + A  ++  GG++ +    ++   +  ++ +G      E  ++I D
Sbjct: 460 ADERKVEQVVMNLLLNAIQAVAPGGRIELQTWSTEKRVLLKIRDSGPGI-SEEMQSRIFD 518

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +   +       +  E +  +  E  D      +  + 
Sbjct: 519 PFFTTKPVGEGTGLGLAICAGIIAELQGSIDLES-DGEGTSFTVNIP 564


>gi|29346593|ref|NP_810096.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29338489|gb|AAO76290.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1336

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 15/228 (6%), Positives = 59/228 (25%), Gaps = 14/228 (6%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
            +  +      S  L +   + + H+I +P+ AI     L+ E           +++  ++
Sbjct: 921  LQTSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSHLIAESENKEERKTFYEIVEANN 980

Query: 58   MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
               +  +            +    +  ++      ++            ++    +   +
Sbjct: 981  ERLLQLINEILDLSKIESGIIEFTSAPININSLCKEVHDAHVFRTPQGVQLIYEPSENGL 1040

Query: 110  DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167
             +  ++ ++      +   +       +IS       N+ +F +   G      +     
Sbjct: 1041 VIETDKNRVFQVFSNLIGNAFKFTKAGSISYGYKLVGNQIVFHVTDTGTGIEPEKIGRVF 1100

Query: 168  VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +       +       +    +       +  L 
Sbjct: 1101 ERFAKLNNYAQGTGLGLSICKTIVERLGGEISVSSVVGQGTTFTFTLP 1148


>gi|330684530|gb|EGG96241.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Staphylococcus epidermidis VCU121]
          Length = 506

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    +  + +I   S    
Sbjct: 276 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEDSLNMFLNIILKESNRIE 335

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +      D  Q       +     +         
Sbjct: 336 SLVMDLLDLSHIEQQNEITTSYMNLSELAYTTIDNLQNQAQNKNITIESNIEQDVIFKAN 395

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             + A+++ NL   A        KV +SV     +    ++  G      E    F +  
Sbjct: 396 ENKIAQVITNLLSNAINYSTNDNKVIVSVYREGKKVNLEIQDFGIGISAEEQKHIFERFY 455

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+      +        
Sbjct: 456 RVDKARSRDSGGTGLGLSITKHIVEAHNGRISVVSRLNEGSTFKVT 501


>gi|295400135|ref|ZP_06810115.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977914|gb|EFG53512.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 376

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M KN        +L   L SR+ H++ +P+  I    +LL+     +   Q    + ++ 
Sbjct: 1   MRKNAQKKRIRQNL--ELISRMSHELRTPLNGILGFAQLLEMDESLNSQQQEFVQAILNG 58

Query: 61  IIRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKRVQVSW 104
              L  +         ++                    +  IE +               
Sbjct: 59  ARHLLNLVNEMLDIARIETGEIQLAYDLIKLGSVIDESVKLIEPLAGKRNIKIVNQTQLD 118

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  S    +ILLNL   A       G VT++ +         +K +G      E +
Sbjct: 119 KYYVYTDSTRLRQILLNLLDNAVKYNRDNGTVTLTSRSEGGNICIHIKDSGIGIPKNE-Y 177

Query: 165 TQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I         + +D   +    V  L       +  E            L 
Sbjct: 178 ENIFAPFYRIKGTKVDGTGMGLSLVKQLIQLMGGTIGVESEMGEGSDFWFSLP 230


>gi|258516237|ref|YP_003192459.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779942|gb|ACV63836.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 496

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 63/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKF------ 66
             + + H++ +P+  I    E L +          + +  +   S      +        
Sbjct: 270 FVANVSHELRTPLTIIQGYTEALLDGFAETEEERQQYLNNVLEESQRLQRLVNDVLDLRS 329

Query: 67  --MRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERA---KILL 120
                   Y   VD    L  +  + + F       + +S       +  +     ++ +
Sbjct: 330 LESGKMVLYKQKVDLTKLLAKVAGIFKPFYAQKQVFLSLSAEEVWEAVYADPDRLEQVFV 389

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           NL   A    P GG+V IS     ++   ++K +G      +    + +    +      
Sbjct: 390 NLIDNALRHTPAGGEVKISSALETDKVFVTVKDSGPGISSKDLPLIWERFYKVDKARSRG 449

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +       +   +   +          V++  L 
Sbjct: 450 GEGSGLGLAITKAIIDAHGGWVEVTSEPGRGTVMTVCLP 488


>gi|78355552|ref|YP_387001.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217957|gb|ABB37306.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 498

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
             N+   L  S  + A+  L + I H+I +P+ AI      LL    ++D   +  R+  
Sbjct: 260 RTNMERKLHQSEKMAAIGELATYIAHEIRNPLFAIGGFANALLRSPSLDDNAREKARIIL 319

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------VSWTG 106
             +      +R    +    D   G  D+  ++ D + + +                   
Sbjct: 320 EESRRLDTILRSTMNFAKPSDPRRGDVDMNHIVRDTMWLMRLNDEKRSITTGVDLTEPLP 379

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +    + L+NL   A  ++PRGG +T+     +      ++  G      E    
Sbjct: 380 LARGDADMTKQCLINLVKNAQEAMPRGGSLTVRTGMKQRGIFIQVEDTGTGI-PEEIREN 438

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       L  E    +  +  +     ++  L+
Sbjct: 439 VFSPFFSTKDKGAGLGLAMTKKLIEEMGGAVELQTAEGKGTSVTLFLQ 486


>gi|37519592|ref|NP_922969.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210583|dbj|BAC87964.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 508

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 68/231 (29%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSR---IC---HDIISPIGAIHNSLELL-DEVGIEDEVMQLI 53
           +A      L  ++      S+   I    H++ +PI  +   LELL D+ G   E M ++
Sbjct: 254 LAATFNQMLDRLEAA--FASQRNFISDAGHELRTPITIVRGHLELLGDDPGERAETMAIV 311

Query: 54  RLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                             +  R  F +    D      ++          +  ++   +G
Sbjct: 312 YDELDRMNRFVDDLLLLARAERPDFLFFELFDVGELTDELYAKARALAPREWSIEARGSG 371

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
             +   +   + ++NL   A      G ++ I            +   G      +    
Sbjct: 372 RMVADRQRLTQAVINLAQNAVQHTAPGDRIAIGSALRGVWVYLWVSDCGPGIAPEDQRRI 431

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   G+     +   +    V  +A  +   +    +       + +L 
Sbjct: 432 FERFERGSHSR-YEGSGLGLAIVQAIATTHGGSIQLTSVPGAGATFTLVLP 481


>gi|152977664|ref|YP_001377181.1| multi-sensor signal transduction histidine kinase [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152026416|gb|ABS24186.1| multi-sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 619

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIRLKFMR 68
             + + H++ +P+  + + LE L +   +D  +         +            L+  +
Sbjct: 392 FVANVSHELRTPLTTMRSYLEALSDGAWKDPNIAPQFLTVTQEETERMIRLVNALLQLSK 451

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDLSRERAKILLN 121
           +       +   +   +    + D   + K   V +              + +  ++L N
Sbjct: 452 MDSTEYRLMKEWVDFTEFFNNVIDRFEMSKEQNVIFNRSFSKKARFVDMDTDKITQVLYN 511

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GG +T  ++D  +    S+   G      E   +I +            
Sbjct: 512 VISNALKYSPEGGTITYRLRDRGDMLEISVSDQGMGI-PKENVDKIFERFYRVDKARSRQ 570

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  +  +     +   L 
Sbjct: 571 MGGTGLGLAIAKEMIIAHGGSIWAKSEEGKGTTIYFTLP 609


>gi|150016010|ref|YP_001308264.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149902475|gb|ABR33308.1| multi-sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 568

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 16/218 (7%), Positives = 56/218 (25%), Gaps = 17/218 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLK----- 65
           + +   + + H++ +P+ +I    E L    +    ++ + +I   +      +      
Sbjct: 349 MRSQFVANVSHELKTPLTSIKGFAETLKFVKDDETREKFLDIIDKEAERLSRLINDILVL 408

Query: 66  -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 + +          +  + +I +       +    + + + +      +  ++ L
Sbjct: 409 SNIESNLAVDMHEFEPGSVIEEVINIMRKTAINKNIKLEFKDNNSEKIFGDRDKFHQLAL 468

Query: 121 NLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
           NL   A                +        +K NG      +    F +    +     
Sbjct: 469 NLIENAIKYSKDTSGKVEVLSYNEDKYYCLRVKDNGIGIPKEDISRIFERFYRVDKSRKK 528

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +       +  +            + 
Sbjct: 529 GGTGLGLAIVKHIVKIFNGEIYVKSELGVGTCFEVKIP 566


>gi|329965407|ref|ZP_08302331.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328522199|gb|EGF49313.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 894

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 61/228 (26%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     ++ E    DE +    + +++  
Sbjct: 501 AKEKAEASDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESTDADERLNYYEIVAVNNE 558

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                             +       V       +I             +    + E I 
Sbjct: 559 RLLQLINEILDLSKIEAGIVEFTITPVRLHSLCKEIYDAHVFRCPQGVELIYESSDEGIV 618

Query: 111 LSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  ++ ++   +  +   +        ++       +  +F +   G+     +K  +I 
Sbjct: 619 IDGDKNRLFQVVSNLIGNAFKFTTNGKISYGYHREGDYVVFHVNDTGSGI-AADKLDRIF 677

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  V   +      +       +       +            + +L 
Sbjct: 678 ERFVKVNTFAQGTGLGLSICKTIIERMGGNISVSSEIGKGTTFTFILP 725


>gi|328952020|ref|YP_004369354.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
 gi|328452344|gb|AEB08173.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
            11109]
          Length = 1352

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 69/243 (28%), Gaps = 32/243 (13%)

Query: 4    NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
                 L  +D L     + + H++ +P+ +I    +LL +         + + +  +  +
Sbjct: 845  EANRALKELDRLKTEFLANVSHELRTPLNSILGYTQLLLDGVDGAINEDQQKSLLRVEKA 904

Query: 57   SMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            S   +  +             + L        + L     + + +     +  +V+ S  
Sbjct: 905  SNRLLQLINDVLDLSKLRAGRLELNAQKEDLHEILSEALQVVEPLARAKEISLKVEESEV 964

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---------VQDSKNENIFSLKINGN 156
               I    +  ++LLNL   A       G +TI+             K+     +   G 
Sbjct: 965  PPVIVDRDKIIQVLLNLLSNAVKFTDSHGLITINLNTVSLPESHGLIKDYAAVRISDTGI 1024

Query: 157  LARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              +  +      +      +         +       L   +  R+  E         + 
Sbjct: 1025 GIKEDDLQNIFQEFVQIDSSATRRHGGTGLGLPISRHLVEMHGGRIWVESEYGKGSTFTF 1084

Query: 212  LLE 214
            +L 
Sbjct: 1085 ILP 1087


>gi|298676132|ref|YP_003727881.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298289120|gb|ADI75085.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 995

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 62/244 (25%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL------DEVGIED 47
            K     L +  L A         L + + H++ +P+ +I    +++      D    + 
Sbjct: 744 RKQAEEKLINAKLEAEAANQAKSELLANVSHELRTPLTSIIGFSDVILKRKVGDLNDNQT 803

Query: 48  EVMQLIRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
             +  I  S    +  +  +                      +      ++         
Sbjct: 804 RYLDKIHKSGQHLLDLINDILDLAKIESGKLELHREKISIPALLNDLESKLYPFASKKGL 863

Query: 99  RVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            +          +  +     +IL NL   A     +G       Q +     FS+   G
Sbjct: 864 SLDSEIDPNIEYIYADEIKLRQILYNLIYNAIKFTNKGSVTVTVRQKNDAY-QFSVIDTG 922

Query: 156 NLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 ++       + +D           +    V  L   +  ++  E  +      +
Sbjct: 923 IGIPEDKQDEIFESFRQLDTGASRRYAGTGLGLALVKRLVEIHGGQIWVESEESKGTTFT 982

Query: 211 ALLE 214
             + 
Sbjct: 983 FTIP 986


>gi|317128903|ref|YP_004095185.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473851|gb|ADU30454.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 524

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----------IEDEV 49
           + K I   L  ++LV  + + I H+I +P+  +   L+L                +  E 
Sbjct: 294 LEKEIS-RLDRLNLVGEMAAGIAHEIRNPMTTVLGFLQLSKSEQHKTSPTNDYINLMIEE 352

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +          +   K              +  L  + Q        + ++ +S      
Sbjct: 353 LNRANGIITEYLSLAKDKISHKKVQDLNTVVRALTPLLQAEALMENKNVKLNLSDCPHVY 412

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +E  +++LN+ M    ++   G +TI       E +  ++  G      E  + I  
Sbjct: 413 IDEKEIRQLILNIGMNGLEAMEETGVLTIKTYTENEEIVLEIEDEGAGI-KEEIISDIGT 471

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +  +   +       +A  +   +  E   D          K
Sbjct: 472 PFFTTKENGTGLGLAICYSVAQRHSANIDIESNKD-GTTFLIRFPK 516


>gi|218901525|ref|YP_002449359.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218537648|gb|ACK90046.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 672

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVHTNDVPALLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661


>gi|134299413|ref|YP_001112909.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052113|gb|ABO50084.1| GAF sensor hybrid histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 1021

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 64/229 (27%), Gaps = 20/229 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++I        + +   S + H++ +P+ +I    ELL           +  + I   + 
Sbjct: 600 RDITIEAEVDRMKSEFVSTVSHELRTPLSSILGFSELLLIKKLSEEARTKYTKTIHKEAK 659

Query: 59  SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +            +  +     +   +    +E      +  D  +Q        
Sbjct: 660 RLTDLVNDFLDLQRMELGKQVYDKEDFIALDLLAEVVESFAASGVDHDITLQTVERFFIN 719

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++L+NL   A    P+G K+T+ V   +    F +K  G      +    +  
Sbjct: 720 ADKERVTQVLINLLSNAVKFSPKGTKITLGVTPDEEYAKFFIKDQGLGI-PKDVQDNLFS 778

Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                       I    +       +   +  ++  E    H  V    
Sbjct: 779 KFYRVDNSDRRKIGGTGLGLSICKEIVEAHGGKIWVESEHGHGSVFYFT 827


>gi|229171167|ref|ZP_04298761.1| hypothetical protein bcere0006_2970 [Bacillus cereus MM3]
 gi|228612345|gb|EEK69573.1| hypothetical protein bcere0006_2970 [Bacillus cereus MM3]
          Length = 670

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNAIIHDITPLIKIDTHNQNKYIQVDTTDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS      N  + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGRNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|257785146|ref|YP_003180363.1| histidine kinase [Atopobium parvulum DSM 20469]
 gi|257473653|gb|ACV51772.1| histidine kinase [Atopobium parvulum DSM 20469]
          Length = 501

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA ++  ++    L   L S + H++ +P+ AI  ++E + +     ++E ++ I   S 
Sbjct: 256 MASSLERDI---KLERRLTSDVAHELRTPLMAIMATVEAIQDGILPADEERLENIVSESR 312

Query: 59  SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------QVSW 104
                +  M                SV+ +  +  I  + E     + R           
Sbjct: 313 RLSRLVDAMLHLSRLENGKTKFNPESVNVVAMVASIVAMQETLFKENNRTLTFVDKTPEG 372

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  S    + L NL   A      GG V I+V     + + S+  +G      +  
Sbjct: 373 NCFVDIDSDMIREALTNLLSNAIRYTDDGGHVVITVSIDNTDAVISVTDDGMGIAPEDIP 432

Query: 165 T---QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +                +       +   +   +  E         S  L 
Sbjct: 433 QTFSRFWRAEESRERASGGLGVGLAITKEIMDRHNGTISVESELGKGTTFSLYLP 487


>gi|212638881|ref|YP_002315401.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
 gi|212560361|gb|ACJ33416.1| Redox sensor histidine kinase ResE [Anoxybacillus flavithermus WK1]
          Length = 587

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 25/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAATDEEKKELAKVIYD 410

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSW 104
                       L   R+  G+       + L    + I                V+++ 
Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHLMLHHEQVPLKPYVERIIHKFQALAKEKGVHLLVEMND 470

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       ++L NL   A      GG+V + V   +     S++ +G+     +  
Sbjct: 471 ELIVSFDPDRVEQVLTNLIDNALRHTDEGGEVRVIVDADEEVVRISVQDSGSGIPEEDLP 530

Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +       +   +K  +            +  L 
Sbjct: 531 FVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTITVHSKLGEGTTFTFTLP 585


>gi|332143340|ref|YP_004429078.1| osmolarity sensor protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327553362|gb|AEB00081.1| osmolarity sensor protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 444

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 57/204 (27%), Gaps = 6/204 (2%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           ++ + I HD+ +P+  I  + E+L    +   +  V  +  ++++               
Sbjct: 232 IMTAGISHDLRTPLTRIRLASEMLPEDQDWIKDGIVNDIEDMNAIIDQFIDYARYDTEEV 291

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
           T   D    + ++ Q           ++++             +++ NL   A       
Sbjct: 292 TQETDLNTIIAELVQARHLDDKHHIELKLNTIPPLPLRRIAMKRVIDNLIENAFKYGSDE 351

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190
             ++      +      ++  G      E    F     G+         +    +  + 
Sbjct: 352 IAISSFYNRHEKRVYCKVRDFGPGIPHEELAGVFMPFAQGDKARNSSGSGLGLAIIRRII 411

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   +         +V    L 
Sbjct: 412 EAHDGEVTLRNHPQQGLVAEFYLP 435


>gi|312862820|ref|ZP_07723060.1| PAS domain S-box protein [Streptococcus vestibularis F0396]
 gi|311101680|gb|EFQ59883.1| PAS domain S-box protein [Streptococcus vestibularis F0396]
          Length = 446

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + +E+        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALHEEIAPNFIKVSLDETNRMMRMISDLLALSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115
           +    T     +         I +                 +   ++   I +  +    
Sbjct: 270 IDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNPGKFYEIIRDYSVNSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+S++ + ++ I S+   G      +    F +    + 
Sbjct: 330 TQVVDNILNNAIKYSPDGGKITVSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|300088232|ref|YP_003758754.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
 gi|299527965|gb|ADJ26433.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas
            lykanthroporepellens BL-DC-9]
          Length = 1149

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 23/233 (9%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            + +       S  L A+  + + I H+I +P+  +    ELL    D      E + +I 
Sbjct: 780  LREKAEM---SSRLAAVGEMAAGIAHEINNPLTGVIGFSELLMTRPDVPDDMKEDLHIIN 836

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              S      ++ M      +  V             +     V+E       R       
Sbjct: 837  EGSQRVKDIVRRMLTFARQSKPVKSAVNIIDVLENTIEMRRYVLETSNISIVRDYARDIT 896

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEK 163
            E +  + +  ++ LN+ + A  ++ +        +  + S       +  +G      E 
Sbjct: 897  EVVADAGQLQQVFLNIIVNAEYAMKKAHDKGVLVVKTEKSDGHIRVLITDDGPGM-SDEV 955

Query: 164  FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +++      +    +   +     + +  E+   +  + +          L 
Sbjct: 956  KSKLFQPFFTTKDPGEGTGLGLALSMGIIKEHGGSISVKTVVGKGTTFIVELP 1008


>gi|153006997|ref|YP_001381322.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030570|gb|ABS28338.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 311

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             L     +++ HD+ +P+ +I   +E L      +   + E +++I   +      +  
Sbjct: 69  AKLQTEFVNKVSHDLRTPLTSIRMFVETLQLGRIPDPARQREALEIISEETARLSGLINR 128

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----------- 115
           +           +   +      I D         +     ++D                
Sbjct: 129 LLDWARMESGRRTYQLVRQPLAPIVDAALEAFEAMLLQHAAEVDCHIAPALPLVMADREA 188

Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++ +L+L   AH       ++ + V+ S      S+  NG      E            
Sbjct: 189 LSEAILDLLQNAHKYTGPEKRIAVRVEASGPTVQISVTDNGPGIPEREHKRIFKKFYRAR 248

Query: 175 T-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 I+   +    V  +A+ +  ++       H    +  L 
Sbjct: 249 DPLSRTIEGTGLGLAMVKHIANGHGGKVSVASKVGHGATFTISLP 293


>gi|219849498|ref|YP_002463931.1| response regulator receiver sensor signal transduction histidine
           kinase [Chloroflexus aggregans DSM 9485]
 gi|219543757|gb|ACL25495.1| response regulator receiver sensor signal transduction histidine
           kinase [Chloroflexus aggregans DSM 9485]
          Length = 392

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 23/232 (9%)

Query: 6   CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAI 61
              L  +D +     + + H++ +P+ ++   LEL D      +  +  + IR+   S  
Sbjct: 160 NAQLQDLDRMKDQFLATLSHELRTPLTSLLGYLELFDRGMLGPLNPQQEEAIRVMRRSGE 219

Query: 62  IRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           I  + +              +F     +D L  L    +       +   V +S      
Sbjct: 220 ILARQLNNLLYFQEVRSRSFSFVQLQPLDILRPLIAAARERAAQAQLQFDVVLSEIKPIE 279

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++ NL   A    P GG+V + V+D     I  ++  G      E   +I  
Sbjct: 280 IDRSAFEQMVRNLLDNAFQYTPPGGRVRLIVRDEPTRLIIRVEDTGIGIAPAE-HEKIFL 338

Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +             +    V  +   +  ++            +  L +
Sbjct: 339 PFYQVDHSLARGYAGSGLGLAIVRHIVDAHGGQIALRSALGEGSAFTVALPR 390


>gi|302338223|ref|YP_003803429.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635408|gb|ADK80835.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 387

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 70/221 (31%), Gaps = 20/221 (9%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------LSSMSAIIRL 64
           +L +L  L + + H+I +P+G+I   ++L+      D  +          +         
Sbjct: 154 NLASLTTLAAGVAHEIKNPLGSIGIHIQLMQRSLDRDGCLDREHGLEYLDIMEEEVERLN 213

Query: 65  KFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSR 113
             +         +       D    + D+ Q  +  +       V        +     +
Sbjct: 214 GIVVDFLFAVRPMNTELKQADVNAVIHDLLQFTKYELQEGGVQVVEEYDDGVPKVELDEK 273

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              + LLN+   A A++P GG +T++     ++   ++   G      +   +I +    
Sbjct: 274 YLKQALLNIIKNAQAAMPDGGSLTVTTGFKDDQVTIAIADTGIGI-GEDMVGKIFEPYFT 332

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +    V  +  E+   +          V +  L 
Sbjct: 333 TKEFGSGLGLTVVYKIIKEHGGDISLRSKKGEGTVFTISLP 373


>gi|160933151|ref|ZP_02080540.1| hypothetical protein CLOLEP_01994 [Clostridium leptum DSM 753]
 gi|156868225|gb|EDO61597.1| hypothetical protein CLOLEP_01994 [Clostridium leptum DSM 753]
          Length = 898

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
            + I        L + L   I HD+ +P+ +I  +  +L E      E++  +L R    
Sbjct: 656 KQAIELETQQERLRSNLLRAISHDLRTPLTSISGNAGVLMEKSIVLDEEKKQELYRSIYD 715

Query: 59  SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +                       + +  +        D  A D  + V    + 
Sbjct: 716 DSMWLVNLTENLLSITRIENGTMHLQMGAELMDDVFQEALAHVDRQAKDHHISVELPDDL 775

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     ++++N+   A    P G  + +  +    +   S+  +G      E   
Sbjct: 776 LLAKMDVRLIVQVIINIVNNAIKYTPAGSHIILRAEKQGAKVAVSISDDGPGI-SDEAKI 834

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D    ++           +       +   +   +       H  + +  L 
Sbjct: 835 HLFDMFYTASQGKPDNRRGLGLGLNLCRSIVTAHGGEITVTDNIPHGSIFTFTLP 889


>gi|115375617|ref|ZP_01462874.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|310823166|ref|YP_003955524.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367393|gb|EAU66371.1| conserved hypothetical protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396238|gb|ADO73697.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 549

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 69/232 (29%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           +       ++S  + A   +  R+ H+I +P+  I  SLE L       +        + 
Sbjct: 317 LRSTTERLMASERIAAWQEVARRLAHEIKNPLTPIQMSLETLLAAQSAQDARFPALFRES 376

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +         + +     +          VD       +  +          +    T
Sbjct: 377 AGVVLEEVDRLRRIVDEFSRFARLPKPQLTPVDLSELTQSVLALYATPPPGITLLPTIQT 436

Query: 106 GEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEK 163
           G      R++  ++L+NL   A  +L   G         ++ + I  ++  G      E 
Sbjct: 437 GVVARADRDQLTQVLVNLVKNAEEALADKGGSVRVRVKGTQTDAIVEVEDTGPGIPL-EH 495

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++I +    +      +       +  E+  +L            S +L +
Sbjct: 496 RSRIFEPYFTTKQGGTGLGLAIAARILQEHGGKLEVGGEPGEGARFSLILPR 547


>gi|51893536|ref|YP_076227.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
 gi|51857225|dbj|BAD41383.1| two-component hybrid sensor and regulator [Symbiobacterium
           thermophilum IAM 14863]
          Length = 755

 Score =  122 bits (305), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 73/235 (31%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           ++I        +     + + H++ +P+ +I  +L L+      D      E++ + R +
Sbjct: 257 RDITKETELDRMKTEFIATVSHELRTPMTSIKGALGLVLGGAAGDLPPEARELLTIARNN 316

Query: 57  SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG- 106
           +   I  +  +         ++         + +    +E++       +  +       
Sbjct: 317 TDRLIRLINDILDISRIEAGKMEIRRAPLSPADVVRRAVEEMNAFARQRNITLTTDVPEG 376

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
               +  +    ++L NL   A    P+G +V I  +++ +   F +   G      +  
Sbjct: 377 LARVMADADRLHQVLDNLISNAIKFSPQGSEVLIRARETGDGVRFDVIDRGPGIPADQTG 436

Query: 163 -KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +       +  E+  ++  E         S  + 
Sbjct: 437 LIFERFYRVDNAASRKTGGTGLGLTICKAIVEEHGGQIWVESALGEGSTFSFTIP 491


>gi|229101411|ref|ZP_04232154.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
 gi|228681987|gb|EEL36121.1| hypothetical protein bcere0019_5890 [Bacillus cereus Rock3-28]
          Length = 428

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 67/219 (30%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L +    ++ ++ + +    +      ++  F   
Sbjct: 201 SEFLASVSHELRTPLTYVRGYADIALKDSTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 260

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS+T           +   ++++
Sbjct: 261 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERHIKVSFTCPPTLLVNLDEQRFEQVIV 320

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++ +G      +                 +
Sbjct: 321 NILNNAYRHSKEHSHINISVTEEYKHISITIEDDGEGIPPEDLPHIFDRFYRVDKARTRS 380

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVISEVDHGSCFTISLP 419


>gi|229155572|ref|ZP_04283680.1| hypothetical protein bcere0010_17650 [Bacillus cereus ATCC 4342]
 gi|228627890|gb|EEK84609.1| hypothetical protein bcere0010_17650 [Bacillus cereus ATCC 4342]
          Length = 299

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 65  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 121

Query: 57  SMSAIIRLKFMRL----AFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKI 109
           +       + +                   L    +   +  + +  +K +++    EK+
Sbjct: 122 TTRLSKLSQNLLKLTLLESEEYTPEKVNYRLDQQLKQIVLNSEPLWDEKEIELDLDLEKV 181

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI + + +      ++ +G      +    
Sbjct: 182 HITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYETLVEVRIRDSGIGISEEQKQHI 241

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  + +       + K
Sbjct: 242 FERFYKVDSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIPK 295


>gi|83415010|dbj|BAD80468.2| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 977

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +      L  + + H++ +P+ AI    E++ E   +   ++ +        
Sbjct: 467 AREQAEAANQAKSAFL--ANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKIN 524

Query: 62  IRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              K +                    Y  S      +  ++ +I+  I  ++   +    
Sbjct: 525 NAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCP 584

Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                      +  + LLNL   A       G + + V    ++ +F +  +G     PE
Sbjct: 585 ADIGLMTADVTKLRQTLLNLLSNASKFT-HQGTIQLQVAAQGDQVVFKVVDSGIGM-SPE 642

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +I +                 +              ++  E +       +  L +
Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 701


>gi|299145369|ref|ZP_07038437.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
 gi|298515860|gb|EFI39741.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. 3_1_23]
          Length = 808

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVNLVYESSDESLMI 553

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 611

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659


>gi|237667737|ref|ZP_04527721.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|237656085|gb|EEP53641.1| sensor histidine kinase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 562

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 19/218 (8%), Positives = 60/218 (27%), Gaps = 17/218 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           + +   + + H++ +P+ +I    E L    +    ++ + +I   +      +  + + 
Sbjct: 343 MRSQFVANVSHELKTPLTSIKGFAETLRIVDDSATREKFLDIIDKEAERLTRLINDILVL 402

Query: 71  FGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKID--LSRERAKILL 120
                ++ + +               V +     +  V+      +       +  +++L
Sbjct: 403 SNIESNLVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFEDNSSECILGDRDKFYQLVL 462

Query: 121 NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
           NL   A          V IS  +        ++ NG      +    F +    +     
Sbjct: 463 NLIENAVKYSKEKEGYVKISSHNDGGYYHLKIEDNGIGIPDEDISRIFERFYRVDKSRKK 522

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +       +  +            + 
Sbjct: 523 GGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 560


>gi|182418974|ref|ZP_02950230.1| sensory box histidine kinase [Clostridium butyricum 5521]
 gi|182377257|gb|EDT74825.1| sensory box histidine kinase [Clostridium butyricum 5521]
          Length = 572

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 19/218 (8%), Positives = 60/218 (27%), Gaps = 17/218 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           + +   + + H++ +P+ +I    E L    +    ++ + +I   +      +  + + 
Sbjct: 353 MRSQFVANVSHELKTPLTSIKGFAETLRIVDDSATREKFLDIIDKEAERLTRLINDILVL 412

Query: 71  FGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKID--LSRERAKILL 120
                ++ + +               V +     +  V+      +       +  +++L
Sbjct: 413 SNIESNLVADVEEFRPGIVIEETLNIVRKTARNRNVSVEFEDNSSECILGDRDKFYQLVL 472

Query: 121 NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
           NL   A          V IS  +        ++ NG      +    F +    +     
Sbjct: 473 NLIENAVKYSKEKEGYVKISSHNDGGYYHLKIEDNGIGIPDEDISRIFERFYRVDKSRKK 532

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +       +  +            + 
Sbjct: 533 GGTGLGLAIVKHIVKIFNGEINVKSKLGEGTTFEVKIP 570


>gi|218901846|ref|YP_002449680.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218537537|gb|ACK89935.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 461

 Score =  122 bits (305), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|307725685|ref|YP_003908898.1| histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586210|gb|ADN59607.1| histidine kinase [Burkholderia sp. CCGE1003]
          Length = 585

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 73/264 (27%), Gaps = 50/264 (18%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISP------------------IGAIHNS---- 36
           +A+     L S  L ++  L + + H+I +P                  + A+       
Sbjct: 312 LAQAHSQLLQSEKLASIGQLAAGVAHEINNPVGFVNANLGTLQRYVADLLTALAAYERTE 371

Query: 37  LELLDEVGIEDEVMQLIRLSS-----------------MSAIIRLKFMRLAFGYTGSVDS 79
            EL+ E       ++                             ++ ++       +   
Sbjct: 372 AELIAESRATLAALKREIDIDYLRTDIPALLSESVEGLQRVKRIVQGLKDFSHVDKAEKQ 431

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEK------IDLSRERAKILLNLFMVAHASLPRG 133
              L        D +  + + +     E         +  + +++ +NL M A  S+   
Sbjct: 432 WANLESNLDTTIDVVWNELKYKAELEREFGAIPELECIPSQLSQVFMNLLMNAAQSIEGH 491

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAH 191
           G++T+     ++     ++  G     PE   +I D    +        +       +  
Sbjct: 492 GRITVRTGHDESTVWVEIEDTGQGI-KPEHRDRIFDPFFTTRPVGTGAGLGLSISYGIVR 550

Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215
           +   R+              +L K
Sbjct: 551 KQGGRIEVRSQVGQGSTFRVILPK 574


>gi|291287528|ref|YP_003504344.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884688|gb|ADD68388.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 472

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 60/239 (25%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50
           +A++    +  +     L +     + H++ +P+ +I  + E+L       +    + ++
Sbjct: 231 LAEDFSVMVHRLKENDELRSEFIGNVSHELRTPLTSIREASEMLKEEYFRGDKETSNNLL 290

Query: 51  QLIRLSSMSAI------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
            +I   S   I               K             +   +     + E       
Sbjct: 291 NIISSESDRMINSVNNILEITRLDMAKEYYDFEQTDIGKIAHSAIEKTAPIAERRNITVT 350

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            +      + +    + A + +NL   A     +   VTIS           +K  G   
Sbjct: 351 SLISKGEVQALVDVEKIAVVFVNLLGNALKYSDQNTHVTISADRCGEFLCVCVKDEGIGI 410

Query: 159 RFPEKFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E               +      +       +   +   +  E            L
Sbjct: 411 SQDELSKIFERYRLGSNRSTEYKGTGLGLAICKKIIERHGGEIWAESSKGEGTRFYFTL 469


>gi|322420177|ref|YP_004199400.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
 gi|320126564|gb|ADW14124.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter sp. M18]
          Length = 361

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 74/231 (32%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII----- 62
            +  L +L  L + + H+I +P+G I  + +LL+    ++E ++      +  +      
Sbjct: 129 QADRLSSLGALAAGLAHEIKNPLGGIKGAAQLLEMEFPDNEDLREYVRVMLKEVQRVNLI 188

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRER--- 115
               L          G V+    L DI  + ++     +  +Q  +      +  +    
Sbjct: 189 VEELLGLASPGRLKLGKVNLHRVLSDIVLLQKNACEGKELYLQQYFDPSIPPILADESLL 248

Query: 116 AKILLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFPEK 163
            ++ LNL   A  ++  GG             +T   +         +  NG      + 
Sbjct: 249 TQLFLNLIKNAMEAVGTGGVIKVTSRVLADYSMTQKGERRARMVAIDISDNGPGI-PADV 307

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +      +       +A E++  +  +       V + +L 
Sbjct: 308 LENMFTPFFTTKSQGTGLGLAICQKIASEHRGMIRVDSDPSRGTVFTVMLP 358


>gi|189468086|ref|ZP_03016871.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
 gi|189436350|gb|EDV05335.1| hypothetical protein BACINT_04480 [Bacteroides intestinalis DSM
           17393]
          Length = 928

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 55/229 (24%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     LL E    +E ++  ++   +  
Sbjct: 701 AKEKAEEADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLVETEDPEEKLEYAKMVEENNE 758

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                   F           L    Q+                  
Sbjct: 759 LLLQLISDILDLSKIEAGTFDFKFRDFDINTLCGDLVRSMQLRVKPGVELIFESTLPQCV 818

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       +++ N    A      G       +         +   G     PE   +I
Sbjct: 819 IVSDPNRLHQVVSNFINNAIKFTTTGSIRIGYDKPDDKHLRVYVTDTGIGI-APEACRKI 877

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D  +   S +    +       +  +    +              +L 
Sbjct: 878 FDRFIKLNSFVQGTGLGLSISKSIIEQLGGTIGVNSELGKGSTFWFILP 926


>gi|160877556|ref|YP_001556872.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS195]
 gi|304412004|ref|ZP_07393614.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS183]
 gi|307305899|ref|ZP_07585645.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica BA175]
 gi|160863078|gb|ABX51612.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS195]
 gi|304349554|gb|EFM13962.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS183]
 gi|306911392|gb|EFN41818.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica BA175]
 gi|315269754|gb|ADT96607.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS678]
          Length = 717

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 457 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 516

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K+      +++ 
Sbjct: 517 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 576

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++               QD        ++  G+   
Sbjct: 577 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDMPIGVKIEVEDEGSGI- 635

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+  +I D    +  D   +       +       +          + +  L
Sbjct: 636 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTLFTIGL 689


>gi|327438201|dbj|BAK14566.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 529

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 75/228 (32%), Gaps = 19/228 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
               + S  L A+  + + + H+I +P+ +I   LE+       +   + E  ++I    
Sbjct: 301 ERQLMLSEKLSAIGKISAGLAHEIRNPLTSIIGLLEVFKVNLKTDNDKQKEYFRIIFSEL 360

Query: 58  MSAIIRLKFMRLAFGYTGSV---------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 ++   +                 + +  +  + +       +    Q ++  + 
Sbjct: 361 ERIKNLVQQFVMMAKPDAKEVSKSRVSIHEIIEDILTLMENDFKNKNIKVHYQATFKNKI 420

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +  ++ LN+   +  ++   G ++I  +   S  E   +++ +G+     +   +
Sbjct: 421 NVDKDKIKQVFLNVLQNSFEAIDFEGNISIAVNQNQSDGEVEITIRDDGSGM-DKDTLEK 479

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +   ++ R+  +   +   + +  L 
Sbjct: 480 LSTPFHSTKKSGLGLGLSMSYHIIELHRGRIKVKSEKEKGTIFTIWLP 527


>gi|268325504|emb|CBH39092.1| putative histidine kinase [uncultured archaeon]
          Length = 476

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 3   KNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           K +      +     L +   S + H++ +P+ A+  S ++L+        + E++ +I 
Sbjct: 236 KELALANERLKELDRLKSDFVSMVSHELKTPLTAMRTSAQVLEAAGIATETKREMLDIIL 295

Query: 55  LSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +       +  +         R+   +       +    IE V         ++ V   
Sbjct: 296 RNIDRQTNLVNDLLDLSRIESGRMKLKFESVSLDSLIADSIESVKHAASEKGIKLNVKLP 355

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                +  +R    ++++NL   A    PR G+++I   +   +    +   G      +
Sbjct: 356 EGLSSVKGDREKLTQVVINLLNNAIKFTPRSGEISIKAIELNGQVEVKVSDTGIGIPPED 415

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                                  +       +   +   +  E            L++
Sbjct: 416 LEKVFDKFYQVDSTLTREAGGTGLGLAICKGIIEAHNGHIWAESELGKGSTFVFTLDR 473


>gi|89893593|ref|YP_517080.1| hypothetical protein DSY0847 [Desulfitobacterium hafniense Y51]
 gi|89333041|dbj|BAE82636.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 462

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA ++        L     + I H++ +P+ +I + +E   +     + E + +I     
Sbjct: 231 MADSLK---KQEHLRKQFTADIAHELRTPLTSIRSYIEAFQDGVLPADKENLTIINEEIE 287

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +             +  ++L F      + +    +    +     +    +   +  
Sbjct: 288 RLVGLSSDLKDLNVAEMGALKLNFTQVDITELIDKTVNKLIPLIQEKGIAFEWEKPASVF 347

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    ++  NL   A+      G+++I ++  +++   S+  +G      +    F
Sbjct: 348 IEGDEYHLTRLFYNLIHNAYKFTESNGRISIQMELRQSDVRISVCDSGIGIPKEDLPFIF 407

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +         I    V  +   ++  L  E         + +L 
Sbjct: 408 ERFYRAEKSRSRETGGTGIGLALVQQITQLHRGTLDVESNPGQGSKFTVVLP 459


>gi|126172339|ref|YP_001048488.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS155]
 gi|125995544|gb|ABN59619.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS155]
          Length = 717

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 457 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 516

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K+      +++ 
Sbjct: 517 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 576

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++               QD        ++  G+   
Sbjct: 577 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDMPIGVKIEVEDEGSGI- 635

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+  +I D    +  D   +       +       +          + +  L
Sbjct: 636 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTLFTIGL 689


>gi|328555716|gb|AEB26208.1| sensor histidine kinase [Bacillus amyloliquefaciens TA208]
 gi|328914102|gb|AEB65698.1| Phosphate regulon sensor protein phoR [Bacillus amyloliquefaciens
           LL3]
          Length = 472

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 57/236 (24%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQ 51
           M + I  +  +            S   H++ +P+ +IH  +E+L     E        ++
Sbjct: 236 MLERIETSFQAEKEAKERIRQFVSDASHELRTPLTSIHGFIEILMRGAAEKPEQKEKALR 295

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVS 103
            +   S+ A   ++ +             +         L    Q+            V 
Sbjct: 296 SMYAESVRANKLIEDLLFLAKIDRVPSFEMEKGALGAVILEMEAQLKLLARNRKLEFFVD 355

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              + +    +  +++LNLF  A         V           +  +  NG        
Sbjct: 356 QQIKAVFDKDKMKQVILNLFYNAVQHTDEETGVITVSLQKDGGIMLMIADNGTGIAPEHV 415

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +       +   +   +  +       V    L 
Sbjct: 416 PHLFDRFYRAETSRSRKYGGTGLGLAITKTIIDSHNGTIEVKSEQGKGSVFIIRLP 471


>gi|308175742|ref|YP_003922447.1| sensor histidine kinase [Bacillus amyloliquefaciens DSM 7]
 gi|307608606|emb|CBI44977.1| sensor histidine kinase RBAM_037320 [Bacillus amyloliquefaciens DSM
           7]
          Length = 472

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 57/236 (24%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQ 51
           M + I  +  +            S   H++ +P+ +IH  +E+L     E        ++
Sbjct: 236 MLERIETSFQAEKEAKERIRQFVSDASHELRTPLTSIHGFIEILMRGAAEKPEQKEKALR 295

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVS 103
            +   S+ A   ++ +             +         L    Q+            V 
Sbjct: 296 SMYAESVRANKLIEDLLFLAKIDRVPSFEMEKGALGAVILEMEAQLKLLARNRKLEFFVD 355

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              + +    +  +++LNLF  A         V           +  +  NG        
Sbjct: 356 QQIKAVFDKDKMKQVILNLFYNAVQHTDEETGVITVSLQKDGGIMLMIADNGTGIAPEHV 415

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +       +   +   +  +       V    L 
Sbjct: 416 PHLFDRFYRAETSRSRKYGGTGLGLAITKTIIDSHNGTIEVKSEQGKGSVFIIRLP 471


>gi|227529844|ref|ZP_03959893.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           vaginalis ATCC 49540]
 gi|227350328|gb|EEJ40619.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           vaginalis ATCC 49540]
          Length = 622

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 67/225 (29%), Gaps = 28/225 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-AF 71
             S + H++ +P+ ++ + +E L      +  I  + +++++  +   I  +  +   + 
Sbjct: 381 FVSNVSHELRTPLTSVKSYVEALSDGAWQDKEIAPQFLKVVQDETERMIRMINDLLSLSR 440

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------------TGEKIDLSRE 114
              G+    +   +I ++    +     +                            + +
Sbjct: 441 MDAGTTKLNLEYVNINELFNYILNRFDMIIKKEEDPKKKKYTIERFFTKKDLWVEIDTDK 500

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             +++ N+   A    P GG +T  + ++ N  I S+   G      +            
Sbjct: 501 FTQVIDNIMNNAIKYSPDGGVITARLLETHNHVIMSISDQGLGIPRKDLSHIFDRFFRVD 560

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       + +    ++  + ++         L 
Sbjct: 561 KARSRKQGGTGLGLAISKEVVNMLGGQIWVDSVEGKGSTFYISLP 605


>gi|213612380|ref|ZP_03370206.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 297

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 81/220 (36%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 72  RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 131

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
           +  +             + L DI       V +D  + + +++ +       +  +    
Sbjct: 132 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 191

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 192 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 250

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 251 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 290


>gi|218233945|ref|YP_002365446.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218161902|gb|ACK61894.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 463

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 62/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +                  + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIAIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|21229307|ref|NP_635229.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907888|gb|AAM32901.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 892

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 70/243 (28%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL------DEVGIED 47
            K     L    L A           + + H++ +P+ AI    +++      +      
Sbjct: 325 RKKTEEELLQAKLAAESANRAKSEFLTNMSHELRTPLTAIIGFSDVMLGGISGEFSEQNK 384

Query: 48  EVMQLIRLSSMSAIIRLKF-MRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AV 96
           + +  I  S    +  +   + L+    G ++    +  + +V  D             +
Sbjct: 385 KFLNNIANSGKHLLTLINNILDLSKIEAGKMELEFEMFSVSEVFNDTRAVTSALALKKDI 444

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
             +  V              +I+ NL   A    P  G V +S   +++    S+   G 
Sbjct: 445 SMKYNVDSEILVYADRVRFKQIIYNLVSNAIKFTPDRGSVIVSALKTEDSVRISVSDTGI 504

Query: 157 LARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                      +  + +D ++    +   +    V    + +  R+  E           
Sbjct: 505 GISEENQKLLFQPFRQIDASINRHYEGTGLGLALVKKFVNLHGGRVWAESEPGKGSTFEF 564

Query: 212 LLE 214
            L 
Sbjct: 565 ELP 567


>gi|323698405|ref|ZP_08110317.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323458337|gb|EGB14202.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 884

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 75/241 (31%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L S  + A+  L   I HD  + + +I NS EL    LD   +    ++ +  ++ 
Sbjct: 502 EKQLLQSQKMEAIGTLAGGIAHDFNNILTSIINSTELAVSDLDPESMTTRDLERVLKAAR 561

Query: 59  SAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R +       D    + +  ++++  +     V          +  +
Sbjct: 562 RGGRVVKQILAFSRPSTEGFRPTDVGGVITEAVELLKSSMPRKIEVLSRIKENLSCVYAD 621

Query: 115 R---AKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKINGN 156
                ++++NL   A  +L R G       D                       ++ NG 
Sbjct: 622 PTQIHQVVMNLCTNAFHALRRTGGTIEVRLDQAEVAGEEADILGLTPGEYVRLVVEDNGP 681

Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I D    +    +   +    V  + H +K  L  +  +    V S  L 
Sbjct: 682 GI-PQDIVDKIFDPFFTTKDKTEGTGLGLAVVHGIVHSHKGGLRVDPREGGGTVFSIFLP 740

Query: 215 K 215
           K
Sbjct: 741 K 741


>gi|83815334|ref|YP_445007.1| sensory transduction histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83756728|gb|ABC44841.1| sensory transduction histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 668

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 57/231 (24%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSS 57
           M +       +  L + L   + H++ +PI  I    E++ E   E      +Q+     
Sbjct: 420 MLRAKQEAEQAARLKSTLIHNMSHELRTPITTITGYAEVIMEEAEEPHRSFALQIRESGR 479

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +      + +A   +G+++  +       +             DK +       +  +
Sbjct: 480 RLSDTLQSVLDMAQIESGTLEVTVQEVSVPGVVRDVVDRHAQAIEDKALTAELDVPEDCV 539

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFPEKFTQIV 168
                 +L  +      +  +  +        +         ++  G       +     
Sbjct: 540 VATDRALLYRILNNLVQNAVKFTEKGRCQVWVEPVAFGVRIHVRDTGVGIDPAFRPHLFE 599

Query: 169 DG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   V    +   +       L       +  +         +  L 
Sbjct: 600 PFKQESEGVAREYEGTGLGLALTKRLVDLLGGAIEVDSAKGEGSAFTVELP 650


>gi|81300625|ref|YP_400833.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
 gi|81169506|gb|ABB57846.1| periplasmic sensor hybrid histidine kinase [Synechococcus elongatus
           PCC 7942]
          Length = 977

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +      L  + + H++ +P+ AI    E++ E   +   ++ +        
Sbjct: 467 AREQAEAANQAKSAFL--ANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKIN 524

Query: 62  IRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              K +                    Y  S      +  ++ +I+  I  ++   +    
Sbjct: 525 NAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCP 584

Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                      +  + LLNL   A       G + + V    ++ +F +  +G     PE
Sbjct: 585 ADIGLMTADVTKLRQTLLNLLSNASKFT-HQGTIQLQVAAQGDQVVFKVVDSGIGM-SPE 642

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +I +                 +              ++  E +       +  L +
Sbjct: 643 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 701


>gi|229175384|ref|ZP_04302899.1| hypothetical protein bcere0006_44640 [Bacillus cereus MM3]
 gi|228608216|gb|EEK65523.1| hypothetical protein bcere0006_44640 [Bacillus cereus MM3]
          Length = 484

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHP 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K          N+ I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKINVTVSIDDNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWVESELGKGTSIFFSLEK 478


>gi|30260804|ref|NP_843181.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47525929|ref|YP_017278.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183642|ref|YP_026894.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65318076|ref|ZP_00391035.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165872713|ref|ZP_02217342.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167635201|ref|ZP_02393517.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167640886|ref|ZP_02399144.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170689022|ref|ZP_02880222.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170708472|ref|ZP_02898914.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177652843|ref|ZP_02935216.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190568579|ref|ZP_03021485.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227816480|ref|YP_002816489.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229602121|ref|YP_002865248.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254684273|ref|ZP_05148133.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254722077|ref|ZP_05183866.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254738738|ref|ZP_05196441.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254742050|ref|ZP_05199737.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754963|ref|ZP_05206997.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254762306|ref|ZP_05214150.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30254253|gb|AAP24667.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47501077|gb|AAT29753.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177569|gb|AAT52945.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164711574|gb|EDR17122.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167511106|gb|EDR86494.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167529460|gb|EDR92211.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170126593|gb|EDS95478.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170667007|gb|EDT17770.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172081877|gb|EDT66946.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190560373|gb|EDV14352.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227007430|gb|ACP17173.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229266529|gb|ACQ48166.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 463

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|156742976|ref|YP_001433105.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156234304|gb|ABU59087.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 509

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 64/213 (30%), Gaps = 18/213 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRL-------- 69
           + + H++ +P+ A+  +LE+L      D  +  + +          ++ +          
Sbjct: 265 ADVSHELRTPLTAMQGNLEVLARGAARDPQLLNESLDDMRREVARLIRMVNDLLLLARSD 324

Query: 70  --AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
                    V+    L     ++      V  R+        I       + LLNL + A
Sbjct: 325 AGIQIRRDPVELDTLLLETHRELRPLAGQVQLRIGEEDQAVVIGDRDRIKQALLNLGINA 384

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDSHDI 181
               P GG VT+S+         S+   G      +    F +    +           +
Sbjct: 385 IQHTPPGGVVTLSLTIRDGHAALSVADTGYGIAPQDLPHIFERFYRADQSRCHNGGGAGL 444

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +   +  ++L         V + LL 
Sbjct: 445 GLSIVRSVVEAHGGKVLVSSEPGKGSVFTMLLP 477


>gi|75908636|ref|YP_322932.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702361|gb|ABA22037.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 933

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 65/242 (26%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
           K+I        L     S + H++ +P+ +I  +L+LL              ++ +   +
Sbjct: 418 KDISDRREVERLKDEFVSVVSHELRTPLTSISGALDLLASKVVPAGSEDAQRMLNIAANN 477

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106
           +   +      + +    +G +       +   ++   + V + +             + 
Sbjct: 478 TDRLVRLINDILDIERIESGKIQITPQACNAADLMTQSVEVMEELAEQGGIQLAMSPLSA 537

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---------VQDSKNENIFSLKINGNL 157
                     ++  NL   A    P G  V ++          +      +F +K  G  
Sbjct: 538 HLWADPDRIIQVFTNLISNAIKFSPAGATVWVTAKIPEKSELEKFPNPVILFEVKDQGRG 597

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       +   +  R+  E            
Sbjct: 598 IPADKLESIFERFGQVDASDSRQKGGTGLGLAICRSILQHHGGRIWAESTLGEGSTFFFT 657

Query: 213 LE 214
           L 
Sbjct: 658 LP 659


>gi|330836363|ref|YP_004411004.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta coccoides DSM 17374]
 gi|329748266|gb|AEC01622.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta coccoides DSM 17374]
          Length = 517

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 58/231 (25%), Gaps = 20/231 (8%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
            +  +L  M+ +     S + H+I SP+  I+    LL          +  + +I   +M
Sbjct: 282 EMTLSLEQMENMRQEFISNVSHEIQSPLATINGFARLLYNDELSPEKRNHFLNIIETETM 341

Query: 59  SAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 + +                   +D  +    +    +             T   
Sbjct: 342 RLSRLSENLLKLAALETDSVKFEPKPYRIDKQLRALLLGYEPQWNEKNITMEASLDTVTL 401

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFT 165
                  +++ +NL   +    P GG + + + +     I  +   G           F 
Sbjct: 402 TADEDMMSQVWINLIHNSIKFTPDGGSIQVELHEHGKSVICKISDTGIGIAEDAQKHIFE 461

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +           +       +   +   +            +  L 
Sbjct: 462 RFYKADKSRERTKKGSGLGLAIAKTIIEMHGGTITVYSKLGAGTTFTVSLP 512


>gi|116255579|ref|YP_771412.1| putative two-component sensor histidine kinase potassium transport
           regulator protein [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115260227|emb|CAK03331.1| putative two-component sensor histidine kinase potassium transport
           regulator protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 902

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 52/233 (22%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
                  S  L + L + I HD+ +P+ AI  +   L +           +++  +   S
Sbjct: 659 RARLAAESDRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRSDLLSTVVDES 718

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  +                      I           +     ++ +  +   
Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNHALHYAGDIIGSALRRAAKILDGHKTEMSIPADLPM 778

Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A    P G  + I      +  +  +   G      +     
Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPEGSVIHIEGWADADNVVVQVSDEGPGIPPADLTRVF 838

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLEK 215
                    D       +               +           V +  L K
Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTITAGNRTGRRGAVFTIRLPK 891


>gi|330686045|gb|EGG97668.1| sensor protein SrrB [Staphylococcus epidermidis VCU121]
          Length = 498

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 61/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 282 ANVSHELRTPIALLQGYTESIVDGVVTEPDEIHESLAIVLDESKRLNRLVNELLNVARMD 341

Query: 74  ----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                         D L  +    +     + ++ + +V+             ++L NL 
Sbjct: 342 AEGLSVEKETQPISDLLNKMRIKYRQQATDLELNMQFEVNNQQLWNYDMDRMDQVLTNLI 401

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--S 178
             A      G  ++++  +  + NI  +   G         + F +    +         
Sbjct: 402 DNASRYTQPGDTISVTTDEDNSYNILRITDTGTGIAPEHLQQVFDRFYKVDASRKRGKQG 461

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  E            L K
Sbjct: 462 TGLGLFICKMIIEEHGGIIEVESQVGEGTTFIIKLPK 498


>gi|322417779|ref|YP_004197002.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320124166|gb|ADW11726.1| multi-sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 1084

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 70/236 (29%), Gaps = 22/236 (9%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
            + +     L    L +   S + H++ +P+ +I +  E+L     D+     + + +I  
Sbjct: 814  LEQANTRLLELDRLRSDFLSTVSHELRTPLTSIRSFSEILLRYEVDDPEKRRKFVAIIAS 873

Query: 56   SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103
             +      +  +   +    G ++      +++ V    +   + +              
Sbjct: 874  EAERLTRMINDLLDLSRIEAGRLELHPEPLELDAVFARAVGTAQPLMAEKGLQSRVEIEA 933

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
               + +  +    ++L NL   +    P GG + +  +      + S+   G        
Sbjct: 934  GLPQVLADADRMHQVLTNLLSNSVKFSPEGGTIRLGGRRQGEFALISVTDQGPGIPADRL 993

Query: 162  -EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + F +                +       +  +   R+  E       V S  + 
Sbjct: 994  EQVFERFHQVRTPQKSHALGTGLGLTISREIVEKMGGRIWVESELGAGAVFSFTVP 1049


>gi|237719843|ref|ZP_04550324.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451112|gb|EEO56903.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 926

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 67/228 (29%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           A++    +  +    L  + + H+I +P+ AI    +LL   +E+    E ++++R ++ 
Sbjct: 690 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELAERQEYIKIVRENNE 747

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
             +  +                  G VD  +   DI + +      +  +          
Sbjct: 748 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVFDGHLPVCH 807

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +    E  F ++  G      +     
Sbjct: 808 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 866

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 867 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914


>gi|228913339|ref|ZP_04076972.1| hypothetical protein bthur0012_5820 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846248|gb|EEM91267.1| hypothetical protein bthur0012_5820 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 422

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 197 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 256

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 257 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 316

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 317 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 376

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 377 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 415


>gi|307153723|ref|YP_003889107.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306983951|gb|ADN15832.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 373

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 76/238 (31%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLI 53
           +A+ +         L +   S   H+  +P+  I    +LL           + + ++ I
Sbjct: 135 LAQVLRQQAETQSQLKSQYISLASHEFRNPLTNIKAWAQLLQRYGHTWSSEKQQQSLERI 194

Query: 54  RLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           ++++                 +  +      VD +    ++ Q+ +  +    ++ +++ 
Sbjct: 195 QVAAEQMNQLLEDISTLGRTDLIKSRFNPVPVDFVAFCQNLIQIHQMMVGETYKLTLTYE 254

Query: 106 GEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                 +          +L NL   A    P+GG+V + +   ++E    ++  G     
Sbjct: 255 ENCDRNTIALDETLLGYLLNNLLSNAIKYSPQGGEVALKLFCQESEIYLQVQDQGIGIPP 314

Query: 161 PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +           S +       +    V  +   +  R+  E ++      +  L K
Sbjct: 315 SDLPQVFEPFQRASNVGTIPGTGLGLVIVKRVVELHGGRIEVESLEGTGTTFTVTLPK 372


>gi|301162515|emb|CBW22061.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 870

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 60/234 (25%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +       L +  L +   + + H+I +P+ AI    +LL +            ++ I  
Sbjct: 635 LTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEVKLFIETINK 694

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                   G+   +            +   + +  ++  +
Sbjct: 695 NCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLKLPEN 754

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
                +  +    +++ NL   A     +G       ++        ++  G        
Sbjct: 755 SKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGL 814

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +  +      +       +       +     + H    +  L 
Sbjct: 815 RHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866


>gi|146309198|ref|YP_001189663.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577399|gb|ABP86931.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 783

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 65/235 (27%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+    N S     +   SR+ H++ +P+ +I    +LL+           +R    +  
Sbjct: 394 AREEAENASRAK--SEFLSRMSHELRTPLNSILGFAQLLEMDRGTPAQQAQVRHILRAGR 451

Query: 62  IRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106
             L  +                      L  L     ++    A    +++         
Sbjct: 452 HLLGLINEVLDIARIESGRLALSPEPLPLRPLLQEVSLLLSPQADSADIRLRLPEELPAE 511

Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  +   ++LLNL   A      GG V + VQ   +    S+  NG      +   
Sbjct: 512 LCVQADRQRLVQVLLNLLSNAIKYNHPGGHVEVRVQADSDTVTLSVIDNGPGIAAEDL-E 570

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++           S ++   +       L  +    L            S  L +
Sbjct: 571 RLFIPFERLGAAASEVEGTGLGLALSKSLLEQMDGSLGVHSTPGEGSTFSLTLPR 625


>gi|60680953|ref|YP_211097.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|253563207|ref|ZP_04840664.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265762908|ref|ZP_06091476.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|60492387|emb|CAH07154.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|251946983|gb|EES87265.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263255516|gb|EEZ26862.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 870

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 60/234 (25%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +       L +  L +   + + H+I +P+ AI    +LL +            ++ I  
Sbjct: 635 LTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEVKLFIETINK 694

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                   G+   +            +   + +  ++  +
Sbjct: 695 NCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLKLPEN 754

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
                +  +    +++ NL   A     +G       ++        ++  G        
Sbjct: 755 SKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGL 814

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +  +      +       +       +     + H    +  L 
Sbjct: 815 RHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGTITVTSEEGHGTRFTVRLP 866


>gi|227834014|ref|YP_002835721.1| two-component system sensor kinase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262183499|ref|ZP_06042920.1| two-component system sensor kinase [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227455030|gb|ACP33783.1| two-component system sensor kinase [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 483

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 58/209 (27%), Gaps = 16/209 (7%)

Query: 23  CHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            H++ +P+ ++    EL         E    ++   S   +++    + L       +D 
Sbjct: 270 SHELRTPLTSLRGYTELYRSGATKDPEFVFSKIDAESQRMSLMVEDLLALTRAEGSRLDM 329

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWT--------GEKIDLSRERAKILLNLFMVAHASLP 131
                    +     A       +                +    ++LLNL         
Sbjct: 330 REVDMLELVLSVGSSARAAFAGRTINVNNEASGIPMVNGDADRLHQVLLNLVSNGIRHGG 389

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYV 186
               VT++++D +   +  +  +G      +    F +    +           +    V
Sbjct: 390 EEASVTLTLRDDEEHVLIDVADDGKGISPEDAAHIFERFYRADTSRTRDTGGSGLGLAIV 449

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             L  ++   +  +       V +  L K
Sbjct: 450 KSLVEQHGGSISVDSELGSGSVFTVRLPK 478


>gi|153003884|ref|YP_001378209.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027457|gb|ABS25225.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 441

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA +      S++    + S++ H++ +P+  +   ++L      E    + + +     
Sbjct: 208 MASDALARAQSLE---QIGSKVAHELKNPLTGVKALVQLGLRNPAEATSHERLEVVDREV 264

Query: 61  IIRLKFMRLAFGYTGSVDS---------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               + +     +T  + +          +    +  +         R+           
Sbjct: 265 TRMQEILHNYLSFTRPLQTVTPRRVQLGPLVSDTLVVLSARADEARVRLYAQGDATLEAD 324

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            R   + LLNL   A  + P GG+V + V+ + +E    ++  G     P+   +I    
Sbjct: 325 PRRIKEALLNLVANAIEATPAGGEVVVEVRPAGDEAEIVVRDTGRGM-PPDTLRRIGTPF 383

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  D   +       +  ++   L  E    H   +   L +
Sbjct: 384 FTTREDGTGLGVVLARSVIAQHGGSLRYESEPGHGTRVRVTLPR 427


>gi|156740891|ref|YP_001431020.1| GAF sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156232219|gb|ABU57002.1| GAF sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 842

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
           +       + S  L A+  L + + H++ +P+ A+     +L +    +    L      
Sbjct: 465 LRLAQQRLIQSERLTAVGELVAGVAHELNNPLTAVLGFANILQQTAPTEYQHDLAMIVES 524

Query: 55  --LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110
              +       L F R    +   VD  + +  +  ++   +     V        +   
Sbjct: 525 ATRARRIVQNLLTFARQRQVHREEVDLNLAVRQVLSLLAYHMRTHHIVVEERLKPNLPLT 584

Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTIS-------VQDSKNENIFSLKINGNLARFP 161
              +    +++LNL   A  +L                 +D +   I  +   G      
Sbjct: 585 TADATAIKQVVLNLLNNAQQALASWHGERRILISTDSEWRDGQEWLILRISDTGPGIAPE 644

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I +    +    +   +       +  +    +    +       +  L 
Sbjct: 645 HLPL-IFEPFFTTKPVGEGTGLGLSICYGIVTQYHGHIHVHSVVGSGASFTVELP 698


>gi|261253003|ref|ZP_05945576.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260936394|gb|EEX92383.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 653

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + S  L AL  L + I H+I +P   I  ++EL+     D+     E ++ I
Sbjct: 408 LNQTRDKLVISEKLAALGELTAGIAHEINNPTAVILGNVELIQFELGDDSKRVAEEIEAI 467

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       +    Q++ 
Sbjct: 468 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIEESVTLVKTGAKKRDISFETQLNA 527

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M    ++   G+          +      I  ++  G    
Sbjct: 528 HTCVEVNRHQLLQILVNLQMNGIHAMQGKGRLLISSEDWVEEGKSRGAIIHVQDGGCGI- 586

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +I      +  +   +       +  ++   L  E       V S  L 
Sbjct: 587 KEDNLKRIFSPFYTTKREGTGLGLSVSQSILSQSGGELKVESEWGKGSVFSIYLP 641


>gi|297569080|ref|YP_003690424.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924995|gb|ADH85805.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 576

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 18/225 (8%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSA 60
             L S  L A+  L + I H+  +PI  I N L+ L         + +++ +        
Sbjct: 349 QLLHSEKLRAVGKLAASIAHEFNNPICGIRNVLQGLQRRQTLAAGDHDLVAMAVRECDRV 408

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLS 112
                 ++     T S   ++ +    + I      D        ++           + 
Sbjct: 409 ARLTSDLQSFNRPTSSQLVMLDVHAALKDILLLCQKDLENGKVEVRQELAPDLPPVRAVP 468

Query: 113 RERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +  ++ LNL   A  ++   G   +   +   +E + S   +G      E   +I +  
Sbjct: 469 DQLKQVFLNLLTNAREAIGPTGGRIVIATRREDDEVMISFCDSGCGI-AAENLERIYEPF 527

Query: 172 VEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    +       +   +  RL  E  +         L 
Sbjct: 528 FSTKPAVKGTGLGLAVSYGIVQRHGGRLEVESREGQGACFKLFLP 572


>gi|254512486|ref|ZP_05124553.1| alkaline phosphatase synthesis sensor protein PhoR
           [Rhodobacteraceae bacterium KLH11]
 gi|221536197|gb|EEE39185.1| alkaline phosphatase synthesis sensor protein PhoR
           [Rhodobacteraceae bacterium KLH11]
          Length = 343

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 16/240 (6%), Positives = 60/240 (25%), Gaps = 33/240 (13%)

Query: 9   LSSMDLVALL----CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMS 59
           ++ ++    +     + + H++ +P+ A+   +E L      +    D  +Q++   +  
Sbjct: 104 VTHLEQAGQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDTAARDRFLQIMTDEANR 163

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKID 110
               +  +                              +         R+ +    E ++
Sbjct: 164 MNRLVGDLLSLNRVESEERVRPKEPLKLTGLIRSTLNTLKPLADDASVRLSLDAPDEPVE 223

Query: 111 LSRERAKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +  ++      +   ++                              +   G     
Sbjct: 224 MVGDSDQLRQVFTNLVENAIKYGGSGGVVDVIVTLSERDTAMRGPAVRIKIVDQGPGIDA 283

Query: 161 PEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    +      +    +    V  + + ++ RL  E       V + +L +
Sbjct: 284 KHLPRLTERFYRADSHRSRELGGTGLGLAIVKHILNRHRGRLRVESELGQGAVFTVILPR 343


>gi|229917934|ref|YP_002886580.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469363|gb|ACQ71135.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAI 61
           +++        + + L S + H++ +P+ +I+   EL+    +++   +L  +     A 
Sbjct: 374 RDVTAETEIDRMKSELVSTVSHELRTPLSSIYGFTELMLSRDLKESRRELYLKTIHDEAK 433

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                                     VD    + D     ++     +    + T +   
Sbjct: 434 RLSYLVNDFLDLQKMESGKQAFEWEPVDLYQLVTDSVAFYQETTDRHELFIDADTEQDFI 493

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     ++L NL   A    P GG + +S++    E +  ++ +G            
Sbjct: 494 IDADLEGMRQLLGNLLSNAIKYSPDGGNILVSLERVDEEVVMKVRDHGMGIPSASLPHLF 553

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        I    +       +A  ++ +L  E +          L 
Sbjct: 554 GKFYRVDNSDRRKIGGTGLGLAICKEIAKAHEGQLHVESVYGEGSTFICELP 605


>gi|163814968|ref|ZP_02206355.1| hypothetical protein COPEUT_01118 [Coprococcus eutactus ATCC 27759]
 gi|158449651|gb|EDP26646.1| hypothetical protein COPEUT_01118 [Coprococcus eutactus ATCC 27759]
          Length = 569

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 67/242 (27%), Gaps = 27/242 (11%)

Query: 1   MAKNI----CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
           M + +       +   +    L S I HD+ +PI  I   +E + +   +          
Sbjct: 262 MRQRMSDFAKAKMHYEEENRQLISNISHDLRTPITTIKGYVEGIMDGVADTPEKRDRYLK 321

Query: 50  --------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDK 98
                   M  +                   +  SV              ++   + +  
Sbjct: 322 MIYSKANEMDSLINELSLYTNINNNAIPYEFHRVSVKDYFNDCMEEVHATLMSKNMTLTY 381

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNL 157
           R         I    +  +++ N+   +   + +  G+V IS+ D+  E   ++  NG  
Sbjct: 382 RNYCDDDVMVIVDPDQLKRVINNIVTNSIKYMDKEYGQVDISIYDNDAEVKIAINDNGRG 441

Query: 158 ARF---PEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 P  F ++   +          +       +  E+   +           +   L
Sbjct: 442 IDTDSLPHIFDRMYRADSARQSRGGSGLGLAICKKIVEEHGGNIYATSQIGKGTTIVFTL 501

Query: 214 EK 215
           +K
Sbjct: 502 KK 503


>gi|304408466|ref|ZP_07390110.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304342551|gb|EFM08401.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 623

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 70/229 (30%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +       S  L  L  L + + H+I +P+ ++     LL+           GI  E 
Sbjct: 390 LKQTRDMLGRSEMLSVLGQLAAGVAHEIKNPLTSLKGFARLLEPSLQNKEQRFIGIMKEE 449

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +  I L     ++  K   + F      + L  + ++        +++ + +        
Sbjct: 450 LDRIELIVNEMLVLSKPQVIMFEERDMSELLNYVIELLGTQAIMKSIEIKKEFEPVPLIA 509

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFT 165
              R+  ++ +NL   A  ++P  G   I          +     +   G     P++  
Sbjct: 510 CEDRQLKQVFVNLLKNAIEAMPGDGHGQIRVSLQQAGHSDSIRIEVSDQGQGI-APDRLA 568

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +    +      +       +   +   +           ++  L 
Sbjct: 569 RLTEPFYTTKEKGTGLGLMMTASIVERHGGTIHFASELGVGTTVTVTLP 617


>gi|300932508|ref|ZP_07147764.1| two-component system sensor kinase TcsS1 [Corynebacterium resistens
           DSM 45100]
          Length = 539

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 17/209 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM------SAIIRLKFMRLAFGYTGS 76
            H++ +P+ ++    EL      +D  M + R+S             L  +R+  G    
Sbjct: 321 SHELRTPLTSVRGYAELYQSGATDDAGMVIERISEEAGRMSLLVEDLLALVRMDEGRPLK 380

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASL 130
            D +  L  +    +   A     +VS   +  D+           +++ NL   A    
Sbjct: 381 QDRVDILELVLHAADSARAGFPGRRVSVNNKCGDIPVVIGDANRLHQVVGNLLTNALRHG 440

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST--IDSHDIQFYY 185
                V I++ +S+ E    +  +G      +    F +    +V  +       +    
Sbjct: 441 GEDASVQINLSESQREVSIEIADDGRGIAAEDLPHLFERFYRPDVSRSRASGGSGLGLSI 500

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  L   +   +            + +L 
Sbjct: 501 VKSLVEAHGGTISVASTLGEGTTFTVVLP 529


>gi|295090136|emb|CBK76243.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 348

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 61/219 (27%), Gaps = 16/219 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             L     + I H+  +P+ AI     LL +  + ++         + ++ +L  +    
Sbjct: 124 ESLRNDFAANISHEFRTPLAAIEGYTTLLQDHSLTEKERDEYIHIIIDSVRQLSSLSGNI 183

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------------EKIDLSRERAK 117
                ++    + +  +   D       + +                       +    +
Sbjct: 184 LAMSRLEKQEIVTNKTRYCLDEQLRQAILLLEPLWDEKKLDLDIDMETAWYYGNADMIMQ 243

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-- 175
           + +NL   A    P+ G + + +++  +    S++  G                 +    
Sbjct: 244 VWVNLLHNAIQYTPKNGTIRVYLKNEGSLIRVSIQDTGIGMDEATIAHIFDKFFRKDKNS 303

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    V  +   +   +  E   D     +  L 
Sbjct: 304 SSGNGLGLPMVKRILELSHGSITVESRPDEGSSFTVTLP 342


>gi|237720764|ref|ZP_04551245.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449599|gb|EEO55390.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 810

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 17/226 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     E  + I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                        +VD      +I + +   ++    +       +  
Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKVSKGVELIFEEPFPECY 697

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     +++ N    A     +G       Q S  +  F ++  G      ++ +  
Sbjct: 698 IYTDKNRFTQVISNFINNALKFTQQGCITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVF 757

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  + +    +       +  +    +  +  +         
Sbjct: 758 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGVGSCFWFT 803


>gi|283798527|ref|ZP_06347680.1| sensor histidine kinase [Clostridium sp. M62/1]
 gi|291073788|gb|EFE11152.1| sensor histidine kinase [Clostridium sp. M62/1]
          Length = 348

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 61/219 (27%), Gaps = 16/219 (7%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             L     + I H+  +P+ AI     LL +  + ++         + ++ +L  +    
Sbjct: 124 ESLRNDFAANISHEFRTPLAAIEGYTTLLQDHSLTEKERDEYIHIIIDSVRQLSSLSGNI 183

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------------EKIDLSRERAK 117
                ++    + +  +   D       + +                       +    +
Sbjct: 184 LAMSRLEKQEIVTNKTRYCLDEQLRQAILLLEPLWDEKKLDLDIDMETAWYYGNADMIMQ 243

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-- 175
           + +NL   A    P+ G + + +++  +    S++  G                 +    
Sbjct: 244 VWVNLLHNAIQYTPKNGTIRVYLKNEGSLIRVSIQDTGIGMDEATIAHIFDKFFRKDKNS 303

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    V  +   +   +  E   D     +  L 
Sbjct: 304 SSGNGLGLPMVKRILELSHGSITVESRPDEGSSFTVTLP 342


>gi|205375590|ref|ZP_03228377.1| hypothetical protein Bcoam_21676 [Bacillus coahuilensis m4-4]
          Length = 320

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60
           N+  +     L   + + I H+I +P+  +   L+LL    +  I +    L+      A
Sbjct: 80  NVIKSAEKQALAGRIAAGIAHEIRNPLTTVRGFLQLLQPRMDEEISELFSSLLIPEIDRA 139

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK--- 117
              +K        + S    I + +  +         + +  ++  E +       K   
Sbjct: 140 NTIIKDFLQIAKPSDSSLETIEISEFIKNYLGNFLHSEALLHNFDLEFVIDPLAEGKLFV 199

Query: 118 --------ILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   + LNLF  +  ++ +G          + N        NG      E  T + 
Sbjct: 200 GDKEKLFSVFLNLFQNSKQAMTKGKLSIQILASYANNCLQIFFMDNGPGI-PKEIVTHVF 258

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +  +   +       +   +   L    I+D        L 
Sbjct: 259 DPFFTTKDEGTGLGLSISRKIIENHGGSLTISSIED-GTQFMIELP 303


>gi|119900236|ref|YP_935449.1| putative two component sensor protein [Azoarcus sp. BH72]
 gi|119672649|emb|CAL96563.1| putative two component sensor protein [Azoarcus sp. BH72]
          Length = 852

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 52/235 (22%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         +  + +   + + H++ +P+  I    EL+ +    DEV         S 
Sbjct: 606 LEDARRQAEDNSRMKSDFVASMSHELRTPLNGILGFAELIRDDAPNDEVRDHADTIYQSG 665

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----W 104
                                   + + D    L  +  +             +      
Sbjct: 666 EHLLSLVNDVLDIAKIEAGHMSLESVAFDLPALLQQVANLHGTMAQQKGLAFATEFAPGL 725

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                       +++ NL   A    P G    ++  ++    I  ++  G         
Sbjct: 726 PATLAGDPTRLRQVINNLLNNAIKFTPAGEVKLLARTEADR-LIVGVRDTGPGIAAEMQP 784

Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     +        +    V  +       +  E            + 
Sbjct: 785 VIFDRFRQASTFITREHGGTGLGLALVREVVALMGGAVRLESAPGEGAYFEFWIP 839


>gi|312864534|ref|ZP_07724765.1| PAS domain S-box protein [Streptococcus downei F0415]
 gi|311099661|gb|EFQ57874.1| PAS domain S-box protein [Streptococcus downei F0415]
          Length = 453

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 69/223 (30%), Gaps = 25/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE L+E  +            +             L+  R
Sbjct: 211 LFVSTVSHELRTPLTSVKSYLEALNEGALNEEVAPSFIQVSLDETNRMMRMISDLLQLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------TGEKIDLSRERA 116
           +    +     +        VI +     K  Q S                    + +  
Sbjct: 271 IDNDTSHIEVEMTNFTAFITVILNRFDQIKSQQDSDKDYEIVRNYPLNPIWVEIDTDKMT 330

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           ++L N+   A    P GG++T+S+  ++ + I S+   G      +    F +    +  
Sbjct: 331 QVLDNILNNAIKYSPDGGQITVSMTTTETQLIISISDQGLGIPKKDLPLIFDRFYRVDKA 390

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  +++  +  +         + +L 
Sbjct: 391 RSRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGKGSTFTIVLP 433


>gi|167772672|ref|ZP_02444725.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
 gi|167665150|gb|EDS09280.1| hypothetical protein ANACOL_04053 [Anaerotruncus colihominis DSM
           17241]
          Length = 566

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 60/216 (27%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
             + + H++ +P+ +I    E+++        +V +        A   +         + 
Sbjct: 344 FAANVSHELKTPLTSISGFAEMMENGMADNSQDVRRFAGRIYTQAQRLIALTDDIIRLSR 403

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------------IDLSRERAKILLNLF 123
              + +      ++        + ++ +   ++                +   +++ NL 
Sbjct: 404 IERADLTENVPVELRALCDRAVETLRFTAEQKQVEIAVTGGPAPVRGDRQMLDELITNLM 463

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178
             A      GG+V +S+          +   G           F +    +   +     
Sbjct: 464 DNAVKYNRPGGRVDVSLSVQDGLVCLRVADTGIGIPKEHQERIFERFYRVDQSRSKQTGG 523

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   +   +  E +      ++  L 
Sbjct: 524 TGLGLSIVKHVVERHGGSITLESVPGEGTAVTVRLP 559


>gi|229042512|ref|ZP_04190257.1| hypothetical protein bcere0027_5780 [Bacillus cereus AH676]
 gi|229108260|ref|ZP_04237881.1| hypothetical protein bcere0018_5490 [Bacillus cereus Rock1-15]
 gi|229148988|ref|ZP_04277233.1| hypothetical protein bcere0011_5570 [Bacillus cereus m1550]
 gi|228634528|gb|EEK91112.1| hypothetical protein bcere0011_5570 [Bacillus cereus m1550]
 gi|228675173|gb|EEL30396.1| hypothetical protein bcere0018_5490 [Bacillus cereus Rock1-15]
 gi|228726865|gb|EEL78077.1| hypothetical protein bcere0027_5780 [Bacillus cereus AH676]
          Length = 463

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 62/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +                  + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIAIEDEGEGIPLEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|303246500|ref|ZP_07332779.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302492210|gb|EFL52085.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 505

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 64/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           + ++    + S  L     L + + H I +P+ ++   L  L+             + + 
Sbjct: 264 LEQSRGHLMQSEKLAMAGRLAAGVAHTIRNPLTSVKMRLFSLERGLKLDPTQKEDFEVIA 323

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109
           + I          L+F R        V     +     +      + +  V V       
Sbjct: 324 EEIGHIDTIVRNFLEFARPPKLTAQPVSLSDVVDTTLTLLKHRLESYNVTVTVDRVRPLP 383

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFP 161
            ++ +  ++   L      A  ++  GG++ I                 +  +G      
Sbjct: 384 PINADPDQLKEALVNLVLNACEAMIEGGEILIREEVGVLDPHGRILAVRVSDSGPGV-PQ 442

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I      +  +   +    V  +  E+   +  +  +      + +  
Sbjct: 443 ALVENIFQPFFTTKGEGSGLGLPIVKRIVEEHGGWITVQSPEGKGTTFTMVFP 495


>gi|228908374|ref|ZP_04072218.1| hypothetical protein bthur0013_25350 [Bacillus thuringiensis IBL
           200]
 gi|228851282|gb|EEM96092.1| hypothetical protein bthur0013_25350 [Bacillus thuringiensis IBL
           200]
          Length = 360

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 74/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A   +  +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKSDQISVKQELNRVINMIFPLCNMNTIHITQDFSEAVIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|296501408|ref|YP_003663108.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322460|gb|ADH05388.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 463

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 62/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +                  + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|237711472|ref|ZP_04541953.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454167|gb|EEO59888.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 807

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 54/228 (23%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     +  Q + +   +  
Sbjct: 571 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLTETEDMKDRKQYMAIVQENTE 628

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                      T        +    ++           +      
Sbjct: 629 LLLQLISDILDLSKMESGAFEFVKSDTDVNLLCGEIIRSLRMKVPAGVELVFEKCLPECH 688

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ N    A      G       + +     F ++  G      +  T  
Sbjct: 689 VWADKNRLNQVISNFINNALKFTFSGSITLGYYRQTDGYLRFYVRDIGMGIPRNKIKTVF 748

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       L  +    +  E  +           
Sbjct: 749 DRFVKLNSFVHGTGLGLSICKSLVEQMGGTIGVESEEGEGSCFWFTYP 796


>gi|228477483|ref|ZP_04062119.1| sensor protein YycG [Streptococcus salivarius SK126]
 gi|228250918|gb|EEK10106.1| sensor protein YycG [Streptococcus salivarius SK126]
          Length = 446

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  +++E+        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALDEEIAPNFIKVSLDETNRMMRMISDLLALSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115
           +    T     +         I +                 +   +    I +  +    
Sbjct: 270 IDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNTGKTYEIIRDYPVNSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+S++ + ++ I S+   G      +    F +    + 
Sbjct: 330 TQVVDNILNNAIKYSPDGGKITVSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 390 ARSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|225868179|ref|YP_002744127.1| sensor histidine kinase [Streptococcus equi subsp. zooepidemicus]
 gi|225701455|emb|CAW98588.1| sensor histidine kinase [Streptococcus equi subsp. zooepidemicus]
          Length = 450

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +    T     +                             +   +    I L  +    
Sbjct: 271 IDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+ ++++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKIIVNMKTTDTQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  +++  +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHRGFIWAKSDYGKGSTFTIVLP 434


>gi|163938325|ref|YP_001643209.1| multi-sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163860522|gb|ABY41581.1| multi-sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 672

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEERTYEKHNKYFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E     
Sbjct: 506 ANSIITEFLSIGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDIPELFLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G      + ++ +N  + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKECQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|299148396|ref|ZP_07041458.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513157|gb|EFI37044.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 936

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 63/228 (27%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    +  +    L  + + H+I +P+ AI    +LL E     E  + I++   +  
Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELSERQEYIKIVRENND 757

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
           +                       G VD  +   DI + +      +  + +        
Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMGMKAKEEVELVLDNHLPVCH 817

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +    E  F ++  G      +     
Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 876

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924


>gi|253569873|ref|ZP_04847282.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251840254|gb|EES68336.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 631

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 61/231 (26%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +     +  L +   + + H+I +P+ AI     +L ++    E+ +   +   + 
Sbjct: 398 LSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIEDRKEMREYADIIETNT 457

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWT 105
            +                         +D    + +IEQ +   +  +       +    
Sbjct: 458 DLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTLTFTERLPE 517

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +++ N  + A      G           +   F +   G      E+  
Sbjct: 518 CTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCGM-SEEQCR 576

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +        +    +      ++       +  E  +         L 
Sbjct: 577 HVFERFVKYNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627


>gi|258514100|ref|YP_003190322.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257777805|gb|ACV61699.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 522

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 S  L+AL  L + + H++ +P G I    EL+         ++    S    + 
Sbjct: 281 ENQLRQSEHLIALGRLATGVAHELRNPAGIIKTLAELMHNEYSLVTGIEEFTRSIEEQVD 340

Query: 63  RLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KID 110
           R                      S+  L          +   + + V    +        
Sbjct: 341 RQNTVIQELLDFGRPSKCAFKKCSVNDLLTGVLSFSSAMLRKQNITVHLAFQESIPLIWV 400

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            + +  ++ +NL + A  ++P GG + I+            K +G     PE  T I D 
Sbjct: 401 DTEKLKQVFVNLIVNAAEAMPDGGMMEITTTCKDKFLSIQFKDSGEGI-SPELKTLIFDP 459

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +         + +   +  + I     + + +L 
Sbjct: 460 FYTTKATGTGLGLPICYQNLNMHGGTIKVDSIRGQGAIFTIILP 503


>gi|269926146|ref|YP_003322769.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269789806|gb|ACZ41947.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 617

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 76/239 (31%), Gaps = 28/239 (11%)

Query: 1   MAK-NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53
           M        L      +   S + H++ +P+ ++     ++           + E ++ I
Sbjct: 379 MRDVTEQRELDRAK--SNFISMVSHELRTPLNSVLGFANVILSGATGPLSDRQREFLEYI 436

Query: 54  RLSSMSAIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           + SS   +  +  +               S      +          +A ++ +++++  
Sbjct: 437 QASSRHLVQLVSDILDLSRMDAGTFTLHKSKVLPEIIAKQVVSQLSGLAAEQNIELAFLS 496

Query: 107 EKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +K         R   ++L+NL   A    P GGKV + V++  +  +FS+   G      
Sbjct: 497 DKKIPKIEADGRRVEQVLINLVGNAIKFTPPGGKVIVRVRNQGDHVLFSVSDTGPGI-SE 555

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +   +      +      +       L  ++  ++  +            L 
Sbjct: 556 EDMDRIFERFYQPIMNPQAATKGTGLGLAIAKSLVEQHGGKIWVDSTPGQGATFYFTLP 614


>gi|29349762|ref|NP_813265.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341672|gb|AAO79459.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 631

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 61/231 (26%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +     +  L +   + + H+I +P+ AI     +L ++    E+ +   +   + 
Sbjct: 398 LSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIEDRKEMREYADIIETNT 457

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWT 105
            +                         +D    + +IEQ +   +  +       +    
Sbjct: 458 DLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTLTFTERLPE 517

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +++ N  + A      G           +   F +   G      E+  
Sbjct: 518 CTLYTDKNRLIQLISNFVINAIKFTQIGSIRMGYRLKDADTICFYVSDTGCGM-SEEQCR 576

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +        +    +      ++       +  E  +         L 
Sbjct: 577 HVFERFVKYNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627


>gi|323357338|ref|YP_004223734.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
 gi|323273709|dbj|BAJ73854.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
          Length = 546

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 70/230 (30%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII 62
           +I   + +      L + + H++ +P+ AI    +L LD+  +  +V + + + + +   
Sbjct: 309 DITALIEAERARERLAATVSHELRNPLTAIIGHADLALDDPDLSPKVREQLEVIAGAGER 368

Query: 63  RL----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                       + +        + D++  +    +      A  +   +    +  ++ 
Sbjct: 369 MQKLISEILANSRGVFREKDTPKTADAMRIITSSLESFRPAAAARRVTILDDLPDAAEVV 428

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +  ++          A    P GG V +S +   ++ +      G      +       
Sbjct: 429 GDAFRLRQAFDNILSNAIKYTPGGGSVHLSAEVGDDDVVLRFADTGIGIPTEDLPRIFDP 488

Query: 170 GNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +     +    V  +  EN   +  E        ++ +L 
Sbjct: 489 YFRSRAARDSSTPGTGLGMGIVRGIIEENGGSVTLESDLGSGTTVTVVLP 538


>gi|254508931|ref|ZP_05121039.1| sensor histidine kinase [Vibrio parahaemolyticus 16]
 gi|219548170|gb|EED25187.1| sensor histidine kinase [Vibrio parahaemolyticus 16]
          Length = 675

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++EL+     D+     E +  I
Sbjct: 430 LNQTRDKLVVNEKLAALGELTAGIAHEINNPSAVILGNVELIQFELGDDAERVKEEIDAI 489

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+   +++ 
Sbjct: 490 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPVVDESITLVKTGTKKRDVEFVTKLNA 549

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M    ++                D     I  +   G    
Sbjct: 550 KSSVEVNRHQLLQILVNLQMNGIHAMDGKGKLTITTEDWLEGDRCVGAIIHVTDQGCGI- 608

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +I      +  +   +       +  +    L  E         S  L 
Sbjct: 609 KPENLKRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKVESQWGKGTTFSIYLP 663


>gi|169829555|ref|YP_001699713.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
 gi|168994043|gb|ACA41583.1| Alkaline phosphatase synthesis sensor protein [Lysinibacillus
           sphaericus C3-41]
          Length = 498

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L      +  +    +++I   S    + ++ +     
Sbjct: 279 FVANVSHELRTPITSIKGFSETLLDGAYKDEKMLISFLEIIYKESNRLQMLIQDLLELSK 338

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                  +     G  D LI   ++     D   +  +V +    + +  +    +I+ N
Sbjct: 339 IEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDGDVQVMGDANRIIQIVTN 398

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTI 176
           L   A    P    V+I +++++   I  ++  G      E    F +            
Sbjct: 399 LITNAITYSPENTTVSIRLKENETYGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNS 458

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  L   +  R+  E        +  ++ K
Sbjct: 459 GGTGLGLAIVKHLVEAHHGRIQVESEVGVGTTMIVMIPK 497


>gi|328954055|ref|YP_004371389.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454379|gb|AEB10208.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 496

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 62/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + ++    + S  L     L + + H I +P+ ++   L  +     +    ++ + + S
Sbjct: 253 LKQSQVHLVQSEKLAMVGKLAAGVAHSIRNPLTSVKMRLYSMRRHLNLPVGQLEDLDVIS 312

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKI 109
                    +R    Y       I       VI+           +    V ++      
Sbjct: 313 QEIGHIDTIVRNFLEYARPPKLTIQQCSPSAVIDMALTLLRPRLESFKVLVHLNRQQPLP 372

Query: 110 DLSRERAKILLNLFM---VAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++  +  ++          A  ++ +       +    +          ++  G      
Sbjct: 373 EIWADPDQLKEVFVNLIVNACEAMEKGGLITITETEDFIAGIGRVVQIVIQDTGPGIPEG 432

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I      S  +   +     + +  E+   +  +       + S  L 
Sbjct: 433 -MQENIFQPFFTSREEGTGLGLSIALRIIQEHGGWIEVKSPPGQGAIFSLTLP 484


>gi|293372990|ref|ZP_06619359.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292632058|gb|EFF50667.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 820

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 553

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLADNQIV-FHVTDTGTGI-EPEKVGRVF 611

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659


>gi|115376527|ref|ZP_01463760.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1]
 gi|310822047|ref|YP_003954405.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115366460|gb|EAU65462.1| histidine kinase HsfB [Stigmatella aurantiaca DW4/3-1]
 gi|309395119|gb|ADO72578.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 612

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 74/234 (31%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           +       + +  L A+  L + + H++ +P+  I   ++L+     +   + ++++ I 
Sbjct: 379 LRTAQAQLVETQKLAAVGQLGAGVAHELNNPLAGILGYVQLMLMSRPDSDPDLDMLRKIE 438

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWT----- 105
            S+       + +          D        +      + +     + + +        
Sbjct: 439 GSAKRCKEITQNLLRFSQQRERTDLRAVNLNVVVRDALTLTENQVKAEGISLVLELASSG 498

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +  S + ++ +L L   A  ++ +     +T+   +   +  F ++  G     PE 
Sbjct: 499 VRVMADSGQTSQAILALVSNARTAMQKTSAKTLTVRTGERDGKGYFEVEDTGKGI-APEH 557

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++I +    +     +  +       +  E    +            +  L K
Sbjct: 558 RSRIFEPFFTTKDVWSNVGLGLSVTYRVVTEAGGSIDVRSEPGKGSCFTVWLTK 611


>gi|56752287|ref|YP_172988.1| two-component system sensory histidine kinase [Synechococcus
           elongatus PCC 6301]
          Length = 937

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +      L  + + H++ +P+ AI    E++ E   +   ++ +        
Sbjct: 427 AREQAEAANQAKSAFL--ANMSHELRTPLNAIIGYSEMMMEEAEDGIEVEELLPDFRKIN 484

Query: 62  IRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              K +                    Y  S      +  ++ +I+  I  ++   +    
Sbjct: 485 NAGKHLLELINSILDLSKIEAGRMELYLESFSLPELINGVKSIIKPLIEKNQNQLLVDCP 544

Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                      +  + LLNL   A       G + + V    ++ +F +  +G     PE
Sbjct: 545 ADIGLMTADVTKLRQTLLNLLSNASKFT-HQGTIQLQVAAQGDQVVFKVVDSGIGM-SPE 602

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +I +                 +              ++  E +       +  L +
Sbjct: 603 QIDRIFEAFAQADDSTTRKFGGTGLGLSISRHFIEMMGGKITVESVLGEGSTFTITLPR 661


>gi|52082612|ref|YP_081403.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52788010|ref|YP_093839.1| YycG [Bacillus licheniformis ATCC 14580]
 gi|319648477|ref|ZP_08002693.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52005823|gb|AAU25765.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52350512|gb|AAU43146.1| YycG [Bacillus licheniformis ATCC 14580]
 gi|317389556|gb|EFV70367.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 614

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 67/220 (30%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+  + + LE L      +  I    + + +  +   I  +  +     
Sbjct: 383 FVANVSHELRTPLTTMRSYLEALAEGAWQDPNIAPRFLNVTQNETERMIRLVNDLLQLSK 442

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 +    +   +     + +  ++ ++                     +  ++L N
Sbjct: 443 FDSKDYQFNKEWIHFIRFFSLIIERFEMTKEQHVEFISNLPDRELYVEIDPDKITQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE---KFTQIVDGN--VES 174
           +   A    P GG +T SV  ++ E     S+K  G      +    F +    +     
Sbjct: 503 IISNALKYSPEGGHITFSVDVNEEEELLYVSVKDEGVGIPRKDVEKIFERFYRVDKARTR 562

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +   +   +  + I+     ++  L 
Sbjct: 563 RLGGTGLGLAIAKEMVQAHSGDIWADSIEGKGTTITFTLP 602


>gi|53715746|ref|YP_101738.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60683680|ref|YP_213824.1| two-component sensor histidine kinase [Bacteroides fragilis NCTC
           9343]
 gi|253566441|ref|ZP_04843894.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|265767312|ref|ZP_06094978.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|52218611|dbj|BAD51204.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|60495114|emb|CAH09933.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis NCTC 9343]
 gi|251944613|gb|EES85088.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|263252617|gb|EEZ24129.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301165192|emb|CBW24762.1| putative two-component sensor histidine kinase with PAS domain
           [Bacteroides fragilis 638R]
          Length = 522

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 19/228 (8%)

Query: 5   ICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           I   + + +   + +   + + H+I +P+ AI    +L+ E   E E  Q   +   ++ 
Sbjct: 293 IAARIKAEEADRMKSSFLANMSHEIRTPLNAIVGFSKLIIEADNECEKRQYADIVEHNST 352

Query: 62  IRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L                    +      D  + L ++              +V     
Sbjct: 353 VLLNLFNDILDLSALEAGSLELSYHPVRLKDICLQLYELHVKSVKPEVRLVLDEVDSQLC 412

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                   +++L+NL   A      G  +    Q   +   F +   G         T  
Sbjct: 413 IQGDWERISQVLVNLITNAIKFTSVGE-IHFGFQKKADMVQFYMSDTGKGIPAERVATIF 471

Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +      +L  +   R+          V    L 
Sbjct: 472 QRFGKIDDFVQGTGLGLTICRMLVEKMGGRIWVRSKQGEGTVFYFTLP 519


>gi|152982390|ref|YP_001355364.1| signal transduction histidine kinase [Janthinobacterium sp.
           Marseille]
 gi|151282467|gb|ABR90877.1| signal transduction histidine kinase [Janthinobacterium sp.
           Marseille]
          Length = 671

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     + +  L A+  + + + H+I +P+  +  +L++L +            +QL+
Sbjct: 436 LVQAQQQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAAKPVQGELQLM 495

Query: 54  RLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                     +  +                   + +     + + + +   +    +   
Sbjct: 496 DQQIYRINTIVTKLLQFASPGEFAGYVETVVIDEIVADSLVLVRHLLNQSRIAVVHKKEA 555

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLAR 159
           T        E  ++L+NLF  A  ++                D K     S+   G+  R
Sbjct: 556 TLPVSINRGELQQVLINLFTNAIHAMKDGGSLTISTSDWQEADGKRGVAISVADTGSGIR 615

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +                  +       L       +     +      +  L
Sbjct: 616 KEDIAHIFDAFFTTKRQGGTGLGLSISYTLVARYGGTITVRSEEGAGTEFTVRL 669


>gi|115375212|ref|ZP_01462478.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|310818911|ref|YP_003951269.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115367774|gb|EAU66743.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|309391983|gb|ADO69442.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 836

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +A      +      AL  L + + H++ +P+G I N++  L       G    ++ ++ 
Sbjct: 597 LAATRAEMVKRERFAALGELSAIVAHEVRNPLGVIFNAVASLRRLMPSKGDAAMLLDILA 656

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGE 107
             S      +  +         +     LG + Q       +          VQ+     
Sbjct: 657 EESDRLNRIVGDLLDYTRPRDPILHPEDLGRVIQDALEAARLQGGPGGQGVSVQIHVEPS 716

Query: 108 KIDLSRERA---KILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
              +  +R    + L+N+ + A  ++P                ++     +   G     
Sbjct: 717 IPPVPMDRRLIRQALVNIIVNAIHAMPHGGVVRVNARREPHAGRDFLRIDVTDQGMGI-P 775

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ +    +      +    V  +  E++  +  E         +  L 
Sbjct: 776 AELLHRVFEPFFTTKAQGTGLGLAVVKRILEEHRGEIAVEGAQGQGTTFTLRLP 829


>gi|73748977|ref|YP_308216.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73660693|emb|CAI83300.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 394

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K++     S  L ++  L + + H+I SP+ +I    E L      +E  + I     
Sbjct: 130 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 186

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107
            A+           F R              +    ++ E  + +   V           
Sbjct: 187 EALRAAKVVNNLRTFARSYEQEKKLCGLNDVIRKSIELREYELVIQNIVVELELAENLPA 246

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164
            +    +  ++L+N+ + A  ++ +           +D  N     ++ NG     PE  
Sbjct: 247 TLMDFYKIQQVLINMILNAEQAMYQAHGRGRLLIKTEDMGNFIRMIIEDNGPGI-SPEIA 305

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +  D     +       +  E+  ++  E            L 
Sbjct: 306 ERVFDPFFTTKEDSRGTGLGLSVCYGIIMEHDGKVQLESKLGQGTRFIIDLP 357


>gi|300785438|ref|YP_003765729.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|299794952|gb|ADJ45327.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 590

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 55/210 (26%), Gaps = 15/210 (7%)

Query: 18  LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           L S + H++ +P+G I   L        EL  +  +   ++Q   +              
Sbjct: 378 LISDVSHELRTPLGTIRGWLVATQDGVAEL--DDELVSSLLQETSVLQHLVDDLRDLALA 435

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
             G        +   D+ + +           V              +I+ NL   A   
Sbjct: 436 DAGMLRLDRVEVNATDLLRHVAAAHGDRVDTDVPDDLLVEADPVRLHQIVGNLLANAVRH 495

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFY 184
            P  G++ +  +    + + ++   G      +    F +    +           +   
Sbjct: 496 TPPDGRIRLHGRREGPDVLITVTDTGTGIAPEDLPHVFDRFWRADKSRTRRTGGSGLGLA 555

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V  LA      +            +  + 
Sbjct: 556 IVRKLAEAQDGAVTVTSAPGEGSTFTLRMP 585


>gi|205374819|ref|ZP_03227612.1| sporulation sensor histidine kinase E [Bacillus coahuilensis m4-4]
          Length = 503

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 64/226 (28%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQL 52
            +   + L    L  V  L + + H+I +P+  I   ++L  +     E        +  
Sbjct: 270 KQAEEYLLQKEKLSVVGELAAGVAHEIRNPLTTIKGFIQLYKDEQRYSEFDSLILEELGR 329

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           I + +   +   K              +    +        + +   +  +    K  + 
Sbjct: 330 IEMITSEMLSLGKPQAHHLKNLDIEIVVKETVEFLTPQARLLNIGFVLTKNVDTGKELIY 389

Query: 113 RERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            ER ++      +   ++         V   +    N+ + ++  +G      E  +++ 
Sbjct: 390 GERNQLKQVFLNLFKNAMESMEATGGTVYCHISSEHNQCVMTIIDSGCGI-PKEVLSRLG 448

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +       +  ++K  L           +  +L 
Sbjct: 449 EPFYSLKEKGTGLGVMMCHRIIQQHKGTLSYTSEVGEGTKVEVILP 494


>gi|116669431|ref|YP_830364.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
 gi|116609540|gb|ABK02264.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
          Length = 555

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 58/221 (26%), Gaps = 20/221 (9%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSMSAIIR------ 63
           L A     + + H+  +P+ +I   +ELL +          + + +   +A         
Sbjct: 334 LAAKDDFVANVSHEFRTPLTSILGYVELLLDDHDGLRAPHREALMIIRRNAERLLGLVSD 393

Query: 64  -----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                   + ++       + +               V  R       E    S   +++
Sbjct: 394 LLASRSGQLIVSPQAVNVAELVRASISAALPRAAAAKVRLRADAPERLEAHVDSGRMSQV 453

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
           L NL   A    P GG V +S+    +  +  +   G      ++               
Sbjct: 454 LDNLVSNAIKYSPNGGDVVVSLDSDGSHLVCRVSDTGMGMSDKDQAEVFTKFFRTGNVRN 513

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + I    +       +   +   +            +  + 
Sbjct: 514 TAIPGVGLGLSISKAIVEAHGGSIQLRSALGEGTTFTVRVP 554


>gi|320352828|ref|YP_004194167.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
 gi|320121330|gb|ADW16876.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
          Length = 525

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNL-------SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEV 49
           MA+     L        +  L +L  + + + H+I +P+G + ++ E+L      +    
Sbjct: 286 MAERAEERLRLEEQLNEAQRLASLGKMVAAVSHEIKNPLGIVRSTAEILGNRISKVAPGN 345

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQ 101
            +L  +           +R    +    +               +  +  +F     R++
Sbjct: 346 ERLANIIVEETSRLDAIVREFLDFARPREVDKVPGSLNGVVERLLRFMEPEFQQKAVRLE 405

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGN 156
           V       ++  +  +I   L  +   ++    +         ++         +  +G 
Sbjct: 406 VRLDPNLPEIPFDSEQIYQVLLNIVFNAIQAMPQGGDLLLNTMLEPGGGAVAVEVADSGI 465

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PEK  QI             +       +  +++  +  +       +    L 
Sbjct: 466 GI-PPEKLEQIFTPFYTDKNRGTGLGLCIAKSIVEKHQGVIGVKSTPGEGSIFRVTLP 522


>gi|196033201|ref|ZP_03100614.1| sensor histidine kinase [Bacillus cereus W]
 gi|195994630|gb|EDX58585.1| sensor histidine kinase [Bacillus cereus W]
          Length = 484

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M+    +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMEKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVWSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|217975398|ref|YP_002360149.1| histidine kinase [Shewanella baltica OS223]
 gi|217500533|gb|ACK48726.1| histidine kinase [Shewanella baltica OS223]
          Length = 717

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 457 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 516

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K+      +++ 
Sbjct: 517 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 576

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++               QD        ++  G+   
Sbjct: 577 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDMPIGVKIEVEDEGSGI- 635

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+  +I D    +  D   +       +       +          + +  L
Sbjct: 636 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTLFTIGL 689


>gi|153002811|ref|YP_001368492.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS185]
 gi|151367429|gb|ABS10429.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS185]
          Length = 717

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 457 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 516

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K+      +++ 
Sbjct: 517 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 576

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++               QD        ++  G+   
Sbjct: 577 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDMPIGVKIEVEDEGSGIA 636

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +   +I D    +  D   +       +       +          + +  L
Sbjct: 637 PDQLG-RIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTLFTIGL 689


>gi|302035921|ref|YP_003796243.1| hypothetical protein NIDE0542 [Candidatus Nitrospira defluvii]
 gi|300603985|emb|CBK40317.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 910

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + +  L +L  + S + H+I +P  AI +  EL+ E    D V Q        A  
Sbjct: 683 QDELIQAEKLSSLGTMVSGMAHEINNPAQAILSMAELIQEEDDPDTVKQFAADIVGYARH 742

Query: 63  RLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +R   GY               + L+    + +    F  V+   Q          
Sbjct: 743 VSTVVRDFAGYARAAGRDGETEIDVAERLLEAVKMVRRGPHFGQVEIATQFDAPVFLRAR 802

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             E  ++ +NL   A  ++   G +T++          ++   G          +I D  
Sbjct: 803 KGEIDQVFVNLISNATQAMEGIGCLTLTTGQDGRWIQVTIADTGPGIPAS-IRPRIFDPF 861

Query: 172 VESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +        +    V  +  +    +  E  +           
Sbjct: 862 FTTKTAGKGTGLGLSIVHKIVIKYAGTITVESTEGGGTTFRLRFP 906


>gi|297616558|ref|YP_003701717.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144395|gb|ADI01152.1| multi-sensor signal transduction histidine kinase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 592

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFMRL 69
             + + H++ +P+ AI    E L     ++  +Q          +  +      L+  +L
Sbjct: 368 FVANVSHELRTPLAAISGFAETLMMENSDNPAVQQFARIIYDEAQRMTRMVNSLLQLSKL 427

Query: 70  AFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLN 121
                        LG                   +V+V                 ++L+N
Sbjct: 428 ESVGAELDQEEFDLGQCLDTVLQGFEPRLSEKRLKVEVELPENGLVVRADRDRIVQVLMN 487

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177
           L   A    P  G VT+       E +  +   G      E    F +    +   T   
Sbjct: 488 LLDNATRFSPPDGTVTVRGTLLPGEILVEVIDEGPGIPEEEAARVFERFYRVDKARTRGQ 547

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +  R+    +  +  V    L 
Sbjct: 548 GVGLGLAIVKHIVEAHGGRVGVRSVPGNGSVFYFSLP 584


>gi|256848491|ref|ZP_05553933.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714758|gb|EEU29737.1| two-component sensor histidine kinase [Lactobacillus coleohominis
           101-4-CHN]
          Length = 620

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 28/226 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+ ++ + +E L      +  I  + +++++  +   I  +  +    
Sbjct: 380 QFVSNVSHELRTPLTSVKSYVEALSDGAWKDAEIAPQFLKVVQDETDRMIRMINDLLSLS 439

Query: 68  --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                          +   +   +D    +   E   +      +R            + 
Sbjct: 440 RMDSGTVKLNLEYVNINELFNYILDRFDMILKKETDPQQKKYTIQRKITQKDLWVEIDTD 499

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
              +++ N+   A    P GG +T  + ++KN  I S+   G      +           
Sbjct: 500 TFTQVIDNIMNNAVKYSPDGGVITARLMETKNHVIMSIADQGLGIPRKDIGHIFDRFFRV 559

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + I+         L 
Sbjct: 560 DKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSIEGKGSTFYISLP 605


>gi|261854763|ref|YP_003262046.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
 gi|261835232|gb|ACX94999.1| integral membrane sensor hybrid histidine kinase [Halothiobacillus
           neapolitanus c2]
          Length = 858

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 60/252 (23%), Gaps = 40/252 (15%)

Query: 1   MAKNICFNLSSMDLV--------------ALLCSRICHDIISPIGAIHNSLELLDEVGIE 46
           M +       ++ +               +   + + H++ +P+ AI    E+L E   +
Sbjct: 311 MQRTEELE-QALKIAGEARKEAEDANQTKSQFVANMSHELRTPLNAIIGYSEILLEESED 369

Query: 47  D------EVMQLIRLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQ 88
           D        ++ I  S    +  +                    +    +    +     
Sbjct: 370 DGNTQYAPDLERILNSGKHLLALVNDILDISRIEAGKMELYLESFPICREIQTVIDTARP 429

Query: 89  VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
           VI+              G       +  +ILLNL   A      G       ++  +   
Sbjct: 430 VIDKNQNSLVFECDDSLGHMRGDLTKFRQILLNLISNAAKFTQVGTLTLSVRREDTDHFT 489

Query: 149 FSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEII 202
            ++   G      E+  ++                   +        A      +     
Sbjct: 490 IAVADTGIGMN-EEQLGRLFQVFSQADASTTRKYGGSGLGLSISRHFARMMGGDITATST 548

Query: 203 DDHNVVLSALLE 214
                V +  L 
Sbjct: 549 PGSGSVFTVSLP 560


>gi|94970384|ref|YP_592432.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552434|gb|ABF42358.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 970

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 74/238 (31%), Gaps = 26/238 (10%)

Query: 1   MAKNICFN---LSSMDLVA--LLCSRICHDIISPIGAIHNSLELL--------DEVGIED 47
           M   +        +  L +  LL + + H++ +P+  I +  ++L            + +
Sbjct: 727 MTDRVELESQLAQAEKLSSIGLLAAGVAHEVNTPLAVISSYAQMLSKQLQGDERRSALLE 786

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTG 106
           ++      +S      L F R        VD    + D   +          +V+     
Sbjct: 787 KITTQTFRASEIVNNLLNFSRTGSSEFAEVDINKVVSDTLALLEHQLKTSRVKVENHLAP 846

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +        ++ LNLF+ A  ++P GG ++I+ ++        +   G+    PE 
Sbjct: 847 TLPKIYGNTGKLQQVFLNLFLNAKDAMPSGGTLSITTRN-GRAVEVEVCDTGSGI-APEH 904

Query: 164 FTQIVDGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +             +       +  E+  ++  +         +    
Sbjct: 905 IQRIYDPFFTTKKSPRQGHSGGTGLGLAVTYGIIQEHAGKIRVDSRPGEGTQFTMEFP 962


>gi|91772668|ref|YP_565360.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711683|gb|ABE51610.1| pleC (non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 456

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 66/223 (29%), Gaps = 25/223 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           +   + + H++ +P+ +I    ++L       + +   +       +    L  +     
Sbjct: 227 SEFLANMSHELRTPLNSIIGFSDVLYNESHGPLNEYQKKYTSNVLRNGKHLLDIINDILS 286

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SWTGEKIDLSRERAK 117
            +      + L   E ++ D I   + + +                          +  +
Sbjct: 287 ISNIETGTMELHINEFIVSDAIDEVESLMILIASEKDIDLTCNIDIGMPTIKTDMIKFKQ 346

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---- 173
           IL NL   A     +GG VTI  + S +    S+K +G     PE   ++ +   +    
Sbjct: 347 ILYNLVHNAIKFTDQGGSVTIGGKISDDLVHISVKDSGIGV-SPEDQDKLFNPFFQLDSS 405

Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V      +   +  E         + ++ 
Sbjct: 406 NARKYGGTGLGLALVKKFVEMHGGEIWVESEVGKGSTFTFIIP 448


>gi|312868489|ref|ZP_07728689.1| PAS domain S-box protein [Streptococcus parasanguinis F0405]
 gi|311096234|gb|EFQ54478.1| PAS domain S-box protein [Streptococcus parasanguinis F0405]
          Length = 450

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 28/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115
           +    +     L         I +     K                          + + 
Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +++ N+   A    P GGK+ + ++ +  + I S+   G      +   +I D      
Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMRTTDAQLIISISDEGLGIPKKDLP-RIFDRFYRVD 389

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +  ++K  +  +         + +L 
Sbjct: 390 KARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|296876106|ref|ZP_06900160.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912]
 gi|296432817|gb|EFH18610.1| sensor histidine kinase [Streptococcus parasanguinis ATCC 15912]
          Length = 450

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 65/225 (28%), Gaps = 28/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDDGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115
           +    +     L         I +     K                          + + 
Sbjct: 271 IDNETSQLDIELTNFTAFITFILNRFDKIKSQSQEDTKKYELIREYPITPIWVEIDTDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +++ N+   A    P GGK+ + ++ +  + I S+   G      +   +I D      
Sbjct: 331 TQVIDNILNNAIKYSPDGGKIKVGMRTTDAQLIISISDEGLGIPKKDLP-RIFDRFYRVD 389

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +  ++K  +  +         + +L 
Sbjct: 390 KARSRAQGGTGLGLAIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 434


>gi|91774312|ref|YP_567004.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91713327|gb|ABE53254.1| luxQ-like PAS sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
          Length = 371

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 61/244 (25%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEV------GIED 47
            K     + S  L A           + + H++ +P+ +I    +++          ++ 
Sbjct: 114 RKKAEEAMLSAKLAAEDANKSKSEFLANMSHELRTPLNSIIGFSDVISNESHGSLNELQK 173

Query: 48  EVMQLIRLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
           + +  +  +    +  +                    +  S         +  +  +   
Sbjct: 174 KFISNVISNGKHLLNIINDILSASQIETGKMELHISEFHVSESINEIEVLMIPIASEKNI 233

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
             K             + +  +I+ NL   A      G KV I  + S +    S+K +G
Sbjct: 234 ELKFNIDIGMPNIRADATKFEQIIYNLVNNAIKFTNEGEKVEIRGEISDDFVHISVKDSG 293

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 ++                      +    V      +  ++  E          
Sbjct: 294 IGISPDDQNKLFTPFFQVDSSNTREYGGTGLGLAIVKKYVEMHGGKVWVESEVGKGSTFG 353

Query: 211 ALLE 214
             + 
Sbjct: 354 FRMP 357


>gi|323499062|ref|ZP_08104042.1| hypothetical protein VISI1226_21029 [Vibrio sinaloensis DSM 21326]
 gi|323315897|gb|EGA68928.1| hypothetical protein VISI1226_21029 [Vibrio sinaloensis DSM 21326]
          Length = 675

 Score =  121 bits (304), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++EL+     ++     E ++ I
Sbjct: 430 LNQTRDKLIINEKLAALGELTAGIAHEINNPTAVILGNVELMQFELGEDAQRVQEEIEAI 489

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       ++    +  
Sbjct: 490 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPVIEESITLVKTGSKKRDINFVTDLQA 549

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M    ++                      I  ++  G    
Sbjct: 550 KASVEVNRHQLLQILVNLQMNGIHAMKGVGTLTISSEDWREGSECIGAIIHVEDQGCGI- 608

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +I      +  +   +       +  +    L  E       V S  L 
Sbjct: 609 KPENLKRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKVESQWGEGSVFSLYLP 663


>gi|298384034|ref|ZP_06993595.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298263638|gb|EFI06501.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 631

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 61/231 (26%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +     +  L +   + + H+I +P+ AI     +L ++    E+ +   +   + 
Sbjct: 398 LSEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPDIEDRKEMREYADIIETNT 457

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWT 105
            +                         +D    + +IEQ +   +  +       +    
Sbjct: 458 DLLLQLINDILDMSKIEAGTFDFCPSLIDVNQTMEEIEQSMRLRLKKETVTLTFTERLPE 517

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +++ N  + A      G           N   F +   G      E+  
Sbjct: 518 CTLYTDKNRLIQLISNFVINAIKFTQTGSIRMGYRLKDANTICFYVSDTGCGM-SEEQCK 576

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +        +    +      ++       +  E  +         L 
Sbjct: 577 HVFERFVKYNPFVQGTGLGLSICQMIIDRLGGTIGVESEEGKGSTFWFTLP 627


>gi|289432973|ref|YP_003462846.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
 gi|288946693|gb|ADC74390.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
          Length = 394

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K++     S  L ++  L + + H+I SP+ +I    E L      +E  + I     
Sbjct: 130 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 186

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107
            A+           F R              +    ++ E  + +   V           
Sbjct: 187 EALRAAKVVNNLRTFARSYEQEKKLCGLNDVIRKSIELREYELVIQNIVVELELAENLPA 246

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164
            +    +  ++L+N+ + A  ++ +           +D  N     ++ NG     PE  
Sbjct: 247 TLMDFYKIQQVLINMILNAEQAMYQAHGRGRLLIKTEDMGNFIRMIIEDNGPGI-SPEIA 305

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +  D     +       +  E+  ++  E            L 
Sbjct: 306 ERVFDPFFTTKEDSRGTGLGLSVCYGIIMEHDGKVQLESKLGQGTRFIIDLP 357


>gi|94266263|ref|ZP_01289969.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93453145|gb|EAT03613.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 662

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 16/227 (7%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           K I   +  +  L AL  + + I H+I +P+ +I + +++L E   +    + +     +
Sbjct: 428 KTIEDKIAQTEKLSALGRVAAGIAHEIGNPLTSISSFVQILKEQAGDKGTRENLDRIEHN 487

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKIDL 111
               +K +     ++      I   +I  +IE               ++QV    +   +
Sbjct: 488 IQRIIKILNQMSRFSKVPTMEIREHNINDLIESCLEIVKFDKKLKTVKLQVELADQLPPV 547

Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
             +     ++ +NL + A  ++   G            + +  +  NG      +   QI
Sbjct: 548 RVDDGNLIQVFINLILNAADAIGESGGTITIRTFEGQNQVVAQICDNGPGI-PEDLQNQI 606

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +      +       +  +    L  E       V   +L 
Sbjct: 607 FDPFFTTKEKGTGLGLSISYEIVKKFGGDLFVESQAGQGGVFFIILP 653


>gi|237721041|ref|ZP_04551522.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
 gi|229449876|gb|EEO55667.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_2_4]
          Length = 885

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 501 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 558

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 559 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 618

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 619 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLADNQIV-FHVTDTGTGI-EPEKVGRVF 676

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 677 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 724


>gi|195978500|ref|YP_002123744.1| TCS sensor kinase VicK [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
 gi|195975205|gb|ACG62731.1| TCS sensor kinase VicK [Streptococcus equi subsp. zooepidemicus
           MGCS10565]
          Length = 450

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +    T     +                             +   +    I L  +    
Sbjct: 271 IDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDDDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+ ++++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKIVVNMKTTDTQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  +++  +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHRGFIWAKSDYGKGSTFTIVLP 434


>gi|320162201|ref|YP_004175426.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319996055|dbj|BAJ64826.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 641

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 76/226 (33%), Gaps = 21/226 (9%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIR 63
            L  +   +     + HD+ SP+ AI   +EL++       ++ + ++ I++S  +    
Sbjct: 414 KLDQIK--SDFVHTVSHDLRSPLTAILGYVELIERVGTVNDLQRDFIRRIQVSVHNITSL 471

Query: 64  LKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKID---LS 112
           +  +          D+              +E   +        +Q+    +        
Sbjct: 472 VDDLLDLGRIEAGFDTRKEPVALDAIIRYSVEGFKKALGEKGHTLQLDLPAQAPSLLANP 531

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  +++ NL   A    P+GGK+ +S++   N+ +F +  NG      +          
Sbjct: 532 VQMRQMVDNLLDNAIKYTPQGGKIQVSLRVEGNQLLFQVSDNGIGIPPIDLPYVFDKFYR 591

Query: 173 ES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S     +    +    V  +   ++ R+  +         + +L 
Sbjct: 592 ASNAAPDVSGTGLGLAIVKSIVEAHEGRIWVDSAVGTGSTFTVVLP 637


>gi|163756741|ref|ZP_02163852.1| histidine kinase [Kordia algicida OT-1]
 gi|161323416|gb|EDP94754.1| histidine kinase [Kordia algicida OT-1]
          Length = 359

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 67/229 (29%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           + K    +   + +   + + I H++ +P+  I    ELL +    +          +  
Sbjct: 131 LLKRQMEHSDRLRIFGKITAGIAHELNTPLANILGFAELLKDDLKNNYQVTQDLDKIIDN 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEK 108
              +       + F          ++    + D   +++              ++     
Sbjct: 191 SIFAREVVKKLMFFACEMPQEIQKLNINPIIKDAISLLDASFKKASVNYTIKIINKELFL 250

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  +I+ NL + A    P+ G VTI    +    I  +   G      E   ++ 
Sbjct: 251 RADKIQLTQIIFNLIINAIYFSPKNGLVTIEAFQTSKNIILKVSDQGIGL-SKEALEKVF 309

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    D   +    V  +   +   +  +   ++    +  L K
Sbjct: 310 QPFYTTKPIGDGSGLGLSVVHGIVASHNGTITAKNNVENGATFTVTLPK 358


>gi|163943361|ref|YP_001642591.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163865558|gb|ABY46616.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 801

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + I H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAIAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +       +  +    +  + +++  +T     +  
Sbjct: 632 RIESITNEFMAVAKPQVVRIQPNDISVLTDQVLLILQPQAMMNNIQIRTDYTPGIPLIPC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        ++        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQIDKLDNDQISIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|149369868|ref|ZP_01889719.1| histidine kinase [unidentified eubacterium SCB49]
 gi|149356359|gb|EDM44915.1| histidine kinase [unidentified eubacterium SCB49]
          Length = 359

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 15/227 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIR 54
           K        + ++  + + I H++ +P+  I    ELL +   ++         +++   
Sbjct: 133 KRQMERADRLGILGEITAGIAHELNTPLANILGFAELLQDDLKDNPTALQDLDKIIKNAI 192

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110
            S       + F          V+ +  L     +++      +   V            
Sbjct: 193 FSREVVKKLMFFACEMPHEFKKVNIVPSLKSAMALLDASFKKAEVKYVVSIEDEELLLKA 252

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            + +  +I+ NL + A    P+ G V+I+   +K   + ++   G          +I   
Sbjct: 253 DTIQLTQIIFNLVINAIYFTPKNGLVSITATQTKKHIVLTISDEGTGIDAA-VQEKIFQP 311

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    +   +    V  +   +   +               L K
Sbjct: 312 FFTTKPTGEGSGLGLSVVHGIVASHGGTITATNNAKKGATFIVKLPK 358


>gi|222056634|ref|YP_002538996.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565923|gb|ACM21895.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 591

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 67/235 (28%), Gaps = 29/235 (12%)

Query: 9   LSSMD-LVAL---LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSM 58
           +S +  L A      + + H++ +P+  I    E L       +       +Q+I   + 
Sbjct: 355 ISDLKRLAATRRDFVANVSHELRTPVSVIQGYAETLLAGALESDPDRARRFIQVIHNHAE 414

Query: 59  SAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG 106
                +  +                 ++    +     ++               +  + 
Sbjct: 415 RLSALIADLLTLSELESGKVLLEPHPLNLRSAVKQAMSLLSQRATDKGITLDTGNIEASR 474

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +    +  ++L+NL   A    P  GKVT++ +D       S+   G      +   +
Sbjct: 475 FVLADKGKLDQVLVNLLDNAIKYTPGNGKVTVTAEDEAEMLKISVTDTGLGIPAKDLP-R 533

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I +                 +    V  +   +   +  + I       S  L+K
Sbjct: 534 IFERFYRVDEARSRDKGGTGLGLSIVKHIVQSHGGMISVKSIPGEGSTFSFTLKK 588


>gi|315920124|ref|ZP_07916364.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693999|gb|EFS30834.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 936

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 64/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    +  +    L  + + H+I +P+ AI    +LL E     E  + I++   +  
Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEDVAERQEYIKIVRENND 757

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
           +                       G VD  +   DI + +      D  + +        
Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAKEDVELVLDNPLPVCH 817

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +  + E  F +K  G      +     
Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYELKEGELEFYVKDTGIGIEKEQLPHIF 876

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924


>gi|260171812|ref|ZP_05758224.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 926

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 64/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    +  +    L  + + H+I +P+ AI    +LL E     E  + I++   +  
Sbjct: 690 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEDVAERQEYIKIVRENND 747

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
           +                       G VD  +   DI + +      D  + +        
Sbjct: 748 LLLQLISDILDLSKIEAGTFEFTNGDVDVNLLCEDIVRSMRMKAKEDVELVLDNPLPVCH 807

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +  + E  F +K  G      +     
Sbjct: 808 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYELKEGELEFYVKDTGIGIEKEQLPHIF 866

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 867 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 914


>gi|306827821|ref|ZP_07461091.1| sensor histidine kinase VicK [Streptococcus pyogenes ATCC 10782]
 gi|304429991|gb|EFM33030.1| sensor histidine kinase VicK [Streptococcus pyogenes ATCC 10782]
          Length = 450

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +    T                     L   +      +    R     +      + + 
Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|303325766|ref|ZP_07356209.1| sensor protein ZraS [Desulfovibrio sp. 3_1_syn3]
 gi|302863682|gb|EFL86613.1| sensor protein ZraS [Desulfovibrio sp. 3_1_syn3]
          Length = 601

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 60/237 (25%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRL 55
            +       S  L AL  L + + H+I +P+ +I        E L    +      ++  
Sbjct: 357 RRLQKQLRQSERLSALGNLAAGVAHEIRNPLSSIKGYATYLTEKLKNDKMAYATGNILIQ 416

Query: 56  SSMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +                    ++          ++  +    +     + +        
Sbjct: 417 ETERLNRVMSDLLSVAKPLDLRLQSVRIENVLEQAVRVISSDAEEKGVAVHLRLPRPGDG 476

Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNL 157
              ++ L  +R  + LLNL + A  +   GG +        +          S+   G  
Sbjct: 477 PQGEVRLDPDRLIQALLNLLVNAVQATEPGGSIEVALESGRAQAADGAFWSISISDTGCG 536

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   Q+      +      +       +   +   +            + LL 
Sbjct: 537 MSAQTV-AQLFTPYFTTKASGTGLGLVLTQQIVERHGGEIKVFSQPGKGSTFTILLP 592


>gi|265765483|ref|ZP_06093758.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254867|gb|EEZ26301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 919

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK     +  +    L  + + H+I +P+ AI     LL   +++    E +++++ ++ 
Sbjct: 684 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 741

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                  G  D  +   DI +  +  +     +          
Sbjct: 742 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGVELVFDPHPSDCT 801

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G  + +  +  +    F +   G      +     
Sbjct: 802 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 860

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S I    +       +  +    +  +  +         + 
Sbjct: 861 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 908


>gi|253563810|ref|ZP_04841267.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947586|gb|EES87868.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 929

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK     +  +    L  + + H+I +P+ AI     LL   +++    E +++++ ++ 
Sbjct: 694 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 751

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                  G  D  +   DI +  +  +     +          
Sbjct: 752 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGVELVFDPHPSDCT 811

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G  + +  +  +    F +   G      +     
Sbjct: 812 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 870

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S I    +       +  +    +  +  +         + 
Sbjct: 871 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918


>gi|229543965|ref|ZP_04433024.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
 gi|229325104|gb|EEN90780.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           coagulans 36D1]
          Length = 589

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 70/237 (29%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +P+  +    E + +        + E  ++I  
Sbjct: 355 MTEERKL----DKLRDDFIANVSHELRTPVAMLQGYSEAIIDDIAASEEEKKEFAKIIYD 410

Query: 56  SSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            ++     +  +       A  ++  ++ +     IE+V   F  + K   +    E  D
Sbjct: 411 ETLRIGRLVNELLDLARMEAGHFSFRMEPVSFNSFIERVTHKFNGIAKEKGIDLVCETSD 470

Query: 111 LS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L NL   A       G V +  +++       ++ NG+     + 
Sbjct: 471 SDLTLEIDADRIEQVLTNLIDNALRHTSSNGYVKVKEEEAPGGVYVHVEDNGSGIPDEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +    +           +       +   +  R+  +         S  L K
Sbjct: 531 PFVFERFYKADKARTRGKSGTGLGLAIAKNIVEGHGGRIFVKSKLGEGTTFSFFLPK 587


>gi|255691863|ref|ZP_05415538.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260622588|gb|EEX45459.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 888

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 60/230 (26%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +  +      S +L +   + + H+I +P+ AI     L+   D+        Q++  ++
Sbjct: 497 LQSSKEKAEMSDNLKSAFLANMSHEIRTPLNAIVGFSHLITESDDAEERKTYYQIVEANN 556

Query: 58  MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             +  +FG T   +    + D                   + 
Sbjct: 557 ERLLQLINEILDLSKIESGTIEFSFGLTSLHNLCQEIHDAHIFRTPEGVQLVYEPSDESL 616

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ NL   A      G               F +   G     PEK  +
Sbjct: 617 RIETDKNRVFQVISNLIGNAVKFTKEGSIKYGYELVDGQIV-FHVTDTGTGI-EPEKVGR 674

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +      +      +       +      ++    I       +  L 
Sbjct: 675 VFERFAKLNNHAQGTGLGLSICKSIVERLGGQISVSSIVGVGTTFTFTLP 724


>gi|218885805|ref|YP_002435126.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756759|gb|ACL07658.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 545

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 77/233 (33%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----------GIEDE 48
           +A N    L +  + AL    + I H++ +PI  +  S E L E            +  +
Sbjct: 290 LAVNQEHLLQARKMAALGTFTAGIAHELNNPINNVLLSAEGLREDYGEAIDADGQEMIGD 349

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSW 104
           +MQ    +S      L F R       ++     +G    ++++ + +          + 
Sbjct: 350 IMQQAERASDIVRNLLDFSRTEHPTFVALHPADVIGATVNLLKNQVMLSGISLAVHVPAD 409

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   R   ++ +NL +    + PRG     +++        F ++ +G      E 
Sbjct: 410 LPMVRGDLRSLQQVFMNLLLNGIQATPRGGAVAVVAMGVPPGHVAFEVRDSGPGI-PEEI 468

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I +    +        +       L H ++ R+     +    V + LL 
Sbjct: 469 REHIFEPFFSTKEVGKGTGLGLAVTYALVHRHEGRIEVHGGEGRGAVFTVLLP 521


>gi|146294958|ref|YP_001185382.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella putrefaciens CN-32]
 gi|145566648|gb|ABP77583.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella putrefaciens CN-32]
          Length = 707

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLS 56
           + +     +++  L AL  L + I H+I +P   I  ++EL+     ++  +  + I L 
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELMRYELGDNADLVKEEIDLV 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTG 106
               +     +R    Y+   +    L            +  V       +  +    + 
Sbjct: 512 IQQVMRISTIIRSLLQYSRPGEFNAPLEMQSITPIIEETMVLVRHSIKKQEVILITELSA 571

Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
             +         ++L+NL + A  ++               QD        ++  G+   
Sbjct: 572 TCLVQVNRPQLLQVLINLVINAAHAMDGKGRIWVRTYDWLQQDMPIGVKIEVEDEGSGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE   +I D    +  D   +       +       +          V +  L
Sbjct: 631 APELLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTVFTIGL 684


>gi|6689353|emb|CAB65452.1| VicK protein [Streptococcus pyogenes]
          Length = 452

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 213 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 272

Query: 69  LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +    T                     L   +      +    R     +      + + 
Sbjct: 273 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDKM 332

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 333 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 392

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 393 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 436


>gi|116753389|ref|YP_842507.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116664840|gb|ABK13867.1| PAS/PAC sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 377

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 70/229 (30%), Gaps = 24/229 (10%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAI 61
            L S+   +   S + H++ +P+  I++ +E+ ++        ++ E +QLIR  + + I
Sbjct: 143 ELDSIK--SEFVSMVSHELRTPLTVINSYIEMFEDGMLGDLTDVQKEKLQLIRSQTDTMI 200

Query: 62  IRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             +  M                  +        +  + ++                    
Sbjct: 201 QLVNDMLDILRIGSRRLRLKKELSSMEELIRSVIASLSRLAALKEHTITFRCERANTLIE 260

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              ++  ++L NL   A    P  G++ + +       + S++ NG   R  +K      
Sbjct: 261 CDPKKIMQVLSNLLTNAIKYTPDRGQIEVVLGGDAENVLVSIRDNGIGIREEDKDRIFEK 320

Query: 170 GNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             V S          +       +   +  R+  E            L 
Sbjct: 321 FFVMSNEKSADIGMGLGLSITKDIVEAHGGRIWFESRFGEGSTFYFTLP 369


>gi|118581551|ref|YP_902801.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
            2379]
 gi|118504261|gb|ABL00744.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
            2379]
          Length = 1309

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 32/244 (13%)

Query: 2    AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
             K     + +  L A+  L + I HD  + +  I    EL    + E       M+ +  
Sbjct: 917  KKLEEQLIQAQKLEAIGTLAAGIAHDFNNILSGIMGYTELSLNKVKEQPKVYRNMEQVLT 976

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEK 108
            ++  A   +K +               +  I Q +  F+       +         +   
Sbjct: 977  AANRAKDLVKQILTFCRKAHHETKPTSVIPILQEVAKFMRASLPATIELKLRIETESDII 1036

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTISV----------------QDSKNENIFSLK 152
            I  S +  ++L+NL   A  ++   G V                      + +    S++
Sbjct: 1037 IADSSQLHQVLVNLCTNAGYAMKDKGGVLEICLADVTVDSRTLPQGSTFAAGHCLELSVR 1096

Query: 153  INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             +G     PE   +I D    +    +   +    V  +   +   +          V  
Sbjct: 1097 DSGMGI-EPENLPRIFDPYFTTKGPGEGTGLGLAMVHGIIKSHGGDIRVYSELGKGTVFR 1155

Query: 211  ALLE 214
              L 
Sbjct: 1156 IYLP 1159


>gi|15674629|ref|NP_268803.1| two-component sensor histidine kinase [Streptococcus pyogenes M1
           GAS]
 gi|21909909|ref|NP_664177.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS315]
 gi|56808929|ref|ZP_00366637.1| COG5002: Signal transduction histidine kinase [Streptococcus
           pyogenes M49 591]
 gi|71903090|ref|YP_279893.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS6180]
 gi|71910249|ref|YP_281799.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS5005]
 gi|94989946|ref|YP_598046.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS10270]
 gi|209559000|ref|YP_002285472.1| Two-component sensor histidine kinase [Streptococcus pyogenes
           NZ131]
 gi|13621742|gb|AAK33524.1| two-component sensor histidine kinase [Streptococcus pyogenes M1
           GAS]
 gi|21904097|gb|AAM78980.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS315]
 gi|71802185|gb|AAX71538.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS6180]
 gi|71853031|gb|AAZ51054.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS5005]
 gi|94543454|gb|ABF33502.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS10270]
 gi|209540201|gb|ACI60777.1| Two-component sensor histidine kinase [Streptococcus pyogenes
           NZ131]
          Length = 450

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +    T                     L   +      +    R     +      + + 
Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|311067401|ref|YP_003972324.1| signal transduction histidine kinase with CheB and CheR activity
            [Bacillus atrophaeus 1942]
 gi|310867918|gb|ADP31393.1| signal transduction histidine kinase with CheB and CheR activity
            [Bacillus atrophaeus 1942]
          Length = 1182

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 13/225 (5%)

Query: 2    AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQ 51
             ++    + S  L A+  L + I H+I +P+ ++   L+L+        D   +      
Sbjct: 955  KQSEKMLMKSEMLSAIGQLAAGIAHEIRNPLTSLKGFLQLMIQSKKYQKDYAEVMMSEFV 1014

Query: 52   LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKID 110
             +       ++  +   + F      D +  +  I +       V     ++    +   
Sbjct: 1015 RLESIINEFLVLSRSKSVQFETIQINDIVEDVSLILESQAMLKGVRVIKNLNDKLPDIKG 1074

Query: 111  LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +  E  ++ LN+   A  S+ +    + I           + +  G      E   ++ +
Sbjct: 1075 VPNELKQVFLNVLKNAIESMEQIEGDIHIHTVYQNGYIQLTFEDQGKGI-SKEMMERLGE 1133

Query: 170  GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +       +   +K  +  E I++    ++  L 
Sbjct: 1134 PFYTTKEKGTGLGLMVSFKIIESHKGTIEFESIENQGTKVTIKLP 1178


>gi|296132739|ref|YP_003639986.1| multi-sensor signal transduction histidine kinase [Thermincola sp.
           JR]
 gi|296031317|gb|ADG82085.1| multi-sensor signal transduction histidine kinase [Thermincola
           potens JR]
          Length = 598

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 26/231 (11%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
            +  L  +     S + H++ +P+ AI    E L     ++  I  +   +IR  +    
Sbjct: 364 EAEKLEQMRKDFVSDVSHELRTPLTAIRGYNEALSDGTVEDPEIRQKYHNIIREETQRLE 423

Query: 62  IRLKFMRLAFG--------YTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112
             +  +                 +D    +     ++          V++        + 
Sbjct: 424 RLIHDLLDLSRLQSGKISLELEPLDVGAVIRSTVEKLEPQINIKGIAVELDIPQNIPYIM 483

Query: 113 ---RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK---FT 165
                  ++L+ L   A      GGK+ +SV D   +    ++   G      +    + 
Sbjct: 484 GNEDRLVQLLIILLDNAVRYTDAGGKIFVSVGDVGLKGVEIAITDTGKGIPKEDIPFIWE 543

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +   T       +       +   +   +  E           +  
Sbjct: 544 RFYKVDKSRTRTGAGTGLGLAIARQIVELHHGTIEVESELGRGTTFKIVFP 594


>gi|322419596|ref|YP_004198819.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125983|gb|ADW13543.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 407

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            +     LS  + L  L  + + + H+I +P+  I    +++     E       +    
Sbjct: 179 EERHQEELSRRETLAKLGEMGAVLAHEIRNPLAGIKGFAQVIAARPTEARNASFAQSIVT 238

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEK 108
            A+     +     Y     +      + +++E  ++          V            
Sbjct: 239 EAVRLENLVNDLLAYAAIEPAAGETFPLAELLEQTVSLLEPEAASSGVGITTDCRQELVI 298

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   + +LNL   A  ++P GG++ ++    + E + + +  G+     E    + 
Sbjct: 299 YGNRDRIEQAMLNLGRNALQAMPEGGELRLTATMKEGEAVITFEDTGHGI-AEEHNALVF 357

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +   +   +  +        ++  L 
Sbjct: 358 EPFFTTRARGTGLGLALCKKIVEGHGGSITLKSELGVGTTVTVTLP 403


>gi|88603925|ref|YP_504103.1| multi-sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
 gi|88189387|gb|ABD42384.1| Cache sensor signal transduction histidine kinase [Methanospirillum
           hungatei JF-1]
          Length = 646

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 16/236 (6%), Positives = 69/236 (29%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
            +N       +    L  + + H++ +P+ +I     ++ +         +++ + +++ 
Sbjct: 408 ERNRAEEADQLKSAFL--ATMSHELRTPLNSIIGFTGIILQGLAGPLNKEQEKQLGMVQD 465

Query: 56  SSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTG 106
           S+   +  +  +                 V+    +      + +        + V  + 
Sbjct: 466 SARHLLALINDVLDISKIEAGELNISREPVNIQKSIESVCTTLRKSAEDKGLSLHVDISP 525

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKF 164
           +   +  ++ +I   L  + + ++    +  + V+    +     S+   G      E+ 
Sbjct: 526 DTGFIIGDQRRIEQILINLINNAIKFTERGYVCVKSSLREKNVCISVSDTGIGI-SEEEM 584

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++               +   +       L   +   ++           + +L 
Sbjct: 585 KKLFRPFQQIDTGTTRKHEGTGLGLSICKKLVELHGGTIMVTSEPGKGSEFTVILP 640


>gi|294500794|ref|YP_003564494.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|295706139|ref|YP_003599214.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294350731|gb|ADE71060.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294803798|gb|ADF40864.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 466

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 68/220 (30%), Gaps = 13/220 (5%)

Query: 6   CFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS 57
                S  L  V+ L + + H+I +P+ AI   ++LL       E   +  + +L R+ S
Sbjct: 240 EMASKSEKLTMVSKLAAGVAHEIRNPMTAIKGFIQLLKASKQYNEEYNDIMLEELNRVES 299

Query: 58  MSAIIRLK---FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +           +  ++        +  +  +     ++       ++S           
Sbjct: 300 IIQEFLTLAKPKIENSYHPKSLNQIIRHVTLLLDTHANYKNCRIINEISDEITIFCEENA 359

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             ++ +NL   A  S+ +G       + ++   +  ++  G          ++ +    +
Sbjct: 360 LKQVFINLIQNALESMSKGTVKVTVEKRNEYG-MVIIEDEGCGIDEQSL-ARLGEPFYST 417

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +  +++  +           +   L 
Sbjct: 418 KQTGTGLGLMISYRIIEQHQGHISFASKVGVGTKVEIALP 457


>gi|153807836|ref|ZP_01960504.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185]
 gi|149129445|gb|EDM20659.1| hypothetical protein BACCAC_02120 [Bacteroides caccae ATCC 43185]
          Length = 1348

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 61/235 (25%), Gaps = 20/235 (8%)

Query: 1    MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            + +    NL  ++   L   S I H+  +P+  I +  E+L +  I    +    L    
Sbjct: 798  LERKEKENLEKINQAKLQFFSNISHEFRTPLTLIISQSEVLMKSRISSISLSNKILDIYR 857

Query: 60   AIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                L  +             ++    +                E         Q S   
Sbjct: 858  NSQLLMNLISELLDFRKLEQGQMQLKVSKQDIVSFVNEIFLSFKEYASNKQIEYQFSSNE 917

Query: 107  EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160
             K+    +  ++    F     A     +  +V + +++        +   G        
Sbjct: 918  PKVYCWFDAKQLQKVFFNLLSNAFKYTKKNDRVIVQIENESQIIKIKVIDTGIGIDREYL 977

Query: 161  PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +    +  +   S  I       +   +   +  +    +       L+K
Sbjct: 978  EHIFERFYQVSSITRTPSTGIGLALSKAIVEMHHGIIEVDSTPGNGSTFIVTLQK 1032


>gi|150398896|ref|YP_001322663.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150011599|gb|ABR54051.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 620

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRL 55
           +     L  +D L + L + + H+I +P+ +I   +EL+ +         + + +   R 
Sbjct: 381 EEKNTELKKLDDLKSDLIAIVSHEIRTPLTSIKGYVELVLDEAVGKINNSQRKCLTTARE 440

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTG 106
           + +     +  M            +                 +       +  + +    
Sbjct: 441 NVVRLNRLISSMLDLSKLAKGELEMHREEINIKKTIDEVIDDLKPISAEKNINITLEIDD 500

Query: 107 EKIDLSRERA-KILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPE-- 162
             I+  ++R  ++ +NL   A    P    + I   ++   +   ++K NG      +  
Sbjct: 501 IIINADKDRMKQVFINLIENAIKFSPENEIIEIKGKEEYHGDVSITVKDNGEGIPKDKLE 560

Query: 163 -KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +    ++          +       +   +   +  +           +L K
Sbjct: 561 KVFDRFYQADLSPKRKGKGTGLGLAVCKSIIQAHGGSIWVKSEIGKGCTFYIVLPK 616


>gi|229154352|ref|ZP_04282472.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342]
 gi|228629176|gb|EEK85883.1| hypothetical protein bcere0010_5520 [Bacillus cereus ATCC 4342]
          Length = 463

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 58/219 (26%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++  +     E                +          
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGE----KIDLSRERAKILL 120
           ++           + L      I    + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPSTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|160885983|ref|ZP_02066986.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
 gi|156108796|gb|EDO10541.1| hypothetical protein BACOVA_03989 [Bacteroides ovatus ATCC 8483]
          Length = 808

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYESSDESLMI 553

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 611

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFGKGTTFTFTLP 659


>gi|89098586|ref|ZP_01171469.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus sp. NRRL B-14911]
 gi|89086831|gb|EAR65949.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus sp. NRRL B-14911]
          Length = 469

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--LIRLSSM 58
           +       S  L     + + + H+I +P+  I   ++L  +    +      +I   + 
Sbjct: 244 ETNELLRRSEKLAVVGQMAAAVAHEIRNPLTPIKGFMQLFSDGRDFNPAFSSIIINEINR 303

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
              I  +F+ LA  ++  V+ L     I  V++  +          T E  +        
Sbjct: 304 IDNIITEFLALAKPHSTKVEVLDLNDVIRHVVDLMMPQALMNNKELTFEPGNGPYPLLGD 363

Query: 116 ----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                ++ +N+   A  ++   G   IS   +  E    +K +G      E+   + +  
Sbjct: 364 PNSLKQLFINIIQNALDAIEEKGSSIISTVKADGELCAIIKDSGCGI-PAERLANLGEPF 422

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +A ++  R+  E  +     +     
Sbjct: 423 YSTKEKGTGLGLMTSYKIADDHHGRVKVESDEGKGTTVRVYFP 465


>gi|307718837|ref|YP_003874369.1| hypothetical protein STHERM_c11530 [Spirochaeta thermophila DSM
           6192]
 gi|306532562|gb|ADN02096.1| hypothetical protein STHERM_c11530 [Spirochaeta thermophila DSM
           6192]
          Length = 632

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 69/242 (28%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     L S  + A+  L   + HD  + +  I    +L+ +    D  ++       
Sbjct: 249 LRERERQLLQSQKMEAVGRLAGGVAHDFNNLLTVIMGYSKLILQGLPADSPLRSDVQEIQ 308

Query: 59  S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGE 107
                        L F R        VD    L ++E+++   +  D  +    ++ +  
Sbjct: 309 RATLRSSHLIRQLLLFSRHQMAQPEVVDLNELLREMERLLRRVLREDIALTLSCLAGSAR 368

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLK 152
                 +  ++++NL + A  ++P GG +TI  ++                    +  + 
Sbjct: 369 VYVDPAQFEQVVVNLAVNARDAMPDGGMLTIQTRNEVLREERKGALVSVPPGEYVVLDVS 428

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G+                    +   +    V  +       +            S  
Sbjct: 429 DTGSGIPPAILPRIFEPFFTTREDEGTGLGLSTVYAVITGAGGFVDVSSTPGRGTTFSLY 488

Query: 213 LE 214
           L 
Sbjct: 489 LP 490


>gi|89095093|ref|ZP_01168020.1| C4-dicarboxylate transport sensor protein, putative
           [Oceanospirillum sp. MED92]
 gi|89080654|gb|EAR59899.1| C4-dicarboxylate transport sensor protein, putative
           [Oceanospirillum sp. MED92]
          Length = 681

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 78/232 (33%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM---- 50
           + +     + +  + A+  + + + H++  P+ AI N +    ++L +  +  E +    
Sbjct: 448 LQEAQDELVQAGKMAAIGRMSTAVVHELNQPLTAIRNYVAICRQMLQQPEMLSESLTEVD 507

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKI 109
           +L +  +        F          V   + + +   +  + FI    +V +      +
Sbjct: 508 ELTQRMAQITSQLKTFAYRKPEQMEKVSVQMAVNNALHLFRQRFIDDGFQVDLDLPEPTV 567

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKF 164
            +  +     ++LLNL   A  ++       I++Q     ++   ++  +G      +  
Sbjct: 568 YVLGDSARLEQVLLNLIKNALDAMQGFDHKQIAIQVDAVDDKVRVTVVDSGPGIDM-DLL 626

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +  V S    D   +    V  +  +    +  E           +L 
Sbjct: 627 PDLFEPFVTSKSIGDGLGLGLSIVRSIVRDLNGEISAENQTGGGACFRVILP 678


>gi|332522355|ref|ZP_08398607.1| PAS domain S-box protein [Streptococcus porcinus str. Jelinkova
           176]
 gi|332313619|gb|EGJ26604.1| PAS domain S-box protein [Streptococcus porcinus str. Jelinkova
           176]
          Length = 452

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115
           +    T     +         I +                 +   +  + I L  +    
Sbjct: 271 IDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVAGKTYEIIRDYPIKSIWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+ + ++ + ++ I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKIRVKMKTTDSQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSDYGKGSTFTIVLP 434


>gi|218132753|ref|ZP_03461557.1| hypothetical protein BACPEC_00614 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992479|gb|EEC58482.1| hypothetical protein BACPEC_00614 [Bacteroides pectinophilus ATCC
           43243]
          Length = 383

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 72/239 (30%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           +  N    + +      L   I HD+ +P+ AI   +E LLD V    E  +    +  +
Sbjct: 130 LKNNAEEKIKAESEEKELIRNISHDLKTPLTAIKGYVEGLLDGVADTPEKREKYLKTIYN 189

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------- 102
               +  +         +D         ++  +    D   ++                 
Sbjct: 190 RASDMDKLIDELTMYSRIDMNRVPYTFTKIDINHYMEDCCEEIGLELETKGISMEYHNFS 249

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
           +     +    +  +++ N+   +   +      + I + +  +  +  ++ NG      
Sbjct: 250 NEEQYVMIDIEQMKRVINNIISNSVKYMSDRKGMIRIELFNDGDYALIRIEDNGKGISPE 309

Query: 162 E---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  E+   +  E  +    V++  L+K
Sbjct: 310 DLKHVFERFFRADSSRNSKQGGSGIGLAIVKKVIEEHGGMIWAESKEGIGTVMNIRLKK 368


>gi|196232624|ref|ZP_03131476.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223386|gb|EDY17904.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 375

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 54/239 (22%), Gaps = 29/239 (12%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +     L   +      L S + H++ +P+  I    E L +        +         
Sbjct: 131 QEKNAELERANQAKDRFLAS-MSHELRTPLNGIIGFAEFLADGKPGPVNGKQKEYLEDIL 189

Query: 61  IIRLKFMRLAFGYTGSVDSLI---------------GLGDIEQVIEDFIAVDKRVQVSWT 105
                 + L       V                          V          V V   
Sbjct: 190 NGGRHLLHLINDMLDLVKVQAGKLELHLATFRIEDAIEEVCAGVRPLADNKRIGVHVEIA 249

Query: 106 GEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFP 161
                ++ +     ++L NL   A      GG+V + V+    +    S++  G   +  
Sbjct: 250 PGFSPITHDEQRFKQVLYNLLSNAIKFTDDGGQVEVKVEQRGADRFCLSVRDTGIGIKPE 309

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++                   +       +       +  E         S  L 
Sbjct: 310 DI-QRLFVEFEQLETGHARRFGGTGLGLALTRKIVELKGGTISVESAVGRGSTFSVTLP 367


>gi|153003749|ref|YP_001378074.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027322|gb|ABS25090.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 453

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 56/236 (23%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+ +   +        L + + H++ +P+  I  +LEL  E  ++     L  + +   
Sbjct: 211 MAERLERLVRGEQ---ELLANVSHELRTPLARIRVALELAAEGDVDRARRFLAEIGTDLD 267

Query: 61  --IIRLKFMRL-------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                ++ +                      VD  + L +      +         +   
Sbjct: 268 ELDRLVEDVLAAARLDLAAGGGPAWPVTRARVDLDVVLAEAAARFREAHPARTLDLLLPE 327

Query: 106 GEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +++ NL   A         V ++           ++  G      + 
Sbjct: 328 SLPAVDGDAALLRRLVANLLDNAAKYSEPPAPVALAAGARDGGIELEVRDQGIGIDPDDL 387

Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +       +A  +   +  E           +L 
Sbjct: 388 SRVFTPFFRTDRSRARGTGGVGMGLALARRIAEAHGGTITVESTPGRGTTFRVVLP 443


>gi|294494798|ref|YP_003541291.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292665797|gb|ADE35646.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 599

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 25/235 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMS 59
           ++      +    +   + + H++ +P+ +I    ++L++     ++++ ++       S
Sbjct: 359 QSKVLAEQANRTKSEFLANMSHELRTPLNSIIGYSQILNQNPSGNLDEKELKYSHNILNS 418

Query: 60  AIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104
                                       V+    + DI  +++          + +  S 
Sbjct: 419 GEHLLELINSILDISKVEAGKMEYEPERVNLPETIDDIIGLVKPLAMKKSIDIRFINNSA 478

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +      +  +IL NL   A    P  G+V I +         S+   G      EK 
Sbjct: 479 IAKVWVDRVKFKQILHNLLSNAIKFTPEKGEVKIYLSTDDGTAQISVADTGIGI-PAEKI 537

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             I D             +   +    V      +   +  E         +  L
Sbjct: 538 EDIFDPFKQVNSSSSREYEGTGLGLALVKKYVEMHDGEIWVESEVGAGSTFTFTL 592


>gi|187933989|ref|YP_001885394.1| two-component sensor histidine kinase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722142|gb|ACD23363.1| sensor histidine kinase [Clostridium botulinum B str. Eklund 17B]
          Length = 562

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 64/223 (28%), Gaps = 17/223 (7%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRL 64
           +  ++L      + + H++ +P+ +I    E L   ++    ++ + +I   S      +
Sbjct: 338 IKKLELMRTQFVANVSHELKTPLTSIKGFAETLRYVEDNETREKFLNIIDKESERLSRLI 397

Query: 65  K----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                       +            +  + ++ + + +  A++           +    +
Sbjct: 398 NDILVLSSIESNISTQNDEFLPKSIIEDVINMVRKLANNKAINLEFYDDNQELILGDKDK 457

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++ LNL   A      G  V +     +      +  NG      +    F +    +
Sbjct: 458 FYQLTLNLVENAIKYSENGSNVKVISYSKQGNYYLEISDNGLGIPKEDLPRIFERFYRVD 517

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +       +  + I     +    ++
Sbjct: 518 KSRKKGGTGLGLAIVKHIVKTFNGDINVKSILGEGSIFKVRIK 560


>gi|154248554|ref|YP_001419512.1| multi-sensor hybrid histidine kinase [Xanthobacter autotrophicus
           Py2]
 gi|154162639|gb|ABS69855.1| multi-sensor hybrid histidine kinase [Xanthobacter autotrophicus
           Py2]
          Length = 857

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 69/244 (28%), Gaps = 31/244 (12%)

Query: 2   AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            K +      S  L A+  L   + HD  + + AI    +LL     +       +  I+
Sbjct: 471 QKQLEAQFAESQKLQAVGHLAGGVAHDFNNILTAILGYCDLLLVKHRQSDPSFPDIMQIK 530

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            ++  A   +  +         +  +I L D+       +      +++   +       
Sbjct: 531 QNANRAAGLVGQLLAFSRRQTLLPQVIELTDVISDAAALLRRLIGERITLEVQHARDLWP 590

Query: 114 ------ERAKILLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKI 153
                 +  ++++NL + A  ++P G                         +  +  +  
Sbjct: 591 VKVDKNQFEQVIINLVVNARDAMPDGGTLTVRTANVPAAASTAYGQRLPEGDYVLVEVAD 650

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G     PE   +I +    +        +    V  +  +    +L E           
Sbjct: 651 TGTGI-PPEVMGKIFEPFFSTKEVGKGTGLGLSTVYGIVEQTGGTILAESTLGEGTTFRV 709

Query: 212 LLEK 215
            L +
Sbjct: 710 FLPR 713


>gi|228948417|ref|ZP_04110700.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228811404|gb|EEM57742.1| hypothetical protein bthur0007_45430 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 484

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVWSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|147678165|ref|YP_001212380.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274262|dbj|BAF60011.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 467

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 71/225 (31%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK- 65
            ++ +   + + H++ +P+ +I    E L     +E       +++I   +      +  
Sbjct: 232 QEMRSEFVANVSHELRTPLTSIRGFAETLLDGALEEPDTARRFLEIINSETERLSRLIDE 291

Query: 66  -----FMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116
                 +             +       +  +    +  +  ++++   +   +  +   
Sbjct: 292 LLNLSRLESHKWVPKRQPVNMGELIKRAVAILQPRAVEKNLAIKINLPEDLPVVQGDPDM 351

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171
             ++LLNL   A      GG+V+IS   +++E    +K NG           F +    +
Sbjct: 352 LSQVLLNLIENAVVYTQAGGEVSISAAATQDEMKVDVKDNGIGIPPESLSRVFERFYRVD 411

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  +   ++  +  E         S ++ 
Sbjct: 412 KARSREQGGTGLGLSIVKHIIDAHRGSVQVESKVGIGSTFSFVIP 456


>gi|134298201|ref|YP_001111697.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134050901|gb|ABO48872.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 480

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 57/211 (27%), Gaps = 19/211 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
            H++ +P+ +IH  LE+L              ++ +   S      +  + L      + 
Sbjct: 269 SHELRTPLTSIHGFLEVLLRGAANQPDQLNKALKSMYGESERMNKLVHDLLLLTKLDHAP 328

Query: 78  DSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
              +              Q+         ++ V    E    + +  +++LNLF  A   
Sbjct: 329 RLEVKEGFLDTVIQEMEPQLCILAGNRRLQLMVDSNIECKFDTDKMKQVILNLFHNAVQH 388

Query: 130 LPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQF 183
                         + +    S++ NG   +       F +    +           +  
Sbjct: 389 TDPEKGEIKISLYKRTDGVQLSVEDNGPGIKDFHLPKVFDRFYRIDASRTRRHGGAGLGL 448

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +   +  E ++         L 
Sbjct: 449 AITKAIIDAHGGTINVESLEGTGSTFHIWLP 479


>gi|147669744|ref|YP_001214562.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146270692|gb|ABQ17684.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 394

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K++     S  L ++  L + + H+I SP+ +I    E L      +E  + I     
Sbjct: 130 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 186

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKID 110
            A+           F R              +    ++   + +  +  V++        
Sbjct: 187 EALRAAKVVNNLRTFARSYEQEKKLCGLNDIIRKSIELREYELVIQNIVVELDLAENLPA 246

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164
              +     ++L+N+ + A  ++ +           +D  N     ++ NG     PE  
Sbjct: 247 TLMDFYKIQQVLINMILNAEQAMYQAHGRGRLLIKTEDMGNFIRMIIEDNGPGI-SPEIA 305

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +  D     +       +  E+  ++  E            L 
Sbjct: 306 ERVFDPFFTTKEDSWGTGLGLSVCYGIIMEHDGKVQLESKLGQGTRFIIDLP 357


>gi|295084122|emb|CBK65645.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 810

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 63/226 (27%), Gaps = 17/226 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     E  + I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                        +VD      +I + +   +     + +     +  
Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKVGKGVELILEEPFPECY 697

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     +++ N    A     +G       Q    +  F ++  G      ++ +  
Sbjct: 698 IYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVPHQKIKFYVRDTGMGIPEEKQKSVF 757

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  + +    +       +  +    +  +  +         
Sbjct: 758 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGVGSCFWFT 803


>gi|289432105|ref|YP_003461978.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
            sp. GT]
 gi|288945825|gb|ADC73522.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
            sp. GT]
          Length = 1062

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 17/229 (7%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            M + +      M  V  L S + H+I +P+  I    ELL    +E+ + + I+     A
Sbjct: 818  MEQQLIMT-DRMASVGELASGLAHEINNPLTGIVGFSELLLMNELEESIKEDIQTIHREA 876

Query: 61   II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112
            +         L F R       + D  + +  + ++ +    ++    +     +   + 
Sbjct: 877  LRAAEIVRNLLTFARQHTPTREASDINLSVHKVLELRKHDHRINNIRCLTDLDPDLPRVM 936

Query: 113  RERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             +  +I   L  +   +     L    ++TI         I S+  NG     PE   +I
Sbjct: 937  LDFFQIQQVLINIIINAEFFLRLKDHPQITIKTSQHNGYVIISISDNGPGI-SPENMKRI 995

Query: 168  VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D    +        +       +  E+  ++  E    +       L 
Sbjct: 996  FDPFFTTKEVGKGTGLGLSICHGIIEEHHGKISVESTLGNGATFRIELP 1044


>gi|154490237|ref|ZP_02030498.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
 gi|154089129|gb|EDN88173.1| hypothetical protein PARMER_00469 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K    NL      A L         + + H+I +P+ AI    EL+     ++E  +  
Sbjct: 322 RKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMAFADSDEERREYY 381

Query: 54  RLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            +   + ++ ++                      VD    +  I   I+  +    ++ +
Sbjct: 382 EIIKTNNLLLMQLINDILDLSKIEADAIRISYEPVDINGLMDTIFASIKLRMPEGVQLFL 441

Query: 103 SWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                      +     +++ NL   A  +  +G               F +K  G    
Sbjct: 442 EKGSCTCCFGADSIRLLQLINNLANNAIKNTKQGSITLGYTCLPDKCLEFYVKDTGTGIA 501

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +        +   +   +       L  +    +  E         S +L 
Sbjct: 502 KDKLESLFTRFVKVNDYVEGIGLGLAICQGLVTKMGGSMHVESELGVGSTFSFVLP 557


>gi|60680336|ref|YP_210480.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491770|emb|CAH06528.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 919

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK     +  +    L  + + H+I +P+ AI     LL   +++    E +++++ ++ 
Sbjct: 684 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 741

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                  G  D  +   DI +  +  +     +          
Sbjct: 742 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGIELVFDPHPSDCT 801

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G  + +  +  +    F +   G      +     
Sbjct: 802 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 860

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S I    +       +  +    +  +  +         + 
Sbjct: 861 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGARFWFTIP 908


>gi|298481294|ref|ZP_06999487.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272498|gb|EFI14066.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 810

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 63/227 (27%), Gaps = 19/227 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     E  + I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGE 107
           +                        +VD      +I + +   ++    +          
Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKVSKGVELIFEEPLPECY 697

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ N    A     +G       Q S  +  F ++  G      EK   I
Sbjct: 698 LYTDKNRFTQVISNFINNALKFTQQGCITLGYKQVSHQKIKFYVRDTGMGI-PEEKQKSI 756

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +  V   + +    +       +  +    +  +  +         
Sbjct: 757 FERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGVGSCFWFT 803


>gi|294645005|ref|ZP_06722736.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806981|ref|ZP_06765803.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292639654|gb|EFF57941.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445816|gb|EFG14461.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 862

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 626 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEITQFIGTINK 685

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +            +   + +  R+  S
Sbjct: 686 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 745

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G         +        ++  G       
Sbjct: 746 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 805

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +       +            +  L 
Sbjct: 806 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 858


>gi|134096599|ref|YP_001101674.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans]
 gi|133740502|emb|CAL63553.1| putative sensor histidine kinase [Herminiimonas arsenicoxydans]
          Length = 678

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 63/234 (26%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + K     + +  L A+  + + + H+I +P+  +  +L++L +            ++L+
Sbjct: 443 LVKAQQQLVLAEKLAAIGEITAGVAHEINNPVAVLQGNLDVLRDTLGAAATPVQGELRLM 502

Query: 54  RLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                     +  +                   + ++    + + + +   ++       
Sbjct: 503 DQQIHRINTIVTKLLQFASPGEFAGYVEAIAVDEVVVDTLVLVRHLLNQSNIEVVHNRHA 562

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLAR 159
           T        E  ++L+NLF  A  ++                        ++   G   +
Sbjct: 563 TLAVHINRGELQQVLINLFTNAVHAMKNGGRLTIESRDWIDDAGARGVTINVIDTGAGIK 622

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++                 +       L       +  +  +      +  L
Sbjct: 623 KEDQARIFDAFFTTKRQGGTGLGLSISYTLVARYGGTITVKSEEGVGTEFTVRL 676


>gi|313681084|ref|YP_004058823.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
 gi|313153799|gb|ADR37650.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
          Length = 419

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 58/200 (29%), Gaps = 4/200 (2%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           +  + + H++ +P+  +   LE L +   + E +     ++      +  +         
Sbjct: 216 VFLAEVSHELRTPLTVLAGYLERLRKRPGDTEALAGAERTARHLTRLVGDLLALARGEAE 275

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--LSRERAKILLNLFMVAHASLPRGG 134
                 + D+ ++     A    V +                ++L NL   A  +  R  
Sbjct: 276 RTVNPHIVDLAELASGVTAGFPGVGLELRAAPEVLGDPDRLIQLLRNLVANAVRAAGRPE 335

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194
            V ++V +        +  +G     PE    + +           +       +A  ++
Sbjct: 336 GVRVTVGEDDGRAWVEVADDGPGI-DPEVLPHLFERFARGPEGGTGLGLAIAKQIAEAHE 394

Query: 195 IRLLPEIIDDHNVVLSALLE 214
             +       H  V    L 
Sbjct: 395 GTITVRSRPGH-TVFRVELP 413


>gi|188582204|ref|YP_001925649.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
 gi|179345702|gb|ACB81114.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
          Length = 571

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 73/241 (30%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQLIR- 54
           + +     + +  + +L  L + I H+I +P+  I     ++E L       E  +  R 
Sbjct: 327 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLSELPPPEAPEGQRA 386

Query: 55  ----------------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
                                 +   KF RL  G  G V+    +  +  +I+  +    
Sbjct: 387 LTKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 446

Query: 99  RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            V   ++G            ++++N+   A  ++   G +T++       ++  +   G 
Sbjct: 447 HVHRDFSGRPEISCTPALLNQVVMNILGNAADAVHGEGTITVATYSDAETDVIRISDTGP 506

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +       +   +   L  E            + 
Sbjct: 507 GI-PEDLREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLTVETAPGGGASFVIGIP 565

Query: 215 K 215
           +
Sbjct: 566 R 566


>gi|311029534|ref|ZP_07707624.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 422

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 62/224 (27%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +N      ++ +V  L + I H+I +P+ A+   ++LL     ED+      + +     
Sbjct: 193 ENQLRKSDTLTVVGELAAGIAHEIRNPMTALKGFIQLLQNSMGEDQYAMYFDVITSELKR 252

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEKIDLSRE 114
               +                 +   +++             + +   S      D+  E
Sbjct: 253 IESIITEFLVLAKPQAISYQRKNATVIMKETLDLLSAQASLENVQFITSIEEGLPDIYCE 312

Query: 115 RAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++      +   ++    K         +    + + S++  G      +K  ++ + 
Sbjct: 313 PNQLKQVFINILKNAIEVMPKGGTVSVALEKIEGEQVLISIRDEGTGI-PEDKLKKLGEP 371

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E+   +               L 
Sbjct: 372 FYTTKERGTGLGLMVSYKIVEEHNGTIEVSSKLGKGTTFHIKLP 415


>gi|91204021|emb|CAJ71674.1| hypothetical histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 906

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + K     L +  L  L  + S I H++ + +  I  +++LL +       +        
Sbjct: 528 LKKMETELLHAQKLQGLGVMASGIAHELNNILAVIDANIQLLIKESKGRIKLLQALSIIR 587

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG------------LGDIEQVIEDFIAVDK 98
           +     +       +F   +      +   +             L       +       
Sbjct: 588 EQCIDGAEVVRRMKEFTSTSVDPRKMIQVNMNSLVNNIIVFTKPLWKNIAEGKGLKYQLN 647

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
              +         S E  +++LN+F+ A  ++P GG +++S  + +     S+   G   
Sbjct: 648 TDCLKNVPNIKGNSPELREVVLNIFLNALDAMPEGGTISLSTWEKEGYVFLSIADTGTGM 707

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I D    +      +    V  +   +   +  +         +    
Sbjct: 708 -TDEVKAKIFDPFFTTKKKGMGLGMSVVYGIVKRHGGTIEVQSQPGKGSTFTLKFP 762


>gi|323490449|ref|ZP_08095656.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
 gi|323395853|gb|EGA88692.1| alkaline phosphatase synthesis sensor protein [Planococcus
           donghaensis MPA1U2]
          Length = 465

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 60/217 (27%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ +I    E L      +       ++++   S    + +  +     
Sbjct: 246 FVANVSHELRTPVTSIKGFSETLLDGAYKDTETLLSFLEIMHTESNRLEMLINDLLDLSK 305

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNL 122
                       +    +     E +         ++++      +   +    ++++NL
Sbjct: 306 VEQSGFRVNAQPTNMEAVIKRAREMIQPKIDEKSIQLKLEIQPVTVLGDANRLIQVMMNL 365

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTID 177
            + A        ++TI +    N  I  ++  G      E    F +             
Sbjct: 366 LINAVTYSSNYTEITIRLFRKDNRAIIQVEDQGIGIESSEIGRLFERFYRVDRARSRNSG 425

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  L   +   +  +         +  L 
Sbjct: 426 GTGLGLSIVKHLIEAHHGHVEVDSTVGVGTTFTIYLP 462


>gi|313890248|ref|ZP_07823882.1| PAS domain S-box protein [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121353|gb|EFR44458.1| PAS domain S-box protein [Streptococcus pseudoporcinus SPIN 20026]
          Length = 452

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115
           +    T     +         I +                 +   +  + I L  +    
Sbjct: 271 IDNQVTALAVEMTNFTAFMTSILNRFDLVRNQNTVAGKTYEIIRDYPIKSIWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+ + ++ ++++ I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKIRVKMKTTESQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIVKQHKGFIWAKSDYGKGSTFTIVLP 434


>gi|169830644|ref|YP_001716626.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169637488|gb|ACA58994.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 519

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 68/216 (31%), Gaps = 17/216 (7%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLSSMSAII 62
           L ++  + + + H+I +P+  I   ++LL E               V+  I   +     
Sbjct: 301 LASVGEMAAGVAHEIRNPLTVIRGYVQLLSEKKGEGMDALKPYYQTVLDEIDRLTQIIHD 360

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRER---AKI 118
            L   R        ++    L  +  +   + +  D  +++      ++++ +     ++
Sbjct: 361 FLNLARPQAVSKVPLNLNEVLTGVRHLLETEALRRDANLEIELDSSPVEINGDPAGLTQV 420

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           + NL   A  +  RGGKV +      +     +  NG      +   ++      +    
Sbjct: 421 VFNLVGNAFEAAGRGGKVRVRTYQRHHRAFLEVVDNGPGI-PDDLREKVFAPFFSTRAMG 479

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A ++   L               + 
Sbjct: 480 TGLGLAISRRVALDHGGTLTCRSEPGD-TRFILQIP 514


>gi|218235769|ref|YP_002367954.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218163726|gb|ACK63718.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 458

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +       G +   V++ +   I S+  NG      E   +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELEYSVIISISDNGIGMEKEE-MER 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 458


>gi|134300812|ref|YP_001114308.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134053512|gb|ABO51483.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 487

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           + + I    +   +     S + H+I +P+  +    E +      +    +  +  I  
Sbjct: 245 LQEKITQLEAQEQIRREFVSNVAHEIKTPLAIMQGFTETMLDGLVKDEKERETYLGNILD 304

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTG 106
                   +  +                  D  + +  +  ++ +        ++++   
Sbjct: 305 EINRLKRLVNEILDLKRMEEGHFDFDKEPCDLKVLIYRVLGKLNQLVEQKGVNLKLNLEK 364

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                   S    ++L+NL   A    P GGK+ I V    N+    ++  G      + 
Sbjct: 365 RLLPVTCNSDRMERVLINLIDNAVRHTPEGGKIFIYVTSKANQVHIRIRDTGVGISPEDL 424

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +   +       +    V  +   +  ++  E   +     + +L 
Sbjct: 425 PMIWERFYKADKSRSRTQGGTGLGLAIVKKIVEAHGGQIYVESKLNEGTSFNIVLP 480


>gi|167630148|ref|YP_001680647.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167592888|gb|ABZ84636.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 477

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 71/226 (31%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I   +E L +  ++        + +I   +      ++ 
Sbjct: 249 EQMRTEFVANVSHELRTPLTSIKGFVETLLDGALDDTKVARRFLSIINEETQRLQRLIED 308

Query: 67  MRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                 +     +  + ++ + I     +  +V V      + LS + 
Sbjct: 309 LLQLSRIESQLGRVVEGQSYLEPEIQRVRNLLEPIAADKRIALQVDVETNLPLLPLSPDN 368

Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L+NL   A    P GG+V++      +  I  ++  G      E   +I +     
Sbjct: 369 LKQVLVNLTENAIKYTPEGGQVSVRATRGCDSVILEVQDTGIGI-PEESLPRIFERFYRV 427

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +    V  +   +  R+  +         +    
Sbjct: 428 DKARSRELGGTGLGLAIVKHIIERSGGRVTVQSKVGVGSTFTVTFP 473


>gi|270307985|ref|YP_003330043.1| sensor histidine kinase [Dehalococcoides sp. VS]
 gi|270153877|gb|ACZ61715.1| sensor histidine kinase [Dehalococcoides sp. VS]
          Length = 852

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 69/226 (30%), Gaps = 17/226 (7%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62
              + +  L ++  + + + H++ +P+ ++    EL+ E  + +++M  +++ S  A   
Sbjct: 622 AQLMITDRLASVGEMAAGLAHELNNPLTSVLGFSELIQEKDLPEDLMHDVQIISQEAQRA 681

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-WTGEKIDLSRER 115
                  L F R        VD    +  +  +      V+    V+       ++  + 
Sbjct: 682 ADIIRNLLTFARRHEQARDWVDMNQVIKKVLAICNYGQKVNNIQMVTNLDPNLPEIKADY 741

Query: 116 AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++   L  +   +     +        I+     N    S++ +G              
Sbjct: 742 FQMQQVLLNIVINAEYFITQAHGEGTIVITSCRLDNSIRISIEDDGPGMSENVLKHIFDP 801

Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     +       +  ++  +L  E  +         L 
Sbjct: 802 FFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIELP 847


>gi|189426645|ref|YP_001953822.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
 gi|189422904|gb|ACD97302.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
          Length = 399

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 14/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
           + +       +  L AL  L + + H+I +P+ +I    +LL       +      ++++
Sbjct: 166 LHRAQSEIAQTEKLAALGYLAAGMAHEIRNPLNSISLFTQLLGQGVEEVEIGDYLGKILK 225

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGE 107
            +          +     +      +     + D   +    I   +             
Sbjct: 226 EVDRIDGIIRKLVDAANRSRLVVDDIRLDQVVKDALDIFSPQIDARQIQVSFTCAEPVPP 285

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  +I+ NL M A   LP+GG+++I +   +      +  NG      +    I
Sbjct: 286 IKADRTELEQIVTNLLMNAVEELPQGGELSIRIDCPEGLIAIRVADNGGGI-ASDHLESI 344

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +      I       +A      +  E   +        + +
Sbjct: 345 FKPFFSTKSRGTGIGLPVARRIARLYHGDVTVEQTSESGTTFLVTIPR 392


>gi|95929449|ref|ZP_01312192.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95134565|gb|EAT16221.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 397

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 74/227 (32%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
           + +     + +  L  +  L + + H+I +P+ +I    +LL        +     ++++
Sbjct: 160 LEQAHNEIVQAEKLATVGHLSAGMAHEIRNPLNSIGLFAQLLATGIDPGDELAEYPEKIL 219

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGE 107
           + I       +  L   +     T  V     + D+  +     +       + +    +
Sbjct: 220 KEIDRIDAILLKLLAASKQHKVDTQPVSLDEVIHDVADLFRPQFSQQGVDLDLYLQQVPK 279

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +    E  +I  NLF+ A  ++  GG +++ ++   +     +  NG+     E  +++
Sbjct: 280 LVGDQDEFVQIFTNLFVNALQAMADGGLLSVEMEQQGDRIYVEVSDNGSGI-AQENLSKV 338

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +           V+ +       +    I            
Sbjct: 339 FDPFFTTKSKGTGFGLSVVLRIVKNYHGSIRVSSILGKGTSFYLEFP 385


>gi|301061361|ref|ZP_07202141.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300444538|gb|EFK08523.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 327

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 1   MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIE 46
           M + +       + S  + ++  + + + H+I +P+  +    ELL E            
Sbjct: 75  MRRELEEAHLQLVQSDKIASVGRMAAGVAHEINNPLAGVLIYAELLQENLKDRPEQLADV 134

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105
            E+++            L+F R + G   S +    +     +  +     D  +     
Sbjct: 135 QEIIKQTLRCKKIVSELLEFSRQSIGKESSFELEKLIDSCLSLVTKQATFQDINIVKEID 194

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARF 160
                +  +  ++      +   +                +  K+  +  +   G     
Sbjct: 195 PHIPAMVGDMGQLQQVFINLFINASDAMEGFGEIKIKALYRPEKSSVVIGVSDQGPGI-P 253

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I D    +        +       + + +   +  E            L 
Sbjct: 254 EEMQDKIFDIFYTTKPVGKGTGLGLSISQNIINLHGGSIRFECPPTGGTTFIIELP 309


>gi|299145534|ref|ZP_07038602.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
 gi|298516025|gb|EFI39906.1| two-component system histidine kinase [Bacteroides sp. 3_1_23]
          Length = 500

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  +        +  +   + V        K +    
Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPEIEIKAILPDD 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +    +++ N    A             +   ++ +     ++  G       
Sbjct: 380 DIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLFVEDTGEGIPQEC 439

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +      +       +    +  +            +  L 
Sbjct: 440 QKEIFDRFYKVNTFKQGTGLGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLP 492


>gi|293371966|ref|ZP_06618367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292633084|gb|EFF51664.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 500

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  +        +  +   + V        K +    
Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPEIEIKAILPDD 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +    +++ N    A             +   ++ +     ++  G       
Sbjct: 380 DIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLFVEDTGEGIPQEC 439

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +      +       +    +  +            +  L 
Sbjct: 440 QKEIFDRFYKVNTFKQGTGLGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLP 492


>gi|297545596|ref|YP_003677898.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296843371|gb|ADH61887.1| multi-sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 568

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 73/230 (31%), Gaps = 26/230 (11%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAII 62
               L  +     + + H++ +PI  I + +E L     +     + +++I   +     
Sbjct: 338 EQHKLDTMRKEFVANVSHELRTPIATIKSYVETLLYSDVDAEYSKKFLKIIDSETDRMTR 397

Query: 63  RLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +K +              +     + I +  I ++  +    ++++ V        +  
Sbjct: 398 LVKDLLLLSKMDSEDNNLKFEQKNLNDIVVEAINRLSIEAQKKNQKLIVDLQETPRYVYI 457

Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           +     ++++NL   A    P  G + I  +  ++     ++ NG      +   +I + 
Sbjct: 458 DRDKMEQVIVNLVTNAIKYTPENGMIKIMTEYDESFASLIVEDNGIGIPKEDLP-RIFER 516

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    +    V  +   +K  +  E       ++   L 
Sbjct: 517 FYRVDKARSRELGGTGLGLSIVKQIVELHKGEVNIESEVGKGTIVRVKLP 566


>gi|226314264|ref|YP_002774160.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226097214|dbj|BAH45656.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 485

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59
           +  +I   L   +    L S I HD+ +PI  I   +E + E   + E   +        
Sbjct: 238 LYDSIHLQLQYEENRKQLISSISHDLKTPITGIKACVEAVQEGIADTEAKREKYMKMIAI 297

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
              ++  +         +D        E+V           ++        +S       
Sbjct: 298 KSEQMDRLIDELFLFSRLDLNKLPFHFEEVDMRAYMARFAEELRLDPRMHGVSIRYDEHN 357

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLAR-- 159
                         ++L+N+   +   L +  K+     +  + + + ++  NG      
Sbjct: 358 ESPIPVMADQEKLHRVLMNIVDNSLKYLNKDEKLIRLEVEKASGDVLVAISDNGTGIEKE 417

Query: 160 -FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P  F +    +           +    V  +   +  R+  E        +   L 
Sbjct: 418 AMPHIFDRFYRADPARNSAMGGSGLGLAIVKQIVEGHGGRVWVESESGRGTRICFTLP 475


>gi|189424803|ref|YP_001951980.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
 gi|189421062|gb|ACD95460.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter lovleyi SZ]
          Length = 376

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 71/240 (29%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
           A+    +   ++ + +L   + HD  + +  I     +L           E +Q+I  ++
Sbjct: 126 AEERLRHSQKLEAIGILAGGVAHDFNNILTVIRGYSTMLLMQTPPEDPNHESLQMIVDAA 185

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
             A    + +        +  S   L  +    E F+       ++        +     
Sbjct: 186 KRATSLTQSLLTFSRKQEATPSKAELCTLVSSFEKFLRRIIGDNITLNFVCDQNTSHASV 245

Query: 115 ----RAKILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGN 156
                 ++L+NL + A  ++P GG++TI+                        ++   G 
Sbjct: 246 DRSMIEQMLMNLAINARDAMPDGGQLTIATAHILLDSKSASALELSPGTYIHLTVSDTGC 305

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I D    +        +    V  +  ++   +  E         S  L 
Sbjct: 306 GI-PRELLPKIFDPFFTTKEVGKGSGLGLSMVYGIVKQHCGTISVESAPGSGTTFSIYLP 364


>gi|218898190|ref|YP_002446601.1| sporulation kinase [Bacillus cereus G9842]
 gi|218540722|gb|ACK93116.1| sporulation kinase [Bacillus cereus G9842]
          Length = 801

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVRIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGVGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|120611753|ref|YP_971431.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
 gi|120590217|gb|ABM33657.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax citrulli AAC00-1]
          Length = 595

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A +     S+    +   + I H++ +P+ +IH   EL+++   +    +   L   +A
Sbjct: 352 LAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAELMEQRLEQPSYREAAGLIRSAA 411

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSW 104
                 +             + +   +  + + +                 ++  +    
Sbjct: 412 EHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELVGTTVDLFAISAVQKGLTLEMHIAPGV 471

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +IL NL   A      GG    +     +   F +   G      +  
Sbjct: 472 PQVLRCDGLRLKQILNNLLSNALKFTREGGVRLETDTADGHSVRFRVTDTGPGI-PADLH 530

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +        V +      +       LA     RL            +  L 
Sbjct: 531 EVIFEKFSQGSADVSTQHGGTGLGLALSRGLAELMGGRLTVASEPGQGACFTLELP 586


>gi|309790612|ref|ZP_07685166.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308227340|gb|EFO81014.1| PAS/PAC sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 973

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56
           ++I        + +   S + H++ +P+ +I  +L+L+         G+      L+ +S
Sbjct: 482 RDITREREVERMKSEFVSNVSHELRTPLTSIQGTLQLVLGPKRSGSEGLPQRARDLLNVS 541

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSW 104
             +    ++ +             I L                ++          + +  
Sbjct: 542 LSNTERLIRLINDILDVAKIEQGRIELRRETLSVEDLCRAAVAEMHAFANHRGMSIDMDL 601

Query: 105 TGEKID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          +IL+NL   A         V +S +   +   FS++  G      
Sbjct: 602 QPGLPSVLADRDRSTQILINLLSNAIKFSVGSQSVLLSARTDGSMVYFSVRDWGRGIDL- 660

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I    V         +    +       L  E   R+  E         +  L 
Sbjct: 661 ENQERIFQKFVQIDSSATRDVGGTGLGLSISKALVEEQGGRIWLESELGRGSTFTFTLP 719


>gi|304379967|ref|ZP_07362696.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|304341547|gb|EFM07457.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
          Length = 608

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|221141404|ref|ZP_03565897.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|257424215|ref|ZP_05600644.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426892|ref|ZP_05603294.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429528|ref|ZP_05605915.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257432175|ref|ZP_05608538.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435136|ref|ZP_05611187.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M876]
 gi|282912933|ref|ZP_06320725.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M899]
 gi|282922561|ref|ZP_06330251.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C101]
 gi|293497986|ref|ZP_06665840.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511576|ref|ZP_06670270.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M809]
 gi|293550185|ref|ZP_06672857.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M1015]
 gi|257273233|gb|EEV05335.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276523|gb|EEV07974.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257280009|gb|EEV10596.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257283054|gb|EEV13186.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285732|gb|EEV15848.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M876]
 gi|269939545|emb|CBI47903.1| transcriptional regulatory protein WalK [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282314782|gb|EFB45168.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C101]
 gi|282323033|gb|EFB53352.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M899]
 gi|290919232|gb|EFD96308.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096917|gb|EFE27175.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465534|gb|EFF08066.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           M809]
 gi|329312743|gb|AEB87156.1| Sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           T0131]
          Length = 608

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|302749930|gb|ADL64107.1| multi-sensor signal transduction histidine kinase, WalK
           [Staphylococcus aureus subsp. aureus str. JKD6008]
          Length = 608

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|170025130|ref|YP_001721635.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Yersinia pseudotuberculosis YPIII]
 gi|169751664|gb|ACA69182.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Yersinia pseudotuberculosis YPIII]
          Length = 604

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47
           M +             L A+  L + + H+I +P+ +I    +  +        E  +  
Sbjct: 352 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
            +++ +   + +    L  +R +      V+    +     +I           + +   
Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162
                        + LLNL++ A  ++ R G + I++    +++   S+   G   R  +
Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 531

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +    V  +  E++ R+               + 
Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582


>gi|49482272|ref|YP_039496.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282907066|ref|ZP_06314914.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282910045|ref|ZP_06317853.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912293|ref|ZP_06320089.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|283959503|ref|ZP_06376944.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295429316|ref|ZP_06821938.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297589182|ref|ZP_06947823.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           MN8]
 gi|81652064|sp|Q6GKS6|WALK_STAAR RecName: Full=Sensor protein kinase walK
 gi|49240401|emb|CAG39047.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282323989|gb|EFB54305.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326111|gb|EFB56416.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329965|gb|EFB59486.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283789095|gb|EFC27922.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|295127075|gb|EFG56719.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297577693|gb|EFH96406.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312436840|gb|ADQ75911.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH60]
 gi|315195245|gb|EFU25633.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00]
          Length = 608

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSTKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|212638358|ref|YP_002314878.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212559838|gb|ACJ32893.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 587

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 24/217 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L +  + D       + +I   S      ++ +     
Sbjct: 362 FVANVSHELKTPITSIKGFAETLLDGAMHDAQTLEYFLTIILKESERLQHLIQDLLDLSK 421

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRERAKILL 120
             +  F    SV  L  +     V+ +  A DK++ + +T                +I +
Sbjct: 422 IEQQGFTLNISVVDLHEVLKEVIVMLEAKANDKQITLEYTSNAPVCYMYGDLHRLKQIFI 481

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A A  P GG+VT+ V+  + E    +   G      E   +I +           
Sbjct: 482 NLINNAIAYTPAGGRVTVYVEKDEKELHVHVSDTGIGIEQKEIP-RIFERFYRVDKARSR 540

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                 +    V  L   +   +  +         + 
Sbjct: 541 NSGGTGLGLAIVKHLVEAHHGTISVKSEVGIGTTFTV 577


>gi|86157066|ref|YP_463851.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773577|gb|ABC80414.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 373

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 74/233 (31%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +A+     L S  L A+  L S + H++ +P+GAI    EL        E    ++++  
Sbjct: 134 LAEARASWLRSEQLAAVGRLASGVAHEVGNPLGAISGYAELARGRIRAGEAEQAEDLVAR 193

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGE 107
           I + +      ++ +      +  V + I L                  + R ++     
Sbjct: 194 IAVEAGRIDAIVRDLLELARPSAPVVAPIALSGPVDAALRLARVQARLREVRAELDLPAS 253

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +    A++ LNLF+ A  ++   G + +  +  +      +  +G      +  
Sbjct: 254 LPPVLADEARLAQVFLNLFLNAGDAMGGRGTLRVEARAVEGAVEVEVSDDGPGIAPEDLP 313

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ D    +        +       L       L          V    L +
Sbjct: 314 -RVFDPFFTTKPPGAGTGLGLSVSHGLVEAMGGDLSAANGPGGGAVFRLRLRR 365


>gi|91772717|ref|YP_565409.1| external sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711732|gb|ABE51659.1| Signal transduction histidine kinase [Methanococcoides burtonii DSM
           6242]
          Length = 592

 Score =  121 bits (303), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSS 57
           +N    L  +D L     S + H++ +P+ A+  S E L E     E    ++ LI  + 
Sbjct: 345 QNANKKLKELDRLKNDFVSMVSHELKTPLTAMKTSSEFLRESECSREIKEEMLDLIIRNI 404

Query: 58  MSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWT 105
                 +  +                D  I       +                      
Sbjct: 405 DRQARMVDDLLDISRIESGKMKFTPEDVNIKEIIEISLHNVTKHAKDKSIKIMVNCPDDV 464

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  +I +NL   A    P  G+VT+ V+D ++    S+K NG      EK  
Sbjct: 465 PAISTDKDKLIRIFVNLLTNAIKFTPEEGEVTVIVEDHEDYLQTSIKDNGIGI-LEEKRD 523

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I D                 +    +  +      ++  E         +  L K
Sbjct: 524 KIFDKFYQVDSTATRKAGGTGLGLAIIKGIIDGQGGKIYLESETGKGSTFTFRLPK 579


>gi|301052048|ref|YP_003790259.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374217|gb|ADK03121.1| sensor histidine kinase; possible sporulation kinase [Bacillus
           cereus biovar anthracis str. CI]
          Length = 672

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661


>gi|265762626|ref|ZP_06091194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255234|gb|EEZ26580.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162192|emb|CBW21737.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis 638R]
          Length = 637

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 61/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICF------NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           M ++            +  + ++  + + H+I +P+ AI    E++     E E  + + 
Sbjct: 264 MRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLG 323

Query: 55  LSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   ++ + L+                 +    T     +  +  + ++          +
Sbjct: 324 IIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKMKKGVKLNVI 383

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + S             ++L N    A  +   G      V++ +      +   G     
Sbjct: 384 RPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKLYVTDTGCGISK 442

Query: 161 PEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +              +    +       +      R+  E            L 
Sbjct: 443 EKLPLIFTRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELGQGSTFILYLP 497


>gi|253563504|ref|ZP_04840961.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947280|gb|EES87562.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 635

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 61/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICF------NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           M ++            +  + ++  + + H+I +P+ AI    E++     E E  + + 
Sbjct: 262 MRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLG 321

Query: 55  LSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   ++ + L+                 +    T     +  +  + ++          +
Sbjct: 322 IIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKMKKGVKLNVI 381

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + S             ++L N    A  +   G      V++ +      +   G     
Sbjct: 382 RPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKLYVTDTGCGISK 440

Query: 161 PEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +              +    +       +      R+  E            L 
Sbjct: 441 EKLPLIFTRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELGQGSTFILYLP 495


>gi|228931825|ref|ZP_04094721.1| hypothetical protein bthur0009_3110 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827805|gb|EEM73543.1| hypothetical protein bthur0009_3110 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 674

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 448 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 507

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 508 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 567

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 568 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 626

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 627 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 663


>gi|229182716|ref|ZP_04309957.1| hypothetical protein bcere0004_2990 [Bacillus cereus BGSC 6E1]
 gi|228600801|gb|EEK58380.1| hypothetical protein bcere0004_2990 [Bacillus cereus BGSC 6E1]
          Length = 674

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 448 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 507

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 508 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 567

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 568 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 626

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 627 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 663


>gi|225862372|ref|YP_002747750.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225790293|gb|ACO30510.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 672

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661


>gi|196045264|ref|ZP_03112496.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196023848|gb|EDX62523.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 672

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661


>gi|60680665|ref|YP_210809.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
 gi|60492099|emb|CAH06862.1| putative two-component system sensor histidine kinase/response
           regulator fusion protein [Bacteroides fragilis NCTC
           9343]
          Length = 637

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 61/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICF------NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           M ++            +  + ++  + + H+I +P+ AI    E++     E E  + + 
Sbjct: 264 MRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLG 323

Query: 55  LSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   ++ + L+                 +    T     +  +  + ++          +
Sbjct: 324 IIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKMKKGVKLNVI 383

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + S             ++L N    A  +   G      V++ +      +   G     
Sbjct: 384 RPSEEIWISTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKLYVTDTGCGISK 442

Query: 161 PEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +              +    +       +      R+  E            L 
Sbjct: 443 EKLPLIFTRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELGQGSTFILYLP 497


>gi|325694847|gb|EGD36752.1| sensor histidine kinase VicK [Streptococcus sanguinis SK150]
 gi|327461011|gb|EGF07344.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1057]
          Length = 449

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GG +T+S++ +  + I S+   G      +    F +    +   
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  +++  +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|323351212|ref|ZP_08086868.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66]
 gi|322122436|gb|EFX94147.1| sensor histidine kinase VicK [Streptococcus sanguinis VMC66]
 gi|325690803|gb|EGD32804.1| sensor histidine kinase VicK [Streptococcus sanguinis SK115]
 gi|325696128|gb|EGD38019.1| sensor histidine kinase VicK [Streptococcus sanguinis SK160]
          Length = 448

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GG +T+S++ +  + I S+   G      +    F +    +   
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  +++  +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|307718270|ref|YP_003873802.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
 gi|306531995|gb|ADN01529.1| hypothetical protein STHERM_c05640 [Spirochaeta thermophila DSM 6192]
          Length = 1272

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 58/240 (24%), Gaps = 26/240 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +       +M   +   + + H+I +P+ AI    +LL       +    +     S 
Sbjct: 778  LKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASSFPSGKEASYLDAIRSSG 837

Query: 61   IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104
               L                       VD    + +I  +    +       +     + 
Sbjct: 838  KNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVEHKGLSFILDYAPAL 897

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLAR 159
                        ++L NL   A     +G            ++SK +   S++  G   R
Sbjct: 898  PPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGSLHTEESKVDLTISVEDTGIGIR 957

Query: 160  FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+       +              +       L       +  E         +  + 
Sbjct: 958  PEEREAIFQSFHQSSGQDTRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVNIP 1017


>gi|269928609|ref|YP_003320930.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269787966|gb|ACZ40108.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 668

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 63/233 (27%), Gaps = 24/233 (10%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------------GIEDEVMQLI 53
                ++       S   H++ +P+ +I   ++LLD                 +++   +
Sbjct: 413 QEAREAIKARDEFLSVAAHELRTPLTSIKGYIQLLDRRLAIEQPDIAALRASMEKLRPQL 472

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWT 105
                     L   R+  G+         L  I + + D +            R+ V  T
Sbjct: 473 ARFERIVRDLLDISRIDRGHLALQREPCDLAAIAREVFDAVEHSVDHDPAQPMRLSVPDT 532

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       ++L NL   A       G+V + V+      +  ++  G      E+  
Sbjct: 533 LPGIWDGARITQVLANLLSNALKFSTGRGEVVMEVRREGTHAVICVRDQGVGMTEEEQSR 592

Query: 166 QIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         I    +  +    +   +   +  E         +  L 
Sbjct: 593 VFEPFFRADSIVGHIPGTGLGLHITKRIVELHGGSITVESTPRIGSTFTVRLP 645


>gi|229131323|ref|ZP_04260224.1| hypothetical protein bcere0014_2940 [Bacillus cereus BDRD-ST196]
 gi|228652144|gb|EEL08080.1| hypothetical protein bcere0014_2940 [Bacillus cereus BDRD-ST196]
          Length = 672

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEERTYEKHNKYFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSIGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G      + ++ +N  + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKILTISTYKECQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|226310398|ref|YP_002770292.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093346|dbj|BAH41788.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 522

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +++   L+  +    L S I HD+ +PI  I   +E + +      E M        S
Sbjct: 280 LQESVGLRLADEESRKELISNISHDLRTPITNIKGYIEGIRDGVADTPEKMDKYVNIIYS 339

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-- 117
             + L  +         +D        E V       D   ++ +  EK  ++ +  +  
Sbjct: 340 KAVDLDLLVDELFLYSKLDLKQVPFTFEHVDIVQFLDDCIDELHYDLEKKGITIQWNQRT 399

Query: 118 ---------------ILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF- 160
                           +LN+   +   + +  KV      +  +     +K NG      
Sbjct: 400 AEGTLVIADLEKIKRTVLNIIGNSQKYMDKPEKVICVSVQADAHWATIEIKDNGIGIPQE 459

Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +                +       +   +  ++  E        +   L++
Sbjct: 460 AIPHLFERFYRVEQSRNSSTGGSGLGLSIARQIVEGHGGKIWVESKQGVGTSVFFTLKR 518


>gi|186894604|ref|YP_001871716.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Yersinia pseudotuberculosis PB1/+]
 gi|186697630|gb|ACC88259.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Yersinia pseudotuberculosis PB1/+]
          Length = 604

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47
           M +             L A+  L + + H+I +P+ +I    +  +        E  +  
Sbjct: 352 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
            +++ +   + +    L  +R +      V+    +     +I           + +   
Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162
                        + LLNL++ A  ++ R G + I++    +++   S+   G   R  +
Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 531

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +    V  +  E++ R+               + 
Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582


>gi|125718371|ref|YP_001035504.1| histidine kinase [Streptococcus sanguinis SK36]
 gi|125498288|gb|ABN44954.1| Histidine kinase, putative [Streptococcus sanguinis SK36]
 gi|324993853|gb|EGC25772.1| sensor histidine kinase VicK [Streptococcus sanguinis SK405]
 gi|324994826|gb|EGC26739.1| sensor histidine kinase VicK [Streptococcus sanguinis SK678]
 gi|325687267|gb|EGD29289.1| sensor histidine kinase VicK [Streptococcus sanguinis SK72]
 gi|327463117|gb|EGF09438.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1]
 gi|327470648|gb|EGF16104.1| sensor histidine kinase VicK [Streptococcus sanguinis SK330]
 gi|327474728|gb|EGF20133.1| sensor histidine kinase VicK [Streptococcus sanguinis SK408]
 gi|327490285|gb|EGF22073.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1058]
 gi|328946752|gb|EGG40890.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1087]
 gi|332358682|gb|EGJ36505.1| sensor histidine kinase VicK [Streptococcus sanguinis SK355]
 gi|332358953|gb|EGJ36774.1| sensor histidine kinase VicK [Streptococcus sanguinis SK49]
 gi|332362448|gb|EGJ40248.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1056]
 gi|332367142|gb|EGJ44878.1| sensor histidine kinase VicK [Streptococcus sanguinis SK1059]
          Length = 449

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPIWVEIDTDKLTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GG +T+S++ +  + I S+   G      +    F +    +   
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  +++  +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|325971109|ref|YP_004247300.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           sp. Buddy]
 gi|324026347|gb|ADY13106.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           sp. Buddy]
          Length = 397

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 72/230 (31%), Gaps = 20/230 (8%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           N      S +L ++  + + + H+I +P+ A+   L+LL +     E + L         
Sbjct: 148 NEARLRRSENLASMTTMAAGVAHEIKNPLAAMAIHLQLLRKAFGRKESLTLDDAQRYLDV 207

Query: 58  --MSAIIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                      +         +D+                 V+ +      R+++     
Sbjct: 208 LDEEISRLNSIVVDFLFAVRPMDTRLRLAQITRTLEEVTNFVMPELSEHHVRMKLDLPTS 267

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              L  +     + LLNL   A  ++  GG + + V+  +N+ +  +   G      +  
Sbjct: 268 LPKLEFDEHLIKQALLNLIKNAMNAMEGGGMIILQVRHDQNQVLLKVIDTGIGM-DEQTQ 326

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +      +    V  +  E+K  +  +         +    
Sbjct: 327 QKIFEPYFTTKATGTGLGLTVVYKIMKEHKGDITVQSKLGEGTTFTLYFP 376


>gi|295704406|ref|YP_003597481.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294802065|gb|ADF39131.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 695

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSM 58
           K       S  L A+  L + I H+I +P+ AI   ++LL E     E   M +I     
Sbjct: 470 KTEELLQKSEKLAAVGQLATAIAHEIRNPLTAIKGFMQLLTEKASKEELTYMNIISSEIE 529

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKID 110
                                 I L  + Q +   +     ++  +              
Sbjct: 530 RIERITNEFMSVAKPQAVTFQSIDLQLLIQQVILLLQPQATMKNIFIELNSYGEMPFVYC 589

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169
            S +  ++ +N+   A  ++P GG++ + ++   N      +   G      E+   + +
Sbjct: 590 ESNQMKQVFINILKNAIEAMPSGGEIKVELRKKDNNHIHIQIIDEGVGI-SKERIKHLGE 648

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  D   +       +  +++  L  +   +    +   L 
Sbjct: 649 PFYSIKEDGIGLGLMICFNIIQQHQGTLSIDSEVNKGTSVEICLP 693


>gi|265765195|ref|ZP_06093470.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263254579|gb|EEZ26013.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 411

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 59/229 (25%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                +S+  L +   + + H+I +P+ AI     LL     + E    + + + +    
Sbjct: 181 EKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLASADDDTEKKMYLDIVAENNDRL 240

Query: 64  LKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGE 107
           L+               +   +      D L  L  I  +        K +    +    
Sbjct: 241 LQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGILNIRLKDKPEIKLICKAGTDEWI 300

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +I+ NL   A      G          ++E  F +   G      E   +I
Sbjct: 301 IYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGE-QDKI 359

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D     +  +    +       +       +  E            L 
Sbjct: 360 FDRFTKLDHEVPGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLP 408


>gi|60680057|ref|YP_210201.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491491|emb|CAH06243.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 411

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 59/229 (25%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                +S+  L +   + + H+I +P+ AI     LL     + E    + + + +    
Sbjct: 181 EKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLASADDDTEKKMYLDIVAENNDRL 240

Query: 64  LKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGE 107
           L+               +   +      D L  L  I  +        K +    +    
Sbjct: 241 LQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCALHGILNIRLKDKPEIKLICKAGTDEWI 300

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +I+ NL   A      G          ++E  F +   G      E   +I
Sbjct: 301 IYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGE-QDKI 359

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D     +  +    +       +       +  E            L 
Sbjct: 360 FDRFTKLDHEVPGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLP 408


>gi|228985087|ref|ZP_04145254.1| hypothetical protein bthur0001_17880 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228774574|gb|EEM22973.1| hypothetical protein bthur0001_17880 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 293

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 64/234 (27%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 59  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEKKRKHYLTIIETE 115

Query: 57  SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +       + +                           +      +   +  + +     
Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERATYRLDQQLKQIVLNSEPLWDEKEIELDLDLEKV 175

Query: 108 KIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            I   +E   ++ +NL   +    P GG +TI + + +      ++ +G      +    
Sbjct: 176 HITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYETLVEVRIRDSGIGISEEQKQHI 235

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  + +    +  + K
Sbjct: 236 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHRGEIKVESEEGNGTEFTVCIPK 289


>gi|158521376|ref|YP_001529246.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510202|gb|ABW67169.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 496

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + ++    LSS  +     L S + H I +P+ +I+  L  L         + E + ++ 
Sbjct: 257 LRQSREMLLSSEKMALVGRLASVVAHSIRNPMTSINMRLFSLQRNLSLSSSQKEDLDVVA 316

Query: 55  LSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                    ++    F R        VD    +     ++   + +     V        
Sbjct: 317 DEMRRLDNIVRNFLEFSRPHKLKKQLVDISQVIDTSIDLLSYKLDLYGITVVREKQPGGI 376

Query: 111 LSRERA----KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     ++ +NL + A  ++      +  +  I         + ++  NG      
Sbjct: 377 SVEADPGLIKEVFVNLIVNACEAMEEGGRIKIAETIIVTGKMGKAVVINVIDNGPGI-PE 435

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I+     S  D   +  +       E+   L            +  L 
Sbjct: 436 EMQERILKPFETSKADGTGLGLFVAARTIEEHGGSLEFTSAVGQGTTFTITLP 488


>gi|312880454|ref|ZP_07740254.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310783745|gb|EFQ24143.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 817

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 68/241 (28%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           ++       M+ V  L   + HD  + +  I    EL    L+        ++ +     
Sbjct: 433 EDQLLQAQKMESVGRLAGGVAHDFNNLLTGILGYTELARGKLEGQEGAVRDLEEVERLGR 492

Query: 59  SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKIDL 111
            A    + +    R        VD    + +  ++++  +  D +++       G     
Sbjct: 493 RATDLTRQLLAFSRRQTLDPKVVDLNERIEESLRLLDRLLGEDVQIRFRPGEDLGLVRVD 552

Query: 112 SRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGN 156
             +  ++L+NL + A  ++P GG                V        +  +  +   G 
Sbjct: 553 PAQFEQVLVNLAVNARDAMPEGGILSLRTSHVELRAEAAVWYLEAAPGSYVLLEVSDTGT 612

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E    + +    +        +    V  +  ++   L               L 
Sbjct: 613 GM-DEETRAHLFEPFFTTKPVGKGTGLGLSMVYGIVKQHGGHLWVYSEPGKGSTFKIYLP 671

Query: 215 K 215
           +
Sbjct: 672 R 672


>gi|299146759|ref|ZP_07039827.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517250|gb|EFI41131.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 869

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +            +   + +  R+  S
Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G         +        ++  G       
Sbjct: 753 DKIYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +       +            +  L 
Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|294849847|ref|ZP_06790587.1| sensor protein kinase walK [Staphylococcus aureus A9754]
 gi|294823395|gb|EFG39824.1| sensor protein kinase walK [Staphylococcus aureus A9754]
          Length = 608

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVD-SLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLNL 122
                D     + D    I   I   +      T                 +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDITFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|229035319|ref|ZP_04189227.1| hypothetical protein bcere0028_53140 [Bacillus cereus AH1271]
 gi|228727999|gb|EEL79067.1| hypothetical protein bcere0028_53140 [Bacillus cereus AH1271]
          Length = 603

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 374 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 433

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++        +S 
Sbjct: 434 RIESITNEFMTVAKPQVVKIQLNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 493

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 494 EGNQLKQVFVNIVKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 552

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 553 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLP 597


>gi|220909068|ref|YP_002484379.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865679|gb|ACL46018.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 998

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 63/245 (25%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
            + +  +  ++DL            +   + + H++ +P+ A+    ++L E   E + +
Sbjct: 480 TQELEASNQALDLARDAAEAANKAKSTFLANMSHELRTPLNAVIGYSDMLMEDLEESDYL 539

Query: 51  QLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
             ++  + +                        Y    +    +  +  +++  +  +  
Sbjct: 540 PDLQKINSAGKHLLELINAVLDLSKIEAGKMELYLEEFNINELVQGVAALVKPLMDKNHN 599

Query: 100 VQ----VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                     G+    + +  + LLNL   A      G        D      F +   G
Sbjct: 600 RFALQIPDTLGKMTADATKVRQSLLNLLSNASKFTKAGTVTLNVWIDDTQRVFFQISDTG 659

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                PE+  ++                   +               +          V 
Sbjct: 660 IGM-SPEQLDKLFQEFTQADNSTTRNYGGTGLGLAISRRFCRMMGGDITVTSEPGVGSVF 718

Query: 210 SALLE 214
           +  L 
Sbjct: 719 TIELP 723


>gi|222053954|ref|YP_002536316.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221563243|gb|ACM19215.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 406

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            ++        DL  L  + + + H+I +P+  I    +++ +  +++            
Sbjct: 178 KQHQREMAHRKDLARLGEMGAMLAHEIRNPLAGIKGFAQVIGKKPMDERNSAFAGKIVAE 237

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEKI 109
            +     +     Y  S         +  +IE          +   V   ++        
Sbjct: 238 TLRLESLVFNLLSYARSGPISATDFVVCGLIEGAVALVRGEVEAKGVIISIKCPEDLRLS 297

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++LNL   A  ++  GG V I    S+      +  NG      E   +I +
Sbjct: 298 GDRDRLGQVMLNLLQNAVQAVSHGGMVDIVADRSQAGVTMVITDNGAGI-GKEVAERIFE 356

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  E+   +           ++    
Sbjct: 357 PFFTTKARGTGLGLAICKKIVEEHGGTIGVAGKPGRGAAITLTFP 401


>gi|229191305|ref|ZP_04318291.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876]
 gi|228592110|gb|EEK49943.1| hypothetical protein bcere0002_29690 [Bacillus cereus ATCC 10876]
          Length = 448

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M KNI       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKNIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448


>gi|160886838|ref|ZP_02067841.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
 gi|156107249|gb|EDO08994.1| hypothetical protein BACOVA_04852 [Bacteroides ovatus ATCC 8483]
          Length = 936

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 64/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    +  +    L  + + H+I +P+ AI    +LL E     E  + I++   +  
Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETEELSERQEYIKIVRENND 757

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GE 107
           +                      +G VD  +   DI + +      +  + +        
Sbjct: 758 LLLQLISDILDLSKIEAGTFEFTSGDVDVNLLCEDIVRSMGMKAKGEVELVLDNHLPVCH 817

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I       +++ N    A      G  + +  +    E  F ++  G      +     
Sbjct: 818 VISDRNRIHQVISNFVNNAMKFTSEGS-IHVGYKLKDGELEFYVEDTGIGIEKEQLPHIF 876

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +   R+  +            + 
Sbjct: 877 ERFVKLNSFVHGTGLGLSICQSIVEQLGGRIGVDSEKGKGSRFWFTIP 924


>gi|118476083|ref|YP_893234.1| GAF sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118415308|gb|ABK83727.1| GAF sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 677

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 451 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 510

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 511 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 570

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS      N  + +++  G     PE   ++    
Sbjct: 571 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGKNCVVLAVRDEGKGI-SPEVLEKLGTPF 629

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 630 YTTKENGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 666


>gi|298483471|ref|ZP_07001648.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270419|gb|EFI12003.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 869

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +            +   + +  R+  S
Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G         +        ++  G       
Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +       +            +  L 
Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|295087894|emb|CBK69417.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 869

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +            +   + +  R+  S
Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G         +        ++  G       
Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +       +            +  L 
Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|293372644|ref|ZP_06619026.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292632453|gb|EFF51049.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 862

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 626 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 685

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +            +   + +  R+  S
Sbjct: 686 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 745

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G         +        ++  G       
Sbjct: 746 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 805

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +       +            +  L 
Sbjct: 806 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 858


>gi|237723104|ref|ZP_04553585.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229447626|gb|EEO53417.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 789

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 553 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 612

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +            +   + +  R+  S
Sbjct: 613 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 672

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G         +        ++  G       
Sbjct: 673 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 732

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +       +            +  L 
Sbjct: 733 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 785


>gi|237714981|ref|ZP_04545462.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409069|ref|ZP_06085614.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444814|gb|EEO50605.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353280|gb|EEZ02375.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 869

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +            +   + +  R+  S
Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G         +        ++  G       
Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +       +            +  L 
Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|255306856|ref|ZP_05351027.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
          Length = 900

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +N    +    L + L   + HD+ +P+  I  ++                ELL  V  
Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + + +  +  + +S     +       ++  V+ +I     +       A+         
Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L+NL   +        K+ I+V +  +   F +  NG      E   
Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGTGI-SKELKK 841

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I D                 +       +   +K  ++ E   D        L K
Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVENNKDKGSTFKFSLPK 897


>gi|219847586|ref|YP_002462019.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219541845|gb|ACL23583.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 944

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------------DEVGIEDEV 49
           +++        L     S + H++ +P+ +I  SL+L+                     +
Sbjct: 450 RDVTREREIERLKDEFISIVSHELRTPLSSIQGSLQLVLGDDERGKTGLGDRLPPQVRTM 509

Query: 50  MQLIRLSSMSAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +Q+   ++   I  +  +                      I    +E++          +
Sbjct: 510 LQISLNNTQRLIRLVNDILDVNKIEQGKLQLQRKPVSPLAICRSAVEELTSFARQHGVTI 569

Query: 101 QVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            +        +  ++    ++++NL   A     +G +V +SV    +   FS++  G  
Sbjct: 570 ALDVPPNLPFVDADQDRIVQVVVNLLSNAIKFSSKGQRVLLSVVYETSVVRFSVRDWGPG 629

Query: 158 ARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               ++       + ++           +       L   +  ++  +       + +  
Sbjct: 630 IPHTDQQFLFQKFRQLNQANNRERSGTGLGLAISKELVELHGGKIWVQSEPGQGSIFNFT 689

Query: 213 LE 214
           L 
Sbjct: 690 LP 691


>gi|160886260|ref|ZP_02067263.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|260173623|ref|ZP_05760035.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921886|ref|ZP_07918126.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156108145|gb|EDO09890.1| hypothetical protein BACOVA_04267 [Bacteroides ovatus ATCC 8483]
 gi|313695761|gb|EFS32596.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 869

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 56/235 (23%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTSEEIAQFIGTINK 692

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +            +   + +  R+  S
Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFAEHNLPLLLKTVHDSQRLNMPPGVELVLRMPES 752

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
                   +    +++ NL   A      G         +        ++  G       
Sbjct: 753 DKKYLTTDNVRLQQVVNNLINNAAKFTSSGFITFGYEDDEVPGYTRIFVEDTGVGISEEG 812

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +       +            +  L 
Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIIERLNGTISVTSEVGKGTRFTVRLP 865


>gi|153005351|ref|YP_001379676.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028924|gb|ABS26692.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 626

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 64/232 (27%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQ 51
            ++      +  L ++  + + + H++ +P+  I     L                  + 
Sbjct: 392 ERSERQLRETEKLASIGEMAAGLAHELNTPLSNIRALASLARRDLDAGRVELQALKADLA 451

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSW 104
            +   +      +  +           +   +  +         +  +   V    +   
Sbjct: 452 DVADQTRRCTTIIDGLLRFARRQPPALAAHDVNRLVHGSLALVRLRAEKKGVTLAFEAGA 511

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +  + +  ++ +NL + A  +   GG+V +S   +       +  +G     PE  
Sbjct: 512 AQAAVVDAAQLEQVFVNLLLNAVDAARPGGRVEVSTATAGGRIAVRVSDDGAGI-APEHL 570

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +    +   +       +   +   L  +         +  L 
Sbjct: 571 PRIFDPFFTTKAVGEGTGLGLSVSYGIVRNHGGALSVDSAPGRGATFTVSLP 622


>gi|189425843|ref|YP_001953020.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter lovleyi SZ]
 gi|189422102|gb|ACD96500.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter lovleyi SZ]
          Length = 365

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 26/230 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMS 59
            +  L  L  L + + H++ +P+G I  + +LL+    +D  +        +        
Sbjct: 129 QADRLATLGTLAAGLAHEVKNPLGGIKGAAQLLERELDDDSDLLEYPRVMIKEAERIDKI 188

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKI 118
               L+           V+  + LGDI  +  +   + D  +   +      +  + A++
Sbjct: 189 IRQLLELASPRGPRYTPVNLHMVLGDIILLQREAAGSRDVSISTGFDPSIPPIMADEAQL 248

Query: 119 LLNLFMVAHASLPRGGKVTI--------------SVQDSKNENIFSLKINGNLARFPEKF 164
                 +   ++    +                   ++        +   G      E  
Sbjct: 249 TQVFLNLIRNAIEAMPEGGRLSVTSRVLAEYHLARNENRSRMVAVEVADTGPGI-SEENL 307

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++      +  +   +       +  E++  L  +        +S LL 
Sbjct: 308 AKVGTPFFTTKDNGTGLGLAICQKIVGEHRGMLKIDSKPGQGTKISVLLP 357


>gi|56459432|ref|YP_154713.1| osmolarity sensor protein [Idiomarina loihiensis L2TR]
 gi|56178442|gb|AAV81164.1| Signal transduction histidine kinase (contains HAMP domain)
           [Idiomarina loihiensis L2TR]
          Length = 436

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 17/204 (8%), Positives = 57/204 (27%), Gaps = 6/204 (2%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           LL + + HD+ +P+  I  + E++   ++   +  +  +  ++ +               
Sbjct: 227 LLMAGVSHDLRTPLTRIRLAAEMMPQGEDCLAQGIIEDIDDMNDIIDQFIDYVRLDQQES 286

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
           +        +      + D       + +              ++++NL   A       
Sbjct: 287 SSRESLNELIEQTVANVPDNWQKQFELDLGKLPRVWLRPLSMKRVIINLLENAERYGKHQ 346

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190
             V+      +    F +  +G      +    F     G+         +    +  + 
Sbjct: 347 VVVSSGHDKKQKRVWFRVTDDGPGIPEEQQATLFEPFTQGDKARGGVGSGLGLAIIKRIV 406

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   +  +   +  + +   L 
Sbjct: 407 DRHDGSIKLQNRPEGGLCVRIELP 430


>gi|323699081|ref|ZP_08110993.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323459013|gb|EGB14878.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 652

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
           +++  +L+    L A+  L + + H++ +P+ ++    +L    L      D+    +  
Sbjct: 414 RSLEEDLNEAKRLAAIGSLAAGVAHEVRNPLSSLRGFAQLFATKLKGQAPLDQYAAAMVQ 473

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            +      +  +             I +    D  + +  F   DK+++  +      + 
Sbjct: 474 EADRLNRVVTDLLYLAKPRRLDPMFIDMFKAGDSLRQLMRFDFEDKQIEPEFDFGPEPVW 533

Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEK 163
            +     ++LLNL   +  +L                          +  NG     PE 
Sbjct: 534 ADPDALRQVLLNLISNSLDALRGCADCDKPSHVRLVSMRGHKGTWIIVADNGPGM-DPEI 592

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V        +    V  +   +K R++ E        +     
Sbjct: 593 RDDVFKPFVTGKKTGTGLGLAIVQNIMRAHKGRVIIESEPGRGTEMKLFFP 643


>gi|295704203|ref|YP_003597278.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294801862|gb|ADF38928.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 459

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 69/235 (29%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           + KN       ++    +     + + H+I SP+ +I      L +       + + + +
Sbjct: 213 LTKNFNQMTKELNKIETMRQEFIASVSHEIQSPLTSIRGFSAALKDDIVSEDKKIQYLTI 272

Query: 53  IRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           I   S         +                           +  +   +   +  + + 
Sbjct: 273 IEKESTRLSQLSSNLLKLASLDSEHQTLMLQQYRLDEQIRHVVMALEPQWTKKNIEIDLD 332

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +  +I+  ++   ++ LNL   A    P  G V IS+     E    +K NG      +
Sbjct: 333 LSNVQIEADKDLLEQVWLNLVTNAIKYTPENGFVKISIHQKNEEIDVKIKDNGIGIAEED 392

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F      +   T+    +       +   ++  +  E   +   + S  L 
Sbjct: 393 QKYIFESFYKVDKSRTLKGSGLGLAITKKIVRLHEGAVRVESKKEQGSIFSVTLP 447


>gi|224826736|ref|ZP_03699836.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
 gi|224600956|gb|EEG07139.1| integral membrane sensor signal transduction histidine kinase
           [Lutiella nitroferrum 2002]
          Length = 911

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 67/233 (28%), Gaps = 23/233 (9%)

Query: 6   CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SSMS 59
              L  +D L     S + H++ +P+ +I    E+L +        +          +  
Sbjct: 674 NARLQELDRLKDDFMSSVTHELRTPLTSIRALSEILRDDPDIPPPERQRFHAIIVGETER 733

Query: 60  AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKID 110
               +             A  +T  +D    +    +         +  + +        
Sbjct: 734 LTRLVNQTLDLAKIESGNAEWHTTEIDLKQLVAQSAEATGQLFRDKEVTLSLELPQRVPP 793

Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    +++LNL   A   + RGG+VT+ + ++       +  NG      E    F
Sbjct: 794 LLADRDRLIQVMLNLLSNAAKFVGRGGRVTVRLAETPEGLRVDVADNGKGIAPEEQQLIF 853

Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   G   +        +       +      RL  E I       S +L +
Sbjct: 854 ERFRQGGGGMTDKPAGTGLGLPISRHIIEHFGGRLWVESIPGAGATFSFVLPR 906


>gi|322516693|ref|ZP_08069602.1| sensor histidine kinase VicK [Streptococcus vestibularis ATCC
           49124]
 gi|322124726|gb|EFX96164.1| sensor histidine kinase VicK [Streptococcus vestibularis ATCC
           49124]
          Length = 446

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LD+  + +E+        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDDGALHEEIAPNFIKVSLDETNRMMRMISDLLALSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLSRE---R 115
           +    T     +         I +                 +   ++   I +  +    
Sbjct: 270 IDNKSTQLDVEMTNFTAFMTYILNRFDQIKSQETNPGKFYEIIRDYSVNSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+S++ + ++ I S+   G      +    F +    + 
Sbjct: 330 TRVVDNILNNAIKYSPDGGKITVSMKTTDSQLIVSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 390 ARSRAQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|313617213|gb|EFR89705.1| alkaline phosphatase synthesis sensor protein PhoR [Listeria
           innocua FSL S4-378]
          Length = 254

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE++      +I+  S      +  
Sbjct: 26  ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 85

Query: 67  M-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +              +       V         E   E  I V    +            
Sbjct: 86  ILALSRIEQNPVAENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTIPPIIIETDRD 145

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 146 KLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 204

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 205 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 252


>gi|311069406|ref|YP_003974329.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869923|gb|ADP33398.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 578

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 71/238 (29%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           M +          +     + + H++ +PI +I    E L +      + +++ + +   
Sbjct: 343 MTETKKL----EQMRKDFVANVSHELKTPITSIKGFTETLLDGALDDREALLEFLSIILK 398

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTG 106
            +      ++     +        L                 +       D R +++   
Sbjct: 399 ESERLQSLVQDLLDLSKIEQQNFTLSVETFDAAKMLGEIETLLQHKASEKDIRFELNIPK 458

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           + + +  +     ++ LNL   A    P  G VTIS + ++ +    +   G      E 
Sbjct: 459 DPLYVQGDVYRLKQVFLNLANNALTYTPEHGTVTISAKLAEEDIQIEVADTGIGIEKEEI 518

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +                 +    V  L   ++ ++  +       +    L++
Sbjct: 519 P-RIFERFYRVDKDRSRNSGGTGLGLAIVKHLIEAHEGKIEVKSEQGQGTIFIVALKR 575


>gi|50913816|ref|YP_059788.1| hypothetical protein M6_Spy0470 [Streptococcus pyogenes MGAS10394]
 gi|94988066|ref|YP_596167.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS9429]
 gi|94991952|ref|YP_600051.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS2096]
 gi|94993852|ref|YP_601950.1| two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS10750]
 gi|139474239|ref|YP_001128955.1| sensor histidine kinase [Streptococcus pyogenes str. Manfredo]
 gi|50902890|gb|AAT86605.1| VicK [Streptococcus pyogenes MGAS10394]
 gi|94541574|gb|ABF31623.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS9429]
 gi|94545460|gb|ABF35507.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS2096]
 gi|94547360|gb|ABF37406.1| Two-component sensor histidine kinase VicK [Streptococcus pyogenes
           MGAS10750]
 gi|134272486|emb|CAM30749.1| sensor histidine kinase [Streptococcus pyogenes str. Manfredo]
          Length = 450

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +    T                     L   +      +    R     +      + + 
Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|19745651|ref|NP_606787.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS8232]
 gi|19747782|gb|AAL97286.1| two-component sensor histidine kinase [Streptococcus pyogenes
           MGAS8232]
          Length = 450

 Score =  121 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 68/224 (30%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +    T                     L   +      +    R     +      + + 
Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|332982124|ref|YP_004463565.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
 gi|332699802|gb|AEE96743.1| PAS/PAC sensor signal transduction histidine kinase [Mahella
           australiensis 50-1 BON]
          Length = 430

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 26/235 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
                L  +   A L + + H+I +P+ +I    E L     D+       + +I   + 
Sbjct: 187 TELKRLDQVK--AELVANMSHEIKTPLTSIKGFAETLLDGAMDDRETCRRFLTIIDSEAD 244

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106
                +           +        ++    + +I  +++               +   
Sbjct: 245 RMSRLINDSLTLSRLESQDRNISIEPINLHELIVNILDMVDSSAKTKNIDVTFYDQATDM 304

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         +++LNL   A    P GGKVTI+++D   +   S+K  G      E   +
Sbjct: 305 KIDGNEDRMHQLMLNLIDNAIKYTPSGGKVTITIKDEGEDAFISVKDTGIGI-AKEHMPR 363

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +            +    +    V  +       +               L K
Sbjct: 364 LFERFYRVDKGRSRNMGGTGLGLAIVKHVVMSMNGTIDVNSELGRGTEFIVRLPK 418


>gi|309792280|ref|ZP_07686752.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225821|gb|EFO79577.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 810

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 60/239 (25%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58
            +     + S  L A+  L + + H++ +P+ ++    +L L    +  E  Q I     
Sbjct: 420 RRLEQQLIQSEKLSAIGQLVAGVAHELNNPLTSVSGYAQLTLRNKDLSPETRQDIEQIHA 479

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKID 110
            +          L F R       +V     L     +        +  VQ+        
Sbjct: 480 QSERAAKIVQNLLIFAREHTPERSTVVINEVLRSALALQAYQLRVDNIAVQLDLDPNLST 539

Query: 111 LSRERAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNL 157
              +  ++          A  ++           R   V       +      +   G  
Sbjct: 540 TIADPHQLQQVFLNLITNARHAMVERGGAGTLTLRTRVVPAQELGQEPMIRIEVADTGIG 599

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +I +    +        +       +  E+  ++  E        +   L 
Sbjct: 600 IPERNLR-KIFNPFFTTKPIGQGTGLGLSICFGIIQEHDGQIWAESQQGAGTRVYVTLP 657


>gi|329765880|ref|ZP_08257446.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137723|gb|EGG41993.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 487

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 72/222 (32%), Gaps = 11/222 (4%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +    ++ +  L     + +++ HD+ +P+  I N  EL +    E++    ++    
Sbjct: 270 LERIRKESVKNEKLALIGDMTAKLSHDLRNPLTIIKNGFELFELGLPEEKRKDNMKRIQN 329

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +       +     +            L  I  +  + I + + +++      I ++ +R
Sbjct: 330 AVDRISYEIEAIMNFVRDNPLHKEQISLRRIIDITIENIEIPEGIKIEKEIPDITINVDR 389

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFTQIVDGNVE 173
            +IL     +   ++       I++          ++   +G      +K  +I      
Sbjct: 390 EQILRVFSNIIINAIDAMKNGKITIIAKSKTKTIEIEFTDSGPGI-PKDKIDKIFQPLFT 448

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +      +       L  ++   +  +         + +L K
Sbjct: 449 TKSKGTGLGLSICKTLIEKHGGGISVKNNP---TRFTVILPK 487


>gi|297568632|ref|YP_003689976.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924547|gb|ADH85357.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 793

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 28/232 (12%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMS 59
            S  + A+  L + + HD  + + ++ +   L+     +         E++   R ++  
Sbjct: 409 QSAKMEAVGTLAAGVAHDFNNILTSLISFATLVKRRHRDDEVSQDYLQEILDSARRAAEL 468

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L + R         D    +   ++++   I  +  +++      + +  +  +I 
Sbjct: 469 TRSLLAYSRKQQIELKPEDLGKTVEKNQKMLRRIIRENIELKLELIDRPLPVMADHVQIE 528

Query: 120 LNLFM---VAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARFPEKF 164
             L      A  ++P GG++TI                     + ++   G     PE  
Sbjct: 529 QVLMNLASNAQDAMPAGGRLTIGAGWQEKAPSELELVTAGPWAVLTMADTGFGI-DPEIR 587

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +    V  +  ++   +  E         +  L 
Sbjct: 588 KRIFDPFFTTKEVGRGTGLGLSMVQGVVQQHGGAIRLESEPGQGSTFTIYLP 639


>gi|206889876|ref|YP_002248033.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741814|gb|ACI20871.1| two component system histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 618

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 74/250 (29%), Gaps = 37/250 (14%)

Query: 1   MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDE---VGIE 46
           + + +    + +++            +   + + H++ +P+ +I    E+L +     + 
Sbjct: 363 LEQKVKERTAELEIAKIHAEAANRAKSEFLANMSHELRTPLNSIIGFTEVLQDQLFGTLN 422

Query: 47  DEVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVI 90
           ++ ++ ++    SA                      + L+      V ++  +   E+  
Sbjct: 423 EKQLEYLKDIHDSAKHLLNLINDILDLSKIEEGKTELELSEFRVSDVVNVSLIMFKEKAS 482

Query: 91  EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
           +  I +D  +            R+  ++L NL   A    P GG V I+ +  ++     
Sbjct: 483 KHGIKLDAEISKEADITVTADERKIKQVLFNLVSNAVKFTPDGGSVKITAERKEDMIEIV 542

Query: 151 LKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++  G      E   ++                   +       L   +  ++  E    
Sbjct: 543 VEDTGIGI-KKEDRDKLFQPFSQLETTYTKKYQGTGLGLALSKSLVELHGGKIWCESEYG 601

Query: 205 HNVVLSALLE 214
                     
Sbjct: 602 KGSRFGFSFP 611


>gi|78223984|ref|YP_385731.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78195239|gb|ABB33006.1| amino acid-binding domain sensor histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 576

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 65/237 (27%), Gaps = 28/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           AK        +    L  + + H++ +P+ +I     +L +         + + + ++R 
Sbjct: 340 AKERAEAADQLKSAFL--ATMSHELRTPLNSIIGFTGILLQGLGGPINDEQAKQLTMVRH 397

Query: 56  SSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           S+   +  +  +                 +            +  +++            
Sbjct: 398 SANHLLSLISDVLDISKIEAGQLKISPEPFQLRESVQKVTQSVAGLVDKKGLRLILEIAD 457

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             G  +   R   ++LLNL   A     +G       ++S+   + S+  +G   +  + 
Sbjct: 458 DVGSIVSDQRRVEQVLLNLLSNAVKFTEQGTISVRCSRESE-WYVTSVADSGIGIKEEDL 516

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++               +   +       L       +  E           LL 
Sbjct: 517 -ERLFKPFHQVDTGLSRKYEGTGLGLSICKRLVELMGGSITVESRQGEGSTFCFLLP 572


>gi|23099619|ref|NP_693085.1| two-component sensor histidine kinase [Oceanobacillus iheyensis
           HTE831]
 gi|22777849|dbj|BAC14120.1| two-component sensor histidine kinase involved in phosphate
           regulation [Oceanobacillus iheyensis HTE831]
          Length = 453

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 66/224 (29%), Gaps = 20/224 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRL------ 64
             +     + + H++ +PI +I    E LLD    +    + + +    +          
Sbjct: 230 EKMRKDFVANVSHELRTPITSIRGFAETLLDNNITDPATKEFMEIIYKESHRLQLLIEDL 289

Query: 65  --------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                   +  RL          +  +        +   +   ++V              
Sbjct: 290 LALSRLEREDFRLLIDNYDVRQMVEEILPQLHQKAENKNLTFDLEVPDQLTMRADKDRMK 349

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGN-- 171
           ++L+NL   +    P GG + +++ +  +   F +K +G           F +    +  
Sbjct: 350 QVLINLIDNSIHYTPSGGDICLAISEETDVIHFQVKDSGIGMDEKSQTRVFERFYRVDKA 409

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +    V  +   +K ++  E   +    +   + K
Sbjct: 410 RSRNTGGTGLGLAIVKHIVEVHKGKIDVESTLNQGTTIHIYIPK 453


>gi|75763246|ref|ZP_00743002.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74489267|gb|EAO52727.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 801

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +       +  +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIQPNDISLLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVRIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|116623299|ref|YP_825455.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226461|gb|ABJ85170.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 531

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 69/237 (29%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           + K     LS+  + ++  L + + H+I +P+  I     L+                E 
Sbjct: 285 LEKTHKVLLSTEKMASIGKLAATVAHEINNPLFGILTYARLVLRNLMKVEVEGRDEMAEQ 344

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101
           +Q I   S      +K +        S      L  I       +     +Q        
Sbjct: 345 LQTIERESKRCGDLVKNLLSFSRQAPSNREPQDLNTIVHRATLLVKHKLDMQSIELRETL 404

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLAR 159
                     + +  +++L L + A  ++P+    +V+     +  + +  ++  G+   
Sbjct: 405 AEGLPPVECDANQIQQVILVLMVNASEAMPKGGTLEVSTEFDKTAEQGVVRVRDTGSGI- 463

Query: 160 FPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +I D    +  D     +       +  ++   +               L 
Sbjct: 464 PADVLPRIFDPFFTTKEDVNRTGLGLAVAAGIVEQHTGEITVHSTPGEGTQFRVALP 520


>gi|47569586|ref|ZP_00240264.1| sporulation kinase [Bacillus cereus G9241]
 gi|47553769|gb|EAL12142.1| sporulation kinase [Bacillus cereus G9241]
          Length = 672

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  +   L+LL E    ++           +  
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTVRGFLQLLKEENNYEKHNNYFNLMVEELDR 505

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS      N  + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGKNCVVLAVRDEGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|302039214|ref|YP_003799536.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300607278|emb|CBK43611.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 892

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVALL---CSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
            K +   L   + VA L    S + H+I +P+  I    E L E        + +Q I  
Sbjct: 661 RKRLQAQLRRTERVAELGTVASGMAHEIGTPMNVILGRAEYLMERTKEEPVRKGLQTIVS 720

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGE 107
                   +  +             + L    +   +                       
Sbjct: 721 QVERITRVMNQLLAFARRRPVEHRALDLRQTIEDNLEIFQERLSHSNISVETSFADACPL 780

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               + + +++L+NL M A  ++P GG + +++   +     ++   G+     +   ++
Sbjct: 781 VHADADQMSQVLINLVMNAIHAMPGGGLLKLALTPDRGMVRLTVADTGHGM-PRDVIAKV 839

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +        +    V  +  E+   +  E   +     +  L 
Sbjct: 840 FDPFFTTKEFGKGTGLGLTVVKGIIEEHSGTIEVESEPERGTTFTICLP 888


>gi|153807442|ref|ZP_01960110.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
 gi|149129804|gb|EDM21016.1| hypothetical protein BACCAC_01722 [Bacteroides caccae ATCC 43185]
          Length = 930

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 69/229 (30%), Gaps = 18/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +A++       +    L  + + H+I +P+ AI    +LL   + +    E ++++R ++
Sbjct: 699 LARDKAEMADRLKSAFL--ANMSHEIRTPLNAIIGFSDLLVEAENLEERKEYVKIVRNNN 756

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +  +                  G VD  +   DI   ++  +  +  +       + 
Sbjct: 757 ELLLQLITDILDLSKIEAGTFEFSCGDVDVNLLCEDIVCCMQMKVHEEVELLFDSHLPQC 816

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +R    +++LN    A     +G            E    ++  G      ++   
Sbjct: 817 HIISDRNRLHQVILNFVNNAIKFTSQGSIRVGYQVK-GEELEVYVQDTGVGIDEEQQLHI 875

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S +    +       +  +   R+  +            L 
Sbjct: 876 FERFVKLNSFVPGTGLGLSICQSIIEQLGGRIGVDSELGKGSRFWFRLP 924


>gi|16801705|ref|NP_471973.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
 gi|16415180|emb|CAC97870.1| two-component sensor histidine kinase [Listeria innocua Clip11262]
          Length = 591

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE++      +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +                      V         E   E  I V    +            
Sbjct: 423 ILALSRIEQNPVAENTEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTIPPIIIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|28898277|ref|NP_797882.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361872|ref|ZP_05774881.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260878615|ref|ZP_05890970.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260896147|ref|ZP_05904643.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|28806494|dbj|BAC59766.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086190|gb|EFO35885.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308091183|gb|EFO40878.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308111377|gb|EFO48917.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 679

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  ++EL+     ++     E +  I
Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGEDASRVQEEIDAI 492

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 552

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL M A  ++   GK+ +  +D   E         +  +G    
Sbjct: 553 HTPVEINRHHLLQILVNLQMNAIHAMNGKGKLIVMSEDWIEEGEIKGAAIHVIDDGCGI- 611

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE   +I      +  D   +       +  +    L  E         S  L K
Sbjct: 612 KPENLNRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 667


>gi|254412228|ref|ZP_05026003.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181194|gb|EDX76183.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 423

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 72/238 (30%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSR----ICHDIISPIGAIHNSLELLDE------VGIEDEVMQ 51
           A+++   L +    + L SR    + H+  +P+  I+ S +LL            ++++Q
Sbjct: 184 AESLRRELEAEKEFSELKSRFIQTVSHEFRTPLNMIYVSAQLLARSHDGLTEEKCNQLLQ 243

Query: 52  LIRLSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
               +       L  + +               +D       + +  +      K +Q +
Sbjct: 244 RTDKAVRRITKILDDVLVFSKASADKLELNPTLLDLEQFCQTLVEDYQVIAGSSKTLQFN 303

Query: 104 WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             G K  +  +     +IL NL   A         +T+++    +   F ++  G     
Sbjct: 304 APGTKHSVCLDEKLLYQILGNLLSNAINYSQPNSTITLTLTYPDHTVCFQIQDQGIGIPR 363

Query: 161 PEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ D    +     +    +    V      +   +            +  L 
Sbjct: 364 EDIP-RLFDPFHRARNVSNLPGTGLGLSIVKKAIEIHGGTINVHSEVGIGTTFTVTLP 420


>gi|253700149|ref|YP_003021338.1| histidine kinase [Geobacter sp. M21]
 gi|251774999|gb|ACT17580.1| histidine kinase [Geobacter sp. M21]
          Length = 592

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 19/226 (8%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSA 60
             + S  + A   L + I H++ +P+  I    +L          ++    +I   +   
Sbjct: 361 QLVHSEKMAAFGALGAGIAHEVKNPLAGILGITQLSLRGAGAGHPLEKNLLIIEKETKRC 420

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDLS 112
              ++ +             + L  +       +     +                   +
Sbjct: 421 KTIIEHLLKFARQEQVEFGEVDLQQVVADALAIVDHQLGINSIKVEQELEPGMPTCRGNA 480

Query: 113 RERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +  ++L+NL + A  ++          + +  +      +  NG      E   +I D 
Sbjct: 481 NQLQQVLMNLMLNAQQAMSGKTGTVKLSARRLEQGGVELRVADNGPGI-SKEIQGKIFDP 539

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +        +       +  ++   +  E  +         L 
Sbjct: 540 FFTTKPAGQGTGLGLSVTYGIVKDHGGEIHLESEEGVGTTFIITLP 585


>gi|153005958|ref|YP_001380283.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029531|gb|ABS27299.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 522

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 60/231 (25%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           A+       +  L + L S + HD+ +P+  I  +   L      E     ++   I   
Sbjct: 276 ARQAELRARTEALRSGLLSSVSHDLRTPLAVITGAASTLRADLALEPETRRDLSDAICEE 335

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
           +      +  +                      +          +++       L  +  
Sbjct: 336 AERLERLVANLLDMTRLDAGAVEPRREWVPLVEVLGGALTRLDRRLAGRRVVTALPDDLP 395

Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L+NL   A    P G  V I  +   +     +   G      ++  +
Sbjct: 396 LVSLDPVLVEQLLVNLLENAAKYTPAGSTVEIGARSEGDTLCVEVGDRGPGIPPGDE-ER 454

Query: 167 IVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +         +    +       +A  +  RL+         V    L 
Sbjct: 455 IFERFHRGAHAGVRGVGLGLPIARAIAQAHGGRLVAANRPGGGAVFRLTLP 505


>gi|114763315|ref|ZP_01442739.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Pelagibaca
           bermudensis HTCC2601]
 gi|114544113|gb|EAU47123.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Roseovarius sp.
           HTCC2601]
          Length = 647

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 72/234 (30%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     + S  L A+  + + + H+I +P+  I  +++++        G  +  + LI
Sbjct: 412 LEQTFRQLVMSEKLAAIGEITAGVAHEINNPMAVIQGNVDVIRMELGAEAGRVETELTLI 471

Query: 54  RLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
               M     +  +              +V     + D   +++  ++       +   E
Sbjct: 472 DRQVMRMEAIVGKLLKFAQPSEYSDCAETVALAPVVEDSLMLVDHALSKGAIEVQTDLPE 531

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160
              ++ +     ++ +NL + A  ++   G +       +++       +++ +G     
Sbjct: 532 LPLVAIDAGEMQQVSINLILNAAQAMSGRGHLWLSLAEEMREGVAGVALTVRDSGPGIAE 591

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +           +   +       +       +      +   V +  L 
Sbjct: 592 EALGSLFDPFFTTRRGEGTGLGLSISQSIVQGAGGIITAGNAPEGGAVFTVWLP 645


>gi|116750690|ref|YP_847377.1| sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116699754|gb|ABK18942.1| Cache sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 619

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 74/236 (31%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + +       S  L +L  L + + H+I +P+ ++   L+ ++    I  E  +  +++ 
Sbjct: 374 LKRTQAAVARSQQLASLGQLAAGVAHEIRTPLTSLKMFLQSIESELEISFEYEEDFQIAM 433

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEKI 109
              +     +     +      +    D++++I+             +  V+        
Sbjct: 434 TQILRMEATINRFLDFAKPQAPVFTEVDVKELIQDALLVAGPRAKQQETVVRTRIADSLP 493

Query: 110 DLSRERAKI---LLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLA 158
            +  +R ++   LLNL +    +L            + +++ +  +      +   G   
Sbjct: 494 RIRGDRKQLGEALLNLMVNGLEALNAGGELSLLAELEPSVTDKGLREYIRIDVADTGPGI 553

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E    + D    +      +    V      +  R+  E         S L+ 
Sbjct: 554 -REEAMPSLFDPFFTTKATGTGLGLSIVDGTVKRHGGRIRVENGVGGGATFSLLIP 608


>gi|283851137|ref|ZP_06368421.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio sp. FW1012B]
 gi|283573533|gb|EFC21509.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio sp. FW1012B]
          Length = 620

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 17/232 (7%), Positives = 56/232 (24%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54
           + +             L A+  L + + H+I +P+ +I         +     E  Q   
Sbjct: 371 LREVRRLEAEVRRREKLAAVGNLAAGVAHEIRNPLSSIRGYAAYFGAKFEPGSEDRQAAE 430

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTG 106
           +         + +     +    D       +  +                  + ++   
Sbjct: 431 VMVREVDRLNRVISELIEFARPSDLRRRPVSLADLAAHAARLTRPDAAARGVDIDLAEAA 490

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE 162
              ++  +  ++   L  +   ++       +               S+   G+     E
Sbjct: 491 GGPEIPADPDRLAQALLNLCLNAIQSMEAGGVMRLATGTAPDGRAFISVADTGSGIDPEE 550

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +I D    +      +       +   +   +          + +  L 
Sbjct: 551 R-DRIFDPYYTTKPHGTGLGLPIAHKIVVAHGGEIRLARRPGGGTLATVYLP 601


>gi|229028176|ref|ZP_04184317.1| hypothetical protein bcere0028_3070 [Bacillus cereus AH1271]
 gi|228733124|gb|EEL83965.1| hypothetical protein bcere0028_3070 [Bacillus cereus AH1271]
          Length = 672

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEPTYEKHNKHFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIRDIIPLIKIDTHNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++     +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMDTEKVLTISTYKEDQDCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +K ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHKAKIEIQ-TGSEGTTF 661


>gi|220922972|ref|YP_002498274.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947579|gb|ACL57971.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 652

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 20/231 (8%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-- 57
           +     +     L A+  L + + H++ +P+  +     LL +     +V +        
Sbjct: 276 EAQRMRIHQMEKLSAMGSLLAGVAHELNNPLAILIAQATLLRDKAPTLDVQRRAERIHAA 335

Query: 58  -MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKIDLSR 113
              +   +K               + L DI QV   +  +      V +      +    
Sbjct: 336 AERSGRIVKSFVAMARQEPPRREPVDLNDIVQVAVEMTAYGRRSAGVTLELALAPMLPPI 395

Query: 114 ERA-----KILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSLKINGNLARFPEKFT 165
                   +++ NL + A   L                    +  +  +G     P+   
Sbjct: 396 SGDRDLLGQVVANLLINAAQVLFDHRGDRCITLRTSLDGEAVVLEVADSGPGV-PPDIRE 454

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I D    +        I       +   +  R+  E       +   +L 
Sbjct: 455 HIFDPYFTTKPVGAGTGIGLSISHRVIESHGGRISVEDRPGGGALFRVVLP 505


>gi|120596909|ref|YP_961483.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella sp. W3-18-1]
 gi|120557002|gb|ABM22929.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella sp. W3-18-1]
 gi|319424494|gb|ADV52568.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella putrefaciens 200]
          Length = 707

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLS 56
           + +     +++  L AL  L + I H+I +P   I  ++EL+     ++  +  + I L 
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELMRYELGDNADLVKEEIDLV 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTG 106
               +     +R    Y+   +    L            +  V       +  +    + 
Sbjct: 512 IQQVMRISTIIRSLLQYSRPGEFNAPLEMQSITPIIEETMVLVRHSIKKQEVILITELSA 571

Query: 107 EKIDLSRERA--KILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
             +         ++L+NL + A  ++               QD        ++  G+   
Sbjct: 572 TCLVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWLQQDVPIGVKIEVEDEGSGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE   +I D    +  D   +       +       +          V +  L
Sbjct: 631 APELLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTLGKGTVFTIGL 684


>gi|118579341|ref|YP_900591.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502051|gb|ABK98533.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 75/231 (32%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + ++    L +  L +L  L   I HD  + + AI  ++ L    L++     + ++   
Sbjct: 412 LQQSRQEILKTQKLESLGVLAGGIAHDFNNILTAILGNISLARLQLNDTAKVTKRLEEAE 471

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            ++  A    + +         +   I +  + +   DF      V+  +          
Sbjct: 472 TATTRAKDLTRQLITFARGGEPLKKNIDVSSLLREATDFALHGSNVKCRFDLPDDIWMVE 531

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTI------SVQDSKNENIFSLKINGNLARFPEK 163
               + ++++ NL   A  ++P GG ++I      S +  +     S+   G        
Sbjct: 532 ADEAQLSQVIHNLVFNAIQAMPGGGTISIGASNVVSQEGGRKFVKISVTDTGTGIPAHH- 590

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             QI D    +  +S  +       +  ++  ++               L 
Sbjct: 591 MQQIFDPYFSTKENSIGLGLATCHSILKKHGGKIRAASTLGRGSTFLVSLP 641


>gi|320159585|ref|YP_004172809.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319993438|dbj|BAJ62209.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 584

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ ++   +E L     ++       ++ + +   +    ++ +     
Sbjct: 365 FVSNVSHELRTPLASLKALVETLQEGALEDPPAAQRFLRQMEIEIDNLTQMVRELLELSR 424

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILL 120
                            I     E++          +QV       ++  +     ++L+
Sbjct: 425 IESGLVPLQRRPVSPCEILRRGAERMRLQAERAGLTLQVDCPESLPEVFADAERVEQVLV 484

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177
           NL   A    P GG++T+ V+       F ++  G      +    F +    +   + +
Sbjct: 485 NLTHNAVKFTPPGGEITLGVKQEGQAICFWVRDTGVGIPPEDLERIFERFYKTDRSRSGE 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +  R+  E            L 
Sbjct: 545 GTGLGLSIARHIVETHGGRIWAESQVQQGSTFFFTLP 581


>gi|302390748|ref|YP_003826569.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302201376|gb|ADL08946.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 590

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 72/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55
           + ++I       ++     + + H++ +P+  I +  E L +  ++      + + +I  
Sbjct: 351 LLQDITKQQRLEEMRKEFVANVSHELRTPLTTIKSYAETLLDGALDDSSVARQFLSVIND 410

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTG 106
            +      +  +        R        +     L  +  +++         ++     
Sbjct: 411 EADRMTRLVNDLLELSRLDNRETNWDKKPIRIDGVLTAVISKMMVSVRKKGLELECDLPE 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
           +   +  +     ++  N+   A    P GG++ +  ++  ++   S++  G      + 
Sbjct: 471 DLPKVFADSDKMEQVFQNILSNAIKYTPEGGRIFVKAENLGSQVQVSIRDTGIGIPKEDL 530

Query: 163 --KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   +       +       +   ++  +  E        +   L 
Sbjct: 531 PRIFERFYRVDKTRSRQLGGTGLGLSIAREIVLAHEGEIKVESELGQGTEVIIKLP 586


>gi|288556615|ref|YP_003428550.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus pseudofirmus OF4]
 gi|288547775|gb|ADC51658.1| sporulation-specific ATP-dependent protein histidine kinase
           [Bacillus pseudofirmus OF4]
          Length = 588

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 62/223 (27%), Gaps = 11/223 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +        +++   L + I H+I +P+ +I    +L+     ++    +I       
Sbjct: 347 MLEKKMIRAEKLNIAGQLAAGIAHEIKNPLTSIKGFYKLIKHGMGKESYYTIIDDELDRI 406

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTGEKIDL 111
                   +       V  +  +  I + ++  +     +         Q          
Sbjct: 407 EQIANEFLILSKPHTDVFKVHSISRIIEEVKTLLETQAIIKGNDIITSYQYEEELLITCE 466

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++ +NL   A  +    G + I+V+        S+K  G      +   +I +  
Sbjct: 467 ETKIKQVFVNLIKNAIEATS-NGHIYITVKKRDQFVEISVKDEGCGI-SDDALARISEPF 524

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +         +      +    
Sbjct: 525 FTTKEKGTGLGLLICDKIIDNHNGTRKIVSKEGIGTTFTITFP 567


>gi|222053257|ref|YP_002535619.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221562546|gb|ACM18518.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 603

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 68/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIR 54
           +       L +  + A+  L   + H+I +P+ AI  +++++ +       ++    ++ 
Sbjct: 363 LESTFDELLVAKKVAAVGQLALGLSHEIRNPLSAIQMNMQMIRKKIDLAGTLRENFAIVD 422

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGE 107
                    LK +               L +I   +            +   V+     +
Sbjct: 423 GEIQRLNRLLKDVMDFARPRSLNLQNTELKEIISRLMQLLSQRLEEQLIRTTVRTESPIQ 482

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164
            +    +  ++LLNL + A  ++             + +    + ++   G      +  
Sbjct: 483 LVCDPEQIHQVLLNLILNAMEAMNETPGERHLTIFARSADGMALVTVSDTGGGIPQGKL- 541

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Q+ D    +      +    V  +   +   +  E         +  L 
Sbjct: 542 EQLFDPFYTTRASGGGLGLSIVQTIVLRHGGSVAVESQPGQGATFTVALP 591


>gi|90412687|ref|ZP_01220688.1| putative sensor outer membrane protein EnvZ [Photobacterium
           profundum 3TCK]
 gi|90326262|gb|EAS42681.1| putative sensor outer membrane protein EnvZ [Photobacterium
           profundum 3TCK]
          Length = 441

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 21/207 (10%), Positives = 59/207 (28%), Gaps = 8/207 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           ALL + + HD+ +P+  I  + E++        +         + + +            
Sbjct: 232 ALLLAGVSHDLRTPLTRIRLATEMMSPEDSYLADGMTKDTEECNEIISQFMDYLKSTKKP 291

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
               +D    L ++ +    +    +       G     +    + + NL + A      
Sbjct: 292 AMEDIDLNFLLQEVAESEGGYENEVELGLNDIPGRIEANAVAMKRCVANLVVNALRYGNG 351

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVI 187
             K++      +    + ++ NG   +  +                S  +   +    V 
Sbjct: 352 WVKISSGTSADRKSAWYCVEDNGPGIQEDQVSRMFQPLTRGDSARGSDAEGTGLGLAIVK 411

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  ++   +      D  + +   L 
Sbjct: 412 RIIDQHDGVITVTNRSDGGLKVQITLP 438


>gi|170078060|ref|YP_001734698.1| two-component sensor histidine kinase [Synechococcus sp. PCC 7002]
 gi|169885729|gb|ACA99442.1| two-component sensor histidine kinase [Synechococcus sp. PCC 7002]
          Length = 503

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 69/233 (29%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLI 53
           +A+     L  ++          + + H++ +PI  I   LEL+        E + ++L+
Sbjct: 260 LAQAFNSMLDRLETAFENQRQFLNDVGHELRTPITIIRGHLELMAIANLPFEEQKTVELV 319

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108
                     ++ + L               DIE  +E+       +  S    +     
Sbjct: 320 VDELDRMGRLVQELILLAKLERPNFLHYEPIDIESFLEELYTKITALTSSPRQWQRQGMV 379

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                   +   + L+NL   A        ++ + V  +     F L+ +G      +  
Sbjct: 380 TGILWGDRQRLTQALINLAQNAVQHTQPHDEICLGVTRTGKNLQFWLQDSGQGIAAADQT 439

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   G      +   +    V  +A  +   +      +     +  + 
Sbjct: 440 RIFERFARGRQVRGTEGSGLGLAIVKQVAIAHGGSITVASELNKGSTFTLTIP 492


>gi|332703597|ref|ZP_08423685.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553746|gb|EGJ50790.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 576

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 64/224 (28%), Gaps = 18/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMS 59
             +  +  L + + H++ +P+  I+    LL +                +   I  +   
Sbjct: 345 QRLSSIGRLAAGLAHEVNNPLAIINEQAGLLKDLLNRQADGPEKERYSRLADSILAAVKR 404

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                  M             + + ++       + ++  + D  + +        +  +
Sbjct: 405 CRDITHNMLGFARRMELAIEFLSINEVLAETLSFLRKEAESRDIEIILDLDPNLSTIPSD 464

Query: 115 R---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           R    ++ LN+   A A++   G++ IS +DS    + S++ NG                
Sbjct: 465 RGQLQQVFLNILNNALAAVSDKGRIQISSKDSGQNVLVSIEDNGCGMPKETLEHIFEPFF 524

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +       +       +            + LL K
Sbjct: 525 TTKKGRGTGLGLSITYGIVKRLGGDIDVRSTPGQGTTFTVLLPK 568


>gi|297568082|ref|YP_003689426.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296923997|gb|ADH84807.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 661

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 58/240 (24%), Gaps = 29/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S     +   + + H+I +P+  I    +LLD+  +  E  Q +  S  +  
Sbjct: 161 AKEEAERASQAK--SEFLASMSHEIRTPLTTILGMADLLDKTPLGAEQRQYVWASRAAGE 218

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
                                      D    L    +++             R+    +
Sbjct: 219 NLLDLINGILDLSKIEAGKLEIEVMEFDLDHLLRQTCEIMALRAHQKGLEFTCRLSWQGS 278

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLAR 159
              +  +    +IL+NL   A     RG     +V+             F +   G    
Sbjct: 279 CLVLGDATRIRQILVNLIGNAIKFTERGKVTVEAVRWPAEESAENTWFGFVVSDTGIGIP 338

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++     D                +       L       +     +      +  + 
Sbjct: 339 PDKQEMVFEDFAQVDSSTSRRYGGTGLGLAISRKLVQMMGGTIRLASREGEGSRFTVEIP 398


>gi|253701112|ref|YP_003022301.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251775962|gb|ACT18543.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 423

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + K     L +  + A+  L   I HD  + + A+    +LL             ++ I 
Sbjct: 165 LKKMESQLLHAQKMEAIGTLADGIAHDFNNIMTAVIGYTDLLMTELSPPAPYRGFLENIN 224

Query: 55  LSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            ++  AI      L + R     T  +     +  I  +++        +      + + 
Sbjct: 225 TATHRAITVVKNLLAYSRQEPMQTTRILGNDLIEGIFVLLKRVAGQGIELAWEPAPDTLP 284

Query: 111 LSRE---RAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152
           +  +     ++L+NL   A  ++P+                                ++ 
Sbjct: 285 IMVDQAQMEQVLVNLTANARDAMPQGGTLTITVDAVDLAPHEVQGYDHTRPGPHVRIAVS 344

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+     E  ++I D    +    +   +       +   +   +     +      S
Sbjct: 345 DTGSGI-DQETQSRIFDPFFTTKEAGNGTGLGLSISYGIVKRHGGFIRVASENGEGTTFS 403

Query: 211 ALLEK 215
            LL K
Sbjct: 404 ILLPK 408


>gi|94987520|ref|YP_595453.1| Signal transduction histidine kinase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731769|emb|CAJ55132.1| Signal transduction histidine kinase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 580

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 67/221 (30%), Gaps = 17/221 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59
               L ++  L S + H+I SP+ +I   +  L         +  +   +MQ I   +  
Sbjct: 355 QKDTLASIGSLASGVAHEIRSPLSSIKGYVNYLGDRLPYDSSDQELIKIIMQEIDRLNRV 414

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRER 115
               +        Y   +D    + D  ++++             +              
Sbjct: 415 ISDLIGLSVPTDVYPEYIDLQKVIEDTLRLVKLDAKRHSVELLFYRNEELPFVPLDPDRI 474

Query: 116 AKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            ++LLNL + A  ++P     K+   V  +  +    +   G      E   +I D    
Sbjct: 475 RQVLLNLCLNALDAMPDGGSLKIIFDVNKNTQQFFLEVIDTGMGIN-EEVLPRIFDPYFT 533

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +    V  +   +K  +L         +   +  
Sbjct: 534 TKLKGTGLGLSTVRKIVEAHKGTILVSSELGKGTIFRLVFP 574


>gi|53712464|ref|YP_098456.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215329|dbj|BAD47922.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 637

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 62/235 (26%), Gaps = 22/235 (9%)

Query: 1   MAKNICF------NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           M ++            +  + ++  + + H+I +P+ AI    E++     E E  + + 
Sbjct: 264 MRRSQELLEAKQRAEEADRMKSVFLANMSHEIRTPLNAIVGFSEIIALTEDEKEKEEYLG 323

Query: 55  LSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   ++ + L+                 +    T     +  +  + ++          +
Sbjct: 324 IIQQNSNLLLQLINDILDLSRIESGKSEMHCQLTEMSGLVDEVDKVHRLKMKKGVKLNVI 383

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + S     +       ++L N    A  +   G      V++ +      +   G     
Sbjct: 384 RPSEEIWILTDRNRVTQVLFNFLSNAIKNTIEGSITFGLVKE-EEWVKLYVTDTGCGISK 442

Query: 161 PEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +              +    +       +      R+  E            L 
Sbjct: 443 EKLPLIFTRFEKLNDFVQGTGLGLPICKSIVERLGGRIEVESELGQGSTFILYLP 497


>gi|51595548|ref|YP_069739.1| two component histidine kinase-sensor [Yersinia pseudotuberculosis
           IP 32953]
 gi|51588830|emb|CAH20444.1| possible 2-component Histidine kinase-sensor [Yersinia
           pseudotuberculosis IP 32953]
          Length = 604

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47
           M +             L A+  L + + H+I +P+ +I    +  +        E  +  
Sbjct: 352 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
            +++ +   + +    L  +R +      V+    +     +I           + +   
Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162
                        + LLNL++ A  ++ R G + I++    +++   S+   G   R  +
Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 531

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +    V  +  E++ R+               + 
Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582


>gi|323693798|ref|ZP_08107992.1| hypothetical protein HMPREF9475_02855 [Clostridium symbiosum
           WAL-14673]
 gi|323502145|gb|EGB18013.1| hypothetical protein HMPREF9475_02855 [Clostridium symbiosum
           WAL-14673]
          Length = 466

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 18/223 (8%), Positives = 63/223 (28%), Gaps = 18/223 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
            +      + S + H++ +P+  +   +E + +         ++      +  +  ++ +
Sbjct: 240 ENEKQKRRITSDVAHELRTPLTNLQTHMEAMIDGVWETTTARLESCHAEILRLVGIVEQL 299

Query: 68  R-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +                    +  + + D  ++      +   + +              
Sbjct: 300 QELYLLENKEQAPDKRRFDFRELCMEVFDGFEIKAKEKNIRLLMAMPPKTPIYADYYRLK 359

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173
           + ++NL   A A  P GG + +  +  +      ++ +G      +    F +    +  
Sbjct: 360 QCMINLISNALAYTPGGGHIAVEYRMREGHVEIKVRDDGPGIPEEDISHLFERFYRVDKS 419

Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    I       +   +   +  E  +    V +  L 
Sbjct: 420 RSKKTGGMGIGLAITKAIVKMHGGEISAENQNGQGAVFTINLP 462


>gi|323484834|ref|ZP_08090190.1| hypothetical protein HMPREF9474_01941 [Clostridium symbiosum
           WAL-14163]
 gi|323401830|gb|EGA94172.1| hypothetical protein HMPREF9474_01941 [Clostridium symbiosum
           WAL-14163]
          Length = 466

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 18/223 (8%), Positives = 63/223 (28%), Gaps = 18/223 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
            +      + S + H++ +P+  +   +E + +         ++      +  +  ++ +
Sbjct: 240 ENEKQKRRITSDVAHELRTPLTNLQTHMEAMIDGVWETTTARLESCHAEILRLVGIVEQL 299

Query: 68  R-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +                    +  + + D  ++      +   + +              
Sbjct: 300 QELYLLENKEQAPDKRRFDFRELCMEVFDGFEIKAKEKNIRLLMAMPPKTPVYADYYRLK 359

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173
           + ++NL   A A  P GG + +  +  +      ++ +G      +    F +    +  
Sbjct: 360 QCMINLISNALAYTPGGGHIAVEYRMREGHVEIKVRDDGPGIPEEDISHLFERFYRVDKS 419

Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    I       +   +   +  E  +    V +  L 
Sbjct: 420 RSKKTGGMGIGLAITKAIVKMHGGEISAENQNGQGAVFTINLP 462


>gi|301052302|ref|YP_003790513.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300374471|gb|ADK03375.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 462

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKENTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|260899677|ref|ZP_05908072.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308109466|gb|EFO47006.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 679

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  ++EL+     ++     E +  I
Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGEDASRVQEEIDAI 492

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 552

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL M A  ++   GK+ +  +D   E         +  +G    
Sbjct: 553 HTPVEINRHHLLQILVNLQMNAIHAMNGKGKLIVMSEDWIEEGEIKGAAIHVIDDGCGI- 611

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE   +I      +  D   +       +  +    L  E         S  L K
Sbjct: 612 KPENLNRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 667


>gi|153837771|ref|ZP_01990438.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
 gi|149748876|gb|EDM59711.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
          Length = 679

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  ++EL+     ++     E +  I
Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGEDASRVQEEIDAI 492

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFITDLQA 552

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL M A  ++   GK+ +  +D   E         +  +G    
Sbjct: 553 HTPVEINRHHLLQILVNLQMNAIHAMNGKGKLIVMSEDWIEEGEIKGAAIHVIDDGCGI- 611

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE   +I      +  D   +       +  +    L  E         S  L K
Sbjct: 612 KPENLNRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 667


>gi|229056423|ref|ZP_04195836.1| hypothetical protein bcere0026_5500 [Bacillus cereus AH603]
 gi|228720897|gb|EEL72446.1| hypothetical protein bcere0026_5500 [Bacillus cereus AH603]
          Length = 456

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 55/219 (25%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIR----------- 63
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +              
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +   V+     +        +       +   +++ 
Sbjct: 296 QMEKHNFFIQVQEVHLHPFLTRITEKINVMYGEKQIKAVFTCPSSLLVKLDEQRFEQVMA 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +        +K  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 454


>gi|188582930|ref|YP_001926375.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179346428|gb|ACB81840.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 676

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------------GIE 46
           + +     + S  L ++  + + + H+I +PI  I  +LE+  E              + 
Sbjct: 437 LEETRRQLVMSEKLASIGEITAGVAHEINNPIAVIQGNLEVAREALGPAADEVRTEFDLI 496

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           D+ +  + +     +   +    A      V + +    +  V       D  ++   T 
Sbjct: 497 DQQVHRVNMIVTRLLQFARPDEYAGYVETVVPAEVVTDCLVLVRHLLERADVAIEREDTA 556

Query: 107 EKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
            +          ++++NL + A  ++P GG + +  QD+           +   G     
Sbjct: 557 TRTVEISRTELQQVVINLMVNAIHAMPEGGLLRLKTQDNDYSGREGVAIEVSDTGVGIPA 616

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         T     +       L       +      +   +    L 
Sbjct: 617 DRLRKIFDPFFTTRTHGGTGLGLSISYTLIARYGGTITVHSELERGSIFVIWLP 670


>gi|148656428|ref|YP_001276633.1| nitrogen specific signal transduction histidine kinase NtrB
           [Roseiflexus sp. RS-1]
 gi|148568538|gb|ABQ90683.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 679

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 21/230 (9%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMS- 59
                 +  L A   L + + H+I +P+ +I N L LL           + L        
Sbjct: 446 EAIMRQNERLAASGRLAAAVAHEINTPLQSIQNYLYLLRSSSIEQSTAFLDLASSEITRV 505

Query: 60  --AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLS 112
              + RL  +      +  +     + +   ++         ++V           +   
Sbjct: 506 STLLHRLLDLHRPGDRSIELIDSNAIIERVVLLLGSALRGCSIRVEQELAPDLPRFLGQR 565

Query: 113 RERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               ++LLNL + A  ++P            +    Q ++      +  NG      +  
Sbjct: 566 DALMQVLLNLLLNAIDAMPCGGALRITTRRALETIDQSARWCVQIIVADNGPGI-AFDLQ 624

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +      +       L  ++   L  +    +       L 
Sbjct: 625 ERIFDPFFTTKPHGSGLGLAVSRQLVEQHGGSLRVQSTPGNGATFIVSLP 674


>gi|16611830|gb|AAL27373.1|AF426171_4 HydH [Yersinia pestis]
          Length = 607

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47
           M +             L A+  L + + H+I +P+ +I    +  +        E  +  
Sbjct: 355 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 414

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
            +++ +   + +    L  +R +      V+    +     +I           + +   
Sbjct: 415 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 474

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162
                        + LLNL++ A  ++ R G + I++    +++   S+   G   R  +
Sbjct: 475 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 534

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +    V  +  E++ R+               + 
Sbjct: 535 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 585


>gi|86156725|ref|YP_463510.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773236|gb|ABC80073.1| periplasmic sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 711

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 26/230 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRL 64
             M+ V LL   I HD  + +  I    ELL E           + Q  R  +      L
Sbjct: 342 QKMEAVGLLAGGIAHDFNNLLTGILGYAELLGEPGTAADEAAAGIRQAARRGAALTRQLL 401

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            F R        VD    + ++ +++E  +     ++         +  +  ++   +  
Sbjct: 402 GFARRGKYQQVPVDLHALVREVSELLERTLDKRIAIRHQLAAGTAVVRGDPDQLQQVVLN 461

Query: 125 ---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPEKFTQ 166
               A  ++P GG +T    +                      ++   G          +
Sbjct: 462 LAVNARDAMPSGGTLTFETAEVELDAEGTRARPGLAPGRHVAITVADTGVGIPAA-VRER 520

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +        +    V  +   +   +  E  +      + LL 
Sbjct: 521 VFDPFFTTKPAGQGTGMGLAMVYGIVQNHGGWVGFESEEGRGARFTVLLP 570


>gi|298505215|gb|ADI83938.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 60/222 (27%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-- 69
             + + H++ +P+  I    E L      ++       +++I   S      ++ +    
Sbjct: 368 FVANVSHELRTPVTVIKGYAEALAGGLVEEDPERAGRFLEIICSHSERLADLIRDLLTLS 427

Query: 70  -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDLSRERAKIL 119
                      T              + +     +  + +S        +       ++L
Sbjct: 428 QLESGGLQLELTQIHLDRAVSHAAGLLEQKAARKEIAIDISALAGAPPVLADPGRLEQVL 487

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A    P GG +T+S  ++      S+   G      +   +I +          
Sbjct: 488 INLMDNALKYTPPGGTITLSADEADGMVRVSVHDTGIGIPPKDLP-RIFERFYRVDAARS 546

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    V  +   +   +  E            L K
Sbjct: 547 RDEGGTGLGLSIVKHIIQLHGGNITVESEHGKGTTFRFTLRK 588


>gi|255655845|ref|ZP_05401254.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
 gi|296450876|ref|ZP_06892625.1| sensor histidine kinase KdpD [Clostridium difficile NAP08]
 gi|296879123|ref|ZP_06903118.1| sensor histidine kinase KdpD [Clostridium difficile NAP07]
 gi|296260248|gb|EFH07094.1| sensor histidine kinase KdpD [Clostridium difficile NAP08]
 gi|296429666|gb|EFH15518.1| sensor histidine kinase KdpD [Clostridium difficile NAP07]
          Length = 900

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +N    +    L + L   + HD+ +P+  I  ++                ELL  V  
Sbjct: 663 KENTNLEIERERLRSNLLRAVSHDLRTPLAGISGAVSTIIKNKGTIGQDIIDELLSGVYE 722

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + + +  +  + +S     +       ++  V+ +I     +       A+         
Sbjct: 723 DTQWLIRLVENLLSMTKIDEGKLEVKKHSELVEEIISEALQKIKKRIENALIDINIPEQI 782

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L+NL   +        K+ I+V +  +   F +  NG      E   
Sbjct: 783 LFVPMDAKLIEQVLINLIDNSLKYSKEDCKIEINVYEKDDYVWFEVSDNGPGI-SKELKK 841

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I D                 +       +   +K  ++ E   D        L K
Sbjct: 842 HIFDRFFTGEEGAKDSRKGVGLGLSICKSIIQAHKGEIMVEDNKDKGSTFKFSLPK 897


>gi|149921095|ref|ZP_01909554.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149818099|gb|EDM77556.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 776

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 73/227 (32%), Gaps = 17/227 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L S  + A+  L   + HD  + +  I  S EL    L++       +  I  ++ 
Sbjct: 408 EQQLLHSQKIQAIGTLAGGVAHDFNNLLTIITGSTELARLDLEDGLDVGPSLDEIEAAAA 467

Query: 59  SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    + +    R       +V+    + ++ Q++   +     +Q++ +     L  +
Sbjct: 468 RASRLTRQLLAFGRKQVLQPVAVELNALVRELAQLLTRVLGEHIHLQLALSEHPCWLLAD 527

Query: 115 RAKILLNLFM---VAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             ++   +      A  ++P GG     T      + E +  +   G     PE   +I 
Sbjct: 528 PGQLEQVVMNLAINARDAMPGGGTLTLTTSWTDPPEFEVLLEVADTGTGM-TPEVAARIF 586

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D    +      +    +  +  ++   +  +            L +
Sbjct: 587 DPFFTTKAMGTGLGLATLHGIVTQSGGSVQVQTAPGEGSRFLVRLPR 633


>gi|169830859|ref|YP_001716841.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169637703|gb|ACA59209.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 855

 Score =  121 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 64/237 (27%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +     +  +  +  + + + H+I +P+ +I    ELL    +         +++     
Sbjct: 617 EREKSQIQRLASLGQVAAGMAHEIKNPLVSIKTFAELLPEKYENPEFRINFSRIVSQEIE 676

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                +  +      +      +  G +       +     + + RV   +  +   L  
Sbjct: 677 RINNLVTELLGFARPSRLHCEEVNAGALMDEVLLLLSPQLDSQNIRVHRQYDPKVRPLWA 736

Query: 114 ERAKI---LLNLFMVAHASLPRG-------------GKVTISVQDSKNENIFSLKINGNL 157
           ++ ++     N+ +    ++  G              +       +  +    ++  G  
Sbjct: 737 DKNQLKQAFFNVCLNGIQAMSAGGELRVSILAESGGNQSDKGSAPTGGKVKIVVEDTGVG 796

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   ++ D    +  +   I       +  ++   +               L 
Sbjct: 797 ISAKE-KDRVFDPFFTTKPEGVGIGLSISHKIVVDHGGTIQIRSRQGEGATFEICLP 852


>gi|329725822|gb|EGG62301.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21172]
          Length = 608

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|323499281|ref|ZP_08104258.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
 gi|323315669|gb|EGA68703.1| hypothetical protein VISI1226_03645 [Vibrio sinaloensis DSM 21326]
          Length = 872

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 58/234 (24%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     ++  + + H+I +P+  I    E+L +  +      ++     S+ 
Sbjct: 370 AKEHAEAANQAK--SIFLANMSHEIRTPLNGIIGMTEILADSHLSAAQKDILNDVDASSH 427

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              + L+       + +    ++         V   V+ +    
Sbjct: 428 ALLVLINDILDLSKIESGNLALSPHMASVREIIFDTVNMVNSHALKQEVTLHVEFADHVP 487

Query: 108 KID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L+NL   A    P+G  +        +     +   G      +   
Sbjct: 488 NHLELDEFRVKQVLMNLMSNAIKFSPQGNVIMRVSVVEHHGLSIEVADTGVGIAEDKLAE 547

Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    G +        +       L      ++  E         +  L 
Sbjct: 548 IFKPFTQEDGTITRRFGGTGLGLTICNQLVDLMNGQISVESGLGEGSRFTFTLP 601


>gi|282918087|ref|ZP_06325837.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           D139]
 gi|282318372|gb|EFB48732.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           D139]
          Length = 608

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|151220230|ref|YP_001331053.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|212288553|sp|A6QD58|WALK_STAAE RecName: Full=Sensor protein kinase walK
 gi|150373030|dbj|BAF66290.1| sensor kinase protein [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 608

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|119714514|ref|YP_921479.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119535175|gb|ABL79792.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 628

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            +++   L  +D   + L + + H++ +P+  I  +LELL ++ +++         +   
Sbjct: 389 ERSLVRELQQLDDYRSQLIATLSHELRTPLTVISGNLELLGDLSLDETAQHYQEAMTRGT 448

Query: 61  IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK 108
               K +                    VD          +     +A    +++     +
Sbjct: 449 TRMQKVVDDLLLLARVSDPQHPLVQVPVDLNAVTRTTVDLLTAPALAKGLSLRLQHNPRE 508

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +     ++L NL   A    P GG VT++V+   +  +  +  +G      ++  
Sbjct: 509 HLVPGDPGELDRLLTNLVSNAVKYTPAGGTVTVTVERRGDAAVLEVADDGLGISEEDQVG 568

Query: 166 QIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +           +    V  +   +   +            +    
Sbjct: 569 LFRPFFRTTNPDALREPGTGLGLAIVATIVERHGGEVRVRSRLGVGTTFTVTFP 622


>gi|15923009|ref|NP_370543.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15925724|ref|NP_373257.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus N315]
 gi|21281748|ref|NP_644834.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49484931|ref|YP_042152.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57651128|ref|YP_184931.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus COL]
 gi|82749796|ref|YP_415537.1| two-component sensor histidine kinase [Staphylococcus aureus RF122]
 gi|87161483|ref|YP_492741.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88193842|ref|YP_498627.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266466|ref|YP_001245409.1| multi-sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150392499|ref|YP_001315174.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156978350|ref|YP_001440609.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508285|ref|YP_001573944.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253316857|ref|ZP_04840070.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
 gi|253730419|ref|ZP_04864584.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733820|ref|ZP_04867985.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|254663953|ref|ZP_05143425.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793557|ref|ZP_05642536.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9781]
 gi|258411137|ref|ZP_05681416.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9763]
 gi|258420959|ref|ZP_05683893.1| sensory box histidine kinase [Staphylococcus aureus A9719]
 gi|258423219|ref|ZP_05686111.1| two-component sensor histidine kinase [Staphylococcus aureus A9635]
 gi|258438598|ref|ZP_05689821.1| sensory box histidine kinase [Staphylococcus aureus A9299]
 gi|258443946|ref|ZP_05692284.1| two-component sensor histidine kinase [Staphylococcus aureus A8115]
 gi|258446238|ref|ZP_05694398.1| two-component sensor histidine kinase [Staphylococcus aureus A6300]
 gi|258449103|ref|ZP_05697209.1| two-component sensor histidine kinase [Staphylococcus aureus A6224]
 gi|258451348|ref|ZP_05699379.1| two-component sensor histidine kinase [Staphylococcus aureus A5948]
 gi|258454419|ref|ZP_05702387.1| two-component sensor histidine kinase [Staphylococcus aureus A5937]
 gi|262049449|ref|ZP_06022321.1| two-component sensor histidine kinase [Staphylococcus aureus D30]
 gi|269201709|ref|YP_003280978.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894298|ref|ZP_06302528.1| sensor protein kinase walK [Staphylococcus aureus A8117]
 gi|282902650|ref|ZP_06310543.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus C160]
 gi|282920738|ref|ZP_06328457.1| sensor protein kinase walK [Staphylococcus aureus A9765]
 gi|282921309|ref|ZP_06329027.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C427]
 gi|282927769|ref|ZP_06335383.1| sensor protein kinase walK [Staphylococcus aureus A10102]
 gi|283767809|ref|ZP_06340724.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           H19]
 gi|284023056|ref|ZP_06377454.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus 132]
 gi|295406883|ref|ZP_06816687.1| sensor protein kinase walK [Staphylococcus aureus A8819]
 gi|296276711|ref|ZP_06859218.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209433|ref|ZP_06925831.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297245918|ref|ZP_06929780.1| sensor protein kinase walK [Staphylococcus aureus A8796]
 gi|300911457|ref|ZP_07128906.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70]
 gi|81650258|sp|Q6GD71|WALK_STAAS RecName: Full=Sensor protein kinase walK
 gi|81695623|sp|Q5HJX6|WALK_STAAC RecName: Full=Sensor protein kinase walK
 gi|81704769|sp|Q7A215|WALK_STAAW RecName: Full=Sensor protein kinase walK
 gi|81704904|sp|Q7A305|WALK_STAAM RecName: Full=Sensor protein kinase walK
 gi|81706517|sp|Q7A8E0|WALK_STAAN RecName: Full=Sensor protein kinase walK
 gi|123098092|sp|Q2G2U4|WALK_STAA8 RecName: Full=Sensor protein kinase walK
 gi|123722426|sp|Q2FKN7|WALK_STAA3 RecName: Full=Sensor protein kinase walK
 gi|123740988|sp|Q2YUQ2|WALK_STAAB RecName: Full=Sensor protein kinase walK
 gi|212288550|sp|A7WWQ7|WALK_STAA1 RecName: Full=Sensor protein kinase walK
 gi|212288551|sp|A6TXG9|WALK_STAA2 RecName: Full=Sensor protein kinase walK
 gi|212288552|sp|A5INR0|WALK_STAA9 RecName: Full=Sensor protein kinase walK
 gi|212288554|sp|A8YYU2|WALK_STAAT RecName: Full=Sensor protein kinase walK
 gi|5114231|gb|AAD40238.1|AF136709_2 histidine kinase YycG [Staphylococcus aureus]
 gi|13699936|dbj|BAB41235.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus N315]
 gi|14245786|dbj|BAB56181.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21203183|dbj|BAB93884.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49243374|emb|CAG41791.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285314|gb|AAW37408.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus COL]
 gi|82655327|emb|CAI79707.1| two-component sensor histidine kinase [Staphylococcus aureus RF122]
 gi|87127457|gb|ABD21971.1| sensory box histidine kinase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87201400|gb|ABD29210.1| sensory box histidine kinase VicK, putative [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147739535|gb|ABQ47833.1| PAS/PAC sensor signal transduction histidine kinase [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149944951|gb|ABR50887.1| PAS sensor protein [Staphylococcus aureus subsp. aureus JH1]
 gi|156720485|dbj|BAF76902.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160367094|gb|ABX28065.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253725899|gb|EES94628.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728123|gb|EES96852.1| two-component sensor histidine kinase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257787529|gb|EEV25869.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9781]
 gi|257840022|gb|EEV64487.1| two-component system sensor histidine kinase [Staphylococcus aureus
           A9763]
 gi|257843149|gb|EEV67564.1| sensory box histidine kinase [Staphylococcus aureus A9719]
 gi|257846548|gb|EEV70570.1| two-component sensor histidine kinase [Staphylococcus aureus A9635]
 gi|257848157|gb|EEV72149.1| sensory box histidine kinase [Staphylococcus aureus A9299]
 gi|257850830|gb|EEV74774.1| two-component sensor histidine kinase [Staphylococcus aureus A8115]
 gi|257855064|gb|EEV78007.1| two-component sensor histidine kinase [Staphylococcus aureus A6300]
 gi|257857536|gb|EEV80431.1| two-component sensor histidine kinase [Staphylococcus aureus A6224]
 gi|257860878|gb|EEV83695.1| two-component sensor histidine kinase [Staphylococcus aureus A5948]
 gi|257863513|gb|EEV86273.1| two-component sensor histidine kinase [Staphylococcus aureus A5937]
 gi|259162446|gb|EEW47016.1| two-component sensor histidine kinase [Staphylococcus aureus D30]
 gi|262073999|gb|ACY09972.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282315724|gb|EFB46108.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           C427]
 gi|282590529|gb|EFB95607.1| sensor protein kinase walK [Staphylococcus aureus A10102]
 gi|282594146|gb|EFB99134.1| sensor protein kinase walK [Staphylococcus aureus A9765]
 gi|282597109|gb|EFC02068.1| sensory box histidine kinase VicK [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763343|gb|EFC03473.1| sensor protein kinase walK [Staphylococcus aureus A8117]
 gi|283461688|gb|EFC08772.1| sensor protein kinase walK [Staphylococcus aureus subsp. aureus
           H19]
 gi|283469248|emb|CAQ48459.1| sensor protein YycG [Staphylococcus aureus subsp. aureus ST398]
 gi|285815746|gb|ADC36233.1| Two-component sensor kinase [Staphylococcus aureus 04-02981]
 gi|294968348|gb|EFG44373.1| sensor protein kinase walK [Staphylococcus aureus A8819]
 gi|296885894|gb|EFH24829.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|297177283|gb|EFH36536.1| sensor protein kinase walK [Staphylococcus aureus A8796]
 gi|298693341|gb|ADI96563.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300887636|gb|EFK82832.1| sensor histidine kinase [Staphylococcus aureus subsp. aureus TCH70]
 gi|302331791|gb|ADL21984.1| multi-sensor signal transduction histidine kinase, WalK
           [Staphylococcus aureus subsp. aureus JKD6159]
 gi|312828582|emb|CBX33424.1| sensory box histidine kinase YycG [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129562|gb|EFT85554.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315197937|gb|EFU28270.1| sensor histidine kinase VicK [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|320141437|gb|EFW33280.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144419|gb|EFW36184.1| PAS domain S-box [Staphylococcus aureus subsp. aureus MRSA177]
 gi|323440406|gb|EGA98119.1| two-component sensor histidine kinase [Staphylococcus aureus O11]
 gi|323443114|gb|EGB00733.1| two-component sensor histidine kinase [Staphylococcus aureus O46]
 gi|329731734|gb|EGG68094.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21189]
 gi|329732539|gb|EGG68889.1| sensor protein kinase WalK [Staphylococcus aureus subsp. aureus
           21193]
          Length = 608

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|228937888|ref|ZP_04100516.1| hypothetical protein bthur0008_5640 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970769|ref|ZP_04131409.1| hypothetical protein bthur0003_5560 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228977344|ref|ZP_04137739.1| hypothetical protein bthur0002_5590 [Bacillus thuringiensis Bt407]
 gi|228782321|gb|EEM30504.1| hypothetical protein bthur0002_5590 [Bacillus thuringiensis Bt407]
 gi|228788894|gb|EEM36833.1| hypothetical protein bthur0003_5560 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228821794|gb|EEM67794.1| hypothetical protein bthur0008_5640 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938367|gb|AEA14263.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 463

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|254831077|ref|ZP_05235732.1| two-component sensor histidine kinase [Listeria monocytogenes
           10403S]
          Length = 591

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 74/228 (32%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65
            ++ +   + + H++ +P+ A+    E L +  + DE++       +   S     + + 
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113
            + L+      V   + L +++ VIE        +                +        
Sbjct: 423 ILALSRIEQNPVPENVELVEVDDVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|219666980|ref|YP_002457415.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfitobacterium hafniense DCB-2]
 gi|219537240|gb|ACL18979.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfitobacterium hafniense DCB-2]
          Length = 599

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51
            ++    L  ++LV  + + I H+I +P+  +   L+L           +   +    + 
Sbjct: 365 QQHEMARLERLNLVGQMAAGISHEIRNPLTTVKGFLQLRGIKVTDPDEKEYNDLMISEID 424

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   K    +         +  +  + Q   +    D  + ++        
Sbjct: 425 RANTIISEFLSLAKDNMGSTQEQDINQIIYRIFPMIQADANNGNKDLILNLNPLPSLWLN 484

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             E  ++LLN    A    P+GG V I   + +N  + ++K  G      E   +I    
Sbjct: 485 ENEIRQLLLNFVRNALEVTPQGGCVIIQTYEDRNNVVLAVKDQGCGI-PEEIRDKIGTPF 543

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +      +     + +AH +   L  +   D       + ++
Sbjct: 544 FTTKESGTGLGIAISMGIAHRHNAELTFD-TGDQGTTFKVIFKR 586


>gi|89897158|ref|YP_520645.1| hypothetical protein DSY4412 [Desulfitobacterium hafniense Y51]
 gi|89336606|dbj|BAE86201.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 599

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51
            ++    L  ++LV  + + I H+I +P+  +   L+L           +   +    + 
Sbjct: 365 QQHEMARLERLNLVGQMAAGISHEIRNPLTTVKGFLQLRGIKVTDPDEKEYNDLMISEID 424

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   K    +         +  +  + Q   +    D  + ++        
Sbjct: 425 RANTIISEFLSLAKDNMGSTQEQDINQIIYRIFPMIQADANNGNKDLILNLNPLPSLWLN 484

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             E  ++LLN    A    P+GG V I   + +N  + ++K  G      E   +I    
Sbjct: 485 ENEIRQLLLNFVRNALEVTPQGGCVIIQTYEDRNNVVLAVKDQGCGI-PEEIRDKIGTPF 543

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +      +     + +AH +   L  +   D       + ++
Sbjct: 544 FTTKESGTGLGIAISMGIAHRHNAELTFD-TGDQGTTFKVIFKR 586


>gi|227538418|ref|ZP_03968467.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227241700|gb|EEI91715.1| sensor histidine kinase/response regulator fusion protein
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1138

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            KNI   ++ ++  +       + + H++ +P+ +I    +LL +    +     I+ ++
Sbjct: 467 RKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIKYAT 526

Query: 58  ----------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------K 98
                           L   ++  G    V+  I +  + + IE    +           
Sbjct: 527 VIHSAGSDLLHLINELLDLAKIESGQIDLVEDHIDIHSLTRNIEGLFRISAEEKSINFKT 586

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            +        +       ++L NL   A      GGK+ ++ +   +   F ++ +G   
Sbjct: 587 TIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELAYKHVNSNIHFIVQDDGIGI 646

Query: 159 RFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                    +  +  DG+         +       LA     R+  E   D     + +L
Sbjct: 647 APEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFIL 706

Query: 214 E 214
            
Sbjct: 707 P 707


>gi|226314238|ref|YP_002774134.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226097188|dbj|BAH45630.1| probable two-component sensor histidine kinase [Brevibacillus
           brevis NBRC 100599]
          Length = 437

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 20/230 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + S  + A+  + + I H++ SP+ AI  + +LL     +     L++      + 
Sbjct: 190 EAQLIQSAKMAAIGEMAAGIAHELNSPLTAILGNSQLLMREMTDAPEAPLMKDIYQCGVR 249

Query: 63  -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDL 111
                   L F R       +      + D+  +I   ++V      R            
Sbjct: 250 CKKIIQNLLTFSRQEEYLFSTTSIDEVVEDVLGLIGYQLSVSGLTITREMYEPPLLFHGS 309

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFPEKFT 165
             +  +I++NL + A  ++       I        +++ +    S+  NG      +   
Sbjct: 310 RHQIEQIVINLLLNARDAVAGKEAPHIVIRSFLVQEENSSYVGLSVYDNGTGICEEQLSQ 369

Query: 166 QIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +     + +A  +  +L  E ++      + LL 
Sbjct: 370 IFQPFFSTKERTKGTGLGLSVSLGIAEAHGGKLFAESVEGEYSKFTMLLP 419


>gi|153948998|ref|YP_001401784.1| sensory box histidine kinase [Yersinia pseudotuberculosis IP 31758]
 gi|152960493|gb|ABS47954.1| sensory box histidine kinase [Yersinia pseudotuberculosis IP 31758]
          Length = 604

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47
           M +             L A+  L + + H+I +P+ +I    +  +        E  +  
Sbjct: 352 MREVRQLQEEIRRKEKLAAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
            +++ +   + +    L  +R +      V+    +     +I           + +   
Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162
                        + LLNL++ A  ++ R G + I++    +++   S+   G   R  +
Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGALEIALALVEESKLRISVIDTGKGIRAED 531

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +    V  +  E++ R+               + 
Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582


>gi|325962315|ref|YP_004240221.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468402|gb|ADX72087.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 551

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR--- 68
           L A     S + H+  +P+ +I   +E+L     ++    ++ +   ++   L  +    
Sbjct: 332 LAAKDDFVSSVSHEFRTPLTSILGYVEILLADEPDESQRDMLEIIRRNSERLLTLVSDLL 391

Query: 69  -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILL 120
                       +VD    +       +   A    V  + T ++++   +    +++L 
Sbjct: 392 ASRNGQLIVTPQTVDVAELVRSSVSSAQPRAAAAGLVLKADTPDRLEAHVDGARISQVLD 451

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----ST 175
           NL   A    P GG+V +++          +   G      +                + 
Sbjct: 452 NLVSNAIKYSPGGGRVLVTLAQEDGHLECRVTDTGMGMSPEDASEVFAKFFRASTVRRTA 511

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    +       +   +   +            +  + 
Sbjct: 512 IPGVGLGLPISKAIIDAHGGTIAVHSTLGEGTTFTFRVP 550


>gi|328473713|gb|EGF44548.1| sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 679

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  ++EL+     ++     E +  I
Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGEDASRVQEEIDAI 492

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFITDLQA 552

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL M A  ++   GK+ +  +D   E         +  +G    
Sbjct: 553 HTPVEINRHHLLQILVNLQMNAIHAMNGKGKLIVMSEDWIEEGEIKGAAIHVIDDGCGI- 611

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE   +I      +  D   +       +  +    L  E         S  L K
Sbjct: 612 KPENLNRIFSPFYTTKRDGTGLGLSVSQSILSQTGGELKAESEWGKGSTFSIYLPK 667


>gi|326940408|gb|AEA16304.1| sporulation kinase B [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 419

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTAESRDEYIKHILEE 249

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + +      +     L  +  +I     ++             + 
Sbjct: 250 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 413


>gi|323703747|ref|ZP_08115386.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531271|gb|EGB21171.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 482

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 62/245 (25%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNLSSMDLVALLC------------SRICHDIISPIGAIHNSLELLDE-----V 43
           +A++    L  ++  +               +   H++ +P+ +IH  LE+L        
Sbjct: 238 LAESFNGMLERLE-ASFAAERETKEQMRRFIADASHELRTPLTSIHGFLEVLLRGAVNQP 296

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIE-QVIEDFIA 95
               + ++ +   S      +  +       R              + D+E Q+      
Sbjct: 297 DQLHKALKSMHGESERLNKLVHDLLLLAKLDRTPHIELTEGLLNTVIRDMEPQLRILSGN 356

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKIN 154
               +++    +    + +  +++LNLF  A                   N    S++ N
Sbjct: 357 RKLSIEMEPNLKCKYDTDKIKQVILNLFHNAVQHTDPDEGQIKISLVRKNNGVALSVQDN 416

Query: 155 GNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G                              +       +   +   +            
Sbjct: 417 GPGISEDHLNRVFDRFYRIDSSRTRKYGGSGLGLAISKSIVDAHGGTISVTSQVGKGSTF 476

Query: 210 SALLE 214
           +  L 
Sbjct: 477 NIWLP 481


>gi|298481017|ref|ZP_06999212.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
 gi|298273040|gb|EFI14606.1| two-component system sensor histidine kinase/response regulator,
           hybrid (one component system) [Bacteroides sp. D22]
          Length = 885

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 501 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 558

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 559 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 618

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 619 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 676

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 677 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724


>gi|282899300|ref|ZP_06307269.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195757|gb|EFA70685.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 315

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           ++I        L     S + H++ +P+ AI  +LE+L      DE    ++++++   +
Sbjct: 79  QDISERHEVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIGVSN 138

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           S   +      + L    +G +   + L DI  +++  +   + +    + E    + + 
Sbjct: 139 SERLLRLVNNILNLEMLDSGKMRLNLKLCDINIMVKQAMETVRPIAQQNSIEISYNTLDV 198

Query: 116 A------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L NL   +      G KV I    S  E I ++K  G      + 
Sbjct: 199 PNTEILADEETIVQVLTNLLSNSIKFSHSGNKVEIYATVSNKEIIVAVKDYGKGVPPHKL 258

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +  +++ ++  E I          L 
Sbjct: 259 ETIFERFEQVDVSDSRQKGGTGLGLAICKNIVEKHQGKIWVESILGSGSTFYFTLP 314


>gi|229087943|ref|ZP_04220053.1| hypothetical protein bcere0022_44970 [Bacillus cereus Rock3-44]
 gi|228695356|gb|EEL48231.1| hypothetical protein bcere0022_44970 [Bacillus cereus Rock3-44]
          Length = 672

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEENTYEKHNKYFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 SNSIITEFLSMGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDISELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|77919589|ref|YP_357404.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77545672|gb|ABA89234.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Pelobacter carbinolicus DSM 2380]
          Length = 366

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 60/231 (25%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            +  L  L  L + + H+I +P+G I  + +LL+     D  ++         + R+  +
Sbjct: 133 QADRLAMLGTLAAGLAHEIKNPLGGIKGAAQLLNLELPPDNPLREYTRVMTREVNRVNDL 192

Query: 68  RLAFGYTGSVDS---------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                                 I    I    +          +        +  +   +
Sbjct: 193 IEELLDLTRPRPTQLGEVNLSRILADQILMQKQGHPDKQITYHMQLDPSIPPIRGDENLL 252

Query: 119 LLNLF---MVAHASLPRGGKVTISVQDSKN------------ENIFSLKINGNLARFPEK 163
                     A  ++   G +T++ + +                   ++ NG      E 
Sbjct: 253 SRLFLNLLKNAAEAIEGEGTITVTSRIAGQYLYNKPGERPVPMVTVEIQDNGPGIPPDEL 312

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I      +      +       + +E++  L            +  L 
Sbjct: 313 -DRIFTPFFTTKTKGCGLGLAICQKIINEHQGSLRVSSQAGQGTSFTISLP 362


>gi|258516550|ref|YP_003192772.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780255|gb|ACV64149.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 556

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 73/221 (33%), Gaps = 13/221 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M K I   L  ++LV  + + I H+I +P+  +   L+LL       +  +   L     
Sbjct: 322 MEKEIA-RLDKLNLVGEMAAGIGHEIRNPMTTVRGFLQLLASKEECVKYKEYYDLMIEEL 380

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 +                      L  +  + Q        D ++++    + I 
Sbjct: 381 DRANSIITEYLSLAKNKPVSLRMVNLNSILATIFPLIQADVLKRNNDVKMEIKDVPDLIL 440

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              E  +++LNL   +  ++P GG +TI     K+  +  ++  G+     E   +I   
Sbjct: 441 DENEIRQLILNLVRNSLEAMPLGGNLTIKTFQDKDFVVLEVQDEGSGIPL-ELLDKIGTP 499

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              +  +   +       +A  +   +     D    V S 
Sbjct: 500 FFTTKDEGTGLGLAVCFSIAARHNASIEV-NTDSSGTVFSV 539


>gi|228939760|ref|ZP_04102340.1| hypothetical protein bthur0008_24140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972642|ref|ZP_04133244.1| hypothetical protein bthur0003_24110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979231|ref|ZP_04139572.1| hypothetical protein bthur0002_24150 [Bacillus thuringiensis Bt407]
 gi|228780507|gb|EEM28733.1| hypothetical protein bthur0002_24150 [Bacillus thuringiensis Bt407]
 gi|228787083|gb|EEM35060.1| hypothetical protein bthur0003_24110 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819919|gb|EEM65964.1| hypothetical protein bthur0008_24140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 360

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTAESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + +      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|89896508|ref|YP_519995.1| hypothetical protein DSY3762 [Desulfitobacterium hafniense Y51]
 gi|89335956|dbj|BAE85551.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 473

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSM 58
            + I   +    L + L   + HD+ +P+ A+  +  LL +   +  + +   L    S 
Sbjct: 236 REEIRVAMERERLRSTLLRSVAHDLRTPLTALTGASSLLTDKFEQLSLEEQKKLAADISE 295

Query: 59  SAIIRLKFMRLAFGY----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             I    F+                    + +  + +        I  ++ ++VS   E 
Sbjct: 296 EMIWLANFVENILNMTRIGEGQLFLHKEDEVVDDVVNEATSHMSRILQNRHLEVSLPNEV 355

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I L  +     ++L+NL   A    P    + + V    N+ +F +  NGN     +   
Sbjct: 356 ISLPMDGKLVVQVLVNLLDNAVKHTPLESCIDLKVGILGNDVVFEVCDNGNGI-AEDIMN 414

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ DG                +       +   +   +  E            L 
Sbjct: 415 RLFDGFTTPKNNIIDGKRGMGLGLAICKAIVEAHGGAIRAENQPAGGARFVFSLP 469


>gi|119714461|ref|YP_921426.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119535122|gb|ABL79739.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 549

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 74/233 (31%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60
           A +I   + ++ +     + + H++ +P+ +I   +  LL++  +  + +  +R+   +A
Sbjct: 311 ATDITELMRALAVKEEFVATVSHELRTPLTSIVGYVAILLEDDTLSAQAVAQLRVVDRNA 370

Query: 61  IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                     ++ A    G V       D+ ++    +       ++   E     R+  
Sbjct: 371 ARLTALVEALLQEAHHADGPVPLEREEVDLARIARASVDAAAPTALAEGVEIECDLRDPV 430

Query: 117 ----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ NL   A    PRGG+  +S +        ++  NG      E+   
Sbjct: 431 LVVADPQLLAQVVDNLVSNAIKYTPRGGRARVSARRDGERVELTVADNGIGISEAERGQL 490

Query: 167 IVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         I    +       +   +  ++  +       V    L 
Sbjct: 491 FTRFFRTRAATESAIQGVGLGLSIAKAIVESHGGQIEVDSEAGRGSVFRVWLP 543


>gi|290892663|ref|ZP_06555655.1| histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557723|gb|EFD91245.1| histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 591

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 68/228 (29%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE      + +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSR 113
           +                 VD    +    + I +                 +        
Sbjct: 423 ILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSGSVMIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +I++NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|298529348|ref|ZP_07016751.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510784|gb|EFI34687.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 506

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 19/229 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
           M K +     S  L A+  L + I H+I +P+ AI      +L    ++      + +  
Sbjct: 272 MEKRLQ---QSEKLAAIGELSTYIAHEIRNPLFAIGGFANAVLRNPDLDAVSRDKVNIIL 328

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116
             +    + ++    +    + +    D+  V+++ + +                     
Sbjct: 329 QESKRLDRILKSIINFARPTEPVQQEVDVNGVVQEVMQLFNLTCKEQDVSIEMEMPPNMA 388

Query: 117 ----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     + ++NL   A  ++P GG + +         +  +   G      E   +
Sbjct: 389 KARGDPELLKQCIINLVKNALEAMPEGGTLGLETFVEWEFVVIEVSDTGKGI-SKEIRDK 447

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +       +       +  +   ++    ++     ++  L 
Sbjct: 448 IFNPFYSTKENSGAGLGLAMTKKILDDMGGKIDVLSLEGQGTSITIRLP 496


>gi|206969170|ref|ZP_03230125.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206736211|gb|EDZ53369.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 458

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 458


>gi|148657870|ref|YP_001278075.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
 gi|148569980|gb|ABQ92125.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
            RS-1]
          Length = 1039

 Score =  121 bits (302), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 28/231 (12%)

Query: 12   MDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKF 66
              + +   + + H++ +P+ +I   +++L +        E + +  I  S+   ++ L  
Sbjct: 784  ERMKSEFVAMVSHELRTPLTSIKGYVDMLLDGDAGPLADEHQELLRIVKSNADRLLLLIN 843

Query: 67   MRLAFG---------YTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKID------ 110
              L            +   +D    +  +   +     A  +R+ +       D      
Sbjct: 844  DLLDMSRIEAGKLSLHRIPLDLRPLIRQVAATMRPHLDAKQQRLTLDLPETPPDGSAPLI 903

Query: 111  --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               +    +IL NL   A    P  G++TI +         +++  G      E+     
Sbjct: 904  AGDAARFHQILTNLLSNAIKYTPPNGEMTIRLTAEPPWLCITVQDTGIGMTPEEQDHIFD 963

Query: 169  DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       L   +  R+  E            + 
Sbjct: 964  RFYRARNRATRETGGTGLGLAITRSLVELHDGRITVESQPGKGSTFRVYVP 1014


>gi|251781984|ref|YP_002996286.1| two-component sensor histidine kinase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390613|dbj|BAH81072.1| two-component sensor histidine kinase [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
          Length = 450

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 66/224 (29%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L  S + H++ +P+ ++ + LE LDE      I    +++    +   +  +  +     
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGAIKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------------QVSWTGEKIDLSRER 115
               V  L             I     +                     +      + + 
Sbjct: 271 IDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQQTGTGKVYEIVRDYPITSVWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|126652336|ref|ZP_01724512.1| Two component system histidine kinase [Bacillus sp. B14905]
 gi|126590911|gb|EAZ85024.1| Two component system histidine kinase [Bacillus sp. B14905]
          Length = 452

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 66/232 (28%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
           + + ++L  ++ +     S + H++ SP+ +I      L +       ++  + +I   +
Sbjct: 217 EEMAYDLQQLEQMRKEFVSNVSHEVQSPLTSISGYALALKQVDLTDEEKNRYLDIIMAEA 276

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGL---------GDIEQVIEDFIAVDKRVQVSWTGEK 108
                    +            +  +           I  +   ++A +    +      
Sbjct: 277 QRMSKMSDSLLKLSLLESKAPPMQPVSLSLDEQIRRVIVAIQPQWMAKNIHFNLQLQSMY 336

Query: 109 IDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
           +    ++  ++  NL   +      G  + IS+    +  +  +   G      +    F
Sbjct: 337 VMADYDQLNQVWTNLLTNSIKFSKDGDTIKISMSQEAHHVLVRITDTGIGISQEDQKRVF 396

Query: 165 TQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +   +    V  +   +K  +  E            L 
Sbjct: 397 ERFFKADRSHSPKYEGSGMGLAIVKQIVSLHKGDVRVESELGQGTTFIVTLP 448


>gi|85858812|ref|YP_461014.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85721903|gb|ABC76846.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 415

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 66/236 (27%), Gaps = 24/236 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQL 52
            K       S    AL  + + I H+I +P+G+I     LL        +      ++  
Sbjct: 166 EKLESMAKRSEKFTALGEMAANIAHEIRNPLGSIELYASLLMKESKNDRDQNRISRIISS 225

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEK 108
           ++         L F +        +     L +I    E  I  +          +    
Sbjct: 226 VKKMDNKISNLLLFTKNRKLILKRISLHHFLNEILGSCEPLIDQEKIFINTTYADYEPWI 285

Query: 109 IDLSRERAKILLNLFMV----------AHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
              +    ++  NL +                         ++  ++     ++ +G   
Sbjct: 286 EGDAEMLKQVFFNLILNALQSLDPEGGTIDFETICPHSGQDMETDESYIEVKIRDSGIGI 345

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I D    +  +   +    V  +   ++  +  E ++    V   LL 
Sbjct: 346 -PREYLNRIFDPFFTTKEEESGLGLTIVHNIIEMHRGVIHVESVEQEGTVFHVLLP 400


>gi|330505538|ref|YP_004382407.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328919824|gb|AEB60655.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 962

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 63/237 (26%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54
           M ++    +  +   +   S + H++ +P+ AI  SL L++   +         ++ + +
Sbjct: 472 MDQSEAKRIERLK--SEFVSTVSHELRTPLTAIAGSLGLINGGALGPVPEGMRTMLSIAQ 529

Query: 55  LSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +S      +  +                    +  L D     + +    +        
Sbjct: 530 ANSQRLSHLINDLLDMDKLEAGKMQFDLQPCPLVAQLQDALDSNQAYADRQQIQLRLLDC 589

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +  +     ++L N    A    P G +V +  +         +   G      E 
Sbjct: 590 PPARVRIDAIRLQQVLANFISNAVKYSPPGAEVHLRAERRDTRVRVEVIDQGPGI-AGEF 648

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I             +     +       L      ++  + ++         L 
Sbjct: 649 RQRIFSKFSQADASDSRSKGGTGLGLAISKELIERMGGQIGFDSVEGQGACFWFELP 705


>gi|299537174|ref|ZP_07050477.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
 gi|298727415|gb|EFI67987.1| two-component hybrid sensor and regulator [Lysinibacillus
           fusiformis ZC1]
          Length = 914

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
              + +  M   + L S + H++ +P+ ++    ELL     +   +++ +  I   ++ 
Sbjct: 570 TREYEVDQMK--SELVSTVSHELRTPLSSVLGFTELLLTKNIKPERQNKYIDTIHREAVR 627

Query: 60  AIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
               +            +  +       + I    + +   +       +  +       
Sbjct: 628 LTNLINDFLDLQRMESGKQQYNMETLQLNEIAFEIVNRFRHEQKHNVHLIDKAREVYVNA 687

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++ +NL   A    P+GG V I +++  N    S+K  G      +        
Sbjct: 688 DQDRLVQLFINLIGNAIKFSPQGGDVEILLENKNNSIQVSIKDEGIGISKQDIAQLFQKF 747

Query: 171 -----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++   I    +       +  +++  +  E  +     +   L 
Sbjct: 748 KRIDNSLRRKIGGTGLGLSICREIILKHEGEIWIESEEGQGTTVYFTLP 796


>gi|284802938|ref|YP_003414803.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284996079|ref|YP_003417847.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
 gi|284058500|gb|ADB69441.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5578]
 gi|284061546|gb|ADB72485.1| two-component sensor histidine kinase [Listeria monocytogenes
           08-5923]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65
            ++ +   + + H++ +P+ A+    E L +  + DE++       +   S     + + 
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113
            + L+      V   + L ++++VIE        +                +        
Sbjct: 423 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|255029104|ref|ZP_05301055.1| two-component sensor histidine kinase [Listeria monocytogenes LO28]
          Length = 581

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65
            ++ +   + + H++ +P+ A+    E L +  + DE++       +   S     + + 
Sbjct: 344 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 403

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113
            + L+      V   + L ++++VIE        +                +        
Sbjct: 404 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 463

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 464 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 522

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 523 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 570


>gi|255025954|ref|ZP_05297940.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J2-003]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65
            ++ +   + + H++ +P+ A+    E L +  + DE++       +   S     + + 
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113
            + L+      V   + L ++++VIE        +                +        
Sbjct: 423 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|158425662|ref|YP_001526954.1| periplasmic sensor signal transduction histidine kinase
           [Azorhizobium caulinodans ORS 571]
 gi|158332551|dbj|BAF90036.1| periplasmic sensor signal transduction histidine kinase
           [Azorhizobium caulinodans ORS 571]
          Length = 453

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 66/238 (27%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +++     S  + A   +   H++ +P+ ++   +E L     ++    +  + ++   +
Sbjct: 202 RDLTAQRRSEQMRADFVANASHELRTPLASLSGFIETLLGPAKNDAAARERFLGIMGAQA 261

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108
                 +  +        +V                    +          + +   G  
Sbjct: 262 RRMSRLIDDLLSLSRIELNVHVRPDTVVDLCGILSHVRDTLGPLAQDRAITITLETDGSA 321

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLARFP 161
           + +  +R +++     +   +L  GG                 +    S++  G     P
Sbjct: 322 MPVRGDRDELIRLFENLVENALKYGGTGQNVDVRIAREPGTQGDVAAVSVRDYGPGI-AP 380

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   ++ +                 +    V  +   ++ RL+ E         +  L
Sbjct: 381 EHLPRLTERFYRVDVAASRDQGGTGLGLAIVKHIVARHRGRLMVESTPGKGATFTVRL 438


>gi|16804538|ref|NP_466023.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47096093|ref|ZP_00233694.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|224499856|ref|ZP_03668205.1| two-component sensor histidine kinase [Listeria monocytogenes
           Finland 1988]
 gi|224503259|ref|ZP_03671566.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           R2-561]
 gi|254900362|ref|ZP_05260286.1| two-component sensor histidine kinase [Listeria monocytogenes
           J0161]
 gi|254913399|ref|ZP_05263411.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
 gi|254937780|ref|ZP_05269477.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|16411988|emb|CAD00578.1| two-component sensor histidine kinase [Listeria monocytogenes
           EGD-e]
 gi|47015554|gb|EAL06486.1| histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|258610383|gb|EEW22991.1| two-component sensor histidine kinase [Listeria monocytogenes
           F6900]
 gi|293591405|gb|EFF99739.1| two-component sensor histidine kinase [Listeria monocytogenes
           J2818]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65
            ++ +   + + H++ +P+ A+    E L +  + DE++       +   S     + + 
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113
            + L+      V   + L ++++VIE        +                +        
Sbjct: 423 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|294646773|ref|ZP_06724396.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294807695|ref|ZP_06766488.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|292637933|gb|EFF56328.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294445131|gb|EFG13805.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|295084434|emb|CBK65957.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 820

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 553

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLADNQIV-FHVTDTGTGI-EPEKVGRVF 611

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 659


>gi|73749306|ref|YP_308545.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
           CBDB1]
 gi|73661022|emb|CAI83629.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
           CBDB1]
          Length = 852

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +N      +     L A+  + + I H+I +P+  +    ELL    D        +Q+I
Sbjct: 472 ENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIGFSELLAAREDLPEDIMADLQVI 531

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWT 105
              S   +  ++ +         V + + +             V +       R      
Sbjct: 532 NHGSQRVVEIVRRLLTFARQNKPVKTRLNVHELIDNTLEFRSYVFKTANIEVIRKYDQNL 591

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
                   +  ++ LNL + A  ++ +       TI+     +     +  +G     PE
Sbjct: 592 PWITADPGQLQQVFLNLVINAEQAMRKAHDGGKLTITTTREDSFFSICIADDGPGM-TPE 650

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I      +    D   +     + +  ++   +  E         +  L 
Sbjct: 651 VKAKIFQPFFTTKGPKDGTGLGLSLAMAIILDHHGTIEVESEYGRGTAFTINLP 704


>gi|260578370|ref|ZP_05846284.1| sensor histidine kinase [Corynebacterium jeikeium ATCC 43734]
 gi|258603392|gb|EEW16655.1| sensor histidine kinase [Corynebacterium jeikeium ATCC 43734]
          Length = 486

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 17/209 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI---------IRLKFMRLAFGY 73
            H++ +P+ ++    EL      +D  M + R+S  +             ++        
Sbjct: 272 SHELRTPLTSVRGYAELYQSGATDDAPMVIDRISEEAGRMSLLVEDLLALVRMDEGRPLA 331

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASL 130
              VD L  + +  +             V+ TG+   +  +     ++L NL   A    
Sbjct: 332 KNRVDMLELVLETAESARAGFPNRTVQVVNETGDVPIVIGDVNRLHQVLGNLVTNALRHA 391

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST--IDSHDIQFYY 185
               +V + +       I  ++ NG      +    F +    +V  +       +    
Sbjct: 392 GEDAEVKLRLDKRDGHVIVDVEDNGRGIPAEDVPHLFERFYRPDVSRSRASGGSGLGLSI 451

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  L   +   +  +  +         L 
Sbjct: 452 VKGLVEAHGGTVSVDSEEGQGTRFRIDLP 480


>gi|149180956|ref|ZP_01859457.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148851240|gb|EDL65389.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 607

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+  + + LE L      +  I    + + +  +   I  +  +     
Sbjct: 380 FVSNVSHELRTPLTTMRSYLEALAEGAWQDEEIAPRFLSVTQDETERMIRLVNDLLQLSK 439

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERAKILLN 121
                               + +    ++ ++ V                  +  ++L N
Sbjct: 440 MDSKDYRFNKEWIEFVGFFHQIIDRFEMSKNQNVTFKRQLPKTALFVEIDKDKLTQVLDN 499

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A    P GG +  +V +     + S+   G           F +    +      +
Sbjct: 500 IISNALKYSPEGGLIAFNVVEKDKMIVVSVSDQGLGIPQDNLSKIFERFYRVDKARSRQM 559

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E  +     +S  L 
Sbjct: 560 GGTGLGLAIAKEMISAHGGNIWAESKEGKGTTISFSLP 597


>gi|94271664|ref|ZP_01291992.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93450380|gb|EAT01592.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 378

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------Q 51
            K +   +  +  +VA+  + + + H+I +P+G I   L+L      +  V+       +
Sbjct: 122 EKELAEKIRHTEKMVAMGQMTAGLAHEINNPLGVILCYLDLAKRQATDPLVLGDLEIIEK 181

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107
             R         L F R    +    +    + ++  ++    A    V           
Sbjct: 182 QTRGCKKIVGDLLAFARGGESHKKLQELAPIIKEVVDMVAPQFAKQGVVIDLSLAGELPP 241

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFPEKF 164
            +  + +  ++ LNL M A  ++P  G         ++        ++ NG      E  
Sbjct: 242 LLLDNNKLKQVFLNLLMNACQAMPPKGGRIEIKAVLESPAGRVRVWVRDNGEGIAAAEV- 300

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +    +   +       +  E+   +  E            L 
Sbjct: 301 ERIFEPFFSTKATGEGTGLGLAVSYGIIKEHGGDIEVESRLGEGSCFIIDLP 352


>gi|68535407|ref|YP_250112.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium
           K411]
 gi|68263006|emb|CAI36494.1| two-component system sensor kinase TcsS1 [Corynebacterium jeikeium
           K411]
          Length = 536

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 17/209 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI---------IRLKFMRLAFGY 73
            H++ +P+ ++    EL      +D  M + R+S  +             ++        
Sbjct: 325 SHELRTPLTSVRGYAELYQSGATDDAPMVIDRISEEAGRMSLLVEDLLALVRMDEGRPLA 384

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASL 130
              VD L  + +  +             V+ TG+   +  +     ++L NL   A    
Sbjct: 385 KNRVDMLELVLETAESARAGFPNRTVQVVNETGDVPIVIGDVNRLHQVLGNLVTNALRHA 444

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST--IDSHDIQFYY 185
               +V + +       I  ++ NG      +    F +    +V  +       +    
Sbjct: 445 GEDAEVKLRLDKRDGHVIVDVEDNGRGIPAEDVPHLFERFYRPDVSRSRASGGSGLGLSI 504

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  L   +   +  +  +         L 
Sbjct: 505 VKGLVEAHGGTVSVDSEEGQGTRFRIDLP 533


>gi|219667637|ref|YP_002458072.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537897|gb|ACL19636.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 473

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSSM 58
            + I   +    L + L   + HD+ +P+ A+  +  LL +   +  + +   L    S 
Sbjct: 236 REEIRVAMERERLRSTLLRSVAHDLRTPLTALTGASSLLTDKFEQLSLEEQKKLAADISE 295

Query: 59  SAIIRLKFMRLAFGY----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             I    F+                    + +  + +        I  ++ ++VS   E 
Sbjct: 296 EMIWLANFVENILNMTRIGEGQLFLHKEDEVVDDVVNEATSHMSRILQNRHLEVSLPNEV 355

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I L  +     ++L+NL   A    P    + + V    N+ +F +  NGN     +   
Sbjct: 356 ISLPMDGKLVVQVLVNLLDNAVKHTPLDSCIDLKVGILGNDVVFEVCDNGNGI-AEDIMN 414

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ DG                +       +   +   +  E            L 
Sbjct: 415 RLFDGFTTPKNNIIDGKRGMGLGLAICKAIVEAHGGAIRAENQPAGGARFVFSLP 469


>gi|320354562|ref|YP_004195901.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123064|gb|ADW18610.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 571

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 30/240 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------L 52
           M + +     +  + A+  L + I HD  +P+ AI  S ++L       E +       L
Sbjct: 329 MERQMR---EAEKMAAIGELSASIAHDFRNPLAAISGSAQILAMEHNPLETLDATTFKTL 385

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----------DKRVQ 101
           + + S  +    K +     +           D  +V+++ IA            + R +
Sbjct: 386 VAIISRESNRMAKTITDFLQFARPAPIQPEWFDFNRVVDEVIAHLSAGTKTAAVTEIRKE 445

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-------KVTISVQDSKNENIFSLKIN 154
           ++   +     ++   IL +L   A +++                  D +      ++  
Sbjct: 446 IAEHLDCWADRQQMQTILGHLLENASSAMGASPGSIVIAAHDNDRTGDGQGSLWVEIRDQ 505

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G     PE   ++      S  D   +    V  +   +   +  +       ++     
Sbjct: 506 GPGI-PPELRDKVFTPFFSSRTDGTGLGLSIVRQIVENHCGTVEIDSATPQGCIVRLRFP 564


>gi|308274435|emb|CBX31034.1| hypothetical protein N47_E45460 [uncultured Desulfobacterium sp.]
          Length = 492

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 64/232 (27%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQL 52
           + K     L S  + +L  L + + H + +P+ +I    +L      L+E    D     
Sbjct: 251 LEKAQIQILQSEKMASLGKLAAGVAHQLNNPLSSITLFTQLVLEEYNLEEGARNDLTRIF 310

Query: 53  IRLSSMSA--IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKI 109
                        L+F R       S D    +     + E+     + +++   +    
Sbjct: 311 KEAQRCRDTVKELLEFARQTRHEMRSHDINTAISRTLFLFENQTLFHNIKIEKDLSPSLP 370

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
           ++  +  ++      +   +           +       K+  +  +   G         
Sbjct: 371 EVYGDIQQLNHVFMNIILNAADAMEGKGKLTIKSYRHPEKDIVVVEISDTGQGIPEN-IL 429

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +    +        +       +   +K ++  + + D        L 
Sbjct: 430 PHIFEPFFTTKEQGKGTGLGLSLAYSILDNHKGKIYAKSVKDKGTTFVIELP 481


>gi|270307577|ref|YP_003329635.1| sensor histidine kinase [Dehalococcoides sp. VS]
 gi|270153469|gb|ACZ61307.1| sensor histidine kinase [Dehalococcoides sp. VS]
          Length = 1062

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 75/231 (32%), Gaps = 19/231 (8%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
             K I   L  +  + ++  L S + H+I +P+  I    ELL    +E+ + + ++    
Sbjct: 815  RKQIEQQLIMTDRMASVGELASGLAHEINNPLTGIVGFSELLLMNELEESIKEDVQTIHR 874

Query: 59   SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKID 110
             A+         L F R       + D  + +  + ++ +    ++    +     +   
Sbjct: 875  EALRAAEVVRNLLTFARQQPPTRKAGDINLSIHKVLELRKHDHRINNIRCITELDPDLPR 934

Query: 111  LSRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +  +  +I   L  +   +     L    ++ I         I S+  NG     PE   
Sbjct: 935  VMLDFFQIQQVLINIIINAEFFLRLKEHPQIIIKTSQHNKHVIISISDNGPGI-SPENIK 993

Query: 166  QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +  E+  R+  E    +       L 
Sbjct: 994  RIFDPFFTTKEVGKGTGLGLSICHGIIEEHNGRISVESTPRNGTTFRIELP 1044


>gi|299145530|ref|ZP_07038598.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298516021|gb|EFI39902.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 810

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 17/226 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E    +E  + I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRNERQEYIKIVQENNE 637

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                        +VD      +I + +   ++    +       +  
Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCAEIIKSMSMKVSKGVELIFEEPFPECY 697

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     +++ N    A     +G       Q S  +  F ++  G      ++ +  
Sbjct: 698 IYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVF 757

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  + +    +       +  +    +  +  +         
Sbjct: 758 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGIGSCFWFT 803


>gi|229194709|ref|ZP_04321502.1| hypothetical protein bcere0001_2960 [Bacillus cereus m1293]
 gi|228588812|gb|EEK46837.1| hypothetical protein bcere0001_2960 [Bacillus cereus m1293]
          Length = 674

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 448 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 507

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 508 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 567

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 568 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 626

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 627 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 663


>gi|119472186|ref|ZP_01614388.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
 gi|119445105|gb|EAW26399.1| sensor histidine kinase with multiple PAS/PAC and a response
           regulator receiver domain [Alteromonadales bacterium
           TW-7]
          Length = 889

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A        S    +   + + H+I +P+  I  +L+LL E  + D+    ++ +  S 
Sbjct: 517 LAHAKELAEQSSKTKSEFLANMSHEIRTPMNGILGTLQLLQEQPMNDKSTDYLKKALYST 576

Query: 61  IIRLKFMRLAFGYT----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 +     ++            V  L  L    +      A +K + + +      
Sbjct: 577 RSLTTIINDILDFSKIEAGKLSLEQKVFELDELIHHLESDLLVPAQEKNIYLKFKSTIHH 636

Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++ LN+   A     +GG           +    +   G          
Sbjct: 637 KYWRGDAVRIRQVFLNIIYNAIKFTHKGGVTVEFKLTDDEQVCAIVSDTGIGIPKN-VVN 695

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +       L +     +     +         L 
Sbjct: 696 RLFERFEQAESSTTREYGGTGLGLPITKSLINLMDGDIKVTSEEGVGSQFYVYLP 750


>gi|49476786|ref|YP_034653.1| sensor histidine kinase; sporulation kinase [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49328342|gb|AAT58988.1| sensor histidine kinase; possible sporulation kinase [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 677

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 451 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 510

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 511 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 570

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 571 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 629

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 630 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 666


>gi|52144913|ref|YP_081916.1| sensor histidine kinase (sporulation kinase), C-terminal region
           [Bacillus cereus E33L]
 gi|51978382|gb|AAU19932.1| sensor histidine kinase (sporulation kinase), C-terminal region
           [Bacillus cereus E33L]
          Length = 677

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 451 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 510

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 511 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 570

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 571 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 629

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 630 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 666


>gi|323701747|ref|ZP_08113418.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533283|gb|EGB23151.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum nigrificans DSM 574]
          Length = 404

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 76/228 (33%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           + +        M ++  L +   H+I +P+ ++   +++L             I   + +
Sbjct: 168 LQEKQFTQREKMVMIGELAAGTAHEIRNPLTSVRGLIQVLGNRFSQGDPAREHISMMLAE 227

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID- 110
           + +++ +   + L   R +   + +    I    +  V  + +     +  ++       
Sbjct: 228 IDQINYIIKELLLLARRTSPNLSFASLPAILDHVLLLVEGECLGRGISIIKNYDNSLPLA 287

Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +  ++ L+L   A  ++P GG++T+  S   S N  + + K  G          +
Sbjct: 288 VLDEDQMKQVFLHLVTNAIHAMPTGGELTVAASYISSDNVIVVTFKDTGLGIPEKNLT-R 346

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +  +   +       +   +  +L  +         +  L 
Sbjct: 347 IFHPFFTTRPEGTGLGLPVSFQIIDNHGGKLSVQSTVGQGSTFTVTLP 394


>gi|298244001|ref|ZP_06967808.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297557055|gb|EFH90919.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 571

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 61/234 (26%), Gaps = 23/234 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSS 57
           +I       +  +   S + H++ +PI  I      L   G       L          +
Sbjct: 328 DITLEREQEEQRSTFISVVSHELQTPIAIIKGYASTLARAGSRLAPQALQTRLVAIEEEA 387

Query: 58  MSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 +  +           ++          +  +    ++    +     +      
Sbjct: 388 DRLNKLVGNLLYASRIQANGLQMEIAPLDLEPLIETVVRRLKIRYADLQATLEISPDLPS 447

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              D      ++L NL   A        K+TIS + + NE I S++  G      ++   
Sbjct: 448 VMADRE-RIEEVLQNLLDNAIKYSSGQLKITISARATSNEVIVSVRDTGMGISLRDQEQI 506

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +     +  Y    +   +  R+  E         S  L +
Sbjct: 507 FKRFRRIGNPLAQSTPGTGLGLYICRAIVEAHGGRIWVESTLRQGSTFSFSLPR 560


>gi|229160973|ref|ZP_04288962.1| hypothetical protein bcere0009_17620 [Bacillus cereus R309803]
 gi|228622541|gb|EEK79378.1| hypothetical protein bcere0009_17620 [Bacillus cereus R309803]
          Length = 346

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 112 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 168

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  DK +++    EK+
Sbjct: 169 TTRLSKLSQNLLKLTLLESEEYTPEKVTYRLDQQLKQIVLNSEPLWADKEIELDLDLEKV 228

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +Q+ +      +  +G      +    
Sbjct: 229 HITADQESMSQVWINLIHNSIKFTPSGGTITIQLQEHEKFVEIRIHDSGIGISEEQKQHI 288

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  + +       + K
Sbjct: 289 FERFYKADSSRNRTYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIPK 342


>gi|218887079|ref|YP_002436400.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758033|gb|ACL08932.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 566

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 67/232 (28%), Gaps = 27/232 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM------------ 50
           + S  + AL  L + + H++ +P+  I  +     +LL E                    
Sbjct: 321 MQSSKMAALGKLAAGVAHEVNNPLMLIRENAGWIRDLLSEEDAARMGHHAEIEEAAVKIE 380

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
           Q +  +       L F R        V   +        +  + +     +   +  E  
Sbjct: 381 QHVDRAKGITHRMLGFGRRMEPMQEDVPLNVLTEQTVKFLESEALHRSITIHKDFDAELP 440

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKF 164
            ++ + A++   +  V   ++   G+       +       E   ++   G     PE  
Sbjct: 441 AITTDTAQVQQVILNVLDNAIDAVGQGGSITVRTGATEGGQEVFVAVTDTGGGI-APEVL 499

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I D    +    +   +       +  +   R++ E    +    +  L 
Sbjct: 500 EHIFDPFYTTKKAGEGTGLGLAICYSIMEKLGGRIVAESTPGNGATFTVYLP 551


>gi|220933231|ref|YP_002512130.1| histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994541|gb|ACL71143.1| histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 655

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 18/229 (7%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----L 55
           +     L S  L ++  + + I H++ +P+  I +  +L+     +D+            
Sbjct: 420 QAQRMLLQSAKLASIGEMAAGIGHELNNPLNNILSLAKLIRRELPDDDPRAREDLRALTD 479

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEK 108
            +  A   +  +             I +                   V  R++V      
Sbjct: 480 EAERATRIVNGILNFARQVPPHYVPIDVRPWLEETLILVNQSARDQQVSVRLEVEEGLVM 539

Query: 109 IDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +  ++L+NL + A  +       V ++  D   E    +   G     PE   ++
Sbjct: 540 EGDVNQLRQVLINLLLNAIQASQAGDEVVIMARHDPDGEVNVCVCDQGCGI-KPEVQDRM 598

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +        +     + +  ++   L     +   V  +  L 
Sbjct: 599 FDPFFTTKPVGKGSGLGLSISLGIVEQHGGNLDIRPNERGGVTATVRLP 647


>gi|313676805|ref|YP_004054801.1| histidine kinase [Marivirga tractuosa DSM 4126]
 gi|312943503|gb|ADR22693.1| histidine kinase [Marivirga tractuosa DSM 4126]
          Length = 364

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 68/230 (29%), Gaps = 18/230 (7%)

Query: 2   AKNICFN----LSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----M 50
            +N          +  L     + + I H++ +P+ +I    +L+ +     +      +
Sbjct: 131 RQNEELMERKFRHNDRLAILGQISAGIAHELNTPLTSILGFAQLIQKSDKNIQDDIEKII 190

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106
                +       + F         ++     + D  ++++               S   
Sbjct: 191 NSTLHAREIVKNLMFFACEMPQQIRAISINSLMEDSLKLLKPSFQNAEVSLNLQLSSEDI 250

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  +++ NL + A  + P GG + + ++   N+       NG      +   +
Sbjct: 251 VVKLDPIQITQVIFNLVINAIQATPPGGYIIVKLRKEDNQLKMYFIDNGKGM-SSQINDR 309

Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +  +     +    V  +  ++   +     ++        L 
Sbjct: 310 IFEPFFTTKPEGEGSGLGLSVVHGIIKKHNGTINFSSEEEGGTTFIVSLP 359


>gi|302343587|ref|YP_003808116.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640200|gb|ADK85522.1| PAS/PAC sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 510

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 71/231 (30%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50
           +++     + S  L  L  L + + H++ +P+  I    EL+ E              ++
Sbjct: 257 LSEARLQVVQSDKLARLGQLAAGVAHELNNPLTGITIYAELVKESLPPDSPLQDDMTNIV 316

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109
           +  +         L + R        +D    + D   +  +D + +   V   +    +
Sbjct: 317 EDAQRCRDIVKDLLDYSRQTTVRVEDLDLNQVIEDAFNLIRDDALFLHVDVVRDYHKGPL 376

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPEKFT 165
            L  +     ++ +NL   A  ++   G++T+          +  +   G     PE   
Sbjct: 377 TLEGDEKLLRQVFINLLSNAIDAMAGRGRLTVRTGLDGQGMRWAEISDTGPGI-APEHLD 435

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +        +    V  +       +  +    +       L 
Sbjct: 436 RIFDPFFTTKAPGKGTGLGLSVVYGVVSRAGGAVEVKNTGPNGTTFKVSLP 486


>gi|237720759|ref|ZP_04551240.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
 gi|229449594|gb|EEO55385.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
          Length = 254

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 16  ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 73

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  +        +  +   + V        K V    
Sbjct: 74  NSEHLVRLIDDILDLSKIESNTIKFTYSNYSLKSIMKDIEKEQVVKNVPEIEIKAVLPDD 133

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +    +++ N    A             +   ++ +     ++  G       
Sbjct: 134 DIYITTDATRLKQVICNFINNARKFTEEGYIHFGFMVNPENDDSVCLFVEDTGEGIPQEC 193

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +      +       +    +  +            +  L 
Sbjct: 194 QKEIFDRFYKVNTFKQGTGLGLSICKTIVEHLQGSISVVSEVGRGSRFTVTLP 246


>gi|217963398|ref|YP_002349076.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|217332668|gb|ACK38462.1| histidine kinase [Listeria monocytogenes HCC23]
 gi|307572027|emb|CAR85206.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE      + +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSR 113
           +                 VD    +    + I +                          
Sbjct: 423 ILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +I++NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|251799423|ref|YP_003014154.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247547049|gb|ACT04068.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 67/234 (28%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M+K +   +          S + H+I SP+ +I     +L E  +  E  +       + 
Sbjct: 227 MSKELE-RVDQTRQ--QFVSNVSHEIQSPLTSIQGFAAVLREQELPSEERKHYADIIEAE 283

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
              L  +        S++      + +              + W  E+ DL  +      
Sbjct: 284 SRHLSILSKQLLLLSSLEQGEEALNKKHFSLYKHIRQAVQVLQWQLEEKDLLLKLSVPDS 343

Query: 116 ----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
                      ++ +NL   A   +P G  + +  + + ++ +  +   G          
Sbjct: 344 IAIYGDEVLLQQVWMNLLGNAINYIPPGRSIEVLAEKTLSDIVIVVSDTGEGIPPEHIPF 403

Query: 164 -FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +           +    V  +   +  R+  E        ++  L 
Sbjct: 404 LFDRFYRVDRARERTSGRTGLGLAIVKKIVQLHGGRIEVESSPGAGTRITVSLP 457


>gi|153806751|ref|ZP_01959419.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
 gi|149131428|gb|EDM22634.1| hypothetical protein BACCAC_01022 [Bacteroides caccae ATCC 43185]
          Length = 902

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 55/230 (23%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  +      S  L +   + + H+I +P+ AI    +L+ E   E+E      +   + 
Sbjct: 499 LQSSKEKAEMSDKLKSAFLANMSHEIRTPLNAIVGFSQLIAESNDEEERKTYYGIVESNN 558

Query: 61  IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                               +    G T   +    + D                   + 
Sbjct: 559 GRLLELINEILDLSKIESGIIEFTIGPTSLHNLCREVHDAHIFRMPVGVSLVHEPSDESL 618

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ NL   A      G       +       F +   G     PEK  +
Sbjct: 619 MIETDKNRVFQVISNLIGNAAKFTKEGSISYGYKRVGDQIV-FHVTDTGTGI-EPEKVGR 676

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +      +      +       +      ++            +  L 
Sbjct: 677 VFERFAKLNNHAQGTGLGLSICKSIVERLGGKITVNSEFGVGTTFNFTLP 726


>gi|121535650|ref|ZP_01667455.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121305754|gb|EAX46691.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 425

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----- 54
           +A+     + +  +      +   H++ +P+  I ++ EL+          + IR     
Sbjct: 183 LARRAMVPIQAAWEKQQQFVADASHELRTPLAVIKSNAELMLRHPDHTIEDESIRVTNIV 242

Query: 55  LSSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                    +               L  G     + +  + +  + +         V V 
Sbjct: 243 REVRRMTRLVADLLTLARADANQSELQLGAVSLSELVDAVSEQFKPLAQLEGHTLTVAVY 302

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E +       ++L+ L   A    P  G + I+     +  + +++ +G      + 
Sbjct: 303 EQLELVGDRERLYQLLVILLDNAVKYTPPPGHILITGVRQGSHILLTVEDSGQGIPPEDL 362

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G+           +       +  ++  ++  E         S LL 
Sbjct: 363 PRVFDRFYRGDKARSREKGGTGLGLAIAKWIVEKHGGKIWVESKVGVGTKFSVLLP 418


>gi|78186231|ref|YP_374274.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166133|gb|ABB23231.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 689

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 20/230 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
           M + +        L A+  L S + H+I +P+ AI    + L       ++      +++
Sbjct: 455 MQERLE---RQGKLTAMGELASGVAHEIRNPLNAIGLIAQRLDIEFTPKEDEAEFRHLLR 511

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSW 104
            +          ++                 L                   V   +  + 
Sbjct: 512 TVVSEVHRLNAIIQRFLRFARPPALEVVPTDLAAFAADYRAVLEGEASDKGVAFSLSGAP 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +    +  ++LLN+   A  +  RGG V++SV       +  +   G     P++ 
Sbjct: 572 GTVALIDRDQMQQVLLNIVRNAVEATSRGGAVSVSVSADAGSAVIEVADTGKG-TTPDER 630

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +    +  D   +       +   +   +          V   L+ 
Sbjct: 631 HRMFNLYFTTKDDGTGMGLSIASQIVQSHGGTIEVNDRPGGGTVFRILVP 680


>gi|148543263|ref|YP_001270633.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri DSM 20016]
 gi|184152674|ref|YP_001841015.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|194467422|ref|ZP_03073409.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           reuteri 100-23]
 gi|148530297|gb|ABQ82296.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri DSM 20016]
 gi|183224018|dbj|BAG24535.1| two-component sensor histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|194454458|gb|EDX43355.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           reuteri 100-23]
          Length = 621

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 28/226 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+ ++ + +E L      +  I  + +++++  +   I  +  +    
Sbjct: 380 QFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPQFLKVVQDETDRMIRMINDLLSLS 439

Query: 68  --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                          +   +   +D    +   E+  +      +R            + 
Sbjct: 440 RMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTD 499

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +++ N+   A    P GG +T  + ++ N  I S+   G      +           
Sbjct: 500 KFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRV 559

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + ++         L 
Sbjct: 560 DKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605


>gi|228952968|ref|ZP_04115030.1| hypothetical protein bthur0006_23580 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228806689|gb|EEM53246.1| hypothetical protein bthur0006_23580 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 419

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 249

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 250 LNRAQEIIDDYLTFAKPAPEKLDQISIKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 413


>gi|228988850|ref|ZP_04148904.1| hypothetical protein bthur0001_54850 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228770878|gb|EEM19389.1| hypothetical protein bthur0001_54850 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 801

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNDISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLVSC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIRYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|196031997|ref|ZP_03099411.1| sporulation kinase [Bacillus cereus W]
 gi|228946726|ref|ZP_04109033.1| hypothetical protein bthur0007_28640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|195994748|gb|EDX58702.1| sporulation kinase [Bacillus cereus W]
 gi|228812943|gb|EEM59257.1| hypothetical protein bthur0007_28640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 801

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLP 795


>gi|49478009|ref|YP_037213.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|218904259|ref|YP_002452093.1| sporulation kinase [Bacillus cereus AH820]
 gi|228931049|ref|ZP_04094003.1| hypothetical protein bthur0010_57030 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|49329565|gb|AAT60211.1| sensory transduction histidine kinase; sporulation kinase A
           [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|218537874|gb|ACK90272.1| sporulation kinase [Bacillus cereus AH820]
 gi|228828612|gb|EEM74294.1| hypothetical protein bthur0010_57030 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 801

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEVNKGTTVEVTLP 795


>gi|332290969|ref|YP_004429578.1| histidine kinase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169055|gb|AEE18310.1| histidine kinase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 358

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 15/227 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
           K        + ++  + + I H++ +P+  I    ELL E            D++++   
Sbjct: 132 KRQMERADRLGILGEITAGIAHELNTPLANILGFAELLKEDIASNESATEDLDKIIKNAI 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110
            S       + F         +++ +  +     ++E      K   +            
Sbjct: 192 FSREVVKKLMFFACEMPQEMQALNMVPSIKGAVALLEASFKKAKVNYLIDIDDQELWLKA 251

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            + +  +I+ NL + A    P  G VTI+   S    I  +K  G      E   ++   
Sbjct: 252 DTIQITQIIFNLIINAIYFSPENGLVTITASQSDRSIILKIKDEGVGL-SSEVLDKVFQP 310

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    D   +    V  +   +K  +      D     + +L +
Sbjct: 311 FFTTKPTGDGSGLGLSVVHGIVASHKGTITARNNKDKGATFTVMLPR 357


>gi|332074557|gb|EGI85031.1| sensory box protein [Streptococcus pneumoniae GA17545]
          Length = 449

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVGHELRTPLTSVKSYLEALDEGALCETVAPDFIKVSLDETNRMMRMVTDLLHLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNATSHLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIWMEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           ++ N+   A    P GGK+T+ ++ ++++ I S+  +G      +   +I D        
Sbjct: 331 VVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLP-RIFDRFYRVDRA 389

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  ++K  +  +         + +L 
Sbjct: 390 RSRAQGGTGLGLSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLP 432


>gi|310641769|ref|YP_003946527.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309246719|gb|ADO56286.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 374

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA N+       +L     S + H+I SP+ +I    + L +  ++ E          + 
Sbjct: 125 MAANLKVM---EELREAFISNVSHEIGSPLTSIIGFAKALKDDNLDREQRDRYLTIIETE 181

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI-----------EQVIEDFIAVDKRVQVSWTGEKI 109
            IRL  +         +DS                    +  +     K++ +      +
Sbjct: 182 CIRLSKLSDNLMKLAVLDSERHPFHPSSYRLNKQLISLILACEPQWEAKQIDMIVDTHNV 241

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            ++ +     ++ +NL   A    P+GG +++S+  + N+ +  +   G      +   +
Sbjct: 242 QVNADEDLMGQVWVNLLHNAIKFTPQGGSISVSLSSNGNQAVVCITDTGPGINEQD-QQR 300

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +           T     +       +   +   +            + LL 
Sbjct: 301 IFERFYKADKSRTRTAGGSGLGLSIAHKITEMHSGSISVSSKVGEGTAFTVLLP 354


>gi|301161869|emb|CBW21413.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 929

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK     +  +    L  + + H+I +P+ AI     LL   +++    E +++++ ++ 
Sbjct: 694 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 751

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                  G  D  I   DI +  +  +     +          
Sbjct: 752 LLLQLISDILDLSKIEAGTFEFTYGETDVNILCEDIVRSSQIKVPQGVELVFDPHPSDCT 811

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G  + +  +  +    F +   G      +     
Sbjct: 812 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 870

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S I    +       +  +    +  +  +         + 
Sbjct: 871 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEEGKGSRFWFTIP 918


>gi|160882322|ref|ZP_02063325.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
 gi|156112236|gb|EDO13981.1| hypothetical protein BACOVA_00270 [Bacteroides ovatus ATCC 8483]
          Length = 810

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 63/227 (27%), Gaps = 19/227 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     E  + I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107
           +                        +VD      +I + +   ++    +          
Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCTEIIKSMSMKVSKGVELIFEEPLLECY 697

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ N    A     +G       Q S  +  F ++  G      EK   I
Sbjct: 698 LYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGI-PEEKQKSI 756

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +  V   + +    +       +  +    +  +  +         
Sbjct: 757 FERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGIGSCFWFT 803


>gi|150390836|ref|YP_001320885.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950698|gb|ABR49226.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 586

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 67/230 (29%), Gaps = 26/230 (11%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAII 62
            L ++   +   + + H++ +P+  I   +E L      +       + +I L +     
Sbjct: 358 KLEALK--SEFAANVSHELRTPLTLISGFVETLQSWESLDEKDRKMALNIIELETERLKR 415

Query: 63  RLKFMRLAFGYTGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            +  +                          +  +   I     +  +  +      +  
Sbjct: 416 LINDILRLSEIENIQRLAKYEVLDIEGLINEVQYMMSGIAAKKNIQLKTHIEKNVHTLFG 475

Query: 112 SRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           + +   ++L+NL   A    P GG++ +S ++ +NE    +  NG      E   +I + 
Sbjct: 476 NSDWFKQMLVNLIENAIKYTPTGGQIKVSAKNEQNEISIMVMDNGIGI-PKEDCERIFER 534

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    +    V  +  E    +      +        L 
Sbjct: 535 FYRVDKARSRDVGGTGLGLTIVKHIVTEFGGTIEVSSKLNQGSHFKVRLP 584


>gi|73748079|ref|YP_307318.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659795|emb|CAI82402.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 1062

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 74/229 (32%), Gaps = 17/229 (7%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            M + +      M  V  L S + H+I +P+  I    ELL    +E+ + + I+     A
Sbjct: 818  MEQQLIMT-DRMASVGELASGLAHEINNPLTGIVGFSELLLMNELEESIKEDIQTIHREA 876

Query: 61   II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLS 112
            +         L F R       + D  + +  + ++ +    ++    +     +   + 
Sbjct: 877  LRAAEIVRNLLTFARQHTPTREAGDINLSVHKVLELRKHDHRINNIRCLTDLDPDLPRVM 936

Query: 113  RERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             +  +I   L  +   +     L    ++TI         I S+  NG     PE   +I
Sbjct: 937  LDFFQIQQVLINIIINAEFFLRLKDHPQITIKTSQHNGYVIISISDNGPGI-SPENMKRI 995

Query: 168  VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D    +        +       +  E+  ++  E    +       L 
Sbjct: 996  FDPFFTTKEVGKGTGLGLSICHGIIEEHHGKISVESTLGNGATFRIELP 1044


>gi|304440637|ref|ZP_07400521.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370824|gb|EFM24446.1| phosphate regulon sensor histidine kinase protein PhoR
           [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 545

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 68/226 (30%), Gaps = 22/226 (9%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLK 65
             L   +      S + H++ +P+  I    ELL    +E+E + +   +    +    +
Sbjct: 321 LKLKREE----FTSNVTHELKTPLTIISGFAELLKSGNVEEEKIKEFGGIIYKQSTNLQR 376

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI------- 118
            +      +    +   + +   + E    V   + +    + ++L ++  ++       
Sbjct: 377 LIDDLLKISKLEANDAVIIEELSLDELGDEVCDDLAIEIKNKNLNLVKDFDRVKAKVNGE 436

Query: 119 -----LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDG 170
                ++NL   A      GG++   +       +  +  NG           F +    
Sbjct: 437 MIKEAMMNLLTNAIKYNRDGGEIEFKIAKEDGFALVQISDNGIGIEEELLDRIFERFYVV 496

Query: 171 NVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I S  +    V  +   +  R+            +  L 
Sbjct: 497 DNSRSKKISSTGLGLSIVKHIVEAHGGRIEVTSEIGKGSTFTIYLP 542


>gi|227364326|ref|ZP_03848419.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri MM2-3]
 gi|325683525|ref|ZP_08163041.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A]
 gi|227070639|gb|EEI08969.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           reuteri MM2-3]
 gi|324977875|gb|EGC14826.1| sensor histidine kinase VicK [Lactobacillus reuteri MM4-1A]
          Length = 598

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 28/226 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+ ++ + +E L      +  I  + +++++  +   I  +  +    
Sbjct: 357 QFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPQFLKVVQDETDRMIRMINDLLSLS 416

Query: 68  --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                          +   +   +D    +   E+  +      +R            + 
Sbjct: 417 RMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTD 476

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +++ N+   A    P GG +T  + ++ N  I S+   G      +           
Sbjct: 477 KFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRV 536

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + ++         L 
Sbjct: 537 DKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582


>gi|225387786|ref|ZP_03757550.1| hypothetical protein CLOSTASPAR_01556 [Clostridium asparagiforme
           DSM 15981]
 gi|225046120|gb|EEG56366.1| hypothetical protein CLOSTASPAR_01556 [Clostridium asparagiforme
           DSM 15981]
          Length = 498

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +N    +        L S I HD+ +PI AI   +E + +      E +     +  +
Sbjct: 253 LRENAEEKVQYDKESKELISNISHDLKTPITAIKGYVEGIQDGVASSPERLDKYIRTIYN 312

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102
               +  +     +   +D+        ++       D                     V
Sbjct: 313 KANDMDRLIDELTFYSKIDTNKIPYTFTKINVAQYFKDCIEEVGLDMEARGIELGYFNYV 372

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I  + +  +++ N+   +   L +    + I ++D  +     ++ NG      
Sbjct: 373 DEDVVVIADAEQMKRVINNIISNSIKYLDKKKGIINIRIKDVGDFIQVEIEDNGKGIAAK 432

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  R+     +     +  +L K
Sbjct: 433 DLPNIFDRFYRTDSSRNSSQGGSGIGLSIVRKIIEDHGGRIWATSKEGIGTEIHFVLRK 491


>gi|156741047|ref|YP_001431176.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232375|gb|ABU57158.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 718

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 54/241 (22%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61
            ++     +  L +   S + H++ +P+ +I    ELL        E  + ++     A 
Sbjct: 470 SDVTREREADRLKSEFLSIVSHELRTPLTSIMGYTELLLARDFTPGEQREFVKTVYNEAN 529

Query: 62  IRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              + +                          +  L                    +   
Sbjct: 530 HLYQIVEDLLGVTRLEAGNVRLDRWAVSLRQIISDLTAHLSNQISGKHTMLIDIPPYLPP 589

Query: 108 KIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSLKINGNLA 158
                 +  ++L+NL   A    P                         + ++   G   
Sbjct: 590 VYADRDKVRQVLVNLITNAVKYSPNGGEIRLTVTEHADLPPDHPKGQFVLVAISDQGIGI 649

Query: 159 RFPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    + +           I    +       L   +  R+  E   +     S  L
Sbjct: 650 APEDLPRIWERFYRVDNGNTRRIGGTGLGLSIAKALVELHGGRIWAESKLNRGSTFSFTL 709

Query: 214 E 214
            
Sbjct: 710 P 710


>gi|86137001|ref|ZP_01055579.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
 gi|85826325|gb|EAQ46522.1| sensory box sensor histidine kinase/response regulator [Roseobacter
           sp. MED193]
          Length = 753

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 59/246 (23%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           AK     L    L A           + + H+I +P+  +    +LL+E  ++ +     
Sbjct: 356 AKQNAQQLEEARLAAEEGGRAKSDFLATMSHEIRTPMNGVIGMAQLLEETDLDGDQRLYT 415

Query: 54  RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97
                SA                          + D    L +  Q++           +
Sbjct: 416 NTILSSAKTLLALINDILDLSKLDAGQISLNPCNFDLHQCLEETIQLLLTQAEAKGLTLE 475

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKI 153
               V      +       +IL NL   A     +G           QD       ++  
Sbjct: 476 VERDVDLPRYLVGDDHRLRQILNNLVGNAIKFTEKGRVKVSVEMEPAQDGGVLLNCAIID 535

Query: 154 NGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G           F +    +  +        +       LA     R+           
Sbjct: 536 TGIGIPKDMLTGIFERFSQADAAISRRFGGSGLGLAISRRLAEAMGGRITVTSEIGSGSC 595

Query: 209 LSALLE 214
            + +L 
Sbjct: 596 FTLVLP 601


>gi|254853972|ref|ZP_05243320.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300765001|ref|ZP_07074989.1| histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|258607361|gb|EEW19969.1| histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300514301|gb|EFK41360.1| histidine kinase [Listeria monocytogenes FSL N1-017]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE      + +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSR 113
           +                 VD    +    + I +                          
Sbjct: 423 ILALSRIEQNPVAENVELVDIDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +I++NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQIIINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|295697226|ref|YP_003590464.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
 gi|295412828|gb|ADG07320.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
          Length = 444

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 57/216 (26%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
             +   H + +P+  I  + EL    D+     + ++     +      ++ +       
Sbjct: 221 FTADASHQLRTPLTVIRTTAELALGTDDPEEWRDALETTVAETHHMSRMVESLATLARMD 280

Query: 75  GSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                         D +  +    + +     V      +     +       ++L  L 
Sbjct: 281 YEEGAVKRSPFAVRDLVEEVAAHIEPLAGEKGVAFHAPEAGEDRLVGDQHRIWQLLTVLL 340

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A    P GG V  S + +  E +F+++  G      E               +  I  
Sbjct: 341 ENAIKYTPEGGHVYFSYRRNGPEAVFTVRDTGIGIAREELPHIFDRFYRGSVVQKERIPG 400

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A  +   +  +         +  L 
Sbjct: 401 SGLGLSIAKEIAELHGGTIHVDSEVGVGTTFTVSLP 436


>gi|158523280|ref|YP_001531150.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158512106|gb|ABW69073.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 565

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           +A  +    ++  L +   + + H++ +P+ +I     +L +         + + M +++
Sbjct: 323 LADAMKKARAADHLKSAFLATMSHELRTPLNSIIGFTGMLLQELPGPLNEEQKKQMGMVQ 382

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--- 103
            S+   +  +  +                + D    +     ++      ++        
Sbjct: 383 TSARHLLALINDVLDISKIEAGQLSLAPVTFDLRSSIEKTAALVAPLAEKNEIDLKVEIG 442

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              G+     R   +++LNL   A      G        D+    I  +   G   +  +
Sbjct: 443 KDVGDMTTDQRRLEQVVLNLLNNAVKFTETGSVSINCRTDTGQYVIS-VADTGIGIQPED 501

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +               +   +       L       +  +         +  L K
Sbjct: 502 VAE-LFQPFHQVDTGLSRRHEGTGLGLSISKRLVAMMGGAIEVQSEPGKGSTFTVRLPK 559


>gi|116625742|ref|YP_827898.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116228904|gb|ABJ87613.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 587

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +     +    +  +  L   I HD+ +P+ AI+   E+L +  +    ++ +  +   
Sbjct: 350 RQAREDLIRQERISTIGRLSGSIVHDLRNPLAAIYGGAEMLVDTELPPLHVKRLAGNIYR 409

Query: 60  AIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           A  +++ +                     +      D      +   +   +++    E 
Sbjct: 410 ASRKIQELLQDLLNVSRGKQSAPENCRLREVASAACDSLATAAEQQGIAISLEIPSEIEV 469

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++  NL   A  ++  GG+V I+ +      +  ++  G       +     
Sbjct: 470 PLERSRVERVFANLVGNALEAMQSGGEVHITAEMRDGAAVIHVEDTGPGIAPEIRTKLFQ 529

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +          ++   +  E         S  L 
Sbjct: 530 PFVSAGKRNGLGLGLALSRQTVIDHGGDMWVESHPGRGARFSFRLP 575


>gi|313636361|gb|EFS02143.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           S4-171]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE      + +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEALLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113
           +               G+VD    +    + I +             +            
Sbjct: 423 ILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVIIETNRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + ++E I  +  NG      +   ++ +    
Sbjct: 483 QLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|313631990|gb|EFR99108.1| two-component sensor histidine kinase [Listeria seeligeri FSL
           N1-067]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE      + +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEALLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113
           +               G+VD    +    + I +             +            
Sbjct: 423 ILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTIPPVIIETNRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + ++E I  +  NG      +   ++ +    
Sbjct: 483 QLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|228921324|ref|ZP_04084649.1| hypothetical protein bthur0011_23280 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838338|gb|EEM83654.1| hypothetical protein bthur0011_23280 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 360

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|220906024|ref|YP_002481335.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219862635|gb|ACL42974.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 816

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 66/233 (28%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           +A+ +       +L +   S   H+  +P+  I +S ELL           + + ++ I 
Sbjct: 574 LARTLEKEKQLNELKSRFVSMTSHEFRTPLTTILSSTELLQSHSHKWGEPRDLKHLERIH 633

Query: 55  LSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +       L  +         RL F              +E +            ++  
Sbjct: 634 TAVERMTELLNGVLVLSKAEAGRLEFHPQSLNLEQFCRDLVEDLQSSAPEHQLLFSLTGN 693

Query: 106 GEKIDLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
             ++++  +  + +L NL   A    PRGG V   V  +     F ++  G        P
Sbjct: 694 CTQVEMDEKLLQHILPNLLSNAIKYSPRGGSVRFEVTCTSTSVCFQIQDQGIGIPAADLP 753

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F           I    +    V      +   +              +L 
Sbjct: 754 HLFESFHRAKNVGNISGTGLGLAIVKKSVDLHGGTISVTSEVGIGTTFIVILP 806


>gi|270308463|ref|YP_003330521.1| sensor histidine kinase [Dehalococcoides sp. VS]
 gi|270154355|gb|ACZ62193.1| sensor histidine kinase [Dehalococcoides sp. VS]
          Length = 395

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K++     S  L ++  L + + H+I SP+ +I    E L      +E  + I     
Sbjct: 131 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 187

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107
            A+           F R              +    ++ E  + V   V           
Sbjct: 188 EALRAAKVVDNLRTFARSYEQEKKLCGLNDVIRKSVELREYELVVQNIVVELELAENLPS 247

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164
            +    +  ++L+N+ + A  ++ +           QD  N     ++ NG     PE  
Sbjct: 248 TLMDFYKIQQVLINMILNAEQAMYQAHGRGRLLIKTQDMGNYIRMIIEDNGPGI-APEIA 306

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +  D     +       +  E+  ++  E            L 
Sbjct: 307 ERVFDPFFTTKEDSRGTGLGLSVCYGIIMEHDGKVQLESKLGQGTRFIIDLP 358


>gi|197118087|ref|YP_002138514.1| PAS/PAC domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197087447|gb|ACH38718.1| sensor histidine kinase response regulator, PAS and PAC
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 571

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + +       +  + A+  L + I HD  + + +I    ++    + E G     M+ + 
Sbjct: 181 LRRTEKELRHAQKMEAIGTLAAGIAHDFNNILTSILGFTDMVLHKIPEEGTGRREMEQVF 240

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
           +++  A   ++ +      +      + L DI +     +       V    E       
Sbjct: 241 VAAQRAADLVRQILSFSRRSDQERKPVHLSDIVEEACKLLRSSLPATVEIGTECFASEDE 300

Query: 111 -----LSRERAKILLNLFMVAHASLPRGGKVTISV----------------QDSKNENIF 149
                   +  ++L+NL   A  ++   G +                      S++    
Sbjct: 301 DKVLADPIQLHQVLMNLCTNAAHAMQPEGGMLTITLTAVAAGSPGLRSLPLFLSRDYIRV 360

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           +++  G          +I D    +    +   +    V  +   +   +          
Sbjct: 361 AVRDTGRGIEPS-VLERIFDPYFTTKPVGEGTGLGLAVVQGIVKNHGGAITVHSEPGKGT 419

Query: 208 VLSALLE 214
                L 
Sbjct: 420 CFEVFLP 426


>gi|322411349|gb|EFY02257.1| sensor histidine kinase [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 450

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 70/224 (31%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLK--- 65
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L    
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      M     +  S+ +   L   +      +    R     +      + + 
Sbjct: 271 IDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|301163451|emb|CBW23002.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 812

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  L +   + I H+I +P+ AI    +LL   D+   ++E  + I+ ++
Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
              +     +                 V        + Q + + +     +Q+       
Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPEGVELQIDEDSPLD 694

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    +++ N    A     RG        D++ +    ++  G      E   
Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHRGTITVGYRIDTRQQLEMFVEDTGIGISI-ENQE 753

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  +  +S +    +       +  +    +               L 
Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804


>gi|294673424|ref|YP_003574040.1| sensor histidine kinase/response regulator [Prevotella ruminicola
           23]
 gi|294473696|gb|ADE83085.1| sensor histidine kinase/response regulator [Prevotella ruminicola
           23]
          Length = 409

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       +  + +L  + + H+I +P+ AI     +L E   +D+ M+   +   +  
Sbjct: 30  EEKAQKAEKASKMKSLFLANMSHEIRTPLNAIEGFSRVLVETDSQDDRMKFFEIIESNNN 89

Query: 62  IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +                      S D       I+ + +       ++        + 
Sbjct: 90  RLMSLVNEILDLSRVEAGEITMKKSSTDLNQLCDSIKNLFKFRCPETVKLSWKKPNMAVT 149

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQ 166
            + +     ++  NL   A      G         D  +   F ++  G      +    
Sbjct: 150 FNTDANRITQVFSNLISNALKHTSAGSITYGYRMLDEGSNIEFFVQDTGTGIAPEDLQHI 209

Query: 167 IVD---GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + E+  + + +      ++  +   ++  E       +   +L 
Sbjct: 210 FNTYVSRDAETNNNGYGLGLALCKIIVEKLGGKIYVESKLGEGSLFHFVLP 260


>gi|294497123|ref|YP_003560823.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294347060|gb|ADE67389.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 601

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 67/229 (29%), Gaps = 17/229 (7%)

Query: 2   AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            + +   +  S  L     + +   H+I +P+  IH  + L    L +   +   + L+ 
Sbjct: 372 TEELEKRMHQSEKLALVGEVAAGAAHEIRNPLAVIHGFISLMNQSLSDEEKKRFYLPLLM 431

Query: 55  LSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                    ++ M    +        V     + ++  +I       ++ ++ +  +   
Sbjct: 432 KELERINYIIEEMLLLSKPGAPVMKKVSMQDIINELLPLITHSSKFTEKDKLIFDVKLQP 491

Query: 111 LS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  ++  ++L NL   +  ++   G +TI  Q   +     ++ NG          
Sbjct: 492 HILKVDEKQIKQVLHNLIRNSMEAMDGEGVITIYSQVHDDNYCLYIEDNGKGIPLH-MQQ 550

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      S      +       +   +  ++          V      
Sbjct: 551 SLYQPFSTSKDSGTGLGLPIAQRILESHGGQIKLLSTSSRGTVFVIKFP 599


>gi|256376337|ref|YP_003099997.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920640|gb|ACU36151.1| GAF sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 399

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 63/215 (29%), Gaps = 19/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR-------- 63
             + + H++ +P+ ++H SLELL      +       ++++   ++   +          
Sbjct: 175 FTALVSHELRTPLTSVHGSLELLASGRFGEMQAQASRLVEIAVKNTDRLVRLANDVLDLS 234

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKILLN 121
                        V+    + +    +E          V+          +    +++ N
Sbjct: 235 RVQSGQLRLRPAPVELADVVENAVIAVEGTAERCHVPLVTRKDPVTVRGDADRLVQVVTN 294

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSH 179
           L   A    P G  V +      +     ++ +G      E   +I +  V+  +     
Sbjct: 295 LLANAVKVSPPGQPVEVGCSVEGSVARVYVRDHGMGITDDEVK-RIFEPFVQLGAKSGGA 353

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       +   +   +  E         + +L 
Sbjct: 354 GLGLAITRGIVESHGGTIAVESEAGIGSTFTVILP 388


>gi|300769971|ref|ZP_07079850.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762447|gb|EFK59264.1| sensor histidine kinase/respose regulator [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1138

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 75/241 (31%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            KNI   ++ ++  +       + + H++ +P+ +I    +LL +    +     I+ ++
Sbjct: 467 RKNITDKINEVEQASKYKSEFMANMSHELRTPLNSILILAKLLKDNKHHNLNTDQIKYAT 526

Query: 58  ----------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------K 98
                           L   ++  G    V+  I +  + + IE    +           
Sbjct: 527 VIHSAGSDLLHLINELLDLAKIESGQIDLVEDQIDIHSLTRNIEGLFRISAEEKSINFKT 586

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            +        +       ++L NL   A      GGK+ ++ +       F ++ +G   
Sbjct: 587 TIDPEAPSTFLCDEYRLEQVLKNLLSNAFKFTLNGGKIELTYKHVNGNIHFIVQDDGIGI 646

Query: 159 RFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                    +  +  DG+         +       LA     R+  E   D     + +L
Sbjct: 647 APEKQKLIFEAFKQEDGSTSRKYGGTGLGLSICRELATLLGGRISLESEPDKGSTFTFIL 706

Query: 214 E 214
            
Sbjct: 707 P 707


>gi|237716271|ref|ZP_04546752.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262407876|ref|ZP_06084424.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229443918|gb|EEO49709.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. D1]
 gi|262354684|gb|EEZ03776.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 885

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 501 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 558

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 559 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVHDAHIFRTPQGVSLVYESSDESLMI 618

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 619 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLADNQIV-FHVTDTGTGI-EPEKVGRVF 676

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 677 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVNSEFGKGTTFTFTLP 724


>gi|228935979|ref|ZP_04098789.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823747|gb|EEM69569.1| hypothetical protein bthur0009_44240 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 484

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKESIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|46908672|ref|YP_015061.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47092786|ref|ZP_00230571.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226225048|ref|YP_002759155.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825378|ref|ZP_05230379.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254932259|ref|ZP_05265618.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|46881944|gb|AAT05238.1| histidine kinase [Listeria monocytogenes serotype 4b str. F2365]
 gi|47018874|gb|EAL09622.1| histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225877510|emb|CAS06224.1| two-component sensor histidine kinase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|293583816|gb|EFF95848.1| histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594621|gb|EFG02382.1| histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|328465108|gb|EGF36376.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332312930|gb|EGJ26025.1| Histidine kinase [Listeria monocytogenes str. Scott A]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE      + +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEVLLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSR 113
           +                 VD    +    + I +                          
Sbjct: 423 ILALSRIEQNPVAENVELVDVDEVIEQSARTIFEMATEKNIRVTIPEKTSASVMIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +I++NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQIVINLLSNAINYTPVDGKVEVKLIEQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|307945129|ref|ZP_07660465.1| two component sensor kinase [Roseibium sp. TrichSKD4]
 gi|307771002|gb|EFO30227.1| two component sensor kinase [Roseibium sp. TrichSKD4]
          Length = 625

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLD--EVGIEDEVMQL 52
           + +     + +  L AL  + + + H+   P+ A+ +  +    LLD        E +  
Sbjct: 374 LRRTQAELVQAGKLAALGQMSAALSHEFNQPLAAVKSYADNAVKLLDIGRTDETRENVTR 433

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSW 104
           I   +       K +R      G     + L  I       +           +      
Sbjct: 434 ISEMADRMASISKHLRNFARRPGEKTRPVVLTQIINDSRALVQPRLKSANASLEFAIPDK 493

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE 162
             + +       ++++NLF  A  ++       I +   D +     +++ +G      E
Sbjct: 494 DIQVLGGHIRLQQVIVNLFTNALDAMKDQAHPVIDMTLEDQETHCTLTVRDHGPGVLEGE 553

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +I D    +    +   +       +  +    L      D   V    L K
Sbjct: 554 -FEKIFDPFYTTKQPGEGMGLGLSISYNIIKDFGGDLRVTNHPDGGAVFELTLRK 607


>gi|265762536|ref|ZP_06091104.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255144|gb|EEZ26490.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|301162051|emb|CBW21595.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 633

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +       +  L +   + + H+I +P+ AI     LL  V  ++E+++   +   + 
Sbjct: 397 MKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVEDKEEMLEYAGIIETNT 456

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105
            + L+ +      +     +      +      ++  ++V               +    
Sbjct: 457 ELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEVSLSFAERLPQ 516

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L NL + A     +G           +   F +   G      E+  
Sbjct: 517 CVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDTGCGM-SAEQCE 575

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      + I    +      ++  +    +  +       V    L 
Sbjct: 576 HVFERFVKYNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGSVFWFTLP 626


>gi|229153754|ref|ZP_04281895.1| hypothetical protein bcere0011_52530 [Bacillus cereus m1550]
 gi|228629707|gb|EEK86394.1| hypothetical protein bcere0011_52530 [Bacillus cereus m1550]
          Length = 363

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|29346408|ref|NP_809911.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568192|ref|ZP_04845603.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338304|gb|AAO76105.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842265|gb|EES70345.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 810

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 59/228 (25%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E   ++E    I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETESKEECQDYIKIVQDNND 637

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                   +      +    +     +           +      
Sbjct: 638 LLLRLISDILDLAKIEAGTFNFVYADLDVNEVCSEIIKSTGMKVKGNIKLLFEKQIPECH 697

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ N    A      G       Q S  +  F ++  G      +  +  
Sbjct: 698 IYTDKNRFMQVITNFINNALKFTHEGTIALGYEQISSQKIRFYVRDTGVGIPASKINSVF 757

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +    +       +  + +  +  +  +         L 
Sbjct: 758 ERFVKLNNFVQGTGLGLSICKSIITQMEGEIGVDSTEGAGSCFWFTLP 805


>gi|60680514|ref|YP_210658.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491948|emb|CAH06708.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 633

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +       +  L +   + + H+I +P+ AI     LL  V  ++E+++   +   + 
Sbjct: 397 MKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVEDKEEMLEYAGIIETNT 456

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105
            + L+ +      +     +      +      ++  ++V               +    
Sbjct: 457 ELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEVSLSFAERLPQ 516

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L NL + A     +G           +   F +   G      E+  
Sbjct: 517 CVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDTGCGM-SAEQCE 575

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      + I    +      ++  +    +  +       V    L 
Sbjct: 576 HVFERFVKYNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGSVFWFTLP 626


>gi|53712343|ref|YP_098335.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215208|dbj|BAD47801.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 633

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +       +  L +   + + H+I +P+ AI     LL  V  ++E+++   +   + 
Sbjct: 397 MKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVEDKEEMLEYAGIIETNT 456

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105
            + L+ +      +     +      +      ++  ++V               +    
Sbjct: 457 ELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEVSLSFAERLPQ 516

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L NL + A     +G           +   F +   G      E+  
Sbjct: 517 CVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDTGCGM-SAEQCE 575

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      + I    +      ++  +    +  +       V    L 
Sbjct: 576 HVFERFVKYNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGSVFWFTLP 626


>gi|323126806|gb|ADX24103.1| sensor histidine kinase [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 450

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 70/224 (31%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLK--- 65
           L  S + H++ +P+ ++ + LE LDE  I++++        +             L    
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGAIKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      M     +  S+ +   L   +      +    R     +      + + 
Sbjct: 271 IDNQVTQLSVEMTNFTAFMTSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQHHGFIWAKSDYGKGSTFTIVLP 434


>gi|301058202|ref|ZP_07199252.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300447704|gb|EFK11419.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 557

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 75/231 (32%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     +  + LV  + + I H+I +P+ +I  S+E+L E    D   + +       I 
Sbjct: 321 EESMKRVEGLALVGEMAAGIAHEIRNPMASISGSIEVLKEGNDWDSTQKRLMAIVSREID 380

Query: 63  RLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           RL  +   F              D    + +   + +     +K ++V        +   
Sbjct: 381 RLNQLISDFLIFARPKETKWRIFDLNELIKESLTLFKISPRWNKNIRVITHFIDSVMIES 440

Query: 115 RA----KILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                 ++L NLF+ A  ++P              + Q ++ +    ++  G+       
Sbjct: 441 DPALIKQVLWNLFLNACDAMPEGGILEIGTKWAFNTPQSTEKDVAIVIRDTGDGFDSIAL 500

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      +      +    V  +  + + R+  +   +    +   L 
Sbjct: 501 P-KLFTPFFTTKERGSGLGLATVKRIVDQLRGRISGKNHPESGAEIVITLP 550


>gi|46446999|ref|YP_008364.1| putative two-component sensor histidine kinase [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400640|emb|CAF24089.1| putative two-component sensor histidine kinase [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 410

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 71/228 (31%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAI 61
           +      S +  +  + + + H+I +P+G I     LL +   +   +Q +         
Sbjct: 182 QQAANQYSRLKELGEMAAHLAHEIRNPLGGIKGFATLLQQDLADRPELQQMAYHIIEGTD 241

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL-- 119
               F+     YT    +         +      +   +Q   +            +   
Sbjct: 242 SLNHFVSSILTYTRPFQARFE---HVNLKTYLEEIGLLLQADVSWNASFSFNLNTHLPDL 298

Query: 120 -------------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                        LNL + A  ++P+GGK+T+SV+  ++E +  +   G      E   +
Sbjct: 299 VLSIDPPLLKSAILNLLVNAMQAMPQGGKITVSVEKMQDEVVIIISDTGIGI-SKENLNK 357

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +    V  +   ++  +  +    +    +  L 
Sbjct: 358 IFSPFFTTKETGTGLGLAEVQKVIQAHQGTIEVKSEVGNGTSFTIKLP 405


>gi|196047143|ref|ZP_03114360.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196022013|gb|EDX60703.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 462

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 62/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E     + ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPKQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|75907850|ref|YP_322146.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75701575|gb|ABA21251.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1026

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 23/232 (9%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLS 56
                 +  +       S + H++ +P+ AI   L LL            +  + Q +  S
Sbjct: 791  TEQQAIEQIK--NEFISIVSHELRTPLTAIQGFLGLLNTGIYDNKSQKAKWMIQQALTNS 848

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------E 107
                 +    + L    +G V  +  +     +++  +   + + ++             
Sbjct: 849  DRLVRLVNDILDLERLSSGRVQLVKEVCHAADLMQRAVEGVQSIALASAITISLTPTTAC 908

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                     + L+NL   A    P    +T+S Q   +  +F ++  G      +    F
Sbjct: 909  VWASPDLIIQTLINLLSNAIKFSPHNSVITLSAQPQSDWVLFKVQDQGRGIPANKLETIF 968

Query: 165  TQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    ++          +       +  ++   +  E            L 
Sbjct: 969  ERFQQVDISDARAKGGTGLGLAICQSIIQQHDGSIWAESTLGEGSTFYFTLP 1020


>gi|320160070|ref|YP_004173294.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
 gi|319993923|dbj|BAJ62694.1| two-component sensor histidine kinase [Anaerolinea thermophila UNI-1]
          Length = 2319

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 17/240 (7%), Positives = 67/240 (27%), Gaps = 29/240 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            ++I   +    + +   + + H++ +P+ +I   +E++      +    +   +++++ +
Sbjct: 2076 RDITHEVQVDRMKSEFVANVSHELRTPMTSIKGYVEIMLLGATGELTPQQRHFLEIVKNN 2135

Query: 57   SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +    + +  +                          + +                +   
Sbjct: 2136 TERLGVLVNDLLDLSRIESGKITLNMTDLNLRLLAEEVMEYVSRRSQEEEKPMNFSLEVE 2195

Query: 106  GEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +  +     +++ NL +  +   P  G V + +  +  E    ++ +G      E
Sbjct: 2196 ENLPTVRGDEERIRQVITNLVVNGYNYTPENGHVWVRIFRNDGEVQVDVQDDGIGISI-E 2254

Query: 163  KFTQIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIID--DHNVVLSALLE 214
               +I +                 +       +   +  R+  +           S  L 
Sbjct: 2255 DQERIFERFYRGEDPLVLKTAGTGLGLAVAKTIVTMHNGRIWFKSSGIRGEGSTFSFTLP 2314


>gi|227523373|ref|ZP_03953422.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227089479|gb|EEI24791.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 617

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 66/225 (29%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLA 70
              S + H++ +P+ ++ + +E L +   +D  +           +     +    + L+
Sbjct: 380 QFVSNVSHELRTPLTSVRSYIEALHDGAWKDPKLAPKFLKVTQDETDRMIRMINDLLTLS 439

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----------------RE 114
              +G+    + L +I ++    +     +       +   +                  
Sbjct: 440 RMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKRDLWVDLDTDR 499

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L NL   A    P GG +T  + +++N+ I S+   G      +            
Sbjct: 500 FTQVLDNLMNNAIKYSPDGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVD 559

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +      +L  E ++         L 
Sbjct: 560 KARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTFYIALP 604


>gi|227508144|ref|ZP_03938193.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
 gi|227511167|ref|ZP_03941216.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227085649|gb|EEI20961.1| histidine kinase [Lactobacillus buchneri ATCC 11577]
 gi|227192373|gb|EEI72440.1| histidine kinase [Lactobacillus brevis subsp. gravesensis ATCC
           27305]
          Length = 617

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 66/225 (29%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLA 70
              S + H++ +P+ ++ + +E L +   +D  +           +     +    + L+
Sbjct: 380 QFVSNVSHELRTPLTSVRSYIEALHDGAWKDPKLAPKFLKVTQDETDRMIRMINDLLTLS 439

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----------------RE 114
              +G+    + L +I ++    +     +       +   +                  
Sbjct: 440 RMDSGTQKMEVELVNINELFNYVLNRFDMILKKDEHPEKMYTIKRYFTKRDLWVDLDTDR 499

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L NL   A    P GG +T  + +++N+ I S+   G      +            
Sbjct: 500 FTQVLDNLMNNAIKYSPDGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVD 559

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +      +L  E ++         L 
Sbjct: 560 KARSRQQGGSGLGLAISKEVVEALHGQLWAESVEGKGSTFYIALP 604


>gi|253563619|ref|ZP_04841076.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947395|gb|EES87677.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 633

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +       +  L +   + + H+I +P+ AI     LL  V  ++E+++   +   + 
Sbjct: 397 MKEAQLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSMVEDKEEMLEYAGIIETNT 456

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105
            + L+ +      +     +      +      ++  ++V               +    
Sbjct: 457 ELLLQLINDILDMSKIESGMYDFHVTQVDANQLMSEVEQVARLRIRTDEVSLSFAERLPQ 516

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L NL + A     +G           +   F +   G      E+  
Sbjct: 517 CVFHTDKNRLIQVLTNLVVNAIKFTSQGEIQIGYRLQDAHTLYFYVSDTGCGMSV-EQCE 575

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      + I    +      ++  +    +  +       V    L 
Sbjct: 576 HVFERFVKYNTFIQGTGLGLSICKMIIEKLGGEIGVQSESGKGSVFWFTLP 626


>gi|261403959|ref|YP_003240200.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261280422|gb|ACX62393.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 764

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 69/222 (31%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
           + +      ++ V  L + + H+I +P+  +   L+L  +          +    +  I 
Sbjct: 535 EELLRRSEKLNTVGQLAAGVAHEIRNPLTTLRGFLQLQQQTHKANPDHIDLMLSELDRIN 594

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEKIDLSR 113
           L     +I  K   + F        +  +            ++ ++  +           
Sbjct: 595 LIVSEFLILAKPQAINFQERDVGVIMGDVISFLDSQAHLYGIEFKLDFIEEPTFVHCEEN 654

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  ++ +NL   A  ++P GG + I   +    +    ++  G      +    + +  +
Sbjct: 655 QLKQVFINLLKNAIEAMPEGGNIWIRLTRPQPEQIQIDIRDEGQGI-PEDMMPHLGEPFI 713

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +   ++  +  E        +S +L 
Sbjct: 714 TNKETGTGLGLMVSQRIIQGHRGTMEIESEVGVGTRVSIVLP 755


>gi|229051554|ref|ZP_04195031.1| hypothetical protein bcere0027_54620 [Bacillus cereus AH676]
 gi|229110099|ref|ZP_04239675.1| hypothetical protein bcere0018_23540 [Bacillus cereus Rock1-15]
 gi|228673291|gb|EEL28559.1| hypothetical protein bcere0018_23540 [Bacillus cereus Rock1-15]
 gi|228721796|gb|EEL73263.1| hypothetical protein bcere0027_54620 [Bacillus cereus AH676]
          Length = 363

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|56419442|ref|YP_146760.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|297530902|ref|YP_003672177.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|56379284|dbj|BAD75192.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|297254154|gb|ADI27600.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 354

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 20/231 (8%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           ++  NL +  ++     S + H+I SP+ +I      L    +  E              
Sbjct: 118 DMAANLQAMEEMRQEFISNVSHEIGSPLTSIRGFARALKNEDLSREQRLHYLDIIETECV 177

Query: 59  ----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                        +           +  +D+ +    +    +          +      
Sbjct: 178 RLSKLSENLLRLAMLDSDHYPFHPTSYRLDTQLQTLILHCEPQWAEKELNMCVLFEKVII 237

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                  +++ LNL   A    P+GG +TI +Q    + I ++   G      +    F 
Sbjct: 238 TADEDLLSQVWLNLIHNAIKFTPKGGTITIQLQRRGEQAIVTVSDTGPGINEHDQLRIFE 297

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +           +       +   +   +  +         +  L 
Sbjct: 298 RFYKADKSRHRAAGGSGLGLSIAKKIVDIHHGIISVQSQPGEGATFTVELP 348


>gi|15616588|ref|NP_244894.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10176651|dbj|BAB07745.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 607

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 68/219 (31%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFMRL-AF 71
             + + H++ +P+  + + LE LD+  + D       + + +  +   I  +  +   + 
Sbjct: 380 FVANVSHELRTPLTTMKSYLEALDDGAMNDPNLAPRFLHVTQNETERMIRLVNDLLQLSK 439

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILL 120
             T      +   D+   + D I   + +        I    +             +++ 
Sbjct: 440 IDTHDYKLNLSWVDLGPYLHDMIDRHEIIAKEKDIHFIRKITKHATFVEIDQDKLTQVID 499

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGN--VEST 175
           N+   A    P GG VTI++    +    S+   G         + F +    +     +
Sbjct: 500 NILSNAMKYSPEGGDVTITLLHQGHNVRVSISDQGMGIPKESQTKIFDRFYRVDKARARS 559

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       L H +   +  E        +   L 
Sbjct: 560 VGGTGLGLAIAKELVHAHGGEIWVESKYKVGTTIYFTLP 598


>gi|229178922|ref|ZP_04306281.1| hypothetical protein bcere0005_22770 [Bacillus cereus 172560W]
 gi|228604575|gb|EEK62037.1| hypothetical protein bcere0005_22770 [Bacillus cereus 172560W]
          Length = 360

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISIKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|77745279|gb|ABB02540.1| signal transduction histidine kinase [Lactobacillus reuteri]
          Length = 621

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 28/226 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+ ++ + +E L      +  I  + +++++  +   I  +  +    
Sbjct: 380 QFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPKFLKVVQDETDRMIRMINDLLSLS 439

Query: 68  --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                          +   +   +D    +   E+  +      +R            + 
Sbjct: 440 RMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTD 499

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +++ N+   A    P GG +T  + ++ N  I S+   G      +           
Sbjct: 500 KFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRV 559

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + ++         L 
Sbjct: 560 DKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 605


>gi|289435761|ref|YP_003465633.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
 gi|289172005|emb|CBH28551.1| histidine kinase [Listeria seeligeri serovar 1/2b str. SLCC3954]
          Length = 591

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE      + +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEALLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113
           +               G+VD    +    + I +             +            
Sbjct: 423 ILALSRIEQNPVTENVGTVDVDDVIDQSVRTIFELATEKNIQVSAPEKTVPPVIIETNRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + ++E I  +  NG      +   ++ +    
Sbjct: 483 QLQQILINLLSNAINYTPVDGKVEVKLMERESEVIIEVTDNGIGIPTKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|322419346|ref|YP_004198569.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320125733|gb|ADW13293.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 493

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 68/228 (29%), Gaps = 17/228 (7%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIH-------NS-LELLDEVGIEDEVMQL 52
           K I     +  L ++  L S + H+I +P+G I            +  D V +   +   
Sbjct: 263 KAIEQLAQNEKLASIGYLASGVAHEINNPLGGITICFKNLAGFTAQTPDSVKLTMAIEDG 322

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDL 111
           ++         L F R +      V     +  +  + +         +++    E    
Sbjct: 323 LKKIKGIVEQLLDFSRASKTEKEPVALNGLIRRLLVLFQYEAQRRQIVIELELDEEIPCC 382

Query: 112 SRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +     ++ +NL   A  ++  GG + IS          +    G     PE    I 
Sbjct: 383 VADENKISQVFMNLITNALQAMESGGTLRISTALEGELCRIAFGDTGAGI-APEIIPHIF 441

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +    +   +       +  +++  L  E         +  L 
Sbjct: 442 DPFFSTKKVGEGTGLGLSVSRGIIEQHQGELQVESEPGLGTTFTIRLP 489


>gi|237716423|ref|ZP_04546904.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408024|ref|ZP_06084572.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294643626|ref|ZP_06721428.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294808045|ref|ZP_06766818.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229444070|gb|EEO49861.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354832|gb|EEZ03924.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292641003|gb|EFF59219.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294444686|gb|EFG13380.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 810

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 17/226 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    L  +    L  + + H+I +P+ AI     LL E     E  + I++   +  
Sbjct: 580 ARDKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDSRSERQEYIKIVQENNE 637

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                        +VD      +I + +   +     + +     +  
Sbjct: 638 LLLQLISDILDLSKIEAGTFNFVYTNVDVNETCSEIIKSMGMKVGKGVELILEEPFPECY 697

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     +++ N    A     +G       Q S  +  F ++  G      ++ +  
Sbjct: 698 IYTDKNRFTQVISNFINNALKFTQQGSITLGYEQVSHQKIKFYVRDTGMGIPEEKQKSVF 757

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  + +    +       +  +    +  +  +         
Sbjct: 758 ERFVKLNTFVQGTGLGLSICKSIVSQMGGEIGVDSTEGIGSCFWFT 803


>gi|258405430|ref|YP_003198172.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797657|gb|ACV68594.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
          Length = 763

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 70/237 (29%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55
            +    +L +  L +L  L   I HD  + + AI N++ L              +Q    
Sbjct: 384 KRREQEHLRAEKLESLGVLAGGIAHDFNNILTAILNNITLARVGQRLDVAVASKLQDAER 443

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKID 110
           ++  A    + +         V     L ++ +    F      V               
Sbjct: 444 ATQRAKKLTQQLLAFSQGGLPVTQCAPLDELLEDAISFALRGSNVCYRVDIPSDLWPVQV 503

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------------ENIFSLKINGNL 157
            + + A++  NL + A  ++  GG++ I  ++  +                   + NG  
Sbjct: 504 DTGQIAQVFDNLAINASQAMANGGQLDIWAENVPSAATFSSETQTSRGYVRVHFQDNGCG 563

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   QI D    +  +   +    V  +   +   +  +  +      +  L 
Sbjct: 564 IPEAD-QGQIFDPYFTTKPEGSGLGLSSVFSIIKRHGGTIHVQSAEGRGTTFTLYLP 619


>gi|196040228|ref|ZP_03107530.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196029083|gb|EDX67688.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 672

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 69/218 (31%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS+++L+  + + I H+I +P+  I   L+LL E    ++      L       
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 505

Query: 63  RLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               +                      +  +  + ++         +V  +     +   
Sbjct: 506 ANSIITEFLSIGNTKKLDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661


>gi|227543740|ref|ZP_03973789.1| histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300908805|ref|ZP_07126268.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
 gi|227186308|gb|EEI66379.1| histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300894212|gb|EFK87570.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
          Length = 598

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 67/226 (29%), Gaps = 28/226 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+ ++ + +E L      +  I  + +++++  +   I  +  +    
Sbjct: 357 QFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPKFLKVVQDETDRMIRMINDLLSLS 416

Query: 68  --------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                          +   +   +D    +   E+  +      +R            + 
Sbjct: 417 RMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTD 476

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +++ N+   A    P GG +T  + ++ N  I S+   G      +           
Sbjct: 477 KFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRV 536

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + ++         L 
Sbjct: 537 DKARSRKQGGTGLGLAISKEVINMLGGQIWVDSVEGKGSTFYISLP 582


>gi|226312805|ref|YP_002772699.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226095753|dbj|BAH44195.1| probable two-component sensor histidine kinase [Brevibacillus
           brevis NBRC 100599]
          Length = 439

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 60/230 (26%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            K          L A+  L + + H+I +P+ AI   ++LL E G  +       +    
Sbjct: 207 KKYEEELNKREALAAVGQLAAGMAHEIRNPLTAIKGFIQLLREQGEANRSESYFSVILTE 266

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----------EDFIAVDKRVQVS---WTG 106
                  +          D  I       +            +      ++++       
Sbjct: 267 IERIDGLLNDVLVLARYRDDKIVSERFLVMDELYGVIRLLEPEANRRGIKLELDIAQGEW 326

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFT 165
                     + +LN+   A  +L   G +      S  N+ I  ++ NG          
Sbjct: 327 HVFGHRSRIKQAILNILKNALEALMTQGNLVHVKVYSSLNQVIIVVEDNGPGLSDSCL-Q 385

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLE 214
            +      +  +   +       +  ++   L  E             L 
Sbjct: 386 NLFVPFYTTKQEGTGLGLSTTQRIIADHGGELYAENSPKWKGARFEIRLP 435


>gi|86156838|ref|YP_463623.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773349|gb|ABC80186.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 300

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 62/225 (27%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             L     +++ H++ +P+ +I   +E L      +   + E ++++   +      +  
Sbjct: 69  AKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQDPQRQREALEIVAEETARLSGLINR 128

Query: 67  MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +                                   +    ++++        +  +R+ 
Sbjct: 129 LLDWARMESGRRVYELSRQPLGPILDAALAAFEPQQLHHPVQLELDLPSRLPSVMADRSA 188

Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE- 173
           ++   LNL   A        ++ +S   S      ++  NG      ++           
Sbjct: 189 LVEAVLNLLNNAFKYTGAEKRIRLSAVASGPTVTIAVTDNGPGIPQRDQKHVFDKFYRAS 248

Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                T++   +    V  +   +  ++  E            L 
Sbjct: 249 DPLKRTVEGTGLGLAMVKHIVIGHGGKVSVESEPGRGATFVIALP 293


>gi|15599919|ref|NP_253413.1| two-component sensor CbrA [Pseudomonas aeruginosa PAO1]
 gi|9950985|gb|AAG08111.1|AE004886_3 two-component sensor CbrA [Pseudomonas aeruginosa PAO1]
 gi|12082250|dbj|BAB20866.1| CbrA [Pseudomonas aeruginosa]
          Length = 983

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I ++++   +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGELTEISEQILDQTK 804

Query: 55  LSSMSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +    + V+            
Sbjct: 805 RVSRIVQSLMSFAHSGSHLQALEPVCLSEVAQEAIGLLSLNRRSVEVEFFNLCDPAHWVE 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P GG + +  + S++     ++  G+         Q+ +
Sbjct: 865 GDSQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLVVEDEGSGI-PKAIMDQLFE 923

Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +        +    V  +  E+  ++  E   D            L +
Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIESPTDHQREGGTRFRVTLPR 975


>gi|254244372|ref|ZP_04937694.1| two-component sensor CbrA [Pseudomonas aeruginosa 2192]
 gi|126197750|gb|EAZ61813.1| two-component sensor CbrA [Pseudomonas aeruginosa 2192]
          Length = 983

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I ++++   +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGELTEISEQILDQTK 804

Query: 55  LSSMSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +    + V+            
Sbjct: 805 RVSRIVQSLMSFAHSGSHLQALEPVCLSEVAQEAIGLLSLNRRSVEVEFFNLCDPAHWVE 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P GG + +  + S++     ++  G+         Q+ +
Sbjct: 865 GDSQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLVVEDEGSGI-PKAIMDQLFE 923

Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +        +    V  +  E+  ++  E   D            L +
Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIESPTDHQREGGTRFRVTLPR 975


>gi|113972199|ref|YP_735992.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           sp. MR-4]
 gi|113886883|gb|ABI40935.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           sp. MR-4]
          Length = 709

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAEVVKEEIDLV 511

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K+      +++ 
Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++               QD        ++  G+   
Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWIRTYDWLQQDMPIGVKIEVEDEGSGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+  +I D    +  D   +       +       +    +     + +  L
Sbjct: 631 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684


>gi|116626238|ref|YP_828394.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229400|gb|ABJ88109.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 760

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 74/238 (31%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA- 60
            +     +  ++ + +L + I HD  + +G I  S EL+   G +   +    L  +   
Sbjct: 374 KQEYLMAMQKLESLGVLAAGIAHDFNNLLGGILASAELISAGGEQGAPLDEESLLRIRTA 433

Query: 61  --------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKI 109
                      + +         SV+    + ++ ++++  I+    + V +        
Sbjct: 434 AIRGGEIVRQLMAYGGEESQAFSSVEIPQLVNEMLELLKISISKRAVLNVDFPAGLPSVR 493

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-------------KVTISVQDSKNENIFSLKINGN 156
             + +  +++LNL + A  +L                     +V  S++    ++  +G 
Sbjct: 494 ANTAQLRQVVLNLIVNASEALEDTQGVIAITAARVSGDDYQPAVLASQDYVSLTVSDSGC 553

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I D    S      +    V  +   +   +              LL 
Sbjct: 554 GM-TEEVQARIFDPFFTSKFAGRGLGLASVQGIIRSHGGAIHVTSAPGRGSRFEVLLP 610


>gi|108805803|ref|YP_645740.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108767046|gb|ABG05928.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 471

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 57/217 (26%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             +   H++ +P+ +I     +L+     +     E    IR  +      ++ +     
Sbjct: 248 FAADASHELRTPLTSIAGYARMLERWALKDPDAAREGAAAIRREAERMQHLVEELLALAR 307

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF-- 123
                    G  D      +              V        ++   +R ++   L   
Sbjct: 308 GDEGRPLELGRADLAEVAEESAAAARAAAGDRVSVVWEPPEGPVEAVFDRERVRQALAAL 367

Query: 124 -MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTID 177
              A    P GG+V++       +    ++  G      +    F +     G     + 
Sbjct: 368 LDNAVRYTPEGGRVSVRALRRDGKAAVRVEDTGPGIPEEQLGMIFERFYRVDGTRSRRLG 427

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +A  +   +    +       + LL 
Sbjct: 428 GAGLGLSIARQIAEAHGGAIEVRSVPGEGSSFTLLLP 464


>gi|229070102|ref|ZP_04203369.1| hypothetical protein bcere0025_22980 [Bacillus cereus F65185]
 gi|228713016|gb|EEL64924.1| hypothetical protein bcere0025_22980 [Bacillus cereus F65185]
          Length = 360

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|154491989|ref|ZP_02031615.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC
           43184]
 gi|154088230|gb|EDN87275.1| hypothetical protein PARMER_01620 [Parabacteroides merdae ATCC
           43184]
          Length = 794

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + K       S  L +   + + H+I +P+ AI     LL   ++    +E + +I  ++
Sbjct: 412 LRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLLTMAEDEEERNEYINIISSNN 471

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +  +  +                 +D    L DIEQ          ++         
Sbjct: 472 ELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPEGVQISFVEKMPYC 531

Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  ++    +++ N    A      G                 ++  G     PEK   
Sbjct: 532 IIMSDKNRLAQVITNFINNAIKFTKEGSIRFGYRHKDDKLL-LYVRDTGCGI-EPEKKDL 589

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +  V   S      +      ++  +    +  E            L 
Sbjct: 590 VFNRFVKLNSFAQGTGLGLAICQMIVKKMGGEIGVESQLGKGSTFWFTLP 639


>gi|49477450|ref|YP_036123.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49329006|gb|AAT59652.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 351

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 294 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 346


>gi|56696820|ref|YP_167182.1| phosphate regulon sensor histidine kinase, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56678557|gb|AAV95223.1| phosphate regulon sensor histidine kinase, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 348

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 58/237 (24%), Gaps = 33/237 (13%)

Query: 12  MDLVALL----CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAII 62
           M+    +     + + H++ +P+ AI   +E L      +   +D  + ++   +     
Sbjct: 112 MEQAGQMRRDFVANVSHELRTPLTAIMGFIETLRGPARNDPAAQDRFLGIMEQEAGRMNR 171

Query: 63  RLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +  +                           +  +          +  +     + +  
Sbjct: 172 LVGDLLSLNRVESEERVRPRGAVDLSGQIASTLNSLRPLAAEAGVELYFTGPETPVIVPG 231

Query: 114 ERAKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLA---RF 160
           +  +I   L  +   ++  G           +               +   G        
Sbjct: 232 DEDQIRQVLTNLIENAIKYGGSGGEVRVTLSEAERDPAVRGPAARIQVSDKGAGIDAVHL 291

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           P    +    +   +       +    V  +   ++ R+  E         + +L K
Sbjct: 292 PRLTERFYRADNHRSRQKGGTGLGLAIVKHIVTRHRGRMRVESTLGSGTTFTVILPK 348


>gi|301059870|ref|ZP_07200761.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300446020|gb|EFK09894.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 375

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 75/238 (31%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----------ELLDEVGIEDEV 49
           A+     +++  L +L  L + + H+I +P+  I  S           EL       D  
Sbjct: 118 ARMEQQMIATERLASLGTLAAGVAHEINNPLAIIKESAGWMKSILQKKELAQMPRRGDFE 177

Query: 50  MQL------IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           M L      +  +       L  ++        VD    + +   + +          + 
Sbjct: 178 MALGKIENGVERARRITHQLLGSVKQTDATLSKVDLKELVEETMVLHQKEADQKGVQLLE 237

Query: 104 ----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                         +  ++L+N+   A  +   GGK+T++ + S++    ++  +G    
Sbjct: 238 TIDPGKNVIWSDPYKLRQVLINILSNAVHATDAGGKITVTAETSEDHATLTISDSGRGI- 296

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             E   +I +    +    +   +  +    +  +    +  E         S  L K
Sbjct: 297 PGEHLKKIFEPFFSTKPTGEGTGLGLFVTRSIIDKLGGEIEVESRVGQGTQFSVKLPK 354


>gi|229158276|ref|ZP_04286343.1| hypothetical protein bcere0010_44540 [Bacillus cereus ATCC 4342]
 gi|228625234|gb|EEK81994.1| hypothetical protein bcere0010_44540 [Bacillus cereus ATCC 4342]
          Length = 484

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K         N   I  +  NG+   F  
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVSIDNNKVIVKVMDNGSGIEFDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|154687604|ref|YP_001422765.1| putative two-component sensor histidine kinase [Bacillus
           amyloliquefaciens FZB42]
 gi|154353455|gb|ABS75534.1| putative two-component sensor histidine kinase [Bacillus
           amyloliquefaciens FZB42]
          Length = 353

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 55/222 (24%), Gaps = 17/222 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----------- 58
               L     S + H+I +P+ ++     LL +  +  E                     
Sbjct: 124 EMEKLKQEFISNVSHEIQTPLTSLKGYAHLLKKPDLSYEERGRYLHIIETETERLSKISE 183

Query: 59  ---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                    +           +D  +    +    E      + +               
Sbjct: 184 NLLKLTALERQTEPIQKKPFRIDKQLRRTILTCEPEWSAKQIEFLIDLQESYVYGDEALL 243

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172
           +++ +NL   A      GG++++ + D        +  +G      +    F +    + 
Sbjct: 244 SQVWMNLIHNAVKFTGEGGRISVKIADLPGAAAVEIADDGIGMEPEQAERVFERFYKADK 303

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +A  +   +  E       +   +L 
Sbjct: 304 ARNEGGSGLGLSIAQKIAELHGGSIEVESKHGEGTLFRVILP 345


>gi|107103824|ref|ZP_01367742.1| hypothetical protein PaerPA_01004895 [Pseudomonas aeruginosa PACS2]
 gi|116052872|ref|YP_793189.1| two-component sensor CbrA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218893820|ref|YP_002442689.1| two-component sensor CbrA [Pseudomonas aeruginosa LESB58]
 gi|296391551|ref|ZP_06881026.1| two-component sensor CbrA [Pseudomonas aeruginosa PAb1]
 gi|313109704|ref|ZP_07795644.1| two-component sensor CbrA [Pseudomonas aeruginosa 39016]
 gi|115588093|gb|ABJ14108.1| two-component sensor CbrA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218774048|emb|CAW29864.1| two-component sensor CbrA [Pseudomonas aeruginosa LESB58]
 gi|310882146|gb|EFQ40740.1| two-component sensor CbrA [Pseudomonas aeruginosa 39016]
          Length = 983

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I ++++   +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGELTEISEQILDQTK 804

Query: 55  LSSMSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +    + V+            
Sbjct: 805 RVSRIVQSLMSFAHSGSHLQALEPVCLSEVAQEAIGLLSLNRRSVEVEFFNLCDPAHWVE 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P GG + +  + S++     ++  G+         Q+ +
Sbjct: 865 GDSQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLVVEDEGSGI-PKAIMDQLFE 923

Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +        +    V  +  E+  ++  E   D            L +
Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIESPTDHQREGGTRFRVTLPR 975


>gi|291286369|ref|YP_003503185.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290883529|gb|ADD67229.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 612

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 82/222 (36%), Gaps = 9/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSA 60
            +     ++ +  + ++   + H++ +P+ +I     LL++    + E +  I+  +   
Sbjct: 385 TQTKLELMNRLSALGVMAGGVAHELNTPLNSIIVLTGLLEDEIPEQSEDLCTIKNEAKRC 444

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRER 115
           +  ++ +R       +   L  +     + E    +D +  +S      +      +   
Sbjct: 445 VDIIQNLRKLAPSKNTDGLLEEVDMKHLIEETVKYMDFKNGISVELHLQNAKLKGYTTLL 504

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++L+NL   A  ++   G +TI + ++++  +  +   G+     E   +I D    S 
Sbjct: 505 QQVLVNLIQNAMDAIESDGLITIELINNEDHVMLIISDTGSGI-DDENIHKIFDPFHTSK 563

Query: 176 ID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    V  +  ++  ++  +   +        LEK
Sbjct: 564 SPEKGMGLGLSLVYSIIKKHGGQINVDSQINRGTRFIIRLEK 605


>gi|265764068|ref|ZP_06092636.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256676|gb|EEZ28022.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 812

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  L +   + I H+I +P+ AI    +LL   D+   ++E  + I+ ++
Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
              +     +                 V        + Q + + +     +Q+       
Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPEGVELQIDEDSPLD 694

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    +++ N    A     +G        D++ +    ++  G      E   
Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHQGTITVGYRIDARQQLEMFVEDTGIGISI-ENQE 753

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  +  +S +    +       +  +    +               L 
Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804


>gi|225016620|ref|ZP_03705812.1| hypothetical protein CLOSTMETH_00527 [Clostridium methylpentosum
           DSM 5476]
 gi|224950584|gb|EEG31793.1| hypothetical protein CLOSTMETH_00527 [Clostridium methylpentosum
           DSM 5476]
          Length = 339

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 68/236 (28%), Gaps = 21/236 (8%)

Query: 1   MAKNICFN---LSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RL 55
           MA+        LS ++ L +   + + H+  +PI +I     LL    +  E        
Sbjct: 101 MAQRFNAMTYDLSHIETLRSDFVANVSHEFKTPIASIEGYATLLQNHNLSQEKHDRYVEK 160

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGL------------GDIEQVIEDFIAVDKRVQVS 103
              ++             +   +  + L              I  +   + A +    + 
Sbjct: 161 ILENSRRLTNLSDNILMLSKLENQEMVLGKTEYRLDEQIRKCILMLENKWTAKNIEFDLE 220

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP- 161
              +    S     ++  N+   A    P GG + + +  +  +   ++  +G+      
Sbjct: 221 LPRQIYYGSESFLERVWSNILDNAIKHSPVGGVIHVGILQTNTQFTVTVADHGDGMTEEV 280

Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     + + +    V  +    K  +  E            L K
Sbjct: 281 KKHIFEKFYQGDSSRKAEGNGLGLALVKRIVELCKGTVTVESSPGRGAKFFVALPK 336


>gi|253699135|ref|YP_003020324.1| GAF sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251773985|gb|ACT16566.1| GAF sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 837

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           M + +  +    + +  L S + HD  + + AI     L    LD   I  + +  +  +
Sbjct: 444 MTEQLRQS-QKREAIGELASGVAHDFNNLLTAIIGFASLAQANLDPDTIPFQYLDEVLNA 502

Query: 57  SMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           S  A    + +    R        VD    +G +E+++   ++    + VS   +   + 
Sbjct: 503 SERATYLTRGLLAFGRNQAANPQPVDLNRIVGQMEKLLGRLLSRQIELTVSLCNDPPTVL 562

Query: 113 RERAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKIN 154
            +  ++   +  +A  +                  LP        V+ +      S++  
Sbjct: 563 ADPGQLDQVVMNLATNARDSMNNAGILTIETAVVDLPPDSNRGYGVKRAGRYARLSVRDT 622

Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          ++ +    +        +    V  +  +N   +  E            
Sbjct: 623 GRGI-DEATRARLFEPFFTTKETGQGTGLGLAIVQGIVQQNGGFIEVESAPGEGACFLIH 681

Query: 213 LE 214
           L 
Sbjct: 682 LP 683


>gi|124266360|ref|YP_001020364.1| sensor histidine kinase [Methylibium petroleiphilum PM1]
 gi|124259135|gb|ABM94129.1| sensor histidine kinase [Methylibium petroleiphilum PM1]
          Length = 685

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 74/238 (31%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     L S  L     L + I H++ +PI  I  +L+LL E          D  ++L
Sbjct: 438 LEQAQAQLLRSEKLATVGQLTASIAHEVNNPIAVIQGNLDLLRELLGPQTAAKVDAELRL 497

Query: 53  IRLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +        + +  +           Y  SV     L D   ++   +A  +        
Sbjct: 498 VDEQIERMRLIVTQLLQFARPNEYAGYVDSVSVARALDDSLLLVGPQLARTRIAVQRDDR 557

Query: 107 EKI---DLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNL 157
                    +E  ++LLNL + A  ++P         +   +           +  +G  
Sbjct: 558 ATASAAINRQELQQVLLNLLINALHAMPDSGTLSLHTRDWHAADGRVQGVQIDVADSGPG 617

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALL 213
              PE  +++    V +  D   +  +    L       L     DD     V S  L
Sbjct: 618 L-GPEIESRLFQPFVTTKTDGTGLGLWISRSLIERYGGTLTAANRDDGARGAVFSVRL 674


>gi|229179502|ref|ZP_04306855.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W]
 gi|228604003|gb|EEK61471.1| hypothetical protein bcere0005_28510 [Bacillus cereus 172560W]
          Length = 448

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448


>gi|52144661|ref|YP_082167.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978130|gb|AAU19680.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 462

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|256378110|ref|YP_003101770.1| histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255922413|gb|ACU37924.1| histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 594

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           MA+     L  +   A   S   H++ +P+  I   LE  ++   + +            
Sbjct: 360 MAQARA-RLEGLRKAA--VSDTAHELRTPLSNIRGWLEAAEDGVTDRDPELIALLLKEAL 416

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-- 109
            ++                   T S   L  + D  +   +  A    + ++ +      
Sbjct: 417 ALQHIVDDLQDLAVADAGGLRLTVSPQPLTTVLDRLRAAHETTATRAGITLTTSAPDTLT 476

Query: 110 --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    ++L NL   A   +P GG+V ++ +   +E + ++   G      +    F
Sbjct: 477 AEADPVRLRQVLDNLVANAVRHVPPGGRVEVTAERDGDEAVITVTDTGTGITPEDLPHVF 536

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +         +    V  L   +   +          + +  L 
Sbjct: 537 DRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVSATSEPGAGSIFTVRLP 588


>gi|228923427|ref|ZP_04086713.1| hypothetical protein bthur0011_44040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836212|gb|EEM81567.1| hypothetical protein bthur0011_44040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 484

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADWEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEVDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+  ++  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGKIWAESELGKGTSIFFSLEK 478


>gi|152986727|ref|YP_001350766.1| two-component sensor CbrA [Pseudomonas aeruginosa PA7]
 gi|150961885|gb|ABR83910.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 983

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I ++++   +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGELTEISEQILDQTK 804

Query: 55  LSSMSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +    + V             
Sbjct: 805 RVSRIVQSLMSFAHSGSHLQALEPVCLSEVAQEAIGLLSLNRRSVEVQFFNLCDPAHWVE 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P GG + +  + S++     ++  G+         Q+ +
Sbjct: 865 GDSQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLIVEDEGSGI-PKAIMDQLFE 923

Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +        +    V  +  E+  ++  E   D            L +
Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIESPTDHSREGGTRFRVTLPR 975


>gi|91772550|ref|YP_565242.1| Cache sensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711565|gb|ABE51492.1| HATPase domain-containing external sensor signal transduction
           histidine kinase [Methanococcoides burtonii DSM 6242]
          Length = 633

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 63/237 (26%), Gaps = 24/237 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           +     L S+D +  +  S + H++ +P+ +I    + L +       G +   ++ +  
Sbjct: 389 EKANKELKSLDQMKDVFLSNVSHELRTPLTSIKGYTQNLYDESLGDINGSQKTSLETVLR 448

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           ++      +  +         +            I     +D  + V      I+     
Sbjct: 449 NADRLRRLVDSLLYISQAQAEIIEYDFKECYIAKIISNTIMDTIMLVEENDLHIEKKIPS 508

Query: 116 AK------------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                         +L N+   A    P GG + + V D +N    ++   G        
Sbjct: 509 DLPTIEADEARLVDMLNNIVDNAIKFTPPGGMIILGVFDDENYLHLTVSDTGIGIPKELI 568

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                                 +  Y    +   +   +  E        +   L K
Sbjct: 569 PNLFKKFYQIDSSIRRKYGGTGLGLYICKKIVDAHSGEIWIESEPHKGTTVHIRLPK 625


>gi|116672336|ref|YP_833269.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
 gi|116612445|gb|ABK05169.1| periplasmic sensor signal transduction histidine kinase
           [Arthrobacter sp. FB24]
          Length = 575

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 65/219 (29%), Gaps = 18/219 (8%)

Query: 14  LVA--LLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           L A     + + H++ +P+ +I   LEL +DE G ED   +L  +   +  +      L 
Sbjct: 353 LAAKDNFVATVSHELRTPLTSILGYLELVIDEPGHEDIQAELRIVERNAVYLLGLVNDLI 412

Query: 71  FGYTGSVDS----------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              + SV+           L      +            +                ++  
Sbjct: 413 AVASESVELVLQETDIAGLLAAAVAADHEKAALCGAALVLDTEEPLTARVDPVRIRQVAG 472

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----ST 175
           NL   A    P GG++T+  + +  + + S+   G      ++               + 
Sbjct: 473 NLISNAVKYSPDGGRITVRARRNGEKLVCSITDTGIGMTKEDQEQAFAKFFRSARSRDTA 532

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    +       +   +   +           +S +L 
Sbjct: 533 IPGAGLGLPISKTIIEGHGGSISLTSAPGEGTTVSFVLP 571


>gi|254283696|ref|ZP_04958664.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
 gi|219679899|gb|EED36248.1| integral membrane sensor hybrid histidine kinase [gamma
           proteobacterium NOR51-B]
          Length = 512

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 58/225 (25%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++  + + H++ +P+ AI    E+L +   + + +   +       I     +L      
Sbjct: 279 SMFLANVSHELRTPLNAIIGYSEMLQDELSDGQQLDQDQFHHDLGTIIFSGRQLLSLIND 338

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQV---------------------SWTGEKIDLSRE 114
            +D          V  + +     +                           E      +
Sbjct: 339 ILDLSKMETGKMTVSLETVDPAALIYQICDALSPLITQKNNTLTLSIADDLPEMESDPAK 398

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE- 173
             +I+ NLF  A      G    I+  +  +  I  +K NG      ++           
Sbjct: 399 LQQIVTNLFSNACKFTEDGVIEVIARIEKNSLLIA-VKDNGIGIAEAQQANVFEAFEQAE 457

Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               S      +    V          +  E         +A L 
Sbjct: 458 SSTGSKYGGTGLGLAIVREFCRMLGGDITLESTPGKGSTFTATLP 502


>gi|206972478|ref|ZP_03233423.1| sporulation kinase B [Bacillus cereus AH1134]
 gi|206732638|gb|EDZ49815.1| sporulation kinase B [Bacillus cereus AH1134]
          Length = 419

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 249

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 250 LNRAQEIIDDYLTFAKPAPEKLDQISIKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 413


>gi|228933287|ref|ZP_04096143.1| hypothetical protein bthur0009_17540 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826448|gb|EEM72225.1| hypothetical protein bthur0009_17540 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 293

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 59  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 235

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 236 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|229170434|ref|ZP_04298103.1| hypothetical protein bcere0007_53610 [Bacillus cereus AH621]
 gi|228613058|gb|EEK70214.1| hypothetical protein bcere0007_53610 [Bacillus cereus AH621]
          Length = 300

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 71  KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYIDIVSSEIE 130

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++ +T +   +  
Sbjct: 131 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIQIRIDFTPDIPLIPC 190

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        ++        G      E+   + +
Sbjct: 191 EGNQLKQVFVNIFKNAIESMPMGGEILIQIDKLDNDQISIRFIDQGCGI-PKERIPYLGE 249

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 250 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTTVEVTLP 294


>gi|108761373|ref|YP_630825.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
 gi|108465253|gb|ABF90438.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
          Length = 970

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 76/231 (32%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSL----ELL----DEVGIEDEVM 50
           + +       +  L A  LL S   H++ +P+  + N+L    ++L     +V +   ++
Sbjct: 716 LREAAVRAAENERLAAIGLLTSGFAHEVRNPLNGLMNALLPLKDMLTGGSADVELSKAML 775

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +++           + +      +   V   +       +      V   V+V       
Sbjct: 776 EVVEECGQRIRHLAESLLSFTRTSESPVVLSLDSSLDSTLSVLAWKVPPGVKVERAYHCS 835

Query: 110 DLSRER----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  R       ++ LNL   A  ++   G+V IS  ++  E I ++  +G     PE   
Sbjct: 836 EPIRGNPGALNQVWLNLLDNALRAVGDKGRVRISTANTAEEAIVTIGDDGVGI-RPEDME 894

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++      +    +   +       +  ++   +    +      +   L 
Sbjct: 895 RLFQPFFSTRAAGEGTGLGLALSRRIIIQHGGSIALSSVPGEGTQVEVRLP 945



 Score = 78.3 bits (191), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 6/112 (5%)

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165
                    +  NL   A     +GG VT+ V++  +E    ++ +G      +    F 
Sbjct: 430 HVDHERIEIVFQNLLGNALKFTQKGG-VTVRVREDDSEVHVEVEDSGQGIAPQDIPVIFD 488

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +           I    V      +   +          V    L K
Sbjct: 489 RFSQADNSGTRRFGGSGIGLALVKETLELHAGGISVTSELGQGSVFHVRLPK 540


>gi|57234548|ref|YP_181367.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57224996|gb|AAW40053.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 853

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 76/227 (33%), Gaps = 19/227 (8%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62
              + +  L ++  + + + H++ +P+ ++    ELL E  + +++ + I++ S  A+  
Sbjct: 622 AQLMITDRLASVGEMAAGLAHELNNPLTSVIGFSELLQEKKLPEDLQRDIQIISQEALRA 681

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLS 112
                  L F R        VD  + +  +  +      V+    V+       E     
Sbjct: 682 AEVIRNLLAFARRHEPSKDWVDMNVLIHKVLDICNYEQRVNNIHIVTNLDADLPEIKADY 741

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQIVD 169
            +  ++LLN+ + A   + +       V       +    S+K +G          +I D
Sbjct: 742 FQMQQVLLNIIINAEYFITKAHGEGTIVISSSRFGDNIRISIKDDGPGMSEN-VLNRIFD 800

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +        +       +  ++  +L  E  +         L 
Sbjct: 801 PFFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIELP 847


>gi|313679063|ref|YP_004056802.1| histidine kinase [Oceanithermus profundus DSM 14977]
 gi|313151778|gb|ADR35629.1| histidine kinase [Oceanithermus profundus DSM 14977]
          Length = 779

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 18/217 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A + S + H+I +P+ A+  SLELL + G+E EV +LI  +  SA      +  +     
Sbjct: 110 ARMLSVLAHEIKNPLFAVLGSLELLTQRGLEAEVHKLIETAHTSAQRMHALVNDSLQLVA 169

Query: 76  SVD---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                                  G++E V        + V +    E +   R   + LL
Sbjct: 170 LEQEGVRLKAERLSLNGLLEELAGEVEPVALASGVHLRVVPLRGDAELLGDRRWLLQALL 229

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDS 178
           NL + A    P GG+V +            ++  G      +   +I +      +  + 
Sbjct: 230 NLALNAVKYTPEGGRVVLRAVADGTRVGLQVEDTGPGIAAGDL-ERIFEPFQRADTKKEG 288

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +   +   +  E            L +
Sbjct: 289 SGLGLAIVKRVVEAHGGEVRVESQAGRGSRFRVELPR 325


>gi|219847392|ref|YP_002461825.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541651|gb|ACL23389.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 490

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMD-LVA---LLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           +   I   LS ++ L +      + + H++ +P+  +  +LE+L+     +  +  E++ 
Sbjct: 244 LTVTINELLSRLERLFSTQQRFVADVSHELRTPLTVMQGNLEVLERGASTDPALVKEMVG 303

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVS 103
            +R  +   I  +  + L      +V             L    ++      V  R+   
Sbjct: 304 DMRRETARLIRMVNDLLLLAQSETNVVLRSEPVELDTLLLEVFRELRPLANQVRLRIGAE 363

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        + LLNL + A    P GG V +S++  +     S+   G      E 
Sbjct: 364 DQILVYGDRDRIKQALLNLGVNALQYTPPGGLVILSLERYEQFACLSVADTGIGISEAER 423

Query: 163 --KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +      +         +    V  +A  +   +            +  L 
Sbjct: 424 DLIFERFYRVDRSRSRHSGGTGLGLSIVKWVAEAHGGYVTVASEVGRGSTFAIYLP 479


>gi|297579442|ref|ZP_06941370.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae RC385]
 gi|297537036|gb|EFH75869.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae RC385]
          Length = 588

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 65/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 349 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 408

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 409 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 468

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 469 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 527

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       +       L            +  L +
Sbjct: 528 ETLPHLFEPFHTTKKNGLGLGLSISQQILQSMHGTLSVATSPLGGARFTITLPR 581


>gi|149181381|ref|ZP_01859878.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850944|gb|EDL65097.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 721

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 63/223 (28%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSA 60
           +       ++ +V  L + I H+I +P+ A+   ++LL+       +    +I+      
Sbjct: 496 QEQLRKSDTLSVVGELAAGIAHEIRNPMTALKGFIQLLENSMQSDHEMYFHVIKTELQRI 555

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRER 115
              +    +             L  I +     +    +  + + +  +      +  E 
Sbjct: 556 ESIITEFLILAKPQAVQYQETDLIRIMKDTLELLNAQAVMHNVQFKERYDKGIPAVFAEP 615

Query: 116 AKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            ++      +   ++                ++ E   S+   G      EK  ++ +  
Sbjct: 616 NQLKQVFINIVKNAIEVMPKGGLISIGISAKNEEEVRISITDEGIGI-PKEKIKKLGEPF 674

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +  E++  +  E            L 
Sbjct: 675 YTTKERGTGLGLMVTFKIVEEHEGTVEVESELGKGTTFHIDLP 717


>gi|34497779|ref|NP_901994.1| two-component sensor [Chromobacterium violaceum ATCC 12472]
 gi|34332795|gb|AAQ59996.2| probable two-component sensor [Chromobacterium violaceum ATCC
           12472]
          Length = 417

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEV 49
           A         ++L           + S I H+I  P+ AI +  +    LL++  ++  +
Sbjct: 165 ASESRLRQHELELARVTRINTMGEMASGIAHEINQPLSAIMSYCQAGLSLLEDDELDMAM 224

Query: 50  MQLI--------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRV 100
           ++            +        +F+         V     + +   +   +    D  +
Sbjct: 225 LRRALTSSVSQADRAGRIIHRLREFVTQKNQQLAPVQLNQAVHNALSLLDYELHDHDIHI 284

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKIN 154
           + ++  E   +  +  ++   +  +A  ++                +         +  N
Sbjct: 285 EQNFAPELPLVYADTIQLEQVVLNLARNAVEAMEPTRPWGRLSITTRRQGERVQLIISDN 344

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G     P+K  +I D    +  +   +              +L+              L 
Sbjct: 345 GCGI-PPDKLDRIFDPFFSTKPNGMGLGLAICQTAVEAFGGKLIAGNKPGSGAEFIIDLP 403


>gi|282901163|ref|ZP_06309093.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281193937|gb|EFA68904.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 968

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           ++I        L     S + H++ +P+ AI  +LE+L      DE    ++++++   +
Sbjct: 731 QDISERHEVEQLKNEFVSVVSHEVRTPLTAIKGALEILATGILVDEPQEAEQMLKIAVSN 790

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE- 114
           S   +      + L    +G +   + L DI  +++  +   + +    + E    + + 
Sbjct: 791 SERLLRLVNNILNLEMLDSGKMRLNLELCDINIMVKQAMETVQPIAQQNSIEISYSALDV 850

Query: 115 -----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L NL   +      G KV I V     E I ++K  G      + 
Sbjct: 851 PNTKILADEETIIQVLTNLLSNSVKFSHAGTKVEIYVTMGDKEIIVAVKDYGKGVPPHKL 910

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +  +++ ++  E I D        L 
Sbjct: 911 ETIFERFEQVDVSDSRQKGGTGLGLAICKNIVQKHQGKIWVESILDSGSTFYFTLP 966


>gi|229145233|ref|ZP_04273623.1| hypothetical protein bcere0012_23900 [Bacillus cereus BDRD-ST24]
 gi|228638244|gb|EEK94684.1| hypothetical protein bcere0012_23900 [Bacillus cereus BDRD-ST24]
          Length = 438

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 72/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 206 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 265

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 266 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 325

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++  GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 326 NKQHFQQCFLNLIKNSIEAMSNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 384

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 385 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 429


>gi|218533351|ref|YP_002424166.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|218525654|gb|ACK86238.1| histidine kinase [Methylobacterium chloromethanicum CM4]
          Length = 676

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
           + +     + S  L ++  + + + H+I +PI  I  +LE+  E              LI
Sbjct: 437 LEETRRQLVMSEKLASIGEITAGVAHEINNPIAVIQGNLEVAREVLGPAGEEVRTEFDLI 496

Query: 54  RLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                   + +  +                V + +    +  V       D  ++   T 
Sbjct: 497 DQQVHRVNMIVTRLLQFARPDEYAGYVETVVPAEVVTDCLVLVRHLLERADVAIEREDTA 556

Query: 107 EKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
            +          ++++NL + A  ++P GG + +  QD+           +   G     
Sbjct: 557 TRTVEISRTELQQVVINLMVNAIHAMPEGGLLRLKTQDNDYSGREGVAIEVSDTGVGIPA 616

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         T     +       L       +      +   +    L 
Sbjct: 617 DRLRKIFDPFFTTRTHGGTGLGLSISYTLIARYGGTITVHSELERGSIFVIRLP 670


>gi|220915791|ref|YP_002491095.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953645|gb|ACL64029.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 373

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 76/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +A+     L S  L A+  L S + H++ +P+GAI    EL        E    D+++  
Sbjct: 134 LAEARASWLRSEQLAAVGRLASGVAHEVGNPLGAIAGYAELARGRIRAGEAAQADDLVAR 193

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGE 107
           I + +      ++ +      +    + I L                  D R ++    +
Sbjct: 194 IAVEAGRIDAIVRDLLELARPSAPAVAPIALSGPVDAALRLARVQARLRDVRAELDLPAD 253

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +    A++ LNLF+ A  ++   G + ++ ++ ++     +   G      +  
Sbjct: 254 LPPVLADEARLAQVFLNLFLNAGDAMGGRGTLRVTAREVQDRVEIDVADQGPGIGPEDLP 313

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ D    +        +       L       +          V    L +
Sbjct: 314 -RVFDPFFTTKPPGAGTGLGLSVSHRLMEAMGGAISAANAPGGGAVFRLRLRR 365


>gi|78223759|ref|YP_385506.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter metallireducens GS-15]
 gi|78195014|gb|ABB32781.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter metallireducens GS-15]
          Length = 363

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM--------S 59
            +  L  L  L + + H+I +P+G I  + +LL+     +  ++      +         
Sbjct: 131 HADRLSTLGTLAAGLAHEIKNPLGGIKGAAQLLEMELPPESELRDNVRVVVREVDRVNRI 190

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRER--- 115
               L            V+    LGDI  + +          Q  +      +  +    
Sbjct: 191 VEELLALSSPRKLQLTKVNLHKILGDIVTLRKRATEGKSVTFQQQFDPSIPPILADEGLL 250

Query: 116 AKILLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFPEK 163
            ++ LNL   A  ++   G             +T   +         ++ +G      E+
Sbjct: 251 TQLFLNLIKNAVEAVDERGTIRVASRVLSDYSMTPKGERRSRMVAVDVRDDGPGI-PREQ 309

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             Q+      +      +       +  E++  L  E         + +L 
Sbjct: 310 LEQLFTPFFTTKAKGTGLGLAICQKIVTEHRGMLKVESDPGTGTTFTVMLP 360


>gi|229102594|ref|ZP_04233298.1| hypothetical protein bcere0019_17520 [Bacillus cereus Rock3-28]
 gi|228680821|gb|EEL34994.1| hypothetical protein bcere0019_17520 [Bacillus cereus Rock3-28]
          Length = 351

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 73/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLAEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSGGTITIRLKEHETVVQVHIRDSGIGISEEQKQHV 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  + +       + K
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHEGEIKVESEEGNGTEFIVCIPK 347


>gi|188582205|ref|YP_001925650.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179345703|gb|ACB81115.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 622

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 67/240 (27%), Gaps = 27/240 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            K++   L  S  + AL  L   I HD  + + AI  SLEL    + +      ++    
Sbjct: 246 QKSLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELVGPKIADQPRVKRLVDNAT 305

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            ++          L F R    +   VD    +  +  +    +    RV+         
Sbjct: 306 GAAQRGSALTKRLLSFSRSNDAHARPVDPNALIEGMSALFGSSLGSLVRVERDLEPGMPF 365

Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157
              +  ++ L +  +   +               R               + ++   G  
Sbjct: 366 ALVDPDQLELAVLNLCINARDAMPDGGTVTISTRRAEIHDDPDLKPGTYAVVTVADEGTG 425

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   ++ +    +        +    V  LA +   RL           +   L +
Sbjct: 426 I-PPEILERVCEPFFTTKAVGQGTGLGLAMVFGLAQQAGGRLRITSEVGQGTRIELALPR 484


>gi|308535166|ref|YP_002137294.2| GAF domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|308052511|gb|ACH37498.2| LOW QUALITY PROTEIN: sensor histidine kinase response regulator,
           GAF domain-containing protein [Geobacter bemidjiensis
           Bem]
          Length = 837

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 74/242 (30%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           M + +  +    + +  L S + HD  + + AI     L    LD   I  + +  +  +
Sbjct: 444 MTEQLRQS-QKREAIGELASGVAHDFNNLLTAIIGFASLAQANLDPGTIPFQYLDEVLNA 502

Query: 57  SMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           S  A    + +    R        VD    +G +E+++   I+    ++VS   E   + 
Sbjct: 503 SERATYLTRGLLAFGRNQAANPQPVDLNRIVGQMEKLLGRLISRQIELKVSLCHESPTVL 562

Query: 113 RER---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154
            +     ++++NL   A  ++                        V+        S++  
Sbjct: 563 ADAGQLDQVVMNLATNARDAMNNAGVLTIETAVVTFPPDSDRAHGVKRGGRYARLSVRDT 622

Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G       +  ++ +    +        +    V  +  +N   +  E            
Sbjct: 623 GRGMDEATRG-RLFEPFFTTKETGQGTGLGLAIVQGIVQQNGGFIEVESTPGEGACFLIH 681

Query: 213 LE 214
           L 
Sbjct: 682 LP 683


>gi|261418255|ref|YP_003251937.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767785|ref|YP_004133286.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374712|gb|ACX77455.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112651|gb|ADU95143.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 582

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 59/220 (26%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK---FMRL 69
             + + H++ +P+ +I    E L      +    +  + +I   S      ++    +  
Sbjct: 361 FVANVSHELKTPVTSIKGFAETLLDGAMKDEAALEHFLTIILKESERLQTLVEELLDLSK 420

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLN 121
              +   +                +   K  +                       +ILLN
Sbjct: 421 IEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLVIRGDRNRMKQILLN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A    P  G+V +  ++++ E +  +K  G      E   +I +            
Sbjct: 481 LLANAITYTPEHGRVAVEAEETEKEVLIHVKDTGIGIEEKEIP-RIFERFYRVDKARSRD 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  L   +   +          V +    K
Sbjct: 540 SGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579


>gi|218232135|ref|YP_002367377.1| sporulation kinase B [Bacillus cereus B4264]
 gi|218160092|gb|ACK60084.1| sporulation kinase B [Bacillus cereus B4264]
          Length = 389

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 157 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 216

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 217 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 276

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 277 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 335

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 336 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 380


>gi|108759236|ref|YP_635471.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108463116|gb|ABF88301.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 842

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 77/236 (32%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
           ++I    +   +     S + H++ +P+ +I  SL LL+            +++++ R +
Sbjct: 341 RDITERKAVERMKNEFISTVSHELRTPLTSIRGSLGLLEGGIVGDIPPQALDMVRIARTN 400

Query: 57  SMSAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I  +  +                     D +       + + D   V    +V+ T
Sbjct: 401 TERLIRLINDILDLEKMEAGKLELKVSTPECADLVESAFASVRGMADGAGVSLHAEVTGT 460

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
            +         ++L NL   A    P+G  VT+ V ++      FS+   G      E+ 
Sbjct: 461 PQVKADRDRLVQVLTNLVSNAVKFSPQGAGVTVRVGEEEDGRVRFSVVDQGPGI-SQEQR 519

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++             +     +       +  ++  R+  E  +      +  LE
Sbjct: 520 ARLFGRFQQLDSSDTRSKGGTGLGLAISQAIVEQHGSRITVESEEGRGSTFTFTLE 575


>gi|23099135|ref|NP_692601.1| sporulation kinase C [Oceanobacillus iheyensis HTE831]
 gi|22777363|dbj|BAC13636.1| sporulation kinase C (sensor kinase) [Oceanobacillus iheyensis
           HTE831]
          Length = 364

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 67/218 (30%), Gaps = 9/218 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +++      M++   L + I H+I +P+ ++   L+LL      +      +++ I    
Sbjct: 147 EDMMVRSEKMNVAGQLAAGIAHEIRNPLTSLKGFLQLLQAGVNHKEEYFKIMIEEIEKIE 206

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                 L   +              + D+  ++           V        +  +R++
Sbjct: 207 SITSELLFISKPLTDNRTDEIISDMINDVIMLLSPQAKQKNIRIVKLGVCNQTIVCDRSQ 266

Query: 118 ILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
           I   L      A  ++  GG++ I+ +D ++  I S+   G          ++ +    +
Sbjct: 267 IKQVLINLVKNAIEAMDNGGEIIITSEDVEDNVIVSVIDEGIGIPEG-ILHKLGEPFFTT 325

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 +       +   +          D       +
Sbjct: 326 KQTGTGLGLLITKQILEAHNANFEVSNNHDKGSTFKLV 363


>gi|114049449|ref|YP_739999.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           sp. MR-7]
 gi|113890891|gb|ABI44942.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           sp. MR-7]
          Length = 711

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAESVKEEIDLV 511

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K+      +++ 
Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++               QD        ++  G+   
Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWLQQDMPIGVKIEVEDEGSGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+  +I D    +  D   +       +       +    +     + +  L
Sbjct: 631 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684


>gi|296503213|ref|YP_003664913.1| sporulation kinase B [Bacillus thuringiensis BMB171]
 gi|296324265|gb|ADH07193.1| sporulation kinase B [Bacillus thuringiensis BMB171]
          Length = 422

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 249

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 250 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 413


>gi|262383741|ref|ZP_06076877.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262294639|gb|EEY82571.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 483

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 51/227 (22%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K+   +L    L +   + + H+I +P+ AI    ++L      +   Q I +   +  
Sbjct: 253 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 308

Query: 62  IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
                      +  +          D        +        + K V++          
Sbjct: 309 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISKNVRLILDDSPNVSL 368

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +   IL  L   A     +G               F +   GN     +      
Sbjct: 369 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 428

Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       L       +     +      S  L 
Sbjct: 429 RFVQLNEFQPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 475


>gi|258515159|ref|YP_003191381.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257778864|gb|ACV62758.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 535

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 68/224 (30%), Gaps = 13/224 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + I   L  ++LV  + + I H++ +P+  +   L+LL +     +      L     
Sbjct: 308 MEQEIA-RLDRLNLVGEMAASISHEVRNPMTTVRGFLQLLQKKEDCKKYNDYFNLMIEEL 366

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKID 110
                 +             + + +I  V                   ++++S       
Sbjct: 367 DRANSIITEFLSLAKDRPLDLIMNNINSVVEILQPLIIAHAVLYDTTVKIELSEIPNLYL 426

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +E  +++LNL      ++  G  +TIS     +  I ++   G      E    I   
Sbjct: 427 DEKEIRQLILNLVRNGLEAMSPGKTLTISTYIENDTVILAVGDQGEGI-KSEIMAMIGTP 485

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +A  +  R+  +  D          +
Sbjct: 486 FFTTKEQGTGLGLAVCYRIAARHNARINIK-TDSTGTTFEVRFK 528


>gi|255280496|ref|ZP_05345051.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255268961|gb|EET62166.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 395

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 69/243 (28%), Gaps = 28/243 (11%)

Query: 1   MAKNI----CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           M + +       +        L S I HD+ +PI AI   +E + +         D  ++
Sbjct: 149 MRRRLYESNEEKIQYDRESKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDHYIR 208

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------------K 98
            I   +      +  +        +               +    +              
Sbjct: 209 TIYNKANDMDRLINELTFYSKIDTNRIPYTFNKINVSSYFEDCCEEVGLDLESKNIDFSY 268

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNL 157
              V    E I  + +  +++ N+   +   + +   ++ I V+D  +     ++ NG  
Sbjct: 269 FNYVDENVEVIADAEQMKRVINNIIGNSIKYMDKPKGRINIRVKDVGDFVQIEIEDNGRG 328

Query: 158 ARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               E    F +    +           I    V  +  ++  ++          V+  +
Sbjct: 329 IGPKELPYIFDRFYRTDASRNSSMGGSGIGLSIVKKIVEDHGGKIWATSKPGTGTVMYFV 388

Query: 213 LEK 215
           L K
Sbjct: 389 LRK 391


>gi|57233903|ref|YP_182005.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57224351|gb|AAW39408.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 394

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K++     S  L ++  L + + H+I SP+ +I    E L      +E  + I     
Sbjct: 130 LEKDLNL---SSRLASVGALTAGVAHEINSPLTSILGFSERLARKCTSEEQHRDIERIHT 186

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107
            A+           F R              +    ++ E  + V   V           
Sbjct: 187 EALRAAKVIDNLRTFARSYQQEKKLCGLNEIIRKSVELREYELVVQNIVVELELAENLPA 246

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKF 164
            +    +  ++L+N+ + A  ++ +           Q+  N     ++ NG     PE  
Sbjct: 247 TLLDFYKIQQVLVNMILNAEQAMYQAHGRGRLLIKTQNMGNYIRMIIEDNGPGI-SPEIA 305

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +  D     +       +  E+  ++  E            L 
Sbjct: 306 EKVFDPFFTTKEDSRGTGLGLSVCYGIIMEHDGKIQLESKLGQGTRFIIDLP 357


>gi|39996044|ref|NP_951995.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982809|gb|AAR34268.1| sensor histidine kinase, putative [Geobacter sulfurreducens PCA]
 gi|298505066|gb|ADI83789.1| nitrogen fixation transcript antitermination sensor histidine
           kinase [Geobacter sulfurreducens KN400]
          Length = 248

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 66/225 (29%), Gaps = 18/225 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61
           +     +  +  L  + + + H++ +P+  I ++ ++ L E G+ D V +++   +  A 
Sbjct: 20  LELLAFNEKMAELGRMAAGVVHELNTPLSVIVSATQMILREEGLPDFVREMVERVNQEAH 79

Query: 62  IRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-- 112
                        R         D    L +   ++           +     ++     
Sbjct: 80  RLSDMTKGVLSFTRRDVSDHQEADVNQVLREAMTLLRYEAHKRSIAVIEDLDYRLPFIAA 139

Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVD 169
                 ++++NL M A  ++  GGK+ I    +        +   G      E    I  
Sbjct: 140 DANRAKQVIINLVMNALQAMGEGGKLFIRTSQNGEGGVTVQVTDTGPGI-PAELLGHIFT 198

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    +   +  +    L       +  E         +  
Sbjct: 199 PFFTTKEPGEGTGLGLFITRKLMESVGGAIAVESTVGEGTSFTLT 243


>gi|20090015|ref|NP_616090.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19914982|gb|AAM04570.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 849

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 33/245 (13%)

Query: 3   KNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEV---GIEDEVMQ 51
           K     +    + A   +R        + H++ +P+ A+    +LL       + ++  +
Sbjct: 571 KQAEEKMLQAKMAAEAANRAKINFIVNMSHELRTPLNAVIGFSDLLLSETAGPLNEKQKR 630

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                S S    L  +      +      I L      I   I   +RV  S + EK   
Sbjct: 631 YTENISKSGSHLLDVINDVLDISRLELGNIELYYETVDIPGVIEEVRRVLSSLSAEKNIR 690

Query: 112 SR---------------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                            +  +IL NL   A       GKV I  +   +    S+K  G 
Sbjct: 691 IEYKVEQGLKTIDVDRVKFKQILYNLLNNAIKFSSEDGKVNIKARSEGDMVEISVKDEGI 750

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                + + ++          +        +    V      +  ++  E         +
Sbjct: 751 GINEAD-YARVFLPFVQIDESISRKHGGVGLGLALVKRFVELHGGQVWVEASPGKGSTFT 809

Query: 211 ALLEK 215
             + K
Sbjct: 810 FRIPK 814


>gi|229095038|ref|ZP_04226034.1| hypothetical protein bcere0020_2960 [Bacillus cereus Rock3-29]
 gi|228688368|gb|EEL42250.1| hypothetical protein bcere0020_2960 [Bacillus cereus Rock3-29]
          Length = 671

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E  I ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEENIYEKHNKYFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +     + ++         +V  +   E +   
Sbjct: 506 SNSIITEFLSMGNTKKSDLQMLDLNLIIHDTIPLIKIDTHNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGQVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|229113991|ref|ZP_04243417.1| hypothetical protein bcere0017_2970 [Bacillus cereus Rock1-3]
 gi|228669450|gb|EEL24866.1| hypothetical protein bcere0017_2970 [Bacillus cereus Rock1-3]
          Length = 672

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E  I ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEENIYEKHNKYFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +     + ++         +V  +   E +   
Sbjct: 506 SNSIITEFLSMGNTKKSDLQMLDLNLIIHDTIPLIKIDTHNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGQVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|224535278|ref|ZP_03675817.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224523086|gb|EEF92191.1| hypothetical protein BACCELL_00139 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 755

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 58/235 (24%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA+ +       +L   L     + + H+I +P+ AI    ELL +    DE  +   + 
Sbjct: 378 MAQELKEMKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELLVDSDDPDEKKEYWHII 437

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +  +                 +        +      ++  ++   I       V   
Sbjct: 438 ESNNDLLLRLINDILDLSKIESGIIDRKRERFNLTQLCNELYVMMRSKIPNADVELVQDN 497

Query: 106 GEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +N    A       G + +     K+   F ++  G      
Sbjct: 498 PCPECWIFLDSNRLKQVWMNFLTNAVKYTRS-GYIRMGYSVEKDGIRFYVEDTGTGI-PK 555

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++          +    +       +       +             A + 
Sbjct: 556 ELQDRVFGRFQKLNEFVQGTGLGLAISRAIVEAAGGEIGFTSEQGIGSTFWAWVP 610


>gi|206889948|ref|YP_002248935.1| two-component sensor histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741886|gb|ACI20943.1| two-component sensor histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 536

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 67/222 (30%), Gaps = 12/222 (5%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                L     +A +   + H+I +P+ AI  S   L      + + + + +        
Sbjct: 312 KEKLRLEKSSAMAEMAMTVAHEIKNPLNAIKASTSYLKANFQGEVLKEFLSIIDKETERL 371

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSRER 115
            + +     Y   V      G+I          V  +    +K +Q  +     +   + 
Sbjct: 372 NELITSFLSYARPVPLKYEKGNINNALKDVIKLVETEIKEENKILQTDFDPSIPEFYFDH 431

Query: 116 AKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +I   +      A  +  +G  + I  +    +   ++K +G      E   +I +   
Sbjct: 432 HQIKQAVLNLLVNATDATEKGDTIMIKTERIDGKIKITIKDSGTGI-PEELMGKIFEPFF 490

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  +  +++  +      +     +  L 
Sbjct: 491 TTKTTGSGLGLACVERIIKDHEGNIKVTSKLNEGTEFTIELP 532


>gi|117926550|ref|YP_867167.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610306|gb|ABK45761.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1691

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 62/254 (24%), Gaps = 41/254 (16%)

Query: 1    MAKNICFNLSSMDLV------------------ALLCSRICHDIISPIGAIHNSLELLDE 42
            + K +    + ++L                   +   + + H+I +P+ AI  + ELL E
Sbjct: 1283 LEKQVRMRTAELELATREAELRKDEAEAGNRAKSEFLAIMSHEIRTPLNAILGTHELLSE 1342

Query: 43   VGIEDEVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDI 86
              +  E  +L+ +S  +  +                    +         +   I     
Sbjct: 1343 SALSSEQQRLMEISRNAGELLLNLVNETLDLAKIEAGKLDLEYTIFDLPRLVEEITQIKR 1402

Query: 87   EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE 146
                   + ++  + +      +       +IL+NL   A      G       +   + 
Sbjct: 1403 VAAEHKGVRLESEMALEVPRFVMGDPDRLRQILVNLLSNAIKFTNSGTVSLQMSRGVADR 1462

Query: 147  NIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPE 200
              F +   G          +I                   +       L       +  E
Sbjct: 1463 TFFKVSDTGVGI-AAHSMEKIFHPFTQADTSTTRKFGGTGLGLTICKHLCEAMGGDIQVE 1521

Query: 201  IIDDHNVVLSALLE 214
                     S  L 
Sbjct: 1522 SQVGVGSTFSVNLP 1535



 Score =  105 bits (262), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 64/243 (26%), Gaps = 31/243 (12%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K++   LS+ +  +       + + H+I +P+ A+    +L     +  +V   +  +
Sbjct: 385 LLKSLEETLSAAESASKAKSAFIANMSHEIRTPMNAVLGFTDLALRGDLSPKVRDYLEKT 444

Query: 57  SMSAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVD-----KRV 100
             ++   +  +     +               D    L  +  +     A          
Sbjct: 445 KNASHSLMGIINDILDFSKMDVGRLELDPVKFDLHFLLERLADLFSKQAADHAVDLVFLA 504

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGN 156
            +++       +    +I +NL   A      G     +  +     +     S+  +G 
Sbjct: 505 PLNFNQVLYGDAMRLEQIFINLIRNAVKFTKNGFITVRAQPELLEGHRVRLTCSVSDSGI 564

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               PE+   +                   +    V  L       +  E          
Sbjct: 565 GI-DPEQLPHLFAPFVQADSSTTRRFGGTGLGLSIVKRLVSLMDGSVWAESEPGKGSQFH 623

Query: 211 ALL 213
             +
Sbjct: 624 FEI 626


>gi|229079823|ref|ZP_04212355.1| hypothetical protein bcere0023_24750 [Bacillus cereus Rock4-2]
 gi|228703407|gb|EEL55861.1| hypothetical protein bcere0023_24750 [Bacillus cereus Rock4-2]
          Length = 360

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|229163665|ref|ZP_04291613.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803]
 gi|228619802|gb|EEK76680.1| hypothetical protein bcere0009_44310 [Bacillus cereus R309803]
          Length = 484

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 73/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTG 106
            +      +  + L              +V+  + + + IE++  D       + +    
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEIHLQLHA 360

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
               ++ +     +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPQYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   L+K
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLKK 478


>gi|302341533|ref|YP_003806062.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301638146|gb|ADK83468.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 993

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           +        M+ +  L   + HD  + + AI    +L+      D+ ++          R
Sbjct: 611 QAQLQRAQRMEAIGTLAGGVAHDFNNILQAISGYTQLIGGHPGLDQKVRRYAEDIDLAAR 670

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            ++      L F R        VD    +     ++E  I    R+      +   +  +
Sbjct: 671 RATDLVKRLLTFSRKVEPALQKVDLNRQIDHAVAMLERTIPKMVRITTRLDPDLKAVKAD 730

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTI---------------SVQDSKNENIFSLKINGN 156
                ++L+NL   A  ++P GG++ I                   +    +  +  +G 
Sbjct: 731 PGQMEQVLMNLGTNARDAMPEGGELMIETQNVRAEDLSPGAACQLTADEYVMLRVSDSGM 790

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I D    +        +    V  +   +  R+          V    L 
Sbjct: 791 GM-DAETQKKIFDPFFTTKGVGQGTGLGLSIVYGIIEGHGGRISCYSQPGQGTVFEICLP 849


>gi|283836742|ref|ZP_06356483.1| sensor protein ZraS [Citrobacter youngae ATCC 29220]
 gi|291067295|gb|EFE05404.1| sensor protein ZraS [Citrobacter youngae ATCC 29220]
          Length = 461

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 70/228 (30%), Gaps = 17/228 (7%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRL 55
           K +   +     L+AL  L + + H+I +P+ +I        E     G   E+ Q++  
Sbjct: 228 KELQDAMKRKEKLMALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAK 287

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT-----GE 107
            +      +  +             + L +            A  + +Q+ +        
Sbjct: 288 EADRLNRVVSELLELVKPAHLTLQQVDLNEAITHSLHLVSQDAASREIQLRFAANSTLPT 347

Query: 108 KIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++LLNL++ A  ++ R       + + S       +  +G      E+   
Sbjct: 348 IQADPDRLTQVLLNLYLNAIHAIGRQGTITVEARESSAERVKIVVIDSGKGI-AAEQLET 406

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +  D   +    V  +  ++   +    ++      +  L 
Sbjct: 407 IFTPYFTTKADGTGLGLAVVQNIIEQHGGTIQVASVEGKGATFTLWLP 454


>gi|253700851|ref|YP_003022040.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
 gi|251775701|gb|ACT18282.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
          Length = 552

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----------EVM 50
           K     + S  +VAL  + + + H++ SP+  I  + ++L     ++          +++
Sbjct: 312 KMEAQLVQSAKMVALGVMAAGVAHELNSPMTVIIGTAQMLAREMQQEGDSEGAEALSDII 371

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R        +D    +  +  +I+  I   +          + 
Sbjct: 372 NCGLRCKRIIQNLLTFSRQDQVPVMEIDLNAEVERVLDMIQYQINRSQIAIFEHFNRDLP 431

Query: 111 LSR----ERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLA 158
           +      +  ++L N  + A  +L         ++          +   + S+  NG   
Sbjct: 432 MMNANGPQIQQVLTNFLINARDALAEVEGKEKVIEVSTALRVEGERRFAVLSVADNGVGI 491

Query: 159 RFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E  ++I      S        +     + +A  +  R+  +         S +L 
Sbjct: 492 -AKENISKIFTPFYTSKEASKGTGLGLSVSLGIAESHNGRIEVDTELGQGSCFSLILP 548


>gi|114765347|ref|ZP_01444464.1| phosphate regulon sensor histidine kinase, putative [Pelagibaca
           bermudensis HTCC2601]
 gi|114542327|gb|EAU45356.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. HTCC2601]
          Length = 346

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 13/240 (5%), Positives = 57/240 (23%), Gaps = 33/240 (13%)

Query: 9   LSSMDLVALL----CSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS 59
           ++ ++    +     + + H++ +P+ A+   +E L     ++    D  + ++   +  
Sbjct: 105 ITHLEQAGQMRRDFVANVSHELRTPLTALLGFIETLRGPAREDAAARDRFLGIMEDEAGR 164

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKID 110
               +  +                              +          ++       ++
Sbjct: 165 MERLVGDLLSLSRVEAEERVRPTEPVDLAGLVRSAIRGLAPLAEDAGVTLETDAPEAVLE 224

Query: 111 LSRERAKILLNLFM---VAHASL-------PRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +  ++   +                      +     +        ++   G     
Sbjct: 225 VPGDADQLRQVVVNLIENGVKYSGRGAEVRVHLAEPAYQPRLRGQGVELAVTDTGPGINP 284

Query: 161 PEKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +      +    +    +    V  + + ++ RL  E           LL +
Sbjct: 285 IHIPRLTERFYRVDSHRAREMGGTGLGLAIVKHIINRHRGRLKIESAPGKGTTFRVLLPR 344


>gi|260777312|ref|ZP_05886206.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260606978|gb|EEX33252.1| hypothetical protein VIC_002706 [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 882

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 58/237 (24%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     ++  + + H+I +P+  I    E+L +  +      ++    +S+ 
Sbjct: 377 AKENAEAANQAK--SVFLANMSHEIRTPLNGIMGMTEILSDSRLNSSQKDILSDIDVSSH 434

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105
             L  +      +      + L      + + +     +                     
Sbjct: 435 ALLVLINDILDLSKIESGNLTLSPSHADVREAVFEAMNMVSTKALKQQVELRATLSPDIP 494

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPE 162
                      +IL+NL   A      G    +    ++        S+   G      +
Sbjct: 495 DSLYIDEFRFKQILMNLLSNAVKFTQDGSVSVVVKLMNEGEKAYLHCSVVDTGVGINEEK 554

Query: 163 KFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       G++        +       +A      +            S ++ 
Sbjct: 555 LEEIFEPFTQEDGSITRRYGGTGLGLAICRQIAELMGGSITASSTPGLGSRFSFVIP 611


>gi|229182984|ref|ZP_04310216.1| hypothetical protein bcere0004_5630 [Bacillus cereus BGSC 6E1]
 gi|228600441|gb|EEK58029.1| hypothetical protein bcere0004_5630 [Bacillus cereus BGSC 6E1]
          Length = 463

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 62/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E     + ++ + +    +      ++  F   
Sbjct: 237 SEFLASVAHELRTPLTYVRGYADIALKETTSPKQRLRYLSIIKDESDYITNLVQDLFSLA 296

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 297 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 356

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 357 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 416

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 417 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 455


>gi|149179489|ref|ZP_01858038.1| probable two-component sensor histidine kinase FixL [Planctomyces
           maris DSM 8797]
 gi|148841676|gb|EDL56090.1| probable two-component sensor histidine kinase FixL [Planctomyces
           maris DSM 8797]
          Length = 520

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 26/238 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-------------EVGIED 47
           +     + S  L  +  L + + H+I +P+ AI  + E L              +  + +
Sbjct: 275 ERSKQLVRSERLAGIGVLAAGVAHEINNPLSAISMASESLQGRIVDLKPHCEDADFEVVE 334

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRV 100
           + + LI+  SM        +        SV S          +  +  +I+     +   
Sbjct: 335 QYLSLIQRESMRCREITSKLLDFSRGQNSVRSQNDLVGVIDEVCSMVNLIKRLKGRNIHF 394

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            V           E  +++LN+   A  S+  GG + I V++  +      + +G     
Sbjct: 395 SVRNPCCAEFNPAEIKQVVLNIMTNALESMEVGGNLEIEVREHVDSVTLIFRDDGRGM-T 453

Query: 161 PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215
            E    + D       D     +       +  ++   +  E         +   L K
Sbjct: 454 QEVKESLFDPFFTQRADGTGTGLGMSITHRIVKDHGGEIEVESPGPGQGSTIFVELPK 511


>gi|288924824|ref|ZP_06418761.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
 gi|288338611|gb|EFC76960.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           buccae D17]
          Length = 884

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +    ++  L     + I H++ +P+  I + +E + +        + + L     
Sbjct: 363 MRRRLEEEATNAKL--QFFTNISHELRTPLTLIADPVEHIIDDDNLTRQQRNMLLIVRRN 420

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------------RVQVSWT 105
           +  L  +         + +      +                            +  +  
Sbjct: 421 VNVLTRLVSEILDFRKIQNGKMTLTLSDFDLAVYMRQWLDVFATTAGKKKISLELHAASP 480

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  +I  NL   A    P GG++T S     +     +   G      E   
Sbjct: 481 LSIRADIYKVERICYNLLSNAMKYTPEGGRITFSAVTEGDFVHIGVTDTGIGMTRDEAAH 540

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            I    V   A  +K  +  E         +  L 
Sbjct: 541 VFERFYQVRHPHKGGTGIGLAIVKSFAELHKGTVAVESEPGRGSTFTVTLP 591


>gi|255014696|ref|ZP_05286822.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 491

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 51/227 (22%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K+   +L    L +   + + H+I +P+ AI    ++L      +   Q I +   +  
Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316

Query: 62  IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
                      +  +          D        +        + K V++          
Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISKNVRLILDDSPNVSL 376

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +   IL  L   A     +G               F +   GN     +      
Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436

Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       L       +     +      S  L 
Sbjct: 437 RFVQLNEFQPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 483


>gi|238892479|ref|YP_002917213.1| sensor protein ZraS [Klebsiella pneumoniae NTUH-K2044]
 gi|238544795|dbj|BAH61146.1| sensor kinase of Zn/Pb responsive two-component regulatory system
           [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 464

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQ 51
            ++    L +      LVAL  L + + H+I +P+ +I        E     G   ++ Q
Sbjct: 223 RRSRKQLLEAMARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTSPGGESHQLAQ 282

Query: 52  LIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
           ++   +          L+ +R A     +VD    +    Q++           +     
Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQTVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                        ++LLNL++ A  ++ R G + ++  ++  +     +  +G      E
Sbjct: 343 ELTTISADPDRLNQVLLNLYLNAMQAIGRDGVIRVTASEADRQRVKIVVTDSGKGMSDEE 402

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I      +  D   +    V  +  ++   +  E       + +  L 
Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453


>gi|228987920|ref|ZP_04148028.1| hypothetical protein bthur0001_45870 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228771843|gb|EEM20301.1| hypothetical protein bthur0001_45870 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 484

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K         N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVSIDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|254513976|ref|ZP_05126037.1| sensor protein GacS [gamma proteobacterium NOR5-3]
 gi|219676219|gb|EED32584.1| sensor protein GacS [gamma proteobacterium NOR5-3]
          Length = 508

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 20/252 (7%), Positives = 64/252 (25%), Gaps = 38/252 (15%)

Query: 1   MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           M+  +   +                 +   + + H++ +P+ AI    E+L +   ++  
Sbjct: 247 MSDKLRRAIDEEKDAKLSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDETP 306

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
           +   +  +    I L   +L       +D          ++++     + + ++      
Sbjct: 307 IDRKQYQNDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVKEQFHPGEALTMAVDALAP 366

Query: 106 -----------------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NEN 147
                                + + +  +I++NL   A      G     +         
Sbjct: 367 LLRRNGNVLQCDDFSTLPMINNDAVKFRQIIVNLLSNAAKFTAEGMIRVSASFTQATQHL 426

Query: 148 IFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEII 202
             ++   G      +    F   V  +  ++       +              ++     
Sbjct: 427 EITVSDTGIGMTPEQQALVFEAFVQADDATSNTYGGTGLGLAICRDFCELMGGQISVASE 486

Query: 203 DDHNVVLSALLE 214
                  +  L 
Sbjct: 487 PGEGSTFTVSLP 498


>gi|150008868|ref|YP_001303611.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937292|gb|ABR43989.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 491

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 51/227 (22%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K+   +L    L +   + + H+I +P+ AI    ++L      +   Q I +   +  
Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316

Query: 62  IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
                      +  +          D        +        + K V++          
Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISKNVRLILDDSPNVSL 376

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +   IL  L   A     +G               F +   GN     +      
Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436

Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       L       +     +      S  L 
Sbjct: 437 RFVQLNEFQPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 483


>gi|117922506|ref|YP_871698.1| ATPase domain-containing protein [Shewanella sp. ANA-3]
 gi|117614838|gb|ABK50292.1| ATP-binding region, ATPase domain protein domain protein
           [Shewanella sp. ANA-3]
          Length = 711

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDNAESVKEEIDLV 511

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K+      +++ 
Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++               QD        ++  G+   
Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWLQQDMPIGVKIEVEDEGSGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+  +I D    +  D   +       +       +    +     + +  L
Sbjct: 631 APEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684


>gi|118578514|ref|YP_899764.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118501224|gb|ABK97706.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 748

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +N   N   ++ + +L   I HD  + +  I  ++ +    L   G  D+++     +++
Sbjct: 368 QNRLLNAQRLESLGVLAGGIAHDFNNILTGIMGNISMARMVLAMPGKSDKLLDNAEKAAL 427

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLSR 113
            A      +         V   + +  I             V+          +      
Sbjct: 428 RATELATQLLTFAKGGAPVKKTVSIRKIVDESLSLAIRGTNVKGVVQLPDSLHDIEADEG 487

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLARFP 161
           + +++  N+ + A  ++P GG++++   +              +    S    G      
Sbjct: 488 QVSQVFNNIVINAVQAMPGGGEISVHGMNVVLGSENRFILPPGDYVKLSFTDQGCGM-PE 546

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D    +      +    V  +   +   +            + LL 
Sbjct: 547 DVRKKIFDPYFTTKSHGMGLGLASVHSIVKRHGGYIDVRSTIGEGTTFTLLLP 599


>gi|315185412|gb|EFU19184.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta thermophila DSM
            6578]
          Length = 1278

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 58/240 (24%), Gaps = 26/240 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +       +M   +   + + H+I +P+ AI    +LL       +    +     S 
Sbjct: 784  LKEAKEEAERAMRAKSEFLANMSHEIRTPLNAIIGFTDLLASSFPSGKEASYLDAIRSSG 843

Query: 61   IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104
               L                       VD    + +I  +    +       +     + 
Sbjct: 844  KNLLMLINDILDLSKIEAGKMTLSYSPVDLRSFIEEIANIFRTQVENKGLSFILDYAPAL 903

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLAR 159
                        ++L NL   A     +G            ++SK +   S++  G   R
Sbjct: 904  PPTVEIDELRLRQVLFNLIGNAIKFTEQGHVKVQVRGTLHTEESKVDLTISVEDTGIGIR 963

Query: 160  FPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+       +              +       L       +  E         +  + 
Sbjct: 964  PEEREAIFQSFHQSSGQDSRKYGGTGLGLTISKRLVEMMGGTISVESEYGKGTTFTVRIP 1023


>gi|225866653|ref|YP_002752031.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225790643|gb|ACO30860.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 484

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   L+K
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478


>gi|197119089|ref|YP_002139516.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088449|gb|ACH39720.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 592

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 58/226 (25%), Gaps = 19/226 (8%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSA 60
             + S  + A   L + I H++ +P+  I    +L          ++    +I   +   
Sbjct: 361 QLVHSEKMAAFGSLGAGIAHEVKNPLAGILGITQLSLRGAGAGHPLEKNLLIIEKETKRC 420

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRER 115
              ++ +           S + L  +       V         +V+              
Sbjct: 421 KTIIEHLLKFARQEQVEFSEVDLQQVVADALAIVDHQLGINSIKVEQELEPGMPTCRGNA 480

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDG 170
            ++   L  +   +       T +V+ S            +  NG      E   +I D 
Sbjct: 481 NQLQQVLMNLMLNAQQAMSGKTGTVKLSGRRLEKGGVELRVADNGPGI-SKEIQGKIFDP 539

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +        +       +  ++   +  E  +         L 
Sbjct: 540 FFTTKPAGQGTGLGLSVTYGIVKDHGGEIHLESEEGLGTTFIITLP 585


>gi|53713792|ref|YP_099784.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216657|dbj|BAD49250.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 812

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  L +   + I H+I +P+ AI    +LL   D+   ++E  + I+ ++
Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
              +     +                 V        + Q + + +     +Q+       
Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPEGVELQIDEDSPLD 694

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    +++ N    A     RG        D++ +    ++  G      E   
Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHRGTITVGYRIDARQQLEMFVEDTGIGISI-ENQE 753

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  +  +S +    +       +  +    +               L 
Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804


>gi|206579291|ref|YP_002241056.1| sensor protein ZraS [Klebsiella pneumoniae 342]
 gi|206568349|gb|ACI10125.1| sensor protein ZraS [Klebsiella pneumoniae 342]
          Length = 464

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIR 54
            ++    L +      LVAL  L + + H+I +P+ +I    +   +      E  QL +
Sbjct: 223 RRSRQQLLEAMARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPPGGEAQQLAQ 282

Query: 55  LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
           + +  A    + +       R A      VD    +    Q++           +     
Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQPVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                   +    ++LLNL++ A  ++ R G + +S  ++  +     +  +G      E
Sbjct: 343 ELTTINADADRLNQVLLNLYLNAMQAIGRDGVIHVSASEADRQRVKIVVTDSGKGMSDEE 402

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I      +  D   +    V  +  ++   +  E       + +  L 
Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453


>gi|297563589|ref|YP_003682563.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848037|gb|ADH70057.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 723

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56
           MA+++   L        + S + H++ +P+  +   LE   +   + +  ++  L     
Sbjct: 474 MAEHLE-RLEKQRRA--MVSDVSHELRTPLSNLRGWLEAAQDGVADLDRERMGMLVGETL 530

Query: 57  --SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGEK 108
                            G        +  G + + + D   +       + V  +     
Sbjct: 531 LLQDIVDDLQDLALADAGKLRLSPEPVDAGALVEQVVDSQRLRAAGAGLRLVAEAGDVVV 590

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
           +       +++ NL   A    P  G VT+  + S  E +  +   G      +    F 
Sbjct: 591 VADRTRLVQVVGNLLGNALRHTPAPGTVTVRARRSGGEAVVEVADTGVGIPAEDLPHVFD 650

Query: 166 QIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +           +    V  L   +   +  E +       +  L 
Sbjct: 651 RFWRADKSRNRRTGGSGLGLAIVRNLVELHGGSVAVESVVGEGTTFTVRLP 701


>gi|20141027|sp|Q9APE0|ZRAS_KLEOX RecName: Full=Sensor protein zraS
 gi|12584124|gb|AAG59806.1|AF305914_1 HydH [Klebsiella oxytoca]
          Length = 462

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61
                    LVAL  L + + H+I +P+ +I    +   +    + E  QL  + +  A 
Sbjct: 229 QEATARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPADGEAHQLALVMAREAD 288

Query: 62  IRLKFM-------RLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSR 113
              + +       R A     SVD    +    Q++ +D  +    +  +       +  
Sbjct: 289 RLNRVVSELLELVRPAHLKYQSVDLNEVITHSLQLVSQDAASRAISLTFTAQPALCRIQA 348

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169
           +     ++LLNL++ A  ++ R G +T++V++  +     S+  +G      E+   I  
Sbjct: 349 DPDRLKQVLLNLYLNAVHAIGREGVITVAVRECGDGRVKVSVADSGKGM-TAEQLQAIFT 407

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  D   +    V  +  ++   +  E       + +  L 
Sbjct: 408 PYFSTKADGTGLGLAVVQNIVEQHGGTIDAESAPGKGALFTFYLP 452


>gi|298242874|ref|ZP_06966681.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297555928|gb|EFH89792.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 465

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA ++     S  L   L S I H++ +P+  I   LE   +     +  V+  I   +M
Sbjct: 228 MADSLE---RSEHLRRQLLSNIAHELRTPLTNIRGYLEAFQDQVITPDPAVIASIYEEAM 284

Query: 59  SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                +  ++               +    D +    +   +  +   +     ++    
Sbjct: 285 LLSRMVTDLQDLALAEAGQLRLQRVHIALEDVITKAINALSLQAENKKISFSANIAPNLP 344

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                ++   +I+ NL   A    P  G+V +S +  + E   S++ NG           
Sbjct: 345 LVEADAQRVGQIMRNLLNNAIKYTPEQGEVRVSARALQKEIQVSVRDNGMGIAAEHLPYI 404

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +    V  L   +  R+  E            L 
Sbjct: 405 FKHFYRADTSRTRETGGSGLGLAIVEQLVCAHGGRITVESYVGQGTCFIFTLP 457


>gi|52140833|ref|YP_085996.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51974302|gb|AAU15852.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 484

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
            +      +  + L      +            +    +  + ++ +S            
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKECIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|116621917|ref|YP_824073.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225079|gb|ABJ83788.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 650

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + +     LS   L +L  L   I HD  + +G+I    E+    LD+     E ++ I+
Sbjct: 268 LRRTQEEALSREKLDSLAVLTRGIAHDFNNLMGSILAEAEVADAELDQGLSPREELRQIK 327

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             ++         + +         +V     + ++ +++   I+    + V    +   
Sbjct: 328 RVAVRASEVVRELMIYSGQEHTSFETVKLSALVEEMLELLRVSISKRAVLHVDLRPDLPA 387

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLARFPE 162
           +     +I   +  +   +    G+    +            +     +   G      E
Sbjct: 388 VRGNPTQIRQIVMNLIINASQAIGEAHGEICVRTSLAPNSPHDYVRLEISDTGCGISDEE 447

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +I D         H +    V  +   +K  +              LL 
Sbjct: 448 R-AKIFDPFFTRKPGGHGLGLAVVQGIVAAHKGVINVMSKPGKGATFEVLLP 498


>gi|329735733|gb|EGG72014.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU028]
          Length = 610

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 65/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +    + + R  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEEGAWQDKELAPSFLSVTREETERMIRLVNDLLQLSK 440

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                D +        +  + I     +    T    ++ ++            ++  N+
Sbjct: 441 MDNESDQITKEIIDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 500

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A         V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 501 ITNAMKYSRGEKCVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|298375903|ref|ZP_06985859.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266940|gb|EFI08597.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 491

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 51/227 (22%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K+   +L    L +   + + H+I +P+ AI    ++L      +   Q I +   +  
Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316

Query: 62  IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
                      +  +          D        +        + + V++          
Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISENVRLILDDSPNVSL 376

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +   IL  L   A     +G               F +   GN     +      
Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436

Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       L       +     +      S  L 
Sbjct: 437 RFVQLNEFQPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 483


>gi|218264472|ref|ZP_03478305.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221965|gb|EEC94615.1| hypothetical protein PRABACTJOHN_04005 [Parabacteroides johnsonii
           DSM 18315]
          Length = 620

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 55/232 (23%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +       +  + +   + + H+I +P+ AI     LL +   + DE   L R +   
Sbjct: 385 LIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEKDLTDEEKDLFRNTINK 444

Query: 60  AIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 M   F      + L  +     ++        +     
Sbjct: 445 NSNLLLKLINDILELSRIESGRMSFTFDDCALNELLEEIYQTHHLLMPSNIRFLKEFQES 504

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       +++ N    A     +    +    +  + E    ++  G       +
Sbjct: 505 ELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGYVYKKEEKEAHIFVEDTGKGMSEEAQ 564

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       +A     R+     +      + ++ 
Sbjct: 565 KKVFERFFKADEFAQGTGLGLSICQTIAERLDGRITLASQEGKGSCFTLIIP 616


>gi|134299359|ref|YP_001112855.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134052059|gb|ABO50030.1| GAF sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 560

 Score =  120 bits (300), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 24/233 (10%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
               + S  L A+  + + + H++ SP+ AI    +LL            ++  I+    
Sbjct: 320 QSQLVQSAKLAAVGEMAAGVAHELNSPLTAILGDSQLLLRKFGQEHASYPMLVDIKNCGT 379

Query: 59  SAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
                    L F R    +  SV     + +   ++   I        +   +++     
Sbjct: 380 RCKRIIQNLLAFSRQEQYHNESVCLNQVVENSLALVSYQIEKTNIRIKTNIHQELSPILG 439

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEK 163
             ++  ++++N  + A  +L       I++           NE   S+K NG        
Sbjct: 440 NKQQLEQVVVNFLLNAKDALYGDPAGIITITTGSLPKDSEVNEVFISVKDNGCGIEQSNI 499

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +        +     + +A  +  R++ +         S ++ 
Sbjct: 500 S-KIFNPFFTTKENFKGTGLGLSVSLGIAQSHGGRIVVQSELGQGSTFSLIIP 551


>gi|310827230|ref|YP_003959587.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
 gi|308738964|gb|ADO36624.1| multi-sensor signal transduction histidine kinase [Eubacterium
           limosum KIST612]
          Length = 585

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 67/221 (30%), Gaps = 23/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +PI  I   +E +      +         +I   S      +  + +   
Sbjct: 361 FVANVSHELKTPITTIRGFIETIQENHITDEATLGRFYSIIADESERLTRLVNDILILSH 420

Query: 73  YTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
              +                ++ + DI ++  +   ++ R Q       I    +  +++
Sbjct: 421 LENNQRSGEDKREVIGVNQEILRIFDILKMTAESKRIELRYQKEGDISVIINPDDFRQMM 480

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
           +NL   A      GG+V +SV ++       ++  G      +    F +    +   + 
Sbjct: 481 INLVDNAIKYTDEGGRVDVSVYENGAHFCILVEDTGCGIPEEDIPRIFERFYRVDKSRSK 540

Query: 177 D--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +     +    V  +   NK  +               L K
Sbjct: 541 ENGGTGLGLAIVKHIVQNNKGTIEVTSSVGIGTTFKVTLPK 581


>gi|224370092|ref|YP_002604256.1| AtoS2 [Desulfobacterium autotrophicum HRM2]
 gi|223692809|gb|ACN16092.1| AtoS2 [Desulfobacterium autotrophicum HRM2]
          Length = 474

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 70/226 (30%), Gaps = 20/226 (8%)

Query: 6   CFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
              L    L      +L+   + H++ +P+  I  S ++L +      ++ ++Q I    
Sbjct: 244 QALLKQSALAERGKFSLM---VAHEVKNPLSIIKGSFQMLKKDFSLPHDNLMIQYIDDEV 300

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKI 109
                 ++   L       +   + L  + + I     V         K          +
Sbjct: 301 ERLNRLIEDFLLFARPCEPMLRQVDLNLMMKDIVARFEVQLISSPVEIKSCIKDEPWYSM 360

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  + + N+   A  +  RGG V + V    ++    +   G+     E   +I D
Sbjct: 361 ADMDLLIRGVSNIVKNACEANQRGGVVGVHVVCDADQWAVEICDQGDGV-ESENLERIFD 419

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +   +   +  ++   +  +   +   V +  L +
Sbjct: 420 PFFTTRASGTGLGLAFARQVIGDHAGTIGVKNAKEGGAVFTITLPR 465


>gi|197118369|ref|YP_002138796.1| GAF domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197087729|gb|ACH39000.1| sensor histidine kinase, GAF domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 552

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----------EVM 50
           K     + S  +VAL  + + + H++ SP+  I  + ++L     ++          +++
Sbjct: 312 KMEAQLVQSAKMVALGVMAAGVAHELNSPMTVIIGTAQMLAREMQQEGDSEGAEALSDII 371

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R       ++D    +  +  +I+  I   +          I 
Sbjct: 372 NCGLRCKRIIQNLLTFSRQDQVPVMAIDLNAEVERVLDMIQYQINRSQIAIFEHFDRDIP 431

Query: 111 LSR----ERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLA 158
           +      +  ++L N  + A  +L         ++          +   + S+  NG   
Sbjct: 432 MMNANGPQIQQVLTNFLINARDALMEVEGKEKVIEVSTVLRVEGERRFAVLSVADNGIGI 491

Query: 159 RFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E  ++I      S        +     + +A  +  R+  +           +L 
Sbjct: 492 -AKENLSKIFTPFYTSKEASKGTGLGLSVSLGIAESHNGRIEVDTELGQGSCFRLILP 548


>gi|297529109|ref|YP_003670384.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252361|gb|ADI25807.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 582

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 58/220 (26%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK---FMRL 69
             + + H++ +P+ +I    E L      +    +  + +I   S      ++    +  
Sbjct: 361 FVANVSHELKTPVTSIKGFAETLLDGAMKDEAALEHFLTIILKESERLQTLVEELLDLSK 420

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLN 121
              +   +                +   K  +                       +ILLN
Sbjct: 421 IEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLVIRGDRNRMKQILLN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A    P  G+V +  ++ + E +  +K  G      E   +I +            
Sbjct: 481 LLANAITYTPEHGRVAVEAEEREKEVLIHVKDTGIGIEEKEIP-RIFERFYRVDKARSRD 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  L   +   +          V +    K
Sbjct: 540 SGGTGLGLAIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579


>gi|258592295|emb|CBE68604.1| putative Sensor protein [NC10 bacterium 'Dutch sediment']
          Length = 480

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 67/227 (29%), Gaps = 16/227 (7%)

Query: 4   NICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           ++   L  S  L A+  L + + H+I +P+  I    E L           + +Q+I   
Sbjct: 250 DLERQLQHSEKLAAVGRLAAGLAHEIGTPLNIISGRAEYLLPELSGGDRRSKSLQIIVGQ 309

Query: 57  SMSAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                                   +    I    +  +  +      RV++  + +   +
Sbjct: 310 IGRIRRTVEQLLGYARVHPPHIAPTSLPNILSNVVALLDHELTMGGIRVELKLSADLPSV 369

Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           + +     ++ +NL + A  ++P GG V ++ +  +      ++  G             
Sbjct: 370 AADPDLLQQVFVNLLLNALDAMPDGGDVRVAAEAHEALIEVRVEDTGCGIPPESLPRVFD 429

Query: 169 DGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +     +    V  +  ++   +  +           +  
Sbjct: 430 PFFTTKKVGKGTGLGLSVVYGIVKDHGGTIEVKSEPGVGTTFLIIFP 476


>gi|259502100|ref|ZP_05745002.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041]
 gi|259169913|gb|EEW54408.1| sensory box histidine kinase VicK [Lactobacillus antri DSM 16041]
          Length = 617

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 63/227 (27%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+ ++H+ +E L      +  I  + + +I+  +   I  +  +    
Sbjct: 379 QFVSNVSHELRTPLTSVHSYVEALSDGAWKDQDIAPQFLTVIQNETNRMIRMINDLLSLS 438

Query: 68  ---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                                       + +   E   +      +R            +
Sbjct: 439 RMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKNENNKDSKKYTIERYFTDKDLWVEIDT 498

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  +++ N+   A    P GG +T  + ++ N  I S+   G      +          
Sbjct: 499 DKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFR 558

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       + +    ++  + ++         L 
Sbjct: 559 VDKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGQGSTFYISLP 605


>gi|126651383|ref|ZP_01723590.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
 gi|126591912|gb|EAZ85995.1| two-component sensor histidine kinase (phosphate regulation)
           [Bacillus sp. B14905]
          Length = 510

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 72/219 (32%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L      +  +    +++I   S    + ++ +     
Sbjct: 291 FVANVSHELRTPITSIKGFSETLLDGAYKDEKMLISFLEIIYKESNRLQMLIQDLLELSK 350

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                  +     G  D LI   ++     D   +  +V +    + +  +    +I+ N
Sbjct: 351 IEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIDRDVQVMGDANRIIQIVTN 410

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTI 176
           L   A    P    V+I +++++   I  ++  G      E    F +            
Sbjct: 411 LITNAITYSPENTTVSIRLKENETHGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNS 470

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  L   +  R+  E       ++  ++ K
Sbjct: 471 GGTGLGLAIVKHLVEAHHGRIQVESEVGVGTIMIVMIPK 509


>gi|229032322|ref|ZP_04188295.1| hypothetical protein bcere0028_43640 [Bacillus cereus AH1271]
 gi|228729102|gb|EEL80105.1| hypothetical protein bcere0028_43640 [Bacillus cereus AH1271]
          Length = 484

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +            +    +  + ++ +S  G  +      
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNMFMQELLEEMQMDLSEEGIGVHLQLHS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG       
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNTVIMKVMDNGAGIEADT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   L+K
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478


>gi|229151308|ref|ZP_04279513.1| hypothetical protein bcere0011_28550 [Bacillus cereus m1550]
 gi|228632153|gb|EEK88777.1| hypothetical protein bcere0011_28550 [Bacillus cereus m1550]
          Length = 801

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIKPNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|218233257|ref|YP_002367829.1| sporulation kinase [Bacillus cereus B4264]
 gi|218161214|gb|ACK61206.1| sporulation kinase [Bacillus cereus B4264]
          Length = 801

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIKPNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|270308774|ref|YP_003330832.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154666|gb|ACZ62504.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 1379

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
             + +      +  L A+  + + I H+I +P+  +    ELL         +Q       
Sbjct: 998  QQKLRERADMANRLAAVGEMAAGIAHEINNPLTGVVGFAELLSNRPDLPVDVQDSLKVIN 1057

Query: 58   -------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKI 109
                         L F R        V     + +   +           +   +  +  
Sbjct: 1058 NGSLRVVEIVKRLLTFARQTKPIVSKVSITDIIDNSLTLRSYVLETAGITIIRDYAPDLP 1117

Query: 110  DLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEK 163
             ++ + A+I      +   +     K        I  + +      S K +G      + 
Sbjct: 1118 WINVDPAQIQQVFLNLILNAEQSMKKAHEKGTLSIKTEKTGEYIRISFKDDGTGI-AADV 1176

Query: 164  FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I      +        +       +  E+  R+  E   +        L 
Sbjct: 1177 MDKIFQPFFTTKDPGQGTGLGLSLSQGIILEHNGRIWAENNPEGGATFVIELP 1229


>gi|116873864|ref|YP_850645.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334]
 gi|116742742|emb|CAK21866.1| histidine kinase [Listeria welshimeri serovar 6b str. SLCC5334]
          Length = 591

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 70/228 (30%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE      + +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEILLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSR 113
           +                 VD    +    + I +      I V    +            
Sbjct: 423 ILALSRIEQNPVTENIELVDVDEVIEQSARTIFEMATGKNIHVSVPEKNITPVIIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPLDGKVEVKLIEHEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|22536884|ref|NP_687735.1| sensory box histidine kinase [Streptococcus agalactiae 2603V/R]
 gi|22533734|gb|AAM99607.1|AE014224_10 sensory box histidine kinase [Streptococcus agalactiae 2603V/R]
          Length = 449

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + +EV        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115
           +    T     +         I +     +  +                +      + + 
Sbjct: 270 IDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T++++ +K + I S+   G      +    F +    + 
Sbjct: 330 TQVIDNILNNAVKYSPDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 390 ARSRKQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|229127997|ref|ZP_04256980.1| hypothetical protein bcere0015_24430 [Bacillus cereus BDRD-Cer4]
 gi|228655464|gb|EEL11319.1| hypothetical protein bcere0015_24430 [Bacillus cereus BDRD-Cer4]
          Length = 363

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPSGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|222098143|ref|YP_002532200.1| two component system histidine kinase [Bacillus cereus Q1]
 gi|221242201|gb|ACM14911.1| Two component system histidine kinase [Bacillus cereus Q1]
          Length = 484

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESELGEGTSIFFSLEK 478


>gi|217962157|ref|YP_002340727.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|229141405|ref|ZP_04269943.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26]
 gi|217065095|gb|ACJ79345.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|228642186|gb|EEK98479.1| hypothetical protein bcere0013_44980 [Bacillus cereus BDRD-ST26]
          Length = 484

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESELGEGTSIFFSLEK 478


>gi|160940195|ref|ZP_02087540.1| hypothetical protein CLOBOL_05084 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436775|gb|EDP14542.1| hypothetical protein CLOBOL_05084 [Clostridium bolteae ATCC
           BAA-613]
          Length = 341

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCS----RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M  N    +  ++ + +L S     + H+  +P+ +I     LL+ V + DE+       
Sbjct: 105 MNANFNKMVKELNSMEMLQSDFIQNVSHEFKTPLTSIEGYATLLNGVSLPDELHVYSGHI 164

Query: 57  SMSAIIRLKFMRLAFGYTGSVDS------------LIGLGDIEQVIEDFIAVDKRVQVSW 104
             SA             +   +                   +  +   +   +  + +  
Sbjct: 165 LESARQLSVLTGNILKISKLENQGIVSQKESFFLDEQIRQALLSLAPMWEPKNLDIDMDL 224

Query: 105 TGEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
                  +     ++  NLF  A    P GG +++    +       +K  G        
Sbjct: 225 PETLYYGNENLMFQVWTNLFSNAVKFTPPGGSISVRCCQTPEVIQVCIKDTGVGMTPEVQ 284

Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G     I+ + +    V  +       +  E   D   V +  L 
Sbjct: 285 SHIFDKFYQGEQNRNIEGNGLGLALVKKIVTLCNGTVAVESRPDEGSVFTVRLP 338


>gi|49478723|ref|YP_038716.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|206978115|ref|ZP_03238998.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|229198830|ref|ZP_04325524.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293]
 gi|49330279|gb|AAT60925.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|206743651|gb|EDZ55075.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|228584666|gb|EEK42790.1| hypothetical protein bcere0001_43510 [Bacillus cereus m1293]
          Length = 484

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGEIWAESELGEGTSIFFSLEK 478


>gi|51892178|ref|YP_074869.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855867|dbj|BAD40025.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 521

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLS 56
            + +      ++  +       + I H++ +P+ +I    ELL ++  +  E  + +   
Sbjct: 282 TRELEEANRELERASRYKSEFLTMISHELRTPLTSIIAFTELLLNDPRLAPEQRESLSEV 341

Query: 57  SMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             S+   L  +     Y+              D    + D  + I+   A  + +     
Sbjct: 342 LESSQKLLGMITNLLDYSRLEAGKVKLFREVLDLRDLIRDGVRTIQPLAAKKRIMLSMDC 401

Query: 106 GEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +           +++LLNL   A    P GG+V +  +  + E   +++  G      
Sbjct: 402 APEVPLVHADPLRISQVLLNLLSNAVKFTPEGGRVAVECRADQREVRVTVRDTGPGVPEE 461

Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    F     G  +   +   +       L   +  R+  E    H    +  L 
Sbjct: 462 EQELIFQPFRQGREKGRPEGWGLGLALSASLVRAHDGRIWVESEPGHGAAFTFTLP 517


>gi|258645967|ref|ZP_05733436.1| putative sensor histidine kinase [Dialister invisus DSM 15470]
 gi|260403338|gb|EEW96885.1| putative sensor histidine kinase [Dialister invisus DSM 15470]
          Length = 664

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 61/224 (27%), Gaps = 20/224 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRL 64
           +  +     + + H++ +P+ +I    E++       E  ++    +++  S     +  
Sbjct: 342 AERMRREFSANVSHELKTPLTSISGFAEIISSGMYQSEEDLKVFGRRILDESHRMMSLID 401

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDLSRERAKI 118
             M L+              ++  ++          A  K + V    + + +    A +
Sbjct: 402 TIMHLSKVEETETTIKWKPVEVAGLVRYAAELIKPQADKKNIVVELDMKPVHVYGNAALL 461

Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNV 172
                     A      GG VT+ +     E + ++   G           F +      
Sbjct: 462 SELAMNLLDNAVKYNHEGGHVTVKLAAENGEMVMTVSDTGIGIPVDKQNRIFERFYRAEE 521

Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  L     +         L 
Sbjct: 522 SRNKFTGGSGLGLAICKHIVEKHKGSLTISSTEGEGATFIVTLP 565


>gi|238916037|ref|YP_002929554.1| hypothetical protein EUBELI_00070 [Eubacterium eligens ATCC 27750]
 gi|238871397|gb|ACR71107.1| Hypothetical protein EUBELI_00070 [Eubacterium eligens ATCC 27750]
          Length = 502

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 66/240 (27%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++    + S      L   I HD+ +P+ AI   +E L +        + + +Q I  
Sbjct: 253 LKQSAEDKIKSDAEEKELIRNISHDLKTPLTAIKGYVEGLRDGIANTPEKQAKYIQTIAN 312

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------------KRVQV 102
                   +  + +      +      +             +                 +
Sbjct: 313 KVNDMDKLIDELTIYSRLDTNRVPYTFVRCNVSDYFGDCCEEIGTELEASQIELEYNDHL 372

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARF 160
           +          +  +++ N+   +   +  G +  I +   D  +        NG     
Sbjct: 373 TEPAYMNVDPEQLKRVVNNIISNSVKYMAEGRQGKIKIDLYDEGDYIHAIFSDNGIGIAA 432

Query: 161 PE---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    F +    +           I    V  +  ++K ++  E ++     +   L K
Sbjct: 433 KDVERIFERFYRTDESRNSKHGGSGIGLAIVKKIVEDHKGKIWAESVEGEGTTMHLNLLK 492


>gi|197120858|ref|YP_002132809.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196170707|gb|ACG71680.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 307

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 61/225 (27%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             L     +++ H++ +P+ +I   +E L      +   + E ++++   +      +  
Sbjct: 76  AKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQDPQRQREALEIVAEETARLSGLINR 135

Query: 67  MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +                                   +    +++         +  +R+ 
Sbjct: 136 LLDWARMESGRRVYELSRQPLGPVLDAALAAFEPQLLHHPVQLERDLPPRLPSVMADRSA 195

Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE- 173
           ++   LNL   A        ++ +S   S      ++  NG      ++           
Sbjct: 196 LVEAVLNLLNNAFKYTGPDKRIRLSAVASGPTVTIAVTDNGPGIPQRDQKHVFDKFYRAS 255

Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                T++   +    V  +   +  ++  E            L 
Sbjct: 256 DPLRRTVEGTGLGLAMVKHIVVGHGGKVSVESEPGCGATFRIALP 300


>gi|288553692|ref|YP_003425627.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288544852|gb|ADC48735.1| two-component sensor histidine kinase involved in phosphate
           regulation [Bacillus pseudofirmus OF4]
          Length = 593

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 68/219 (31%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIR--------- 63
             + + H++ +P+ +I    E L +  +      ++ + +I   S               
Sbjct: 366 FVANVSHELKTPVTSIKGFSETLLDGAMADPAYMEKFLTIIHKESERLQSLIQDLLELSK 425

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
               + RL +G       +    ++ +   +   +   +  + + E    S    ++ +N
Sbjct: 426 LEQHYFRLNWGRAELTKIVQDAVELLRPKAEAKEIALSLHAASSVEMDGDSERLKQVAIN 485

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176
           L   A    P  G++ +SV       +F++  NG      E    F +            
Sbjct: 486 LISNAITYTPNHGEINVSVTQDHQSILFTVSDNGIGIESSELPRIFERFYRVDRARSRNS 545

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  L   +  +L  E    H    +    K
Sbjct: 546 GGTGLGLAIVKHLVEAHNGKLSVESELGHGTTFTIHFMK 584


>gi|229120300|ref|ZP_04249550.1| hypothetical protein bcere0016_6150 [Bacillus cereus 95/8201]
 gi|228663110|gb|EEL18700.1| hypothetical protein bcere0016_6150 [Bacillus cereus 95/8201]
          Length = 463

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLAIVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 454


>gi|153955165|ref|YP_001395930.1| two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219855600|ref|YP_002472722.1| hypothetical protein CKR_2257 [Clostridium kluyveri NBRC 12016]
 gi|146348023|gb|EDK34559.1| Two component sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569324|dbj|BAH07308.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 351

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-S 59
           MAK +        +     S + H+I SP+ +I     LL +  + +  +          
Sbjct: 121 MAKELGSL---EKMRQGFISDVSHEIQSPLTSISGFAALLRKGNLSESQISRYANIIEAE 177

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVSWTGEKI 109
           +    K        +        L               ++ +     K + +  + +K 
Sbjct: 178 SKRLSKLSENLLRLSNLESENHNLNLKNYQIDKQIESILLMLEPQWSAKSITLDVSLDKT 237

Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +  +     ++ +NL   A       G + + +  ++NE    +   G      +    
Sbjct: 238 IVCGDEDLLSQVFINLLHNAIKFTSENGNIGVKLSSNENEIECKISDTGRGISPQDQPRI 297

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +         + +    V  +   +  ++            +  L +
Sbjct: 298 FERFYKADKSRDRSLGGNGLGLSIVKKIVDLHGGKISLTSEIGKGTEFTIFLPR 351


>gi|189467535|ref|ZP_03016320.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
 gi|189435799|gb|EDV04784.1| hypothetical protein BACINT_03925 [Bacteroides intestinalis DSM
           17393]
          Length = 652

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 59/228 (25%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        M   ++  + + H+I +P+ AI    E++     E E  + + +   ++ 
Sbjct: 287 AKQRAEEADRMK--SVFLANMSHEIRTPLNAIVGFSEIIALTEDEVEKAEYLNIIQKNSN 344

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                 + F        +  +  + ++          +       
Sbjct: 345 LLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLKMKTGIRLNVICPDEEIW 404

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       ++L N    A  +    G +T+ ++         +   G      +     
Sbjct: 405 IMVDRNRITQVLFNFLSNAIKNT-HEGTITLGLEVCGEWLKVYVTDTGCGIAKEKLPLIF 463

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +       +      ++  E            L 
Sbjct: 464 NRFEKLNDFVQGTGLGLPICQSIVERLGGKISVESEVGVGSTFVMTLP 511


>gi|302341576|ref|YP_003806105.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301638189|gb|ADK83511.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 745

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLI 53
            +       +  + AL  L   I HD  + + AI    E+        +    D+ ++LI
Sbjct: 359 RRLQEQLAQARKMEALGTLAGGIAHDFNNILAAIMGYAEICQAAVADGQGQENDQRLELI 418

Query: 54  RLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             ++  A   ++    F R              + ++  +    +     ++      + 
Sbjct: 419 IKAAERARDLIRQILTFSRPKGKDMRPTRLGPLIEEVLGLFRGGLPASIALKADLAAGQA 478

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ---------------DSKNENIFSLKIN 154
            +  +  +I   L  +   ++    +    ++                       S+  +
Sbjct: 479 VVVCDPTQIQQLLMNLCANAMHAMEQRGGEIRVGLEVVDLSAGQDGLTPGRYARLSVSDD 538

Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G+         ++ D    +  +     +       +   +  R+  E           L
Sbjct: 539 GDGI-PKAIADRVFDPFFTTKAEGKGTGMGLAVAHGIVAAHNGRIGFESAPGAGATFRVL 597

Query: 213 LE 214
           L 
Sbjct: 598 LP 599


>gi|294496045|ref|YP_003542538.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292667044|gb|ADE36893.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 729

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 70/237 (29%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
                 L S+  +     S + H++ +P+ +I    ELL++         +    + +  
Sbjct: 489 SKANEELKSLDKMKDEFLSNVSHELKTPLTSIIGYTELLNDGSLGELGEEQKHAEETVMR 548

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           ++      +  +           +  F      +    + +  Q+  +   ++   ++  
Sbjct: 549 NTKRLQRLVDSLLYLSRTQAGTVQYDFETLNISELTDQIIEDLQIQTEEKNLEMIKKIEP 608

Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +I   R++   +  N+   +    P+GG +TI           ++K  G        
Sbjct: 609 DLPQIKGDRDKLTDMFTNIIDNSIKFTPKGGSITIFANKEDEYIHINIKDTGIGIPKDMI 668

Query: 164 ---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              F +    +           +  Y    +   ++  +  E         +   L 
Sbjct: 669 DNLFQRFYQIDSSQKRKYGGTGLGLYITKTIVEAHEGEIWVESEGKGKGTEVHIKLP 725


>gi|237654376|ref|YP_002890690.1| histidine kinase [Thauera sp. MZ1T]
 gi|237625623|gb|ACR02313.1| histidine kinase [Thauera sp. MZ1T]
          Length = 693

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56
           +       + S  L A+  L + + H+I +P   I  +L+LL E        V   IRL 
Sbjct: 433 LRAAQHRLVMSEKLAAIGELTAGVAHEISNPTAVIQGNLDLLREELGPAAQPVANEIRLI 492

Query: 57  SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVS---W 104
                     +     +            VD    L D   +    +A  +   V     
Sbjct: 493 HEQVGRIRLIVTKLLQFARPGEFAGYVEDVDVNAALADCLVLTRQHLARAEVKVVQRLAA 552

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           T       +E  ++L+NL + A  ++P         V    +        +++  G   R
Sbjct: 553 TARVQINLQELQQVLINLIVNAVQAMPAGGTLTLETVDRDPRQDARGVRITVRDTGGGIR 612

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +                  +       L      R+  +         +  L
Sbjct: 613 AEDLARIFDPFFTTKKRQGTGLGLSISHTLVERYGGRIEVDSAPGRGAAFTVSL 666


>gi|220917727|ref|YP_002493031.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955581|gb|ACL65965.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 375

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 73/242 (30%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            +++      +  L A+  + + + H+I +P+ A    L +L+      E   +  +++ 
Sbjct: 133 KRDLASRAQMAEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRIQKLEAERQGPLLEP 192

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQV 102
           + L           +     +    + +    ++  VI   +           V    ++
Sbjct: 193 LTLVKDEIRRLDHILEDFLQFARPREFVRKAIEVAPVITKVVDLLGGEAERRGVRLEREL 252

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------LPRGGKVTISVQDSKNENIFSLKI 153
                         ++L+NL + A  +           R     +   ++       +  
Sbjct: 253 EPVPPVAGDEERLRQVLVNLCLNALEAVDARGLVRVSCRPAPADVDHPEAPAMVDLLIDD 312

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G     P++  +I +    +      +    V  +  ++   +  E   +        L
Sbjct: 313 DGPGV-VPDQRDRIFEPFFTTKARGSGLGLSIVHAIVTQHGGTIRIEDSPEGGARFVLRL 371

Query: 214 EK 215
            +
Sbjct: 372 PR 373


>gi|42781110|ref|NP_978357.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42737031|gb|AAS40965.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 351

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 173

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +       + +          +    +   L        +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERATYRLDQQLKQIVLNSEPLWAEKEIELELNLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPNGGTITIQLKEYEKVVEVRIRDSGIGISKEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  +         + K
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVCIPK 347


>gi|197122935|ref|YP_002134886.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter sp. K]
 gi|196172784|gb|ACG73757.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter sp. K]
          Length = 375

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 73/242 (30%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            +++      +  L A+  + + + H+I +P+ A    L +L+      E   +  +++ 
Sbjct: 133 KRDLASRAQMAEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRIQKLEAERQGPLLEP 192

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQV 102
           + L           +     +    + +    ++  VI   +           V    ++
Sbjct: 193 LTLVKDEIRRLDHILEDFLQFARPREFVRKAIEVAPVITKVVDLLGGEAERRGVRLEREL 252

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------LPRGGKVTISVQDSKNENIFSLKI 153
                         ++L+NL + A  +           R     +   ++       +  
Sbjct: 253 EPVPPVAGDEERLRQVLVNLCLNALEAVDARGLVRVSCRPAPADVDHPEAPAMVDLLIDD 312

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G     P++  +I +    +      +    V  +  ++   +  E   +        L
Sbjct: 313 DGPGV-APDQRDRIFEPFFTTKARGSGLGLSIVHAIVTQHGGTIRIEDSPEGGARFVLRL 371

Query: 214 EK 215
            +
Sbjct: 372 PR 373


>gi|242277765|ref|YP_002989894.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242120659|gb|ACS78355.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 393

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 68/240 (28%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE-------LLDEVGIEDEVM 50
           M K        +  +  +  L + + H+I +P+ A+    E        LD+   ++   
Sbjct: 153 MEKEYQAKFYQAEKMATIGVLAAGVAHEINNPMAAVAGFAEGIQRRLTRLDDKIPDELAE 212

Query: 51  QLIRL----------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            L                     L F R        VD      D  ++++      +++
Sbjct: 213 DLYDYTNTILKECLRCQDIVKTLLSFSRPVASEFIPVDINQVAEDTLRLLDHQFRRYQQM 272

Query: 101 QVSWTGEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           ++         S      +  ++LLNL   A  ++   GK+ I            +  +G
Sbjct: 273 ELEVKLASPMQSILGNEAQLKQVLLNLLTNAVDAIEHNGKINIETFVENKHVGVRVSDSG 332

Query: 156 NLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +            +     I       +  E+   ++ +  +      + L  
Sbjct: 333 CGIPEASRGMLFEPFFTTKQVGKGIGIGLSTCYNIVREHNGEIIVDSEEGKGSSFTVLFP 392


>gi|149927362|ref|ZP_01915617.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105]
 gi|149823854|gb|EDM83079.1| Hpt sensor hybrid histidine kinase [Limnobacter sp. MED105]
          Length = 418

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 64/238 (26%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +AK    +       +   + I H++ +P+ AI    +LL+    +  +  +V  +   +
Sbjct: 26  LAKEQAESADRAK--SEFLATISHELRTPLNAIIGFSKLLEEQLDDPELRGDVRNISSSA 83

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SW 104
           +   +I    +  +      +       D++ ++    ++++ + +              
Sbjct: 84  TSLHLILSDVLEYSRIQANGLKLDPSPFDLDAMVRQVYSLNRNLALKKNLEFSLVNETEG 143

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
                  +    +++ NL   A      G      +     +        +  +G     
Sbjct: 144 PCFVHGDANRLRQVVQNLVSNALKFTDIGYVKMRLMTSQPAQGRIEVFIEVVDSGIGISQ 203

Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           P               +        +       L      R+          V +  L
Sbjct: 204 PALQKLFQRFSQASREINRQYGGTGLGLAICKGLVELMGGRIDVSSELGVGSVFTVSL 261


>gi|76666631|emb|CAJ31152.1| histidine protein kinase [uncultured sulfate-reducing bacterium]
          Length = 490

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 71/225 (31%), Gaps = 18/225 (8%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53
            +     +  + A+  L + + H++ +P+  +  SLE +     + E+ +          
Sbjct: 255 QLSQLAHTEKMAAVGTLAAGVAHEVRNPLAGVLASLENMRANPDDREMAERYVDLIEDGL 314

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEK 108
           +    +    L F R              L  + ++    I          +    T + 
Sbjct: 315 QRIEHTVRTLLDFSREQEISLEPTSINHSLRHVAELAAYKIRKAGVEVVFDLAEPGTAQV 374

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +    +  ++ LNL + A  ++P GG +T+  +    +   +++  G      +   +I 
Sbjct: 375 MADHFQMEQLFLNLVLNAVEAMPEGGVLTLRTRVKWGKVEVAVEDTGVGI-AEDVRDRIF 433

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           D    +        +       +   ++  +  E       V   
Sbjct: 434 DPFFTTREVGAGTGLGLAVSHSIVGAHRGTIKVESTPGRGSVFHV 478


>gi|328952067|ref|YP_004369401.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452391|gb|AEB08220.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 486

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
            K +   L  +  L AL  + + + H+I +P+G I ++ ELL +         +L ++  
Sbjct: 254 RKELQAQLELAERLAALGEMVAGVAHEIRNPLGIISSTAELLRKRLEANPSDGRLAQIIE 313

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                  + +     +    +  +   DIE+++E  +   +              +   +
Sbjct: 314 EEVNRLNQTVTEFLDFARPREPNLQPTDIERILERGLEFLQPEIDRSQISLERHYQLNGQ 373

Query: 118 I-----------LLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +            LN+F+ A  ++P+     V              ++ +G      E  
Sbjct: 374 VLKADSELLYRAFLNIFINAIQAMPQGGRLIVATEPGPQNKGARIIIQDSGEGI-SSENV 432

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +      +    V  +   ++ ++  E   +    +   L 
Sbjct: 433 KKIFNPFFTTKDKGSGLGLSIVKGIVESHQGQIHIESNLNCGAKVIITLP 482


>gi|225862628|ref|YP_002748006.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225786705|gb|ACO26922.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 456

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHIRISVIEENKHITITIEDEGEGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|169125729|gb|ACA48227.1| LipQ [Pseudomonas alcaligenes]
          Length = 984

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +P+  I    + L E          I ++++   +
Sbjct: 745 EDQLVHSERLASIGRLAAGVAHEIGNPVTGIACLAQNLREEREGDEELGEISNQILDQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V             
Sbjct: 805 RISRIVQSLMNFAHAGQQQRAEYPVSLAEVAQDAIGLLSLNRHGTEVQFYNLCDPEHLAK 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P GG + +  +  +   +  ++  G          ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGGAIRVRSEAEEQSVVLIVEDEGTGI-PQAIMDRLFE 923

Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +        +    V  +  E+  ++  +   D            L +
Sbjct: 924 PFFTTKDPGKGTGLGLALVYSIVEEHYGQITIDSPADPEHQRGTRFRVTLPR 975


>gi|168217044|ref|ZP_02642669.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182380977|gb|EDT78456.1| sensory box histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 571

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 65/222 (29%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
            ++ +   + I H++ +P+ +I    E L    +    ++ + +I   S      L+ + 
Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407

Query: 69  LAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118
             +       +++   +           + +        + +        +    +  ++
Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           LLNL   +     +GGKV +   +     I  ++ NG      +   +I +         
Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +           +   + 
Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568


>gi|156741627|ref|YP_001431756.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus castenholzii DSM 13941]
 gi|156232955|gb|ABU57738.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus castenholzii DSM 13941]
          Length = 391

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
                 L  +D L     + + H++ +P+ AI   LEL +         ++ + + +I  
Sbjct: 157 SARNAELQELDRLKNTFLATLSHELRTPLTAILGYLELFERRTLGSLNDVQGQAINVIAR 216

Query: 56  SSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           ++ +    L  +                   + L  + +  Q +     V     +  T 
Sbjct: 217 NARTLSRILNNLLYLQEVRSTEIRRAPVVIHEVLQEVIEDMQPLARAANVTLSASLQPTA 276

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +      ++ L  L   A    P  G+V +++ D  +  +  ++  G      E   +
Sbjct: 277 VYMGDPIGISQALRALIDNAIKFTPPSGRVDVTLIDEPSRVLVRVEDTGIGI-PAEAQEK 335

Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I     +             +       +   +   L    +       + +L +
Sbjct: 336 IFLPFYQIDDTLARPYSGAGLGLAIARHVVEAHGGHLTVRSVVQAGSTFTVVLPR 390


>gi|323139256|ref|ZP_08074310.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
 gi|322395477|gb|EFX98024.1| integral membrane sensor hybrid histidine kinase [Methylocystis sp.
           ATCC 49242]
          Length = 923

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 70/250 (28%), Gaps = 38/250 (15%)

Query: 2   AKNICFNLSSMDL-----VALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDE 48
           A+     +++ +L      A   S         + H++ +P+ AI    E+L E  ++  
Sbjct: 404 ARTRELQMANEELSVARVAAEEASKTKSAFLANMSHELRTPLNAIIGYSEMLQEDALDKG 463

Query: 49  VMQLIRLSSMSAIIRLKFMR--------------LAFGYTGSVDSLIGLGDIEQVIEDFI 94
             + +             +                   +   VD    + ++  +++   
Sbjct: 464 DAEPLEDLKKIEGAGRHLLGLINDILDLSKIEAGKMEVFIEKVDIRPLVNEVMSIVQPLA 523

Query: 95  AVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
             +      V     G       +  + LLNL   A+    +G    I  +D++   +F 
Sbjct: 524 EKNGNALELVCPDDAGSFHSDETKVKQCLLNLMSNANKFTSKGKVTLIVERDAQASVVFR 583

Query: 151 LKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           +   G      E+  ++                   +         +    ++  +   D
Sbjct: 584 VSDTGLGM-TEEQLGRLFLAFTQADASTTKRFGGTGLGLAITKHFCNALGGQISVQSAPD 642

Query: 205 HNVVLSALLE 214
                +  L 
Sbjct: 643 AGSTFTITLP 652


>gi|320352832|ref|YP_004194171.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320121334|gb|ADW16880.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 602

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 77/235 (32%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLS 56
           + +N    +  ++ + +L   I HD  + +  I  ++     LL+      + +     +
Sbjct: 216 LLQNELIKMQKLESIGVLAGGIAHDFNNILTGIMGNISYAQVLLEPGHPACQPLASAEQA 275

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
           ++ A    + +         +  ++ + ++ +     +     V+     +    +    
Sbjct: 276 TIRAADLTRQLLTFARGGEPIKQVVSVAELIKEAMALMLRGSTVKGETRFDVGLWAIEAD 335

Query: 114 --ERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLAR 159
             + +++  N+ + A  ++P+GG +TI+  +            +      ++   G    
Sbjct: 336 AGQISQVFNNMIINAVQAMPQGGTLTIAADNELIAEDSPLSLPTGRYVRVTIADEGCGM- 394

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P+   +I D    +      +       +   +   L  + +       +  L 
Sbjct: 395 EPDVMGRIFDPYFSTKGTGSGLGLASAYSIVTRHAGALEVDSVVGQGTTFTLHLP 449


>gi|317057520|ref|YP_004105987.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315449789|gb|ADU23353.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 456

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 74/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + +N       +     L     S + H+  +P+ +I    +LL    +  E        
Sbjct: 215 LQRNFNKMAQELSGIETLRGDFISNVSHEFKTPLASIQGFAKLLQNPTLSMEERDEYTQI 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
            +    RL  +         +++   +G  ++   D       + +     K D+  +  
Sbjct: 275 IIDETSRLSKLSSNILNLTKLENQTTIGKKKRFHIDEQIRKIILMLEPEWSKKDIDMDID 334

Query: 115 ------------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                         +I  N+   A    P+ G++ +++   +   +  +  NG       
Sbjct: 335 LEDIIYVGNEDLMGQIWQNIINNAIKFTPQEGQIKVTLFRGEMGVVTKIWDNGPQIPADK 394

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + F +   G+  S  + + +    V  +      ++  +   +  VV +  L 
Sbjct: 395 KDKIFEKFYQGDRSSATEGNGLGLALVKRIVDLADGKISVDNPFEGGVVFTVELP 449


>gi|212288555|sp|A5A2P0|WALK_STASR RecName: Full=Sensor protein kinase walK
 gi|145423879|gb|ABP68577.1| YycG [Staphylococcus sciuri]
          Length = 419

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 19/221 (8%), Positives = 61/221 (27%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+ ++ + +E L+     +  +    + + R  +   I  +  +     
Sbjct: 186 FVANVSHELRTPLTSMRSYIEALEEGAWRDPEVAPTFLNVTREETDRMIRLVNDLLQLSK 245

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121
                    +  ++  + +  I    E     +         + + +  +     ++  N
Sbjct: 246 MDSSSDQMNSELINFNMFINKIINRHEMSQGKNVTFIRDIPVKGLFVEIDPDKMTQVFDN 305

Query: 122 LFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           +   A        K            N     +K NG      +    F +    +    
Sbjct: 306 VITNAIKYSQESHKRVEFHVKQNTLYNRMTIQIKDNGIGIPVNKVDKIFDRFYRVDKARA 365

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +       +   +K R+     +     +   L 
Sbjct: 366 RKMGGTGLGLAITKEIVEAHKGRIWASSKEGQGTSIYITLP 406


>gi|197118249|ref|YP_002138676.1| PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197087609|gb|ACH38880.1| sensor histidine kinase, PAS domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 649

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 70/245 (28%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + K     L +  + A+  L   I HD  + + A+    +LL             ++ I+
Sbjct: 295 LKKLENQLLHAQKMEAIGTLAGGIAHDFNNIMTAVIGYTDLLMLELVPPAPYRGFLENIQ 354

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107
            +S  AI  +K +           + +    + Q +   +      +V +          
Sbjct: 355 NASHRAIALVKNLLAFSREEALPTAKLECNALLQNVAGLMKRLIGHEVDFVLNLSSAPQG 414

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSLK 152
            +    +  ++L+NL   A  ++P GG +T                    +      S  
Sbjct: 415 ILVDQGQIEQVLVNLATNARDAMPHGGTLTIEVAAIELSALELAGHHTAKAGPYVQISFS 474

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G         ++I D    +        +       +   +   +            S
Sbjct: 475 DTGLGIDES-VKSRIFDPFYTTKEVGKGSGLGLSISYGIVKRHGGLIDVASGQGRGTTFS 533

Query: 211 ALLEK 215
            LL K
Sbjct: 534 VLLPK 538


>gi|91202961|emb|CAJ72600.1| similar to two component sensor histidine kinase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 524

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 73/246 (29%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------------D 41
           +       + S  L ++  L + + H+I +P+ ++    E L                 +
Sbjct: 268 LQHTQRRLVQSEKLASIGTLATGLAHEINNPLASVAGCAEGLNERLISILNRPGKYTEKE 327

Query: 42  EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-------EQVIEDFI 94
           E+ I  E +++I   +      +  +      +      I +  I        Q  +   
Sbjct: 328 ELEIFSEYLKIISNETYRCKSIISNLLNFSRQSEPHFERIDINSIIKNTIDSLQYHQPEN 387

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSL 151
              +++QV+ +    ++  +  +I          +  +   GG++ I+    +       
Sbjct: 388 KAKQKIQVNLSEMPCEIIGDPQQIKQVFINLITNSFHATEAGGEIIIATLQKETTVQILF 447

Query: 152 KINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEII-DDHNVV 208
           +  G     PE   +I D    +        I       +   +  R+      +    V
Sbjct: 448 RDTGVGI-KPEYLNRIFDPFFTTKPTEKGTGIGLSICYGIVDMHNGRIDVFSEGEGRGAV 506

Query: 209 LSALLE 214
                 
Sbjct: 507 FEITFP 512


>gi|119718537|ref|YP_925502.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119539198|gb|ABL83815.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 593

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 67/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           + +         D+      L + + H++ +P+ AI    E+L       +  +    + 
Sbjct: 354 LEREHQLLDELRDIADYKGRLVATVSHELKNPLSAILGYAEILAGEPGLSDAARACVAAI 413

Query: 58  MSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSW 104
                RL  +                  +  VD    + ++ ++           ++   
Sbjct: 414 ERGGGRLARVVDDLLLLHEPADADAMSTSQPVDLGQAVAEVVELNGPVARGRRLTLRADL 473

Query: 105 TGEKI---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
               +      R+   ++ NL   A    P GG + ++V+   +E +     +G      
Sbjct: 474 PAVPVLALADPRDVDHVVTNLVGNALKYTPEGGTIAVTVERDGDEAVLRCTDDGIGIAEE 533

Query: 162 EKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+     +    +           +    V  +   +  R+  +            L 
Sbjct: 534 EQAHLFEEFFRSTDPAAVAQPGTGLGLAIVRRVVERHGGRIEVDSALGRGSTFRVFLP 591


>gi|167622092|ref|YP_001672386.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
 gi|167352114|gb|ABZ74727.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 712

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +     + +  L AL  L + I H+I +P   I  ++ELL  +      +V + I L 
Sbjct: 452 LNETRQQLVINEKLTALGELTAGIAHEINNPTAVILGNMELLKYELGDRAVDVEEEIELV 511

Query: 57  SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRV---QVSW 104
                     +R    Y+                 + ++  ++   I   + V   +++ 
Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIQKQEVVLNQELNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++                         ++  G    
Sbjct: 572 SYPIQVNRPQLLQVLINLVVNAAHAMNGKGRIWIRTYDWVQHGEPIGVKIEVEDEGKGIP 631

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E   +I D    +  D   +       +       +          + +  L
Sbjct: 632 EEELN-RIFDPFFTTRKDGTGLGLSLSYGIIKRIGGTIEVSSTVGKGSLFTIGL 684


>gi|163790640|ref|ZP_02185068.1| Sensory transduction histidine kinase [Carnobacterium sp. AT7]
 gi|159874088|gb|EDP68164.1| Sensory transduction histidine kinase [Carnobacterium sp. AT7]
          Length = 464

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMR 68
             D+   L S I H+I +P+  +  SLE + +    I D+ +Q            +  + 
Sbjct: 241 QQDIRNQLSSDIAHEIRTPLTTLKGSLEAMIDGIWEITDDRLQSCYDEVNRITRLIGSID 300

Query: 69  LAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                    D        L  L +      + + V K +  +  G+ + ++ ++    ++
Sbjct: 301 KINEIESHQDSLNKTSFDLYALAENISSNFEALFVKKNIYYALNGDPLFITADKDKISQV 360

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           + NL   A    P  G +T+ +++ +N+ + ++   G      E    F +    ++   
Sbjct: 361 ITNLLSNAVKFTPPEGTITLKIRNEENQALLTIADTGEGIHPKEINRIFERFYMSDLSRN 420

Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I    V  +   +   +  +         + +L 
Sbjct: 421 SFLGGQGIGLSIVKSIIKAHNGTITVKSDYGKGSTFTVILP 461


>gi|37523781|ref|NP_927158.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35214786|dbj|BAC92153.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 686

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
           ++I    +   L A   S + H++ +P+ +I  +L LL              ++ +   +
Sbjct: 298 RDITERQAVERLKAEFVSVVSHELRTPLTSIRGALGLLTGGLLGPLSEKGRRMLDIAIAN 357

Query: 57  SMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTG 106
           +   +  +  +                  D    L     +++          +  S + 
Sbjct: 358 TDRLVRLINDILDVERMESGKVILVRRRCDLAELLTQSADLMQSMAQQGGVMLLCESKSA 417

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     +   NL   A    P G  V +S      +    +   G      +    
Sbjct: 418 PLWADPDRLIQTFTNLISNAIKFSPAGSTVRVSAACDGPQVQVRVVDQGRGIPAEKLESI 477

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +       +  ++  RL  E            L 
Sbjct: 478 FERFQQVDASDSRKKGGTGLGLAICRSIVLQHGGRLWAESAPGKGSTFVLTLP 530


>gi|324327182|gb|ADY22442.1| histidine kinase [Bacillus thuringiensis serovar finitimus YBT-020]
          Length = 458

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 VIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 458


>gi|309791555|ref|ZP_07686054.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226415|gb|EFO80144.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 523

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ A+  +LELL      +  +       +R  +   I  +  + +   
Sbjct: 285 FVADVSHELRTPLAAMQGNLELLARGAANNPEIFEEVIGDMRRETARLIRMVNDLLVLAQ 344

Query: 73  YTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                             L    ++      V  R+                + LLNL +
Sbjct: 345 SESRRQIRTEPVELDTLLLEVYRELRTLAGEVTLRIGEEDQVLVQGDRDRLKQALLNLGV 404

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
            A    P GG VT+ ++  +     S+   G      +                      
Sbjct: 405 NAIQHTPPGGYVTMGLERREGFACLSVADTGEGIADEDLPHIFDRFFRADRSRSRHSGGA 464

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +A  ++  +    I       +  L 
Sbjct: 465 GLGLSIVRWVAEAHRGSVTVASIPGRGSTFAIWLP 499


>gi|229070714|ref|ZP_04203944.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185]
 gi|228712384|gb|EEL64329.1| hypothetical protein bcere0025_28910 [Bacillus cereus F65185]
          Length = 448

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448


>gi|228908985|ref|ZP_04072815.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL
           200]
 gi|228953539|ref|ZP_04115582.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229080447|ref|ZP_04212968.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2]
 gi|228702749|gb|EEL55214.1| hypothetical protein bcere0023_30910 [Bacillus cereus Rock4-2]
 gi|228806123|gb|EEM52699.1| hypothetical protein bthur0006_29160 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228850707|gb|EEM95531.1| hypothetical protein bthur0013_31410 [Bacillus thuringiensis IBL
           200]
          Length = 448

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFNVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARTRNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448


>gi|78356308|ref|YP_387757.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78218713|gb|ABB38062.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 654

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 69/242 (28%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIE-------DEVMQL 52
           M + +      M+ + +    I HD  + +GAI +  EL L++   +         V++ 
Sbjct: 256 MERELRHA-QKMEAIGIFAGGIAHDFNNILGAISSCSELALEDTPEDSPVREDLYHVLKA 314

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            R           F +       +V     + +  Q+++ FI     V++        + 
Sbjct: 315 ARRGKNLVKRIKTFSQRTELTKTTVQVRYTVQECIQLLQTFIPATVEVRLRINAPTAQVK 374

Query: 113 RERAK---ILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKIN 154
            +  +   +L+NL   A  ++                           +    + S++  
Sbjct: 375 ADPDQLLQVLMNLCTNAEQAMRGMKGLLEITLDMETLDTGHAAPLELPAGRYVVISVRDT 434

Query: 155 GNLARFPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G   +       + +    +        +       +   +  R+  +            
Sbjct: 435 GTGMKPV-VMKHVFEPFYTTRKKSGGTGLGLSITQNIVRLHGGRITVDSAPSRGSTFRVY 493

Query: 213 LE 214
           L 
Sbjct: 494 LP 495


>gi|18310739|ref|NP_562673.1| sensory box histidine kinase [Clostridium perfringens str. 13]
 gi|18145420|dbj|BAB81463.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
          Length = 571

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 62/222 (27%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
            ++ +   + I H++ +P+ +I    E L   ++    ++ + +I   S      L+ + 
Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVEDDETRNKFLSIIDEESDRLARLLEDIL 407

Query: 69  LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118
             +                         + +        + +        +    +  ++
Sbjct: 408 CLYEIEQKRSTILEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           LLNL   +     +GGKV +   +     I  ++ NG      +   +I +         
Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +           +   + 
Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568


>gi|118581481|ref|YP_902731.1| signal transduction histidine kinase NtrB [Pelobacter propionicus
           DSM 2379]
 gi|118504191|gb|ABL00674.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Pelobacter propionicus DSM 2379]
          Length = 369

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 61/230 (26%), Gaps = 26/230 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMS 59
            +  L  L  L + + H++ +P+G I  + +LL++              +++        
Sbjct: 138 QADRLSTLGTLAAGLAHEVKNPLGGIKGAAQLLEQELAAESELLEYTRVMIRETERIDRI 197

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKI 118
               L+           V+    LGDI  + +  +          +     D+  +R  +
Sbjct: 198 IRELLELASPRGLKLAPVNLHRILGDILLLQKQAVADRQISFVTHFDPSIPDIMADREML 257

Query: 119 LLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                 +   ++                        Q         +  +G      +  
Sbjct: 258 TRLFLNLIRNAIDAIAESGQLTVTSRVLSDYRLAQNQRRSRMVAVDIADDGPGIPGADL- 316

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I      S      +       +  E++  +  E    H    + LL 
Sbjct: 317 ENIWTPFFSSKSTGTGLGLTICHKIVSEHRGMIKVESDPGHGTKFTVLLP 366


>gi|320352967|ref|YP_004194306.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121469|gb|ADW17015.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
          Length = 541

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRL- 55
            + +   L  S  + A+  L   I HD  + + AI    EL  L          ++ ++ 
Sbjct: 159 QRQLEEQLRQSQKMAAIGTLAGGIAHDFNNLLAAILGYAELALLKLPPGGALQREIRQIL 218

Query: 56  -----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGE 107
                +S      L F R        +   + + ++ +++   I     ++         
Sbjct: 219 KAGGKASELVNQILAFSRKETTKRIPIQPGVLIKEVIKLLRGTIPSTITIRERIAATDRM 278

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT-----------ISVQDSKNENIFSLKINGN 156
            +    +  ++++NL   A  ++   G                 ++ +     S+  NG 
Sbjct: 279 ILANPTQLHQVVMNLCTNAFHAMEEQGGEMTLSLESVRKLLREKEEEREWIRISVADNGC 338

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +        +    V  +   +  R+  +        +     
Sbjct: 339 GIEPATL-ERIFEPYFTTKPSGKGTGMGLAVVHGIVESHGGRIEVKSTVGQGTTVQVYFP 397


>gi|229017938|ref|ZP_04174816.1| hypothetical protein bcere0030_24740 [Bacillus cereus AH1273]
 gi|229024160|ref|ZP_04180626.1| hypothetical protein bcere0029_24840 [Bacillus cereus AH1272]
 gi|228737117|gb|EEL87646.1| hypothetical protein bcere0029_24840 [Bacillus cereus AH1272]
 gi|228743363|gb|EEL93485.1| hypothetical protein bcere0030_24740 [Bacillus cereus AH1273]
          Length = 439

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 80/223 (35%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 208 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSRDEYIEHILEELN 267

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112
           R  ++           +               I+ ++      +  +   ++    I  +
Sbjct: 268 RAQAIIDDYLTFAKPASEKLDCISVEHELHRVIKMILPLCNMNNINITQEFSEGIIIGNT 327

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 328 QHFHQCFLNLIKNSIEAMPSGGNLIISATVSNNKVIIRIEDSGIGM-SQEQINRFGEPYF 386

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L  + + +    L+  L K
Sbjct: 387 STKTKGTGLGTMVAVKIIETMRGTLKIQSVINKGTTLTITLPK 429


>gi|222150272|ref|YP_002559425.1| two-component sensor histidine kinase [Macrococcus caseolyticus
           JCSC5402]
 gi|222119394|dbj|BAH16729.1| two-component sensor histidine kinase [Macrococcus caseolyticus
           JCSC5402]
          Length = 612

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 61/220 (27%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++ + +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 382 FVANVSHELRTPLTSMRSYIEALEEGAWKDENLAPQFLSVTREETDRMIRLVNDLLQLSK 441

Query: 73  YTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121
                       +D  + +  I    E     +           I +  +     ++  N
Sbjct: 442 MDNTDDNLNKELIDFNMFIHKIINRFEMSEGKNATFIRDIPKNGIFVEIDPDKMTQVFDN 501

Query: 122 LFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174
           +   A        KV   V+ +   N     +K NG      +                 
Sbjct: 502 VITNALKYSKGRKKVEFHVKQNTLFNRMTIQIKDNGIGIPLNKVDKIFDRFFRVDKARTR 561

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +   +  R+     + +   +   L 
Sbjct: 562 KMGGTGLGLAISKEIIEAHNGRIWANSKEGYGTSVYITLP 601


>gi|254414468|ref|ZP_05028234.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196178698|gb|EDX73696.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 421

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 62/234 (26%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +++       +L + + S + H+  +P+  I +S ELL   G + +  +  R      
Sbjct: 172 LRQSLTKEKELSELKSNIISVVSHEYRTPLATILSSSELLQHYGHKWQEDKKQRHFQRIQ 231

Query: 61  IIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                  +               L +  Q+           +  
Sbjct: 232 NTIHHMTQLISDVLLINKAEAGKLEFKPVPLDLEAFCQELVEELQLTVKTPHQIGFRRQG 291

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +       +   + L NL   A    P GG V   +    ++  F++K  G      E+
Sbjct: 292 RSRWVGLDEKLLRQFLTNLLSNAIKYSPEGGTVQFDLIFDADQVRFTIKDQGIGIPEKEQ 351

Query: 164 FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S +       +    V      ++  +  +            + 
Sbjct: 352 AQLFDAFYRSSNVGTISGTGLGLAIVKKCVERHQGEIAVDSEVGKGTTFIVTIP 405


>gi|153832261|ref|ZP_01984928.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
 gi|148871572|gb|EDL70427.1| sensory box sensor histidine kinase/response regulator [Vibrio
           harveyi HY01]
          Length = 867

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 61/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           ++  +  +  +    +   + + H+I +P+ AI    E+L E    +E   L+ L   SA
Sbjct: 361 LSDEVKKSARATKAKSEFLANMSHEIRTPMNAIMGFSEILLESEKRNEQRSLLHLLHKSA 420

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
              +  +     Y+              D    +     +               + +  
Sbjct: 421 GNLITLINDILDYSKVEAGKLTLIEEPFDLRELVESSTALCAYQANKKDLKLLVDMPLDI 480

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARF- 160
               I       +ILLNL   A      G     +T       N   F +   G      
Sbjct: 481 HAHVIGDRGRINQILLNLIGNAVKFTEEGHILIKITEKRTPQGNVYCFDVIDTGIGIPEE 540

Query: 161 --PEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P    +    +       +   +       L       L            S  L+
Sbjct: 541 RLPHIMDKFEQVDNSITRKYEGTGLGLAISKRLVQMYGGDLSVTSTLGSGSCFSFSLK 598


>gi|42522211|ref|NP_967591.1| putative two-component sensor histidine kinase [Bdellovibrio
           bacteriovorus HD100]
 gi|39574742|emb|CAE78584.1| putative two-component sensor histidine kinase [Bdellovibrio
           bacteriovorus HD100]
          Length = 640

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 70/230 (30%), Gaps = 18/230 (7%)

Query: 2   AKNICF---NLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----L 52
            ++       L S  + A  LL   I H++ +P+  + +  ++L +   E   +      
Sbjct: 407 TQSRELYLRMLQSEKMGAIGLLAGNIAHELNNPLTGLRSLSQVLLQEAEEGSNLHSDLVE 466

Query: 53  IRLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           I  ++  +   +K +              SVD ++                +    +   
Sbjct: 467 IEKATARSQRIIKNLLDFSKGEDQPSEYISVDEVVERTLPMLKSALRTHRLEVDLQTLGS 526

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ NL   A  ++   G++++         +  ++  G      +   +
Sbjct: 527 TVYVEPHLLQQVVFNLINNACQAMKDPGRLSLRTSLVNGSVVLEIEDTGPGI-PEDIRRR 585

Query: 167 IVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +  +     +       +  +    +    +D H    + +L 
Sbjct: 586 IFEPFFTTKKEGLGTGLGLSMSKSVIEKFGGTIEFRNVDPHGTCFTIVLP 635


>gi|288937701|ref|YP_003441760.1| integral membrane sensor signal transduction histidine kinase
           [Klebsiella variicola At-22]
 gi|290513209|ref|ZP_06552570.1| two-component system, NtrC family, sensor histidine kinase HydH
           [Klebsiella sp. 1_1_55]
 gi|288892410|gb|ADC60728.1| integral membrane sensor signal transduction histidine kinase
           [Klebsiella variicola At-22]
 gi|289774306|gb|EFD82313.1| two-component system, NtrC family, sensor histidine kinase HydH
           [Klebsiella sp. 1_1_55]
          Length = 464

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 76/232 (32%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIR 54
            ++    L +      LVAL  L + + H+I +P+ +I    +   +      E  QL +
Sbjct: 223 RRSRQQLLEAMARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPPGGEAQQLAQ 282

Query: 55  LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
           + +  A    + +       R A      VD    +    Q++           +     
Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQPVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                   +    ++LLNL++ A  ++ R G + +S  ++  +     +  +G      E
Sbjct: 343 ELTTINADADRLNQVLLNLYLNAMQAIGRDGVIHVSASEADRQRVKIVVTDSGKGMSDEE 402

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I      +  D   +    V  +  ++   +  E       + +  L 
Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453


>gi|228986322|ref|ZP_04146459.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773349|gb|EEM21778.1| hypothetical protein bthur0001_30040 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 448

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDAIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 448


>gi|229151412|ref|ZP_04279615.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550]
 gi|228631955|gb|EEK88581.1| hypothetical protein bcere0011_29570 [Bacillus cereus m1550]
          Length = 448

 Score =  120 bits (300), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +       G +   V++ +   I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDAGTIEFFVEELEYSVIISISDNGIGMEKEE-MER 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|319651812|ref|ZP_08005937.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396464|gb|EFV77177.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 591

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +PI +I    E L +  +E     ++ + +I   S      ++ +     
Sbjct: 365 FVANVSHELKTPITSIKGFSETLLDGAMEDKQALNDFLSIILKESDRLQSLIQDLLDLSK 424

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKILL 120
                   +       D L  +  I +       +  + Q                ++ +
Sbjct: 425 IEKQGFSLSIQQLDLTDVLEDVMAIMKGKAAEKEIVFKYQRDEKPVYIEGDIHRLKQVFI 484

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           N+   A +  P  G + IS   + +  +  ++  G      E   +I +           
Sbjct: 485 NIISNAISYTPNQGVIYISAAKTGSTVLTEIRDTGIGIEASEIP-RIFERFYRVDKARSR 543

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  L   +K  +  +            L K
Sbjct: 544 NSGGTGLGLAIVKHLVEAHKGSISVKSEVGKGTSFIIELPK 584


>gi|228927701|ref|ZP_04090750.1| hypothetical protein bthur0010_24070 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229125037|ref|ZP_04254202.1| hypothetical protein bcere0016_53080 [Bacillus cereus 95/8201]
 gi|228658413|gb|EEL14088.1| hypothetical protein bcere0016_53080 [Bacillus cereus 95/8201]
 gi|228831951|gb|EEM77539.1| hypothetical protein bthur0010_24070 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 413

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404


>gi|219848910|ref|YP_002463343.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219543169|gb|ACL24907.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 1016

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 76/240 (31%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
           + +     +    L AL  L S + HD  + + +I   ++LL     +  + + +R    
Sbjct: 637 LQRAREQLIERDRLRALGELSSGVAHDFNNLLASILGHVQLLLNEYHDPRLQEGLRAIEL 696

Query: 58  ------MSAIIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIA---------VDKRVQ 101
                  +      F + +      +VD    + +   +               ++ R  
Sbjct: 697 AAIDGAATIKRLQGFAQTSQSTPQGAVDLNQVVEESLALTRPRWRDEAQSRGIVIEVRTD 756

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI------FSLKING 155
           +         +    ++++NL + A  +LP GG +TI    +  E          ++ NG
Sbjct: 757 LEPLPIITGDAPALRELIINLVLNAIDALPNGGTITIRTTPAPPEVFGAAGVLLVIQDNG 816

Query: 156 NLARFPEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                P    +I      +  +    +    V  +  ++  R+  E       +    L 
Sbjct: 817 VGI-DPALHERIFAPFFSTKGVRGTGMGLAIVRGIVQQHGGRITLESEPGKGTMFQIWLP 875


>gi|254412814|ref|ZP_05026587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180549|gb|EDX75540.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 409

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 74/238 (31%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNL-SSMDLV---ALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50
           +   +   L    +L    + + S + H+  +P+  I++S E+L+      +   + +  
Sbjct: 169 LESQLRLALAQEQELSHFKSRIISTVSHEYRTPLTTINSSAEILERYLHKLDAEKQRKHF 228

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q I+LS       ++ +                        + I    ++ V    +   
Sbjct: 229 QRIQLSVKHLTALVEDVLFINKAELEKVEFNPEPIYLVSFFEEIVEGLQITVDEKHQLFF 288

Query: 111 LSRERA-----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                            +++ NL   A    P+GGK+T+++   +N+ +F ++  G    
Sbjct: 289 THHGSCECANLDPKLLRQMITNLLSNAIKYSPQGGKITLNLSCEENQVVFQVQDKGIGIP 348

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F          TI    +    V      +   +  +         +  L 
Sbjct: 349 QADQAKLFESFSRAGNVGTIAGTGLGLSIVKKCVDLHGGEITVKSEVGFGTTFTVTLP 406


>gi|218903777|ref|YP_002451611.1| sporulation kinase B [Bacillus cereus AH820]
 gi|301054180|ref|YP_003792391.1| sporulation kinase B [Bacillus anthracis CI]
 gi|218538315|gb|ACK90713.1| sporulation kinase B [Bacillus cereus AH820]
 gi|300376349|gb|ADK05253.1| sporulation kinase B [Bacillus cereus biovar anthracis str. CI]
          Length = 422

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413


>gi|159897348|ref|YP_001543595.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890387|gb|ABX03467.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 393

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 69/224 (30%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIR 54
               L    L A+  L + I H+I +P+ A  N+L L        + E  +       + 
Sbjct: 167 EAALLQGARLAAVGQLSASIAHEINNPLYAARNALLLLEEDLPEEVRESTVMQLARDQLT 226

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----ID 110
             +        F R   G     D    + +   +       +  +            + 
Sbjct: 227 RIAGIIERMRDFYRPMRGEMAPTDLNAVIEETLALAGLHARHNNTMITFTPDIHLPAVVC 286

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            + +  ++ LNL + A  ++  GG +T++ + + +     +   G      +    + + 
Sbjct: 287 NADQLRQVFLNLVLNALDAMTNGGTLTVTTEAATSFVTIEICDTGTGI-PDDIRAHLFEP 345

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  ++  ++  +           +L 
Sbjct: 346 FFTNKPNGTGLGLPISAHIVTQHGGQIEVDSTVGVGSTFRVVLP 389


>gi|78045212|ref|YP_360676.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77997327|gb|ABB16226.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 602

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 71/238 (29%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----- 54
            +     + +  + AL  L + + H+I +P+  +    E L E   E++V +L R     
Sbjct: 353 KQKSAELIQTEKMAALGLLAAGVAHEINNPLATVSAYAEDLLERIAEEDVRELHRSGELA 412

Query: 55  -----------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQV 102
                               L F R   G+   ++    L D   +       +  +V+ 
Sbjct: 413 RYLQVIGKQIERCKKITGSLLNFARQPAGHMIDINLNELLEDTLALVNHRIKQLGIQVEK 472

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLA 158
            +  +   +  + +++   L  +   +L              +  + + +  +   G   
Sbjct: 473 EFNVDLPVVKGDLSQLQQVLLNIIGNALDAMETTGGRLKLVTEKREKDLVIKIIDTGTGI 532

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   ++ D    +        +       +  E K  +           ++ +L 
Sbjct: 533 AQEELK-RVFDPFYTTKPLGKGTGLGLSICYGIVKEMKGDIQISSSLGKGTTVTIILP 589


>gi|325571476|ref|ZP_08146976.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC
           12755]
 gi|325155952|gb|EGC68148.1| sensor histidine kinase VicK [Enterococcus casseliflavus ATCC
           12755]
          Length = 613

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 70/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   +D           +             L   R
Sbjct: 383 FVSNVSHELRTPLTSMRSYIEALSEGAWKDPEIAPNFLKVTLDETDRMIRMINDLLSLSR 442

Query: 69  LAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
           +  G +      I   ++         ++    +    ++  +T  ++ +  +     ++
Sbjct: 443 MDSGNSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREFTKRELWVEVDTDKMIQV 502

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T+ + ++ N  + S+   G      +    F +    +    
Sbjct: 503 IDNIMNNAIKYSPDGGIITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARA 562

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  ++       +L 
Sbjct: 563 RQQGGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLP 603


>gi|300088403|ref|YP_003758925.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528136|gb|ADJ26604.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 443

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 20/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---------RLSSMSAIIRLKFMR 68
             + I H++ +PI ++    E L E  + D+ +                       +  R
Sbjct: 226 FVANISHELRTPIASLKLLAETLKEGAMADQEVAADFLNRISVEADKMGQLVDELGELSR 285

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGEKIDLSRERAKILL 120
           +  G        +  G +   +   +               V         +    ++L+
Sbjct: 286 IESGAAPLDKRPMDAGAVMTTVVGRLQNQADRAKLTLEVATVDGLPAVRADAGRIEQVLM 345

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177
           NL   A    P GG++T++   S+      +   G      +    F +    +   +  
Sbjct: 346 NLTHNAIKFTPAGGRITLTAGISEKGIEIKVTDTGAGITADDLPRIFERFYKADKARSGG 405

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +       + H +   +  E        +S  L K
Sbjct: 406 GTGLGLAIAKHIVHAHGGEIRAESSPGQGTTISFTLPK 443


>gi|229152870|ref|ZP_04281053.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550]
 gi|228630690|gb|EEK87336.1| hypothetical protein bcere0011_44020 [Bacillus cereus m1550]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K    +  S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVIVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|168704272|ref|ZP_02736549.1| multi-sensor signal transduction histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 253

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 21/231 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMS 59
               L +  L ++  L S I H+  + +  I NS +L         +    + I  +   
Sbjct: 17  RQQLLQAQRLSSVGELASSIAHEFNNILTTIINSAKLGSRSPDVAEKQIAFERIVKAGQR 76

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWTGEKIDLS 112
           A      M      +G+      +  + + +                 +         + 
Sbjct: 77  AAAIAGGMLGFARKSGTHRQNCDVARLVEEVLILTEKDLSKNRVHVETKFHARPVAWVVP 136

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIVDG 170
            +  +IL+NL + A  ++P GG++ I V+D    +     +   G      +    I + 
Sbjct: 137 GQIEQILVNLVLNARQAMPNGGRLKIEVRDSLDADTVEIKVADTGVGIAPDQLRL-IFEP 195

Query: 171 NVESTI------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +            +       +  ++  R+  E +       +  L K
Sbjct: 196 FFTTKQPDEYGRGGTGLGLSVCRQIIEQHHGRIRVESVAGKGSTFTVKLPK 246


>gi|218231212|ref|YP_002369468.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218159169|gb|ACK59161.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K    +  S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVIVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|167628799|ref|YP_001679298.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167591539|gb|ABZ83287.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 466

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 73/229 (31%), Gaps = 20/229 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                    + +L  + + + H++ +P+GAI   L+L+    +E   + +  +    +  
Sbjct: 234 EAQAREQARMASLGQVATWVAHEVRNPLGAIKGLLQLIQETIEERDPDGQSRRYCETAVR 293

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGE--- 107
            +    +F+     Y+      I    +  ++++            D  +          
Sbjct: 294 ESERLERFVGDLLAYSRLPQPTITEWPLANLVQEITALLEPELARQDAAIVTQIEPPGLI 353

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT 165
                 +  ++LLNL   A A++P GG + +      ++      ++  G       +  
Sbjct: 354 VRADREQMHRLLLNLIQNALAAMPSGGDIHLRALSSPTEEGLSIIVEDEGIGLPPGAEH- 412

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +    +      +       +A+ +   +  E            L 
Sbjct: 413 RLFEPFFTTREKGSGLGLAICRDIANRHGGTIRAEGAPGGGARFIVNLP 461


>gi|320355087|ref|YP_004196426.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
 gi|320123589|gb|ADW19135.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
          Length = 777

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 70/235 (29%), Gaps = 31/235 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMS 59
            S  + A+  L   + HD  + + AI    EL       D ++        +    +   
Sbjct: 391 QSQKMQAIGTLAGGVAHDFNNILTAILGYAELSQGQCPSDSLLYKNLGEIVKASERAGQL 450

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAK 117
               L+F R       S+   + + ++ +++   +  +  +               +  +
Sbjct: 451 VDQILQFSRQGEKNVSSLQLGLIVKEVLKLLRASLPANIELISDIAPNAYVKADPTQMHQ 510

Query: 118 ILLNLFMVAHASLPRGGKVTISVQD----------------SKNENIFSLKINGNLARFP 161
           +++NL   A+ +L   G                          +     ++  G     P
Sbjct: 511 VIMNLCTNAYQALEGKGGAIHVRLYTRTLSPKEGVEIGNLQHGSYVCLQVEDTGVGI-PP 569

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    +    +   +    V  + ++++  +  E I       +  L 
Sbjct: 570 EYLQRIFEPYFTTKKLHEGTGLGLSVVHGIVNDHRGAVTVESIPGKGSCFTVFLP 624


>gi|320353312|ref|YP_004194651.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121814|gb|ADW17360.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 982

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 74/231 (32%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + +     L +  L A+  L + I H+  +P+  I + L+ L +       + E+++   
Sbjct: 741 LEETQKKFLHAEKLSAIGKLSASIAHEFNNPLQGILSVLKGLKKRAILEAEDRELLEAAI 800

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTG 106
             S      ++ ++     +    +L+ +      +      D         R       
Sbjct: 801 AESDRIKELIRGLQDFNRPSSGRKTLMDVHRSLNSLLLLHKSDFKEKRIVLQRNFADNLP 860

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           + + +  +  ++LLNL   A  +    G  +TI+      +   +++  G+     E   
Sbjct: 861 QIMAVPDQIKQVLLNLLTNAADACHHPGGMITITTWHDDQQVAIAIQDTGSGIGPEEL-E 919

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I      S  +     +       +   +   +L +         +  L 
Sbjct: 920 LIFQPFYTSKPEVKGTGLGLSVSYGIVKHHGGEILVDSAPGVGSTFTVRLP 970


>gi|229110656|ref|ZP_04240220.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15]
 gi|228672724|gb|EEL28004.1| hypothetical protein bcere0018_29060 [Bacillus cereus Rock1-15]
          Length = 448

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L                + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 448


>gi|229128512|ref|ZP_04257490.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4]
 gi|228654705|gb|EEL10565.1| hypothetical protein bcere0015_29580 [Bacillus cereus BDRD-Cer4]
          Length = 448

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L                + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 448


>gi|108758345|ref|YP_628621.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108462225|gb|ABF87410.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 869

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQ 51
           A+++        L     S I HD+ +P+  I   + LL           E  + + + +
Sbjct: 607 AQDVTTRHELDRLREEYVSLISHDLRNPLHTISLRVGLLRRALREQNLEREESMTEAIQR 666

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTGEK 108
            +   +      L+  RL             L          +    V +R  +   G  
Sbjct: 667 SVAWMNTMIEDLLEGSRLESQRETLRREPRDLARFLEEVMERDVAPDVRERFHLEVPGAL 726

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  + A++   +      A    P G  +T+  Q    + + S+K  G      +   
Sbjct: 727 PPIWMDAARLERVMANLLSNAAKYSPGGQPITVRAQLQPEQVVVSVKDLGPGLSPEDAAR 786

Query: 166 QIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +  Y   L+   +  R+  E         S  L 
Sbjct: 787 VFDKYFRTQKSGASDAKGLGLGLYISRLIIEAHGGRIWVESEPGQGSTFSFSLP 840


>gi|30021337|ref|NP_832968.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29896891|gb|AAP10169.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 458

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L                + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 458


>gi|331700441|ref|YP_004397400.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
 gi|329127784|gb|AEB72337.1| multi-sensor signal transduction histidine kinase [Lactobacillus
           buchneri NRRL B-30929]
          Length = 617

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 61/225 (27%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSSMSAIIR---- 63
              S + H++ +P+ ++ + +E L +   +D  +                          
Sbjct: 380 QFVSNVSHELRTPLTSVRSYIEALSDGAWKDPKLAPKFLKVTQDETDRMIRMINDLLTLS 439

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116
                        V+       +    +  +  +   + ++T ++    R+         
Sbjct: 440 RMDSGTQKMEVELVNINELFNYVLNRFDMILKKEDHPEKTYTIKRYFTKRDLWVDLDTDR 499

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L NL   A    P GG +T  + +++N+ I S+   G      +            
Sbjct: 500 FTQVLDNLMNNAIKYSPDGGVITCRLYETRNKVILSVSDQGLGIPRKDIPHIFDRFYRVD 559

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +              ++  E ++         L 
Sbjct: 560 KARSRQQGGSGLGLAISKETVEALHGQIWAESVEGKGSTFYIALP 604


>gi|240142880|ref|YP_002967393.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
 gi|240012827|gb|ACS44052.1| putative Sensory/regulatory protein rpfC [Methylobacterium
           extorquens AM1]
          Length = 679

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 69/242 (28%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDL---VALLC-----SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           +++   L         A L      + + H++ +P+ AI    +LL E  ++ +  ++ R
Sbjct: 165 RSLLVKLQKAKADAEAASLAKSRFMASVSHELRTPLNAIIGMSDLLGETRLDADQTEMNR 224

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRV 100
             S +    L  +     ++                 D++     +         +  + 
Sbjct: 225 TVSTAGRALLAHINTILDFSRLEVGRMPAEKAPFALRDAVADAASMVVAQARSKGLAFQT 284

Query: 101 QVSWTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +V     +      R   ++L+NL   A      G       +   +   F ++  G   
Sbjct: 285 EVDDDLPQGVCGGRRHLEEVLVNLAANAVKFTADGTVSVHVRRADGDMVRFEVRDTGIGI 344

Query: 159 RFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             PE   +I +   +       +     +       L   +   +  +            
Sbjct: 345 -APEARGRIFEAFSQADETILDSFGGTGLGLAICRQLVTLHGGEIGVDSEIGVGSTFWFE 403

Query: 213 LE 214
           L 
Sbjct: 404 LP 405


>gi|145593965|ref|YP_001158262.1| ATPase domain-containing protein [Salinispora tropica CNB-440]
 gi|145303302|gb|ABP53884.1| ATP-binding region, ATPase domain protein domain protein
           [Salinispora tropica CNB-440]
          Length = 470

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 17/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
           + +       S  L     +   H++ +P+ A+H   +L L++   + + +        +
Sbjct: 236 LNEAFDQRERSEALTRTFVADASHELRTPLSAVHGWADLYLNDGITDWDGVDEAMRRIRT 295

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGE 107
              R+  +         +D+   L   E             +          + V     
Sbjct: 296 ETTRMGTLVEQLLTLARLDAHQPLARDEVDLGRVCADVLDSLRVTAAHHRLALAVDEPVT 355

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164
                    ++  NL   A    P G  + + V     + +  +   G           F
Sbjct: 356 VTGDETSLHQVAQNLVGNAVRHTPPGTAIEVRVHHGDEDVVLVVHDEGPGLDAQGLAHAF 415

Query: 165 TQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +          +    V  +   +   +  +      + ++  L +
Sbjct: 416 DRFWRADPGRAAPGGTGLGLAIVRDIVEAHGGTVALDSAPGQGLTVTVRLPR 467


>gi|315180156|gb|ADT87070.1| sensor histidine kinase/response regulator [Vibrio furnissii NCTC
           11218]
          Length = 579

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 61/246 (24%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + +   L            + + H++ +P+ A+   ++LL +     + 
Sbjct: 185 LQKLVDLKTRELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDDSDAYQQ 244

Query: 50  MQLIRLSSMSAIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ + + ++                   ++  +               +      I
Sbjct: 245 DMLEQMENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDI 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
             + +  +    E    S    +IL N+   A      G      V          +K +
Sbjct: 305 TFNVKASICEQFEYWVDSVRLTQILFNIIGNAIKFTHHGFVDVSLVTARDR-LEIEVKDS 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      E+   +    +              +       L       +          +
Sbjct: 364 GIGI-DNERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSL 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTISIP 428


>gi|301311913|ref|ZP_07217835.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300830015|gb|EFK60663.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 491

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 51/227 (22%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K+   +L    L +   + + H+I +P+ AI    ++L      +   Q I +   +  
Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316

Query: 62  IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
                      +  +          D        +        + + V++          
Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPRISENVRLILDDSPNVSL 376

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +   IL  L   A     +G               F +   GN     +      
Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436

Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       L       +     +      S  L 
Sbjct: 437 RFLQLNEFEPGTGLGLSICKGLVTAMGGTIWVNSEEGKGSTFSFKLP 483


>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1175

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 75/233 (32%), Gaps = 21/233 (9%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56
            ++I        +     S + H++ +P+ +IH SL +L       +      ++ +   S
Sbjct: 933  QDITDRKQIERMKDEFISIVSHELRTPLTSIHGSLGMLASGLLKADSEEGKRMLYIAVDS 992

Query: 57   SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106
            +   +      + +    +G V       ++E +I + + V + +           S + 
Sbjct: 993  TDRLVRLINDILDIERIESGRVKMEKQCCNVEDLITEAVNVVQALANKVEVTLSVSSLSI 1052

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                      + L+NL   A      G  V ++VQ      +F +K  G      +    
Sbjct: 1053 SLWADPDRIVQTLINLLSNAIKFSHTGKIVWLTVQQQDRHLLFIVKDEGRGIPTEKLESI 1112

Query: 164  FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +       +   +       +  ++   +  E +     +   ++ 
Sbjct: 1113 FERFQQVDSSDSRNHEGTGLGLAICRSIVQQHDGHIWVESVLGEGSIFYFMIP 1165


>gi|253565691|ref|ZP_04843146.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945970|gb|EES86377.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 812

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  L +   + I H+I +P+ AI    +LL   D+   ++E  + I+ ++
Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
              +     +                 V        + Q + + +     +Q+       
Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYMPKPVCLYQFCAMMVQKMRNKVPEGVELQIDEDSPLD 694

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    +++ N    A     RG        D++ +    ++  G      E   
Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHRGTITVGYRIDARQQLEMFVEDTGIGISI-ENQE 753

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  +  +S +    +       +  +    +               L 
Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804


>gi|229194198|ref|ZP_04321054.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876]
 gi|228589289|gb|EEK47252.1| hypothetical protein bcere0002_57900 [Bacillus cereus ATCC 10876]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|254828075|ref|ZP_05232762.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
 gi|258600459|gb|EEW13784.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           N3-165]
          Length = 591

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65
            ++ +   + + H++ +P+ A+    E L +  + DE++       +   S     + + 
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSR 113
            + L+      V   + L ++++VIE        +                +        
Sbjct: 423 ILALSRIEQNPVPENVELVEVDEVIEQSARTIFEMATEKNIQVIIPEKTIPSVTIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIEQEAEAIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLPK 589


>gi|229190738|ref|ZP_04317733.1| hypothetical protein bcere0002_24050 [Bacillus cereus ATCC 10876]
 gi|228592763|gb|EEK50587.1| hypothetical protein bcere0002_24050 [Bacillus cereus ATCC 10876]
          Length = 360

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 74/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTQNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG ++IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLSISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLTITFPK 354


>gi|110801444|ref|YP_699043.1| sensory box histidine kinase [Clostridium perfringens SM101]
 gi|110681945|gb|ABG85315.1| sensory box histidine kinase [Clostridium perfringens SM101]
          Length = 571

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 64/222 (28%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
            ++ +   + I H++ +P+ +I    E L    +    ++ + +I   S      L+ + 
Sbjct: 348 ENMRSQFVADISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407

Query: 69  LAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
             +                + +  +  +         V+  +        +    +  ++
Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTHSNCVLMGDKDKFKQM 467

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           LLNL   +     +GGKV +   +     I  ++ NG      +   +I +         
Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +           +   + 
Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568


>gi|332669345|ref|YP_004452353.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
 gi|332338383|gb|AEE44966.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           fimi ATCC 484]
          Length = 589

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 59/227 (25%), Gaps = 23/227 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRL 64
            +  L     S + H++ +P+ ++   LELL +        +   + +I  ++   +  +
Sbjct: 356 EAARLKDEFVSLVSHELRTPLTSVLGYLELLLDGTDELTEEQRSYLTVIERNARRQLRLV 415

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRE 114
             +                 +D    +      +           V+       +     
Sbjct: 416 GDLLLTAQVDAGTFAISPRPIDLADVVRGSATSLGPVAEQAGVALVTSVAPTPVVADPGR 475

Query: 115 RAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            A+++ NL   A    P GG+V               ++  G      E   ++      
Sbjct: 476 LAQVVDNLVSNAVKFTPSGGEVHLEVAPTPDGGAGVLVRDTGIGIAPDEL-QRLTTRFFR 534

Query: 174 ------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   I    +       +   +  RL  E            L 
Sbjct: 535 ATSATRRAIPGVGLGLAIARAVVDAHGGRLDVESTLGEGTTFVVTLP 581


>gi|320353492|ref|YP_004194831.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
 gi|320121994|gb|ADW17540.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
          Length = 525

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 14/218 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------- 59
            +  L AL  L + I H+I +P+  + N +  + +     +V +                
Sbjct: 291 RAEKLAALGQLTAGIAHEINNPLAGMLNCVSAMQKEPENLDVQKRYLPLLHKGLKRIELT 350

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
               L + R+       VD    + D  + +      +   + + +       +    +I
Sbjct: 351 MRQLLNYGRVDPLQVHQVDIDTVILDCLELLGHRLRNIVVNLDLHFNALCCIDTEAIKQI 410

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-- 176
           ++N+ + A  ++P GG + ++ ++     +  ++  G      E   +I D    +    
Sbjct: 411 VMNIALNAIQAMPDGGSLLLATREETGSVVLIIEDTGIGI-AREIQDRIFDPFFTTKEVG 469

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +     + +      ++            +  L 
Sbjct: 470 EGTGLGLAVTLAMVQRLNGQIEVRSEPGSGSTFAVTLP 507


>gi|218128651|ref|ZP_03457455.1| hypothetical protein BACEGG_00222 [Bacteroides eggerthii DSM 20697]
 gi|217989106|gb|EEC55421.1| hypothetical protein BACEGG_00222 [Bacteroides eggerthii DSM 20697]
          Length = 527

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 62/234 (26%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +   LS  +      A   + + H+I +P+ +I    +L+ E   + +  +  R+ 
Sbjct: 292 MMEQLRDALSKAEQADTLKAQFIANMSHEIRTPLNSIIGFSQLMAEAENQTDRDEYNRII 351

Query: 57  SMSAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106
           S++  +            M  +   +   D        +++           +V +    
Sbjct: 352 SLNNNLLLNLFEDVLNLSMLDSDNMSFKNDEFDFSAMFDELAVLMREKVSNPEVEFICEN 411

Query: 107 -----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          +++ NL   A     + G + +      +     ++  G      
Sbjct: 412 PLQTLMVKTDRERLTQVIGNLITNAAKFTGQ-GYIKMGYARKNDGVQIYVEDTGLGIEEK 470

Query: 162 EKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          I    +       + ++    +  E            L 
Sbjct: 471 NLVEVFDRFKKLNVFIQGTGLGLPICKSIVNQMGGEIWVESEYGKGSTFYVWLP 524


>gi|307154213|ref|YP_003889597.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306984441|gb|ADN16322.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 681

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 62/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51
            ++I   L        L     +   H+  +P+  I +S EL++      +   +   +Q
Sbjct: 418 EQDIRHALEKEKQLNELKTRFVTMTSHEFRTPLAIILSSAELIEHYAHKLDEKKKMTHLQ 477

Query: 52  LIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            I+ +       L                    +        + + ++   +    V  +
Sbjct: 478 RIQTAVKHMTGLLNDVLVLGKAEAGKIEFMPTPISLAQFCRQLVEEVQLTTSTHTIVFCA 537

Query: 104 WTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     ++    IL NL   A    P    V   +     + IF ++  G      
Sbjct: 538 HNQCPNGCLDQQLLRHILTNLLTNAIKYSPESSLVQFDLICESQKVIFRIQDQGIGIPAN 597

Query: 162 EKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+          S +       +    V      +  ++  E         +  L 
Sbjct: 598 EQPELFNSFFRASNVGSISGTGLGLSIVKKAVDLHGGQIEVESRLGEGTTFTVKLP 653


>gi|70732582|ref|YP_262345.1| sensory box histidine kinase [Pseudomonas fluorescens Pf-5]
 gi|68346881|gb|AAY94487.1| sensory box histidine kinase [Pseudomonas fluorescens Pf-5]
          Length = 984

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 25/239 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          I +
Sbjct: 738 LTETQTLEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELTEISE 797

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           ++++  +  S      + F                +       +  +      V      
Sbjct: 798 QILEQTKRISRIVQSLMSFAHAGSHQHNDEAVCLAEVAQDAIGLLALNRRNFEVQFFNLC 857

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +  A++L+NL   A  + P G  V +  +  ++     ++  G+      
Sbjct: 858 DPDHWVDGDPQRLAQVLINLLSNARDASPPGSAVRVKSEAFEHTVDLIVEDEGSGIPKN- 916

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
              ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 917 IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPQSQRGTRIRVTLPR 975


>gi|15613099|ref|NP_241402.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10173149|dbj|BAB04255.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 502

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
            K     + S  L A+  + + + H++ SP+ AI  + +L+            ++  I+ 
Sbjct: 261 RKMEVQLIHSGKLAAIGEMAAGVAHELNSPLTAILGNSQLILRDVKGHDPLFPLLTDIKN 320

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
                   +  +         V     + D        +       +  ++     +   
Sbjct: 321 CGNRCKRIINSLLTFSRQEEFVFEACAINDAVNETLNLLKYQLQKEEVVIKTDLQEDIPL 380

Query: 111 LSRERAKILLNLFMVA-------HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   +A+I   +  +          +L    +V I      NE   S+  NG      E+
Sbjct: 381 IEGNQAQIEQIIINLLLNAKDALEEALSDKKEVLIKTWFQYNEVHLSVTDNGIGI-EEER 439

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I      +    +   +     I +A  +   +               L 
Sbjct: 440 LAEIFHPFHTTKSSKEGTGLGLSVSIGIAKSHGGTIDVHSKHKKGSTFILRLP 492


>gi|319893720|ref|YP_004150595.1| Two-component sensor kinase SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317163416|gb|ADV06959.1| Two-component sensor kinase SA14-24 [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 610

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 62/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+E          + + + R  +   I  +  +     
Sbjct: 380 FVANVSHELRTPLTSMNSYIEALEEGAWRDESIAPQFLSVTREETERMIRLVNDLLHLSK 439

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                +++        +  + I     +    T    D+ RE            ++  N+
Sbjct: 440 MDNETETITKEIVDFNMFINKIINRHEMAAKDTTFVRDIPRETIFTEVDPDKMTQVFDNV 499

Query: 123 FMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
              A        +V   V+ +         +K NG      +                  
Sbjct: 500 ITNAMKYSRGEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRK 559

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 560 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 598


>gi|256828151|ref|YP_003156879.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577327|gb|ACU88463.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 24/232 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSA 60
                +  +    ++ +   H++ +P+ ++  S++LL E    +   +  +L+  +    
Sbjct: 375 TRLKQVEQLKSDFVMAA--SHELRTPLTSLGMSVDLLLEHASHNLAEKDRELLLAAHEEV 432

Query: 61  IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108
                                      V        ++ V +  + + +   VS      
Sbjct: 433 HRMKSLVSDLLDLSKIEAGRIEMEFEDVPVATFFEHMQSVFKSQMELKEVAFVSGIQGDL 492

Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 + + A +L NL   A   + RGG V +  Q        S+K +G      E   
Sbjct: 493 PLVRADANKIAWVLSNLVSNALRYVNRGGCVALMAQQFGAHVHLSVKDDGLGI-PEEYQA 551

Query: 166 QIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I    V+          +       +   +   +  E +       +  L 
Sbjct: 552 RIFHKFVQVKGQEAGGSGLGLAICKEIVRAHGGTIWVESVPGRGSTFTFTLP 603


>gi|219854731|ref|YP_002471853.1| hypothetical protein CKR_1388 [Clostridium kluyveri NBRC 12016]
 gi|219568455|dbj|BAH06439.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 470

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
           N+   L + + L   L + + H++ +P+  + + +E + +       + +       M  
Sbjct: 240 NLAETLQNQENLRKRLTADVSHELRTPLTTLQSHMEAILDGIWEPTQDRINSCHGEIMRI 299

Query: 61  IIRLKFMRLAFGYTGSVDSLI-------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +  +     Y G    L         +     +  +   V K +   +    I +  
Sbjct: 300 NRMVNDLEKLAEYEGENLILNKSEFNISEVVKNIMLNFENEYVSKEIDFIFNSRDIFICA 359

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           ++    +I++NL   A     +GGKV I V +        ++ NG      +    F + 
Sbjct: 360 DKDKISQIIINLISNALKYTRQGGKVLIQVDNKNEYLELIVQDNGQGIPKEDLPYIFERF 419

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           I       L   +K ++  E   +        + 
Sbjct: 420 YRADKSRNRLTGGAGIGLTITKSLVEAHKGKITVESELNKGTTFKVSIP 468


>gi|153954119|ref|YP_001394884.1| sensory transduction histidine kinase [Clostridium kluyveri DSM
           555]
 gi|146347000|gb|EDK33536.1| Predicted sensory transduction histidine kinase [Clostridium
           kluyveri DSM 555]
          Length = 461

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
           N+   L + + L   L + + H++ +P+  + + +E + +       + +       M  
Sbjct: 231 NLAETLQNQENLRKRLTADVSHELRTPLTTLQSHMEAILDGIWEPTQDRINSCHGEIMRI 290

Query: 61  IIRLKFMRLAFGYTGSVDSLI-------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +  +     Y G    L         +     +  +   V K +   +    I +  
Sbjct: 291 NRMVNDLEKLAEYEGENLILNKSEFNISEVVKNIMLNFENEYVSKEIDFIFNSRDIFICA 350

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           ++    +I++NL   A     +GGKV I V +        ++ NG      +    F + 
Sbjct: 351 DKDKISQIIINLISNALKYTRQGGKVLIQVDNKNEYLELIVQDNGQGIPKEDLPYIFERF 410

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           I       L   +K ++  E   +        + 
Sbjct: 411 YRADKSRNRLTGGAGIGLTITKSLVEAHKGKITVESELNKGTTFKVSIP 459


>gi|110801347|ref|YP_696443.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|168207284|ref|ZP_02633289.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|168210610|ref|ZP_02636235.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|182625884|ref|ZP_02953650.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
 gi|110675994|gb|ABG84981.1| sensory box histidine kinase [Clostridium perfringens ATCC 13124]
 gi|170661350|gb|EDT14033.1| sensory box histidine kinase [Clostridium perfringens E str.
           JGS1987]
 gi|170711264|gb|EDT23446.1| sensory box histidine kinase [Clostridium perfringens B str. ATCC
           3626]
 gi|177908918|gb|EDT71410.1| sensory box histidine kinase [Clostridium perfringens D str.
           JGS1721]
          Length = 571

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 65/222 (29%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
            ++ +   + I H++ +P+ +I    E L    +    ++ + +I   S      L+ + 
Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407

Query: 69  LAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118
             +       +++   +           + +        + +        +    +  ++
Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           LLNL   +     +GGKV +   +     +  ++ NG      +   +I +         
Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLVLVIEDNGIGISAEDLP-RIFERFYRVDKAR 526

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +           +   + 
Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVITIP 568


>gi|134300114|ref|YP_001113610.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134052814|gb|ABO50785.1| GAF sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 557

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           K     + S  LVA+  + + + H++ SP+  I  + +++           E +  I   
Sbjct: 316 KMEAQLMHSAKLVAIGEMAAGVAHELNSPMTVIIGTAQMMQRDMGPEDPRSEWLDDIIGC 375

Query: 57  SMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEK 108
            M         L F R         D    +  +  +I   I  +    +          
Sbjct: 376 GMRCKKIIQNLLSFSRQGQFALNETDINQQVEKVLSLIHYQINRNNINIIKNLDLNVPYI 435

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-------QDSKNENIFSLKINGNLARFP 161
           +    +  ++L+NL + A  +L                        + +++ NG     P
Sbjct: 436 MANGHQIQQVLINLLLNARDALEEIEGEKSIWISTTVESDQETQWVVLTVRDNGCGIH-P 494

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    S        +     + +A  +   +  E           +L 
Sbjct: 495 EGLNKIFNPFYTSKEASKGTGLGLSVSLGIAQSHGGTIKVESQQGFGSSFHFMLP 549


>gi|134299752|ref|YP_001113248.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134052452|gb|ABO50423.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 493

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 59/218 (27%), Gaps = 20/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF- 71
             + + H++ +P+  I  + E L     ++   + + +  I   S+        +     
Sbjct: 266 FVAGVSHELRTPLTIIQGNAEALLDGVIEDKDKQRDFLINIYEESLRLKRLSNELLDMRK 325

Query: 72  --------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                          S I    + ++          + +S   + + L  +  ++   L 
Sbjct: 326 IETGQVNLYKEKVNASEIFFNVVSRMQHLAKQRGIILNLSVPEQPVILYLDTDRLGQVLI 385

Query: 124 MVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTID 177
            +   +L           +D  ++    +  NG      E    + +    +     +  
Sbjct: 386 NLIDNALRFSRSEVTIELKDFPDKIKVQISDNGPGIPEAERNLVWDKFYKVDKSRSRSAG 445

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +     +         + K
Sbjct: 446 GTGLGLSIVKQLIELHGGTVCLTSREGEGTTFIFTIPK 483


>gi|222056472|ref|YP_002538834.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565761|gb|ACM21733.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 427

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 66/228 (28%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55
            K          L  +  + +R+ H++ +P+  I  S ++L         + E+M  I +
Sbjct: 198 EKVRKEMRQKDRLATMGEVVARVAHEMRNPLFGITASSQILAMELPLTAEQKELMNSILV 257

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVSWTGE 107
                   +  +                       +   E +I +      +        
Sbjct: 258 EGRRMNRLVDELLDCSKEMKLKKVPFDMVKAVRDSISFNEPLIMEKRLFLHKSFAEGEVT 317

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L+NL   A  ++  GG +TI ++    + +  +  +G          +I
Sbjct: 318 VTADQERIRQVLVNLLKNAVDAVSEGGSITIEMEGKDGKVLIRILDSGPGIPEKNL-EKI 376

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D    +      +       +   +   L+         V +  L +
Sbjct: 377 FDIFYTTKKSGTGLGLAVSRKIIEAHDGTLVAGNGPG-GAVFTITLPR 423


>gi|323463222|gb|ADX75375.1| two-component sensor histidine kinase VicS [Staphylococcus
           pseudintermedius ED99]
          Length = 610

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 62/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+E          + + + R  +   I  +  +     
Sbjct: 380 FVANVSHELRTPLTSMNSYIEALEEGAWRDESIAPQFLSVTREETERMIRLVNDLLHLSK 439

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                +++        +  + I     +    T    D+ RE            ++  N+
Sbjct: 440 MDNETETITKEIVDFNMFINKIINRHEMAAKDTTFVRDIPRETIFTEVDPDKMTQVFDNV 499

Query: 123 FMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
              A        +V   V+ +         +K NG      +                  
Sbjct: 500 ITNAMKYSRGEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRK 559

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 560 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 598


>gi|296503742|ref|YP_003665442.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296324794|gb|ADH07722.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 458

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDAIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 458


>gi|257093282|ref|YP_003166923.1| osmosensitive K+ channel signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045806|gb|ACV34994.1| osmosensitive K+ channel signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 897

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 18/232 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55
           A+     + S  L   L S I HD+ +P+  +    E +          Q      L   
Sbjct: 653 AQTTLVQMESESLRNSLLSAISHDLRTPLSVLVGLAESIRLTQPPPTDAQATIAATLKEE 712

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTG 106
           +   +      + +A    G V        +E+V+   +                     
Sbjct: 713 ALRMSTKVNSLLDMARLQAGKVQLKRQWQPLEEVVGSALMATDVSLAAHSVHTALPDDLP 772

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++L NL   A    P G  V+I     +NE    +  +G           
Sbjct: 773 LLEIDGVLIERVLCNLLDNAAKYTPAGTPVSIGAAARENEVEVWVDDSGPGLPRGREESI 832

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +   G  EST     +       +   +  R+  E            L +
Sbjct: 833 FEKFERGARESTTSGVGLGLAICRAIVEAHGGRIHAENRPRGGARFIFSLPR 884


>gi|147677087|ref|YP_001211302.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146273184|dbj|BAF58933.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 349

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/229 (9%), Positives = 68/229 (29%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           + +     + +  L     L + + H+I +P+  I   ++LL    +   +++ + +I  
Sbjct: 120 LQELENAVIKAERLAILGQLAAGMVHEIRNPLTVIGGFMQLLQKLLDGNPKEKYIHIILA 179

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGE 107
                   +           S  +   +  + + +   +  +  ++              
Sbjct: 180 ELKHVNNLISEFLQLAKPGCSRRAPCSIEKLIKDVVMLVESEAYLRKLEIDLAVTGGIPP 239

Query: 108 KIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +    +  ++ LN    +  +L       +  +    +       K NG      E   
Sbjct: 240 VMGDGEQLKQVFLNFIKNSFDALSPGGKLVLETAWDRREGFVRIVFKDNGAGM-DEETLK 298

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +    +  +   +  +    +   +  R+  +        ++ LL 
Sbjct: 299 SIFNPFFTTKENGTGLGMFINKKIIDNHGGRIEIQSEQGKGTTVTVLLP 347


>gi|119773268|ref|YP_926008.1| sensor histidine kinase [Shewanella amazonensis SB2B]
 gi|119765768|gb|ABL98338.1| sensor histidine kinase [Shewanella amazonensis SB2B]
          Length = 708

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 452 LNETRAQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRSELGDKAGQVEEEIDLV 511

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K       +++ 
Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIKKQEVVLHQELNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++              VQD        ++  G    
Sbjct: 572 SCPVQINRPQLLQVLINLVVNAAHAMDGKGRIWIRTYDWVVQDEPVGVKIEIEDEGCGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+  +I D    +  D   +       +       +          + +  L
Sbjct: 631 APEQLGRIFDPFYTTRPDGTGLGLSLSYGIIKRIGGTIEVTSTLGKGTLFTIGL 684


>gi|260768409|ref|ZP_05877343.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
 gi|260616439|gb|EEX41624.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
          Length = 681

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  + EL+     ++     E +  I
Sbjct: 435 LNQTRDKLIVHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELGEDANRVTEEIDAI 494

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSW 104
            L         + +     + G  D +        + E             ++    +  
Sbjct: 495 MLQIDRIRNITRSLLQYSRHGGVQDEITWQHVNPIIDESMTLVKTGSKKRDIEFVTDLQA 554

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                    +  +IL+NL M A  ++   GK+TI  +D          I  ++  G    
Sbjct: 555 QSSVEVNRHQLLQILVNLQMNAIHAMNGKGKLTIRSEDWCEYGDVLGAIVHIEDEGCGI- 613

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   ++ D    +  D   +       L  +    +  +         S  L 
Sbjct: 614 KPEYLKRVFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIRVQSEWGKGSTFSVYLP 668


>gi|313673000|ref|YP_004051111.1| multi-sensor signal transduction histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939756|gb|ADR18948.1| multi-sensor signal transduction histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 670

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 73/225 (32%), Gaps = 13/225 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLI 53
           M K +    +S +L  +L S + HD  + +  I N L ++ E   + E+       +   
Sbjct: 447 MTKELEQYKASKNLE-MLVSGLAHDFNNLLAGISNYLIIIKEKNKDPEIELLLERTLAAY 505

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           + ++      L F +        VD    +     +      V   +  ++         
Sbjct: 506 KRAANLVKQILSFSKGIQLNYSDVDIADLIRQSLSLNTAGKNVKTNLIDNYNKNIKCDPN 565

Query: 114 ERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +++  N+ + A  S    GK+         D  +     +K NG      EK  +I  
Sbjct: 566 LISEVFDNIIINALQSTTDNGKIDILLEPYKIDDVDFVSIKIKDNGCGI-PREKIDKIFQ 624

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +  Y V L+  ++   +  +  +        +L 
Sbjct: 625 PLYTTKSKGSGLGLYMVKLIVEKHGGIIKVDSEEGKGTTFQVILP 669


>gi|268317058|ref|YP_003290777.1| Histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334592|gb|ACY48389.1| Histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 919

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 69/237 (29%), Gaps = 24/237 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56
           +     L  +D L     S I H++ +P+ +I    E++            E + +I   
Sbjct: 664 QAANERLKELDRLKDEFISTITHELRTPLTSIRAFSEIMHANPNLPEAQRQEFLGIIIKE 723

Query: 57  SMSAIIRLKF-MRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGE 107
           +      +   + L    +G+V+  +    +++        +          + VS    
Sbjct: 724 AERLTRLINQVLTLQKLESGTVELNLEPVRMQEVIEEAVEAIQPHVQFNGITLTVSVPET 783

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPE- 162
              +  +R +++  L  +   ++         +        +     ++ NG      + 
Sbjct: 784 PCYVLGDRDQLVQVLLNLLSNAVKFCNPEDGRIAVRLLVEPDRVRVDVEDNGPGIAPEDQ 843

Query: 163 ----KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  + V  +         +       +   +  R+  E    H    S  L +
Sbjct: 844 ATIFDKFRQVHTSTGRRPPGTGLGLAIAQRIVQHHHGRIWVESEPGHGATFSFTLPR 900


>gi|94308986|ref|YP_582196.1| osmosensitive K+ channel signal transduction histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93352838|gb|ABF06927.1| osmosensitive K+ channel signal transduction histidine kinase
           [Cupriavidus metallidurans CH34]
          Length = 967

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 70/232 (30%), Gaps = 18/232 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------------E 46
           A+    ++ S  L + L + + HD+ +P+  +    E L    +               +
Sbjct: 717 AQRALVSIESERLRSSLLAAVSHDLRTPLTGLIGMAETLQRAEMPLPASVAETVEAMRVQ 776

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + M+ + ++ +                 S++ LIG               + + +    
Sbjct: 777 AQRMRTMVVNLLDMARLQHHDLALKRGWQSLEELIGAALASMRDVLGRHHVEVMNLVELP 836

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++L NL   A    P G  + I      +E   S++  G   +  +    
Sbjct: 837 LVECDDVLMERVLCNLLENAAKYTPAGTAIRIRGAVVGDEVQLSVEDEGPGVQSGQERYI 896

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +   G  ES      +       +   +  R+  E    H    +  L +
Sbjct: 897 FEKFTRGERESATSGVGLGLAVCEAIMQAHGGRIWVEAAHPHGSRFTLALPR 948


>gi|332799516|ref|YP_004461015.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332697251|gb|AEE91708.1| integral membrane sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 572

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 70/233 (30%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSS 57
           K++       DL       I H++ +P+  +    E L +         D  + +I   +
Sbjct: 337 KDVTRERKLEDLRKEFLGDISHELRTPLTYLQGYTEALLDGLVENREEHDRYLNVILEET 396

Query: 58  MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +     +             + +        D +  +      I D   ++ ++++    
Sbjct: 397 LRLRRLVDELLQLSHIEAGHLNIKKDRVSIKDLIERVSKKVLPICDDKNIELKIEIEDIP 456

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++++NL   A        K+ I  Q  K   I S+K +G+     E    
Sbjct: 457 SITADEDRIEQVMINLIDNAVRYSSNDSKIIIKAQSCKEGIIISVKDSGSGIPEDELPFI 516

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +           +    V  +   +  R+  +   +     S L+ 
Sbjct: 517 WERFYKVDKSRTRQKSGTGLGLAIVKKIVELHGGRVWAKNCPEGGAEFSFLMP 569


>gi|153806245|ref|ZP_01958913.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
 gi|149130922|gb|EDM22128.1| hypothetical protein BACCAC_00500 [Bacteroides caccae ATCC 43185]
          Length = 500

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 57/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIR 54
           A+        + +  L  + + H+I +P+ AI    ++       L +    D V  +  
Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIASTYNELSDEERADFVRLISI 319

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SW 104
            S     +    + L+   + ++        ++ +++D        Q+            
Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTYSCCSLKSMMKDIEKEQAVKQLPEIEIKALLPDD 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +    +++ N    A              S  +        ++  G       
Sbjct: 380 DIYINTDATRLKQVICNFINNARKFTEKGYIHFGFTSHSEKDQLVYLFVEDTGEGIPQEC 439

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +      +       +    +  +  E            L 
Sbjct: 440 QKEIFDRFYKVNTFKQGTGLGLSICKTIVEHLQGSISVESEIGKGSRFIVTLP 492


>gi|228946261|ref|ZP_04108589.1| hypothetical protein bthur0007_24080 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228813395|gb|EEM59688.1| hypothetical protein bthur0007_24080 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 413

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404


>gi|219847337|ref|YP_002461770.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219541596|gb|ACL23334.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 793

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 66/243 (27%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQ 51
           AK     + +  + A+  L   I HD  + +  I  S+EL       D         + Q
Sbjct: 408 AKLQAQLVQAQKMEAIGQLAGGIAHDFNNILTVITGSVELAMLEIDSDHAIYPELEAIRQ 467

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +       L F R   G    VD    + D   ++   I    ++Q+        +
Sbjct: 468 SAARAGELVRQLLTFARRQPGQPQLVDVNRQINDTMNMMRRLIGEHIQLQLQLDEHIERV 527

Query: 112 SRERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKI 153
             + A++   L      A  ++P                     +    +    + S+  
Sbjct: 528 MIDPAQLEQVLINLVVNARDAMPNGGELTIRTTSQYFSVNDLPPLRQIQAGKYVLLSVCD 587

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      +    I +    +        +       +  ++   L  +    +    + 
Sbjct: 588 TGVGI-AEQIRPHIFEPYFTTKPMGQGSGLGLAICDGIVTQHGGFLTVDSQPGYGSCFTV 646

Query: 212 LLE 214
            L 
Sbjct: 647 ALP 649


>gi|189220110|ref|YP_001940750.1| Signal transduction histidine kinase with PAS domain
           [Methylacidiphilum infernorum V4]
 gi|189186968|gb|ACD84153.1| Signal transduction histidine kinase with PAS domain
           [Methylacidiphilum infernorum V4]
          Length = 398

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 76/238 (31%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD---------------EVG 44
            +     + S  L  + +L + + H++ +PI A+    +L++               +  
Sbjct: 139 REKTLEAIESEKLNLLTMLAAGVAHELGNPINALGIHFQLIEKKYKKLLQQKNGQIGDKE 198

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS----LIGLGDIEQVIEDFIAVDKRV 100
           IE+    +         I  +F++        +       +    +E +  +   +D  +
Sbjct: 199 IENSFAAIRSEIRRLDGIINQFLKAIRPSPPKLRLLSLNQVLKQAVEFLSPEIQNLDILI 258

Query: 101 QVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           ++        L  +R ++    +        ++ + G + IS     +  I S + NG  
Sbjct: 259 EMDLDQGLPLLRADRNQLKQAFYNILKNGIEAVGKNGIIKISTHADDSFLIVSFQDNGTG 318

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               E  + +      +      +    V  +  ++   +  E        +  LL +
Sbjct: 319 I-AQEAMSHLFKPYFTTKSSGTGLGLLIVRRIIRDHGGEVQIESQKGKGTTVKILLPR 375


>gi|182413565|ref|YP_001818631.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840779|gb|ACB75031.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 1452

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 64/225 (28%), Gaps = 21/225 (9%)

Query: 10   SSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLK 65
            S ++ + +L   I HD  + +  I  +L L              +     ++  A    +
Sbjct: 1083 SKLESLGVLAGGIAHDFNNLLTVIMGNLSLAKIDPKIEPDTVRCLSESERAAARARDLTQ 1142

Query: 66   FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRERAKILL 120
             +         +     L D+ +    F     +V+  +              + A+++ 
Sbjct: 1143 QLLTFAKGGEPMRMPTRLPDLVREAAQFALHGAKVRCDYQIASDLWPASVDRGQIAQVVH 1202

Query: 121  NLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            N+ + A+ ++P                  S  +       ++  +G      E   +I +
Sbjct: 1203 NIVINANQAMPTGGRIEIGLQNEMVLEPRSGLEPGRYVRMTVADSGAGI-PAETLGRIFE 1261

Query: 170  GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +    V  +   ++  +    I       +  L 
Sbjct: 1262 PYYSTKPQGTGLGLATVYSIVRRHEGHIEVRSIVGEGTTFTTWLP 1306


>gi|196032662|ref|ZP_03100076.1| sporulation kinase B [Bacillus cereus W]
 gi|254722622|ref|ZP_05184410.1| sporulation kinase B [Bacillus anthracis str. A1055]
 gi|195995413|gb|EDX59367.1| sporulation kinase B [Bacillus cereus W]
          Length = 422

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413


>gi|119944485|ref|YP_942165.1| C4-dicarboxylate transport sensor protein ATPase subunit
           [Psychromonas ingrahamii 37]
 gi|119863089|gb|ABM02566.1| sensor protein for C4-dicarboxylate transport, sensor protein,
           ATPase domain [Psychromonas ingrahamii 37]
          Length = 594

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 68/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           + +     + S  L  L  L + I H++ +P+ AI +  E     L+   I+        
Sbjct: 360 LRETQKELIQSAKLAVLGQLSASISHELNNPLAAIRSYAENAIIFLERDKIDKVSNNLIR 419

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104
           +  L    +  +     F R + G    +     L    ++++  +              
Sbjct: 420 ITYLTDRMAKISSQLKAFARKSNGELSIISLQPVLMASYELVKPQLKASRVLLHMNLPDK 479

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE 162
             +      +  +I++NL   A  ++    +  I +    +  +    +   G      +
Sbjct: 480 PVQVKAEPIQLEQIVVNLLSNAIQAMEECKEKQIEIILSVNGQQAQIEVIDTGIGINESD 539

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +      +       +      ++  +   D        L 
Sbjct: 540 L-AKLFEPFFTTKEMGLGLGLSISQQIIKNMHGKIWAKNRQDQGAKFCVSLP 590


>gi|218680186|ref|ZP_03528083.1| two-component sensor histidine kinase [Rhizobium etli CIAT 894]
          Length = 270

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 51/233 (21%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
                  +  L + L + I HD+ +P+ AI  +   L +           +++  +   S
Sbjct: 27  RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFTAMPEEDRSDLLSTVVDES 86

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  +                      I           +     ++ +  +   
Sbjct: 87  ERLNRFIANLLDMTKIESGAMEPNSAPHYAGDIVGSALRRAAKILEHHKTEMRIPADLPM 146

Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    + + NL   A    P G  V I      +  +  +   G      +     
Sbjct: 147 VRVDPVLFEQAIFNLLDNAAKYAPEGSVVRIEGWADADYVVVQVSDEGPGIPPADLARVF 206

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
                    D       +               +           V +  L K
Sbjct: 207 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTIAAGNRMAGQGAVFTIRLPK 259


>gi|159898794|ref|YP_001545041.1| osmosensitive K+ channel signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891833|gb|ABX04913.1| osmosensitive K+ channel signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 895

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 60/232 (25%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
           A+     + +  +   L S + HD+ +P+ AI  +   L +      +    +LI+  + 
Sbjct: 653 AQAASVQIETERMRNSLLSSVSHDLRTPLAAISGAASTLLDQTNQLDQHIQHELIQTIAD 712

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTG 106
                 + +      T      + +    Q            +          +++    
Sbjct: 713 EGQRLNRLLSNLLDMTRLEAGAVQVHKEWQALEEVLGTALARLAPQIDQRSISIELPNQA 772

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                S    ++L+NL   +    P    + I   +        +  +G         T 
Sbjct: 773 FVPFDSILIEQVLVNLLENSLKYSPSSSPIEIRAVERIGLIEVQIADHGPGIPPSALETI 832

Query: 167 IVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      S      +       +   +   +  E       + +  L 
Sbjct: 833 FEKFFRVQAKRSASSGVGLGLTICRGIIEAHGGTIWAENRPAGGAIFAFTLP 884


>gi|218437440|ref|YP_002375769.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170168|gb|ACK68901.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 703

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 61/241 (25%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSS 57
           +        ++++  L S I HD+ + +  I    +LL            ++ ++I +++
Sbjct: 324 ETERLQSQRLEIIGSLASGISHDLNNILTPILGMAQLLPRKLPHADEQIQQMFKIIEINA 383

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
                 L+ +             I +  +   I           ++              
Sbjct: 384 QRGASLLRQILTFSRGFTPKQDPILVDSLLSDITHLAQETFPKSITIDNFIPPNLWAIRG 443

Query: 114 ---ERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKING 155
              +  ++L+NL +    ++P                      +        + ++   G
Sbjct: 444 DTTQIHQVLMNLCLNGRDAMPDGGNLTLTAQNMVIDECYTSMETNAQPGLYVVITVSDTG 503

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I +    S        +    V+ +   +   +               L
Sbjct: 504 VGI-PEPIKKRIFEPFFSSKELGKGTGLGLSIVMNIVKNHGGFIKVLSEPGKGSQFQVFL 562

Query: 214 E 214
            
Sbjct: 563 P 563


>gi|114570768|ref|YP_757448.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341230|gb|ABI66510.1| PAS/PAC sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 1070

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 62/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+    + S     +   + + H+I +P+  +    ++L    + ++  + +     S 
Sbjct: 677 LARERAESASYAK--SQFLANMSHEIRTPLNGVLGMTQVLHMTELTEQQSRHVETIRSSG 734

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                              +  +         + +++      +  E  +A+D  +    
Sbjct: 735 QALADLIDDILDISKIESGMIELEQRAFEMPELVAMVSDITRLRAQEKQLALDMSLAPDV 794

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
               +   +   +IL+N+   A      G         +++   F +   G         
Sbjct: 795 AKVVVGDEKRLRQILINIVGNAVKFTDSGRVSIDIRAGAEDVVEFRISDTGPGIEPDHLA 854

Query: 163 -KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +       L       +  E +          L 
Sbjct: 855 SIFDRFAQADNSITRQYGGTGLGLAICHELVTLMGGEIGVESVPGEGSTFWFKLP 909


>gi|295084125|emb|CBK65648.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 513

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 276 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 333

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  F        ++ +   + +        K +    
Sbjct: 334 NSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPISEIEIKSLLPDE 393

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                       +++ N    A                  + +     ++  G+      
Sbjct: 394 DVYINTDITRLKQVICNFINNARKFTQKGYIHFGHTLDNRNADSVQIFVEDTGSGIPQEC 453

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      ++      +       +    +  +  +         +  L 
Sbjct: 454 LNEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 506


>gi|253572402|ref|ZP_04849805.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838177|gb|EES66265.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 869

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEIGQFIATINK 692

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +         +  +   + +  R+  +
Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLLRMPDN 752

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF-- 160
                +  +    +++ NL   A      G       +D         ++  G       
Sbjct: 753 EKKYLVTDNVRLQQVVNNLINNAAKFTTYGSITFGYEEDEDPEYTRIFVEDTGVGISEEG 812

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +    +  +            +  + 
Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRIP 865


>gi|229083005|ref|ZP_04215420.1| hypothetical protein bcere0023_55880 [Bacillus cereus Rock4-2]
 gi|228700306|gb|EEL52877.1| hypothetical protein bcere0023_55880 [Bacillus cereus Rock4-2]
          Length = 675

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 72/222 (32%), Gaps = 13/222 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +  +   +       +A  +  ++  +            L
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTFLLNL 665


>gi|119486866|ref|ZP_01620841.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119456159|gb|EAW37292.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 372

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 23/236 (9%)

Query: 1   MAKNI-CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           M KN+    LS  +  + L S   HD+ +P+ AI  S +LL+    +    + I+     
Sbjct: 129 MQKNLENVQLSKEE-KSRLLSIASHDLRTPLSAIQMSSDLLENYDQKLTSEKKIKHFQRI 187

Query: 60  AIIRLKFMRLAFGYTGS------------------VDSLIGLGDIEQVIEDFIAVDKRVQ 101
                   +L                               +   + +  D   ++    
Sbjct: 188 KSAIKNMNQLLEDVLMLSLTESGKMVFKPTPLILKQYCSNLIDSFQVLFTDKHTLEFNCN 247

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            ++  + +   +    IL NL   A    P GG +   +     + +F ++  G      
Sbjct: 248 CNYERKLMLDEKLLNHILGNLLSNAIKYSPEGGTIHFDLIQESQKVVFRVRDEGIGLPPE 307

Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F           I    +    V      +   +  E         +  + 
Sbjct: 308 YKAKLFQSFERAANVGEIKGTGLGLSIVKQAVDLHGGEISVESEVGKGTTFTVTIP 363


>gi|29346941|ref|NP_810444.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298386399|ref|ZP_06995955.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|29338839|gb|AAO76638.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|298260776|gb|EFI03644.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 869

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 633 MREARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEIGQFIATINK 692

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                +   +   +         +  +   + +  R+  +
Sbjct: 693 NCGLLLALINDILDLSRIESGTMEFMFANHNLPLLLKTVHDSQQLNMPPRVELLLRMPDN 752

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF-- 160
                +  +    +++ NL   A      G       +D         ++  G       
Sbjct: 753 EKKYLVTDNVRLQQVVNNLINNAAKFTTYGSITFGYEEDEDPEYTRIFVEDTGVGISEEG 812

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +    +  +            +  + 
Sbjct: 813 IRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLRGTIFVTSEVGRGTRFTVRIP 865


>gi|257865289|ref|ZP_05644942.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257871617|ref|ZP_05651270.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257874889|ref|ZP_05654542.1| histidine kinase [Enterococcus casseliflavus EC20]
 gi|257799223|gb|EEV28275.1| histidine kinase [Enterococcus casseliflavus EC30]
 gi|257805781|gb|EEV34603.1| histidine kinase [Enterococcus casseliflavus EC10]
 gi|257809055|gb|EEV37875.1| histidine kinase [Enterococcus casseliflavus EC20]
          Length = 613

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 70/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   +D           +             L   R
Sbjct: 383 FVSNVSHELRTPLTSMRSYIEALSEGAWKDPEIAPNFLKVTLDETDRMIRMINDLLSLSR 442

Query: 69  LAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
           +  G +      I   ++         ++    +    ++  +T  ++ +  +     ++
Sbjct: 443 MDSGNSQLQLEYINFNEMVNFVLDRFDMMVTNESKKYLIRREFTKRELWVEVDTDKMIQV 502

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T+ + ++ N  + S+   G      +    F +    +    
Sbjct: 503 IDNIMNNAIKYSPDGGIITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARA 562

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  ++       +L 
Sbjct: 563 RQQGGTGLGLAISREVIKAHGGAIWAESRENRGSTFYIMLP 603


>gi|229089450|ref|ZP_04220721.1| hypothetical protein bcere0021_2980 [Bacillus cereus Rock3-42]
 gi|228693927|gb|EEL47619.1| hypothetical protein bcere0021_2980 [Bacillus cereus Rock3-42]
          Length = 271

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 70/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS++DL+  + + I H+I +P+  I   L+LL E    ++           +  
Sbjct: 45  EQELKRLSNIDLIGQMAAGISHEIRNPMTTIRGFLQLLKEENNYEKHNNYFNLMVEELDR 104

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +     +   
Sbjct: 105 ANSIITEFLSIGNTKKSDLQMLDLNSIIHDIIPLIKIDTHNQNKYIQVDTNDVPALLLNR 164

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 165 NEIRQLLMNLYRNGLEAMGTGKTLTISTYKEGQNCVVLAVRDEGKGI-SPEVLEKLGTPF 223

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 224 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 260


>gi|167461323|ref|ZP_02326412.1| Sensory box histidine kinase YycG [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381341|ref|ZP_08055344.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321154917|gb|EFX47188.1| two-component sensor histidine kinase YycF-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 608

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 66/231 (28%), Gaps = 26/231 (11%)

Query: 10  SSMDL---VALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
               L        + + H++ +P+  I + LE L     ++  + +  + + R  +   I
Sbjct: 369 EQEKLERSRKEFVANVSHELRTPLTTIKSYLEALGDGAIEDPQLSERFLGVTRNETERMI 428

Query: 62  IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                 T   D L  + D   V      +   V V      I 
Sbjct: 429 RLVTDLLHLSRLDSNQATLVKTPTNISDMLEEVADRFAVQSRQRKIRIDVSVDARVGSIS 488

Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE---KFT 165
           + R+   ++L NL   A       G V I      +     S++  G      +    F 
Sbjct: 489 IDRDKIDQVLDNLLSNAIKYTADEGIVRIQANRLDHDWVEISVEDTGIGIPKKDLSRIFE 548

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +    +       +   +   +  E   +    +S  L 
Sbjct: 549 RFYRVDKARSRNMGGTGLGLSIAREIVKAHGGSIQLESEYNVGTRVSFTLP 599


>gi|150401859|ref|YP_001325625.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
 gi|150014562|gb|ABR57013.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus aeolicus Nankai-3]
          Length = 640

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
           N    L      + + S + H++ +P+ +I   +EL+ +         +   +++   + 
Sbjct: 408 NELKKLDKFK--SEIISIVSHELRTPLTSIKGYVELVLDGTMGTINESQKRCLEIANENI 465

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIA--VDKRVQVSWTGE 107
                 +  M                 V+    + ++   ++        K +       
Sbjct: 466 DRLKRLIDNMLDLSKIERGELKMDISKVNLNDIVQNVVHSLKPLADGKNIKIINKVEPIT 525

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 +   +L NL   A    P    VTI      N    ++K NG      E     
Sbjct: 526 ANLDKDKITGVLTNLIENAIKFSPVNENVTIEAFKENNMVHITVKDNGPGIPKSELTKIF 585

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +       +   +  ++  E           LL 
Sbjct: 586 DIFYQVNSSAKRIKSGSGLGLAICKSIVESHGGKIWVESKFGKESTFHILLP 637


>gi|320449472|ref|YP_004201568.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
 gi|320149641|gb|ADW21019.1| signal transduction histidine-protein kinase BaeS [Thermus
           scotoductus SA-01]
          Length = 373

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 64/215 (29%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMRLAFG---- 72
           L   + H++ +P+ A+    E L +  +E E   + I+    +    ++ + L       
Sbjct: 150 LIGTVAHELRTPLSALQAYAEALADGVMEPEKAAERIQQEVRAMSRLVRDLSLVSQVESG 209

Query: 73  ----YTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKILLNLFM 124
               + G +D    L    +             +    S+       +    ++L NL  
Sbjct: 210 AVELHPGPLDPKELLEQAAERFRPAFQAKGVALEVAAPSFLPRVWADAERTLQVLANLLS 269

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179
            A    P GG+V +  + +    +FS++  G           F +      +        
Sbjct: 270 NALRHTPEGGRVRLGAERTGQAVVFSVEDTGPGIPEEHLPRIFERFYRIDPSRSRQDGGT 329

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L      R+  E       V    L 
Sbjct: 330 GVGLTIAKSLVEAMGGRIWVESQLGRGSVFRFTLP 364


>gi|297569444|ref|YP_003690788.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925359|gb|ADH86169.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 65/230 (28%), Gaps = 17/230 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
            + +   L  S  L  L  + + + H+I +P+G I ++  +L             L  + 
Sbjct: 252 RRRLEQQLHDSEKLATLGRMVASVSHEIKNPLGIIRSTAAILGKRVKQEAPGNEHLAEII 311

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEK 108
                     +R    +                       +  +         +      
Sbjct: 312 VSETGRLDGIVREFLDFARPQTLHSSPEFINQVIRQAFTFLAPELQRRGIETVLELDEGL 371

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             L+ +R +I   L      A  ++P GG +T+  +  + + +  +   G   +  E+  
Sbjct: 372 PPLAIDREQIYRALLNIMLNAIQAMPGGGTLTLRSRRRRGDQLVEIADTGPGIKEEER-E 430

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I             +    V  +   ++ ++              +  K
Sbjct: 431 RIFSPFHTGRHRGTGLGLAIVKNIIDAHRGKIEVADEPGGGACFQLIFSK 480


>gi|260433701|ref|ZP_05787672.1| histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260417529|gb|EEX10788.1| histidine kinase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 360

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 14/234 (5%), Positives = 56/234 (23%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + + H++ +P+ A+   +E L      +    D  ++++   +      +
Sbjct: 113 QARQMRRDFVANVSHELRTPLTALMGFIETLRGPAKGDPEAHDRFLRIMADEANRMNRLV 172

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRER 115
             +                              +          + ++     ++L  + 
Sbjct: 173 GDLLSLNRVESEERIRPRERVELTELLNATLSSLRPLADGAGVVLSLTVPSSPVELVGDN 232

Query: 116 AKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164
            ++      +   ++              +               +   G          
Sbjct: 233 DQLRQVFTNLVENAIKYGGSGGKVDLIVTESERDAAIRGPAVRVQVIDKGLGIDPVHLPR 292

Query: 165 --TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    +      +    +    V  + + ++ RL  E       V + +L 
Sbjct: 293 LTERFYRADSHRSRELGGTGLGLAIVKHIVNRHRGRLRVESEPGKGAVFTVVLP 346


>gi|163731861|ref|ZP_02139308.1| phosphate regulon sensor protein, putative [Roseobacter litoralis
           Och 149]
 gi|161395315|gb|EDQ19637.1| phosphate regulon sensor protein, putative [Roseobacter litoralis
           Och 149]
          Length = 347

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 17/239 (7%), Positives = 61/239 (25%), Gaps = 33/239 (13%)

Query: 9   LSSMDLVALL----CSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS 59
           +S ++    +     + + H++ +P+ A+   +E L     ++    D  + +++  +  
Sbjct: 103 VSHLEQAGQMRRDFVANVSHELRTPLTALMGFIETLRGPAREDAAARDRFLDIMQGEAGR 162

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKID 110
               +  +       G                      +          +        + 
Sbjct: 163 MNRLVGDLLSLSRVEGDQRVRPRKSVNLSDVVSSVARTLAPLAKDTSVVLDCDLPDHPVG 222

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD----------SKNENIFSLKINGNLARF 160
           L  +  +++  +  +   ++  G      +                   S+   G     
Sbjct: 223 LIGDADQLMQVVTNLVENAIKYGASGGRVIIKLTEVARDLSLRAPGVYISVTDFGPGIDP 282

Query: 161 PEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    +      +    +    V  + + ++ RL  E         + +L 
Sbjct: 283 VHLPRLTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIESELGQGATFTVVLP 341


>gi|83814196|ref|YP_446585.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83755590|gb|ABC43703.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 441

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 65/241 (26%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIR 54
           MA N+   +  +     +     + + HD+ SPI +I   LE   + +  +  +  Q   
Sbjct: 192 MADNLQETMEELRQADRMRRELVANVSHDLRSPIASIQGYLETVHMKDGDLPPQERQRYV 251

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-------------EQVIEDFIAVDKRVQ 101
            +++    RL  +         +++      I              Q           ++
Sbjct: 252 KTALRNTKRLNTLVNELFELSKLETKQVEPTIEAFPIAELVQDVVMQYEPRAEEQAVDLR 311

Query: 102 VSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                    +  +   +   L      A    P GG+V + + + + E   ++   G   
Sbjct: 312 ADLPERHARVEADIGLVERALSNLIDNAIHYTPEGGQVRVRLDNEQGEVCVAVADTGPGI 371

Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    F +    +           +       +   +   L  E            L
Sbjct: 372 PEDDLPHIFERFYRVDKSRDRDRGGAGLGLAIAKTILELHGRTLEVESTVGEGTSFRFCL 431

Query: 214 E 214
            
Sbjct: 432 P 432


>gi|71908921|ref|YP_286508.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71848542|gb|AAZ48038.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 845

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 49/234 (20%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H++ +P+  I    ELL          +   +   S  
Sbjct: 609 AREKAEEASRQKSAFL--ATMSHELRTPLNGILGFAELLKYELDNPSHQEYATVIQQSGE 666

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
                                           + +     +          D  V     
Sbjct: 667 HLLNLVNEILDLAKIEAGEMLFKRVPTPLAGLVSECVAGHQVTATAKGLGFDLNVAEGLP 726

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            + +       +IL NL   A     +G            E  F++   G          
Sbjct: 727 EQLVTDPLRLRQILNNLLSNAVKFTEQGKISLTVRPA-GQEIAFAVSDTGAGIPPESLDM 785

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +        +    V  LA     R+  E         +  L 
Sbjct: 786 VFEKFKQLESFLTREHGGTGLGLSLVRQLAEHMGGRVTLESAVGVGSTFTVYLP 839


>gi|294812875|ref|ZP_06771518.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
 gi|294325474|gb|EFG07117.1| Sensor protein [Streptomyces clavuligerus ATCC 27064]
          Length = 738

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 21/229 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSM 58
               L +      + S + H++ +P+  I   LE   +   E +       ++       
Sbjct: 492 HRARLEAQRRA--MVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAAFVDSLLEEAVQLQH 549

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSR 113
                        G        +   ++   +              ++V        LS 
Sbjct: 550 IIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSA 609

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +  ++   +      A    PRGG VT+            +   G      +    F + 
Sbjct: 610 DPVRLRQAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRF 669

Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         +    V  L   +   +  E       V + LL 
Sbjct: 670 WRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTLLLP 718


>gi|229197363|ref|ZP_04324090.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293]
 gi|228585987|gb|EEK44078.1| hypothetical protein bcere0001_29080 [Bacillus cereus m1293]
          Length = 448

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 448


>gi|326441348|ref|ZP_08216082.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 694

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 21/229 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSM 58
               L +      + S + H++ +P+  I   LE   +   E +       ++       
Sbjct: 448 HRARLEAQRRA--MVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAAFVDSLLEEAVQLQH 505

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSR 113
                        G        +   ++   +              ++V        LS 
Sbjct: 506 IIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSA 565

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +  ++   +      A    PRGG VT+            +   G      +    F + 
Sbjct: 566 DPVRLRQAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRF 625

Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         +    V  L   +   +  E       V + LL 
Sbjct: 626 WRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTLLLP 674


>gi|254389790|ref|ZP_05005014.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces clavuligerus ATCC 27064]
 gi|197703501|gb|EDY49313.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces clavuligerus ATCC 27064]
          Length = 478

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 57/229 (24%), Gaps = 21/229 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSM 58
               L +      + S + H++ +P+  I   LE   +   E +       ++       
Sbjct: 232 HRARLEAQRRA--MVSDVAHELRTPLSNIRGWLEGAQDGVAEPDAAFVDSLLEEAVQLQH 289

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSR 113
                        G        +   ++   +              ++V        LS 
Sbjct: 290 IIDDLRDLAEADAGALRLRPVPVRPAELLGQVASAHQARADEAGTDLRVEVPHPVPVLSA 349

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +  ++   +      A    PRGG VT+            +   G      +    F + 
Sbjct: 350 DPVRLRQAVGNLLSNAVRHTPRGGSVTLRAAVRGERLAIEVADTGQGIAAEDLPYVFDRF 409

Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         +    V  L   +   +  E       V + LL 
Sbjct: 410 WRAEKSRSRRTGGSGLGLAIVRKLTEAHGGAVTVESEPGRGSVFTLLLP 458


>gi|81325113|sp|Q9RDT3|WALK_STAAU RecName: Full=Sensor protein kinase walK
 gi|6689207|emb|CAB65401.1| VicK protein [Staphylococcus aureus]
          Length = 415

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 186 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 245

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 246 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 305

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 306 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 365

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 366 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 404


>gi|92114208|ref|YP_574136.1| periplasmic sensor signal transduction histidine kinase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797298|gb|ABE59437.1| periplasmic sensor signal transduction histidine kinase
           [Chromohalobacter salexigens DSM 3043]
          Length = 699

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 57/240 (23%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     ++   L AL  L + I H+I +P   I   +EL+ +          + +  I
Sbjct: 430 LKQARASLMTQEKLAALGELTAGIAHEINNPAAVILGHVELIADTLGPDVAPVRDEVDTI 489

Query: 54  RLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                     +  +               + D      D E ++   +       VS   
Sbjct: 490 IAQVERIRALIDNLLQYSRAGGGQEPAFRAEDINAIAADTEVLVRHALDKHGHRLVSALH 549

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI------------FSLKIN 154
               +   R ++   L  +   +             +++                 +   
Sbjct: 550 ATRPVECHRGQLQQVLINLLLNAAQASTAPVTIHLVTRDSVREVPGRGDLDGVEIRVADP 609

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G          +I D    +      +       +   +   +          +    L 
Sbjct: 610 GPGM-SKAVRQRIFDPFFTTREAGSGLGLAISAGIVRRSGGDIGVASRPGRGTIFHVWLP 668


>gi|314934942|ref|ZP_07842301.1| sensory box histidine kinase VicK [Staphylococcus caprae C87]
 gi|313652872|gb|EFS16635.1| sensory box histidine kinase VicK [Staphylococcus caprae C87]
          Length = 610

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 67/219 (30%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+E   +      + + + R  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEEGAWQDESLAPQFLSVTREETERMIRLVNDLLQLSK 440

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                D +        +  + I     +    T    ++ ++            ++  N+
Sbjct: 441 MDNESDQITKEIVDFNMYINKIINRHEMAAKDTTFVREIPQQTIFTEIDPDKMTQVFDNV 500

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 501 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|313622400|gb|EFR92864.1| two-component sensor histidine kinase [Listeria innocua FSL J1-023]
          Length = 591

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 70/228 (30%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +P+ A+    E L +  + DE++      +I+  S      +  
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422

Query: 67  M-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +              +       V         E   E  I V    + +          
Sbjct: 423 ILALSRIEQNPVTENIEPVDVDEVIEQSSRTIFEMATEKNIQVSVPEKTNPPIIIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + + + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLINQEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      ++  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGQIEVESQEEVGSTFRVTLPK 589


>gi|325680003|ref|ZP_08159572.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324108441|gb|EGC02688.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 455

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + +N       +     L     S + H+  +P+ +I    +LL +  +           
Sbjct: 214 LQRNFNKMAQELSGIETLRGDFISNVSHEFKTPLASIQGFAKLLQDPLLSSADRAEYTQI 273

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
            +    RL  +         +++   +G  ++   D       + +     K D+  +  
Sbjct: 274 IIDETSRLSKLSSNILSLTKLENQTTIGKKKRFRIDEQIRKIILMLEPEWSKKDIDMDID 333

Query: 115 ------------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                         +I  N+   A    P+ G + +++    N  +  +  NG       
Sbjct: 334 LEDIIYVGNEDLMGQIWQNIINNAIKFTPQNGIIKVNLFRGGNGIVTKIWDNGPQIPADK 393

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + F +   G+     + + +    V  +      ++  +   +  VV +  L 
Sbjct: 394 KDKIFEKFYQGDRSRATEGNGLGLALVKRIVDLADGKISVDNPFEGGVVFTVELP 448


>gi|253564117|ref|ZP_04841574.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947893|gb|EES88175.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301161586|emb|CBW21126.1| putative two-component histidine sensor kinase [Bacteroides
           fragilis 638R]
          Length = 411

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 61/229 (26%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                +S+  L +   + + H+I +P+ AI     LL     + E    + + + +    
Sbjct: 181 EKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLASADDDTEKKMYLDIVAENNDRL 240

Query: 64  LKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGE 107
           L+ +                +    D    L  +  ++   +     +++     +    
Sbjct: 241 LQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGILNIRLKDKPEIKLNCEAGTDEWI 300

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +I+ NL   A      G          ++E  F +   G      E   +I
Sbjct: 301 IYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGE-QDKI 359

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D     +  +    +       +       +  E            L 
Sbjct: 360 FDRFTKLDHEVPGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLP 408


>gi|223043418|ref|ZP_03613464.1| sensor protein YycG [Staphylococcus capitis SK14]
 gi|222443207|gb|EEE49306.1| sensor protein YycG [Staphylococcus capitis SK14]
          Length = 610

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 67/219 (30%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+E   +      + + + R  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEEGAWQDESLAPQFLSVTREETERMIRLVNDLLQLSK 440

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                D +        +  + I     +    T    ++ ++            ++  N+
Sbjct: 441 MDNESDQITKEIVDFNMYINKIINRHEMAAKDTTFVREIPQQTIFTEIDPDKMTQVFDNV 500

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 501 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|89896745|ref|YP_520232.1| hypothetical protein DSY3999 [Desulfitobacterium hafniense Y51]
 gi|89336193|dbj|BAE85788.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 463

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+N+        L     + I H++ +P+ +I + +E   +       E + +I     
Sbjct: 225 MAENLK---KQERLRKQFTADIAHELRTPLTSIRSYIEAFQDGVLPANKENLAIINEEIE 281

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                           +  +R           +    ++   +     +        +  
Sbjct: 282 RLTRLSSDLKDLNVAEMGALRPYLTQVNLSALIDKTVNMLSPLIQEKGISLAWHKPESTL 341

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    ++  NL   A+      GK+ + ++    E + ++  +G      +    F
Sbjct: 342 IEGDEYLLTRLFYNLLHNAYKFTESPGKIEVQMELRHQEALITISDSGIGIPEEDLPFIF 401

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +         I       +A  ++  L  E   D       LL 
Sbjct: 402 ERFYRSEKSRSRETGGTGIGLALAQQIALLHQGTLTVESCPDKGSRFMLLLP 453


>gi|186683734|ref|YP_001866930.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466186|gb|ACC81987.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1039

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53
           + +       +     +     + + H++ +P+ AI    +LL     +       ++ I
Sbjct: 646 LEREKAARADAESANRMKDEFLATLSHELRTPLNAILGWTQLLRNRKFDEATTARALETI 705

Query: 54  RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             ++ S    ++            + L+      V  +    D  +   +   ++ + + 
Sbjct: 706 ERNTKSLAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVEAAIDTVRPAAEAKEINIKCKF 765

Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--- 158
                 +   +    +++ NL   A     +GG V + ++  ++     +   G      
Sbjct: 766 DPEVGIVVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQLERIESSVQIRVSDTGVGIAAE 825

Query: 159 RFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
             P  F +    +     +     +    V  L   +   +  E             L 
Sbjct: 826 FLPHVFERFRQADSSSTRSHGGLGLGLAIVRHLVELHGGTVSVESLGVGQGATFIVNLP 884


>gi|301064751|ref|ZP_07205131.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300441126|gb|EFK05511.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 575

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 14/224 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M + +     +  L A+  L S + H+I +P+ AI  + + L E  ++     +      
Sbjct: 350 MEQRLQ---QAERLSAMGRLASGVAHEIRNPLNAISMACQRLKEENLQQLSGVIRNEIGR 406

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDL 111
             +I  +F+ L+      ++       ++QV        +   +                
Sbjct: 407 LNMIVEEFLGLSKERRLKLEKTDLAELVQQVGLLMKEEARARGIEIRTTGIETKLMMRLD 466

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDG 170
                + L+N+   A  ++   G VTI +     +  + +L   G      +   +I + 
Sbjct: 467 GNRIKQALINMVKNAMDAIVASGTVTIGIHRKGKDMAVVTLSDTGTGLSEQDL-DKIFNL 525

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +      +       +   +   +  +           +L 
Sbjct: 526 DFTTKEQGLGLGLALSHEIIKAHGGEIRVQSTPGVGTTFLIMLP 569


>gi|228960940|ref|ZP_04122573.1| hypothetical protein bthur0005_43950 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798836|gb|EEM45816.1| hypothetical protein bthur0005_43950 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVAVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|260642003|ref|ZP_05414261.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623855|gb|EEX46726.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 862

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 58/235 (24%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +     L +  L +   + + H+I +P+ AI    +LL +          + +  I  
Sbjct: 626 MREARDKALQTDKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTTEEVAQFIATINK 685

Query: 56  SSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +    +  +             M   F        L  + D +++               
Sbjct: 686 NCGLLLALINDILDLSRIESGTMEFIFAEHNLPLLLKTVHDSQRLNMPPGVELLLRMPEG 745

Query: 105 TGEK-IDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF-- 160
             +     +    +++ NL   A      G        ++        ++  G       
Sbjct: 746 DKKYLQTDNVRLQQVVNNLINNAAKFTFSGSITFGYEEEEEPGYTRIFVEDTGVGISEEG 805

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +      +       +    K  +            +  L 
Sbjct: 806 IRHIFERFYKVDNFTQ--GAGLGLSICQTIVERLKGTISVTSEVGKGTRFTVRLP 858


>gi|332885680|gb|EGK05926.1| hypothetical protein HMPREF9456_02190 [Dysgonomonas mossii DSM
           22836]
          Length = 916

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/229 (9%), Positives = 59/229 (25%), Gaps = 20/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK     L  +    L  S + H+I +P+ AI     ++ E   +++          ++ 
Sbjct: 550 AKLKAEQLDKLKSAFL--SNMSHEIRTPLNAILGFSRIIAETDDQEKRNYYFNFVESNSG 607

Query: 62  IRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L  +     ++                    + + +                +     
Sbjct: 608 RLLGLVNEILDFSKIESGIVEFEPEDFDFGMLCLEIYETYASQCHPETELIYNNIGAELW 667

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L NL + A     + G +    +   N     +  +G      ++  +I
Sbjct: 668 IRSDRNRIHQVLSNLIINAQKFTKK-GYIKYGFEVIDNNVKVYVNDSGIGI-VEDQLDKI 725

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  ++   +     +       +       +            +  L 
Sbjct: 726 FERFMQVDSNAIGTGLGLAICRSIVERLGGEISVTSELQKGSCFTFTLP 774


>gi|296128219|ref|YP_003635469.1| response regulator receiver sensor signal transduction histidine
           kinase [Cellulomonas flavigena DSM 20109]
 gi|296020034|gb|ADG73270.1| response regulator receiver sensor signal transduction histidine
           kinase [Cellulomonas flavigena DSM 20109]
          Length = 332

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA  +     +  L A L + + H++ +P+  I   LE +++    +++  M ++R  S 
Sbjct: 98  MAARLQ---EAERLRARLLADVAHEVRTPVATIAGYLEAVEDGLQPMDEPTMAVLRDQSA 154

Query: 59  SAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-G 106
                 + +                     + L       +       VD RVQV    G
Sbjct: 155 RLTRLARDLAAVTRAEAGDLVLTLEPLAPDELLAATTGTWRERATAAGVDVRVQVDPELG 214

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
                 +   ++L NL   A    P GG +T+            +   G        P  
Sbjct: 215 HVRVDRQRMGQVLDNLVANALRHTPAGGTITLRATGGYQRVALHVSDTGAGIAPEHLPHL 274

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
           F +    +           I       L   +   +             +  L 
Sbjct: 275 FERFYRADTARDRTHGGSGIGLAICKALTEAHGGTITATSDGPGAGASFTVTLP 328


>gi|209693816|ref|YP_002261744.1| osmolarity sensor protein [Aliivibrio salmonicida LFI1238]
 gi|208007767|emb|CAQ77888.1| sensor outer membrane protein EnvZ [Aliivibrio salmonicida LFI1238]
          Length = 435

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 70/218 (32%), Gaps = 7/218 (3%)

Query: 4   NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60
            +   +  ++   ALL + + HDI +P+  I  + E++   +  + + +++     +   
Sbjct: 215 QMAKGIQQLEQDRALLMAGVSHDIRTPLTRIRLATEMMSPQDDYLAESMIKDTEECNEII 274

Query: 61  IIRLKFMRLA-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
              + +++         VD    + ++      +    K    +        +    +++
Sbjct: 275 GQFMDYLKPVAKQDFIDVDINTIVNEVILAEGGYEREIKTNLANIPQSVHGNAIAIKRVI 334

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176
            NL + A         V+  V          ++ NG      +    F     G+     
Sbjct: 335 TNLVVNAIRYGGDWIAVSTRVSADHKTAWIIIEDNGPGIDEAQLESVFEPFTRGDTARGS 394

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +    V  +  +++  +      +  + +   L 
Sbjct: 395 EGTGLGLAIVKRIVGQHQGEVSLANRREGGLKVQVKLP 432


>gi|184154492|ref|YP_001842832.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
 gi|183225836|dbj|BAG26352.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
          Length = 619

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 65/226 (28%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIRLKFMRLAF 71
             S + H++ +P+ ++ + +E L +  I D  +           +     +    + L+ 
Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAINDPELASRFLGVVSDETERMIRMINDLLSLSR 439

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------TGEKIDLSR 113
             +G+    +   +I ++    +     +  +                          + 
Sbjct: 440 MDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYFTKKDLWVEIDTD 499

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +++ N+   A    P GG +T  + ++ N  I S+   G      +           
Sbjct: 500 KFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKDLGHIFDRFFRV 559

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + ++         L 
Sbjct: 560 DKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|317052769|ref|YP_004113885.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947853|gb|ADU67329.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 388

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 63/226 (27%), Gaps = 18/226 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61
                 +  L A+  + + I H+I +P+G+I     LL  ++  + +  QL         
Sbjct: 160 EQQAARNEKLAAMGEMAANIAHEIRNPLGSIELFASLLFRDLADDSKKQQLAANIVSGVR 219

Query: 62  IRLKFMRL-------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                +                F  T  +D ++   +  +  ++   + +          
Sbjct: 220 NLNSVISNLLLFTRNLSIQKETFDATALLDEVLKFSEHLKYKKNIRTIREVASGVELHGD 279

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            DL  +    L+   + A               DS       ++ +G      E   +I 
Sbjct: 280 FDLLNQVLLNLVQNAVNAIEESGTIALTVERDTDSDACV-LRVEDDGKGM-DQETLRKIF 337

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +    V  +   +   L  E  +      +  L 
Sbjct: 338 IPFYTTRARGTGLGLSIVNRIVEAHGGVLNVESQEGLGTTFTIKLP 383


>gi|229015716|ref|ZP_04172698.1| hypothetical protein bcere0030_3040 [Bacillus cereus AH1273]
 gi|229021913|ref|ZP_04178477.1| hypothetical protein bcere0029_2810 [Bacillus cereus AH1272]
 gi|228739385|gb|EEL89817.1| hypothetical protein bcere0029_2810 [Bacillus cereus AH1272]
 gi|228745573|gb|EEL95593.1| hypothetical protein bcere0030_3040 [Bacillus cereus AH1273]
          Length = 672

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E  I ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEESIYEKHNKYFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +     + ++         +V  +   E +   
Sbjct: 506 SNSIITEFLSIGNTRKSDLQMFDLNSIIHDSIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|251800212|ref|YP_003014943.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247547838|gb|ACT04857.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 614

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 59/232 (25%), Gaps = 28/232 (12%)

Query: 10  SSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRLSS 57
               L        + + H++ +P+  I +  E L++  +++  +                
Sbjct: 375 EQEKLEQSRRQFVANVSHELRTPLTTIKSYAEALNDGALDERELSERFVGVIRNETERMI 434

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKI 109
                 L   RL             + ++   + D  +            +         
Sbjct: 435 RLVTDLLHLSRLDSNQAPLRRRKTNIHEMLDEVTDRFSFQLRQKSILATIIVDRDLKSAW 494

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168
               +  ++L NL   A      GG + +S           S+K  G      +   +I 
Sbjct: 495 LDRDQIDQVLDNLISNAIKYTLEGGAIELSAHKQDAATIAISVKDTGIGIPKKDLS-RIF 553

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D            +    +       +   +   +  +   +    ++  L 
Sbjct: 554 DRFYRVDKARSRNMGGTGLGLSIAREIVKAHGGTISLKSELNDGTTVTFTLP 605


>gi|227514134|ref|ZP_03944183.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|227087505|gb|EEI22817.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
          Length = 619

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 65/226 (28%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAF 71
             S + H++ +P+ ++ + +E L +  I D  +       +   +     +    + L+ 
Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAINDPELAPRFLGVVSDETERMIRMINDLLSLSR 439

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------TGEKIDLSR 113
              G+    +   +I ++    +     +  +                          + 
Sbjct: 440 MDAGTAKLNLEYVNINELFNHILNRFDMIIKNEAADPSQKKYTIVRYFTKKDLWVEIDTD 499

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +++ N+   A    P GG +T  + ++ N  I S+   G      +           
Sbjct: 500 KFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKDLGHIFDRFFRV 559

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + ++         L 
Sbjct: 560 DKDRSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|196040379|ref|ZP_03107680.1| sporulation kinase B [Bacillus cereus NVH0597-99]
 gi|196028864|gb|EDX67470.1| sporulation kinase B [Bacillus cereus NVH0597-99]
          Length = 389

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 159 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 218

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 219 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 278

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + I    S N+ I  ++ +G      E+  +  +   
Sbjct: 279 QHFQQCFLNLIKNGIEAMPNGGTLNIFSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 337

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 338 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 380


>gi|157151584|ref|YP_001450079.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|262282636|ref|ZP_06060404.1| histidine kinase [Streptococcus sp. 2_1_36FAA]
 gi|157076378|gb|ABV11061.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|262261927|gb|EEY80625.1| histidine kinase [Streptococcus sp. 2_1_36FAA]
          Length = 453

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 71/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPEFVKVSLTETNRMMRMVSDLLSLSR 270

Query: 69  LAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNDSSHLDVELTNFTAFITFILNRFDKIKSQDETKKYEIVRDYPITPIWVEIDTDKMTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GGK+T+ ++ ++++ I S+   G      +    F +    +   
Sbjct: 331 VIDNIMNNAIKYSPDGGKITVGMKTTEDQLIISISDEGLGIPKKDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  ++   +  +   +     + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHHGFIWAKSEYEVGSTFTIVLP 432


>gi|317154504|ref|YP_004122552.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944755|gb|ADU63806.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 648

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 75/231 (32%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
           +++  +L+    L A+  L + + H++ +P+ ++    +L    L +    D+    +  
Sbjct: 383 RSLEEDLNEAKRLAAIGSLAAGVAHEVRNPLSSLRGFAQLFASKLKDQPPLDQYAATMVQ 442

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTGEKIDLS 112
            +      +  +               L ++    + +  F   +K+++  +   +  + 
Sbjct: 443 EADRLNRVVTDLLYLAKPRRLDPVETDLAEVGESLRQLMRFDFKNKQIEPVFDFAQPTVY 502

Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEK 163
            ++    ++LLNL   +  ++    +              +      +  +G     P+ 
Sbjct: 503 ADQDALRQVLLNLISNSLDAIVACEECHKPGHVCLTSERVEGGVCIVVADDGPGM-DPDM 561

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V        +    V  +   ++ + + +   D  V +     
Sbjct: 562 SDDVFKPFVTGKKTGTGLGLAIVQNIMRAHRGKAVLDSRPDEGVRVRLFFP 612


>gi|326202665|ref|ZP_08192533.1| LOW QUALITY PROTEIN: integral membrane sensor signal transduction
           histidine kinase [Clostridium papyrosolvens DSM 2782]
 gi|325987249|gb|EGD48077.1| LOW QUALITY PROTEIN: integral membrane sensor signal transduction
           histidine kinase [Clostridium papyrosolvens DSM 2782]
          Length = 362

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 68/214 (31%), Gaps = 17/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H++ +P+ AI    E+L +  ++ +  +       +   RL  +         +
Sbjct: 144 FMSNVSHEVKTPVAAITGFSEILMDGKLDKQEQEEYLQLINNESRRLSVLCENMLQMSRL 203

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--------------AKILLNLF 123
           D    +    +V  D       + ++    ++D+S +                ++  NL 
Sbjct: 204 DYQEIVAKKNKVRIDEQIRKCIILLTQKWYEMDISFDLEMDAVTVESDASLLMQLWTNLI 263

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHD 180
             A         + I V+    + +  ++ +G        P+ + +    +       + 
Sbjct: 264 DNAIKYSDMKPYIKIRVKKEDGQLLVRIEDDGIGIPKEKLPKIYDKFYQCDESHKKHGNG 323

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V  +       +  E  +D   V+   + 
Sbjct: 324 LGLSIVKRILELLHGTISYESEEDEGTVVFVTIP 357


>gi|212639747|ref|YP_002316267.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
 gi|212561227|gb|ACJ34282.1| Hybrid signal transduction histidine kinase [Anoxybacillus
           flavithermus WK1]
          Length = 962

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 59/231 (25%), Gaps = 19/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++I        + +   S + H++ +P+ ++    EL+     +   + + +  I   + 
Sbjct: 577 RDITKQFEVDQMKSEFVSTVSHELRTPLSSVLGFTELMLTKELKPERQKKYLTTIYQEAK 636

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
                +              +     +    I + +   ++V        +         
Sbjct: 637 RLTALINDFLDVQRMESGKQTYDKKYEDIVSIIENVIETQKVNTKIHQFHVQKETNNTTV 696

Query: 117 --------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++  NL   A    P GG +T+ + +        ++  G             
Sbjct: 697 LGDRDKLAQVFTNLISNAIKYSPEGGNITVRIYERGTRLCVDVQDEGLGIPEEAIPNLFT 756

Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       I    +    V  +   ++  +            +  L 
Sbjct: 757 KFYRVDNSDRRRIGGTGLGLAIVKEIVKAHEGEVSVTSELKKGSTFTVSLP 807


>gi|196249864|ref|ZP_03148560.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196210740|gb|EDY05503.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 609

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 21/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL-- 69
              + + H++ +P+  + + LE L +   +        +Q+++  +   I  +  +    
Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALADGAWQDKEITPRFIQVVQNETERMIRLVNDLLHLS 438

Query: 70  ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILL 120
                                + +    +     ++      +  +  E       ++L 
Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKIIDRFELTKSDNIRFVRNIPREAIFIEVDEDKITQVLD 498

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           N+   A    P+GG +T  V++  +E I S+   G      +    F +    +      
Sbjct: 499 NIISNAIKYSPQGGTITFRVRELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       L   +   +  E  +     +   L 
Sbjct: 559 LGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFTLP 597


>gi|169342707|ref|ZP_02863748.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
 gi|169299213|gb|EDS81283.1| sensory box histidine kinase [Clostridium perfringens C str.
           JGS1495]
          Length = 571

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 65/222 (29%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
            ++ +   + I H++ +P+ +I    E L    +    ++ + +I   S      L+ + 
Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407

Query: 69  LAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118
             +       +++   +           + +        + +        +    +  ++
Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           LLNL   +     +GGKV +   +     I  ++ NG      +   +I +         
Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNRDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +           +   + 
Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGDINVTSELGVGTKIVITIP 568


>gi|162449626|ref|YP_001611993.1| sensor for high-affinity potassium transport system [Sorangium
           cellulosum 'So ce 56']
 gi|161160208|emb|CAN91513.1| sensor for high-affinity potassium transport system [Sorangium
           cellulosum 'So ce 56']
          Length = 910

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55
           A+       + +L   L S + HD+ +P+  I  +   L + G +   + L         
Sbjct: 658 AQRARLEAQAEELRNALLSSVSHDLRTPLATITGAAGALLDDGNDGAALDLAARRDLTQT 717

Query: 56  ---SSMSAIIRLKFMRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               +      ++ +                   L  +        +     + + +   
Sbjct: 718 VLEEAQRLERLVRNLLDMTRLESGALAVRKEWLPLEEVVGAALNRVEEHLRGREISIELD 777

Query: 106 GEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                +  +     ++L+NL   A    P G  + I      N     +   G      E
Sbjct: 778 RATELVPMDGVLIEQVLINLLENALKYSPAGSPIGIRGFTEGNVATLEINDRGPGIPPGE 837

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                   +       +   +  R+  E            L 
Sbjct: 838 EEAIFEKFYRGRGHTQRGIGLGLTICRGIVTAHGGRVAAENRPHGGAAFRVTLP 891


>gi|138897043|ref|YP_001127496.1| sensory box histidine kinase YycG [Geobacillus thermodenitrificans
           NG80-2]
 gi|134268556|gb|ABO68751.1| Sensory box histidine kinase YycG [Geobacillus thermodenitrificans
           NG80-2]
          Length = 609

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 21/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL-- 69
              + + H++ +P+  + + LE L +   +        +Q+++  +   I  +  +    
Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALADGAWQDKEITPRFIQVVQNETERMIRLVNDLLHLS 438

Query: 70  ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILL 120
                                + +    +     ++      +  +  E       ++L 
Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKIIDRFELTKSDNIRFVRNIPREAIFIEVDEDKITQVLD 498

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           N+   A    P+GG +T  V++  +E I S+   G      +    F +    +      
Sbjct: 499 NIISNAIKYSPQGGTITFRVRELADEIIISISDEGVGIPKADLAKIFERFYRVDKARSRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       L   +   +  E  +     +   L 
Sbjct: 559 LGGTGLGLAIAKELVIAHGGTIWAESKEHKGTTIYFTLP 597


>gi|323692870|ref|ZP_08107095.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503045|gb|EGB18882.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 358

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLI 53
           +  N    +   +L ++        + I H+  +P+ AI   + LL E  + +E   + I
Sbjct: 113 LTDNFNRMVQ--ELGSIESFRNDFVTNISHEFKTPLAAIEGYVTLLQEPSLTEEDRNEYI 170

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVS 103
           R+   S              +      I  G              ++ + +  +K + + 
Sbjct: 171 RIIMDSTKQLSSMAGNILMLSRLEKQEIVTGKTLFKLDEQIRQSLLMLEPLWENKYLDLD 230

Query: 104 WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                +          ++ LNLF  A    P GG ++ S++   +     +   G     
Sbjct: 231 INLPPVRYFGNPDLLMQVWLNLFQNAIKFTPAGGSISASMKLFPDFVEVVISDTGIGM-D 289

Query: 161 PEKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I +    +  +     + +       +   +   +  E   D   + +  L 
Sbjct: 290 EETMRRIFEKFYSAGRELGRSGNGLGLSITKRILELSGGTITVESSPDEGSLFTVTLP 347


>gi|323483867|ref|ZP_08089244.1| sensor histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402821|gb|EGA95142.1| sensor histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 358

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLI 53
           +  N    +   +L ++        + I H+  +P+ AI   + LL E  + +E   + I
Sbjct: 113 LTDNFNRMVQ--ELGSIESFRNDFVTNISHEFKTPLAAIEGYVTLLQEPSLTEEDRNEYI 170

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVS 103
           R+   S              +      I  G              ++ + +  +K + + 
Sbjct: 171 RIIMDSTKQLSSMAGNILMLSRLEKQEIVTGKTLFKLDEQIRQSLLMLEPLWENKYLDLD 230

Query: 104 WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                +          ++ LNLF  A    P GG ++ S++   +     +   G     
Sbjct: 231 INLPPVRYFGNPDLLMQVWLNLFQNAIKFTPAGGSISASMKLFPDFVEVVISDTGIGM-D 289

Query: 161 PEKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I +    +  +     + +       +   +   +  E   D   + +  L 
Sbjct: 290 EETMRRIFEKFYSAGRELGRSGNGLGLSITKRILELSGGTITVESSPDEGSLFTVTLP 347


>gi|314933845|ref|ZP_07841210.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87]
 gi|313653995|gb|EFS17752.1| sensory box histidine kinase PhoR [Staphylococcus caprae C87]
          Length = 565

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    D  + +I   S    
Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +      D  Q       ++ + ++         
Sbjct: 396 SLVMDLLDLSHIEQQTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVIIEAH 455

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168
             + A+++ NL   A        KV + V     +    ++  G           F +  
Sbjct: 456 ENKIAQVITNLLSNAINYSLEDNKVIVRVFREGKKVNLEIQDFGIGISVKDQKHIFERFY 515

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+               
Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVT 561


>gi|228917320|ref|ZP_04080874.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842310|gb|EEM87404.1| hypothetical protein bthur0012_45310 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|228983575|ref|ZP_04143780.1| hypothetical protein bthur0001_2990 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776171|gb|EEM24532.1| hypothetical protein bthur0001_2990 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 672

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  +   L+LL E    ++           +  
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTVRGFLQLLKEENNYEKHNNYFNLMVEELDR 505

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSIGNTKKSDLQMLDVNSIIHDIIPLIKIDTHNQNKYIQVDTNNVPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  GN    PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGNGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGICYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|223043560|ref|ZP_03613605.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           capitis SK14]
 gi|222443048|gb|EEE49148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           capitis SK14]
          Length = 565

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    D  + +I   S    
Sbjct: 336 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIE 395

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +      D  Q       ++ + ++         
Sbjct: 396 SLVMDLLDLSHIEQQTEIETNYMNLSELAYNTIDNLQTQAINKNIEIQPEIEKDVIIEAH 455

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168
             + A+++ NL   A        KV + V     +    ++  G           F +  
Sbjct: 456 ENKIAQVITNLLSNAINYSLEDNKVIVRVFREGKKVNLEIQDFGIGISAKDQKHIFERFY 515

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+               
Sbjct: 516 RVDKARSRDSGGTGLGLSITKHIVEAHNGRININSRLGEGSTFKVT 561


>gi|197121089|ref|YP_002133040.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196170938|gb|ACG71911.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 373

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +A+     L S  L A+  L S + H++ +P+GAI    EL        E    D+++  
Sbjct: 134 LAEARASWLRSEQLAAVGRLASGVAHEVGNPLGAIAGYAELARGRIRAGEAAQADDLVAR 193

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGE 107
           I + +      ++ +      +    + I L                  D R ++    +
Sbjct: 194 IAVEAGRIDAIVRDLLELARPSAPAVAPIALSGPVDAALRLARVQARLKDVRAELDLPAD 253

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +    A++LLNLF+ A  ++   G + ++ ++ ++     +   G      +  
Sbjct: 254 LPPVLADEARLAQVLLNLFLNAGDAMGGRGTLRVTAREVQDRVEIDVADQGPGIGPEDLP 313

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ D    +        +       L       +          V    L +
Sbjct: 314 -RVFDPFFTTKPPGAGTGLGLSVSHRLMEAMGGAISAANAPGGGAVFRLRLRR 365


>gi|251796138|ref|YP_003010869.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543764|gb|ACT00783.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 357

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 68/222 (30%), Gaps = 19/222 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM 67
            +L     S + H+I +P+ +I      L     +     + +++I   S       + +
Sbjct: 130 EELRQEFISDVSHEIQTPLTSISGFARALQNQSIDSDTRMKYLRIIEGESSRLSKLSENL 189

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
                       +      L        +  +     K ++++   + + +  +     +
Sbjct: 190 LRLASLDSEKHPFEPKRYRLDRQLGTLILSCEPQWTGKSIELNADLDDVYVEADEDLLSQ 249

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----V 172
           + +NL   +    P  G++ ++++   N+  F +K NG      +               
Sbjct: 250 VWINLISNSIKFTPEDGQIDVTLRQKGNQVEFRIKDNGIGIAADQHELIFDRFFKSDKAR 309

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    +    V  +   +   ++ E    H  V    L 
Sbjct: 310 SRKVGGSGLGLSLVKKIVEMHHGSVVVESELGHGSVFIVTLP 351


>gi|315180120|gb|ADT87034.1| sensor histidine kinase [Vibrio furnissii NCTC 11218]
          Length = 681

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  + EL+     ++     E +  I
Sbjct: 435 LNQTRDKLIVHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELGEDANRVTEEIDAI 494

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            L         + +              +      +     + +       ++    +  
Sbjct: 495 MLQIDRIRNITRSLLQYSRHGGVQDEITWQHVNPIIDESMTLVKTGSKKRDIEFVTDLQA 554

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                    +  +IL+NL M A  ++   GK+TI  +D          I  ++  G    
Sbjct: 555 QSSVEVNRHQLLQILVNLQMNAIHAMNGKGKLTIRSEDWCEHGDVLGAIVHIEDEGCGI- 613

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   ++ D    +  D   +       L  +    +  +         S  L 
Sbjct: 614 KPEYLKRVFDPFYTTKRDGTGLGLSVSQSLLSQTGGEIRVQSEWGKGSTFSVYLP 668


>gi|255691148|ref|ZP_05414823.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260623241|gb|EEX46112.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 934

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 66/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    +  +    L  + + H+I +P+ AI    +LL E    +E  + +++   +  
Sbjct: 700 ARDKAEMMDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLVETADIEERREYMKIVRENND 757

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                       G VD  +   D+ + ++     + ++          
Sbjct: 758 LLLQLISDILDLSKIEAGTFEFSHGDVDVNLLCEDLVRSMQMKTKENVKLVFEPNFSICH 817

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           ++ +R    +++ N    A       G + +          F ++  G      +     
Sbjct: 818 ITSDRNRIYQVISNFVNNAIKFTSE-GNIRVGYVLKDEGLEFYVQDTGIGIEKKQLPHIF 876

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +S +    +       +  +    +  +            + 
Sbjct: 877 ERFVKLDSFVHGTGLGLSICQSIVEQLGGHIGVDSEKGKGSRFWFTIP 924


>gi|228901738|ref|ZP_04065910.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL
           4222]
 gi|228857870|gb|EEN02358.1| hypothetical protein bthur0014_29220 [Bacillus thuringiensis IBL
           4222]
          Length = 448

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELPK 448


>gi|228966149|ref|ZP_04127211.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793518|gb|EEM41059.1| hypothetical protein bthur0004_29640 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 353

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 123 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 180 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 239

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 240 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 298

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 299 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELPK 353


>gi|167638126|ref|ZP_02396404.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|177651128|ref|ZP_02933959.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|254736781|ref|ZP_05194487.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|167513943|gb|EDR89311.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|172082954|gb|EDT68016.1| sensor histidine kinase [Bacillus anthracis str. A0174]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|118479812|ref|YP_896963.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196044095|ref|ZP_03111332.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|118419037|gb|ABK87456.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196025431|gb|EDX64101.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|75762154|ref|ZP_00742053.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218898302|ref|YP_002446713.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|74490357|gb|EAO53674.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|218542070|gb|ACK94464.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 458

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGDVSVYSTKGEGTTVRVELPK 458


>gi|30264742|ref|NP_847119.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47530215|ref|YP_021564.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49187560|ref|YP_030813.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65322039|ref|ZP_00394998.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165869725|ref|ZP_02214383.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167634004|ref|ZP_02392327.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170685756|ref|ZP_02876979.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170705544|ref|ZP_02896008.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|190568318|ref|ZP_03021226.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227817461|ref|YP_002817470.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229604734|ref|YP_002868950.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254687480|ref|ZP_05151336.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254725043|ref|ZP_05186826.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254741818|ref|ZP_05199505.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254754584|ref|ZP_05206619.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254757416|ref|ZP_05209443.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30259417|gb|AAP28605.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47505363|gb|AAT34039.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49181487|gb|AAT56863.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164714554|gb|EDR20073.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167530805|gb|EDR93507.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129669|gb|EDS98532.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170670220|gb|EDT20960.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|190560574|gb|EDV14551.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227002759|gb|ACP12502.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229269142|gb|ACQ50779.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|254562006|ref|YP_003069101.1| Sensor protein, CheY-like domain [Methylobacterium extorquens DM4]
 gi|254269284|emb|CAX25250.1| putative Sensor protein, CheY-like domain [Methylobacterium
           extorquens DM4]
          Length = 577

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE----------------- 38
           + +     + +  + +L  L + I H+I +P+  I     ++E                 
Sbjct: 333 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGDLPPPDAPEGQRA 392

Query: 39  LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           L+        +   +       +   KF RL  G  G V+    +  +  +I+  +    
Sbjct: 393 LMKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 452

Query: 99  RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            V   ++G            ++++N+   A  ++   G +T++       ++  +   G 
Sbjct: 453 TVTRDFSGRAEISCTPALLNQVVMNILGNAADAIHGDGTITVATYSDAETDMIRISDTGP 512

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +       +   +   L+ E            + 
Sbjct: 513 GI-PEELREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLIVETAPGGGASFVIGIP 571

Query: 215 K 215
           +
Sbjct: 572 R 572


>gi|240139592|ref|YP_002964068.1| putative Sensor protein, CheY-like domain [Methylobacterium
           extorquens AM1]
 gi|240009565|gb|ACS40791.1| putative Sensor protein, CheY-like domain [Methylobacterium
           extorquens AM1]
          Length = 577

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE----------------- 38
           + +     + +  + +L  L + I H+I +P+  I     ++E                 
Sbjct: 333 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGDLPPPDAPEGQRA 392

Query: 39  LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           L+        +   +       +   KF RL  G  G V+    +  +  +I+  +    
Sbjct: 393 LMKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 452

Query: 99  RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            V   ++G            ++++N+   A  ++   G +T++       ++  +   G 
Sbjct: 453 TVTRDFSGRAEISCTPALLNQVVMNILGNAADAIHGDGTITVATYSDAETDMIRISDTGP 512

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +       +   +   L+ E            + 
Sbjct: 513 GI-PEELREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLIVETAPGGGASFVIGIP 571

Query: 215 K 215
           +
Sbjct: 572 R 572


>gi|229112136|ref|ZP_04241679.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15]
 gi|296505137|ref|YP_003666837.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|228671459|gb|EEL26760.1| hypothetical protein bcere0018_43790 [Bacillus cereus Rock1-15]
 gi|296326189|gb|ADH09117.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHT 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K        + N+ I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|229186930|ref|ZP_04314085.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1]
 gi|228596667|gb|EEK54332.1| hypothetical protein bcere0004_44710 [Bacillus cereus BGSC 6E1]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I ++  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVTVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|170748606|ref|YP_001754866.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium radiotolerans JCM 2831]
 gi|170655128|gb|ACB24183.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium radiotolerans JCM 2831]
          Length = 572

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 74/241 (30%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQLIRL 55
           + +     + +  + +L  L + I H+I +P+  I     ++E L     +       R 
Sbjct: 328 LTEAQSKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGELPDAAPEAAARA 387

Query: 56  SSMSAII-----------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
              +                      KF RL  G    V+    +  +  +I+  +    
Sbjct: 388 IDKARQRVGSMRMGLTRIQDLVLNLRKFSRLDEGERALVNVPEAIETVLALIQHKLGERI 447

Query: 99  RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            V+ S+ G            ++++N+   A  ++P+GG + I+ Q +   +   +   G 
Sbjct: 448 AVERSFAGRAEIHCTPALLNQVVMNILGNAADAMPQGGTIRITTQSNPELDEIRISDTGP 507

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +        +       +   +   L  E            + 
Sbjct: 508 GIPDT-LREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLTVETAPGGGACFVIGIP 566

Query: 215 K 215
           +
Sbjct: 567 R 567


>gi|218531017|ref|YP_002421833.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium chloromethanicum CM4]
 gi|218523320|gb|ACK83905.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium chloromethanicum CM4]
          Length = 577

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE----------------- 38
           + +     + +  + +L  L + I H+I +P+  I     ++E                 
Sbjct: 333 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGDLPPPDAPEGQRA 392

Query: 39  LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           L+        +   +       +   KF RL  G  G V+    +  +  +I+  +    
Sbjct: 393 LMKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 452

Query: 99  RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            V   ++G            ++++N+   A  ++   G +T++       ++  +   G 
Sbjct: 453 TVTRDFSGRAEISCTPALLNQVVMNILGNAADAIHGDGTITVATYSDAETDMIRISDTGP 512

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +       +   +   L+ E            + 
Sbjct: 513 GI-PEELREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLIVETAPGGGASFVIGIP 571

Query: 215 K 215
           +
Sbjct: 572 R 572


>gi|163852259|ref|YP_001640302.1| ATPase domain-containing protein [Methylobacterium extorquens PA1]
 gi|163663864|gb|ABY31231.1| ATP-binding region ATPase domain protein [Methylobacterium
           extorquens PA1]
          Length = 577

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLE----------------- 38
           + +     + +  + +L  L + I H+I +P+  I     ++E                 
Sbjct: 333 LTEAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLLGDLPPPDAPEGQRA 392

Query: 39  LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           L+        +   +       +   KF RL  G  G V+    +  +  +I+  +    
Sbjct: 393 LMKARDRVGSMRLGLTRIQDLVLNLRKFSRLDEGERGLVNVPEAIETVLALIQHKLGTRI 452

Query: 99  RVQVSWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            V   ++G            ++++N+   A  ++   G +T++       ++  +   G 
Sbjct: 453 TVTRDFSGRAEISCTPALLNQVVMNILGNAADAIHGDGTITVATYSDAETDMIRISDTGP 512

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +       +   +   L+ E            + 
Sbjct: 513 GI-PEELREKIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGSLIVETAPGGGASFVIGIP 571

Query: 215 K 215
           +
Sbjct: 572 R 572


>gi|30022741|ref|NP_834372.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|229129951|ref|ZP_04258917.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4]
 gi|29898300|gb|AAP11573.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|228653642|gb|EEL09514.1| hypothetical protein bcere0015_43910 [Bacillus cereus BDRD-Cer4]
          Length = 484

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHT 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K        + N+ I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|315280742|ref|ZP_07869555.1| sensor protein kinase WalK [Listeria marthii FSL S4-120]
 gi|313615610|gb|EFR88942.1| sensor protein kinase WalK [Listeria marthii FSL S4-120]
          Length = 610

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E   +   ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP 600


>gi|260768445|ref|ZP_05877379.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
 gi|260616475|gb|EEX41660.1| signal transduction histidine kinase [Vibrio furnissii CIP 102972]
          Length = 577

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 61/246 (24%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + +   L            + + H++ +P+ A+   ++LL +     + 
Sbjct: 185 LQKLVDLKTRELKVAQQLAEQANQSKSQFLAMMSHELRTPLNAVLGLIDLLRDDSDAYQQ 244

Query: 50  MQLIRLSSMSAIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ + + ++                   ++  +               +      I
Sbjct: 245 DMLEQMENSAELLLVIINDILDLSRIESGHFELQRHWISLSRKLQHALEYHSQVAQAKDI 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
             + +  +    E    S    +IL N+   A      G      V          +K +
Sbjct: 305 TFNVKASICEQFEYWVDSVRLTQILFNIIGNAIKFTHHGFVDVSLVTARDR-LEIEVKDS 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      E+   +    +              +       L       +          +
Sbjct: 364 GIGI-DNERIEHLFSPFIQADTSITRNYGGTGLGLAITKHLVELMGGSITVSSKLGEGSL 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTISIP 428


>gi|255029763|ref|ZP_05301714.1| hypothetical protein LmonL_13124 [Listeria monocytogenes LO28]
          Length = 383

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 156 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 215

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 216 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 275

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 276 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 335

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E   +   ++   L 
Sbjct: 336 GGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP 373


>gi|224502418|ref|ZP_03670725.1| hypothetical protein LmonFR_07844 [Listeria monocytogenes FSL
           R2-561]
          Length = 610

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E   +   ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP 600


>gi|241666668|ref|YP_002984752.1| Osmosensitive K channel His kinase sensor [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240862125|gb|ACS59790.1| Osmosensitive K channel His kinase sensor [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 902

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 51/233 (21%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
                  +  L + L + I HD+ +P+ AI  +   L +           +++  +   S
Sbjct: 659 RARLGAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRSDLLSTVVDES 718

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  +                      I           +     ++ +  +   
Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGSALRRAAKILDGHKTEMSIPADLPM 778

Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A    P    + I      +  +  +   G      +     
Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPEQSVIHIEGWADADNVVVQISDEGPGIPPTDLTRVF 838

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215
                    D       +               +           V +  L K
Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTITAGNRTGRPGAVFTIRLPK 891


>gi|16802334|ref|NP_463819.1| hypothetical protein lmo0288 [Listeria monocytogenes EGD-e]
 gi|47096377|ref|ZP_00233972.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498863|ref|ZP_03667212.1| hypothetical protein LmonF1_03828 [Listeria monocytogenes Finland
           1988]
 gi|254828748|ref|ZP_05233435.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|254831884|ref|ZP_05236539.1| hypothetical protein Lmon1_11045 [Listeria monocytogenes 10403S]
 gi|254900523|ref|ZP_05260447.1| hypothetical protein LmonJ_11934 [Listeria monocytogenes J0161]
 gi|254913526|ref|ZP_05263538.1| sensory box histidine kinase [Listeria monocytogenes J2818]
 gi|254937893|ref|ZP_05269590.1| sensory box histidine kinase [Listeria monocytogenes F6900]
 gi|255026055|ref|ZP_05298041.1| hypothetical protein LmonocytFSL_06310 [Listeria monocytogenes FSL
           J2-003]
 gi|284800587|ref|YP_003412452.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578]
 gi|284993773|ref|YP_003415541.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923]
 gi|16409653|emb|CAD00815.1| lmo0288 [Listeria monocytogenes EGD-e]
 gi|47015251|gb|EAL06189.1| sensory box histidine kinase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258601155|gb|EEW14480.1| sensory box histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|258610501|gb|EEW23109.1| sensory box histidine kinase [Listeria monocytogenes F6900]
 gi|284056149|gb|ADB67090.1| hypothetical protein LM5578_0334 [Listeria monocytogenes 08-5578]
 gi|284059240|gb|ADB70179.1| hypothetical protein LM5923_0333 [Listeria monocytogenes 08-5923]
 gi|293591536|gb|EFF99870.1| sensory box histidine kinase [Listeria monocytogenes J2818]
          Length = 610

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E   +   ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLP 600


>gi|323492685|ref|ZP_08097829.1| hypothetical protein VIBR0546_00405 [Vibrio brasiliensis LMG 20546]
 gi|323313060|gb|EGA66180.1| hypothetical protein VIBR0546_00405 [Vibrio brasiliensis LMG 20546]
          Length = 676

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++EL+     D+     E ++ I
Sbjct: 431 LNQTRDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMQFELGDDSNRVKEEIEAI 490

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +S 
Sbjct: 491 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIVEESITLVKTGTKKRGVEFETDLSA 550

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M    ++                      I  +K +G    
Sbjct: 551 HTSVEVNRHQLLQILVNLQMNGIHAMQGKGLLSISTEDWIEGGKSVGAIVHVKDHGCGI- 609

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I      +  D   +       +  ++   L            S  L 
Sbjct: 610 KEENLKRIFSPFYTTKRDGTGLGLSVSQSILSQSGGELKVTSEWGKGSCFSIYLP 664


>gi|229182146|ref|ZP_04309433.1| hypothetical protein bcere0005_54620 [Bacillus cereus 172560W]
 gi|228601320|gb|EEK58854.1| hypothetical protein bcere0005_54620 [Bacillus cereus 172560W]
          Length = 801

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQSYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + ++++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|197120179|ref|YP_002140606.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197089539|gb|ACH40810.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 468

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLSSMSAIIRLKFM 67
             L + I H+I +P+  I  +++ L         E   + E +       +     +   
Sbjct: 248 GQLAAGIAHEIRNPLNYISLAIDHLKSEFLPSCPEKAQDLESIANNIKEEVRKANYMVLN 307

Query: 68  RLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
            + +G    +              ++ + +        V      +   +  +   +   
Sbjct: 308 FMNYGRPLKLRLQRVCYPELVDKAMQLMKDRLDERGIEVVREIPEDLPPMLADPELMRNC 367

Query: 122 LFM---VAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           L      +  ++P GGK TI    +    +   +    G      +   ++      +  
Sbjct: 368 LCNFISNSTQAMPEGGKFTIGASLAPETGQFCLTFSDEGTGIEPQDL-EKVFQPYFTTKE 426

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +  E+   +            S  L 
Sbjct: 427 AGIGLGLAITERIVREHGGSIAVRSTKGEGTTFSVTLP 464


>gi|148655456|ref|YP_001275661.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
 gi|148567566|gb|ABQ89711.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
          Length = 391

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 71/235 (30%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
                 L  +D L +   + + H++ +P+ AI   LEL +         ++ + + +I  
Sbjct: 157 SARNAELQELDRLKSTFLATLSHELRTPLTAILGYLELFERRAFGLLTDVQGQAIGVIAR 216

Query: 56  SSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           ++      L  +                   D +  +    Q +     ++    +  T 
Sbjct: 217 NARILSRILNNLLYLQEVRSNEIRRVPVVIHDVVREIIAEMQPLAHAAHLELTSSIQPTA 276

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +       + L  L   A    P  G+++++V D  +  +  ++  G      E   +
Sbjct: 277 VYMGDPIGIGQALRALIDNAVKFTPAPGRISVTVIDEPSRVLVRVEDTGIGI-PAEAHEK 335

Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I     +             +       +   +  ++      +     + +L +
Sbjct: 336 IFLPFYQIDDTLARPYAGVGLGLAIARHVIEAHGGQISVRSAVNAGSAFTVVLPR 390


>gi|47569986|ref|ZP_00240649.1| sensor histidine kinase [Bacillus cereus G9241]
 gi|47553334|gb|EAL11722.1| sensor histidine kinase [Bacillus cereus G9241]
          Length = 356

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRL----AFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKI 109
           +       + +                   L    +   +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPEKVNYRLDQQLKQIVLNSEPLWDEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI + + +      ++ +G      +    
Sbjct: 234 HITADQESMSQVWINLIYNSIKFTPSGGTITIQLNEYETLVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 294 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 346


>gi|302388790|ref|YP_003824611.1| histidine kinase [Thermosediminibacter oceani DSM 16646]
 gi|302199418|gb|ADL06988.1| histidine kinase [Thermosediminibacter oceani DSM 16646]
          Length = 321

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           K     L ++ ++  L +   H+I +P+ +I   L+++D    +     E ++++     
Sbjct: 95  KRRLSYLENLSVIGELAASAVHEIKNPLFSIRGFLQIIDNSFSDDDKRKEYIRIMISEID 154

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKID 110
                ++   +           + + ++ + I +       +Q           +     
Sbjct: 155 RLEGLVRDFLMLAKTRARSKGSVIVCELIRDIAELYKNRMEMQNIKFSLMAEDESVCIPG 214

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  ++ +NL   A  ++  GG + + V     + +  ++  G     PE   +I   
Sbjct: 215 NREQLEQVFINLIQNALEAMENGGNIEVVVYRKNEKLVIEVRDEGKGI-SPEIEKKIFTP 273

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +  +    +  E+  R+     +    V      
Sbjct: 274 FFTNKKNGTGLGLFLSKKIVEEHMGRIYFRSTEGKGTVFFLEFP 317


>gi|256841138|ref|ZP_05546645.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736981|gb|EEU50308.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 491

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 51/227 (22%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K+   +L    L +   + + H+I +P+ AI    ++L      +   Q I +   +  
Sbjct: 261 QKSKDLSL----LKSTFLANMTHEIRTPLNAIVGFSDMLGLEDDPEMREQYISMIKENNT 316

Query: 62  IR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
                      +  +          D        +        + K V++          
Sbjct: 317 ALLELINDTLEMSRIESNTINWSYEDVNPLAIMHDVYEYASPHISKNVRLILDDSPNVSL 376

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +   IL  L   A     +G               F +   GN     +      
Sbjct: 377 HTDKHKLMLILKKLLSNALRYTEKGEIHFGYQSLYPVSVQFYVSDTGNGIPKDKLGHIFE 436

Query: 169 DGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       +       +     +      S  L 
Sbjct: 437 RFVQLNEFQPGTGLGLSICKGMVTAMGGTIWVNSEEGKGSTFSFKLP 483


>gi|239627745|ref|ZP_04670776.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239517891|gb|EEQ57757.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 506

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +N    +        L S I HD+ +PI AI   +E + +      E +     +  +
Sbjct: 253 LRENADEKIQDDKENKELISNISHDLKTPITAIKGYVEGIMDGVASSPERLDKYIRTIYN 312

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102
               +  +     +   +D+        ++       D                     V
Sbjct: 313 KANDMDRLIDELTFYSKIDTNKIPYAFTKINVAQYFRDCVEEVGVDMEARGIELGYFNYV 372

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I  + +  +++ N+   +   L +    + I ++D  +     ++ NG      
Sbjct: 373 DEDIVVIADAEQMKRVINNIISNSVKYLDKKKGIINIRIKDVGDFIQVEIEDNGKGIAAK 432

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  R+     +     +  +L K
Sbjct: 433 DLPNIFDRFYRTDSSRNSSQGGSGIGLSIVRKIIEDHGGRIWATSKEGIGTEIHFVLRK 491


>gi|196231875|ref|ZP_03130731.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196223997|gb|EDY18511.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1088

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 67/241 (27%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            ++I       +L +       SR+ H++ +P+ AI    +L++   +   + + +   S
Sbjct: 694 EESIRQAREQAELASRAKTEFLSRMSHELRTPLNAILGFTQLMETETLGPSLAESVEHVS 753

Query: 58  MSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +                            ++    L +  + I+               
Sbjct: 754 RAGKHLLSLINEVLDISRIDAGRFALSPEPIEVHGFLSEAIESIQPLATRHVIPVTLEPA 813

Query: 107 EKIDLS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                        +   +++ N+   A       G+VT+S +        ++   G    
Sbjct: 814 TAEMPPLQVLADRQRVHQVMYNILSNAVKYNRINGRVTVSYRVDGPRIRITIADTGRGI- 872

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PEK +++           + I+   I       + +     L  E            L 
Sbjct: 873 EPEKLSRLFLPFERLGAESTDIEGSGIGLALSRGIVNALHGELHVESRVGEGSTFWLTLP 932

Query: 215 K 215
           +
Sbjct: 933 R 933


>gi|167629701|ref|YP_001680200.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592441|gb|ABZ84189.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 560

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 61/222 (27%), Gaps = 12/222 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     L  + LV  + + I H+I +P+  +   L+L        +  +  RL       
Sbjct: 328 ERELARLDRLHLVGQVAAGIGHEIRNPLTTVRGFLQLFGAKADLVQYDEYFRLMISELDR 387

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                       K            + +  L  +             + +          
Sbjct: 388 ANDIITEFLSLAKTKPKQLRLQDLNEIITSLHPLLMAQAFKKDKQLVIDLGRIPLLALDE 447

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            E  ++LLNL   A  ++ + G VTI         + +++  G      E  ++I     
Sbjct: 448 HEIRQLLLNLVNNAMDAMKQRGTVTIRTYVDGERVLLAVRDEGEGI-AEEIQSKIGTPFF 506

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +   ++ R+  E              
Sbjct: 507 TTKAHGTGLGLATCYSIVERHRGRIDYETGP-KGTTFFIAFP 547


>gi|152972865|ref|YP_001338011.1| sensor protein ZraS [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957714|gb|ABR79744.1| sensor kinase of Zn/Pb responsive two-component regulatory system
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
          Length = 464

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQ 51
            ++    L +      LVAL  L + + H+I +P+ +I        E     G   ++ Q
Sbjct: 223 RRSRKQLLEAMARKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERTPPGGESHQLAQ 282

Query: 52  LIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
           ++   +          L+ +R A     +VD    +    Q++           +     
Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQTVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                        ++LLNL++ A  ++ R G + ++  ++  +     +  +G      E
Sbjct: 343 ELTTISADPDRLNQVLLNLYLNAMQAIGRDGVIRVTASEADRQRVKIVVTDSGKGMSDEE 402

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I      +  D   +    V  +  ++   +  E       + +  L 
Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453


>gi|121587829|ref|ZP_01677587.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae 2740-80]
 gi|153820099|ref|ZP_01972766.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae NCTC
           8457]
 gi|153822498|ref|ZP_01975165.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae B33]
 gi|229507980|ref|ZP_04397485.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae BX 330286]
 gi|229511783|ref|ZP_04401262.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae B33]
 gi|229518920|ref|ZP_04408363.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae RC9]
 gi|229607526|ref|YP_002878174.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae MJ-1236]
 gi|254849012|ref|ZP_05238362.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MO10]
 gi|255745317|ref|ZP_05419266.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholera CIRS 101]
 gi|262156041|ref|ZP_06029161.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae INDRE 91/1]
 gi|298498038|ref|ZP_07007845.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MAK 757]
 gi|121547930|gb|EAX58013.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae 2740-80]
 gi|126509360|gb|EAZ71954.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae NCTC
           8457]
 gi|126519972|gb|EAZ77195.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae B33]
 gi|229343609|gb|EEO08584.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae RC9]
 gi|229351748|gb|EEO16689.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae B33]
 gi|229355485|gb|EEO20406.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae BX 330286]
 gi|229370181|gb|ACQ60604.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae MJ-1236]
 gi|254844717|gb|EET23131.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MO10]
 gi|255737147|gb|EET92543.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholera CIRS 101]
 gi|262030219|gb|EEY48863.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae INDRE 91/1]
 gi|297542371|gb|EFH78421.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MAK 757]
          Length = 597

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|228921981|ref|ZP_04085292.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837589|gb|EEM82919.1| hypothetical protein bthur0011_29730 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 448

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIREFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVRVELPK 448


>gi|227082055|ref|YP_002810606.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           M66-2]
 gi|227009943|gb|ACP06155.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           M66-2]
          Length = 597

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|30018834|ref|NP_830465.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|229126082|ref|ZP_04255104.1| hypothetical protein bcere0015_5450 [Bacillus cereus BDRD-Cer4]
 gi|229143377|ref|ZP_04271808.1| hypothetical protein bcere0012_5490 [Bacillus cereus BDRD-ST24]
 gi|29894376|gb|AAP07666.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|228640184|gb|EEK96583.1| hypothetical protein bcere0012_5490 [Bacillus cereus BDRD-ST24]
 gi|228657404|gb|EEL13220.1| hypothetical protein bcere0015_5450 [Bacillus cereus BDRD-Cer4]
          Length = 463

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 15/219 (6%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +                  + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ +       +++  G      +                 +
Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPLEDLPHIFDRFYRVDKARTRS 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454


>gi|53711829|ref|YP_097821.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52214694|dbj|BAD47287.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 411

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 61/229 (26%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                +S+  L +   + + H+I +P+ AI     LL     + E    + + + +    
Sbjct: 181 EKENAVSAEKLKSAFIANMSHEIRTPLNAIVGFSGLLASADDDTEKKMYLDIVAENNDRL 240

Query: 64  LKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGE 107
           L+ +                +    D    L  +  ++   +     +++     +    
Sbjct: 241 LQIVTDVLDLSKIESGSLDFHYSEFDVNDLLCGLHGILNIRLKDKPEIKLNCEAGTDEWI 300

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +I+ NL   A      G          ++E  F +   G      E   +I
Sbjct: 301 IYSEQHRIVQIITNLVHNAMKFTHSGEICFGCRPQGEDEIYFYVSDTGIGIPAGE-QDKI 359

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D     +  +    +       +       +  E            L 
Sbjct: 360 FDRFTKLDHEVPGTGLGLTLSQTIVQNLGGEMGVESEVTKGSTFWFTLP 408


>gi|332971338|gb|EGK10301.1| putative membrane protein [Desmospora sp. 8437]
          Length = 488

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIR 63
             + ++  + +   H+I +P+ +I   L+++     E   +      +++          
Sbjct: 267 DRLAMIGQMAAGTAHEIRNPLTSIRGFLQVIRHTLDERGDLKGQGYAEIMLREIDRINHL 326

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRE 114
           L    L           + L    + +   I  +  +          +            
Sbjct: 327 LGEFLLMGKPRNVKKRRVELDHSLRELLPIIENEAILHNIEVRYLPGLKDFPPVWADPEL 386

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             +++LNL      ++  GG + + +   +   I  ++ +G      E    I D    +
Sbjct: 387 LKQVVLNLCKNGIEAMGEGGLLQLRLSGDEERLILEVEDHGPGIPDSEINL-IFDPFYTT 445

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +       +  +    +     +    + S +L 
Sbjct: 446 KENGTGLGLAVSKQIIEDIGGEIQVSSGE-AGSIFSVILP 484


>gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 383

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 70/241 (29%), Gaps = 26/241 (10%)

Query: 1   MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + +     + +++       L +   S I HD  +P+ +I     LL+          + 
Sbjct: 137 LQQAKTQAIKALEQEQELNHLKSEFVSMISHDFRNPLTSIQGFAGLLECGSKLPSPEIIN 196

Query: 54  RLSSMSAIIRLKFMRLAFG------------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           R  S         + L                   V   +     E +     ++  + Q
Sbjct: 197 RYVSKINNAVDHLLCLLDEILLIGSIESGKIQYHPVSVNLEEFCYELIDTLQYSLGNQHQ 256

Query: 102 VSWTGEKIDLSRER----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           + ++      +        +IL NL   A    P G K+ + ++   +  IF ++  G  
Sbjct: 257 ICFSCSDNTGAEMDIVLLQRILTNLLSNAIKYSPSGSKIDLVLECQNHVTIFQIRDQGMG 316

Query: 158 AR---FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    F      N    I    +    V      ++  +  E  ++     +  L 
Sbjct: 317 IPIENQSHLFEAFYRCNNVGDIKGTGLGLAIVKKCVEVHQGNISLESQENLGTTFTVSLP 376

Query: 215 K 215
           +
Sbjct: 377 R 377


>gi|220915558|ref|YP_002490862.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953412|gb|ACL63796.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 300

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 61/225 (27%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             L     +++ H++ +P+ +I   +E L      +   + E ++++   +      +  
Sbjct: 69  AKLQTDFVNKVSHELRTPLTSIRMFVETLQLGRLQDPQRQREALEIVAEETARLSGLINR 128

Query: 67  MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +                                   +    +++         +  +R+ 
Sbjct: 129 LLDWARMESGRRVYELSRQPLGPVLDAALAAFEPQLLHHPVQLERDLPPRLPSVMADRSA 188

Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE- 173
           ++   LNL   A        ++ +S   S      ++  NG      ++           
Sbjct: 189 LVEAVLNLLNNAFKYTGPDKRIRLSAVASGPTVTIAVTDNGPGIPLRDQKHVFDKFYRAS 248

Query: 174 ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                T++   +    V  +   +  ++  E            L 
Sbjct: 249 DPLRRTVEGTGLGLAMVKHIVVGHGGKVSVESEPGCGATFRIALP 293


>gi|229083887|ref|ZP_04216194.1| hypothetical protein bcere0022_5430 [Bacillus cereus Rock3-44]
 gi|228699408|gb|EEL52086.1| hypothetical protein bcere0022_5430 [Bacillus cereus Rock3-44]
          Length = 424

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 16/222 (7%), Positives = 57/222 (25%), Gaps = 20/222 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              +   + + H++ +P+  +    ++ L +     +  + + +    A      ++  F
Sbjct: 194 KERSEFLASVAHELRTPLTYVRGYADIALKDHTSPKQRQRYLSIIKDEADSITNLVQDLF 253

Query: 72  GYTGSVDSLIGLGD--------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                      +                   ++ +   +        +       +   +
Sbjct: 254 LLAQMEQHNFSIETAKVQVEDFLSRIVTKVNIMYEIKHIRVSFTCPSSLSIALDEQRFEQ 313

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++N+   A+A      ++ I V   +     S++  G      +               
Sbjct: 314 VIINILNNAYAHSAEHSQIFIFVTVHQTHIEISIQDAGEGIPEKDIPHIFDRFYRVDKAR 373

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +   +   +      DH    +  L 
Sbjct: 374 SRATGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFTISLP 415


>gi|256828132|ref|YP_003156860.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577308|gb|ACU88444.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 504

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 66/229 (28%), Gaps = 16/229 (6%)

Query: 2   AKNICFNLS-SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVM 50
            +N+   L  +  L       + + H++  P+  I    +L ++            D ++
Sbjct: 261 KRNLERQLQHADRLAKIGQFAAGVAHELNEPLANILGFAQLAEQTPGLPAQAMKDLDSII 320

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106
           +    S       + F R        +D    + D    IE   +      +        
Sbjct: 321 KAALHSREVIKKLMIFGRQVPLRKTLIDLNQVIRDSLYFIEMSASRGKVEVRMNLAEGLP 380

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +   +   ++++NL +    ++P GG +TI     K++    +  +G           
Sbjct: 381 TIMADPQHLKQVIVNLVVNGIHAMPGGGVLTIETLSFKDDVYLLVSDSGVGMTPDVLRQI 440

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +D    +    V  + H +   +  E              
Sbjct: 441 FNPFFTTKDVDQGTGLGLAVVHGIVHAHGGVIEVESEPGRGTRFEITFP 489


>gi|89076061|ref|ZP_01162421.1| osmolarity sensor protein [Photobacterium sp. SKA34]
 gi|89048213|gb|EAR53795.1| osmolarity sensor protein [Photobacterium sp. SKA34]
          Length = 444

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 61/213 (28%), Gaps = 8/213 (3%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKF 66
              +  ALL + + HD+ +P+  I  + E++        E  +      +++ +      
Sbjct: 226 QLEEDRALLMAGVSHDLRTPLTRIRLATEMMSPEDSYLAESMITDTEECNAIISQFMDYL 285

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
                     +D    L D+      +     +      G     +    + + NL + A
Sbjct: 286 KSTKKQEEEEIDLNTLLIDVAHTEGSYGKTIDQQLGEIPGTVSANAVALKRAVANLVVNA 345

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDI 181
                   K++      +    F ++ +G      +                S  +   +
Sbjct: 346 QRYGKGWVKISSGASAYRKSVWFCVEDDGPGIAPDQVTKMFQPLTRGDAARGSEAEGTGL 405

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +L     +  + +   L 
Sbjct: 406 GLAIVKRIVDQHDGVILVRNRSEGGLRVEVTLP 438


>gi|229116715|ref|ZP_04246099.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3]
 gi|228666547|gb|EEL22005.1| hypothetical protein bcere0017_29990 [Bacillus cereus Rock1-3]
          Length = 448

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG V   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGM-EKEGMDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVRVELPK 448


>gi|254286859|ref|ZP_04961811.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae
           AM-19226]
 gi|150423009|gb|EDN14958.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae
           AM-19226]
          Length = 597

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|15641927|ref|NP_231559.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|9656461|gb|AAF95073.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae O1
           biovar El Tor str. N16961]
          Length = 597

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|329930198|ref|ZP_08283811.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
 gi|328935220|gb|EGG31701.1| PAS domain S-box protein [Paenibacillus sp. HGF5]
          Length = 764

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 71/222 (31%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
           + +      ++ V  L + + H+I +P+  +   L+L  +          +    +  I 
Sbjct: 535 EELLRRSEKLNTVGQLAAGVAHEIRNPLTTLRGFLQLQQQTHQANPDHIDLMLSELDRIN 594

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEKIDLSR 113
           L     +I  K   + F        +  +            ++ ++  +           
Sbjct: 595 LIVSEFLILAKPQAINFQERDVGIIMGDVISFLDSQAHLYGIEFKLDFIEEPTFVHCEEN 654

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  ++ +NL   A  ++P GG + I +   + ++    ++  G      +    + +  +
Sbjct: 655 QLKQVFINLLKNAIEAMPEGGNIWIRLTRPQVDQIQIDIRDEGQGI-PEDMMPHLGEPFI 713

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +   ++  +  E        +S +L 
Sbjct: 714 TNKETGTGLGLMVSQRIIQGHRGTMEIESEVGVGTRVSIVLP 755


>gi|324324689|gb|ADY19949.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 463

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRISEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHIRISVIEENKRITITIEDEGEGIPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVDHGSCFIISLP 454


>gi|301054746|ref|YP_003792957.1| histidine kinase [Bacillus anthracis CI]
 gi|300376915|gb|ADK05819.1| histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 458

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|299782693|gb|ADJ40691.1| Sensor protein [Lactobacillus fermentum CECT 5716]
          Length = 619

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 66/226 (29%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAF 71
             S + H++ +P+ ++ + +E L +  I D  +       +   +     +    + L+ 
Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAINDPELAPRFLGVVSDETERMIRMINDLLSLSR 439

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------TGEKIDLSR 113
             +G+    +   +I ++    +     +  +                          + 
Sbjct: 440 MDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSKKKYTIVRYFTKKDLWVEIDTD 499

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +++ N+   A    P GG +T  + ++ N  I S+   G      +           
Sbjct: 500 KFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKDLGHIFDRFFRV 559

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + ++         L 
Sbjct: 560 DKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|260662553|ref|ZP_05863448.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
 gi|260553244|gb|EEX26187.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
          Length = 619

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 66/226 (29%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAF 71
             S + H++ +P+ ++ + +E L +  I D  +       +   +     +    + L+ 
Sbjct: 380 FVSNVSHELRTPLTSVKSYVEALSDGAINDPELAPRFLGVVSDETERMIRMINDLLSLSR 439

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------TGEKIDLSR 113
             +G+    +   +I ++    +     +  +                          + 
Sbjct: 440 MDSGTAKLNLEYVNINELFNYILNRFDMIIKNEAADPSQKKYTIVRYLTKKDLWVEIDTD 499

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +++ N+   A    P GG +T  + ++ N  I S+   G      +           
Sbjct: 500 KFTQVVDNIMNNAVKYSPDGGVITARLLETHNHVILSISDQGLGIPRKDLGHIFDRFFRV 559

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       + +    ++  + ++         L 
Sbjct: 560 DKARSRKQGGTGLGLAISKEVVNLLGGQIWVDSVEGKGSTFYISLP 605


>gi|257870079|ref|ZP_05649732.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804243|gb|EEV33065.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 613

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 69/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++ + +E L E   +D           +             L   R
Sbjct: 383 FVSNVSHELRTPLTSMRSYIEALSEGAWQDPEIAPNFLKVTLDETDRMIRMINDLLSLSR 442

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
           +  G            + +  + D   ++         ++  +T  ++ +  +     ++
Sbjct: 443 MDSGNAQLQLEYINFNELVSFVLDRFDMMVTNENKKYVIRREFTKRELWVEVDTDKMIQV 502

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T+ + ++ N  + S+   G      +    F +    +    
Sbjct: 503 IDNIMNNAIKYSPDGGVITVKLMETHNNIVLSINDQGLGIPKKDLTKIFDRFYRVDKARA 562

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +   +  E  ++       +L 
Sbjct: 563 RQQGGTGLGLAISREVIKSHGGAIWAESRENRGSTFYIMLP 603


>gi|254416757|ref|ZP_05030507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196176497|gb|EDX71511.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 657

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +     L   +    +     + + H++ +P+  I    +LL    +  + +     + 
Sbjct: 275 EEERIQLLEKAEAANRIKDEFLAIVSHELRTPLNPILGWSKLLRTRKLNQDKVDQALETI 334

Query: 58  MSAIIRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                    +                        V  +    +  ++     +++   Q+
Sbjct: 335 ERNASLQAQLIDDLLDVSRILRGKLNLQTLRVDLVRVIQAAIETMRLAAAAKSIEIDTQL 394

Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             T   +        +++ NL   A    P+GG++T+ +Q+  ++    +   G      
Sbjct: 395 DSTVGFVSGDPNRLQQVVWNLLSNAVKFTPKGGRITVRLQEIDSQAQIQVSDTGQGISPD 454

Query: 162 E-----KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                  + +  +     ++    +    V  L   +  R+  E          +  L 
Sbjct: 455 FFPYIFDYFRQENSTTTRSVGGLGLGLAIVRHLIELHGGRIEAESEGIGQGATFTVTLP 513


>gi|239637988|ref|ZP_04678949.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           warneri L37603]
 gi|239596551|gb|EEQ79087.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           warneri L37603]
          Length = 564

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 21/226 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
           NL  ++ L     + + H++ +PI +I    E L     ++    +  + +I   S    
Sbjct: 334 NLQKLENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEESLNMFLNIILKESNRIE 393

Query: 62  IRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +               Y    +      D  Q       +    ++         
Sbjct: 394 SLVMDLLDLSHIEQQNEITTSYMNLSELAYTTIDNLQNQAQNKNITIESKIERDVIFKAN 453

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             + A+++ NL   A        KV +SV          ++  G      E    F +  
Sbjct: 454 ENKIAQVITNLLSNAINYSTNDNKVIVSVYREGKRVNLEIQDFGIGISAEEQKHIFERFY 513

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           +       +   +  R+      +        
Sbjct: 514 RVDKARSRDSGGTGLGLSITKHIVESHNGRISVISRLNEGSTFKVT 559


>gi|134300132|ref|YP_001113628.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Desulfotomaculum reducens MI-1]
 gi|134052832|gb|ABO50803.1| GAF sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 782

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 63/219 (28%), Gaps = 12/219 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     L  +++V  + + I H++ +P+  +   L++L +     ++ +   L       
Sbjct: 552 EKEMIRLDRLNMVGEMAAGIAHEVRNPLTTVRGFLQMLGKKNDNGKLQEYYALMIEELDR 611

Query: 63  RLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LS 112
                       R         D    +  +  +I           V             
Sbjct: 612 ANTIISEFLSTARNKPDKLELEDLNTIIDTLFPLIAADAMNSDCNVVRELTNISPILLNQ 671

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +E  +++LNL   +  ++  GG +TI       E I S+   G      E   ++     
Sbjct: 672 KEIRQLILNLAHNSLEAMTPGGTLTIKTFMVGEEIILSMADTGKGI-ETEILDKLGTPFF 730

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            +  +   +       +   +   +  +           
Sbjct: 731 TTKENGTGLGLAVCYGIVRRHHASIEIDTSP-KGTTFYI 768


>gi|217977986|ref|YP_002362133.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503362|gb|ACK50771.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 630

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSL---ELLDEVGIEDE 48
            +     L  +               + S + H++  P+ AI + L     L +     +
Sbjct: 378 RQETQQRLQDLQSALVHISRFTAMGEMASTLAHELNQPLTAIASYLNGCRRLLDADRGGD 437

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106
            + ++R     A  +               +        + +   I     + +      
Sbjct: 438 KVAMVRDGVERAAAQALRAGQIIKRMRQFVARGESERQVESLPKLIEEASALALVGIKET 497

Query: 107 -------------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFS 150
                          +    +  +++LNL   A  ++    +  +++  +    +    S
Sbjct: 498 GVRVGFAFDPRVAFVLVDKIQIEQVILNLMRNAIEAMLDCARRDLTIATAELAGDMVEVS 557

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +   G     P+   Q+    V +  D   I       +   +  RL  E       V  
Sbjct: 558 VADTGPGI-SPDIAAQLFQPFVTTKPDGLGIGLSISRTIIEAHGGRLWVEPNPGGGTVFR 616

Query: 211 ALLE 214
             L+
Sbjct: 617 LTLK 620


>gi|169828805|ref|YP_001698963.1| putative sensor-like histidine kinase yclK [Lysinibacillus
           sphaericus C3-41]
 gi|168993293|gb|ACA40833.1| Hypothetical sensor-like histidine kinase yclK [Lysinibacillus
           sphaericus C3-41]
          Length = 443

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSS 57
           + +  +L  ++ +     S + H++ SP+ +I      L +V +     +  + +I   +
Sbjct: 208 EEMASDLQQLEQMRKEFVSNVSHEVQSPLTSISGYALALKQVDLTIEEKNRYLDIIMAEA 267

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGL---------GDIEQVIEDFIAVDKRVQVSWTGEK 108
                    +            +  +           I  +   ++A +    +      
Sbjct: 268 QRMSKMSDSLLKLSLLESKAPPMQLVSLSLDEQIRRVIVAIQPQWMAKNIHFNLQLQSVY 327

Query: 109 IDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +    ++  ++  NL   +      G  + IS+    +  +  +   G      ++    
Sbjct: 328 VMADYDQLNQVWTNLLTNSIKFSKDGDTIKISMSQEAHHVLVRITDTGIGISQEDQKRVF 387

Query: 168 VDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +   +    V  +   +K  +  E   +        L 
Sbjct: 388 ERFFKADRSHSRKYEGSGMGLAIVKQIVSLHKGDVRVESELEQGTTFIVTLP 439


>gi|121535086|ref|ZP_01666903.1| multi-sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
 gi|121306336|gb|EAX47261.1| multi-sensor signal transduction histidine kinase [Thermosinus
           carboxydivorans Nor1]
          Length = 593

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 63/223 (28%), Gaps = 24/223 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIRLKFMRLA 70
           A   +   H++ +P+ AI      L +  I +  +      +I   +      +  +   
Sbjct: 366 AEFVANASHELKTPLTAIKGFAATLLDGAIREPALATKFVTIIHDEAERMNRLVDDLLQL 425

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------------IDLSRERA 116
                         +   + +   AV + +   W  ++              +       
Sbjct: 426 ASLDARETGQQARLEPTDIYKVAAAVVEELSAQWRAKRLSVLLDAPARPLAVMANPDWLR 485

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GN 171
           ++L+NL   +    P GGK+ +    + ++ +  ++ +G      +    F +       
Sbjct: 486 QVLVNLLDNSIKYTPEGGKILVKWWQASDKAVVMVQDSGIGIPAKDLPFIFDRFYRVDRA 545

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++      D     +  L 
Sbjct: 546 RSRRAGGTGLGLAIVKHIIETLGGKIDVVSEPDAGTTFTFTLP 588


>gi|46201957|ref|ZP_00208322.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 413

 Score =  119 bits (298), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 58/235 (24%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  + +   + + H++ +P+  I    EL+ +   +DE  +   +   S+
Sbjct: 172 LDEARKRAEEASRMKSEFLANMSHELRTPLNGIIGFSELIRDEAADDETRENADIIEKSS 231

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 + +       + +              I +  +V  + 
Sbjct: 232 RHLLELVNSILDIAKIEAGAMTLAVQDVKLAPLVAEAASVHHSAAQAKGITLSSQVSDNC 291

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I+ NL   A     +G        +     IF +   G         
Sbjct: 292 PETIRADPLRLRQIIHNLLSNAVKFTEKGEVSLSVELEPG-HLIFRVSDTGAGIPEGMLH 350

Query: 165 T-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 + VD  +  +     +       L       +  +       V    L 
Sbjct: 351 AIFEKFRQVDSFLTRSHSGTGLGLTLARHLVELMGGTIGVQSTVGKGTVFHFTLP 405


>gi|295397797|ref|ZP_06807864.1| Sensory transduction histidine kinase [Aerococcus viridans ATCC
           11563]
 gi|294973966|gb|EFG49726.1| Sensory transduction histidine kinase [Aerococcus viridans ATCC
           11563]
          Length = 469

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 62/222 (27%), Gaps = 17/222 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
              ++   L S I H+I +P+  +  ++E + +    + +E +             +  +
Sbjct: 241 RQQEIRNRLSSDIAHEIRTPLTTLKGNIEAMIDGVWEVSEERLYHCYEEVNRIARLIGQI 300

Query: 68  RLAFGY-TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---------SRERAK 117
                  +          D+ ++ +      + + +    E               +  +
Sbjct: 301 DRINEIESHESQLQKSSFDLLELTQQVAGTFQALLIEKGIECAINGEAVLISADRDKIHQ 360

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNV 172
           ++ NL   A    P GG + + V        F +   G      E    F +      + 
Sbjct: 361 VVTNLLYNAIKFTPSGGHIDLQVSQISGVASFKITDTGQGIPPNEINQVFERFYMAEPSR 420

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    I    V  + + +   +  E            L 
Sbjct: 421 NRKLGGQGIGLSIVKGIVNAHHGTISVESTYGKGTTFVVSLP 462


>gi|163938573|ref|YP_001643457.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163860770|gb|ABY41829.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 456

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 15/219 (6%), Positives = 50/219 (22%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++  +     E                +          
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKENTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 68  RLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           ++           + L            V+     +        +       +   +++ 
Sbjct: 296 QMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLLVKLDEQRFEQVMA 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 454


>gi|163846453|ref|YP_001634497.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524228|ref|YP_002568699.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163667742|gb|ABY34108.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448107|gb|ACM52373.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 466

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+ +            L + I H++ +P+  I   LE + +     + E ++ +     
Sbjct: 216 MAEALQQADQQRR---QLTADIAHELRTPLSIIKGRLEGIQDGVYEADAEQIEALLTEVA 272

Query: 59  SAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                +  +                  +  +     +        +              
Sbjct: 273 LLERLINDLHLLALADAGQLPLYREVVSPQMLVNEAIRSFTPAANERNVRLSATIDDNLP 332

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
           +     +  A++L NL   A    P GG+V +S    ++   F ++  G      +    
Sbjct: 333 DIEVDPQRIAQVLGNLIGNALRHTPAGGEVIVSAHRDESGIRFEVRDTGAGIDPADLPYI 392

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +     +     +       L   +  ++           +S  L 
Sbjct: 393 FDRFYKADRARSRSSGGAGLGLAIARRLVEAHGGQIWATSALQQGTTVSFRLP 445


>gi|209546222|ref|YP_002278112.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209539079|gb|ACI59012.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 902

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 52/233 (22%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
                  +  L + L + I HD+ +P+ AI  +   L +           +++  +   S
Sbjct: 659 RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRSDLLSTVVDES 718

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  +                      I           +     ++ +  +   
Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGSALRRAAKMLERHRTEMSIPADLPM 778

Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A    P G  + I      +  +  +   G      +     
Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPEGSIIHIGGWADADNVVLQVSDEGPGIPPADLTRVF 838

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215
                    D       +               +           V +  L K
Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTIAAGNRTGRSGAVFTIRLPK 891


>gi|154250164|ref|YP_001410989.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154154100|gb|ABS61332.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 422

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 69/229 (30%), Gaps = 27/229 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFM 67
            L     S + H++ +P+ +IH   E L +  + ++      + +I   S      +  +
Sbjct: 185 KLRREFISNVSHELRTPLTSIHGYAEALLDDDLSNKELVRKFLGVIESESARMTRLINDL 244

Query: 68  -----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                      +  F        +  +  I + + +   V+   +               
Sbjct: 245 LDLEKLESGDAKFNFSDVNMCKVIERVVTILEPLAEDYGVELYTKCECKSTVYGDFDRLV 304

Query: 117 KILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +++LNL   A            KV +     +++ +F ++  G      +   ++ +   
Sbjct: 305 QLVLNLVDNAVKYTSIKETGEKKVFVKCYGKEDKLVFEVQDTGPGI-PEDAQKRLFERFY 363

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +    +    V ++A ++   +  E             +K
Sbjct: 364 RVDKARSRKVGGTGLGLSIVKMIADKHNATISFESKVGEGTTFRVYFKK 412


>gi|56963514|ref|YP_175245.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909757|dbj|BAD64284.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 321

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 10/221 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIRLS 56
           K       +M++V+ L + + H++ +P+  I   ++L      L E  I    ++L R+ 
Sbjct: 81  KQAHKRKEAMEVVSRLSAGVAHELRNPLTTIKGFIQLYSEVGELRESQINIMNIELERIE 140

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSR 113
           ++     L           S+     L  + +   V         ++ +S     +   +
Sbjct: 141 NIINDYVLLAEEPPARENESIQMAAFLQSLLKKNKVKRLTDGHPIKLNISEEATVLGSRK 200

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           E   +  NL   A  +  +   V I++          +   G+     E+   I      
Sbjct: 201 ELFLLFYNLLENAIDASVKHSPVHITMYAEGPNVCVEITDFGSGM-PAERLNYIGQPFYS 259

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +   +   +  E  D     +  +L 
Sbjct: 260 TKEKGTGLGLMICYRVVETHGGLIDIESKDKRGTNVKVILP 300


>gi|51246574|ref|YP_066458.1| Ntr two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50877611|emb|CAG37451.1| related to two-component system sensor histidine kinase (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 557

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 75/237 (31%), Gaps = 27/237 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + K +     +  L A+  + + I H+  +P+ AI  S ++L+E      G      +L 
Sbjct: 319 LEKQLR---QAEKLAAIGTMSASIAHEFRNPLTAISGSAQILEEDLINQAGETTISYELC 375

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------ 107
            +    +   L+ +     +     S      +++ +++ +A ++   +           
Sbjct: 376 AIILRESDRLLETISNFLIFAKPEHSEYNWFSLKKCVKEILASNRTNPLWPESCLIEVKI 435

Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGK--------VTISVQDSKNENIFSLKINGNL 157
             ++DL  ++ +I   L  +   +L    +               +      ++  NG  
Sbjct: 436 EQQLDLWADKNQIQTTLNHLLDNALCFCPRGKEKIRIEAHEYSIGAGKFVQINIGDNGTG 495

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I +    +  D   +    V      +K R+               L 
Sbjct: 496 VASAE-MRKIFEPFYTTRADGTGLGLSIVHQYVSAHKGRVAVGKSPLGGAEFQVSLP 551


>gi|1754642|dbj|BAA14000.1| adenylate cyclase [Anabaena sp.]
          Length = 1155

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----------LLDEVGIEDEVMQ 51
            +     L            I H+  +PI  I   LE                      +
Sbjct: 502 REQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLESAVGTGEGLSYAQSAIALCNSRR 561

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108
           L+RL +    ++              D +  +  I +    +          ++      
Sbjct: 562 LLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTELDECPTV 621

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                +  K++ NL   A    P GG +++ +Q   +  I  ++  G      +      
Sbjct: 622 YIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVKEQIPHLFE 681

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +  +G+   + +   +    V  L   +  R+  + +       +  L
Sbjct: 682 RFRQAEGSENRSYEGSGLGLALVKELVELHGGRVTVDSVYGKGTTFTLWL 731


>gi|298376615|ref|ZP_06986570.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266493|gb|EFI08151.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 605

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            KN   +L    + A           + + H+I +P+ AI    EL+     ++E M   
Sbjct: 367 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 426

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99
            +  M+  + ++ +      +                 + +  +    ++          
Sbjct: 427 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 486

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            + +        S    +++ NL   A  +   G           ++  F ++  G    
Sbjct: 487 EKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYVRDTGIGID 546

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   +   +       L  +    +            S +L 
Sbjct: 547 KEKLKDVFDRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 602


>gi|260584311|ref|ZP_05852058.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC
           700633]
 gi|260157829|gb|EEW92898.1| sensory box histidine kinase VicK [Granulicatella elegans ATCC
           700633]
          Length = 616

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 71/224 (31%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ +I +  E L +   E++      +++I   +   +  +  +     
Sbjct: 382 FVSNVSHELRTPLTSIKSYTEALVDGAWENKEIAPGFLKVIETETDRMMRMITDLLNLSR 441

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
                             V  ++   ++    E +   + R+    T   + +  ++   
Sbjct: 442 MDQNRLGLEKEFINMNELVLHIVNRFEMVLQSEPYREKNYRILTDITQRDLWVELDQDKI 501

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++L N+   A    P GG++ + + ++  + I S+   G      +             
Sbjct: 502 TQVLDNIINNAIKYSPDGGRIIVRLMETHTDIIVSVSDEGLGIARKDIPHLFDRFYRVDK 561

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +       +   +  ++    I++        L 
Sbjct: 562 ARSRAMGGSGLGLAIAQEVVQLHGGKIWVNSIENKGSTFFVSLP 605


>gi|255013265|ref|ZP_05285391.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 622

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            KN   +L    + A           + + H+I +P+ AI    EL+     ++E M   
Sbjct: 384 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 443

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99
            +  M+  + ++ +      +                 + +  +    ++          
Sbjct: 444 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 503

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            + +        S    +++ NL   A  +   G           ++  F ++  G    
Sbjct: 504 EKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYVRDTGIGID 563

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   +   +       L  +    +            S +L 
Sbjct: 564 KEKLKDVFDRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 619


>gi|229030925|ref|ZP_04186944.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271]
 gi|228730419|gb|EEL81380.1| hypothetical protein bcere0028_29860 [Bacillus cereus AH1271]
          Length = 448

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L    +     +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQSEEMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  + S+  NG      E+  +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGM-EREEMDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELPK 448


>gi|170287881|ref|YP_001738119.1| histidine kinase [Thermotoga sp. RQ2]
 gi|281411517|ref|YP_003345596.1| histidine kinase [Thermotoga naphthophila RKU-10]
 gi|170175384|gb|ACB08436.1| histidine kinase [Thermotoga sp. RQ2]
 gi|281372620|gb|ADA66182.1| histidine kinase [Thermotoga naphthophila RKU-10]
          Length = 492

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 57/240 (23%), Gaps = 31/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMS 59
                +  M       + I H++ +P+ AI    E     L+E+ +      L  +   S
Sbjct: 245 ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETVYNSLEELDLSTLKEFLEVIIDQS 302

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSW 104
             +      L         SL    +   + +   +    +                V  
Sbjct: 303 NHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC 362

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161
             E         ++LLNL         +            +     +  ++ NG      
Sbjct: 363 PVEAYIDPTRIRQVLLNLLDNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGI-PD 421

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +I +            +    +       +   +  R+  E            + K
Sbjct: 422 HAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 481


>gi|150008033|ref|YP_001302776.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|149936457|gb|ABR43154.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
          Length = 622

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            KN   +L    + A           + + H+I +P+ AI    EL+     ++E M   
Sbjct: 384 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 443

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99
            +  M+  + ++ +      +                 + +  +    ++          
Sbjct: 444 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 503

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            + +        S    +++ NL   A  +   G           ++  F ++  G    
Sbjct: 504 EKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDDQLRFYVRDTGIGID 563

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   +   +       L  +    +            S +L 
Sbjct: 564 KEKLKDVFDRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 619


>gi|116620765|ref|YP_822921.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116223927|gb|ABJ82636.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 981

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 71/230 (30%), Gaps = 21/230 (9%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIR 54
               + +  L +  LL + + H++ +P+  I    ++L +   ED           +   
Sbjct: 739 EQRLVQADKLTSIGLLAAGVAHEVNTPLAVISTYAQMLAKQVAEDSQKSLILEKIAKQTF 798

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KID 110
            +S      L F R +    G+V+    + +   ++E  +        +           
Sbjct: 799 RASEIVNSLLNFSRTSTTSFGAVNVNKVVQETLSLLEHQLTKSGIQIKTEMDPSLPAVQG 858

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQ 166
            + +  ++ LNL + A  ++  GG    ++        +     +   G+    PE   +
Sbjct: 859 NAGKLQQVFLNLILNARDAMTAGGTTGGTIELRSWAEGSGARIEVSDTGHGI-APENLHR 917

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +        +       +  E+   +      D        L 
Sbjct: 918 IYDPFFTTKAARKGTGLGLSVTYGIIQEHGGSIEVFNRRDGGATFRVELP 967


>gi|298481290|ref|ZP_06999483.1| two-component system histidine kinase [Bacteroides sp. D22]
 gi|298272494|gb|EFI14062.1| two-component system histidine kinase [Bacteroides sp. D22]
          Length = 513

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 276 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 333

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  F        ++ +   + +        K +    
Sbjct: 334 NSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPISEIEIKSLLPDE 393

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                       +++ N    A                  + +     ++  G+      
Sbjct: 394 DVYINTDITRLKQVICNFINNARKFTQKGYIHFGYTLDNRNADSVQIFVEDTGSGIPQEC 453

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      ++      +       +    +  +  +         +  L 
Sbjct: 454 LNEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 506


>gi|237716428|ref|ZP_04546909.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262408028|ref|ZP_06084576.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|294645444|ref|ZP_06723147.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809529|ref|ZP_06768226.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229444075|gb|EEO49866.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262354836|gb|EEZ03928.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|292639213|gb|EFF57528.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294443269|gb|EFG12039.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 499

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  F        ++ +   + +        K +    
Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPISEIEIKSLLPDE 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                       +++ N    A                  + +     ++  G+      
Sbjct: 380 DVYINTDITRLKQVICNFINNARKFTQKGYIHFGYTLDNRNADSVQIFVEDTGSGIPQEC 439

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      ++      +       +    +  +  +         +  L 
Sbjct: 440 LNEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVKSEIGKGSCFTVTLP 492


>gi|229019900|ref|ZP_04176697.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273]
 gi|228741390|gb|EEL91593.1| hypothetical protein bcere0030_44000 [Bacillus cereus AH1273]
          Length = 484

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LRESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +            V    +  + ++ +S  G ++      
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEEGIEVHLQLHS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   L+K
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478


>gi|218259890|ref|ZP_03475422.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224855|gb|EEC97505.1| hypothetical protein PRABACTJOHN_01081 [Parabacteroides johnsonii
           DSM 18315]
          Length = 475

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 70/230 (30%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +     L  +    L  + + H+I +P+ AI     LL   D+   + + +++I+ ++ 
Sbjct: 250 QREKAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSTLLVDTDDPEEKKQFVEIIQKNNE 307

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +            +       VD      ++   +   +  +  + V+       
Sbjct: 308 LLLQLISDVLDLAKIESGIIELKLVEVDLRELCKELVVSMRIKVPAEVALCVAPDLPSYI 367

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  ++    +I+ N    A     +G  V            FS+   G+    PE    +
Sbjct: 368 MRCDKVRLTQIISNFINNAIKHTSKGTIVLGYEVRQDE-IEFSVTDTGDGM-SPEVQQHV 425

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D   +         +       +  +   ++  E  +         L +
Sbjct: 426 FDRFYKGNSFKQGTGLGLSICKSIIEQVGGKIGVESEEGKGSRFWFTLLR 475


>gi|206969233|ref|ZP_03230188.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cereus AH1134]
 gi|206736274|gb|EDZ53432.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cereus AH1134]
          Length = 801

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQSYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIKPNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|108757728|ref|YP_632419.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
           1622]
 gi|108461608|gb|ABF86793.1| sensor histidine kinase / response regulator [Myxococcus xanthus DK
           1622]
          Length = 368

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 73/234 (31%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
            + +      +  L A+  + + + H+I +P+ A    L +L+               E 
Sbjct: 133 KRELARRAQVTEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRLRRLPDGQQAPLLEP 192

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSW 104
           + L+R         L+             + + + ++ +     +     +    ++V+ 
Sbjct: 193 LLLVRDEIRRLDHILEDFLQFARPREFRPASVDVNEMLRRVVDLLSGQAASRKVSLEVTP 252

Query: 105 TGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
               +           ++L+NL + A  + P GG VT+S          ++  +G     
Sbjct: 253 REAPVPSVAGEEERLRQVLINLCLNALEATPAGGTVTLSAGHEGGRVWLTVDDSGPGV-P 311

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I +    +      +    V  +  ++   L  +            + 
Sbjct: 312 QEARDRIFEPFFTTKAQGSGLGLSIVHAIVTQHGGSLEVDTAPGGGARFILRMP 365


>gi|163847613|ref|YP_001635657.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525469|ref|YP_002569940.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chloroflexus sp. Y-400-fl]
 gi|163668902|gb|ABY35268.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449348|gb|ACM53614.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chloroflexus sp. Y-400-fl]
          Length = 666

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 62/251 (24%), Gaps = 39/251 (15%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
            + +   L  +  L A+  L + + H+I +P+ A+ +++ LL    +  E   L      
Sbjct: 414 RQRLARELAQAEKLAAIGRLATAMAHEINNPLQALSSTVHLLQHSDLSPERRDLYLTKAA 473

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106
                        L   R        VD    + D+       +       +    S   
Sbjct: 474 AELDGLIQRVQRILDISRPNLDGRRPVDLNQVVIDVIATYRQTLIARNIRYIGELTSTLP 533

Query: 107 EKIDLSRERAKILLNLFMVAHASLP-----------------------RGGKVTISVQDS 143
               +     ++   L   A  ++P                                  S
Sbjct: 534 WVTAVISHLKQVCQTLVQNAIEAMPEGGTLRIRTYLRPPDGEPDRASFWRAGGGSRQFPS 593

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
           +   +  +   G      E   +I +    +  D   I       +   +   L      
Sbjct: 594 EQAVVLEISDTGVGIAQEEVP-KIFEPFYSTRFDGLGIGLSLCYSIVDFHGGELWVRSQP 652

Query: 204 DHNVVLSALLE 214
           +       +L 
Sbjct: 653 EQGTTFRVILP 663


>gi|229131594|ref|ZP_04260476.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196]
 gi|228651820|gb|EEL07775.1| hypothetical protein bcere0014_5520 [Bacillus cereus BDRD-ST196]
          Length = 421

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 53/219 (24%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQL-------IRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++ L E    ++ ++            +          
Sbjct: 201 SEFLASVAHELRTPLTYVRGYADIALKENTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 260

Query: 68  RLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           ++           + L            V+     +        +       +   +++ 
Sbjct: 261 QMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLLVKLDEQRFEQVMA 320

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +        +K  G      +                  
Sbjct: 321 NILNNAYRHSKEHSHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDKARSRA 380

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419


>gi|158320426|ref|YP_001512933.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140625|gb|ABW18937.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 587

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 69/226 (30%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ +I+  +E L     ++  +    + +I + +      +  
Sbjct: 359 EKMRSDFVTNVSHELKTPLTSINGFVETLKSGAVEDRDVAMRFLDIIEIETDRLKRLIND 418

Query: 67  ---------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDLSRE 114
                    M   F       S   +  ++ +I    + +  +                 
Sbjct: 419 ILTLSEIESMETKFIVNEIFPSDTLMEVVDFIIPLADSKEIELFTDIDSALPSIYGNRDW 478

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             +I++NL   +    P GGKV ++     N  +  +K  G      +   ++ +     
Sbjct: 479 FKQIVINLLDNSIKYTPIGGKVELTAYTKDNNIVLHVKDTGIGIPKKDLP-RLFERFYRV 537

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +    V  +      ++  +  + +       + 
Sbjct: 538 DKARSRKVGGTGLGLAIVKYIVLSFNGKINVDSEEGNGTEFIVTIP 583


>gi|153826363|ref|ZP_01979030.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MZO-2]
 gi|149739841|gb|EDM54032.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MZO-2]
          Length = 597

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLASNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|153007202|ref|YP_001381527.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030775|gb|ABS28543.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 514

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 67/232 (28%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----L 55
           +  +    L +M+     L   I HD+ +P+ AI+N   LL     +   ++        
Sbjct: 272 LTFSDETALHAMEQARDDLVRMISHDLRTPLNAIYNQAHLLRRYPNDAARVEARAAAVLK 331

Query: 56  SSMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           S       ++ +                 VD    + ++ +     I VD+   V     
Sbjct: 332 SCERMSAMIQDLVEATLLEDGQLQISPEPVDLAAAVPELLERFHGAIDVDRVRLVVHPDL 391

Query: 108 KID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
                  +   +I++NL   A    P  G+V + +  +       +   G      +   
Sbjct: 392 PRALADPQRLERIVVNLLTNALKYSPPQGEVVLELAPAPEGVAIVVTDRGVGIAPEDVPH 451

Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +          +   +  Y    L   +  R+              +L 
Sbjct: 452 VFDRFFRARGARQPEGLGLGLYITRHLVQAHGGRIEVSSRLGQGSTFRVVLP 503


>gi|329962495|ref|ZP_08300495.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
 gi|328530051|gb|EGF56939.1| PAS domain S-box protein [Bacteroides fluxus YIT 12057]
          Length = 939

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     LL E    +E  Q I +   +  
Sbjct: 712 AKEKAEAADRLKSAFL--ANMSHEIRTPLNAIVGFSSLLGETENVEERKQYIAIVEENND 769

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                        ++D  +   DI + +   +     +       +  
Sbjct: 770 LLLQLISDILDLSKIEAGTFDFTKRALDVNLLCEDIVRTMRMKVKPGVELLFDSHLPECQ 829

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    ++L N    A      G          +N   F +   G      ++    
Sbjct: 830 IVSDRNRLNQVLANFVNNAVKFTSAGSIRVGYEPLDENRLRFYVADTGIGIEPEKQVQVF 889

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 ++ +    +       +  +    +  +            L 
Sbjct: 890 DRFVKLDTFVPGTGLGLSISKSIIEQLGGTIGVDSKVGEGSCFWFTLP 937


>gi|315641356|ref|ZP_07896432.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952]
 gi|315482929|gb|EFU73449.1| sensor histidine kinase VicK [Enterococcus italicus DSM 15952]
          Length = 613

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 69/221 (31%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ ++H+ LE L +    DE          +             L   R
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWRDEEIAPDFLKVTLDETDRMIRMINDLLNLSR 442

Query: 69  LAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
           +  G            + +  + +   ++         ++  +T   + +  +     ++
Sbjct: 443 MDGGNAQLQKEYVNFNELVHFVLNRFDMMVTGKEKRYVIRRDFTQRDLWVEVDADRMIQV 502

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173
           + N+   A    P GG +T+S+ ++ N  + S++  G      +                
Sbjct: 503 IDNIMNNAIKYSPDGGVITVSLSETHNHILLSIRDQGMGIPKVDLAKIFTRFYRVDKARA 562

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +   +K  +  E  +++       L 
Sbjct: 563 RKQGGTGLGLAISREVIKAHKGSIWAESKENYGSTFYISLP 603


>gi|293371900|ref|ZP_06618304.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292633146|gb|EFF51723.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 400

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI    +L+        +++  ++I  +S   +     
Sbjct: 178 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 237

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      ++        +D  + L                  V             
Sbjct: 238 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFWHKTQNGVKLILDDVDTDMYTSGDWNRI 297

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +I+ NL   A    P+G  +    ++ ++   F +K +G         T          
Sbjct: 298 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD 356

Query: 176 I-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +L  +   R+     +         L 
Sbjct: 357 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 396


>gi|159899975|ref|YP_001546222.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893014|gb|ABX06094.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 958

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 77/228 (33%), Gaps = 23/228 (10%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAI 61
            L  +   +   S + HD+ SP+ AI    +L+ +        ++ + +Q +  ++ +  
Sbjct: 730 ELDQIK--SRFVSMVSHDLKSPLTAIQGYAQLVADGHMGTVNEMQRDALQAVVRNTGAMT 787

Query: 62  IRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +           ++   T     L  + D  ++      +  + ++  +   +  
Sbjct: 788 ALISDLLDLGKIEAGIGISPQETDLAVVLREVIDELKLRAKMGQISVQPEIPPSLPLVAD 847

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIV 168
                ++  N+   A    P GG+V I   +   +    ++ +G        P  F +  
Sbjct: 848 PSRMRQVFTNILSNAIKYTPSGGQVQIRANNGDAKMHVQIQDSGLGIPEDSLPHIFERFY 907

Query: 169 D--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +++S I+   +       +  E+   +  + +       +  L 
Sbjct: 908 RVKRDIDSPIEGTGLGLAITKSIVDEHGGTIEVQSVIGEGTTFNVYLP 955


>gi|324991493|gb|EGC23426.1| sensor histidine kinase VicK [Streptococcus sanguinis SK353]
          Length = 449

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 69/222 (31%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + + V        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALSEPVAPDFVKVSLNETNRMMRMVTDLLSLSR 270

Query: 69  LAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
           +    +                L   +++          +   +    I +  +     +
Sbjct: 271 IDNETSHLEVELTNFTAFITFILNRFDKIKNQDETKKYEIIRDYPITPILVEIDTNKLTQ 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
           ++ N+   A    P GG +T+S++ +  + I S+   G      +    F +    +   
Sbjct: 331 VIDNIMNNAIKYSPDGGTITVSIKTTDEQLILSIADEGLGIPKQDLPKIFDRFYRVDKAR 390

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +  +++  +  +         + +L 
Sbjct: 391 SRAQGGTGLGLAIAKEIIKQHQGFIWAKSEYGVGSTFTIVLP 432


>gi|324328565|gb|ADY23825.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 484

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|304318073|ref|YP_003853218.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779575|gb|ADL70134.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 565

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + H++ +P+  I +  E L     +    +  + +I          +K + L    
Sbjct: 348 FVANVSHELRTPLTTIKSYTETLLNDGVDEEYRNRFLSIIDKEVDRMTRLVKDLLLLSKM 407

Query: 74  TGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
             +                 L  I+   +                      +  ++LLN+
Sbjct: 408 DSNGKLNLEETNLNEFIENILYKIKIEAQKKNQKLTFCAGEEKRNINIDRDKMEQVLLNV 467

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
              A      GG V +  +   +    ++  NG      +   +I +            +
Sbjct: 468 VSNAIKYTNLGGYVRVFTKYDDDYAYITISDNGIGIPKKDLP-RIFERFYRVDKGRSREL 526

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E       ++   L+
Sbjct: 527 GGTGLGLAIAKEIVTAHGGEINIESEVGIGTIVYIKLK 564


>gi|289432510|ref|YP_003462383.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
 gi|288946230|gb|ADC73927.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. GT]
          Length = 852

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 17/226 (7%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62
              + +  L +L  L + + H++ +P+ ++    EL+ E  + +++ Q I++ S  A   
Sbjct: 622 AQLMITDRLASLGELSAGLAHELNNPLTSVLGFSELIQEKILPEDLRQDIQIISQEAQRA 681

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER 115
                  L F R        VD    +  +  +        + ++  +      ++  + 
Sbjct: 682 AEIIRNLLTFARRHEPSKDWVDMNQIIHKVLAICNYGQKVHNIQLITNLDPNLPEIKADY 741

Query: 116 AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++   L  +   +     +        IS +   +    S++ +G              
Sbjct: 742 FQMQQVLLNIVINAEYFMTQSHGEGTIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDP 801

Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     +       +  ++  +L  E  +         + 
Sbjct: 802 FFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIEIP 847


>gi|283787324|ref|YP_003367189.1| two-component system sensor kinase [Citrobacter rodentium ICC168]
 gi|282950778|emb|CBG90454.1| two-component system sensor kinase [Citrobacter rodentium ICC168]
          Length = 467

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSM 58
                    LVAL  L + + H+I +P+ +I        E     G   ++ Q++   + 
Sbjct: 234 QDEMNRKEKLVALGHLAAGVAHEIRNPLSSIKGLARYFAERAPAEGEAHQLAQVMAKEAD 293

Query: 59  SAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKID 110
                    L+ ++ A      VD    +    Q++           K    +       
Sbjct: 294 RLNRVVSELLELVKPARLSLQPVDLNALIAHSLQLVSQDARQREIELKFTPSAGLPLIQA 353

Query: 111 LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                 ++LLNL++ A  ++         +     N     +  +G      E+   I  
Sbjct: 354 DPDRLTQVLLNLYLNAIHAIDSQGTISVTASASGDNRVKIVVADSGKGI-AAEQLEAIFT 412

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +    V  +  ++   +  +       V +  L 
Sbjct: 413 PYFTTKAEGTGLGLAVVHNIVEQHGGTIQADSPAGRGAVFTLWLP 457


>gi|257094698|ref|YP_003168339.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257047222|gb|ACV36410.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 918

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLS 56
           +     L  +D +   + S + H++ +P+ +I    ELL +            + LI   
Sbjct: 671 QEANERLQELDRVKDDIMSSVTHELRTPLTSIRAFSELLRDDPKMHLADRERFLGLIVSE 730

Query: 57  SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGE 107
           +      +             A      +D    +              D  V +     
Sbjct: 731 AERLSRLINQTLDLAKIESGRADWNGCELDLKEVVEQSLAATSQLFREKDAHVDLDLPDN 790

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEK 163
              +  +R    +++LNL   A   L +G            +    S+  NG   R  ++
Sbjct: 791 LPLILADRDRLIQVMLNLLSNAAKFLVQGAGRVSVKLRVLADALEVSVSDNGPGIRPEDQ 850

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + V   + +      +       +      RL  E +          L 
Sbjct: 851 ELIFEKFRQVGDTMTAKPAGTGLGLPISRRIVEHFGGRLWVESVPGEGATFRFTLP 906


>gi|291614244|ref|YP_003524401.1| CBS sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291584356|gb|ADE12014.1| CBS sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 442

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/272 (11%), Positives = 75/272 (27%), Gaps = 59/272 (21%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL--------------------- 37
           +  +    + S  + +L  + + I H+I +P+G + N++                     
Sbjct: 155 LKSSQLALVQSEKMASLGQMVAGIAHEINTPLGYVQNNVAIGQALFQQIQTLIAGYEGLL 214

Query: 38  -ELLDEVGIEDEVMQLIRLSSMSAII------------------------------RLKF 66
            +LLDE   E+++   ++                                         F
Sbjct: 215 DDLLDEQATEEQIAVQMQQIGELRNDMNAREMLGEMHGLMGDSLYGIAQISELVLNLKNF 274

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKILLNLFM 124
            R+    T +V     +     +  + +     V               +  ++ LNLF 
Sbjct: 275 SRMDAAATEAVSLNDCIESALNIGRNVLKDKVEVVRELGDLPRITCAPSQLNQVFLNLFT 334

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQ 182
            A  ++   GK+ I           ++  +G      E  T+I D    +    +   + 
Sbjct: 335 NAAQAMEGFGKLHIRTWSEDGMVHVNVADSGRGI-PQEILTRIFDPFFTTKPVGEGTGLG 393

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  ++   +  +            L 
Sbjct: 394 LAITHQIIQKHGGDITVDSRVGEGTCFHISLP 425


>gi|228929722|ref|ZP_04092739.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228829901|gb|EEM75521.1| hypothetical protein bthur0010_44060 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 484

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|218905899|ref|YP_002453733.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218534871|gb|ACK87269.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 484

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|153805851|ref|ZP_01958519.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
 gi|149130528|gb|EDM21734.1| hypothetical protein BACCAC_00090 [Bacteroides caccae ATCC 43185]
          Length = 396

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63
            S  L +   + + H+I +P+ AI    +L+ +    +E  Q   +   ++ I       
Sbjct: 174 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLVIDAECTNEKEQYAEIIERNSEILLNLFND 233

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +         +D  + L                  V             
Sbjct: 234 ILDLSSLEADSLSFNIRPIKLIDICLQLEQQFCYKVKNGTKLILDDVDTELYVSGDWNRI 293

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-VES 174
            +I+ NL   A    P+G  +    ++ ++   F +K +G         T       +  
Sbjct: 294 IQIISNLLSNAAKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAERVATIFQRFGKIND 352

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +L  +   R+     +         L 
Sbjct: 353 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGKGSRFYFTLP 392


>gi|17229460|ref|NP_486008.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131058|dbj|BAB73667.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 759

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 75/241 (31%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +   F    ++ +  L S I HD+ + +  I    +LL     D       +++++ +++
Sbjct: 381 EAQLFRTQRLESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINA 440

Query: 58  MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                 +K +            ++     + ++ +++++       V      +   +S 
Sbjct: 441 KRGADLVKQVLSFARGVEGKRITLQLKHLIVEVVKILKETFPKSIEVYTDIPNDLWMVSG 500

Query: 114 ER---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155
           +     ++L+NL + A  ++P GG                            + ++   G
Sbjct: 501 DSTQLHQVLMNLCVNARDAMPDGGTLTISAENLLIDENYARMNLEAKQGPYIMITVSDTG 560

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I +    +        +    V+ +   +   +     +         L
Sbjct: 561 VGI-SPENLDRIFEPFFTTKAVGQGTGLGLSTVLGIVKSHGGFVNVYSEEGRGTTFRVYL 619

Query: 214 E 214
            
Sbjct: 620 P 620


>gi|313672164|ref|YP_004050275.1| histidine kinase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938920|gb|ADR18112.1| histidine kinase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 672

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 73/245 (29%), Gaps = 34/245 (13%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVMQLIRLSS 57
           +       +  + AL  L   + HDI + + A+ N+L   E++D       +++++  + 
Sbjct: 286 EKDNMIFHAQKMDALGVLAGGVAHDINNVLSAMKNALTAIEMMDYPDEIKPMLKILEKAI 345

Query: 58  MSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                 ++    F R       SVD    +  +  +++        ++    G+  ++  
Sbjct: 346 YRGSNIVRQILLFSRKQDVQYKSVDIAKVIDGVVGILKSTADKSIEIKTEIDGDSYNVFG 405

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS----------------------VQDSKNENIFSL 151
           +  ++   +  +   +      +                             KN  I S+
Sbjct: 406 DENQLEQAILNICINACHAMTIMRKDGKKGGLLTIKLGHYKNQRNNILNCVDKNYIIISI 465

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G      E   +I +         +   +    V  +  ++   +     +      
Sbjct: 466 SDTGVGIPRDEIP-RIFEPFYTKKKINEGTGLGLAIVHRIVKDHGGDIYVYSEEGKGTTF 524

Query: 210 SALLE 214
           + LL 
Sbjct: 525 NILLP 529


>gi|167753652|ref|ZP_02425779.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
 gi|167658277|gb|EDS02407.1| hypothetical protein ALIPUT_01932 [Alistipes putredinis DSM 17216]
          Length = 1057

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 58/227 (25%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AKN       +    L  + + H+I +P+ AI     L+   ++     E + +++ ++ 
Sbjct: 688 AKNKAEVSDRLKSAFL--ANMSHEIRTPLNAIVGFSNLIAETEDPDERREYVAIVQENNE 745

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------TG 106
             +  +  +               +      +   I     ++V                
Sbjct: 746 LLLKLISDILDLSKIEAGTLEFNDVEFDVNQMCQEIVRSLSLKVLDKPVELRFGDHLPEC 805

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +       ++L+N    A      G        D      F ++  G      E+ + 
Sbjct: 806 RLVGDKTRITQVLINFINNALKFTREGSVTLGYRCDDGMMLTFYVEDTGTGIPEQEQESV 865

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   S +    +       +  +   R+               
Sbjct: 866 FERFVKLNSFVQGTGLGLAISKSIVEQMGGRIGLNSEPGKGSCFWFT 912


>gi|94264642|ref|ZP_01288425.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454937|gb|EAT05178.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 501

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 58/233 (24%), Gaps = 21/233 (9%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
            + +   L     L  L  + + + H+I +P+G I ++  +L            +L  + 
Sbjct: 251 RRRLEQQLHQHEKLATLGKMVASVSHEIKNPLGIIRSTAAILGKRLQKEAPGNERLAGII 310

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEK 108
                     +R    +            +          +  +         +    E 
Sbjct: 311 VEETSRLDGIVREFLDFARPQSPNFATNSLSEVVEQALGFITPELEKSGIETALELDREL 370

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-------FSLKINGNLARFP 161
              S +R ++   L  +   +     +       S+             +  +G     P
Sbjct: 371 APFSFDREQLYRALLNILFNAAQAMPEGGKLRVRSRQVLKDEVAVAVLEITDSGVGI-DP 429

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+  ++             +    V  +   ++  +              +L 
Sbjct: 430 EQRERVFTPFYTDKHRGTGLGLAIVKNIIDNHQGIIEVASRPGQGTTFRIILP 482


>gi|150018636|ref|YP_001310890.1| sensory histidine kinase AtoS [Clostridium beijerinckii NCIMB 8052]
 gi|149905101|gb|ABR35934.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Clostridium beijerinckii NCIMB 8052]
          Length = 607

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 14/220 (6%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMS 59
            L  +  V  L + + H+I +P+ AI  S+++L +   +D         V++ +   +  
Sbjct: 381 RLDRLAAVGELAAGVAHEIRNPLSAISGSVQILVDELPKDNSTRIFGNVVLKEVDRLNGV 440

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTGEKIDLSRERAKI 118
               L F + +  Y  S++    + +   ++   I  +  V +  +      +S +   I
Sbjct: 441 IEDLLYFAKPSKHYVTSININELVENSLFLLLPSIKKEIVVLETHFDQSIETISVDAQLI 500

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKINGNLARFPEKFTQIVDGNVES 174
              L  +   +     +    +  +    I      ++ NG      E   +I D    +
Sbjct: 501 KQVLVNLLLNATQAMPQENGKITVTTQRVIKGIEIIIEDNGKGI-DQESLPRIFDPFFTT 559

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   ++  +  E I       +  L 
Sbjct: 560 KDTGTGLGLAVSNKIIEIHQGYIRAESIVGIGSTFTLYLP 599


>gi|229521845|ref|ZP_04411262.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae TM 11079-80]
 gi|229340770|gb|EEO05775.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae TM 11079-80]
          Length = 597

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERTEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|91772161|ref|YP_564853.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711176|gb|ABE51103.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 763

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 60/245 (24%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDL--------VALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            K     +    L         +   + + H++ +P+ +I    ELL E     I ++  
Sbjct: 509 RKKAEDMVIQAKLDAEATNRTKSEFLANMSHELRTPLNSIIGFSELLLEKTIGDINNKQE 568

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDK 98
           + I          L  +      +      + L   E             +    I    
Sbjct: 569 RYISNILTGGQHLLSLINEILDISKVESGKMELHYDEFAISSMISDIVILLNPLAITNRI 628

Query: 99  RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            +          ++ ++    +IL NL   A       G ++I            +K NG
Sbjct: 629 EIITDIDKRLSLINADKIKIKQILYNLLSNAIKFTNENGTISIEAIFDDKLMQICIKDNG 688

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 E   ++                   +    V      +   +  +         
Sbjct: 689 IGI-EKENIEKLFQPFQQIDSAASRKYQGTGLGLALVKNFVEMHGGNIWVDSEMGKGSAF 747

Query: 210 SALLE 214
           +  + 
Sbjct: 748 TFTIP 752


>gi|15643616|ref|NP_228662.1| sensor histidine kinase [Thermotoga maritima MSB8]
 gi|4981387|gb|AAD35935.1|AE001752_2 sensor histidine kinase [Thermotoga maritima MSB8]
          Length = 489

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 31/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNS-------------------LELLDEVG 44
                +  M       + I H++ +P+ AI                      LE++ +  
Sbjct: 242 ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQS 299

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              E +    L       +   +         +         E      + V     V  
Sbjct: 300 NHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC 359

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161
             E         ++LLNL         +            +     +  ++ NG      
Sbjct: 360 PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGI-PD 418

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +I +            +    +       +   +  R+  E            + K
Sbjct: 419 HAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 478


>gi|83754490|pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
           Histidine Kinase Protein
          Length = 258

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 31/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNS-------------------LELLDEVG 44
                +  M       + I H++ +P+ AI                      LE++ +  
Sbjct: 11  ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQS 68

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              E +    L       +   +         +         E      + V     V  
Sbjct: 69  NHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC 128

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161
             E         ++LLNL         +            +     +  ++ NG      
Sbjct: 129 PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGI-PD 187

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +I +            +    +       +   +  R+  E            + K
Sbjct: 188 HAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 247


>gi|163849409|ref|YP_001637453.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|163670698|gb|ABY37064.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
          Length = 524

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 65/215 (30%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ A+  +LE+LD     +  +  EV+  +R  +   I  +  + L   
Sbjct: 292 FVADVSHELRTPLTAMQGNLEILDRGTCPDPALLKEVIGDMRRETARLIRMVNDLLLLAQ 351

Query: 73  YTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
               V             L    ++      V  R+                + LLNL +
Sbjct: 352 SETHVVLRHEPVELDTLLLEVFRELRPLAGQVRLRIGAEDQILVYGDRDRIKQALLNLGV 411

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTIDSH 179
            A    P GG V +S++  +     S+   G           F +      +        
Sbjct: 412 NALQYTPPGGLVILSLERYEQFACLSVADTGVGISEEARAHIFERFYRVDRSRSRHSGGA 471

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +A  +   +            +  L 
Sbjct: 472 GLGLSIVKWVAEAHGGYVTVASEVGRGSTFAIYLP 506


>gi|309789691|ref|ZP_07684271.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228177|gb|EFO81825.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 673

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 68/247 (27%), Gaps = 39/247 (15%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--- 60
              L +  L AL  L + + H+I +P+ AI+N++ LL    + DE  Q     +      
Sbjct: 425 NQLLQTEKLAALGRLSASMAHEINNPLQAINNAVHLLLNRSLTDEKRQRYLEMTREEIDH 484

Query: 61  -----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS--- 112
                   L F R +      VD +  L  +  +    +   +   +      +      
Sbjct: 485 LISIVQRILDFHRPSREGMRPVDLVEILDGVLSLTSTQLHTQQIELIREIDPDLPHVLAV 544

Query: 113 -RERAKILLNLFMVAHASLP------------------------RGGKVTISVQDSKNEN 147
                ++ L+L   A  ++                            +  I+        
Sbjct: 545 GSHMRQVCLSLIFNAIEAMNAGGELRVRAYLVTEQEDPHTDLFTIAVERRITPPMCGPMV 604

Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           +  +   G      +   +I +    + I    +       +  ++   +    I     
Sbjct: 605 VVEISDTGPGIPTQDLH-KIFEPFYTTRIKGTGLSLAMTYNIIEQHHGEMAVRSIPGQGA 663

Query: 208 VLSALLE 214
                L 
Sbjct: 664 TFRIRLP 670


>gi|269837966|ref|YP_003320194.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
 gi|269787229|gb|ACZ39372.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
          Length = 366

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIR 63
                   L + L + + H++ +P+ +I       LL++   ++E  +   L+  +    
Sbjct: 125 RLASQGAHLRSDLAAILSHEMRTPLASIKGYASALLLEDAYWDEETRREFLLAIDAETDH 184

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---------- 113
           L  +         +++     + E ++   +      +++   ++               
Sbjct: 185 LTQLIEDVLDASIIEAGALRIEPEPILLPHMVRRAIDKLALRTDRHRFVLSFPPDFPAVM 244

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++L NL   A    P+GG + +S + + +E + S+   G              
Sbjct: 245 ADALRIDQVLSNLLDNAVKYSPQGGLIVVSGRVAGDEVVVSVADQGIGIAPEHLNKLFER 304

Query: 170 GNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    +       +   +  R+  E       V S  L 
Sbjct: 305 YFRASTNGRRVAGTGLGLPISDAIIRAHGGRIWAESTVGQGTVFSFTLP 353


>gi|228942607|ref|ZP_04105139.1| hypothetical protein bthur0008_52340 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228975537|ref|ZP_04136089.1| hypothetical protein bthur0003_52810 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982173|ref|ZP_04142462.1| hypothetical protein bthur0002_53270 [Bacillus thuringiensis Bt407]
 gi|228777525|gb|EEM25803.1| hypothetical protein bthur0002_53270 [Bacillus thuringiensis Bt407]
 gi|228784147|gb|EEM32174.1| hypothetical protein bthur0003_52810 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228817033|gb|EEM63126.1| hypothetical protein bthur0008_52340 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326943256|gb|AEA19152.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 672

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +   +   + +   
Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSLIRDIIPLIKIDTYNQNKYIQFDTNDIPKLLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKVLTISTYKEGQNCVVLAVQDQGQGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKHNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|297565539|ref|YP_003684511.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296849988|gb|ADH63003.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 442

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 66/228 (28%), Gaps = 22/228 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
               +     A L   + H++ +P+ ++   LE L     E   ++  + ++      + 
Sbjct: 210 AVREARERERAFLA-EVSHELRTPLTSLTGYLERLSRNPAEQSALEGAKRTTEHLTRMVG 268

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
            +               +  + +V++  +     V +    E +++  +     ++  NL
Sbjct: 269 DLLALARGEAERSVNAHIVSLGEVLKQVVQEYPGVSLRLPKEDLEVLGDPDRLMQLARNL 328

Query: 123 FMVAHASLPRGGKVTISVQ----------------DSKNENIFSLKINGNLARFPEKFTQ 166
              A  +  R   V +                     +   +F+++ +G     PE   +
Sbjct: 329 ISNAVRAAGRPQGVRVMAWRENLDPFETLPPTQGTPPEGWAVFAVRDDGPGI-DPEILPR 387

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +             +       +A  +  ++            +  L 
Sbjct: 388 LFQRFARGPQGGTGLGLAIARQIAMAHGGKIEVTSKPGD-TRFTVYLP 434


>gi|108762623|ref|YP_634972.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108466503|gb|ABF91688.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 842

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
            K +   L ++  + A+  L + + H+I +P+  +  +LE  +    +  +         
Sbjct: 436 TKELQARLVAAERVAAVGTLAAGVGHEINNPLAYLVLNLEAAERGLSQGGMSGMRDAMAN 495

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++      +       F R      G VD    +    ++I   +    R+   + 
Sbjct: 496 MRGALEGAERIRLIVRDLQVFSRQGNQDPGLVDLNALVPPAVRIISHALRHRARLVEEFG 555

Query: 106 GEKIDL--SRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLA 158
                        ++LLNL + A  ++P G      V+              +  +G   
Sbjct: 556 PVPRVSGSEARLGQVLLNLLVNAMQAIPEGNPSMNEVRVRTSTDASGRARVDVVDSGAGI 615

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I +    +    +   +       +   +   L          V S LL 
Sbjct: 616 -PAHVLPRIFEAFYTTKSSGEGTGLGLAICQQIVRAHGGELEVRSEPGRGSVFSVLLP 672


>gi|116749808|ref|YP_846495.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
            MPOB]
 gi|116698872|gb|ABK18060.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
            MPOB]
          Length = 1509

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 29/240 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59
            ++       ++ +  L   I HD  + + AI    E+     E       +  +  +   
Sbjct: 1128 ESRLLQAQKIEAIGTLAGGIAHDFNNILAAIIGYTEMTRQTVEHPDPRRYLDQVLKACDR 1187

Query: 60   AIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LS 112
            A   +     F R A      VD    + +  + +   ++   +++              
Sbjct: 1188 ARNLVGQILAFSRKAERDIRPVDVRSIVKEALKFLRATLSSTIKIRQKIAPGTHAVLADP 1247

Query: 113  RERAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKINGN 156
             +  ++L+NL   A  ++                        +   S      ++   G 
Sbjct: 1248 TQIHQVLINLCTNAAHAMREKGGVLQVDLENIDVRPGSTAFPADLPSGPYLKLTISDTGT 1307

Query: 157  LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +I D    +    +   +    V  +  E    +          V S  L 
Sbjct: 1308 GI-DHAILHRIFDPFFTTKRPGEGTGLGLSVVYGIVKECGGTVTVSSEPGAGSVFSVWLP 1366


>gi|291615089|ref|YP_003525246.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585201|gb|ADE12859.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 541

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 61/226 (26%), Gaps = 16/226 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M +        + L AL  L + I H++ +P+ +I  + ELL E   +    +L ++   
Sbjct: 311 MQRAQEQA-QQVKLAALGRLTANIAHEVRNPLSSISYATELLKEQRHDPAQARLFQIILD 369

Query: 59  SAIIRLKFMRLAFGYTGSVDSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +     + ++                        L +     E        +QV  +   
Sbjct: 370 NTSRLNRIVQDVMLVNRRDRVQAESLELATRLEELIESVCQAEKVSRSVFELQVDPSCRV 429

Query: 109 IDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                   ++L NL   A     +        +        +  +  +G      E   +
Sbjct: 430 RFDRGHFEQVLWNLCRNALRYSQKRVGSVRLRAFTAEDGNAVLEVSDDGGGV-SGEASQK 488

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           + +    +      +  Y    L   N   +      D        
Sbjct: 489 LFEPFFTTDAGGTGLGLYIARELCDANGAMIEYRRALDGGACFRIT 534


>gi|92114785|ref|YP_574713.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91797875|gb|ABE60014.1| multi-sensor hybrid histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 737

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           K+      S +   +   + + H+I +P+  +    ELL E  ++    Q +     S  
Sbjct: 224 KDTAREAESANQAKSDFLATVSHEIRTPLNGVLGMTELLRERELDGTSHQYVETIHESGS 283

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L                + +          +  L  + +     + +   V  S    
Sbjct: 284 QLLTLISDLLDFSKIEAGHLEIERETFSLQALIDSLLRLLEPRAQHVELISDVAPSVPSH 343

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +  +    ++LLNL   A     RG    I      +   F ++  G      +   ++
Sbjct: 344 SLGDAGRLRQVLLNLLSNALKFTSRGSVTLIVKPMRGDWMHFEVRDTGCGIEDAD-PQRL 402

Query: 168 VDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +            +       L    + R+               L 
Sbjct: 403 FQPFYQGASAVHYQGGTGLGLAISKRLVEAMQGRIGVSSPAGEGSRFWFELP 454


>gi|260062917|ref|YP_003195997.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region [Robiginitalea
           biformata HTCC2501]
 gi|88784485|gb|EAR15655.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region [Robiginitalea
           biformata HTCC2501]
          Length = 576

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 24/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------LK 65
           +L + + H+I +P+  I    +LL E  + +   + +     +A                
Sbjct: 72  MLIATVSHEIRTPLSGIIGFTDLLSESPLGEREAEYVGAIRSAAHGLLEIVNELREFSTI 131

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKILL 120
                   +   +    LG++  + +  I  D       +        +    + ++IL+
Sbjct: 132 ESGTWKATSIPFNPKQVLGEVGYLCKTLIVRDNVAFRTEIARDLPDLLLGDPSKLSQILM 191

Query: 121 NLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
           NL   A           ++    +         ++  G   +  +    F     G    
Sbjct: 192 NLLGNAIKFTASGHITLRMRCEWRKRTCTLHGEVEDTGPGIQPSDLGLIFNPFHQGGQTG 251

Query: 175 TIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +  E         S  L 
Sbjct: 252 ETQGIGTGLGLSIVKKIIERQGGAIWAESEPGSGSRFSFRLP 293


>gi|330005099|ref|ZP_08305109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Klebsiella sp. MS 92-3]
 gi|328536432|gb|EGF62785.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Klebsiella sp. MS 92-3]
          Length = 464

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 76/232 (32%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQ 51
            ++    L +      L+AL  L + + H+I +P+ +I        E     G   ++ Q
Sbjct: 223 RRSRKQLLEAMARKEKLLALGHLAAGVAHEIRNPLSSIKGLAKYFAERTSPGGESHQLAQ 282

Query: 52  LIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
           ++   +          L+ +R A     +VD    +    Q++           +     
Sbjct: 283 VMAKEADRLNRVVSELLELVRPAHLNYQTVDINALIRHSLQLVSQDAQSRGIALQFTPRP 342

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                        ++LLNL++ A  ++ R G + ++  ++  +     +  +G      E
Sbjct: 343 ELTTISADPDRLNQVLLNLYLNAMQAIGRDGVIRVTASEADRQRVKIVVTDSGKGMSDEE 402

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I      +  D   +    V  +  ++   +  E       + +  L 
Sbjct: 403 L-QAIFTPYFTTKADGTGLGLAVVQNIIEQHGGTIRAESQPGAGAIFTLWLP 453


>gi|251836869|pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-Response Regulator Complex
           Reveals Insights Into Two-Component Signaling And A
           Novel Cis-Autophosphorylation Mechanism
 gi|251836871|pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-Response Regulator Complex
           Reveals Insights Into Two-Component Signaling And A
           Novel Cis-Autophosphorylation Mechanism
          Length = 258

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 53/240 (22%), Gaps = 31/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNS-------------------LELLDEVG 44
                +  M       + I H++ +P+ AI                      LE++ +  
Sbjct: 11  ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQS 68

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              E +    L       +   +         +         E      + V     V  
Sbjct: 69  NHLENLLNELLDFSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPC 128

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161
             E         ++LLNL         +            +     +  ++ NG      
Sbjct: 129 PVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGI-PD 187

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +I +            +    +       +   +  R+  E            + K
Sbjct: 188 HAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPK 247


>gi|224368296|ref|YP_002602459.1| putative response regulator protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223691012|gb|ACN14295.1| putative response regulator protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 408

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 18/224 (8%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
                +  + +L  + + I H+I +P+  I      L    + G   E +++I   +   
Sbjct: 177 QLASKADRMSSLGRMAAGIAHEINNPLTGILLYSSNLSKKADPGPFKEGLEIIMHETQRC 236

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRER 115
              ++ +               +  + +     +  +      +V   +  +    S + 
Sbjct: 237 KKIIQGLLDFSREKKPQKIQANINKVIEKSLALMDNELFIRRIKVVRDFDYDIKSFSLDP 296

Query: 116 AKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++   L  +   ++          +     +     +  ++ NG      +   +I + 
Sbjct: 297 DQLEQVLVNLLFNAVHAVEEKGLITIRSKNSEDGKSIVVEVEDNGCGIH-KDNLKKIFEP 355

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   ++ R+          +++  L 
Sbjct: 356 FYTTRSSGTGLGLSVSYGIIRNHQGRIKILSEPGVGTLITLNLP 399


>gi|162452262|ref|YP_001614629.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161162844|emb|CAN94149.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 2003

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 30/240 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
            AK      S     +   S + H++ +P+  I    ++L+          E +++I+ SS
Sbjct: 1519 AKEAAERASQAK--SDFLSSMSHELRTPLNGIMGHAQILERTPDVPPAWREGLRVIQKSS 1576

Query: 58   MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108
               +  +  +                       +  +  +                    
Sbjct: 1577 EHLLSLINDLLHLAKIEAGKMDSVLTEFRLPALVRTVVDLCRVRAEAKGITFSDELRGPA 1636

Query: 109  ----IDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLAR 159
                    +   ++LLNL   A     R       +V      +     F ++  G    
Sbjct: 1637 LQAVCADEKRLMQVLLNLLGNAIKFTERGGVSLHVEVLEETVPAGRMVRFRIEDTGPGI- 1695

Query: 160  FPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE  ++I +         +  +   +       L  +    +  +       V +  L 
Sbjct: 1696 APEHLSRIFEPFEQVGEQSAKSEGTGLGLAITKKLVQQMGGAIEVQSEVGEGSVFAVTLP 1755


>gi|138895266|ref|YP_001125719.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266779|gb|ABO66974.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
          Length = 456

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 52/215 (24%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFMRLAF 71
           + I H++ +P+  +    ++     +E+E                        +  ++  
Sbjct: 240 ASISHELRTPLTYVKGYADIARRPNMEEEERNRYLSIIYEEAEHMQKLVKDLFELAKMDQ 299

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFM 124
                      L    + + D +    +        Q           +   ++++NL  
Sbjct: 300 HSFQIHKEPTNLCSFLKKLHDKMHPAFQAKKMSLVYQCEKNITVHIDQKRFEQVMINLLD 359

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
            A     +G  V+I  +  K+  +  +   G      +                 T    
Sbjct: 360 NALKYADQGSTVSIDARAEKDNIVMIVSDEGRGIPEEDLPHIFERFYRVDKSRSRTSGGT 419

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       +   +   +           +   L 
Sbjct: 420 GLGLAIAKEIVEAHGGSIYAASEYGKGTNMIITLP 454


>gi|108760501|ref|YP_629607.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108464381|gb|ABF89566.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 509

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 25/233 (10%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS 59
               LS M       S + H++ +P+ +I   +E L      +     EV+ L+   +  
Sbjct: 275 REAQLSRMK--TDFVSLVSHELRTPLTSIRMFIETLALGRLKDPAQTQEVLTLLMRETER 332

Query: 60  AIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
             I ++ +            Y   +  +  L +          ++  V ++        +
Sbjct: 333 LSIFVERVLDWARIEGGRKVYQREIVPVSELVNAAVEAFRTQRMEDGVDLTVEVSDGLPA 392

Query: 113 RERAKIL-----LNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE---K 163
            +  +       LNL   A+       +     V+ S      +++ NG      E    
Sbjct: 393 LDVDRAAVAGALLNLLQNAYKYSGPDNRRITLQVRGSGKGVDLTVEDNGVGIAPQERTRI 452

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +       +   +       +   +  R+  +         +  L 
Sbjct: 453 FERFYRVDNLLTRRTEGSGLGLAITRRIIETHGGRISVQSEPGKGSRFTIHLP 505


>gi|30262629|ref|NP_845006.1| sporulation kinase B [Bacillus anthracis str. Ames]
 gi|47527936|ref|YP_019285.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49185471|ref|YP_028723.1| sporulation kinase B [Bacillus anthracis str. Sterne]
 gi|165869078|ref|ZP_02213738.1| sporulation kinase B [Bacillus anthracis str. A0488]
 gi|167632511|ref|ZP_02390838.1| sporulation kinase B [Bacillus anthracis str. A0442]
 gi|167637789|ref|ZP_02396068.1| sporulation kinase B [Bacillus anthracis str. A0193]
 gi|170685331|ref|ZP_02876555.1| sporulation kinase B [Bacillus anthracis str. A0465]
 gi|170704644|ref|ZP_02895110.1| sporulation kinase B [Bacillus anthracis str. A0389]
 gi|177649662|ref|ZP_02932664.1| sporulation kinase B [Bacillus anthracis str. A0174]
 gi|190565415|ref|ZP_03018335.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I]
 gi|227814539|ref|YP_002814548.1| sporulation kinase B [Bacillus anthracis str. CDC 684]
 gi|229600427|ref|YP_002866946.1| sporulation kinase B [Bacillus anthracis str. A0248]
 gi|254685215|ref|ZP_05149075.1| sporulation kinase B [Bacillus anthracis str. CNEVA-9066]
 gi|254737666|ref|ZP_05195369.1| sporulation kinase B [Bacillus anthracis str. Western North America
           USA6153]
 gi|254743154|ref|ZP_05200839.1| sporulation kinase B [Bacillus anthracis str. Kruger B]
 gi|254751981|ref|ZP_05204018.1| sporulation kinase B [Bacillus anthracis str. Vollum]
 gi|254760502|ref|ZP_05212526.1| sporulation kinase B [Bacillus anthracis str. Australia 94]
 gi|30257261|gb|AAP26492.1| sporulation kinase B [Bacillus anthracis str. Ames]
 gi|47503084|gb|AAT31760.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179398|gb|AAT54774.1| sporulation kinase B [Bacillus anthracis str. Sterne]
 gi|164715804|gb|EDR21321.1| sporulation kinase B [Bacillus anthracis str. A0488]
 gi|167514338|gb|EDR89705.1| sporulation kinase B [Bacillus anthracis str. A0193]
 gi|167532809|gb|EDR95445.1| sporulation kinase B [Bacillus anthracis str. A0442]
 gi|170130445|gb|EDS99306.1| sporulation kinase B [Bacillus anthracis str. A0389]
 gi|170670691|gb|EDT21430.1| sporulation kinase B [Bacillus anthracis str. A0465]
 gi|172084736|gb|EDT69794.1| sporulation kinase B [Bacillus anthracis str. A0174]
 gi|190563442|gb|EDV17407.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I]
 gi|227006941|gb|ACP16684.1| sporulation kinase B [Bacillus anthracis str. CDC 684]
 gi|229264835|gb|ACQ46472.1| sporulation kinase B [Bacillus anthracis str. A0248]
          Length = 422

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 NTKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413


>gi|65319950|ref|ZP_00392909.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 363

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 133 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 192

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 193 RAQGIIXDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSMATIVGNK 252

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 253 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQVNRFGEPYF 311

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 312 NTKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 354


>gi|222527409|ref|YP_002571880.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|222451288|gb|ACM55554.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 488

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 65/215 (30%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ A+  +LE+LD     +  +  EV+  +R  +   I  +  + L   
Sbjct: 256 FVADVSHELRTPLTAMQGNLEILDRGTCPDPALLKEVIGDMRRETARLIRMVNDLLLLAQ 315

Query: 73  YTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
               V             L    ++      V  R+                + LLNL +
Sbjct: 316 SETHVVLRHEPVELDTLLLEVFRELRPLAGQVRLRIGAEDQILVYGDRDRIKQALLNLGV 375

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTIDSH 179
            A    P GG V +S++  +     S+   G           F +      +        
Sbjct: 376 NALQYTPPGGLVILSLERYEQFACLSVADTGVGISEEARAHIFERFYRVDRSRSRHSGGA 435

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +A  +   +            +  L 
Sbjct: 436 GLGLSIVKWVAEAHGGYVTVASEVGRGSTFAIYLP 470


>gi|60682012|ref|YP_212156.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60493446|emb|CAH08232.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 812

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  L +   + I H+I +P+ AI    +LL   D+   ++E  + I+ ++
Sbjct: 575 LRAARDKAEESNRLKSAFLANISHEIRTPLNAIVGFSDLLMTVDDPAEQEEFRRTIQKNN 634

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
              +     +                 V        + Q + + ++    +Q+       
Sbjct: 635 TLLLQLFSDIIDLSKIDAGSFEYTPKPVCLYQFCAMMVQKMRNKVSEGVELQIDEDSPLD 694

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    +++ N    A     RG        D++ +    ++  G      E   
Sbjct: 695 AWFSADSGYLNQVVTNFMSNAIKFTHRGTITVGYRIDARQQLEMFVEDTGIGISI-ENQE 753

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  +  +S +    +       +  +    +               L 
Sbjct: 754 AVFDRFMKVDSFVQGTGLGLPLCKSIIEKMGGHIGVISELGKGSRFWFTLP 804


>gi|237718855|ref|ZP_04549336.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451987|gb|EEO57778.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 407

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI    +L+        +++  ++I  +S   +     
Sbjct: 185 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 244

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      ++        +D  + L                  V             
Sbjct: 245 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFWHKTQNGVKLILDDVDTDMYTSGDWNRI 304

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +I+ NL   A    P+G  +    ++ ++   F +K +G         T          
Sbjct: 305 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD 363

Query: 176 I-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +L  +   R+     +         L 
Sbjct: 364 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 403


>gi|229191211|ref|ZP_04318199.1| hypothetical protein bcere0002_28760 [Bacillus cereus ATCC 10876]
 gi|228592226|gb|EEK50057.1| hypothetical protein bcere0002_28760 [Bacillus cereus ATCC 10876]
          Length = 801

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIKPNDISVLMDQVLMLLQPQAMMNNIKIRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTTVEVTLP 795


>gi|225849372|ref|YP_002729536.1| integral membrane sensor signal transduction histidine kinase
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644390|gb|ACN99440.1| integral membrane sensor signal transduction histidine kinase
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 670

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 20/229 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLI 53
               L S  L  +  L + I H++ +P+  I+ S   L                  +  I
Sbjct: 434 ENQILQSEKLAVIGKLVASISHEVKNPLSIINQSAYSLKRKVNKLCKENAEEIIAGLDRI 493

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKID 110
             S   A   ++ +        S    I + D+ +         A    + +S       
Sbjct: 494 EKSVYRANDIVERLLNFTKPYYSKIESINIKDVIEEAIKLSFLQAKRSDISISKRLSNAY 553

Query: 111 LSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  +R  ++     +   ++                 SK   +  ++  G          
Sbjct: 554 IKGDRNALIQLFINILINAIESIEDKGSISIKAYKDKSKGLAVIKIRDTGVGIPSQYL-D 612

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +      +    V  +   +  ++  E  +      +  L 
Sbjct: 613 KIFEPFFTTKESGTGLGLAVVYRIVESHGGKIYVESEEGKGTEFTVELP 661


>gi|167762689|ref|ZP_02434816.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
 gi|167699029|gb|EDS15608.1| hypothetical protein BACSTE_01047 [Bacteroides stercoris ATCC
           43183]
          Length = 906

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/229 (9%), Positives = 54/229 (23%), Gaps = 20/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
           AK        +    L  + + H+I +P+ AI     ++    +         ++  ++ 
Sbjct: 502 AKEKAETSDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESTDAEERQNYYDIVEANNE 559

Query: 59  SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +  +                          + D  +                   
Sbjct: 560 RLLQLINEILDLSKIEAGIVEFTITPVRLHPLCKEIHDALKFRCPEGVELVYEASDEEIT 619

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A     RG       +   NE  F +   G   +  +K  ++
Sbjct: 620 VEGDKNRIFQVISNLIGNAFKFTTRGSVGYGYRRK-GNEIEFYVSDTGIGIQ-TDKLAKV 677

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  V   +      +       +       +            +  L 
Sbjct: 678 FERFVKVNTFAQGTGLGLSICKTIIERLGGTISVCSEVGKGTTFTFTLP 726


>gi|238792705|ref|ZP_04636337.1| Signal transduction histidine kinase [Yersinia intermedia ATCC
           29909]
 gi|238728061|gb|EEQ19583.1| Signal transduction histidine kinase [Yersinia intermedia ATCC
           29909]
          Length = 479

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 71/220 (32%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKF 66
               L  +  L + + H+I +P+ +I    +  +       E  +L ++ +       + 
Sbjct: 245 RKDKLAVMGNLAAGVAHEIRNPLSSIKGFAKYFESRSLPGSEEQELAKVMAKEVDRLNRV 304

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKID---LSRER 115
           +          D      +I ++IE  +            ++  +               
Sbjct: 305 ISELLELVRPTDLRFQRVNINEIIEHSLHLVRQDAESKHIKILFAGDRHLPWVELDPDRF 364

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++   G + IS++         S+K +G      +    I D    +
Sbjct: 365 TQVLLNLYLNAIQAIGANGTLAISLELVEGIHLKVSIKDSGKGITADDLP-HIFDPYFTT 423

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +  E++ ++          + S  + 
Sbjct: 424 KASGTGLGLAIVQKVVEEHQGQISVTSTPQSGTIFSLTIP 463


>gi|229145815|ref|ZP_04274195.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24]
 gi|228637646|gb|EEK94096.1| hypothetical protein bcere0012_29650 [Bacillus cereus BDRD-ST24]
          Length = 448

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L                + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNNGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTVRVELPK 448


>gi|254425959|ref|ZP_05039676.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196188382|gb|EDX83347.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1186

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 70/233 (30%), Gaps = 25/233 (10%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSA 60
            +     L +        S + H++ +P+ +IH SL+L+         +  +L+ ++  + 
Sbjct: 953  RKANERLQNE-----FISMVSHELRTPLTSIHGSLKLMSMMIGDSNSKEKELVAIALKNT 1007

Query: 61   IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGE 107
                      + L    +G V       ++ ++++        + +              
Sbjct: 1008 DRLGRLINDVLDLERIESGRVSMTRQDCNLAELMQHTAQAMAPMALELNVKLVVEPIDIT 1067

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                     + L NL   A    P    V +S  + + + +   K +G      +    F
Sbjct: 1068 ISLDPDRIIQTLTNLLSNAIKFSPSRANVILSATEREQDVLLCTKDSGPGIPADKTELIF 1127

Query: 165  TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    +      +    +       +  ++  ++  E   +        L K
Sbjct: 1128 ERFQQVDSRESRRLGGTGLGLAICKQIVLQHGGKIWVESELEKGSAFYFTLPK 1180


>gi|218778198|ref|YP_002429516.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759582|gb|ACL02048.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 603

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 67/220 (30%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59
               L A+  L + + H+I +P+ +I               D+  I   + + +   +  
Sbjct: 370 RQEKLSAIGELAAGVAHEIRNPLSSIKGLATYFSQKFDKGSDDEEIAQGMAREVDRLNRV 429

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
               L F R +      +D    +    ++  +D +  +  +     G+      +  ++
Sbjct: 430 VSQLLDFARPSDLNLRPMDINELIPHSLKLVKQDALTRNINIISQPGGKPAFAMADADRL 489

Query: 119 LLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
              L  +   ++    K       +  +   +    ++  G      +   +I D    +
Sbjct: 490 TQCLLNLYLNAMAAMNKGGVLTVRTAVEDSGDVRVEVEDTGKGIPSQDLN-RIFDPYYTT 548

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +   +  R+  E       ++S  + 
Sbjct: 549 KASGTGLGLAIVHKILEGHHARIKVESRPGQGTLVSMFIP 588


>gi|270307587|ref|YP_003329645.1| sensor kinase, two-component system, OmpR family [Dehalococcoides
           sp. VS]
 gi|270153479|gb|ACZ61317.1| sensor kinase, two-component system, OmpR family [Dehalococcoides
           sp. VS]
          Length = 581

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + +++        +     + I H++ +PI ++    E L E    D  +          
Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPISSLKLLTETLQEGAASDPAVAAGFIDKIHL 405

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106
            +   +           +  G          +         ++          + V    
Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLRLQPGDISTAIKLAAERLRPQAERAGISLGVELPE 465

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
               +  +     ++L+NL   A    P+GG++ I  +      +  +  +G      + 
Sbjct: 466 TLPQVKLDENRVEQVLVNLVHNAIKFTPKGGRIKIGARTQGQTLVVYVSDSGIGIPEEDL 525

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   +     +       +   +   +  E +       S  L 
Sbjct: 526 TRVFERFYKVDKARSSGGTGLGLAISKHIVQAHGGTIWAESVYGKGATFSFSLP 579


>gi|104783675|ref|YP_610173.1| sensory box histidine kinase CrbA [Pseudomonas entomophila L48]
 gi|95112662|emb|CAK17390.1| sensory box histidine kinase CrbA [Pseudomonas entomophila L48]
          Length = 989

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 73/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          +  
Sbjct: 736 LTETQALEEKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 795

Query: 48  EVMQLIRLSSMSAIIRLKFMR------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           ++++  +  S      + F         +       +       +  +      V     
Sbjct: 796 QILEQTKRVSRIVQSLMSFAHAGGSQQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 855

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +  A++L+NL   A  + P G  V +  + S++     ++  G+     
Sbjct: 856 CDPDHWVEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVSEHTVDLVVEDEGSGIPKS 915

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 916 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 974


>gi|307821953|ref|ZP_07652185.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307736519|gb|EFO07364.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 545

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 60/223 (26%), Gaps = 23/223 (10%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQLIRLSSMSAI 61
           L+  + S I H++  P+ AI +  +            L+    I  +  Q    +     
Sbjct: 314 LMGEMASGIAHEVNQPLTAISSYTQVSLNLINTENPDLVRLTEILSKTQQQALRAGRIIH 373

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              +F++    +  S D    + +   +   +    D +++         +  +  +I  
Sbjct: 374 RMREFVKSHSKHRSSADVNTLIHEAVGLCIAELKQNDIKLKFELENNLPPVYVDHIQIEQ 433

Query: 121 NLFM---VAHASLPRGGKVTISVQD------SKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +      +  +L                    N     +K NG      ++  +I+   
Sbjct: 434 VIINLIRNSVEALQNLSAKQQRQLTVNSRLAPNNGVRVEVKDNGPGL-DQDQRQKILTPF 492

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  D   +       L   +   L               L 
Sbjct: 493 YTTKADGMGMGLSISRSLIEAHNGTLHCNSQPGKGATFYFTLP 535


>gi|228959448|ref|ZP_04121137.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228800224|gb|EEM47152.1| hypothetical protein bthur0005_29330 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 448

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSTKGEGTTVQVELPK 448


>gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1116

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 54/236 (22%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           +     L  +D L     +   H++ +P+  I    E L +             + LI  
Sbjct: 432 ETKNTALQRLDQLKDEFLANTSHELKTPLNGIIGIAESLMDGVTGNLSDATRFNLSLIVS 491

Query: 56  SSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           S       +  +                 V        +  + +  +       ++    
Sbjct: 492 SGRRLHQLVNDLLDFSQLKHHNLQLNIKPVGIREVTHVVLTISQPLVGKKPIELINGINP 551

Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            I           +IL NL   A     +G     +   +       +   G      + 
Sbjct: 552 DIPPVDADENRVQQILYNLVSNAIKFTEQGTIEVSATPVNDR-LEIHVVDTGIGISPDKI 610

Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     DG++        +       L   +   +  +         +  L 
Sbjct: 611 NRIFESFEQADGSITRHYGGTGLGLAITKQLVELHGGIIKVDSTPGVGSRFTFTLP 666


>gi|153829230|ref|ZP_01981897.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae 623-39]
 gi|148875268|gb|EDL73403.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae 623-39]
          Length = 597

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|27466937|ref|NP_763574.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57865895|ref|YP_190074.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           RP62A]
 gi|242243237|ref|ZP_04797682.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           W23144]
 gi|251811383|ref|ZP_04825856.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874740|ref|ZP_06283619.1| PAS domain S-box [Staphylococcus epidermidis SK135]
 gi|293367562|ref|ZP_06614215.1| sensor histidine kinase YycG [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|81672854|sp|Q5HK19|WALK_STAEQ RecName: Full=Sensor protein kinase walK
 gi|81844243|sp|Q8CU87|WALK_STAES RecName: Full=Sensor protein kinase walK
 gi|27314479|gb|AAO03616.1|AE016744_19 two-component sensor histidine kinase [Staphylococcus epidermidis
           ATCC 12228]
 gi|57636553|gb|AAW53341.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           RP62A]
 gi|58003339|gb|AAW62232.1| two-component sensor histidine kinase [Staphylococcus epidermidis]
 gi|242233186|gb|EES35498.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           W23144]
 gi|251805132|gb|EES57789.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296456|gb|EFA88971.1| PAS domain S-box [Staphylococcus epidermidis SK135]
 gi|291318275|gb|EFE58668.1| sensor histidine kinase YycG [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|319399898|gb|EFV88144.1| sensory box histidine kinase YycG [Staphylococcus epidermidis
           FRI909]
 gi|329728493|gb|EGG64929.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU144]
 gi|329736055|gb|EGG72328.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU045]
          Length = 610

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 66/219 (30%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +    + + R  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEEGAWQDKELAPSFLSVTREETERMIRLVNDLLQLSK 440

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                D +        +  + I     +    T    ++ ++            ++  N+
Sbjct: 441 MDNESDQITKEIIDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 500

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 501 ITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|95929327|ref|ZP_01312070.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134443|gb|EAT16099.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 374

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 66/223 (29%), Gaps = 14/223 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAI 61
                 +  L  L  L + + H+I +P+G+I  + E+L      ED   +   +      
Sbjct: 140 EEQLRQADRLTTLGELSAGLAHEIRNPLGSIRGTAEILQGAFSTEDRYHEFTTILINEVD 199

Query: 62  IRLKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              + +     Y                L  +  +  V      V   V V         
Sbjct: 200 RLNQVLENYLRYARPDSMEKQQFSLAPILDDVVQLTAVKARKNRVAVDVDVDVANSVAGD 259

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           + +  +  LNL + A  ++  GG ++I     +N  +      G      E+  +I    
Sbjct: 260 ASQYKQAFLNLILNALQAMGEGGCLSILATTDENRAVVRFCDTGPGL-TEEQRQKIFKPF 318

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       + H +   ++ E +          L 
Sbjct: 319 YTTRSKGTGLGLAITERIVHNHGGSIMVESLPKQGCCFELRLP 361


>gi|329921992|ref|ZP_08277799.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328942452|gb|EGG38715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 484

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 18/212 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72
           S I H++ +P+ +I    E LD    +       MQ+I   +   I  ++ +        
Sbjct: 250 SSISHELRTPLTSIKGWSETLDSGGYDPEETKIGMQIISKETDRLIGLVEELLDFSKLQQ 309

Query: 73  --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                        + L  +        +   V  +++               ++ LN+  
Sbjct: 310 NEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESDEKPIIYGDVNRLKQVFLNIVD 369

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQ 182
            A       G + +S    +   I +++ +G      E   ++ D   +         + 
Sbjct: 370 NAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGI-SDEHLRRVKDRFFQVNPLNGGTGLG 428

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 L   +   +  E    H   +   L 
Sbjct: 429 LAITQQLVELHGGTMEMESELGHGTAVIVKLP 460


>gi|294497159|ref|YP_003560859.1| sporulation kinase KinC [Bacillus megaterium QM B1551]
 gi|294347096|gb|ADE67425.1| sporulation kinase KinC [Bacillus megaterium QM B1551]
          Length = 436

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 17/225 (7%), Positives = 70/225 (31%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            ++    ++S  +  +  +   + H+I +P+ ++   ++++       D  + ++     
Sbjct: 204 RQDEELMITSEKMSVIGQMAGAVAHEIRNPLTSLKGFVQVMQASKETNDTYLDIMMSEID 263

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGEKI 109
              +    M +             L +I + +   +     +                  
Sbjct: 264 RINLISSEMLILGKKQHVSFEKTNLCEILKQVITLMEAQANLNNVSILLKETAKRPIYVS 323

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             + +  ++ +N+      ++   G +TI+V++     +   + NG      E+  Q+  
Sbjct: 324 ADANQLKQVFINVIKNGVEAIMEKGHITITVEEKDTRALIHFEDNGIGM-SQERIEQVGT 382

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   ++  +  +        ++  + 
Sbjct: 383 PFYSTKEAGTGLGLAVCYKIMERHQGTMHFKSGKGKGTTVTIDMP 427


>gi|228901195|ref|ZP_04065396.1| hypothetical protein bthur0014_23910 [Bacillus thuringiensis IBL
           4222]
 gi|228858445|gb|EEN02904.1| hypothetical protein bthur0014_23910 [Bacillus thuringiensis IBL
           4222]
          Length = 360

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + +      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMYGSLKIRSIVSKGTTLTITFPK 354


>gi|228965579|ref|ZP_04126661.1| hypothetical protein bthur0004_24060 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794172|gb|EEM41693.1| hypothetical protein bthur0004_24060 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 360

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + +      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMYGSLKIRSIVSKGTTLTITFPK 354


>gi|261406259|ref|YP_003242500.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261282722|gb|ACX64693.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 484

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 18/212 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72
           S I H++ +P+ +I    E LD    +       MQ+I   +   I  ++ +        
Sbjct: 250 SSISHELRTPLTSIKGWSETLDSGGYDPEETKIGMQIISKETDRLIGLVEELLDFSKLQQ 309

Query: 73  --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                        + L  +        +   V  +++               ++ LN+  
Sbjct: 310 NEMKLVKGIVNLRELLQEIMLNLWTKAEKKGVQIKLESDEKPIIYGDVNRLKQVFLNIVD 369

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQ 182
            A       G + +S    +   I +++ +G      E   ++ D   +         + 
Sbjct: 370 NAVKFSHENGVINLSFAMEEKFVIVTVQDHGIGI-SDEHLRRVKDRFFQVNPLNGGTGLG 428

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 L   +   +  E    H   +   L 
Sbjct: 429 LAITQQLVELHGGTMEMESELGHGTAVIVKLP 460


>gi|251797199|ref|YP_003011930.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247544825|gb|ACT01844.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 478

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 76/222 (34%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           + +      + L+  L + I H+I +P+ ++   +++  +   +        +       
Sbjct: 255 EELIRRSEKLSLIGELAAGIAHEIRNPLTSLRGFMQMYLKEDKDGSKKLRNDVMISEIDR 314

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIED----------FIAVDKRVQVSWTGEKIDLS 112
             + +          + +  L D+  ++               V  + +       I+  
Sbjct: 315 INEIVSELLVLAKPSNEVYELRDVVHLLTHVTRLFEGQANLYNVQIKHEFDANLPLIECQ 374

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               ++ +N+F  A  S+P+GG+V++  +  K+     +K  G      E  T+I +   
Sbjct: 375 SSINQVFINVFKNAIESMPKGGEVSLQAKQIKDRINIRIKDTGYGI-PHEDITKIGNPFF 433

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +     + +   +K  +  E       ++  +L 
Sbjct: 434 TTKETGTGLGLMVSMRIIQNHKGTMRIESEVGKGTMVEIILP 475


>gi|78223353|ref|YP_385100.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78194608|gb|ABB32375.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 603

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 71/231 (30%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIR 54
           +       L +  + A+  L   + H+I +P+ AI  +++++ +       ++    ++ 
Sbjct: 362 LESTFDELLVAKKVAAVGHLALGLAHEIRNPLSAIQMNMQMIRKKIAPAGTLRENFSIVE 421

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGE 107
                    L  +               L  I   +   +        V   V++     
Sbjct: 422 EEIQRLNRLLNDVLDFARSRPLRLETAELEGIVDRLMQLMAQRLEEEQVRSEVRIDSPLN 481

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEK 163
            +    +  ++LLNL + A  ++ R        TI+ Q      +  +   G     P+K
Sbjct: 482 LVCDPEQIHQVLLNLVLNALDAMNRTPPDARLLTITAQSMSGMALLRVSDTGGGI-PPDK 540

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             Q+ +    +      +    +  +   +   +  E         +  L 
Sbjct: 541 LEQLFEPFFTTKASGGGLGLSILQTIVLRHGGSVSVESEPGRGATFTVTLP 591


>gi|75763238|ref|ZP_00742996.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74489277|gb|EAO52735.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 419

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 249

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + +      +     L  +  +I     ++             + 
Sbjct: 250 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMYGSLKIRSIVSKGTTLTITFPK 413


>gi|322420087|ref|YP_004199310.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320126474|gb|ADW14034.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 593

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 60/226 (26%), Gaps = 19/226 (8%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
             + S  + A   L + I H++ +P+  I    +L          ++           R 
Sbjct: 363 QLVQSEKMAAFGALGAGIAHEVKNPLAGILGITQLSLRGVGGGHSLEKNLHIIEKETRRC 422

Query: 65  KFMRLAFGYTGSVDS---------LIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDLS 112
           K +          +           +    +  V         +V++            +
Sbjct: 423 KTIIENLLKFARQEQVEFGEVDVSQVVADALAIVDHQLGINSVKVEMDLEPGLPGCRGNA 482

Query: 113 RERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +  ++L+NL + A  ++   G      + +  +      +  NG      E   +I D 
Sbjct: 483 NQLQQVLMNLMINAQQAMGGRGGTVRLSARRREEGGVELRVSDNGPGI-PKEIRAKIFDP 541

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +        +       +  ++   +  E            L 
Sbjct: 542 FFTTKPAGQGTGLGLSVSYGIVKDHGGEIRLESEQGVGTTFIITLP 587


>gi|229515310|ref|ZP_04404770.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae TMA 21]
 gi|229348015|gb|EEO12974.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae TMA 21]
          Length = 597

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|57235045|ref|YP_180877.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195]
 gi|57225493|gb|AAW40550.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes 195]
          Length = 1061

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 2    AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
             K     + +  + ++  L S + H+I +P+  I    ELL    +E+ + + ++     
Sbjct: 815  KKLEQQLIMTDRMASVGELASGLAHEINNPLTGIVGFSELLLMNELEESIKEDVQTIHRE 874

Query: 60   AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDL 111
            A+         L F R       + D  + +  + ++ +    ++    +     +   +
Sbjct: 875  ALRAAEVVRNLLTFARQQTPTREAGDINLSIQKVLELRKHDHRINNIRCITELDPDLPRV 934

Query: 112  SRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              +  +I   L  +   +     L    ++TI     K   + S+  NG     PE   +
Sbjct: 935  MLDVFQIQQVLINIIINAEFFLRLKEHPQITIKTSRRKGYAVISISDNGPGI-SPENIKR 993

Query: 167  IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I D    +        +       +  E+  R+  E    +       L 
Sbjct: 994  IFDPFFTTKEVGKGTGLGLSICHGIIEEHHGRISAESTPGNGATFRIELP 1043


>gi|27804864|gb|AAO22901.1| histidine kinase [Myxococcus xanthus]
          Length = 830

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
            K +   L ++  + A+  L + + H+I +P+  +  +LE  +    +  +         
Sbjct: 424 TKELQARLVAAERVAAVGTLAAGVGHEINNPLAYLVLNLEAAERGLSQGGMSGMRDAMAN 483

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++      +       F R      G VD    +    ++I   +    R+   + 
Sbjct: 484 MRGALEGAERIRLIVRDLQVFSRQGNQDPGLVDLNALVPPAVRIISHALRHRARLVEEFG 543

Query: 106 GEKIDL--SRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLA 158
                        ++LLNL + A  ++P G      V+              +  +G   
Sbjct: 544 PVPRVSGSEARLGQVLLNLLVNAMQAIPEGNPSMNEVRVRTSTDASGRARVDVVDSGAGI 603

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I +    +    +   +       +   +   L          V S LL 
Sbjct: 604 -PAHVLPRIFEAFYTTKSSGEGTGLGLAICQQIVRAHGGELEVRSEPGRGSVFSVLLP 660


>gi|293553005|ref|ZP_06673650.1| sensor protein YycG [Enterococcus faecium E1039]
 gi|291602811|gb|EFF33018.1| sensor protein YycG [Enterococcus faecium E1039]
          Length = 611

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ ++ + +E L      +  +    +++    +   I  +  +     
Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                         +   V+ ++   D+    ++     +R            + +  ++
Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T  + ++ N  I S+   G      +    F +    +    
Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       +   ++  +  E  +         L
Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|257899653|ref|ZP_05679306.1| histidine kinase [Enterococcus faecium Com15]
 gi|293570842|ref|ZP_06681889.1| sensor protein YycG [Enterococcus faecium E980]
 gi|257837565|gb|EEV62639.1| histidine kinase [Enterococcus faecium Com15]
 gi|291609110|gb|EFF38385.1| sensor protein YycG [Enterococcus faecium E980]
          Length = 611

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ ++ + +E L      +  +    +++    +   I  +  +     
Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                         +   V+ ++   D+    ++     +R            + +  ++
Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T  + ++ N  I S+   G      +    F +    +    
Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       +   ++  +  E  +         L
Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|257885425|ref|ZP_05665078.1| histidine kinase [Enterococcus faecium 1,231,501]
 gi|257821281|gb|EEV48411.1| histidine kinase [Enterococcus faecium 1,231,501]
          Length = 611

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ ++ + +E L      +  +    +++    +   I  +  +     
Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                         +   V+ ++   D+    ++     +R            + +  ++
Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T  + ++ N  I S+   G      +    F +    +    
Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       +   ++  +  E  +         L
Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|257882230|ref|ZP_05661883.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|261208377|ref|ZP_05923027.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6]
 gi|289566830|ref|ZP_06447240.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecium D344SRF]
 gi|293567712|ref|ZP_06679055.1| sensor protein YycG [Enterococcus faecium E1071]
 gi|294616678|ref|ZP_06696448.1| sensor protein YycG [Enterococcus faecium E1636]
 gi|294619189|ref|ZP_06698675.1| sensor protein YycG [Enterococcus faecium E1679]
 gi|294623109|ref|ZP_06701995.1| sensor protein YycG [Enterococcus faecium U0317]
 gi|257817888|gb|EEV45216.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|260077438|gb|EEW65157.1| hypothetical protein EFZG_02419 [Enterococcus faecium TC 6]
 gi|289161361|gb|EFD09251.1| PAS/PAC sensor signal transduction histidine kinase [Enterococcus
           faecium D344SRF]
 gi|291589647|gb|EFF21452.1| sensor protein YycG [Enterococcus faecium E1071]
 gi|291590432|gb|EFF22171.1| sensor protein YycG [Enterococcus faecium E1636]
 gi|291594571|gb|EFF25962.1| sensor protein YycG [Enterococcus faecium E1679]
 gi|291597478|gb|EFF28643.1| sensor protein YycG [Enterococcus faecium U0317]
          Length = 611

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ ++ + +E L      +  +    +++    +   I  +  +     
Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                         +   V+ ++   D+    ++     +R            + +  ++
Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T  + ++ N  I S+   G      +    F +    +    
Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       +   ++  +  E  +         L
Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|228933930|ref|ZP_04096773.1| hypothetical protein bthur0009_23900 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825626|gb|EEM71416.1| hypothetical protein bthur0009_23900 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 413

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 79/223 (35%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLIKNSIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404


>gi|291288701|ref|YP_003505517.1| histidine kinase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885861|gb|ADD69561.1| histidine kinase [Denitrovibrio acetiphilus DSM 12809]
          Length = 484

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 84/228 (36%), Gaps = 17/228 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + K     +++ +LV +  L + + H++ +P+ AI    + +++  +  +    I++  +
Sbjct: 259 LRKT---AMNAENLVKMGRLSATVAHELKNPLVAIGGFTKRMEQTAVNPQTKNYIKIVQL 315

Query: 59  SAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 + +     Y+  VD  I           + +  +    F  ++  V+V+   + 
Sbjct: 316 EVHRLERIVGDILMYSRRVDLEISEFSLSSLVSEVIEFVRGCLCFSIIEVTVRVNPELKV 375

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L+NL   +   +  GG++T+   +S+     S+   G      +K  +I 
Sbjct: 376 HADRDRLRQVLMNLISNSVQEMTEGGELTVEASESERHVTLSVTDTGEGIPV-DKREKIF 434

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALLEK 215
           +           +       +   +   ++  +       V + +L K
Sbjct: 435 EPFYTLKKTGTGLGLPLCKKIMAAHGGDIVVGDSGTGAGAVFTLILPK 482


>gi|227552547|ref|ZP_03982596.1| histidine kinase [Enterococcus faecium TX1330]
 gi|257888222|ref|ZP_05667875.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257896890|ref|ZP_05676543.1| histidine kinase [Enterococcus faecium Com12]
 gi|293378480|ref|ZP_06624643.1| PAS domain S-box [Enterococcus faecium PC4.1]
 gi|227178296|gb|EEI59268.1| histidine kinase [Enterococcus faecium TX1330]
 gi|257824276|gb|EEV51208.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257833455|gb|EEV59876.1| histidine kinase [Enterococcus faecium Com12]
 gi|292642809|gb|EFF60956.1| PAS domain S-box [Enterococcus faecium PC4.1]
          Length = 611

 Score =  119 bits (298), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ ++ + +E L      +  +    +++    +   I  +  +     
Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                         +   V+ ++   D+    ++     +R            + +  ++
Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T  + ++ N  I S+   G      +    F +    +    
Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVILSITDQGLGIPKKDLNRVFERFYRVDKARA 560

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       +   ++  +  E  +         L
Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|260170318|ref|ZP_05756730.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|315918681|ref|ZP_07914921.1| two-component system histidine kinase [Bacteroides sp. D2]
 gi|313692556|gb|EFS29391.1| two-component system histidine kinase [Bacteroides sp. D2]
          Length = 499

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  F        ++ +   + +        K +    
Sbjct: 320 NSEHLVRLIDDILDLSKIESNTIKFTFSNCSLNSLMMDIEKEQAMKPISGIEIKSLLPDE 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                       +++ N    A                  + N     ++  G+      
Sbjct: 380 DVYINTDITRLKQVICNFINNARKFTQKGYIYFGYTLDNRNANSVQIFVEDTGSGIPQEC 439

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      ++      +       +    +  +  E         +  L 
Sbjct: 440 LNEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDIFVESKIGEGSCFTVTLP 492


>gi|242372584|ref|ZP_04818158.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           M23864:W1]
 gi|242349801|gb|EES41402.1| two-component sensor histidine kinase [Staphylococcus epidermidis
           M23864:W1]
          Length = 610

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 67/219 (30%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTSMNSYIEALEGGAWQDESLAPQFLSVTREETERMIRLVNDLLQLSK 440

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                D +        +  + I     +    T    ++ ++            ++  N+
Sbjct: 441 MDNESDQITKEIIDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 500

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 501 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 560

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 561 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 599


>gi|256840790|ref|ZP_05546298.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738062|gb|EEU51388.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 622

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            KN   +L    + A           + + H+I +P+ AI    EL+     ++E M   
Sbjct: 384 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 443

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99
            +  M+  + ++ +      +                 + +  +    ++          
Sbjct: 444 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 503

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            + +        S    +++ NL   A  +   G           ++  F ++  G    
Sbjct: 504 EKEADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYAIQPDDQLRFYVRDTGIGID 563

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   +   +       L  +    +            S +L 
Sbjct: 564 KEKLKDVFDRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 619


>gi|255280824|ref|ZP_05345379.1| sensor histidine kinase KdpD [Bryantella formatexigens DSM 14469]
 gi|255268761|gb|EET61966.1| sensor histidine kinase KdpD [Bryantella formatexigens DSM 14469]
          Length = 895

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +       +  L A L   I HD+ +P+ +I  +   L       D+   E     +  
Sbjct: 654 KEEAAIIAKNEQLRANLLRTISHDLRTPLTSISGNASNLLSNYRKLDDGARERIFTDIYE 713

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEK 108
            S     +    + +     G V     +  +++V           +    ++VS   E 
Sbjct: 714 DSMWLINLVENLLAVTRLEDGQVRLHQSVELMDEVVAEALRHTSRKSKSHTIRVSSAQEL 773

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I    +     ++L+NL   A      G  + I  +      + S+  NG      +K  
Sbjct: 774 ILAKIDARLVVQVLINLTDNAIKYTQEGSCIEIHTEQKDGWVVVSVSDNGPGIPDEQKMH 833

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +  S  +       + + +   +          V +  L 
Sbjct: 834 VFDMFYSGANKLADSRRSLGLGLSLCRSIVNAHGGTITVSDNHPEGTVFTFTLP 887


>gi|183179521|ref|ZP_02957732.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MZO-3]
 gi|183012932|gb|EDT88232.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae MZO-3]
          Length = 597

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQHDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|172039318|ref|YP_001805819.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171700772|gb|ACB53753.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 398

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 69/232 (29%), Gaps = 21/232 (9%)

Query: 5   ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSA 60
                  ++ L +   S + HD  +P+  I  S  LL++   +   D+ +   ++   + 
Sbjct: 152 QLLKAQELNQLKSEFVSILSHDFRNPLNTILLSAGLLEDSHDQLTRDQQLSYFQMIRQAV 211

Query: 61  IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
               + +                    +D       I   +        ++ VS+ GE  
Sbjct: 212 QDMNQLLSEVLLLGKADAGKLKPNFNELDIKQFCQQIIYSLHLSCEEKNQIMVSFKGELQ 271

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EK 163
               +      IL NL   A    P+GGK+ + +   +    F ++  G           
Sbjct: 272 GELWDEKLLWHILQNLLNNALKYSPQGGKIYVDIIAQEKTVTFRIQDQGIGISQESQKHL 331

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F      +    I    +    V       + ++  +         + +L +
Sbjct: 332 FEPFYRADNVENIAGTGLGLSIVRKCVEAYQGQIFVDSQLGKGTTFTVILPR 383


>gi|319653447|ref|ZP_08007547.1| hypothetical protein HMPREF1013_04164 [Bacillus sp. 2_A_57_CT2]
 gi|317394931|gb|EFV75669.1| hypothetical protein HMPREF1013_04164 [Bacillus sp. 2_A_57_CT2]
          Length = 412

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 71/217 (32%), Gaps = 13/217 (5%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAII 62
            +  L A+  + S + H++ +P+ A+    +L      ++      +++ I   ++ A  
Sbjct: 191 QTEKLAAVGQMASAVGHEVRNPLAALRGFTQLQMEKHPEDQDRYKIMIEEIDRINLIADD 250

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
            +   +        V+    +  +   + E     + RV+         +  +   +  +
Sbjct: 251 LMILSKPRLPLFKKVELNAVINYVISIIHEQAANQNIRVETENLEAVPKVQCDENMLKQS 310

Query: 122 LFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
              +   ++    +             ++ + S+K  G      E   ++VD    +  D
Sbjct: 311 FINLIKNAMESMPEGGTILISAKVAEGDKVLISIKDEGCGI-DAENMERVVDPFYTTKPD 369

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +  E+K  +  E       +++  + 
Sbjct: 370 GTGLGLMVTKQIVDEHKAEITFESEKGIGTIVTLTIP 406


>gi|258621300|ref|ZP_05716334.1| C4-dicarboxylate transport sensor protein dctB [Vibrio mimicus
           VM573]
 gi|258586688|gb|EEW11403.1| C4-dicarboxylate transport sensor protein dctB [Vibrio mimicus
           VM573]
          Length = 597

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 68/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLTR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103
           I   +       + ++     + S +          +          +  +   +  +V 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTAQFKAQMTKLELCEVD 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +    I +  S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALDGQAERLVQIRLHISEQQVQIFVDDNGPGIGL- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   ++ +    +  +   +       + H  +  L               L +
Sbjct: 537 ETLPKLFEPFHTTKKNGLGLGLSISQQILHSMQGELNVATAPIGGARFIITLPR 590


>gi|228955709|ref|ZP_04117704.1| hypothetical protein bthur0006_50570 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228803937|gb|EEM50561.1| hypothetical protein bthur0006_50570 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 672

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEDNAYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|229072923|ref|ZP_04206119.1| hypothetical protein bcere0025_50830 [Bacillus cereus F65185]
 gi|228710169|gb|EEL62147.1| hypothetical protein bcere0025_50830 [Bacillus cereus F65185]
          Length = 672

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEDNAYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIHDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|60681532|ref|YP_211676.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60492966|emb|CAH07744.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 899

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +  +      S  L +   + + H+I +P+ AI     ++ E    +E  +   + 
Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553

Query: 57  SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             +    L+               +   +G          + D            +    
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHPLCKEIHDAHVFRCPQGVELRFDSP 613

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         ++  NL   A      G       Q+     +F +K  G     PE
Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQE-GERVVFYVKDTGLGI-EPE 671

Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           K  ++        +      +       +       +            +  L 
Sbjct: 672 KLGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|17228687|ref|NP_485235.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130539|dbj|BAB73149.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 472

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 74/238 (31%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEVG----IEDEVMQ 51
           +A+ +   LS +    +      S + H++ +P+  +H  L+ +L        I+ E ++
Sbjct: 235 LAQTLTMLLSRLSQSWEQEREFVSNVSHELRTPLTIVHGYLQSVLRRQNNLTSIQQEALE 294

Query: 52  LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-V 102
           +    +   I  L+ +           +    +      + +I  + E +      ++  
Sbjct: 295 IAASEAERTIRLLQDLLDLARADSGYLYFQMKTYVLNDIVAEIVVMAEKYSDRLITIEST 354

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +  E         ++LLNL   A         +  ++   ++  I  +   G       
Sbjct: 355 IFPIEVKVDYSRFKQVLLNLIDNAVKYSEADTPIIFNLDQLQDTAIIQVCDQGYGIPLQH 414

Query: 163 ---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +    +   +       +    V  L       +  +       + + +L +
Sbjct: 415 QARIFERFYRIDESRSQATGGCGLGLSIVKTLVEGMGGSVSVQSKLGEGSIFTIILPR 472


>gi|147669243|ref|YP_001214061.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146270191|gb|ABQ17183.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 852

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 17/226 (7%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62
              + +  L +L  L + + H++ +P+ ++    EL+ E  + +++ Q I++ S  A   
Sbjct: 622 AQLMITDRLASLGELSAGLAHELNNPLTSVIGFSELIQEKILPEDLRQDIQIISQEAQRA 681

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER 115
                  L F R        VD    +  +  +        + ++  +      ++  + 
Sbjct: 682 AEIIRNLLTFARRHEPSKDWVDMNQIIHKVLAICNYGQKVHNIQLITNLDPNLPEIKADY 741

Query: 116 AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++   L  +   +     +        IS +   +    S++ +G              
Sbjct: 742 FQMQQVLLNIVINAEYFMTQSHGEGTIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDP 801

Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     +       +  ++  +L  E  +         + 
Sbjct: 802 FFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIEIP 847


>gi|312879472|ref|ZP_07739272.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782763|gb|EFQ23161.1| multi-sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 925

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 29/238 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++   + S   +  L  S + H+I +P+ AI    ELL E    D   + +RL   ++ 
Sbjct: 396 ARDRAESSSEAKMAFL--SHMSHEIRTPMNAIVGLSELLLEECPHDPQREQLRLIREASG 453

Query: 62  IRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             ++ +                     D       +  ++              V  S  
Sbjct: 454 SLMELLGDILDLSKIEAGRLELDHEPFDLEETCRSVCSLLGMEAKRKGLVFSWDVAPSAQ 513

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           G  +  S    ++L NL   A                  +    +  F ++  G      
Sbjct: 514 GFFLGDSFRLRQVLWNLVGNAVKFTERGRVHVTAWGEQGEGGARKVHFRVQDTGIGILPV 573

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +I +                 +       L       +L         V S  L
Sbjct: 574 NL-ERIFEYFSQGETLLHRRFPGTGLGLSISRHLVRAMGGEILVASEPGAGSVFSFSL 630


>gi|309790124|ref|ZP_07684697.1| GAF sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308227849|gb|EFO81504.1| GAF sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1029

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     L S  L AL  L S + HD  + + +I    +LL ++  ++ V++ + +   
Sbjct: 639 LQRTQEQLLHSERLRALGELASGLAHDFNNLLTSILGHAQLLLDITQDERVIEGLHIIEH 698

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK- 117
           +A      +R    ++ +  SL     +   +        R +     +   +     + 
Sbjct: 699 AARDGAATVRRLQNFSHTQRSLPDEEVVLDKVVIESLAMTRPRWRDAMQSNGIRLRVIQQ 758

Query: 118 ----------------ILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLA 158
                           ++ NL + A  ++P GG +      +Q      +  +   G   
Sbjct: 759 FGDLPPMVGDGSALREVVTNLILNALDAMPHGGDLFLRTEQIQADPPIALLEVSDTGTGM 818

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +                 +       +   +   +  +            L 
Sbjct: 819 TPEVRQRAFDPFFSTKGAQGTGMGLAMAYGIVQRHHGTITIQSEPGKGTTFLIRLP 874


>gi|297570503|ref|YP_003691847.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926418|gb|ADH87228.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 898

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 66/236 (27%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           +     +  ++ V LL + I HD  + + A+  +++L          +      ++   +
Sbjct: 520 EKELLKVKKLESVGLLAAGIAHDFNNLLTAVMGNIDLARFLLKKEQPDAEQLLNLLADSK 579

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111
            + + A    + +         +  L  L  + +    F+     V   +          
Sbjct: 580 KAGLRAQGLTQQLLTFARGGDPIRKLASLVAVIKDSAAFVLRGSGVSCEYQIADDLWLAE 639

Query: 112 --SRERAKILLNLFMVAHASLPRG-----------GKVTISVQDSKNENIFSLKINGNLA 158
               + ++++ N+ + A  ++                     +        ++  NG   
Sbjct: 640 IDQGQISQVIQNIVLNARQAMGENGRLLIGACNLAENEAPGPRRPGKFVAITISDNGPGI 699

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    I D    +  +   +       +  ++   +            + LL 
Sbjct: 700 PQKD-QELIFDPYYTTKENGSGLGLAICHSIVSKHDGYIEIASEPGTGTTFTILLP 754


>gi|307154252|ref|YP_003889636.1| histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984480|gb|ADN16361.1| histidine kinase [Cyanothece sp. PCC 7822]
          Length = 362

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 12/217 (5%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRL 64
            + ++ +L  L  +I H++ +P+  I    E L        + +V+ L    +       
Sbjct: 147 QNEEIKSLEHLIHKIGHELRNPLSLISLMAENLRLSLAESQQKQVVSLQETITNLNQNLN 206

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAKI 118
           + +  +      ++       + + I+    + +   VS    +           +  ++
Sbjct: 207 QLIDCSKRARLKLELCDLRYIVRKSIQSLNPIVESKAVSLQYPQDKEAIIAVDYLQIQQV 266

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
             NLF  A    P GGK+  + Q  + E I ++   G      +    I           
Sbjct: 267 FGNLFSNAIYFSPVGGKILCNWQFFQKEIIVTITDQGQGLSPQDLKN-IFTPFYSRRPGG 325

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +  ++  R+  E +       +  L +
Sbjct: 326 TGLGLTIVQKIIMDHGGRIWAENLVLGGTKFTFTLPR 362


>gi|77408345|ref|ZP_00785086.1| sensory box histidine kinase [Streptococcus agalactiae COH1]
 gi|77173026|gb|EAO76154.1| sensory box histidine kinase [Streptococcus agalactiae COH1]
          Length = 449

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + +EV        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115
           +    T     +         I +     +  +                +      + + 
Sbjct: 270 IDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T++++ +K + I S+   G      +    F +    + 
Sbjct: 330 TQVIDNILNNAVKYSPDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 390 ARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|25010797|ref|NP_735192.1| sensory box histidine kinase [Streptococcus agalactiae NEM316]
 gi|76787924|ref|YP_329468.1| sensory box histidine kinase [Streptococcus agalactiae A909]
 gi|76798188|ref|ZP_00780439.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21]
 gi|77410782|ref|ZP_00787140.1| sensory box histidine kinase [Streptococcus agalactiae CJB111]
 gi|77413072|ref|ZP_00789273.1| sensory box histidine kinase [Streptococcus agalactiae 515]
 gi|23095151|emb|CAD46386.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562981|gb|ABA45565.1| sensory box histidine kinase [Streptococcus agalactiae A909]
 gi|76586451|gb|EAO62958.1| sensory box histidine kinase [Streptococcus agalactiae 18RS21]
 gi|77160865|gb|EAO71975.1| sensory box histidine kinase [Streptococcus agalactiae 515]
 gi|77163161|gb|EAO74114.1| sensory box histidine kinase [Streptococcus agalactiae CJB111]
 gi|319744747|gb|EFV97089.1| sensor histidine kinase VicK [Streptococcus agalactiae ATCC 13813]
          Length = 449

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  + +EV        +             L   R
Sbjct: 210 LFVSNVSHELRTPLTSVKSYLEALDEGALNEEVAPSFIKVSLDETNRMMRMISDLLSLSR 269

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------TGEKIDLSRER 115
           +    T     +         I +     +  +                +      + + 
Sbjct: 270 IDNEVTHLDVEMTNFTAFMTSILNRFDQIRNQKTVTGKVYEIVRDYPLKSIWVEIDTDKM 329

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T++++ +K + I S+   G      +    F +    + 
Sbjct: 330 TQVIDNILNNAVKYSPDGGKITVNLRTTKTQMILSISDQGLGIPKKDLPLIFDRFYRVDK 389

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  ++K  +  +         + +L 
Sbjct: 390 ARSRQQGGTGLGLSIAKEIVKQHKGFIWAKSEYGKGSTFTIVLP 433


>gi|303326613|ref|ZP_07357055.1| sensor histidine kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302862601|gb|EFL85533.1| sensor histidine kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 580

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 67/233 (28%), Gaps = 25/233 (10%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIG-------------------AIHNSLELLDEVG 44
              L S  + AL  + + + H++ +P+                    ++ N  E+L+   
Sbjct: 326 ARMLQSSKMAALGKMAAGVAHEVNNPLMLIQENAGWIRDLLEDEKPESMKNYQEVLESTE 385

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
             ++ ++  +  +   +   + M  +              ++ +       +    +   
Sbjct: 386 KIEQHVKRAKGITQRMLGFGRRMNPSRTEILLNSLADQAVEMLKTEAASRNIVISKKFDP 445

Query: 105 TGEKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               I     +  ++ +N+   A  ++ + G + I  +  +         +G      E 
Sbjct: 446 QLPVILSDPAQLEQVFINIIDNAIDAIGKDGSLRIRTEACEQGARIFFTDSGPGM-DEET 504

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +    +   +       +  +   R+  +            L 
Sbjct: 505 LKRIFDPFFTTKKVGEGTGLGLAICFTILEKLGGRIEVQSQPGQGTTFCITLP 557


>gi|228915261|ref|ZP_04078855.1| hypothetical protein bthur0012_24810 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844378|gb|EEM89435.1| hypothetical protein bthur0012_24810 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 413

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404


>gi|49477810|ref|YP_036752.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49329366|gb|AAT60012.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 422

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVANK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413


>gi|312868823|ref|ZP_07729012.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3]
 gi|311095666|gb|EFQ53921.1| PAS domain S-box protein [Lactobacillus oris PB013-T2-3]
          Length = 617

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+ ++H+ +E L      +  I  + + +I+  +   I  +  +    
Sbjct: 379 QFVSNVSHELRTPLTSVHSYVEALSDGAWKDKDIAPQFLTVIQNETNRMIRMINDLLSLS 438

Query: 68  ---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                                       + +   E          +R            +
Sbjct: 439 RMDSGTTKLNLEYVNIKELFNYILNRFDMIIKKDENDQNSKKYTIERYFTDKDLWVEIDT 498

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  +++ N+   A    P GG +T  + ++ N  I S+   G      +          
Sbjct: 499 DKFTQVIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFR 558

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       + +    ++  + I+         L 
Sbjct: 559 VDKARSRKQGGTGLGLAISKEVINLLGGQIWVDSIEGQGSTFYISLP 605


>gi|317052639|ref|YP_004113755.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947723|gb|ADU67199.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 970

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 27/235 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57
           +    +  M   +   S + H++ +P+ +I+ SL L+      +      +++ +   +S
Sbjct: 478 SEQKRVELMK--SQFVSTVSHELRTPLTSINGSLGLIAGGAVGELPSQARQLVDIAYKNS 535

Query: 58  MSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
                 +  +            +   +  L+ + +      +       V         +
Sbjct: 536 QRLGYLINDLLDMEKIAAGKMRFDMILQELMPIVEQAMEANEAYGRQFNVTFALVERDDS 595

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L NL   A        +V I+V    N+    ++  G     PE   
Sbjct: 596 MLVRVDAQRLMQVLSNLLSNAAKFSASAERVEIAVMAQNNQVRVEVRDQGPGI-SPELQA 654

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++                   +       L       +          V    L 
Sbjct: 655 RLFTKFTQADSSDTRQKGGTGLGLAIAKELVERMGGTIGVHSEVGRGSVFFFELP 709


>gi|229184193|ref|ZP_04311402.1| hypothetical protein bcere0004_17570 [Bacillus cereus BGSC 6E1]
 gi|228599308|gb|EEK56919.1| hypothetical protein bcere0004_17570 [Bacillus cereus BGSC 6E1]
          Length = 293

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 59  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 235

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  + +       + K
Sbjct: 236 FERFYKADSSRNRAYGGSGLGLAIVQKVLDLHRGEIKVESEEGNGTEFIVCIPK 289


>gi|47568102|ref|ZP_00238807.1| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241]
 gi|47555256|gb|EAL13602.1| sensory box histidine kinase PhoR, putative [Bacillus cereus G9241]
          Length = 463

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 56/219 (25%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++  +     E                +          
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
           ++           + L      I    + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPKLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIAIEDEGEGIPLEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      +H       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVTSEVNHGSCFIISLP 454


>gi|262051886|ref|ZP_06024101.1| two-component sensor histidine kinase [Staphylococcus aureus
           930918-3]
 gi|259160213|gb|EEW45242.1| two-component sensor histidine kinase [Staphylococcus aureus
           930918-3]
          Length = 608

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDEELAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------DLSRERAKILLNL 122
                D +        +  + I     +    T                  +  ++  N+
Sbjct: 439 MDNESDQINKEIIDFNMFINKIINRHEMSAKDTTFIRDIPKKTIFTEFDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNPLYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIMEAHNGRIWANSVEGQGTSIFITLP 597


>gi|229523944|ref|ZP_04413349.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae bv. albensis VL426]
 gi|229337525|gb|EEO02542.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae bv. albensis VL426]
          Length = 597

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 65/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L       + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQADRVVQIRLQTSEQQIALFVDDNGPGVGID 537

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                + +    +  +   +       + H  +  L            +  L +
Sbjct: 538 TLP-HLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|229048377|ref|ZP_04193945.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676]
 gi|229147237|ref|ZP_04275594.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24]
 gi|228636246|gb|EEK92719.1| hypothetical protein bcere0012_43720 [Bacillus cereus BDRD-ST24]
 gi|228723102|gb|EEL74479.1| hypothetical protein bcere0027_43450 [Bacillus cereus AH676]
          Length = 484

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103
            +      +  + L      +            +    +  + ++ +S            
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K        + N+ I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSNNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+  ++  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGKIWAESELGKGTSIFFSLEK 478


>gi|90581396|ref|ZP_01237191.1| osmolarity sensor protein [Vibrio angustum S14]
 gi|90437373|gb|EAS62569.1| osmolarity sensor protein [Vibrio angustum S14]
          Length = 443

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 8/213 (3%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKF 66
              +  ALL + + HD+ +P+  I  + E++        E  +      +++ +      
Sbjct: 226 QLEEDRALLMAGVSHDLRTPLTRIRLATEMMSPEDSYLAESMITDTEECNAIISQFMDYL 285

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
                     +D    L D+      +    ++      G     +    + + NL + A
Sbjct: 286 KSTKKQEEEDLDLNTLLIDVAHTEGSYGKTIEQQLGEIPGMISANAVALKRAIANLVVNA 345

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDI 181
                   K++      +    F ++ +G      +                S  +   +
Sbjct: 346 QRYGKGWVKISSGASADRKSVWFCVEDDGPGIAPDQVNKMFQPLTRGDSARGSEAEGTGL 405

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +L     +  + +   L 
Sbjct: 406 GLAIVKRIVDQHDGVILVRNRSEGGLRVEVTLP 438


>gi|300867141|ref|ZP_07111807.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334896|emb|CBN56973.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 587

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 71/264 (26%), Gaps = 51/264 (19%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----------LL------- 40
           + +     + S  + +L  + + I H+I +PI  IH ++E           LL       
Sbjct: 322 LKQTQSQLIQSEKMSSLGQMVAGIAHEINNPINFIHGNIEHADGYIHDLMELLALYQQHY 381

Query: 41  ----DEVGIEDEVMQLI-----------------RLSSMSAIIRLKFMRLAFGYTGSVDS 79
               +E+  + E ++L                         I    F RL        D 
Sbjct: 382 PEPVEEIQNQIEAIELDFLSEDLPKILSSMKIGADRIRELVISLRNFSRLDECEMKITDI 441

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKILLNLFMVAHASLPR----- 132
             G+     ++   +    ++   +           +  ++ +N+      +L       
Sbjct: 442 REGIDSTLVILNYRLKHGIKIIKEYGELPPLNCYPAQLNQVFMNIISNGIDALEELGNSA 501

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA 190
                 +     N     ++ NG     PE    I D    +        +       + 
Sbjct: 502 PTIWINAEVFESNCVKVKIRDNGPGM-PPEIQENIFDPFFTTKSIGKGTGLGLAISHQII 560

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
            +++  +  +            L 
Sbjct: 561 TKHQGTIEVDSQPGEGTEFVITLP 584


>gi|228957070|ref|ZP_04118842.1| hypothetical protein bthur0005_6010 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802603|gb|EEM49448.1| hypothetical protein bthur0005_6010 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 463

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 62/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +                  + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKHISIAIEDEGEGIPLEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEILELHGGTITVTSEVDHGSCFIISLP 454


>gi|220904042|ref|YP_002479354.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868341|gb|ACL48676.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 673

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 65/227 (28%), Gaps = 19/227 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-----ELL---DEVGIEDEVMQLIR 54
                 +  L AL  L + + H++ +P+  I          +L    E      ++  + 
Sbjct: 438 QADAQRNDRLSALGHLAAGVAHEVRNPLSTIKGVALYIAKRMLPGGREEEAAQRMIDEVD 497

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----I 109
                    L+F R     T   D    +G   ++  +     + + V            
Sbjct: 498 RLDRVVSELLEFARPGAINTAEADLAEVIGRALRLA-EADMRSRHIHVVLDVPPGLPPVR 556

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQI 167
             +    + LLNLF+ A  ++  GG++ +   +         ++  NG      +    I
Sbjct: 557 VNTERLTQALLNLFLNAAQAMGEGGELRVGARLCSGGQTFCITVADNGPGI-ARDIQAAI 615

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +    V  +   +   +            +  L 
Sbjct: 616 FTPYFTTKPSGTGLGLAIVHQIVEGHGGNVSVTSAPGRGTEFTLELP 662


>gi|103487938|ref|YP_617499.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis
           alaskensis RB2256]
 gi|98978015|gb|ABF54166.1| PAS/PAC sensor signal transduction histidine kinase [Sphingopyxis
           alaskensis RB2256]
          Length = 514

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 62/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45
           + +     +    L A+  + S + H++  P+ AI N LE   +                
Sbjct: 270 LKELQAELVHVSRLSAMGTMASTLAHELNQPLTAIANYLETTRDLVDGEGDIPRDILHEA 329

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101
             E       +         F+          D    + +  ++      +         
Sbjct: 330 LTEAANETLRAGYIVRRLRDFVARGEVEKTVEDLPRLIDEAGKLALIGARERGVRSFFTF 389

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLA 158
                  +    +  ++L+N+   A  ++       + V            +++ +G   
Sbjct: 390 DPAATPTLVDRVQIQQVLVNIMRNAIEAMADSEVRELRVSTRLRADEMIEIAVEDSGPGI 449

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +   ++    V S  D   +       +   +  R+  E       V    L
Sbjct: 450 -AEDVIPRLFQAFVSSKSDGMGLGLSICRTIVEAHGGRIWVEDGPGGGAVFRFTL 503


>gi|302343683|ref|YP_003808212.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301640296|gb|ADK85618.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 892

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 74/243 (30%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIE-------DEVMQL 52
           + +        M+ +  L   + HD  + + AI   +EL L +   +       ++V++ 
Sbjct: 511 LLEAQLRQSQKMEAIGTLAGGVAHDFNNILSAIIGYVELALLDSAGDEALRGNLEQVLKS 570

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +       L + R       +      +G  E ++   +  D  ++V+ +     + 
Sbjct: 571 SWRARDLVAQLLAYSRKQLLSMSTFGLDEVVGRNEAMLRRIVGEDIDLEVNLSPFTGVVR 630

Query: 113 RERAKILLNLFM---VAHASLPRGGKV---------------TISVQDSKNENIFSLKIN 154
            + +++   L      A  ++P GGK+                 +        + ++  N
Sbjct: 631 ADVSQLEQVLLNLVANARDAMPTGGKITLETDNVHLDENYAARHAEATVGPHVMLAVSDN 690

Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      +   +I D    +        +    V  +  ++   +               
Sbjct: 691 GPGM-DSQTQERIFDPFFTTKGAGKGTGLGLAMVYGIVKQHGGSIYVYSEPGQGSTFKIY 749

Query: 213 LEK 215
           L +
Sbjct: 750 LPR 752


>gi|239906598|ref|YP_002953339.1| sensor protein ZraS [Desulfovibrio magneticus RS-1]
 gi|239796464|dbj|BAH75453.1| sensor protein ZraS [Desulfovibrio magneticus RS-1]
          Length = 614

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 63/232 (27%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIED 47
           + +             L A+  L + + H+I +P+ +I               ++    +
Sbjct: 369 LREVRRLEAEVRRREKLAAVGNLAAGVAHEIRNPLSSIRGYAAYFGGKFDPGSEDRQAAE 428

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTG 106
            +++ +   +      ++F R +      V      G   ++I    +A    + V    
Sbjct: 429 IMVREVDRLNRVISELIEFSRPSDIQRRPVRLADLAGHAARLIRPDALARGVEIAVEDAP 488

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFPE 162
              D+  +  ++   +  +   ++            +           +   G      E
Sbjct: 489 GVPDVPADPDRLAQAVLNLCLNAVQAMDAGGTLGLRTGLAPDGRAYLEVTDTGRGIDPAE 548

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +I D    +      +       +   +   +      +       LL 
Sbjct: 549 R-DRIFDPYYTTKARGTGLGLPIAHKIVAAHGGEIRLTPRPEGGTSAMVLLP 599


>gi|229046907|ref|ZP_04192539.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676]
 gi|228724452|gb|EEL75777.1| hypothetical protein bcere0027_29200 [Bacillus cereus AH676]
          Length = 448

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L                + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVSVYSKKGEGTTVRVELPK 448


>gi|53712805|ref|YP_098797.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215670|dbj|BAD48263.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 870

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 60/234 (25%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +       L +  L +   + + H+I +P+ AI    +LL +            ++ I  
Sbjct: 635 LTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEVKLFIETINK 694

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +  +                   G+   +            +   + +  ++  +
Sbjct: 695 NCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQRLNMPPGVQLVLKLPEN 754

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
                +  +    +++ NL   A     +G       ++        ++  G        
Sbjct: 755 SKKYLVTDNVRLQQVVNNLINNAVKFTTQGSITFGYTEEEPGYTSLFVEDTGKGISEDGL 814

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +  +      +       +       +     + H    +  L 
Sbjct: 815 RHIFERFYKVDSFTQ--GAGLGLSICQTIVGRLNGMITVASEEGHGTRFTVRLP 866


>gi|254507304|ref|ZP_05119440.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus 16]
 gi|219549764|gb|EED26753.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus 16]
          Length = 435

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 68/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIIGDTEECNEIISQFMD 279

Query: 66  FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++     +   VD      D+      +    +        E +       + + NL +
Sbjct: 280 YLKPVNKQSFIEVDLNDIADDVASSEGGYEVQIETQLYHPMKETLGSPIAIKRAVSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +          ++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSTGITADNKLVWVCVEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   ++        + +     
Sbjct: 400 GLAIVKRIVSQHNGSVIVNNRSGGGLKVQISFP 432


>gi|329927385|ref|ZP_08281644.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328938524|gb|EGG34909.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 459

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 62/237 (26%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +     +     + + H++ SP+ +I    + L +           + +
Sbjct: 213 LARSFEDMMHELQQLEQMRREFVTNVSHEVQSPLTSISGYAQALKQVDLSDDERRRYLDI 272

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDS---------LIGLGDIEQVIEDFIAVDKRVQVS 103
           I   +         +                           I  +   + A   + ++ 
Sbjct: 273 IIAEAKRMSKMSDSLLKLSLLESQSQQLGLSTLSLDEQIRRVIVALQPQWAARSIQFELD 332

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               K+    ++  ++  N+   +       G + +SV+   N     +   G      +
Sbjct: 333 LQAVKVTADHDQLNQVWTNIIGNSIKFSKDAGVIHVSVKQDMNHVTVRISDAGIGISLED 392

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  +   +    V L+   ++  +  E            L 
Sbjct: 393 QKRIFERFFKTDRSRSRKFEGSGMGLAIVKLIVSLHQGDIRVESEPGQGATFIVTLP 449


>gi|328949780|ref|YP_004367115.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328450104|gb|AEB11005.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 368

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 48/215 (22%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMR-------- 68
           L   + H++ +P+ A+    E L +     +   Q I     +    +  +         
Sbjct: 150 LIGTVAHELRTPLAALQGYAEALADGVMPPERAAQAIAREVSAMRRLVNDLSLVSRVEAG 209

Query: 69  ----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                       V     L                                 ++L NL +
Sbjct: 210 AIEVHPVSVAPRVLLEEALDRFAPAFAQKGVRLLLEAPEEMPWVQADPERVQQVLSNLLV 269

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179
            A    P GG V +  +   +   F ++  G           F +          +    
Sbjct: 270 NALRHTPSGGTVVLGARVEGDAVRFHVRDTGPGIPPEHQPRVFERFYRVDPARSRSAGGS 329

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L      R+  E            L 
Sbjct: 330 GVGLTIARGLVEAMGGRIGLESAPGRGAEFFFTLP 364


>gi|325109467|ref|YP_004270535.1| multi-sensor signal transduction histidine kinase [Planctomyces
            brasiliensis DSM 5305]
 gi|324969735|gb|ADY60513.1| multi-sensor signal transduction histidine kinase [Planctomyces
            brasiliensis DSM 5305]
          Length = 1506

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 22/231 (9%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
            + +    + +   A + S   HD+ +P+  I    + L E          DE +  I   
Sbjct: 1270 RALERTNAELKEFAYVAS---HDLQTPLRGISGFAQFLKEDYEGKLDEQADEYLSRISDG 1326

Query: 57   SMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
            +      +K +              SVD    L D+   +          V         
Sbjct: 1327 AQRMQRLIKDLLAYSQVDLTSSAFASVDLNTLLDDVIGYLRPAIETSAADVTAERLPTVQ 1386

Query: 110  DLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIV 168
              S +  ++  NL   +     +   V     ++ + E +  ++ NG     PE   +I 
Sbjct: 1387 GNSTQLFQLFQNLVSNSLKYRNQEHTVIQISAEEREEEWVIGVRDNGIGI-APEHHDRIF 1445

Query: 169  DGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +   +   +       +   +   +  E  +D+       L K
Sbjct: 1446 QIFRRLHTQKEYEGTGVGLALCRRIVERHGGEIWVESDEDNGCCFKFTLPK 1496


>gi|307297523|ref|ZP_07577329.1| multi-sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916783|gb|EFN47165.1| multi-sensor signal transduction histidine kinase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 903

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            +N+   L     L AL  + +R+ H+I +PI  I   ++ +       +  +  ++   
Sbjct: 663 RRNLEQELKGREKLAALGEMSARVAHEIRNPITIIGGFVKRILASSDRKKTEEYAKILMD 722

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWTG 106
                 + +      +               +   I                        
Sbjct: 723 ELQRLDRIVGEVLEVSRRKAKPSKEAFDLVSMTREILAGFEEKAASENVKLVLYTKEERI 782

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           E      +  ++++NL   A  +   G +V ++++    E  FS    G      E   +
Sbjct: 783 EYYGNRDKIKQVIINLVQNAIEASESGDEVHVTLEKDSEEIRFSAWNGGKTI-PEETLKR 841

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +      +       +  E+   +          V +  L 
Sbjct: 842 IFEPFFTTKTLGTGLGLSICKKIVEEHGGSIHA-SSGSEGTVFTFRLP 888


>gi|262192154|ref|ZP_06050314.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae CT 5369-93]
 gi|262031943|gb|EEY50521.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae CT 5369-93]
          Length = 597

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 66/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L     + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVIGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQHDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|257059382|ref|YP_003137270.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
 gi|256589548|gb|ACV00435.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8802]
          Length = 389

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSM-------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + K +      +        L +   S + HD  +P+  I  S  LL++ G +    Q I
Sbjct: 142 LEKRVEERTKQLIKAQELNQLKSEFVSMLSHDFRNPMNTILLSAGLLEDSGDQLTREQQI 201

Query: 54  RLSSMSAIIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
               M                         ++  F      +    L    Q+       
Sbjct: 202 SYFQMIRTAIKDMDQLLSEILLLGKADAGKLQGHFEELDLEELCHRLLHSLQLSAHHNHE 261

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                       +   +    I+ NL   A    P GGKV   + + +NE IF ++  G 
Sbjct: 262 IIFQSKGEFSRGLWDEKLLRHIINNLLNNALKYSPEGGKVNFDLIEKENEVIFRVQDQGI 321

Query: 157 LARFP---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                   + F      +  + I    +    V      +   +L +  +      + +L
Sbjct: 322 GISPEAQKQLFQPFYRADNVNNIPGTGLGLAIVQKCVEAHYGTILVDSQEGIGTTFTVIL 381

Query: 214 E 214
            
Sbjct: 382 P 382


>gi|220925300|ref|YP_002500602.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium nodulans ORS 2060]
 gi|219949907|gb|ACL60299.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium nodulans ORS 2060]
          Length = 571

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 72/244 (29%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLELL--------------- 40
           +       + +  + +L  L + I H+I +P+  I     ++E L               
Sbjct: 326 LKDAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLIGEVANEAGDLSGEA 385

Query: 41  -----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
                        +   +       +   KF RL  G   SV+    +  +  +I+  + 
Sbjct: 386 KAALAKARDRIGSMRLGLTRIQDLVVNLRKFSRLDEGELRSVNVPEAIETVLALIQHKLG 445

Query: 96  VDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
               V+  +    E         ++++N+   A  ++P  G++TI  +     ++  +  
Sbjct: 446 TRITVERRFKGEPEICCTPALLNQVVMNVIGNAADAIPGEGRITIETRSEAGNDVIRISD 505

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G          +I +    +        +       +   +   +  E           
Sbjct: 506 TGPGV-PEALRERIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGTISVETAPGGGACFVI 564

Query: 212 LLEK 215
            + +
Sbjct: 565 SIPR 568


>gi|197122987|ref|YP_002134938.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196172836|gb|ACG73809.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 654

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 19/232 (8%), Positives = 66/232 (28%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQ 51
            ++      +  L ++  + + + H++ +P+  I     L          +     + + 
Sbjct: 420 ERSERQLRETEKLASIGEMAAGLAHELNTPLSNIRALASLAKRDLEAGPADPRALSQDLA 479

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG-------DIEQVIEDFIAVDKRVQVSW 104
            +   +      ++ +           +   +        ++ ++  +   V    Q   
Sbjct: 480 DVTEQTRRCSAIIQGLLRFARRQPPALAAHDVDGLVRGALELVRLRAEGKGVALAFQPGP 539

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +  + +  ++ +NL + A  +   GG+V +S   +       +  +G         
Sbjct: 540 ARPAVVDAAQLEQVFVNLLLNAIDASGPGGRVEVSTGAADGRVSVRVTDHGAGIDPAHLP 599

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   +   L  +         +  L 
Sbjct: 600 -RIFDPFFTTKEVGQGTGLGLSVSYGIVRSHGGALRVDSAPGRGATFTVELP 650


>gi|119493256|ref|ZP_01624096.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119452729|gb|EAW33907.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 491

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 62/215 (28%), Gaps = 18/215 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+  +   L+  L         + E +++    +   I  L+ +    
Sbjct: 274 QFVSNVSHELRTPLTIVQGYLQSTLRRGNNLTPPQREGLEVAANEAERTIRLLQDLLELA 333

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                         +    L ++ ++  +         ++  T +         ++LLNL
Sbjct: 334 RADHGNLHFQIEPFEVNSLLSEVREMAQQFSQGRVHLEKIQGTIQVQADRNRLKQVLLNL 393

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES-TIDS 178
              A         +T+ V+ +  +   S+   G           F +    +        
Sbjct: 394 IDNAIKYSEPEQPITLKVKQTDKKVYLSVCDQGQGIPLQHQSRIFERFYRVDEARTRAGG 453

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    V  +      R+          + + +L
Sbjct: 454 TGLGLSIVKTIVEGMGGRVTLLSKPGEGSIFTVIL 488


>gi|116871682|ref|YP_848463.1| two-component sensor kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116740560|emb|CAK19680.1| two-component sensor kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 610

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                  L   +    D    + D  ++++    + KR              +  ++L N
Sbjct: 443 MDGGREHLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEISIADEGLGVPEEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       V+   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTVIKFTLP 600


>gi|86361054|ref|YP_472941.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86285156|gb|ABC94214.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 797

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 47/236 (19%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            + +   L        L     S   H+  +P+  I  + + L           L   + 
Sbjct: 547 TEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLCEKAD 606

Query: 58  MSAI----------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                                             S+  +IG+    Q             
Sbjct: 607 QIRSSVSRMLELMESILAAGRLDHGRITIVHKPCSIAEIIGICSARQESIRRSHRFLLDL 666

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++  NLF  A    P    V ++          +++  G      
Sbjct: 667 DRLPPTIFGDHPALDQVFSNLFSNAVKYAPDAPNVHVTGWQDGTSVCITVRDEGIGIDTD 726

Query: 162 EKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +        I    V  +   +   +       +    +  L 
Sbjct: 727 DLPKMFQRYFRARSSTGIAGTGIGLNLVKQIIELHGGTIEVASSRGNGTTFTLRLP 782


>gi|262382235|ref|ZP_06075373.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262297412|gb|EEY85342.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 846

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 65/233 (27%), Gaps = 22/233 (9%)

Query: 2   AKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +     L     +  L +   + + H+I +P+ AI     ++ E+  E E    + +  
Sbjct: 473 QREKEIELIKVKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAEIDDEVERQSYLDIIH 532

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +  + L+                  +   VD     G+I       +  D  +      
Sbjct: 533 KNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSDVDLIFDLDS 592

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             + +  +     +++ N    A     +G        +  +     +K  G      E 
Sbjct: 593 PSVIVKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE-GDFIRVCVKDTGIGI-SAEN 650

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +  +  ++      +       +      ++  +  +         L 
Sbjct: 651 QRRIFERFIKVDTFQQGTGLGLTISRTIIEALGGKIGVDSEEGGGSTFWFTLP 703


>gi|228921785|ref|ZP_04085101.1| hypothetical protein bthur0011_27810 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837867|gb|EEM83192.1| hypothetical protein bthur0011_27810 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 801

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKIQHNDISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQVSIRFIDEGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEMNKGTIVEVTLP 795


>gi|218246336|ref|YP_002371707.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
 gi|218166814|gb|ACK65551.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 8801]
          Length = 389

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 68/241 (28%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSM-------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + K +      +        L +   S + HD  +P+  I  S  LL++ G +    Q I
Sbjct: 142 LEKRVEERTKQLIKAQELNQLKSEFVSMLSHDFRNPMNTILLSAGLLEDSGDQLTREQQI 201

Query: 54  RLSSMSAIIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
               M                         ++  F      +    L    Q+       
Sbjct: 202 SYFQMIRTAIKDMDQLLSEILLLGKADAGKLQGHFEELDLEELCHRLLHSLQLSAHHNHE 261

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                       +   +    I+ NL   A    P GGKV   + + +NE IF ++  G 
Sbjct: 262 IIFQSKGEFSRGLWDEKLLRHIINNLLNNALKYSPEGGKVNFDLIEKENEVIFRVQDQGI 321

Query: 157 LARFP---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                   + F      +  + I    +    V      +   +L +  +      + +L
Sbjct: 322 GISPEAQKQLFQPFYRADNVNNIPGTGLGLAIVQKCVEAHYGTILVDSQEGIGTTFTVIL 381

Query: 214 E 214
            
Sbjct: 382 P 382


>gi|197122291|ref|YP_002134242.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|220917074|ref|YP_002492378.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196172140|gb|ACG73113.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|219954928|gb|ACL65312.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 502

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + +    A+  + + + H+I +P+  +  +LELL E   +D     I       + 
Sbjct: 265 RERMVRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDFSDDARHSDIVTEMQHQVR 324

Query: 63  --------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
                    L F R A     S D    L  +  +I           V      +     
Sbjct: 325 RLTHTMESLLSFARPAKAKLRSTDVNATLEKVLFLIRQQSRDGTLELVPELSPGLPAVLA 384

Query: 111 LSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +  ++ LN+ + A  ++       ++T+  +         ++  G      +   QI
Sbjct: 385 DPSQLEQVFLNICLNACQAMIATRRGGRLTVRSRAGDGTVSVEVEDTGPGI-PADLRAQI 443

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  + + +       +  E+   +      +     +  L+
Sbjct: 444 FKPFFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTTFTVTLQ 490


>gi|170738596|ref|YP_001767251.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium sp. 4-46]
 gi|168192870|gb|ACA14817.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium sp. 4-46]
          Length = 573

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/244 (8%), Positives = 65/244 (26%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI---HNSLELL------DEVGIEDEV 49
           +       + +  + +L  L + I H+I +P+  I     ++E L         G+ +  
Sbjct: 328 LKDAQAKLVQAAKMASLGELVAGIAHEINNPLAFILAHQGTVERLVGEVAEQAEGLPEPA 387

Query: 50  MQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93
            + +  +                          +      + +V   I         +  
Sbjct: 388 RRALAKARDRIGAMRLGLGRIQDLVVNLRKFSRLDEGEMRSVNVPDAIETVLALLQHKLG 447

Query: 94  IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
             +      +   E         ++++N+   A  ++P  G++T+        ++  +  
Sbjct: 448 TRIAVERLFAGEPEIRCTPALLNQVVMNIIGNAADAIPGEGRITVETLSEAENDVIRISD 507

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G          +I +    +        +       +   +   +  E           
Sbjct: 508 TGPGV-PEALRERIFEPFFTTKPVGSGTGLGLAIAYSVVQAHSGTISVETAPGGGACFVI 566

Query: 212 LLEK 215
            + +
Sbjct: 567 SIPR 570


>gi|23014024|ref|ZP_00053865.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 488

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 64/225 (28%), Gaps = 13/225 (5%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIR 54
            + +   L  S    AL  + + + H++ +P+  I N L  + +   +       +  I 
Sbjct: 254 KQRLERELAQSEKSAALGRIAAGVAHEVNNPLAGILNCLSTIKDHPEQPDLVTRYLPPIE 313

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109
                    ++ + +      + +       D  + +         + + W         
Sbjct: 314 KGLHRIRAIVQDLLVEQRAEHASELCGPECLDELRDLIIAEIEGAGITLDWDNRVHAPVQ 373

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  + +LNL   A  ++P GG +  S           ++  G      +    I D
Sbjct: 374 VNRPRLQQAVLNLLKNAAQAMPDGGCLKFSASLDGGLLRMEIEDTGIGIAEEDLR-HIFD 432

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               S      +  +  + L +     +          + S  + 
Sbjct: 433 PFFSSKKSGTGLGLWITLRLLNSMGGGVEVTSEPGKGSIFSLHVP 477


>gi|300853702|ref|YP_003778686.1| putative sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300433817|gb|ADK13584.1| predicted sensory transduction histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 376

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           +  +I   +   D   +L S I HD+ +PI +I   +E +LD V    E +Q    +  S
Sbjct: 123 LKNSIHMKMKYDDNRKMLVSSISHDLKTPITSIKGYVEGILDGVANTPEKLQHYLRTIYS 182

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------------- 105
              ++  M         +D      + E+        D   + S+               
Sbjct: 183 KSQQIDKMIDDLLLYSKLDLNQIPFNFEKTDIISYFTDCTQECSFELNKSNITISLKNNL 242

Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160
                 +       +++LN+   +   +      +I +   +N     ++    G     
Sbjct: 243 NKSKYVMIDRERFMRVVLNIINNSKKYMGDTKNGSILIDLRENNASIIIEIKDTGCGIDK 302

Query: 161 PEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +      +       +   +K ++     +     ++  L K
Sbjct: 303 NHINKIFDRFYRTDSARTETKGSGLGLAIAKQIVEGHKGKIWAVSEEGSGTSITISLPK 361


>gi|288818393|ref|YP_003432741.1| sensor histidine kinase [Hydrogenobacter thermophilus TK-6]
 gi|288787793|dbj|BAI69540.1| sensor histidine kinase [Hydrogenobacter thermophilus TK-6]
 gi|308751985|gb|ADO45468.1| histidine kinase [Hydrogenobacter thermophilus TK-6]
          Length = 329

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 67/216 (31%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69
             + + H++ +PI  I + LE + E   ++   +L+  +          +          
Sbjct: 111 FVANVSHELKTPIAIIKSILETIIEEEKDEGKRRLLERALKRTEDLRNIVEDLLIITKLE 170

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                       + + +  + D+ + I   I V+   +V    +      +   +LLNL 
Sbjct: 171 SGEEKLHKKMLNAKELVSVVFDMLREIAQNINVELINEVDENTKVYADEDKLNLLLLNLV 230

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTIDS 178
             A      GGKV +  +  K   I  +   G        P  F +      +    +  
Sbjct: 231 DNAIKYNKEGGKVVVKARTEKGYVILEVSDTGIGIPKEHIPFIFERFYRVDRSRSRELGG 290

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +A  +  ++  E  +         L 
Sbjct: 291 TGLGLSIVKHIALSHGGKVEVESKEGEGSTFRVYLP 326


>gi|229184875|ref|ZP_04312066.1| hypothetical protein bcere0004_24330 [Bacillus cereus BGSC 6E1]
 gi|228598528|gb|EEK56157.1| hypothetical protein bcere0004_24330 [Bacillus cereus BGSC 6E1]
          Length = 413

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISIEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404


>gi|157963903|ref|YP_001503937.1| histidine kinase [Shewanella pealeana ATCC 700345]
 gi|157848903|gb|ABV89402.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 706

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++ELL     D     +E ++L+
Sbjct: 446 LNETRQQLVINEKLTALGELTAGIAHEINNPTAVILGNMELLKYELGDRAADVEEEIELV 505

Query: 54  RLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                     ++ +                     +  +  + +       V    +++ 
Sbjct: 506 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIQKQQVVLNQELNA 565

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++   G++ I   D             ++  G    
Sbjct: 566 SYPIQVNRPQLLQVLINLVVNAAHAMNGKGQIWIRTYDWVQRGEPVGVKIEVEDEGKGIP 625

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E   +I D    +  D   +       +       +          + +  L
Sbjct: 626 EEELN-RIFDPFFTTRKDGTGLGLSLSYGIIKRIGGTIEVNSTVGKGSLFTIGL 678


>gi|118478027|ref|YP_895178.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam]
 gi|196043380|ref|ZP_03110618.1| sporulation kinase B [Bacillus cereus 03BB108]
 gi|225864628|ref|YP_002750006.1| sporulation kinase B [Bacillus cereus 03BB102]
 gi|118417252|gb|ABK85671.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam]
 gi|196025689|gb|EDX64358.1| sporulation kinase B [Bacillus cereus 03BB108]
 gi|225790003|gb|ACO30220.1| sporulation kinase B [Bacillus cereus 03BB102]
          Length = 422

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 252 RAQGIIDDYLTFAKPASEKLDEISIEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 413


>gi|91203081|emb|CAJ72720.1| similar to two component histidine kinase phoR [Candidatus Kuenenia
           stuttgartiensis]
          Length = 595

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 63/220 (28%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL-------- 64
             + + H++ +P+ +I   +E L E      G     +++I   +      +        
Sbjct: 364 FVANVSHELRTPLTSIRGYVETLLENYAAGGGHTYNSLKVIMKHTQRLDNLIKDILELSK 423

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILL 120
                +++        + +  +    +   +      R+ +S              ++L 
Sbjct: 424 LETNELKMELHELNIYECIEDILHTYKEHCEEKKQSFRLHISQNLPTVESNEYLLRQLLT 483

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A       G + +S+  ++      +   G      E   +I +           
Sbjct: 484 NLLDNAIKYTHESGDIRLSISPAEETIQIEVSDTGIGI-PHEHIPRIFERFYRIDPARSR 542

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V  + + +   +  +         + +L 
Sbjct: 543 EMGGTGLGLSIVKHIVNLHNGAIKLKSTVGKGSTFTVILP 582


>gi|314939996|ref|ZP_07847191.1| PAS domain S-box [Enterococcus faecium TX0133a04]
 gi|314950768|ref|ZP_07853844.1| PAS domain S-box [Enterococcus faecium TX0133A]
 gi|313597048|gb|EFR75893.1| PAS domain S-box [Enterococcus faecium TX0133A]
 gi|313640766|gb|EFS05346.1| PAS domain S-box [Enterococcus faecium TX0133a04]
          Length = 599

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ ++ + +E L      +  +    +++    +   I  +  +     
Sbjct: 369 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 428

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                         +   V+ ++   D+    ++     +R            + +  ++
Sbjct: 429 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 488

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T  + ++ N  + S+   G      +    F +    +    
Sbjct: 489 VDNIMNNAIKYSPDGGTITCRLLETHNNVVLSITDQGLGIPKKDLNRVFERFYRVDKARA 548

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       +   ++  +  E  +         L
Sbjct: 549 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 588


>gi|307635113|gb|ADI85671.2| sensor histidine kinase, HAMP domain-containing, nonconserved
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 496

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53
           + +     +   D L ++  + + I H+I +P+  I  ++ ++     E     E++  +
Sbjct: 254 LEQYHFQQMERADRLASVGEMAAGIAHEIKNPLAGISAAMTIIRQDFQEEDPRREIIGEV 313

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK 108
                     +  +      T    +   L D+        ++     +   ++      
Sbjct: 314 IEQVNRLDKTVNDLLFFGKPTHPEPAPTDLNDVLRKTLLFALQHKGGKNIEKRLELQEPL 373

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLARF 160
             +  +  ++   +  +   ++    +          I+ ++        +   G     
Sbjct: 374 PLVFVDPKQVQQVVLNLILNAIQAMQETGGTLTVASRIAEREGGLWVRVEVADTGPGI-P 432

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++I      +      +       L  ++   L    + +   V S  L 
Sbjct: 433 EPIISKIFTPFFTTKAQGTGLGLAICQKLITQHGGTLHVSSVLNQGTVFSIDLP 486


>gi|271968771|ref|YP_003342967.1| signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270511946|gb|ACZ90224.1| Signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 1051

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 62/235 (26%), Gaps = 25/235 (10%)

Query: 2   AKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMS 59
            +      L          S I H++ +P+  I   L ELLD+  +  +   ++R +  +
Sbjct: 307 RRTRELAELDDAKTA--FFSNISHELRTPLALILGPLQELLDDPSLGSDQHTVLRTARRN 364

Query: 60  AIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------- 104
           A+                +                 ++   F +  + V ++        
Sbjct: 365 AMRLLTLVNDVLDFTSVDSGRTRARYQPTDLTAQTAELAGVFRSSMESVGLTLRVEGEPL 424

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       +I+ NL   A      GG          +    ++   G      E  
Sbjct: 425 PEPVHLDRHMWERIVFNLLSNALKHTFAGGVTVGVRPGEGHAV-VTVSDTGVGIPGHEIP 483

Query: 164 --FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +     G+   + +   I       L   +  R+  +         +  L 
Sbjct: 484 NLFERFHRVSGSPSRSHEGTGIGLALARELIALHGGRIEADSRLGEGTTFTITLP 538


>gi|229013875|ref|ZP_04171003.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048]
 gi|228747544|gb|EEL97419.1| hypothetical protein bmyco0001_42840 [Bacillus mycoides DSM 2048]
          Length = 484

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +            V    +  + ++ +S  G ++      
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEEGIEVYLQLQS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   L+K
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478


>gi|229169400|ref|ZP_04297110.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621]
 gi|228614163|gb|EEK71278.1| hypothetical protein bcere0007_43500 [Bacillus cereus AH621]
          Length = 484

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +            V    +  + ++ +S  G ++      
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEEGIEVYLQLQS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   L+K
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478


>gi|229171431|ref|ZP_04299016.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3]
 gi|228612135|gb|EEK69372.1| hypothetical protein bcere0006_5590 [Bacillus cereus MM3]
          Length = 421

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 201 SEFLASVAHELRTPLTYVRGYADIALKENTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 260

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 261 QMEQHNFSIQVKEVYLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLLINLDEQRFEQVVV 320

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+    +   + ISV +       +++  G      +                  
Sbjct: 321 NILNNAYRHSQKHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 380

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 419


>gi|56422008|ref|YP_149326.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381850|dbj|BAD77758.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 609

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL-- 69
              + + H++ +P+  + + LE L +   +        +Q+++  +   I  +  +    
Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALADGAWQDKDIAPRFIQVVQNETERMIRLVNDLLHLS 438

Query: 70  ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRERAKILL 120
                                + +    +     ++                 +  ++L 
Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDNIRFVRKIPREAIFIEVDEDKITQVLD 498

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           N+   A    P+GG +T  V+   +E I S+   G      +    F +    +      
Sbjct: 499 NIISNALKYSPQGGTITFRVRKLADEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  E  +     +   L 
Sbjct: 559 LGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFTLP 597


>gi|69247565|ref|ZP_00604399.1| PAS [Enterococcus faecium DO]
 gi|257880369|ref|ZP_05660022.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257891027|ref|ZP_05670680.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257894280|ref|ZP_05673933.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|258614680|ref|ZP_05712450.1| sensory box histidine kinase VicK [Enterococcus faecium DO]
 gi|260562330|ref|ZP_05832844.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68]
 gi|293559840|ref|ZP_06676355.1| sensor protein YycG [Enterococcus faecium E1162]
 gi|314943533|ref|ZP_07850298.1| PAS domain S-box [Enterococcus faecium TX0133C]
 gi|314948949|ref|ZP_07852316.1| PAS domain S-box [Enterococcus faecium TX0082]
 gi|314994104|ref|ZP_07859421.1| PAS domain S-box [Enterococcus faecium TX0133B]
 gi|314998035|ref|ZP_07862927.1| PAS domain S-box [Enterococcus faecium TX0133a01]
 gi|68194789|gb|EAN09266.1| PAS [Enterococcus faecium DO]
 gi|257814597|gb|EEV43355.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257827387|gb|EEV54013.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|257830659|gb|EEV57266.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|260073254|gb|EEW61595.1| hypothetical protein EFXG_01820 [Enterococcus faecium C68]
 gi|291606204|gb|EFF35623.1| sensor protein YycG [Enterococcus faecium E1162]
 gi|313587965|gb|EFR66810.1| PAS domain S-box [Enterococcus faecium TX0133a01]
 gi|313591471|gb|EFR70316.1| PAS domain S-box [Enterococcus faecium TX0133B]
 gi|313597771|gb|EFR76616.1| PAS domain S-box [Enterococcus faecium TX0133C]
 gi|313644648|gb|EFS09228.1| PAS domain S-box [Enterococcus faecium TX0082]
          Length = 611

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 67/220 (30%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ ++ + +E L      +  +    +++    +   I  +  +     
Sbjct: 381 FVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSR 440

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                         +   V+ ++   D+    ++     +R            + +  ++
Sbjct: 441 MDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQV 500

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VE 173
           + N+   A    P GG +T  + ++ N  + S+   G      +    F +    +    
Sbjct: 501 VDNIMNNAIKYSPDGGTITCRLLETHNNVVLSITDQGLGIPKKDLNRVFERFYRVDKARA 560

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       +   ++  +  E  +         L
Sbjct: 561 RAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISL 600


>gi|328954079|ref|YP_004371413.1| GAF sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454403|gb|AEB10232.1| GAF sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 784

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAI 61
               L S  L A+  +   + H+I +P+ +I      + +    ED + Q + +      
Sbjct: 541 RERMLESDRLAAMSSMAEGLAHEIRNPLVSIGGFARRISKQVASEDPIRQYVDVIVDEVG 600

Query: 62  IRLKFMRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
              K +R  F        +    D    + D   +I+  +  D    V    E   +  +
Sbjct: 601 RLEKILRQMFDFTGDAIGHFQEHDLNKLVADALTLIQRDLDRDNIRVVKQYAELPLVFCD 660

Query: 115 RAK---ILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167
             +   +  ++F  A  ++  GG +TI               ++   G     PE    I
Sbjct: 661 DRQIKLVFYHIFQNAQQAMGSGGTLTIHTFPLEKSDGLYAAIAVSDTGGGI-PPELVHNI 719

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +   +   +         +  +  L 
Sbjct: 720 FNPFFTTKEMGTGLGLSIAQRIVARHYGDIEINNELGKGITFTVTLP 766


>gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
 gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator
           [Prevotella buccae ATCC 33574]
          Length = 869

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +    ++  L     + I H++ +P+  I + +E + +        + + L     
Sbjct: 348 MRRRLEEEATNAKL--QFFTNISHELRTPLTLIADPVEHIIDDNNLTRQQRNMLLIVRRN 405

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------------RVQVSWT 105
           +  L  +         + +      +                            +  +  
Sbjct: 406 VNVLTRLVSEILDFRKIQNGKMTLTLSDFDLAVYMRQWLDVFATTAGKKKISLELHAASP 465

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  +I  NL   A    P GG++T S     +     +   G      E   
Sbjct: 466 LSIRADIYKVERICYNLLSNAMKYTPEGGRITFSAVTEGDFVHIGVTDTGIGMTRDEAAH 525

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            I    V   A  +K  +  E         +  L 
Sbjct: 526 VFERFYQVRHPHKGGTGIGLAIVKSFAELHKGTVAVESEPGRGSTFTVTLP 576


>gi|229162131|ref|ZP_04290102.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803]
 gi|228621338|gb|EEK78193.1| hypothetical protein bcere0009_29090 [Bacillus cereus R309803]
          Length = 448

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  + S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELPK 448


>gi|262169261|ref|ZP_06036953.1| signal transduction histidine kinase [Vibrio cholerae RC27]
 gi|262022074|gb|EEY40783.1| signal transduction histidine kinase [Vibrio cholerae RC27]
          Length = 570

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 185 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 244

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 305 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 364 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTLYIP 428


>gi|255745823|ref|ZP_05419771.1| signal transduction histidine kinase [Vibrio cholera CIRS 101]
 gi|262153458|ref|ZP_06028589.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|255736898|gb|EET92295.1| signal transduction histidine kinase [Vibrio cholera CIRS 101]
 gi|262030759|gb|EEY49392.1| signal transduction histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 570

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 185 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 244

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 305 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 364 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTLYIP 428


>gi|229523471|ref|ZP_04412876.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis
           VL426]
 gi|229337052|gb|EEO02069.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis
           VL426]
          Length = 572

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|313500603|gb|ADR61969.1| Multi-sensor signal transduction histidine kinase [Pseudomonas
           putida BIRD-1]
          Length = 989

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          +  
Sbjct: 736 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREDDGEIIELSS 795

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++   +  S      + F      +          +       +  +      V     
Sbjct: 796 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 855

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +  A++L+NL   A  + P G  V +  + +++     ++  G+     
Sbjct: 856 CDPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVNEHTVDLIVEDEGSGIPKN 915

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 916 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 974


>gi|301309870|ref|ZP_07215809.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300831444|gb|EFK62075.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            KN   +L    + A           + + H+I +P+ AI    EL+     ++E M   
Sbjct: 384 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 443

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99
            +  M+  + ++ +      +                 + +  +    ++          
Sbjct: 444 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 503

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            + +        S    +++ NL   A  +   G           N+  F ++  G    
Sbjct: 504 EKGADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYVRDTGIGID 563

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   +   +       L  +    +            S +L 
Sbjct: 564 KDKLKDVFGRFVKINDYMEGIGLGLAICKGLVVKMGGSIHVTSELGVGSEFSFILP 619


>gi|266619603|ref|ZP_06112538.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288868825|gb|EFD01124.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 498

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +N    +        L S I HD+ +PI AI   +E + +      E +     +  +
Sbjct: 253 LKENAEEKIQYDKENKELISNISHDLKTPITAIKGYVEGIMDGVASSPEKLDRYIRTIYN 312

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102
               +  +     +   +D+        ++       D                     V
Sbjct: 313 KANDMDKLIDELTFYSKIDTNKIPYTFSKINVASYFRDCVDEVGLEMEARNIELGYFNYV 372

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I  + +  +++ N+   +   + +    + I ++D  +     ++ NG      
Sbjct: 373 DEDVMVIADAEQMRRVINNIVSNSVKYIDKKNGIINIRIKDVGDFIQIEIEDNGKGIAAK 432

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  R+     +     +  +L K
Sbjct: 433 DLPNIFDRFYRTDSSRNSSQGGSGIGLSIVKKIIEDHGGRIWATSKEGIGTEIHFVLRK 491


>gi|291612484|ref|YP_003522641.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291582596|gb|ADE10254.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 712

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 67/225 (29%), Gaps = 20/225 (8%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMS 59
           L +    A   +  R+ H+I +P+  I  S E L        +      + +  +     
Sbjct: 480 LQAERQAAWGEVARRLAHEIKNPLTPIQLSAERLQHKLLGKLDEHDSQLLQRATQTIVSQ 539

Query: 60  AIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                  +     Y         ++D    L ++  + E   +       +        +
Sbjct: 540 VAAMKNMVTEFANYARAPAARMVALDIHQLLNEVMGLYEANSSPITLQLNAHRTWLNGDA 599

Query: 113 RERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +++ NL   AH +L +     I   +   +       ++ NG+         ++ +
Sbjct: 600 TRLRQVIHNLLQNAHDALQQTEHPMIVLSTENTTNGTLKLIVRDNGSGIPEHMLG-RLFE 658

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +      +    V  +  E+  ++  E        +S  L 
Sbjct: 659 PYMTTKQKGTGLGLAIVKKIVEEHGGKITIESQPLAGTRISVELP 703


>gi|254480157|ref|ZP_05093405.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214039719|gb|EEB80378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 509

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 18/226 (7%), Positives = 55/226 (24%), Gaps = 28/226 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           +  + + H++ +P+ AI    E+L +   ++  +   +       I     +L       
Sbjct: 274 MFLANVSHELRTPLNAIIGYSEMLHDELSDEREVDRPQFQQDLDKIIRSGRQLLTLINDI 333

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI------------------ 118
           +D          +  +     + ++ +       L     ++                  
Sbjct: 334 LDLSKIETGKMALHCETFQPGELLEQACDSITPQLRERNNQLEKPDFESLPTLYNDAAKF 393

Query: 119 ---LLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV----- 168
                NL   A           +    ++       +++  G      ++          
Sbjct: 394 RQIFTNLLSNACKFTNAGYITVLATEPEEHPGWVEIAVRDTGIGMNEDQQSQVFEAFVQA 453

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D +  +      +               +  E    +    + LL 
Sbjct: 454 DASTSANYGGTGLGLAICRDYCQLMGGTIRVESQPGNGSTFTVLLP 499


>gi|111021713|ref|YP_704685.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
 gi|110821243|gb|ABG96527.1| sensor kinase, two-component system [Rhodococcus jostii RHA1]
          Length = 460

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 63/232 (27%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMS 59
           A       S   +     +   H++ +P+  I    EL  +  + D    M  I   +  
Sbjct: 228 ASEESARRSEEKMR-RFVADASHELRTPLTTIRGFAELYRQGAMTDTETLMSRIEGEASR 286

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEK 108
             + ++ + +               D+  V  D +   + V               T E 
Sbjct: 287 MGLLVEDLLMLARLDAQRPLETRPVDLLSVASDAVHGARAVAPDRSIALDVRPGPGTPEV 346

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
           I       ++L NL   A    P    VT+ +  ++   +  +   G      +    F 
Sbjct: 347 IGDEARLRQVLGNLLANAVKHTPATADVTVRLSTTERSVVLEVADTGPGLSEEDAARVFE 406

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +           +    V  L   ++  +  +            L +
Sbjct: 407 RFYRTDASRTRESGGSGLGLSIVAALVAAHRGSVTVDSRPGEGATFRVELPR 458


>gi|118581557|ref|YP_902807.1| multi-sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118504267|gb|ABL00750.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 587

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 58/227 (25%), Gaps = 26/227 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFM 67
            ++     + + H++ +P+  I    E L +  +     +   + + +    A      +
Sbjct: 356 EEMRRDFVANVSHELRTPVSVIKGYAETLMQNDMLVSEPEHATRFVEIIRRHAERLTTLI 415

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------------ 115
                 +        L      +   IA    +      EK                   
Sbjct: 416 NDILTLSCLEARNSALELNAMDVGTTIAKSCALLAPRAAEKKICLHNEVGNNLPRTLVDQ 475

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               ++L+NL   A    P GG + +  +  +     S++ +G      +   +I +   
Sbjct: 476 GRLEQVLVNLIDNAVKYTPEGGTIRLFAEQGETFLRISVQDSGIGIPPRDLP-RIFERFY 534

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                         +       +   +   L            S  L
Sbjct: 535 RVDEGRSREQGGTGLGLAIAKHIVQLHGGELTVTSTPGKGSTFSFTL 581


>gi|312879107|ref|ZP_07738907.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
 gi|310782398|gb|EFQ22796.1| PAS/PAC sensor hybrid histidine kinase [Aminomonas paucivorans DSM
           12260]
          Length = 540

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + + +       +      ++  + + H+I +P+  I   LELL +  ++ +  + +R+ 
Sbjct: 131 LREELLRAKEDAETANEAKSVFLASMSHEIRTPMNGILGMLELLRQTDLDPQQEEYLRIV 190

Query: 57  SMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIE-DFIAVDKRVQVSW 104
             SA   + F+     Y+              D +  +G + ++             +  
Sbjct: 191 RESAQTLMHFLNQVLEYSRLQANRTELESLDFDLMCTVGPLFELFALRAREKGLETVLDL 250

Query: 105 TGEKIDLSR----ERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGN 156
             +     R       +IL NL   A     +G           +D      F +   G 
Sbjct: 251 DPQVPPRVRGDPLRLRQILTNLLDNALKFTEKGWIALSIRRFPPEDGGLWLEFGVVDTGI 310

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                EK  +I  G                +    V  +       L  E  +       
Sbjct: 311 GI-PREKRHRIFQGFGQLDRSTTRRYGGSGLGLAIVRQMVSLWGGFLSLESEEGKGSSFH 369

Query: 211 ALLE 214
             L 
Sbjct: 370 VRLP 373


>gi|265763357|ref|ZP_06091925.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263255965|gb|EEZ27311.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 899

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +  +      S  L +   + + H+I +P+ AI     ++ E    +E  +   + 
Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +                    +     G V       +I             ++    
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQGVELRFDSP 613

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163
            E + +  ++ +I      +   +     +  V+   +      +F +K  G     PEK
Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQEGERVVFYVKDTGLGI-EPEK 672

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++        +      +       +       +            +  L 
Sbjct: 673 LGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|253565261|ref|ZP_04842716.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251945540|gb|EES85947.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 899

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +  +      S  L +   + + H+I +P+ AI     ++ E    +E  +   + 
Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +                    +     G V       +I             ++    
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQGVELRFDSP 613

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163
            E + +  ++ +I      +   +     +  V+   +      +F +K  G     PEK
Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQEGERVVFYVKDTGLGI-EPEK 672

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++        +      +       +       +            +  L 
Sbjct: 673 LGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|53713284|ref|YP_099276.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216149|dbj|BAD48742.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 899

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +  +      S  L +   + + H+I +P+ AI     ++ E    +E  +   + 
Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +                    +     G V       +I             ++    
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQGVELRFDSP 613

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163
            E + +  ++ +I      +   +     +  V+   +      +F +K  G     PEK
Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQEGERVVFYVKDTGLGI-EPEK 672

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++        +      +       +       +            +  L 
Sbjct: 673 LGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|288553298|ref|YP_003425233.1| sporulation kinase [Bacillus pseudofirmus OF4]
 gi|288544458|gb|ADC48341.1| sporulation kinase [Bacillus pseudofirmus OF4]
          Length = 619

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 69/221 (31%), Gaps = 8/221 (3%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56
           M       + S  L     L + I H+I +P+  +    +L +       D +M  +   
Sbjct: 392 MKNRDDLLIRSEKLALAGELAAGIAHEIKNPLTTLKGFFQLTESQLEPYRDVLMHELNQI 451

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEKIDLSR 113
           +      L   R        VD L  + +    I+       +   +Q+      +    
Sbjct: 452 NDIIEELLLVARPRAIKEEEVDLLNVIRESLTSIDTEIQLKNITLDLQLCDEAYLLCAPH 511

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  ++ +NL   A  ++   G ++I+V+         +K  G      +   ++ +    
Sbjct: 512 QLTQVFINLLKNAVEAMDNEGNLSINVKKVNQTIHIIVKDTGIGMTQEDL-ARLGEPYYS 570

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +     I       +   +   +    + +    +S  L 
Sbjct: 571 ISSKGTGIGLMVCYKVIENHGGSMSITSVCEVGTEVSIQLP 611


>gi|239904878|ref|YP_002951616.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239794741|dbj|BAH73730.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 404

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 71/234 (30%), Gaps = 30/234 (12%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE-----------------VGIEDEVM 50
            +  +    +L + + H++ +P+ AI    E L                         ++
Sbjct: 165 QAEKMATIGMLATGVAHEVNNPLTAIFGFAEGLRRRLPALKEKVDPRVMEDVEDYVATIL 224

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTG 106
           +  R         L F R       +V     + D  +++   +    +    V+V  + 
Sbjct: 225 RECRRCQDIVTTLLTFSRQKTVSFSAVSLNAVVNDTLKLLRSHLKQRNQAKITVRVDLSE 284

Query: 107 EKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +  +  +I   +  +   ++      G  +  + Q SK     S++ +G     PE
Sbjct: 285 NLPMVHGDEHQIKQVMLNLLVNAMDAITGPGRIIITTYQSSKGAVCLSVEDSGCGV-PPE 343

Query: 163 KFTQIVDGNVESTIDSHDIQ--FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +      I       + +  +++  +  +         +  L 
Sbjct: 344 NVDKLFEPFFTTKRSGKGIGIGLSTCMSIVKKHQGDITLKSTPGQGATFTVSLP 397


>gi|261420882|ref|YP_003254564.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319768553|ref|YP_004134054.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261377339|gb|ACX80082.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317113419|gb|ADU95911.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 609

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 21/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL-- 69
              + + H++ +P+  + + LE L      +  I    +Q+++  +   I  +  +    
Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALGDGAWQDKDIAPRFIQVVQNETERMIRLVNDLLHLS 438

Query: 70  ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRERAKILL 120
                                + +    +     ++                 +  ++L 
Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDNIRFVRKIPREAIFIEVDEDKITQVLD 498

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           N+   A    P+GG +T  V++  +E I S+   G      +    F +    +      
Sbjct: 499 NIISNALKYSPQGGTITFRVRELADEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  E  +     +   L 
Sbjct: 559 LGGTGLGLAIAKEVVVAHGGTIWAESKEHKGTTIYFTLP 597


>gi|218289023|ref|ZP_03493260.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240848|gb|EED08026.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 565

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQ 51
           +     +    L A+    + I H+  +P+  +   ++LL                  ++
Sbjct: 338 RRQAIRMHEERLAAVGQFAASIAHEFRNPLTTVMGFVQLLRSRLDELTPGAYEAIWGELE 397

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            ++  + S ++  K   +        +       + + +     V   +      + I  
Sbjct: 398 RMKDVTDSLMVLAKPEAVKPIPCDLAEMARSAISVCEPLALERGVPVDLGPLAPAQVIGH 457

Query: 112 SRERAKILLNLFMVAHA-SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  ++ ++L   A   +    G+V + +  ++ E I  ++  G           + + 
Sbjct: 458 PGQLRQMTVHLLRNAIEAASETNGRVILWLTATEAEAIVHIQDTGPGI-PEPLLEHLGEP 516

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
              +      +    V  +  E+   +     D      +   L K
Sbjct: 517 FYHTKEKGTGLGLMVVHRIVQEHGGEIRIRRTDHPRGTAVEVRLPK 562


>gi|205374548|ref|ZP_03227344.1| sensory box histidine kinase PhoR [Bacillus coahuilensis m4-4]
          Length = 527

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 62/216 (28%), Gaps = 23/216 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +PI +I    E L     ++    +  + ++   S      ++ +     
Sbjct: 300 FVANVSHELKTPITSIKGFSETLLDGALEDRDTLEYFLNIMLTESDRLQSLIQDLLDLSK 359

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                             L  +  + +   +   +  + +               ++ +N
Sbjct: 360 LEQHGFKLDVSTFDLSRLLEEVVLMLKGKAEEKEIQLQFEPIPELTLEGDMNRFKQVFIN 419

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A +    GG V + V++ ++E    ++ NG      E   +I +            
Sbjct: 420 LINNAISYTGPGGHVKVFVKEERDEITIKVQDNGVGIAASELP-RIFERFYRIDKARSRN 478

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    V  +   +   +  E  +        
Sbjct: 479 SGGTGLGLAIVKHIVEAHHGEIDVESSEGVGTTFIV 514


>gi|121535984|ref|ZP_01667777.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121305444|gb|EAX46393.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 583

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 70/238 (29%), Gaps = 24/238 (10%)

Query: 1   MAKNICF---NLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIR 54
           +A+++      L  +  +     + + H++ +P+  +H   + L +  I D  +  +  R
Sbjct: 341 LAQDMEEYVRRLEQLDKMRRDFVANVSHELRTPLTIMHGYNQALQDGTITDPALVKKYHR 400

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +     +   K +      +           + +     ++ V+       +   VS   
Sbjct: 401 VMGEEIMRLEKLIADLLDLSQLQANGLTLDIEEVSLAEIVDNVVTLLKPRSEEKGVSLAA 460

Query: 107 E-------KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                            ++ L L   A    P GG+++I +     E + ++   G    
Sbjct: 461 CVAPGVPPIQGDGDRLTQLALILVDNALKFTPPGGRISIDLTVQDGEEVLTVADTGTGIA 520

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    + +   G+         +       +   +  ++          V +    
Sbjct: 521 PEDLPYIWERFYKGDKSRASSGTGLGLAIARQIIELHGAKVDVTSRCGEGTVFTIRFP 578


>gi|170719924|ref|YP_001747612.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
 gi|169757927|gb|ACA71243.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida W619]
          Length = 991

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 73/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          +  
Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 797

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           ++++  +  S      + F      +          +       +  +      V     
Sbjct: 798 QILEQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +  A++L+NL   A  + P G  V +  + S++     ++  G+     
Sbjct: 858 CDPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRTEVSEHTVDLIVEDEGSGIPKN 917

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 918 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976


>gi|301163089|emb|CBW22638.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 892

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +  +      S  L +   + + H+I +P+ AI     ++ E    +E  +   + 
Sbjct: 494 MRRELIESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESDNAEERREYYEIV 553

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +                    +     G V       +I             ++    
Sbjct: 554 DANNERLLQLINEILDLSKIESGIVEFTYGPVRLHTLCKEIHDAHVFRCPQGVELRFDSP 613

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163
            E + +  ++ +I      +   +     +  V+   +      +F +K  G     PEK
Sbjct: 614 DEALSIHSDKNRIFQVFSNLIGNAFKFTTEGSVSYGYKQEGERVVFYVKDTGLGI-EPEK 672

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++        +      +       +       +            +  L 
Sbjct: 673 LGRVFQRFAKLNNFAQGTGLGLSICKTIIERLGGEIAVSSEVGTGTTFTFWLP 725


>gi|300864887|ref|ZP_07109733.1| periplasmic sensor Signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
 gi|300337111|emb|CBN54883.1| periplasmic sensor Signal transduction histidine kinase
           [Oscillatoria sp. PCC 6506]
          Length = 470

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 64/233 (27%), Gaps = 24/233 (10%)

Query: 6   CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54
             N  S  L +L        + + H++ +PI  +  ++E L      E  + D   Q + 
Sbjct: 237 ELNRMSERLASLDYERRTFLANVSHELRTPISNVLVTVEALRSGAVDEPELRDRFFQNVE 296

Query: 55  LSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-W 104
             +      ++ +                  V S +    +  V     A    V V   
Sbjct: 297 DETKRLSRLVRDLLDLGRLEAGVTQLEQQSLVLSSLINRAVGAVKPRMEARGVSVTVDVA 356

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       + +LN+   A        +V IS +    + +  ++  G      +  
Sbjct: 357 DIILFGDPERLLQAILNVLDNAIKHSLPDSEVMISGRKEGKQAVIKVEDQGPGISSSDLP 416

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F Q    +   +     +       +   +   +  E       + +  L 
Sbjct: 417 RIFEQFYTTDPSRSGSGTGLGLAIAKRIVEAHSGSITAESRIGKGAIFTICLP 469


>gi|228953435|ref|ZP_04115480.1| hypothetical protein bthur0006_28140 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228806174|gb|EEM52748.1| hypothetical protein bthur0006_28140 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 801

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTESENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + ++++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMNNIKIKIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++  +  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGNVFIESEVNKGTTVEVTLP 795


>gi|229080291|ref|ZP_04212816.1| hypothetical protein bcere0023_29380 [Bacillus cereus Rock4-2]
 gi|228702960|gb|EEL55421.1| hypothetical protein bcere0023_29380 [Bacillus cereus Rock4-2]
          Length = 801

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTESENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + ++++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMNNIKIKIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++  +  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGNVFIESEVNKGTTVEVTLP 795


>gi|332977098|gb|EGK13902.1| sensor histidine kinase BaeS [Desmospora sp. 8437]
          Length = 461

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 56/233 (24%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58
           M+K +     + +    L + + H++ +P+  +   LE + +    +  E +  ++   +
Sbjct: 210 MSKQLQ---QAEEARKNLVADVAHELRTPLTVLQGKLEWIQQRGQPVRPENLLPLQDELI 266

Query: 59  SAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                +  +                     V     +  I+   +      +    +   
Sbjct: 267 RLNRLVDDLHQLSLAEAKKLPLDQKPTDLPVLLRRIIDRIQPDADRKGVEIRLHCDAGIP 326

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++ LNL   A    P GG V + +   K      +   G           
Sbjct: 327 PISVDPNRITQVFLNLLTNALRYTPPGGSVKVDITKKKEGLQIQVSDTGVGIPPEHLPHL 386

Query: 167 IVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +           +   +  E   D        L 
Sbjct: 387 FNRFYRTDESRARNRGGMGLGLAIAKEFVLAHHGTIEVESAPDQGTTFIVELP 439


>gi|170697001|ref|ZP_02888097.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
 gi|170138175|gb|EDT06407.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
          Length = 1034

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 66/245 (26%), Gaps = 33/245 (13%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +   + + D       + L + + H+I +P+  I  +LELL+   ++      +  
Sbjct: 483 LVQQLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSALDATQHGRVHT 541

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              SA   L  +     ++      + +  I   +   +  +                  
Sbjct: 542 LRTSATSLLALVSDILDFSKIEAGAMSVESIAFDLTAAVERELNAFATIAKAKGVQLFCE 601

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155
              S T          A++L NL   A      G         ++          ++  G
Sbjct: 602 FHASSTQRMRGDPTRFAQVLRNLLSNALKFTDVGRVTVRVAVVAERHDAPELSVEVEDTG 661

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 E   ++ +        +        +       L      R+  E         
Sbjct: 662 IGI-AAEHRRKLFNAFSQVDTSITRRYGGTGLGLALCDRLVAAMGGRIAVESEPGFGSRF 720

Query: 210 SALLE 214
           S LL 
Sbjct: 721 SVLLP 725


>gi|219850106|ref|YP_002464539.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chloroflexus aggregans DSM 9485]
 gi|219544365|gb|ACL26103.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chloroflexus aggregans DSM 9485]
          Length = 860

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 63/242 (26%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           +    NL  ++ +A++   I HD  + +  I  +   L         +           +
Sbjct: 473 ERRLQNLERLESLAIMAGGIAHDFNNLLTVIEGNANFLKNAITATHPVDQYLQNLLTATQ 532

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +       L+F          +D    +     +++  +     +++        +  +
Sbjct: 533 QAGGLVEQLLRFAVADPLKLQQIDLNRLIEKAIPILQTTLKHPAVIRLDLDPALPPIRAD 592

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDS----------------------KNENIFSLK 152
             +I   L  +   ++    +    +                               S+ 
Sbjct: 593 PTQIRQVLLNLFMNAVDVLPEQNGCICIQTALRAIDANEFVGFISPHRLTSGKYVTMSVH 652

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG+         QI +    + +  H +    V+ +  ++   +  +         +  
Sbjct: 653 DNGHGIDPK-MQQQIFEPFFTTKVHGHGLGLPSVLNIVRQHGGAIEVKSRPGEGSTFTVW 711

Query: 213 LE 214
             
Sbjct: 712 FP 713


>gi|24376189|ref|NP_720233.1| sensor histidine kinase [Shewanella oneidensis MR-1]
 gi|24351236|gb|AAN57676.1|AE015903_8 sensor histidine kinase [Shewanella oneidensis MR-1]
          Length = 709

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 76/234 (32%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     +++  L AL  L + I H+I +P   I  ++ELL               D V
Sbjct: 452 LNETRQQLVTNEKLTALGELTAGIAHEINNPTAVILGNMELLRYELGDKAEVVKEEIDLV 511

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
           +Q +   S      L++ R            I     E ++    ++ K+      +++ 
Sbjct: 512 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHPITPIIEEMLVLVRHSIQKQEVVLITELNA 571

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
           +        +  ++L+NL + A  ++               QD        ++  G+   
Sbjct: 572 SCPVQVNRPQLLQVLINLVVNAAHAMDGKGRIWVRTYDWVQQDIAIGVKIEVEDEGSGI- 630

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+  +I D    +  D   +       +       +    +     + +  L
Sbjct: 631 EPEQLGRIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIEVSSVLGKGSIFTIGL 684


>gi|73661331|ref|YP_300112.1| two-component sensor histidine kinase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123734265|sp|Q4A159|WALK_STAS1 RecName: Full=Sensor protein kinase walK
 gi|72493846|dbj|BAE17167.1| two-component sensor histidine kinase [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 610

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 380 FVANVSHELRTPLTSMNSYIEALESGAWKDGELAPQFLSVTREETERMIRLVNDLLQLSK 439

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNL 122
                + +        +  + I     +            + T        +  ++  N+
Sbjct: 440 MDNESEQITKEIVDFNMFINKIINRHEMSAKDTTFVREVPTETIFTEIDPDKMTQVFDNV 499

Query: 123 FMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +         +K NG      +    F +    +      
Sbjct: 500 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRVKDNGIGIPINKVDKIFDRFYRVDKARTRK 559

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 560 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 598


>gi|150390625|ref|YP_001320674.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950487|gb|ABR49015.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 588

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 72/226 (31%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR--- 63
             + +   + + H++ +P+ +I   +E L     ++   +   + +I + +         
Sbjct: 360 EKMRSEFVANVSHELKTPLTSISGFIETLKSGAIEDEETKMRFLDIIDIETERLARLIND 419

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                        LA     + ++L  + ++   I    ++    QV      +  +++ 
Sbjct: 420 ILTLSEIENNHSHLAGQGIKTNEALKDVIEMMTPIAQNKSIRLGSQVELNLPILIGNQDW 479

Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++ +NL   A      GG+V IS     N  +FS+K  G      +   ++ +     
Sbjct: 480 FKQMFINLIDNALKYTSEGGRVQISAYKKYNHVVFSVKDCGVGIPKKDIP-RLFERFYRV 538

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +    V  +      R+              ++ 
Sbjct: 539 DKARTRKVGGTGLGLAIVKHIVLSLNGRIKVNSEVGKGTEFILIVP 584


>gi|329955945|ref|ZP_08296748.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525325|gb|EGF52375.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 867

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 18/227 (7%), Positives = 56/227 (24%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59
               L +  L +   + + H+I +P+ AI    +LL +          + ++ I ++   
Sbjct: 636 RDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLEAFSSEEVQQFVETININCTL 695

Query: 60  AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GE 107
            +  +                   S +    +  +       +     ++  +      +
Sbjct: 696 LLALINDILDLSRIESGTMDFQLSSYNLTFIMQQVYDSQRLSMPQGVELRTDFPEGTGKD 755

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +  S    +++ NL   A     +G        +        ++  G      ++    
Sbjct: 756 IVTDSVRLKQVVNNLINNARKFTAKGSITLGYSMEEPGYTTVFVEDTGAGISDEDQKHIF 815

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +      +       +       +               L
Sbjct: 816 ERFYKADSFTQGAGLGLSICQTIVERLHGTITVTSKLGRGTRFEVRL 862


>gi|295094340|emb|CBK83431.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 566

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 67/242 (27%), Gaps = 27/242 (11%)

Query: 1   MAKNI----CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
           M + +       +   +    L S I HD+ +PI  I   +E + +   +          
Sbjct: 263 MRQKLSDFTKAKMRYEEENRQLISNISHDLRTPITTIKGYVEGIMDGVADTPEKQERYLK 322

Query: 50  --------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDK 98
                   M  +                   +  SV              ++   + +  
Sbjct: 323 MIYSKANEMDSLINELSLYTNINNNAIPYEFHRVSVKDYFDDCMEEVYTTLLSKNMTLTY 382

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNL 157
           +       + I    +  +++ N+   A     +  G++ I++ D+  E   S+  NG  
Sbjct: 383 KNYCDDDVKVIVDPDQLKRVINNIITNAIKYTDKEYGQIDINIYDNDAEVKVSISDNGRG 442

Query: 158 ARF---PEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 P  F ++   +          +       +  E+   +           +   L
Sbjct: 443 IDSESLPHIFDRMYRADSARQSRGGSGLGLAICKKIVEEHGGNIYATSQLGVGTTIVFTL 502

Query: 214 EK 215
           +K
Sbjct: 503 KK 504


>gi|226941193|ref|YP_002796267.1| Sensor protein [Laribacter hongkongensis HLHK9]
 gi|226716120|gb|ACO75258.1| Sensor protein [Laribacter hongkongensis HLHK9]
          Length = 746

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 63/216 (29%), Gaps = 21/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLI--------RLSSMSAIIRLK 65
           + S I H++  P+ AI N     L L++E   +   ++          + +         
Sbjct: 512 MASGIAHELNQPLAAIVNYNQACLRLIEEDEPDFPTLRHALSATATQAQRAGEILKRLRA 571

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLN 121
           F+     +   VD    + D+  + E  +   +              I  + +  +++LN
Sbjct: 572 FVARQPIHLAPVDLNQVVKDVLALAEYDVRRHEVTVDTALSHDLPPIIADAIQLEQVVLN 631

Query: 122 LFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           L   A  ++               ++     ++  NG      E   ++ +    +    
Sbjct: 632 LLRNALDAIQTVAPWGRIHLATSHAEQHVRLTISDNGCGL--GEHADRMFEPFYTTKSSG 689

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +      R+          V +  L 
Sbjct: 690 MGLGLTICQTIIESFGGRIRAANQAAGGAVFTIELP 725


>gi|160891489|ref|ZP_02072492.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|317478405|ref|ZP_07937568.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156858896|gb|EDO52327.1| hypothetical protein BACUNI_03940 [Bacteroides uniformis ATCC 8492]
 gi|316905441|gb|EFV27232.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 388

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 65/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +A+    N       ++  + + H+I +P+ AI    ELL        + + +++++ ++
Sbjct: 144 LAREKAENADRSK--SVFLANMSHEIRTPLNAIVGFSELLASASTDEEKTQFLEIVQSNN 201

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 +             +   F        +  L    ++    +    ++    + 
Sbjct: 202 EMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMFDLEQQFRMRVAELGSGVQIVREASE 261

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           ++  +  +R    +++ N    A      G          +    F +K  G      + 
Sbjct: 262 KEYTMHTDRNRLAQVVSNFMTNALKFTQEGSITLGFRPY-EEGLYFYVKDTGTGIPQEKL 320

Query: 164 FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +   +   +       +  +    +  E  +         L 
Sbjct: 321 PHVFERFVKLKQEKNGTGLGLSICQTIVRKLGGEIGVESEEGAGSTFWFTLP 372


>gi|39998007|ref|NP_953958.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39984952|gb|AAR36308.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 487

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53
           + +     +   D L ++  + + I H+I +P+  I  ++ ++     E     E++  +
Sbjct: 245 LEQYHFQQMERADRLASVGEMAAGIAHEIKNPLAGISAAMTIIRQDFQEEDPRREIIGEV 304

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK 108
                     +  +      T    +   L D+        ++     +   ++      
Sbjct: 305 IEQVNRLDKTVNDLLFFGKPTHPEPAPTDLNDVLRKTLLFALQHKGGKNIEKRLELQEPL 364

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLARF 160
             +  +  ++   +  +   ++    +          I+ ++        +   G     
Sbjct: 365 PLVFVDPKQVQQVVLNLILNAIQAMQETGGTLTVASRIAEREGGLWVRVEVADTGPGI-P 423

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++I      +      +       L  ++   L    + +   V S  L 
Sbjct: 424 EPIISKIFTPFFTTKAQGTGLGLAICQKLITQHGGTLHVSSVLNQGTVFSIDLP 477


>gi|328954299|ref|YP_004371633.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454623|gb|AEB10452.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 591

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 65/221 (29%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +PI +I   +E L      E       + ++   +      ++ +     
Sbjct: 369 FVANVSHELRTPITSIKGFVETLQSGAIYEPDNAVHFLNIMARQADRLNQIIEDLLTLSR 428

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KIL 119
                +        + +     A  +  +V    ++I +S                 + +
Sbjct: 429 IEQEEEEGKVTLTWKPLKTVLQAAIQVCEVRAAEKQITISLSCPDNLQARINPPLLEEAV 488

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A    P    V ++ + +  + +  ++  G      E   ++ +          
Sbjct: 489 VNLIDNAIKYSPPETAVAVTAEPATEKVLIRVRDQGRGIAL-EHLPRLFERFYRVDTSRS 547

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +    V  +A  +   +  +       V +  L 
Sbjct: 548 RKVGGTGLGLAIVKHIAQAHDGWVTVDSTLGQGSVFTLHLP 588


>gi|171061038|ref|YP_001793387.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170778483|gb|ACB36622.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 589

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 54/231 (23%), Gaps = 23/231 (9%)

Query: 6   CFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
                S +       + I H++ +P+ +I    EL+++   + +      +   +A    
Sbjct: 355 EARAQSANHAKTEFLAAISHELRTPLTSIRGFAELMEKRIEQPKFKDQAGMIRRAAEHLN 414

Query: 65  KFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEK 108
             +                    V     +           A        ++        
Sbjct: 415 ALLTQILDFAKIEAGAMRVGATPVAIRPLVRGTADFFAVSAAEKGLELRVQIADDVPETL 474

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165
           +       ++L NL   A       G V I V+    +    +   G      +    F 
Sbjct: 475 LTDELRLKQVLNNLLSNAMKFTAG-GHVAIEVERDATQLRLHVVDTGPGIPAEQHELIFE 533

Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +         +       LA      L            +  L 
Sbjct: 534 RFRQADSQVAHQHGGTGLGLALSRSLAELMGGTLGVTSTPGEGARFTLTLP 584


>gi|167760295|ref|ZP_02432422.1| hypothetical protein CLOSCI_02668 [Clostridium scindens ATCC 35704]
 gi|167662178|gb|EDS06308.1| hypothetical protein CLOSCI_02668 [Clostridium scindens ATCC 35704]
          Length = 250

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 66/237 (27%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLC-------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + + +  +    +L+  L        S I H+I +P+  ++++L+L++    E       
Sbjct: 10  LQQIMAESPQKKELLTRLLESHRVDISTISHEIRNPLTLVYSTLQLIESQHPEVLTFHHW 69

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109
                      + +     Y           D    +           V    E      
Sbjct: 70  EGMRQDIEYMKQLLEQLSSYNNGERLECAATDARTFLRKIALSFASTLVDSQIEFTSRIP 129

Query: 110 -------DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNL 157
                      +  ++LLNL   A  ++        +           + + ++   G  
Sbjct: 130 ATLPSISIDPMKMKQVLLNLLKNAKDAVLSCPDRDNAAISLTAAFQNQQVVITISDTGCG 189

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  T I +  +    +   +       +A  +   L  E + D   V +  L 
Sbjct: 190 IAPEDLST-IFEPFMTHKQNGTGLGLAIAKRIASAHHGSLTVESVLDKGTVFTLTLP 245


>gi|329928573|ref|ZP_08282440.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
 gi|328937689|gb|EGG34098.1| signal transduction histidine-protein kinase BarA [Paenibacillus
           sp. HGF5]
          Length = 559

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 68/241 (28%), Gaps = 31/241 (12%)

Query: 3   KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       ++ A       + + H+I +P+  +   ++LL +  ++DE  +   +   
Sbjct: 153 QELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQDEQREYATIIRN 212

Query: 59  SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQV 102
           SA   +        F ++  G     +    L    Q +              +   ++ 
Sbjct: 213 SADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYFIED 272

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLA 158
                         ++L+NL   A      GG   +      ++++    F++K  G   
Sbjct: 273 QIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGI 332

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +   ++          +        +       L       +  +  +         
Sbjct: 333 SSKKL-DRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFT 391

Query: 213 L 213
           +
Sbjct: 392 I 392


>gi|303241662|ref|ZP_07328160.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
 gi|302590777|gb|EFL60527.1| multi-sensor signal transduction histidine kinase [Acetivibrio
           cellulolyticus CD2]
          Length = 606

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 63/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ +I +  E L     ++       + +I   +      +K +     
Sbjct: 374 FVANVSHELRTPLTSIKSYSETLMDGALEDKETAYRFLNVINSEADRMTRLVKDLLQLSR 433

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                       +         +  IE   ++   V +   +    E         +++L
Sbjct: 434 LENEQMQWNMQPFCFESLVRSSVEKIELSAKEKRQVIECFSIGDKPEVYADKDRIEQVVL 493

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VEST 175
           N+   A    P  GK+T+ +    ++    +  +G      +    F +    +      
Sbjct: 494 NVLTNAIKYTPDKGKITVYIGKMYSDAYVKVVDSGIGIPEEDIKRVFERFYRVDKARSRE 553

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +K  +           +   L 
Sbjct: 554 MGGTGLGLSIAKEIIEAHKGSISISSQLGKGTEVIVRLP 592


>gi|261409327|ref|YP_003245568.1| histidine kinase [Paenibacillus sp. Y412MC10]
 gi|261285790|gb|ACX67761.1| histidine kinase [Paenibacillus sp. Y412MC10]
          Length = 559

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 68/241 (28%), Gaps = 31/241 (12%)

Query: 3   KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       ++ A       + + H+I +P+  +   ++LL +  ++DE  +   +   
Sbjct: 153 QELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQDEQREYATIIRN 212

Query: 59  SAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQV 102
           SA   +        F ++  G     +    L    Q +              +   ++ 
Sbjct: 213 SADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIED 272

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLA 158
                         ++L+NL   A      GG   +      ++++    F++K  G   
Sbjct: 273 QIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIGI 332

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +   ++          +        +       L       +  +  +         
Sbjct: 333 SSKKL-DRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFT 391

Query: 213 L 213
           +
Sbjct: 392 I 392


>gi|49480108|ref|YP_037335.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49331664|gb|AAT62310.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 458

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIQGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|75910540|ref|YP_324836.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704265|gb|ABA23941.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 759

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 76/241 (31%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +   F    ++ +  L S I HD+ + +  I    +LL     D       +++++ +++
Sbjct: 381 EAQLFRTQRLESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTQHLLEILEINA 440

Query: 58  MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                 +K +            ++     + ++ +++++       V      +   +S 
Sbjct: 441 KRGADLVKQVLSFARGVEGKRITLQLKHLIVEVVKILKETFPKSIEVYTDIPNDLWMVSG 500

Query: 114 ER---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155
           +     ++L+NL + A  ++P GG                         +  + ++   G
Sbjct: 501 DSTQLHQVLMNLCVNARDAMPNGGTLTISAENLLIDENYARMNLEAKQGHYIMVTVSDTG 560

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I +    +        +    V+ +   +   +     +         L
Sbjct: 561 VGI-SPENLDRIFEPFFTTKAVGQGTGLGLSTVLGIVKSHGGFVNVYSEEGRGTTFKVYL 619

Query: 214 E 214
            
Sbjct: 620 P 620


>gi|229138689|ref|ZP_04267271.1| hypothetical protein bcere0013_18030 [Bacillus cereus BDRD-ST26]
 gi|228644808|gb|EEL01058.1| hypothetical protein bcere0013_18030 [Bacillus cereus BDRD-ST26]
          Length = 351

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 346


>gi|222095608|ref|YP_002529665.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221239666|gb|ACM12376.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 351

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 346


>gi|242279658|ref|YP_002991787.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242122552|gb|ACS80248.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 498

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 66/229 (28%), Gaps = 16/229 (6%)

Query: 2   AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
            + +   L  +  L       + + H+I  P+  I    +L  +     + +++      
Sbjct: 261 RQELEQQLRQADRLAKIGQFSAGVAHEINEPLANILGYAQLALQTPELPDQVRMDLDNIV 320

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKI 109
                +       + F R         D    + D  ++           ++  +  +  
Sbjct: 321 DSSLHAREIIKKIMFFSRQLPPQFIPTDLNQTIRDALRITGTAAKRGNIEIRCEFDEKLP 380

Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 R   ++++NL   A  ++  GG +TI      N+    +  NG      +    
Sbjct: 381 LVSADPRHIKQVIVNLAANAIQAMDEGGVLTIKTLSDGNDVYIIVDDNGPGIHADDLKQI 440

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +D    +    V+ +   +K  +  +    H       L 
Sbjct: 441 FNPFFTTKDVDKGTGLGLSVVLGIVKAHKGLIQVQSEYGHGTSFEIALP 489


>gi|119492435|ref|ZP_01623756.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC
           8106]
 gi|119453101|gb|EAW34270.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC
           8106]
          Length = 377

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIED--EV 49
           + +++  +   ++  A + S   HD+  P+  I    ELL         +E   E    +
Sbjct: 147 LNQDLAHSNQELEQFAYIAS---HDLQQPLQTITGFAELLLSLKSEIILEEEADEYVTPI 203

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           ++            L++ R+             +   E +     ++++   +       
Sbjct: 204 LEEGIRMQGLIKNLLEYSRVGTKRQELQPIDCNIILAETLKNLHHSIEESQAIITHKTLP 263

Query: 110 DLSRERAKILLNLFM---VAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++ ++   L                 +VTI+ +    E IF ++ NG      + F
Sbjct: 264 TVKADKIQLGQLLQNLISNGIKYCRPGIIPQVTITTEQKPQEWIFIIQDNGIGI-KSDYF 322

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I                 I       +   +  ++  E            L 
Sbjct: 323 ERIFQVFQRLHTVQDYPGTGIGLAICKKIVERHGGKVWVESEFGVGTTFYFTLP 376


>gi|152976031|ref|YP_001375548.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152024783|gb|ABS22553.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           cytotoxicus NVH 391-98]
          Length = 506

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 59/228 (25%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E     +  + S 
Sbjct: 275 LKETKKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLKPEISEQNKWYIDVMLSE 334

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKID 110
            +             +      I    I+ +I           I     + +  T    +
Sbjct: 335 IS-QMESITSQFMAMSKPQVLSIDFHQIQTLIEEVVTFILPTAIMHSVHIIMDHTAVIPE 393

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQ 166
           +  +  ++      +   ++            ++          +   G          +
Sbjct: 394 IQCDGNQLKQVFINILKNAIEAMPDGGNIFIQTEALDSEFICIRIIDEGCGIPENRIS-R 452

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +           +       +  E++ +L      ++   +   L 
Sbjct: 453 LGEPFYSLKEKGTGLGLMICYKIIEEHQGKLQILSEVNNGTTVEIYLP 500


>gi|89099323|ref|ZP_01172200.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89085932|gb|EAR65056.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 497

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 12/218 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            L  ++LV  L +   H+I +P+  I   ++LL E     +     ++         + +
Sbjct: 278 ELQKLELVGTLAASTAHEIRNPLTGIKGLVQLLSEKYTHSDDQYFFKVIDTEISRINEIV 337

Query: 68  RLAFGYTGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                                     +   E                          +  
Sbjct: 338 SEFLILGKPAALKLEKINLKEIISDLIPLFESEASLADVQCTYHLPDNPAIAEGTQDQLK 397

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++LLNL   A  ++P GG+++IS+      +   L+  G+  R  +   ++      S  
Sbjct: 398 QVLLNLAKNAFEAMPDGGRLSISLHTGGKWHSIILEDTGSGIREEDL-EKVFTPFFTSKD 456

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +       +      +       LL 
Sbjct: 457 MGTGLGLVVCQRIIESFGGSITISSRVNEGTKAEILLP 494


>gi|15641456|ref|NP_231088.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121588029|ref|ZP_01677780.1| sensor histidine kinase/response regulator [Vibrio cholerae
           2740-80]
 gi|153817899|ref|ZP_01970566.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|153822685|ref|ZP_01975352.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227081617|ref|YP_002810168.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229504980|ref|ZP_04394490.1| signal transduction histidine kinase [Vibrio cholerae BX 330286]
 gi|229511351|ref|ZP_04400830.1| signal transduction histidine kinase [Vibrio cholerae B33]
 gi|229518469|ref|ZP_04407913.1| signal transduction histidine kinase [Vibrio cholerae RC9]
 gi|229607983|ref|YP_002878631.1| signal transduction histidine kinase [Vibrio cholerae MJ-1236]
 gi|254848565|ref|ZP_05237915.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|298498476|ref|ZP_07008283.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|298499372|ref|ZP_07009178.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|9655945|gb|AAF94602.1| sensor histidine kinase/response regulator [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547724|gb|EAX57816.1| sensor histidine kinase/response regulator [Vibrio cholerae
           2740-80]
 gi|126511526|gb|EAZ74120.1| sensor histidine kinase/response regulator [Vibrio cholerae NCTC
           8457]
 gi|126519805|gb|EAZ77028.1| sensor histidine kinase/response regulator [Vibrio cholerae B33]
 gi|227009505|gb|ACP05717.1| sensor histidine kinase/response regulator [Vibrio cholerae M66-2]
 gi|229345184|gb|EEO10158.1| signal transduction histidine kinase [Vibrio cholerae RC9]
 gi|229351316|gb|EEO16257.1| signal transduction histidine kinase [Vibrio cholerae B33]
 gi|229357203|gb|EEO22120.1| signal transduction histidine kinase [Vibrio cholerae BX 330286]
 gi|229370638|gb|ACQ61061.1| signal transduction histidine kinase [Vibrio cholerae MJ-1236]
 gi|254844270|gb|EET22684.1| sensor histidine kinase/response regulator [Vibrio cholerae MO10]
 gi|297541353|gb|EFH77404.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
 gi|297542809|gb|EFH78859.1| sensor histidine kinase/response regulator [Vibrio cholerae MAK
           757]
          Length = 572

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|327403132|ref|YP_004343970.1| histidine kinase [Fluviicola taffensis DSM 16823]
 gi|327318640|gb|AEA43132.1| histidine kinase [Fluviicola taffensis DSM 16823]
          Length = 386

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 76/219 (34%), Gaps = 14/219 (6%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             + ++  + + I H++ +P+G+I    +L+ +   +   +   +    +AI   + ++ 
Sbjct: 166 DRLKVLGEITAGIAHELNTPLGSILGFSQLIIDDSKDSSTLADAQKIVHAAIHAREVVKK 225

Query: 70  AFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
              ++  +                +  +     +     ++      I +  +     ++
Sbjct: 226 LMYFSCELPQRFEFVSLQAVVNDTVLLIKPSLESKKIDWKMRLDKNPILVQLDTVQITQV 285

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-- 176
           + NL   A  + P+ G++ I V D        ++  G      E  TQI +    +    
Sbjct: 286 VFNLINNALHASPKEGQILIEVCDKGENAELIIQDFGIGM-SEETVTQIFEPFFTTKELG 344

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +    V  +   +K  +  +   +   V   +L K
Sbjct: 345 EGMGLGLSVVHGIVKSHKGSIFVKSKVNEGTVFRIVLPK 383


>gi|229124238|ref|ZP_04253430.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201]
 gi|228659540|gb|EEL15188.1| hypothetical protein bcere0016_45230 [Bacillus cereus 95/8201]
          Length = 484

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 63/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +     +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVKADCEKINRVISNLIHNSVKYTDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|73748463|ref|YP_307702.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73660179|emb|CAI82786.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 852

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 70/226 (30%), Gaps = 17/226 (7%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62
              + +  L +L  L + + H++ +P+ ++    EL+ E  + +++ Q I++ S  A   
Sbjct: 622 AQLMITDRLASLGELSAGLAHELNNPLTSVIGFSELIQEKILPEDLRQDIQIISQEAQRA 681

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRER 115
                  L F R        VD    +  +  +        + ++  +      ++  + 
Sbjct: 682 AEIIRNLLTFARRHEPSKDWVDMNQIIHKVLAICNYGQKVHNIQLITNLDPNLPEIKADY 741

Query: 116 AKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++   L  +   +     +        IS +   +    S++ +G              
Sbjct: 742 FQMQQVLLNIVINAEYFMTQSHGEGTIVISSRKFNDSIQISIRDDGPGMSENVLNHIFDP 801

Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     +       +  ++  +L  E  +         + 
Sbjct: 802 FFTTKEVGKGTGLGLSIGHGIITQHGGKLYAESSEGKGATFFIEIP 847


>gi|86140888|ref|ZP_01059447.1| sensory box sensor histidine kinase [Leeuwenhoekiella blandensis
           MED217]
 gi|85832830|gb|EAQ51279.1| sensory box sensor histidine kinase [Leeuwenhoekiella blandensis
           MED217]
          Length = 358

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 66/234 (28%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLC------SRICHDIISPIGAIHNSLELLDE--------VGIED 47
            +N       M+    L       + I H++ +P+  I    ELL +            D
Sbjct: 126 KQNAARLRQQMEHADRLAIIGELTAGIAHELNTPLANILGFAELLKDDLEENTAAGADLD 185

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VS 103
           ++++    S       + F R        V+ +  + +   +++     +          
Sbjct: 186 KIIKNAIFSREVVKKLMFFSRAMPQEKTLVNIVPQVKEAINLLDATFRKENVRYSVDIED 245

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   + +  +IL NL + A    P  G V I V          +   G      E 
Sbjct: 246 EEMLLHVDTVQLTQILFNLTINAIYFSPPDGLVQIRVSQDAKNIYLEIFDEGPGL-SEEG 304

Query: 164 FTQIVDGNVESTIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++      +        +    V  +   +   +  +  +    V    L K
Sbjct: 305 LEKVFQPFFTTKPTGSGAGLGLSVVHGIVTSHNGSISAKNNETKGAVFKVSLPK 358


>gi|302036582|ref|YP_003796904.1| sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604646|emb|CBK40978.1| Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 765

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 68/231 (29%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           +++   + +    A   +  RI H+I +P+  I  S + L +         +    +  +
Sbjct: 535 EDLSELIKAQKAAAWREVAQRIAHEIKNPLTPIQLSAQRLRKKFQDKAPDFDRICDESTQ 594

Query: 55  LSSMSAIIRLKFMR------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +         + +              +V+SL  +      + D    +    V+   + 
Sbjct: 595 VIINEVGSLKQMLDEFSKFARMPAPHMTVNSLDDVVKEVVALYDSAHREVECVVTLDPDL 654

Query: 109 IDLSRERAKILL---NLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              + +R +I     NL      ++       +T      +   + ++   G     PE 
Sbjct: 655 PLFNFDREQIKRVLVNLCDNGIHAMNHKGHLWITTRYDTKQRRAVVTVADEGTGI-APED 713

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++             +    V  +  ++  ++          + +  L 
Sbjct: 714 QEKLFVPYFSRKKTGTGLGLAIVRRIVTDHDGQIHAGNHQPKGALFTFELP 764


>gi|229194968|ref|ZP_04321749.1| hypothetical protein bcere0001_5470 [Bacillus cereus m1293]
 gi|228588536|gb|EEK46573.1| hypothetical protein bcere0001_5470 [Bacillus cereus m1293]
          Length = 463

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 56/219 (25%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++  +     E                +          
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
           ++           + L      I    + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKSISIAIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|158321190|ref|YP_001513697.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
 gi|158141389|gb|ABW19701.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
          Length = 474

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 66/224 (29%), Gaps = 18/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
               L   L S I H++ +P+  + + +E + +       + +++ +      I  +  +
Sbjct: 247 EQELLRKRLTSDISHELRTPLTILQSHIEAISDGVWEPTQDKLEICKAEVHRLIKLVDEL 306

Query: 68  RL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +                      L  +    Q       V     +    E      +  
Sbjct: 307 KHLTDIENHQLDLEIHRYCLSKDLNEVVTSFQYQFQEKGVLLNRNIKENIEIYGDKNKIR 366

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173
           + ++NL   A      GG VT+ + ++++E    +K  G      +    F +   G+  
Sbjct: 367 QAVVNLISNAFKFTSSGGTVTVELLENQDEVEIVVKDTGMGIDQQDIPYVFERFYRGDAS 426

Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    I       L   +   ++ E   +        L K
Sbjct: 427 RNRKTGGAGIGLSITKTLVEAHGGNIIVESEKNKGTKFIIRLPK 470


>gi|78223629|ref|YP_385376.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
 gi|78194884|gb|ABB32651.1| Hpt sensor hybrid histidine kinase [Geobacter metallireducens
           GS-15]
          Length = 827

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  +     + + H+I +P+ AI    +LL E  +  +  +L+  SS +A
Sbjct: 314 LVQAREEAEEANRVKGEFLATMSHEIRTPMNAIIGINQLLQETHLSQQQRRLVDDSSNAA 373

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSW 104
              L  +     ++      + L D                  +   + I++   V    
Sbjct: 374 ESLLTIINDILDFSRVEARRLELSDEALELRSFVESLRRLFAVKAERENISLSILVGDEA 433

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPE 162
                       ++L NL   A    P GG+VT       +    +F++   G      +
Sbjct: 434 PQFICGDPARLRQVLTNLLSNAIKFTPTGGRVTLAADADPAGGNLLFTVSDTGIGI-EKD 492

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           K  +I +                 +       L       +  E       V   LL 
Sbjct: 493 KHERIFEMFRQADSSTTRNYGGTGLGLAITRGLVELMGGTIEVESEAGKGAVFRVLLP 550


>gi|17232665|ref|NP_489213.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134311|dbj|BAB76872.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 965

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 25/258 (9%), Positives = 66/258 (25%), Gaps = 46/258 (17%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
           K+I        L     S + H++ +P+ +I  +L+LL              ++ +   +
Sbjct: 434 KDISDRREVERLKDEFVSVVSHELRTPLTSISGALDLLASGVVPAGSEDAQRMLNIAANN 493

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106
           +   +      + +    +G +       +   ++   + V + +             + 
Sbjct: 494 TDRLVRLINDILDIERIESGKIQIAPQACNAADLMTQSVEVMEELAEQAGIQLSMSPLSA 553

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-------------------------GGKVTISVQ 141
                S    ++  NL   A    P                            +  I + 
Sbjct: 554 HLWADSDRIIQVFTNLISNAIKFSPTGATVWVTAKILEKGELEKSQTPIPLYPQTPIPLY 613

Query: 142 DSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIR 196
                 +F++K  G      +    F +    +           +       +   +  +
Sbjct: 614 PHTPIILFAVKDQGRGIPADKLESIFERFGQVDASDSRKKGGTGLGLAICRSILQHHGGQ 673

Query: 197 LLPEIIDDHNVVLSALLE 214
           +  E         S  L 
Sbjct: 674 IWAESTSGEGSTFSFTLP 691


>gi|219667311|ref|YP_002457746.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfitobacterium hafniense DCB-2]
 gi|219537571|gb|ACL19310.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfitobacterium hafniense DCB-2]
          Length = 638

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 72/221 (32%), Gaps = 13/221 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K +   L  +DL+  + + I H+I +P+  +   L+ + +     + ++  +L     
Sbjct: 411 LEKEMA-RLERLDLIGQMAAGIGHEIRNPMTTVRGYLQYISKKDKYADEIETFQLMIEEL 469

Query: 61  II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         +   + F        +  L  I  V          + +    E   
Sbjct: 470 DRANEIITEYLSLSQDRVVDFKRINLNTIIQHLYPILSVHTKMEDKSIELNLGSLPELYL 529

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +E  +++LNL      ++P  GK+TIS    +   I  ++  G      E   ++   
Sbjct: 530 DKKELCQLILNLVRNGLEAMPIKGKLTISTYIQQGNVILEVEDQGRGI-PNEIKDKVGTP 588

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              + ++   +       +A  +   +  +        +  
Sbjct: 589 FFTTKLNGTGLGMAICYSIAERHNALIDLQSGP-QGTKVRV 628


>gi|229029685|ref|ZP_04185760.1| hypothetical protein bcere0028_17720 [Bacillus cereus AH1271]
 gi|228731627|gb|EEL82534.1| hypothetical protein bcere0028_17720 [Bacillus cereus AH1271]
          Length = 345

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 112 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 168

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +       + +          +    +   L        +  + +  +K +++    EK+
Sbjct: 169 TTRLSKLSQNLLKLTLLESEEYTPEKTTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 228

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +      GG +TI +Q+ +      +  +G      +    
Sbjct: 229 HITADRESMSQVWINLIHNSIKFTSSGGTITIQLQEHEKVVEVRISDSGIGISEEQKQHI 288

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 289 FERFFKADSSRNRAYGGSGLGLAIVKKVVDLHQGEIKVESEEGNGTEFIVCIP 341


>gi|229092208|ref|ZP_04223389.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42]
 gi|228691199|gb|EEL44963.1| hypothetical protein bcere0021_29980 [Bacillus cereus Rock3-42]
          Length = 448

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           ++  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 NIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|253702488|ref|YP_003023677.1| histidine kinase [Geobacter sp. M21]
 gi|251777338|gb|ACT19919.1| histidine kinase [Geobacter sp. M21]
          Length = 468

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 66/249 (26%), Gaps = 36/249 (14%)

Query: 1   MAKNICFNLSSMD----------------LVALLCSRICHDIISPIGAIHNSLELLD--- 41
           +A+N+   +  +                  V  L + I H+I +P+  I  +++ L    
Sbjct: 217 LAENLNEMVEKLKEKEQLEKRLYEAEHLSKVGQLAAGIAHEIRNPLNYISLAIDHLKSES 276

Query: 42  -----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVI 90
                E   E E +       +     +    + +G    +              ++ + 
Sbjct: 277 LPSCPEKAKELESIANNIKEEVRKANYMVLNFMNYGRPLKLRLQRVCYPELVDKAMQLMK 336

Query: 91  EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNE- 146
           +        V          +  +   +   L      +  ++P GGK TI    +    
Sbjct: 337 DRLDERGIEVVRDIPEYLPPMLADPELMRNCLCNFISNSTQAMPEGGKFTIGASIAPETG 396

Query: 147 -NIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
               +    G+     +   ++      +      +       +  E+   +  +     
Sbjct: 397 EFRLTFSDEGSGIEPQDL-EKVFQPYFTTKEAGIGLGLAITERIVREHGGGIAVQSTKGE 455

Query: 206 NVVLSALLE 214
               S  L 
Sbjct: 456 GTTFSVTLP 464


>gi|196038119|ref|ZP_03105429.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196031389|gb|EDX69986.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 458

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           ++  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 NIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MER 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|162454319|ref|YP_001616686.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161164901|emb|CAN96206.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 850

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 60/244 (24%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDL--VAL--------LCSRICHDIISPIGAIHNSLELL------DEVG 44
           +A+       +  L   A         + + + HD+ +P+ AI  +  ++          
Sbjct: 602 LAQRAALAADNARLYEAAQRAIELRDNVLATVSHDLRNPLSAILTAAAVMTKRAVTRGEK 661

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIED 92
            + + +Q I+ S+      +  +                           +   E   ++
Sbjct: 662 GDTKAIQAIQRSAHRMDRLIHDLLDFASLRAGRLALRRQPQDPREIGREAVETFESQAQE 721

Query: 93  FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
                  V                ++L NL   A       G +T+  +  +   +FS+ 
Sbjct: 722 KGIQLGVVAADDVPLVTCDRDRVLQVLTNLLSNALQVTGAQGAITLRCERGEEHVVFSVA 781

Query: 153 INGNLARFPEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      E             +      +       L   +   +  E          
Sbjct: 782 DTGPGIPENELPHLFERFWRGERNGYKGTGLGLAIARELVAAHGGTIDVESRVGVGTTFR 841

Query: 211 ALLE 214
             + 
Sbjct: 842 FTIP 845


>gi|119896364|ref|YP_931577.1| putative sensor histidine kinase [Azoarcus sp. BH72]
 gi|119668777|emb|CAL92690.1| putative sensor histidine kinase [Azoarcus sp. BH72]
          Length = 728

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 68/255 (26%), Gaps = 40/255 (15%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
           + +     + +  L A+  L + + H+I +P+  I  +LEL+      +     + +  I
Sbjct: 442 LRRAHQQLVMNEKLTAIGELTAGVAHEINNPVAVIQGNLELVRELLGGDSAPVADELAQI 501

Query: 54  RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104
                     +  +           YT  VD+   +GD   +    ++  +      +  
Sbjct: 502 DAQVGRIHGIVTKLLQFARPGDFAGYTEQVDASGLVGDCLLLTRHNLSRGRIEVTTALDA 561

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG------------------------GKVTISV 140
            G       E  ++L+NL + A  ++P G                               
Sbjct: 562 RGTVEINRGELQQVLINLIVNAMQAMPDGGRLRLSTADIDEGGEDDDAGHGAGRNGKSEH 621

Query: 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE 200
           +         ++  G      +              +   +       +       L  +
Sbjct: 622 RHGFAGVCIRVEDTGCGIAADDLDRIFDPFFTTKKQEGTGLGLSISYAIVTRYGGHLNVD 681

Query: 201 IIDDHNVVLSALLEK 215
                    +  L +
Sbjct: 682 SQPGQGTRFTVCLRR 696


>gi|327484103|gb|AEA78510.1| Signal transduction histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 570

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 185 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 244

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 305 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 364 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTLYIP 428


>gi|320353717|ref|YP_004195056.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122219|gb|ADW17765.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 619

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 76/229 (33%), Gaps = 18/229 (7%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQ 51
           +++   +  +  L A+  +   + H++ +P+ +I     LL         E    D ++Q
Sbjct: 385 RSLEQRMRENERLAAVGRMAGGVAHEVRNPLSSIKGLALLLKNKFPLGSKEQDTADLLIQ 444

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107
                + +    L F R +  + G VD    LG   ++I      +    V         
Sbjct: 445 ETERMNRTITEMLSFTRPSALHLGRVDLGALLGRSLELIRAEAEENGIRSVLNIGPDLCP 504

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT 165
            +  +    ++ +N+ + A  ++  GG++ +S   +D+       +   G         +
Sbjct: 505 VLGDADRLQQVAMNVLLNAMQAMEEGGELVVSLANRDNGQTVELRISDTGAGIDPA-LLS 563

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           Q+      +      I       +  ++   +  E        +   L 
Sbjct: 564 QVFYPYFTTKQGGTGIGLAICQKIVADHGGTIELESEPVKGTTVIVTLP 612


>gi|297531667|ref|YP_003672942.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297254919|gb|ADI28365.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 609

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL-- 69
              + + H++ +P+  + + LE L +   +        +Q+++  +   I  +  +    
Sbjct: 379 QFVANVSHELRTPLTTMKSYLEALADGAWQDKDIAPRFIQVVQNETERMIRLVNDLLHLS 438

Query: 70  ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRERAKILL 120
                                + +    +     ++                 +  ++L 
Sbjct: 439 KLDSKDYKLKKTWINFSAYFHKVIDRFELTKSDNIRFVRKIPREAIFIEVDEDKITQVLD 498

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           N+   A    P+GG +T  V+   +E I S+   G      +    F +    +      
Sbjct: 499 NIISNALKYSPQGGTITFRVRKLSDEIIVSVSDEGVGIPKADLAKIFERFYRVDKARSRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +   +  E  +     +   L 
Sbjct: 559 LGGTGLGLAIAKEVVLAHGGTIWAESKEHKGTTIYFTLP 597


>gi|294495271|ref|YP_003541764.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666270|gb|ADE36119.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 713

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            K     L    + A +         + + H++ +P+ +I    ++L E     + +   
Sbjct: 463 RKENENALIQAKMKAEVADRTKSEFMTTMSHELRTPLNSIIGFSQMLLEVPGSELTNAHH 522

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIED-FIAVDK 98
           + +     S    L  +      +              D    L D+E +I       + 
Sbjct: 523 KYVSNILKSGKSLLHLINDILDISKVEAGKKEVEAEFFDIHKALYDVEMLIRPLASKKNI 582

Query: 99  RVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            + V +      L  +     +++ N+   A       GKV ++ +  + E   S+K NG
Sbjct: 583 DIIVDYENANNLLYADVIMFKQVMYNILNNATKFTAEKGKVFVTAKSGEKETSISVKDNG 642

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +K   + +             +   +    V      +   +  E  +      
Sbjct: 643 IGI-AEDKKEMVFEPFKQIDSAKNRRYEGTGLGLALVRSYVEMHGGNVWVESEEGKGSTF 701

Query: 210 SALLE 214
              + 
Sbjct: 702 IFTIP 706


>gi|229529485|ref|ZP_04418875.1| signal transduction histidine kinase [Vibrio cholerae 12129(1)]
 gi|229333259|gb|EEN98745.1| signal transduction histidine kinase [Vibrio cholerae 12129(1)]
          Length = 572

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|228934496|ref|ZP_04097331.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825133|gb|EEM70930.1| hypothetical protein bthur0009_29520 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 448

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 73/235 (31%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +     +GG +   V++ ++  I S+  NG      E+  +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNQGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|229165595|ref|ZP_04293369.1| hypothetical protein bcere0007_5760 [Bacillus cereus AH621]
 gi|228617878|gb|EEK74929.1| hypothetical protein bcere0007_5760 [Bacillus cereus AH621]
          Length = 421

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 53/219 (24%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQL-------IRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++ L E    ++ ++            +          
Sbjct: 201 SEFLASVAHELRTPLTYVRGYADIALKENTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 260

Query: 68  RLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           ++           + L            V+     +        +       +   +++ 
Sbjct: 261 QMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLLVKLDEQRFEQVMA 320

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +        +K  G      +                  
Sbjct: 321 NILNNAYRHSKEHYHINISVTEEHKHISIKIKDKGEGIPPEDLPHIFDRFYRVDKARSRA 380

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419


>gi|56421266|ref|YP_148584.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56381108|dbj|BAD77016.1| two-component sensor histidine kinase (phosphate regulation)
           [Geobacillus kaustophilus HTA426]
          Length = 582

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 59/220 (26%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK---FMRL 69
             + + H++ +P+ +I    E L      +    +  + +I   S      ++    +  
Sbjct: 361 FVANVSHELKTPVTSIKGFAETLLDGAMKDEAALEHFLTIILKESERLQTLVEELLDLSK 420

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLN 121
              +   +                +   K  +                       +ILLN
Sbjct: 421 IEQHGFQLQLEDVDIAQVIAEAAAVFRQKAAEKQIDLHIESPSGLVIRGDRNRMKQILLN 480

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A    P  G+V +  ++++ E +  +K  G      E   +I +            
Sbjct: 481 LLANAITYTPEHGRVAVEAEETEKEVLIHVKDTGIGIEEKEIP-RIFERFYRVDKARSRD 539

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  L   +   +          V +    K
Sbjct: 540 SGGTGLGLSIVKHLVEAHHGYITVASKVGRGTVFTIHFPK 579


>gi|301308093|ref|ZP_07214047.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833563|gb|EFK64179.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 882

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 55/229 (24%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       S  L +   + + H+I +P+ AI     LL      ++  + I + + + 
Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +               +    ++          V+     
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++++ N    A     +G  +            F +K  G      +    
Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDDE-LYFYVKDTGCGIAKDKIGQV 692

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S +    +      ++       +  E            L 
Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741


>gi|298374421|ref|ZP_06984379.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268789|gb|EFI10444.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 882

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 55/229 (24%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       S  L +   + + H+I +P+ AI     LL      ++  + I + + + 
Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +               +    ++          V+     
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++++ N    A     +G  +            F +K  G      +    
Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDDE-LYFYVKDTGCGIAKDKIGQV 692

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S +    +      ++       +  E            L 
Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741


>gi|262383010|ref|ZP_06076147.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295888|gb|EEY83819.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 732

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 20/229 (8%), Positives = 63/229 (27%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI    ++L   D+   + + + +I  ++
Sbjct: 496 LLRARDKAEESNRLKSTFLANMSHEIRTPLNAIVGFSQILTTTDDEEEKKQFVSIIESNN 555

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +  +  +             +            +  L    ++        +      + 
Sbjct: 556 VLLLQLIGDILDLSKIEAGTLEFVRNEVDLNVLMNELESSMRLKIADTVELRFTDRMPSC 615

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++L+NL   A      G          ++   F +   G      +    
Sbjct: 616 RLYVDKNRLSQVLINLLTNAMKFTKEGYIHFGYRLVDEDTLEFYVSDTGCGIPKEQLRNI 675

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   + +    +      ++      R+  E  +         ++
Sbjct: 676 FERFIKLNNFVSGTGLGLSICQVIVERMGGRIWVESDEGKGATFFFTIK 724


>gi|262382637|ref|ZP_06075774.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295515|gb|EEY83446.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 882

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 55/229 (24%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       S  L +   + + H+I +P+ AI     LL      ++  + I + + + 
Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +               +    ++          V+     
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++++ N    A     +G  +            F +K  G      +    
Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDDE-LYFYVKDTGCGIAKDKIGQV 692

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S +    +      ++       +  E            L 
Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741


>gi|255012665|ref|ZP_05284791.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 882

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 55/229 (24%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       S  L +   + + H+I +P+ AI     LL      ++  + I + + + 
Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +               +    ++          V+     
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++++ N    A     +G  +            F +K  G      +    
Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRHRDDE-LYFYVKDTGCGIAKDKIGQV 692

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S +    +      ++       +  E            L 
Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741


>gi|26991379|ref|NP_746804.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida KT2440]
 gi|24986446|gb|AAN70268.1|AE016667_1 sensory box histidine kinase [Pseudomonas putida KT2440]
          Length = 991

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          +  
Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREDDGEIIELSS 797

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++   +  S      + F      +          +       +  +      V     
Sbjct: 798 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +  A++L+NL   A  + P G  V +  + +++     ++  G+     
Sbjct: 858 CDPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVNEHTVDLIVEDEGSGIPKN 917

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 918 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976


>gi|254226277|ref|ZP_04919869.1| sensor histidine kinase/response regulator [Vibrio cholerae V51]
 gi|125621191|gb|EAZ49533.1| sensor histidine kinase/response regulator [Vibrio cholerae V51]
          Length = 572

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|326940960|gb|AEA16856.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 458

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L                + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E+  +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESNVIISISDNGIGM-EQEEMDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +L          +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTVRVELPK 458


>gi|298480139|ref|ZP_06998338.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|299144696|ref|ZP_07037764.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298273948|gb|EFI15510.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298515187|gb|EFI39068.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 399

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI    +L+        +++  ++I  +S   +     
Sbjct: 177 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 236

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      ++        +D  + L                  V             
Sbjct: 237 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFCHKTQNGVKLILDDVDTDMYTSGDWNRI 296

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +I+ NL   A    P+G  +    ++ ++   F +K +G         T          
Sbjct: 297 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVDD 355

Query: 176 I-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +L  +   R+     +         L 
Sbjct: 356 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 395


>gi|228940322|ref|ZP_04102893.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973238|ref|ZP_04133827.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979801|ref|ZP_04140123.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407]
 gi|228779955|gb|EEM28200.1| hypothetical protein bthur0002_29740 [Bacillus thuringiensis Bt407]
 gi|228786434|gb|EEM34424.1| hypothetical protein bthur0003_29980 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819448|gb|EEM65502.1| hypothetical protein bthur0008_29710 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 448

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L                + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKDFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E+  +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESNVIISISDNGIGM-EQEEMDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +L          +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGTVLVYSTKGEGTTVRVELPK 448


>gi|153829718|ref|ZP_01982385.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
 gi|148874797|gb|EDL72932.1| sensor histidine kinase/response regulator [Vibrio cholerae 623-39]
          Length = 572

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|77918268|ref|YP_356083.1| two-component sensor histidine kinase PhoR [Pelobacter carbinolicus
           DSM 2380]
 gi|77544351|gb|ABA87913.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 591

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 59/221 (26%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +PI  I  S+E L     +        +++I   +      +  +     
Sbjct: 370 FVANVSHELKTPITGIKGSVETLLDGAMERPEDAVRFLRIIAKQAERLNAIIDDLLDLSR 429

Query: 73  -------------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                            V  L        +     +++  +  +             + +
Sbjct: 430 IEQGQNDQALELSMAPVVPVLQAAVHACDMKARDKSIELVLSCAAEISAEINPHLLEQAV 489

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A      GG V I  +    + +  ++  G      E   ++ +          
Sbjct: 490 VNLVDNAIKYSDAGGTVWIEARRDARQTVIEVRDQGCGI-DNEHLPRLFERFYRVDKARS 548

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    V  +   +  R+  +       V   +L 
Sbjct: 549 RRAGGTGLGLSIVKHIVQAHGGRVTVDSEAGKGSVFRIILP 589


>gi|83312486|ref|YP_422750.1| sensor protein fixL [Magnetospirillum magneticum AMB-1]
 gi|82947327|dbj|BAE52191.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1]
          Length = 481

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           MAK      S+ DL   A + S   HD+  P+  +   + +L+            E +  
Sbjct: 249 MAKTEELARSNADLEQFAFIAS---HDLREPLRMVSAYMGMLERRFGPVVGDEGAEYIAY 305

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            +  +      +  +          + L  +   E V      +   +       +    
Sbjct: 306 AKEGAQRMDQLVLDLLEYSRVGRMEEPLEPVPLGEVVDGVVANLSPAIAQYGASVECRSP 365

Query: 113 --------RERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP- 161
                    E A++L NL   A         + + V           S+  NG       
Sbjct: 366 LPAIPAVRGEMAQLLQNLIGNAVKYREPSRPLRVVVSAVRDGEYWQISVADNGIGISPEF 425

Query: 162 -EKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E+  +I          +   I       +   +  R+    +       +  L 
Sbjct: 426 SERIFRIFQRLHTRDCFEGTGIGLAICKRIVERHGGRIWVNSVPGEGSTFTFTLP 480


>gi|150015425|ref|YP_001307679.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149901890|gb|ABR32723.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 357

 Score =  119 bits (297), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-S 59
           MAK +        L     S + H+I SP+ +I     LL +  ++ + +          
Sbjct: 122 MAKELGSL---EKLRQDFISDVSHEIQSPLTSISGFATLLKKGSLDKDQISHYASIIETE 178

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVSWTGEKI 109
           +    K        +        L   +           ++ +     K + +  + E+ 
Sbjct: 179 SKRLSKLSENLLRLSNLESEDNNLNLKKYEINKQIESVLLMLEPQWSAKNITLDISLEET 238

Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +  +     ++ +NL   A    P  G + +++ ++++     +   G      +    
Sbjct: 239 IICGDEDLLSQVFINLLNNAIKFTPENGNIGVNLYNNEDGVECKVSDTGIGISSEDQPRI 298

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +         + +    V  +   +  ++               L K
Sbjct: 299 FERFYKADKARNRSLGGNGLGLSIVKKIIDLHGGKISLTSEIGKGTEFIIWLPK 352


>gi|297585502|ref|YP_003701282.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297143959|gb|ADI00717.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 722

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 22/235 (9%)

Query: 1   MAKNICFN---LSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLI 53
           + +N       + S  L  +  + + + H+I +P+  I   ++LL+  + G   E  +++
Sbjct: 486 LTENRRMERELIHSEKLGMIGQMAAGLAHEIRNPMTTIKGFMQLLEQRDNGKNKEHYRVV 545

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQV 102
                     +  +          +               L   E  I++     +    
Sbjct: 546 LSEIDRVNDIMNELMNISSPEEVDEQELNETYVGGQIDEILTLHEPDIQERHIEVETFFA 605

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLAR 159
                 +    +  ++L N+   A  ++P GG++     S      E + ++   G+   
Sbjct: 606 EGDEPILTNVHKLKQVLSNVIRNAIEAMPDGGRLILRAHSESMDPAEVVITISDTGDGM- 664

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +       +    H +       +  E    +  + I          L 
Sbjct: 665 DEETAKKAGTPFFTTKEAGHGLGLATSYRIVKELGGSIDIDSIKGKGTSFLIRLP 719


>gi|254286108|ref|ZP_04961068.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
 gi|150423777|gb|EDN15718.1| sensor histidine kinase/response regulator [Vibrio cholerae
           AM-19226]
          Length = 572

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|56419521|ref|YP_146839.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56379363|dbj|BAD75271.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 430

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 63/206 (30%), Gaps = 10/206 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L + I H+I +P+ ++   ++++ E           ++  +   +      L   +    
Sbjct: 211 LAAGIAHEIRNPLTSMKGFIQMMQETREVNDHYMRIMLSELGRINQIVSELLVLAKPQSH 270

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                     +  +  +I     ++         +          +  ++LLN+   A  
Sbjct: 271 DYRPFLLDEAISYVISLIGHEATLNNVSISVHNTAPKACVYGDQNQIVQVLLNVMKNAVE 330

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG + + V +   +    +   G      E+  +I +           +     + 
Sbjct: 331 AMPDGGILYVHVAEGDGKIYVDVADTGVGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 389

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +  E+K  +  E        +     
Sbjct: 390 IVQEHKGTMRIESEVGKGTTVHLTFP 415


>gi|89098438|ref|ZP_01171322.1| hypothetical protein B14911_12317 [Bacillus sp. NRRL B-14911]
 gi|89086987|gb|EAR66104.1| hypothetical protein B14911_12317 [Bacillus sp. NRRL B-14911]
          Length = 282

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 61/211 (28%), Gaps = 15/211 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           L + I H+I +P+  +   L+LL        +       +  I  ++      L   + +
Sbjct: 53  LAAGIAHEIRNPLTTVKGFLQLLKPQLREIGKEEYASIALGEISRANEIIGSFLNANKPS 112

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVA 126
                 V     + +I  + E    +   + +                  ++L NLF  A
Sbjct: 113 ENKMKKVHINQIVKEIVMLYESEAVLRGSLLLFEPSPNDPTMAAVPGELKQVLSNLFKNA 172

Query: 127 HASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
             ++        V   V+      + +++ NG      E   +I +    +      I  
Sbjct: 173 MEAMTIQSMAGSVQAKVECCSKHAVITIQDNGCGM-SEETLQRIYEPFYTTKETGTGIGM 231

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  E    +           +  +L 
Sbjct: 232 SVCKKIVEELGGSIDISSRPGEGTAVKVILP 262


>gi|148549762|ref|YP_001269864.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida F1]
 gi|148513820|gb|ABQ80680.1| Two-component sensor kinase CbrA [Pseudomonas putida F1]
          Length = 991

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          +  
Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 797

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++   +  S      + F      +          +       +  +      V     
Sbjct: 798 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +  A++L+NL   A  + P G  V +  + +++     ++  G+     
Sbjct: 858 CDPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVNEHTVDLIVEDEGSGIPKN 917

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 918 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976


>gi|147674610|ref|YP_001217001.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|146316493|gb|ABQ21032.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
 gi|227013361|gb|ACP09571.1| sensor histidine kinase/response regulator [Vibrio cholerae O395]
          Length = 514

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 129 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 188

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 189 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 248

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 249 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 307

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 308 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 366

Query: 209 LSALLE 214
            +  + 
Sbjct: 367 FTLYIP 372


>gi|326625882|gb|EGE32227.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
          Length = 534

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 309 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 368

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 369 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 428

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  NG      +    I      +
Sbjct: 429 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDNGKGIAPDQL-EAIFTPYFTT 487

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 488 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 527


>gi|229181704|ref|ZP_04309027.1| hypothetical protein bcere0005_50430 [Bacillus cereus 172560W]
 gi|229193709|ref|ZP_04320650.1| hypothetical protein bcere0002_53520 [Bacillus cereus ATCC 10876]
 gi|228589734|gb|EEK47612.1| hypothetical protein bcere0002_53520 [Bacillus cereus ATCC 10876]
 gi|228601737|gb|EEK59235.1| hypothetical protein bcere0005_50430 [Bacillus cereus 172560W]
          Length = 672

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKSDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|218130832|ref|ZP_03459636.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
 gi|217987176|gb|EEC53507.1| hypothetical protein BACEGG_02427 [Bacteroides eggerthii DSM 20697]
          Length = 912

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 19/229 (8%), Positives = 54/229 (23%), Gaps = 20/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
           AK        +    L  + + H+I +P+ AI     ++    +         ++  ++ 
Sbjct: 513 AKEKAEASDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESTDAEERKSFYDIVEANNE 570

Query: 59  SAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +  +                          + D  +                   
Sbjct: 571 RLLQLINEILDLSKIEAGIVEFTITPVRLHSLCREIYDALKFRCPQGVKLIYEPSDEEIT 630

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A     + GKV+   +   +   F +   G      +   ++
Sbjct: 631 IEGDKNRIFQVISNLIGNAFKFTTQ-GKVSYGYRRKGDGIEFHVSDTGIGIEAGKL-DKV 688

Query: 168 VDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    + S      +       +       +            +  L 
Sbjct: 689 FERFVKMNSFAQGTGLGLSICKTIIERLGGTISASSEMGKGTTFTFTLP 737


>gi|86158415|ref|YP_465200.1| signal transduction histidine kinase NtrB [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774926|gb|ABC81763.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 457

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 68/227 (29%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + +    A+  + + + H+I +P+  +  +LELL E    D     I       + 
Sbjct: 220 RERMVRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDFSADARHSDIVTEMQHQVR 279

Query: 63  --------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
                    L F R A     S D    L  +  +I           V      +     
Sbjct: 280 RLTHTMESLLSFARPAKAKLRSTDVNATLEKVLFLIRQQSRDGTIELVPELSPGLPAVLA 339

Query: 111 LSRERAKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +  ++ LN+ + A  ++    +   +T+  +         ++  G      +   QI
Sbjct: 340 DPSQLEQVFLNICLNACQAMIATRRGGVLTVRSRVGDGTVSVEVEDTGPGI-PADLRAQI 398

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  + + +       +  E+   +      +     +  L+
Sbjct: 399 FKPFFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTTFTVTLQ 445


>gi|323498274|ref|ZP_08103276.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio sinaloensis DSM 21326]
 gi|323316702|gb|EGA69711.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio sinaloensis DSM 21326]
          Length = 602

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 66/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54
           + +     + +  L  L  + + I H++ +P+ AI +  +     L +  ++     L R
Sbjct: 358 LRQTQNELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLAKQKLDRVDENLSR 417

Query: 55  LS--SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVS- 103
           +S  +         ++     + S D  +       +              V+  V V  
Sbjct: 418 VSSLTDRMAKISSQLKSFTRKSDSNDVHLMELTPIVISAKELVAPQIKSYRVELTVNVDN 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161
                   + +  ++L+NL   A  ++    +  +              +  NG      
Sbjct: 478 LNVRAEINAIQVEQVLINLLTNAAQAVADLPERQVQLSSAQFGEFVDIYIDDNGPGIDSK 537

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +    +  +   +       +      +L            +  L 
Sbjct: 538 QAHQ-LFEPFYTTKKNGLGLGLSISQQIIQAMHGQLSVSQSPLGGARFTMRLP 589


>gi|218895704|ref|YP_002444115.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218540583|gb|ACK92977.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 463

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 296 QIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ D       +++  G      +                 +
Sbjct: 356 NILNNAYRHSKEHSHINISITDEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRS 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 454


>gi|114566484|ref|YP_753638.1| sensory box histidine kinase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337419|gb|ABI68267.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 346

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 61/217 (28%), Gaps = 24/217 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRLAFG 72
               + H++ +P+ +I   +E L +  +E+       + +I   +      ++ +     
Sbjct: 126 FVGNVSHELRTPLTSIKGFVETLLDGAMENSDTCRRFLSIIDTETNRLTRLIEDLLTLSS 185

Query: 73  YTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILL 120
                  +                +      +K + V +         +       ++ +
Sbjct: 186 IESQERIVYLKPACLLRSIRNVMNMFGPQISEKSLHVEFIHPYPMPLIQADEDLLGQVFI 245

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    PR GK+ I  Q   +  I ++K +G      E   ++ +           
Sbjct: 246 NLLDNAIKYTPRQGKIVIQCQRRDSRIITTVKDSGMGI-PHESLPRVFERFYRVDKARSR 304

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                 +    V  +   +   +  +           
Sbjct: 305 QQGGTGLGLSIVKHIVESHGGEVFVDSEIGKGSTFGV 341


>gi|330811773|ref|YP_004356235.1| Two-component sensor [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379881|gb|AEA71231.1| Two-component sensor [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 984

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E   +D        ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREDDGELTEISGQILEQTK 804

Query: 55  LSSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V             
Sbjct: 805 RVSRIVQSLMSFAHAGGHQHNDEPVCLAEVAQDAIGLLALNRRNFEVQFFNLCDPDHWVD 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  +  ++     ++  G+         ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVKSEAFEHTVDLIVEDEGSGIPQN-IMDRLFE 923

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADVQSQRGTRIRVTLPR 975


>gi|320355414|ref|YP_004196753.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123916|gb|ADW19462.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 608

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 55/225 (24%), Gaps = 28/225 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +PI AI   +E L     ++       + ++   +      +  +     
Sbjct: 373 FVANVSHELKTPITAIKGYVETLLDGALEDQDNARRFLSIVVRQANRLDAIVDDLLTLSR 432

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------SWTGEKIDLSRERAKIL 119
                        + +V     +  +   V                           + +
Sbjct: 433 IEDREQRRDISLTVAEVGPVLESALQTCAVQADEKGIIIQVESDEEWYAPINQPLLEQAV 492

Query: 120 LNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN 171
           +NL   A A  P+G            +  +     S+  NG           F +    +
Sbjct: 493 INLLGNAIAYSPQGSLITLRCQGSRNRQGEEFVHLSVIDNGPGIAKEHLPRLFERFYRCD 552

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +A  +   +  E         + +L 
Sbjct: 553 KARSRDQGGTGLGLAIAKHIAQAHNGTVEVESSLGKGSTFTLILP 597


>gi|300118415|ref|ZP_07056161.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298724200|gb|EFI64896.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 263

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 33  MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 89

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 90  SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 149

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +       G +   V++ ++  I S+  NG      E   +
Sbjct: 150 TIKGDENLLHQVWSNIFTNSIKFSNDDGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 208

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 209 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 263


>gi|317152718|ref|YP_004120766.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942969|gb|ADU62020.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 497

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 64/229 (27%), Gaps = 16/229 (6%)

Query: 2   AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLEL------LDEV--GIEDEVM 50
            +++   L  +  L       + + H+I  P+  I    +L      L +        ++
Sbjct: 261 RQSLEQQLRQADRLAKIGQFSAGLAHEINEPLANILGFAQLALQAKSLSDQVVNDLKNIV 320

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106
                +       + F R         D    +    ++ E     +    V        
Sbjct: 321 DSSLHAREIIRKVMFFSRQMPPQFVLTDLNQTIRQALRITEVGAKRNNIEVVCELDENLP 380

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +   +   ++++NL   A  ++ +GG +T+   +  ++    ++  G      E    
Sbjct: 381 RVMADPQHITQVVVNLVANAIQAMEKGGVLTVKTINYNDDAYIVIEDTGPGIPPEELKQI 440

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +D    +    V  +   ++  +  +              
Sbjct: 441 FNPFYTTKDVDKGTGLGLSVVHGIVKAHEGFIQVDSTPGKGTRFEVAFP 489


>gi|229010081|ref|ZP_04167295.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048]
 gi|228751214|gb|EEM01026.1| hypothetical protein bmyco0001_5490 [Bacillus mycoides DSM 2048]
          Length = 421

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 15/219 (6%), Positives = 50/219 (22%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++  +     E                +          
Sbjct: 201 SEFLASVAHELRTPLTYVRGYADIASKENTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 260

Query: 68  RLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           ++           + L            V+     +        +       +   +++ 
Sbjct: 261 QMEKHNFFIQVQEVHLHTFLTRITEKINVMYGEKQIKVVFTCPSSLLVKLDEQRFEQVMA 320

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 321 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 380

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH    +  L 
Sbjct: 381 TGGTGLGLSIVKEIVELHGGNITVTSEIDHGSCFTISLP 419


>gi|83589679|ref|YP_429688.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
 gi|83572593|gb|ABC19145.1| multi-sensor signal transduction histidine kinase [Moorella
           thermoacetica ATCC 39073]
          Length = 604

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           ++I        +     + + H++ +P+  I    E L +          E   +I   +
Sbjct: 363 QDITTQKKMEQMRREFLASVSHELRTPLSFIQGYGEALADGLATGEKERQEYTGIILAEA 422

Query: 58  MSAIIRLKFMRLAFGYT---------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  +                      +  G   +           ++V      
Sbjct: 423 NRLRRLVDDLFDLNKMAAGHLPLELAEVDPGELVTGVARKYQPLLAEHGLVLEVELEPYL 482

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
             +  +     ++L+NL   A      GG++TIS   +  E   S+   G      E   
Sbjct: 483 PPVWADAGRLEQVLVNLLDNARRHTSPGGRITISAGLAGRELKISVADTGKGIPAGELPY 542

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +   +       +    V  L   +  R+          + S  L 
Sbjct: 543 IWERFYKVDKSRSRGDSGSGLGLAIVKGLVEAHGGRVEVVSEPGRGSIFSFYLP 596


>gi|86146009|ref|ZP_01064336.1| signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85836214|gb|EAQ54345.1| signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 658

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     + +  L AL  L + I H+I +P   I  ++EL+                 +
Sbjct: 413 LNQARDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMKFELGDEVARVDEEVHAI 472

Query: 50  MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           M+ I          L++ R         +      +     + +       +    Q++ 
Sbjct: 473 MEQIDRIRNITRSLLQYSRHGGVQDEITWQHINPIVDESITLVKTGAKKKGIVYVSQLNA 532

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M A  ++   G               +  I  ++  G    
Sbjct: 533 KTSVEVNRNQLLQILVNLQMNAIHAMDGQGTLTISSEDWVENGVSHGAIVHVEDEGCGI- 591

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  +I      +  D   +       +  +    +  E         S  L+
Sbjct: 592 KEEQLKRIFSPFYTTKRDGTGLGLSVSQSILSQTGGEIRVESEVGKGSRFSIYLQ 646


>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 2028

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 66/232 (28%), Gaps = 22/232 (9%)

Query: 5    ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRLSS 57
            +  +  +  L   + + + HD+ SP+ AI  S ELL  +  E E +         IR S+
Sbjct: 781  LEESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSA 840

Query: 58   MSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                  +  +                     + +    ++ +       +    +V    
Sbjct: 841  DRMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGL 900

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164
                      + L NL   A    P GG + +     +   +   S+   G       + 
Sbjct: 901  ILSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQP 960

Query: 165  TQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     V++  + H +       +   +  R+  E         S  L 
Sbjct: 961  HIFDRYWHGVQNKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 1012



 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 60/237 (25%), Gaps = 27/237 (11%)

Query: 5    ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
                  + +L  L        S + H+  +P+  I   +E       +    + + L   
Sbjct: 1359 EQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEKLDLVRR 1418

Query: 59   SAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            +A+   K +             A  +   VD      ++    +  +       V     
Sbjct: 1419 NALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGLRLVVDCPP 1478

Query: 108  K----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                         K++LNL   A      G    +      +    +++  G      E 
Sbjct: 1479 LPEPLYVDPEMWEKVVLNLLSNAVKYTYEGEIRVVLRWQDDHAV-LTVQDTGVGIPEEEL 1537

Query: 163  --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +          + +   I    V  L   +   +  E         +  L +
Sbjct: 1538 PRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAFTLRLPR 1594



 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 63/218 (28%), Gaps = 26/218 (11%)

Query: 21  RICHDIISPIGAIHNSLE-LLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-- 75
            + H++ +P+  +   +E  L++    +  +  +   +   + +   K + +   +    
Sbjct: 375 NVSHELRTPLALMLGPIEDGLEDTEYPLPPKQRERQEVVHRNGLRLRKLVNMLLDFARME 434

Query: 76  ---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNL 122
                      D      ++       +A      V                  K++LNL
Sbjct: 435 AGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPVLPEAVYVDPAMWEKVVLNL 494

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STI 176
              A     +G  V I+++   +    +++  G      E   +I +           + 
Sbjct: 495 LSNALKFTLQGE-VRIALRWLGDRVELTVQDTGTGMPEAELP-RIFERFHRVEGARGRSH 552

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   I    V  L   +   +  + +       +  L 
Sbjct: 553 EGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLP 590



 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 61/239 (25%), Gaps = 33/239 (13%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
            + +++      ++L       + H++ +P+ A+  + + L      E G E  +  +   
Sbjct: 1792 LRESVRVRDEFLNL-------VSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVK 1844

Query: 56   SSMSAIIRLK-----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
            +  +     +                  ++LA            + +  Q          
Sbjct: 1845 AQTTQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVL 1904

Query: 99   RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             +                ++L  L   A              +DS    + ++  +G   
Sbjct: 1905 TLNAPSPVMGYCDRARLHQLLEGLLDNALKFGAGKPIEVAVWRDSD-HALLTVMDHGAGI 1963

Query: 159  RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    F +      E       +  +    +A  +   +     +      +  L 
Sbjct: 1964 EPEDEERIFGRFERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALP 2022


>gi|302037599|ref|YP_003797921.1| putative sensor histidine kinase FleS [Candidatus Nitrospira
           defluvii]
 gi|300605663|emb|CBK41996.1| putative Sensor histidine kinase FleS [Candidatus Nitrospira
           defluvii]
          Length = 429

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 70/230 (30%), Gaps = 19/230 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLSSM 58
           ++     + ++ +  +   I H+I +P+G++     +L +   +   +    + I ++  
Sbjct: 165 EDRLQRRNRLEAMGQMVGNIAHEIRNPLGSVELFASMLRKDLRDQPHLRTYAEHISMAVQ 224

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKIDLSR 113
           +    L  + +      S  + +    + + +              V+         +  
Sbjct: 225 AMDRLLSNLLVYTRPDCSRLAWLDTESLIREVLTLASHAMSPASIVVRCEVDPRVPKIWC 284

Query: 114 E---RAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +     ++LLNL + A  ++P         ++  +          ++   G         
Sbjct: 285 DGGKMKQVLLNLVLNAVQAMPEGGSLTLSARMAPAGISEAPAIQLTVSDTGTGIPLA-LQ 343

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +++ D    +      +    V  L   +  R+  E    H         
Sbjct: 344 SRVFDPFFTTKDQGTGLGLAIVHALVEAHHGRIDVESRPGHGTSFVMTFP 393


>gi|262381697|ref|ZP_06074835.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296874|gb|EEY84804.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 632

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 66/228 (28%), Gaps = 20/228 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +     L  +    L  + + H+I +P+ AI    +LL   D+     E +++I  ++
Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             M   F      + +  +    ++           Q S   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMNVKEVINEIVTSFRIKMPDNVALIAPQDSPEC 506

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         +++ N    A       G +T++ +   +E  FS+   G+     E    
Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCITLAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I D      +      +       + +    R+               
Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612


>gi|239827208|ref|YP_002949832.1| histidine kinase [Geobacillus sp. WCH70]
 gi|239807501|gb|ACS24566.1| histidine kinase [Geobacillus sp. WCH70]
          Length = 418

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 83/223 (37%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++    +  M++V+ L + I H+I +P+  +   ++LL      +   +  +   +   +
Sbjct: 194 RSKLVKVEKMEVVSQLAASISHEIRNPLTVVKGFIQLLKTPSLSQDAKDRYIQIALDEIN 253

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLS 112
            +  I  +++  A   +  V+ L+    + +VI+    +     +        G  +   
Sbjct: 254 RAEAIINEYLTFAKPASNKVERLMVDDQLRKVIQMLAPMAHMNSIEIVEELQPGAIVGNI 313

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG +TIS     N  I ++K  G      E+  +  +   
Sbjct: 314 QYFQQCFLNLIKNSIEAMPNGGTLTISSFLHGNHVIITIKDTGVGM-TTEQMNRFGEPYF 372

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L  +   +    L+    K
Sbjct: 373 STKEKGTGLGTMVAVKMIQTMQGTLHIQSEVNKGTTLTITFPK 415


>gi|138893858|ref|YP_001124311.1| sensory transduction histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196250568|ref|ZP_03149258.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134265371|gb|ABO65566.1| Sensory transduction histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196209917|gb|EDY04686.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 443

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 61/234 (26%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           M+K +     + ++   L + + H++ +P+  +   L+        IE E +  ++   +
Sbjct: 213 MSKQLQ---QAEEVRRRLMADVAHELRTPLTILRGKLDWFQQQRRPIEPEKLLPLQDELI 269

Query: 59  SAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                ++ +                           +  +    E+          +   
Sbjct: 270 RLTRLVEDLHQLSLAEAGKLPLERKPTDMESLLQQLIERVAPSAEEKNIRIHLTCSTNYT 329

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
                     ++ LNL + A    P GG V + + +  +    ++   G        P  
Sbjct: 330 TISVDPHRITQVFLNLLVNAIRYTPEGGTVNVVIDEEPSMLQIAVTDTGIGIAPEHLPFL 389

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +           +   +               L +
Sbjct: 390 FHRFYRTDEARTRNRGGTGLGLAIANEFVSAHGGTIDVHSTPGQGTTFLVKLPR 443


>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1991

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 66/232 (28%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRLSS 57
           +  +  +  L   + + + HD+ SP+ AI  S ELL  +  E E +         IR S+
Sbjct: 744 LEESRRATRLREDMLAVVSHDLRSPLTAIRTSAELLRRIPPEGEPLARVHKQADAIRRSA 803

Query: 58  MSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 +  +                     + +    ++ +       +    +V    
Sbjct: 804 DRMNRLIDDLLDLASIDAGTLSVQAHPQRVDELVRDARELFEPHAAEKGLQLAFEVEPGL 863

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164
                     + L NL   A    P GG + +     +   +   S+   G       + 
Sbjct: 864 ILSCDKERILQALGNLLSNAIKFTPPGGSILLRAHAEEGTEDIRLSVADTGPGIPLAAQP 923

Query: 165 TQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    V++  + H +       +   +  R+  E         S  L 
Sbjct: 924 HIFDRYWHGVQNKREGHGLGLSIAKGIVESHGGRIRLEKTSGEGSTFSFSLP 975



 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 60/237 (25%), Gaps = 27/237 (11%)

Query: 5    ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
                  + +L  L        S + H+  +P+  I   +E       +    + + L   
Sbjct: 1322 EQEKQRAEELALLDQAKTAFFSNVSHEFRTPLTLILGPVEDALSKPAKALTGEKLDLVRR 1381

Query: 59   SAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            +A+   K +             A  +   VD      ++    +  +       V     
Sbjct: 1382 NALRLYKMVNTLLDFSRMEAGRAQAHYVPVDLSAVTRNLASAFQSAVESAGLRLVVDCPP 1441

Query: 108  K----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                         K++LNL   A      G    +      +    +++  G      E 
Sbjct: 1442 LPEPLYVDPEMWEKVVLNLLSNAVKYTYEGEIRVVLRWQDDHAV-LTVQDTGVGIPEEEL 1500

Query: 163  --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +          + +   I    V  L   +   +  E         +  L +
Sbjct: 1501 PRVFERFYRVRATQGRSHEGTGIGLALVQELMKLHGGSISVESTLGEGTAFTLRLPR 1557



 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 63/218 (28%), Gaps = 26/218 (11%)

Query: 21  RICHDIISPIGAIHNSLE-LLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-- 75
            + H++ +P+  +   +E  L++    +  +  +   +   + +   K + +   +    
Sbjct: 338 NVSHELRTPLALMLGPIEDGLEDTEYPLPPKQRERQEVVHRNGLRLRKLVNMLLDFARME 397

Query: 76  ---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNL 122
                      D      ++       +A      V                  K++LNL
Sbjct: 398 AGRAQASFVPTDLSALTIELASNFGSAMAAAGLAMVVDCPVLPEAVYVDPAMWEKVVLNL 457

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STI 176
              A     +G  V I+++   +    +++  G      E   +I +           + 
Sbjct: 458 LSNALKFTLQGE-VRIALRWLGDRVELTVQDTGTGMPEAELP-RIFERFHRVEGARGRSH 515

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   I    V  L   +   +  + +       +  L 
Sbjct: 516 EGTGIGLALVQELVKLHGGSVTVKSVLGQGSTFTVSLP 553



 Score = 92.1 bits (227), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 61/239 (25%), Gaps = 33/239 (13%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
            + +++      ++L       + H++ +P+ A+  + + L      E G E  +  +   
Sbjct: 1755 LRESVRVRDEFLNL-------VSHELRTPVSALSLNFQSLVRSLGREGGDEASLEAVGVK 1807

Query: 56   SSMSAIIRLK-----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
            +  +     +                  ++LA            + +  Q          
Sbjct: 1808 AQTTQKQLHRLARLVEQLLDASEFVTGCLKLARQEVDLSGVASAVVEQAQSKAAHAGCVL 1867

Query: 99   RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             +                ++L  L   A              +DS    + ++  +G   
Sbjct: 1868 TLNAPSPVMGYCDRARLHQLLEGLLDNALKFGAGKPIEVAVWRDSD-HALLTVMDHGAGI 1926

Query: 159  RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    F +      E       +  +    +A  +   +     +      +  L 
Sbjct: 1927 EPEDEERIFGRFERAVSEKNYGGFGLGLWISRHIAEAHDGSIRLRPTEGGGATFTVALP 1985


>gi|78186756|ref|YP_374799.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166658|gb|ABB23756.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 738

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 70/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           M +N   +   ++++  L   I HD  + +  I    EL    L E     E +  +  +
Sbjct: 486 MLENKLRDRQKIEMLGTLAGGIAHDFNNLLTPIIGYSELVLESLPEKSELGESLNTVIKA 545

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKI 109
           +M     ++ M +             L  I     DF           + +   ++   +
Sbjct: 546 AMRGKKLIRQMLMFGRNDTPSLRPCQLKPILDEAMDFLRPSIPSTVRMEILIADFSDAVM 605

Query: 110 DLSRERAKILLNLFMVAHASLPR-----------------GGKVTISVQDSKNENIFSLK 152
               +  +I+LNL   A  ++                      +   +   +     +++
Sbjct: 606 CDPMQIQQIILNLCTNAWQAMVNETGTVSVELSKTTAENAMAAINKPLLRDQVYARITVR 665

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            +G           + D    +        +    V  +   +K  +  E  +     ++
Sbjct: 666 DDGTGMSKT-VSDCMFDPFYTTKEVGKGTGLGLSVVYGIVKAHKGEISVESTEGSGTAVT 724

Query: 211 ALLE 214
             L 
Sbjct: 725 VFLP 728


>gi|297530823|ref|YP_003672098.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297254075|gb|ADI27521.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 430

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 64/206 (31%), Gaps = 10/206 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L + I H+I +P+ ++   ++++ E           ++  +   +      L   +    
Sbjct: 211 LAAGIAHEIRNPLTSMKGFIQMMQETREVNDHYMRIMLSELGRINQIVSELLVLAKPQSH 270

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                     +  +  +I     ++         +          +  ++LLN+   A  
Sbjct: 271 DYRPFLLDEAISYVISLIGHEATLNSVSISVHNTAPKACVYGDQNQIVQVLLNVMKNAIE 330

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG + + V ++  +    +   G      E+  +I +           +     + 
Sbjct: 331 AMPDGGILYVHVAEADGKIYVDVADTGVGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 389

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +  E+K  +  E        +     
Sbjct: 390 IVQEHKGTMRIESEVGKGTTVHLTFP 415


>gi|259047883|ref|ZP_05738284.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
 gi|259035560|gb|EEW36815.1| sensory box histidine kinase VicK [Granulicatella adiacens ATCC
           49175]
          Length = 618

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 68/224 (30%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+ +I +  E L     +   I  E + +I   +   +  +  +     
Sbjct: 382 FVSNVSHELRTPLTSIKSYTEALVDGAWENKEIAPEFLNVIETETDRMMRMITDLLNLSR 441

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
                             V  ++   D+    + +   + R+    T   + +  +    
Sbjct: 442 MDQNRLELDKEFVNMNELVKHIVNRFDMVLQSDQYREKNYRILTDITQRNLWVEIDQDKM 501

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++L N+   A    P GG++ + + ++  + I S+   G      +             
Sbjct: 502 TQVLDNIINNAIKYSPDGGRIIVRLMETHTDLIVSVSDEGLGVPRKDIPHLFDRFYRVDK 561

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +       +   +  ++    I++        L 
Sbjct: 562 ARSRAMGGSGLGLAISKEVVQLHGGKIWVNSIENKGSTFFISLP 605


>gi|224477937|ref|YP_002635543.1| two-component sensor histidine kinase [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|222422544|emb|CAL29358.1| two-component sensor histidine kinase [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 614

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 18/238 (7%), Positives = 70/238 (29%), Gaps = 27/238 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           ++     +        + + H++ +P+ ++++ LE L+     +  I  + + + R  ++
Sbjct: 365 DVTEQQQNERDRREFVANVSHELRTPLTSMNSYLEALEEGAWKDEEIAPQFLSVTREETV 424

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------- 105
             I  +  +        + +        +++++  + ++K +                  
Sbjct: 425 RMIRLVNDLLQLSKMDNANEENASNQVTKEIVDFNMFINKIINRHEMAAKDVTFVRDIPE 484

Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFP 161
                     +  ++  N+   A        +V   V+ +   N  +++   NG      
Sbjct: 485 ETIFTEIDPDKMTQVFDNVITNATKYSRGDKRVEFHVKPNPLYNRMTIRIKDNGIGIPIT 544

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  +    +       +   +  R+    ++     +   L 
Sbjct: 545 KVDKIFDRFFRVDKARARKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 602


>gi|213161648|ref|ZP_03347358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
          Length = 393

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 168 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 227

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 228 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 287

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 288 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 346

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 347 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 386


>gi|251796742|ref|YP_003011473.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
 gi|247544368|gb|ACT01387.1| GAF sensor signal transduction histidine kinase [Paenibacillus sp.
           JDR-2]
          Length = 595

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 71/223 (31%), Gaps = 20/223 (8%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL 69
           +L +   + + H++ +PI A+  ++++L +     + D  + L+  +  S    L  +  
Sbjct: 373 ELKSDFIATLSHELRTPITAVKGTVDILRKEVLGKLNDSQLDLLETAGKSIERLLNQVNE 432

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------------TGEKIDLSR 113
              +    +    L   E   E+ I     +  S                          
Sbjct: 433 LLDFAKMENGKFELMYSEFDFEELIREATHIVDSLINKKKLELAVEIHAGENRTMRADRE 492

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
              +ILLNL   +    P+ GK+TI      NE    +   G      ++          
Sbjct: 493 RILQILLNLLSNSIKFTPQRGKITIKAYMEDNEMTIEVIDTGIGIPVEKQKNIFTKFYQV 552

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + I+   +       L   +  ++  E  +    V    ++K
Sbjct: 553 NNQINGTGLGLAISRQLIEMHGGKISFESTEGEGSVFKFTVKK 595


>gi|149182171|ref|ZP_01860653.1| Sporulation kinase [Bacillus sp. SG-1]
 gi|148850122|gb|EDL64290.1| Sporulation kinase [Bacillus sp. SG-1]
          Length = 412

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 78/226 (34%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
           +  N         L       + I H++ +P+ ++    +L  ++   + E   ++    
Sbjct: 183 LRLNDQLR-EKEKLAVIGRFATSISHEVRNPLASLKGFTQLQHEKHPEDSEYYTIMTNEI 241

Query: 58  MSAIIRLKFMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                 L  + +     G          + +    + +  A ++ +Q++   +      +
Sbjct: 242 ERISSLLDDLLVIGKPKGLNLKSHDPKDIIEYVVKLMESDANNQNIQLTGEIKSGLPKID 301

Query: 115 RA-----KILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV 168
                  ++L+NL   A  ++P GG+VT+  +   ++  + S++  G      E   Q+ 
Sbjct: 302 CDEKHLKQVLINLIKNAMEAMPAGGEVTVKAEMGEEDTVLLSIRDEGEGI-SKENLEQLG 360

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  D   +       +  E+   +  + ++     +S  L 
Sbjct: 361 TPFHTTKSDGTGLGLMVSFKIIEEHSGTIRYDSVEGQGTTVSITLP 406


>gi|71908200|ref|YP_285787.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71847821|gb|AAZ47317.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 623

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 79/233 (33%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
           MA+ +     + +  A+  + S I HD+ + + ++  +L++LDE   ++  MQ+      
Sbjct: 376 MAEQLRLAGKNSEQSAMGQMASMIAHDLRNALSSVKMNLQILDEHHRKEGDMQIENCEIA 435

Query: 57  ----SMSAIIRLKFMRLAFGYTGSVDS----LIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                    I    +  A   T   D              ++ +       V++    + 
Sbjct: 436 LGQVRYMETILNDMLTYARPGTAEFDWVDLGDTLRAASVSLLPEITRKSVEVRMEGEEKL 495

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV-------TISVQDSKNENIFSLKINGNLARFP 161
             +  +R K+L     V   ++    +           + +S+       + +G     P
Sbjct: 496 PTIMADRNKLLQLFQNVLGNAIYAVPEWGLIIIRTRCLLHESQPSVEIRFEDDGPGI-SP 554

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++ D    ++     +    V  +  ++  ++  +   DH   +  +L 
Sbjct: 555 QIADKVFDPFFTTSSRGTGLGLAIVQRIVAQHGGQVYLDSERDHGTTVVVVLP 607


>gi|239637304|ref|ZP_04678291.1| sensor protein YycG [Staphylococcus warneri L37603]
 gi|239597141|gb|EEQ79651.1| sensor protein YycG [Staphylococcus warneri L37603]
          Length = 608

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 67/219 (30%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+E       +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDDNLAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                D +        +  + I     +    T    ++ ++            ++  N+
Sbjct: 439 MDNESDQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 597


>gi|261419208|ref|YP_003252890.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319766024|ref|YP_004131525.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261375665|gb|ACX78408.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317110890|gb|ADU93382.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 430

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 64/206 (31%), Gaps = 10/206 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L + I H+I +P+ ++   ++++ E           ++  +   +      L   +    
Sbjct: 211 LAAGIAHEIRNPLTSMKGFIQMMQETREVNDHYMRIMLSELGRINQIVSELLVLAKPQSH 270

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                     +  +  +I     ++         +          +  ++LLN+   A  
Sbjct: 271 DYRPFLLDEAISYVISLIGHEATLNSVSISVHNTAPKACVYGDQNQIVQVLLNVMKNAIE 330

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG + + V ++  +    +   G      E+  +I +           +     + 
Sbjct: 331 AMPDGGILYVHVAEADGKIYVDVADTGVGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 389

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +  E+K  +  E        +     
Sbjct: 390 IVQEHKGTMRIESEVGKGTTVHLTFP 415


>gi|228994818|ref|ZP_04154616.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM
           12442]
 gi|228764926|gb|EEM13682.1| hypothetical protein bpmyx0001_54810 [Bacillus pseudomycoides DSM
           12442]
          Length = 449

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK +    +S  +     S + H+  SP+ +I    + L    +             S 
Sbjct: 207 MAKRLR---NSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDLTKSEQTHYLEIIESE 263

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             R+  +        S+D        +         D    + W     +L+ E      
Sbjct: 264 SRRMSSLCKQLLILASLDKEDLTLRKQSFDLGNQIKDTIFMLEWEWRTKELAVEMDVPNM 323

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     ++ +NLF  +      GG +    ++ + E   S+   G      E    
Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 383

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +      ++   +    V  +   +   +  +       + S  L K
Sbjct: 384 FDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTIFSIYLPK 437


>gi|229173899|ref|ZP_04301437.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3]
 gi|228609537|gb|EEK66821.1| hypothetical protein bcere0006_29950 [Bacillus cereus MM3]
          Length = 448

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +++I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLRIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L                + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFSLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  + S+  NG      E+  +
Sbjct: 335 TIQGDENLLHQVWSNVFTNSIKFSNDGGTIEFVVEELESSVMISISDNGIGM-EREEMDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVQVELPK 448


>gi|118477413|ref|YP_894564.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196047040|ref|ZP_03114259.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|118416638|gb|ABK85057.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196022144|gb|EDX60832.1| sensor histidine kinase [Bacillus cereus 03BB108]
          Length = 357

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  + +       + K
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVQKVLDLHRGEIKVESEEGNGTEFIVCIPK 353


>gi|220907210|ref|YP_002482521.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219863821|gb|ACL44160.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 591

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMD-LVAL-----LCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQ 51
           M +        +  + +L     L + I H+I +P+  +    N+ + L+      E + 
Sbjct: 339 MTEQKQAEQERLKAIASLAEVGELAAMIVHEIRNPLTTVWMGLNAFQRLELPHNYRERLD 398

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVS 103
           L    +      L+ + L           I L    +        +        K +   
Sbjct: 399 LAMAEAERLRNLLREILLYAKPQALDPQEIDLNPFIRNILEPMRSLPIALGRSLKFIPAD 458

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +    +  ++++NL   A  ++  G +VT S++         +  NG     PE 
Sbjct: 459 HPLRVVGDQAKLKQVVINLVDNACEAIGEGEEVTCSLERDGRHAHIRIHNNGPAI-PPEL 517

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      +      +    V  +   +   L      D+   +   L 
Sbjct: 518 LDRLTKPFYTTKAAGTGLGLAIVKRIVEAHSGELDICSSPDNGTTVRVGLP 568


>gi|217958236|ref|YP_002336782.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|229137450|ref|ZP_04266061.1| hypothetical protein bcere0013_5820 [Bacillus cereus BDRD-ST26]
 gi|217065748|gb|ACJ79998.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|228646008|gb|EEL02231.1| hypothetical protein bcere0013_5820 [Bacillus cereus BDRD-ST26]
          Length = 463

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 57/219 (26%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++  +     E                +          
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
           ++           + L      I    + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|153002988|ref|YP_001377313.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152026561|gb|ABS24329.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 497

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           A+     L +  L  L  + +   H+I + +  I     +       D  ++    +   
Sbjct: 255 AQKTREVLRADRLATLGGIAAGFAHEIGNSLNVIRGYASVAARELPADAEVKSDVEAIRR 314

Query: 60  A--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                       L F R    +  +      L +  +V+    A     +V      +  
Sbjct: 315 EVTRAAGLIERFLVFARARTVHPIAQPVEPILREAVEVVGPAAAHANVERVVEIAPALPE 374

Query: 112 SRER----AKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                    +  LNL + A  ++   G   +    +   +  +  +  +G      +   
Sbjct: 375 VVADGELLRQAFLNLCVNAVQAMQERGGGTLVARARREGDGLVVEVSDSGPGL-PRDIAA 433

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D    +  +   +    V   A  +   +  E    H       L 
Sbjct: 434 HVFDPFFTTKANGTGLGLAIVRQAAEAHGGTVEVESAPGHGATFRIRLP 482


>gi|309792207|ref|ZP_07686679.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
 gi|308225748|gb|EFO79504.1| multi-sensor signal transduction histidine kinase [Oscillochloris
            trichoides DG6]
          Length = 2607

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 74/236 (31%), Gaps = 25/236 (10%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLS 56
            ++I   + + +      S + H++ +P+ AI   +++L   G       +   + +I+ +
Sbjct: 2360 RDITREIEADEAKRQFISDVSHELRTPLTAIKGYVDVLLLSGTQTLTSDQVSYLGIIKNN 2419

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +      ++ +        S                 +  +  ++   D  V+V    + 
Sbjct: 2420 TNRLKALIEDILEFSRPDASKKLNFTRLSIPEVIDEVVSSLRLEYQRKDMSVEVDAPHDL 2479

Query: 109  IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKF 164
              +  ++    +++ NLF  A      GG + +    +  N     ++  G     PE+ 
Sbjct: 2480 PTVMADQKRITQVVFNLFSNAVKYTFEGGHIHVRAFLNRANMFQVDVEDTGVGM-SPEQR 2538

Query: 165  TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      +            +       L  ++   +            S +L 
Sbjct: 2539 KKLFRPFYRADNPLRDVAGGTGLGLSIAKALIEQHGGEMWVTSEIGKGSTFSFILP 2594


>gi|289550735|ref|YP_003471639.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180267|gb|ADC87512.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           lugdunensis HKU09-01]
          Length = 588

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 57/218 (26%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   +      +  +       
Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPEEIKESLSIVLDETNRLNRLVNELLNVARMD 429

Query: 74  -----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                        +           Q   D          +        S    ++L NL
Sbjct: 430 AEGLSVNKEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPETNDALWYYDSDRIDQVLTNL 489

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTID 177
              A      G  ++I+ +D+   N+  +   G+          F +      +      
Sbjct: 490 IDNATRYTQPGDTISITSEDTDKYNVLHINDTGSGIAPEHLNLVFDRFYKVEASRTRGKQ 549

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   ++  E+   +    +       +  L K
Sbjct: 550 GTGLGLFICKMIIEEHGGTITVSSVVGEGTTFTIKLPK 587


>gi|262394273|ref|YP_003286127.1| signal transduction histidine kinase [Vibrio sp. Ex25]
 gi|262337867|gb|ACY51662.1| signal transduction histidine kinase [Vibrio sp. Ex25]
          Length = 659

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 62/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  ++EL+     D+     E +  I
Sbjct: 413 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGDDASRVQEEVDAI 472

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 473 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 532

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                       +IL+NL M A  ++   G           +         +   G    
Sbjct: 533 HTSVEINRHHLLQILVNLQMNAIHAMNGKGTLTVVSEDWIEEGEVKGAAIHVIDEGCGI- 591

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE   +I      +  +   +       +  +    L  E         S  L K
Sbjct: 592 KPENLNRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGKGSKFSIYLPK 647


>gi|206977479|ref|ZP_03238374.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217959464|ref|YP_002338016.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|206744329|gb|EDZ55741.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217066231|gb|ACJ80481.1| sensor histidine kinase [Bacillus cereus AH187]
          Length = 357

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRIP 352


>gi|62182624|ref|YP_219041.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62130257|gb|AAX67960.1| sensory kinase in two component regulatory system with HydG
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322717121|gb|EFZ08692.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 554

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 329 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMTKEADRLNRV 388

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 389 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 448

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 449 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 507

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 508 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 547


>gi|229592620|ref|YP_002874739.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229364486|emb|CAY52325.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 984

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGEIIEISGQILEQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V             
Sbjct: 805 RVSRIVQSLMSFAHAGGHQNQDEAVCLAEVAQDAIGLLALNRRNFEVQFFNLCDPDHWVD 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P GG V +  +  ++     ++  G+         ++ +
Sbjct: 865 GDSQRLAQVLINLLSNARDATPAGGAVRVKTEVFEHTVDLIVEDEGSGIPQN-IMDRLFE 923

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADTESQRGTRIRVTLPR 975


>gi|229523609|ref|ZP_04413014.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis
           VL426]
 gi|229337190|gb|EEO02207.1| signal transduction histidine kinase [Vibrio cholerae bv. albensis
           VL426]
          Length = 677

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  + EL+      +    +E +  I
Sbjct: 430 LNQTRNKLVVHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELGADASRVEEEIDAI 489

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            L         + +              +      +     + +       ++  +++  
Sbjct: 490 LLQIERIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGSKKRDIEFVLELKA 549

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M A  ++               +      +  ++  G    
Sbjct: 550 HNSVEVNRHQLLQILVNLQMNAIHAMNGKGRITIRSEDWVEEGQNRGAVIHIEDQGCGI- 608

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +I D    +  +   +       L  +    +  +         S  L 
Sbjct: 609 KPENLKRIFDPFYTTKREGTGLGLSVSQSLLSQAGGEIKVQSELGVGSTFSIFLP 663


>gi|197117068|ref|YP_002137495.1| GAF/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197086428|gb|ACH37699.1| sensor histidine kinase response regulator, GAF and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 770

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 61/242 (25%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--------IR 54
           +        M+ +A L   I HD  + + +I    E+  +    +  ++           
Sbjct: 382 ERQLRQAQRMEAIATLAGGIAHDFNNNLASIITCTEMARDDVPPESPLRELLDVVLKSSY 441

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDL 111
                    L F          V     + +   ++   ++    ++          +  
Sbjct: 442 RGRKLVKQILTFCCQGEQERQPVQIEPIVTECLNLMRASLSSSISIRTEMGENLGLIMAD 501

Query: 112 SRERAKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLKING 155
             +  +I++NL   A  ++   G +                      S      ++K  G
Sbjct: 502 PTQIHQIIMNLIANASHAMRHKGGMLDVAVENVGLDTAAVAGFPDLPSGRYLKLTVKDTG 561

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +         +I D    +    +   +    V  +   +   +               L
Sbjct: 562 HGMDQK-TMERIFDPFFTTKSHSEGTGLGLSVVHGIVRNHGGAISVSSKPGGGATFEVYL 620

Query: 214 EK 215
            +
Sbjct: 621 PR 622


>gi|94968760|ref|YP_590808.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550810|gb|ABF40734.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 594

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLE-------LLDEVGIEDEVMQ 51
           + +     + S  + A   L  R+ H++ +P+  +  ++E       ++ E   E     
Sbjct: 351 LLEQRERLVQSERVAAWRELARRLAHELKNPLFPLQLTVENMVKAREVMPEEFDEIFHES 410

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              L +    ++    R +         L  +   E V          +       K+++
Sbjct: 411 ATTLMAEIQNLKGIIQRFSDFSKMPQPQLQAVKVNEIVERVATLHAPALANREHPVKMEM 470

Query: 112 SRER------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +              + L NL + A  ++P+GG +T+     +      +   G    
Sbjct: 471 QLDAAVPVIAADPELLHRSLSNLVLNALDAMPQGGTITMRTAAREETVRIEVADTGTGL- 529

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             E+  ++      +      +    V  +  ++   +  E            L +
Sbjct: 530 TKEECERLFTPYYTTKQHGTGLGLAIVQSVITDHGGTIGVESAPGQGATFIIELPR 585


>gi|37520203|ref|NP_923580.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211196|dbj|BAC88575.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 672

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 4   NICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55
                    +  + +     + + H++ +P+ +I    +LL     +       ++ I  
Sbjct: 281 REQVARQQAEEASRMKDEFLAMVSHELRTPLNSILGWAQLLRARRIDEKAATGALESIER 340

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106
           ++      ++ +                 ++    +    + V         +++     
Sbjct: 341 NARMQNRLIEDLLDISRVVTGQMRLELQPLELSGVIASAVEAVQPAAAVKQIQLRCRIDA 400

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +  +     +I  NL   A    P+GG V + +   +      ++ NG        
Sbjct: 401 AVGPVLGDVDRLHQIAWNLLANAVKFTPQGGTVEVDLAQGEIHAQLVVRDNGIGISPAFL 460

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                                 +    V  L   +      E          +  L 
Sbjct: 461 DQIFERFRQADSTSTRVHGGLGLGLSIVRHLVELHGGTAAAESAGKGQGATFTVRLP 517


>gi|75762098|ref|ZP_00742003.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74490416|gb|EAO53727.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 472

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 19/233 (8%), Positives = 70/233 (30%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60
           + +  +L  M    +   + + H++ +P+  +    ++ L E    ++ ++ + +    +
Sbjct: 231 QTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDES 290

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK-- 108
                 ++  F           +   E  +           + +  ++ ++VS++     
Sbjct: 291 DYITNLVQDLFSLAQIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTL 350

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   ++++N+   A+        + IS+ D       +++  G      +    
Sbjct: 351 LVNLDEQRFEQVIVNILNNAYRHSKEHSHINISITDEHKRISITIEDEGEGIPPEDLPHI 410

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +     +    V  +   +   +      D+       L 
Sbjct: 411 FDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 463


>gi|116748064|ref|YP_844751.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697128|gb|ABK16316.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 557

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 27/232 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIE------------DEVM 50
           + S  + AL  L + I H++ +P+  I      + +LL E  +E             ++ 
Sbjct: 320 VQSSKMAALGKLAAGIAHEVNNPLAVIKEKVGWMKDLLSEEDVEASENFKEFDDAVKKID 379

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
             +  +       L F R        V     + +    +  +    +  ++ +   +  
Sbjct: 380 YHVERARKVTHRLLGFARRMEPIQEQVTMNRVIEETVDFLKNEAHYRNIEIRTTLDPDMP 439

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKF 164
             + +     ++ LN+   A  ++ + G +TIS        E   S+  +G      E  
Sbjct: 440 TTTSDSSQLQQVFLNILNNAIDAIGKNGVITISTGYDLKNRELSVSIADDGPGI-PSEVL 498

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +        +       +  +    +            S  L 
Sbjct: 499 GRVFDPFFTTKEVGKGTGLGLSISYSIVEKLGGTIKVASQVGKGTTFSIHLP 550


>gi|313159288|gb|EFR58653.1| prevent-host-death family protein [Alistipes sp. HGB5]
          Length = 651

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 57/230 (24%), Gaps = 21/230 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN       +    L  + + H+I +P+ AI     LL E     E  + +R+   +  
Sbjct: 281 AKNKAEVSDRLKSAFL--ANMSHEIRTPLNAIVGFSNLLAETDDIGERREYMRVVEENNE 338

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                       G VD      +    +   +       +    +   
Sbjct: 339 LLLKLISDILDLSKIEAGTFEFNYGRVDVNRMCEETVCSLSLKVKDKPVELIFGEHDAQC 398

Query: 111 L----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ N    A      G        +      F ++  G+     E    
Sbjct: 399 CVVGDKNRLIQVITNFINNAVKFTDEGSITLGYRTEGGELL-FHVEDTGSGI-SEEHRQS 456

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D  V   S      +       +  +   R+  E            + 
Sbjct: 457 IFDRFVKLNSFAQGTGLGLSISKSIVEQMGGRIGVESEVGRGSRFWFTIP 506


>gi|303326572|ref|ZP_07357015.1| putative periplasmic sensor signal transduction histidine kinase
           [Desulfovibrio sp. 3_1_syn3]
 gi|302864488|gb|EFL87419.1| putative periplasmic sensor signal transduction histidine kinase
           [Desulfovibrio sp. 3_1_syn3]
          Length = 485

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----------D 47
           +  +    +    L +L  L + I H + +P+  I  S +LL E G              
Sbjct: 246 LESSQNQLVQEKKLASLGVLTAGIAHQLNNPLNNIFTSCQLLRESGAHGGDAGFPAEMLR 305

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            + Q +  +       L F R +      V     +G    ++        R+ +    +
Sbjct: 306 NIHQEVLRARDIVRGLLDFARQSDFSLKPVALADVVGRAVALVAGETPPGLRIDIDVPPD 365

Query: 108 K--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE 162
                  R   ++ +NL + A  ++ R                + +  ++ +G+      
Sbjct: 366 LVLPADGRRLQEVCINLLLNAVQAVSRLPGRISVTARRDEAAAQAVLRVRDSGDGIPEAS 425

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D             +       +   +   +  E  +      +  L 
Sbjct: 426 LG-RIFDPFFTLKGVGKGTGLGLSVAFGIIRRHGGTISVESGEGEGSCFTVRLP 478


>gi|289432115|ref|YP_003461988.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
           sp. GT]
 gi|288945835|gb|ADC73532.1| multi-sensor signal transduction histidine kinase [Dehalococcoides
           sp. GT]
          Length = 581

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + +++        +     + I H++ +PI ++    E L E    D  +          
Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHL 405

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106
            +   +           +  G          +         ++          + V    
Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGITLGVELPE 465

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
               +  +     ++L+NL   A    P+GGK+ I V+      +  +  +G      + 
Sbjct: 466 TLPQVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRTQSQTLVVYVTDSGIGIPEDDL 525

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   +     +       +   +   +  E +       S  L 
Sbjct: 526 TRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLP 579


>gi|220909800|ref|YP_002485111.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866411|gb|ACL46750.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 480

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           +A+     LS +         L + + H++ +P+  +   LE L          + E ++
Sbjct: 242 LAQTFNLMLSRLADAWDQQRQLLNDVSHELRTPLTLVMGYLESLIRRSTNLSSTQLEALE 301

Query: 52  LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +  AI  L+ +                ++     + +   + +            
Sbjct: 302 TAASEANRAIRLLQDLLDLARADSGYLHFRLETLRLNDLIVEAVDMAKQVSHRSILAIAP 361

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E +       + LLNL   A         V IS+  ++ + I  +   G      E 
Sbjct: 362 TEVEAMVDRDRLRQTLLNLLDNAIKYSQPDQPVYISLSSTETQAIIEITDQGVGISLAEQ 421

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +    +         H +    V  L      ++      +     +  L K
Sbjct: 422 SRIFDRFYRVDESRARTTGGHGLGLAIVKSLVEGMGGKITVLSEPNQGSTFTITLRK 478


>gi|196040855|ref|ZP_03108153.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196028309|gb|EDX66918.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 484

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKIMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEK 478


>gi|218897651|ref|YP_002446062.1| sporulation kinase B [Bacillus cereus G9842]
 gi|218540668|gb|ACK93062.1| sporulation kinase B [Bacillus cereus G9842]
          Length = 419

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 73/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 190 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 249

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + +      +     L  +  +I     ++             + 
Sbjct: 250 LNRAQEIIDDYLTFAKPSPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 309

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 310 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 368

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L+    K
Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMYGNLKIRSIVSKGTTLTITFPK 413


>gi|229139865|ref|ZP_04268430.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26]
 gi|228643530|gb|EEK99796.1| hypothetical protein bcere0013_29720 [Bacillus cereus BDRD-ST26]
          Length = 448

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E+  +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|258405345|ref|YP_003198087.1| multi-sensor signal transduction histidine kinase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797572|gb|ACV68509.1| multi-sensor signal transduction histidine kinase [Desulfohalobium
           retbaense DSM 5692]
          Length = 862

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 62/232 (26%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------M 50
            K +   +     +VAL  + S I H+I +P+G I    +LL     E            
Sbjct: 615 QKKMDQKIQQTEKMVALGQVSSGIAHEINNPLGIILCYTDLLKRQLKESPQAVTDVDVIE 674

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKI 109
           Q  R         L+F +              + ++ Q +            +       
Sbjct: 675 QQARNCKKIVTDLLQFSKKQESPKSPEQINAIIQNVAQILRHQLHKNGIDFHLQLDPTLP 734

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPEKF 164
            +     KI   +  +   ++   G+         VQ+       ++  NG         
Sbjct: 735 LVVVSADKIQQVVVNLVLNAMQAVGEQGRIVVESFVQEEGRRVALAVWDNGPGVESS-IR 793

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +    +   +       +  ++   +  E            L 
Sbjct: 794 QKIFDPFYSTKRVGEGTGLGLSVSYGIIQDHGGEITLESEQGQWTRFIVSLP 845


>gi|222096717|ref|YP_002530774.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221240775|gb|ACM13485.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 458

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E+  +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|222094404|ref|YP_002528463.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221238461|gb|ACM11171.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 463

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 60/219 (27%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E     + ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPKQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +                  + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEENKRISITMEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|206974651|ref|ZP_03235567.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|206747294|gb|EDZ58685.1| sensor histidine kinase [Bacillus cereus H3081.97]
          Length = 458

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E+  +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|217960662|ref|YP_002339226.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|217064570|gb|ACJ78820.1| sensor histidine kinase [Bacillus cereus AH187]
          Length = 458

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E+  +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|289433638|ref|YP_003463510.1| two-component sensor histidine kinase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289169882|emb|CBH26422.1| two-component sensor histidine kinase [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 610

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 67/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T        +             ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  +NE   S+   G      +  T               +
Sbjct: 503 IISNANKYSPDGGRISFYLKKYENEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600


>gi|71908630|ref|YP_286217.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71848251|gb|AAZ47747.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 524

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/254 (10%), Positives = 65/254 (25%), Gaps = 41/254 (16%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISP-------IGAIHNSLE----LLDE----- 42
           +       L S  + A+  L + + H+I +P       +G++ N  E    LLD      
Sbjct: 260 LQDAQSQLLQSEKMAAIGQLAAGVAHEINNPVGFVSSNLGSLKNYSEKMITLLDRCRSRE 319

Query: 43  ------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG 84
                               +  E    +   +        F  +        +   G+ 
Sbjct: 320 ASEADFIAADFDYLKEDLADLLRESRDGLGRVTKIVSDLKDFAHIDEAAWQETNLNAGIE 379

Query: 85  DIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTISVQD 142
               V+   +     V               +  ++++NL + A  ++   G +T+    
Sbjct: 380 ATLNVVWHELKYKAEVVRELGELPPVTCIAAQIDQVVMNLLVNAAHAIETRGTITVRTGH 439

Query: 143 SKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPE 200
                   +   G     P    +I +    +        +       +  ++  R+   
Sbjct: 440 DDAWVWIEVADTGKGM-TPAVIQRIFEPFYTTKPVGKGTGLGLSLSYDIVKKHGGRIEVN 498

Query: 201 IIDDHNVVLSALLE 214
                       + 
Sbjct: 499 SEPGKGSTFRVWIP 512


>gi|309791212|ref|ZP_07685744.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226774|gb|EFO80470.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 545

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 65/222 (29%), Gaps = 24/222 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           ++  + + H++ +P+ AI    +LL       +   + E +  I  +       +  +  
Sbjct: 309 SMFLANMSHELRTPLNAILGYAQLLKMGVANNDPVSQQEFLDSILGAGRHLTSLISNVLD 368

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLSRERAKILL 120
                      Y G VD    + ++  ++          +++S   E   +  +  K+  
Sbjct: 369 FSKIEQGKIELYMGPVDVEPLIREVADIVHPLVKQQHNELRISIEPEIGTMLTDGPKLRQ 428

Query: 121 NLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172
            L  +   +       TI   V  +     F++   G      E   ++          V
Sbjct: 429 ILVNLLSNAAKFTEAGTISLHVCAAAEMIEFAVIDTGIGI-SAEHLGKLFQPFSQVDSSV 487

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +D   +       L H     +  E           +L 
Sbjct: 488 TRRVDGTGLGLALSRQLCHAMGGEISVESAVGQGSTFRVVLP 529


>gi|295705557|ref|YP_003598632.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294803216|gb|ADF40282.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 487

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 75/242 (30%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQ 51
           M K +  +L+      +    + + I HD+ +P+  IH   E+L      +    +  + 
Sbjct: 242 MRKELKQSLAKQWQLEEDRKDMTAAIAHDLRTPLTIIHGHTEILVEGSKKDPERLNRYLH 301

Query: 52  LIRLSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV- 102
            I  +++ +I  L  ++             +  +D    + +     +      +   + 
Sbjct: 302 TIYTNTLRSIQLLNQLQEVSVIENPGFAVKSEPIDINTFVYEKADEFQLLCQKKEITFIS 361

Query: 103 -----SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                    +     +  +++L N+        P  G++  +     +E IF +   G  
Sbjct: 362 SIREADGPNQFYGDPQRISQVLDNIITNCIRYTPERGEIAWNTVIHHSEVIFEIHDTGPG 421

Query: 158 --ARFPEKFTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 E+  +       S    H    +  Y    +   +   +  +  +    +   +
Sbjct: 422 FTLSNKEQLFKKFYREDASRTSGHGNLGLGLYIAHSIVKNHGGSITADNKETGGSLFKIV 481

Query: 213 LE 214
           L 
Sbjct: 482 LP 483


>gi|228946855|ref|ZP_04109157.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228812842|gb|EEM59161.1| hypothetical protein bthur0007_29900 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 448

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + + +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDIARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|229075210|ref|ZP_04208204.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18]
 gi|228707987|gb|EEL60166.1| hypothetical protein bcere0024_29510 [Bacillus cereus Rock4-18]
          Length = 448

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDITVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELPK 448


>gi|229091660|ref|ZP_04222861.1| hypothetical protein bcere0021_24650 [Bacillus cereus Rock3-42]
 gi|228691605|gb|EEL45357.1| hypothetical protein bcere0021_24650 [Bacillus cereus Rock3-42]
          Length = 413

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E              
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LS 112
            +  I   ++  A   +  +D +    ++ +VI   + +     +  T +          
Sbjct: 243 RAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKIIIRIEDSGIGM-SQEQINRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLRIRSVVNKGTTLTITFPK 404


>gi|262198315|ref|YP_003269524.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262081662|gb|ACY17631.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 408

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 65/253 (25%), Gaps = 40/253 (15%)

Query: 1   MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------- 50
           +AK     L  +  L  L  L   + H+I +P+  I  +++ L +   + + +       
Sbjct: 152 LAKERAKQLAHADRLAMLGTLAGGVAHEINNPLSFISGNVQELRKNWPQIDQLLSEQIEA 211

Query: 51  ------QLIRLSSMSAIIRLKFMRLA-------------------FGYTGSVDSLIGLGD 85
                 +L  L      I                                 V        
Sbjct: 212 RPDEAEELTYLQEDMTEILDGIHNGITRIAKIVSGLKTFVREKGADWAPFPVKLSFDGAM 271

Query: 86  IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDS 143
           +           +             S++  ++L+NL + A  ++         +     
Sbjct: 272 MLCRGAVREINVESDFPDDLPPVRGDSQQLEQVLVNLCVNASHAMEGRPDQKLWVRSWSE 331

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEI 201
               + ++  NGN     E    I +    +        +       +  ++   +    
Sbjct: 332 DGHVLITVTDNGNGI-PEENLESIWNPFFTTKDVGKGTGLGLSICQNIIQDHGGSIEASN 390

Query: 202 IDDHNVVLSALLE 214
           +D+     +  L 
Sbjct: 391 VDEGGARFTIRLP 403


>gi|218904373|ref|YP_002452207.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218538730|gb|ACK91128.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 458

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + + +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|220923122|ref|YP_002498424.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219947729|gb|ACL58121.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 663

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------------GIE 46
           +       + S  L ++  + + + H+I +PI  I  +LE+  E              + 
Sbjct: 423 LEDTRRQLVMSEKLASIGEITAGVAHEINNPIAVIQGNLEVAREALGSAANEVKTEFDLI 482

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           D+ +  + +     +   +    A        + +    +  V       D  V+++   
Sbjct: 483 DQQVHRVNMIVTRLLQFARPEEYAGYVEAVAPAGVVADCLVLVRHLLERADVTVEIADEA 542

Query: 107 EKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
            +          ++++NL + A  ++P GG + +  +D            +   G     
Sbjct: 543 TRTVEVSRTELQQVVINLMVNAIHAMPEGGVLRLETKDEDRSGTDGVAIKVVDTGVGIPT 602

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            T     +       L       +  +         +  L 
Sbjct: 603 DQLRKIFDPFFTTRTHGGTGLGLSISYTLMARYGGAITVDSEVGRGSAFTVWLP 656


>gi|315918906|ref|ZP_07915146.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313692781|gb|EFS29616.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 873

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 501 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 558

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 559 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYEPSDESLMI 618

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 619 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 676

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 677 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 724


>gi|317050641|ref|YP_004111757.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945725|gb|ADU65201.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 453

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSS-MDLV--ALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVM 50
           + +   +S+   L     +   + H+I +P+ AI+ +++LL+E                 
Sbjct: 216 RELQKRVSANEKLAYIGSISGSLAHEIKNPLNAINLNIQLLEEDLREETIDRDEAMSTCH 275

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------ 104
            +         +   F+  +  ++  +        +  V+E F        +        
Sbjct: 276 VISDEVQRLNELLNDFLIYSRMHSPRLRHESITKTMGAVVELFRKTCMEKNIQLVLEKTS 335

Query: 105 --TGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLAR 159
             +        +  ++L N+   +  +L +            + K  ++  +  NG    
Sbjct: 336 SRSDTISMDRNQIRQVLTNIIKNSIEALEKRSGGIITIAHSINRKRHHVIVIDDNGPGIS 395

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++  ++ D    +  +   +       +   +   L    I      ++  L 
Sbjct: 396 PKDR-EKVYDLFYSTKKEGTGLGLPIAKNIVEAHGGSLEIRSILGRGTTVTITLP 449


>gi|260170560|ref|ZP_05756972.1| two-component system sensor histidine kinase/response regulator,
           hybrid ('one component system') [Bacteroides sp. D2]
          Length = 808

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 55/228 (24%), Gaps = 20/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K       S+    L  + + H+I +P+ AI     L+ E    +E      + + +   
Sbjct: 436 KEKAEMSDSLKSAFL--ANMSHEIRTPLNAIVGFSHLIAESDDAEERKTYYNIVNANNER 493

Query: 63  RLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L+               +  +FG     +    + D                   +   
Sbjct: 494 LLQLINEILDLSKIESGTIEFSFGPASLHNLCREVYDAHIFRTPQGVSLVYEPSDESLMI 553

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ NL   A      G               F +   G     PEK  ++ 
Sbjct: 554 ETDKNRVFQVISNLIGNAVKFTKEGSISYGYKLVDNQIV-FHVTDTGTGI-EPEKVGRVF 611

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +       +      ++            +  L 
Sbjct: 612 ERFAKLNNHAQGTGLGLSICKSIVERLGGKISVSSEFSKGTTFTFTLP 659


>gi|228908873|ref|ZP_04072704.1| hypothetical protein bthur0013_30300 [Bacillus thuringiensis IBL
           200]
 gi|228850740|gb|EEM95563.1| hypothetical protein bthur0013_30300 [Bacillus thuringiensis IBL
           200]
          Length = 801

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKVFIESEVNKGTIVEVTLP 795


>gi|221636013|ref|YP_002523889.1| sensor protein CutS [Thermomicrobium roseum DSM 5159]
 gi|221157568|gb|ACM06686.1| sensor protein CutS [Thermomicrobium roseum DSM 5159]
          Length = 479

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 62/228 (27%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSS 57
           + +   L +        +   H++ +P+  +  ++ELL          +  ++  +    
Sbjct: 235 QQVEHALQAQR---RFVADASHELRTPLTTLRGNVELLQREPPLPLEEQRAILADVAAEI 291

Query: 58  MSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              I  ++ +                V     + D  +  +                 + 
Sbjct: 292 ERMIRLVRELLTLARADAGLRPRLEPVQLGSLVEDAVRQAQLLRPRPVARVRVERDVVVR 351

Query: 111 LSRERAKILLNLF-MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQ 166
             R+    +L +    A    P  G V  +V   +     +++  G        P  F +
Sbjct: 352 ADRDLLYQVLLILLDNALKYTPEDGMVEATVVVEQGRAGIAVRDTGIGIDPAIMPHIFER 411

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              G+   + +   +       L    +  +          + + LL 
Sbjct: 412 FFRGDSARSGEGTGLGLAIAKSLLEAMRGEIRVVSRPGEGSIFTVLLP 459


>gi|108807080|ref|YP_650996.1| PAS [Yersinia pestis Antiqua]
 gi|108812985|ref|YP_648752.1| PAS [Yersinia pestis Nepal516]
 gi|166211373|ref|ZP_02237408.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400352|ref|ZP_02305865.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167424021|ref|ZP_02315774.1| sensory box histidine kinase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|294503176|ref|YP_003567238.1| Pas [Yersinia pestis Z176003]
 gi|108776633|gb|ABG19152.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pestis Nepal516]
 gi|108778993|gb|ABG13051.1| PAS/PAC sensor signal transduction histidine kinase [Yersinia
           pestis Antiqua]
 gi|166207144|gb|EDR51624.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167050301|gb|EDR61709.1| sensory box histidine kinase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167056870|gb|EDR66633.1| sensory box histidine kinase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|262361213|gb|ACY57934.1| PAS protein [Yersinia pestis D106004]
 gi|294353635|gb|ADE63976.1| Pas [Yersinia pestis Z176003]
          Length = 604

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47
           M +             LVA+  L + + H+I +P+ +I    +  +        E  +  
Sbjct: 352 MREVRQLQEEIRRKEKLVAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 411

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
            +++ +   + +    L  +R +      V+    +     +I           + +   
Sbjct: 412 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 471

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162
                        + LLNL++ A  ++ R G + I++    +++   S+   G   R  +
Sbjct: 472 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 531

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +    V  +  E++ R+               + 
Sbjct: 532 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 582


>gi|30263182|ref|NP_845559.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47528547|ref|YP_019896.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186032|ref|YP_029284.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|165868690|ref|ZP_02213350.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167632195|ref|ZP_02390522.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167637220|ref|ZP_02395500.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170684831|ref|ZP_02876056.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170704948|ref|ZP_02895413.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177650266|ref|ZP_02933267.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190564692|ref|ZP_03017613.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227813953|ref|YP_002813962.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229601422|ref|YP_002867446.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254685789|ref|ZP_05149648.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254723196|ref|ZP_05184984.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254738259|ref|ZP_05195962.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254742573|ref|ZP_05200258.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254752574|ref|ZP_05204610.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254761090|ref|ZP_05213114.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30257816|gb|AAP27045.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47503695|gb|AAT32371.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179959|gb|AAT55335.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|164715416|gb|EDR20933.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167514727|gb|EDR90093.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167532493|gb|EDR95129.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129803|gb|EDS98665.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170671091|gb|EDT21829.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172084218|gb|EDT69277.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190564009|gb|EDV17973.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227004608|gb|ACP14351.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229265830|gb|ACQ47467.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 458

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + + +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNIAIEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|118579852|ref|YP_901102.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502562|gb|ABK99044.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 691

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           M +++ F    M+ + LL   I HD  + + AI  ++ L    L        ++     +
Sbjct: 316 MEQDL-FKNQKMESIGLLAGGIAHDFNNLLAAIMGNISLASMLLQPGSRSVSLLAESEKA 374

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDL 111
            + A      +         V  L  +  I +    F+        ++       +    
Sbjct: 375 CLRARDLTLQLLTFSKGGAPVRRLASVEQIVRESASFVVRGSGTFCNFHVANGLWQAEID 434

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLARFPEKF 164
             + ++++ NL + A  ++P GG +TI+  +         +     ++  G     PE  
Sbjct: 435 EGQISQVIHNLVINAVQAMPHGGVITITCSNVAAVTEGEADLVRIDIEDQGEGI-TPEVL 493

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +      +       +   +   +          + S  L 
Sbjct: 494 PRIFDPYFTTKRQGSGLGLASSYSIIRNHGGYIEVNSPPGKGAIFSIFLP 543


>gi|65320510|ref|ZP_00393469.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 448

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + + +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKNIAIEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|332185226|ref|ZP_08386975.1| his Kinase A domain protein [Sphingomonas sp. S17]
 gi|332014950|gb|EGI57006.1| his Kinase A domain protein [Sphingomonas sp. S17]
          Length = 413

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 66/226 (29%), Gaps = 22/226 (9%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK 65
           +  +     +   H++ +P+ +I   +E L     D+  I    ++++   +      ++
Sbjct: 170 AERMRVDFVANASHELRTPLASILGFIETLGDEAGDDPEIRARFLKVMFDEARRMQRLVE 229

Query: 66  FM--------RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            +                S+D    + D  E+ ++      + +      +   ++ +RA
Sbjct: 230 DLISLSRIEADKYRQPAQSMDLADLVNDVWEEFLDSGSPRAEDIACDLAEDLPPIAGDRA 289

Query: 117 KILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD- 169
           ++   L      A         + +S+         S+   G             +    
Sbjct: 290 QLSQMLHNLIGNAMKYGRVETPIRVSLNRDGEMLRLSVADRGEGIAAGHIPRLTERFYRV 349

Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +I    +    V  +   ++ RL           ++  L 
Sbjct: 350 DSGRSRSIGGTGLGLAIVKHIVERHRGRLEITSEVGMGTTVTVRLP 395


>gi|323483424|ref|ZP_08088812.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323691076|ref|ZP_08105358.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323403278|gb|EGA95588.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323504862|gb|EGB20642.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 495

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + ++    L        L S I HD+ +PI AI   +E + +        ++  +  +  
Sbjct: 250 LKESSEEKLQYDKESKELISNISHDLKTPITAIKGYVEGIQDGVASSPEKLDKYIKTIYN 309

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102
            ++    +  +    +   T  +                       +    I +     V
Sbjct: 310 KANDMDRLIDELTFYSKIDTNKIPYNYTKINVAEYFGDCLEDVGLDMETRGIELGYFNYV 369

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I  + +  +++ N+   +   L +    + I ++D  +     ++ NG      
Sbjct: 370 DNDVMIIADAEQMKRVINNIIGNSLKYLDKKKGIINIRIKDDGDFIQIVIEDNGKGIAAK 429

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  R+     +     +  +L K
Sbjct: 430 DLPFIFDRFYRTDSSRNSSKGGSGIGLSIVKKIIEDHGGRIWATSKEGIGTEVHFVLRK 488


>gi|315283630|ref|ZP_07871770.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
 gi|313612735|gb|EFR86737.1| two-component sensor histidine kinase [Listeria marthii FSL S4-120]
          Length = 591

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLK 65
            ++ +   + + H++ +P+ A+    E L +  + DE++       +   S     + + 
Sbjct: 363 ENVRSEFVTNVSHELKTPVTALKGFAETLLDGAMYDEMLLKKFLTIIKEESDRLHRLIMD 422

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------------SR 113
            + L+      V   I + D++ VIE        +      +                  
Sbjct: 423 ILALSRIEQNPVPENIEIVDMDDVIEQSARTIFEMATEKNIQVTIPEKTSTPVTIETDRD 482

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +  +IL+NL   A    P  GKV + + D + E I  +  NG      +   ++ +    
Sbjct: 483 KLQQILINLLSNAINYTPVDGKVEVKLIDHEAEVIIEVTDNGIGIPAKDI-DRVFERFYR 541

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    V  L      R+  E  ++        L K
Sbjct: 542 VDKARSRHSGGTGLGLSIVKHLVENCGGRIEVESQEEVGSTFRVTLSK 589


>gi|312963064|ref|ZP_07777549.1| sensory box histidine kinase [Pseudomonas fluorescens WH6]
 gi|311282575|gb|EFQ61171.1| sensory box histidine kinase [Pseudomonas fluorescens WH6]
          Length = 982

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGEIIEISGQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V             
Sbjct: 803 RVSRIVQSLMSFAHAGAHQNLDEAVCLAEVAQDAIGLLALNRRNFEVQFFNLCDPDHWVD 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P GG V +  +  ++     ++  G+         ++ +
Sbjct: 863 GDSQRLAQVLINLLSNARDATPAGGAVRVKTEGFEHTVDLIVEDEGSGIPQN-IMDRLFE 921

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADTESQRGTRIRVTLPR 973


>gi|228911297|ref|ZP_04075101.1| hypothetical protein bthur0013_54350 [Bacillus thuringiensis IBL
           200]
 gi|228848315|gb|EEM93165.1| hypothetical protein bthur0013_54350 [Bacillus thuringiensis IBL
           200]
          Length = 672

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|229051127|ref|ZP_04194671.1| hypothetical protein bcere0027_50780 [Bacillus cereus AH676]
 gi|228722190|gb|EEL73591.1| hypothetical protein bcere0027_50780 [Bacillus cereus AH676]
          Length = 672

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|229130704|ref|ZP_04259657.1| hypothetical protein bcere0015_51350 [Bacillus cereus BDRD-Cer4]
 gi|228652721|gb|EEL08606.1| hypothetical protein bcere0015_51350 [Bacillus cereus BDRD-Cer4]
          Length = 672

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|229153616|ref|ZP_04281793.1| hypothetical protein bcere0011_51450 [Bacillus cereus m1550]
 gi|228629845|gb|EEK86497.1| hypothetical protein bcere0011_51450 [Bacillus cereus m1550]
          Length = 672

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|218234843|ref|YP_002370233.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218162800|gb|ACK62792.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 672

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|30023484|ref|NP_835115.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|29899045|gb|AAP12316.1| Sporulation kinase [Bacillus cereus ATCC 14579]
          Length = 348

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 122 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 181

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 182 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 241

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 242 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 300

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 301 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 337


>gi|330836603|ref|YP_004411244.1| histidine kinase [Spirochaeta coccoides DSM 17374]
 gi|329748506|gb|AEC01862.1| histidine kinase [Spirochaeta coccoides DSM 17374]
          Length = 418

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 74/233 (31%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLI 53
            +N      S  L  +  + + + H+I +P+ ++   L+LL +       +      + I
Sbjct: 150 KRNDTRLRRSESLAQMTTMAASVAHEIKNPLASMGIHLQLLSKAFERKGELTEDEAERYI 209

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWT 105
            +         + +         +D  + + D           V+ +       +++   
Sbjct: 210 HVLEEEIDRLNRIVVDFLFAVRPMDVHLRIQDLNRLISDLTSFVMPELDEQHVALRLELQ 269

Query: 106 GEKIDLSRE---RAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                LS +     ++LLNL   A  ++   G  +T+S +   N     +   G     P
Sbjct: 270 DYLPRLSLDENLMKQVLLNLIKNAMNAMEPQGGILTVSTKLVGNVVHLKVSDTGTGI-KP 328

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E  ++I +    +      +    V  +  E+   +            + +  
Sbjct: 329 EHLSKIFEPYFTTKSSGTGLGLTVVFKIIKEHGGDISVSSEPGRGTTFTMIFP 381


>gi|330504806|ref|YP_004381675.1| two-component sensor kinase CbrA [Pseudomonas mendocina NK-01]
 gi|328919092|gb|AEB59923.1| two-component sensor kinase CbrA [Pseudomonas mendocina NK-01]
          Length = 984

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREERENDGELTEISGQILEQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                D       +  + +    +             
Sbjct: 805 RVSRIVQSLMSFAHSGSHQRSDEPVCLADVAQDAIGLLSLNKRNFDIQFYNLCDPQHWAC 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P GG + +  + S++     ++  G+         ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLIVEDEGSGI-PRAIIDRLFE 923

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPERQLGTRIRVTLPR 975


>gi|147668883|ref|YP_001213701.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146269831|gb|ABQ16823.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 581

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + +++        +     + I H++ +PI ++    E L E    D  +          
Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHL 405

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106
            +   +           +  G          +         ++          + V    
Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPE 465

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
               +  +     ++L+NL   A    P+GGK+ I V+      +  +  +G      + 
Sbjct: 466 TLPQVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRTQSQTLVVYVTDSGIGIPEDDL 525

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   +     +       +   +   +  E +       S  L 
Sbjct: 526 TRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLP 579


>gi|328467898|gb|EGF38938.1| two-component sensor histidine kinase [Listeria monocytogenes 1816]
 gi|332310706|gb|EGJ23801.1| hypothetical protein LMOSA_11920 [Listeria monocytogenes str. Scott
           A]
          Length = 594

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 367 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 426

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 427 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 486

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 487 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 546

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 547 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 584


>gi|313611039|gb|EFR85926.1| sensor protein kinase WalK [Listeria monocytogenes FSL F2-208]
          Length = 440

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 213 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 272

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 273 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 332

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 333 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 392

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 393 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 430


>gi|290892560|ref|ZP_06555553.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557869|gb|EFD91390.1| sensory box histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 610

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600


>gi|217965615|ref|YP_002351293.1| sensor protein YycG [Listeria monocytogenes HCC23]
 gi|217334885|gb|ACK40679.1| sensor protein YycG [Listeria monocytogenes HCC23]
 gi|307569836|emb|CAR83015.1| sensory box histidine kinase [Listeria monocytogenes L99]
          Length = 610

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600


>gi|118478526|ref|YP_895677.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196042701|ref|ZP_03109940.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225865179|ref|YP_002750557.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|229185457|ref|ZP_04312639.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1]
 gi|118417751|gb|ABK86170.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196026185|gb|EDX64853.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225790052|gb|ACO30269.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|228598045|gb|EEK55683.1| hypothetical protein bcere0004_30100 [Bacillus cereus BGSC 6E1]
          Length = 458

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 70/235 (29%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ +   I S+  NG      E   +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELEFSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|150389322|ref|YP_001319371.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149949184|gb|ABR47712.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 518

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 51/224 (22%), Gaps = 19/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK 65
               +     S + H+I SP+ +I    +LL             + +I   S        
Sbjct: 292 QMEKMRQEFISNVSHEIQSPLASIQGFAQLLQNDELSPEERKHYLSIIETESKRLSKLSD 351

Query: 66  FM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            +                   +D  +    +    +                        
Sbjct: 352 SLLKLAILESDSMRFEPKAYRLDKQLRNLILACEPQWREKRINMEAFLDEVTITADEDMM 411

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172
           +++ +NL   +    P GG V + +       +  +   G      +    F +    + 
Sbjct: 412 SQVWINLIYNSIKFTPEGGSVRVDLNQHGKTIVCKISDTGIGIPEEDQKHIFERFYKADK 471

Query: 173 ESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   +  +         +  L 
Sbjct: 472 SRERSKKGGGLGLSITKKIIDMHYGDISVQSKSGTGTTFTVSLP 515


>gi|46906529|ref|YP_012918.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47091425|ref|ZP_00229222.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|226222924|ref|YP_002757031.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254825659|ref|ZP_05230660.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|254853438|ref|ZP_05242786.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|254932516|ref|ZP_05265875.1| sensory box histidine kinase [Listeria monocytogenes HPB2262]
 gi|255520928|ref|ZP_05388165.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J1-175]
 gi|300764579|ref|ZP_07074571.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|46879794|gb|AAT03095.1| sensory box histidine kinase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47020102|gb|EAL10838.1| sensory box histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|225875386|emb|CAS04083.1| Putative two-component sensor histidine kinase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606808|gb|EEW19416.1| sensory box histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|293584071|gb|EFF96103.1| sensory box histidine kinase [Listeria monocytogenes HPB2262]
 gi|293594904|gb|EFG02665.1| sensory box histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|300514686|gb|EFK41741.1| sensory box histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|328476128|gb|EGF46837.1| two-component sensor histidine kinase [Listeria monocytogenes 220]
          Length = 610

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T                      ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600


>gi|229076179|ref|ZP_04209147.1| hypothetical protein bcere0024_43760 [Bacillus cereus Rock4-18]
 gi|229099150|ref|ZP_04230084.1| hypothetical protein bcere0020_43730 [Bacillus cereus Rock3-29]
 gi|229105298|ref|ZP_04235947.1| hypothetical protein bcere0019_44320 [Bacillus cereus Rock3-28]
 gi|228678224|gb|EEL32452.1| hypothetical protein bcere0019_44320 [Bacillus cereus Rock3-28]
 gi|228684378|gb|EEL38322.1| hypothetical protein bcere0020_43730 [Bacillus cereus Rock3-29]
 gi|228707042|gb|EEL59247.1| hypothetical protein bcere0024_43760 [Bacillus cereus Rock4-18]
          Length = 484

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 70/238 (29%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +            +    +  + ++ +S  G ++      
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSEEGIEVYLQLHP 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N+  I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKIAVTVSSDNDKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESEPREGTSIFFSLEK 478


>gi|229118160|ref|ZP_04247519.1| hypothetical protein bcere0017_44290 [Bacillus cereus Rock1-3]
 gi|228665383|gb|EEL20866.1| hypothetical protein bcere0017_44290 [Bacillus cereus Rock1-3]
          Length = 485

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 70/238 (29%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 242 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 301

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +            +    +  + ++ +S  G ++      
Sbjct: 302 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSEEGIEVYLQLHP 361

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N+  I  +  NG+      
Sbjct: 362 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKIAVTVSSDNDKVIVKVMDNGSGIESDT 421

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 422 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESEPREGTSIFFSLEK 479


>gi|229133944|ref|ZP_04262766.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196]
 gi|228649504|gb|EEL05517.1| hypothetical protein bcere0014_28600 [Bacillus cereus BDRD-ST196]
          Length = 801

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL       +   + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTGNENDQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +G +       +    +  + ++++ +T +   +  
Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDIGVLMDQVLTLLQPQAMMNNIQIRIDFTPDISLIPC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++    +    +        ++ I      G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPRGGEILIQIDKLDNDQIIIRFIDQGCGI-SKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   +  ++  E   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHHGKVFIESEINKGTTVEVTLP 795


>gi|229156832|ref|ZP_04284919.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342]
 gi|228626752|gb|EEK83492.1| hypothetical protein bcere0010_30170 [Bacillus cereus ATCC 4342]
          Length = 448

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   DK + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWRDKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E+  +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|224539382|ref|ZP_03679921.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519002|gb|EEF88107.1| hypothetical protein BACCELL_04287 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 817

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 51/228 (22%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     ++ E    +E  +   +   +  
Sbjct: 430 AKEKAETSDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESENTEERKEYYNIVEANNE 487

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L+               +  +            + D            +         
Sbjct: 488 RLLQLINEILDLSKIEAGIVEFSIAAVRLHPLCKEIHDAHVFRCPSDVELRFDPSDEDIL 547

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A     +G       ++ +    F +   G      +     
Sbjct: 548 IDSDKNRIFQVISNLIGNAFKFTTKGSISYGYHREGETIV-FHVTDTGTGIAPEKIGKVF 606

Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +       +      ++      +        L 
Sbjct: 607 ERFVKANNFAQGTGLGLAICKTIIERLGGKISVTSELEKGTTFIFTLP 654


>gi|326629557|gb|EGE35900.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 552

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 327 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 386

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 387 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 446

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 447 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 505

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 506 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 545


>gi|237717311|ref|ZP_04547792.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|229443294|gb|EEO49085.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
          Length = 403

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI    +L+        +++  ++I  +S   +     
Sbjct: 181 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITFATSTEEKNQYAEIIERNSEMLLNLFND 240

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      ++         D  + L                  V             
Sbjct: 241 ILDLSSLEADSLKFNIRPIKLTDICLQLKQQFCHKTQNGVKLILDDVDADMYASGDWNRI 300

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +I+ NL   A    P+G  +    ++ ++   F +K +G         T          
Sbjct: 301 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKVND 359

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +L  +   R+     +         L 
Sbjct: 360 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 399


>gi|228963748|ref|ZP_04124889.1| hypothetical protein bthur0004_6160 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228795893|gb|EEM43360.1| hypothetical protein bthur0004_6160 [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 464

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 237 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 296

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 297 QIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 356

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ D       +++  G      +                 +
Sbjct: 357 NILNNAYRHSKEHSHINISITDEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRS 416

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 417 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 455


>gi|113868561|ref|YP_727050.1| osmosensitive K+ channel histidine kinase [Ralstonia eutropha H16]
 gi|113527337|emb|CAJ93682.1| Osmosensitive K+ channel histidine kinase [Ralstonia eutropha H16]
          Length = 949

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 60/238 (25%), Gaps = 24/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQL 52
           A+     + S  L + L + + HD+ +P+ ++    E L                 +   
Sbjct: 697 AQQALLAMESERLRSSLLAAVSHDLRTPLTSLIGMAETLQRGTTPLAPEVAETVGAMRDQ 756

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTG 106
            R         L   RL               ++                     +S   
Sbjct: 757 ARRMHAMVANLLDMARLQSRSVALRKEWQSFEELAGAALASLRDALARHRVVVADLSALP 816

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
                     ++L NL   A      G ++ +  + S +     ++ +G         + 
Sbjct: 817 LVECDGVLMERVLCNLLENAAKYTAPGTEIRVRGELSDDAVHLVVEDDGPGVPAAMARQV 876

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII------DDHNVVLSALLEK 215
           F +   G  ES      +       +   +   +  E +      +         L +
Sbjct: 877 FEKFTRGERESATTGVGLGLAVCEAIVQAHGGSIRVEPVHARAQGEGTGARFVVTLPR 934


>gi|228915828|ref|ZP_04079404.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843809|gb|EEM88882.1| hypothetical protein bthur0012_30460 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 448

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + + +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|229122768|ref|ZP_04251977.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201]
 gi|228660632|gb|EEL16263.1| hypothetical protein bcere0016_30600 [Bacillus cereus 95/8201]
          Length = 448

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + + +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|196031953|ref|ZP_03099367.1| sensor histidine kinase [Bacillus cereus W]
 gi|195994704|gb|EDX58658.1| sensor histidine kinase [Bacillus cereus W]
          Length = 458

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + + +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAIEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|146338768|ref|YP_001203816.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146191574|emb|CAL75579.1| putative sensor histidine kinase with a PAS domain [Bradyrhizobium
           sp. ORS278]
          Length = 454

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 71/259 (27%), Gaps = 46/259 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPI--------------GAIHNSLELLDEVG 44
           + +     +    + +L  L + + H++ +PI               A+   LE + E  
Sbjct: 195 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFVYGNVHTLMRYRTALVGYLEAVHEQP 254

Query: 45  IEDE-----------------------VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           + DE                        ++     S       +      G    V+   
Sbjct: 255 VSDEVAALRKELRIDAIVEDFGPLIEGTLEGAVRISEIVKNLRRLSFSKLGEVQRVNIER 314

Query: 82  GLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-- 137
            +              VD +++V           +  ++++NL   A  ++    +    
Sbjct: 315 LINTAVLWAGRTKQHRVDIQIEVEPDLWISGNEGQLHQVIVNLVENAIDAMRITEQPRLV 374

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195
           ++     NE  F +  NG          +I +    +    +   +  +    +  E+  
Sbjct: 375 VAASRQGNEIAFRVTDNGPGIDKDHLS-RIFEPFFTTKRVGEGTGLGLWISYGIVREHGG 433

Query: 196 RLLPEIIDDHNVVLSALLE 214
            L      +     S  L 
Sbjct: 434 ELAASNESEGGATFSFTLP 452


>gi|45440820|ref|NP_992359.1| Signal transduction histidine kinase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|229894056|ref|ZP_04509242.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis Pestoides A]
 gi|229903423|ref|ZP_04518536.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis Nepal516]
 gi|45435678|gb|AAS61236.1| Signal transduction histidine kinase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|229679193|gb|EEO75296.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis Nepal516]
 gi|229703941|gb|EEO90954.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis Pestoides A]
 gi|320014313|gb|ADV97884.1| Sensor protein of zinc sigma-54-dependenttwo-component system
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 607

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIED 47
           M +             LVA+  L + + H+I +P+ +I    +  +        E  +  
Sbjct: 355 MREVRQLQEEIRRKEKLVAIGNLAAGVAHEIRNPLSSIKGFAKYFEGHSPQGSEEQELAK 414

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
            +++ +   + +    L  +R +      V+    +     +I           + +   
Sbjct: 415 VMIKEVDRLNRAVTELLGLVRPSDLRIQLVNINEIIAHSLHLIRQDADSKKITIQFISNE 474

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE 162
                        + LLNL++ A  ++ R G + I++    +++   S+   G   R  +
Sbjct: 475 NLPRVEIDPDRFTQALLNLYLNAIQAMGRAGTLEIALALVEESKLRISVIDTGKGIRAED 534

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +    V  +  E++ R+               + 
Sbjct: 535 L-ENIFNPYFTTKASGTGLGLAIVQKVIEEHQGRITVTSHPQSGTRFDMTIP 585


>gi|42782325|ref|NP_979572.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42738250|gb|AAS42180.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 458

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSMEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E+  +
Sbjct: 345 VIKGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVIISISDNGIGM-EQEEMDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|296124082|ref|YP_003631860.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016422|gb|ADG69661.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 483

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 72/227 (31%), Gaps = 15/227 (6%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55
           + ++    +      A  LL + I H++ +P+ AI + ++LL+   I+      + L+  
Sbjct: 232 LQESQAMLVQHEKQAAFGLLAAGIAHEVGNPLAAISSLVQLLNRRDIDAHTREKLHLVDD 291

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGE 107
                   L+ +        +V++   + ++                             
Sbjct: 292 QLRRIQRTLRELVDFSRPATNVETNCDIHEVLGAALSIAKYYKRKKGKRIVTAFAENIPR 351

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +  +  ++ LNL + A  +   GG++ IS   +       ++ +G+      +  +I
Sbjct: 352 VRAVRDQLVQVFLNLILNALDATEEGGQIHISTSIADGWLRIDIRDDGHGIEPAARS-RI 410

Query: 168 VDGNVESTIDSHDIQFYYVILLAHEN-KIRLLPEIIDDHNVVLSALL 213
                 +      +  +    +  +    R+            +  L
Sbjct: 411 FQPYFTTKSTGTGLGLFVCRNIIEQQLYGRIELTASSSSGSTFTVFL 457


>gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter
           carbinolicus DSM 2380]
 gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine
           kinase [Pelobacter carbinolicus DSM 2380]
          Length = 391

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 75/228 (32%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
           +       L +  L AL  + + + H+I +P+ AI    ++L      +      + +L+
Sbjct: 159 LELAHNEILQAEKLAALGHVSAGMAHEIRNPLNAIGLFAQILKPVLAHDAEKAGYIDKLL 218

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                   I  K +  + G   +++ +  +  I++++E F A      VS       +  
Sbjct: 219 HEVDRIDGILSKLLDASKGPQVTLEPVCLVETIDRILETFSAQLNASGVSVDKHYEQVPP 278

Query: 114 ERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +I  NLF  +   +  GG + + V+         +   G      E  ++
Sbjct: 279 PMMADKGEVEQIFTNLFANSLYEMQHGGALKVGVRYDGYNVTIEVSDTGGGI-PRENLSK 337

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +           V+ +    K  +     +    + +    
Sbjct: 338 IFDPFFTTKTKGTGFGLSVVLRIVKSYKGHINVRSTEGEGTIFNLEFP 385


>gi|315301282|ref|ZP_07872500.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596]
 gi|313630342|gb|EFR98257.1| sensor protein kinase WalK [Listeria ivanovii FSL F6-596]
          Length = 610

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 68/218 (31%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +  + T        +             ++L N
Sbjct: 443 MDGGRERLEKSFVNFTDFFNHIIDRFEMMKNETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  +NE   S+   G      +  T               +
Sbjct: 503 IISNANKYSPDGGRISFYLKKYENEIEVSIADEGLGVPEEDLATIFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLP 600


>gi|262406077|ref|ZP_06082627.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294648144|ref|ZP_06725687.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806365|ref|ZP_06765209.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|262356952|gb|EEZ06042.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636528|gb|EFF55003.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446433|gb|EFG15056.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 396

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 60/220 (27%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI    +L+        +++  ++I  +S   +     
Sbjct: 174 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITFATSTEEKNQYAEIIERNSEMLLNLFND 233

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      ++         D  + L                  V             
Sbjct: 234 ILDLSSLEADSLKFNIRPIKLTDICLQLKQQFCHKTQNGVKLILDDVDADMYASGDWNRI 293

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +I+ NL   A    P+G  +    ++ ++   F +K +G         T          
Sbjct: 294 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAERVATIFRRFGKVND 352

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +L  +   R+     +         L 
Sbjct: 353 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 392


>gi|229011911|ref|ZP_04169091.1| hypothetical protein bmyco0001_23570 [Bacillus mycoides DSM 2048]
 gi|228749325|gb|EEL99170.1| hypothetical protein bmyco0001_23570 [Bacillus mycoides DSM 2048]
          Length = 439

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 208 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 267

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112
           R  ++           +               I  ++      +  +   ++    I  +
Sbjct: 268 RAQAIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNNINITKEFSEGTIIGNT 327

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 328 QHFHQCFLNLIKNSIEAMPCGGDLIISASVSNNKVIIRIQDSGIGM-SQEQINRFGEPYF 386

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    I +    L+    K
Sbjct: 387 STKTKGTGLGTMVAVKIIETMRGSLKIRSIVNKGTTLTITFPK 429


>gi|154495975|ref|ZP_02034671.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC
           29799]
 gi|150274858|gb|EDN01914.1| hypothetical protein BACCAP_00258 [Bacteroides capillosus ATCC
           29799]
          Length = 580

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 53/226 (23%), Gaps = 20/226 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
            +  + +   + + H++ +P+ +I    ++L              + +I +     I  +
Sbjct: 350 RAEGIRSEFTANVSHELKTPLTSIKGFTDMLSSGMVKSEEDRKRFLTMIGVEVDRLIELI 409

Query: 65  KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRE 114
             +          +      S            +          + V+            
Sbjct: 410 NDILRISELESVAIDQCEEASDVLTAARETQTLLEPAAKEAGVTLNVTGQNAMAAIPVSR 469

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++LLNL         +GG V ++V          +   G       +           
Sbjct: 470 LKELLLNLMENGVKYNVKGGSVNVNVSADSAWVTTVVSDTGIGIPEDARKRVFERFFRVD 529

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +    V  +       +  E         +  L +
Sbjct: 530 KGRARKNGGTGLGLAIVKHIIQLYGGTVTLESTLGQGSTFTVKLPR 575


>gi|114778460|ref|ZP_01453305.1| multi-sensor signal transduction histidine kinase [Mariprofundus
           ferrooxydans PV-1]
 gi|114551304|gb|EAU53862.1| multi-sensor signal transduction histidine kinase [Mariprofundus
           ferrooxydans PV-1]
          Length = 721

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 65/243 (26%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQL 52
           + +    +   M++V  L S + HD  + +G I    E+L E   ED         +M  
Sbjct: 470 LLEEQVRHAQKMEVVGQLASGVAHDFNTLLGVILGYSEMLRETLPEDSVNRANIEAIMNA 529

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +    I  + F RL      ++     L D   +++  +     ++         + 
Sbjct: 530 GGRAKALVIQLMDFSRLGTTEQETISLASLLQDSISLLKPSLPEWISIRQDIQENTGMIE 589

Query: 113 RERAKILLNLFMVAHASLP------------------RGGKVTISVQDSKNENIFSLKIN 154
               +I   +  +   +                         +  + +       S+  N
Sbjct: 590 ANAMQIGQVIMNLCMNAADAIGDTAGELRISLMETEVDDSMASAHMVEPGTYLQLSIADN 649

Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G+          + +    +        +    V  +   +   +  E            
Sbjct: 650 GSGM-DEATMQHLFEPFFTTKDIGSGTGLGLAVVHGIIKSHGGFVTVESEPGTGSSFHVY 708

Query: 213 LEK 215
           L K
Sbjct: 709 LPK 711


>gi|89896860|ref|YP_520347.1| hypothetical protein DSY4114 [Desulfitobacterium hafniense Y51]
 gi|89336308|dbj|BAE85903.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 638

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 72/221 (32%), Gaps = 13/221 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K +   L  +DL+  + + I H+I +P+  +   L+ + +     + ++  +L     
Sbjct: 411 LEKEMA-RLERLDLIGQMAAGIGHEIRNPMTTVRGYLQYISKKDKYADEVETFQLMIEEL 469

Query: 61  II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         +   + F        +  L  I  V          + +    +   
Sbjct: 470 DRANEIITEYLSLSQDRVVDFKRINLNTIIQHLYPILSVHTKMEDKSIELNLGSLPDLYL 529

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +E  +++LNL      ++P  G++TIS    +   I  ++  G      E   ++   
Sbjct: 530 DKKELCQLILNLVRNGLEAMPVKGRLTISTYRQQGNVILEVEDQGRGI-PNEIKDKVGTP 588

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              + ++   +       +A  +   +  +        +  
Sbjct: 589 FFTTKLNGTGLGMAICYSIAERHNALIDFQSGP-QGTKVRV 628


>gi|297579033|ref|ZP_06940961.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
 gi|297536627|gb|EFH75460.1| sensor histidine kinase/response regulator [Vibrio cholerae RC385]
          Length = 572

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|270295411|ref|ZP_06201612.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274658|gb|EFA20519.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 388

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 65/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +A+    N       ++  + + H+I +P+ AI    ELL        + + +++++ ++
Sbjct: 144 LAREKAENADRSK--SVFLANMSHEIRTPLNAIVGFSELLASASTDEEKTQFLEIVQSNN 201

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 +             +   F        +  L    ++    +    ++    + 
Sbjct: 202 EMLQQLIADILDLSKIEAGTLEFVFSDVDINQMMSDLEQQFRMRVAELGSGVQIVREASE 261

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           ++  +  +R    +++ N    A      G          +    F +K  G      + 
Sbjct: 262 KEYTMHTDRNRLAQVVSNFMTNALKFTQEGSITLGFRPY-EEGLYFYVKDTGTGIPQEKL 320

Query: 164 FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +   +   +       +  +    +  E  +         L 
Sbjct: 321 PHVFERFVKLKQEKNGTGLGLSICQTIVRKLGGEIGVESEEGAGSTFWFTLP 372


>gi|304316234|ref|YP_003851379.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777736|gb|ADL68295.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 460

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 69/221 (31%), Gaps = 12/221 (5%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60
                 +  L AL  + + I H+I +P+G I    + +  +    + E +++I      A
Sbjct: 239 EKIMRRADRLSALGEMSAGIAHEIRNPLGIIKTIAQTILSESKQDDKEGLEIIIGEVDRA 298

Query: 61  II----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
                  L F +       S +    L +   +I  +        +      +++  +  
Sbjct: 299 DNVIKGLLNFAKPESINKVSKNINNVLEETINIINKYSIKSNVQIIFDRLPDVEVLVDDT 358

Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              +  +N+ + +  ++  GG + +             +  G      +K  ++ +    
Sbjct: 359 LIKQAFINIMINSIQAMSAGGILHLYGNKDSEFLNIYFEDTGIGI-EDDKIDKVFNPFFT 417

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +   +       +  E+   +    I      +   L 
Sbjct: 418 TKNEGTGLGLSITHRIIEEHGGYISLSSIVGVGTNVLVRLP 458


>gi|255008850|ref|ZP_05280976.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313146595|ref|ZP_07808788.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
 gi|313135362|gb|EFR52722.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides fragilis 3_1_12]
          Length = 895

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 59/230 (25%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++     +S  L +   + + H+I +P+ AI     ++ E    +E  +   +   + 
Sbjct: 498 LMESKEKAETSDKLKSAFLANMSHEIRTPLNAIVGFSRIISESENPEERKEYYEIVDANN 557

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-- 107
                              +     G V       +I             ++     E  
Sbjct: 558 ERLLQLINEILDLSKIESGIVEFTYGPVKLHTLCKEIHDAHVFRCPQGVELKFDSPDEAL 617

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   A     +G       Q+++    F +K  G     PEK  +
Sbjct: 618 SIHSDKNRIFQVFSNLIGNAFKFTTQGSVSYGYRQEAEKVV-FYVKDTGLGI-EPEKLGR 675

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        +      +       +       +            +  L 
Sbjct: 676 VFQRFAKLNNFAQGTGLGLSICKTIIERLGGEISVSSEVGTGTTFTFWLP 725


>gi|240142104|ref|YP_002966614.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
 gi|240012048|gb|ACS43273.1| putative multi-sensor Histidine kinase [Methylobacterium extorquens
           AM1]
          Length = 970

 Score =  118 bits (296), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 50/245 (20%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            +     L +    A           + + H+I +P+  +     LL +  ++D     +
Sbjct: 466 RERTARALETAKEAAEAGNRAKTEFVATMSHEIRTPLNGVLGMASLLSDTPLDDRQRHYV 525

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------- 100
                     L  +     ++      I L  I     +       +             
Sbjct: 526 GTIRRCGDALLSIVDDILDFSKLEAGRIDLEHIPFETSEVARSVSDILEPKAAEKGLAIT 585

Query: 101 ---QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKIN 154
               V +            ++L NL   A      G                  +S+   
Sbjct: 586 YSEDVDFPKRSCGDPNRLRQVLWNLVGNALKFTDEGWISIEATVVKGPDGPRLRYSVSDT 645

Query: 155 GNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G       +            +V        +    V  +       L            
Sbjct: 646 GIGIPEEARHRLFRQFEQTDPSVSRRFGGTGLGLAIVRRIVEAFGGELGVVSETGKGSTF 705

Query: 210 SALLE 214
              + 
Sbjct: 706 WFEIP 710


>gi|302875104|ref|YP_003843737.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|307690271|ref|ZP_07632717.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|302577961|gb|ADL51973.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
          Length = 348

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +AKN       +  +  L       + H+  +PI +I   +E++ +  + +         
Sbjct: 110 LAKNFNLMAKELKNIEYLQKDFIVNVSHEFKTPIASIQGFVEIIKDKSLPETKFDEYTDI 169

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------- 106
            +    RL  +         +DS +   +      D       + +              
Sbjct: 170 IIEETKRLSNLSTNILRLSRLDSQMISKNRVIFSLDEQLRKTLLLLEDQWSLKNLELEIN 229

Query: 107 ----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                 I       +I +N+   A       G +++ ++D+ +  I  +   G       
Sbjct: 230 LEKVNYIGDEELIQQIWVNILGNAIKFSYDNGTISVKLKDNPSSVIVEIADQGIGISEEI 289

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+   + + + +    V  +       +  +         +  L K
Sbjct: 290 ENHVFEKFYQGDTSHSKEGNGLGLAIVKRIIEICNGTIYFKTKYGKGTTFTVTLPK 345


>gi|229085493|ref|ZP_04217731.1| hypothetical protein bcere0022_21060 [Bacillus cereus Rock3-44]
 gi|228697798|gb|EEL50545.1| hypothetical protein bcere0022_21060 [Bacillus cereus Rock3-44]
          Length = 418

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 88/224 (39%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56
           M ++    +  M++V+ L + I H++ +P+  +    +LL    +  E  +         
Sbjct: 190 MMRSKLVKMEKMEVVSQLAASISHEVRNPLTVVKGFTQLLKTPDLSQESRERYIEHILGE 249

Query: 57  -SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KID 110
            + + II   ++  A   +  VD++    ++++VI   + +     +  T E      I 
Sbjct: 250 LNRAQIIIDDYLTFAKPASPKVDNIAIDQELKRVISMMMPLCNMNSIHITEELVTGSIIG 309

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++   +  LNL   +  ++P GGK+++     +N+ I  +K +G     PE+  +  + 
Sbjct: 310 NTQHFQQCFLNLIKNSIEAMPNGGKLSVKSSVFENKIIIVIKDSGIGM-TPEQINRFGEP 368

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +     + +       L  + I +    L+    
Sbjct: 369 YFSTKTKGTGLGTMVAVKIIETMNGTLNIKSIVNRGTTLTITFP 412


>gi|229167486|ref|ZP_04295224.1| hypothetical protein bcere0007_24490 [Bacillus cereus AH621]
 gi|228616048|gb|EEK73135.1| hypothetical protein bcere0007_24490 [Bacillus cereus AH621]
          Length = 364

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 77/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 133 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 192

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112
           R  ++           +               I  ++      +  +   ++    I  +
Sbjct: 193 RAQAIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNNINITKEFSEGTIIGNT 252

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 253 QHFHQCFLNLIKNSIEAMPCGGNLIISATVSNNKVIIRIQDSGVGM-SQEQINRFGEPYF 311

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 312 STKTKGTGLGTMVAVKIIETMRGSLKIRSVVNKGTTLTITFPK 354


>gi|162455496|ref|YP_001617863.1| two component sensor kinase [Sorangium cellulosum 'So ce 56']
 gi|161166078|emb|CAN97383.1| two component sensor kinase [Sorangium cellulosum 'So ce 56']
          Length = 520

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 24/232 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60
                +       L  + + H++ +P+ AI     +L+   +  +  +  + + +   S 
Sbjct: 256 QQASAMDRERSAFL--AGLSHELRTPLNAILGFAHVLESEVDGPLSQDAREALSVIRQSG 313

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                               ++L+         +  +            +  RV      
Sbjct: 314 EHLRTLIDDILDLSALETGKLQLSRRAVNLRALVDQVMREASAAARDKPLQLRVTGDHAL 373

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 R   +IL NL   A     RG  VT+++          ++  G      E    
Sbjct: 374 VAHADPRRVRQILTNLVSNAVKFTARGS-VTVNITGRGRYAAIVVQDTGPGIPPEETSAV 432

Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +        S      +       L   +   +  E         +  L 
Sbjct: 433 FEEYRQTGDVRSRRAGTGLGLSIARRLVLMHGGTIQLESELGRGSTFTITLP 484


>gi|47564388|ref|ZP_00235433.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47558540|gb|EAL16863.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 458

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  + S+  NG      E   +
Sbjct: 345 IIQGDENLLHQVWSNIFTNSIKFSNDGGTIEFFVEELESSVMISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHHGNVSVYSTKGEGTTVQVELPK 458


>gi|291514812|emb|CBK64022.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
          Length = 1049

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     +L E   E E  + I +   + 
Sbjct: 677 LRSARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSSILAETDEEQEKREYISIIENNN 736

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +   F      + +    +I ++                 
Sbjct: 737 ALLLQLIGDILDLSKIEAGTLEFNFSDFELNELMHEKENIIRMKTAEGVELIFEPGLDAC 796

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++L+NL   A     +G        +  +   F +   G     PE   +
Sbjct: 797 LFHSDRNRLSQLLINLLTNAAKFTAKGSIRFGYRAE-GSRLRFYVSDTGCGI-PPEGQRR 854

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D  V   S      +       +       +  +  +         L 
Sbjct: 855 IFDRFVKLNSFKQGTGLGLPICKSIVEHLGGEIGVKSEEGRGTTFWFTLP 904


>gi|159900452|ref|YP_001546699.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893491|gb|ABX06571.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 701

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 56/234 (23%), Gaps = 32/234 (13%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMR--- 68
            +     S + H++ +P+ +I    ELL        E  + ++     A    K +    
Sbjct: 459 KMKNEFVSVVSHELRTPLTSILGYTELLLAREFKPVERQEFVQTVYDQANQLSKMVDDLL 518

Query: 69  --------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                           V     + +I + + + ++   R+ +        +  ++ K+  
Sbjct: 519 NLSRLDAGQIKLNRWVVSLHQIIREITKQLNETLSEKHRLLIDIPEGIPPIFADKDKVRQ 578

Query: 121 NLFM---VAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            L      A    P                       ++   I +++  G      +   
Sbjct: 579 ILTNLLSNAIKYSPNGGQVALIVRELRKVPPGAPPLPNERSVIIAVRDQGMGISEEDLPK 638

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          I    +       L   +  R+               L 
Sbjct: 639 LFTRFFRVDNSTTRKIGGTGLGLSITKALIELHGGRIWATSTLGRGTTFWVTLP 692


>gi|328953481|ref|YP_004370815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453805|gb|AEB09634.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 492

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 67/230 (29%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RL 55
            +     L S  L AL  +   I H+I +P+    ++ + + +  +  E  Q        
Sbjct: 262 RQLEAQLLQSQKLAALGVMAGGIAHEIRNPLAVCSSAAQFIMQGDVTPEFRQQCAEKIHR 321

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------SWTG 106
               A + ++ +      +   D               +  ++              +  
Sbjct: 322 GIQRASMIIENLLRFARPSMKTDLKKINLTYLLSETLSLVTNQARIQKIELRAQLPEYAI 381

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
               +     +  +NL + A  ++P GG + I+++    E   ++K  G+     +    
Sbjct: 382 IINGMEGLLQQAFMNLLLNAIRAVPDGGVIDITLKKIGAEAWIAIKDTGHGIEPSDLNN- 440

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +        +       +  ++   +  +            L 
Sbjct: 441 IFDPFYTTAPVGQGSGLGLSICYSIIKQHFGAITVDSQKGEGSTFVVKLP 490


>gi|329116484|ref|ZP_08245201.1| PAS domain S-box protein [Streptococcus parauberis NCFD 2020]
 gi|326906889|gb|EGE53803.1| PAS domain S-box protein [Streptococcus parauberis NCFD 2020]
          Length = 453

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 71/224 (31%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAI------- 61
           L  S + H++ +P+ ++ + LE LDE  I++++        +                  
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGAIKEDIAPSFIKVSLDETNRMMRMITDLLNLSR 270

Query: 62  ------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      M     +  S+ +   L   +  I        R     +      + + 
Sbjct: 271 IDNQATRLTVEMTNFTAFMTSILNRFDLVKNQNTISGKSYEIIRDYPINSIWVEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ + N+ I S+   G      +    F +    + 
Sbjct: 331 TQVVENILNNAIKYSPDGGKITVKMKTTDNQLIISISDQGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  +++  +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLSIAKEIIKQHQGFIWAKSEYSKGSTFTIVLP 434


>gi|229180990|ref|ZP_04308325.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W]
 gi|228602547|gb|EEK60033.1| hypothetical protein bcere0005_43340 [Bacillus cereus 172560W]
          Length = 484

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103
            +      +  + L      +                 +  + ++ +S            
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVRLQLHA 360

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|254413294|ref|ZP_05027065.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196179914|gb|EDX74907.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 498

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           +         +     L     + + H++ +P+ AI     LL    +  + +Q      
Sbjct: 244 LKSEQAARAEAETANRLKDEFLATLSHELRTPLNAILGWAGLLRRKQLSPDKVQRALEVI 303

Query: 58  MSA--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSW 104
                         L   R+  G        + L  I       +     A   ++    
Sbjct: 304 ERNAKSQAQLIDDLLDVSRIIRGNLRLTVIPVDLQQIINAAIDTLQPAADAKSIQIDSFL 363

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              +  +  +  ++   ++     A    P  G+V I ++  +N     ++  G      
Sbjct: 364 EPSQTVIKGDSDRLQQIVWNLLSNAIKFTPTHGQVKIYLEWLENAVQIRVQDTGKGVSVD 423

Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                    +  +G++  +     +    V  L   +   +  E   D         L 
Sbjct: 424 IAPYIFDRFRQAEGSITRSHGGLGLGLAIVRHLVELHGGTVWCESDGDGKGATFIVELP 482


>gi|153827167|ref|ZP_01979834.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
 gi|149738929|gb|EDM53251.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-2]
          Length = 572

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|323488993|ref|ZP_08094230.1| sensor histidine kinase; sporulation kinase [Planococcus
           donghaensis MPA1U2]
 gi|323397385|gb|EGA90194.1| sensor histidine kinase; sporulation kinase [Planococcus
           donghaensis MPA1U2]
          Length = 682

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 72/222 (32%), Gaps = 13/222 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVM 50
           + +N    LS+++L+  + + I H+I +P+  +   L+LL +            +  E +
Sbjct: 459 LYENELKRLSNLELIGQMAAGISHEIRNPMTTVRGFLQLLTDNKELEGYNSYFELMIEEL 518

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                     +                  +  +  + ++          ++     + + 
Sbjct: 519 DRANSIISEFLSMGNTRSSDLKMQNLNAIITDIAPLLKIDTFSQNKFIEIETMDLPDLLL 578

Query: 111 LSRERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              E  ++L+N+      ++  G      +  ++ N  +  ++  G      E   +I  
Sbjct: 579 NRNEIRQLLINICRNGLEAMNPGEMLSIRTYIENDNTVVLEIEDEGMGM-SEEILKKIGT 637

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +  +   +       +A  ++ ++  +   D   + S 
Sbjct: 638 PFYTTKDNGTGLGLGVSYAIAARHRAKIDVQSSSD-GTIFSF 678


>gi|226314835|ref|YP_002774731.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226097785|dbj|BAH46227.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 622

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 70/224 (31%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQ 51
             N      +  L  +  L + I H+I +P+ ++   ++ L            I    + 
Sbjct: 391 RHNEELLRKAEKLSVIGELAAGIAHEIRNPLTSLKGFIQFLYPSMNDNQQYADIMLSELD 450

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I       ++  K   +       +  L  +  + +   +   +D R   ++       
Sbjct: 451 RINFIVSELLVLAKPHSIQIKPLPLIPLLENVLTLLRSEANLKNIDFRTAFAYHPIIAGE 510

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDG 170
             +  ++ +N+   A  ++   G+V I+     N   + +L   G      E   ++   
Sbjct: 511 ENQLKQVFINIIKNAIEAIDGHGEVVIATTLKDNHQVLITLTDTGCGI-SEEMIHKLGAP 569

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  ++   L  +  +    ++   L 
Sbjct: 570 FFTTKENGTGLGLMISSKIMKDHNGSLEIKSREHEGTMVEITLP 613


>gi|73748089|ref|YP_307328.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659805|emb|CAI82412.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 581

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + +++        +     + I H++ +PI ++    E L E    D  +          
Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPITSLKLLTETLQEGAASDPDVAAGFIDKIHL 405

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106
            +   +           +  G          +         ++          + V    
Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLNLQPGDIRTAIKLAAERLSPQAERAGIILGVELPE 465

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
               +  +     ++L+NL   A    P+GGK+ I V+      +  +  +G      + 
Sbjct: 466 TLPRVRLDENRVEQVLVNLVHNAIKFTPKGGKIKIGVRTQSQTLVVYVTDSGIGIPEDDL 525

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   +     +       +   +   +  E +       S  L 
Sbjct: 526 TRVFERFYKVDKSRSGGGTGLGLAISKHIVQAHGGSIWAESVYGKGATFSFSLP 579


>gi|259416294|ref|ZP_05740214.1| histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259347733|gb|EEW59510.1| histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 352

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 17/238 (7%), Positives = 52/238 (21%), Gaps = 27/238 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           +I     +  +     + + H++ +P+ A+   +E L      +    D  ++++   + 
Sbjct: 114 DITDREHASQMRRDFVANVSHELRTPLTALMGFIETLRGAARDDANARDRFLEIMEGEAS 173

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTG 106
                +  +                                                   
Sbjct: 174 RMNRLVGDLLSLNRVESEERVRPKERIDLVAYLGSTIKSLGPIAESGGRNLALEAPDMPI 233

Query: 107 EKIDLSRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           E      +  ++  NL   A              +              +  +G      
Sbjct: 234 EIPADPDQIQQVFTNLIENALKYGGENVTVSLTALDRDPALRCPAVRVQVIDDGPGIDPV 293

Query: 162 EKF---TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +      +    +    V  + + ++ RL  E         + +L 
Sbjct: 294 HLPRLTERFYRADNHRSRELGGTGLGLAIVKHIINRHRGRLRVESDLGKGATFTVILP 351


>gi|228928290|ref|ZP_04091331.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228831337|gb|EEM76933.1| hypothetical protein bthur0010_29890 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 448

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMNVEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 335 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|229081928|ref|ZP_04214420.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2]
 gi|228701516|gb|EEL54010.1| hypothetical protein bcere0023_45560 [Bacillus cereus Rock4-2]
          Length = 484

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
            +      +  + L      +                 +  + ++ +S  G         
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVRLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKIIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|283798611|ref|ZP_06347764.1| sensor histidine kinase [Clostridium sp. M62/1]
 gi|291073595|gb|EFE10959.1| sensor histidine kinase [Clostridium sp. M62/1]
 gi|295090639|emb|CBK76746.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [Clostridium cf. saccharolyticum K10]
 gi|295115714|emb|CBL36561.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [butyrate-producing bacterium SM4/1]
          Length = 496

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 65/239 (27%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++    +        L S I HD+ +PI AI   +E + +          + ++ I  
Sbjct: 251 LKESAEEKVQYDKESKELISNISHDLKTPITAIKGYVEGIQDGVASSPEKLSKYIRTIYN 310

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------------DKRVQV 102
            +      +  +        +                                      V
Sbjct: 311 KANDMDRLIDELTFYSKIDTNRIPYTFSKINVAEYFWDCVEEVGLDMETRGIELGYFNYV 370

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I  + +  +++ N+   +   L +    + I ++D  +     ++ NG      
Sbjct: 371 DEDVLIIADAEQMKRVINNIIGNSLKYLDKKKGIINIRIKDDGDFVQIVIEDNGKGIAAK 430

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  R+     +     +  +L K
Sbjct: 431 DLPYIFDRFYRTDSSRNSSKGGSGIGLSIVKKIIEDHGGRIWATSKEGIGTEIHFVLRK 489


>gi|253700346|ref|YP_003021535.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775196|gb|ACT17777.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 664

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQL 52
           + +        M+ V  L   + HD  + +  I     +L              +++   
Sbjct: 285 LMEEQLRQSQKMEAVGQLAGGVAHDFNNILTVIAGYANMLKMDLPALGNEVRLAEQIATA 344

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              ++      L F R        +D    +  +E  +   I  D +++     + + + 
Sbjct: 345 TERAAELTKGLLAFSRKQPMAPQKLDLGEIVQRVETFLTRVIGEDIQLKTQLLPDSLPVC 404

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTI-------------SVQDSKNENIFSLKINGN 156
            +  +I   L      A  ++  GG  TI                 + +  +  +  NG 
Sbjct: 405 ADMGQIEQVLINLAANARDAMENGGTFTIATGLFEADGSPSAFCGPAGSYAVIIVSDNGK 464

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +    V  +  ++K  +  +       V S  L 
Sbjct: 465 GM-SSETCKRIFEPFFTTKEVGKGTGLGMAIVYGIVQQHKGYITVDSKPGGGTVFSIYLP 523


>gi|52142294|ref|YP_084535.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51975763|gb|AAU17313.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 458

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 228 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSVEERNHYLQIIEGE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 285 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG +   V++ ++  I S+  NG      E   +
Sbjct: 345 TIKGDENLLHQVWSNIFTNSIKFSNEGGTIEFFVEELESSVIISISDNGIGMEKEE-MDR 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +   +           +   L K
Sbjct: 404 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|229017296|ref|ZP_04174200.1| hypothetical protein bcere0030_18510 [Bacillus cereus AH1273]
 gi|229023472|ref|ZP_04179969.1| hypothetical protein bcere0029_18080 [Bacillus cereus AH1272]
 gi|228737825|gb|EEL88324.1| hypothetical protein bcere0029_18080 [Bacillus cereus AH1272]
 gi|228743997|gb|EEL94095.1| hypothetical protein bcere0030_18510 [Bacillus cereus AH1273]
          Length = 351

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        L     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKLRQEFVSNVSHEIQSPLTSIKGFARALQDSNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEKI 109
           +       + +               +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYVPERVTYRLDQQLKQVVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ K     S++  G      +    
Sbjct: 234 QITADQESMSQVWINLIHNSIKFTPSGGMITIQLKEHKEFLEVSIRDTGIGISEEQKQHV 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 294 FERFYKVDSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTKFIVRIP 346


>gi|167746380|ref|ZP_02418507.1| hypothetical protein ANACAC_01089 [Anaerostipes caccae DSM 14662]
 gi|167654373|gb|EDR98502.1| hypothetical protein ANACAC_01089 [Anaerostipes caccae DSM 14662]
          Length = 902

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
            K         +  A L   I HD+ +P+ +I  +  +L        E   ++    +  
Sbjct: 661 QKEAELKAQREEFRANLLRSISHDLRTPLTSISGNAGVLRQSSDQISEEKKQELYTDIYD 720

Query: 55  LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +                             V+ +I                        
Sbjct: 721 DAMWLINLVENLLSVTRIENGTMKIEKEPEIVEEVILEAVKHIDRRKNEHHIHIRIDDDM 780

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++++NL   A     +G  + IS +    + +  +  +G      E  T
Sbjct: 781 MMADMDAKLMIQVIINLVDNAIKYTGKGSHIDISAEKKNGKVLIEVADDGEGI-SDEAKT 839

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D           +  S  +       +   +   +          V S  L+
Sbjct: 840 RLFDMFYTGSKTVADSRRSMGMGLALCKSIVQAHGGTITVRDRKPRGTVFSFELQ 894


>gi|332976995|gb|EGK13806.1| sporulation kinase A [Desmospora sp. 8437]
          Length = 524

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 70/206 (33%), Gaps = 8/206 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
             + + I H++ +P+ A+   L+LL+E    D +       + +       +++      
Sbjct: 25  GQIAAGIAHEVRNPLTAVKGFLQLLEEQANPDYIDIAKTELNDALATLDSLLQVAKPDPE 84

Query: 70  -AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                + S+   +         + +    K+V                K L NL   A  
Sbjct: 85  GETRQSVSLSVELENVLSLFQNQSYSIDVKKVFNDTDATIYGQKNHIKKALFNLVKNAFE 144

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           S+   G +T+    ++N  + S++  G      +    +      +  +   +   +V  
Sbjct: 145 SIEGEGTITLRHDSNENYVVVSIEDTGVGIPKDQLSL-LGTPFFSTKTEGTGMGMAWVYS 203

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           + HE+   +  E  ++     + ++ 
Sbjct: 204 VIHEHGGYIQVESEENVGTTFTIVMP 229


>gi|119469502|ref|ZP_01612406.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
 gi|119447037|gb|EAW28307.1| putative two-component member protein [Alteromonadales bacterium
           TW-7]
          Length = 1107

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 56/242 (23%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L    L+A           + + H+I +P+ +I    +LL +  + +E  + +
Sbjct: 518 RKEYEEKLEKAKLIAEEAAQAKQSFMANMSHEIRTPMNSIIGFSDLLMDTPLNNEQQKHL 577

Query: 54  RLSSMSAIIRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVD 97
              + +A   L+ +                         V   I      +  +  + + 
Sbjct: 578 VTVNNAARSLLRLLNEVLDSAKLERGKLTIEAVHFSLKPVIDSIISTFWLEAKKKDLILH 637

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             ++ S             +IL NL   A      G               F ++  G  
Sbjct: 638 LTIKESVQNTYYGDPDRLRQILTNLIGNAIKFTEHGSVTITVSTTQNGHLFFEVQDTGIG 697

Query: 158 ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                            G          +       L       +      +        
Sbjct: 698 IEKDRVSAIFQPFVQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSEVNKGTCFYFS 757

Query: 213 LE 214
           L 
Sbjct: 758 LP 759


>gi|313890185|ref|ZP_07823820.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121546|gb|EFR44650.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 881

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 65/233 (27%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSM 58
            + I   +    L A L   I HD+ +P+ +I     L+ E G   E  QL         
Sbjct: 639 QQKIELKMQKEQLRANLLRAISHDLRTPLTSISGQARLMMETGETLEKQQLTELATYIYD 698

Query: 59  SAIIRLK---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            ++  +           +      + S +    + +      D         +  + + +
Sbjct: 699 DSMWLINLIENLLSITKLDNDMTLSLSTNIFDEMVEEALKHVDRHLKHHNFILDLSDDLL 758

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
               +     ++L+N+   A    P G ++T++ +      +  +  +G       K   
Sbjct: 759 MAKMDGPLIVQVLINIINNAVKYTPEGSRITLTSKRKDQNLVVEVSDDGPGISDQAKEKI 818

Query: 167 IVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              I       +   +   +         V++   L 
Sbjct: 819 FDLFYTSENASADGKRGLGIGLSLCKSIITAHGGTIYVHDNIPKGVIIGFTLP 871


>gi|291562137|emb|CBL40953.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 495

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++    +        L S I HD+ +PI AI    E L E         D+ ++ I  
Sbjct: 250 LKESTEEKIQYDKESKELISNISHDLKTPITAIKGYAEGLMEGVASSPEKRDKYIRTIYN 309

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------------DKRVQV 102
            +      +  +        +                                      V
Sbjct: 310 KANDMDRLINELTFYSKIDTNKIPYTFSKINVSNYFRDCVEEVGLELEARGIELGYFNFV 369

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFP 161
                 I  + +  +++ N+   +   + +   +      D  +     ++ NG      
Sbjct: 370 DEDVMVIADAEQMKRVINNIIGNSLKYMDKKNGIINIRILDVGDFVQVEIEDNGKGIGQK 429

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    F +    +           I    V  +  ++  ++           +  +L K
Sbjct: 430 ELPYIFDRFYRTDSSRNSSKGGSGIGLSIVKKIIEDHGGKIWATSKLGIGTEIHFVLRK 488


>gi|153807061|ref|ZP_01959729.1| hypothetical protein BACCAC_01338 [Bacteroides caccae ATCC 43185]
 gi|149130181|gb|EDM21391.1| hypothetical protein BACCAC_01338 [Bacteroides caccae ATCC 43185]
          Length = 1340

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 65/237 (27%), Gaps = 25/237 (10%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
             K     L+   L  +  + + H+  +P+  I + +++L +    +  +           
Sbjct: 802  EKQQIKQLNQEKL--VFFTNVSHEFRTPLTLIISHIDILLQKYSLNPSIYNQITKIRKNA 859

Query: 62   IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             ++  +         ++   G   I+Q        +  +                    +
Sbjct: 860  QQMNKLISELLEFRKLEQNYGTIQIKQQDIIVFLKEIYLSFVDYAQQRNINYEFKLPELS 919

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                   +   K+  NL   A       G + +S + + ++   ++   G      +   
Sbjct: 920  VLCWFEPQLMEKVFFNLLSNAFKYTSDKGNIILSGEITNSDIKINITDTGIGISEQDKDK 979

Query: 163  KFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +    + +           I       +  ++   +  + +       +  L +
Sbjct: 980  IFARFFQADNQEKKGSLFSGTGIGLALTRTIVEKHHGEITVKSVVGEGSTFTVRLPR 1036


>gi|222056308|ref|YP_002538670.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221565597|gb|ACM21569.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 821

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           ++    +  ++ + +L   I HD  + +  I  ++ L    LDE       ++    +  
Sbjct: 441 RDELLKMQKLESLGILAGGIAHDFNNVLTGIMGNISLSRMLLDESHRATTTLKSAEKACQ 500

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A      +      +  V   +  G+I +     ++    V   +   +          
Sbjct: 501 RASELAIQLLTFSKGSHPVKKTVSAGNIAKASASRVSDGFSVISVFNIPENLHPVEVDEG 560

Query: 114 ERAKILLNLFMVAHASLPRGGKV------------TISVQDSKNENIFSLKINGNLARFP 161
           +  +   N+ + A  ++P GG                    + +   F+    G      
Sbjct: 561 QIGQAFSNIAINAAQAMPEGGTFTVRAENVALDKANSMSLPAGDYVRFTFSDTGCGIPEE 620

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++ D    +      +       +  ++   +    +     V   LL 
Sbjct: 621 DLK-KVFDPYFTTRAGGSGLGLAAAHSIIGKHGGHIGVSSVVGKGTVFQVLLP 672


>gi|260062083|ref|YP_003195163.1| sensor histidine kinase [Robiginitalea biformata HTCC2501]
 gi|88783645|gb|EAR14816.1| sensor histidine kinase [Robiginitalea biformata HTCC2501]
          Length = 364

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 78/228 (34%), Gaps = 14/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +        ++++  + + I H++ +P+  I    EL+ E   + + ++ +     +A
Sbjct: 136 LIRRQVERTDRLNILGEITAGIAHELNTPLANILGFAELIQERATDPKTIEDLDRIIENA 195

Query: 61  II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKI 109
           I         + F         S+     + ++  ++       +            +  
Sbjct: 196 IFSREVVKKLMFFACEIPQKVESIHLNTAIEEVVSLLTPNFRSKQLTYSSTLPDRDIQLH 255

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++L NL M A  + P   ++TI+V++  N  + S+   G+    P    ++ +
Sbjct: 256 VDRIQITQVLFNLVMNAIYASPEKSRITIAVREKNNRVLISVSDEGSGI-DPAISEKVFE 314

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    +   +    V  +   +   +  +       V +    K
Sbjct: 315 PFFTTKPLGEGSGLGLSVVHGIVSSHGGSITHKPNRPKGTVFTVDFPK 362


>gi|317470787|ref|ZP_07930170.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Anaerostipes sp. 3_2_56FAA]
 gi|316901725|gb|EFV23656.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Anaerostipes sp. 3_2_56FAA]
          Length = 902

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
            K         +  A L   I HD+ +P+ +I  +  +L        E   ++    +  
Sbjct: 661 QKEAELKAQREEFRANLLRSISHDLRTPLTSISGNAGVLRQSSDQISEEKKQELYTDIYD 720

Query: 55  LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +                             V+ +I                        
Sbjct: 721 DAMWLINLVENLLSVTRIENGTMKIEKEPEIVEEVILEAVKHIDRRKNEHHIHIRIDDDM 780

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++++NL   A     +G  + IS +    + +  +  +G      E  T
Sbjct: 781 MMADMDAKLMIQVIINLVDNAIKYTGKGSHIDISAEKKNGKVLIEVADDGEGI-SDEAKT 839

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D           +  S  +       +   +   +          V S  L+
Sbjct: 840 RLFDMFYTGSKTVADSRRSMGMGLALCKSIVQAHGGTITVRDRKPRGTVFSFELQ 894


>gi|229103766|ref|ZP_04234446.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28]
 gi|228679642|gb|EEL33839.1| hypothetical protein bcere0019_29180 [Bacillus cereus Rock3-28]
          Length = 448

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG V   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGMEKEE-MDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELPK 448


>gi|156740610|ref|YP_001430739.1| nitrogen specific signal transduction histidine kinase NtrB
           [Roseiflexus castenholzii DSM 13941]
 gi|156231938|gb|ABU56721.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Roseiflexus castenholzii DSM 13941]
          Length = 516

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 20/229 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
               + +  L A+  L + I H++ +P+ AI   L L  E           +QL      
Sbjct: 272 QTQLVRAEKLAAIGHLAASIAHEVGNPLQAIQGFLALFLEQCPPETPNQHFLQLAEEEID 331

Query: 59  SA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKID 110
                        R        V+    +  +  +    +   +   +            
Sbjct: 332 RIVRVLERLRDLYRPRADVFTHVNVNELIESVLLLTGKQLERSRIQVLRELAPDLPAIQG 391

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFT 165
           ++ +  ++LLNL + A  ++P GG + +                ++   G      +   
Sbjct: 392 VADQLKQVLLNLVLNAAEAMPNGGTLHVQTYRYHPTEGKGAVAIAITDTGIGISPDQLT- 450

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I DG   +      +  Y    +   +  R+  + I         +L 
Sbjct: 451 RIFDGLHTTKERGMGLGLYTSRAIIERHLGRISAQSIPGEGTTFEIVLP 499


>gi|156741101|ref|YP_001431230.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232429|gb|ABU57212.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 1042

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 69/232 (29%), Gaps = 30/232 (12%)

Query: 12   MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---------------LS 56
              + +   + + H++ +P+ +I   +++L +       ++                  ++
Sbjct: 789  ERMKSEFVAMVSHELRTPLTSIKGYIDMLLDGDAGPLAVEHQELLQIVKSNADRLLLLIN 848

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------K 108
             +  + R++  +L           +       +     A  +R+ +  +           
Sbjct: 849  DLLDMSRIEAGKLMLHRAPLDVRPLIRQVATALRPQLDAKHQRLNLDLSETPPDDAPPLM 908

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               +    +IL N+   A    P+GG++++ +         +++  G     PE+  +I 
Sbjct: 909  FGDAARVHQILTNVLSNAIKYTPQGGEISVRLSVEPPWMCIAVQDTGIGL-TPEEQERIF 967

Query: 169  DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D                 +       L   ++ R+  E              
Sbjct: 968  DRFYRVRNRATREASGTGLGLAITRSLVDLHQGRITVESEAGRGSTFRICFP 1019


>gi|78355157|ref|YP_386606.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217562|gb|ABB36911.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 592

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 62/222 (27%), Gaps = 21/222 (9%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMSAII 62
            L A+  L + + H+I +P+ +I            E  ++      ++Q +   +     
Sbjct: 363 KLAAIGSLAAGVAHEIRNPLSSIKGYATYFGTRFAEGSEDRDAARIMVQEVDRLNRVISD 422

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTGEKIDLSRERAKI 118
            +   R +              ++ ++I           +        + +       + 
Sbjct: 423 LIGLARPSDLSLKPSRPESLAENVLRLIRQDAAGKNIDLRFAAADDLPQAVLDPDRVTQA 482

Query: 119 LLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           LLN+ + A  ++              +  + +    F ++  G         T   D   
Sbjct: 483 LLNVCLNALDAMESGGVLTLSVDTDSTSSEGRRLLRFKVRDTGCGITPETLSTMF-DPYF 541

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  +   +   +  +        +S +L 
Sbjct: 542 TTKSQGTGLGLAIVHKIVEAHGGEIAVQSSVGSGTEISLILP 583


>gi|73748020|ref|YP_307259.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659736|emb|CAI82343.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 501

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 62/225 (27%), Gaps = 21/225 (9%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRL 64
           S  + A L S + H++ +P+ +I    + L    +  +       ++ IR  +      +
Sbjct: 265 SEKVKAELLSVVSHELRTPLTSIKGLTDSLLRKDVNWDDNTKKDFLESIRSETGKLSRLI 324

Query: 65  KFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +                 G++  +I    I+                           
Sbjct: 325 DDLLDTTKLERNLLKLKRGKGTILQVIEAIKIDMECLTEKHQVIYDLQDGQSPLFIDKMR 384

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             +++LN+   +        K+ IS +      + ++   G      +          +S
Sbjct: 385 IGQVILNIVGNSVKYSLPSSKIKISSKSLGGHLVVAISDEGRGISGKDIPYVFDYFYQDS 444

Query: 175 TID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +        +       +   +   +  E   D   ++S  + 
Sbjct: 445 KSEKKRNSGMGLGLAICRGIIKAHGGDIWVENAADIGAIVSFTIP 489


>gi|313634988|gb|EFS01372.1| sensor protein kinase WalK [Listeria seeligeri FSL N1-067]
          Length = 610

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  Y-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                           D    + D   +++    + KR              +  ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDXXXMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  +NE   S+   G      +  T               +
Sbjct: 503 IISNANKYSPDGGRISFYLKKYENEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600


>gi|261408736|ref|YP_003244977.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261285199|gb|ACX67170.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 456

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 57/229 (24%), Gaps = 22/229 (9%)

Query: 8   NLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSA 60
            L   ++V   L + + H++ +P+  +   L+LL       E  +   +   +   +   
Sbjct: 217 RLEQSEMVRRNLVADVAHELRTPLTIVRGKLDLLQQNRQPIEPELLLPIQDELIRLTRLV 276

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLS 112
               +           V     +  +   I + +  +        +    +         
Sbjct: 277 GDLHQLSLAEAKQLPLVRKPTDMVVLLSQIRERVEPEAEAKNLSLQLTCATERTSVPVDP 336

Query: 113 RERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
               ++ LNLF+ A    P GG V +S   +         ++  G               
Sbjct: 337 SRITQVFLNLFVNAIRYTPHGGLVHVSLLEESPSGMLRIDIRDTGPGIEEEHLPYLFNRF 396

Query: 171 NVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +           +   +  E         +  L 
Sbjct: 397 YRTDEARARHQGGMGLGLAIAKEFIVSHGGTIQAESKPGQGTTFTVRLP 445


>gi|115376838|ref|ZP_01464061.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115366141|gb|EAU65153.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 791

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 74/240 (30%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
           A+ +   L  S  + ++  L + + H+I +P+  I ++L    E L++ G+ D     +R
Sbjct: 411 ARRLEMQLQLSERMASVGTLAAGVAHEINNPLAYISSNLAFLSEQLEQEGLSDRQRAEMR 470

Query: 55  LSSMSA-----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +   +                F R      G V+    +    +++ + +    ++ + 
Sbjct: 471 DAVQESLEGTRRVRLIVQDLKAFSRADDESQGPVEVHRVVQGSLRLVRNELEHRAQLTLE 530

Query: 104 WTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGN 156
                +        A++L+NL + A  + P       +                ++ NG 
Sbjct: 531 LNTVPLVLGNESRLAQVLVNLLVNALQAFPAERPAGDNRIRIVTRTAAERVHVQVEDNGQ 590

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I D    +        +       +       +  E            L 
Sbjct: 591 GM-TPEVQRRIFDPFFTTKPVGVGTGLGLSICNTIVQGMGGSIEVESTPGVGSTFRLNLP 649


>gi|167630809|ref|YP_001681308.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593549|gb|ABZ85297.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 1200

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 65/241 (26%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+     L +  L +   + + H+I +P+ AI    ELL E  ++ +      +   SA
Sbjct: 633 LARTRDQALEASRLKSEFVANMSHEIRTPMNAIMGMNELLLETDLDAQQRDFAVIVRESA 692

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSW 104
              L+ +     ++      + + + E  + D +                 +   +  + 
Sbjct: 693 EGLLRIINDILDFSKLEAGKMTIDETEFRLVDTVETIADMLSVGARKRGLALSTFIDPAI 752

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-----IFSLKINGNLAR 159
                       ++LLNL   A     +GG   +   D           F +   G    
Sbjct: 753 PAVLRGDEGRLRQVLLNLGGNAVKFTEQGGVTILITPDDPPGVSLLRLRFEVIDTGIGLS 812

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +  ++                   +       +       +  E            +
Sbjct: 813 PVAR-QRLFQPFTQADGSTTRKYGGTGLGLSISRRIIELMGGEIGVESEFGRGSTFWFTV 871

Query: 214 E 214
            
Sbjct: 872 P 872


>gi|157693310|ref|YP_001487772.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
 gi|157682068|gb|ABV63212.1| sensor histidine kinase PhoR [Bacillus pumilus SAFR-032]
          Length = 580

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 69/228 (30%), Gaps = 24/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     + + H++ +PI +I    E L     D+     E + +I   S+     +
Sbjct: 352 QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAIDDKEALTEFLSIILKESVRLETLI 411

Query: 65  KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +         +       +  + I       + +       ++ V    E + +  + 
Sbjct: 412 QDLLDLSKIEQQQFKLNIQEANATEILQEIQVLLNQKATEKGIQLHVRVPKEPVYVMADP 471

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +I LNL   A    P GG VTIS +  K    F +   G   +  E   +I +   
Sbjct: 472 LRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDVADTGIGMKKSEIP-RIFERFY 530

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +    V  L   ++  +            +  L+
Sbjct: 531 RIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSLK 578


>gi|153801730|ref|ZP_01956316.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
 gi|124122754|gb|EAY41497.1| sensor histidine kinase/response regulator [Vibrio cholerae MZO-3]
          Length = 514

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 129 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 188

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 189 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 248

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 249 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 307

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 308 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 366

Query: 209 LSALLE 214
            +  + 
Sbjct: 367 FTLYIP 372


>gi|323132509|gb|ADX19939.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
          Length = 554

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 329 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 388

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 389 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 448

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 449 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 507

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 508 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 547


>gi|255013497|ref|ZP_05285623.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 632

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 65/228 (28%), Gaps = 20/228 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +     L  +    L  + + H+I +P+ AI    +LL   D+     E +++I  ++
Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             M   F      + +  +    ++           + S   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPDNVALIAPKDSPEC 506

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         +++ N    A       G + ++ +   +E  FS+   G+     E    
Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCIILAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I D      +      +       + +    R+               
Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612


>gi|154491811|ref|ZP_02031437.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC
           43184]
 gi|154088052|gb|EDN87097.1| hypothetical protein PARMER_01432 [Parabacteroides merdae ATCC
           43184]
          Length = 628

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 57/232 (24%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +       +  + +   + + H+I +P+ AI     LL +   + DE   L R +   
Sbjct: 393 LIEEKERAEEANKMKSAFLANMSHEIRTPLNAIVGFTNLLQDEKELTDEEKDLFRNTINK 452

Query: 60  AIIRLKFMRLA---------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
               L  +                  F      + L  +     ++        +     
Sbjct: 453 NSNLLLKLINDILELSRIESGRMSFAFDDCSLNELLEEIYQTHHLLMPSNIRFLKEFQET 512

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       +++ N    A     +    +    +  + E    ++  G       +
Sbjct: 513 ELIIHVDRFRFTQVITNFINNAVKFTTKGHILLGAVYKKEEKEVHVFVEDTGKGMSEEAQ 572

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       +A   + R+     +      + ++ 
Sbjct: 573 KKVFERFFKVDEFAQGTGLGLSICQTIAERLEGRITLSSQEGKGSRFTLIIP 624


>gi|150007794|ref|YP_001302537.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376836|ref|ZP_06986791.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|149936218|gb|ABR42915.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266714|gb|EFI08372.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 632

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 65/228 (28%), Gaps = 20/228 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +     L  +    L  + + H+I +P+ AI    +LL   D+     E +++I  ++
Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             M   F      + +  +    ++           + S   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSIKEVINEIVTSFRIKMPDNVALIAPKDSPEC 506

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         +++ N    A       G + ++ +   +E  FS+   G+     E    
Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCIILAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I D      +      +       + +    R+               
Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612


>gi|94264019|ref|ZP_01287820.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455612|gb|EAT05797.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 555

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 74/231 (32%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRL 55
            K       +  L A+  L + + H++ +P+ +I     LL +       + E +++I  
Sbjct: 324 KKKAQLLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLLKDDNLAASQRERLEIIAE 383

Query: 56  SSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWT 105
            +  +   +       +            D    +     ++   +   +    +++   
Sbjct: 384 QTRRSSTIIKALLSFARNSNHTGRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLELQPL 443

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I    E  ++++NL +    ++   G++ +     +   +  ++ NG     PE  +
Sbjct: 444 PPVIADPGELEQVVINLVLNGVQAIGGDGRIRVGTAAQEGRVLLRVEDNGPGI-APENRS 502

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +    +   +       +  +    +      +    L   L 
Sbjct: 503 RIFDPFFSTKPVGEGTGLGLSICAGIIDDLGGSIEVAASREGGAALLVSLP 553


>gi|94267327|ref|ZP_01290846.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93452049|gb|EAT02741.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 555

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 74/231 (32%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRL 55
            K       +  L A+  L + + H++ +P+ +I     LL +       + E +++I  
Sbjct: 324 KKKAQLLFRAEKLAAIGQLSAGVAHELNTPLASILGYARLLLKDDNLAASQRERLEIIAE 383

Query: 56  SSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWT 105
            +  +   +       +            D    +     ++   +   +    +++   
Sbjct: 384 QTRRSSTIIKALLSFARNSNHTGRSRHPCDLNTIVERAIPLLTTDLEKRRIELVLELQPL 443

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I    E  ++++NL +    ++   G++ +     +   +  ++ NG     PE  +
Sbjct: 444 PPVIADPGELEQVVINLVLNGVQAIGGDGRIRVGTAAQEGRVLLRVEDNGPGI-APENRS 502

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +    +   +       +  +    +      +    L   L 
Sbjct: 503 RIFDPFFSTKPVGEGTGLGLSICAGIIDDLGGSIEVAASREGGAALLVSLP 553


>gi|332705700|ref|ZP_08425776.1| putative ATPase [Lyngbya majuscula 3L]
 gi|332355492|gb|EGJ34956.1| putative ATPase [Lyngbya majuscula 3L]
          Length = 1754

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 63/238 (26%), Gaps = 24/238 (10%)

Query: 1    MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEV 49
            + K I  +L        L +   S   H+  +P+  I    E+         +   ++ +
Sbjct: 1494 LEKQIRKSLEREKELTELKSRFISMTSHEFRTPLTTIMGVTEIFKYYSQNWTDEKKQNYL 1553

Query: 50   MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQV 102
             ++         +    + +     G +       ++ +   D        I   + +  
Sbjct: 1554 DRIQVNVKHMLHMLDDVLVVNKANAGKLKFNPAPLNLLEFCRDLVEDIELGIDTQQSIVF 1613

Query: 103  SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            S   E  +++ +   +   L      A    P    +   +   + E IF +K  G    
Sbjct: 1614 SIQCECPEVNFDEKLLRHILINLLSNATKYSPNDSTINFDLICQQEEVIFKIKDQGIGIP 1673

Query: 160  FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    F      N    I    +    V      +   +            +  + 
Sbjct: 1674 EEDQKQLFESFHRCNNVGNIPGTGLGLAIVKQSVEVHGGEITVNSQVGIGTTFTVTIP 1731


>gi|315649482|ref|ZP_07902567.1| histidine kinase [Paenibacillus vortex V453]
 gi|315274955|gb|EFU38330.1| histidine kinase [Paenibacillus vortex V453]
          Length = 559

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 35/244 (14%)

Query: 3   KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           + I   L      A +         + + H+I +P+  +   ++LL +  +++E  +   
Sbjct: 149 EKINHELVQAKEAAEIAVKAKTEFLAMMSHEIRTPMNGVIGMIDLLMDSELQEEQREYAT 208

Query: 55  LSSMSAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDK 98
           +   SA   +        F ++  G     +    L    Q +              +  
Sbjct: 209 IIRNSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLQLSY 268

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKIN 154
            ++               ++L+NL   A                 V++ +    F++K  
Sbjct: 269 YIEERIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLTQVEEDRLTLEFTVKDT 328

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      EK  ++          +        +       L       +  E  ++    
Sbjct: 329 GIGI-SSEKIDRLFKPFSQLDSSMTRKYGGTGLGLAICRSLVQMMGGDITVESKENKGAT 387

Query: 209 LSAL 212
               
Sbjct: 388 FVFT 391


>gi|94969630|ref|YP_591678.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551680|gb|ABF41604.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 570

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 76/239 (31%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---------DEVGIEDEV 49
           + K     L    +  +  + + + H+I +P+  I    +L+         D+     E+
Sbjct: 314 LKKAAERMLHVEKMATIGKMAAVVAHEINNPLSGILTYSKLVKRWIEKGIFDDEPKRHEM 373

Query: 50  ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQ 101
              + L+   S      +K +             I +  I   +             ++ 
Sbjct: 374 AENLDLVATESRRCGDLVKNLLSFSRTNPINLEWIAVNPIVDRVVKLAAHKLEMGGIQIH 433

Query: 102 VSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNL 157
           V    +   +  +     ++LL L M A  ++P GG + I+   + + E +  +K +G  
Sbjct: 434 VDTASDMPVVHADAAQIEQVLLALTMNAIDAMPHGGNLWIATTITDHSELLLQVKDDGMG 493

Query: 158 ARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   ++ +  + +        +       +   +  R+  +         +  L 
Sbjct: 494 I-SSEILPRLFEPFLTTKDTGKGVGLGLAISHNIVERHNGRIEVDSQVGRGTTFNVYLP 551


>gi|148262352|ref|YP_001229058.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
 gi|146395852|gb|ABQ24485.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 885

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 66/244 (27%), Gaps = 33/244 (13%)

Query: 1   MAK-NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQ 51
           M + N    + S   V  L   I HD  + +  I    ++      E+         +++
Sbjct: 503 MEQLNQAQRMES---VGRLAGGIAHDFNNLLTPIIGFADIARREAPENSPTVEKMERILR 559

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---K 108
               +       L F R         D    +    +++   I     +++  T E    
Sbjct: 560 AAFRAKELVQQLLSFGRKQLLDMKITDLNTVVSSFAEILRRTIRESIDIRLRLTPELDGI 619

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153
                   +IL+NL + A  ++   G                   +     +  + ++  
Sbjct: 620 CADKTHIEQILMNLLVNAQDAIDGKGIISVETAPVVLDEEYARHHANVIPGHYVMLAVSD 679

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           +G      E    I +    +    +   +    V  +  ++   +          V   
Sbjct: 680 SGCGM-DRETQDHIFEPFFTTKKAGEGTGLGLATVYGIVKQHGGNVWVYSEPGQGTVFKL 738

Query: 212 LLEK 215
              +
Sbjct: 739 YFPR 742


>gi|229521544|ref|ZP_04410963.1| signal transduction histidine kinase [Vibrio cholerae TM 11079-80]
 gi|229341642|gb|EEO06645.1| signal transduction histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 576

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|147678375|ref|YP_001212590.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146274472|dbj|BAF60221.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 428

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 63/204 (30%), Gaps = 12/204 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAII----RLKFMRLAFGY 73
           I H++ +P+ +I  +L  +++         E +++++ +           L F       
Sbjct: 218 IAHEVKNPLTSIRLALYSIEKKSAWKMDFHEDLKILKEAVDRVSRTTEDLLHFSTDTNLR 277

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI---LLNLFMVAHASL 130
              VD    L  +    +     D  ++ S       +  +  K+     NL   A A+ 
Sbjct: 278 VKEVDLNELLKCLVAEFKKQNGKDIIIETSLNKPVPPVLADCEKLNEIFRNLLSNAVAAT 337

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
             GG V IS   S +    +++  G+     E   +I +    +      +         
Sbjct: 338 GSGGTVRISSSPSFDHVAVTVEDWGSGIPV-EIQQKIFEPFFTTKQSGTGLGLAIAKKNI 396

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   +  +            L 
Sbjct: 397 EAHGGTIEVKSEPGWGTKFIVTLP 420


>gi|91223733|ref|ZP_01258997.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|91191225|gb|EAS77490.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
          Length = 679

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  ++EL+     D+     E +  I
Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGDDASRVQEEIDAI 492

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 552

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                       +IL+NL M A  ++   G           +         +   G    
Sbjct: 553 HTSVEINRHHLLQILVNLQMNAIHAMSGKGTLTVVSEDWIEEGEVKGAAIHVIDEGCGI- 611

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE  ++I      +  +   +       +  +    L  E         S  L K
Sbjct: 612 KPENLSRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGKGSKFSIYLPK 667


>gi|229515810|ref|ZP_04405269.1| signal transduction histidine kinase [Vibrio cholerae TMA 21]
 gi|229347579|gb|EEO12539.1| signal transduction histidine kinase [Vibrio cholerae TMA 21]
          Length = 572

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 187 LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 246

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 247 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 306

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 307 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 365

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 366 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 424

Query: 209 LSALLE 214
            +  + 
Sbjct: 425 FTLYIP 430


>gi|229026129|ref|ZP_04182503.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272]
 gi|228735171|gb|EEL85792.1| hypothetical protein bcere0029_44100 [Bacillus cereus AH1272]
          Length = 484

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +            V    +  + ++ +S  G ++      
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEEGIEVHLQLHS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVLSDNNKVIVKVMDNGSGIEADT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   L+K
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSLKK 478


>gi|206968294|ref|ZP_03229250.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|229068335|ref|ZP_04201638.1| hypothetical protein bcere0025_5500 [Bacillus cereus F65185]
 gi|206737214|gb|EDZ54361.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|228714796|gb|EEL66668.1| hypothetical protein bcere0025_5500 [Bacillus cereus F65185]
          Length = 463

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLVVNLDEQRFEQVII 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHRRIFITIEDEGEGIPPEDLPHIFDRFYRVDKARTRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454


>gi|149179764|ref|ZP_01858269.1| hypothetical protein BSG1_02075 [Bacillus sp. SG-1]
 gi|148851956|gb|EDL66101.1| hypothetical protein BSG1_02075 [Bacillus sp. SG-1]
          Length = 408

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 60/221 (27%), Gaps = 18/221 (8%)

Query: 10  SSMD--LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRL 64
            +    L   + + I H+I +P+  +   L+++D   +      +  L+      A   +
Sbjct: 186 EAEKRGLAGRIAAGIAHEIRNPLTTVRGFLQIMDTKADQETGSLIKSLLIPEIDRANKII 245

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----------LSR 113
                      +    + +              + +  + T                   
Sbjct: 246 TDFLRIAKPLEASMEKVEVESFLTEYIGKFLNSEALLYNITFTCTISEDAKGCFIDGNKE 305

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           E  ++ +NLF  ++ +     ++ I V           K NG+  +       + D    
Sbjct: 306 ELLQVFINLFTNSYQAKEGPLEIMIDVVKKDTNIEIHFKDNGSGIKPSMIP-HVFDPFFT 364

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  D   +       +   +   +            S +L 
Sbjct: 365 TKDDGTGLGLSVSKKIIENHGGDMTVSSNR-EGTTFSIILP 404


>gi|226313959|ref|YP_002773855.1| sporulation kinase B [Brevibacillus brevis NBRC 100599]
 gi|226096909|dbj|BAH45351.1| sporulation kinase B [Brevibacillus brevis NBRC 100599]
          Length = 442

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 70/221 (31%), Gaps = 10/221 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLI 53
           +        ++L++ L + + H++ +P+  +   ++LL E                +   
Sbjct: 200 RKQVERSEKLNLISELAASVAHEVRNPLTVVRGFVQLLREETNPKNVEYIRLVLNELDRA 259

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  +   K             ++  +  I         V+   +          + 
Sbjct: 260 EFIISDYLNLAKPHSETLERLEIAHTVKEVTAIMSSYSVMNRVEIACETEPGLFVESNAV 319

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  + L+NL      S+ +GG + ++V+ + N ++ S+   G     PE+  QI      
Sbjct: 320 KLKQALMNLMKNGIESMGQGGILQVTVRAAGNYHVISIMDEGEGM-TPEQIEQIGLPFYS 378

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +    +  +  +    H   ++  L 
Sbjct: 379 TKEKGTGLGLMVTCRIIEAMQGTIHFQSQHGHGTQVTIQLP 419


>gi|218289583|ref|ZP_03493803.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240233|gb|EED07416.1| multi-sensor signal transduction histidine kinase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 590

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 61/218 (27%), Gaps = 24/218 (11%)

Query: 20  SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM------- 67
           + + H++ +P+  +    E L     D+  +  E+ ++I   ++     +  +       
Sbjct: 360 ANVSHELRTPLSMLQGYTEALLDDISDDPDMRRELTEIIHDETLRMKRLVNDLLNLAQLE 419

Query: 68  -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILLN 121
                 +   VD    +  + +  +   + +  +    +     +  +       ++  N
Sbjct: 420 SGQFKLHFARVDLTQVMRRVARKFQALASDEDHLSFEVSIPDHPVMVDGDEDRLEQVFTN 479

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           L   A      G                 +   G+     +    F +    +     + 
Sbjct: 480 LLDNAFRHTATGTIRFELDIRHD-YAYVRVADTGSGIPEEDVPYIFERFYKADKARTRSR 538

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       L  E++  +L E         + +L 
Sbjct: 539 SGTGLGLAIARQLVIEHRGEILVESRLGEGTTFTVVLP 576


>gi|229030338|ref|ZP_04186384.1| hypothetical protein bcere0028_24090 [Bacillus cereus AH1271]
 gi|228730970|gb|EEL81906.1| hypothetical protein bcere0028_24090 [Bacillus cereus AH1271]
          Length = 432

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 202 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIEHILEELH 261

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
               +           +               I  ++         +   ++   I  ++
Sbjct: 262 HAQGIIDDYLTFAKPASEKLDHISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 321

Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  +    NL      ++P GG + IS   S N+ I  ++ +G+     E+  +  +   
Sbjct: 322 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGSGM-SQEQINRFGEPYF 380

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+  L K
Sbjct: 381 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTSLTITLPK 423


>gi|229072176|ref|ZP_04205384.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185]
 gi|228710914|gb|EEL62881.1| hypothetical protein bcere0025_43410 [Bacillus cereus F65185]
          Length = 484

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 STLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEADT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|218896945|ref|YP_002445356.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218545306|gb|ACK97700.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 357

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ +      +  +G      +    
Sbjct: 240 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 352


>gi|313639666|gb|EFS04457.1| sensor protein kinase WalK [Listeria seeligeri FSL S4-171]
          Length = 610

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 69/218 (31%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  Y-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                           D    + D   +++    + KR              +  ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDXXXMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +  T               +
Sbjct: 503 IISNANKYSPDGGRISFYLKKYEDEIEVSIADEGLGVPDEDLATIFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600


>gi|303248916|ref|ZP_07335164.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302489715|gb|EFL49650.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 472

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 61/230 (26%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48
           ++      L S  L +L  L + + H+I +P+  I    E  +             +  +
Sbjct: 229 LSSREAEILQSKKLASLGTLTAGVAHEITNPVNNISMMAETFETLDEDLSPADRKDMMRQ 288

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           + +            L F +        +     +     +        +  +++    +
Sbjct: 289 IQEECGRIHGIVTNLLDFSKPKTASMRQICLNDLVQGTLPLVRNMLHVSNIDLRLDLAPD 348

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +     ++L+N    A  S+  GG + I+ +         +   G         
Sbjct: 349 SPMVKADVSQMHQVLINCITNAIQSMSPGGGLRIATRADDGTARIVVSDTGKGIPPDVLP 408

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +   +       +   ++ RL  E            L 
Sbjct: 409 HIFDPFFSTKGTEGTGLGLSVSYGIVKNHQGRLRVESTVGAGTTCFIDLP 458


>gi|229102993|ref|ZP_04233682.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28]
 gi|228680408|gb|EEL34596.1| hypothetical protein bcere0019_21450 [Bacillus cereus Rock3-28]
          Length = 801

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 60/225 (26%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + ++++ +T     +  
Sbjct: 632 RIESITNEFMAVAKPQVLKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIPC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795


>gi|229173096|ref|ZP_04300647.1| hypothetical protein bcere0006_22030 [Bacillus cereus MM3]
 gi|228610429|gb|EEK67700.1| hypothetical protein bcere0006_22030 [Bacillus cereus MM3]
          Length = 801

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 60/225 (26%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + ++++ +T     +  
Sbjct: 632 RIESITNEFMAVAKPQVLKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIPC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795


>gi|298530758|ref|ZP_07018160.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298510132|gb|EFI34036.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1186

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 27/239 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            MA       +     +   + + H+I +PI  I   L+LL+   ++ E  QL+ +   SA
Sbjct: 794  MAWEKAEAANKAK--SEFLANMSHEIRTPINGIMGGLQLLEATSLDHEQKQLVEMGIASA 851

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSW 104
                + +      +      + +   +  ++                    +   +    
Sbjct: 852  RRLTRLLTDILDLSRIEAGKMEIRKADFEVDRLCTSIEDLFAASAAEKNVRISCTLDPRL 911

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
                        +ILLNL   A                  Q ++   + S+  +G     
Sbjct: 912  PPILAGDDARIQQILLNLVGNALKFTHDDTVELHWHLLRRQGNELRVLISVADSGLGISD 971

Query: 161  PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +            G      +   +    V+ L       +  E            L 
Sbjct: 972  EKLGEIFNPFVQADGAFTRNFEGAGLGLSIVVRLVQMMGGNISVESTPGEGSTFYVSLP 1030


>gi|206969941|ref|ZP_03230895.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206735629|gb|EDZ52797.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 484

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
            +      +  + L      +                 +  + ++ +S  G         
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVRLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESEIGKGTSIFFSLEK 478


>gi|42779508|ref|NP_976755.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
 gi|42735424|gb|AAS39363.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
          Length = 676

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  +   L+LL E    ++           +  
Sbjct: 450 EQELKRLSNIELIGQMAAGISHEIRNPMTTVRGFLQLLKEENNYEKHNNYFNLMVEELDR 509

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +   E +   
Sbjct: 510 ANSIITEFLSIGNTKKSDLQMLDLNSIIRDIIPLIKIDTHNQNKYIQVDTNDVPELLLNR 569

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  GN    PE   ++    
Sbjct: 570 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQKCVVLAVRDEGNGI-RPEVLEKLGTPF 628

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 629 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 665


>gi|325276185|ref|ZP_08141988.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp.
           TJI-51]
 gi|324098681|gb|EGB96724.1| multi-sensor signal transduction histidine kinase [Pseudomonas sp.
           TJI-51]
          Length = 989

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 72/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          +  
Sbjct: 736 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEITELSS 795

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++   +  S      + F      +          +       +  +      V     
Sbjct: 796 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 855

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +  A++L+NL   A  + P G  V +  + S++     ++  G+     
Sbjct: 856 CDPDHWVEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEASEHTVDLIVEDEGSGIPKN 915

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 916 -IQDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 974


>gi|313625271|gb|EFR95100.1| sensor protein kinase WalK [Listeria innocua FSL J1-023]
          Length = 274

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 47  FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 106

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T        +             ++L N
Sbjct: 107 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 166

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 167 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 226

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 227 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 264


>gi|313620815|gb|EFR92041.1| sensor protein kinase WalK [Listeria innocua FSL S4-378]
          Length = 610

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T        +             ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600


>gi|117168621|gb|ABK32285.1| Jer5 [Sorangium cellulosum]
          Length = 508

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           MA+++     +    A L   + HD+ +P+ A+  S+ +LD     +E  V + + L   
Sbjct: 262 MAESLERQREAQ--FAFL-GGVAHDLRNPLSALRLSVHVLDADNRPLESSVRRTMALVGR 318

Query: 59  SAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107
                 +     +  +      +D  +   D+  + ++ + + + V      E       
Sbjct: 319 QVDRLDRMVGDLLDASQIEACKLDLRVEERDLRDLAQEAVDLYRPVSPEHPIELSLPETP 378

Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +    ++L NL   A    P GG+V ++V+        +++  G      +   
Sbjct: 379 VLVRCDATRIEQVLNNLLSNALKYSPAGGQVDVAVRAGGEGAEIAVRDRGLGIEPEDL-A 437

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + +          +I    +       +   +  RL  E       V    L +
Sbjct: 438 HLFEPFRRLKSTSGSIPGTGLGLAVAKRIVEAHGGRLFVESRPGAGSVFRIELPR 492


>gi|16799393|ref|NP_469661.1| hypothetical protein lin0316 [Listeria innocua Clip11262]
 gi|16412745|emb|CAC95549.1| lin0316 [Listeria innocua Clip11262]
          Length = 610

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +P+ ++H+ LE L     ++  I    +++ +  +   I  +  +     
Sbjct: 383 FVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSR 442

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
             G  + L           + I     +    T        +             ++L N
Sbjct: 443 MDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPKEPVIIEIDEDKVMQVLDN 502

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A+   P GG+++  ++  ++E   S+   G      +                  +
Sbjct: 503 IISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREM 562

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  E       ++   L 
Sbjct: 563 GGTGLGLAIAREVIEAHGGRIWAERNKSKGTIIKFTLP 600


>gi|295400062|ref|ZP_06810042.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110689|ref|YP_003989005.1| histidine kinase [Geobacillus sp. Y4.1MC1]
 gi|294977841|gb|EFG53439.1| histidine kinase [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215790|gb|ADP74394.1| histidine kinase [Geobacillus sp. Y4.1MC1]
          Length = 367

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 57/217 (26%), Gaps = 14/217 (6%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             + L+  + S   H+  +P+ AI   ++LL     +   + +I         R+     
Sbjct: 152 DRLTLLGQMSSSFVHEFRNPLTAIIGFVQLLKMEHPDLPYLNIIDHELQQLKFRISQFLH 211

Query: 70  AFGY---------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           A                     + +          V   V V           +  ++ +
Sbjct: 212 ASRQEIVESEKETFSLSQLFEEIIEFLYASIVDGDVQISVSVDSAIHIFAYKDQLRQVFI 271

Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           N+ + +  ++    K                  +  NG      E    I +    +   
Sbjct: 272 NILLNSIEAVKEKDKPRCIYIDAYRQGESVYIKIINNGPAI-PEEMVKTIFEPFFTTKKL 330

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I  Y    +  ++  ++     + H    S  L 
Sbjct: 331 GTGIGLYICKKIIEDHGGQITCTSNE-HMTSFSISLP 366


>gi|320160738|ref|YP_004173962.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319994591|dbj|BAJ63362.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 521

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 59/226 (26%), Gaps = 20/226 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKF 66
            + +L +   S + H++ +P+  I   +  L       +       +++    A      
Sbjct: 295 QAEELKSTFISIVSHELKTPVALIKGYVSTLRREDASWDPEIIQDSLKVIEEEADRLAVM 354

Query: 67  MRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +      +              SL  L               R+ V +  +   +  +  
Sbjct: 355 IENLLDASRLQAGGLTLKKSDLSLPELARRVAQRMQTQTSSHRIVVDFPDDFPIVLADEG 414

Query: 117 KILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFTQI----VDG 170
           ++   L  +   ++      ++ +  +   N+ I  +   G      +          + 
Sbjct: 415 RLQQVLTNLIGNAIKYAPGGEIRVHGEARGNQIIVCVSDQGPGINPEDVPHVFDRFYRNP 474

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLEK 215
                     +  Y    +   +  R+  +         +   L +
Sbjct: 475 EAAKKTKGAGLGLYLSRAIIEAHGGRIWVDSHPGQQGARICFTLPR 520


>gi|292491779|ref|YP_003527218.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580374|gb|ADE14831.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 386

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 65/234 (27%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM-------- 50
           +    ++  + L   + + + H++  P+ AI +  E    LL         +        
Sbjct: 150 QAKLAHMERLSLAGGMAAGLAHELNQPLAAIVSYSEACLNLLHSGKAGTPKLIKIMERIV 209

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106
           +  + +                    V+  + +G+   +IE  I   K         W  
Sbjct: 210 EQGQRAGKITHRLKDLTGKTTRQRIPVNLNVLIGETINLIEAKIRERKVKLRLDLADWLP 269

Query: 107 EKIDLSRERAKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  ++L+NL   +  ++      +      +   +      +++ +G      
Sbjct: 270 PVEANPLQLQQVLVNLIQNSLEAMSDIEAHQRRLFIGTAHTASGAIEVAVRDSGPGL-TR 328

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   Q+    V +      +       +   +  +L               L +
Sbjct: 329 EILEQLFQPFVTTKPYGMGLGLSISKSIIEAHGGQLWIISNPGKGGTFHFTLPR 382


>gi|270308781|ref|YP_003330839.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154673|gb|ACZ62511.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 737

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 67/234 (28%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +N      +     L A+  + + I H+I +P+  +    ELL    D        +Q+I
Sbjct: 358 ENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIGFSELLATREDLPKDVMADLQVI 417

Query: 54  RLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
              S          L F R        +D    + +  +             +       
Sbjct: 418 NHGSQRVVEIVRRLLTFARQNKPVKTLLDVHELIDNTLEFRGYVFKTANIEIIRRYDLNL 477

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
                   +  ++ LNL + A  ++ +       TI+   +       +  +G      E
Sbjct: 478 PWITADPGQLQQVFLNLIINAEQAMRKAHDGGKLTITTAQTNKFFSIRIADDGPGM-TAE 536

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I      +    +   +     + +  ++   +  E   D     +  L 
Sbjct: 537 IKAKIFQPFFTTKGPKEGTGLGLSLAMAIILDHHGTIDVESEYDKGATFTINLP 590


>gi|153954094|ref|YP_001394859.1| hypothetical protein CKL_1469 [Clostridium kluyveri DSM 555]
 gi|219854707|ref|YP_002471829.1| hypothetical protein CKR_1364 [Clostridium kluyveri NBRC 12016]
 gi|146346975|gb|EDK33511.1| KdpD [Clostridium kluyveri DSM 555]
 gi|219568431|dbj|BAH06415.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 898

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------------EVGI 45
            K I   +    L   L   I HD+ +P+ +I  +  +L                 ++  
Sbjct: 658 QKQISMQIQQEKLRGNLLRTISHDLRTPLTSISGNAGILMGNSKVLSEAQKKGLYTDIYD 717

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   +  +  + +S                 ++ +I                + +     
Sbjct: 718 DSMWLINLVENILSITRIEDGKINLNLQPELLEEIIAEALCHINRNSVNYHIETIVEDEL 777

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 SR   ++++N+   A    P G  + IS +  K   +  +  +G      E   
Sbjct: 778 IMAKVDSRLIIQVIINIVDNAIKYTPPGSHIVISAKRRKQFILVEIADDGPGI-EDEAKD 836

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D           +     +       + H +   +  +       V+   L+
Sbjct: 837 RLFDMFYTVDNIHGDSRRGLGLGLSLCKSIVHAHGGTIYVKDNIPQGTVICFTLQ 891


>gi|228899335|ref|ZP_04063598.1| hypothetical protein bthur0014_5590 [Bacillus thuringiensis IBL
           4222]
 gi|228860366|gb|EEN04763.1| hypothetical protein bthur0014_5590 [Bacillus thuringiensis IBL
           4222]
          Length = 464

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 237 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 296

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 297 QIEQHSFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 356

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ D       +++  G      +                 +
Sbjct: 357 NILNNAYRHSKEHSHINISITDEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRS 416

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 417 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 455


>gi|75906836|ref|YP_321132.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700561|gb|ABA20237.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 472

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 77/238 (32%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51
           +A+ +   LS +    +      S + H++ +P+  ++  L+ +L        ++ E ++
Sbjct: 235 LAQTLTMLLSRLAQSWEQEREFVSNVSHELRTPLTIVYGYLQSVLRRQNNLTPLQQEALE 294

Query: 52  LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +   I  L+ +           +    +      + +I  + E +      ++ +
Sbjct: 295 IAASEAERTIRLLQDLLDLARADSGYLYFQMKTYVLNDIVAEIVVMAEKYSDRLITIEST 354

Query: 104 WTGEKIDLSR-ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +  ++ +      ++LLNL   A         +T  +   ++  I  +   G       
Sbjct: 355 ISPIEVKVDYSRFKQVLLNLIDNAVKYSEADTPITFKLDQLQDTAIIQVCDQGYGIPLQH 414

Query: 163 ---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +    +   +       +    V  L       +  +       + + +L +
Sbjct: 415 QARIFERFYRIDESRSQATGGCGLGLSIVKTLVEGMGGSVSVQSKLGEGSIFTIILPR 472


>gi|330960811|gb|EGH61071.1| sensor histidine kinase [Pseudomonas syringae pv. maculicola str.
           ES4326]
          Length = 982

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V      +     I
Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAI 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  +  ++     ++  G+         ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVKSEVFEHTVDLIVEDEGSGI-PKAIMDRLFE 921

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973


>gi|256840060|ref|ZP_05545569.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738990|gb|EEU52315.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 632

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 66/228 (28%), Gaps = 20/228 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +     L  +    L  + + H+I +P+ AI    +LL   D+     E +++I  ++
Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             M   F      + +  +    ++           + S   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDFKFADMSVKEVINEIVTSFRIKMPDNVALIAPKDSPEC 506

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         +++ N    A       G +T++ +   +E  FS+   G+     E    
Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCITLAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I D      +      +       + +    R+               
Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612


>gi|228906399|ref|ZP_04070282.1| hypothetical protein bthur0013_5810 [Bacillus thuringiensis IBL
           200]
 gi|228853215|gb|EEM97989.1| hypothetical protein bthur0013_5810 [Bacillus thuringiensis IBL
           200]
          Length = 424

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 197 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 256

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 257 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCSPTLLVNLDEQRFEQVIV 316

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ +       +++  G      +                 +
Sbjct: 317 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 376

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      +H       L 
Sbjct: 377 TGGTGLGLSIVKEIVELHGGNITVTSEVNHGSCFIISLP 415


>gi|253698713|ref|YP_003019902.1| histidine kinase [Geobacter sp. M21]
 gi|251773563|gb|ACT16144.1| histidine kinase [Geobacter sp. M21]
          Length = 588

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 54/222 (24%), Gaps = 25/222 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74
           +   + + H+I +P+  +    ELL    ++++     ++   S    L  +      + 
Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHSELDEKQKSYAKMLHHSGESLLDIINDILNISK 257

Query: 75  ----------GSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKIL 119
                        D         ++  +        V+ +++               ++L
Sbjct: 258 IEAGKLEIERIPFDLHETARGAVELYREVGRGKGVAVELQIEEDVPRCVAGDPNRLRQVL 317

Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIV-----DG 170
           +N+         +G             +     F +K  G                  DG
Sbjct: 318 INVVNNGLKFTEKGSVQVRVSLVEQNQNGQYVGFEVKDTGIGIPADSIGAIFDLFAQVDG 377

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +         +       L       +  E         + +
Sbjct: 378 STTRKYGGTGLGLAIAKQLVELMGGEIGVESEPGQGSTFTFI 419


>gi|254229540|ref|ZP_04922953.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|151937913|gb|EDN56758.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 682

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 62/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  ++EL+     D+     E +  I
Sbjct: 436 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGDDASRVQEEVDAI 495

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 496 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 555

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                       +IL+NL M A  ++   G           +         +   G    
Sbjct: 556 HTSVEINRHHLLQILVNLQMNAIHAMNGKGTLTVVSEDWIEEGEVKGAAIHVIDEGCGI- 614

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE   +I      +  +   +       +  +    L  E         S  L K
Sbjct: 615 KPENLNRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGKGSKFSIYLPK 670


>gi|125623280|ref|YP_001031763.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492088|emb|CAL97017.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070031|gb|ADJ59431.1| sensor histidine kinase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 475

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 31/229 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67
           L  S + H++ +P+ ++   LE L++  I+D+          +             L   
Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIDDKETASSFIGVSLTETNRMIRMISDLLTLS 289

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112
           R+          +I L        + +                   R            +
Sbjct: 290 RMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDT 349

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166
            + A+++ N+   A    P+GG +TI V+  + + + S+K  G            ++F +
Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITIYVETRERDVLISIKDEGMGIPKSDLLKIFDRFYR 409

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           + + +  S +    +    V  +   +   +      +      S  L 
Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|53712152|ref|YP_098144.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52215017|dbj|BAD47610.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 929

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK     +  +    L  + + H+I +P+ AI     LL   +++    E +++++ ++ 
Sbjct: 694 AKEKAETMDRLKSAFL--ANMSHEIRTPLNAIVGFSGLLVDTEDMEERCEYIKIVQENND 751

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                  G  D  +   DI +  +  +     +          
Sbjct: 752 LLLQLISDILDLSKIEAGTFEFTYGETDVNMLCEDIVRSSQIKVPQGVELVFDPHPSDCT 811

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R    +++ N    A      G  + +  +  +    F +   G      +     
Sbjct: 812 VISDRNRLHQVISNFVNNALKFTSSGS-IHVGYEKKEEGVEFYVSDTGIGISKEQLTHIF 870

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S I    +       +  +    +  +  +         + 
Sbjct: 871 ERFVKLNSFIHGTGLGLSICKSIVEQLGGVIGVDSEERKGSRFWFTIP 918


>gi|228954943|ref|ZP_04116961.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228804764|gb|EEM51365.1| hypothetical protein bthur0006_43090 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 484

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 STLYVTADCEKINRVISNLVHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIEADT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|222096169|ref|YP_002530226.1| sporulation kinase b [Bacillus cereus Q1]
 gi|221240227|gb|ACM12937.1| sporulation kinase B [Bacillus cereus Q1]
          Length = 422

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++    +  M++V+ L + I H++ +P+  +    +LL                +++ + 
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112
            +       L F + A      +     L  +  +I     ++         T   +   
Sbjct: 252 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLLKNGIEAMPNGGTLHISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +       L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMHGSLKIRSVMNKGTTLTITFPK 413


>gi|301308440|ref|ZP_07214394.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300833910|gb|EFK64526.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 659

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 60/230 (26%), Gaps = 19/230 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  L +   + + H+I +P+ AI    ++L +    +   +   +   + 
Sbjct: 425 LKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEEDRETRQEFADIIQNNN 484

Query: 61  IIRLK-------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            +  +                        + +L+       ++     V+  +       
Sbjct: 485 ELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHEGVELELYDCEELV 544

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
                    +IL NL   A      G       +       F ++ +G      +    F
Sbjct: 545 METDRNRLTQILTNLLTNAIKHTQEGSIRFGYKRS-ALSVEFFVQDSGEGIPEDKIDTIF 603

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ V  +  S      +       L  +    +          V    L 
Sbjct: 604 SRFVQLDNWSK--GVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLP 651


>gi|294506872|ref|YP_003570930.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
 gi|294343200|emb|CBH23978.1| Signal transduction histidine kinase, membrane [Salinibacter ruber
           M8]
          Length = 668

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 57/231 (24%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSS 57
           M +       +  L + L   + H++ +PI  I    E++ E   E      +Q+     
Sbjct: 420 MLRAKQEAEQAARLKSTLIHNMSHELRTPITTITGYAEVIMEEAEEPHRSFALQIRESGR 479

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +      + +A   +G+++  +       +             DK +       +  +
Sbjct: 480 RLSDTLQSVLDMAQIESGTLEVTVQEVSVPGVVRDVVDRHAQAIEDKALTAELDVPEDCV 539

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFPEKFTQIV 168
                 +L  +      +  +  +        +         ++  G       +     
Sbjct: 540 VATDRALLYRILNNLVQNAVKFTEKGRCQVRVEPVAFGVRIHVRDTGVGIDPAFRPHLFE 599

Query: 169 DG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   V    +   +       L       +  +         +  L 
Sbjct: 600 PFKQESEGVAREYEGIGLGLALTKRLVDLLGGAIEVDSAKGEGSAFTVELP 650


>gi|262382344|ref|ZP_06075481.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295222|gb|EEY83153.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 637

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 60/230 (26%), Gaps = 19/230 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  L +   + + H+I +P+ AI    ++L +    +   +   +   + 
Sbjct: 403 LKQAKDKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEEDRETRQEFADIIQNNN 462

Query: 61  IIRLK-------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            +  +                        + +L+       ++     V+  +       
Sbjct: 463 ELLQRLIADVLDLSKIESNSMPLIYKDQDIPTLMKEIYSMILLRMHEGVELELYDCEELV 522

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
                    +IL NL   A      G       +       F ++ +G      +    F
Sbjct: 523 METDRNRLTQILTNLLTNAIKHTQEGSIRFGYKRS-ALSVEFFVQDSGEGIPEDKIDTIF 581

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ V  +  S      +       L  +    +          V    L 
Sbjct: 582 SRFVQLDNWSK--GVGLGLAICQGLVEQMGGNIRVTSRVGEGSVFYVTLP 629


>gi|229113327|ref|ZP_04242787.1| hypothetical protein bcere0018_55070 [Bacillus cereus Rock1-15]
 gi|228670125|gb|EEL25508.1| hypothetical protein bcere0018_55070 [Bacillus cereus Rock1-15]
          Length = 801

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 17/225 (7%), Positives = 56/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  +   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 795


>gi|30021212|ref|NP_832843.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|229128436|ref|ZP_04257416.1| hypothetical protein bcere0015_28820 [Bacillus cereus BDRD-Cer4]
 gi|296503641|ref|YP_003665341.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|6686907|emb|CAB64771.1| kin1 [Bacillus cereus ATCC 14579]
 gi|6759471|emb|CAB69799.1| putative sensory transduction histidine kinase [Bacillus cereus
           ATCC 14579]
 gi|29896766|gb|AAP10044.1| Sporulation kinase [Bacillus cereus ATCC 14579]
 gi|228655019|gb|EEL10877.1| hypothetical protein bcere0015_28820 [Bacillus cereus BDRD-Cer4]
 gi|296324693|gb|ADH07621.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 801

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 17/225 (7%), Positives = 56/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  +   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 795


>gi|261250560|ref|ZP_05943135.1| osmolarity sensory histidine kinase EnvZ [Vibrio orientalis CIP
           102891]
 gi|260939129|gb|EEX95116.1| osmolarity sensory histidine kinase EnvZ [Vibrio orientalis CIP
           102891]
          Length = 435

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIIGDTEECNEIISQFMD 279

Query: 66  FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++     +   VD      D+      +    +        E I       + + NL  
Sbjct: 280 YLKPVNKDSFIPVDLNDIANDVASSEGGYEVQIETELHQPLKETIGSPIAIKRAVSNLVT 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +          ++ NG      +    F     G+     +   +
Sbjct: 340 NAIRYGNDWIKVSTGITADNKLVWVCIEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   ++        + +     
Sbjct: 400 GLAIVKRIVSQHNGSVIVNNRSGGGLKVQISFP 432


>gi|260893731|ref|YP_003239828.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
 gi|260865872|gb|ACX52978.1| integral membrane sensor signal transduction histidine kinase
           [Ammonifex degensii KC4]
          Length = 546

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 71/241 (29%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49
            +      ++ +L       + + + + H++ +P+ A+    E+L +         + E 
Sbjct: 300 ERTKELQKANEELARANQFKSEILANVSHELRTPLTAVLAYTEMLLDPTTGPLTPEQREC 359

Query: 50  MQ-LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVD 97
           ++ +   S    +     +++A    G  +      D+ +V+++                
Sbjct: 360 LENIADSSKELLLEITDLLQMARLEAGRKELFYEPFDMAEVVQEVFSLLGPLARKKRIKL 419

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKIN 154
              +       +    +   IL NL   A      GGKVT+      D+    +  +   
Sbjct: 420 CGPEERGEWWVLADRAKVKHILTNLVSNAIKFTSEGGKVTVKLSYGFDTTRYMLVKVTDT 479

Query: 155 GNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           G      E+                  +    V  L   +  R+  E I          L
Sbjct: 480 GVGIDPAEQEVIFEKFYRSKKHSQGTGLGLTLVRELVQLHGGRVWVESIPGQGSSFYFTL 539

Query: 214 E 214
            
Sbjct: 540 P 540


>gi|295399964|ref|ZP_06809944.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|312110788|ref|YP_003989104.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|294977743|gb|EFG53341.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|311215889|gb|ADP74493.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 418

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 82/223 (36%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57
           ++    +  M++V+ L + I H+I +P+  +   ++LL    +                +
Sbjct: 194 RSKLVKIEKMEVVSQLAASISHEIRNPLTVVKGFIQLLKTPSLPQNTKDRYIQIALDEIN 253

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLS 112
            +  I   ++  A   +  V+ L+   ++++V++    +     +        G  +   
Sbjct: 254 RAEAIINDYLTFAKPTSDKVECLMVNEELQKVVQMLAPMAHMNSIEIVKKLEPGAIVGNI 313

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG +TIS +   N  I ++K  G      E+  +  +   
Sbjct: 314 QYFQQCFLNLLKNSIEAMPNGGTLTISSRLHGNHVIITIKDTGVGM-TAEQVNRFGEPYF 372

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     +      + +L  E   +    L+    K
Sbjct: 373 STKDKGTGLGTMVAVKTIQAMQGKLHIESEVNKGTTLTITFPK 415


>gi|229177175|ref|ZP_04304564.1| hypothetical protein bcere0005_5510 [Bacillus cereus 172560W]
 gi|228606356|gb|EEK63788.1| hypothetical protein bcere0005_5510 [Bacillus cereus 172560W]
          Length = 463

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFITRIAEKVNAMYKERYIKVSFSCPPTLVVNLDEQRFEQVII 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHRRIFITIEDEGEGIPPEDLPHIFDRFYRVDKARTRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 454


>gi|297583314|ref|YP_003699094.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297141771|gb|ADH98528.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 609

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 13/217 (5%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63
            +  L     L +   H+I +P+  I   L L+D    E   E   + L++  +      
Sbjct: 384 QAEKLAVVGELAAGAAHEIRNPLTVIDGFLSLMDQTLPEKDKERFQLPLLKKEAKRIDQI 443

Query: 64  LKFMRLAFGYTGS------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           ++ M L             V+ L+                     +     +    +  +
Sbjct: 444 IEDMLLMSKPGDPILEEASVNELMEEMVPLVEALPNYKDICFSIKTTDEPVLMDKEQMKQ 503

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           ++ NLF  A  ++   G++ ++    +      +  +G          ++ D    S   
Sbjct: 504 VVHNLFRNAVDAMDGSGEIRVTSAVEEGMVKVQIGDSGPGI-PEPLQAKLFDPFRTSKKG 562

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +   +                 
Sbjct: 563 GTGLGLTIAQRILQNHGGTIRLLPHKGTGACFELSWP 599


>gi|229060824|ref|ZP_04198179.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603]
 gi|228718471|gb|EEL70103.1| hypothetical protein bcere0026_29180 [Bacillus cereus AH603]
          Length = 448

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +A N      S+     +     S + H+  SP+ +I    + L             +++
Sbjct: 211 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 270

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105
           I   S       K +            L       Q        + ++   +K + V + 
Sbjct: 271 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFHLQKQIKDVIFMLEWKWREKDIAVEFD 330

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              I +  +     ++  N+F  +      GG V   V++ ++  + S+  NG      E
Sbjct: 331 VPNITIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEELESSIVISISDNGIGMEKEE 390

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +I D            ++   +    V  +   +   +           +   L K
Sbjct: 391 -MDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 448


>gi|197121029|ref|YP_002132980.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196170878|gb|ACG71851.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 516

 Score =  118 bits (295), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
           + +     L +  L A+  + ++I H+I +P+ AI  + ELL E                
Sbjct: 270 LDRQRAELLRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLV 329

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105
                         +                 L +I       +  +  A    V  +  
Sbjct: 330 SAISREVDRLNAVTEEYLRFARLPRPQLERHDLNEILGGLLDFLGPELAAARVAVHRALA 389

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160
                +  +  ++          +  ++P GG VT+  + + +      +    G     
Sbjct: 390 PGLPGVRCDEGQLRAVFLNLLRNSREAMPGGGTVTVVTRRADSGAAVEAELGDTGGGIPP 449

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I +    +      +   +   +  E+   +  E       + +    
Sbjct: 450 GDLT-RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTIFTLRFP 502


>gi|289551852|ref|YP_003472756.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659977|ref|ZP_07912835.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590]
 gi|289181383|gb|ADC88628.1| Two-component sensor kinase SA14-24 [Staphylococcus lugdunensis
           HKU09-01]
 gi|315494878|gb|EFU83215.1| sensor histidine kinase VicK [Staphylococcus lugdunensis M23590]
          Length = 607

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 66/220 (30%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +  + + + R  +   I  +  +     
Sbjct: 378 FVANVSHELRTPLTSMNSYIEALESGAWKDGALAPQFLSVTREETERMIRLVNDLLQLSK 437

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                D +        +  + I     +    T    ++  E            ++  N+
Sbjct: 438 MDNESDQINKEIVDFNMFINKIINRHEMSAKDTTFVREIPNETIFAEIDPDKMTQVFDNV 497

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFTQIVDGNV------ES 174
              A        +V   V+ +   N  +++   NG      +   +I D           
Sbjct: 498 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKV-EKIFDRFYRVDKARTR 556

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +   +  R+    ++     +   L 
Sbjct: 557 KMGGTGLGLAISKEIVEAHHGRIWANSVEGQGTSIFITLP 596


>gi|229060332|ref|ZP_04197698.1| hypothetical protein bcere0026_24320 [Bacillus cereus AH603]
 gi|228718922|gb|EEL70539.1| hypothetical protein bcere0026_24320 [Bacillus cereus AH603]
          Length = 439

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 208 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 267

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112
           R  ++           +               I  ++      +  +   ++    I  +
Sbjct: 268 RAQAIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNNINITKEFSEGTIIGNT 327

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 328 QHFHQCFLNLIKNSIEAMPCGGNLIISATVSNNKVIVRIQDSGVGM-SQEQINRFGEPYF 386

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    I +    L+    K
Sbjct: 387 STKTKGTGLGTMVAVKIIETMRGSLKIRSIVNKGTTLTITFPK 429


>gi|258510064|ref|YP_003183498.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257476790|gb|ACV57109.1| histidine kinase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 370

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 61/230 (26%), Gaps = 18/230 (7%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
           + +   L  ++ +     + + H++ +P+ +I   ++ L       G     + +I   S
Sbjct: 135 REMAEGLERIEQMRQEFVANVSHEMQTPLTSILGFVKALKSDGLSEGERRHYLDIIEAES 194

Query: 58  MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGE 107
                    +                       L ++    E                 E
Sbjct: 195 ERLSRLADNLLKLTSLESGHHPVTLTRFRLDRQLREVAIACEPLWTEKGLFLDMQVEPVE 254

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
                    ++ +NL   A      GG++ + ++  +     S+   G   R  +    F
Sbjct: 255 LEGDEDLLGQVWMNLLSNAIKFTEPGGRIQVRLEKEETGVCVSVADTGIGIRPEDVSRVF 314

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T+    +       + +       +   ++  +  E            L 
Sbjct: 315 TRFFKADRSRGKPGNGLGLAIAKRIVEMHRGDISVESEPGRGSTFKVHLP 364


>gi|188993224|ref|YP_001905234.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167734984|emb|CAP53196.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. campestris]
          Length = 702

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 306 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKGLSVI 365

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                    +      LG  E V E    V +   
Sbjct: 366 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHV 425

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++  NL   A    P  G++ ++V+      I S++ +G+     
Sbjct: 426 PPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIASE 485

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  D           +    V  L   +  ++             +  L 
Sbjct: 486 FLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 544


>gi|302342500|ref|YP_003807029.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639113|gb|ADK84435.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 591

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---------MSAIIRLKFMR 68
             + + H++ +P+ AI  S E L    +E++      +                 L    
Sbjct: 372 FVANVSHELRTPLTAIRGSSETLLGGALENQHYAKHFVEMIARNASRLERLTQDLLDLAA 431

Query: 69  LAFGYTGSVDSLIG-----LGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRERAKILL 120
           +  G    V   I         +  V E        ++          +   R   + +L
Sbjct: 432 MESGREELVKEAIDGASLADSVLATVGELAEERGVELERELPKESLRIMASRRHLEQAVL 491

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175
           NL   A      GGKVT+++ +++ +   S+K +G           F +      +    
Sbjct: 492 NLLDNAIKYTESGGKVTLALTEAEGQTRISVKDSGAGIAPEHLGRIFERFYRADKDRSRQ 551

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    V  +A ++  R+  E         + +L 
Sbjct: 552 MGGTGLGLAIVKHIAQKHGGRVEVESTPGQGSTFTLVLP 590


>gi|281354822|ref|ZP_06241316.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
 gi|281317702|gb|EFB01722.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
           BAA-548]
          Length = 1137

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 73/249 (29%), Gaps = 36/249 (14%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEV 49
           +A+       +++         +   + + H++ +P+ A+    ELL     E   + E 
Sbjct: 738 LAEQQEKLQQALEQARAADRAKSYFLATVSHELRTPLNAVIGFSELLQGADVEPQEQQEY 797

Query: 50  MQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---- 97
           +  I  +  + +  +                    VD    + +I  V +          
Sbjct: 798 LGSINFAGNALLNLINDVLDLSRLEADQVELDCRPVDVKRLVREIVGVFKQKAVEKNLSL 857

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLK 152
           +    +             +ILLNL   A      GG    +V        +   IFS+ 
Sbjct: 858 QMTYTNLPPTLYLDDLRIKQILLNLTGNALKFTHDGGVTVSAVFRLAEEAGQGTLIFSIT 917

Query: 153 INGNLARFPEKFTQIVDGNV-------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
             G     PEK +QI +  V           +   +       L  +   +L  E     
Sbjct: 918 DTGIGI-LPEKISQIFEPFVQDSGVRGHRIYEGSGLGLAISKRLVEKMGGKLSAESTPGK 976

Query: 206 NVVLSALLE 214
               +  LE
Sbjct: 977 GSTFTVRLE 985


>gi|148654494|ref|YP_001274699.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
 gi|148566604|gb|ABQ88749.1| response regulator receiver sensor signal transduction histidine
           kinase [Roseiflexus sp. RS-1]
          Length = 407

 Score =  118 bits (295), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 65/246 (26%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           +       + S  L AL  + + + H++ +P+  I  + ELL      ++     ++++ 
Sbjct: 152 LRTMQAQLVQSSKLAALGEIVAGVAHELNNPLAIILGNAELLSPQHDPEDQRSVAQIIES 211

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEK 108
            + +         F R              +  +  +    +       + V  S     
Sbjct: 212 AKRARRVVQSLATFARRGPMAKEWTSPTDLIERVLDLKRAALRSSGIALEVVCSSDLPMI 271

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------------------KNENIFS 150
                +  ++LLNL   A  +L       + +                          F 
Sbjct: 272 WVDIPQMQQVLLNLLHNAEYALAGMPAPQVWLTVVRGHAEKPPLPPAQAASAGGAFVCFD 331

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +  NG          ++    V +        +       +   +  ++L          
Sbjct: 332 VADNGPGI-PDHVIERLFQPFVTTRPPGRGSGLGLAIAYGIVTGHGGQILINTQAAQGTA 390

Query: 209 LSALLE 214
           +   L 
Sbjct: 391 VRVALP 396


>gi|301310170|ref|ZP_07216109.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831744|gb|EFK62375.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 632

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 20/228 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +     L  +    L  + + H+I +P+ AI    +LL   D+     E +++I  ++
Sbjct: 389 LKRERAEELDRLKSAFL--ANMSHEIRTPLNAIVGFSQLLAETDDPEERHEFVEIIDSNN 446

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             M L F      + +  +    ++           Q S   
Sbjct: 447 RMLLQLISDILDLAKIESGTMDLKFADMNVKEVINEIVTSFRIKMPDNVALIAPQDSPEC 506

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         +++ N    A       G +T++ +   +E  FS+   G+     E    
Sbjct: 507 QIYSDRMRLTQVISNFLNNAIKYTS-EGCITLAYEIIGDEIKFSVTDTGDGM-SQEIQAH 564

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I D      +      +       + +    R+               
Sbjct: 565 IFDRFYKGNTFKQGTGLGLSICETIVNRLGGRIGVNSELGKGSTFWFT 612


>gi|194017200|ref|ZP_03055812.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
 gi|194011068|gb|EDW20638.1| alkaline phosphatase synthesis sensor protein PhoR [Bacillus
           pumilus ATCC 7061]
          Length = 580

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 68/228 (29%), Gaps = 24/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFM 67
               +     + + H++ +PI +I    E L +  I+D+    + + +    ++     +
Sbjct: 352 QLEQMRKDFVANVSHELKTPITSIKGFSETLLDGAIDDKEALTEFLSIILKESVRLETLI 411

Query: 68  RLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +     +        L                 + +       ++ V    E + +  + 
Sbjct: 412 QDLLDLSKIEQQQFKLNIQEANATEIIQEIQVLLKQKATEKGIQLHVRVPKEPVYVMADP 471

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +I LNL   A    P GG VTIS +  K    F +   G   +  E   +I +   
Sbjct: 472 LRLKQIFLNLVNNALTYTPEGGSVTISARPRKGAYEFDVADTGIGMKKSEIP-RIFERFY 530

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +    V  L   ++  +            +  L+
Sbjct: 531 RIDKDRSRNSGGTGLGLAIVKHLVEAHEGTISVRSKQGKGTTFTVSLK 578


>gi|256838871|ref|ZP_05544381.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739790|gb|EEU53114.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 882

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 56/229 (24%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       S  L +   + + H+I +P+ AI     LL      ++  + I + + + 
Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +               +    ++          V+     
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++++ N    A     +G  +    +       F +K  G      +    
Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRRRDDE-LYFYVKDTGCGIAKDKIGQV 692

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S +    +      ++       +  E            L 
Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741


>gi|229112871|ref|ZP_04242402.1| hypothetical protein bcere0018_51080 [Bacillus cereus Rock1-15]
 gi|228670550|gb|EEL25863.1| hypothetical protein bcere0018_51080 [Bacillus cereus Rock1-15]
          Length = 672

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFYLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|150010061|ref|YP_001304804.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938485|gb|ABR45182.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 882

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 56/229 (24%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       S  L +   + + H+I +P+ AI     LL      ++  + I + + + 
Sbjct: 514 LRKAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSGLLAVTENMEDKEEYINIINSNN 573

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +               +    ++          V+     
Sbjct: 574 DLLLQLINDILDLAKIEAGTLEFVDSDVDVNQLFSDIEQSSRLKAQDGVQVCFVEKIPNC 633

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    ++++ N    A     +G  +    +       F +K  G      +    
Sbjct: 634 ILRTDRNRVSQVITNFINNAIKFTTQGSILFGYRRRDDE-LYFYVKDTGCGIAKDKIGQV 692

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S +    +      ++       +  E            L 
Sbjct: 693 FTRFVKLNSFVQGTGLGLSICQMIIKRLGGDIGVESEQGKGSTFWFTLP 741


>gi|94269400|ref|ZP_01291450.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451231|gb|EAT02132.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 539

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H++ +P+ AI    ELL E  +  E  +  R    +A
Sbjct: 183 LRQANARLEESSRLKSEFLANMSHELRTPMNAITGFAELLAETPLNQEQDEYCRTIRQAA 242

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS------W 104
                     + LA    G +D            +  + +    A  K ++++       
Sbjct: 243 AALLNLINDILDLAKIEAGKLDLETVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGL 302

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160
                  S    ++L+NL   A     +GG             K    F+++ +G     
Sbjct: 303 PDTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISP 362

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        DG+         +       L      ++            S  +E
Sbjct: 363 HRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEIE 421


>gi|42523042|ref|NP_968422.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39575247|emb|CAE79415.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 588

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 67/236 (28%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +      +  L     + + H++ +P+  I    ++L +     E  ++   +    
Sbjct: 188 RQRLYEQAQTANRLKDEFLATVSHELRTPLNVILGHSDILKDPATSPEEAKVSINAIHRN 247

Query: 61  IIRLKFMRLA------------FGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGE 107
                 +                 +   +D    +    E V     + + +V+V     
Sbjct: 248 AQIQVQIINDLLDVSRIISGKLQLHVKPIDIESVVEAAYESVQIAAKSKNIKVRVEGPER 307

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L NL   A    P+GG +T+ + + ++     +  NG         
Sbjct: 308 LKSVGGDPERLQQVLWNLLSNAIKFTPKGGNITVKLSNVESRVQIDVIDNGKGIDPEFLP 367

Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             F +    +           +    V  +   +   +       +     +  L 
Sbjct: 368 YVFERFRQEDATTTRRYGGLGLGLAIVRHIVEGHGGTVAATSAGPNQGAKFTVSLP 423


>gi|304404947|ref|ZP_07386607.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304345826|gb|EFM11660.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 457

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 70/223 (31%), Gaps = 19/223 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRL 64
            +  L  L  + + I H+I +P+ +I   ++LL    ++   DE  ++I      A   +
Sbjct: 233 QNDKLAMLGKIAAAIAHEIRNPLTSIRGFIQLLRPHLLQLGKDEYARIIVAEIDRANDII 292

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEK---IDLSRERA 116
                +   T  +   + +  + + +              +Q+    E        ++  
Sbjct: 293 YEFLNSSKPTAPMKQEVSINALLKEVILLTESEALMRGCLIQLEAYEETLLVSIDVKQVK 352

Query: 117 KILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +++LN+   +  ++              VQ S      +L+ NG          ++ D  
Sbjct: 353 QVILNIMKNSLDAIEEINGSRNGRIDVIVQRSPEGVEITLRDNGKGMDRSTLS-RLFDPF 411

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +   +  + + D        L 
Sbjct: 412 FTTKEAGTGLGLSVSYRIIRNHGGTIRVDSVPDEGTSFMINLP 454


>gi|229009818|ref|ZP_04167038.1| hypothetical protein bmyco0001_2880 [Bacillus mycoides DSM 2048]
 gi|228751436|gb|EEM01242.1| hypothetical protein bmyco0001_2880 [Bacillus mycoides DSM 2048]
          Length = 672

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +  +L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEEHTYEKHNKYFKLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +     + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTKKSDLQMLDLNSIIHDSIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGQNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIATRHNAKIEIQ-TGSEGTTF 661


>gi|229917478|ref|YP_002886124.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
 gi|229468907|gb|ACQ70679.1| PAS/PAC sensor signal transduction histidine kinase
           [Exiguobacterium sp. AT1b]
          Length = 613

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 58/218 (26%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  + + LE+L      +  +    ++  +  +   I  +  +     
Sbjct: 387 FVANVSHELRTPLTTMRSYLEVLAEGAYQDEELAPRFLETTQNETERMIRLVNDLLQLSK 446

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLN 121
                     V         + +    +     +Q      K  +          +++ N
Sbjct: 447 MDSKEYKMQKVKFDFVQFFNDIIDRHEMTKGDAIQFRRKLMKRRVYVHADQDKMTQVIDN 506

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTI 176
           +   A    P GG +T          +  +K  G         + F +    +      I
Sbjct: 507 IITNAIKFSPEGGTITFRTMLRAKRLVIGIKDEGVGIPKSNLKKIFERFYRVDKARARNI 566

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E        +   + 
Sbjct: 567 GGTGLGLSIAKEVVSAHGGDIWAESEFGRGTTIYFTIP 604


>gi|324326022|gb|ADY21282.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 356

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKREHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVCIP 352


>gi|228945600|ref|ZP_04107950.1| hypothetical protein bthur0007_17600 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814118|gb|EEM60389.1| hypothetical protein bthur0007_17600 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 293

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 59  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + I  +K +++    EK+
Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPIWAEKEIELDLDLEKV 175

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++ +G      +    
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 235

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 236 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|229172680|ref|ZP_04300238.1| hypothetical protein bcere0006_17910 [Bacillus cereus MM3]
 gi|228610812|gb|EEK68076.1| hypothetical protein bcere0006_17910 [Bacillus cereus MM3]
          Length = 351

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQTVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 HIIADQESMSQVWINLIHNSIKFTPIGGTITIQLKEYEKVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADTSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGDGTEFIVCIP 346


>gi|75908456|ref|YP_322752.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
 gi|75702181|gb|ABA21857.1| adenylate/guanylate cyclase [Anabaena variabilis ATCC 29413]
          Length = 1156

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----------LLDEVGIEDEVMQ 51
            +     L            I H+  +PI  I   LE                      +
Sbjct: 502 REQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLESAVGTGEGLSYAQSAIALRNSRR 561

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108
           L+RL +    ++              D +  +  I +    +          ++      
Sbjct: 562 LLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTELDECPTV 621

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                +  K++ NL   A    P GG +++ +Q   +  I  ++  G      +      
Sbjct: 622 YIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVKEQIPHLFE 681

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +  +G+   + +   +    V  L   +  R+  E +       +  L
Sbjct: 682 RFRQAEGSENRSYEGSGLGLALVKELVELHGGRVTVESVYGKGTTFTLWL 731


>gi|42781730|ref|NP_978977.1| sporulation kinase B [Bacillus cereus ATCC 10987]
 gi|42737653|gb|AAS41585.1| sporulation kinase B [Bacillus cereus ATCC 10987]
          Length = 422

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 73/223 (32%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  I+  + +L 
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTSNLTPESRDKYIDHXLEELN 251

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           R   +                           I  ++         +   ++   I  ++
Sbjct: 252 RAQEIIDDYLTFAKPAPEKLDHISVEQELNRVINMIVPLCNMNTVHITKDFSNATIVGNK 311

Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  +    NL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGNLKIRSVMNKGTTLTITFPK 413


>gi|17232455|ref|NP_489003.1| adenylate cyclase [Nostoc sp. PCC 7120]
 gi|17134101|dbj|BAB76662.1| adenylate cyclase carring two-component hybrid sensor and regulator
           domains [Nostoc sp. PCC 7120]
          Length = 1155

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----------LLDEVGIEDEVMQ 51
            +     L            I H+  +PI  I   LE                      +
Sbjct: 502 REQAERLLQLDKQKTEFFQNISHEFRTPITLIQGPLESAVGTGEGLSYAQSAIALRNSRR 561

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108
           L+RL +    ++              D +  +  I +    +          ++      
Sbjct: 562 LLRLVNQLLDLQRLDAGRMQPSFRPCDLVDFVSQIVESFRPYCEKKALHLTTELDECPTV 621

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                +  K++ NL   A    P GG +++ +Q   +  I  ++  G      +      
Sbjct: 622 YIDMEKFDKVVYNLLSNAMKFTPEGGTISVKLQSQGHHCILQVQDTGIGIVKEQIPHLFE 681

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +  +G+   + +   +    V  L   +  R+  E +       +  L
Sbjct: 682 RFRQAEGSENRSYEGSGLGLALVKELVELHGGRVTVESVYGKGTTFTLWL 731


>gi|317152082|ref|YP_004120130.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942333|gb|ADU61384.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 643

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 61/252 (24%), Gaps = 42/252 (16%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------- 48
           +     L  + ++ +   S + H++ +P+ +I    +LL +    +              
Sbjct: 391 EEANQRLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLHKEFTRNYLPLAQNEPLLVKK 450

Query: 49  ------VMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
                  + +I          +                    ++    +    Q +    
Sbjct: 451 GQRIQNNLLIISHEGERLTRLINDVLDLNKIESGSMGWRDERLNMSDIVETAVQSVTGLF 510

Query: 95  AVDKRVQVSWTGEK-----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           + + +V +    +      I       ++L+NL   A      G     +          
Sbjct: 511 SQNPQVGLVSEIDPALPVVIADPDRMQQVLINLLNNAAKFTDDGSVTVRAFPRFGQ-VRV 569

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI-------DSHDIQFYYVILLAHENKIRLLPEII 202
            +   G     PE   +I +   ++             +       +      R+  E  
Sbjct: 570 EIADTGVGIH-PEDQNRIFEKFHQTKTATMGDKPKGTGLGLTICREIVEHYSGRIWVESE 628

Query: 203 DDHNVVLSALLE 214
                     L 
Sbjct: 629 PGKGSTFIFTLP 640


>gi|260173264|ref|ZP_05759676.1| two-component sensor histidine kinase [Bacteroides sp. D2]
 gi|315921537|ref|ZP_07917777.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695412|gb|EFS32247.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 406

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 61/220 (27%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI    +L+        +++  ++I  +S   +     
Sbjct: 184 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 243

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      ++        +D  + L                  V             
Sbjct: 244 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFCHKTQNGVKLILDDVDADMYTSGDWNRI 303

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +I+ NL   A    P+G  +    ++ ++   F +K +G         T          
Sbjct: 304 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVND 362

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +L  +   R+     +         L 
Sbjct: 363 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 402


>gi|224371381|ref|YP_002605545.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223694098|gb|ACN17381.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 967

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 60/238 (25%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +    +   + + H+I +P+  +    ELL E  + +E  +  +    S 
Sbjct: 291 LEKAKETAEEASRAKSQFLANMSHEIRTPMNGVLGMAELLMETDLTEEQRRFSKTIQSSG 350

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSW 104
                     +  +    G ++      +++ +I+D + +               +    
Sbjct: 351 SSLLAIINDILDFSKIEAGKLELETINFNLQILIDDVMQMLASRAHAKQLELAVLIPPET 410

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
                       ++L NL   A     +        T     ++ +    ++  G     
Sbjct: 411 CIFLRGDPTRFRQVLTNLVGNAIKFTKQGEVVVQVATTVSDQNRVKLHVLIRDTGIGISQ 470

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +   ++                   +       +       L  E         S  
Sbjct: 471 QDL-QRLFSPFSQADGSTTRKYGGTGLGLAISKEIVALMGGDLHCESEPGKGSTFSFT 527


>gi|21228280|ref|NP_634202.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20906740|gb|AAM31874.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 813

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 72/246 (29%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEV---GIEDEVM 50
            K     +    +VA   +R        + H++ +P+ A+    +LL       + ++  
Sbjct: 536 RKQAEERMLQAKMVAEAANRAKTTFIVNMSHELRTPLNAVIGFSDLLLSETVGPLNEKQK 595

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     S S    L  +      +      I L      +   I   +RV    + +K  
Sbjct: 596 RYTENISKSGNHLLDVINDVLDISKLELGNIELYYETVDVAGIIEEVQRVLSPLSADKNI 655

Query: 111 LSRERA---------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           +                    +IL N+   A       GKV I  +  ++    S++  G
Sbjct: 656 IIESYIEKDLKTVIADRVKLKQILYNILNNAIKFSSENGKVNIYAEPREDMIEISVEDEG 715

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              +  + + ++          +        +    V      +  ++  +       + 
Sbjct: 716 IGIQESD-YEKVFQPFVQIDESISRKHGGVGLGLALVKRFVELHGGKVWVKASPGGGSIF 774

Query: 210 SALLEK 215
           +  + K
Sbjct: 775 TFRIPK 780


>gi|319956297|ref|YP_004167560.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
 gi|319418701|gb|ADV45811.1| histidine kinase [Nitratifractor salsuginis DSM 16511]
          Length = 822

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K     L +     L  + + H+I +P+  I   ++LL+   + +E  + IR+   S+  
Sbjct: 307 KERRSALDTARAKDLFLANMSHEIRTPLNGIVGFIQLLETTPLNEEQREFIRVVQESSQN 366

Query: 63  R----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQVSWTG 106
                   +  +    G V+      D     E              I     V  +  G
Sbjct: 367 LLNIVNDILDFSKIEAGKVELEEIPFDPIDKWEMAVETYAAKALHKGIDFAVYVDPALPG 426

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFP 161
             +      +++L+NL   A     RGG+V++  Q            F +   G      
Sbjct: 427 RILGDPTRISQVLVNLVNNAIKFTERGGEVSVFCQKMGELEGNVFVKFVVSDTGIGIAL- 485

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++  +I D                 +       L      +L  E            L 
Sbjct: 486 DQQEKIFDLFTQADSTTSRKFGGTGLGLSISSKLVAAMGGKLAVESEPGKGSSFFFTLP 544


>gi|305680514|ref|ZP_07403322.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305660045|gb|EFM49544.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 491

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 20/209 (9%), Positives = 60/209 (28%), Gaps = 16/209 (7%)

Query: 23  CHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            H++ +P+ ++    EL            + ++   ++  +++    + L        D 
Sbjct: 280 SHELRTPLTSVKGYAELYRSGATTDATMVMKKIEEEAARMSLLVEDLLSLTRSEEARFDE 339

Query: 80  LIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
                    +             +++   + +     +  +    ++L NL + +     
Sbjct: 340 APVDMLALGLSVVGSLRAAYPERSIEVDAKATDMPMVMGDTARLHQVLTNLIVNSLKHGG 399

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTIDSHDIQFYYV 186
              K  +S+    N  I  +  +G   +    P  F +    +           +    V
Sbjct: 400 EEAKARLSIDTDDNHVILEVSDDGVGVQEADLPHIFERFYRADTSRTRATGGSGLGLAIV 459

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +   ++  +  E           +L K
Sbjct: 460 KTIVEAHQGAISVESTVGEGTSFRIVLPK 488


>gi|225022168|ref|ZP_03711360.1| hypothetical protein CORMATOL_02202 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224945101|gb|EEG26310.1| hypothetical protein CORMATOL_02202 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 491

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 20/209 (9%), Positives = 60/209 (28%), Gaps = 16/209 (7%)

Query: 23  CHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            H++ +P+ ++    EL            + ++   ++  +++    + L        D 
Sbjct: 280 SHELRTPLTSVKGYAELYRSGATTDATMVMKKIEEEAARMSLLVEDLLSLTRSEEARFDE 339

Query: 80  LIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
                    +             +++   + +     +  +    ++L NL + +     
Sbjct: 340 APVDMLALGLSVVGSLRAAYPERSIEVDAKATDMPMVMGDTARLHQVLTNLIVNSLKHGG 399

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTIDSHDIQFYYV 186
              K  +S+    N  I  +  +G   +    P  F +    +           +    V
Sbjct: 400 EEAKARLSIDTDDNHVILEVSDDGVGVQEADLPHIFERFYRADTSRTRATGGSGLGLAIV 459

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +   ++  +  E           +L K
Sbjct: 460 KTIVEAHQGAISVESTVGEGTSFRIVLPK 488


>gi|197120728|ref|YP_002132679.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196170577|gb|ACG71550.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 707

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 63/230 (27%), Gaps = 26/230 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             M+ V LL   I HD  + +  I    ELL             + Q  R  +      L
Sbjct: 338 QKMEAVGLLAGGIAHDFNNLLTGILGYAELLGEAGTAADEAAAGIRQAARRGAALTRQLL 397

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            F R        V+    + ++  ++E  +     ++         +  +  ++   +  
Sbjct: 398 GFARRGKYQQVPVNVHALVREVSALLERTLDKRIAIRHRLAAGSAVVRGDPDQLQQVVLN 457

Query: 125 ---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPEKFTQ 166
               A  ++P GG +T  V +                       +   G          +
Sbjct: 458 LAVNARDAMPSGGTLTFEVAEVELDAEGTRARPGLAPGPHVAVMVADTGVGIPAV-VRDR 516

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +        +    V  +   +   +  E  +      + LL 
Sbjct: 517 VFDPFFTTKPAGQGTGMGLAMVYGIVQNHGGWVGFESEEGKGARFTVLLP 566


>gi|78355367|ref|YP_386816.1| periplasmic sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78217772|gb|ABB37121.1| periplasmic sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 576

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 76/227 (33%), Gaps = 21/227 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------------VGIEDEVMQLI 53
            +  L ++  L + + H+I +P+  I+    L+++                +   V+Q +
Sbjct: 342 HAHKLSSIGRLAAGVAHEINNPLAIINEKAGLMNDLMEHGNDEIIRAKFPELVASVLQSV 401

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112
                     L F R        +D    + ++   + ++ +  +  ++++   +   +S
Sbjct: 402 SRCRTITHRLLGFARRMEVQVEPLDVNEIVREVLGFLEKESLYRNISLELNLDDDLPRIS 461

Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIV 168
            +R    ++ LN+   A A++  GG+V I+ +    +     +  NG             
Sbjct: 462 SDRGQLQQVFLNIINNAIAAVDNGGRVQITTRSVDLDTVAVLITDNGVGMSDEVLSHIFE 521

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +   +       +  +   R+     +      +  L K
Sbjct: 522 PFFTTKGAEGTGLGLAITYGIVQKLGGRIAVASEEGKGSTFTIELPK 568


>gi|134298576|ref|YP_001112072.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134051276|gb|ABO49247.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 453

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 77/225 (34%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I+  +E L +  IE        +++I          +  
Sbjct: 227 ERMRTEFVANVSHELRTPLTSINGFVETLLDGAIEEPIIARNFLEIISAEGKRLANIIDD 286

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRER-- 115
           +        R        VD    +G+   + E   +  + ++    + +   +  ++  
Sbjct: 287 LLKLSRLEDRRTKLNKQPVDLAEVIGNTITMFEGRALEKNIQITTEISPKLPLVPGDQGF 346

Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171
            +++++NL   A      GG V ISV+ +++E   ++   G        P  F +    +
Sbjct: 347 LSQVMINLVDNAIKYTLTGGTVHISVKFNEHEVTVTVSDTGIGIPIESIPRVFERFYRVD 406

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +       +   +  ++  E  D      S  L 
Sbjct: 407 KARSREMGGTGLGLSICKHIMEAHGGKIRVES-DSSGSQFSFSLP 450


>gi|332702637|ref|ZP_08422725.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552786|gb|EGJ49830.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 616

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       +  L A+    + + H+I +P+ AI     ++ E   + E ++    +  
Sbjct: 370 LRRLEQEVKRNERLAAIGSFSAAMAHEIRNPLTAIKTYTGMVWEKSSQPEFLESFDRNVS 429

Query: 59  --------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109
                        L+  R    +   +D    L D   +  ED  +    +         
Sbjct: 430 AGIGRIEGIVNDLLQLSRPPKLHLEPLDIGEVLDDALALLGEDLESARVTLSFDREACGH 489

Query: 110 DLSRERAKILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKING 155
            ++ +R ++   LF +   ++                      S   ++   + S+   G
Sbjct: 490 VITGDREQLYRALFNIMLNAIQAMKGAGGGGRLEISAHPNQIRSKTGAREAIMLSIADTG 549

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                    +       +  E+   L          V S +L 
Sbjct: 550 PGIPPEILDEIFNPYFTTKGQRGTGLGLAITHKIIAEHGGSLGAANRQGGGAVFSVVLP 608


>gi|330447152|ref|ZP_08310802.1| osmolarity sensor protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491343|dbj|GAA05299.1| osmolarity sensor protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 444

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 8/213 (3%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKF 66
              +  ALL + + HD+ +P+  I  + E++        E  +      +++ +      
Sbjct: 226 QLEEDRALLMAGVSHDLRTPLTRIRLATEMMSPEDSYLAESMITDTEECNAIISQFMDYL 285

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
                     +D    L D+      +    ++      G     +    + + NL + A
Sbjct: 286 KSTKKQEEEELDLNTLLLDVAHTEGGYSKTIEQQLGEIPGTVSANAVALKRAVANLVVNA 345

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDI 181
                   K++      +    F ++ +G      +                S  +   +
Sbjct: 346 QRYGNGWVKISSGASVDRKSAWFCVEDDGPGIAPDQVTKMFQPLTRGDSARGSEAEGTGL 405

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +L     +  + +   L 
Sbjct: 406 GLAIVKRIVDQHDGVILVRNRSEGGLRVEVTLP 438


>gi|229096501|ref|ZP_04227472.1| hypothetical protein bcere0020_17480 [Bacillus cereus Rock3-29]
 gi|229115475|ref|ZP_04244881.1| hypothetical protein bcere0017_17680 [Bacillus cereus Rock1-3]
 gi|228667888|gb|EEL23324.1| hypothetical protein bcere0017_17680 [Bacillus cereus Rock1-3]
 gi|228686707|gb|EEL40614.1| hypothetical protein bcere0020_17480 [Bacillus cereus Rock3-29]
          Length = 351

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ +      +  +G      +    
Sbjct: 234 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +           +    V  +   ++  +  E  + +       + K
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHEGEIKVESEEGNGTEFIVCIPK 347


>gi|206978378|ref|ZP_03239250.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|206743412|gb|EDZ54847.1| sensor histidine kinase [Bacillus cereus H3081.97]
          Length = 463

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 60/219 (27%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E     + ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSSKQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +                  + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKSISIAIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|52142853|ref|YP_083976.1| sporulation kinase B [Bacillus cereus E33L]
 gi|51976322|gb|AAU17872.1| sporulation kinase B [Bacillus cereus E33L]
          Length = 422

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++    +  M++V+ L + I H++ +P+  +    +LL                +++ + 
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112
            +       L F + A      +     L  +  +I     ++         T   +   
Sbjct: 252 RAQEIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLIKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTTLTITFPK 413


>gi|228914577|ref|ZP_04078186.1| hypothetical protein bthur0012_18070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844896|gb|EEM89938.1| hypothetical protein bthur0012_18070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 293

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 59  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G+     +    
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 235

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 236 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|189465571|ref|ZP_03014356.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
 gi|189437845|gb|EDV06830.1| hypothetical protein BACINT_01929 [Bacteroides intestinalis DSM
           17393]
          Length = 1039

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     +L     E E  + + +   + 
Sbjct: 664 LTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEQEKQEYVSIIENNN 723

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSWT 105
            +        + L+    G+++      ++ +++ +                + V+ +  
Sbjct: 724 TLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKTDAVKLEFVEPAGP 783

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A     +G          +NE  F +   G      +K  
Sbjct: 784 CMVYTEKNRLSQLMINLVTNAIKFTEKGSIRFGYEMR-ENELYFYVADTGCGI-PKDKQQ 841

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I    V   S      +       L      R+  E  +         L 
Sbjct: 842 NIFGRFVKLNSFAQGTGLGLSICQTLIERMGGRIGVESEEGKGSTFWFTLP 892


>gi|94265011|ref|ZP_01288780.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454500|gb|EAT04785.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 581

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H++ +P+ AI    ELL E  +  E  +  R    +A
Sbjct: 183 LRQANARLEESSRLKSEFLANMSHELRTPMNAITGFAELLAETPLNQEQDEYCRTIRQAA 242

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLG------DIEQVIEDFIAVDKRVQVS------W 104
                     + LA    G +D            +  + +    A  K ++++       
Sbjct: 243 AALLNLINDILDLAKIEAGKLDLEAVPFSLDELLEGVRAMFTLAARKKGIEITIKRGEGL 302

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160
                  S    ++L+NL   A     +GG             K    F+++ +G     
Sbjct: 303 PDTLRGDSHRLRQVLINLLGNAIKFTEQGGVELEVAAGSTAADKVRLFFAVRDSGMGISP 362

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        DG+         +       L      ++            S  +E
Sbjct: 363 HRLEAIFEKFTQADGSTTRRFGGTGLGLAICRQLVELMGGQIEVSSQQGKGSTFSFEIE 421


>gi|315187209|gb|EFU20966.1| multi-sensor hybrid histidine kinase [Spirochaeta thermophila DSM
           6578]
          Length = 632

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 69/242 (28%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     L S  + A+  L   + HD  + +  +    +L+ +    D  ++       
Sbjct: 249 LRERERQLLQSQKMEAVGRLAGGVAHDFNNLLTVLMGYSKLILQGLPADSPLRSDVQEIQ 308

Query: 59  S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGE 107
                        L F R        VD    L ++E+++   +  D  +    ++ +  
Sbjct: 309 RATLRSSHLIRQLLLFSRHQVAQPEVVDLNELLREMERLLRRVLREDITLTLSCLAASPR 368

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLK 152
                 +  ++++NL + A  ++P GG +TI  ++                    +  + 
Sbjct: 369 VYVDPAQFEQVVVNLAVNARDAMPNGGMLTIQTRNEILREERKGALISVPPGEYVVLDVS 428

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G+                    +   +    V  +       +            S  
Sbjct: 429 DTGSGIPPAILPRIFEPFFTTREDEGTGLGLSTVYAVITGAGGFVDVSSTPGRGTTFSLY 488

Query: 213 LE 214
           L 
Sbjct: 489 LP 490


>gi|301312439|ref|ZP_07218355.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300829622|gb|EFK60276.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 1045

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA++      S  L +   + + H+I +P+ AI     +L      ++  +   +   + 
Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 728

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +   + Y      L  L     +      V    +     
Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788

Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A      G  +        N   F ++  G      ++  
Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLRDDNTLWFYVEDTGCGIPENKRKD 848

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +      ++  + K  +  + ++         L 
Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898


>gi|268316575|ref|YP_003290294.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
 gi|262334109|gb|ACY47906.1| multi-sensor signal transduction histidine kinase [Rhodothermus
            marinus DSM 4252]
          Length = 1029

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 60/235 (25%), Gaps = 25/235 (10%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
            AK      S +    L  + + H+I +P+  I    ELLDE     +   L   +     
Sbjct: 789  AKERAEEASRLKSAFL--ANMSHEIRTPLTGILGFAELLDEELETRQQEDLREFTHIIDR 846

Query: 58   ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSW 104
                   +    + L+      ++  +   D+  V    + + + +              
Sbjct: 847  SARRLLTLLNDILDLSKIEANRLELKLQPTDVVDVARQAVQLMQPLAEEKGLKLELHAEE 906

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                        ++L+NL   A      G       Q      + +++  G         
Sbjct: 907  NLTARADPNRLHQVLVNLLSNAIKFTDEGHVRVELGQKKG-WVLLAVEDTGCGISPEFLP 965

Query: 165  T-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +     +        +    V  L      ++  +           LL 
Sbjct: 966  HLFEPFRQEHEGLTQKHQGVGLGLAIVKRLIDLMSGQITVQSEVGRGTRFEILLP 1020


>gi|228967769|ref|ZP_04128785.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791923|gb|EEM39509.1| hypothetical protein bthur0004_45580 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 484

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +                 +  + ++ +S  G +I+     
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTISSDNNKVIVKVIDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|218442002|ref|YP_002380331.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
 gi|218174730|gb|ACK73463.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7424]
          Length = 1252

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 63/232 (27%), Gaps = 21/232 (9%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
            M +      S+ DL       + HD+  P+G I +  +LL            +  +  + 
Sbjct: 1018 MEQRQELARSNQDLE-QFAYIVSHDLQEPLGIISSYGQLLHRHCQKQLDPKAETYIDRML 1076

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
             S      +++ +           +L  +     + +    ++  ++      +I+    
Sbjct: 1077 NSVKRMRQQIEDLLQYSRIGTRKQTLQLIDSHSVLRQAIANLEIPIKKHNAQIEINSSLP 1136

Query: 111  ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFT 165
                   +  ++  NL   A         V       + +     ++ NG        + 
Sbjct: 1137 NLRVDPSQLRQLWQNLISNAIKYHQNIPPVIKINCQRQKDEWLFSIQDNGIGINPRY-YE 1195

Query: 166  QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +I         +       I       + H +  R+  E            +
Sbjct: 1196 RIFQVFQRLHTQEDYPGTGIGLAICQRIVHRHGGRIWVESELGQGSTFYFTI 1247


>gi|148266231|ref|YP_001232937.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146399731|gb|ABQ28364.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 359

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 25/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            ++        ++VA++     HD+ SP+  +   ++ L     +   + L         
Sbjct: 125 TEDKKEKRQREEIVAMMT----HDLKSPLTVLMGYVQTLKGEMPQKIDISLQPCLKEMDR 180

Query: 62  -------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTG 106
                  +    +       G +     + DI  +++                +  + + 
Sbjct: 181 SALKLLAMIEDVLDAYRLEVGLLQINCAVCDIGALLDGCCCDGLREAQARGSNLTCNISE 240

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               L  +  ++          A    PR G VT++ +  +++   S+K  G      + 
Sbjct: 241 GIPPLKVDGKQLSRVFANLIGNALKFTPRRGSVTVTAEVREDKVFVSVKDTGIGIPQKDV 300

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +      +       +   +   +  E ++      S ++ 
Sbjct: 301 PRIFNKYFRSSAATGFKGTGLGLTISKAIVEAHSGTIEVESVEGEGSCFSVIIP 354


>gi|300118890|ref|ZP_07056603.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298723735|gb|EFI64464.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 484

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKIMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEKSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTNIFFSLEK 478


>gi|301309818|ref|ZP_07215757.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300831392|gb|EFK62023.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 761

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 59/233 (25%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49
           A+        M    L  + + H+I +P+ AI     L++   + +              
Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++LI      + +    M   F        +  +    Q++       +       
Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++L N    A         +V        +     ++  G      EK 
Sbjct: 646 VIVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q+ D     +       +      ++A      +  +         +  L K
Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFTLTLPK 757


>gi|255526346|ref|ZP_05393260.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255509923|gb|EET86249.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 441

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
           K    +LS M     L     + I HD+ +P+  I ++L+L+              +  +
Sbjct: 168 KEDKLHLSKMKEIDKLRTDFFTNISHDLRTPLNIILSALQLMKSFNNLNCNEEKSFKYFK 227

Query: 52  LIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            I+ +S+  +  +  +                      I       V +        +  
Sbjct: 228 SIKQNSLRLLKLINNLIDITKIDSGYFEIRTGNYNIVNIVEDITLSVAQYVENKSITLTF 287

Query: 103 SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
               E+  ++ +  K+   +      A      GG + I++ D  +  +  ++  G    
Sbjct: 288 DTNTEEKFMACDPDKVERIMLNLISNAIKFTNPGGHIFINMFDEDDYIVICVEDTGIGIP 347

Query: 160 FPEK-----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +        +  +           I    V  L   +  ++               L 
Sbjct: 348 EEDLDIIFERFRQSNRASARNYTGSGIGLSLVKSLVEMHGGKISVRSTYGKGTKFVIKLP 407


>gi|239905956|ref|YP_002952695.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795820|dbj|BAH74809.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 560

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 59/231 (25%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIEDEV--------MQLIRL 55
            S  + AL  L + + H++ +P+  I      + +LL E  I+           +  I  
Sbjct: 328 QSSKMAALGKLAAGVAHEVNNPLAIIMEKAGWMRDLLSEEDIKASPNFQEFADAVAKIEF 387

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKID 110
               A      +             + +          +  +           +  +   
Sbjct: 388 HVRRAKDVTHRLLGFARRMEPTQENLDVNLLLEQTRSFLENEANFRGIAFVRDYQADLPH 447

Query: 111 LSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  + +++      +   ++    K     +         E   ++   GN     E   
Sbjct: 448 IESDASQLQQVFLNILDNAIDAIDKNGSITIATRKLPDTPEVEIAIADTGNGI-PRETLE 506

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +    +   +       +  +   R+     +         L 
Sbjct: 507 KIFDPFFTTKKVGEGTGLGLTISYSIIEKLGGRIQVASEEGKGTTFRITLP 557


>gi|224827111|ref|ZP_03700207.1| PAS/PAC sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
 gi|224600620|gb|EEG06807.1| PAS/PAC sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
          Length = 713

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 63/217 (29%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNS----LELLDE--------VGIEDEVMQLIRLSSMSAIIRLK 65
           + S I H++  P+ AI N     L +L++               ++    S         
Sbjct: 479 MASGIAHELNQPLAAISNYCAASLAMLEDVEEAPAQVTDALKAAIRQAERSGEIIKRLRA 538

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDLSRERAKILLN 121
           F+         VD  + +G+   + E  +  +    V          +  S +  ++L+N
Sbjct: 539 FVSKRSMDVRQVDLNLLVGNSLFLAEHDLRSNGVQVVQMLSANPVTVMADSIQIEQVLMN 598

Query: 122 LFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           L   A  ++    +    +    +      I  ++ +G     P+    +      +   
Sbjct: 599 LLSNAIEAMKGEREGARQLVIHSHVALSNAILEVRDSGRGI-SPDVQAVLFHPFYSTREG 657

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +  +    +  E I          L 
Sbjct: 658 GMGLGLSICQTIVEQYGGSIEAENIPGSGACFRLRLP 694


>gi|196232623|ref|ZP_03131475.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196223385|gb|EDY17903.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 364

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSS 57
            K    +L  +  + +   + + H++ +P+  I    E L +        +  + +    
Sbjct: 119 RKRFEQSLQEASRMKSEFLANMSHELRTPLNGIIGFAEFLVDGKPGTLNPKQKEYLGDIL 178

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111
            S    L+ +             + L  +  V+   I     V      +K         
Sbjct: 179 NSGKHLLQLINDVLDLAKVEAGKMDLTPVSFVLSQAIDEVCAVAKPLAQKKHIHVRLTVA 238

Query: 112 ---------SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFP 161
                     ++  ++L NL          GG V I       +    S+K  G   +  
Sbjct: 239 PELSCVTLDQQKFKQVLYNLLSNGIKFTDDGGNVGIFATPYDGSRFKLSVKDTGIGIKPE 298

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++               +   +       L       +  E         S +L 
Sbjct: 299 DI-QRLFREFEQLESGASRRYEGTGLGLALTRKLVELQGGAINVESEVGVGSTFSVVLP 356


>gi|218900588|ref|YP_002448999.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218541412|gb|ACK93806.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 672

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + ++   G     PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMNTGKVLTISTYKEGQNCVVLAVHDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|77461028|ref|YP_350535.1| two-component sensor kinase CbrA [Pseudomonas fluorescens Pf0-1]
 gi|77385031|gb|ABA76544.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 982

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E   +D        ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREDDGELTEISGQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V             
Sbjct: 803 RVSRIVQSLMSFAHAGSHQHSDEPVCLAEVAQDAIGLLALNRRNFEVQFYNLCDPDHWVE 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  +  ++     ++  G+         ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVKSEAGEHTVDLIVEDEGSGIPSS-IMDRLFE 921

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADVQSQRGTRIRVTLPR 973


>gi|239908782|ref|YP_002955524.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798649|dbj|BAH77638.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 968

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 61/240 (25%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++     S+    ++  + + H+I +P+  I   L+LL      DE  + +  +  S 
Sbjct: 576 LKQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTTDPNDEQKEYLLGAIRST 635

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
               + +      +      + + + E  I+                     + R     
Sbjct: 636 NRLTRLLSDILDISRIEAGKMQIVESEFDIKMIWDSISELFDMEARGKGLLLEFRWDNIL 695

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159
               +       +IL NL   A     +G             DS    + ++   G    
Sbjct: 696 PMLLVGDEARLRQILFNLVGNAIKFTEKGKIRIDASLLPRSSDSSVRVLVTVSDTGIGIS 755

Query: 160 FPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +            G+         +    V  L       +  +            L 
Sbjct: 756 EEQLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGTTFYLSLP 815


>gi|228968594|ref|ZP_04129579.1| hypothetical protein bthur0004_53660 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228791086|gb|EEM38703.1| hypothetical protein bthur0004_53660 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 404

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E    ++  +   L       
Sbjct: 178 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVLGFLQLLKEENTYEKHNKYFHLMIEELNR 237

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +L          +  +  + ++         +V  +   E +   
Sbjct: 238 ANSIITEFLSMGNTRKLDLQMLDLNSIIRDIIPLIKIDTYNQNKYIQVDTNDIPELLLNR 297

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + ++   G     PE   ++    
Sbjct: 298 NEIRQLLMNLYRNGLEAMNTGEVLTISTYKEGQNCVVLAVHDQGKGI-RPEVLEKLGTPF 356

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 357 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 393


>gi|239827569|ref|YP_002950193.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239807862|gb|ACS24927.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 597

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +        + E+ ++I  
Sbjct: 360 MTEERRL----DKLRKDFVANVSHELRTPIAMLQGYSEAIIDDIAATDEEKKEMAKVIYD 415

Query: 56  SSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------ 104
            S+     +  +       A   T   +++  +  IE++I  F  + K  Q+        
Sbjct: 416 ESLRIGRLVNDLLDLARMEAGHITLDYETVQLVPYIERIIRKFQGLAKEKQIDLSAEFKN 475

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              +         ++L NL   A     + G V I V+ S +     ++ +G+     + 
Sbjct: 476 EDIQITMDPDRIEQVLTNLIDNAIRHTDKNGMVKIIVERSGDGVTIHVQDSGSGIPEEDL 535

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +   +K  +            +  L 
Sbjct: 536 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFYLP 591


>gi|162455389|ref|YP_001617756.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161165971|emb|CAN97276.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 506

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 70/231 (30%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------SM 58
                      A L   + HD+ +P+ A+  S+  L++ G   E      ++        
Sbjct: 276 ESLERQREAQFAFL-GGVAHDLRNPLSALRLSVGFLNDGGPPSEPRVQRTMALVGRQVDR 334

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KI 109
              +    +  +      +D  +   D+ +++++   + + V      +           
Sbjct: 335 LERMVGDLLDASQIEACKLDLRVEERDLRELVQEAAELYRPVSPEHPIDLSLPEAPVLVR 394

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +    ++L NL   A    P GG++ ++V         +++  G      +    + +
Sbjct: 395 CDATRIQQVLNNLLSNALKYSPAGGQIDVAVHGGAGRAEIAVRDRGVGIEAADL-AHLFE 453

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      I    +       +   +  RLL E       V    L +
Sbjct: 454 PFQRLKASAGAIPGTGLGLAVAKRIVEAHGGRLLVESEPGAGSVFRVELPR 504


>gi|154684869|ref|YP_001420030.1| YclK [Bacillus amyloliquefaciens FZB42]
 gi|126363009|emb|CAM35824.1| hypothetical protein YclK [Bacillus amyloliquefaciens FZB42]
 gi|154350720|gb|ABS72799.1| YclK [Bacillus amyloliquefaciens FZB42]
          Length = 476

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           MAKN+  +               + + H++ +P+  I+  +E L+        +++   L
Sbjct: 231 MAKNLKQSREQIDRLEKRRRQFIADVSHELRTPLTTINGLVEGLNSNTIPEKDKEKCFSL 290

Query: 53  IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   +   +  +K                      ++    + +      +      R+Q
Sbjct: 291 ISEETKRMLRLVKENLDYEKIRSQQIKLDKLSLPLIEVFEIIKEHLNQQAEEKQNQLRIQ 350

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           V    +         +IL+N+   +     +G       +  K      ++  G      
Sbjct: 351 VEDGVKVFADYDRLIQILVNITKNSIQFTQKGDITLRGYEGYKETV-IEIEDTGIGISKE 409

Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    + +    +V         + +    V  L   +K  +  +         +  L 
Sbjct: 410 EIEHIWERFYKADVSRTNTAYGEYGLGLSIVRQLVEMHKGTIDIDSEKGKGTTFTIRLP 468


>gi|315658045|ref|ZP_07910918.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus lugdunensis M23590]
 gi|315496935|gb|EFU85257.1| phosphate regulon sensor histidine kinase protein PhoR
           [Staphylococcus lugdunensis M23590]
          Length = 569

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 60/221 (27%), Gaps = 20/221 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKF 66
            +L     + + H++ +PI +I    E L E   +D       + +I   S      +  
Sbjct: 339 ENLRREFVANVSHELKTPITSIKGFAETLIEGAKDDVASLDMFLNIILKESNRIESLVMD 398

Query: 67  MRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +               Y    +      D  Q       ++   ++S          + A
Sbjct: 399 LLDLSHIEQQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDIIFKANKNKIA 458

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           +++ NL   A        +V + V   +++    ++  G      E    F +    +  
Sbjct: 459 QVITNLLSNAINYSLENNRVIVRVYRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKA 518

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    +       +   +   +  +   +        
Sbjct: 519 RSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVT 559


>gi|289550551|ref|YP_003471455.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis
           HKU09-01]
 gi|289180083|gb|ADC87328.1| Phosphate regulon sensor protein PhoR [Staphylococcus lugdunensis
           HKU09-01]
          Length = 543

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 60/221 (27%), Gaps = 20/221 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKF 66
            +L     + + H++ +PI +I    E L E   +D       + +I   S      +  
Sbjct: 313 ENLRREFVANVSHELKTPITSIKGFAETLIEGAKDDVASLDMFLNIILKESNRIESLVMD 372

Query: 67  MRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +               Y    +      D  Q       ++   ++S          + A
Sbjct: 373 LLDLSHIEQQRELETAYVNLSELAHNTVDNLQNQAKDKNIEIIDEISPDIIFKANKNKIA 432

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           +++ NL   A        +V + V   +++    ++  G      E    F +    +  
Sbjct: 433 QVITNLLSNAINYSLENNRVIVRVYRQQSKVYLEIQDFGIGISKEEQKHIFERFYRVDKA 492

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    +       +   +   +  +   +        
Sbjct: 493 RSRDSGGTGLGLSITKHIVEAHHGVISVKSEPNKGSTFKVT 533


>gi|297619344|ref|YP_003707449.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
 gi|297378321|gb|ADI36476.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus voltae A3]
          Length = 654

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 67/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           ++K+        +L + L +   H++ +P+ ++   +EL+ +         + + + +  
Sbjct: 395 LSKSYDELKELDNLKSDLIAIASHELRTPLTSVKGYVELVLDGTMGEVNEAQSKCLSIAN 454

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108
            +       +  M            +       +V  D +  + +        +      
Sbjct: 455 DNIDRLRRLIDSMLDLSKIERGELQMQKELMNMKVAVDEVFENLKPLFDEKNIRLVKDVQ 514

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       +++ NL   A    P  G++ +   + +      ++ +G      +  
Sbjct: 515 NLSLYGDKDRLMQVITNLVENAIKFNPTNGEIYLGAYEDEGNIHLIVQDHGAGIPEKDLE 574

Query: 163 -KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +  S        +       +   ++  +  E           +L 
Sbjct: 575 KIFDRFYQVDSSSKRPKGGSGLGLAVCKSIVEAHEGIIWVESELGKGSTFHVILP 629


>gi|150009789|ref|YP_001304532.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938213|gb|ABR44910.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1045

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA++      S  L +   + + H+I +P+ AI     +L      ++  +   +   + 
Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 728

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +   + Y      L  L     +      V    +     
Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788

Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A      G           N   F ++  G      ++  
Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGLISFGYKLRDDNTLWFYVEDTGCGIPENKRKD 848

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +      ++  + K  +  + ++         L 
Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898


>gi|328954651|ref|YP_004371984.1| integral membrane sensor signal transduction histidine kinase
           [Coriobacterium glomerans PW2]
 gi|328454975|gb|AEB06169.1| integral membrane sensor signal transduction histidine kinase
           [Coriobacterium glomerans PW2]
          Length = 544

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 77/237 (32%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA ++  +L        L S + H++ +P+ A+  ++E + +     +DE ++ +   + 
Sbjct: 299 MATSLENDLKHER---RLTSDVAHELRTPLMAMLATVEAMQDGVLPADDEHLETVASETR 355

Query: 59  SAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------ 105
                  + + L+     +    I   DI   ++  +A  +++ V+              
Sbjct: 356 RLSRLVQQMLDLSRMEMRTSKLNIERVDIIPFVQAIVASQQQLFVARDLRLRFADETQGR 415

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       + ++NL   A    P GG V +SV+  +   + S+K  G      +  
Sbjct: 416 SVCIEMDPDMITQAIINLLSNAMRYTPEGGWVVVSVRSERRFVMISVKDTGIGIAKEDLS 475

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I                   +           +   +  E   +     +  L +
Sbjct: 476 -RIFSRFWRADASRAREAGGLGVGLAVTKQSIERHHGYISVESELEKGTTFTIHLPR 531


>gi|258516939|ref|YP_003193161.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780644|gb|ACV64538.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 908

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 71/222 (31%), Gaps = 13/222 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + I   L  ++L+  + + I H+I +P+  +   L+++ E     +  Q   L     
Sbjct: 679 LEQEIA-RLDRLNLIGEMAAGIGHEIRNPMTTVRGFLQMMAEKNDCLKYKQYYDLMIEEL 737

Query: 61  II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         K   +          L  L  + Q           + +      + 
Sbjct: 738 DRANSIITEYLSLAKNKCVNLKIQSLNQILDVLYPLIQATAMREDKFIVLSLGDVPNLLL 797

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +E  +++LNL      ++  GGK+ I       +    ++  G+    PE   ++   
Sbjct: 798 DEKEIRQLILNLSRNGLEAMSPGGKLIIKTMTCSGKVALVVQDEGSGI-RPEIIKKLGTP 856

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +  +   +       +A+ +K  L  E   +     S  
Sbjct: 857 FFTTKNNGTGLGLSVCYSIANRHKATLKVESN-NMGTTFSVW 897


>gi|228944402|ref|ZP_04106775.1| hypothetical protein bthur0007_5760 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228815304|gb|EEM61552.1| hypothetical protein bthur0007_5760 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 462

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPSEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGTITVMSEVDHGSCFIISLP 454


>gi|212559138|gb|ACJ31592.1| Sensor histidine kinase [Shewanella piezotolerans WP3]
          Length = 696

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +     + +  L AL  L + I H+I +P   I  ++ELL  +     D V + I L 
Sbjct: 438 LNETRQQLVINEKLTALGELTAGIAHEINNPTAVILGNMELLKYELGDNADVVEEEIELV 497

Query: 57  SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRV---QVSW 104
                     +R    Y+                 + ++  ++   I   + V   +++ 
Sbjct: 498 IQQVGRISTIIRSLLQYSRPGEFNAPLEMHQITPIIEEMLVLVRHSIQKQEVVLNQELNA 557

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLAR 159
           +        +  ++L+N+ + A  ++   G++ I   D             ++  G    
Sbjct: 558 SYPIQVNRPQLLQVLINIVVNAAHAIDDKGRIWIRTYDWVQRGEPIGVKIEIEDEGKGIP 617

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E   +I D    +  D   +       +       +          + +  L
Sbjct: 618 EEELN-RIFDPFYTTRKDGTGLGLSLSYGIIKRIGGTIDVTSTVGKGSMFTIGL 670


>gi|156743104|ref|YP_001433233.1| nitrogen specific signal transduction histidine kinase NtrB
           [Roseiflexus castenholzii DSM 13941]
 gi|156234432|gb|ABU59215.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Roseiflexus castenholzii DSM 13941]
          Length = 681

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 63/231 (27%), Gaps = 23/231 (9%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +  L A   L + + H+I +P+ +I N L LL   G      + + L S     
Sbjct: 448 EAIMRQNERLAASSRLAAIVAHEINTPLQSIQNYLYLLRAHGAAQSG-EFLDLVSDEICR 506

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----------- 111
               +R         D  I L D   +IE  + +                          
Sbjct: 507 VSGLLRRLLDLHRPGDGAIELIDCNALIERVLLLLGGTLAGSGIRVERSLTTPLPPVSGG 566

Query: 112 SRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                ++LLNL + A  ++P            +    Q         ++  G     P+ 
Sbjct: 567 RDALTQVLLNLLINAIDAMPCGGTLRIATRHSLETIDQSPVACVQIMVEDTGPGI-MPDL 625

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +      +       +  ++   L  +            L 
Sbjct: 626 QERIFDPFFTTKPHGSGLGLTVSRQIVEQHGGMLRLQSGSGGGATFIVTLP 676


>gi|187920903|ref|YP_001889935.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
 gi|187719341|gb|ACD20564.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phytofirmans PsJN]
          Length = 721

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 54/234 (23%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N+    +         + + H++ +P+  I    ++L+      E  +    S   + 
Sbjct: 252 ARNLAEAANRAK--GEFLANMSHELRTPLNGILGYAQILERDAALSERQRERASSIRHSG 309

Query: 62  IRLKFMRLAFGYTGSVDSLIGL-----------------GDIEQVIEDFIAVDKRVQVSW 104
             L  +         +++                         +  +  +     +    
Sbjct: 310 EHLLTLIEDTLDFARIEAGKLRVEIGDVPLAGFVDVIRDIIDVKAEQKRLDFICEITGDA 369

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   R   +++LNL   A      G       +   N   F ++  G      +  
Sbjct: 370 PVGVRADERRLRQVMLNLLANAVKFTDSGCVTLHISRSESNRVRFEVRDTGIGIGHDQLN 429

Query: 165 TQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T        G  E       +               +  E            L 
Sbjct: 430 TIFEPFEQLGAAERRAGGAGLGLAISREFVRAMGGEIEVESRIGQGSTFRFELP 483


>gi|308067145|ref|YP_003868750.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305856424|gb|ADM68212.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 496

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 64/233 (27%), Gaps = 27/233 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
            + +   +          +   H++ +P+ +IH  LE+L      +       ++ +   
Sbjct: 266 ERELQMQMRR------FIADASHELRTPLTSIHGFLEVLLRGAASNPKQLQSALESMYGE 319

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           S      +  + L      + +  +         L    Q++           ++     
Sbjct: 320 SKRMNKLVSDLLLLAKLDRTPELKLEDISLDALLLEMKPQLLMLAGTRKVVFDMTAGIRV 379

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQI 167
           +    +  +++LNLF  A         V      +  +     ++ NG      E+  +I
Sbjct: 380 LAEGDKIKQVVLNLFHNAVQHTDMERGVIQVNLSAGKKLVDIQIRDNGPGM-SKEQLERI 438

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +     +       +   +   +  E       V    L 
Sbjct: 439 FERFYRGDESRTRSSGGAGLGLAITQSIVEAHGGNITAESTPGTGSVFKVTLP 491


>gi|256838460|ref|ZP_05543970.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739379|gb|EEU52703.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 1045

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA++      S  L +   + + H+I +P+ AI     +L      ++  +   +   + 
Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 728

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +   + Y      L  L     +      V    +     
Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788

Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A      G  +        N   F ++  G      ++  
Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKD 848

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +      ++  + K  +  + ++         L 
Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898


>gi|255012920|ref|ZP_05285046.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1045

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA++      S  L +   + + H+I +P+ AI     +L      ++  +   +   + 
Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 728

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +   + Y      L  L     +      V    +     
Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788

Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A      G  +        N   F ++  G      ++  
Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKD 848

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +      ++  + K  +  + ++         L 
Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSVEGKGSRFWFTLP 898


>gi|254415932|ref|ZP_05029689.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177359|gb|EDX72366.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1821

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 67/246 (27%), Gaps = 35/246 (14%)

Query: 2    AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDE 48
              N   +L++ +L          L S + H++ +P+ AI    E L E         + +
Sbjct: 1304 ESNERISLANAELARATRLKDEFLAS-MSHELRTPLNAILGLAEALQEEVYGSLTPKQHK 1362

Query: 49   VMQLIRLSSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             +  I  S    +  +  +       +   + SV  +      E  +       ++  + 
Sbjct: 1363 SLATIEQSGKHLLDLINDILDLSKIESGKMSLSVSLVSVDSLCESSLTFIKQQAQQKNIR 1422

Query: 104  WTGEKID-------LSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKIN 154
                            R   ++L+NL   A    P      + ++      +   S+   
Sbjct: 1423 LEYHIAPGLSEIEVDERRIRQVLVNLLSNAVKFTPDGGKVSLQVTTDPDGEKLQLSVTDT 1482

Query: 155  GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G     PE   ++    V              +    V  +       +  E        
Sbjct: 1483 GIGI-APENLDKLFKPFVQLDSSLSRRYAGTGLGLALVRRIVELQGGSIALESEVGKGSC 1541

Query: 209  LSALLE 214
             +  L 
Sbjct: 1542 FTVNLP 1547


>gi|56420224|ref|YP_147542.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380066|dbj|BAD75974.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 457

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53
           + +  +L+ +    +   + I H++ +P+  +    ++     + +E          +  
Sbjct: 223 QTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLSEEQRANYMAIIYEEA 282

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTG 106
                      +  +L             L      + + +    +        Q   + 
Sbjct: 283 EKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSV 342

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                 +   ++++N+   A      G  V ++V   K   + ++   G      +    
Sbjct: 343 MAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRI 402

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +   +       +       +   +   +           +   L 
Sbjct: 403 FERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTILITLP 455


>gi|15614826|ref|NP_243129.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174882|dbj|BAB05982.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 473

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMS 59
           MA  +     S +    L S I H++ +P+  I     LL    G+ ++      +    
Sbjct: 228 MASRLKQLTESRN---ELISNISHELRTPLTYIKAYAALLKKREGLTEDGKDQAMIIHEE 284

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SW 104
           AI   + +   F      +  +     +  +E  +    RV                   
Sbjct: 285 AIRMERLVGDLFELMKLEERNVSFHLTKTDLEAVVERSVRVSTIEGKKKNVTLAIHKEHS 344

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
               +  S    +++ NL   A    P  G + +++     +N+ S+  NG        P
Sbjct: 345 PLFSLVDSGRLEQVMQNLLSNAIRHTPSNGTINLTLYAEDRKNVISVSDNGEGIDSDKLP 404

Query: 162 EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +    +           +       L  +    +  +         + +  K
Sbjct: 405 FIWDRFYRADRSRNSKYGGTGLGLAITKQLVEQMGGTIFVDSEKGKGTTFTLIFAK 460


>gi|226364244|ref|YP_002782026.1| two-component histidine kinase PhoR [Rhodococcus opacus B4]
 gi|226242733|dbj|BAH53081.1| two-component histidine kinase PhoR [Rhodococcus opacus B4]
          Length = 488

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 64/232 (27%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMS 59
           A       S   +     +   H++ +P+  I    EL  +  + D    M  I   +  
Sbjct: 256 ASEESARRSEEKMR-RFVADASHELRTPLTTIRGFAELYRQGAMTDTETLMNRIEGEASR 314

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEK 108
             + ++ + +               D+  V  D +   + V               T E 
Sbjct: 315 MGLLVEDLLMLARLDAQRPLETRPVDLLSVASDAVHGARAVAPERSITLDVRPGPGTPEV 374

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
           I       ++L NL   A    P    VT+ +  +++  +  +   G      +    F 
Sbjct: 375 IGDEARLRQVLGNLLANAVKHTPATADVTVRLGTTEHSVVLEVADTGPGLTEEDAARVFE 434

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +           +    V  L   ++  +  +            L +
Sbjct: 435 RFYRTDASRTRESGGSGLGLSIVAALVAAHRGAVTVDSRPGEGATFRVELPR 486


>gi|160885771|ref|ZP_02066774.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
 gi|156108584|gb|EDO10329.1| hypothetical protein BACOVA_03775 [Bacteroides ovatus ATCC 8483]
          Length = 563

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    E++ +   E+E  + +++ S + 
Sbjct: 326 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMICQTEEEEERKEFVKIISSNN 385

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
           I+ L+ +               +T +   +  L +              VQ+     +  
Sbjct: 386 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQILFTEKADQ 445

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A    P+G        +   +   F +K  G      +K 
Sbjct: 446 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 504

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +  V   S I    +      ++       +  E  +         + +
Sbjct: 505 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 557


>gi|154509393|ref|ZP_02045035.1| hypothetical protein ACTODO_01924 [Actinomyces odontolyticus ATCC
           17982]
 gi|153799027|gb|EDN81447.1| hypothetical protein ACTODO_01924 [Actinomyces odontolyticus ATCC
           17982]
          Length = 480

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 50/204 (24%), Gaps = 11/204 (5%)

Query: 22  ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRL-----AFGYT 74
           + H++ +PI  +   +ELLD  +     E   L+          +  +            
Sbjct: 266 VSHELRTPITVVRGHMELLDPDDHDDVVETRALVIDEIDRMGTLVGDLLELARASDTVNP 325

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
            S D       +             +  +             +  L L   A      G 
Sbjct: 326 ASTDLAALTEAVLDKARALGDRQWTLDEAAQVTCCLDPTRITQAWLQLAQNAVQYSADGT 385

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDG-NVESTIDSHDIQFYYVILLA 190
            + I            ++  G      +      + V G     ++    +    V  +A
Sbjct: 386 LIAIGSGADSQWARLWVRDRGIGIAPDDIECVRQRFVRGTAGTESVAGSGLGLNIVESIA 445

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   L  E         + ++ 
Sbjct: 446 RAHGGHLDIESTPGVGSTFTLVIP 469


>gi|73662570|ref|YP_301351.1| respiratory response protein SrrB [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72495085|dbj|BAE18406.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 593

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 59/218 (27%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   +      +  +       
Sbjct: 372 ANVSHELRTPISLLQGYTESIVDGIVTEPAEIHESLSIVLDETKRLNRLVNELLNVARMD 431

Query: 74  -----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                                   ++  +D          +        S    ++L NL
Sbjct: 432 AEGLTVKKVVQPIDHLLDKVQQKYQKHAKDLGLNMNLSPNTHNQMWYYDSDRIEQVLTNL 491

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID-- 177
              A      G ++ I   +++ ENI  +   G+        + F +    +        
Sbjct: 492 IDNASRYTEPGDEIKIEFGETQTENILYISDTGSGIAPEHLQQVFDRFYKVDTARKRGKQ 551

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   ++ HE+   +  +            L K
Sbjct: 552 GTGLGLFICRMIIHEHGGTIDVKSTLGKGTTFIITLPK 589


>gi|311693144|gb|ADP96017.1| extracellular solute-binding protein, family 3 [marine bacterium
           HP15]
          Length = 902

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 67/255 (26%), Gaps = 42/255 (16%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           A+ +     +  L  +   + + H+I +P+ A+    +LL     + +    +      +
Sbjct: 539 AERLAREAEAASLAKSEFLANMSHEIRTPMNAVIGYSDLLSNSVTDPQQRNYLDAIRAGS 598

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              L                MRL +        L  +  I  +      +   V V    
Sbjct: 599 RSLLMLINDILDLSRIEAGKMRLDYSAVSVRRLLDDVRHIFDLRAREQGITLEVSVDSRM 658

Query: 107 E--KIDLSRERAKILLNLFMVAHASLPRGGKV------------------TISVQDSKNE 146
               +       ++L NL   A      GG                      + +    +
Sbjct: 659 PGAMMLDETRLRQVLFNLVGNAIKFTHDGGVTVRATAKPLKKRSAEAEQNPEAPERQYYK 718

Query: 147 NIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPE 200
            I ++  +G     P++  +I D                 +       LA      L  E
Sbjct: 719 LIVTVSDSGIGI-PPDQVERIFDAFEQQEGQNTRRYGGTGLGLAISRKLARMMGGELEVE 777

Query: 201 IIDDHNVVLSALLEK 215
                  V +  L +
Sbjct: 778 SEQGSGSVFTVTLPR 792


>gi|255011930|ref|ZP_05284056.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 543

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           +   +     S  L +   + + H+I +P+ AI     LL  ++  +  E ++       
Sbjct: 308 LNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIE 367

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------- 104
                L F+         ++S     ++     + +  D                     
Sbjct: 368 KNGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADIARMQRLNVKPGVELIADLPA 427

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
                        +++ NL   A     RG       +  + +    ++  G        
Sbjct: 428 EDVSITADPVRLEQVVNNLINNAIKFTSRGSIRIGYRRRGEKDVELFVEDTGKGMSEEVI 487

Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G+  S +    +       +       +  E            L 
Sbjct: 488 AHVFERFYKGD--SFVQGTGLGLAICKTIVEHFGGEIRAESEVGEGARFEVCLP 539


>gi|261419125|ref|YP_003252807.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319765942|ref|YP_004131443.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261375582|gb|ACX78325.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317110808|gb|ADU93300.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 354

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 62/231 (26%), Gaps = 20/231 (8%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           ++  NL +  ++     S + H+I SP+ +I      L             + +I    +
Sbjct: 118 DMAANLQAMEEMRQEFISNVSHEIGSPLTSIRGFARALKNENLSREQRMHYLDIIETECV 177

Query: 59  SAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 + +                +  +D+ +    +    +          +      
Sbjct: 178 RMSKLSENLLRLAMLDSDRHPFHPTSYRLDTQLQTLILHCEPQWAEKELDMCVMLEKVVI 237

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                  +++ LNL   A    P+GG +TI +Q    + I +    G      +    F 
Sbjct: 238 TAYEDLLSQVWLNLIHNAIKFTPKGGTITIQLQRRGEQAIITFSDTGPGISEHDQPRIFE 297

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +           +       +   +   +  +            L 
Sbjct: 298 RFYKADKSRHRAAGGSGLGLSIAKKIVDIHHGTISVQSQPGEGATFIVELP 348


>gi|218709488|ref|YP_002417109.1| putative sensor histidine kinase [Vibrio splendidus LGP32]
 gi|218322507|emb|CAV18666.1| putative sensor histidine kinase [Vibrio splendidus LGP32]
          Length = 675

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     + +  L AL  L + I H+I +P   I  ++EL+                 +
Sbjct: 430 LNQARDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMKFELGDEVARVDEEVHAI 489

Query: 50  MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           M+ I          L++ R         +      +     + +       +    Q++ 
Sbjct: 490 MEQIDRIRNITRSLLQYSRHGGVQDEITWQHINPIVDESITLVKTGAKKKGIVYVSQLNA 549

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M A  ++   G               +  I  ++  G    
Sbjct: 550 KTSVEVNRNQLLQILVNLQMNAIHAMDGQGTLTISSEDWVENGVSHGAIVHVEDEGCGI- 608

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  +I      +  D   +       +  +    +  E         S  L+
Sbjct: 609 KEEQLKRIFSPFYTTKRDGTGLGLSVSQSILSQTGGEIRVESEVGKGSRFSIYLQ 663


>gi|70726234|ref|YP_253148.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           haemolyticus JCSC1435]
 gi|68446958|dbj|BAE04542.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           haemolyticus JCSC1435]
          Length = 565

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 58/220 (26%), Gaps = 20/220 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +L     + + H++ +PI +I    E L     ++    D  + +I   S      +  
Sbjct: 339 ENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEESLDMFLNIILKESNRIESLVMD 398

Query: 67  MRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +               +    +      D  Q    +  +    ++           + A
Sbjct: 399 LLDLSHIEQQTEIETAFMNLSELAYTTIDNLQNQARYKDIKIVSEIEKDVIIEAHENKIA 458

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           +++ NL   A        +V + V    +E    ++  G      +    F +    +  
Sbjct: 459 QVITNLLSNAINYSLENNEVIVRVYREGHEVNLEIQDFGIGIDKSDQKHIFERFYRVDKA 518

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                    +       +   +   +  E       +   
Sbjct: 519 RSRDSGGTGLGLSITKHIVEAHHGTINVESNIGEGSLFKV 558


>gi|37520585|ref|NP_923962.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211579|dbj|BAC88957.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 1130

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 61/243 (25%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVA-------LLCSRICHDIISPIGAIHNSLELL------DEVGIEDE 48
            + +     + +LV         L S + H++ +P+ AI    +LL       E      
Sbjct: 612 QQRLQIESQNQELVEADRQKNNFLAS-MSHELRTPLNAIIGFSQLLLRNKNLQEQPQVLL 670

Query: 49  VMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            +  +  +    +  +  +         ++   Y               +    +  +  
Sbjct: 671 QLDRVYQNGKIQLRLVNDILDLAKIKAGKVELRYQPVALEPFVREVYAALESLALQKNLS 730

Query: 100 VQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           V+++       +  +  ++   L      A     RG     + + + +     ++  G 
Sbjct: 731 VRIAVDPSIGSVETDPQQLRTILINLLSNAFKYTERGEVEVRARRPAADRFELEVRDTGV 790

Query: 157 LARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                ++     +     G          +       L       +            + 
Sbjct: 791 GIDPDQQQKVFDEFSRLEGAATRQASGTGLGLAICKRLVTLMGGEISLVSTPGVGSTFTV 850

Query: 212 LLE 214
            L 
Sbjct: 851 RLP 853


>gi|89099327|ref|ZP_01172204.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89085936|gb|EAR65060.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 529

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 11/215 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAI 61
             + +   + + + H+I +P+  I   ++++ E   +           ++ +       +
Sbjct: 306 EKLKVTGEMAASVAHEIKNPLTVISGFIQMIGEKENDYRQYISIIHSELERMNGIINEFL 365

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILL 120
              K              L     + +    +  V     +    G  +  + +  +  +
Sbjct: 366 YLSKPHTPNMKPQPLEPLLNETALLFESEAHYKNVHLLKDILPGCGTVLCDTGKLKQACI 425

Query: 121 NLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
           NL   +  ++P GG V IS + +   E    ++ +G      E    I      +     
Sbjct: 426 NLVQNSIDAMPEGGVVKISCRQTSTGEARILIEDSGCGM-PEELLQNIKKPFFTTKESGT 484

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       +  ++K RL               L 
Sbjct: 485 GLGLMITEQIIQQHKGRLSITSRMGSGTTAEIHLP 519


>gi|150391006|ref|YP_001321055.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950868|gb|ABR49396.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 467

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 73/230 (31%), Gaps = 19/230 (8%)

Query: 5   ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
           +  +L     L   L S I H++ +P+  + + +E + +      +E + + +      I
Sbjct: 238 LATSLEEQKTLRKRLTSDISHELRTPLTILQSHIEAISDGIWEPTEEKLSICKNEVNRLI 297

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                           + L    +     +  + D  +       +    ++        
Sbjct: 298 KLVAELQDLTDIEKHQIYLQLENSQISKVIDEVLDGFEYQFKQKQITLEREIQGGINIDI 357

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167
              +  +I++NL   A       G V++S+++ K+    ++  NG      +    F + 
Sbjct: 358 DQDKMKQIVINLLSNALKFTDHDGTVSVSLKEEKDGVRLTVIDNGIGIENEDIPYVFERF 417

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++          I       L   ++  +  E   +     + +L +
Sbjct: 418 YRSDLSRNRSTGGAGIGLTITKSLVEAHQGMIFVESEKEKGTKFTVILPR 467


>gi|116750533|ref|YP_847220.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116699597|gb|ABK18785.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 733

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 74/245 (30%), Gaps = 32/245 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------- 51
            KN+   L  +  + A+  L   I HD  + + AI    + L+     ++ ++       
Sbjct: 349 QKNLEEQLRQAQKMEAVGRLAGGIAHDFNNLLTAITGYADTLESNLKGEDALRKNAEEIR 408

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++      L F R        +D    +  +E+++   I  +  +  +       
Sbjct: 409 RAAERAAALTSQLLAFSRKQVLRPRVLDLRDVVARMEEMLRRLIGENIALCTAVDEGLWR 468

Query: 111 LSRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLK 152
           +  ++ +I   +      A  ++P+GG+                     +  +  + ++ 
Sbjct: 469 VKADQGQIEQVIMNLVVNARDAMPQGGRLLIEARNVELDGSYVSRHMAVNPGSYVLLAVS 528

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            +G      E  + + +    +        +    V  +  ++   +             
Sbjct: 529 DDGMGM-SSETISHLFEPFYTTKEQGKGTGLGLATVYGIVTQSGGHIWVYSEPGEGTTFK 587

Query: 211 ALLEK 215
             L +
Sbjct: 588 IYLPR 592


>gi|295402033|ref|ZP_06811994.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975924|gb|EFG51541.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 456

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 54/215 (25%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFMRLAF 71
           + I H++ +P+  +    ++     + +E                        +  ++  
Sbjct: 240 ASISHELRTPLTYVKGYADIARRPNMGEEERNRYLSIIYEEAEHMQKLVKDLFELAKMDQ 299

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFM 124
                   L  L    + + D +    +            +       +   ++++NL  
Sbjct: 300 HSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYYCDGSITVHIDQKRFEQVMMNLLD 359

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
            A     +G  V+I V+  K+  +  +   G      +                 T    
Sbjct: 360 NALKYSDQGSIVSIDVRKEKHHIVIIVSDEGRGIPKEDLPHIFERFYRVDKSRSRTSGGT 419

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +   +   +           +   L 
Sbjct: 420 GLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454


>gi|261419916|ref|YP_003253598.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|319766730|ref|YP_004132231.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261376373|gb|ACX79116.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|317111596|gb|ADU94088.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 457

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53
           + +  +L+ +    +   + I H++ +P+  +    ++     + +E          +  
Sbjct: 223 QTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLSEEQRANYMAIIYEEA 282

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTG 106
                      +  +L             L      + + +    +        Q   + 
Sbjct: 283 EKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSV 342

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                 +   ++++N+   A      G  V ++V   K   + ++   G      +    
Sbjct: 343 MAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRI 402

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +   +       +       +   +   +           +   L 
Sbjct: 403 FERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTILITLP 455


>gi|297585568|ref|YP_003701348.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297144025|gb|ADI00783.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 608

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 65/233 (27%), Gaps = 24/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSM 58
                +          + + H++ +P+ ++ + LE L +       +  + +Q+    + 
Sbjct: 368 TEQERIEQER--REFVANVSHELRTPLTSMKSYLEALLDGAVNDSDVAPQFLQVTSNETD 425

Query: 59  SAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             I  +  +          D                +   E   +      +R       
Sbjct: 426 RMIRLVNDLLQLSKMDARDDHMLMAEVNIVNMIHHVIDRFEMSNKQENIQFRRRLPDVPL 485

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
             +    +  ++L N+   A    P GG +TI+++  K   I S+K  G        P  
Sbjct: 486 SVMGDRDKLVQLLDNMVSNAVKYSPEGGVITITLKQEKERLIVSVKDEGVGIPKENLPHV 545

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +     ++    +       +   +   +               L 
Sbjct: 546 FDRFYRVDKARSRSLGGTGLGLAIAKEIVEVHGGHIWVSSDWGKGTTFFFSLP 598


>gi|158522138|ref|YP_001530008.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510964|gb|ABW67931.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 483

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QL 52
           + +     S  L  L  L + + H+I +P+  I     ++    ++ + +        + 
Sbjct: 245 EALEQLRHSERLATLGRLSAGMAHEIGTPLNVISGRSRMIRSGDLDRDEVVAFSAIIEEQ 304

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EK 108
            +  +      L F R         D    +  +  ++    +  + V          + 
Sbjct: 305 AQRITKIMQGLLDFARRRKPDKTPQDMETIVKQVLDMLAPAASKARAVFKVIRHGDIPKV 364

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----------ENIFSLKINGNL 157
              + +  ++L N+ +    ++ +GG++ + +   +                 +K  G  
Sbjct: 365 PMDTIQVQQVLTNIVLNGIQAMEKGGQLEVELDVERKSHPEADVAAKAYLSIRIKDEGKG 424

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E    + D    +        +       +  E+   +  +         +  L 
Sbjct: 425 I-PAEHLQHLFDPFFTTKEVGQGTGLGLSIAYGIIEEHGGWIEVDSTPGQGTCFTVFLP 482


>gi|108763883|ref|YP_632940.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622]
 gi|4467966|emb|CAB37946.1| histidine kinase PhoR1 [Myxococcus xanthus]
 gi|108467763|gb|ABF92948.1| sensory box histidine kinase PhoR1 [Myxococcus xanthus DK 1622]
          Length = 454

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 63/224 (28%), Gaps = 21/224 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +PI AI    E L      +  +  +++++I   S      ++ 
Sbjct: 221 EKVRKDFVANVSHELRTPITAIRGYAETLQGGALNDPVMAPKMVEIIHRQSERLSELVED 280

Query: 67  MRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                     D+     D  +           + V      +   R  
Sbjct: 281 LLELSRLESREVSLKLARVTLADAAARAADTVRPKAGGKGQVVSLHVPQDLLAVGDPRAV 340

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--G 170
            ++LLNL   A    P GG+V +  +  +   +  +K  G           F +      
Sbjct: 341 EQVLLNLLDNAVKYTPAGGRVDVYGEYEQGRCVVRVKDTGVGIEAKHQSRIFERFYRVDK 400

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +    V  L       +  E   +     +  L 
Sbjct: 401 GRSRDMGGTGLGLAIVKHLLQAMDGEVKVESEPNGGSTFTIFLP 444


>gi|228943228|ref|ZP_04105695.1| hypothetical protein bthur0008_58140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973131|ref|ZP_04133722.1| hypothetical protein bthur0003_28930 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228979667|ref|ZP_04139992.1| hypothetical protein bthur0002_28420 [Bacillus thuringiensis Bt407]
 gi|228780062|gb|EEM28304.1| hypothetical protein bthur0002_28420 [Bacillus thuringiensis Bt407]
 gi|228786589|gb|EEM34577.1| hypothetical protein bthur0003_28930 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228816436|gb|EEM62594.1| hypothetical protein bthur0008_58140 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326940222|gb|AEA16118.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 801

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 17/225 (7%), Positives = 56/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQSMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  +   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 795


>gi|182413916|ref|YP_001818982.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
           terrae PB90-1]
 gi|177841130|gb|ACB75382.1| PAS/PAC sensor signal transduction histidine kinase [Opitutus
           terrae PB90-1]
          Length = 395

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 77/236 (32%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQ 51
            +     + +    +  LL + + H++ +P+ ++   L+L++            +   ++
Sbjct: 150 KRTTEARIENERTSSILLLAAGVAHELGNPLNSLTIHLQLMERRLKKARTAKDKDVAALE 209

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108
                  + + RL  +   F           +      + + +   ++ +++  G +   
Sbjct: 210 DSVAICRAEVRRLDGIITNFLEAVRPRVPDLVETQLAQVLNEVLRFQQGELADRGIEVEV 269

Query: 109 ---------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +    +  ++  N+   A  ++  GG++ +      +        NG   +
Sbjct: 270 ETPADLPLVMADRNQVKQVFFNIMKNAADAMQPGGRLRVRSHADDDNVYLLFGDNGAGIK 329

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +   ++      +    H +    V  +  ++  ++  E  +    +++    +
Sbjct: 330 QEDLI-RLFQPYHTTKAGGHGLGLMIVQRIMRDHGGQIGIESKEGVGTLVTLQFPR 384


>gi|158423290|ref|YP_001524582.1| sensor protein [Azorhizobium caulinodans ORS 571]
 gi|158330179|dbj|BAF87664.1| sensor protein [Azorhizobium caulinodans ORS 571]
          Length = 852

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 71/236 (30%), Gaps = 31/236 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   + HD  + + AI    +LL             +  I+ ++  A   
Sbjct: 473 QSQKMQAIGQLAGGVAHDFNNVLTAIIGYCDLLLASHRPSDPSFPDIMQIKQNANRAAGL 532

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116
           ++ +            +I L D+   +   +       ++   E             +  
Sbjct: 533 VRQLLAFSRRQTLRPQVIQLTDVISDLSMLLRRLIGETITLEVEHGRDLWPVKVDVNQFE 592

Query: 117 KILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFP 161
           ++++NL + A  ++P GG +T+  ++                 +  +  +   G     P
Sbjct: 593 QVIVNLAVNARDAMPGGGALTLRTRNVTAAETAALGDGTVAPGDYVLVEVVDTGTGI-PP 651

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   +I +    +        +    V  +  +    +L              L +
Sbjct: 652 EIMDKIFEPFFSTKEVGKGTGLGLSTVYGIVQQTGGTILATSTPGAGTTFRVFLPR 707


>gi|126731224|ref|ZP_01747031.1| phosphate regulon sensor histidine kinase, putative [Sagittula
           stellata E-37]
 gi|126708135|gb|EBA07194.1| phosphate regulon sensor histidine kinase, putative [Sagittula
           stellata E-37]
          Length = 345

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 16/226 (7%), Positives = 59/226 (26%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ A+   +E L     D+   +   + ++   +      +  +     
Sbjct: 118 FVANVSHELRTPLTALIGFIETLKGPARDDPVGQARFLSIMESEAARMNRLIGDLLSLSR 177

Query: 73  YTGSVDSLIGLGDI---------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                                    +         ++ +S     + +  +  ++   L 
Sbjct: 178 VEADERVRPTTRIDPAEIARSTLHGLRPIAEEAGVKLDLSVPATPVTIPGDEDQLRQVLT 237

Query: 124 MVAHASLPRGGK----------VTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD- 169
            +   ++   G+          V    +        ++   G        P    +    
Sbjct: 238 NLLENAIKYSGRGATVTVALNAVEYEPRVRGRGVRLTVSDTGPGIDQIHLPRLTERFYRV 297

Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +    +    V  + + ++ RL  +         + +L 
Sbjct: 298 DSHRSREMGGTGLGLAIVKHIVNRHRGRLRVDSELGKGTTFTVILP 343


>gi|84385504|ref|ZP_00988535.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84379484|gb|EAP96336.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 675

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 67/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEV 49
           + +     + +  L AL  L + I H+I +P   I  ++EL+                 +
Sbjct: 430 LNQARDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMKFELGDEVARVDEEVHAI 489

Query: 50  MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           M+ I          L++ R         +      +     + +       +    Q+  
Sbjct: 490 MEQIDRIRNITRSLLQYSRHGGVQDEITWQHINPIVDESITLVKTGAKKKGIVYVSQLHA 549

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M A  ++   G               +  I  ++  G    
Sbjct: 550 KTSVEVNRNQLLQILVNLQMNAIHAMDGQGTLTISSEDWVENGVSHGAIVHVQDEGCGI- 608

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  +I      +  D   +       +  +    +  E         S  L+
Sbjct: 609 KEEQLKRIFSPFYTTKRDGTGLGLSVSQSILSQTGGEIRVESEVGKGSRFSIYLQ 663


>gi|328954248|ref|YP_004371582.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454572|gb|AEB10401.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobacca acetoxidans DSM 11109]
          Length = 620

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSM 58
           +N     S ++ + +L   I HD  + + AI  ++ +              +     + +
Sbjct: 240 ENELIRTSKLESIGVLAGGIAHDFNNLLTAILGNIAMASLNADTKPFVLERLAEAEKACL 299

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113
            A    + +            L  +GD+ +     +     V+                 
Sbjct: 300 RAQNLTRQLLTFSKGEKPRKKLASIGDLLKTSASLMLRSSNVRRQANIPEALWWAEVDEE 359

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARFP 161
           +  + + +L + A  ++P+GG + I  ++                   +++  G     P
Sbjct: 360 QIQQAVNHLLINADQAMPQGGVIYIFAENFKIGEASRLPLTPGTYIKITIRDQGVGI-LP 418

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ D    +      +    V  +   +   +  E   +     +  L 
Sbjct: 419 EHLDKVFDPFFTTKRRGSGLGLSTVYTIIKNHDGYITVESTPNGGATFTVYLP 471


>gi|206896389|ref|YP_002246773.1| periplasmic sensor signal transduction histidine kinase, putative
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206739006|gb|ACI18084.1| periplasmic sensor signal transduction histidine kinase, putative
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 535

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 62/216 (28%), Gaps = 8/216 (3%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M + +        L AL    + I H+I +P+ AI    +++ + G   E          
Sbjct: 317 MREAMAL---QERLAALGRFSAGIAHEIRNPLTAIRGFSQMILKQG-SPEDKAYAEKILR 372

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                 K +R    Y     +     ++ +        + ++ +      +    E   +
Sbjct: 373 EQERVEKLVRDMLVYARPRTAEKKPINLYEFATQHFGENPQITLDIPKNLVWNLDEEYLL 432

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
            +   +V +A      +V +  +      +  +  NG      +   +I +    +    
Sbjct: 433 QIVSNLVGNAFDAGATQVWVEARREGQNLVLRVANNGTPIPQEDLG-KIFEPFYTTKSTG 491

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V   A      +  +       V   +  
Sbjct: 492 TGLGLAIVRSAAEIQGGSISVKQSSGK-TVFEIIFP 526


>gi|116748273|ref|YP_844960.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697337|gb|ABK16525.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 567

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 61/237 (25%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIEDE 48
           A +    L    +++L  L + + H+I +P+  I N   L+           + V     
Sbjct: 328 AADQARLLQQDKMISLGRLAASVVHEINNPLAGILNYARLMTKMLGKGMLASESVTKFQG 387

Query: 49  VMQLIRLSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVS 103
            + L+              L F R +   +  V     +     +        + R+   
Sbjct: 388 YLSLMESELSRCSKIVSNLLSFSRQSTLESAPVKVNELIAKSITLCEHKLSLQNIRIDTV 447

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLA 158
            + E   +  +  ++   L  +   ++       +         ++      ++  G   
Sbjct: 448 LSPENPVIPGDFNQLEQCLINLIFNAMDAMETGGVLTLESALIPAQKIVEIRVRDTGCGI 507

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +                   +       +   +   +  E       V +  L 
Sbjct: 508 AKEDLIYIFDPFFTTKKQGKGLGLGLSTTYGIIDRHHGAVSVESEPGKGTVFTIKLP 564


>gi|331086791|ref|ZP_08335868.1| hypothetical protein HMPREF0987_02171 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409957|gb|EGG89392.1| hypothetical protein HMPREF0987_02171 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 241

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 67/227 (29%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            +N    +    L+     + S++ H+I +P+  +++SL+L++    +   +Q    +  
Sbjct: 15  KQNPEIQILIEKLMKEYEFILSKMSHEIRNPLTLVYSSLQLMEAQHPQLTKIQHWSDTLE 74

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----------FIAVDKRVQVSWTGE 107
                   +     Y       + +      +                           +
Sbjct: 75  DVKYICGLLDELSSYNHGEHLNLSVFPFSVFLRHIALSFALSLEQTNIQFCSEIADNLPD 134

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   R+  ++LLNL   A  ++   G + + V  + +  I  +  +G      +  T I
Sbjct: 135 LIGDQRKLQEVLLNLLQNAKDAITENGLIRLKVFCNDHHVIVEITDDGCGLTSEQIPT-I 193

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   +       +   ++  L            +  L 
Sbjct: 194 FSPFTSYKTNGTGLGLAICKRIIDSHRGTLTVSSKPGSGATFTVSLP 240


>gi|332716522|ref|YP_004443988.1| sensor histidine kinase KdpD [Agrobacterium sp. H13-3]
 gi|325063207|gb|ADY66897.1| sensor histidine kinase KdpD [Agrobacterium sp. H13-3]
          Length = 900

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 57/232 (24%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLS 56
                  +  L   L + I HD+ +P+ AI  S   L +           + ++ ++  S
Sbjct: 658 RARLAAETDRLRTALLTSISHDLKTPLAAILGSAGTLKDFADDIPLEARTELLLTIVEES 717

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------GE 107
                     + +    +G+++   GL  +  ++   ++   ++ V              
Sbjct: 718 ERLNRFISNLLDMTRIGSGAMEPNYGLYFVGDMVGTALSRAAKIVVRHEIVLDIPSDLPM 777

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L NL   A    P    + I            +   G      +     
Sbjct: 778 LKVDPVLFEQVLFNLIDNAAKYAPEQTVIQIRGWRQGRHVFLCVADEGPGIPPDDTERVF 837

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
                    D       +               +  E          +  L 
Sbjct: 838 DSFYRVRKADHVQAGTGLGLSICKGFIEAMGGSIHAENRSGRTGAQFTISLP 889


>gi|319649813|ref|ZP_08003965.1| hypothetical protein HMPREF1013_00569 [Bacillus sp. 2_A_57_CT2]
 gi|317398487|gb|EFV79173.1| hypothetical protein HMPREF1013_00569 [Bacillus sp. 2_A_57_CT2]
          Length = 500

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 67/214 (31%), Gaps = 12/214 (5%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII--------- 62
           ++LV  L +   H+I +P+  I   ++LL E            + +              
Sbjct: 283 LELVGTLAASTAHEIRNPLTGIKGLIQLLSEKYTNTHDQYYFSVINDEISRINEIVSEFL 342

Query: 63  -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILL 120
              K            + +  L  +     +   V     +S     ++ ++++  +++L
Sbjct: 343 ILGKPAAQKMETLDLRNIIKELEPLIFSEANLHNVTFESAISDEPVMVECTKDQMKQVIL 402

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL   A  S+  GGK+TI +    ++    +   G+     E   +I      S      
Sbjct: 403 NLTKNAFESMEGGGKLTIKLNKMHSKCQLKIADTGSGISEDEI-EKIFHPFYTSKETGTG 461

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       + H     +     +     +   L 
Sbjct: 462 LGLVVCRRILHSFGGEIFITSKETKGTHVDIFLP 495


>gi|228903186|ref|ZP_04067320.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL
           4222]
 gi|228856468|gb|EEN00994.1| hypothetical protein bthur0014_43510 [Bacillus thuringiensis IBL
           4222]
          Length = 484

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +                 +  + ++ +S  G +I+     
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|228910523|ref|ZP_04074337.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL
           200]
 gi|228849087|gb|EEM93927.1| hypothetical protein bthur0013_46690 [Bacillus thuringiensis IBL
           200]
          Length = 484

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +                 +  + ++ +S  G +I+     
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|229096886|ref|ZP_04227855.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29]
 gi|228686496|gb|EEL40405.1| hypothetical protein bcere0020_21330 [Bacillus cereus Rock3-29]
          Length = 801

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++ +T     +  
Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIPC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795


>gi|229115874|ref|ZP_04245272.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3]
 gi|228667617|gb|EEL23061.1| hypothetical protein bcere0017_21650 [Bacillus cereus Rock1-3]
          Length = 801

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++ +T     +  
Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKIRIDFTPGIPLIPC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNIIKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795


>gi|218903110|ref|YP_002450944.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218540075|gb|ACK92473.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 253

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 19  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 75

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 76  TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 135

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++ +G      +    
Sbjct: 136 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 195

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 196 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 248


>gi|218899824|ref|YP_002448235.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218544331|gb|ACK96725.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 484

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +                 +  + ++ +S  G +I+     
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|75760732|ref|ZP_00740755.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491787|gb|EAO54980.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 484

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      +  + L      +                 +  + ++ +S  G +I+     
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEINLQLHS 360

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVIDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESELGKGTSIFFSLEK 478


>gi|262166054|ref|ZP_06033791.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio mimicus VM223]
 gi|262025770|gb|EEY44438.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio mimicus VM223]
          Length = 597

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLSTNKPERAEENLTR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103
           I   +       + ++     + S +          +          +  +   +  +V 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTAQFKAQMTKLELCEVD 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L R  +    I +Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALDRQAERLVQIRLQISEQQVQIFVDDNGPGIGL- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   ++ +    +  +   +       + H  +  L               L +
Sbjct: 537 ETLPKLFEPFHTTKKNGLGLGLSISQQILHSMQGELNVATAPIGGARFIISLPR 590


>gi|229097706|ref|ZP_04228661.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29]
 gi|228685651|gb|EEL39574.1| hypothetical protein bcere0020_29450 [Bacillus cereus Rock3-29]
          Length = 448

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 72/235 (30%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M K+I       ++     S + H+  SP+ +I    + L          +  +Q+I   
Sbjct: 218 MTKSIKEL---DEMRQEFVSNVSHEFQSPLSSIQGFSKTLQTEKMSEEERNHYLQIIEGE 274

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           S       K +            L       Q        + ++   +K + V +    I
Sbjct: 275 SKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFDVPDI 334

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     ++  N+F  +      GG V   V++ ++  I S+  NG      E   +
Sbjct: 335 TIQGDENLLHQVWSNIFTNSIKFSNDGGTVEFFVEELESSVIISISDNGIGM-EKEGMDR 393

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D            ++   +    V  +   +K  +           +   L K
Sbjct: 394 IFDRFYKVDTARARNVEGSGLGLSIVQKIVELHKGAVSVYSTKGEGTTVRVELPK 448


>gi|42521923|ref|NP_967303.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574453|emb|CAE77957.1| Sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 1132

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            KN     S     +   +++ H+I +P+ AI    ELL E  ++ +    + +   +  
Sbjct: 743 TKNEALKASQAK--SEFLAQMSHEIRTPMNAIMGMAELLKETRLDVDQKYYVTIFCKAGE 800

Query: 62  IRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WT 105
           + +      + L+    G V       D+++++ D   + K   +              +
Sbjct: 801 VLMSLINDILDLSKIEAGEVSIENIPFDMKKLMADVEDMMKPRALEKGLNCICEIAPGVS 860

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEK 163
              +    +  ++L+NL   +     +G            K+  + S+   G       +
Sbjct: 861 PHLMGDPTKLRQVLINLIGNSIKFTNKGQVRLVIGKNPSKKDTLLISITDTGIGIPEDRQ 920

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +              +       L      ++  +            + 
Sbjct: 921 HMIFQKFSQADNSVTRKYGGTGLGLAISKSLVELMGGQIWFKSRPGTGTTFFFTIP 976


>gi|262381341|ref|ZP_06074479.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296518|gb|EEY84448.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 761

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 59/233 (25%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49
           A+        M    L  + + H+I +P+ AI     L++   + +              
Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++LI      + +    M   F        +  +    Q++       +       
Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++L N    A         +V        +     ++  G      EK 
Sbjct: 646 VVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q+ D     +       +      ++A      +  +         +  L K
Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFTLTLPK 757


>gi|256840736|ref|ZP_05546244.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738008|gb|EEU51334.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 761

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 59/233 (25%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49
           A+        M    L  + + H+I +P+ AI     L++   + +              
Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++LI      + +    M   F        +  +    Q++       +       
Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++L N    A         +V        +     ++  G      EK 
Sbjct: 646 VVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q+ D     +       +      ++A      +  +         +  L K
Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFTLTLPK 757


>gi|254721310|ref|ZP_05183100.1| sensor histidine kinase [Bacillus anthracis str. A1055]
          Length = 357

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G+     +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352


>gi|229165353|ref|ZP_04293140.1| hypothetical protein bcere0007_3420 [Bacillus cereus AH621]
 gi|228618178|gb|EEK75216.1| hypothetical protein bcere0007_3420 [Bacillus cereus AH621]
          Length = 672

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E  I ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEESIYEKHNKYFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +     + ++         +V  +   E +   
Sbjct: 506 SNSIITEFLSMGNTKKSDLQMLDLNSIIHDSIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS      N  + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGRNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|124265292|ref|YP_001019296.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
 gi|124258067|gb|ABM93061.1| signal transduction histidine kinase-like protein [Methylibium
           petroleiphilum PM1]
          Length = 938

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           +A  +   +   +  +       SR+ H++ +P+  I    +L+   ++  +     Q +
Sbjct: 548 LADELSRGMQEAERASRAKSEFLSRVSHELRTPLNGILGFTQLMALDEDHPLAAPQAQRL 607

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106
                +    L  +      +    + + +  +   ++  +     +  S          
Sbjct: 608 ASVQRAGNRLLNLINDVLEISRIESAEVAVRTLAVDLDAALHASLSLVQSLARGRSITIE 667

Query: 107 -------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                        R   ++L+NL   A         V +++Q S      +++  G    
Sbjct: 668 PTPPSGLWVSGDERALEQVLVNLLSNAIKYSGEQSPVVLNLQRSDGTVKIAVRDRGVGL- 726

Query: 160 FPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  ++             I+   +       LA     R+    +       +  L 
Sbjct: 727 TAEQQARLFQPFDRLGAERRRIEGSGLGLVIARQLAEAMGGRIDVVSVPGAGSTFTLQLP 786


>gi|310820147|ref|YP_003952505.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393219|gb|ADO70678.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 798

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 74/240 (30%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
           A+ +   L  S  + ++  L + + H+I +P+  I ++L    E L++ G+ D     +R
Sbjct: 418 ARRLEMQLQLSERMASVGTLAAGVAHEINNPLAYISSNLAFLSEQLEQEGLSDRQRAEMR 477

Query: 55  LSSMSA-----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +   +                F R      G V+    +    +++ + +    ++ + 
Sbjct: 478 DAVQESLEGTRRVRLIVQDLKAFSRADDESQGPVEVHRVVQGSLRLVRNELEHRAQLTLE 537

Query: 104 WTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGN 156
                +        A++L+NL + A  + P       +                ++ NG 
Sbjct: 538 LNTVPLVLGNESRLAQVLVNLLVNALQAFPAERPAGDNRIRIVTRTAAERVHVQVEDNGQ 597

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I D    +        +       +       +  E            L 
Sbjct: 598 GM-TPEVQRRIFDPFFTTKPVGVGTGLGLSICNTIVQGMGGSIEVESTPGVGSTFRLNLP 656


>gi|295703383|ref|YP_003596458.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294801042|gb|ADF38108.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 527

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 69/222 (31%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
            +        + L   + + I H+I +P+ +++  ++L+ ++         ++       
Sbjct: 299 TEKFLRKTDKLSLAGEMAAGIAHEIRNPLTSLNGFIQLIHEDSSRYHSYTTIMLSELNRI 358

Query: 61  IIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +            +   +  S      +   E        V K    +        +
Sbjct: 359 NSIVGEFLLLAKPHDTVMKKHAFSTILNDVILLYESECVLKNVVVKTQVEAPHTYICCDA 418

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++L+NL   A  ++P GG++ ++V     +    +K  G         T I     
Sbjct: 419 NQIKQVLINLLKNALEAMPSGGEIHLNVTQHTKDLTIFIKDTGVGI-PSHLLTHIQKPFF 477

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    +  + +++K     +        +S  + 
Sbjct: 478 TTKPSGTGLGLVVIKNILYQHKGTFEIKSTVGEGTSVSLTIP 519


>gi|326316997|ref|YP_004234669.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373833|gb|ADX46102.1| integral membrane sensor signal transduction histidine kinase
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 595

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A +     S+    +   + I H++ +P+ +IH   EL+++   +    +   L   +A
Sbjct: 351 LAASEAQARSANRAKSEFLTAISHELRTPLTSIHGFAELMEQRLEQPSYREAAGLIRSAA 410

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSW 104
                 +             + +   +  + + +                 ++KR+    
Sbjct: 411 EHLNTLLSEILDLAKVQAGAMPIVPGDHAVRELVGTTVDLFAISAAQKGLTLEKRIAPDV 470

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +IL NL   A      GG              F +   G      +  
Sbjct: 471 PHMLRCDGLRLKQILNNLLSNALKFTREGGVRLEVDTAEARNLRFRVIDTGPGI-PADLH 529

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +        V +      +       LA     RL       H    +  L 
Sbjct: 530 EVIFEKFSQGGAEVSTQHGGTGLGLALSRGLAELMGGRLTVASETGHGACFTLELP 585


>gi|163940445|ref|YP_001645329.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163862642|gb|ABY43701.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 423

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 76/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 192 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 251

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112
           R  S+           +               I  ++         +   ++    I  +
Sbjct: 252 RAQSIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNTINITKEFSEGTIIGNT 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFHQCFLNLIKNSIEAMPCGGNLIISATVSNNKVIIRIQDSGVGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    I +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMRGSLKIRSIVNKGTTLTITFPK 413


>gi|148976162|ref|ZP_01812905.1| sensor histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145964557|gb|EDK29811.1| sensor histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 675

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 67/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---------DEVGIEDEV 49
           + +     + +  L AL  L + I H+I +P   I  ++EL+                 +
Sbjct: 430 LNQARDKLVVNEKLAALGELTAGIAHEINNPTAVILGNVELMKFELGDEVSRVEEEVHAI 489

Query: 50  MQLIRLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           M+ I          L++ R         +      +     + +       +     ++ 
Sbjct: 490 MEQIDRIRNITRSLLQYSRHGGVQDEITWQHINPIVDESITLVKTGAKKRGMVYVSNLNA 549

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M A  ++   G               +  I  ++  G    
Sbjct: 550 KTSVEVNRNQLLQILVNLQMNAIHAMDGQGTLTISSEDWVENGISHGAIVHVEDEGCGI- 608

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  +I      +  D   +       +  +    +  E         S  L+
Sbjct: 609 KEEQLKRIFSPFYTTKRDGTGLGLSVSQSILSQIGGEIRVESEVGKGSRFSIYLQ 663


>gi|47076746|dbj|BAD18291.1| unknown conserved protein [Geobacillus stearothermophilus]
          Length = 433

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 74/226 (32%), Gaps = 13/226 (5%)

Query: 1   MA-KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--- 56
           MA +        M+ V  L + I H+I +P+ A    ++L++E  +  E  +        
Sbjct: 188 MALRKRIIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAAEKRRQYARIALE 247

Query: 57  --SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109
               +  I   ++  A       + L    ++E+VI+    +     V           +
Sbjct: 248 ELDRAEAIITDYLTFAKPAPEMPEKLNVKLEVERVIDIIRPLANMSCVDIQASLAPFSVM 307

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  + LLN+   A  ++P GG + +         +  +   G      E+  ++ +
Sbjct: 308 GEREKFRQCLLNIMKNAIEAMPNGGTLWVYASLDNGRVLIRIADTGIGM-TKEQLDRLGE 366

Query: 170 GNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +    +    V  +       +  E        +S  L 
Sbjct: 367 PYFTTKGVKGTGLGMMVVYRIVESMNGTIRIESEIHKGTTVSIYLP 412


>gi|317480271|ref|ZP_07939376.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316903564|gb|EFV25413.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 867

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 62/228 (27%), Gaps = 18/228 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59
               L +  L +   + + H+I +P+ AI    +LL +          + ++ I ++   
Sbjct: 636 RDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLDAFSPEEVKQFVETININCTL 695

Query: 60  AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107
            +  +                  G+ +    + ++ +     +  D  +++         
Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRIEIPEGEDKL 755

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I  S    +++ NL   A      G      V + +      ++  G+      +    
Sbjct: 756 VITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSGISEDAQKHIF 815

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E +      +       +       +              ++ 
Sbjct: 816 ERFYKEDSFTQGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|308068363|ref|YP_003869968.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857642|gb|ADM69430.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 600

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 61/230 (26%), Gaps = 28/230 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL-- 64
            ++ +   + + H++ +PI A+    E L      +       +Q+I   S      +  
Sbjct: 366 ENMRSEFVANVSHELKTPIAAVKGFAETLLGGGVKDEETARSFLQIIYDESERLNRLIGD 425

Query: 65  ---------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                    K   L          +  L +    +     +   + +           + 
Sbjct: 426 ILELSKIESKRSTLDCSPVHVSSFIESLLEKLNNVAAKKRITLHMDIPDELFMEADEDKL 485

Query: 116 AKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +I LNL              +   +TI  ++   + +F++   G      +   +I + 
Sbjct: 486 QQIFLNLLSNGINYTLDGGKVKIKVLTIQRENDTEKVVFTVSDTGIGIPKKDLP-RIFER 544

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +    V  L   +   L  E         +  L 
Sbjct: 545 FYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELP 594


>gi|270296516|ref|ZP_06202716.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273920|gb|EFA19782.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 867

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 62/228 (27%), Gaps = 18/228 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59
               L +  L +   + + H+I +P+ AI    +LL +          + ++ I ++   
Sbjct: 636 RDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLDAFSPEEVKQFVETININCTL 695

Query: 60  AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107
            +  +                  G+ +    + ++ +     +  D  +++         
Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRIEIPEGEDKL 755

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I  S    +++ NL   A      G      V + +      ++  G+      +    
Sbjct: 756 VITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSGISEDAQKHIF 815

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E +      +       +       +              ++ 
Sbjct: 816 ERFYKEDSFTQGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|239905954|ref|YP_002952693.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795818|dbj|BAH74807.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 319

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 68/230 (29%), Gaps = 25/230 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------------DEVGIEDEVMQLIR 54
           L S  L A+  L S I H+I +P+  I   ++L             +++    + +  + 
Sbjct: 90  LHSQKLAAIGELSSGIAHEINNPLAIITQEIDLARELYGQDACPAPEDLAEIKDCLDQVG 149

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKI 109
                       +         V     L  + + +      +       ++  +     
Sbjct: 150 KQVARCRQITHKLLNFARKMEPVLQEEALERVIEDMAVLVEREAAGRGVAIRRDYDQSLP 209

Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  +     +++LNL   A  + P GG +T++        +  ++  G     PE   +
Sbjct: 210 PVRTDVPLLRQVILNLLTNALHATPEGGTITLATGRQNGRAVIEVRDTGCGI-PPENLPK 268

Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +        +       +       L  +       V +  L 
Sbjct: 269 VFDPFFTTKDPGKGTGLGLSLSHGIVARLGGNLTAQSAVGQGSVFTVSLP 318


>gi|160891792|ref|ZP_02072795.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
 gi|156858270|gb|EDO51701.1| hypothetical protein BACUNI_04249 [Bacteroides uniformis ATCC 8492]
          Length = 867

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 62/228 (27%), Gaps = 18/228 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59
               L +  L +   + + H+I +P+ AI    +LL +          + ++ I ++   
Sbjct: 636 RDRALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLDAFSPEEVKQFVETININCTL 695

Query: 60  AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107
            +  +                  G+ +    + ++ +     +  D  +++         
Sbjct: 696 LLALINDILDLSRIESGTMDFKFGAFNLAFIMQEVHESQRLSMPRDVELRIEIPEGEDKL 755

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I  S    +++ NL   A      G      V + +      ++  G+      +    
Sbjct: 756 VITDSVRLKQVVNNLINNAKKFTVTGSITFGYVTNREGYTTIFVEDTGSGISEDAQKHIF 815

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E +      +       +       +              ++ 
Sbjct: 816 ERFYKEDSFTQGAGLGLSICQTIVDRLHGSISVSSELGKGTRFEVVIP 863


>gi|189426456|ref|YP_001953633.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189422715|gb|ACD97113.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 473

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 2   AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52
            + +   L  +  L  V  L S I H+I +P+  I  +++ L             EV  L
Sbjct: 234 RETLEKRLYEAEHLSRVGQLASGIAHEIRNPLNYISLAIDHLRSEVVEQCPERAGEVTAL 293

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSW 104
                         +     Y   +          ++         E   A    ++   
Sbjct: 294 ADKIREEVRRANYMVINFMNYGRPLKLRKSEITYSELLERTLSVLYERLAAQQVTIEQRI 353

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLAR 159
           + +   L  +   +   +      A  ++P GG + +  +            K  G    
Sbjct: 354 SPDLPVLLLDPELMRNCITNFITNAAQAMPNGGTIVLEGELDDEPGWVRLGFKDQGCGIA 413

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   ++      +      +       +   +   +L           S  L 
Sbjct: 414 V-EDQEKVFQPYFTTKDVGIGLGLAITERIVKAHGGEILVASSPGEGTTFSVRLP 467


>gi|266623114|ref|ZP_06116049.1| phosphate regulon sensor protein PhoR [Clostridium hathewayi DSM
           13479]
 gi|288865122|gb|EFC97420.1| phosphate regulon sensor protein PhoR [Clostridium hathewayi DSM
           13479]
          Length = 656

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 70/241 (29%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49
            +    N ++  L A       + S I HD+ +P+  ++N LELL +           E 
Sbjct: 414 QRTAQLNSANEQLAASQSALREMISNISHDLKTPLTVLNNYLELLGDETVASSEQERTEY 473

Query: 50  MQLIRLSSMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           + +    ++     +  +                +  ++  +         +   + +  
Sbjct: 474 LGIAYHKNLDLQRLIHNLFEVTRMEGGTVSYRLEWVLALPLMEEAERKYGDLAGGMGLFF 533

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
             +     +      +   +L NL   A    P GG + + ++   +  + ++   G   
Sbjct: 534 TAEADDALKLKIDRNKIWSVLDNLVYNALRHTPEGGSIALGIKRRGDRAVLTVADTGEGI 593

Query: 159 ---RFPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P  F +             S  +  Y V   A      +  E +     V +   
Sbjct: 594 DAGHLPHIFERFYKVSPERGEKDGSSGLGLYIVKTTAEAMGGTVEVESVPGKGTVFTLTF 653

Query: 214 E 214
            
Sbjct: 654 P 654


>gi|224538905|ref|ZP_03679444.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519483|gb|EEF88588.1| hypothetical protein BACCELL_03801 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 652

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 60/228 (26%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        M   ++  + + H+I +P+ AI    E++     E E  + + +   ++ 
Sbjct: 287 AKQRAEEADRMK--SVFLANMSHEIRTPLNAIVGFSEIIALTEDEVEKAEYLNIIQKNSN 344

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                 + F        +  +  + ++          ++      
Sbjct: 345 LLLQLINDILDLSRIESGKSEMNFQLVEMTGLIDEVEKVHRLKMKTGIRLNVMRPDEEIW 404

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       ++L N    A  +    G +T+ ++         +   G      +     
Sbjct: 405 IMVDRNRITQVLFNFLSNAIKNT-HEGAITLGLEVCGEWLKVYVTDTGCGIAKEKLPLIF 463

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +       +      ++  E            L 
Sbjct: 464 NRFEKLNDFVQGTGLGLPICQSIVERLGGKISVESEVGVGSTFVMTLP 511


>gi|254424565|ref|ZP_05038283.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196192054|gb|EDX87018.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 615

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 61/226 (26%), Gaps = 21/226 (9%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAI 61
            L  +    ++ +   H++ +P+  +  S++LL E         E E++Q  +       
Sbjct: 385 QLDQLKSEFVMTA--SHELRTPLTGMAMSIDLLTETAKTKLSNNEQELLQTAQEDVERLR 442

Query: 62  IRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
             +  +               T      +    IE +          V          + 
Sbjct: 443 DLVNDLLDLSKIESGKLEVDKTTVDPRQLVEKAIELLKIQSEDKQIEVSSQTASNLPKVE 502

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA---RFPEKFTQIV 168
            +  KI   +  +   +L    +    + +        ++  +G         + F + V
Sbjct: 503 VDVNKITWVMTNLIANALRYAKETIEVIAKRHGTWISIAVADDGPGIDPAYQTKIFDKFV 562

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E  +    +       +   +   +  +    H    +  L 
Sbjct: 563 QVKTEKDVGGSGLGLAICKEIIKAHGGTIWVDSTPGHGSTFTFTLP 608


>gi|32472620|ref|NP_865614.1| sensor protein atoS [Rhodopirellula baltica SH 1]
 gi|32443857|emb|CAD73298.1| sensor protein atoS [Rhodopirellula baltica SH 1]
          Length = 410

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 67/233 (28%), Gaps = 26/233 (11%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAI 61
            L    L AL  L + + H+I +P+  I N+  LL           + + LI        
Sbjct: 170 RLKMEKLAALGELAAGVAHEINNPLAGIRNAFALLKRHLPSNVKHYDKLDLIDGEIERIR 229

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKID-------- 110
                M   +  +     +  +    + +      ++   +V+V    E +         
Sbjct: 230 GITHQMFQLYRPSQQKAVVFNVRRCLEELMSLALPMSRKFKVKVELECEALPATKELGVD 289

Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  E  +ILLNL   A  +   G +V + V  + +  +  +   G      +    
Sbjct: 290 EVLLREGELKQILLNLVHNAIQASSPGQEVQLVVTANDDALVLRVVDRGCGI-ANDVIDS 348

Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D    +          +       L    +  +      +        L +
Sbjct: 349 IFDPFFSTKTTTVGQGMGLGLSVTRGLIEAMRGSIDVSSEPNEGTEFCVQLPR 401


>gi|28896392|ref|NP_802742.1| two-component sensor histidine kinase [Streptococcus pyogenes
           SSI-1]
 gi|28811643|dbj|BAC64575.1| putative two-component sensor histidine kinase [Streptococcus
           pyogenes SSI-1]
          Length = 451

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDS-------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +    T                     L   +      +    R     +      + + 
Sbjct: 271 IDNQVTQLAVEMTNFTAFITSILNRFDLVKNQHTGTGKVYEIVRDYPITSVWIEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+T+ ++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKITVRMKTTDTQLIISISDQGLGIPKTDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLA-HENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   ++   +  +         + +L 
Sbjct: 391 ARSRAQGGTGLGLAIAKEIIKQQHHGFIWAKSDYGKGSTFTIVLP 435


>gi|186681893|ref|YP_001865089.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
 gi|186464345|gb|ACC80146.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
          Length = 477

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 68/237 (28%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51
           +A+ +   LS +           S + H++ +P+  +H  L+ +L         + E ++
Sbjct: 235 LAQTLTMLLSRLSQSWKQEREFVSNVSHELRTPLTIVHGYLQSVLRRQNNLTQTQQEALE 294

Query: 52  LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-V 102
                +   I  L+ +           +    S      + ++  + + +     +++  
Sbjct: 295 TAASEAERTIRLLQDLLDLARADSGYLYFQMKSYVLNDLIEEVVMMAKKYSDRIIKIESK 354

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               E         ++LLNL   A         +   +   ++  I  +   G      +
Sbjct: 355 VDRIEVKADYSRLKQVLLNLIDNAIKYSEIDTPIAFKLNQLEDRAIVEVCDRGYGIPLQQ 414

Query: 163 ---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +   +       +    V  L       +  +         +  L 
Sbjct: 415 QARIFERFYRVDESRSHTTGGCGLGLSIVKTLVEGMGGSVSVQSKLGEGSTFTISLP 471


>gi|308272467|emb|CBX29071.1| hypothetical protein N47_J00520 [uncultured Desulfobacterium sp.]
          Length = 479

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 71/233 (30%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----------GIEDE 48
           +  N    L S  + AL    + I H++ +PI  I  + E   +            + ++
Sbjct: 240 LETNQENLLQSRKMAALGTFTAGIAHELNNPINNISLTAETFLDEYSERLDPEGKEMLND 299

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSW 104
           ++  +  ++      L F R        +D    +    ++I++ I         +    
Sbjct: 300 IIAQVERANDIVRNLLDFSRTEESSFSDLDIKDVINSTIKLIKNQIKFSGIKLNIIFSPD 359

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK 163
             +     R   ++ LNL + AH ++P G      +  +S       +   G     PE 
Sbjct: 360 LLQIKGNLRSLQQVFLNLLINAHQAMPNGGSIEIKAYPESPRFIRIDITDTGPGI-PPES 418

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +        +       L   +   +            S  + 
Sbjct: 419 LEKIFEPFYTTKGIGKGVGLGLSVTYSLIKNHGGNIKVTSEAGRGTTFSIFIP 471


>gi|194289105|ref|YP_002005012.1| sensor histidine kinase in two-component regulatory system wtih
           kdpe, regulation of potassium translocation [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222940|emb|CAQ68945.1| sensor histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [Cupriavidus
           taiwanensis LMG 19424]
          Length = 952

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 25/239 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQL 52
           A+    ++ S  L + L + + HD+ +P+ ++    E +   G             +++ 
Sbjct: 701 AQQALLSMESERLRSSLLAAVSHDLRTPLTSLIGMAETMQRSGPALTPPLAETVAAMLEQ 760

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLI----GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            R      +  L   +L      +          +G     + + +   + +    +   
Sbjct: 761 ARRMRTMVVNLLDMAKLQSREVLTNKEWQSVEELVGSSLAAMREALEHHRVIVADLSQVP 820

Query: 109 IDLSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163
           +         ++L NL   A    P G ++ IS    ++E    ++ +G         + 
Sbjct: 821 LIECDAVLVERVLCNLLENASKYTPAGTEIRISSAPVEDEIRIVVEDDGPGVPKGKERQI 880

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE-----IIDDH--NVVLSALLEK 215
           F +   G  ES      +       +   +  R+  E        D          L +
Sbjct: 881 FEKFTRGERESATAGVGLGLAVCEAIVQAHGGRIWVEAAQRPDRPDGQAGARFVVALPR 939


>gi|187251604|ref|YP_001876086.1| integral membrane sensor signal transduction histidine kinase
           [Elusimicrobium minutum Pei191]
 gi|186971764|gb|ACC98749.1| Integral membrane sensor signal transduction histidine kinase
           [Elusimicrobium minutum Pei191]
          Length = 604

 Score =  117 bits (294), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 13/227 (5%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + K     +    L A+  + S I H+I +P+  I NS  L+     +E         +I
Sbjct: 377 LGKATDALVKKERLAAIGEMASIISHEIRNPLAVISNSTHLIRAIVGEENPKLKRQFDII 436

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                 A   ++ +           + + L    + I     + + +++    ++   + 
Sbjct: 437 DSEVRQANRIVEEVLGYARDRKQNITRVDLNSYLKDIVTTHPLPQGIRIVQNYDETHPAV 496

Query: 114 ERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   + + NL   A   +P GG + I  +  K      +   G          +I 
Sbjct: 497 NIDSEEIKQAVRNLITNAFDVMPDGGTLNIGTKAGKKVVCLYVCDEGTGMGEDTLL-RIF 555

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +      +    V      NK ++  E   D        L++
Sbjct: 556 TPFFTTKARGTGLGLAVVKKAVSNNKGKMFVESEPDQGTKFKIYLKR 602


>gi|313149766|ref|ZP_07811959.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313138533|gb|EFR55893.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 501

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           +   +     S  L +   + + H+I +P+ AI     LL  ++  +  E ++       
Sbjct: 266 LNDALRKAQRSDRLKSAFLANMSHEIRTPLNAIVGFSTLLVSEQSDLRPEDIEEYAALIE 325

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------- 104
                L F+         ++S     ++     + +  D                     
Sbjct: 326 KNGQLLMFLISDILDLSKIESNTMEFNVSVFSLNKMFADIARMQRLNVKPGVELIADLPA 385

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
                        +++ NL   A     RG       +  + +    ++  G        
Sbjct: 386 EDVSITADPVRLEQVVNNLINNAIKFTSRGSIRIGYRRRGEKDVELFVEDTGKGMSEEVI 445

Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G+  S +    +       +       +  E            L 
Sbjct: 446 AHVFERFYKGD--SFVQGTGLGLAICKTIVEHFGGEIRAESEVGEGARFEVCLP 497


>gi|228964975|ref|ZP_04126077.1| hypothetical protein bthur0004_18170 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228794716|gb|EEM42220.1| hypothetical protein bthur0004_18170 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 235

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 1   MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 57

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 58  TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 117

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ +      +  +G      +    
Sbjct: 118 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 177

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 178 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEINVESEEGKGTEFIVRIP 230


>gi|229154087|ref|ZP_04282212.1| hypothetical protein bcere0010_2900 [Bacillus cereus ATCC 4342]
 gi|228629367|gb|EEK86069.1| hypothetical protein bcere0010_2900 [Bacillus cereus ATCC 4342]
          Length = 672

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQL 52
           +     LS+++L+  + + I H+I +P+  +   L+LL E    ++           +  
Sbjct: 446 EQELKRLSNIELIGQMAAGISHEIRNPMTTVRGFLQLLKEENNYEKHNNYFNLMVEELDR 505

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                   +      +           +  +  + ++         +V  +   E +   
Sbjct: 506 ANSIITEFLSIGNTEKSDLQMLDVNSIIHDIIPLIKIDTHNQNKYIQVDTNNVPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS         + +++  GN    PE   ++    
Sbjct: 566 NEIRQLLMNLYRNGLEAMSTGKTLTISTYKEGQNCVVLAVRDEGNGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|158426278|ref|YP_001527570.1| sensor protein fixL [Azorhizobium caulinodans ORS 571]
 gi|120206|sp|P26489|FIXL_AZOC5 RecName: Full=Sensor protein fixL
 gi|38705|emb|CAA39979.1| fixL [Azorhizobium caulinodans ORS 571]
 gi|158333167|dbj|BAF90652.1| sensor protein fixL [Azorhizobium caulinodans ORS 571]
          Length = 504

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%)

Query: 2   AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED 47
            +N    L  +         L AL  + S + H++  P+ AI N +     LLD+   + 
Sbjct: 253 RQNTEARLQELQAELVHISRLTALGEMASTLAHELNQPLSAIANYIKGSRRLLDDGDPKR 312

Query: 48  EVM---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVD 97
             M         +    +         F+               + +   +         
Sbjct: 313 IPMLQGALDKAAEQALRAGQIIRRLRDFVSRGETERRVESLSKLIEEASALALVGAKEHG 372

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSL 151
            +V+         +  ++ ++   L  +   +L      +             +    S+
Sbjct: 373 IQVRYQIDTSCDLVLADKVQVQQVLLNLMRNALEAMMDASRRQLLVQTTPAEDDMVTVSV 432

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              G+     E   Q+    V +      +       +   +  R+  E       +   
Sbjct: 433 CDTGHGI-SDEMRAQLFTPFVTTKAQGMGVGLSISRTIIEAHGGRIWAEPNAGGGTIFRF 491

Query: 212 LL 213
            L
Sbjct: 492 TL 493


>gi|323342106|ref|ZP_08082339.1| alkaline phosphatase synthesis sensor protein PhoR [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322464531|gb|EFY09724.1| alkaline phosphatase synthesis sensor protein PhoR [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 403

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 22/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +++   L    +     +   H++ +PI +I   +E+L     D+    +  ++ I   +
Sbjct: 170 QDVTRILEGEKMQKRFIADASHELRTPIASIKGMVEILNRPEFDDTETLEAFLKQIEKEN 229

Query: 58  MSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 ++ +            L            GL    +       +   +      
Sbjct: 230 NRLDHIVEDLLLQSRLKSNTVYLEKTVFNLKQFFDGLIYERRQELHQANIKVVLNCPSNI 289

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                    +++ LNLF  A       G++ I     +         NG        P  
Sbjct: 290 TVYADQFRLSQVFLNLFNNAINYAEN-GRIKIQCDTDEEYVHIDFMDNGKGMEPDLIPHI 348

Query: 164 FTQIVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           F +   G  +         +       +   +   +      D     +  L
Sbjct: 349 FERFYRGEKDRSRENGGSGLGLAISKSIVEAHGGTINVTSKIDKGTTFTIKL 400


>gi|167035685|ref|YP_001670916.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
 gi|166862173|gb|ABZ00581.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
          Length = 991

 Score =  117 bits (294), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 72/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          +  
Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 797

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++   +  S      + F      +          +       +  +      V     
Sbjct: 798 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +  A++L+NL   A  + P G  V +  + S++     ++  G+     
Sbjct: 858 CDPDHWAEGDPQRLAQVLINLLSNARDASPAGSAVRVRSETSEHTVDLIVEDEGSGIPKN 917

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 918 -IQDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976


>gi|302338734|ref|YP_003803940.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635919|gb|ADK81346.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 696

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 72/224 (32%), Gaps = 12/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +     +  M+ +  L   + HD+ +   AI  +L++       +     E +     + 
Sbjct: 471 ERQVMKMQRMESLGFLAGSVAHDLNNIFTAIEGNLDIARHTLPNDEEEVKEALDAALYAY 530

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------WTGEKIDL 111
                 ++ +         + + I + D+ +  +        V+ +      +       
Sbjct: 531 EKGKRLVRTVLQHTRVKEDMQTKINIRDVLEAADQLAFRASTVKRTTKAPSGFDPFLAGY 590

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                ++ +NLF+ A  ++   G++ I +   ++    S+  +G          QI D  
Sbjct: 591 PDLLFQLFMNLFINARQAMNNMGELLIELSGDEDTITISVCDDGPGVPERYA-DQIFDKA 649

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   +    V  +   +K  +L +            L +
Sbjct: 650 FSTREEGTGLGLSIVRSIVERHKGTILLDKRYTRGAKFIVTLPR 693


>gi|289937550|ref|YP_003482152.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533241|gb|ADD07590.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 639

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 50/230 (21%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQ 51
              +  +   ++  A   S   HD+  P+  + + L+L++               +  + 
Sbjct: 409 EHKLEESNERLEQFAYAAS---HDLQEPLRMVSSYLQLIESRYANELGDDGEEFLEFAID 465

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEK 108
                       L++ R+           +          +       +  V        
Sbjct: 466 GADRMREMIDALLEYSRVDTQGDPLEPVDLDRLLEDVQTDLQIQLEESNAIVTTDDLPWI 525

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KF 164
                +  ++  NL   A      G                 S+   G      +    F
Sbjct: 526 KGDDSQLRQVFQNLLSNAIMYSGDGPPEIHVEATYQGRMWEVSVHDEGIGIDPEQQDRVF 585

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 + +       I       +   +   +  E         S  L 
Sbjct: 586 EVFHRLHGQEEYSGTGIGLALCRRIIERHGGEIWVESEPGEGSTFSFTLP 635


>gi|218778402|ref|YP_002429720.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759786|gb|ACL02252.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 847

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 60/240 (25%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +     +  M+ +  L   + HD  + + A++  +EL    L         ++    +  
Sbjct: 458 REQNRQMQKMEALGRLTGGVAHDFNNLLQAMNGFVELAGMDLPRDHRSRPFLEQTLTAGR 517

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------L 111
            A   ++ + L           + L      +   +       +       +        
Sbjct: 518 RAANLVQQLLLFSRSKDMQFKYMDLNTAVDDLLKMVGRIIGTDIQVQWRPWNSSLTIHAD 577

Query: 112 SRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
                ++L+NL + A  ++P                      S        +  ++  G 
Sbjct: 578 PGMMDQVLMNLCVNARDAMPNGGVLTIAASIMEADAPFCANHSWAKQGRYAVLKVRDTGM 637

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +  +     +       +  ++   +            +  L 
Sbjct: 638 GMDDVTL-DRIFEPFFTTKEEGRGTGLGLATAYGVVQQHGGIISVSSELGRGSEFAIFLP 696


>gi|149183788|ref|ZP_01862190.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
 gi|148848506|gb|EDL62754.1| two-component hybrid sensor and regulator [Bacillus sp. SG-1]
          Length = 941

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 19/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           ++      +  +   L S + H++ +P+ ++    ELL     +   + + +  I   + 
Sbjct: 574 RDFTKEYEADQMKNELVSTVSHELRTPLASVLGYTELLINRELKPERQKKYLNTIYQEAN 633

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
              + +              +     +    +   +    ++  S    +     +    
Sbjct: 634 RLTVLINDFLDVQRMESGKQTYEKKYESLTPLLKEVIEGIKINTSIHDIQFVSDADDDMV 693

Query: 117 --------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++  NL   A    P GG +TI +  +  E   S+   G             
Sbjct: 694 LGDRDKLLQVFQNLIQNAVKYSPAGGNITIKLHSAPKELHVSIIDEGLGVPEEAMPNLFT 753

Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       I    +       +   ++  ++           + +L K
Sbjct: 754 KFFRVDNSDRRKIGGTGLGLAIAKEIIKAHEGDIVLSSKLGQGSTFTVILPK 805


>gi|134292639|ref|YP_001116375.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135796|gb|ABO56910.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1129

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 56/237 (23%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    +   + + H+I +P+ AI  +LEL+    +     + ++    S+
Sbjct: 511 LKEARTAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMARAQLPLAERRRLQTVMSSS 570

Query: 61  IIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIE-----DFIAVDKRVQVSW 104
              L                        D    L ++  +         + ++  +    
Sbjct: 571 DALLHTINDVLDLSKAESNQMALEAVPFDLRAVLHEVAAIFRALADAKHLRLECVIAAGL 630

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPE 162
               +       +I+ NL   A      G                   ++  G       
Sbjct: 631 GDGYVGDPARVRQIVSNLVSNAIKFTEHGRVTVEALPAAVPGRGVEIVVRDTGIGIEPDS 690

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             T                    +       LA      +  E       V +A L 
Sbjct: 691 MPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMGGDVTVESRPGAGAVFTASLP 747


>gi|317122192|ref|YP_004102195.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
 gi|315592172|gb|ADU51468.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter marianensis DSM 12885]
          Length = 490

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 56/241 (23%), Gaps = 26/241 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQ 51
           MA+ I   +  +     L   + + I H++ +P+  I    E L +              
Sbjct: 234 MAERIEALVEELRRSQTLRRSMLATISHELRTPVTVIRGLGEALRDGLVEAGPGAARHAG 293

Query: 52  LIRLSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVD 97
            I   +      +  +                       ++      +            
Sbjct: 294 QIVAEAERLGRLIDDLFQLAQIETGQLDLRFGRFAAGPWLEERATALETLVRERGAHWAA 353

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +                 A++L NL   A      GG VT++           +  +G  
Sbjct: 354 RIDPSLGGVWLEADPHRLAQVLGNLVDNAARHAGPGGHVTLTAAAVAGGVRVEVADDGPG 413

Query: 158 ARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    F     G   +      +    V  L   +  R+               L 
Sbjct: 414 IDPADLPRVFEPFYRGREAARSRGAGLGLSIVRALVEAHGGRVGVASAPGRGARFWFFLP 473

Query: 215 K 215
           +
Sbjct: 474 R 474


>gi|229114251|ref|ZP_04243672.1| hypothetical protein bcere0017_5530 [Bacillus cereus Rock1-3]
 gi|228669271|gb|EEL24692.1| hypothetical protein bcere0017_5530 [Bacillus cereus Rock1-3]
          Length = 463

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 66/219 (30%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVIV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ +       +++  G      +                 +
Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   ++     D+       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNIIVTSEVDYGSCFIISLP 454


>gi|254507803|ref|ZP_05119934.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           16]
 gi|219549328|gb|EED26322.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           16]
          Length = 603

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 65/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIE-DEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +     L  E     D+ +  
Sbjct: 358 LRQTQNELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLTKEKFDRVDDNLAR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVS- 103
           I   +         ++     + S D  +       +              V   + +  
Sbjct: 418 ISNLTDRMAKISNQLKSFTRKSDSQDVQLLELAPVIISAKELVTPQIKSHQVTFNINIEG 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161
            + +    + +  ++L+NL   A  ++    +  ++     +       +  +G      
Sbjct: 478 LSAKVDINAIQIEQVLINLITNAAQAVEASTERIVNLSYHQNDAVVSVFIDDSGPGIDTT 537

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                + +    +  +   +       +       L            +  L 
Sbjct: 538 TA-AHLFEPFFTTKKNGLGLGLSISQQIVQTMNGELSVGQSPLGGARFTLKLP 589


>gi|205375564|ref|ZP_03228352.1| two-component sensor histidine kinase [Bacillus coahuilensis m4-4]
          Length = 606

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 63/218 (28%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  + + LE L E  ++      + +++ +  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTTMRSYLEALAEGAMDDPTIAPQFLKVTQDETERMIRLVNDLLQLSK 438

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRERAKILLN 121
                 Y               +    ++  + V                  +  +++ N
Sbjct: 439 MDSRDYYFNKEWIPFIRFFDGIIDRFEMSKAQHVTFKRELPDEQILVEIDPDKLTQVIDN 498

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A    P GG VT  V   +   + S+K  G           F +    +      +
Sbjct: 499 IISNALKYSPDGGTVTFGVDIQEEFIVISIKDQGMGIPKDNLDKIFERFYRVDKARSRQM 558

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       + + +   +  +  +     +   L 
Sbjct: 559 GGTGLGLAIAKEMIYTHGGDIWADSKEGEGTTIFFTLP 596


>gi|262053232|ref|ZP_06025383.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 930918-3]
 gi|259158871|gb|EEW43964.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 930918-3]
          Length = 588

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 61/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 429

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++       D  + +++                ++L NL 
Sbjct: 430 AEGLSVNKEVQPIAALLDKMKIKYRQQDDDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 489

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 490 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 549

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 550 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586


>gi|229133478|ref|ZP_04262305.1| hypothetical protein bcere0014_23970 [Bacillus cereus BDRD-ST196]
 gi|228649878|gb|EEL05886.1| hypothetical protein bcere0014_23970 [Bacillus cereus BDRD-ST196]
          Length = 364

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 76/223 (34%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 133 RSKLIKVEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNITQQSKDEYIEHILEELN 192

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLS 112
           R  ++           +               I  ++         +   ++    I  +
Sbjct: 193 RAQAIIDDYLTFAKPASEKLDHISVEHELNRVINMMLPFCNMNTINITKEFSEGTIIGNT 252

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 253 QHFHQCFLNLIKNSIEAMPCGGNLIISATVSNNKVIIRIQDSGVGM-SQEQINRFGEPYF 311

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    I +    L+    K
Sbjct: 312 STKTKGTGLGTMVAVKIIETMRGSLKIRSIVNKGTTLTITFPK 354


>gi|256828818|ref|YP_003157546.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577994|gb|ACU89130.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 450

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 69/218 (31%), Gaps = 14/218 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVMQLIRLS 56
               L AL  L + + H+I +P+ +I                  +   +    +  +   
Sbjct: 228 RQERLAALGTLAAGVAHEIRNPLSSIKGFATYFGAKFKAGTQDRELAEVMIGEVDRLNRV 287

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
               +       L    T   D +     + +       +  +++++             
Sbjct: 288 VTELLELTHPSELRLAPTVVSDLVQHALKLVEGDCRSKGIAVQLRIAELEALPLDPDRML 347

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           +ILLNLF+ A  ++P+GG +T+S Q  K+     +   G+     +   +I D    +  
Sbjct: 348 QILLNLFLNAIQAMPQGGTLTVSAQRVKDRLELRVADTGHGIPAQDL-DRIFDPYFTTKN 406

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +  ++           +   L 
Sbjct: 407 QGTGLGLATVRTMMTAHGGQVRVTSEPGQGTQVILDLP 444


>gi|221210646|ref|ZP_03583626.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD1]
 gi|221169602|gb|EEE02069.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD1]
          Length = 1017

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 63/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +   + + D       + L + + H+I +P+  I  +LELL+   ++      ++ 
Sbjct: 488 LVQKLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSVLDLPQRSRVQT 546

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              +A   L+ +     +T      + +  IE      IA +                  
Sbjct: 547 LRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLFCE 606

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155
           +  S +          A++  NL   A      G                    +++  G
Sbjct: 607 IAASASQRMRGDPTRLAQVFGNLLSNAIKFTAHGHVTARVRAVRGECGTAELAIAIEDTG 666

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +        +              +       L      R+            +
Sbjct: 667 IGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFT 726

Query: 211 ALLE 214
             L 
Sbjct: 727 VRLP 730


>gi|167464056|ref|ZP_02329145.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           larvae subsp. larvae BRL-230010]
 gi|322384577|ref|ZP_08058257.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321150632|gb|EFX44109.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 586

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57
            K     L   D+   V  L + + H+I +P+ ++   L+L+    G E+  M++++   
Sbjct: 325 QKRTEELLRKSDMLSAVGQLAAGVAHEIRNPLTSLKGFLQLIKPSTGKENYYMEIMQDEL 384

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------I 109
                 +           S   L  +  I     D +    R+                 
Sbjct: 385 KRIEHIVDEFLFVAKPKVSQFELKSMSAIVSSTVDLLQPQARLNNVEIRTNLNSRLPLVY 444

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQI 167
               +  ++ +N+   A  ++  GG + I                  G     PE+  ++
Sbjct: 445 CNQHQMKQVFINIIKNAMEAMIDGGILHIETDYISALQMVRIRFNDEGCGI-PPERIPKL 503

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +   +   +      D    +  LL 
Sbjct: 504 AEPFYSTKEKGTGLGLMVTYKIIETHSGDIQFRSRPDRGTTVDILLP 550


>gi|119512212|ref|ZP_01631301.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119463110|gb|EAW44058.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 506

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 67/236 (28%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIR 54
           + + +        L +L  S + HD  +P+  I  ++EL++  G           ++ I+
Sbjct: 259 LERALNQERELNHLKSLFISTVSHDFRNPLTVIQTAVELIEIQGDSLTATKKTTYLKRIK 318

Query: 55  LSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +  S    ++ +                          +     ++ +          S
Sbjct: 319 GAVESMKQLMEDVLFMGRSDVGKVECHPDIINLEQLCREVIAEFSLVTNGGHEIIFTCHS 378

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP 161
              + +   +    IL+NL   A    P+   + +  +    +   I  ++  G      
Sbjct: 379 KCTDALIDEKLLNYILINLLSNAVKYSPQNQNIHVDLNCDYREQIVILRVQDQGIGIPEV 438

Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F      +   +I    +    V      ++  +            + +L 
Sbjct: 439 DQKRLFESFYRASNVQSIQGTGLGLLIVKRCVEAHQGEISFTSQVGVGTTFTVILP 494


>gi|326405972|gb|ADZ63043.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis CV56]
          Length = 480

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67
           L  S + H++ +P+ ++   LE L++  IED+          +             L   
Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLS 289

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112
           R+          +I L        + +                   R            +
Sbjct: 290 RMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDT 349

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166
            + A+++ N+   A    P+GG +TISV+  +++ + S+   G            ++F +
Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYR 409

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           + + +  S +    +    V  +   +   +      +      S  L 
Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|281490938|ref|YP_003352918.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
 gi|281374696|gb|ADA64216.1| Two-component sensor histidine kinase [Lactococcus lactis subsp.
           lactis KF147]
          Length = 480

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67
           L  S + H++ +P+ ++   LE L++  IED+          +             L   
Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLS 289

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112
           R+          +I L        + +                   R            +
Sbjct: 290 RMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDT 349

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166
            + A+++ N+   A    P+GG +TISV+  +++ + S+   G            ++F +
Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYR 409

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           + + +  S +    +    V  +   +   +      +      S  L 
Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|228920690|ref|ZP_04084033.1| hypothetical protein bthur0011_17040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228838991|gb|EEM84289.1| hypothetical protein bthur0011_17040 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 346

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 112 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 168

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 169 TTRLSKLSQNLLKLTLLESDEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 228

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 229 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVLIRDSGIGISEEQKQHI 288

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 289 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 341


>gi|15672378|ref|NP_266552.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723269|gb|AAK04494.1|AE006276_9 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 480

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67
           L  S + H++ +P+ ++   LE L++  IED+          +             L   
Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIEDKETASSFINVSLTETNRMIRMISDLLTLS 289

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112
           R+          +I L        + +                   R            +
Sbjct: 290 RMDQDRIVLNKEMINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSEQPIWVEIDT 349

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166
            + A+++ N+   A    P+GG +TISV+  +++ + S+   G            ++F +
Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITISVEKRESDVLISISDQGMGIPKSDLLKIFDRFYR 409

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           + + +  S +    +    V  +   +   +      +      S  L 
Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|163847621|ref|YP_001635665.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525477|ref|YP_002569948.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668910|gb|ABY35276.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449356|gb|ACM53622.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 523

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 56/231 (24%), Gaps = 23/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAII 62
              +        + S I H++ +P+  I    E +     +    +  + +++ S  A  
Sbjct: 285 AQKMEEERQNTFI-SVISHELRTPVSIIKGFAETMLRPDGQFTVEQYREALQVISEEADR 343

Query: 63  RLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             +               +RL          +  +              +          
Sbjct: 344 LARQIQDLLDVSRIAAGGLRLERSDVALHLLVSDVVRRFAAQVGERIEFEIRVPDDLPPV 403

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++L NL   A    P GG + I  +   +  I  +   G      E    F 
Sbjct: 404 YADYERMRQVLTNLIENAVKYSPNGGVIRIGARAEGDMAIVYVSDQGIGIPPEEQDLIFE 463

Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +           +  +    +   +  R+  E            + 
Sbjct: 464 RFYRVDTRLRRDQPGSGLGLFITRAIVEAHGGRIWVESQVGRGSRFFFTIP 514


>gi|294498030|ref|YP_003561730.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294347967|gb|ADE68296.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 527

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 68/222 (30%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
            +        + L   + + I H+I +P+ +++  ++L+ ++         ++       
Sbjct: 299 TEKFLRQTDKLSLAGEMAAGIAHEIRNPLTSLNGFIQLIHEDSSRYHSYTTIMLSELNRI 358

Query: 61  IIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +            +      S      +   E        V K    +        +
Sbjct: 359 NSIVGEFLLLAKPHDTVMKKQAFSTILNDVILLYESECILKNVVVKTQVEAPHTYICCDA 418

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++L+NL   A  ++P GG++ ++V     +    +K  G         T I     
Sbjct: 419 NQIKQVLINLLKNALEAMPSGGEIHLNVTQHTKDLTIFIKDTGVGI-PSHLLTHIQKPFF 477

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    +  + +++K     +        ++  + 
Sbjct: 478 TTKPSGTGLGLVVIKNILYQHKGTFEIKSTVGKGTSVTLTIP 519


>gi|228927050|ref|ZP_04090116.1| hypothetical protein bthur0010_17660 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229121536|ref|ZP_04250763.1| hypothetical protein bcere0016_18400 [Bacillus cereus 95/8201]
 gi|228662000|gb|EEL17613.1| hypothetical protein bcere0016_18400 [Bacillus cereus 95/8201]
 gi|228832785|gb|EEM78356.1| hypothetical protein bthur0010_17660 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 293

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 59  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++ +G      +    
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 235

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 236 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|225872588|ref|YP_002754043.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792000|gb|ACO32090.1| Sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 477

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 60/219 (27%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ +I   +E L +   +      E + +I  ++       + +     
Sbjct: 257 FVANVSHELRTPLTSISGYVETLLDTTPDLPPHVQEFLGIILKNANRMNRLTEDLLALAN 316

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
                   +   + +   L D  + +   +     +          +  +     ++  N
Sbjct: 317 VESGEYQLHRQPIAASALLEDTIEGLAGMLVDSGFLLKQRETTNTKVLVDIDAITQVFGN 376

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A      G  VT+  +D      F ++  G      E   +I +            
Sbjct: 377 LIENAMKYGRTGQSVTVGARDCDGCVEFYVQDYGPGI-AQEHQARIFERFYRVDKARSRE 435

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   ++  +  E            L 
Sbjct: 436 SGGTGLGLAIARHIVLAHEGTIHVESELGSGATFIVRLP 474


>gi|253699328|ref|YP_003020517.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774178|gb|ACT16759.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 770

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 62/242 (25%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--------IR 54
           +        M+ +A L   I HD  + + +I    E+  +    +  ++           
Sbjct: 382 ERQLRQAQRMEAIATLAGGIAHDFNNNLASIITCTEMARDDVPPESPLRELLDVVLKSSY 441

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---KIDL 111
                    L F          V     + +   ++   ++    V+     +    +  
Sbjct: 442 RGRKLVKQILTFCCQGEQERQPVQIDPIVTECLNLMRASLSSSISVRTEMGEDLGLIMAD 501

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI----------------SVQDSKNENIFSLKING 155
             +  +I++NL   A  ++   G +                      S      ++K  G
Sbjct: 502 PTQIHQIIMNLVTNAAHAMRHKGGMLDVAVENVGLDTAAVSGSPDLPSGRYLKLTVKDTG 561

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +         +I D    +    +   +    V  +   +   +               L
Sbjct: 562 HGMDQK-TMERIFDPFFTTKSHSEGTGLGLSVVHGIVRNHGGAISVSSKPGGGATFEVYL 620

Query: 214 EK 215
            +
Sbjct: 621 PR 622


>gi|218780097|ref|YP_002431415.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218761481|gb|ACL03947.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 407

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 74/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIH---NSLELL--DEVGIEDEVMQL 52
           + + +   ++ +  L +L  L + + H+I +P+  I      L+LL   +   E      
Sbjct: 137 LREALEKQMATAERLASLGTLAAGVAHEINNPLAIISEAAGYLQLLLEKDECKEMPFHDR 196

Query: 53  IR-----------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                         +  + +  L F          ++    + ++  +     +      
Sbjct: 197 FEKAIGKIEKSVKRARRTTMQLLGFAGQPDAVYREIELDDLVEEVILLAAGQASAAGVTV 256

Query: 102 VSWTGEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           V                  ++L+NL     A+  RGG+V++S   S +     +K  G+ 
Sbjct: 257 VKEKNPNSAALWTDPHRLRQVLINLVSNGIAACGRGGRVSLSFDSSNDWATIQVKDTGHG 316

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               E   +I +    +        +  +  + +       +  +       +    + +
Sbjct: 317 I-PKENLERIFEPFFTTKPPGKGTGLGLFVSLDIIKRLGGDMQVKSKVGKGTIFQVSVPR 375


>gi|126699345|ref|YP_001088242.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|115250782|emb|CAJ68606.1| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 664

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
               L    ++++  L S + H+I +P+G I N+  LL +       ++ ++ I  +   
Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLS 112
           A   +  +      +      I + +  + I               ++            
Sbjct: 495 ASNIITNLLNFARISDDNLEHINIKNFIENIVKLQYKMLQLKNVEIKIDCEHNLICYING 554

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                + +NL   +  ++ + GK+ I   +  +      K NG      +    I +   
Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNHCLFIDFKDNGEGI-KEDVLKDIFNPFY 613

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +  Y       +N   +  E            + 
Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657


>gi|148656185|ref|YP_001276390.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148568295|gb|ABQ90440.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 504

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 18/213 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRL-------- 69
           + + H++ +P+ A+  +LE+L      D  +  + +          ++ +          
Sbjct: 265 ADVSHELRTPLTAMQGNLEVLARGAARDPQLLNESLDDMRREVARLIRMVNDLLLLARSD 324

Query: 70  --AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
                    V+    L     ++      V  R+                + LLNL + A
Sbjct: 325 AGIQIRRDPVELDTLLLETYRELRLLAGQVHLRIGEEDQAVVTGDRDRIKQALLNLGVNA 384

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI--DSHDI 181
               P GG+VT+S+       + S+   G      +    F +    +   +       +
Sbjct: 385 IQHTPPGGEVTLSLTVRDGYAVLSVADTGYGIAPQDLPHIFDRFYRADRSRSRNGGGAGL 444

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +   +  ++L         V + LL 
Sbjct: 445 GLSIVRSVVEAHSGQVLVTSEPGRGSVFTMLLP 477


>gi|89891760|ref|ZP_01203263.1| histidine kinase/response regulator [Flavobacteria bacterium BBFL7]
 gi|89516095|gb|EAS18759.1| histidine kinase/response regulator [Flavobacteria bacterium BBFL7]
          Length = 364

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 15/227 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIR 54
           K    +   + ++  + + I H++ +P+  I    ELL +            D++++   
Sbjct: 138 KRQMEHADRLSILGEITAGIAHELNTPLTNILGFAELLKDAFIDNTLVTEDLDKIIKNAM 197

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110
            S       + F          V+ +  + +   +++      +   +            
Sbjct: 198 FSREVVKKLMFFACEMPQEMQRVNIVPSIKNSLALLDASFKKAQVKYIVKIEEEELFLKA 257

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  +I+ NL + A    P  G VTI    + +  I  +   G      E   ++   
Sbjct: 258 DIIQLTQIIFNLTINAIYFTPVNGVVTIEALQTTDHVILRISDQGIGL-TKEAQKKVFQP 316

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    D   +    V  +   +K  +            +  L K
Sbjct: 317 FFTTKPIGDGSGLGLSVVHGIVASHKGTISARNNKFKGATFTVKLPK 363


>gi|89070245|ref|ZP_01157569.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus
           HTCC2516]
 gi|89044165|gb|EAR50323.1| PAS/PAC Sensor Hybrid Histidine Kinase [Oceanicola granulosus
           HTCC2516]
          Length = 1053

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-------------LDEVGIEDEV 49
           ++I        L +   + + H++ +P+ ++  +L+L             L  + I    
Sbjct: 691 QDISERREIERLKSEFVATVSHELRTPLTSVKGALDLVVGAMADKLPKSSLRLLDIAQSN 750

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +       +   K       +    +S   L D        IAV + V + W  ++ 
Sbjct: 751 TDRLIYLVNDILDLEKISAGQIDFHIQPESANELLDASVKQTRPIAVQQDVHLVWRPQEP 810

Query: 110 DLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           D           ++LLNL   A      GG+V +  +    E +F +K  G       + 
Sbjct: 811 DRMVLADAGRLNQVLLNLISNACKFSHAGGRVEVWFEVRGAEVMFFVKDEGVGISATHRN 870

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +              +       L      R+  E              
Sbjct: 871 SIFKPFSQVDSSDTREKGGTGLGLNICKELVERMNGRIDFESTLGEGTTFRFTCP 925


>gi|206890887|ref|YP_002248586.1| sensory Transduction Protein Kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742825|gb|ACI21882.1| sensory Transduction Protein Kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 489

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 65/253 (25%), Gaps = 38/253 (15%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQL 52
           +       + +  L +L  L S I H++ +P+  I  S ++L E   + ++      +Q 
Sbjct: 233 LESKQKQLIQAEKLSSLGTLLSGIAHELNNPLSNISTSCQILIEEIEDSDMEYKKELLQA 292

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTG 106
           I   +  A   ++ +             I    +       I  +        V +    
Sbjct: 293 IESQTERAKNIIRTVLDFSRRKELTKENIPANKLIDDTILLIKGEIPTKVKLSVDIEDNL 352

Query: 107 EKIDLSRERAKILLNLFMVAHASL------------------------PRGGKVTISVQD 142
                 +   ++L+N+   A  +                            GK    +  
Sbjct: 353 SIYADKQRIQQVLINIIKNAIQASGEEGKVSIKAYSYSQEAFDRYFILKEEGKCIGEMPC 412

Query: 143 SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII 202
           +K      +K  G                         +  +    L  ++   +  +  
Sbjct: 413 NKEFICIEIKDTGPGIDTANLLRIFEPFFTTKENKGSGLGLFIAQELIKDHNGCICVDST 472

Query: 203 DDHNVVLSALLEK 215
                    +L +
Sbjct: 473 LGKGTTFIIMLPR 485


>gi|116511253|ref|YP_808469.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116106907|gb|ABJ72047.1| PAS/PAC sensor signal transduction histidine kinase [Lactococcus
           lactis subsp. cremoris SK11]
          Length = 475

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 73/229 (31%), Gaps = 31/229 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67
           L  S + H++ +P+ ++   LE L++  I+D+          +             L   
Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIDDKETASSFIGVSLTETNRMIRMISDLLTLS 289

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLS 112
           R+          +I L        + +                   R            +
Sbjct: 290 RMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDT 349

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166
            + A+++ N+   A    P+GG +TIS++  + + + S+K  G            ++F +
Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITISIETRERDVLISIKDEGMGIPKSDLLKIFDRFYR 409

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           + + +  S +    +    V  +   +   +      +      S  L 
Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|332982065|ref|YP_004463506.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332699743|gb|AEE96684.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 479

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 75/230 (32%), Gaps = 20/230 (8%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
            +   L +++ +     S + H++ SP+ +I   ++ + +       + + + ++   + 
Sbjct: 246 KMAEALENLEDMRRGFVSSVSHELKSPLTSIRGFVQGILDGTIPTEEQTQYLTIVLEETD 305

Query: 59  SAIIR--------LKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
                                    + D    +  +  +  +     +  VQ+ +  ++ 
Sbjct: 306 RLNKIIKELLELSRMESSQFQLAMSNFDVNELIRRVLLKQEKRIEQKELDVQIDFEQDRC 365

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  ++ +I   L      A    P  G++ +S +   N+   S+  +G        P  
Sbjct: 366 MVEADKDRIEEVLINLIDNAIKFTPEKGRLIVSTRVEGNKVYISVSDSGIGISEEDMPHI 425

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           + +    +      S  +    V  +  +++  +  + I       +  L
Sbjct: 426 WERFYTADKSRASGSTGLGLSIVKRIIEQHRQSIWVKSIPGKGTTFTFTL 475


>gi|303246771|ref|ZP_07333048.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302491788|gb|EFL51668.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 482

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
            + +   L     L  +  + + I H+I +P+G I ++ ELL       +    +L+   
Sbjct: 248 REQLERELQQQEKLAGMGRMVAGIAHEIRNPLGIIRSTAELLLKRGKDADSVNAKLLSAI 307

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
              +    K +     Y           D+  + +  +   +                  
Sbjct: 308 FDESKRLSKTVGDFLDYARPKSPRQERVDLAIICDQALTFLEAKCEELGVAVSRDYAPGL 367

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQD------SKNENIFSLKINGNLARF 160
                     + + N+   A  ++    +             S+   + S+  +G     
Sbjct: 368 FVSGDKDLLYRAVYNVLSNALDAMAEDKEKARPPAIAVTATASEEAVVLSVTDSGPG-FC 426

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   +++D    +      +    V  +   +   L  +   +    ++    
Sbjct: 427 PENKDRLLDPFFTTKDAGTGLGLAIVRTIVESHNANLTLDNAPESGARVTMTFP 480


>gi|298529315|ref|ZP_07016718.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510751|gb|EFI34654.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 806

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K      ++  +     + + H+I +P+  I   L+LL E  ++ E  + + L   S+
Sbjct: 422 LVKARQEAEAASRVKTEFLANMSHEIRTPLNGIAGMLQLLKETSLDMEQKEYVDLGIKSS 481

Query: 61  IIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
               + +                       + L      +      +K + +    ++  
Sbjct: 482 HRLTRLLSDILDLSRIEAGHMTIHQEEFDPLELCSSVNELFAVTTRNKHLSLECIFQEGF 541

Query: 111 LSR------ERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
            SR         +IL NL   A         +      +  D++ +   +++  G     
Sbjct: 542 PSRLVGDEARIQQILFNLVGNALKFTEKGGVQVSWSLYAGDDTEQQVRITVQDTGIGM-E 600

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++                   +    V  L       +  + +          L 
Sbjct: 601 QEVLQELFKPFVQAENSYTRKYQGAGLGLSIVKRLVELMHGNISVKSVPGQGSTFYVDLP 660


>gi|116622005|ref|YP_824161.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116225167|gb|ABJ83876.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 411

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS- 57
            ++    L++  L +L  L   + HD  + +G+I  + ELL  ++  +    + I   + 
Sbjct: 28  RRDREQGLAAQKLESLGVLAGGVAHDFNNLLGSILANSELLLADLPADAPAREGIDRINA 87

Query: 58  ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
                       + F          V     + ++ ++++  I+    ++V         
Sbjct: 88  VAVRAAEIVRELMTFAGHENPIFEPVSISSLVREMLELLKVSISKLAVIRVDLADGLPAV 147

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKI 153
           +  + +  ++++NL   A  +L +   V     D                       +  
Sbjct: 148 MANASQIRQVVMNLITNASEALGKAHGVISVSSDMRRVLRDDADTGELAEGEYVRLRVSD 207

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            G      E   +I D    +      +    V  +   ++  +              LL
Sbjct: 208 TGCGM-TKEIQDRIFDPFFSTKFSGRGLGLAAVQGIVRSHRGAIQLTSAPGEGTCFEVLL 266

Query: 214 E 214
            
Sbjct: 267 P 267


>gi|260899517|ref|ZP_05907912.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037]
 gi|308107606|gb|EFO45146.1| sensor protein TorS [Vibrio parahaemolyticus AQ4037]
          Length = 573

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N     S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 44  ARNEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLMDSGLNPIQKRYAEIINRSGK 101

Query: 62  IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+               L  + +     +              ++   +
Sbjct: 102 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 161

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A      G          + +++ +F +   G      ++
Sbjct: 162 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 221

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T              I    +       +       L  +  +         + 
Sbjct: 222 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 276


>gi|163746891|ref|ZP_02154248.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161380005|gb|EDQ04417.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 502

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           +       ++S    +   S + H++ +P+ +I  SLE+L            + +   + 
Sbjct: 252 LKHAQIRAMASDKSKSEFISTVSHELRTPLTSIKGSLEMLKSGKIIDLSGAAERLVGMAA 311

Query: 59  SAIIRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKRVQV 102
                L  +         +D                    +  ++    +         V
Sbjct: 312 KNANILNLLVNDLLDFERIDTGNLEVTKRPSDIVGIVKDEIETMKSYDTEQEVEYFYSGV 371

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                        A+I+ NL   A    P+GGK+ +SV+         +  +G      +
Sbjct: 372 EGPLVAHVDPDRIAQIVRNLLSNAVKFSPKGGKIVVSVRKEAQSVRVDVADSGCGISKVD 431

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D                 +       +   +   +    ++        ++ 
Sbjct: 432 -CVRIFDKFTQVDSSNTRKHRGTGLGLAISKGIVEAHGGDIGVTSVEGAGSEFFFVVP 488


>gi|311694901|gb|ADP97774.1| sensor histidine kinase [marine bacterium HP15]
          Length = 614

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 65/210 (30%), Gaps = 12/210 (5%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMR 68
               + + H+I +P+  I  +++ L     + +  +L+                 L + R
Sbjct: 395 GQFSAGVAHEIRNPLATIKTTIQALSRKESDPKRQKLMESVDHEIDRVNDVVQLLLDYAR 454

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                   V+ +  +  ++ + +          V    E +    + +++   +  +   
Sbjct: 455 PREAKASKVNIIDVVETVKILADAVAHRHGIELVQVEHESVYAWADSSQVRQIVMNLVMN 514

Query: 129 SLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
           ++        +VTI  +        S+  NG           + +    +  +   +   
Sbjct: 515 AIQAMEGIGGRVTIRTKQQGLAVYVSVSDNGPGVSADHLI-HLTEPFFTTKTNGTGLGLA 573

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               LA  N+  L  + +    + ++  L 
Sbjct: 574 ICRQLAQANQGNLRFQSVSGEGLKVTLKLP 603


>gi|312110945|ref|YP_003989261.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216046|gb|ADP74650.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 456

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 56/215 (26%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRL-AFGYT 74
           + I H++ +P+  +    ++           +  + +I   +      +K +   A    
Sbjct: 240 ASISHELRTPLTYVKGYADIARRSNMGEEERNRYLSIIYEEAEHMQKLVKDLFELAKMDQ 299

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEKIDLSRERAKILLNLFM 124
            S      L ++    +      +                +       +   ++++NL  
Sbjct: 300 HSFQIHKELTNLCSFFKKLHDKMQPAFQAKKMSLVYYCDGSITVHIDQKRFEQVMMNLLD 359

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
            A     +G  V+I V+  K+  +  +   G      +                 T    
Sbjct: 360 NALKYSDQGSIVSIDVRKEKHHIVIIVSDEGRGIPKEDLPHIFERFYRVDKSRSRTSGGT 419

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +   +   +           +   L 
Sbjct: 420 GLGLAIVKEIVEAHGGAIYAASEYGKGTNMIITLP 454


>gi|254478799|ref|ZP_05092166.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
 gi|214035254|gb|EEB75961.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Carboxydibrachium pacificum DSM 12653]
          Length = 451

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   + S I H++ +P+  + + +E + +       E ++ +    +  I  +K +    
Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGVWEPTHERLKSLNEEVLRLINIVKDLETLN 291

Query: 72  GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +   +           + +  +    +        +    +             A++ +
Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 411

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +   +   +  E   +     +  + 
Sbjct: 412 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFTVKIP 450


>gi|171912617|ref|ZP_02928087.1| periplasmic sensor signal transduction histidine kinase
           [Verrucomicrobium spinosum DSM 4136]
          Length = 409

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 71/243 (29%), Gaps = 30/243 (12%)

Query: 1   MAKNICF---NLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----------GI 45
           M +        L +  L     + +++ H++ +P+GAI  +L+LL               
Sbjct: 129 MTRRHDAELARLRAERLAQVGTMAAQVAHEVRNPLGAISLNLDLLACEVTELASSAPTPA 188

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                +   L         +  ++   Y G       +     +          +     
Sbjct: 189 THTPHEAHALVDQIRAEVERVEKVVRDYLGFARLPKVMPAPHCLHTFLDEKLALLLPELG 248

Query: 106 GEK--------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
                               + +  ++LLNL + A  ++P GG + ++ + S      ++
Sbjct: 249 KAHVRLIKSYDPQVRTANIDAVQLWQVLLNLVLNARDAMPAGGVLRVATRQSGTALQITV 308

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              G   R  +  + +      +  +   +       +  E+   L  + I       + 
Sbjct: 309 TDTGCGIRKEDLPS-LFTPFFTTKANGTGLGLALSHQIIAEHDGELSCQSIPGSGTTFTI 367

Query: 212 LLE 214
            L 
Sbjct: 368 TLP 370


>gi|156743072|ref|YP_001433201.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
 gi|156234400|gb|ABU59183.1| histidine kinase [Roseiflexus castenholzii DSM 13941]
          Length = 397

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
            +     L  M L A L +   HDI +   ++    +LL +         L  +      
Sbjct: 154 TQERLHQLEEMRLRATLAAGAAHDIGNLFASVLGHAQLLQQAAPSHLQDDLKTIEQAARD 213

Query: 58  -----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEK 108
                   +            T  V     + D  Q+   F    + V+V+         
Sbjct: 214 GHYLLRRLLTIRSATHSVEATTSPVLLPTLVHDALQLTRPFWGTRRSVKVNMALAPVPPV 273

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++L+NL +   +++P GG +T+    +    +  +   G      ++   I 
Sbjct: 274 RGHPADLREVLINLILNGVSAMPEGGTLTVRTYSTGERAVVEISDTGAGIAPAQQNA-IF 332

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V +      +       +       +            +  L 
Sbjct: 333 QPFVTNRSTGSGLGLSISRTIVESYGGVISVASTPGRGATFTISLP 378


>gi|320354947|ref|YP_004196286.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123449|gb|ADW18995.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
          Length = 550

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 77/240 (32%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVG--------IED 47
           A N    L +  ++AL  + + I H++ +P+ +I      + +LL E             
Sbjct: 311 AANSDMLLQANKMIALSKMAAGIAHEVNNPLASISEKAGWMKDLLAEEDIAASPNFAEFS 370

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           E +  I      A   +  +             I + ++       +  + R       +
Sbjct: 371 ESIDKIEYHVDRARKIVHNLLGFARRMEPAKEKININNLLDETTGLLENEARYVNILIKK 430

Query: 108 KIDLSR--------ERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNL 157
           +   +         +  +++LNL   A  ++   G +T+  +  ++  +    +   G  
Sbjct: 431 QYAENVPVITSDLSQIQQVVLNLLNNAIDAIGSDGTITVGSRYLEDTDQVELWVADTGKG 490

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               E+  +I +    +        +       +  +   ++  +       + + LL K
Sbjct: 491 IPEAEQS-KIFEPFFTTKAVGKGTGLGLSISYSIIEKLGGKMRVQSKVGEGTMFTILLPK 549


>gi|257454302|ref|ZP_05619568.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
 gi|257448319|gb|EEV23296.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Enhydrobacter
           aerosaccus SK60]
          Length = 555

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 67/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       + ++     + + H+I +P+  I   LELL++  ++ +    I+    S 
Sbjct: 165 LRQQRYQAERADEVKTAFLANMSHEIRTPMNGIIGILELLEQTPLDTQQQHYIKSIKTSN 224

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                                   +  VD    L           A D  V++++     
Sbjct: 225 EHLLTIVNDILDLSKVESGKIRFESIPVDLAQ-LCQDVYQCFLATAKDNSVELTFDYPDN 283

Query: 110 DLSR------ERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFP 161
                        +IL+NL   A    P+ GKVTI   +    ++  F++   G   +  
Sbjct: 284 LPKYVNTDPVRVRQILINLVNNAIKFTPKQGKVTIQAMNGGDKHQIKFNVIDTGVGIKPE 343

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       D           +       LA      +      +     +  L 
Sbjct: 344 SLAVIFDAYNQADKFTHRLYGGTGLGLSVCKALAEGMGGTIKVTSEKNKGSTFTLSLP 401


>gi|229185333|ref|ZP_04312516.1| hypothetical protein bcere0004_28870 [Bacillus cereus BGSC 6E1]
 gi|228598066|gb|EEK55703.1| hypothetical protein bcere0004_28870 [Bacillus cereus BGSC 6E1]
          Length = 801

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAIVGQLATVMAHEINNPLTAMKGFMQLLKLTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + ++++        +S 
Sbjct: 632 RIESITNEFMAVAKPQMVKIQLNDISVLIDQVLMLLQPQAMMNNIKIRIELKPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPTGGEILIQVNILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ +++ E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHRGKVVIESEVNKGTIVEVTLP 795


>gi|220904945|ref|YP_002480257.1| osmosensitive K+ channel signal transduction histidine kinase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869244|gb|ACL49579.1| osmosensitive K+ channel signal transduction histidine kinase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 961

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------------ 51
           +I        L A +   + HD+ +P+ AI  +  +L   G  +   +            
Sbjct: 707 DIAVRAQQEKLRADVLRSVSHDLRTPLTAICGNAAMLAAGGDIEMQRRKSLARAIEEDAR 766

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            +     + +   +  +  F    + + +  +      +    A    ++V      +  
Sbjct: 767 YLVEMVENLLALTRLEQYGFTLRLAPELMEDIIREALAVTRRRAAAHNIRVDMADALLMA 826

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +     ++L+NL   A    P G  + IS Q         +  NG      EK  +I 
Sbjct: 827 RMDARLMVQVLVNLLDNAVKYTPAGTTIRISAQADGARARLEVADNGPGISAEEKT-RIF 885

Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D           +     +       +   +   L          V S  L++
Sbjct: 886 DMFHSAVIKKGDSRRGMGVGLALCRSIVQAHGGDLRVHDNTPRGAVFSLDLQR 938


>gi|254446435|ref|ZP_05059911.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260743|gb|EDY85051.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 438

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 69/230 (30%), Gaps = 19/230 (8%)

Query: 3   KNICFNLSS-MDLV--ALLCSRICHDIISPIGAIHNSLELL-----------DEVGIEDE 48
           +     + +   L+  ALL S + H+I SP+ A+   L  L           ++      
Sbjct: 203 QEQELQMQAQEKLMSLALLASGVAHEIRSPLAAMKARLYTLKTEMAQNESAIEDHQAISV 262

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +  I     S +   +          +   +  L +          +  +         
Sbjct: 263 EIGRIEKIVNSFLQLARPADPEIEIVNTRTLVTTLVNERAKEYQTKGILIKCGKLVDQPV 322

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKF 164
                +  +IL NLF  A  ++   G++TI    +  ++       +   G    F ++ 
Sbjct: 323 WADPDQLRQILSNLFQNAKDAISERGEITISSKTTTINATPAVRIDVFDTGKGIPFNQQT 382

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +      +      +L  +   R+     +      S  + 
Sbjct: 383 -RLFDPFYTTKKSGTGLGLPLSQILIGKQGGRIAFRSQEGEGSCFSITIP 431


>gi|182416433|ref|YP_001821499.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177843647|gb|ACB77899.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 841

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 65/244 (26%), Gaps = 33/244 (13%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS-----LELLDEVGIEDEVMQLIR- 54
           ++    L +  L +L  L   I HD  + +  +        LEL  +   E  V Q+   
Sbjct: 451 ESERSLLQAQKLDSLRVLAGGIAHDFNNLLTVVLGHATMTRLELAADSPAEKAVHQIELA 510

Query: 55  --LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              ++      L +       T  +D    + +   ++   I+   R+Q+  +     + 
Sbjct: 511 ALRAADLCRQMLAYSGRNQLATEPLDLTTIVEETGDLLRVSISKKCRLQLELSRALPPVQ 570

Query: 113 RERAKILLNLFM----------------------VAHASLPRGGKVTISVQDSKNENIFS 150
            +  ++                                +        +            
Sbjct: 571 GDATQLSQIAMNLVINASDASEERGGLILLRTGLCDADATYLADACFVQSPAPGPYVYLE 630

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +  +G     PE   +I +    +    H +    V+ +   +   +  +          
Sbjct: 631 VTDHGCGM-SPEVRRRIFEPFFTTKFTGHGLGLSAVLGIVRAHGGGIKVDSAPGRGTTFR 689

Query: 211 ALLE 214
            LL 
Sbjct: 690 VLLP 693


>gi|146283612|ref|YP_001173765.1| sensor histidine kinase [Pseudomonas stutzeri A1501]
 gi|145571817|gb|ABP80923.1| sensor histidine kinase [Pseudomonas stutzeri A1501]
          Length = 984

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 25/239 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L +          I  
Sbjct: 738 LTETQQLEDRLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLRDEREGDGEIVEISA 797

Query: 48  EVMQLIRLSSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           ++++  +  S      + F                        +  +  +   V      
Sbjct: 798 QIIEQTKRVSRIVQSLMSFAHAGERQHQLYPVSLAQVTQDAIGLLSLNRNRTEVQFLNLC 857

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +  A++L+NL   A  + P GG + ++   ++     +++  G+     E
Sbjct: 858 HPDHVAEGDPQRLAQVLINLLSNARDASPPGGVIRVTSDVAEQTVYLTVEDEGSGI-PKE 916

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
              ++ +    +        +    V  +  E+  ++  +   D            L +
Sbjct: 917 IQDRLFEPFFTTKDPGKGTGLGLALVYSIIEEHYGQIDIDSPADPETQRGTRFRITLPR 975


>gi|197116465|ref|YP_002136892.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
 gi|197085825|gb|ACH37096.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
          Length = 578

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 56/222 (25%), Gaps = 25/222 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74
           +   + + H+I +P+  +    ELL    ++++    +++   S    L  +      + 
Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHSELDEKQKSYVKILHQSGESLLGIINDILNISK 257

Query: 75  ----------GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119
                        D         ++  +         + +++       +       ++L
Sbjct: 258 IEAGRLEIERIPFDLHETARGAVELYREVGRRKGVAVELQIEEDVPRCVVGDPSRLRQVL 317

Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQI-----VDG 170
           +N+         +G             +     F +K  G                 VDG
Sbjct: 318 INVVNNGLKFTDKGSVQVRVTLVEQYQNGQYVAFEVKDTGIGIPADCIGDIFGLFAQVDG 377

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +         +       L       +  E         + +
Sbjct: 378 STTRKYGGTGLGLAIAKQLVELMGGAIGVESEPGQGSTFTFI 419


>gi|56420367|ref|YP_147685.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|47076792|dbj|BAD18334.1| two-component sensor histidine kinase [Geobacillus kaustophilus]
 gi|56380209|dbj|BAD76117.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 434

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 75/223 (33%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           +        M+ V  L + I H+I +P+ A    ++L++E  +  +  +           
Sbjct: 192 RKRVIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELD 251

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLS 112
            +  I   ++  A     + + L    +IE+VI+    +     V           I   
Sbjct: 252 RAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGER 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  + LLN+   A  ++P GG + +SV       +  +   G      E+  ++ +   
Sbjct: 312 EKFRQCLLNVMKNAIEAMPNGGTLQVSVSIDSGRVLIRIADTGVGM-TKEQLERLGEPYF 370

Query: 173 EST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +    +    V  +       +  E        +S  L 
Sbjct: 371 TTKGVKGTGLGMMVVYRIVESMNGTIRIESEVHKGTTVSIYLP 413


>gi|325663210|ref|ZP_08151660.1| hypothetical protein HMPREF0490_02401 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470664|gb|EGC73894.1| hypothetical protein HMPREF0490_02401 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 241

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            +N    +    L+     + S++ H+I +P+  +++SL+L++    +   +Q    +  
Sbjct: 15  KQNPEIQILIEKLMKEYEFILSKMSHEIRNPLTLVYSSLQLMEAQHPQLTKIQHWSDTLE 74

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----------FIAVDKRVQVSWTGE 107
                   +     Y       + +      +                           +
Sbjct: 75  DVKYICGLLDELSSYNHGEHLNLSVFPFSVFLRHIALSFALSLEQTNIQFCSEIADNLPD 134

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   R+  ++LLNL   A  ++   G + +    + +  I  +  +G      +  T I
Sbjct: 135 LIGDQRKLQEVLLNLLQNAKDAITENGLIRLKAFCNDHHVIVEITDDGCGLTSEQIPT-I 193

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   +       +   ++  L            +  L 
Sbjct: 194 FSPFTSYKTNGTGLGLAICKRIIDSHRGTLTVSSKPGSGATFTVSLP 240


>gi|229051835|ref|ZP_04195282.1| hypothetical protein bcere0027_57210 [Bacillus cereus AH676]
 gi|228721513|gb|EEL73010.1| hypothetical protein bcere0027_57210 [Bacillus cereus AH676]
          Length = 618

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 17/225 (7%), Positives = 58/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 389 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 448

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  +  + +  +  +     +  + + ++        +S 
Sbjct: 449 RIESITTEFMAVAKPQVVKMQLNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 508

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 509 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 567

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  +   +    +   L 
Sbjct: 568 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 612


>gi|256828778|ref|YP_003157506.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577954|gb|ACU89090.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 683

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 64/243 (26%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRL 55
           M +     + +  +  L  + + I H+I  P+ AI      L LL E   +    Q+  +
Sbjct: 416 MMEKDAQLVQAAKMKTLGEMSAGIAHEINQPLNAIKMGSEYLNLLIEQNRQVTETQIRDM 475

Query: 56  SSM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------- 102
           ++        A   +  +R     +G V   + + +  + +   I     +Q        
Sbjct: 476 ATEISQQVDRATDIINNLRAFGKKSGLVMERVDMNEPIRGVLSIIGRQFSIQRITIRLEL 535

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKI 153
                     +    ++  NL   A  ++           G + +           S   
Sbjct: 536 GEGLPYIKGHNNRLQQVFFNLLNNARDAIQEKMENEPGMWGDILVRTYTQDGRVFASFAD 595

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           NG          +I +    +        +       +  +    +  +           
Sbjct: 596 NGPGIADS-VRNKIFEPFFTTKQTGKGMGLGLAITYGIVRDYGGIITIDSQPGQGTTFIL 654

Query: 212 LLE 214
              
Sbjct: 655 SFP 657


>gi|313891038|ref|ZP_07824657.1| sensor protein SrrB family protein [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120401|gb|EFR43521.1| sensor protein SrrB family protein [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 352

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 76/235 (32%), Gaps = 20/235 (8%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQL 52
           +++N+      +  +A L     S + H++ +P+ ++    +LL +       + E++ L
Sbjct: 115 LSQNVNQMAQDLKNLAQLRQDFISNVSHELKTPVASLVGLSDLLVDSDLSKEDQAELLAL 174

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTG 106
           ++  ++        +                           ++      +K + + +  
Sbjct: 175 MQSETLRLSRLCDDILNLSRLDRQNQLRIEKVRVDEQIRHSLILLKEKWKEKEIHIDFQA 234

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
             +    +     ++ LNL   A     +   +TI +Q+ +N    + +  G        
Sbjct: 235 LPLLWGTDPDLSMQVWLNLLDNAIKYSGKQVNLTIIMQEEQNGLSLTFRDKGIGIASDKL 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F Q    +   + +   +    V  +    K +L     +     +S  L +
Sbjct: 295 RYIFDQFYQIDHSHSQEGSGLGLAIVKRIVTLLKGQLEVVSQEGEGTQVSLYLPR 349


>gi|312113732|ref|YP_004011328.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
 gi|311218861|gb|ADP70229.1| histidine kinase [Rhodomicrobium vannielii ATCC 17100]
          Length = 630

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 67/236 (28%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIR 54
                  + +   +   + + H++ +P+ AI    E++ +  +        E  V  +  
Sbjct: 383 EEKIRAEAANQAKSEFLANVSHELRTPLNAIIGFSEMMRDGVLGPIGNPKYESYVKDIHN 442

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------- 105
                  +    + ++    G          +  V ++ ++V   V +            
Sbjct: 443 SGRYLLEMINDILDMSKIEAGRWTLSPEWFTMSDVFQECLSVVSPVAMEGNVELSQSGNT 502

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   R   ++L+NL   A    P+ GKV++     +     ++   G      +  
Sbjct: 503 SISLYGDRRALKQVLINLLSNAVKFTPQDGKVSLRAYRYRGSIRIAIADTGVGIPKHDLG 562

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                   +       L   +  +L  +        ++ +L 
Sbjct: 563 -RLGRPFEQVSNQLTKGHKGTGLGLAISRSLVEMHGGKLDIKSRVGEGTTVTCILP 617


>gi|322421164|ref|YP_004200387.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127551|gb|ADW15111.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 769

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 55/241 (22%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--------IR 54
           +        M+ +A L   I HD  + + +I    E+  +    +  ++           
Sbjct: 382 ERQLRQAQRMEAIATLAGGIAHDFNNNLASIITCTEMARDDVPPESPLRELLDVVLKSSY 441

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F          V     + +   ++   I     V+ +       +  +
Sbjct: 442 RGRKLVKQILTFCCQGEQERQPVQVESIVTECLNLMRPSIPSSITVRTTLQENPGLIMAD 501

Query: 115 RAKILLNLFMVAHASLPRG------------------GKVTISVQDSKNENIFSLKINGN 156
             +I   +  +   +                        +             ++K  G+
Sbjct: 502 PTQIHQIIMNLVTNASHAMRLKGGTLEIFLEVVTVGSPSLGAPDLPPGPYLKLTVKDTGH 561

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    QI D    +    +   +    V  +   +   +               L 
Sbjct: 562 GMDPK-TMEQIFDPFFTTKGHNEGTGLGLSVVHGIVRNHGGGITVSSRPGAGATFEVFLP 620

Query: 215 K 215
           +
Sbjct: 621 R 621


>gi|190894857|ref|YP_001985150.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
 gi|190700518|gb|ACE94600.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 780

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 49/236 (20%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRL 55
            + +   L        L     S   H+  +P+  I  + + L   +     E +     
Sbjct: 531 TEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLAEKAD 590

Query: 56  SSMSAI--------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              S++                            S+  +I      Q             
Sbjct: 591 QIRSSVSRMLELMESILAAGRLDHGRITIVPKPCSIAEIIETCSARQESIRRSHRFLLKL 650

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++  NLF  A    P    V +S          +++  G      
Sbjct: 651 DELPETIYGDRPALDQVFSNLFSNAVKYAPDSPNVHVSGWQEGERVCITVRDEGIGIDAD 710

Query: 162 EKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +        I    V  +   +   +       +    +  + 
Sbjct: 711 DLPKMFQRYFRARSSTGIAGTGIGLNLVKQIVELHGGTIDVASSRGNGTTFTLRIP 766


>gi|37521062|ref|NP_924439.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212058|dbj|BAC89434.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 602

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 57/217 (26%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
           + + H++ +P+ +I    +LL     + E + +   +          +            
Sbjct: 383 ATVSHELRTPLNSILGFTQLLRRHAGDPERLAVALDAIERNAKAQARLTEDLLDVSRIIT 442

Query: 71  ---FGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLF 123
                    V     +    + +             +           S    +++ NL 
Sbjct: 443 GKLKLTIQPVRVNALVDAAIETMRTAAEAKNIALSAIYPEAPCTLQADSNRLQQVIWNLL 502

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDS 178
             A    P GG++ +SV+    +   ++  +G        P  F +    +     T   
Sbjct: 503 SNAIKFTPVGGRIRVSVERRAGQVHIAVADSGMGIAAEFLPFVFDRFRQADSSSTRTFGG 562

Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             +    V  L   +   +       +        L 
Sbjct: 563 LGLGLAIVRHLVELHGGSVEAHSAGPNQGATFVVSLP 599


>gi|108805571|ref|YP_645508.1| histidine kinase [Rubrobacter xylanophilus DSM 9941]
 gi|108766814|gb|ABG05696.1| histidine kinase [Rubrobacter xylanophilus DSM 9941]
          Length = 257

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 61/222 (27%), Gaps = 24/222 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P  ++    E L+     +          +R  +      +  +     
Sbjct: 29  FVANVSHELKTPATSLKLLAESLEQAIEEDPEQARLFAAQLRKETERLARLITDLLDLAR 88

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERAKI 118
                   Y   VD    +  +   +             KR   +          + A +
Sbjct: 89  LESEERSEYPEIVDLRGVVMSVLARMRRVAREKGIELRWKRFGRASEYTVRGDETQLASM 148

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST 175
           L NL   A      GG+V ++   +  E    +   G        P  F +    +   +
Sbjct: 149 LTNLVDNAVKYTQPGGRVEVTGGCANGEVFIRVSDTGIGIPPDKLPRIFERFYRVDKARS 208

Query: 176 --IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    V  +A  +  R+  E +       +  L +
Sbjct: 209 KATGGTGLGLSIVKHVAENHGGRVTVESVPGEGSTFTVYLPR 250


>gi|320355008|ref|YP_004196347.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
 gi|320123510|gb|ADW19056.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
          Length = 730

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 63/221 (28%), Gaps = 17/221 (7%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           +  M+ +  L + I H+  +P+  I  +L    +       +  ++QL           +
Sbjct: 485 IQKMEAIGKLAASIAHEFGNPLLGIRFALRDVQQRAQLEQDDAHLLQLAESECDRMRKLI 544

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERAKIL 119
           + ++     +           I + I              V   +    I L     ++ 
Sbjct: 545 RDLQQFNRPSSGRKVEFDPHRILEEIMALHHNLLTKKKITVIRDYEPRPIRLHAVEDQMR 604

Query: 120 LNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
             L  +   +           T+  + +  E +  ++ +G      E   +I +    + 
Sbjct: 605 QVLINLILNATDAMETAGGTLTLRTRLAGGEVVICVEDSGGGI-AEEHLQRIFEPFFTTK 663

Query: 176 --IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++   +       +   +   +  +       V +  L 
Sbjct: 664 AAVEGTGLGLAVSYGIVRGHGGDITVQSRPGQ-TVFTVTLP 703


>gi|255008320|ref|ZP_05280446.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313146041|ref|ZP_07808234.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134808|gb|EFR52168.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 870

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 59/234 (25%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +       L +  L +   + + H+I +P+ AI    +LL +            ++ I  
Sbjct: 635 LTAARDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLSDTSGFTEEEVKLFIETINK 694

Query: 56  SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +    +  +                     +  + + ++    +  +    R+ +     
Sbjct: 695 NCGLLLALINDILDLSRIESGTMDFQFAGHNLPLLMKNVYDSQQLNMPSGVRLVLKLPEN 754

Query: 108 KIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
                   +    +++ NL   A     +G       ++        ++  G        
Sbjct: 755 SKKYLVTDNVRLQQVVNNLINNAAKFTTQGSITFGYTEEEPGYTSIFVEDTGKGISEDGL 814

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +  +      +       +       +     +      +  L 
Sbjct: 815 RHIFERFYKVDSFTQ--GAGLGLSICQTIIGRLNGVITVTSKEGKGTRFTVRLP 866


>gi|299821889|ref|ZP_07053777.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
 gi|299817554|gb|EFI84790.1| phosphate regulon sensor histidine kinase protein PhoR [Listeria
           grayi DSM 20601]
          Length = 591

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 79/227 (34%), Gaps = 24/227 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRL-K 65
            ++     + + H++ +P+ A+    E L +  + DE      + +++  S      +  
Sbjct: 364 ENVRTEFVTNVSHELKTPVTALKGFAETLLDGAMYDEALLKKFLGIMKDESDRLHRLILD 423

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTG-----EKIDLSRE 114
            + L+     ++     + DI Q I +           K + +              + +
Sbjct: 424 ILALSRIEQHALPINQEVVDIYQTITEAAQTVTESAKQKNIDLVLPHAAKPLPIETDNDK 483

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             +I++NL   A A  P  G V + V++S +E +F++  NG      E   ++ +     
Sbjct: 484 LKQIIINLVSNAVAYTPENGTVKVDVEESPHEVLFTVADNGIGIPAKEI-ERVFERFYRV 542

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       +    V  L  +   R+    ++      S  L K
Sbjct: 543 DKARSRYSGGTGLGLSIVKHLTEQLGGRIEVASVEGEGTTFSIHLPK 589


>gi|220915440|ref|YP_002490744.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953294|gb|ACL63678.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 707

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 26/230 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             M+ V LL   I HD  + +  I    ELL             + Q  R  +      L
Sbjct: 338 QKMEAVGLLAGGIAHDFNNLLTGILGYAELLGEAGTAADEAAAGIRQAARRGAALTRQLL 397

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            F R        V+    + ++  ++E  +     ++         +  +  ++   +  
Sbjct: 398 GFARRGKYQQVPVNVHALVREVSALLERTLDKRIAIRHRLAAGSAVVRGDPDQLQQVVLN 457

Query: 125 ---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPEKFTQ 166
               A  ++P GG +T  V +                      ++   G          +
Sbjct: 458 LAVNARDAMPSGGTLTFEVAEVELDAEGTRARPGLAPGPHVAVTVADTGVGIPAV-VRDR 516

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +        +    V  +   +   +  E  +      + LL 
Sbjct: 517 VFDPFFTTKPAGQGTGMGLAMVYGIVQNHGGWVGFESEEGKGARFTVLLP 566


>gi|149922527|ref|ZP_01910958.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149816635|gb|EDM76129.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 739

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 76/245 (31%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + ++    +    S+ + AL  L S I HD  + +  I  S ELL     + E   +I  
Sbjct: 349 LTEDRTREMAQRQSLRMAALGRLASGIAHDFNNVLAGIGFSAELLQARVEDPESQAIIAS 408

Query: 56  SSMSAIIRLKFMRLAFGY---------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + S I    F++    +            +D                 V+  ++++   
Sbjct: 409 IAQSTIRAGHFVKQVLMFARRTERDLAPQLLDEAFADSLAMIARSMPATVELHIELAPRL 468

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSL 151
             +    +  +++ NL   A  +L   G +                    +++   + S+
Sbjct: 469 CVMADVGQLEQLITNLVTNARQALGGRGGIWVELRERCRDALPESQRPADETERCAVLSV 528

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           + +G+          I D    +    +   +    V  +   ++ R+      D     
Sbjct: 529 RDDGSGIEQGAL-EHIFDPFFTTKPAEEGTGLGLSIVHSIVEAHRGRISVTSQVDVGTEF 587

Query: 210 SALLE 214
           +  L 
Sbjct: 588 TVSLP 592


>gi|219849406|ref|YP_002463839.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219543665|gb|ACL25403.1| GAF sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 794

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV------MQL 52
            ++      S  L A+    + I H+  + +  +    +L L +  +E +       +  
Sbjct: 417 QESQSELGRSAKLAAVGTFAASIAHEFNNLLSGMLGYAQLGLTDDDVEMKNEALKVVLDT 476

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            +         L F R         D    +     ++E  +       V          
Sbjct: 477 CKRGRSITGSLLTFARRRDSRRELSDLREVVEGTLTLMEIDLRKHSVRVVRQIEMVPPTI 536

Query: 113 RE---RAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +    +++ LNL   A  ++   G  +T++++      +  +   G          +I 
Sbjct: 537 CDAGQISQVFLNLLTNARDAMKPKGGTLTVTLKAEGEWIMLQVADTGCGI-PEAIRRRIF 595

Query: 169 DGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V +           +       +   +  R   E        ++  L 
Sbjct: 596 QPFVTTKNSTGSQSGTGLGLAVSYGIVQNHNGRFEVESEVGKGTTMTIWLP 646


>gi|319654330|ref|ZP_08008418.1| hypothetical protein HMPREF1013_05038 [Bacillus sp. 2_A_57_CT2]
 gi|317394030|gb|EFV74780.1| hypothetical protein HMPREF1013_05038 [Bacillus sp. 2_A_57_CT2]
          Length = 552

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 71/222 (31%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLS 56
           A+        + +V  L + + H+I +P+ ++   ++L+     + +     + + +   
Sbjct: 318 AEERLRRTEKLSVVGELSASVAHEIRNPLTSLKGFVQLMQLEDEKHQFYYQIMQEELDRI 377

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE----DFIAVDKRVQVSWTGEKIDLS 112
           +      L   +         D    L ++  +++          + +  S         
Sbjct: 378 NHIVGELLLLAKPQDICFTKADVQKILFNVISLLKTEASMHNVQIEFLLKSDVYMIECEP 437

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++ +N+   A  +   GGKVT+++Q    +    +K NG      E+  +I +   
Sbjct: 438 NQLKQLFINIIKNAIEASSDGGKVTVTLQAEDRQLTILVKDNGCGM-SEERLNRIGEPFY 496

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S      +       +   +   +               L 
Sbjct: 497 SSKEKGTGLGLTVSFKIVQSHNGSIYFNSKKGKGTEAVIKLP 538


>gi|294054185|ref|YP_003547843.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293613518|gb|ADE53673.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 1191

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 55/252 (21%), Gaps = 38/252 (15%)

Query: 2    AKNICFNLSSMDLV-------------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE 48
             +       S +LV             +   + I H+I +P+ +I    ++L +  +   
Sbjct: 808  QRTQELQRQSEELVIAKEHAESANRIKSEFTANISHEIRTPMNSIMGFADILRDETVNPT 867

Query: 49   VMQLIRLSSMSAIIRLKF----------------MRLAFGYTGSVDSLIGLGDIEQVIED 92
                +     S    L                  +        S           ++ E 
Sbjct: 868  HQHYLDAVLKSGDTLLHMIDDLLDMSKLEADKLSLHPRPTNLSSETRDTLRMFQPKLSEK 927

Query: 93   FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENI 148
             + ++     +     +  +    ++LLN+   A      G                   
Sbjct: 928  ALDLEFLSDPNIPSSLLIDATRYRQVLLNIVGNAIKFTDSGKISIRLELVRQYALHAHVR 987

Query: 149  FSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
             ++   G      +             +   +     +       L      ++      
Sbjct: 988  CAISDTGEGIPENQLQRIFNAFEQASRDFTRSEMGSGLGLAISKRLVEMMDGQIRVVSRV 1047

Query: 204  DHNVVLSALLEK 215
                  +    K
Sbjct: 1048 GRGSTFTVDFPK 1059


>gi|196036864|ref|ZP_03104251.1| sensor histidine kinase [Bacillus cereus W]
 gi|195990517|gb|EDX54498.1| sensor histidine kinase [Bacillus cereus W]
          Length = 357

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + I  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPIWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++ +G      +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 299

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 300 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352


>gi|313888990|ref|ZP_07822649.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844976|gb|EFR32378.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 556

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           +    + ++ L     S + H++ +P+ +I    ELL     ++   E     +   S  
Sbjct: 326 DETEEIRALRLREEFSSNVSHELKTPLTSISGFSELLVNNLVEDKDKEGFYKLIYDDSKR 385

Query: 59  S------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDL 111
                   +               VD    + ++ +  E+ I   +  V++   G   + 
Sbjct: 386 LLSLVEDIMKISGLENAGDYDKEEVDLREIISEVLKGYENLIEEKNLEVKLEGQGTVFEN 445

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                ++  NL          GG++ I + + +      +   G      +   +I +  
Sbjct: 446 RTMIWELFSNLINNGLKYNKEGGRLDIKISEEERAYKIIIADTGIGIPQEDL-ARIFERF 504

Query: 172 V------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     +    +    V  +  +   ++              LL K
Sbjct: 505 YRVDKSRSRKVGGTGLGLSIVKHILQKIGGKVKISSQLGQGTTFELLLNK 554


>gi|309777925|ref|ZP_07672868.1| sensor histidine kinase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914323|gb|EFP60120.1| sensor histidine kinase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 468

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M   +  +  +        S + H++ +P+  I +  EL  E   + +  Q         
Sbjct: 239 MMDRLEKSFQAEK---QFTSDMSHELRTPVSVILSQCELSLEEEQDQQAYQDALHVIKRQ 295

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------------ 108
             ++  M         ++       ++++    +       +    EK            
Sbjct: 296 GQKMSAMINDMLTMTRMEQRTDRIVMKELDFSLLCDTVCQDLCLLHEKGIQLEYRLTKGI 355

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
                     ++L+NL   A+      G +++ +Q +    + S+  NG           
Sbjct: 356 VVWGNEELLRRLLVNLISNAYRYGKENGHISVVLQKTGENVLLSVSDNGYGIGKEHIDHI 415

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +   T     +    V  +A  +   +  E  +      S  L 
Sbjct: 416 WQRFYQADTSHTHQGSGLGLAMVQEIAQLHGGWMKVESEEGEGSCFSLHLP 466


>gi|303246010|ref|ZP_07332292.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492793|gb|EFL52661.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 403

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 30/234 (12%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE-----------------VGIEDEVM 50
            +  +    +L + + H++ +P+ AI    E L                         ++
Sbjct: 164 QAEKMATIGMLATGVAHEVNNPLTAIFGFAEGLRRRLPTLRETVDPAVMDDVEDYVTTIL 223

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------S 103
           Q  R         L F R        V     + D  +++   +    + ++        
Sbjct: 224 QECRRCQDIVTTLLTFSRHKTVSFSPVSLNAVVEDTLKLLRSHLRQRNQAKITVRTELCE 283

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                     +  +++LNL + A  ++   G + I+     +     S++ +G      E
Sbjct: 284 DLPMVSGDEHQIKQVMLNLLVNAMDAIVGPGHIIITTFQEASGAVCLSVEDSGCGV-PKE 342

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +        I     + + ++++  +  +       V    L 
Sbjct: 343 NMDKLFEPFFTTKRAGKGIGIGLSTCMTIVNKHQGEITVKSKPGEGSVFIVKLP 396


>gi|295428067|ref|ZP_06820699.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|295128425|gb|EFG58059.1| sensor protein srrB [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 583

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSLNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|257425614|ref|ZP_05602038.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428275|ref|ZP_05604673.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430912|ref|ZP_05607292.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433601|ref|ZP_05609959.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410]
 gi|257436514|ref|ZP_05612558.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876]
 gi|282904071|ref|ZP_06311959.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160]
 gi|282905898|ref|ZP_06313753.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908808|ref|ZP_06316626.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911127|ref|ZP_06318929.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282914296|ref|ZP_06322082.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899]
 gi|282919265|ref|ZP_06327000.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427]
 gi|282924590|ref|ZP_06332258.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101]
 gi|283958253|ref|ZP_06375704.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293503373|ref|ZP_06667220.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510388|ref|ZP_06669094.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809]
 gi|293530927|ref|ZP_06671609.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015]
 gi|257271308|gb|EEV03454.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275116|gb|EEV06603.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278342|gb|EEV08978.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281694|gb|EEV11831.1| sensor protein srrB [Staphylococcus aureus subsp. aureus E1410]
 gi|257283865|gb|EEV13988.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M876]
 gi|282313425|gb|EFB43820.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C101]
 gi|282317075|gb|EFB47449.1| sensor protein srrB [Staphylococcus aureus subsp. aureus C427]
 gi|282321477|gb|EFB51802.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M899]
 gi|282324822|gb|EFB55132.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327072|gb|EFB57367.1| sensor protein srrB [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331190|gb|EFB60704.1| sensor protein srrB [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595689|gb|EFC00653.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus C160]
 gi|283790402|gb|EFC29219.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920195|gb|EFD97261.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus M1015]
 gi|291095039|gb|EFE25304.1| sensor protein srrB [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466752|gb|EFF09272.1| sensor protein srrB [Staphylococcus aureus subsp. aureus M809]
          Length = 582

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 423

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 424 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTYDMDRMDQVLTNLI 483

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 484 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 543

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 544 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580


>gi|271969947|ref|YP_003344143.1| histidine kinase [Streptosporangium roseum DSM 43021]
 gi|270513122|gb|ACZ91400.1| Histidine kinase [Streptosporangium roseum DSM 43021]
          Length = 593

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 22/231 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEV 49
                 + +      + S + H++ +P+  +   +E   +                   +
Sbjct: 359 SEHLERMEAQRKA--MVSDVSHELRTPLSNLRGWMEAAQDGVAELDAELIASLVEEIMLL 416

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             ++      A+     +RL        D L  +    +   D   +      +     +
Sbjct: 417 QHIVDDLQELALADAGKLRLHPEPVNVADLLDQVATAHRGRADSAGLTLTADTAGDPGLL 476

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  + + NL   A    P GG++ +  + +    +  +   G     PE   ++ D
Sbjct: 477 ADPVRLRQAVGNLVSNAVHYTPPGGRIALRGRLADGHVLIEVADTGVGI-APEHLPRVFD 535

Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +    V  LA  +   +          V +  L 
Sbjct: 536 RFWREEKSRNRRTGGSGLGLAIVRNLAEAHHGTVSVASTPGEGAVFTLRLP 586


>gi|229018482|ref|ZP_04175344.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273]
 gi|229024738|ref|ZP_04181177.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272]
 gi|228736581|gb|EEL87137.1| hypothetical protein bcere0029_30490 [Bacillus cereus AH1272]
 gi|228742834|gb|EEL92972.1| hypothetical protein bcere0030_30080 [Bacillus cereus AH1273]
          Length = 443

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +A N      S+     +     S + H+  SP+ +I    + L             +++
Sbjct: 206 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 265

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105
           I   S       K +            L       Q        + ++   +K + V + 
Sbjct: 266 IEGESKRMSSLCKQLLTLASLDKEEKVLQMKEFHLQKQIKDVIFMLEWKWREKDIAVEFD 325

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              I ++ +     ++  N+F  +      GG V   V+  ++  + S+  NG      E
Sbjct: 326 VPDIVINGDENLLHQVWSNIFTNSIKFSNDGGTVEFVVEKLESSIVISISDNGIGMEKEE 385

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +I D            I+   +    V  +   ++  +           +   L K
Sbjct: 386 -MDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHQGTVSVYSTKGEGTTVRVELPK 443


>gi|189465235|ref|ZP_03014020.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
 gi|189437509|gb|EDV06494.1| hypothetical protein BACINT_01580 [Bacteroides intestinalis DSM
           17393]
          Length = 390

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 59/232 (25%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           + +     + + +   L +   S + H+I +P+ AI     L+ + G E +      +  
Sbjct: 158 LRELAAARVKAEESDRLKSAFLSNMSHEIRTPLNAIVGFSRLVIDPGHEGDKEDYCNIIE 217

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------------VS 103
            ++ + L         +      +     +  +      +                  V 
Sbjct: 218 KNSELLLCLFNDILDLSEMESGTLEFVREKVNLYHACLEEYDSHRLKVNKGVILILDDVD 277

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +       ++L+NL   A    P G  +    Q   N   F +K  G        
Sbjct: 278 EELCVMGDRMRIMQVLMNLLSNAAKFTPTGE-IHFGYQLRGNIVQFYVKDTGIGIPANRV 336

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +      +L      R+     +         L 
Sbjct: 337 AKIFERFGKINNFAQGTGLGLTVSRMLVERMGGRIWVRSGEGIGTTFFFTLP 388


>gi|146308603|ref|YP_001189068.1| two-component sensor kinase CbrA [Pseudomonas mendocina ymp]
 gi|145576804|gb|ABP86336.1| Two-component sensor kinase CbrA [Pseudomonas mendocina ymp]
          Length = 984

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREERETDAELAEISGQILEQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                D       +  + +    +             
Sbjct: 805 RVSRIVQSLMSFAHSGGHQHSDEPVCLADVAQDAIGLLSLNKRNFEIQFYNLCDPEHWAE 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P GG + +  + S++     ++  G+         ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPPGGAIRVRSEASEHTVDLIVEDEGSGI-PKAIIDRLFE 923

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPERQLGTRIRVTLPR 975


>gi|62860912|gb|AAY16575.1| MhaS [Pseudomonas putida]
          Length = 991

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 73/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L E          +  
Sbjct: 738 LTETQALEDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREGDGEIIELSS 797

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++   +  S      + F      +          +       +  +      V     
Sbjct: 798 QILDQTKRVSRIVQSLMSFAHAGGSHQNSEEPVCLAEVAQDAIGLLALNRRNFEVQFFNL 857

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +         +  A++L+NL   A  + P G  V +  + S++     ++  G+     
Sbjct: 858 CNPDHWAEGDPQRLAQVLINLLSNARDASPPGSAVRVRSEVSEHTVDLIVEDEGSGIPKN 917

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               ++ +    +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 918 -IMDRLFEPFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADIERQRGTRIRVTLPR 976


>gi|297590965|ref|ZP_06949603.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MN8]
 gi|76363428|sp|Q6GGK7|SRRB_STAAR RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|297575851|gb|EFH94567.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MN8]
 gi|312438041|gb|ADQ77112.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH60]
 gi|315195388|gb|EFU25775.1| sensor kinase protein [Staphylococcus aureus subsp. aureus CGS00]
          Length = 583

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|49483741|ref|YP_040965.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49241870|emb|CAG40563.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MRSA252]
          Length = 588

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 429

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 430 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWTYDMDRMDQVLTNLI 489

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 490 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 549

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 550 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586


>gi|281355046|ref|ZP_06241540.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317926|gb|EFB01946.1| PAS/PAC sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1559

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 58/240 (24%), Gaps = 28/240 (11%)

Query: 2    AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
             K +   + +        +   + + H++ +P+ A+    ELL    + D+  Q    + 
Sbjct: 1156 QKKLTETMEAAQAADRAKSYFLATMSHELRTPLNAVIGFSELLQSGPMPDQEQQNALRAI 1215

Query: 58   MSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              A   L  +             ++                              + V+ 
Sbjct: 1216 NVAGATLLELINDILDLSKLEAGKMDIIPELLDPQEFLQTVSAIFTHTARTRKLSLTVTV 1275

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNL 157
                  L  +R ++   L  +   +                +V D     I  +   G  
Sbjct: 1276 PPAMPHLKFDRKRLRQVLVNLLGNAFKFTETGGVLLEAAFETVNDHFGTLILKVSDTGIG 1335

Query: 158  ARFPEKFTQIVDGN---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   Q+ D          +   +       L       +      +H      +L 
Sbjct: 1336 M-SPETVRQLFDPFRQHHTRDYEGTGLGLAISQRLVARMGGSIEVTSEPEHGSTFRIVLP 1394


>gi|322418337|ref|YP_004197560.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124724|gb|ADW12284.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 712

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 62/233 (26%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHN---SLELLDEV-GIEDEVMQLIRLSSM 58
           ++    +  ++ + +L   I HD  + +  I       ELL +        ++    +S 
Sbjct: 333 QSEILKVQKLESLGVLAGGIAHDFNNILTGIMGNLSFAELLLDPYHPAMNPVKNAEKASQ 392

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113
            A      +         +   + +G +         +  +VQ                 
Sbjct: 393 RAGELAHQLLTFSKGGQPIKKAVSVGRLLHESLSLSLLGTKVQTRLELPERLHAIEADEG 452

Query: 114 ERAKILLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKINGNLARFP 161
           +  +   N+ + A  ++P GG                    + +    S    G      
Sbjct: 453 QMNQAFSNVIINACQAMPVGGILTVKAENLALGAQNDLALPAGDYVRISFTDQGCGI-PY 511

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    I D    +      +    V  +  ++  ++           L+  + 
Sbjct: 512 EDQKLIFDPYHSTKPGGSGLGLASVHSIVIKHGGKVEVASAPGQGTTLTFYIP 564


>gi|228962520|ref|ZP_04123875.1| hypothetical protein bthur0005_58260 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228797170|gb|EEM44427.1| hypothetical protein bthur0005_58260 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 566

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + +I     
Sbjct: 337 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIISSEIE 396

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 397 RIESITTEFMAVAKPQVVKMQPNNMSVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 456

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 457 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 515

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  +   +    +   L 
Sbjct: 516 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 560


>gi|255100872|ref|ZP_05329849.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
          Length = 664

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
               L    ++++  L S + H+I +P+G I N+  LL +       ++ ++ I  +   
Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLS 112
           A   +  +      +      I + +  + I               ++            
Sbjct: 495 ASNIITNLLNFARISDDNLEHINIRNFIENIVKLQYKMLQLKNVEIKIDCEHNLICYING 554

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                + +NL   +  ++ + GK+ I   +  +      K NG   +       I +   
Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNHCLFIDFKDNGEGIKEDALKD-IFNPFY 613

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +  Y       +N   +  E            + 
Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657


>gi|225418785|ref|ZP_03761974.1| hypothetical protein CLOSTASPAR_06009 [Clostridium asparagiforme
           DSM 15981]
 gi|225041688|gb|EEG51934.1| hypothetical protein CLOSTASPAR_06009 [Clostridium asparagiforme
           DSM 15981]
          Length = 674

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 23/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
             N     S   L   + S I HD+ +P+  ++N LELL +  I     +      ++  
Sbjct: 421 RTNEQLEASQTALR-EMISNISHDLKTPLTVLNNYLELLGDETIASSERERTEYLGIAYH 479

Query: 62  ------IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                   ++ +                +      +  +      +     +D R++   
Sbjct: 480 KNLDLQRLIQNLFEVTRMEGGTVTYRIEWFSVDRLMGEIARKYADLIQDKGLDFRLEADR 539

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161
             E    S     +L NL   A    P+GG + +S+    +     +   G        P
Sbjct: 540 GTELHIDSIRIWSVLDNLVYNALRHTPKGGSIALSIHKKGDLARLQVADTGEGIEARHIP 599

Query: 162 EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             F +    + E      S  +  Y V          +  E       V +  
Sbjct: 600 HIFERFYKVSHERGERDGSSGLGLYIVKTTVEAMGGTVEVESTPGKGTVFTVT 652


>gi|168214234|ref|ZP_02639859.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
 gi|170714323|gb|EDT26505.1| sensory box histidine kinase [Clostridium perfringens CPE str.
           F4969]
          Length = 571

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 66/222 (29%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
            ++ +   + I H++ +P+ +I    E L    +    ++ + +I   S      L+ + 
Sbjct: 348 ENMRSQFVANISHELKTPLTSIKGFAETLRYVDDDETRNKFLSIIDEESDRLARLLEDIL 407

Query: 69  LAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKI 118
             +       +++   +           + +        + +        +    +  ++
Sbjct: 408 CLYEIEQKRSTVLEEFNVDEEIEKVYMLLNDQAKKKGVEIFLDTNSNCVLMGDKDKFKQM 467

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           LLNL   +     +GGKV +   +S    I  ++ NG      +   +I +         
Sbjct: 468 LLNLVSNSVKYTEKGGKVRVESYNSDMNLILVIEDNGIGISAEDLP-RIFERFYRVDKAR 526

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +           +   + 
Sbjct: 527 SRESGGTGLGLAIVKHIVRLFDGEINVTSELGVGTKIVIAIP 568


>gi|86159890|ref|YP_466675.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85776401|gb|ABC83238.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 520

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 79/230 (34%), Gaps = 18/230 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            + +   L  +  + A+  L   + H+I +P+G I    +L+   +    + E ++LI+ 
Sbjct: 279 EREVSRRLFHAEKMSAVGQLAGGVAHEINNPLGGILAFAQLMSREERSPEDMESLRLIQD 338

Query: 56  SSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEK 108
           ++  A   ++ +              VD    + D   ++   +   +   V        
Sbjct: 339 AANRAKRIVESLLRFSRRPREEERGPVDLRQVVDDALFLLSPQLRAGRFEVVRRFEPAIA 398

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
           +    +  ++++NL + A  ++   G VT++V  +       S+   G      +   +I
Sbjct: 399 VGNGNQLQQVVVNLLVNALQAMGDRGTVTVAVGPAATGRLRLSVADTGPGV-PEDAAQRI 457

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
            +    +  +     +       +  E+   +  E    H        L 
Sbjct: 458 FEPFFTTKPEGQGTGLGLSICYQIVEEHGGTIRLEQPGPHPGACFVLELP 507


>gi|329766324|ref|ZP_08257871.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137226|gb|EGG41515.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 307

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 77/216 (35%), Gaps = 10/216 (4%)

Query: 8   NLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAI 61
            + +  +     + SRI HDI +P+  I  S+E L         + +    I+ +     
Sbjct: 86  KIQTEKMAIVGEMASRIGHDIRNPLSVIQMSIENLKRTYEINEQQQKQFDKIQRAIFRIS 145

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---I 118
            ++  +               L  + +     I + + +++ +     ++  +  K   +
Sbjct: 146 HQMDDVMDFVKTPTISKKQCSLISMLEESIKRIKIPENIKIIFPKNDTEILCDEEKITIV 205

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
            +N+ + A  SL  GG +TIS + +K E +  ++ NG     PE   ++ +  V +    
Sbjct: 206 FVNMMLNAIQSLDSGGTITISAKSNKKEVMIKIEDNGIGI-KPEILKRVFEPLVTTKQSG 264

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +   +      +   +    L 
Sbjct: 265 TGLGLSSCKSIIDSHGGFIEASNKFEKGAIFCIHLP 300


>gi|302342987|ref|YP_003807516.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301639600|gb|ADK84922.1| multi-sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 610

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 64/232 (27%), Gaps = 24/232 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
                +  +    ++ +   H++ +P+ ++  S+ LL E         + E++Q      
Sbjct: 379 TRLKEVERLKSEFVMAA--SHELRTPLTSLGMSVGLLLEHAVAGLAERDRELLQAAHEEI 436

Query: 58  MSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEK 108
                 +  +   +    G ++       +  + +                +        
Sbjct: 437 QRMKALVDDLLDLSKIEAGRIELEFESVSVATLFDHAKAVFKNQLEMNGVSLTAELDAAA 496

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +  KI   L      A   + +GG + ++          S++ +G     PE  +
Sbjct: 497 PPVRADANKITWVLTNLISNALRYVGKGGHIALAASVIGPCAHLSVRDDGPGI-PPEFQS 555

Query: 166 QIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I    V+          +       +   +   +  E            L 
Sbjct: 556 KIFQKFVQVQGREAGGTGLGLAICKEIVRAHGGAIWVESAPGQGSKFIFTLP 607


>gi|160941450|ref|ZP_02088786.1| hypothetical protein CLOBOL_06342 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435660|gb|EDP13427.1| hypothetical protein CLOBOL_06342 [Clostridium bolteae ATCC
           BAA-613]
          Length = 480

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 72/239 (30%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           + +N    +        L S I HD+ +PI AI   +E +LD V    E +     +  +
Sbjct: 227 LKENAEDKIQYDKDNKELISNISHDLKTPITAIKGYVEGILDGVASSPEKLDKYIRTIYN 286

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102
               +  +     +   +D+        ++       D                     V
Sbjct: 287 KSNDMDRLIDELTFYSKIDTNKIPYTFSKINVAQYFRDCVEEVGLDMEARGIELGYFNYV 346

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I  + +  +++ N+   +   L +    + I ++D  +     ++ NG      
Sbjct: 347 DEDVVIIADAEQMKRVINNIISNSVKYLDKKKGIINIRIKDVGDFIQVEIEDNGKGIAAK 406

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  R+     +     +  +L K
Sbjct: 407 DLPNIFDRFYRTDSSRNSAQGGSGIGLSIVRKIVEDHGGRIWATSKEGIGTEIHFVLRK 465


>gi|59710722|ref|YP_203498.1| osmolarity sensor protein [Vibrio fischeri ES114]
 gi|59478823|gb|AAW84610.1| EnvZ osmolarity sensory histidine kinase in two-component
           regulatory system with OmpR [Vibrio fischeri ES114]
          Length = 434

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 70/213 (32%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           +  ++   ALL + + HDI +P+  I  + E++  ++  + + +++     +      + 
Sbjct: 220 IQKLEQDRALLMAGVSHDIRTPLTRIRLATEMMSPEDSYLAESMIKDTEECNEIIGQFMD 279

Query: 66  FMRLA-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD    + ++      +    +             +    +++ NL +
Sbjct: 280 YLKPVAKQDFTQVDVNTIVNEVILAEGGYEREIQTKLAMIPKAINGNAVAIKRVITNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDI 181
            A        +V+ SV          ++ NG      +    F     G+     +   +
Sbjct: 340 NAIRYGGDWIQVSTSVSADHKTVWIIIEDNGPGVDNAQLETVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  +++  +      +  + +     
Sbjct: 400 GLAIVKRIVTQHQGEVSLSNRSEGGLKVQVEFP 432


>gi|328470474|gb|EGF41385.1| sensor protein TorS [Vibrio parahaemolyticus 10329]
          Length = 988

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N     S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARNEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLMDSGLNPIQKRYAEIINRSGK 516

Query: 62  IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+               L  + +     +              ++   +
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A      G          + +++ +F +   G      ++
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T              I    +       +       L  +  +         + 
Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691


>gi|317130981|ref|YP_004097263.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475929|gb|ADU32532.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 608

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 66/220 (30%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++ + LE L +  I         + + +  +   I  +  +     
Sbjct: 380 FVANVSHELRTPLTSMKSYLEALADGAINDSEVAPRFIHVTQTETERMIRLVNDLLQLSK 439

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRV-------------QVSWTGEKIDLSRERAKIL 119
                 S+  +        D I     +              V+          +  ++L
Sbjct: 440 MDSKDYSMNVVEINLPQFMDQIIERFEMATKNESISFKRRLTVNTDIIVFGDRDKLTQLL 499

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VES 174
            N+   A    P GG +  S++ +K+  I S+K  G        P  F +    +     
Sbjct: 500 DNILSNAVKYSPEGGTILCSLKIAKDNVIVSIKDEGVGIPKENIPYVFDRFYRVDKARSR 559

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       + H +   +           +S  L 
Sbjct: 560 NLGGTGLGLAIAKEIVHAHGGSIWVSSDWGRGTTISFSLP 599


>gi|167760455|ref|ZP_02432582.1| hypothetical protein CLOSCI_02829 [Clostridium scindens ATCC 35704]
 gi|167661954|gb|EDS06084.1| hypothetical protein CLOSCI_02829 [Clostridium scindens ATCC 35704]
          Length = 585

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRL 55
           N   +   ++ +  L S I H+  + +  I     +  +          +ED ++++   
Sbjct: 353 NDNLHHQRLETIGTLTSGIAHEFNNLLSPIMGYSVMALDVAEGEGEKEDLEDYLVEIYNS 412

Query: 56  SSMSAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +  +  +  +        +      V+    +    + I      +  V V++  E   +
Sbjct: 413 TKNAKTLIRRISDLSRKNSDMTIMQVEFDPLIRKEMEAIIATKPSNMIVNVNYQAEDAMI 472

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKF 164
           +    ++   +      +  ++   G  T  +              ++ NG      E  
Sbjct: 473 TANPMQVSQMVLNLVINSIQAIQEAGNKTGEITVVTSCDTERVSLKVQDNGPGI-SKENL 531

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I +    +        +    V  +  E++  +  +         S    +
Sbjct: 532 EKIYEPFFTTKEAGKGTGLGLAIVQQVVEEHRGTIEVQSEVGTGTTFSITFPR 584


>gi|197122273|ref|YP_002134224.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196172122|gb|ACG73095.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 586

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 76/238 (31%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIED------- 47
           +       + S  L +L  L + I H+I +P+  I    +L    LD+   +D       
Sbjct: 344 LRAAQDQLVRSEKLSSLGKLSASIAHEINNPLAGILTFAKLIVRTLDQGVPDDATRKTLV 403

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101
           + + L++  +      ++ +             + L  + +     ++    +Q      
Sbjct: 404 KHLLLVQRETERCSAIVRNLLDFARERPLTLKDVDLDAVVEEGLQLLSNQINIQNVTLEK 463

Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGN 156
            +           +  +  +N+ M A  ++ RGGK+T+    S +     ++      G 
Sbjct: 464 RLVPLPPVEGDFGQLRQACVNVIMNACEAMARGGKLTVESSASASAGGGWVEIAFTDTGP 523

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I D    +      +    V  +   +  ++  +        ++  L 
Sbjct: 524 GIPPDHLS-KIFDPFFTTKERGTGLGLSVVYGIVERHHGKIEIQSEVGKGTRIAIRLP 580


>gi|119471398|ref|ZP_01613870.1| osmolarity sensor protein [Alteromonadales bacterium TW-7]
 gi|119445674|gb|EAW26958.1| osmolarity sensor protein [Alteromonadales bacterium TW-7]
          Length = 438

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 59/206 (28%), Gaps = 10/206 (4%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           LL + + HD+ +P+  I  + E++ +      + + I          +        +   
Sbjct: 227 LLMAGVSHDLRTPLTRIRLATEMMSDQDE--YLREGIIYDIEDMNGIIDQFIEYLRHHKR 284

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLNLFMVAHASLP 131
            +      +          +  +  +++       S         +++ N+   A     
Sbjct: 285 EELSCEDINALVGEVVNCELKHQRSITFKSNPSIESIPLSSVAIKRVVTNMIENAIRYSD 344

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVIL 188
              +V      +K   + ++  NG      E    F     G+     +   +    +  
Sbjct: 345 GDIEVLSYYNSNKKYVVIAVNDNGPGIPESELESVFEPFKQGDAARGSEGSGLGLAIIKR 404

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +  ++  E   +  +     L 
Sbjct: 405 IVDMHDGKVKLENRPEGGLSAQIYLP 430


>gi|332702284|ref|ZP_08422372.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552433|gb|EGJ49477.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 611

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 60/232 (25%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           + +     + S    A+    S + H+I +P+  +      +                 +
Sbjct: 371 LLEAQEHLVRSERFAAVGEAASHLAHEIKNPLLLMGGFAAQVRRGLAGEDPQAEKLRGKL 430

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWT 105
           Q+I   +      L+ +               +          V  DF        +  +
Sbjct: 431 QIIEDEAKRLETLLREVSGFTKPCKPDLIPQDINQAVLDTVRLVESDFSERGIECVLELS 490

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +   +  ++ +I   L      A  ++P GGK+           + S++  G      E
Sbjct: 491 HDLPAVPFDKNQIQQVLLNLAKNAGEAMPSGGKIHFRSWHQGETVMVSVQDTGMGM-PSE 549

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I      +      +       +  ++   +               L 
Sbjct: 550 VLERIFSPFFTTKAKGTGLGLAVSFRIMEDHGGDIGATSTPGQGSTFVLTLP 601


>gi|325288327|ref|YP_004264508.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963728|gb|ADY54507.1| multi-sensor signal transduction histidine kinase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 595

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 68/225 (30%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             +     S + H++ +P+ +I   ++ L +  + D       + +I + +      +  
Sbjct: 371 EQMRTEFVSNVSHELKTPLTSIRGFIDTLKDGAVNDPEVAGKFLDIIDIEAERLSRLINE 430

Query: 67  M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                       +  +  I Q   +   V     ++ +        + 
Sbjct: 431 ILQLSEIESMKQDRNIEDVFLKPVIDEVFSILQQSAEERKVGLHADIAESVSIQANKDKI 490

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++L+NL   A       G VT+  + +  + + S++  G      E   +I +      
Sbjct: 491 KQLLINLIDNAIKYNIENGSVTVKAEQAGGKVLISVRDTGIGI-EKEYLDRIFERFYRVD 549

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               S +    +    V  + +  + R+  +            + 
Sbjct: 550 RGRSSELGGTGLGLSIVKHIVNLYQGRIDVDSDPGKGTEFKIEIP 594


>gi|119715576|ref|YP_922541.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536237|gb|ABL80854.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 682

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 67/221 (30%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
             S + H++ +PI +I    E+L++     +  E +  +R  + ++   L  +      +
Sbjct: 458 FVSSVSHELRTPITSILGYTEMLEDGVYGDLGREQLDAVRRVAANSTRLLSLINDLLTLS 517

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQ---------------VSWTGEKIDLSRERAKIL 119
              +  IG+ D    +   ++    V                       +       +++
Sbjct: 518 RVQEDEIGIVDRVFDLRSVVSAGTAVVAPTLERRSLELTAELPDEPVPFLGDRDMLERVV 577

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173
           +NL   A    P GG++ + +     E++  +   G      ++  ++            
Sbjct: 578 INLAGNAAKFTPEGGRIGVRLLVGPEESVIEVSDTGIGI-PHQEQERLFSRFFRSSLAQE 636

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I    +       +  ++   +  +            L 
Sbjct: 637 RAIPGSGLGLSIAHAIVEKHGGTMSVDSEPGEGTTFRVHLP 677


>gi|323702184|ref|ZP_08113851.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532871|gb|EGB22743.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 479

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 68/216 (31%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+  I  ++ L+      E  I +E +  I   +      +  M +   
Sbjct: 252 FVADVSHELRTPLTTIRGNIALIRKMGDAEPQIREEALADIASEAERMSRLVSDMLVLAR 311

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-----------AKILLN 121
               +   +    ++ +IE      K +      +    +               +++L 
Sbjct: 312 ADAGLTLQLQPTAVQPLIEQIKRQAKLLAKDINFQVHMETACEKTLIMADPDYLRQLILI 371

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178
           L   A       G V ++V+   ++   ++K  G      E    F +    +    +  
Sbjct: 372 LLDNAFKFTAANGTVELAVKCGGDQVEVAVKDTGMGISPAELEHIFERFYRSDKSRPVGG 431

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A ++K ++  E       V    L 
Sbjct: 432 TGLGLSIARWIAAQHKSQITVESTVGQGSVFKVTLP 467


>gi|320354129|ref|YP_004195468.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122631|gb|ADW18177.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 520

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI- 61
           +   +SS  + ++  + + I H+I +P+G I    +L+ +   +D               
Sbjct: 275 MEQLVSSEKMASVGQMAAGIAHEINTPLGIILGYAQLMMDDFDKDSETYQNLEVIERQTK 334

Query: 62  -------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110
                    LK+ R +     +VD    + D   + E  + +     +          + 
Sbjct: 335 ASRKIVADLLKYSRQSGSARETVDVNEIIEDAVAITEHSLNLSHIKVLLTLAPDLPPIVG 394

Query: 111 LSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              +  ++++NL   AH ++   G     +         + I  ++ +G+         +
Sbjct: 395 DPEKLRQVVVNLINNAHHAMEGQGSGELHLATRFDRQTGKVIAEVRDSGHGI-PEHIKAR 453

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH-------NVVLSALLE 214
           I D    +        +       +  E+   +  E              +    L 
Sbjct: 454 IFDPFFTTKPVGKGTGLGLSVSYGIIQEHGGTIEIESPVSGPAGTQLPGTLFRLALP 510


>gi|320107428|ref|YP_004183018.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319925949|gb|ADV83024.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 448

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 61/226 (26%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIRLSSMSAIIRLKFM-- 67
             + + H++ +P+ +I   +E L E             + +  I  ++       + +  
Sbjct: 220 FVANVSHELRTPLTSIAGYVETLLEDPRLGVPNKGSARDFLGSIARNAARMTRLTEDLLA 279

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 +        VD+   + D       FI   + V    T     +  +   I+  
Sbjct: 280 LARIESKEHQVKPAPVDTNTLIHDALDATSGFIREKEAVMDFGTLTSEMIYADAGAIVQV 339

Query: 122 LFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
           L  +   ++                + +D+     FS+  NG           F +    
Sbjct: 340 LSNLIENAVNYGSSANGARIVIAVDASRDTPGMMQFSITDNGPGIASEHLERVFERFYRV 399

Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    I      +       +  ++   +  E         S  L 
Sbjct: 400 DQARAIGTHGTGLGLAIARNIVEQHGGTIWVESRLGKGSRFSFTLP 445


>gi|298377731|ref|ZP_06987682.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298265434|gb|EFI07096.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 622

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 58/229 (25%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +AK        +   +   + + H+I +P+ AI    +LL   ++  +    + LI++++
Sbjct: 387 LAKEKAEEADMLK--STFLANMTHEIRTPLNAIVGFSDLLGVEEDSELRQNYISLIKMNN 444

Query: 58  MS----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              M         + S +        +     V+  +       
Sbjct: 445 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLDACPDII 504

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166
                    +I +NL   A     +G        +  +    F +   G      E    
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTLEAEEKMIKFYVSDTGCGIPKDELDNI 564

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S  +    +       L  +    +     +         L 
Sbjct: 565 FARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613


>gi|229167896|ref|ZP_04295627.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621]
 gi|228615536|gb|EEK72630.1| hypothetical protein bcere0007_28560 [Bacillus cereus AH621]
          Length = 448

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +A N      S+     +     S + H+  SP+ +I    + L             +++
Sbjct: 211 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 270

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105
           I   S       K +            L       Q        + ++   +K + V + 
Sbjct: 271 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFD 330

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              I +  +     ++  N+F  +      GG +   V++ ++  + S+  NG      E
Sbjct: 331 VPDIFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGM-EQE 389

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +I D            ++   +    V  +   +   +           +   L K
Sbjct: 390 EMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHNGTVSVYSTKGEGTTVRVELPK 448


>gi|28900530|ref|NP_800185.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633]
 gi|260365411|ref|ZP_05777948.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030]
 gi|260877477|ref|ZP_05889832.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034]
 gi|260894852|ref|ZP_05903348.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466]
 gi|28808910|dbj|BAC62018.1| sensor protein TorS [Vibrio parahaemolyticus RIMD 2210633]
 gi|308085317|gb|EFO35012.1| TMAO reductase sytem sensor TorS [Vibrio parahaemolyticus Peru-466]
 gi|308090921|gb|EFO40616.1| sensor histidine kinase TorS [Vibrio parahaemolyticus AN-5034]
 gi|308114304|gb|EFO51844.1| sensor histidine kinase TorS [Vibrio parahaemolyticus K5030]
          Length = 988

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N     S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARNEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLMDSGLNPIQKRYAEIINRSGK 516

Query: 62  IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+               L  + +     +              ++   +
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A      G          + +++ +F +   G      ++
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T              I    +       +       L  +  +         + 
Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691


>gi|95931397|ref|ZP_01314107.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132553|gb|EAT14242.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 497

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 78/230 (33%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  + ++  L S I H++ +P+ A    LELL +   E +   LI  +  
Sbjct: 263 LKQTRQHLAHSERIASIGNLTSGIAHELGNPLSASIGYLELLKKRCEEPKNRDLIERALN 322

Query: 59  SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +    + +             G+     S +     + +++     ++ +   W  +  
Sbjct: 323 ESHRMDQLIKDLLDFAAPDHESGHANCAPSDVLKHSCDMLLQQGALKERHLSTDWPEQLS 382

Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  ++L+NL + A  +    G +TI+  ++ ++    ++ NG+          
Sbjct: 383 HVSIPPIKLQQVLVNLILNARDATDSYGAITITATENDSKITIKVEDNGHGIEGQSL-ET 441

Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +        +  Y    L H+ +  L            +  L 
Sbjct: 442 IFDPFYTTKAPGKGRGLGLYVSYQLVHDARGELQATSTQGKGSCFTVTLP 491


>gi|323487713|ref|ZP_08092971.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323398447|gb|EGA91235.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 608

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 59/219 (26%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+  + + LE L      +  +    + + +  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTTMRSYLEALADGAWQDPDLAPNFLNVTQTETERMIRLVNDLLKLSK 440

Query: 73  Y------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLN 121
                           +     +    ++   +V                  +  +++ N
Sbjct: 441 MDSSETELSKEMVEFNVFFNRIIDRFEMSKSHKVNFMRQLPKEQYFVEIDPDKLTQVIDN 500

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P GGKV  ++   +   +  +   G      E   +I D            
Sbjct: 501 IISNALKYSPEGGKVRFNMTVEEGYLLIQISDEGMGI-PKENVDRIFDRFYRVDRARSRE 559

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       + + +   +  E        +   L 
Sbjct: 560 MGGTGLGLAISKEMINAHGGVIWAESKLGKGTSIFFTLP 598


>gi|168699625|ref|ZP_02731902.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 633

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 79/237 (33%), Gaps = 24/237 (10%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIR 54
            + +   L  S  + A+  L   + HD  + +  I+   +LL +         + +Q + 
Sbjct: 255 RRRLEAQLRQSQKMEAVGRLAGGVAHDFNNLLTVINGYTDLLLKGAALDAGTRDSLQEVY 314

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +           L F R +      VD    +  +  ++   I  D  + V   G    
Sbjct: 315 AAGKRAAGLTRQLLVFSRRSVAVACRVDLNDVVRGLVPMLGRLIGEDIELTVRAAGGLWP 374

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDS-------KNENIFSLKINGNLARF 160
           +  +     ++++NL + A  ++PRGG++T+   ++           + +++  G     
Sbjct: 375 IRADTGLIEQVVVNLCVNARDAMPRGGRLTVETWNAVLSGERAGEYAVLAVRDTGTGI-A 433

Query: 161 PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    I +    +        +    V  + H+    L  +            L +
Sbjct: 434 ADVLPHIFEPFFTTKGPDRGTGLGLSTVQGIVHQFGGHLGVDSELGKGTTFRVQLPR 490


>gi|183221501|ref|YP_001839497.1| putative two-component sensor histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911587|ref|YP_001963142.1| two component response regulator sensor histidine kinase subunit
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776263|gb|ABZ94564.1| Sensor histidine kinase of a two component response regulator
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167779923|gb|ABZ98221.1| Putative two-component sensor histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 424

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50
           + +     + +  L +L  L + I H+I +P+  I      + +            +  +
Sbjct: 187 LKERQDQLVEAEKLASLGLLSAGIAHEINNPLNFITGGYYGIKDFIQSTGIQSEKTEMYL 246

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------- 103
             I++        +K +        S D  I + ++ +     +    R ++S       
Sbjct: 247 DAIKVGVERTTKIVKGLNQYTRTGDSFDEKIDIEEMLENCLVILFHTFRDKISVEKEFDS 306

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPE 162
                   S +  ++ LNL   A  S+     K+ IS +   +  + +++  G      E
Sbjct: 307 EPVFIQGNSGKIHQVFLNLLTNAIQSMENKRGKLLISAKSEGDFVLVTIQDTGTGI-RKE 365

Query: 163 KFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              QI      +        +       +  E+   +  E         +  L K
Sbjct: 366 HLNQIQIPFFTTKEPGKGVGLGLSIAYKILKEHSASIDVESEWGEGTKFTIRLPK 420


>gi|158335122|ref|YP_001516294.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
 gi|158305363|gb|ABW26980.1| two-component signal transduction sensor histidine kinase
           [Acaryochloris marina MBIC11017]
          Length = 927

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 54/226 (23%), Gaps = 23/226 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
              +   + + H++ +P+ AI    E+L+E   +      +      +      + L   
Sbjct: 423 KSKSEFLANMSHELRTPLNAIIGYSEMLEEDAEDMGQDDFVPDLQKISGSAKHLLELINA 482

Query: 73  YTGSVDS---------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                                  +       +          + +        L  ++ K
Sbjct: 483 VLDLSKVEAGRMELYLESFEIAPMVKTIAATLQPIADKQSNMISLHCPENIGTLYADQTK 542

Query: 118 ILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----D 169
           +  +L+     A      G       +D+  E +FS+K  G      +           D
Sbjct: 543 VRQSLYNLLSNACKFTESGEVSLTISEDAGEEVVFSIKDTGIGMTPEQLEKVFKAFTQAD 602

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +         +               +       +    +  L +
Sbjct: 603 ASTTRKYGGTGLGLTITKQFIEMMGGHISVTSQYGYGTEFTIHLPR 648


>gi|197118519|ref|YP_002138946.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087879|gb|ACH39150.1| sensor histidine kinase, Cache, PAS, PAS, PAS and PAS
            domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 1260

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 66/244 (27%), Gaps = 32/244 (13%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
             K +   L  +  + A+  L   + HD  + +  I    +LL              ++++
Sbjct: 876  RKKLEEQLRQAQKMEAIGQLAGGVAHDFNNILTVIMGFGQLLQHSLPAGDPMLESMEQIL 935

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 ++      L F R        V+         + +   I  D  ++  +  EK+ 
Sbjct: 936  DAADRATHLTRSLLAFSRKQVMLLHQVELSDLARKHAKFLVRIIGEDVTLKTYFCEEKLM 995

Query: 111  LSRERAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLK 152
            +  +  +I   L      A  ++P                               + ++ 
Sbjct: 996  VMADSGQIEQVLMNLATNARDAMPGGGELTIKTEAVQLDEEFHRMHGYGMPGRYALITVT 1055

Query: 153  INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              G     PE   +I +    + +      +    V  +  ++   +            S
Sbjct: 1056 DTGTGM-DPETQQKIFEPFFTTKLPGRGTGLGLSIVYGIIKQHGGYVTIFSQRGFGTTFS 1114

Query: 211  ALLE 214
              L 
Sbjct: 1115 IYLP 1118


>gi|86360537|ref|YP_472425.1| two-component sensor histidine kinase [Rhizobium etli CFN 42]
 gi|86284639|gb|ABC93698.1| two-component sensor histidine kinase protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CFN 42]
          Length = 902

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 56/233 (24%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------RLS 56
                  +  L + L + I HD+ +P+ AI  +   L +                    S
Sbjct: 659 RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRSDLLSTVVDES 718

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                     + +    +G+++    L     ++   +A   ++      E    +    
Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGTALARAAKILEHHKTEMSIPAELPM 778

Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A    P G  + I      +  +  +   G      +     
Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPEGSVIQIEGWADADNVVVQISDEGPGIPPADLARVF 838

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215
                    D       +               +           V +  L K
Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTITAGNRRGRPGAVFTIRLPK 891


>gi|323497025|ref|ZP_08102048.1| osmolarity sensor protein [Vibrio sinaloensis DSM 21326]
 gi|323317869|gb|EGA70857.1| osmolarity sensor protein [Vibrio sinaloensis DSM 21326]
          Length = 439

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 64/209 (30%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++   +  + + ++      +      + +++ 
Sbjct: 224 EEDRALLMAGISHDLRTPLTRIRLATEMMSPQDSYLAEGIIGDTEECNEIISQFMDYLKP 283

Query: 70  AFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
               +   VD      D+      +    +        E +       + + NL + A  
Sbjct: 284 VNKQSFIEVDLNDIAEDVASSEGGYEVQIETEFHHPMKETLGSPIAIKRAVSNLVVNALR 343

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 KV+  V          ++ NG      +    F     G+     +   +    
Sbjct: 344 YGNGWVKVSTGVTADSKLVWVCVEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGLGLAI 403

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++        + +     
Sbjct: 404 VKRIVSQHNGSVIVNNRSGGGLKVQISFP 432


>gi|314935218|ref|ZP_07842571.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656553|gb|EFS20292.1| sensory box histidine kinase VicK [Staphylococcus hominis subsp.
           hominis C80]
          Length = 608

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +    + + R  +   I  +  +     
Sbjct: 378 FVANVSHELRTPLTSMNSYIEALEEGAWKDENLAPSFLSVTREETERMIRLVNDLLQLSK 437

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNL 122
                + +        +  + I     +            + T        +  ++  N+
Sbjct: 438 MDNETEQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPNETIFTEIDPDKMTQVFDNV 497

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 498 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 557

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 558 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 596


>gi|168698166|ref|ZP_02730443.1| integral membrane sensor signal transduction histidine kinase
           [Gemmata obscuriglobus UQM 2246]
          Length = 496

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 19/232 (8%), Positives = 56/232 (24%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55
            +     L +  L     + + I H+I +P+ AI   ++   +         + + +I  
Sbjct: 251 RQVERDALRAEQLAWVGQMAAGIAHEIRNPLMAIKILIQTAADPLGLSPFRAKDLAVIER 310

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
                   +                  L  + +     +          + +    E + 
Sbjct: 311 EIGRLEHTVTGFLDFARPPRPERQATDLRSLLEQAVAGLQARADRQKVALGIEVPAEPVT 370

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKINGNLARFPE 162
           L  +  +    ++ + + ++                       E +  +   G       
Sbjct: 371 LLVDPNQFGQVVYNLLYNAIDAQPGGGRVRISVEAATREGGGPELVLRVADEGAGLPAA- 429

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D  V +      +       +   +   +          V +  L 
Sbjct: 430 VGERIFDPFVSTKETGLGLGLSICRRIVEAHGGTIRAGSPPAGGAVFTVRLP 481


>gi|139439273|ref|ZP_01772715.1| Hypothetical protein COLAER_01731 [Collinsella aerofaciens ATCC
           25986]
 gi|133775297|gb|EBA39117.1| Hypothetical protein COLAER_01731 [Collinsella aerofaciens ATCC
           25986]
          Length = 541

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 67/239 (28%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------------- 45
            +       +  L A L   I HD+ +P+ +I  + ++L + G                 
Sbjct: 295 REEAAVLAKNEQLRANLLRSISHDLRTPLTSISGNADVLLDQGSTGTAVLDAQTRRGLLL 354

Query: 46  ----EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
               +   +     + ++                 +D ++                K V 
Sbjct: 355 SIRSDALWLNATVENLLAITKLEGGGMRLSTTLELMDDIVEEALRHVNPAVREHDLKVVP 414

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   ++++NL   A    P G  + IS+         S+  +G     P
Sbjct: 415 CDEPALVNVDARLMVQLVVNLVNNAVTYTPAGSHIVISIGVDGGHVTCSVADDGPGI-AP 473

Query: 162 EKFTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    +         S  +       +A  +   +     D H  V +  L 
Sbjct: 474 EDRERIFESFYTANHGLADSHRSVGLGLSLCRSIALAHGGSIEVAAADPHGSVFTIELP 532


>gi|320353586|ref|YP_004194925.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
 gi|320122088|gb|ADW17634.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
          Length = 481

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 71/232 (30%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQL 52
           + +     + +  L +L  L + + H + +P+  I  S ++  +            ++  
Sbjct: 239 LERRQDQLIQAEKLSSLGTLTAGVAHQLNNPLNNISTSCQIAVDEFDSGDVPLLKRMLTN 298

Query: 53  IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107
           I   ++ A       L+F R        +     +     + +  +     + +    + 
Sbjct: 299 IDQETLRARDVVKSLLEFSRAQDFCLREIQLAEVVSKAVLLAKSQVPPQIAMTIDIPRDL 358

Query: 108 -KIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                 +   ++ +NL + A  ++       +  ++  + +E +  +   G      E  
Sbjct: 359 VFSIDVQRMQEVFINLIINAAQAIEGEGRISIEAALDAAADEVVIEVSDTGAGI-SEENQ 417

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +        +    V  +  +++  +  +            L 
Sbjct: 418 ARVFDPFFTTKEAGQGTGLGLSVVYGIIQKHQGTITVQSTPGQGTSFVIRLP 469


>gi|251771346|gb|EES51927.1| integral membrane sensor signal transduction histidine kinase
           [Leptospirillum ferrodiazotrophum]
          Length = 458

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS 59
                L          +R+ H++ +P+ AI    +L+    D      +  + I ++S  
Sbjct: 212 RHEMALLRERARQEFFARMSHELRTPLNAITGYSQLILSGEDREKESGQDAEKILIASRH 271

Query: 60  AIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFI----AVDKRVQVSWTGE 107
               +  +                       + +   ++   I          +V   G 
Sbjct: 272 LEALIDDLFDMAKIGNRKLLLEPRPFRLEELVEEAADMLRPAIEGSGNRLVVRRVPLEGP 331

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-RFPEKFTQ 166
            +   R   +IL+NL   A      G     S  D    + F + ++       P++ ++
Sbjct: 332 VVTDRRRVRQILINLLENARKFTDHGEIRLSSSPDPDAPHFFRVIVSDTGIGMTPDQTSR 391

Query: 167 IVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I +   ++            +       LA      +  E         +  L K
Sbjct: 392 IFEPFTQADENTRLRYGGTGLGLAISRSLARLMGGTITVESHPGKGSSFTLRLPK 446


>gi|190895523|ref|YP_001985815.1| two-component sensor histidine kinase protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CIAT
           652]
 gi|190699468|gb|ACE93552.1| two-component sensor histidine kinase protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli CIAT
           652]
          Length = 902

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 56/233 (24%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLS 56
                  +  L + L + I HD+ +P+ AI  +   L +                 +  S
Sbjct: 659 RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRADLLSTVVDES 718

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                     + +    +G+++    L     ++   +A   ++      E    +    
Sbjct: 719 ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGTALARAAKILEHHKTEMSIPAELPM 778

Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A    P    + I      +  +  +   G      +     
Sbjct: 779 VRVDPVLFEQVIFNLLDNAAKYAPERSVIQIEGWADADNVVVQVSDEGPGIPPADLARVF 838

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215
                    D       +               +           V +  L K
Sbjct: 839 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTIAAGNRRGRPGAVFTIRLPK 891


>gi|223938486|ref|ZP_03630379.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223892905|gb|EEF59373.1| PAS/PAC sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 392

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 59/219 (26%), Gaps = 24/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYTG 75
             + + H++ +P+  I   +E L +   ++  +  + +             +      + 
Sbjct: 172 FVANVSHELRTPLSLIKGFVETLIDGAKDNPELCTRFLGTIEKHTDRLTFLIEDLLTISK 231

Query: 76  SVDSLIGLGDIEQVIEDFIAVDK--------------RVQVSWTGEKIDLSRERAKILLN 121
                I +   E  + + +                  +  ++   +    +    ++L N
Sbjct: 232 LESGQIVMNLNEVNLNNEVGRAVDDLQSRASGKNVKLQNTLAEDLKARADADRLQQVLFN 291

Query: 122 LFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           L   A      GG VTI  +    ++    +K +G      E   ++ +           
Sbjct: 292 LIENAIKYGRTGGNVTIGGKALPGDKVEIWVKDDGPGI-PDEARERVFERFYRVDRARSR 350

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +    V  +   +   +               L
Sbjct: 351 ETGGTGLGLAIVKHIVQAHGGEVWVSSEPGQGTTFYFTL 389


>gi|288555765|ref|YP_003427700.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288546925|gb|ADC50808.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 378

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 61/227 (26%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           + K     L     M+ V+ + + + H++ +P+  I   ++L    G  ++    +    
Sbjct: 147 LQKQFEHLLTFHHQMEAVSHIAAGVAHELRNPLSVIKGFMQLAKLTGDHEKYYDTVISEL 206

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKID 110
                 ++                    +E +IE   A      V               
Sbjct: 207 NRMNSIIEDFLSVSRKKIDRKKQSPAHIMESLIEIMKAECLLHDVELTLNIEEADRHVYA 266

Query: 111 LSRERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 +++LNL   +  +        K +I      +     +  NG      E   Q+
Sbjct: 267 NESMVKQVMLNLLRNSIEAYGGSNTARKFSIHAAACDSVYRVIISDNGKGM-PDEVLEQL 325

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      I       +  ++    + E        +S  L 
Sbjct: 326 GKPFFTTKESGTGIGIPLCKKIIEDHGGEFIIESKLSVGTTVSLTLP 372


>gi|322421384|ref|YP_004200607.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320127771|gb|ADW15331.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 699

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 67/242 (27%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           MA+ +  +   M+ +  + S + HD  + + AI     L    L+      + +  + L+
Sbjct: 444 MAEQLRQS-QKMEAIGEVASGVAHDFNNLLTAIAGFATLAQANLERDTASYQYLDEVLLT 502

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----- 111
           S  A    + +               L  + + IE  +      Q+       +      
Sbjct: 503 SERATYLTRGLLAFGRKESPHPEPADLNVVVERIEKLLRRLMSQQIELRISLCEGALTVL 562

Query: 112 --SRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154
                  ++++NL   A  ++   G + I                     +    S++ +
Sbjct: 563 AAPGRIDQVIMNLATNARDAMDNAGIIRIETAMAEIGPDFVTGRGAGAPGSYARLSVRDS 622

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          ++ +    +        +    V  +  ++   +               
Sbjct: 623 GKGM-DEATRARLFEPFFTTKGVGKGTGLGLSIVHRIVQQHGGFIDIASTPGAGASFDVY 681

Query: 213 LE 214
           L 
Sbjct: 682 LP 683


>gi|322421480|ref|YP_004200703.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127867|gb|ADW15427.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 580

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 72/242 (29%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIR 54
           + ++    L++ +     +   + + H++ +P+ ++    E+L +     + ++  + + 
Sbjct: 337 LRESEIARLAAEEACRTKSDFLANMSHELRTPLNSVIGFSEVLQDELYGPMNEKQREYVN 396

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGL----------------GDIEQVIEDFIAVDK 98
              +S    L  +      +      + L                   E+ +   + +  
Sbjct: 397 NIHISGRHLLSLINDILDLSKVESGKMELELSAFSLRDMLGDSLAMFKEKALRSAVGIHL 456

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                     +   R+  +I+ NL   A    P GG + +S +   +    ++   G   
Sbjct: 457 EFDPEADANIMADQRKLKQIMFNLLSNAIKFTPAGGTLQVSARRMPDFVEIAVADTGIGI 516

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +  +   ++               +   +       L   +  R+  +         S  
Sbjct: 517 KAQDIP-KLFKPFTQLGSVYTKGFEGTGLGLALSKRLVELHGGRIRVKSKFGTGSRFSFT 575

Query: 213 LE 214
           + 
Sbjct: 576 IP 577


>gi|253568655|ref|ZP_04846066.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251842728|gb|EES70808.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 513

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 66/231 (28%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +++ + G E+E  + +++ S + 
Sbjct: 276 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMICQTGEEEEKQEYMKIVSSNN 335

Query: 61  IIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
            + L+ +      +               +  L +              V +++      
Sbjct: 336 ELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQMQEKNTSPDVAITFTEKAEE 395

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A    P+G        D   +   F +K  G      +  
Sbjct: 396 CILNTDRVRLSQVIINFTNNAMKFTPKGSIQMGYRIDEAKDEIYFYVKDTGIGIPADKIN 455

Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +      +      ++       +  +  +         L 
Sbjct: 456 EVFERFVKLNTFAKGTGLGLAICRVIVERLGGTIGADSKEGEGSCFWFRLP 506


>gi|228900581|ref|ZP_04064803.1| hypothetical protein bthur0014_17840 [Bacillus thuringiensis IBL
           4222]
 gi|228859064|gb|EEN03502.1| hypothetical protein bthur0014_17840 [Bacillus thuringiensis IBL
           4222]
          Length = 351

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ +      +  +G      +    
Sbjct: 234 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADSSRNRASGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 346


>gi|229095302|ref|ZP_04226294.1| hypothetical protein bcere0020_5590 [Bacillus cereus Rock3-29]
 gi|228688161|gb|EEL42047.1| hypothetical protein bcere0020_5590 [Bacillus cereus Rock3-29]
          Length = 463

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 66/219 (30%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVKGYADIALKESTPSEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVIV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ +       +++  G      +                 +
Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   ++     D+       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNIIVTSEVDYGSCFIISLP 454


>gi|220915723|ref|YP_002491027.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953577|gb|ACL63961.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 516

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
           + +     L +  L A+  + ++I H+I +P+ AI  + ELL E                
Sbjct: 270 LDRQRADLLRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEEIAALPAPPAEATGLV 329

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105
                         +                 L +I       +  +  A    V  +  
Sbjct: 330 SAISREVDRLNAVTEEYLRFARLPRPQLERHDLNEILGGLLDFLGPELAAARVAVHRALA 389

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160
                +  +  ++          +  ++P GG VT+  + + +      +    G     
Sbjct: 390 PGLPGVRCDEGQLRAVFLNLLRNSREAMPGGGTVTVVTRRADSGAAVEAELGDTGGGIPP 449

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I +    +      +   +   +  E+   +  E       + +    
Sbjct: 450 GDLT-RIFEPFYSTKERGTGLGLAFTQQVVEEHGGTIRCESTVGRGTIFTLRFP 502


>gi|160884048|ref|ZP_02065051.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483]
 gi|156110390|gb|EDO12135.1| hypothetical protein BACOVA_02022 [Bacteroides ovatus ATCC 8483]
          Length = 400

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 62/220 (28%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI    +L+        +++  ++I  +S   +     
Sbjct: 178 ESDRLKSAFLANMSHEIRTPLNAIVGFSKLITYATSAEEKNQYSEIIERNSEMLLNLFND 237

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      ++        +D  + L                  V+            
Sbjct: 238 ILDLASLEADSLKFNIRPIKLIDICLQLEQQFCHKTQNGVKLILDDVNTDMYTSGDWNRI 297

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +I+ NL   A    P+G  +    ++ ++   F +K +G         T          
Sbjct: 298 IQIISNLLSNATKFTPKGE-IHFGYREKEDFVEFYVKDSGIGIPAARIATIFRRFGKVND 356

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +L  +   R+     +         L 
Sbjct: 357 FVQGTGLGLTLCRMLVEKMGGRIWLRSQEGQGSRFYFTLP 396


>gi|118581133|ref|YP_902383.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118503843|gb|ABL00326.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 568

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 69/237 (29%), Gaps = 28/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           AK    +   +    L  + + H++ +P+ +I     +L +         + + + +++ 
Sbjct: 330 AKERAESADHLKSAFL--ATMSHELRTPLNSIIGFTGILLQGLSGPINDEQAKQLGMVKN 387

Query: 56  SSMSAIIRLKFMRLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106
           S+   +  +  +               +       I +V++    + ++  +  +     
Sbjct: 388 SANHLLSLISDVLDISKIEAGQLKVEHEPFDLRESILKVVQSVRPLAEKKGLDLSCDLAE 447

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   +R   ++LLNL   A     +GG      ++        ++ +G   +  E 
Sbjct: 448 QVGNISGDARRVEQVLLNLLSNALKFTEQGGVRVSCGREGDAFLTS-VRDSGIGIKDEEL 506

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++               +   +       L       +  E         +  L 
Sbjct: 507 -ERLFKPFHQVDTGLSRKYEGTGLGLSISKKLVELMGGEIRVESSPGKGSTFAFTLP 562


>gi|86158433|ref|YP_465218.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774944|gb|ABC81781.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 584

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 73/236 (30%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIED------- 47
           +       + S  L +L  L + I H+I +P+  I    +L    LD+   +D       
Sbjct: 344 LRAAQDQLVRSEKLSSLGKLSASIAHEINNPLAGILTFAKLIVRTLDQGVPDDATRKTLV 403

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101
           + + L++  +      ++ +             + L  + +     ++    +Q      
Sbjct: 404 KHLLLVQRETERCSAIVRNLLDFARERPLTLKDVDLDAVVEEGVQLLSNQINIQNVTLEK 463

Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA 158
            +           +  +  +N+ M A  ++ RGGK+T+     +       +    G   
Sbjct: 464 RLVPLPPVEGDFGQLRQACVNVIMNACEAMARGGKLTVESALVEGGRWVEVAFTDTGPGI 523

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I D    +      +    V  +   +  ++           ++  L 
Sbjct: 524 APAHLS-KIFDPFFTTKERGTGLGLSVVYGIVERHHGKIEIHSEVGKGTRVAIRLP 578


>gi|75762529|ref|ZP_00742387.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489992|gb|EAO53350.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 282

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 48  MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 104

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 105 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 164

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ +      +  +G      +    
Sbjct: 165 HVTADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRICDSGIGISEEQKQHI 224

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 225 FERFYKADSSRNRASGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 277


>gi|319940602|ref|ZP_08014945.1| hypothetical protein HMPREF9464_00164 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805968|gb|EFW02726.1| hypothetical protein HMPREF9464_00164 [Sutterella wadsworthensis
           3_1_45B]
          Length = 586

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56
           +++  ++    +   L S + H++ +PI A+    E L       E      +  +   +
Sbjct: 353 RDVSQDVQVEQIKDRLISVVAHELKTPITALRLQAETLATQIGIGEEERSQILQDMQDEA 412

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEK 108
                +   ++ ++    G V     +  I   I+    +              +     
Sbjct: 413 FRLRSLVDDWLDISRLEEGKVQLQRRIMHIATPIDRAAKIVNARYPITVTRSIDTEAECF 472

Query: 109 IDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                   ++ +NLF  A           V ++V    +     +K NG      +    
Sbjct: 473 RFDPERITQVFINLFNNAARYHREGADPCVHVTVTKEGDWVAIRVKDNGVGIAKSKMPYI 532

Query: 167 IVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +    V  +   +   +            + +L 
Sbjct: 533 FEHFFQADMSIARRRGGTGLGLAIVKGIVDVHGGTISVASEVGVGTEFTLVLP 585


>gi|295106297|emb|CBL03840.1| Signal transduction histidine kinase [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 554

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 61/224 (27%), Gaps = 26/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           +   + + H++ +P+ +I    ELL       +    +   ++   S    ++    + +
Sbjct: 325 SEFLAMMSHELRTPLTSIIAFTELLNRNSEPADEKEAETRREIEANSRALLLMINDILEM 384

Query: 70  AFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL- 120
           +    G ++                  V                 +   ++ +  K+   
Sbjct: 385 SRLDAGRIEMNRETVDLGDIAGMVQAVVQPLANRKGIAFACEIDPDVPLVTADFEKLRHV 444

Query: 121 --NLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV---- 172
             NL   A    P GG V +S+            +   G      +   +I D  V    
Sbjct: 445 LENLCGNAVKFTPEGGDVRLSISWHPECGQVWLRVADTGIGIAKKD-QRRIFDRFVQADS 503

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +        A  +   +  E    H  V +  + 
Sbjct: 504 SASRRYNGTGLGLSLAKEYAEMHGGTISVESELGHGSVFTVRIP 547


>gi|212703052|ref|ZP_03311180.1| hypothetical protein DESPIG_01090 [Desulfovibrio piger ATCC 29098]
 gi|212673640|gb|EEB34123.1| hypothetical protein DESPIG_01090 [Desulfovibrio piger ATCC 29098]
          Length = 566

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 73/233 (31%), Gaps = 25/233 (10%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDE----------- 48
              L S  + AL  + + + H++ +P+  I  +     +LL +   ++            
Sbjct: 321 ARMLQSSKMAALGKMAAGVAHEVNNPLMLIQENAGWIRDLLQDENPKNMVNYDEIMESTD 380

Query: 49  -VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTG 106
            + + ++ +       L F R        +   + +    E +  +    +  ++  ++ 
Sbjct: 381 KIEKHVQRAKGITQRMLGFGRRMNPGRSEIMVNVLVDQATEFLKTEARGRNIAIEKEFSA 440

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   +  + A++          A  ++ + G +T+  +  +N      K  G      E 
Sbjct: 441 DVPVILSDSAQLEQVFINIIDNAIDAIGKNGSITVRTEPWENGARIYFKDTGPGM-DEET 499

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +    +   +       +  +   R+    +          L 
Sbjct: 500 MQRIFDPFFTTKAVGEGTGLGLAICFTILEKLGGRIEVNSVVGQGTTFCISLP 552


>gi|257060613|ref|YP_003138501.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256590779|gb|ACV01666.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 763

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 67/242 (27%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHN----------------------SLE 38
           +   +    S+    +   S + H++ +P+  I                         L+
Sbjct: 372 LRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQ 431

Query: 39  LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
            + + G     M    L           + +           I     ++ ++  I +  
Sbjct: 432 TIQDSGKHLLEMINEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQL 491

Query: 99  RVQVSWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            +Q+               +IL +L   A    P GG V + +    NE IF ++  G  
Sbjct: 492 ELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWREGNEAIFQVEDTGIG 551

Query: 158 ARFPEKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +        Q ++ +   T     +       L   +   +  E +     + +  
Sbjct: 552 IAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVESVLQEGSIFTVR 611

Query: 213 LE 214
           L 
Sbjct: 612 LP 613


>gi|161617312|ref|YP_001591277.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161366676|gb|ABX70444.1| hypothetical protein SPAB_05163 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 527

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 302 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 361

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 362 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 421

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 422 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 480

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 481 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 520


>gi|149178901|ref|ZP_01857479.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797]
 gi|148842240|gb|EDL56625.1| sensory box sensor histidine kinase [Planctomyces maris DSM 8797]
          Length = 592

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 58/235 (24%), Gaps = 25/235 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
                L S  L     + + H++ +P+ +I    E L     D+  I    +  I   + 
Sbjct: 359 TELRRLES--LRQEFVANVSHELKTPLSSIKAYTETLIRGAMDDPEINKTFLLRIEEQAD 416

Query: 59  SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +            F              +    +   +    + +  +   I
Sbjct: 417 RLHQLILDLISLASIESGNQVFDIINIELRPFVESCLVDQQKVAESKQIELLIEESEPGI 476

Query: 110 DLSRER---AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLA---RFPE 162
            +  +     +IL NL   A    P          ++  N  +  ++  G          
Sbjct: 477 KVKADEEGLHQILGNLINNAIKYTPDQGRITIRWQREEGNMVLLQVQDTGIGIAEKYQAR 536

Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +    +      +    +    V  L       +            S  L +
Sbjct: 537 LFERFFRVDKARSRELGGTGLGLSIVKHLVQSFNGTIGVTSKVGEGSTFSVRLPR 591


>gi|329725290|gb|EGG61777.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21189]
 gi|329730872|gb|EGG67250.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21193]
          Length = 592

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 374 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 433

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 434 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 493

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 494 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 553

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 554 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 590


>gi|329314169|gb|AEB88582.1| Sensor protein srrB [Staphylococcus aureus subsp. aureus T0131]
          Length = 564

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 346 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 405

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 406 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 465

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 466 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 525

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 526 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562


>gi|304380924|ref|ZP_07363583.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|304340510|gb|EFM06445.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
          Length = 421

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 203 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 262

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 263 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 322

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 323 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 382

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 383 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 419


>gi|283770562|ref|ZP_06343454.1| two-component system OmpR family sensor histidine kinase ResE
           [Staphylococcus aureus subsp. aureus H19]
 gi|283460709|gb|EFC07799.1| two-component system OmpR family sensor histidine kinase ResE
           [Staphylococcus aureus subsp. aureus H19]
          Length = 582

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 423

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 424 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 483

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 484 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 543

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 544 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580


>gi|282924740|ref|ZP_06332407.1| sensor protein srrB [Staphylococcus aureus A9765]
 gi|282592747|gb|EFB97753.1| sensor protein srrB [Staphylococcus aureus A9765]
          Length = 582

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 423

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 424 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 483

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 484 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 543

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 544 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580


>gi|322417759|ref|YP_004196982.1| histidine kinase [Geobacter sp. M18]
 gi|320124146|gb|ADW11706.1| histidine kinase [Geobacter sp. M18]
          Length = 584

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 19/222 (8%), Positives = 52/222 (23%), Gaps = 25/222 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H+I +P+  +    ELL    ++ +      +   S    L  +      + 
Sbjct: 198 SQFLANMSHEIRTPMNGVLGMAELLLHTELDGKQRSYAEMLHRSGESLLGIISDILNISK 257

Query: 76  SV-----------DSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119
                        D         ++  +         + ++        +       ++L
Sbjct: 258 IEAGKLEIERIGFDLHEATRSAVELYREVGRRKGVAIELQIAPDVPRHAVGDPNRLRQVL 317

Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIV-----DG 170
           +N+         +G             + +   F +K  G                  DG
Sbjct: 318 INIINNGLKFTEKGSVRIRVTLVEKSGNGHYVGFEIKDTGIGIPGEAIGAIFELFAQVDG 377

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +         +       L       +  E         + +
Sbjct: 378 STTRKYGGTGLGLAIAKQLVELMGGEIEVESEPGQGSTFTFI 419


>gi|253730990|ref|ZP_04865155.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253725273|gb|EES94002.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 549

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 331 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 390

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 391 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 450

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 451 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 510

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 511 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 547


>gi|161509720|ref|YP_001575379.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|160368529|gb|ABX29500.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|269940983|emb|CBI49367.1| sensor kinase SrrB [Staphylococcus aureus subsp. aureus TW20]
 gi|302751323|gb|ADL65500.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|323439507|gb|EGA97228.1| respiratory response protein B [Staphylococcus aureus O11]
 gi|323441525|gb|EGA99176.1| respiratory response protein B [Staphylococcus aureus O46]
          Length = 564

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 346 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 405

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 406 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 465

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 466 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 525

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 526 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562


>gi|37781575|gb|AAP35032.1| SrrB [Staphylococcus aureus]
          Length = 583

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|57650447|ref|YP_186376.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           COL]
 gi|88195296|ref|YP_500100.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151221611|ref|YP_001332433.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|221140088|ref|ZP_03564581.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|253733261|ref|ZP_04867426.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130]
 gi|258451149|ref|ZP_05699184.1| sensor protein srrB [Staphylococcus aureus A5948]
 gi|284024551|ref|ZP_06378949.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus 132]
 gi|294848521|ref|ZP_06789267.1| sensor protein srrB [Staphylococcus aureus A9754]
 gi|297207789|ref|ZP_06924224.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300911870|ref|ZP_07129313.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|76363425|sp|Q5HFT1|SRRB_STAAC RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363429|sp|Q6G973|SRRB_STAAS RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363430|sp|Q8NWF3|SRRB_STAAW RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|123003464|sp|Q2FY80|SRRB_STAA8 RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|57284633|gb|AAW36727.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           COL]
 gi|87202854|gb|ABD30664.1| staphylococcal respiratory response protein SrrB, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|150374411|dbj|BAF67671.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|253728801|gb|EES97530.1| histidine kinase [Staphylococcus aureus subsp. aureus TCH130]
 gi|257861204|gb|EEV84017.1| sensor protein srrB [Staphylococcus aureus A5948]
 gi|294824547|gb|EFG40970.1| sensor protein srrB [Staphylococcus aureus A9754]
 gi|296887806|gb|EFH26704.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300886116|gb|EFK81318.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|315198818|gb|EFU29146.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140625|gb|EFW32479.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144161|gb|EFW35930.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 583

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|75416541|sp|Q9L523|SRRB_STAAU RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|7839534|gb|AAF70313.1|AF260326_2 SrrB [Staphylococcus aureus]
          Length = 583

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|21283174|ref|NP_646262.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49486329|ref|YP_043550.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87162310|ref|YP_494137.1| staphylococcal respiratory response protein, SrrB [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|262049078|ref|ZP_06021955.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus D30]
 gi|21204614|dbj|BAB95310.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49244772|emb|CAG43208.1| sensor kinase protein [Staphylococcus aureus subsp. aureus MSSA476]
 gi|87128284|gb|ABD22798.1| staphylococcal respiratory response protein, SrrB [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|259162747|gb|EEW47312.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus D30]
          Length = 588

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 429

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 430 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 489

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 490 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 549

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 550 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586


>gi|118581010|ref|YP_902260.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503720|gb|ABL00203.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 661

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57
           + +     +  +D V  L   I HD  + + AI    E++D    +   ++         
Sbjct: 278 LLETQLHQMQKLDAVGQLAGGIAHDFNNILTAIIGFAEVMDMRMEQGAPLRHHVRQILAA 337

Query: 58  -MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109
              A    + +             + L +I   ++  +       + +           +
Sbjct: 338 AERAADLTQGLLAFSRKQVLHVRCLDLREIIDGLKKMLCRLIPEDIDFRVKTAATEMTVM 397

Query: 110 DLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKIN 154
               +  ++L+NL   A  ++P                    T       N  + S+  N
Sbjct: 398 ADRGQIEQVLMNLVTNARDAMPGGGVLTIKTGTGVIDEEFVRTNGFGVMGNYALISVTDN 457

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E   ++ +    +        +    +  +  ++   +  +            
Sbjct: 458 GCGMN-AETREKVFEPFFTTKRRGKGTGLGLSIIYGIVKQHDGFITVDSSPGQGATFRVY 516

Query: 213 LE 214
           L 
Sbjct: 517 LP 518


>gi|262382343|ref|ZP_06075480.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295221|gb|EEY83152.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 569

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 68/229 (29%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  L +   + + H+I +P+ AI    ++L +    +  ++   +   + 
Sbjct: 335 LERAKEKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEEDRETRLEFSNIIQSNN 394

Query: 61  IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--E 107
            +  +                      +D  + + +I  +I   +     ++++      
Sbjct: 395 ELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRMPSGIELRLNDCEALV 454

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +IL NL   +     + G +    + +     F ++ +G      +K   I
Sbjct: 455 MEADKNRLTQILTNLLTNSIKHTEK-GFIRFGYKRTAASVEFFVEDSGEGI-PRDKIDSI 512

Query: 168 VDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V+  S      +       L  +   ++          +    L 
Sbjct: 513 FSRFVQLDSWSKGVGLGLAICRGLVEQMGGKIWVTSELGKGSIFYVTLP 561


>gi|239908643|ref|YP_002955385.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798510|dbj|BAH77499.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 570

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 68/236 (28%), Gaps = 22/236 (9%)

Query: 2   AKNICFNL--SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------VGIED 47
           A+ +       S  L ++  L + + H+I +P+  I+    L+ +               
Sbjct: 329 ARELALRQVEHSQKLSSIGRLAAGVAHEINNPLAVINEKTGLMRDLIGLRDDFPDKERYL 388

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQV 102
            ++  +  + M      + M             I + D+       + ++ +     + +
Sbjct: 389 LLIDSVLKTVMRCRDITRRMLGFARRLDVTLEEININDVITETSGFLNQEALHRKIDLHL 448

Query: 103 SWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
               E   +  +R    ++ LN+   A A++P GG + I  +         ++ NG    
Sbjct: 449 DLDPEVTGIVSDRGQLQQVFLNILNNALAAVPDGGHIEIHTRGDAEGVSVIVRDNGCGMS 508

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                                +       +       +  E   D     +    K
Sbjct: 509 KDTMACIFEPFFTTKKTKGTGLGLSITYGIVKRLGGEIGVESELDKGTAFTLRFPK 564


>gi|218515205|ref|ZP_03512045.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli 8C-3]
          Length = 535

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 49/236 (20%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRL 55
            + +   L        L     S   H+  +P+  I  + + L   +     E +     
Sbjct: 286 TEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLAEKAD 345

Query: 56  SSMSAI--------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              S++                            S+  +I      Q             
Sbjct: 346 QIRSSVSRMLELMESILAAGRLDHGRITIVPKPCSIAEIIETCSARQESIRRSHRFLLKL 405

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++  NLF  A    P    V +S          +++  G      
Sbjct: 406 DELPETIYGDRPALDQVFSNLFSNAVKYAPDSPNVHVSGWREGERVCITVRDEGIGIDVD 465

Query: 162 EKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +        I    V  +   +   +       +    +  + 
Sbjct: 466 DLPKMFQRYFRARSSTGIAGTGIGLNLVKQIVELHGGTIDVASSRGNGTTFTLRIP 521


>gi|161528164|ref|YP_001581990.1| histidine kinase [Nitrosopumilus maritimus SCM1]
 gi|160339465|gb|ABX12552.1| histidine kinase [Nitrosopumilus maritimus SCM1]
          Length = 417

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 15/225 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + K          L ++  L SR+ HDI +P+  I   ++LL           + + ++L
Sbjct: 194 LRKQSEKERRLEKLASIGELASRVSHDIRNPLTTIKGVVDLLTSQKSTVTDEKDIQRLEL 253

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           I+ S      +++ +               L +I  +    +++   V+VS+  +   + 
Sbjct: 254 IKKSVTQINHQVEDVLDYVRTNKISLEKTSLLEIINLAAKRVSIPDSVEVSYPEKDYTIR 313

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            ++ K+ +        A  ++ R GK+ I ++   N     ++ +G           I +
Sbjct: 314 CDKLKMEIVFVNLLLNAVDAVRREGKIAIRMKSVDNFIEIQVEDSGPGIDSESISE-IFE 372

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +  +++  +            + ++ 
Sbjct: 373 PLFTLKQKGTGLGLASCKNIIEQHEGTINVSNNP---TTFTIMIP 414


>gi|161521754|ref|YP_001585181.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189352083|ref|YP_001947710.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345804|gb|ABX18889.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189336105|dbj|BAG45174.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 1029

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 63/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +   + + D       + L + + H+I +P+  I  +LELL+   ++      ++ 
Sbjct: 501 LVQKLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSTLDLPQRSRVQT 559

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              +A   L+ +     +T      + +  IE      IA +                  
Sbjct: 560 LRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLFCE 619

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155
           +  S +          A++  NL   A      G                    +++  G
Sbjct: 620 IAASASQRMRGDPTRLAQVFGNLLSNAIKFTAHGHVTARVRAVRGECGTAELAIAIEDTG 679

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +        +              +       L      R+            +
Sbjct: 680 IGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFT 739

Query: 211 ALLE 214
             L 
Sbjct: 740 VRLP 743


>gi|332535394|ref|ZP_08411185.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035187|gb|EGI71697.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 892

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 57/235 (24%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  +      +    +   + + H+I +P+  I  +L+LL E  + ++  + ++ S  S 
Sbjct: 517 LGHSKELAEQASQAKSEFLANMSHEIRTPMNGILGTLQLLQEQPLNEKSKEYLKKSLYST 576

Query: 61  IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                               + L        + +  L     V      +  +  +    
Sbjct: 577 RALTTIINDILDFSKIEAGKLSLEHKPFDFFELIHHLESDLGVQATDKNIYLKFVIDIEH 636

Query: 107 EKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +          ++ LNL   A     +GG         ++     +   G          
Sbjct: 637 KHWVGDPVRLRQVFLNLISNAIKFTSQGGVTVTFRLTDESRICCCISDTGIGISEQAI-D 695

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +       L       +               L 
Sbjct: 696 RLFERFEQAEQSTTREYGGTGLGLPITKSLIGLMNGEIKVTSQLGSGSQFYVYLP 750


>gi|197334116|ref|YP_002154884.1| osmolarity sensor protein EnvZ [Vibrio fischeri MJ11]
 gi|197315606|gb|ACH65053.1| osmolarity sensor protein EnvZ [Vibrio fischeri MJ11]
          Length = 434

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 70/213 (32%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           +  ++   ALL + + HDI +P+  I  + E++  ++  + + +++     +      + 
Sbjct: 220 IQKLEQDRALLMAGVSHDIRTPLTRIRLATEMMSPEDSYLAESMIKDTEECNEIIGQFMD 279

Query: 66  FMRLA-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD    + ++      +    +             +    +++ NL +
Sbjct: 280 YLKPVAKQDFTQVDVNTIVNEVILAEGGYEREIQTKLAMIPKAINGNAVAIKRVITNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDI 181
            A        +V+ SV          ++ NG      +    F     G+     +   +
Sbjct: 340 NAIRYGGDWIQVSTSVSADHKTVWIIIEDNGPGVDSAQLETVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  +++  +      +  + +     
Sbjct: 400 GLAIVKRIVTQHQGEVSLSNRSEGGLKVQVEFP 432


>gi|254226475|ref|ZP_04920060.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae V51]
 gi|125620981|gb|EAZ49330.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae V51]
          Length = 339

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 100 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 159

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 160 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 219

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 220 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 278

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 279 EALPHLFEPFHTTKKNGLGLGLSISQQILHSMQGALSVATSPLGGARFTITLPR 332


>gi|295094558|emb|CBK83649.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 526

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MA  +  +           S I HD  SP+ +I   +E + +        ++ + ++   
Sbjct: 254 MADELSRSNEYRKS---FISNISHDFRSPLTSIKGYIEAMLDGTIPLEKHEKYLGIVLNE 310

Query: 57  SMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSW 104
           +       + +               S   + DI     +      +        V ++ 
Sbjct: 311 AQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTINTFEKRCKDRGIFLDSVFLTD 370

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FP 161
                    +  +++ NL   A    P G ++ + V +  N+   S+K  G         
Sbjct: 371 NTVVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVTEKDNKIYTSVKDEGVGIPKDAQK 430

Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + F +    +     D     +       +   +  ++     +         L K
Sbjct: 431 KVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGEGSEFIFSLPK 486


>gi|293189575|ref|ZP_06608294.1| two-component sensor histidine kinase [Actinomyces odontolyticus
           F0309]
 gi|292821475|gb|EFF80415.1| two-component sensor histidine kinase [Actinomyces odontolyticus
           F0309]
          Length = 480

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 50/204 (24%), Gaps = 11/204 (5%)

Query: 22  ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRL-----AFGYT 74
           + H++ +PI  +   +ELLD  +     E   L+          +  +            
Sbjct: 266 VSHELRTPITVVRGHMELLDPDDHDDVVETRALVIDEIDRMGTLVGDLLELARASDTVNP 325

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
            S D       +             +  +             +  L L   A      G 
Sbjct: 326 ASTDLAALTEAVLDKARALGDRQWTLGEAAQVTCCLDPTRITQAWLQLAQNAVQYSADGT 385

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDG-NVESTIDSHDIQFYYVILLA 190
            + I            ++  G      +      + V G     ++    +    V  +A
Sbjct: 386 LIAIGSGTDSQWARLWVRDRGVGIAPDDIECVRQRFVRGTAGTESVAGSGLGLNIVESIA 445

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   L  E         + ++ 
Sbjct: 446 RAHGGHLDIESTPGVGSTFTLVIP 469


>gi|317154216|ref|YP_004122264.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944467|gb|ADU63518.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 479

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-------SSMSAII 62
               + A   + + H+I +P+ +I  +++L+    + +   +  R        S   + +
Sbjct: 242 REERMRADFVAMLSHEIRTPLTSIREAVDLVGSGALGEVNERQERFLAIAGQESIRLSDL 301

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------SWTGEKIDL 111
             + M ++   + ++D      D   ++   +                         +  
Sbjct: 302 LARLMTVSRMESQALDLSPEPTDCAGLVTSALERLAPTAQARRVALSARLPDAPVSCVCD 361

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-- 169
                ++LLNL        P G  VTI +   ++   F +   G      E+        
Sbjct: 362 PAHVQQVLLNLIGNGIKFSPEGSTVTIELLADESAATFRVSDTGPGIAQQEQELVFHKYY 421

Query: 170 --GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  ++D   +       +   +  R+  +         S  L 
Sbjct: 422 REPGMRHSVDGAGLGLAIARRIVEAHGGRMALDSEPGLGSTFSFTLP 468


>gi|229090971|ref|ZP_04222195.1| hypothetical protein bcere0021_17890 [Bacillus cereus Rock3-42]
 gi|228692372|gb|EEL46107.1| hypothetical protein bcere0021_17890 [Bacillus cereus Rock3-42]
          Length = 293

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 72/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 59  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKREHYLTIIETE 115

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++ +G      +    
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 235

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 236 FERFYKADSSRTRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 288


>gi|254975375|ref|ZP_05271847.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255092765|ref|ZP_05322243.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255314504|ref|ZP_05356087.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255517181|ref|ZP_05384857.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255650285|ref|ZP_05397187.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260683401|ref|YP_003214686.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260686997|ref|YP_003218130.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|306520259|ref|ZP_07406606.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
 gi|260209564|emb|CBA63181.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260213013|emb|CBE04341.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 664

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
               L    ++++  L S + H+I +P+G I N+  LL +       ++ ++ I  +   
Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLS 112
           A   +  +      +      I + +  + I               ++            
Sbjct: 495 ASNIITNLLNFARISDDNLEHINIRNFIENIVKLQYKMLQLKNVEIKIDCEHNLVCYING 554

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                + +NL   +  ++ + GK+ I   +  +      K NG   +       I +   
Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNHCLFIDFKDNGEGIKEDALKD-IFNPFY 613

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +  Y       +N   +  E            + 
Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657


>gi|213857465|ref|ZP_03384436.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 513

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 17  MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 76

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 77  NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 136

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 137 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 195

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 196 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 254


>gi|298246254|ref|ZP_06970060.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553735|gb|EFH87600.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 495

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 62/238 (26%), Gaps = 31/238 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRL 55
           + +              L + I HD+ +P+ AI    E     ++ +     E  Q I  
Sbjct: 254 LRRQEQARRE-------LLANIAHDLATPLTAIQGFSEALADDMIQDPAARQETAQRIGR 306

Query: 56  SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----S 103
                   +  ++                +     + +   VIE        V       
Sbjct: 307 EVQRLRRMVADLQQMTSLESGRTRLDLAPLSLHELIAETLAVIEPECEHAGIVVHNETRD 366

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARF- 160
                   S    ++LLNL   A    P GG +T+     +S       ++  G      
Sbjct: 367 DVPLVQADSDRVTQVLLNLLDNARRHTPVGGTITVGAHPGESGQSVEVWIEDTGVGIDSA 426

Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P  F +    +           +    V  +   +  ++           +S  L 
Sbjct: 427 DLPHIFERFYRADRSRTGATGGSGLGLSIVRAIITAHGGKVWARSTPGKGTRISFSLP 484


>gi|289578187|ref|YP_003476814.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
 gi|289527900|gb|ADD02252.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter italicus Ab9]
          Length = 451

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 67/219 (30%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64
           L   + S I H++ +P+  + + +E + +   +    +L  L+     +           
Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGVWQPTYERLKSLNEEVLRLINIVKDLETLN 291

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 ++L        + +  +    +        +    +      +      A++ +
Sbjct: 292 KFESDMLKLKKIKFNVSELVKNILTNFEASFVEKEQEVVKNIEDNIMLLGDKDRIAQVFV 351

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKEGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRK 411

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I    V  +   +  ++  E   +     +  + 
Sbjct: 412 TGGSGIGLSIVKAIVLAHGGKINVESEINKGSKFTVRIP 450


>gi|256783166|ref|ZP_05521597.1| two component system histidine kinase [Streptomyces lividans TK24]
          Length = 508

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----------V 43
           MA+ +     + +L  L        + + H++ +P+ A+    E+LDE            
Sbjct: 265 MAETLER--DAAELRRLEAGARRFAADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTE 322

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                + + +R  +      ++  R        +   VD    +    Q+         R
Sbjct: 323 DAVRLISEEVRTLTRMVEDLMEVSRFDAKAAPVHPEDVDLRTLVTKTLQLRGWAHDERVR 382

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +          R    +L NL   A         VT++V+ S +    ++   G    
Sbjct: 383 ADLPEPAPVRVDPRRIDVVLGNLVANALHHGG--PPVTVAVRVSDDRVRVTVTDRGPGIP 440

Query: 160 F---PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               P  F +    +          +        A  +   L          V +  L +
Sbjct: 441 DDALPYVFDRFYKADAARPRSGGSGLGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 500


>gi|297544468|ref|YP_003676770.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296842243|gb|ADH60759.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 461

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 67/219 (30%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64
           L   + S I H++ +P+  + + +E + +   +    +L  L+     +           
Sbjct: 242 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGVWQPTYERLKSLNEEVLRLINIVKDLETLN 301

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 ++L        + +  +    +        +    +      +      A++ +
Sbjct: 302 KFESDMLKLKKIKFNVSELVKNILTNFEASFVEKEQEVVKNIEDNIMLLGDKDRIAQVFV 361

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 362 NLISNSNKYTPVGGKIKIDFYKEGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRK 421

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I    V  +   +  ++  E   +     +  + 
Sbjct: 422 TGGSGIGLSIVKAIVLAHGGKINVESEINKGSKFTVRIP 460


>gi|241666814|ref|YP_002984898.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240862271|gb|ACS59936.1| histidine kinase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 631

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 63/231 (27%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIED--------EVMQL 52
              +L+       L S I H++  P+ AI N+ E    LL     +         ++ + 
Sbjct: 393 EAVHLNQSATAGALSSSIAHELNQPLSAIRNNAEAASVLLRSANPDHGLIQQILLDIQED 452

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGE 107
            + +          ++           L  +      I    A  + + ++         
Sbjct: 453 DQRAGDIISRMRGLLKKRSEIDWQEFDLNDVTSSAIHIIHGEAERRGITLTSTQPPGELP 512

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEK 163
                    +++LNL   A  ++        ++  +      +    +   G+     E+
Sbjct: 513 VRADKVHVQQVILNLATNAMDAMLDAVPAGRTLTFATGLANEKAELRVSDTGDGI-PEER 571

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +       +       +  +   +   V    L 
Sbjct: 572 LIRIFEPFYTTKQAGTGLGLSIARAILETYGGTIRADNRPEGGAVFRVALP 622


>gi|158339446|ref|YP_001520623.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309687|gb|ABW31304.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 496

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 73/202 (36%), Gaps = 12/202 (5%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75
           H++ +PI  +   LEL+ D+   ++E ++L+          +  M       R  F    
Sbjct: 287 HELRTPITIVRGHLELMGDDPKEQEETIELVLDELDRMGRLVNDMIALTKSERPDFLQYE 346

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            +D    + ++    +     D ++Q++ +   +   +     LLNL   A    P  G 
Sbjct: 347 MIDLNQFMDELFTKAQALADRDWQLQLNCSSSMMGDRQRLTGALLNLLRNATQHTPASGT 406

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHDIQFYYVILLAHE 192
           + +  + + ++ IF +K NG      E+  +I D          D   +    V      
Sbjct: 407 IELGCKQTFSQVIFWVKDNGEGMTLEEQL-RIFDRFARLGKRQSDGSGLGLAIVKAFTKA 465

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           ++ ++  E         +  L 
Sbjct: 466 HRGKIDVESQPGRGSTFTITLP 487


>gi|78356740|ref|YP_388189.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219145|gb|ABB38494.1| periplasmic sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 907

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 57/239 (23%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +        + I H+  +P+ AI    E++ +  +       + + + +A
Sbjct: 366 LREAKELAEEADKAKGEFLANISHEFRTPMNAIIGMSEVILKTELSAPQRNHLTVLNKAA 425

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SW 104
              L  +     ++        L     ++         + +                  
Sbjct: 426 HSLLDLLNTILDFSRYESGKATLALSPFMLHAPFTQVHEMFLSAAAAKGLPLQLELAPDM 485

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                    +  +IL+NL   A      G                +  FS+   G     
Sbjct: 486 PRAVEGDEGKIRQILVNLVSNALKFTDTGNITITCKAFPAPSGRADICFSVSDTGIGIEK 545

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           DG+   T     +      LLA      +            +  L 
Sbjct: 546 EKHSAIFDSFTQADGSYTRTYGGTGLGLSICKLLADMMGGSITVRSAPRQGSTFTVCLP 604


>gi|332304524|ref|YP_004432375.1| integral membrane sensor signal transduction histidine kinase
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332171853|gb|AEE21107.1| integral membrane sensor signal transduction histidine kinase
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 432

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 9/220 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           MAK I       D  ALL + I HD+ +P+  I  + E+L    +   E  V  +  ++ 
Sbjct: 212 MAKGIKQL---EDDRALLTAGISHDLRTPLTRIRLATEMLPEAQDWLKEGIVNDIEDMNE 268

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +         +       SVD    + D  QV       +  + +              +
Sbjct: 269 IIDQFINYVRQDQQESMVSVDVNELIRDAVQVRNIEEHHNIHLHLKPIPTACMRRVALKR 328

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES 174
           +L NL   A        ++      ++N   FS++  G      +    F     G+   
Sbjct: 329 VLDNLIENAFRYGSEDIEIHSGYDKARNLLFFSIRDFGPGIPDTQIEGLFKPFTQGDKAR 388

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +  +   +   +  +   +  ++ S  + 
Sbjct: 389 GSLGSGLGLAIIKRIVDMHSGEVTLKNHPEGGLIASIFIP 428


>gi|325111013|ref|YP_004272081.1| histidine kinase [Planctomyces brasiliensis DSM 5305]
 gi|324971281|gb|ADY62059.1| histidine kinase [Planctomyces brasiliensis DSM 5305]
          Length = 242

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 19/227 (8%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSM 58
                    +   L   + H++ +P+  +  +LE+L E         E  V Q +     
Sbjct: 16  ESLRREYEQMA-QLAGGLAHELRNPLSTVCLNLEILKEDLKEAETARERRVRQRVDSIRE 74

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKID 110
                 + +     +T  ++      D+ Q+             A    +      +   
Sbjct: 75  ECRRLEELLNEFLQFTRGLELTSEPTDLSQLVEKFIAFEKPQAAAAHVDISQHLASDLPP 134

Query: 111 LSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +  +   +L NL   A  ++P GG +              +  +G          +I
Sbjct: 135 VLLDTRQFKSVLENLTRNAIQAMPHGGVLEFQTYAKDGSVFLDIIDSGEGIPEK-NRGKI 193

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      +    V  +   +  ++  E            L 
Sbjct: 194 FSLFFSTKSAGSGLGLPTVRKIVEAHGGQITCESELGRGTRFQIELP 240


>gi|291279768|ref|YP_003496603.1| two-component sensor histidine kinase [Deferribacter desulfuricans
           SSM1]
 gi|290754470|dbj|BAI80847.1| two-component sensor histidine kinase [Deferribacter desulfuricans
           SSM1]
          Length = 457

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 17/226 (7%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           KN+     +  L +L  L   I H+I +P+     +LEL+ +   +D  +        + 
Sbjct: 233 KNVAL---NEKLTSLGRLAMGIAHEINTPLTNASLTLELIRKRIPQDSKLLDKLSMLEAN 289

Query: 61  II---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           I           L        +       I    +  +          V +    +   +
Sbjct: 290 IDRASLIAKELLLFSKDDNLDFQDIKIENIINNSLMFIGNHKRYRQIVVFIKENCDIECI 349

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++++NL + A  ++   G + I     K    F +  NG      E   ++ D  
Sbjct: 350 PHKIEELIINLLLNAFDAIDDNGLIKIISNCDKEYIYFEIADNGTGI-SQEILDKVFDPF 408

Query: 172 VESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +        +  Y    +   +K  +  +       ++   L +
Sbjct: 409 FTTKGPNFGTGMGLYICYNIVKLHKGEINIDSEVGKGTIVRIKLPR 454


>gi|229150218|ref|ZP_04278440.1| hypothetical protein bcere0011_17730 [Bacillus cereus m1550]
 gi|228633337|gb|EEK89944.1| hypothetical protein bcere0011_17730 [Bacillus cereus m1550]
          Length = 351

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      +  +G      +    
Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIHDSGIGILEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 346


>gi|153838733|ref|ZP_01991400.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810]
 gi|149747858|gb|EDM58738.1| tmao reductase sytem sensor tors [Vibrio parahaemolyticus AQ3810]
          Length = 723

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N     S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARNEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLMDSGLNPIQKRYAEIINRSGK 516

Query: 62  IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+               L  + +     +              ++   +
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRRLGFDLHQMVEDTFQLMNSRAQEKQLLFSYHIESDVS 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A      G          + +++ +F +   G      ++
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTEDGEIDIYVSLNPEDESQVLFEVSDTGIGISKKDQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T              I    +       +       L  +  +         + 
Sbjct: 637 KTLFDAFTQAEGGLNQIGGTGLGLAISKRIVEAMGGVLEVDSEEGEGSRFWFSIP 691


>gi|297568257|ref|YP_003689601.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924172|gb|ADH84982.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 619

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------- 50
           + + +   +     +VA+  L + + H+I +P+G I   ++L+                 
Sbjct: 372 LQQELEKKIQQTEKMVAMGQLVAGLAHEINNPLGIIICYVDLVKRQPNLSPRALQDLEVI 431

Query: 51  -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-KRVQVSWTGEK 108
            +  R         L F R         D    + ++  ++          + +      
Sbjct: 432 GKQARGCKRIVGDLLDFARSGESRKQPADLNRIIEEVAGIVAPQFGKQGVAINLELAPGL 491

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPE 162
             L  +     ++ LNL + A  ++   G                   ++ NG      +
Sbjct: 492 PWLELDENKIKQVFLNLLLNARQAMQDEGGEIEIKSLLLAPSGPVRIEVRDNGPGIESED 551

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D    +    +   +       +  E+   +            +  L 
Sbjct: 552 LS-KIFDPFFSTKRTGEGTGLGLSVSYGIVKEHGGEIRVASRIGQWTCFTIDLP 604


>gi|292491506|ref|YP_003526945.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
 gi|291580101|gb|ADE14558.1| diguanylate cyclase [Nitrosococcus halophilus Nc4]
          Length = 1499

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L S  +     + + H++ +P+  +   LELL  +G+  +  + ++++  S 
Sbjct: 259 LKRARDAALESARIKGEFAANVSHELRTPLNGVLGMLELLRNMGLTPKQREYVQVACNSG 318

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
              L+ +     ++        L   +  +++ +                     V  + 
Sbjct: 319 ETLLELIGNILDFSRIESGRFKLDPADFYLQEILDDAIGLLAGQAQRKDLDLGYVVAKNV 378

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
                  +    +IL+NL   A     +G              K   +F +K  G     
Sbjct: 379 PPSLRGDATRIRQILINLMGNAVKFTEQGEVSVEVQLLEKTAKKLVLLFEVKDTGIGIPI 438

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +              +       L       +  E            + 
Sbjct: 439 EFQKHIFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESKFGGGSRFWFTVP 497


>gi|322417612|ref|YP_004196835.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320123999|gb|ADW11559.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 486

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 12/225 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           +A+        + ++  L   + H++ +P+G + N++  L     D      E + +I  
Sbjct: 244 LAQEDLVRQEKLSILGQLSGSLSHELRNPLGVMSNAVYFLKAVHADADETTKEYLGIIGS 303

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKID 110
              ++   +  M           + +  G++ +      ++ + V V             
Sbjct: 304 EIANSQRIITDMLDFARTKPPKRTPVSPGELVRQSLKGCSIPENVTVAVAVQEEPPILNV 363

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++L N  + A  ++  GG + ++ +    +E   S+   G     PE   ++  
Sbjct: 364 DPLQMGQVLTNFIINAVQAMSNGGSLQLAARLIPGDEMEISVTDTGEGI-SPENRVKLFQ 422

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       L   N  R+  E         +  L 
Sbjct: 423 PLFTTKPKGIGLGLVVCKNLVEANGGRIEVESEPGKGTTFTVKLP 467


>gi|205372509|ref|ZP_03225322.1| sporulation kinase B [Bacillus coahuilensis m4-4]
          Length = 298

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 68/221 (30%), Gaps = 10/221 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLI 53
           K        M+ +  L S I H++ +P+  +   ++LL++   + +          +   
Sbjct: 76  KEEMLRAEKMNTMGELASSIAHEVRNPLTVVKGFVQLLEKNNSQKDHDYYSLIFSEIGKA 135

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  +   K          + D +  +  +   +     V+  ++            
Sbjct: 136 EGIISDYLNFAKPQFDKIERLHAGDIIEEVVSLMTPMAIAEGVEVYIETCEETYVYTDKD 195

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  ++ +NL   +  +   G KV I  Q + NE   ++K  G      E+  +I      
Sbjct: 196 KLKQVCVNLIKNSIEASSVGEKVLIGCQPTLNEVEITIKDEGKGM-TQEQLERIGTLFYT 254

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I     + +      ++           ++  + 
Sbjct: 255 TKDKGTGIGTMVTLRIVQSMNGKVSYTSEPGKGTTVTVRIP 295


>gi|332706881|ref|ZP_08426942.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354765|gb|EGJ34244.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 436

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +       DL + + S + H+  +P+  I +S ELL+    +    +  R      
Sbjct: 180 LRQALNKEKELNDLKSRIVSVVSHEYRTPLATILSSTELLEHYSHKWSSEKKRRHFQRIQ 239

Query: 61  II------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                       +   +     E V E  +  +  + +++    
Sbjct: 240 TTVQHLTKLVSDVLLFSKAEAGKLEFKPLPIDVVAFCKEIVEEFKLTANTGLTINFNCTN 299

Query: 109 IDLSRERA-----------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
                                    +IL NL        P GG +   +  S +  +F +
Sbjct: 300 NSKETSCCINQGWFEKADLDEKLLRQILSNLLSNGIKYSPDGGDIQFDLIMSDHSTMFRI 359

Query: 152 KINGNLARFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           + +G     PE   ++ +    S+    I    +    V    + +   +  +       
Sbjct: 360 QDSGIGI-PPEDQERLFEAFQRSSNVGTISGTGLGLAIVKKCVNLHGGEICVDSEVGVGT 418

Query: 208 VLSALLE 214
             +  L 
Sbjct: 419 AFTVTLP 425


>gi|327189034|gb|EGE56220.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CNPAF512]
          Length = 802

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 49/236 (20%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRL 55
            + +   L        L     S   H+  +P+  I  + + L   +     E +     
Sbjct: 553 TEELERMLEQEKQINELQRQFVSMASHEFRTPLAVIDGAAQRLIRRKEAATPEFLAEKAD 612

Query: 56  SSMSAI--------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              S++                            S+  +I      Q             
Sbjct: 613 QIRSSVSRMLELMESILAAGRLDHGRITIVPKPCSIAEIIETCSARQESIRRSHRFLLKL 672

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++  NLF  A    P    V +S          +++  G      
Sbjct: 673 DELPETIYGDRPALDQVFSNLFSNAVKYAPDSPNVHVSGWQEGERVCITVRDEGIGIDAD 732

Query: 162 EKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +        I    V  +   +   +       +    +  + 
Sbjct: 733 DLPKMFQRYFRARSSTGIAGTGIGLNLVKQIVELHGGTIDVASSRGNGTTFTLRIP 788


>gi|315180645|gb|ADT87559.1| C4-dicarboxylate transport sensor protein [Vibrio furnissii NCTC
           11218]
          Length = 602

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              DE +  
Sbjct: 358 LRQTQNELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLASGKSERTDENLAR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEK 108
           I   +       + ++     + S D+         V              + ++    +
Sbjct: 418 ISGLTERMAKISEQLKSFARKSSSDDTADVQLYPIVVYAKELMQPQFKSHYIDLNIQTPQ 477

Query: 109 IDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFP 161
             +       +  ++L+NL   A  +L       +++     ++  +  +  NG      
Sbjct: 478 APVWASVNPIQLEQVLINLLTNAMQALDGQESRCVAITLLSEEDGTLIHVDDNGPGL-GQ 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +K   + +    +  +   +       +       L            +  L 
Sbjct: 537 DKIEHLFEPFFTTKQNGLGLGLSISQQIMQSMNGNLTASTSPLGGARFTIHLP 589


>gi|260768949|ref|ZP_05877883.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio furnissii CIP 102972]
 gi|260616979|gb|EEX42164.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio furnissii CIP 102972]
          Length = 602

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              DE +  
Sbjct: 358 LRQTQNELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLASGKSERTDENLAR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEK 108
           I   +       + ++     + S D+         V              + ++    +
Sbjct: 418 ISGLTERMAKISEQLKSFARKSSSDDTADVQLYPIVVYAKELMQPQFKSHYIDLNIQTPQ 477

Query: 109 IDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFP 161
             +       +  ++L+NL   A  +L       +++     ++  +  +  NG      
Sbjct: 478 APVWASVNPIQLEQVLINLLTNAMQALDGQESRCVAITLLSEEDGTLIHVDDNGPGL-GQ 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +K   + +    +  +   +       +       L            +  L 
Sbjct: 537 DKIEHLFEPFFTTKQNGLGLGLSISQQIMQSMNGNLTASTSPLGGARFTIHLP 589


>gi|228985749|ref|ZP_04145899.1| hypothetical protein bthur0001_24390 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773921|gb|EEM22337.1| hypothetical protein bthur0001_24390 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 413

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++    +  M++V+ L + I H++ +P+  +    +LL                +++ + 
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112
            +       L F + A      +     L  +  +I     ++         T   +   
Sbjct: 243 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTTLTITFPK 404


>gi|229156238|ref|ZP_04284334.1| hypothetical protein bcere0010_24270 [Bacillus cereus ATCC 4342]
 gi|228627113|gb|EEK83844.1| hypothetical protein bcere0010_24270 [Bacillus cereus ATCC 4342]
          Length = 413

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++    +  M++V+ L + I H++ +P+  +    +LL                +++ + 
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112
            +       L F + A      +     L  +  +I     ++         T   +   
Sbjct: 243 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTTLTITFPK 404


>gi|168700932|ref|ZP_02733209.1| integral membrane sensor signal transduction histidine kinase
           [Gemmata obscuriglobus UQM 2246]
          Length = 509

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 58/235 (24%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + K     L +  L     + + I H++ +P+  I   ++   +     G   + ++++ 
Sbjct: 258 LKKTERDALRAEQLAWVGQMAAGIAHEVRNPLTVIKLLVQAATDPRRANGFRPQDLRVLE 317

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV-----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +     ++                  + +    +E V          V+   + +  
Sbjct: 318 GEILRLEQIIRTFLDFARPPRPEKKSVAPAELIRDCVEGVTARAELQGVTVRAVVSSDLP 377

Query: 110 DLSRERAKILLNLFMVAHASLPRGG----------KVTISVQDSKNENIFSLKINGNLAR 159
            L  +  ++   L+ +   +L                              +   G    
Sbjct: 378 PLDADPGQLGQVLYNLLFNALDVLPSGGTVRVTAAVTPDGTDTPGGTLTVLVSDTGPGLP 437

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 QI D  + +      +       +   +   +          V    L 
Sbjct: 438 VG-LEEQIFDPFISTKETGLGLGLSICRRIVEAHGGSIGATNGPAGGAVFVIRLP 491


>gi|220916056|ref|YP_002491360.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953910|gb|ACL64294.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 530

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 57/221 (25%), Gaps = 19/221 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKF 66
            +L + L S + HD+ +P+ AI  +  LL + G+ D  ++          +      +  
Sbjct: 288 EELRSGLLSSVSHDLRTPLAAITGAGTLLLDDGVNDPAIRRDLAATVVDEAERLERLVSN 347

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SWTGEKIDLSRERA 116
           +       G              +           +                        
Sbjct: 348 LLDMTRLEGGAVEPKREWVPLTEVVGAAMNRLERPLAARPVAVAIPDELPLLSVDPILVQ 407

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-- 174
           ++ +NL   A    P G ++ +            +   G      E+  +I D    +  
Sbjct: 408 QLFVNLLENATKHTPPGSEIAVRAAREGGMVAIEVADRGPGLPEGEE-ERIFDRFQRAAR 466

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +       +A  +  RL          V    L 
Sbjct: 467 PGVRGVGLGLPIARAIAQAHGGRLTAANRAGGGAVFRLTLP 507


>gi|47569601|ref|ZP_00240278.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47553716|gb|EAL12090.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 422

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++    +  M++V+ L + I H++ +P+  +    +LL                +++ + 
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112
            +       L F + A      +     L  +  +I     ++         T   +   
Sbjct: 252 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGSLKIRSVINKGTTLTITFPK 413


>gi|325289318|ref|YP_004265499.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964719|gb|ADY55498.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 675

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K+     S+  + +   + + H+I +P+  +   ++LL     ++E  + IR++  SA
Sbjct: 279 LQKSRDEAESANRVKSEFLANMSHEIRTPLNGLVGMMDLLSRTDPDEEQQECIRMAKFSA 338

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
               K +     ++            S D    L ++ ++            +  +    
Sbjct: 339 NTLFKVIDGILDFSRIEAGKIAIAKISFDLKALLEEVIKIHTVLAEQKGLALEHDIPPDL 398

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160
                       +IL NL   A     RG        I  Q  + E  F +  +G     
Sbjct: 399 PPYLTGDPDHLRQILNNLIGNALKFTDRGQIKVSVREIRHQGQQVELEFCVADSGVGISP 458

Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    F +    +  V        +       LA      +  E       V    L
Sbjct: 459 GKMDLLFKRFSQVDSSVTRRYSGTGLGLAICKQLAELMGGAIRAESEMGKGSVFRFTL 516


>gi|313606642|gb|EFR83405.1| heme sensor protein HssS [Listeria monocytogenes FSL F2-208]
          Length = 459

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 63/232 (27%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    +  +              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTGKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINLDLAEVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P GG + I + +        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPPGGNIQIHLYEEGTNVFVEVRDSGVGISKSDMAKIFE 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458


>gi|229178390|ref|ZP_04305759.1| hypothetical protein bcere0005_17520 [Bacillus cereus 172560W]
 gi|229190088|ref|ZP_04317094.1| hypothetical protein bcere0002_17600 [Bacillus cereus ATCC 10876]
 gi|228593417|gb|EEK51230.1| hypothetical protein bcere0002_17600 [Bacillus cereus ATCC 10876]
 gi|228605120|gb|EEK62572.1| hypothetical protein bcere0005_17520 [Bacillus cereus 172560W]
          Length = 351

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +               +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   +   +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346


>gi|255655755|ref|ZP_05401164.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
 gi|296451013|ref|ZP_06892758.1| two component sensor histidine kinase [Clostridium difficile NAP08]
 gi|296879022|ref|ZP_06903019.1| two component sensor histidine kinase [Clostridium difficile NAP07]
 gi|296260144|gb|EFH06994.1| two component sensor histidine kinase [Clostridium difficile NAP08]
 gi|296429975|gb|EFH15825.1| two component sensor histidine kinase [Clostridium difficile NAP07]
          Length = 664

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
               L    ++++  L S + H+I +P+G I N+  LL +       ++ ++ I  +   
Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWTGEKIDLS 112
           A   +  +      +      I + +  + I             + ++            
Sbjct: 495 ASNIITNLLNFARISDDNLEHINIRNFIENIVKLQYKILQLKNVEIKIDCEHNLVCYING 554

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                + +NL   +  ++ + GK+ I   +  +      K NG   +       I +   
Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNHCLFIDFKDNGEGIKEDALRD-IFNPFY 613

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +  Y       +N   +  E            + 
Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657


>gi|332709210|ref|ZP_08429176.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332352019|gb|EGJ31593.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 431

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 72/239 (30%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRI----CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +   +  +L     V+ L SRI     H+  +P+  I +S+ELL++   +    Q ++  
Sbjct: 186 LESQLRQSLEREKEVSDLKSRIIFTISHEYRTPLMTILSSVELLEQYRHKLTDSQQVKHF 245

Query: 57  SMSAIIRLKF------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                           V   +     E       ++  + ++ +
Sbjct: 246 WRIQGAVKHMTTLVNDLLFINQAEFDKLEFQPVALNLVTFFQELFCPIQSSLGAKHRLLF 305

Query: 105 TGEKID-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           + ++         +   +IL N+   A    P GG + + +   + + I  +   G    
Sbjct: 306 SSKRDWEPILGDPKIIRQILNNIISNAIKYSPDGGTILVQLNGDEEKVILQIIDQGIGIP 365

Query: 160 FPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++       +  S +       +    V      +  ++  E         +  L K
Sbjct: 366 KEDQPKLFESFSRASNVGIIPGTGLGLSIVKSCVDSHGGKIHVESEVGVGTTFTITLPK 424


>gi|332524691|ref|ZP_08400890.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332107999|gb|EGJ09223.1| multi-sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 811

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RLS 56
           M +       +    +   + I H++ +P+ AI    EL    G   E +  +      +
Sbjct: 568 MREARDIAEEASRAKSEFIANISHELRTPLQAIIGFSELGMVRGRAHERLASMFGDIHAA 627

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104
               +  +  +             +    D    + ++ + I+  +A  +          
Sbjct: 628 GQRMLALVNDLLDVSKIESTVGTFHLERTDLRPLVREVAREIDPLLARRRLHLDLALSEG 687

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEK 163
                       +++ N+   A    P G  +T+       N+ + +++ +G      E 
Sbjct: 688 PLVAKVDPMRFQQVVRNVLANAVRFSPDGETITVRGDVDARNQIVVAVRDHGPGIPPGEL 747

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S          +       +   +   +  E  D      +  + 
Sbjct: 748 EKIFEAFVQSSKTKDGSGGTGLGLAICRKIVEAHGGSIQAENADGGGSRFTIAVP 802


>gi|288871250|ref|ZP_06410080.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479]
 gi|288864174|gb|EFC96472.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479]
          Length = 720

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +  +L        +++  QL      
Sbjct: 479 KEQAAVLAKNEQLRANLLRAISHDLRTPLTSISGNAGVLLANDTVIPQEKRRQLYGDIYD 538

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
            ++  +  +      T   D  + L    ++++D +A         + E      +    
Sbjct: 539 DSLWLINLVENLLAVTRIEDGSMNLRLKPELMDDVVAEALHHINRKSVEHHITVAQSNEL 598

Query: 117 -----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++++N+   A    P+G  +T+    S +  +  +  NG      E   
Sbjct: 599 ALARMDGRLIVQVVINIVDNAIKYTPQGSTITVRTFTSGDWVVTEISDNGPGI-SDEVKL 657

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    S+        S  +       +   +   +     +    V    L 
Sbjct: 658 RIFDMFYTSSTKIADSRRSLGLGLALCKSIITAHGGTIEVRDNEPEGTVFCFTLP 712


>gi|209523453|ref|ZP_03272008.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209496195|gb|EDZ96495.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 655

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
           K+I    +   +     S + H++ +P+ +I  SL LL              ++ +   +
Sbjct: 420 KDITERQAMEKMKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPEKSQRMLDIAMFN 479

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTG 106
               +      + L   ++G +       ++  ++                    +    
Sbjct: 480 CDRLMRLVNDILDLERMHSGQLPMHKDWVNLADLMIQAADEMLPVAEKAGVDLCVIPLEF 539

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           + +       ++L NL   +        ++  + +  +N+ + S++  G      +  T 
Sbjct: 540 KVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENDVLISVRDRGRGIPPDKIETI 599

Query: 167 IVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +         +       +  ++  ++  E I          L 
Sbjct: 600 FGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGAGSTFFVSLP 652


>gi|15602296|ref|NP_245368.1| PhoR [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12720684|gb|AAK02515.1| PhoR [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 431

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 18/232 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+++   +  +       S I H++ +P+  +   LELL+       + Q    +  +  
Sbjct: 191 ARDVTQMIRLLHSRQTFLSNINHELRTPLTVLQGYLELLEAEKDHSALAQKAIHAMQAQS 250

Query: 62  IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEK 108
            R+  +                    VD    + ++++          ++          
Sbjct: 251 QRMANLLQQLNVLAKIESSSNQEHEPVDMSRLILNLKENAHFLNHYHHQIHFDIAPDIYV 310

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---T 165
                +    + NL   A        ++ +S Q       FS+  NG        +    
Sbjct: 311 FGDESQLQSAVSNLIYNAIKHSGENCQINVSWQLCAEGAKFSVTDNGIGIATHHLYHLTE 370

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +   +     H +    V     ++  +L  E  +      S ++ K
Sbjct: 371 RFYRVDESRSNQTGGHGLGLAIVKHALEQHHAQLEIESKEGEGSCFSFIIPK 422


>gi|115359898|ref|YP_777036.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285186|gb|ABI90702.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 1002

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 55/239 (23%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    +   + + H+I +P+ AI  +LEL++   +  E  + ++    S+
Sbjct: 507 LREAREAADDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAPLPAEERRRLQTVMSSS 566

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
                                       D    + D+  +     A        R+    
Sbjct: 567 DALLRVINDVLDLSKVESNQMVLEAVPFDLRAVVRDVAAIFHPLAAARHLALECRIDPQL 626

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160
               +       +I+ NL   A     RG     +               ++  G     
Sbjct: 627 ADGYVGDPTRLRQIVSNLVSNAIKFTERGSVTIEARPTGTVGQARGVEVVVRDTGIGIAP 686

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               T                    +       LA      L  E            L 
Sbjct: 687 ESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHGDLAVESRPGQGATFIVSLP 745


>gi|301059368|ref|ZP_07200295.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300446597|gb|EFK10435.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 571

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 26/234 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +N+   L          S + H++ +P+ +I    ELL      +   +   +Q+I   S
Sbjct: 340 RNMKDALQKTS----FVSNVSHELKTPLTSIRMYAELLFEGRIKDPDKKKTYLQVIVSES 395

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEK 108
                 +  +             +   +D    L ++              +   + GEK
Sbjct: 396 QRLTRLVNNVLDFSRLEQGRKTYHPQKIDLNEFLMEVVDSHRLRIKEAGMTIDTHFLGEK 455

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I ++ +R    ++ +NL   +      G +V +SV  +  +    ++  G      ++  
Sbjct: 456 IFVNADRDAIEQVFINLIDNSIKYAGPGIEVVVSVNKNGKDCEIRIEDRGPGVPEADRHK 515

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       S      +       ++ +    L+ E  D         L 
Sbjct: 516 IFEKFHRVDDTLTSKQQGSGLGLSIARKISRDLGGNLVYESRDGGGSCFIVRLP 569


>gi|322419614|ref|YP_004198837.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126001|gb|ADW13561.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1264

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 67/244 (27%), Gaps = 32/244 (13%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
             K +   L  +  + A+  L   + HD  + +  I    ++L              ++++
Sbjct: 881  RKKLEEQLRQAQKMEAIGQLAGGVAHDFNNILTVILGFGQMLQHSLPPDDPLRDHMEQIL 940

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 ++      L F R        V+         + +   I  D  ++ S++ E + 
Sbjct: 941  DAGDRATHLTRSLLAFSRKQVMVMQQVELNELTRRHAKFLVRIIGEDVSLKASFSKEPLL 1000

Query: 111  LSRERAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLK 152
            +  +  ++   L      A  ++P               +               + ++ 
Sbjct: 1001 VMADSGQLEQVLMNLATNARDAMPGGGELTIKTESVTLDKEFHRQYGYGMPGRYALVTVT 1060

Query: 153  INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              G      E   +I +    + +      +    V  +  ++   +            S
Sbjct: 1061 DTGTGM-DAETQQKIFEPFFTTKLPGRGTGLGLSIVYGIIKQHGGYITIFSQRGFGTTFS 1119

Query: 211  ALLE 214
              L 
Sbjct: 1120 IYLP 1123


>gi|229160391|ref|ZP_04288389.1| hypothetical protein bcere0009_11850 [Bacillus cereus R309803]
 gi|228623115|gb|EEK79943.1| hypothetical protein bcere0009_11850 [Bacillus cereus R309803]
          Length = 402

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLANVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKYIQLYIKDTGIGM-DTEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|118581413|ref|YP_902663.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118504123|gb|ABL00606.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 953

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M + + FN   +D + LL   I HD  + + +I  ++ L      E       +     +
Sbjct: 569 MEEEL-FNARKLDSIGLLAGGIAHDFNNLLTSILGNISLTRMQVGEGDRLRRNLDEAEKA 627

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
           S+ A    + +         V   + L  I +    F     R    +         +  
Sbjct: 628 SLRAKDLTQQLLTFSRGGAPVRKTVSLTAIIRDSATFTLSGSRTTCRFQIPDDLYPVDVD 687

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLAR 159
               ++++ NL + A  ++P GG++ I   +                   S++  G    
Sbjct: 688 EGQFSQVINNLVLNADQAMPAGGEIEIVCANVTLARESHLPLPAGAYVRISVRDRGEGI- 746

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I D    +  +   +    V  +   +   +            +  L 
Sbjct: 747 PEELVPRIFDPYFTTKKEGKGLGLATVYSIIRNHDGHISVSSSPGQGTAFTIHLP 801


>gi|117925093|ref|YP_865710.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608849|gb|ABK44304.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 871

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 64/238 (26%), Gaps = 26/238 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +N       M+ V  L   I HD  + + AI    EL    + +       +Q +  +  
Sbjct: 489 ENQLRQARKMEAVGTLAGGIAHDFNNILSAILGFTELTFNQVPQESRAYRNLQQVYDAGN 548

Query: 59  SAIIRLKFMRLAFGY----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A   +K +            ++D +  + D   ++   +    ++       ++ +  +
Sbjct: 549 RARDLVKRLLDFSRPSDVGMVAMDPITVIRDALTLLRATLPSSIQIITDIPKMELLVRAD 608

Query: 115 RAKILLNLFMVAHASLPRGGKVT-----------------ISVQDSKNENIFSLKINGNL 157
             ++   +  +   +     K                    +     N    S++  G  
Sbjct: 609 PTQLQQVMMNLCTNAARAMRKDQGGSLTVTVKRQEIREELPNALHKGNYICISVQDTGCG 668

Query: 158 ARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           S +     +    V  + H++   +  E       V    L 
Sbjct: 669 IPTHHLEHIFDPFFTTSKLGEGTGLGLSVVHGIVHKHGGTVTVESEIGVGSVFRVYLP 726


>gi|253568196|ref|ZP_04845607.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
 gi|251842269|gb|EES70349.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
          Length = 499

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 59/233 (25%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  F        +I +   + +        +    + 
Sbjct: 320 NSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKEQTMKPISEIEIRASLPNE 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +    +++ N    A                    +     ++  G+      
Sbjct: 380 DVYINTDATRLKQVISNFINNARKFTEKGYIHFGYAVDSVDASSVHVFVEDTGSGIPKEC 439

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          ++      +       +    +  +  E         +  L 
Sbjct: 440 QKEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDIFVESETGKGSRFTVTLP 492


>gi|198245723|ref|YP_002218089.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205357423|ref|ZP_02347567.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|197940239|gb|ACH77572.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205321829|gb|EDZ09668.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
          Length = 465

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  NG      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDNGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|197119323|ref|YP_002139750.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197088683|gb|ACH39954.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 584

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 59/227 (25%), Gaps = 25/227 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLK 65
             +     + + H++ +P+  I    E L       +    +  + +I+  +      ++
Sbjct: 356 EKIRRDFVANVSHELRTPVTVIKGYAETLLSGALAADPERAERFLLIIQNHADRLSGLVR 415

Query: 66  FMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KIDLSR 113
            +       +      +  +     I Q +       +   V                  
Sbjct: 416 DLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRG 475

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
              ++L+NL   A      G  V +      +    S++ +G      +   ++ +    
Sbjct: 476 RLEQVLINLLDNAIKYSETGKSVGVETAREGDLVRVSVRDSGIGIPEKDLP-RLFERFYR 534

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +    V  +   +   L  +       V S  L 
Sbjct: 535 VDEARSRDNGGTGLGLSIVKHIVQAHGGTLEVKSEQGKGSVFSFTLP 581


>gi|156742625|ref|YP_001432754.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii
           DSM 13941]
 gi|156233953|gb|ABU58736.1| PAS/PAC sensor hybrid histidine kinase [Roseiflexus castenholzii
           DSM 13941]
          Length = 637

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +     +  MD +  L   + HD  + +  I    EL    L +       +  I+ ++ 
Sbjct: 259 EERLLQMQKMDALGRLSGGVAHDFNNLLAVIAGCTELARQSLPDDHPAMLELIEIQHATE 318

Query: 59  SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    + +             +D    + D+ +++   I  D  +      +   +  +
Sbjct: 319 RASALTRQLLAFAHRQKFDPRPIDLNALIQDMHKLLRRLIREDITLHTRLAPDLWHVRAD 378

Query: 115 RAKILLNLFM---VAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156
             +I   L      A  ++                   +       +      ++   G 
Sbjct: 379 PGQIEQVLVNLAVNARDAMAVGGALTIATTNVVADEAFERRYPSLKAGEYVCLTVSDTGI 438

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +  +    +    +   +       +   +   +          V++  L 
Sbjct: 439 GM-DEETRRRAFEPFFTTKKPGEGTGLGLATCYGIVTRHGGAIDLASEPGCGTVVTIYLP 497

Query: 215 K 215
           +
Sbjct: 498 R 498


>gi|116753699|ref|YP_842817.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
 gi|116665150|gb|ABK14177.1| multi-sensor hybrid histidine kinase [Methanosaeta thermophila PT]
          Length = 1692

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 27/221 (12%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78
            + + H+I +P+ AI     LL    +  E    +     S    L+ +      +   + 
Sbjct: 1105 ANMSHEIRTPLNAIIGMSGLLLRTNVTPEQRSYVSAIQSSGNALLEMLADILDLSRIEEG 1164

Query: 79   ---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                                    +  E  I +   +        +  +    ++L+NL 
Sbjct: 1165 KLELDSSTFSILECVETCIDILSVKASEKQIELAYLIDEDVPELVLGDATRLRQVLVNLL 1224

Query: 124  MVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173
              A     RG          + +  +E  F ++  G     PEK  ++          + 
Sbjct: 1225 ENAIKFTERGEVFLRVICQYMDEDLSELHFFVRDTGIGI-PPEKMDRLFHTFSQVDSSIT 1283

Query: 174  STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       L      R+  E I          ++
Sbjct: 1284 RRYGGTGLGLAISKHLVEMMGGRIWAESIPGAGSTFHFTIK 1324


>gi|329849064|ref|ZP_08264092.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328844127|gb|EGF93696.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 703

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 57/238 (23%), Gaps = 26/238 (10%)

Query: 3   KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
           + +       +  +L      + + H+I +P+ AI     LL          Q    +  
Sbjct: 318 RELTQARRKAEEASLAKTEFLANMSHEIRTPMNAIIGIGTLLAMSQPLTARQQEFVKTLN 377

Query: 58  -------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQ 101
                        L   ++        +    L  I   +   + V  R         + 
Sbjct: 378 VSAKGLLELINDLLDVAKIEAHTVELEEVPFSLEQILLEVASMMTVRSREKGLTFTTAID 437

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          +I+LNL   A      GG        +++    S++  G      
Sbjct: 438 SIRGRTFAGDPMRLRQIVLNLCSNAVKFTQTGGVEIRVACGAEDSVAISVRDTGIGIAPE 497

Query: 162 EKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T          ++        +       LA      +  +    H    +  L 
Sbjct: 498 NLSTIFDKFVQADNSISRKYGGTGLGLAITRNLAELMGGAIAIDSQPGHGSTFTVTLP 555


>gi|320104022|ref|YP_004179613.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
 gi|319751304|gb|ADV63064.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
          Length = 482

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 75/236 (31%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     L    + A  LL + I H++ +P+ AI + +++L     +    + + L   
Sbjct: 215 LRQAQARTLHQEKMAAFGLLAAGIAHEVGNPLTAISSLIQMLRRKHDDPATAEKLDLIGN 274

Query: 59  SAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGE 107
             I     +R   G++         V     + D   + + +     R+           
Sbjct: 275 QVIRIQTILRELVGFSRPASTLETPVQLREVVADALSIAKYYHQFKNRIIETDLPDDLPR 334

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------SKNENIFSLKINGNLA 158
              +  +  +++LNL M A  +  +GG++  S +            +  +  +  +G   
Sbjct: 335 VRAVKDKLVQVVLNLTMNALDATGKGGRILWSARVVAEGDATGSQASGLVLRVDDDGPGV 394

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E    + + +  +      +  +    +  E    +  E            L 
Sbjct: 395 PQAEIPL-LFEAHHTTKRQGTGLGLFVCRGIVEELGGTITYEPGSLGGAGFVVRLP 449


>gi|229100783|ref|ZP_04231606.1| hypothetical protein bcere0020_59380 [Bacillus cereus Rock3-29]
 gi|229107179|ref|ZP_04237165.1| hypothetical protein bcere0019_57460 [Bacillus cereus Rock3-28]
 gi|228676272|gb|EEL31131.1| hypothetical protein bcere0019_57460 [Bacillus cereus Rock3-28]
 gi|228682633|gb|EEL36688.1| hypothetical protein bcere0020_59380 [Bacillus cereus Rock3-29]
          Length = 811

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 67/226 (29%), Gaps = 15/226 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58
           K       S  L     L + I H+I +P+ A+   ++LL        +  + ++     
Sbjct: 583 KTEELLRKSEKLAVVGQLSTAIAHEIKNPLTAMKGFIQLLQSLGNKDTEHYIDIVLSEIE 642

Query: 59  SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKID 110
                                  D  + +  +  ++E    ++         S T   + 
Sbjct: 643 RIDSITNEFMTLAKPEALEIKTNDLNVLMKQVVMLLEPQATMNCIQIKTQFTSDTSFILC 702

Query: 111 LSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++ +N+   A  +   GG++   I     +N+        G      E+   + 
Sbjct: 703 ECNQLKQVFINILKNAIEATSMGGEILIQIQYAPDQNQVNIRFTDYGCGI-EQERIPYLG 761

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +   +       +  +++ ++  E        ++  L 
Sbjct: 762 EPFYSLKENGIGLGLMICYKIIEKHQGKIFIESEVGKGTTVNIDLP 807


>gi|258511694|ref|YP_003185128.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257478420|gb|ACV58739.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 590

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 62/218 (28%), Gaps = 24/218 (11%)

Query: 20  SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM------- 67
           + + H++ +P+  +    E L     D+  +  E+ ++I   ++     +  +       
Sbjct: 360 ANVSHELRTPLSMLQGYTEALLDDISDDPDMRRELTEIIHDETLRMKRLVNDLLNLAQLE 419

Query: 68  -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILLN 121
                 +   VD    +  + +  +   + +  +    +     +  +       ++  N
Sbjct: 420 SGQFKLHFARVDLTQVMRRVARKFQALASDEDHLTFEVSIPDHPVMVDGDEDRLEQVFTN 479

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           L   A     +G                 +   G+     +    F +    +     + 
Sbjct: 480 LLDNAFRHTAQGTIRFELDIRHD-YAYVRVADTGSGIPEEDVPYIFERFYKADKARTRSR 538

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       L  E++  +L E         + +L 
Sbjct: 539 SGTGLGLAIARQLVIEHRGEILVESHLGEGTTFTVVLP 576


>gi|161505339|ref|YP_001572451.1| sensor protein ZraS [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160866686|gb|ABX23309.1| hypothetical protein SARI_03484 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 487

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 262 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 321

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 322 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 381

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 382 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 440

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 441 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 480


>gi|172059032|ref|YP_001815492.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
 gi|171991553|gb|ACB62475.1| multi-sensor signal transduction histidine kinase [Exiguobacterium
           sibiricum 255-15]
          Length = 616

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  + + LE L      +  +    ++  +  +   I  +  +     
Sbjct: 389 FVANVSHELRTPLTTMRSYLEALAEGAYQDEELAPRFLETTQNETERMIRLVTDLLQLSK 448

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-----ILLN 121
                     V         + +    +   +R++      K  +     +     +  N
Sbjct: 449 MDSKEYKMNKVRFDYIQFLNDILDRHDMTKPERIRFRRKIMKRKVYIRGDQDKLIQVADN 508

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTI 176
           +   A    P GG +T+         + S+K  G         + F +    +      I
Sbjct: 509 ILTNAIKYSPEGGTITVRTMLRAKRIVISIKDEGVGIPKANLQKIFERFYRVDKARARKI 568

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E        +   L 
Sbjct: 569 GGTGLGLSIAKDVVSAHGGDIWAESEWGRGTTIYFTLP 606


>gi|328954529|ref|YP_004371863.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454853|gb|AEB10682.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 824

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 67/231 (29%), Gaps = 19/231 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
            K +   L  S  L A+  L + + H+I +P+G I     L L+++  +    Q +    
Sbjct: 584 KKRLEDQLARSEKLAAVGQLSAGVAHEINNPLGGILVYSYLMLEDLAPDRPERQQVEKII 643

Query: 58  MSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109
             A          L F R        VD    L ++  +        D  ++     E  
Sbjct: 644 REATRCKEIIKGLLDFSRQQPFRLKPVDLNSMLAELLSLVENHLNFQDVGIKKKLAPELP 703

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFT 165
            +  ++ K+      +   +        +    +           +  NG     PE   
Sbjct: 704 PVLGDKNKLEQVFINLFMNASHAMAGHGVLTVATGQNVLGAVEIRVSDNGPGIH-PEHLH 762

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +        +       +  +++ R+  +            L 
Sbjct: 763 RIFDPFFSTKEVGRGVGLGLSISYGIIKQHRGRIYVDSTAPGGATFVIELP 813


>gi|298243981|ref|ZP_06967788.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297557035|gb|EFH90899.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 415

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           + +      ++ +  +   S   H + +P+ +I    E+L     D+      V+ L+R 
Sbjct: 179 LERAEELQHAAEERFSRFFSDASHQLRTPLTSIRGFTEVLLRGAKDDPETAQRVLTLMRN 238

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------- 108
                   +  +      +      +   D+  ++++ I   +         +       
Sbjct: 239 EGERMTALINNLLTLSRLSEHQPLKMQYIDLLDLVKESIEQARTQATDDRRMQISLRGEA 298

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE 162
                       ++L  L   A        + +I+VQ    + +    +  NG      E
Sbjct: 299 PFGLQANKERIKQLLYILLDNAVKHGMPAPEGSITVQLTKREQQIEVHVIDNGPGIAEDE 358

Query: 163 KFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +       +   ++  +  +   D     + +L 
Sbjct: 359 LKHIFEAFYHGQHQRTPGSGLGLAIAAAIVDAHQGHITVQRTPDAGSDFTFMLP 412


>gi|258625376|ref|ZP_05720273.1| C4-dicarboxylate transport sensor protein dctB [Vibrio mimicus
           VM603]
 gi|258582367|gb|EEW07219.1| C4-dicarboxylate transport sensor protein dctB [Vibrio mimicus
           VM603]
          Length = 597

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLTR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103
           I   +       + ++     + S +          +          +  +   +  +V 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTAQFKAQMTKLELCEVD 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +    I +Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALDGQAERLVQIRLQISEQQVQIFVDDNGPGIGL- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   ++ +    +  +   +       + H  +  L               L +
Sbjct: 537 ETLPKLFEPFHTTKKNGLGLGLSISQQILHSMQGELNVATAPIGGARFIISLPR 590


>gi|153854057|ref|ZP_01995390.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814]
 gi|149753439|gb|EDM63370.1| hypothetical protein DORLON_01381 [Dorea longicatena DSM 13814]
          Length = 470

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + HD  SP+ +I   +E + +      + ++ +++I   +       + +     +
Sbjct: 249 FVANVSHDFRSPLTSIKGYVEAMTDGTIPPELHEKYLKIILFETERLTDLTQDLLTLNEF 308

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWTGEKIDLSRERAKILLN 121
             +   L         +   +A                V  +         R+  ++L N
Sbjct: 309 DTNHLLLNREVFDIHEMIKHVAASFEGVCTQKKISIELVFATKHLNVNADKRKIQQVLYN 368

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177
           L   A         VTI   D   +   S+K NG           + +    ++    D 
Sbjct: 369 LLDNAIKFSDPNSIVTIETTDRGEKVYTSVKDNGMGIPRSALGKIWERFYKSDLSRGKDK 428

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V      +   +     +      S  L K
Sbjct: 429 KGTGLGLAIVKEAIQAHGENITVVSTEGVGTEFSFSLPK 467


>gi|163848872|ref|YP_001636916.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526828|ref|YP_002571299.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163670161|gb|ABY36527.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450707|gb|ACM54973.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1043

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIR 54
           +        M+ +  L   I HD  + +  I  ++EL       D           Q   
Sbjct: 659 QTQLLQAQKMEAIGQLAGGIAHDFNNILTVITGNVELAMLEIAPDHPIYPELESVRQSTA 718

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +S      L F R   G    ++    + DI  +++  I     +++        ++ +
Sbjct: 719 RASELVRQLLTFARRQPGQPKPINVNHQINDIMNMLKRIIGEHIHLRLELCEPIDSINID 778

Query: 115 RAK---ILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKINGN 156
             +   +L+NL + A  ++P GG++TI                        + S+   G 
Sbjct: 779 PHQFEQVLMNLVVNARDAMPNGGELTIRTSMQYVEAGNIPAFSQAKAGKYVLLSVCDTGI 838

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     I +    +        +       +  ++      +         +  L 
Sbjct: 839 GIDET-IRGHIFEPYFTTKPMGKGSGLGLAICSGIVTQHGGFFTVDSQPGAGSCFTVALP 897


>gi|319951281|ref|ZP_08025116.1| two-component histidine kinase PhoR [Dietzia cinnamea P4]
 gi|319435054|gb|EFV90339.1| two-component histidine kinase PhoR [Dietzia cinnamea P4]
          Length = 487

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 57/210 (27%), Gaps = 18/210 (8%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           HD+ +P+  I    EL  +   +D    M+ I   +    + ++ +              
Sbjct: 275 HDLRTPLTTIRGFAELHRQGAADDTDRLMRRIESEARRMGVLVEDLLTLARMDEQRPIAR 334

Query: 82  GLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLFMVAHASL 130
              D+  +  D +   + +               T E +       ++L NL   A    
Sbjct: 335 DRVDLLALAADAVHDARVLAPDRTVGLEVIDGPGTPEVLGDEVRLRQVLGNLVDNALRHT 394

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYY 185
           P G  +T+ V    ++ +  +   G      E                S+     +    
Sbjct: 395 PPGVPMTVRVGTEADDALLEVADAGPGMTADEAERAFERFFRADASRTSSTGGSGLGLAI 454

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              L   +   +  E            L +
Sbjct: 455 ARSLVEAHDGSVTVETAPGRGATFRVRLPR 484


>gi|315658231|ref|ZP_07911103.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590]
 gi|315496560|gb|EFU84883.1| sensor histidine kinase SrrB [Staphylococcus lugdunensis M23590]
          Length = 588

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 62/237 (26%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M      +    D +A+    + H++ +PI  +    E + +          E + ++  
Sbjct: 355 MTNEHNLDQMKKDFIAI----VSHELRTPISLLQGYTESIVDGIVTEPEEIKESLSIVLD 410

Query: 56  SSMSAIIRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +  +                    +           Q   D          +
Sbjct: 411 ETNRLNRLVNELLNVARMDAEGLSVNKEIQPIAPLLNKIQTKYRQQASDLSLNMYLTPET 470

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                   S    ++L NL   A      G  ++I+ +D+   N+  +   G+       
Sbjct: 471 NDALWYYDSDRIDQVLTNLIDNATRYTQPGDTISITSEDTDKYNVLHINDTGSGIAPEHL 530

Query: 163 --KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +      +         +  +   ++  E+   +    +       +  L K
Sbjct: 531 NLVFDRFYKVEASRTRGKQGTGLGLFICKMIIEEHGGTITVSSVVGEGTTFTIKLPK 587


>gi|323343405|ref|ZP_08083632.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella oralis ATCC 33269]
 gi|323095224|gb|EFZ37798.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella oralis ATCC 33269]
          Length = 880

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +    ++  L     + I H++ +P+  I + +E + +        + +       
Sbjct: 360 MKRRMEEEATNAKL--QFFTNISHELRTPLTLIADPVEHIIDDENLTRQQRTMLQIVRRN 417

Query: 61  IIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWT 105
           +  L  +          +         D  +     + +        K+     ++ S  
Sbjct: 418 VNILTRLVGEILDFRKIQNGKMTLTLSDFNLSDCLKQWIDVFAATARKKKIALELECSDD 477

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  +I  NL   A      GG++T+      ++    +   G      E   
Sbjct: 478 IRMRADIYKVERICYNLLSNAVKFTQEGGRITLKAATDGDKVSICVTDTGMGIAKDELS- 536

Query: 166 QIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +   +          I    V   A  +    + +  +      +  L 
Sbjct: 537 RIFERFYQVKDSYGGGTGIGLAIVKSFAELHHGTAVVDSEEGKGTTFTVTLP 588


>gi|253577341|ref|ZP_04854658.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843241|gb|EES71272.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 632

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQL 52
           K       S  L  V  L + + H+I +P+  +   L++             +    +  
Sbjct: 393 KMEDLLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQMQQRTRVVNVMHTDVMLAELDR 452

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDL 111
           I L     +I  K   + F       ++  +  +         ++  V  S +       
Sbjct: 453 INLIVSEFLILAKPQAVQFQIKDVRFTMGDVVSLLDSEAHLHNIEFEVHFSPSPVLVHCE 512

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDG 170
             +  ++ +NL   A  ++P+GGK+ + V++  +   +  +   G      ++  ++ + 
Sbjct: 513 ENQLKQVFINLLKNAMEAMPKGGKILLQVEEDDSGFAVLRVIDEGEGI-SKDRLQKLGEP 571

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   ++  L  E        ++  L 
Sbjct: 572 FYTNKEKGTGLGLMISQRIIEGHRGTLKIESELGKGTAVTITLP 615


>gi|237802074|ref|ZP_04590535.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331024930|gb|EGI04986.1| sensor histidine kinase [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 263

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 73/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 24  EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 83

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V      +     +
Sbjct: 84  RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 143

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 144 GDPQRLAQVLINLLSNARDASPAGSTVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 202

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  +++ +   D        +   L +
Sbjct: 203 PFFTTKDPGEGTGLGLALVYSIVEEHYGQIIIDSPADPEQQRGTRIRVTLPR 254


>gi|254446715|ref|ZP_05060190.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198256140|gb|EDY80449.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 778

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +   +    S+    +   S + H++ +P+ AI     LL +  ++DE    I++   S+
Sbjct: 261 LRTAMEKAQSANKAKSEFLSTMSHELRTPMNAIVGMSSLLMDKDLDDERQSYIKIIRSSS 320

Query: 61  IIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSW 104
              L        + ++  G+    D    L +  +   D +A  +R         +    
Sbjct: 321 DALLSLINDVLDYSKIESGHLDLEDQPFNLVNCLEEAMDIVAAPRRDAPIDFIVTIDPKL 380

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLAR 159
                       ++L+NL   A     +G     +               ++   G    
Sbjct: 381 PAIVKGDVTRLRQVLINLLGNAVKFTQKGHVWLEAKCCVVGESENVFASIAIHDTGIGI- 439

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++  ++          +        +       LA      +  E            +
Sbjct: 440 PDDRKHRLFQTFSQVDSSMTRRFGGTGLGLAISQRLAMAMGGIIEVESEVGSGSTFQFTI 499

Query: 214 E 214
            
Sbjct: 500 P 500


>gi|163814592|ref|ZP_02205981.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
 gi|158450227|gb|EDP27222.1| hypothetical protein COPEUT_00743 [Coprococcus eutactus ATCC 27759]
          Length = 528

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MA  +  +           S I HD  SP+ +I   +E + +        ++ + ++   
Sbjct: 255 MADELSRSNEYRKS---FISNISHDFRSPLTSIKGYIEAMLDGTIPLERHEKYLGIVLNE 311

Query: 57  SMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSW 104
           +       + +               S   + DI     +      +        V ++ 
Sbjct: 312 AQRLTKLTQGLLELNNFDSFDLQLDKSNFDIRDIITPTVNTFEKRCQDRGIFLESVFLTD 371

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FP 161
                    +  +++ NL   A    P G ++ + V +  N+   S+K  G         
Sbjct: 372 NTIVYADRTKIQQVIYNLVDNAIKFTPEGRQIRVQVTEKDNKIFISVKDEGIGIPKDAQK 431

Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + F +    +     D     +       +   +  ++     +         L K
Sbjct: 432 KVFERFYKTDPSRGKDKTGTGLGLAITKEIIKAHGEQITLTSEEGKGSEFIFSLPK 487


>gi|91773017|ref|YP_565709.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91712032|gb|ABE51959.1| HATPase domain-containing multisensor signal transduction histidine
           kinase [Methanococcoides burtonii DSM 6242]
          Length = 631

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 5   ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
               +++ +L +L        S + H++ +P+ +I    EL+ +  +     Q   +   
Sbjct: 391 EELAIANEELKSLDQMKDRFLSNVSHELKTPLTSIKGYTELIYDESLGTLSEQQKEVEKT 450

Query: 58  -----MSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                      +  +            + +       I    ++ +          V+  
Sbjct: 451 VLRNANRLKRLVDSLLYISRAQSGNVQYLFEPVSIVEIVEMTLQDLKIQIEEKKLAVEKD 510

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +   ++ +R K+   L      +    P GG +  ++++        LK NG     
Sbjct: 511 IPNDIPTINGDRDKLTDMLTNMVDNSIKFTPEGGSLKFTIKEEDEFIHIVLKDNGIGIPP 570

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                                    +  Y    +   +K ++  E   ++    +   L 
Sbjct: 571 DMIPMLFQRFYQIDASRTRKYGGTGLGLYICKEIVTAHKGKIWVESKGENKGTEMHIQLP 630

Query: 215 K 215
           K
Sbjct: 631 K 631


>gi|289767047|ref|ZP_06526425.1| two component system histidine kinase [Streptomyces lividans TK24]
 gi|289697246|gb|EFD64675.1| two component system histidine kinase [Streptomyces lividans TK24]
          Length = 501

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----------V 43
           MA+ +     + +L  L        + + H++ +P+ A+    E+LDE            
Sbjct: 258 MAETLER--DAAELRRLEAGARRFAADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTE 315

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                + + +R  +      ++  R        +   VD    +    Q+         R
Sbjct: 316 DAVRLISEEVRTLTRMVEDLMEVSRFDAKAAPVHPEDVDLRTLVTKTLQLRGWAHDERVR 375

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +          R    +L NL   A         VT++V+ S +    ++   G    
Sbjct: 376 ADLPEPAPVRVDPRRIDVVLGNLVANALHHGG--PPVTVAVRVSDDRVRVTVTDRGPGIP 433

Query: 160 F---PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               P  F +    +          +        A  +   L          V +  L +
Sbjct: 434 DDALPYVFDRFYKADAARPRSGGSGLGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 493


>gi|322421916|ref|YP_004201139.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320128303|gb|ADW15863.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 763

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 70/233 (30%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSS 57
           +++     L    L A+  + + I H++  P+ +I      L     ++        L  
Sbjct: 530 LSEAQESLLQKERLAAIGEMAAGIAHELKGPLVSIGGFANRLARKLPQESGERAHADLIV 589

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKIDL 111
              I     +     ++          +I +++ +          +K++ V     +   
Sbjct: 590 REVIRLEGILSEILLFSKKTTICYTRCNIVEIVRESLAVVTPPLEEKQITVDTKFPRQRQ 649

Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
                 ++  ++ +N+ + A  ++  GG + I V  S+ +        +   G      +
Sbjct: 650 VLLGDSQQLKQVFINIILNALDAMGSGGNLAIQVLSSELDGKEAVTVKIADTGGGIPLEQ 709

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               I      +      +       +   +  ++         V    +L K
Sbjct: 710 LN-HIFTPFFTTKESGTGLGLPIANRIIINHGGKIQITNHPGEGVEFRVILPK 761


>gi|228998390|ref|ZP_04157981.1| hypothetical protein bmyco0003_29520 [Bacillus mycoides Rock3-17]
 gi|228761311|gb|EEM10266.1| hypothetical protein bmyco0003_29520 [Bacillus mycoides Rock3-17]
          Length = 481

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52
           + K       S  L     L + I H+I +P+ A+   L LL     E        ++  
Sbjct: 243 LKKTEKLLRKSEKLAVVGQLTAGIAHEIRNPLTALKGFLTLLQPDISEQNKWYIDVMLSE 302

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       S      + ++   ++   I     + +       ++
Sbjct: 303 ISQMESITSQFMAMSKPQVLSIHSHQIQSLIEEVVTFILPTAIMHSTHIIMDHLSTMPEI 362

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
             +  ++          A  ++PRGG + I  +   +N  +  +   G      ++ +++
Sbjct: 363 QCDGNQLKQVFINVLKNAIEAMPRGGNIFIQTKQVDENFILIRIIDEGCGI-PEDRISRL 421

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 422 GEPFYSLKEKGTGLGLMMCYKIIEEHYGKLQISSELNKGTTVDIRLP 468


>gi|2765035|emb|CAA71030.1| sensory histidine protein kinase [Calothrix viguieri]
          Length = 744

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           +     L + +   L     + + H++ +P+  I    +LL    ++         +   
Sbjct: 500 QEQSARLKAEEANRLKDEFLAVLSHELRTPLNPILGWTKLLRAGKLDSAKTDYALETIER 559

Query: 60  AIIRLKFMRLAF-------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                  +                        +      IE V     A   +++  +  
Sbjct: 560 NAKLQTQLIGDLLDVSRILQGKLSLNMAAVNLAPTISAAIETVQLAAQAKSIQIETVFDP 619

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +  +     +++ NL   A      GG+V I ++   ++    +   G        
Sbjct: 620 NVGQVLGDSTRLQQVVWNLLSNAVKFTKNGGRVEIRLECVDSQAEIKVSDTGKGISPDFL 679

Query: 164 FT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214
                  +  D  +        +    V  L   +   +  E           +  L 
Sbjct: 680 PHVFESFRQADATITRKFGGLGLGLAIVRHLVELHGGTIYAES-PGEDLGATFTVRLP 736


>gi|78486517|ref|YP_392442.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
 gi|78364803|gb|ABB42768.1| PAS/PAC sensor hybrid histidine kinase [Thiomicrospira crunogena
            XCL-2]
          Length = 1410

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 65/241 (26%), Gaps = 29/241 (12%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +      S+    +   + + H+I +P+ AI    ELL+E   E  + + IR    + 
Sbjct: 910  LQQAKEQAESASQTKSQFLANMSHEIRTPMNAIIGFTELLNEQVTEPRLKRYIRTIQAAG 969

Query: 61   IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                  +        S+   IG   +  +    +     +  + 
Sbjct: 970  KTLLTLINDILDLSKIEAGKMDLDKKAVNPHSLFDEIGQIFMINIQRKGLDFLVDIDKTL 1029

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLA 158
                +       +IL NL   A     +           +    SK + +  +   G   
Sbjct: 1030 PEGLLLDGVRLRQILFNLLGNAVKFTEQGYVKLKVSACDVDEHHSKLDILIQVSDTGIGI 1089

Query: 159  RFPEKFTQIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               ++  +I +   +             +       L +     +  E         + L
Sbjct: 1090 -PEDQQARIFNAFEQRENQDVQKFGGTGLGLAITQRLVNMMGGDIWVESTPGQGTTFNLL 1148

Query: 213  L 213
            +
Sbjct: 1149 I 1149


>gi|332995706|gb|AEF05761.1| osmolarity sensor protein [Alteromonas sp. SN2]
          Length = 438

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 62/218 (28%), Gaps = 7/218 (3%)

Query: 4   NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMS 59
            +   +  ++    L+ + I HD+ +P+  I  + E+L E     +      +  ++++ 
Sbjct: 218 RMNQGIKQLEHDRTLMTAGISHDLRTPLTRIRLASEMLPESQNWIKDGIVNDIEDMNAII 277

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                           + D    + ++ Q           ++++             +++
Sbjct: 278 DQFIDYARYDTEEIKENTDLNSLIIELAQARHIEEKHHIALKLNDIPLLDLRRVAMKRVI 337

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV---DGNVESTI 176
            N+   A         ++     ++      ++  G      E     +    G+   + 
Sbjct: 338 DNIIENAFRYGSDNIVISTFYNRNEKRVYCKIRDFGPGIPAAELEHVFMPFAQGDKARST 397

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +  +   +   +         ++    L 
Sbjct: 398 SGSGLGLSIIRRIVEAHDGGVELRNHPQQGLIAEFYLP 435


>gi|290892746|ref|ZP_06555738.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
 gi|290557806|gb|EFD91328.1| sensor histidine kinase [Listeria monocytogenes FSL J2-071]
          Length = 459

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P+GG + I + D        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQIHLYDEGTNVFVEVQDSGVGISKSDMAKIFE 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458


>gi|218232323|ref|YP_002366680.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218160280|gb|ACK60272.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 357

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      +  +G      +    
Sbjct: 240 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIHDSGIGILEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRIP 352


>gi|110679868|ref|YP_682875.1| phosphate regulon sensor protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455984|gb|ABG32189.1| phosphate regulon sensor protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 347

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 16/234 (6%), Positives = 62/234 (26%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + + H++ +P+ A+   +E L     ++    D  + ++   +      +
Sbjct: 108 QADQMRRDFVANVSHELRTPLTALMGFIETLRGPAREDAAARDRFLDIMEGEAGRMNRLV 167

Query: 65  KFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRER 115
             +       G+                     +          ++     + + L  + 
Sbjct: 168 GDLLSLSRVEGNQRVRPQDRVNLSDVVQSVARTLAPLANDTSVVLECDLPQQPVILIGDA 227

Query: 116 AKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLARFPEKF- 164
            +++  +  +   ++  G           +V           + S+   G          
Sbjct: 228 DQLMQVITNLVENAVKYGGSGGRVAIKLTEVARDTSLRAPGVLISVTDFGPGIDPVHLPR 287

Query: 165 --TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    +      +    +    V  + + ++ RL  +         + +L 
Sbjct: 288 LTERFYRADSHRSRALGGTGLGLAIVKHIINRHRGRLRIDSELGQGSTFTVVLP 341


>gi|114566583|ref|YP_753737.1| signal transduction histidine kinase nitrogen specific-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337518|gb|ABI68366.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 493

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 70/217 (32%), Gaps = 12/217 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII----- 62
            L  ++LV  + + I H+I +P+  +   L+++ E  +  + ++   L            
Sbjct: 270 RLDRLNLVGEMAASIGHEIRNPMTTVRGYLQIMRENKVYIQELEYFDLMIEELDRANAII 329

Query: 63  -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                  K   +          +  L  + Q          ++++      +  ++E  +
Sbjct: 330 TDFLSLAKNKMVDMKPGDLNAIINKLLPLIQAKALSKDQYIKLELGDIPYLLLDNKEIQQ 389

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           ++LNL      S+   G VTI         I +++  G          ++    + +  +
Sbjct: 390 LILNLVNNGLESMSLPGYVTIKTYMEDEAVILAVQDQGKGIDPS-LLDKLGTPFLTTKEN 448

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +A ++  ++  E   D          
Sbjct: 449 GTGLGLAVCYRIAVQHNAKIDVETSAD-GTTFYLRFP 484


>gi|242373792|ref|ZP_04819366.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
 gi|242348529|gb|EES40131.1| histidine kinase [Staphylococcus epidermidis M23864:W1]
          Length = 587

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 55/217 (25%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           + + H++ +PI  +    E + +          + + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGVVTEPDEIRDSLAVVLDESKRLNRLVNELLNVARMD 423

Query: 75  GS---VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KIDLSRERAKILLNL 122
                V+  +   D            +   +  T E                  ++L NL
Sbjct: 424 AEGLSVEKEVQPIDDLLNKMKAKYRMQAEDLDLTMEFNSGNDNQLWDYDMDRMDQVLTNL 483

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID-- 177
              A      G  + ++       NI  +   G         + F +    +        
Sbjct: 484 IDNASRYTQPGDTIAVTTAKDNRYNILYISDTGTGIAPEHLQQVFDRFYKVDASRKRGKQ 543

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   ++  E+  ++  E            L 
Sbjct: 544 GTGLGLFICKMIIEEHGGKIEVESELGKGTTFIIKLP 580


>gi|297567355|ref|YP_003686327.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
 gi|296851804|gb|ADH64819.1| PAS/PAC sensor signal transduction histidine kinase [Meiothermus
           silvanus DSM 9946]
          Length = 384

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 58/230 (25%), Gaps = 18/230 (7%)

Query: 3   KNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           +     L  ++       +   H++ +P+ AI  +LELL          ++  +      
Sbjct: 146 RQSEARLREINQAQQRFVADAAHELRAPLTAIQGNLELLYRYPEMPPQDRMESVIQALQE 205

Query: 62  I------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                          +          S++    L +  +         +          +
Sbjct: 206 ARRLGRLVADMLALARGDAGHRLKRESIELDRVLLEAFESTCHLSQQHRLTHELEPVRLV 265

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
                  ++ L L   A    P GG+V +++   +      +   G+     +    F +
Sbjct: 266 GDRDYLKQLALILLDNALKYTPPGGQVHLALSRQEGHAELQVSDTGSGIAPQDLPHVFDR 325

Query: 167 IVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +           +       +  ++   +  E            L 
Sbjct: 326 FYRADQSRRRDPGGSGLGLSIAKWIVEQHGGEIWLESEPGQGTRAVVRLP 375


>gi|163736451|ref|ZP_02143870.1| histidine kinase [Phaeobacter gallaeciensis BS107]
 gi|161390321|gb|EDQ14671.1| histidine kinase [Phaeobacter gallaeciensis BS107]
          Length = 346

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 19/239 (7%), Positives = 64/239 (26%), Gaps = 27/239 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           +I     +  +     + + H++ +P+ A+   +E L      +    D  + +++  + 
Sbjct: 108 DITDREQASQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDAPARDRFLTIMQGEAN 167

Query: 59  SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +                           ++ +     A D ++ +    E  
Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPREQLDLGAHLASTLKSLEPVAEAADVQLFLEIPEEPT 227

Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161
            ++ +  ++      +   ++  G                         +  NGN     
Sbjct: 228 LVTGDPDQLQQVFTNLVENAIKYGGDQVTLRLRTRDRDPAVRAAAVRVEVIDNGNGIDPV 287

Query: 162 EKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +      +         +    V  + + ++ R+  E       V + +L +
Sbjct: 288 HLPRLTERFYRVDSHRSREQGGTGLGLAIVKHIVNRHRGRMRVESSAATGTVFTVILPR 346


>gi|332533237|ref|ZP_08409104.1| osmolarity sensory histidine kinase EnvZ [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037316|gb|EGI73771.1| osmolarity sensory histidine kinase EnvZ [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 438

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 18/206 (8%), Positives = 59/206 (28%), Gaps = 10/206 (4%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           LL + + HD+ +P+  I  + E++ +      + + I          +        +   
Sbjct: 227 LLMAGVSHDLRTPLTRIRLATEMMVDEDD--YLREGIIYDIEDMNGIIDQFIEYLRHHKR 284

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLNLFMVAHASLP 131
            +      +          +  +  +++       +         +++ N+   A     
Sbjct: 285 EELSCEDINALVAEVVNSELQHQRTITFKSNPNIGNIPLSSVAIKRVITNMIGNALRYSE 344

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVIL 188
              +V      +K   + ++  +G      E    F     G+     +   +    +  
Sbjct: 345 GDIEVLSYFNSNKKYVVIAVNDSGPGIPENELESVFEPFKQGDAARGSEGSGLGLAIIKR 404

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +  ++  E   +  +     L 
Sbjct: 405 IVDMHDGKVKLENRPEGGLSAQVYLP 430


>gi|326201973|ref|ZP_08191843.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325987768|gb|EGD48594.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 512

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 74/223 (33%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM 67
            +L     + + H++ +P+ +I   +E + +       +   + ++R  +      +  +
Sbjct: 281 EELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPPERQKGYLTIVRDETNRLNRLVNDL 340

Query: 68  RLAFGY--------TGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
                             D    +      +     + +  ++ ++  + + +S ++   
Sbjct: 341 LDLAKMESGELTLTMKPFDINELIRICVIKLETLITSKNLEIEANFEIDNMMVSADKDSI 400

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172
            ++++NL   A       GK+ +    +K++   S+K NG      +    + +    + 
Sbjct: 401 ERVIINLLHNAVKFSNENGKIIVETAKNKDKIYVSVKDNGIGIDGDDKKRIWDRFYKSDK 460

Query: 173 ESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               D     +    V  +  E+K  +  E         +  L
Sbjct: 461 SRGKDKTGTGLGLAIVKNIVTEHKQDIWVESEVGKGTKFTFTL 503


>gi|229086214|ref|ZP_04218414.1| hypothetical protein bcere0022_28070 [Bacillus cereus Rock3-44]
 gi|228697096|gb|EEL49881.1| hypothetical protein bcere0022_28070 [Bacillus cereus Rock3-44]
          Length = 246

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 18/227 (7%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL     E        ++  
Sbjct: 8   LKETEKLLRRSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLKPDITEQNKWYVDVMLSE 67

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       S      + ++   ++   I  +  + +  +    ++
Sbjct: 68  ISQMESITSQFMAMSKPQVLSIHSCQIKKLIEEVVTFILPTAIMHNVHIIMDHSSVLPEI 127

Query: 112 SRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             +  ++      +   ++            +    +   +  +   G      ++ +++
Sbjct: 128 QCDGNQLKQVFINIFKNAIEAMPTGGKIFIRTQWIEERSVLIRIIDEGCGI-PQDRISRL 186

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E++ +L      +    +   L 
Sbjct: 187 GEPFYSLKEKGTGLGLMMCYKIIEEHQGKLEITSELNTGTTVDICLP 233


>gi|294055632|ref|YP_003549290.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293614965|gb|ADE55120.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 438

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 64/233 (27%), Gaps = 26/233 (11%)

Query: 8   NLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA 60
            L S+++      + + H++ +P+  I    E L E             ++ I  ++   
Sbjct: 186 RLKSLEMVRREFVANVSHELRTPLTIIKGFAETLVEDNASLPVEARARFLEKILNNAERL 245

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SWTGEK 108
            + ++ +          D +       + + +    +   ++               G+ 
Sbjct: 246 HVLVEDLLTLSRLESKPDQVDPQLYSLRQLMEDTIENYSSRLNPGVQAIELKYDDRVGDF 305

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQ 166
                   +++ NL        P   ++++SV   +  +    S++ +G      +    
Sbjct: 306 SFDRFRLNQVVDNLIENTFRYAPEFTQLSLSVDYDEETDFVECSVQDDGPGIPAKDVPHI 365

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +    +  +   +   +  E        +   L 
Sbjct: 366 FERFYRVDKGRSRERGGTGLGLSIMKHIVQLHGGTVWAESELGEGTKICFTLP 418


>gi|224367364|ref|YP_002601527.1| two-component hybrid sensor and response regulator histidine kinase
           (phoR-like protein) [Desulfobacterium autotrophicum
           HRM2]
 gi|223690080|gb|ACN13363.1| two-component hybrid sensor and response regulator histidine kinase
           (phoR-like protein) [Desulfobacterium autotrophicum
           HRM2]
          Length = 588

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 65/221 (29%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAIIRLKFMR--- 68
             + + H++ +P+ +I   +E L ++         +  + +I  +    I  +  +    
Sbjct: 367 FAANVSHELKTPLTSIKGFIETLQDLDESEALTRREGFLTIIEKNVNRMIALVDDLMALS 426

Query: 69  ---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                      F        +       +   +   V  +  +S        +    + L
Sbjct: 427 KLERQEGDKTVFEPHDLSAVIKSARAACRTRSESGRVTVKADLSGPLFIPMDTLLVEQAL 486

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A      GG+V I V   K   +  +  +G      E  ++I +          
Sbjct: 487 VNLLDNALKYSEPGGEVLIQVAQEKGSALIRVIDSGPGI-GQEHLSRIFERFYRVDSARS 545

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +    V  +   +   +  E   D   +    L 
Sbjct: 546 TDMGGTGLGLAIVKHIVQYHNGTIRVESTPDKGAMFEISLP 586


>gi|204931274|ref|ZP_03222034.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204319889|gb|EDZ05096.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 465

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLALQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  NG      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDNGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|186686039|ref|YP_001869235.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186468491|gb|ACC84292.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 503

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + K +        L +L  S + H+  +P+  I  ++EL++              ++ I+
Sbjct: 259 LEKALEKEQELNRLKSLFISTVSHEFRNPLTVIQTAVELIEMKGGNLTDEKRGIYLKRIQ 318

Query: 55  LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +  S    ++            +             + L     ++E           S
Sbjct: 319 GAVQSMEKLMEEVLFVGRAEAKKLVYNPAPLNLEQFCLELIKDFSIVESSECEVVFTCHS 378

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161
              + +        +  NL   A    PRGGK+  +      +   IF ++  G      
Sbjct: 379 DRTDAVMDEGLLNYMFGNLLSNAIKYSPRGGKIQFNLICDPIEKVAIFYIQDQGMGIPEA 438

Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F     G+   +I    +    V      ++ ++            + +L 
Sbjct: 439 DQARLFESFYRGSNVQSIKGTGLGLVIVKRCVDAHRGQISVTSQIGVGTTFTVILP 494


>gi|319653245|ref|ZP_08007347.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2]
 gi|317395166|gb|EFV75902.1| hypothetical protein HMPREF1013_03962 [Bacillus sp. 2_A_57_CT2]
          Length = 454

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 66/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++I      +    +      S I H++ +P+  I    +++ +        ++ + +
Sbjct: 206 LARSIQLLADDLNYLREERNEFLSSISHELRTPLTYIKGYADIVQKRNLSPEERNQYLSI 265

Query: 53  IRLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   +      +K +                     D +  +            +   V 
Sbjct: 266 ILEETNRLSDMVKNLFDLAKIDKNTFDIKKRSIDLKDFMKKIETKFSPAFTEKGMLLSVN 325

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              +      +    +I+ NL   A      G K TI++  +K   I ++K  G      
Sbjct: 326 CRESITISADASRLEQIIFNLLDNAIKYSTAGDKTTININRTKKHVIINIKDTGRGISEE 385

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E                  +    +    V  L H +   +     +        + +
Sbjct: 386 ELPFIFNRFFRVDKSRARALGGTGLGLAIVKELVHAHGGTISVCSREGDGTEFEIVFK 443


>gi|237719384|ref|ZP_04549865.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451244|gb|EEO57035.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 570

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    E++ +   E+E  + +++ S + 
Sbjct: 333 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEERKEFVKIISSNN 392

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
           I+ L+ +               +T +   +  L +              +Q+     +  
Sbjct: 393 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQ 452

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A    P+G        +   +   F +K  G      +K 
Sbjct: 453 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 511

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +  V   S I    +      ++       +  E  +         + +
Sbjct: 512 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 564


>gi|229529050|ref|ZP_04418440.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae 12129(1)]
 gi|229332824|gb|EEN98310.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae 12129(1)]
          Length = 597

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 66/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    + +    +  +   +       + H  +  L            +  L 
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLP 589


>gi|258516161|ref|YP_003192383.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779866|gb|ACV63760.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 507

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 12/218 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     L  +DLV  + + I H+I +P+  +   L+LL       +  +   L      
Sbjct: 278 AEREIARLDRLDLVGEMAAGIAHEIRNPMTTVRGFLQLLGTKKECVKYQEYYSLMIDELD 337

Query: 62  I----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                        +     F        +  L  +          +   Q     + +  
Sbjct: 338 RANSIISEFLSLARNNTNDFKLQSLNCIINVLMPLITADAIKSDKNIIAQYGDIQDLLLN 397

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +E  +I+LNL      ++P G  +TI      +E + S++  G     P+   ++    
Sbjct: 398 EQEIRQIVLNLTRNGLEAMPSGKILTIKTYMEGDEVVLSVQDQGKEI-APDILNKMGTPF 456

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A+ +   +  E         
Sbjct: 457 FTTKNNGTGLGLATCYSIANRHNAAISVETGP-AGTTF 493


>gi|219846968|ref|YP_002461401.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
 gi|219541227|gb|ACL22965.1| multi-sensor signal transduction histidine kinase [Chloroflexus
            aggregans DSM 9485]
          Length = 2783

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 66/236 (27%), Gaps = 25/236 (10%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMS 59
            ++I   + +        S + H++ +P+ AI   +++L       +  + +  + +   +
Sbjct: 2534 RDITREIEADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQLSYLNIIKNN 2593

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
                   +     ++              +      V + +++ +  + + +  + +   
Sbjct: 2594 TNRLRALIEDILEFSRPDSKKKLTFTQVDIPTVIEEVVQSLRLEYERKGMKVRIDTSPSL 2653

Query: 117  -----------KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I+ NLF  A      G      +  +  N     ++  G     PE+ 
Sbjct: 2654 PPVIADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFVNRANMMQIEVEDTGVGM-SPEQL 2712

Query: 165  TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      +            +       L   +   +            S  + 
Sbjct: 2713 KKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFSFAIP 2768


>gi|307592365|ref|YP_003899956.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986010|gb|ADN17890.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1490

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
            ++I        + A   S + H++ +P+ ++  +L LL E  I+         +Q+    
Sbjct: 1248 EDITERDKVERMKAEFISVVSHELRTPLTSMQAALSLLSEKIIDPNSPEGEATIQIATEG 1307

Query: 57   SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106
            +   +      + L    +G +     L ++  +IE  IA  + +          +  + 
Sbjct: 1308 TDRLVRLVNDILDLERLESGKIRLKKSLCNVIDLIETAIAQMQEMANQANITLKFILCSF 1367

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFP 161
            +    +    ++L NL   A    P              +  K    F ++  G      
Sbjct: 1368 QIEADADRILQVLTNLLSNAIKFSPHHSTIELSVEEQQDEGVKGVLRFGVRDQGRGIPSA 1427

Query: 162  EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +              T     +       +  ++  ++  E I          L K
Sbjct: 1428 HLDSIFARFGQVDASDSRTKGGTGLGLAICRSIVEQHGGKIWAESIAGQGSTFYFTLPK 1486


>gi|332980719|ref|YP_004462160.1| histidine kinase [Mahella australiensis 50-1 BON]
 gi|332698397|gb|AEE95338.1| histidine kinase [Mahella australiensis 50-1 BON]
          Length = 448

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 56/223 (25%), Gaps = 18/223 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFM 67
            +  L   L + I HD+ +P+  I    E++ +       E +++I   +      +  +
Sbjct: 222 KTEKLRRELIANISHDLRTPLTMITGYGEIIRDLPDENTPENIRVIIDEANRLTRLVNDL 281

Query: 68  RL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                                D      +           D                + +
Sbjct: 282 MELSQLQSGTQQLQISRFNLTDVAKQTIERCAQFTKKDGYDITFSSDGDAWVEADELKIS 341

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE 173
           +++ NL   A     +   V +S Q        S+K  G+          + +    +  
Sbjct: 342 QVIYNLLGNALTYTGKDKTVAVSQQIKDGYVRISVKDTGDGISPEHIDNIWDRYYKVDKT 401

Query: 174 STID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +   +  +   E            L+
Sbjct: 402 HRRAALGTGLGLSIVKSIIQMHDGKCGVESKPGAGSTFWFELK 444


>gi|239978524|ref|ZP_04701048.1| two-component system sensor kinase [Streptomyces albus J1074]
 gi|291450420|ref|ZP_06589810.1| two-component sensor [Streptomyces albus J1074]
 gi|291353369|gb|EFE80271.1| two-component sensor [Streptomyces albus J1074]
          Length = 371

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 54/232 (23%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 132 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWDRFTDDQKRLMLETVDAD 191

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G     +       +R  V      
Sbjct: 192 AGRVTRLIAELLDISRIDSGRLEVRRQPVDLAAAVGRHVHALVAAGQPPERFLVRLHRPL 251

Query: 109 IDLSRERA---KILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             L  +     +IL NL   A                +++       ++   G       
Sbjct: 252 PALWADPDKIDQILSNLLENAVRHGEGTVTIDVAPAPLKNDTEGTAVTVSDEGPGIPEES 311

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      S      +  Y V  +   +   +  E            L 
Sbjct: 312 VNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTISVERARGGGARFRFTLP 363


>gi|224537669|ref|ZP_03678208.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520728|gb|EEF89833.1| hypothetical protein BACCELL_02551 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 431

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 61/231 (26%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
           A+    N        L  + + H+I +P+ AI    ELL        + + ++++  ++ 
Sbjct: 185 AREKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLASASTEEEKAQFLEIVHSNNE 242

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------W 104
                +                    VD    + DIEQ+    +     V          
Sbjct: 243 LLQQLIADILDLSKIEAGTLEFTFSEVDVNQLMFDIEQLFRMRLEDKSAVIQIIRQTPPD 302

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +++ N    A      G       + ++    F +K  G+     +  
Sbjct: 303 ECVMYTDRNRLQQVVSNFMTNAVKFTDEGSITFGYNRCAEG-LYFYVKDTGSGIPEDKVN 361

Query: 165 TQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   VE       +      ++  +   ++  E            L 
Sbjct: 362 HIFERFVRVEQNKKGTGLGLAICEMIIRKLGGKIGVESEYGKGSTFWFTLP 412


>gi|196249174|ref|ZP_03147873.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|196211403|gb|EDY06163.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 434

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 17/229 (7%)

Query: 2   AKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
             NI      + +  + A+  L + I H+I +P+ A    ++L++E         +  ++
Sbjct: 186 RHNIALRKRIIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARI 245

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TG 106
                  A   +                + +    + + D I     +            
Sbjct: 246 AMEELDRAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDIIRPLANMSCVDIKTTLSPF 305

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +    +  + LLN+   A  ++P GG + + V       +  +   G      E+  +
Sbjct: 306 SVMGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDDGRVLIRIADTGVGM-TKEQLER 364

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +  +    +    V  +       +  E        +S  L 
Sbjct: 365 LGEPYFTTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHRGTTVSIYLP 413


>gi|222055858|ref|YP_002538220.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221565147|gb|ACM21119.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 648

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 68/244 (27%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
            K       +  + AL  L   I HD  + +  I+    LL    D    + +  + I  
Sbjct: 255 KKAFEQLRQAQKMEALGQLAGGIAHDFNNLLTIINGYSTLLLRSLDRESPQHQEAEQILK 314

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEK 108
           +   A    + +            ++ L D  + IE  +       +             
Sbjct: 315 AGDRAADLTRQLLTFSRRQILAPRMLNLNDQIRGIEKMLHRVVGEHIYLETSLAEDIDLI 374

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKI 153
                +  +I++NL + A  ++  GG +               T          + ++  
Sbjct: 375 KIDPGQVEQIVMNLVVNAGDAMKDGGMMSIATTNAEIDQSFASTHPGSVMGGYVMLAVTD 434

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           NG      E  +++ +    +        +    V  +  +N   +      +       
Sbjct: 435 NGTGM-TEEVKSRLFEPFFTTKEMGRGTGLGLATVYGIVKQNGGYIDVASELEKGTTFRI 493

Query: 212 LLEK 215
            L +
Sbjct: 494 YLPR 497


>gi|148657589|ref|YP_001277794.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569699|gb|ABQ91844.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 471

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSM 58
           M+ ++   + +      + + + HD+ +P+  +    E L E  I     + Q++     
Sbjct: 217 MSADLSRAIQARR---QMTADLAHDLRTPLSILRGYTEGLQEGRISGSPTIYQIMHGEVE 273

Query: 59  SAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +RL                    +        +         ++V  +    
Sbjct: 274 HLQRLIDDLRLLSLADAGALSLNRRPVDPRALLERAALAHMVQAEQQGLTIRVEASETLP 333

Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                +   A++L NL   A     RG  V  + ++     I  ++  G+     +    
Sbjct: 334 SVAVDTDRMAQVLNNLVANALRHTARGEIVLTAREEGAQRVILEVRDTGSGIAPEDLPRI 393

Query: 164 FTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +   + +       +       +   +   +            +  L 
Sbjct: 394 FDRFYRADPSRSREGGHQSAGLGLAIAKAIIEAHNGAISVASRVGEGTTFTITLP 448


>gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
 gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
          Length = 1390

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 59/236 (25%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMS 59
            +     L+ +DL      S I H+  +P+  I     E+L    ++  V + + L+  +
Sbjct: 338 QQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSELDVRVREELELAHRN 397

Query: 60  AIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107
            +                          VD      ++  V    I              
Sbjct: 398 GLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAGLEFTVDCPPL 457

Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       K++LNL   A      G        D       ++   G      E  
Sbjct: 458 AEPVYVDRDMWEKVVLNLLSNALKFTREGAVTVRVTADDGVAV-VTVADTGVGIPEAE-M 515

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +           + +   I    V  L   +   +  +  +      +  + 
Sbjct: 516 PRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGGGTTFTIQMP 571


>gi|221197447|ref|ZP_03570494.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2M]
 gi|221204120|ref|ZP_03577138.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221176286|gb|EEE08715.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gi|221184001|gb|EEE16401.1| periplasmic sensor hybrid histidine kinase [Burkholderia
           multivorans CGD2M]
          Length = 1029

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 63/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +   + + D       + L + + H+I +P+  I  +LELL+   ++      ++ 
Sbjct: 501 LVQKLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSVLDLPQRSRVQT 559

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              +A   L+ +     +T      + +  IE      IA +                  
Sbjct: 560 LRNAASGLLELVSGILDFTKVEAGAMPVESIEFDAIGVIARELGAYAPVAKAKGLPLFCE 619

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155
           +  S +          A++  NL   A      G                    +++  G
Sbjct: 620 IAASASQRMRGDPTRLAQVFGNLLSNAIKFTAHGHVTARLRAVRGECGTAELAIAIEDTG 679

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +        +              +       L      R+            +
Sbjct: 680 IGIGSADLHKLFRAFSQVDATIARRYGGTGLGLALCDRLVTAMGGRIAVTSAPGAGSCFT 739

Query: 211 ALLE 214
             L 
Sbjct: 740 VRLP 743


>gi|54307406|ref|YP_128426.1| osmolarity sensor protein [Photobacterium profundum SS9]
 gi|46911826|emb|CAG18624.1| putative sensor outer membrane protein EnvZ [Photobacterium
           profundum SS9]
          Length = 443

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 61/224 (27%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            K        M       ALL + + HD+ +P+  I  + E++        +        
Sbjct: 216 TKAFNQMAEGMKQLEDDRALLLAGVSHDLRTPLTRIRLATEMMSPEDSYLADGMTKDTEE 275

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            + + +                +D    L ++ +    +    +       G     +  
Sbjct: 276 CNEIISQFMDYLKSTKKPVMDVIDLNDLLQEVAESEGGYENEVELGLSDTPGRIEANAVA 335

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----- 169
             + + NL + A        K++      +    + ++ NG   +  +            
Sbjct: 336 MKRCVANLVVNALRYGNGWVKISSGTSADRKSAWYCVEDNGPGIQEDQVSRMFQPLTRGD 395

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               S  +   +    V  +  ++   +      D  + +   L
Sbjct: 396 SARGSDAEGTGLGLAIVKRIIDQHDGVITVTNRRDGGLKVQITL 439


>gi|327482007|gb|AEA85317.1| sensor histidine kinase [Pseudomonas stutzeri DSM 4166]
          Length = 984

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 74/239 (30%), Gaps = 25/239 (10%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIED 47
           + +        + S  L ++  L + + H+I +PI  I    + L +          I  
Sbjct: 738 LTETQQLEDRLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLRDEREGDGEIVEISA 797

Query: 48  EVMQLIRLSSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           ++++  +  S      + F                        +  +  +   V      
Sbjct: 798 QIIEQTKRVSHIVQSLMSFAHAGERQHQLYPVSLAQVTQDAIGLLSLNRNRTEVQFLNLC 857

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +  A++L+NL   A  + P GG + ++ + ++     +++  G+     E
Sbjct: 858 HPDHVAEGDPQRLAQVLINLLSNARDASPPGGVIRVTSEVAEQTVYLTVEDEGSGI-PKE 916

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
              ++ +    +    +   +    V  +  E+  ++  +   D            L +
Sbjct: 917 IQDRLFEPFFTTKDPGEGTGLGLALVYSIIEEHYGQIDIDSPADPETQRGTRFRITLPR 975


>gi|307244128|ref|ZP_07526246.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492499|gb|EFM64534.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptostreptococcus stomatis DSM 17678]
          Length = 426

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56
           ++I   +   ++     + + H++ +P+ +I   +E L       E       + +I   
Sbjct: 191 EDISERIRLENIRRDFAANVSHELKTPLTSIQGFIETLKVNDDNIESATRKRFLDIIDNE 250

Query: 57  SMSAIIRLKFMRLAF----------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           S    I +  + +                       + D+ +       V+   + +   
Sbjct: 251 SSRLRILINDILMLSSIEGDIVLSLEKVDLKKENKKILDLFEDKMVKKQVNIYFEYNGLE 310

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++++NL   A      GG V +S  + +++    ++ NG      E    
Sbjct: 311 TIQTHREYYKELMINLISNAIKYNRPGGYVKVSFFEDEDDYRICIEDNGIGIGVEEQERI 370

Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +           ID   +    V  +       +  E +          L K
Sbjct: 371 FERFYRVTKSRNKEIDGTGLGLAIVKHIILSLGGDIGLESVLGQGSKFKISLPK 424


>gi|255306760|ref|ZP_05350931.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
          Length = 664

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 15/224 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
               L    ++++  L S + H+I +P+G I N+  LL +       ++ ++ I  +   
Sbjct: 435 EAKLLRENKMISIGQLASGVAHEIRNPLGIIRNNCYLLKDNVTMEEVNDCVKSIESNVDR 494

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------KRVQVSWTGEKIDLS 112
           A   +  +      +      I + +  + I               ++            
Sbjct: 495 ASNIITNLLNFARISDDNLEHINIRNFIENIVKLQYKMLQLKNVEIKIDCEHNLVCYING 554

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                + +NL   +  ++ + GK+ I   +         K NG   +       I +   
Sbjct: 555 ESLKHVFINLISNSIDAIHQDGKIIIYCYEKNYCLFIDFKDNGEGIKEDALKD-IFNPFY 613

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +  Y       +N   +  E            + 
Sbjct: 614 TTKPIGEGTGLGLYITYNEIKKNNGDISVESKLGVGTCFHIKIP 657


>gi|327190897|gb|EGE57953.1| two-component sensor histidine kinase protein (probably regulates
           osmosensitive potassium channel) [Rhizobium etli
           CNPAF512]
          Length = 274

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 57/233 (24%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLS 56
                  +  L + L + I HD+ +P+ AI  +   L +                 +  S
Sbjct: 31  RARLAAEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYFASMPEEDRADLLSTVVDES 90

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                     + +    +G+++    L     ++   +A   ++      E    +    
Sbjct: 91  ERLNRFIANLLDMTKIESGAMEPNSALHYAGDIVGTALARAAKILEHHKTEMSIPAELPM 150

Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A    P G  + I      +  +  +   G      +     
Sbjct: 151 VRVDPVLFEQVIFNLLDNAAKYAPEGSVIQIEGWADADNVVVQVSDEGPGIPPADLARVF 210

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215
                    D       +               +           V +  L K
Sbjct: 211 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMGGTIAAGNRRGRPGAVFTIRLPK 263


>gi|310819599|ref|YP_003951957.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392671|gb|ADO70130.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 561

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 70/245 (28%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEV 49
            +N      ++ L       +   + + H+  +P+ AI     +L      + +  +   
Sbjct: 313 EQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQKRN 372

Query: 50  MQLIRLSSMSAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--- 105
           +Q I  +    +    + + +     G +   +    + +++++ +A    +        
Sbjct: 373 LQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKLVV 432

Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGN 156
                    E     ++  +I+LNL   A      G     +         + S+K  G 
Sbjct: 433 DAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVKDTGI 492

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E   +I +                 +       LA     R+  +         +
Sbjct: 493 GI-AQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTFT 551

Query: 211 ALLEK 215
             L +
Sbjct: 552 LHLPR 556


>gi|302333163|gb|ADL23356.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 583

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|298694775|gb|ADI97997.1| staphylococcal respiratory response protein B [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 583

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|298504565|gb|ADI83288.1| sensor histidine kinase, HAMP domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 469

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 68/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQL 52
           +A      L  ++            + H++ +P+  +    E+      E     E+++ 
Sbjct: 228 LATTFNDTLERLENAFNRIRQFTGDVSHELRTPLTILRGEAEVGLKWAKEPEEFRELLRS 287

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------- 103
                      ++ +       G V   +   D+  ++ + +   + +            
Sbjct: 288 NLEEINRMSKIIETLLELSRVEGGVKLELADLDLSDLLAELVQQSRLIAPDKNLRIAFVG 347

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +       ++ +NL   A    P  G++++ V  + +    ++  +G      +
Sbjct: 348 QEPVTILGDWLRLRQVFMNLLDNAVKYTPADGEISVVVDTTGDSARVAIIDSGPGIPPED 407

Query: 163 ---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +    +           +    V      +  R+          + + LL +
Sbjct: 408 LPHIFERFYRVDKARNRADGGCGLGLSLVKTFVEAHGGRIEVVSEAGKGSIFTVLLPR 465


>gi|294495585|ref|YP_003542078.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666584|gb|ADE36433.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 736

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 25/223 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR--------- 63
           +   + + H++ +P+ ++    ++L+      ++D+  + ++    S             
Sbjct: 513 SEFLANMSHELRTPLNSVIGFSQVLETNSSNHLDDKEQKYVKNIYESGSHLLELINNILD 572

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAK 117
                         +V+    + D   ++E               S   E      +  +
Sbjct: 573 ISKVESGKMDYLPETVNLTEIIDDTIVLVEPMAKKKSVDLHLNIKSEDLEIHVDRLKFKE 632

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           I+ NL   A    P  G V+++ +        S+   G      EKF  I D        
Sbjct: 633 IMYNLLSNAIKFTPEKGTVSVNSKCVNKNFQISVSDTGIGV-PKEKFESIFDPFKQVDST 691

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V      +   +  E         +  L 
Sbjct: 692 SSRSFGGTGLGLALVRKYVEMHGGEIWVESEVGVGSTFTFTLP 734


>gi|317151842|ref|YP_004119890.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942093|gb|ADU61144.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 333

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 65/232 (28%), Gaps = 25/232 (10%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------------DEVGIEDEVMQL 52
             + S  +  L  L S I H+I +P+G I    ELL                   + +  
Sbjct: 87  LLIHSQKMSVLGELSSGIAHEINTPLGIIGQETELLHMLAGRSEYAALQSRPELWDRIDQ 146

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           I             +      T +V   + LG++ + +   +  +   Q           
Sbjct: 147 ISTQVERCGEITHQLLDFARKTRAVLQTVNLGELVEDMIRLVEREAGYQNIQIKRHFHDQ 206

Query: 113 RER--------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +++LNL      ++   G VT S + S       +   G     PE  
Sbjct: 207 GRIISTDPALVRQVVLNLLQNGVQAVGHDGTVTASTRVSPERAEIQVSDTGCGI-APENL 265

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +     + + H     +            + LL 
Sbjct: 266 QRIFDPFFTTKPPGQGTGLGLSICLKIVHRLGGHIRVRSKPGQGAEFTLLLP 317


>gi|265765874|ref|ZP_06093915.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253542|gb|EEZ25007.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 565

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +L+ +    +E  + IR+ + + 
Sbjct: 323 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 382

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + L+ +               ++ +   +  L +   +          VQ+ +T ++  
Sbjct: 383 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPG 442

Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++++NL   A      G           K+E  F +K  G      +  
Sbjct: 443 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 502

Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + I    +      ++       +  E  +         L 
Sbjct: 503 KVFERFVKLNTFIKGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLP 553


>gi|224538854|ref|ZP_03679393.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519529|gb|EEF88634.1| hypothetical protein BACCELL_03750 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 329

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 18/227 (7%), Positives = 53/227 (23%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK+   NL  +    L  + + H+I +P+ +I     +L   ++       +++++ ++ 
Sbjct: 98  AKDKAENLDRLKSAFL--ANMSHEIRTPLNSIVGFASMLVEEEDKEERQGYIEIMQENTE 155

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGE 107
             +  +  +                    +   + I     ++                 
Sbjct: 156 LLLQLISDILDLSKIEAGTLDFNMGYLNIRDFCEDILRGYEIKEDKPVPVVLASGLPDYR 215

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQ 166
                +   +++ N    A     +G                FS+   G           
Sbjct: 216 IYTDKKRLMQVITNFINNALKFTSKGQITLEYHFKEGTNEIEFSVTDTGIGIAPDAVGQV 275

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +      +       +       +  E            
Sbjct: 276 FDRFVKLNTFSKGTGLGLSICRSIVEHLGGTIGAESEVGVGSRFWFT 322


>gi|196041904|ref|ZP_03109192.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196027276|gb|EDX65895.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 357

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 72/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 123 MTDELNVM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKREHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++ +G      +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352


>gi|218777967|ref|YP_002429285.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
 gi|218759351|gb|ACL01817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1147

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 62/240 (25%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQL 52
            + + +  +   ++ +  L   + HD+ + +  I    E+L +            +E++  
Sbjct: 766  LQEQLSMS-QKLESIGRLAGGVAHDLNNLLSPIIGFGEILSDDIGPDDPKREAVEEILGA 824

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               +       L F R        +D    LG  + ++   I  D  ++V  + + + + 
Sbjct: 825  GLRARNLVRQLLAFSRKQTLEFKPLDISKTLGAFKNLLRRTIPEDIEIRVISSQKVLPVM 884

Query: 113  RERAKILLNLFMVAHASLPRGGK------------------VTISVQDSKNENIFSLKIN 154
             +  +I   +  +A  +                           S           +   
Sbjct: 885  ADAGQIEQVIMNLAVNAADAMPNGGVLTLETGMADLDADYAKLHSEVQPGRYAALVISDT 944

Query: 155  GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            G       +                 +    V  +  ++   +     +         L 
Sbjct: 945  GQGMDQAARERAFEPFFSTKGKHGTGLGLATVYGIVKQHGGSIWLYSEEGQGATFKIYLP 1004


>gi|144897546|emb|CAM74410.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 565

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 73/243 (30%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQ 51
           + +     + S  + +L  L + I H+I +P+        ++   L  + E       + 
Sbjct: 320 LRETQVHLIQSEKMASLGQLVAGIAHEINNPLSFALSNVFSVEGWLASVAEADALPADLA 379

Query: 52  LIRLSSMSAII---------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
                S S +                   F RL  G   ++D    +  +   +   +  
Sbjct: 380 AKITKSRSRMTDTAQGLERVRELVVKLRTFSRLDEGEFNTIDVREAMESVLLFLRHKMTG 439

Query: 97  DKRVQVSWTGEKI--DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
              V   +           +  ++L+N+   A  ++   G +T+      +    S++ +
Sbjct: 440 RIEVVRDYASVNDLACYGGQLNQVLMNIVANAVDAIEDQGIITVRTGVEGDMFAISVQDS 499

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G+     E   +I D    +        +       +   ++ R+              L
Sbjct: 500 GSGI-PKENMERIFDPFFTTKPVGQGTGLGLAISYKIVQAHRGRIEVASELGQGTEFRVL 558

Query: 213 LEK 215
           + +
Sbjct: 559 IPR 561


>gi|39995560|ref|NP_951511.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982323|gb|AAR33784.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 469

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 68/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQL 52
           +A      L  ++            + H++ +P+  +    E+      E     E+++ 
Sbjct: 228 LATTFNDTLERLENAFNRIRQFTGDVSHELRTPLTILRGEAEVGLKWAKEPEEFRELLRS 287

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------- 103
                      ++ +       G V   +   D+  ++ + +   + +            
Sbjct: 288 NLEEINRMSKIIETLLELSRVEGGVKLELADLDLSDLLAELVQQSRLIAPDKSLRIAFVG 347

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +       ++ +NL   A    P  G++++ V  + +    ++  +G      +
Sbjct: 348 QEPVTILGDWLRLRQVFMNLLDNAVKYTPADGEISVVVDTTGDSARVAIIDSGPGIPPED 407

Query: 163 ---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +    +           +    V      +  R+          + + LL +
Sbjct: 408 LPHIFERFYRVDKARNRADGGCGLGLSLVKTFVEAHGGRIEVVSEAGKGSIFTVLLPR 465


>gi|21225799|ref|NP_631578.1| two component system histidine kinase [Streptomyces coelicolor
           A3(2)]
 gi|7799270|emb|CAB90892.1| two component system histidine kinase [Streptomyces coelicolor
           A3(2)]
          Length = 504

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 68/240 (28%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----------V 43
           MA+ +     + +L  L        + + H++ +P+ A+    E+LDE            
Sbjct: 261 MAETLER--DAAELRRLEAGARRFAADVAHELRTPLAAMAAVTEVLDEDAASGVLPADTE 318

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                + + +R  +      ++  R        +   VD    +    Q+         R
Sbjct: 319 DAVRLISEEVRTLTRMVEDLMEVSRFDAKAAPVHREDVDLRTLVTKTLQLRGWAHDERVR 378

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +          R    +L NL   A         VT++V+ S +    ++   G    
Sbjct: 379 ADLPEPAPVRVDPRRIDVVLGNLVANALHHGR--PPVTVAVRVSDDRVRVTVTDRGPGIP 436

Query: 160 F---PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               P  F +    +          +        A  +   L          V +  L +
Sbjct: 437 DDALPYVFDRFYKADAARPRSGGSGLGLAIAHENAALHGGTLAAANRPGGGAVFTLTLPR 496


>gi|298385109|ref|ZP_06994668.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298262253|gb|EFI05118.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 720

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 51/239 (21%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQ 51
            K +   L            L +   + I H+I +P+ AI     LL   E GI +E  +
Sbjct: 474 RKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGISEEKQE 533

Query: 52  LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            I +   +  +                         VD      ++E             
Sbjct: 534 YINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNKKSGIC 593

Query: 101 QVSWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                               ++++NL   A      G               F +   G 
Sbjct: 594 ICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGC 653

Query: 157 LARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +     S +    +       +      ++               L 
Sbjct: 654 GIPEERLEEIFGNFVKLNSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712


>gi|260460550|ref|ZP_05808801.1| Osmosensitive K channel His kinase sensor [Mesorhizobium
           opportunistum WSM2075]
 gi|259033655|gb|EEW34915.1| Osmosensitive K channel His kinase sensor [Mesorhizobium
           opportunistum WSM2075]
          Length = 882

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 54/233 (23%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LS 56
                  +  L + L + I HD+ +P+ AI  +   L E                    S
Sbjct: 631 RAKLAAEADRLRSALLTSISHDLKTPLAAIMGAAGTLREFAPALPEQDRAELLSTVLDES 690

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                     + +    +G+++       +  ++   +   +++      E         
Sbjct: 691 ERLNRFIANLLDMTKIESGAMEPNYAFHYVGDIVGSALQRARKIIAEHKTEIDIPMDLPM 750

Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    + L NL   A    P G  + +         I  +   G      +     
Sbjct: 751 LKVDPVLFEQALFNLLDNAAKYAPPGSTIRVQGWTDNGSVILQVMDEGPGIPPGDVERIF 810

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215
                    D       +               +      D    V +  + K
Sbjct: 811 DTFYRVRKRDQVRAGTGLGLSICRGFIEAMGGTITAANRTDRPGAVFTISMPK 863


>gi|253570643|ref|ZP_04848051.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251839592|gb|EES67675.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 720

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 51/239 (21%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQ 51
            K +   L            L +   + I H+I +P+ AI     LL   E GI +E  +
Sbjct: 474 RKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGISEEKQE 533

Query: 52  LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            I +   +  +                         VD      ++E             
Sbjct: 534 YINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPVDVHGLFIELEDTFRLRNKKSGIC 593

Query: 101 QVSWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                               ++++NL   A      G               F +   G 
Sbjct: 594 ICYHRRTTECGVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGC 653

Query: 157 LARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +     S +    +       +      ++               L 
Sbjct: 654 GIPEERLEEIFGNFVKLNSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712


>gi|217963311|ref|YP_002348989.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|217332581|gb|ACK38375.1| sensor histidine kinase [Listeria monocytogenes HCC23]
 gi|307572110|emb|CAR85289.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 459

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P+GG + I + +        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQIHLYEEGTNVFVEVQDSGVGISKSDMAKIFE 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 407 RFYKANQSRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458


>gi|168705546|ref|ZP_02737823.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 559

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 71/229 (31%), Gaps = 24/229 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------- 59
            S  L A+  L   I HD  + +  +  +LEL+          + +  S+          
Sbjct: 189 QSHKLEAVGRLAGGIAHDFNNLLTVVLGNLELIRCGAATGADAEELLASTERAAKQAAEL 248

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116
               L F R     T SVD    + D   ++   I     V+         ++ +     
Sbjct: 249 TKQMLGFARRQPLRTASVDLNQLVRDSLVLLRRTIDARIVVRFEPAPHLRPVAADPVQLQ 308

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKINGNLARFPEKFTQIV 168
           ++L+NL + A  ++P GG +T+   D+              S+   G      E   +I 
Sbjct: 309 QVLMNLCLNARDAMPEGGTLTVETADADPPDGPEGKRFVRLSVSDTGVGM-TDEVREKIF 367

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D    +        +    V  +A  +   +               L +
Sbjct: 368 DPFFTTKGVGQGTGLGLAVVYGVATAHGGSVEVASAPGAGSRFDVYLPR 416


>gi|147677932|ref|YP_001212147.1| hypothetical protein PTH_1597 [Pelotomaculum thermopropionicum SI]
 gi|146274029|dbj|BAF59778.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 621

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/252 (9%), Positives = 61/252 (24%), Gaps = 40/252 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVG------------ 44
           + ++        +L     S + H++ +P+ ++    ++    L+E              
Sbjct: 127 LRQSNEKLTELDELKTDFLSTVSHELRTPLTSVLGFAKITQKRLEEHIFPLIISTDRRIE 186

Query: 45  ----IEDEVMQLIRLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQ 88
                  + +++I          +  +                  + +            
Sbjct: 187 KTVKQVKDNLEIIVSEGERLTELINDVLDIAKLEAGKIEWKMEKLSMADVIERATAASSY 246

Query: 89  VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
           + E       +       +         ++++NL   A      G  VT   +   +E  
Sbjct: 247 LFEQKGLAFFKEIEEGLPDLTGDRDRLIQVIINLISNAVKFTNEGS-VTCRARMIGDEIT 305

Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202
            S+   G      E   +I +                 +       +   +  R+  E  
Sbjct: 306 VSVIDTGIGI-AREDHERIFEKFKQAGETLTDKPKGTGLGLAICKQIVEHHGGRIWVESE 364

Query: 203 DDHNVVLSALLE 214
                  S  L 
Sbjct: 365 PGKGSSFSFALP 376


>gi|54022512|ref|YP_116754.1| putative two-component system sensor kinase [Nocardia farcinica IFM
           10152]
 gi|54014020|dbj|BAD55390.1| putative two-component system sensor kinase [Nocardia farcinica IFM
           10152]
          Length = 511

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 58/224 (25%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
             +   H++ +P+  I    EL  +         M  I   +    + ++ + +      
Sbjct: 272 FVADASHELRTPLTTIRGFAELYRQGATTDPAMFMDRIEHEARRMGLLVEDLLMLARLDA 331

Query: 76  SVDSL-----------IGLGDIEQVIEDFIAVDKRVQVSWTGE-------KIDLSRERAK 117
                             + +   V         R ++                     +
Sbjct: 332 QRPLEIGTVDLLTVAGDAVHNARAVAAAADPAGPRRRIELDVHAGTGTLEVPGDEDRLRQ 391

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI- 176
           +L NL   A    P    VT+ +    +E I ++   G     PE   ++ +    + + 
Sbjct: 392 VLANLLNNALTHTPPDAAVTVRLTPEPDEVILAVADTGPGL-TPEAAERVFERFYRTDVS 450

Query: 177 -----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +    V  L   +   +  +         +  L +
Sbjct: 451 RARASGGSGLGLSIVQALVVAHGGSVSVDSAPGAGATFTVRLPR 494


>gi|88797263|ref|ZP_01112853.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
 gi|88780132|gb|EAR11317.1| probable sensor/response regulator hybrid [Reinekea sp. MED297]
          Length = 656

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  +      +M+  A   + + H+I +P+ AI   +ELL          + +     S+
Sbjct: 162 LKDSEARARQAMEAKATFLANMSHEIRTPMNAIIGMIELLQHEDPNQTQKRYLATLRNSS 221

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
            + ++ +      +                   L     V              RV  + 
Sbjct: 222 NVLMRIIDDILDVSKIEAGKLSLEKKPFPVRQVLHQCLSVYTQISNRKNILLTGRVDAAV 281

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE- 162
             +    S    ++L+NL   A     +    V +   + K+   FS++ +G        
Sbjct: 282 PIQIQGDSSRLQQVLMNLISNAFKFTDQGHILVRVECTEQKDRLRFSVEDSGVGIAEEAQ 341

Query: 163 --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +     +     +    V  +       +       H       + 
Sbjct: 342 ASLFERFNQVDQSASRSSGGTGLGLAIVREIVELWGGDVWIRSRSGHGATFFFDIP 397


>gi|303327857|ref|ZP_07358297.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302862218|gb|EFL85152.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 617

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 62/214 (28%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69
             + + H++ +P+ AI    E L  +    E  +   +   +     + +          
Sbjct: 385 FVANVSHELRTPLTAIQGYAETLISLDTSPECRRFGEIILKNGAYLTRMVGDLLALARLE 444

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                     T   ++L     + + + +   +   V +      +      A++  NL 
Sbjct: 445 GKTGSLELAPTDPREALAQAKGMCREVLERRNLHLNVDMPEQCRVMASLPHLAQVFRNLL 504

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD 180
             A    P GG + ++     NE +F +  +G      +    F +           S  
Sbjct: 505 ENACRYAPEGGNIRVTAHPVGNEVVFRVVDDGPGIPAADLDRIFERFYQVERHRGQASTG 564

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVV-LSALL 213
           +       +   +  R+  E         L   L
Sbjct: 565 LGLAICKHIVERHGGRIRAESPAQDGSTALVFTL 598


>gi|261414845|ref|YP_003248528.1| integral membrane sensor signal transduction histidine kinase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|261371301|gb|ACX74046.1| integral membrane sensor signal transduction histidine kinase
           [Fibrobacter succinogenes subsp. succinogenes S85]
 gi|302326660|gb|ADL25861.1| sensor histidine kinase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 682

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 68/230 (29%), Gaps = 24/230 (10%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV---------------GIEDEVMQ 51
               L+A+     S + H++ +P+ +I    E++                  G E   ++
Sbjct: 451 QEHKLLAMKANFLSSVSHELKTPLTSIKMFAEMMARGRVQKVEKVQEYSGLIGKEATRLE 510

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  + ++                   +    + D  + I     +    ++  +   + 
Sbjct: 511 NLIGAILNYTRMEHGKGGFHWEKLDFSACVQKVFDNVEDIGVEKGLMFNTKIEPSMFVVG 570

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                  ++ NL   A       G +TI+V   ++  +FS+   G      E+     D 
Sbjct: 571 DYTALYSLVQNLIENAIKYTNAPGDITITVAPDEDRVVFSVADTGIGIPSSEQKNIFNDF 630

Query: 171 N-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +  +     +    V  +A  +K  +            +   +K
Sbjct: 631 YRVGDEMTRSTKGSGLGLAIVKRVAETHKATISLTSKPGKGSTFTVRFKK 680


>gi|162448620|ref|YP_001610987.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159202|emb|CAN90507.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 623

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 68/246 (27%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDL----------VALLCSRICHDIISPIGAIHNSLELLDEVGI----- 45
           + +     + +  L             L + + HD+ SP+  I  +  LL          
Sbjct: 360 LGRRAALAIDNARLYESAQRAIRAREELVAVVSHDLKSPLATIVMNTSLLRRKLPGADEA 419

Query: 46  --EDEVMQLIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
                 ++ I+ ++      ++ +                  D    LGD  +++ +  A
Sbjct: 420 VEVRRPVERIQKAADRMNRLIRDLLDLAKLDGGHISIQPVPHDVAGLLGDAIELLREEAA 479

Query: 96  VDKRVQVS----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
                            +       +++ NL   A      GG+V +  +    E   S+
Sbjct: 480 EKSLRLEQSVELGVDRALCDRERILQVIANLVGNAIKFTSAGGEVAVRAEPWGREVRLSV 539

Query: 152 KINGNLARFPEKFTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +  G      ++  +I +   +   +      +       L   +  R+  E        
Sbjct: 540 RDTGPGI-PEDQRARIFERYWQAKETAHKGTGLGLSIAKALVEVHGGRIWVESKVGEGST 598

Query: 209 LSALLE 214
               L 
Sbjct: 599 FFFTLP 604


>gi|118478434|ref|YP_895585.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|118417659|gb|ABK86078.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
          Length = 755

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 59/225 (26%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   +       + ++     
Sbjct: 526 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTKNENNQGYINIVSSEIE 585

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +  +     +  + + ++        +S 
Sbjct: 586 RIESITTEFMAVAKPQVVKIQPNDISVLMDQVLMLLQPQAMMNNIKFRIDLNPGIPLISC 645

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 646 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSICFIDQGCGI-PKERIPYLGE 704

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   +K ++  E   +   ++   L 
Sbjct: 705 PFYSIKEEGIGLGLMICYKIIETHKGKVFIESEVNKGTIVEVTLP 749


>gi|83643804|ref|YP_432239.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Hahella chejuensis KCTC 2396]
 gi|83631847|gb|ABC27814.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Hahella chejuensis KCTC 2396]
          Length = 698

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 79/233 (33%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE------DE 48
           +       +    L A+  + + I H++  P+ A+ + + +    L++   +      D+
Sbjct: 461 LRTTQEALMQERKLAAMGRMSAAIAHELNQPLTALVSYVAMGRLYLEQEQKDKSAATLDK 520

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWT 105
           +  L++  +  +     F  +             +  +E+V+E  +   K +   Q+   
Sbjct: 521 MDALVQRIARISSQLKSFAGIRSVDLRPTALQAVMRYVEEVLEHKLNQQKSIIRMQIPDG 580

Query: 106 GEKIDLSRERAKILLNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            + I       ++++NL   A A+        ++++ +   +  + S++ NG      E+
Sbjct: 581 LQAIADQHMLEQVMINLLDNAIAAVKSAVKPDISVAAERCGDRVMISVRDNGEGM-DEER 639

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + D    +    +   +       L  +    +            +  L 
Sbjct: 640 LRHLFDPFFTTKTGSEGLGLGLAISYNLLQDMHGEITVTSTPGEGSEFTLSLP 692


>gi|20091380|ref|NP_617455.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916516|gb|AAM05935.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 726

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/245 (8%), Positives = 59/245 (24%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            KN    L      A +         + + H++ +P+ +I    +LL E    +  ++  
Sbjct: 477 RKNYEIELFRAKQDAEVANRAKSAFLANMSHELRTPLNSIIGFSDLLYEKVYGELNLKQT 536

Query: 54  RLSSMSAIIRLKFMRL-----------------AFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           +     +      + L                  +      +    + D+         +
Sbjct: 537 KAVGNISNSGKHLLNLINEILDLSKVEAGSFELHYSTFWLAEVFAEVRDMIFPFATSKGL 596

Query: 97  DKRVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
              +++               ++L NL   A       G V +           ++  +G
Sbjct: 597 KIELEIDSNLSRVYADKERILQVLSNLVTNAVKFSNENGCVKVKAVQMDGFLKITVADDG 656

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +   ++                   +    V  +   +   +  E       V 
Sbjct: 657 IGIAAAD-HEKLFKPFSQIDSSFSKRYQGTGLGLALVKEIVQLHGGTVWFESEVGKGSVF 715

Query: 210 SALLE 214
              + 
Sbjct: 716 GFSIP 720


>gi|297530123|ref|YP_003671398.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297253375|gb|ADI26821.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 457

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53
           + +  +L+ +    +   + I H++ +P+  +    ++     + +E          +  
Sbjct: 223 QTLANDLAYLKQERSEFLASISHELRTPLTYVKGYADIARRPHLSEEQRANYMAIIYEEA 282

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTG 106
                      +  +L             L      + + +    +        Q   + 
Sbjct: 283 EKIEKMVKDLFELAKLEQHSFQIEKQPTNLCSFLTKLCEKLRPAFQEKSLSLVCQCPGSV 342

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                 +   ++++N+   A      G  V ++V   K   + ++   G      +    
Sbjct: 343 MAAIDRQRFEQVMINVLDNARKYAFSGTTVAVAVHLQKQGIVIAVSDEGTGIPPEDVPRI 402

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +   +       +       +   +   +           +   L 
Sbjct: 403 FERFYRVDKSRSRTSGGTGLGLAIAKEIVEAHGGTIAARSEQGKGTTIIMTLP 455


>gi|293373302|ref|ZP_06619660.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
 gi|292631698|gb|EFF50318.1| PAS domain S-box [Bacteroides ovatus SD CMC 3f]
          Length = 502

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    E++ +   E+E  + +++ S + 
Sbjct: 265 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEERKEFVKIISSNN 324

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
           I+ L+ +               +T +   +  L +              +Q+     +  
Sbjct: 325 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQ 384

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A    P+G        +   +   F +K  G      +K 
Sbjct: 385 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 443

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +  V   S I    +      ++       +  E  +         + +
Sbjct: 444 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 496


>gi|266621452|ref|ZP_06114387.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479]
 gi|288866893|gb|EFC99191.1| sensor histidine kinase KdpD [Clostridium hathewayi DSM 13479]
          Length = 496

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +     +    L + L   I HD+ +P+  I  S                  +L+++  
Sbjct: 256 KEETKIQIEKERLKSTLLRSISHDLRTPLTGIAGSSNFLYDNYGSLDEETAKSMLNDICT 315

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + E +  +  + ++     +           VD LI                K V     
Sbjct: 316 DAEWLNSMVENLLNMTRIQEGRLDIQKKKEVVDDLISGAVTLVSKRLGDHRLKTVTPHDI 375

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +R   ++L+NL   A         +T+S +   N   F +  NG+     E+  
Sbjct: 376 VLLPVDARLFTQVLVNLIDNAIRHSGNDTTITVSARVMGNFITFKVSDNGSGI-PEERLD 434

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +  +         +       +   +   +     +         + 
Sbjct: 435 KIFDNFFTTAYENGDKQRGVGLGLTICKAIVEAHGGHIKAVNNEGGGTTFQVDMP 489


>gi|322421743|ref|YP_004200966.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320128130|gb|ADW15690.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 345

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 25/233 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRL 55
            +        + VA++     HD+ SP+  I   ++ L        +  +   V ++ + 
Sbjct: 107 SDKKEKRQREEFVAMMT----HDLKSPLTVIMGYMQALMGEMPSKVDPSLHLFVKEMDKS 162

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSW 104
           +     +    +       G +       D   +++      ++                
Sbjct: 163 AVKMLSMIDDVLDAYRLEAGLLQIDRQPCDARSLLDGCCRDGEQEAAVHGSYFLSDICDG 222

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   ++  ++  NL   A    PR G ++++     N  +  +   G      E  
Sbjct: 223 IPTLDLDWKQITRVFANLIGNAVKFTPRRGTISVTSAIEDNCLLVQVTDTGIGIPEDELP 282

Query: 165 TQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +       +   +   +  E         S LL 
Sbjct: 283 RIFNKYFRASGAHGFKGTGLGLTISKAIVEAHGGSIRVESAAGKGSRFSVLLP 335


>gi|224585713|ref|YP_002639512.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224470241|gb|ACN48071.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 465

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMTKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|218248058|ref|YP_002373429.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218168536|gb|ACK67273.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 763

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 67/242 (27%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHN----------------------SLE 38
           +   +    S+    +   S + H++ +P+  I                         L+
Sbjct: 372 LRDTLIAAQSANHSKSEFLSNMSHELRTPLTCIIGLSGTLLHWSAQSKSLPLQKQQQYLQ 431

Query: 39  LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
            + + G     M    L           + +           I     ++ ++  I +  
Sbjct: 432 TIQDSGKHLLEMINEILEYSKLEAGKYVLSIQQFSLQKAAQNIHKKLRQEAVKRKINLQL 491

Query: 99  RVQVSWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            +Q+               +IL +L   A    P GG V + +    NE IF ++  G  
Sbjct: 492 ELQIEPQENFFFADPERLQQILYHLLNNALKFTPEGGTVILRIWREGNEAIFQVEDTGIG 551

Query: 158 ARFPEKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +        Q ++ +   T     +       L   +   +  E I     + +  
Sbjct: 552 IAQEQIPLLFESFQQLETSRRRTYGGTGLGLALTKQLVELHGGTIEVESILQEGSIFTVR 611

Query: 213 LE 214
           L 
Sbjct: 612 LP 613


>gi|158334818|ref|YP_001515990.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF [Acaryochloris marina MBIC11017]
 gi|158305059|gb|ABW26676.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF [Acaryochloris marina MBIC11017]
          Length = 1633

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 72/238 (30%), Gaps = 25/238 (10%)

Query: 1    MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50
            + ++      +     +L +   S   H+  +P+ AI  + EL+       +   +   +
Sbjct: 1386 LQQSQARE-QAEREINELKSRFISMTSHEFRTPLTAILGTTELIKHYGQGWDTNKQHTYL 1444

Query: 51   QLIRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
              I+ +                  +         ++  +    + +  +     D++++ 
Sbjct: 1445 DRIQKNVKHMTGLLDDVLVLSKADVNKVEFNPKLINLEVFCSSLVEEFQLNTKRDQQIEF 1504

Query: 103  SWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +   + ++  +     +IL NL   A    P    V   V  ++ E  F +K  G    
Sbjct: 1505 EFFWNQHEVYSDEKILRQILSNLLSNAIKYSPESTSVRFQVNVNEEEATFFIKDQGIGIP 1564

Query: 160  FPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++       +  + +       +    V      ++  +  E I D        L 
Sbjct: 1565 EADQQHLFESFHRATNVGQIQGTGLGLAIVKKSVELHRGTIDFESIADQGTTFIVKLP 1622


>gi|292490282|ref|YP_003525721.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291578877|gb|ADE13334.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 492

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 63/228 (27%), Gaps = 23/228 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM--------QLIRLS 56
           L  +     + S + H++  P+ A+   +E    +L    +  E +           + +
Sbjct: 264 LERLSTAGEMASELAHELKQPLTAVSTYIEACLRMLQRGIVSPEHLVETLENAINQNQRA 323

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLS 112
                    F+R    +   +D    + +   + E  I   +                  
Sbjct: 324 DEIIRRLRDFIRSRETHLSLIDLNKLVRETLSLAEIEIRNSQARLRLELADSLPPLSIDP 383

Query: 113 RERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  ++LLNL   +  ++           +  S+    N+   ++   G      E   Q
Sbjct: 384 IQIQQVLLNLVRNSLEAMQDTEIGKRELTIQTSLTMENNQIEIAVSDKGAGI-SSEALKQ 442

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    + +    +       +   +   +      D        L 
Sbjct: 443 LFEPFFTTKVSGMGVGLSICRSIIEAHGGHIWATSNADQGATFHFTLP 490


>gi|163849032|ref|YP_001637076.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526995|ref|YP_002571466.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163670321|gb|ABY36687.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450874|gb|ACM55140.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 872

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 62/244 (25%), Gaps = 33/244 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           ++       ++ + LL   I HD  + +  I     L       +  +Q          +
Sbjct: 481 ESQMLQTQKLESLGLLAGGIAHDFNNLLTGIMGHTSLALIDLPPNHELQPHLAAIDQAAQ 540

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            ++      L +          VD    + ++  ++        +V + +  +       
Sbjct: 541 RAAELCHQLLVYAGRGQRSLEVVDLSNLVREMGNILRLPTNRSHQVAIHYDLDTNLPPIL 600

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVT-------------------ISVQDSKNENIFS 150
               +  +++LNL   A  ++                          +      +    +
Sbjct: 601 VEASQIRQVVLNLLTNAIEAIGERSGSVTLRTGVASLSAADLRRLRLMPTIPPGDYVTLT 660

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +   G          +I D    +    H +    V  +   +   +  E         +
Sbjct: 661 VSDTGIGMDEATLR-RIFDPFFSTKPKGHGLGLAAVQGIVRRHNGAIRVESTPGLGSTFT 719

Query: 211 ALLE 214
             L 
Sbjct: 720 VYLP 723


>gi|299149224|ref|ZP_07042284.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512658|gb|EFI36547.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 541

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    E++ +   E+E  + +++ S + 
Sbjct: 304 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEERKEFVKIISSNN 363

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
           I+ L+ +               +T +   +  L +              +Q+     +  
Sbjct: 364 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDIQILFTEKADQ 423

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A    P+G        +   +   F +K  G      +K 
Sbjct: 424 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 482

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +  V   S I    +      ++       +  E  +         + +
Sbjct: 483 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 535


>gi|258593526|emb|CBE69867.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 512

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 65/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + +     + S  L ++  + + + H + +P+ ++  + ++    + +  +  E ++++ 
Sbjct: 271 LEETQAQLIQSEKLASIGEMSAAVAHGLRNPLASLRAAAQVTLHHVGDERVAQEHLKMVI 330

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
                   R+  +               L  +               D R+++       
Sbjct: 331 AEVDRLDRRISHLLAFSRPGPFRPLPEQLSRLIDDLLPAFAAPLKDRDIRLEIDLQNNLP 390

Query: 110 DLSRERAKILL---NLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           D+  +  ++      +F  A  ++P                     +  +   GN     
Sbjct: 391 DVYVDPIQVEQALGEIFSNALDAMPEGGSVTIRGYRRPDNGQPGCVVLQIADTGNGI-AT 449

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + D    +  +   +          +N   L           +S  L 
Sbjct: 450 QVLPSVCDPFFTTRAEGTGLGLAIAKRYVVQNGGSLDIASTPGVGTTVSITLP 502


>gi|227506356|ref|ZP_03936405.1| sensor kinase [Corynebacterium striatum ATCC 6940]
 gi|227197007|gb|EEI77055.1| sensor kinase [Corynebacterium striatum ATCC 6940]
          Length = 452

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 59/234 (25%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSS 57
           + +++       + +        H++ +P+ ++    EL      +D  M   ++   S 
Sbjct: 215 LQRSVVQAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATQDVDMVFSKIDDESK 274

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------I 109
             +++    + L       +D          +     A                      
Sbjct: 275 RMSLLVEDLLALTRAEGSRLDMGTVDMLELVLSAGSSARAAFPGRQIDVVNEAADIPLVK 334

Query: 110 DLSRERAKILLNLFMVAHAS----LPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                  ++LLNL   A             +     +   + +  +  +G      +   
Sbjct: 335 GDPDRLHQVLLNLVSNALRHGGEEAKVKLTIREEAGEKGTDVLIDVADDGKGMAPEDASH 394

Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +           +    V  L  ++  R+  E         +  L 
Sbjct: 395 IFERFYRADTSRTRDTGGSGLGLAIVKSLVEQHGGRISVESALGEGSTFTLRLP 448


>gi|21229201|ref|NP_635123.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907770|gb|AAM32795.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 707

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 58/245 (23%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            K     L      A +         + + H++ +P+ +I    +LL +     +    +
Sbjct: 461 RKKYEIELFRAKQDAEVANYAKSEFLANMSHELRTPLNSIIGFSDLLHDKVYGELNARQL 520

Query: 51  QLIRLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           + +   S S    L                  L +      D    + D+         +
Sbjct: 521 KAVGNISGSGKHLLNLINEILDLSKVEAGGFELHYSTFWLADVFAEVRDMLFPFAASKGI 580

Query: 97  DKRVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
              +++               ++L NL   A         V +    + N    S+   G
Sbjct: 581 KLELEIEKDLPGIYGDRERITQVLSNLMTNAVKFSNENSCVRVKASQNNNFIEVSVSDEG 640

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 E   ++                   +    V  +   +   +  +         
Sbjct: 641 IGI-AAEDHDKLFKPFSQIDSSSSRKYQGTGLGLALVKEIVQLHGGAVWFKSEVGKGSTF 699

Query: 210 SALLE 214
              + 
Sbjct: 700 GFSIP 704


>gi|310815828|ref|YP_003963792.1| Probable two-component sensor histidine kinase [Ketogulonicigenium
           vulgare Y25]
 gi|308754563|gb|ADO42492.1| Probable two-component sensor histidine kinase [Ketogulonicigenium
           vulgare Y25]
          Length = 344

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 62/226 (27%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ AI   +E L      + G+    + ++   +   +  +  +     
Sbjct: 117 FVANVSHELRTPLTAIMGFIETLRGPARDDPGVRGRFLDIMEREANRMVQLVDGLLSLSR 176

Query: 73  YTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRER---AKILL 120
                          +         +       +  V +        +  +     ++L 
Sbjct: 177 VEVDERVRPTTPVDLKALAEETIAALEPLAAQGNNTVTLHAEPGNWIVPGDIGQLHQVLR 236

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNEN-------IFSLKINGNLARFPEKF---TQIVD- 169
           NL   A         V I++  ++ +           ++  G             +    
Sbjct: 237 NLVQNALKYGGPDKNVVIALHPAQFDVALRATAVRIDVQDEGPGIEAHHIPRLTERFYRV 296

Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   T+    +    V  + + ++ RL      +     S LL 
Sbjct: 297 DAHRARTVGGSGLGLAIVKHIVNRHRGRLAISSTPEKGSTFSVLLP 342


>gi|269796832|ref|YP_003316287.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269099017|gb|ACZ23453.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 572

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 64/222 (28%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLSSMSAIIRLKFMR 68
             S + H++ +P+ +I   LEL++E                ++++  ++   +  +  + 
Sbjct: 341 FVSTVSHELRTPLTSIIGYLELIEEGYEDSEFELTDEVHGQLEVVARNASRLLALVSDLL 400

Query: 69  LAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
               +               +      D          V  RV V  T  ++      A+
Sbjct: 401 TTAQHASGTLSLRMSAGRLDEITQQSLDGVIERALGRGVQLRVDVRPTPVQMLDQARIAQ 460

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-- 175
           +L NLF  A    P GG V + V    +     ++  G      +  +         +  
Sbjct: 461 VLDNLFSNALKYTPSGGTVEVDVTAHSDHTSLRVRDTGIGMSESDVRSLFAKFFRAESAR 520

Query: 176 ---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I    +       +   +   ++ +            L 
Sbjct: 521 RAAIPGVGLGLVICKAIVEGHGGSIVVDSTLGSGSTFEVRLP 562


>gi|225155968|ref|ZP_03724452.1| PAS/PAC sensor signal transduction histidine kinase [Opitutaceae
           bacterium TAV2]
 gi|224803321|gb|EEG21560.1| PAS/PAC sensor signal transduction histidine kinase [Opitutaceae
           bacterium TAV2]
          Length = 429

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 73/235 (31%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-----------EVGIEDE 48
            +     + S    +  LL + + H++ +P+ ++   L+L++           E     +
Sbjct: 180 KQTTEERIESERTSSILLLAASVAHELGNPLNSLTIHLQLIERKLKKLKASSRESASLGD 239

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRV 100
            +++ +         +     A        +   L +I   +  F   +           
Sbjct: 240 SIRICQEEVTRLDGIVTHFLEAIRPRPPDLTETDLMEILGDVLHFQQRELEDRGIEIDAT 299

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                   +    +  ++  N+   A  ++  GG++ I                G+  + 
Sbjct: 300 TAPDLPRVMADREQLKQVFFNIIKNAVQAMQPGGRLRIKSHTDDEHVYLLFGDTGSGIKQ 359

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   ++      S  D + +    V  +  E+  ++  E  +D   V++    +
Sbjct: 360 RDLV-KLFQPFQTSKSDGNGLGLMIVQRIMREHGGQVSIESREDVGTVVTLQFPR 413


>gi|57866958|ref|YP_188631.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A]
 gi|57637616|gb|AAW54404.1| sensor histidine kinase SrrB [Staphylococcus epidermidis RP62A]
          Length = 589

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 55/218 (25%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          + + ++   S      +  +       
Sbjct: 367 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVARMD 426

Query: 74  -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNL 122
                           L  +E                   +             ++L NL
Sbjct: 427 AEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQLWNYDMDRMDQVLTNL 486

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177
              A      G  + IS+ +  + NI ++   G           F +    +        
Sbjct: 487 IDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKRGKQ 546

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   ++  E+  R+  E            L K
Sbjct: 547 GTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPK 584


>gi|27468093|ref|NP_764730.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           epidermidis ATCC 12228]
 gi|251810908|ref|ZP_04825381.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876083|ref|ZP_06284950.1| sensor protein SrrB [Staphylococcus epidermidis SK135]
 gi|293366548|ref|ZP_06613225.1| sensor histidine kinase SrrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|27315639|gb|AAO04774.1|AE016748_8 staphylococcal respiratory response protein SrrB [Staphylococcus
           epidermidis ATCC 12228]
 gi|251805588|gb|EES58245.1| histidine kinase [Staphylococcus epidermidis BCM-HMP0060]
 gi|281295108|gb|EFA87635.1| sensor protein SrrB [Staphylococcus epidermidis SK135]
 gi|291319317|gb|EFE59686.1| sensor histidine kinase SrrB [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329725412|gb|EGG61895.1| sensor protein SrrB [Staphylococcus epidermidis VCU144]
 gi|329735207|gb|EGG71499.1| sensor protein SrrB [Staphylococcus epidermidis VCU045]
 gi|329737238|gb|EGG73492.1| sensor protein SrrB [Staphylococcus epidermidis VCU028]
          Length = 588

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 55/218 (25%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          + + ++   S      +  +       
Sbjct: 366 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVARMD 425

Query: 74  -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNL 122
                           L  +E                   +             ++L NL
Sbjct: 426 AEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNDEQLWNYDMDRMDQVLTNL 485

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177
              A      G  + IS+ +  + NI ++   G           F +    +        
Sbjct: 486 IDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKRGKQ 545

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   ++  E+  R+  E            L K
Sbjct: 546 GTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPK 583


>gi|332704005|ref|ZP_08424093.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332554154|gb|EGJ51198.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 405

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 28/232 (12%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----------------DEVM 50
            +  +  +  L + + H++ +P+ A+    E +     +                 D ++
Sbjct: 164 QAEKMATIGVLAAGVAHEVNNPLAAVVGFAEGIKRRLPQLERTIDGELYGDLKEYTDTIL 223

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105
           +            L F R A      V     + D  ++++  ++    +Q+        
Sbjct: 224 KECLRCRDIVKTLLTFSRHAPASLSLVALNSVVSDTLRLLQHELSKRSGIQIKMELEESL 283

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKF 164
                   +  +++LNL   A  ++   G +T+    +        ++  G     PE  
Sbjct: 284 PVIKGNEAQLKQVVLNLLTNALDAIKDSGCITVRTFLERGARLCLEIRDTGCGI-PPEHL 342

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +    +        I       + H++   +            + +L 
Sbjct: 343 DKLFEPFFTTKPVGKGIGIGLSTCYNIVHDHGGSIQVSSNSGQGSSFTVVLP 394


>gi|309790646|ref|ZP_07685199.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227312|gb|EFO80987.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 717

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 60/242 (24%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
            ++     +  L     S + H++ +P+ +I    ELL           + +  +   + 
Sbjct: 470 SDVTREREADRLKNEFVSIVSHELRTPLTSILGYTELLRTREFAPEERQQFITTVFNEAE 529

Query: 59  SAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                ++ +                    + I      Q+    I     + ++     I
Sbjct: 530 RLSQLVEDLLGMSRIEAGKVKLNRWVISLTNIVYELTTQLNTSLIKHRLLIDITGEIPPI 589

Query: 110 DLSRER-AKILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNL 157
              R++  +I+ NL   A    P              +            + S++  G  
Sbjct: 590 YADRDKVKQIIFNLLTNAIKYSPNGGEIQLTIREAQKRDLPGDHPLGQWIVVSVRDEGIG 649

Query: 158 ARFPE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    + +    +      I    +       L   +  R+               
Sbjct: 650 MAPEDLPRIWERFYRVDNTNTRKIGGTGLGLSISRALVELHGGRIWVTSTLGRGSRFFFT 709

Query: 213 LE 214
           L 
Sbjct: 710 LP 711


>gi|229055161|ref|ZP_04195588.1| hypothetical protein bcere0026_2940 [Bacillus cereus AH603]
 gi|228721153|gb|EEL72683.1| hypothetical protein bcere0026_2940 [Bacillus cereus AH603]
          Length = 672

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 13/218 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     LS++DL+  + + I H+I +P+  +   L+LL E  I ++  +   L       
Sbjct: 446 EQELKRLSNIDLIGQMAAGISHEIRNPMTTVRGFLQLLKEESIYEKHNKYFNLMIEELDR 505

Query: 63  ----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                          +           +     + ++         +V  +   E +   
Sbjct: 506 SNSIITEFLSMGNTKKSDLQMLDLNSIIRDSIPLIKIDTYNQNKYIQVDTNDIPELLLNR 565

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171
            E  ++L+NL+     ++  G  +TIS      N  + +++  G     PE   ++    
Sbjct: 566 NEIRQLLINLYRNGLEAMSTGKVLTISTYKEGRNCVVLAVRDQGKGI-RPEVLEKLGTPF 624

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +  +   +       +A  +  ++  +         
Sbjct: 625 YTTKDNGTGLGLGVCYAIAARHNAKIEIQ-TGSEGTTF 661


>gi|197117192|ref|YP_002137619.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
 gi|197086552|gb|ACH37823.1| sensor histidine kinase response regulator [Geobacter bemidjiensis
           Bem]
          Length = 882

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            + +   + + +      +   S + H+I +P+  +    +LL+   +  E  + +    
Sbjct: 487 EEALRQAMDAAERANRAKSEFLSNMSHEIRTPMNGVIGMTQLLELTELNAEQREYVSSLK 546

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 L  +              T   +    L  I  V+       +   +    E  
Sbjct: 547 SCGKNLLTLINDILDISKIEAGMMTLESEQFSLLQSIRDVVMTQNPAAREKALRLQVEVA 606

Query: 110 DLSRE--------RAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNL 157
               +          +ILLNL   A     +GG            +      +++  G  
Sbjct: 607 PDVPDAVLGDQLRFKQILLNLLGNAVKFTEKGGVTITVTLLEQPVAPPLFQMAVRDTGVG 666

Query: 158 ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                            G+         +       LA      +  E         +  
Sbjct: 667 IAAEALEEIFKPFVQVDGSTTRKYGGTGLGLSISRRLAEMMGGSISIESTPGVGSCFTLT 726

Query: 213 LE 214
           L 
Sbjct: 727 LP 728


>gi|91794804|ref|YP_564455.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91716806|gb|ABE56732.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella denitrificans OS217]
          Length = 345

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 22/230 (9%)

Query: 5   ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
              NL +    A  L   + H+I +P+G +  + +LL     E E+ +   +    A   
Sbjct: 116 QQLNLDAQQQAAQFLVRNLAHEIKNPLGGLRGAAQLLSRELKEPELKEFTSMIIEQADRL 175

Query: 64  LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +               +    +  + Q++E     +  +   +     D+S +  ++
Sbjct: 176 SNLVNRLLGPQRPSQHSLHNIHQVVQKVLQLLEMTQPANVTIVRDYDPSIPDMSMDPEQL 235

Query: 119 LLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +   +                   +VT+  +  K     S+  NG      E  
Sbjct: 236 QQAVINLVQNAIQSLEQCGGEILIKTRTQHQVTMGNRRHKLALALSVIDNGPGV-PSEII 294

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V        +       +A  +  R+       H    +  L 
Sbjct: 295 DTLFYPMVTGREQGSGLGLSIAHNIARLHGGRIDCTSSPGH-TEFTLTLP 343


>gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 668

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 56/255 (21%), Gaps = 42/255 (16%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            + +   L +    A   S         I H++ +P+  I    +L+ +   +DE  + +
Sbjct: 264 QRRLEAELRASKQAAEAASVAKTQFLANISHELRTPLNGIMGLTQLMLDGVADDETQEYL 323

Query: 54  RLSSMSAIIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
            +   SA I +                  + +      +    +      Q +    +  
Sbjct: 324 GIIRQSASILMHIVGDLLDLSNVEAGRLMLVMREFDPQAELLPLLRNFSTQSMLRPFSFG 383

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN------------ 145
                      I       +I +NL   A     +G                        
Sbjct: 384 YHFDPLLPARLIGDPNRIKQICINLIDNAFKYTKKGTVSVRIGLWENPGNEPPPDVAPER 443

Query: 146 -ENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLP 199
                ++   G       +        +             +       LA      +  
Sbjct: 444 IRLHIAVSDTGVGIEPSRQSAIFEPFGIGEDYLTKKYSGAGLGLTVARRLAGMMGGDITV 503

Query: 200 EIIDDHNVVLSALLE 214
           E            LE
Sbjct: 504 ESEPGQGSTFYLTLE 518


>gi|322421319|ref|YP_004200542.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127706|gb|ADW15266.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1004

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 67/242 (27%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +    ++  ++ + +L   I HD  + + AI  + EL    L E       +Q I  SS 
Sbjct: 617 EAQMLHVQKLESLGVLAGGIAHDFNNILMAIMGNAELALMRLPEESEARTNLQNIEKSSK 676

Query: 59  SAIIRLKFMRLAF----GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    + M              D    + ++  ++E  I+    ++ +   +   +  +
Sbjct: 677 RAADLAQQMLAYSGKGSFVIEEFDVNALIMEMGHMLEVSISKKVVMRFNLAADLPLVEVD 736

Query: 115 RAKILLNLFMVAHASLPRGGK----------------------VTISVQDSKNENIFSLK 152
             +I   +  +   +    G                                +   F + 
Sbjct: 737 ATQIRQVVMNLVINASEAVGDQKGVITITTGTKHCDAAYLSGLWINDQLQEGDYVYFQVT 796

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +G          +I D    +      +    V+ +   +K  +            +  
Sbjct: 797 DDGCGM-DEATRARIFDPFFTTKFTGRGLGMAAVLGIVRGHKGTIEVRSEPGAGSTFTVY 855

Query: 213 LE 214
           L 
Sbjct: 856 LP 857


>gi|237709891|ref|ZP_04540372.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
 gi|237725439|ref|ZP_04555920.1| two-component system histidine kinase [Bacteroides sp. D4]
 gi|229436126|gb|EEO46203.1| two-component system histidine kinase [Bacteroides dorei 5_1_36/D4]
 gi|229455984|gb|EEO61705.1| two-component system histidine kinase [Bacteroides sp. 9_1_42FAA]
          Length = 494

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 54/221 (24%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLK 65
            S  L +   + + H+I +P+ AI     LL     +     E + +I  +    ++ + 
Sbjct: 268 QSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSEEMDGEESKEFVSIINQNCEQLLVLIS 327

Query: 66  FMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +                       L  +   + +        +        E +  +  
Sbjct: 328 DIIDMSKIESNSIEFKIQKQSLHQILSEIYQCQSLNIPSKIEFRLELPEEDTEIMIDTTR 387

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             +++ NL   A      G     S           +K  G      +            
Sbjct: 388 FKQVINNLINNAIKFTMYGHITLGSKILQNGTIDIYVKDTGMGMPQEKLAHIFERFYKMD 447

Query: 175 TI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +    +  +    I+      +  + 
Sbjct: 448 SFKPGAGLGLSICKTIIEHMQGEINVTSIEGKGSNFTITIP 488


>gi|256828233|ref|YP_003156961.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577409|gb|ACU88545.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1260

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     +     +   +R+ H+I +P+ AI    E+L E  + ++  + ++  S +  
Sbjct: 381 AKDQADKATRSK--SEFLARMSHEIRTPMNAILGMAEMLQETSLNEDQQEYVKTFSSAGE 438

Query: 62  IRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
           + L  +     ++              +    + D+ ++            +K+V     
Sbjct: 439 LLLGIINDILDFSKIEVGQIKLESIPFNLRELVDDVNKLFVYRAEEKALRLEKKVSEGLA 498

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
              I       +I++NL   A                 + D     +F++K  G      
Sbjct: 499 QRYIGDPTRIRQIIINLVGNALKFTSVGGVTMSVTESVMDDGAPCCLFAVKDTGIGIPKS 558

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  T                    +       L      ++  E            L 
Sbjct: 559 KLGTVFESFAQADSSTTREFGGTGLGLAISKKLVELMGGQIWVESEPGQGTTFFFKLP 616


>gi|218437050|ref|YP_002375379.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218169778|gb|ACK68511.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 387

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 59/236 (25%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            +     L + +L  L     S + HD  +P+  I  S  LL++        Q +    M
Sbjct: 147 QERTAELLKAKELNQLKTEFVSMLSHDFRNPLNTILLSAGLLEDSSDRLTKEQQLTYFQM 206

Query: 59  SAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                           ++       I       +    ++  + 
Sbjct: 207 IRTAIKDMDQLLTEVLIIGRADSGRLKLNPIPLNLKEFCQYIIDSFRINLIPSHQLIFNS 266

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            G       +   +   L      A    P GGK+ + + +     I S++  G      
Sbjct: 267 QGNFEQGLWDENLLRHILNNLLGNAIKYSPEGGKIRVDLIEKGERVILSVEDQGIGIPLE 326

Query: 162 EKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++          + ++      +    V      +  ++  +            L 
Sbjct: 327 DQQKLFKPFFRANNVENIAGTGLGLAIVQRCVETHGGQIEVKSQVGEGTTFIVTLP 382


>gi|149376977|ref|ZP_01894731.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358754|gb|EDM47224.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 935

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/262 (9%), Positives = 59/262 (22%), Gaps = 51/262 (19%)

Query: 5   ICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVM 50
               L +  L           +   + + H+I +P+ A+    +LL     +    + + 
Sbjct: 564 RAAKLEAERLAREAEAASLTKSEFLANMSHEIRTPMNAVIGYSDLLSNTVKDPQQRNYLD 623

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRV 100
            +   S    ++    + L+    G +               +  I  +      +   V
Sbjct: 624 AIRAGSRSLLMLINDILDLSRIEAGKMRLEYSAVSVRRLLSDVRHIFDLRATEQGISLEV 683

Query: 101 QVSWTGE--KIDLSRERAKILLNLFMVAHASLPR--------------------GGKVTI 138
            V        +       ++L NL   A                              + 
Sbjct: 684 SVDSKMPAAMMLDETRLRQVLFNLVGNAIKFTHEGGVTVRATATPRKSSEKQPVEETASE 743

Query: 139 SVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHEN 193
             +      + ++   G      ++          +G          +       L    
Sbjct: 744 VDRRCFYRLVVTVSDTGIGIPPDQQEQIFDAFEQQEGQNTRRYGGTGLGLAISRKLVRMM 803

Query: 194 KIRLLPEIIDDHNVVLSALLEK 215
              L  E         +  L +
Sbjct: 804 GGELQVESEPGAGSTFTVKLPR 825


>gi|91201266|emb|CAJ74326.1| hypothetical histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 470

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQL 52
           +   I   L  ++          S + H++ +P+ A+   +E++           E+++ 
Sbjct: 229 LTDTINLMLDRLEDAFRKIIQFTSDVSHELRTPLAALKAGIEVMLAKQRTPEEYCELLEN 288

Query: 53  IRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             +     I  +  +         +  F        L  L    QVI +   +D  +   
Sbjct: 289 NLIEHEKIINMINDLLVLLKTDAAKQEFYDVDLKKMLCELYTAFQVITETKKIDCTISKM 348

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +   ++  NL   A      GG + IS++D +NE I S++ +G      + 
Sbjct: 349 ENITIDGDQKLLYRLFSNLLDNAIKYTSPGGNICISLKDLENEVIVSIRDSGIGISENDH 408

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                                 +       +A  +K ++  +            L K
Sbjct: 409 NKIFDRFFRVDASRSRDTGGVGLGLSICKNIADLHKGKIEVKSTIGKGSAFLVTLPK 465


>gi|28868185|ref|NP_790804.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213970143|ref|ZP_03398274.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|301384665|ref|ZP_07233083.1| sensor histidine kinase [Pseudomonas syringae pv. tomato Max13]
 gi|302059530|ref|ZP_07251071.1| sensor histidine kinase [Pseudomonas syringae pv. tomato K40]
 gi|302134198|ref|ZP_07260188.1| sensor histidine kinase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|28851422|gb|AAO54499.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|213925024|gb|EEB58588.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1]
          Length = 982

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V      +     +
Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEASEHTVDLIVEDEGSGI-SKAIMDRLFE 921

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973


>gi|327540634|gb|EGF27208.1| PAS/PAC sensor hybrid histidine kinase [Rhodopirellula baltica
           WH47]
          Length = 410

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 66/233 (28%), Gaps = 26/233 (11%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAI 61
            L    L AL  L + + H+I +P+  I N+  LL           + + LI        
Sbjct: 170 RLKMEKLAALGELAAGVAHEINNPLAGIRNAFALLKRHLPSNVKHYDKLDLIDGEIERIR 229

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWTGEKID-------- 110
                M   +  +     +  +    + +      ++   +V+V    E +         
Sbjct: 230 GITHQMFQLYRPSQQKAVVFNVRRCLEELMSLALPMSRKFKVKVKLECEALPATKELGVD 289

Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  E  +ILLNL   A  +     +V + V  + +  +  +   G      +    
Sbjct: 290 EVLLREGELKQILLNLVHNAIQASSPDQEVQLVVTATDDALVLRVVDRGCGI-ANDVIDS 348

Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D    +          +       L    +  +      +        L +
Sbjct: 349 IFDPFFSTKTTTVGQGMGLGLSVTRGLIEAMRGSIDVSSEPNEGTEFCVQLPR 401


>gi|303247150|ref|ZP_07333425.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491576|gb|EFL51461.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 801

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/266 (10%), Positives = 64/266 (24%), Gaps = 55/266 (20%)

Query: 2   AKNICFNLSSMDLV--------------ALLCSRICHDIISPIGAIHNSLELLDEVGIED 47
            +     L +++L               A L S + H++ +P+ +I    +L+     + 
Sbjct: 497 ERTRDLRLQALELAEANIRLSELDRLKSAFL-STVSHELRTPLTSILGFAKLIGRDFNDQ 555

Query: 48  E-------------------VMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSL 80
                                + ++   +      +                     + L
Sbjct: 556 FLPLATGVPALEAKGRRIASNLAVVYGEAERLTRLINDVLDLNRIESGNMHWRDTRFNPL 615

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----KILLNLFMVAHASLPRGGK 135
             LG     I+  ++    +       +             +++ NL   A       G 
Sbjct: 616 EVLGKAANSIKGLLSQRPEITFVLEMNEDVPEVRMDPDQLIQVVTNLLQNAVKFTR-EGT 674

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-------SHDIQFYYVIL 188
           V ++V+        ++  +G      E        +     D          +       
Sbjct: 675 VRMTVRREGEAVELAIADSGIGIPPGELEAIFGKFHQVGRSDTMGETTKGTGLGLAICRQ 734

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +      R+  E       V   LL 
Sbjct: 735 IVRHYGGRIWAESQLGQGSVFYVLLP 760


>gi|126666428|ref|ZP_01737407.1| sensor histidine kinase [Marinobacter sp. ELB17]
 gi|126629229|gb|EAZ99847.1| sensor histidine kinase [Marinobacter sp. ELB17]
          Length = 572

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 81/231 (35%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSM---DLVALL---CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           M   +   + SM   +  A+L    + + H+I +P+  I  +++ L     + +  +L+ 
Sbjct: 338 MRLRLKRLVKSMVDVERRAVLGQFSAGVAHEIRNPLATIKTTIQALSRKESDPKRQKLME 397

Query: 55  LSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                           L + R      G V+ L  +  ++ + +      +   +     
Sbjct: 398 SVDREIDRVNDVVQLLLDYARPREATAGKVNVLDVVETVKILADAIAHSHRVELIQIEHP 457

Query: 108 KIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +    + ++I   +  +   ++      GG+VTI V+        S+  NG      E 
Sbjct: 458 PVFAWADPSQIRQIVMNLVMNAIQALEGMGGRVTIRVKQHGLAVYISVSDNGPGV-TSEH 516

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + + +    + I+   +       LA  NK  L  + +    + ++  L 
Sbjct: 517 LSHLTEPFFTTKINGTGLGLAICKQLAQANKGNLRFQSVSGEGLKVTLQLP 567


>gi|229170813|ref|ZP_04298427.1| hypothetical protein bcere0007_57120 [Bacillus cereus AH621]
 gi|228612651|gb|EEK69860.1| hypothetical protein bcere0007_57120 [Bacillus cereus AH621]
          Length = 801

 Score =  117 bits (292), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 63/225 (28%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--VMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL     ++    + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETKNNRGYINIVSSEIE 631

Query: 59  SAIIRLKFMR----LAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +     +     +  + ++++ +T +   +  
Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDISVLMDQGLMLLQPQAMMNNIQIRIDFTPDIPLIPC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPTGGEILIQFDKLDNNQIRIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESEVNKGTIVEVTLP 795


>gi|323702488|ref|ZP_08114152.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532627|gb|EGB22502.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 487

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           +A  +   +S ++    +     + + H+I +P+  +    E + +         DE + 
Sbjct: 241 LASRLQEKISQLEKQEQIRREFVTNVAHEIKTPLAVMQGFTETMIDGLVKTEQERDEYLN 300

Query: 52  LIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
            I            + + L     G  D      D+ ++I+       ++ V        
Sbjct: 301 NILEEINRLKRLVNEVLDLKRMEEGHFDFDQEPCDLREIIDRVRRKLTQLAVEKDIHFEI 360

Query: 109 ---------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       S    ++L+NL   A      GG+V + V    N+    +   G    
Sbjct: 361 GVEKNLPLVTCNSDRIEQVLINLIDNAIRHTHTGGRVILRVSSKANQVHLRISDTGEGIA 420

Query: 160 FPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    + +   G+           +    V ++   +  ++  +   +     + +L 
Sbjct: 421 PEDLPMIWERFYKGDKSRTRARGGTGLGLAIVKMIVEGHGGQINVDSKLNVGTTFNIVLP 480


>gi|301309247|ref|ZP_07215191.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300832929|gb|EFK63555.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 846

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 65/233 (27%), Gaps = 22/233 (9%)

Query: 2   AKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +     L     +  L +   + + H+I +P+ AI     ++ E+  E E    + +  
Sbjct: 473 QREKEIELIKVKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAEIDDEVERQSYLDIIH 532

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +  + L+                  +   VD     G+I       +  D  +      
Sbjct: 533 KNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSDVDLIFDLDS 592

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             + +  +     +++ N    A     +G        +  +     +K  G      E 
Sbjct: 593 PSVIVKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE-GDFIRVCVKDTGIGI-SAEN 650

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +  +  ++      +       +      ++  +  +         L 
Sbjct: 651 QRRIFERFIKVDTFQQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLP 703


>gi|254293651|ref|YP_003059674.1| histidine kinase [Hirschia baltica ATCC 49814]
 gi|254042182|gb|ACT58977.1| histidine kinase [Hirschia baltica ATCC 49814]
          Length = 752

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 64/238 (26%), Gaps = 28/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----------GIEDEVM 50
            K      S     ++  + + H++ +P+ AI+   E+L +            G  ++++
Sbjct: 505 EKTKAEKASQAK--SVFLANMSHELRTPLNAINGFSEMLIKEIYGPLGDERYIGYAEDIL 562

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQV 102
              +         L   ++  G        I   +        I                
Sbjct: 563 SSGQHLLDMINDILDMAKIEAGKMSISTREIDPVEAVDSAVRMIRRRAADKDIDLNLTVK 622

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +     R   +++LNL   A      GG + ISV         S+  NG      +
Sbjct: 623 DDIPDIEGDHRAIKQMVLNLVSNAIKFTDPGGYINISVVKENAFVRVSVADNGIGIPKQD 682

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++                   +        A  +  RL  E        +S LL 
Sbjct: 683 IP-RLAQPFEQSSADENRNSKGSGLGLSLTKSFAEMHGGRLEIESEFGEGTTVSFLLP 739


>gi|253565168|ref|ZP_04842624.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251946633|gb|EES87010.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 565

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +L+ +    +E  + IR+ + + 
Sbjct: 323 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 382

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + L+ +               ++ +   +  L +   +          VQ+ +T ++  
Sbjct: 383 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPG 442

Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++++NL   A      G           K+E  F +K  G      +  
Sbjct: 443 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 502

Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + +    +      ++       +  E  +         L 
Sbjct: 503 KVFERFVKLNTFVKGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLP 553


>gi|258514259|ref|YP_003190481.1| sensory histidine kinase AtoS [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777964|gb|ACV61858.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 622

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 68/227 (29%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSS 57
           + +++        L +L  L + + H+I SP+ +I   ++  ++      + + ++    
Sbjct: 385 LRESVN---RQKRLASLGKLVAGVAHEIRSPLTSITGYMQFWNKGRVPSSKSLNIVNQEL 441

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              I     +      + +V             +     +                    
Sbjct: 442 NRLISVTDKLLQFARPSRAVFEPYELNILIRRAVQFFRDIHGSSDVKISCNCAENLPLAW 501

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQI 167
             + +  ++L N+   A+ ++ R G + I+      +N     ++ NG      +    +
Sbjct: 502 IDAHQMEQVLSNILYNAYQAINRTGNLEITTWLEKERNMLCVGVRDNGCGI-PKDVIQNM 560

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +   +   +  E   +   ++   L 
Sbjct: 561 FEPFYTTKSKGTGLGLSIAKEIISAHNGEIQVESELNVGTMVVIYLP 607


>gi|154688131|ref|YP_001423292.1| putative signal transduction histidine kinase [Bacillus
           amyloliquefaciens FZB42]
 gi|154353982|gb|ABS76061.1| putative signal transduction histidine kinase [Bacillus
           amyloliquefaciens FZB42]
          Length = 472

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 56/236 (23%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQ 51
           M + I  +  +            S   H++ +P+ +IH  +E+L     E        +Q
Sbjct: 236 MLERIETSFQAEKEAKERIRQFVSDASHELKTPLTSIHGFIEMLMRGAAEKPEQKEKALQ 295

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVS 103
            +   S  A   ++ +             +         L    Q+            V 
Sbjct: 296 SMYAESARANKLIEDLLFLAKIDRVPSFEMKKGALGDVILEMEAQLKLLGRNRKLEFFVD 355

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              E +    +  +++LNLF  A         V           +  +  NG        
Sbjct: 356 QKIEAVFDKDKMKQVILNLFYNAVQHTDEDTGVITVSLQKDGGIMLMIADNGTGIAPEHV 415

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +       +   +   +  +       V    L 
Sbjct: 416 PHLFDRFYRAETSRSRQSGGAGLGLAITKTIIDSHNGTIEVKSEQGKGSVFIIRLP 471


>gi|71909170|ref|YP_286757.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71848791|gb|AAZ48287.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Dechloromonas aromatica RCB]
          Length = 512

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 18/232 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMS 59
           A+     + +  L + + S + HD+ +P+ A+    +   L +  +    ++  +     
Sbjct: 270 AQASEVKMLTERLRSSILSALSHDLRTPLTAMVGLADSLFLIKPALPATALETAQALHEQ 329

Query: 60  AIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKI 109
           A          + +A    G V        +E+V+   I           V+V    +  
Sbjct: 330 ADRLAGLVGNLLDMARLNAGEVTLRREWQPLEEVVGAGIKLLGSALASHPVKVELPRDLP 389

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163
            L  +     ++L NL   A    P G  + ++ +   +    S+  +G         + 
Sbjct: 390 LLEFDAVLIERVLCNLLENAAKYSPDGTPLLLAAEQEMDVVRVSISDHGPGFPAKRRDDL 449

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F   V G  ES      +       +   +   +  +   D    +S  L K
Sbjct: 450 FKMFVRGESESGKPGTGLGLAICKAIVEAHGGTITADNRPDGGACVSFTLPK 501


>gi|331673737|ref|ZP_08374500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
 gi|331069010|gb|EGI40402.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA280]
          Length = 949

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRTDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|301063084|ref|ZP_07203645.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300442804|gb|EFK07008.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 486

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 61/227 (26%), Gaps = 15/227 (6%)

Query: 2   AKNICFNL-SSMDLVALLC--SRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
            K +  NL  S  L A+    + + H+I SP+  I      +    E     + + +I  
Sbjct: 260 QKKLEENLLRSGRLAAVGTTVAHVVHEIKSPLMIIGGFSHQIRNSLEDENAIKKLDMILD 319

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGE 107
                   +  +         V     +  + Q        +        K    S   E
Sbjct: 320 EVSRLERLVASLGDFTKVYNLVTRPADINSVIQDVLKIFSGIYPPEKYTMKAELASNLTE 379

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 +  ++++N+      ++   G ++I  +  +      +   G      +    I
Sbjct: 380 IQCDPDKLKQVVINIITNGIEAMEESGSISIKTKGCEGGVKIQISDEGIGISDEDIL-HI 438

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +   +   L  E +          L 
Sbjct: 439 FEPFYTTRDRGSGLGLAISYKIVEAHGGELWAESVKGKGTTFFMRLP 485


>gi|283852256|ref|ZP_06369528.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283572338|gb|EFC20326.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 712

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 72/251 (28%), Gaps = 38/251 (15%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +     + +  + +L  L   + H+I +P+G I    +LL E    D  +        
Sbjct: 445 LKQFQEQLIQAQKMESLGKLAGGVAHEINTPLGVILGYSQLLQEDVPPDSQILVDLQTIE 504

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKI 109
           +  ++        L F R A      +     L +   ++    ++D+  +         
Sbjct: 505 KQAKVCRKIVADLLGFSRQAESAKIEMCFNNSLMEAVTLVRHAFSLDQAAIATDLDERMP 564

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEK 163
            +  +     ++ +NL   A  +L R G        +  ++ +        G     P+ 
Sbjct: 565 IIYGDPEKLKQVWINLLANARDALDRKGGTLLVRSRLFAAEQKVTAWFADTGPGI-SPDN 623

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI------------------ID 203
            ++I D    +        +       +  ++   +                        
Sbjct: 624 QSRIFDPFFTTKPVGQGTGLGLSVSFGIIKDHGGTITVASPVPAGFFDAALPADDSGNGA 683

Query: 204 DHNVVLSALLE 214
               V +  L 
Sbjct: 684 GPGTVFTVDLP 694


>gi|253577258|ref|ZP_04854577.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843372|gb|EES71401.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 368

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 68/223 (30%), Gaps = 19/223 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            +  L  L  + + I H+I +P+ AI   ++LL    ++    +  R+           +
Sbjct: 144 QNDKLAMLGKISAAIAHEIRNPLTAIRGFIQLLRPHLLQLGKDEYARIILTEIDRANDII 203

Query: 68  RLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                 +          ++  +          + +    ++ +    E++ +S +  +I 
Sbjct: 204 HEFLNSSKPSAPQKSTVNVSSLLKEVVLLTESEALMKGCQMILHEPNEELLVSIDVKQIK 263

Query: 120 LNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             L  +   ++           G + I  +        S++ NG          ++ D  
Sbjct: 264 QVLLNIIKNAMDAIAEVGGDHQGVIDIRAEKEGKSVCISIQDNGGGMDKGMLS-RLFDPF 322

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   ++  +  + +     + +  L 
Sbjct: 323 FTTKEKGTGLGLSVSYRIIRNHRGNISVDSLKGARTIFTVSLP 365


>gi|227502104|ref|ZP_03932153.1| sensor kinase [Corynebacterium accolens ATCC 49725]
 gi|227077163|gb|EEI15126.1| sensor kinase [Corynebacterium accolens ATCC 49725]
          Length = 508

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 63/230 (27%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           + +++       + +        H++ +P+ ++    EL       D  +    I   S 
Sbjct: 272 LQRSVVTAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATNDVDLVFSKIDKESK 331

Query: 59  SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              + ++ +         RL       ++  + +G   +       V             
Sbjct: 332 RMSLLVEDLLALTRAEGTRLDLRPVDLLELSLSVGSSARAAFPEREVKVVNNAQSIPVVN 391

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
             +    ++LLNL             VT+ ++    + +  +  +G      +    F +
Sbjct: 392 GDADRLHQVLLNLISNGLRHGGEDATVTLQLRRDNKDILVDVIDDGKGMSSEDAAHIFER 451

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +           +    V  L  ++   +  +         +  L 
Sbjct: 452 FYRADSSRTRDTGGSGLGLAIVHSLVEQHGGSISVDSKLGQGTTFTVRLP 501


>gi|261368363|ref|ZP_05981246.1| putative sensor histidine kinase [Subdoligranulum variabile DSM
           15176]
 gi|282569604|gb|EFB75139.1| putative sensor histidine kinase [Subdoligranulum variabile DSM
           15176]
          Length = 363

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S + H+I +P+  I N+ ELL +  + +   Q    + + A  RL  +            
Sbjct: 141 SNVSHEIKTPLAVIQNNAELLQKKQLTEAQRQECTETILQATRRLSSL--ITNMLKLNKL 198

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-----------------ILLNL 122
              +      + D         + +         +                    +  NL
Sbjct: 199 EKQVIQPLPQVYDVCNQLCNCALQFENIWEKKQIDFEAEIEDRALLCADEGLLELVWTNL 258

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSH 179
              A    P GG+VT++      E   ++   G         + F +   G+     + +
Sbjct: 259 LSNALKFTPEGGRVTLAQTSDDREITVTVADTGCGMDEATLQKIFDKFYQGDTSHATEGN 318

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +   +            +  + +
Sbjct: 319 GLGLALVRRILELSDGTITVTSTPGSGSSFTVKIPR 354


>gi|88706907|ref|ZP_01104606.1| two-component system sensory histidine kinase [Congregibacter
           litoralis KT71]
 gi|88698829|gb|EAQ95949.1| two-component system sensory histidine kinase [Congregibacter
           litoralis KT71]
          Length = 508

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 21/248 (8%), Positives = 70/248 (28%), Gaps = 34/248 (13%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + + I   + +           +   + + H++ +P+ AI    E+L +   ++  +   
Sbjct: 251 LRRAIDEEIDAKQSADEANAAKSRFLANVSHELRTPLNAIIGYSEMLHDELDDEAPVDRE 310

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105
           +  S    I L   +L       +D          ++ +     + + ++          
Sbjct: 311 QYQSDLDKIVLSGRQLLALIDDILDLSKIETGKMTLVREAFHPGEALTMAVDALAPLLRR 370

Query: 106 -------------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSL 151
                         +  + + +  ++++NL   A     +G     +  ++ + +   ++
Sbjct: 371 NGNVLECDDFSDLPQIHNDAVKFRQVIVNLLSNAAKFTEQGVIRVSASFEASSAQLSIAV 430

Query: 152 KINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G      +    F   V     ++       +               +  +      
Sbjct: 431 SDTGIGMTEEQQALVFDAFVQAEDTTSNTYGGTGLGLAICRDFCELMGGTIAVQSSPGEG 490

Query: 207 VVLSALLE 214
            V +  L 
Sbjct: 491 SVFTVSLP 498


>gi|320646560|gb|EFX15476.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. 493-89]
 gi|320651931|gb|EFX20306.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H- str. H 2687]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|298483936|ref|ZP_07002106.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298269845|gb|EFI11436.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 533

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    NL  +    L  + + H+I +P+ AI     LL E   + E    +        
Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLIESDDKKERQDYVD-IMQENT 358

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106
             L  +         +++      ++ +       D                        
Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIKEDKPVPVLLAPDLPEY 418

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                 +   +++ N    A      G  +      +++    F++   G      +   
Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAESNEIEFAVTDTGMGIAPDKVDQ 478

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    S      +       +       +  E            
Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGVGSRFWFT 526


>gi|259416197|ref|ZP_05740117.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter sp. TrichCH4B]
 gi|259347636|gb|EEW59413.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter sp. TrichCH4B]
          Length = 658

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     + S  L ++  + + + H+I +P+  I  +++++              + LI
Sbjct: 414 LEETFRQLVMSEKLASIGEITAGVAHEINNPVAVIQGNVDVMRMTLGEAAEPVRTELDLI 473

Query: 54  RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSW 104
               M     +  +           +   VD    + D   +++  I+  +     Q   
Sbjct: 474 DNQVMRIGAIVGKLLQFARPSEFGTFAEHVDVAAVVRDCLVLVDHVISKQEVRVLTQFDD 533

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARF 160
                    E  ++++N+ + A  ++   G + I+V  ++ +    +       G     
Sbjct: 534 APCVRIDPGELQQVVINIIINASQAMDGNGTLAITVASAERDAQMGVALRIADTGPGIPA 593

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +   +       L      R+               L 
Sbjct: 594 DRIDHIFDPFFTTKQGEGTGLGLSISQTLIQRAGGRITVRNRRARGAEFLIWLP 647


>gi|212693148|ref|ZP_03301276.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
 gi|212664253|gb|EEB24825.1| hypothetical protein BACDOR_02655 [Bacteroides dorei DSM 17855]
          Length = 494

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 54/221 (24%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLK 65
            S  L +   + + H+I +P+ AI     LL     +     E + +I  +    ++ + 
Sbjct: 268 QSDKLKSAFLANMSHEIRTPLNAIIGFSNLLVSEEMDGEESKEFVSIINQNCEQLLVLIS 327

Query: 66  FMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +                       L  +   + +        +        E +  +  
Sbjct: 328 DIIDMSKIESNSIEFKIQKQSLHQILSEIYQCQSLNIPSKIEFRLELPEEDTEIMIDTTR 387

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             +++ NL   A      G     S           +K  G      +            
Sbjct: 388 FKQVINNLINNAIKFTMYGHITLGSKILQNGTIDIYVKDTGMGMPQEKLAHIFERFYKMD 447

Query: 175 TI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +    +  +    I+      +  + 
Sbjct: 448 SFKPGAGLGLSICKTIIEHMQGEINVTSIEGKGSNFTITIP 488


>gi|197106701|ref|YP_002132078.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196480121|gb|ACG79649.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 554

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 54/221 (24%), Gaps = 25/221 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A L + + H+I +P+  +    + +    +     + + +   S    L  +      + 
Sbjct: 184 AFLAA-MSHEIRTPLNGVLGMAQAMAMEDLPPHQRERLEVIRQSGESLLAILNDLLDLSK 242

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRERAKIL 119
                + L D E  I++         V+                             +IL
Sbjct: 243 IEAGKLELEDAEFDIQELARGAHATFVAVAEARGLAFEVAVAPAARGVYRGDPLRVRQIL 302

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173
            NL   A      G       +         ++  G     PEK  ++            
Sbjct: 303 HNLISNALKFTEAGSVRVTVGRSGGA-LSLVVQDTGIGI-PPEKAARLFQKFEQADASTT 360

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       LA      +  E         + LL 
Sbjct: 361 RRFGGTGLGLAICRDLAQMMGGSIGVESAPGEGATFTVLLP 401


>gi|218441466|ref|YP_002379795.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218174194|gb|ACK72927.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 376

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 67/235 (28%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + K          L +   S   H+  +P+  I    +LL           + + ++ I+
Sbjct: 139 LRKEAEIQSQ---LKSQYISLASHEFRNPLTNIKAWAQLLQLYGHTWSEEKQQKSLERIQ 195

Query: 55  LSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +++      L+ +       +   +   V   +       +    I +  +  ++   E 
Sbjct: 196 IAAEQMNQLLEDISTLGRTDIDKNFFHPVQINLSQFCENLLKIHQIMIGDKYSLTLICEG 255

Query: 109 ID-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       A +L NL        P GGK+ + +   + E I  ++  G      + 
Sbjct: 256 NCEEIYLDEHLLAHLLNNLISNGVKYSPHGGKIILKLSCQETEIILQVQDQGIGIPQGDL 315

Query: 164 FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     + +       +    V  +   +   +  +  +         L +
Sbjct: 316 HHLFEPFQRATNVGSIPGTGLGLVIVKRVVELHGGTINIQSKEGKGTTFIIRLPR 370


>gi|168761345|ref|ZP_02786352.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217327801|ref|ZP_03443884.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
 gi|189368285|gb|EDU86701.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4501]
 gi|217320168|gb|EEC28593.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. TW14588]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|330814970|ref|YP_004358675.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
 gi|327367363|gb|AEA58719.1| Hpt sensor hybrid histidine kinase [Burkholderia gladioli BSR3]
          Length = 1125

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 59/247 (23%), Gaps = 36/247 (14%)

Query: 3   KNICFNLSSMDLVA---------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + +   L    L A          L + + H+I +P+ AI  +LELL    +       +
Sbjct: 499 QALQHQLRHAKLAADQANAAKSAFLAA-MSHEIRTPLNAILGNLELLGHSALNPLQRDRL 557

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------- 102
                S+   L  ++    ++      + L  +   + D I     +             
Sbjct: 558 DTIRASSNGLLAIIQDVLDFSKIEAGEMRLEHMHFRLVDTITRSLAMFAPAAHLKRIALV 617

Query: 103 -----SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLK 152
                +            A+++ NL   A     +G       V           +  + 
Sbjct: 618 GQFRAAIDQPMRGDPGRLAQVVNNLLSNAIKFTGQGRVTLSLDVERLPCARGGMLVIEVA 677

Query: 153 INGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G         T                    +       L  +    +  +       
Sbjct: 678 DTGIGIEAAHLSTLFNAFMQADSSISRRFGGTGLGLALCQRLVTQMGGTIDVQSEPGQGS 737

Query: 208 VLSALLE 214
             +  + 
Sbjct: 738 RFTVRMP 744


>gi|299535467|ref|ZP_07048789.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
 gi|298729228|gb|EFI69781.1| alkaline phosphatase synthesis sensor protein [Lysinibacillus
           fusiformis ZC1]
          Length = 511

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 71/219 (32%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L      +  +    +++I   S    + ++ +     
Sbjct: 292 FVANVSHELRTPITSIKGFSETLLDGAYKDEKMLISFLEIIYKESNRLQMLIQDLLELSK 351

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                  +     G  D LI   ++     D   +  +V +    + +  +    +I+ N
Sbjct: 352 IEQHGFTVNIMPMGLQDVLIRGAELTAPRLDEKNMSFQVDIERDVQVMGDANRIIQIVTN 411

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTI 176
           L   A    P    V+I +++++   I  ++  G      E    F +            
Sbjct: 412 LITNAITYSPENTTVSIRLKENETHGIIEIEDQGIGIEKHEIARVFERFYRVDRARSRNS 471

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  L   +  R+  E        +  ++ K
Sbjct: 472 GGTGLGLAIVKHLVEAHHGRIQVESEVGIGTKMIVMIPK 510


>gi|283470770|emb|CAQ49981.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 564

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 346 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 405

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    +  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 406 AEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 465

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 466 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 525

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 526 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562


>gi|258423145|ref|ZP_05686038.1| sensor protein srrB [Staphylococcus aureus A9635]
 gi|257846595|gb|EEV70616.1| sensor protein srrB [Staphylococcus aureus A9635]
          Length = 582

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 423

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    +  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 424 AEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 483

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 484 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 543

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 544 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 580


>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
 gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas
            ingrahamii 37]
          Length = 1574

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 28/237 (11%)

Query: 5    ICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +   +   ++  +   + + H+I +P+ AI    EL     +  ++   +     S    
Sbjct: 816  MNRAIHKANMAKSEFLANMSHEIRTPMNAIIGLSELSLNQDMTPQLRDYLSKIHSSGNSL 875

Query: 64   ----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                               +         V   I       + E  I +   +       
Sbjct: 876  LGIINGILDFSKIEAGKLDLENIEFSLLDVLDNISNTFYFTLAEKNIELITSIDPDVPWH 935

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEK 163
             +       +I  NL   A     +G     +      D +   +FS+   G      ++
Sbjct: 936  LVGDPLRTGQIFTNLINNAIKFTNKGQITICASCLEKDDKQVRLLFSVADTGLGI-PKDR 994

Query: 164  FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +                 +       L  E   R+  E       V S  LE
Sbjct: 995  IASLFEPFAQADGSTSRKHGGTGLGLSICKRLVEEMNGRIWIESEQGKGSVFSFELE 1051


>gi|91789364|ref|YP_550316.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91698589|gb|ABE45418.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 521

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +A+   + L   +L A   + + HD+  P+ AI    ELL       ++      +    
Sbjct: 275 LAEKDNYELKGAELEAF-ATAVSHDLRGPLQAIAGFSELLARSQRERLDASGQLFLDRVH 333

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTG 106
            SA+     +    G+  S            +                    +       
Sbjct: 334 ASALQMGCMVEDYLGFLKSNREQTLSVTELDLKHLAHAVFAELALVPGQKPAQFVCEELP 393

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLA-- 158
                     ++L+NL   A     +     + V         ++ + F ++ NG     
Sbjct: 394 RAWGDEAMLRQVLVNLIGNALKYSAQREHPMVEVGAIAGEEAGEDCHTFFVRDNGAGLDL 453

Query: 159 -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + F      +  +      +    V  +   +  R+L E   D        L 
Sbjct: 454 ANAAKLFEPFQRFHSTAEFPGTGVGLAIVKRIVERHGGRMLAESQPDAGATFFFTLP 510


>gi|299534531|ref|ZP_07047863.1| sporulation kinase A [Lysinibacillus fusiformis ZC1]
 gi|298729904|gb|EFI70447.1| sporulation kinase A [Lysinibacillus fusiformis ZC1]
          Length = 492

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 61/216 (28%), Gaps = 12/216 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIR 63
            ++++V  + + I H+I +P+ ++    ELL     ++  M L       +         
Sbjct: 256 QALNVVGQMAASIAHEIRNPLTSLKGFTELLKLNADDESRMYLSVIDSELQRMEQILSEL 315

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
           L   +        ++    +  + + +  D +  +  +Q   T  ++ +     ++   L
Sbjct: 316 LVLSKPTTMKVELLELDHIVKQVIEFMLPDALMKNIMIQYISTSNQVYIGGNENRLKQVL 375

Query: 123 FMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
             +   ++               +        +K  G           +      +    
Sbjct: 376 MNLIKNAMESMNNGGTITVEMATNDCAIVELMIKDEGVGMDSTTL-QNLFQPFYTTKSTG 434

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +V  +  E++  +                 
Sbjct: 435 TGLGLAFVKKVIEEHEGVIGVSSELQKGTCFHLQFP 470


>gi|260772818|ref|ZP_05881734.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260611957|gb|EEX37160.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 684

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     ++   L AL  L + I H+I +P   I  + EL+     +        + ++
Sbjct: 434 LNQTRNKLIAHEKLAALGELTAGIAHEINNPTAVILGNTELIRFELADQAPRVAEEIEAI 493

Query: 59  S--------------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                             R   ++    +      +     + +       V+   Q+  
Sbjct: 494 LLQVDRIRNITRSLLQYSRHGGVQDKITWQRVNPIIEESITLVKAGSKKREVEFITQLQA 553

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +IL+NL + A  ++   G++ I  +D + +      I  ++ +G    
Sbjct: 554 RCSVEVNHHHLLQILVNLQINAIHAMQGKGQLIIHSEDWQQDGKILGAIIHVQDHGCGI- 612

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE+ ++I      +      +       L  +    +    ++      S  L
Sbjct: 613 KPEQLSKIFAPFYTTKRQGTGLGLSVSQSLLSQVGGEIRVHSVEGQGSTFSVYL 666


>gi|60682677|ref|YP_212821.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
 gi|60494111|emb|CAH08903.1| putative two-component system, sensor kinase [Bacteroides fragilis
           NCTC 9343]
          Length = 543

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +L+ +    +E  + IR+ + + 
Sbjct: 301 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDVEEKEEYIRIVTSNN 360

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + L+ +               ++ +   +  L +   +          VQ+ +T ++  
Sbjct: 361 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPG 420

Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++++NL   A      G           K+E  F +K  G      +  
Sbjct: 421 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 480

Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + I    +      ++       +  E  +         L 
Sbjct: 481 KVFERFVKLNTFIKGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLP 531


>gi|205354425|ref|YP_002228226.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205274206|emb|CAR39224.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
          Length = 463

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 238 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 297

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 298 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 357

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 358 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 416

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 417 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 456


>gi|197249706|ref|YP_002149081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197213409|gb|ACH50806.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
          Length = 465

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|110598781|ref|ZP_01387041.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110339608|gb|EAT58123.1| PAS:Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 932

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 56/234 (23%), Gaps = 24/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMS 59
           +      S  L     + I H+I +P+  I    ELL E       + E ++LI  S   
Sbjct: 556 SKEKAEESDRLKTAFLANISHEIRTPMNGILGFAELLKEPHLSGEEQAEYIELINQSGKR 615

Query: 60  AIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------SWT 105
            +  +  +             +         L  +        A    +           
Sbjct: 616 MLALINDIVDISRIEAGETMIHVEPTHVNKLLHSLCTFFRPLAANKNLLLSCNNGLSDEE 675

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                 S +  +IL NL          G      ++       FS+  +G          
Sbjct: 676 CVIETDSAKLTQILTNLVQNGLKFSVEGEVRVGYIRKEDL-LEFSVSDSGIGIPESMKES 734

Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +       +   +               +  E  + +       L 
Sbjct: 735 IFERFRQVDNSLTRHHEGSGLGLSISKAYVEMLGGTIRVESGEGNGSTFIFTLP 788


>gi|108760350|ref|YP_632615.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108464230|gb|ABF89415.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 615

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           +       + +  L A+  L + + H+I +P+  I  +++LL         + E ++ I 
Sbjct: 382 LKAAQAQLVEAQKLAAVGQLGAGVAHEINNPLAGILGNVQLLMLDRGAADPDLESLRKIE 441

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------RVQVSWT 105
            S+       + +          +      +        +   +          V     
Sbjct: 442 QSAKRCKEITQNLLRFSQQRERAELRPVDLNAVVRDALSLTEHQLRGDGVALTSVLGDGL 501

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEK 163
                     ++++L L   A  ++    +    +   +        ++  G        
Sbjct: 502 ARVRADPGHLSQVVLALVSNARTAMLNSPEKRLTLRTGEVGGFGFLEVEDTGKGIAPN-V 560

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++I +    +     +  +       +  E    +      +     +  L K
Sbjct: 561 RSRIFEPFFTTKDVWSNVGLGLSVAWRVVTEAGGSIEVRSEVEQGSCFTVKLPK 614


>gi|89068749|ref|ZP_01156135.1| Sensory transduction histidine kinase [Oceanicola granulosus
           HTCC2516]
 gi|89045712|gb|EAR51774.1| Sensory transduction histidine kinase [Oceanicola granulosus
           HTCC2516]
          Length = 480

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + +      +++ L     + + H++ +P+ +I  SL+L++    G      + +     
Sbjct: 211 LEREHERAKAALVLRTQFVAIVSHELRTPLTSIKGSLDLINSGRFGDFPPQAKSLLQMID 270

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----------------DKRVQ 101
               RL  +         ++      + + +                        + +V 
Sbjct: 271 RNSRRLADLVDDLLDLQKLEEGRMTFEKKTIDIRTFIADALTSHEGLAKRYDVRLNVKVD 330

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +             ++L N+   A    P  G V I +          ++  G      
Sbjct: 331 CANPVYVHTDPSRLMQVLGNIISNAAKFSPENGDVDIWLDVENGRVRVYVRDRGVGIPPG 390

Query: 162 EKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +K         +D + +       +       +       +  E            L 
Sbjct: 391 QKEAVFGRFTQIDASDQRKFGGTGLGMNISREIIEAIGGTIDYESEVGKGTTFVIELP 448


>gi|324325456|gb|ADY20716.1| sporulation kinase B [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 402

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSGTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|303232478|ref|ZP_07319166.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Atopobium vaginae PB189-T1-4]
 gi|302481402|gb|EFL44474.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Atopobium vaginae PB189-T1-4]
          Length = 548

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 62/235 (26%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA  +  ++        L S + H++ +P+ A+  ++E + +     ++E  + +     
Sbjct: 302 MASELERDIKFEH---RLTSDVAHELRTPLMAMLATVEGMQDGVLPADNEHYETVAAEVR 358

Query: 59  SAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                +  M                       V SL+ +                     
Sbjct: 359 RLSRLVDAMLRLSRIENGTRALKIETSDAVYLVKSLVAMQQQMFSERGLRLRFDDKTNEH 418

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                  S    + + N+   A    P  G V   +  +++E    +   G      +  
Sbjct: 419 ECMVEMDSDLIREAVTNILSNALRYTPSDGWVVAGISKTRSEVNIFVSDTGIGIAKEDIP 478

Query: 164 --FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +  ++  R+  E         +  + 
Sbjct: 479 RVFARFWRSDASRGRVSGGLGIGLALTKEIIDKHHGRISVESTLGKGTTFTLSIP 533


>gi|237749393|ref|ZP_04579873.1| osmosensitive K+ channel signal transduction histidine kinase
           [Oxalobacter formigenes OXCC13]
 gi|229380755|gb|EEO30846.1| osmosensitive K+ channel signal transduction histidine kinase
           [Oxalobacter formigenes OXCC13]
          Length = 895

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLS 56
           A+     + S  L   L S I HD+ +P+ A+    + L     +      E++  I  S
Sbjct: 652 AQKTVVQMESEKLRNSLLSAISHDLRTPLAALVGLADTLKLTSPDAKASEKEIIDSIHHS 711

Query: 57  SMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +M     +  +                   L  +          +  ++ + V       
Sbjct: 712 AMRMNDLVNNLLDMARLESGTVQLNRQWQPLEEVIGSALSSCSSLLKERPINVQLDDSLP 771

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
            ++ +     ++L N+   A    P    + I+        I ++  +G           
Sbjct: 772 LVNIDAVLIERVLANILENASKYTPAHSSIEINGFRQDGNIIITIDDHGPGLPPGRENTI 831

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   G+ E+      +       +   +   +  E   +     +  L 
Sbjct: 832 FEKFERGSKENATPGVGLGLAISKAVMKAHGGSIEGESRYNGGARFTLRLP 882


>gi|228998513|ref|ZP_04158101.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17]
 gi|229005989|ref|ZP_04163679.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4]
 gi|228755257|gb|EEM04612.1| hypothetical protein bmyco0002_29110 [Bacillus mycoides Rock1-4]
 gi|228761238|gb|EEM10196.1| hypothetical protein bmyco0003_30740 [Bacillus mycoides Rock3-17]
          Length = 449

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK +    +S  +     S + H+  SP+ +I    + L    +             S 
Sbjct: 207 MAKRLR---NSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNDLTKSEQTHYLEIIESE 263

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             R+  +        S+D        +         D    + W     +L+ E      
Sbjct: 264 SRRMSSLCKQLLILASLDKEDLTLRKQSFDLGKQIKDTIFMLEWEWRTKELAVEMDVPNM 323

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     ++ +NLF  +      GG +    ++ + E   S+   G      E    
Sbjct: 324 QIYGDENLLHQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 383

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +      ++   +    V  +   +   +  +       + S  L K
Sbjct: 384 FDRFHKVDTARNRNVNGSGLGLSIVKKVIDLHSGAITVDSELGKGTIFSIYLPK 437


>gi|163853824|ref|YP_001641867.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163665429|gb|ABY32796.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 693

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 65/230 (28%), Gaps = 23/230 (10%)

Query: 8   NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
              + ++  +   + + H++ +P+  I    +LL +  ++ E    +     S       
Sbjct: 163 RAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGL 222

Query: 64  -LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110
               +  +    G +D      D+  +             +  + +   +       ++ 
Sbjct: 223 VDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVG 282

Query: 111 LSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
            +    +IL+NL   A         G  +  S +      + +++  G           F
Sbjct: 283 DADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILF 342

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+  ++ +   +       L       +              +L 
Sbjct: 343 EEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLP 392


>gi|254563786|ref|YP_003070881.1| PAS sensor hybrid histidine kinase [Methylobacterium extorquens
           DM4]
 gi|254271064|emb|CAX27071.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens DM4]
          Length = 703

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 65/230 (28%), Gaps = 23/230 (10%)

Query: 8   NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
              + ++  +   + + H++ +P+  I    +LL +  ++ E    +     S       
Sbjct: 173 RAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGL 232

Query: 64  -LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110
               +  +    G +D      D+  +             +  + +   +       ++ 
Sbjct: 233 VDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVG 292

Query: 111 LSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
            +    +IL+NL   A         G  +  S +      + +++  G           F
Sbjct: 293 DADRVRQILVNLAGNAIKFTQAGGVGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILF 352

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+  ++ +   +       L       +              +L 
Sbjct: 353 EEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVVLP 402


>gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
 gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
          Length = 403

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 65/240 (27%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +  + +   + I H++ +P+ AI    ELL E   + ++  L+       
Sbjct: 157 LQKAKQAAEEANSVKSQFMANISHELRTPMNAIIGYSELLKEEAEDLQITGLVDDIDNIE 216

Query: 61  IIRLKFMRLAF------------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                 + +                     +   +        ++ ++++ +   +    
Sbjct: 217 KAGRHLLDIINDVLDFSKIETGKMTLSLENFEILILINDIKMIVQPLVKNQLNHLEIDCA 276

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLAR 159
              G       +  +ILLNL   A      G    I  ++S+       F +   G    
Sbjct: 277 DNIGAMYADLSKVRRILLNLLSNASKFTENGTIKLIVSKESEENTQWIKFKVNDTGIGIT 336

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++          DG+         +            +  +  E         +  L 
Sbjct: 337 DEQQQQIFHTFTQADGSSTRKYGGIGMGLTVTKRFVDIMQGTIHVESQLGQGSTFTVRLP 396


>gi|17231257|ref|NP_487805.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132899|dbj|BAB75464.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 443

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 72/230 (31%), Gaps = 23/230 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAI 61
           L +  L +   + + H++ +P+ AI    ++L             D V +++       +
Sbjct: 168 LEASRLKSQFLATMSHELRTPMNAIIGFAQILSRPKFGNLTGQQADMVERILNNGKHLLM 227

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTGEK-ID 110
           +  + +  +    G ++    L D+ +VI   +   +           VQ+       ++
Sbjct: 228 LLNEVLDFSKLEEGRLELKPELFDLTKVINAVVMEMRSLAEAKKLSLLVQIDLQNSLLVN 287

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-----KFT 165
                 +IL+NL   A      G           +     +K  G      +     +  
Sbjct: 288 DPVRIKQILINLLSNAIKFTDSGSIWIDVKDLPGSWVEIKVKDTGIGIAAKDFKYIFEAF 347

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + VD ++        +    +  L      ++  E       + +  L +
Sbjct: 348 RQVDQSITRKYPGTGLGLAIIDSLVQMMSGKIFLESQLGVGSIFTITLPR 397


>gi|329930500|ref|ZP_08284040.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328934878|gb|EGG31368.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 459

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 22/229 (9%)

Query: 8   NLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSA 60
            L   ++V   L + + H++ +P+  +   L+LL       E  +   +   +   +   
Sbjct: 217 KLEQSEMVRRNLVADVAHELRTPLTIVRGKLDLLQQNRQPIEPELLLPIQDELIRLTRLV 276

Query: 61  IIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +           V     +        E++  +  A +  ++++   E+  +  + 
Sbjct: 277 GDLHQLSLAEAKQLPLVRIPTDMLVLLSQIRERLEPEAEAKNLALRLTSATERTSVPVDP 336

Query: 116 ---AKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
               ++ LNLF+ A    P GG V +S   +         ++  G               
Sbjct: 337 SRITQVFLNLFVNAIRYTPHGGLVHVSLLEESPSGMLRIDIRDTGPGIEEEHLPYLFNRF 396

Query: 171 NVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +           +   +  E         +  L 
Sbjct: 397 YRTDEARARHQGGMGLGLAIAKEFIVSHGGTIQAESKPGQGTTFTVRLP 445


>gi|304408454|ref|ZP_07390099.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304342577|gb|EFM08426.1| multi-sensor signal transduction histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 771

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 74/225 (32%), Gaps = 12/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58
            +     + S  L  V  L + + H+I +P+  +   ++L      +E + + L+     
Sbjct: 529 KETEERLVRSEKLSIVGQLAAGVAHEIRNPLTTLRGFVQLGASRGKLEADHLGLMLSELD 588

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK---ID 110
              + +    +      +      +  + +     +  +      R++ +        + 
Sbjct: 589 RINLIVSDFLVLSKPQKTQFVKTDICQLMRDTLHLLGVEASMRRIRLKPTLDPNGAALVC 648

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++ LNL      ++P GG +T +V  S +    S+   G      +   ++ + 
Sbjct: 649 EPNRLKQVFLNLLKNGMEAMPGGGVLTANVFMSGDVIEISIADTGRGIPAKDLS-RLGEP 707

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              S  + + +       +  ++   ++   I      +   L +
Sbjct: 708 FFTSKDNGNGLGLMVSQQIIAQHHGSMMFHSIVGIGTRIEIRLPR 752


>gi|301022436|ref|ZP_07186318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|300397537|gb|EFJ81075.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRTDGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|228989787|ref|ZP_04149767.1| hypothetical protein bpmyx0001_5560 [Bacillus pseudomycoides DSM
           12442]
 gi|228995977|ref|ZP_04155633.1| hypothetical protein bmyco0003_5730 [Bacillus mycoides Rock3-17]
 gi|229003594|ref|ZP_04161410.1| hypothetical protein bmyco0002_5670 [Bacillus mycoides Rock1-4]
 gi|228757636|gb|EEM06865.1| hypothetical protein bmyco0002_5670 [Bacillus mycoides Rock1-4]
 gi|228763750|gb|EEM12641.1| hypothetical protein bmyco0003_5730 [Bacillus mycoides Rock3-17]
 gi|228769934|gb|EEM18517.1| hypothetical protein bpmyx0001_5560 [Bacillus pseudomycoides DSM
           12442]
          Length = 418

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 16/222 (7%), Positives = 63/222 (28%), Gaps = 20/222 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMR 68
              +   + + H++ +P+  +    ++  +         + + +I+  +      ++ + 
Sbjct: 194 KERSEFLASVAHELRTPLTYVRGYADIAMKNSTPPEQRQKYLSIIKDEADYITNLVQDLF 253

Query: 69  LAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           L                     L  +     ++ +   +        +       +   +
Sbjct: 254 LLAQMEKHNFSIQAKEVHLQTFLSRIVTKVNIMYEAKHIIVSSTCPSSLSIALDEQRFEQ 313

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++N+   A+   P   ++TISV + K +   +++  G      +               
Sbjct: 314 VIINILNNAYVHSPEHSRITISVTEHKTQLEIAIQDTGEGIPEEDIPHIFERFYRVDKAR 373

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +     +    V  +   +   +      +     +  L 
Sbjct: 374 SRSTGGTGLGLAIVKEIVELHGGEITVTSEVNQGSCFTMSLP 415


>gi|194737287|ref|YP_002117074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197301231|ref|ZP_02664657.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194712789|gb|ACF92010.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287721|gb|EDY27112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|322616282|gb|EFY13192.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617275|gb|EFY14177.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625953|gb|EFY22768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626649|gb|EFY23451.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631484|gb|EFY28241.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635197|gb|EFY31915.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322642598|gb|EFY39194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322646809|gb|EFY43313.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322650807|gb|EFY47200.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655893|gb|EFY52194.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322657292|gb|EFY53571.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665554|gb|EFY61739.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669737|gb|EFY65882.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322670984|gb|EFY67116.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322679192|gb|EFY75245.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679350|gb|EFY75397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322688117|gb|EFY84081.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323195790|gb|EFZ80965.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200695|gb|EFZ85768.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202184|gb|EFZ87240.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323209295|gb|EFZ94230.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323211620|gb|EFZ96457.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323218042|gb|EGA02755.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323221331|gb|EGA05753.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225742|gb|EGA09963.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230970|gb|EGA15087.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235752|gb|EGA19834.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323240066|gb|EGA24112.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242601|gb|EGA26623.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323249691|gb|EGA33598.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323252574|gb|EGA36415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256932|gb|EGA40644.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323262045|gb|EGA45609.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323263949|gb|EGA47463.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323268438|gb|EGA51908.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 465

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  +DS  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKDSGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|161367569|ref|NP_288798.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EDL933]
 gi|162139775|ref|NP_311134.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. Sakai]
 gi|168749626|ref|ZP_02774648.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754970|ref|ZP_02779977.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|168767843|ref|ZP_02792850.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773059|ref|ZP_02798066.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780072|ref|ZP_02805079.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|168787129|ref|ZP_02812136.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|168798388|ref|ZP_02823395.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|195935599|ref|ZP_03080981.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. EC4024]
 gi|208807530|ref|ZP_03249867.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813546|ref|ZP_03254875.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818558|ref|ZP_03258878.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396281|ref|YP_002271632.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254794118|ref|YP_003078955.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|261223323|ref|ZP_05937604.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259127|ref|ZP_05951660.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. FRIK966]
 gi|291283469|ref|YP_003500287.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|187771011|gb|EDU34855.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4196]
 gi|188016099|gb|EDU54221.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4113]
 gi|189002160|gb|EDU71146.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357730|gb|EDU76149.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362893|gb|EDU81312.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4486]
 gi|189372926|gb|EDU91342.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC869]
 gi|189379027|gb|EDU97443.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC508]
 gi|208727331|gb|EDZ76932.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734823|gb|EDZ83510.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738681|gb|EDZ86363.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157681|gb|ACI35114.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           O157:H7 str. EC4115]
 gi|254593518|gb|ACT72879.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. TW14359]
 gi|290763342|gb|ADD57303.1| Sensor histidine kinase/response regulator RcsC [Escherichia coli
           O55:H7 str. CB9615]
 gi|320192155|gb|EFW66800.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641047|gb|EFX10526.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. G5101]
 gi|320657656|gb|EFX25454.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320663112|gb|EFX30425.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O55:H7 str. USDA 5905]
 gi|320668012|gb|EFX34915.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O157:H7 str. LSU-61]
 gi|326339572|gb|EGD63383.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1125]
 gi|326344033|gb|EGD67794.1| Two-component sensor protein RcsC [Escherichia coli O157:H7 str.
           1044]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|159900574|ref|YP_001546821.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893613|gb|ABX06693.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 885

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 73/233 (31%), Gaps = 27/233 (11%)

Query: 9   LSSMDLVALL----CSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSM 58
           +++ +L   +     +   H++ +P+ +I   ++LL           + + + +++ +  
Sbjct: 637 ITASELADRMKTEFVATASHELRTPLTSISGYIDLLMLNTLGPLTEQQRQFLSVVKNNIE 696

Query: 59  SAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------VSWTG 106
                    + ++   +G V       +++++I+  +    +                  
Sbjct: 697 RLNAILNDLLDVSRIESGKVRLQRKPINLDELIQSTVMSIHQQWSGKQISLALDVPDDLP 756

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I       +I+ NL   A+     GG++ + V +  +    ++K +G      ++   
Sbjct: 757 PMIADPERMRQIVTNLISNAYKYTRDGGRIDVVVSNGGDSVTLAVKDSGVGIAADDQKHI 816

Query: 167 IVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +       L   +  ++  +  +      +  L 
Sbjct: 817 FTRFFRSENPLKEQAGGTGLGLNITKSLVELHGGKIWFDSEEGRGTTFNVQLP 869


>gi|82751086|ref|YP_416827.1| respiratory response protein B [Staphylococcus aureus RF122]
 gi|82656617|emb|CAI81041.1| staphylococcal respiratory response protein B [Staphylococcus
           aureus RF122]
          Length = 583

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAIVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    +  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEIQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWRYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCAENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|53714664|ref|YP_100656.1| hypothetical protein BF3378 [Bacteroides fragilis YCH46]
 gi|52217529|dbj|BAD50122.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
          Length = 626

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 70/231 (30%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +L+ +    +E  + IR+ + + 
Sbjct: 384 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDVEEKEEYIRIVTSNN 443

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + L+ +               ++ +   +  L +   +          VQ+ +T ++  
Sbjct: 444 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKEPG 503

Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++++NL   A      G           K+E  F +K  G      +  
Sbjct: 504 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 563

Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + +    +      ++       +  E  +         L 
Sbjct: 564 KVFERFVKLNTFVKGTGLGLAICRVIIERLGGTIGVETREGKGSCFWFRLP 614


>gi|87303395|ref|ZP_01086183.1| adaptive-response sensory kinase [Synechococcus sp. WH 5701]
 gi|87282043|gb|EAQ74005.1| adaptive-response sensory kinase [Synechococcus sp. WH 5701]
          Length = 397

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 64/231 (27%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           + +     +  + +   L   + H++ +P+ A   +L+ L           +    +L  
Sbjct: 154 LRQENETLIERLRVQERLLRMVAHELRTPLTAAKLALQSLQLGHINNTRCRDVLDRRLDD 213

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +  +S  +                          + ++E++             +   + 
Sbjct: 214 IEHLSKDLLEVGTTRWEALFNPQRLDLAPVAAEAILELEKLWVGRTLRLITDIPADLPDV 273

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A    P  G+VT+S+   +      S+   G      E+    
Sbjct: 274 FADQRRMRQVLLNLLENALKYTPDSGEVTLSLLHRTSQWVQVSVCDTGPGIPRGEQERIF 333

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++       T     +       +   +  R+               + 
Sbjct: 334 LERVRLPQTSGTTSGFGVGLSVCRRIVEVHGGRIWVVSEPGEGACFHFTVP 384


>gi|333016950|gb|EGK36274.1| sensor kinase protein rcsC [Shigella flexneri K-227]
          Length = 880

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 383 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 442

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 443 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 502

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 503 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 561

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 562 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 620


>gi|332755266|gb|EGJ85630.1| sensor kinase protein rcsC [Shigella flexneri K-671]
          Length = 880

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 383 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 442

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 443 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 502

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 503 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 561

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 562 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 620


>gi|332534764|ref|ZP_08410591.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332035788|gb|EGI72273.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 975

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 54/242 (22%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L      A           + + H+I +P+ +I    +LL +  ++ E  + +
Sbjct: 383 RKEYEEKLEQAKFKAEEAAHAKQSFMANMSHEIRTPMNSIIGFSDLLMDTPLDQEQQKHL 442

Query: 54  RLSSMSAIIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
              + +A   L+ +                         V   I      +  +  + + 
Sbjct: 443 VTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFSLKPVIDSIISTFWLEAKKKDLELK 502

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             ++ S +           ++L NL   A      G               F ++  G  
Sbjct: 503 LHIKESVSSTYYGDPDRLRQVLTNLIGNAIKFTEEGSVTVTVGMTQNQHLFFEVQDTGIG 562

Query: 158 ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                            G          +       L       +               
Sbjct: 563 IAKDRIQAVFQPFEQADGTTTRRFGGTGLGTTISKQLVELMGGTINLVSELGKGTCFYFS 622

Query: 213 LE 214
           L 
Sbjct: 623 LP 624


>gi|323977585|gb|EGB72671.1| RcsC Alpha-Beta-Loop [Escherichia coli TW10509]
          Length = 708

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 211 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 270

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 271 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 330

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 331 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 389

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 390 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 448


>gi|323967660|gb|EGB63072.1| RcsC Alpha-Beta-Loop [Escherichia coli M863]
 gi|327252487|gb|EGE64146.1| sensor kinase protein rcsC [Escherichia coli STEC_7v]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|320177232|gb|EFW52240.1| Two-component sensor protein RcsC [Shigella dysenteriae CDC
           74-1112]
          Length = 787

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 290 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 349

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 350 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 409

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 410 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 468

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 469 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 527


>gi|307138876|ref|ZP_07498232.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli H736]
          Length = 708

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 211 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 270

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 271 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 330

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 331 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 389

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 390 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 448


>gi|292493504|ref|YP_003528943.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291582099|gb|ADE16556.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 696

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 16/234 (6%), Positives = 65/234 (27%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQ----- 51
           + +    +++ + L + L + + H++  P+ AI  +    L+LL    +  E  +     
Sbjct: 457 LQQAELAHIARLGLASELTAGLAHELNQPLTAITTNAHTCLQLLHSGMVNMEKFEEILEE 516

Query: 52  ---LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
                  +          +R       +V+    + ++ ++   +      ++++     
Sbjct: 517 VTRQSERAGEIVHHLRALVRKTEYRKTAVNLNDLVHEVARLANIEARQQGVQLRLELFAS 576

Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIF-----SLKINGNLAR 159
              +  +  ++   +      +  ++         +    +         ++   G    
Sbjct: 577 LPPVWGDNIQLQQVILNLVCNSIEAMGETSDGKRELTIQTSPVDCGAVEVTVSDTGPGL- 635

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE   Q+      +      +       +   +   +               +
Sbjct: 636 SPEAMKQLFQPFFTTKPTGMGLGLSLSKSIVEAHGGEIWATPNPSRGATFHFTI 689


>gi|110806192|ref|YP_689712.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 5 str. 8401]
 gi|110615740|gb|ABF04407.1| Sensor protein rcsC [Shigella flexneri 5 str. 8401]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|147528|gb|AAA24505.1| capsular sunthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|333001362|gb|EGK20930.1| sensor kinase protein rcsC [Shigella flexneri VA-6]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|302344035|ref|YP_003808564.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
 gi|301640648|gb|ADK85970.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
          Length = 838

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 66/243 (27%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           + +        M+ +  L S I HD  + +GAI    EL    L +     + ++ + ++
Sbjct: 452 LLERKLRQAQKMEAIGTLASGITHDFNNILGAIIGYAELCLWDLSDDSPLRQNLEQVLVA 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109
              A   ++ +             + LG + +     +       V             +
Sbjct: 512 GDRAKDLVQQILTFSRQAEQEKKALNLGPVIKESLKLMRATLPTTVELRQDISAEPCLVM 571

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT----------------ISVQDSKNENIFSLKI 153
               +  ++++NL   A  ++     +                      +      S+  
Sbjct: 572 ADPVQMQQVVMNLCTNAAHAIGDRPGMIQVTLKQLDVDRDRAASHPDLAAGRYLRLSVGD 631

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           NG     PE   +I D    +        +    V  +   +   +            S 
Sbjct: 632 NGRGI-APEHIEKIFDPYFTTKKPGQGTGLGLSTVHGIVKTHGGVINVYSEPGQGATFSI 690

Query: 212 LLE 214
            L 
Sbjct: 691 WLP 693


>gi|156740961|ref|YP_001431090.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156232289|gb|ABU57072.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 471

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           M+ ++   + +      + + + HD+ +P+  +    E L +  I       Q++     
Sbjct: 217 MSADLGRAIQARR---QMTADLAHDLRTPLSIMRGYTEGLRDGRINGSPRIYQIMHGEVE 273

Query: 59  SAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-- 107
                +  +RL                    +        +    +    ++V  +    
Sbjct: 274 HLQRLIDDLRLLSLADAGALSLNRRAVDPRALLERAALAHMVQVESRGPTIRVEASDSLP 333

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                +   A++L NL   A      G  V  + +      I  ++  G+     +    
Sbjct: 334 AVWVDTDRMAQVLNNLLANALRHTQEGEIVLAAREAENRRIIIDVRDTGSGIAPEDLPHI 393

Query: 164 FTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +   T +S     +       +   +   +            +  L 
Sbjct: 394 FERFYRADPARTRESGQSAGLGLAIAKAIVEAHGGSISVTSTVGIGTTFTITLP 447


>gi|21233072|ref|NP_638989.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66770012|ref|YP_244774.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21114924|gb|AAM42913.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66575344|gb|AAY50754.1| sensor histidine kinase [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 630

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 234 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKGLSVI 293

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                    +      LG  E V E    V +   
Sbjct: 294 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALGAQEPVAEGKDQVLQLHV 353

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++  NL   A    P  G++ ++V+      I S++ +G+     
Sbjct: 354 PPTPCLVLGDATRLQQVFWNLLSNAIKFTPAHGRIDVTVEHDDGHFIVSVRDSGDGIASE 413

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  D           +    V  L   +  ++             +  L 
Sbjct: 414 FLPHLFGRFRQADATTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 472


>gi|297565508|ref|YP_003684480.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296849957|gb|ADH62972.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 425

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSM-DLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A+N      S+  L      + + I H++ +P+  +   LE + +     E+ ++ RL 
Sbjct: 183 LARNFNRMAESLEKLETERKAMIADIAHELRTPLTIMQGRLEAIQDGVASLEMREIDRLH 242

Query: 57  SM-----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                          +      RL           +    +            ++Q+   
Sbjct: 243 HQTRLLSRLVEDLRTLSLADAGRLTLERRPLDLCAVVQHTVAGFQGQAQDKGIKLQLRLP 302

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              +++  +  ++   +      A A  P GG +T+ V+    E    +   G       
Sbjct: 303 SPPLEVEADPDRLTQIISNLLHNAVAHTPAGGTITVEVEARGKEVAVRVSDTGPGIPEEA 362

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                                  +    V  L   +   +  +           LL K
Sbjct: 363 LPRVFDRFFRAEASRSRQSGGSGLGLAIVKALVELHGGMVEAKNRSSGGAEFRFLLPK 420


>gi|157154824|ref|YP_001463571.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli E24377A]
 gi|157076854|gb|ABV16562.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E24377A]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNSDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|153004708|ref|YP_001379033.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028281|gb|ABS26049.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 501

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 70/226 (30%), Gaps = 17/226 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + +    A+  + + + H+I +P+  +  +LELL E    +     +       + 
Sbjct: 265 RERMVRADRFAAVGEIATGLAHEIKNPLAGLSGALELLAEDLSANPQHAEVVGEMRHQVQ 324

Query: 63  --------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
                    L F R       S D    L  +  +I           V     ++     
Sbjct: 325 RLTHTMESLLSFARPPKAKLRSTDVNATLEKVLFLIRQQRNGGVSEVVPELMPELPSVLA 384

Query: 111 LSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++ LN+ + A  ++     GK+T+  +      +  +   G      +   Q+ 
Sbjct: 385 DPSQLEQVFLNICLNACQAMGAQGGGKLTVRSRPGDGNVVVEIADTGPGI-PADLRAQVF 443

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  + + +       +  E+   +      +   V +  L+
Sbjct: 444 KPFFTTKREGNGLGLAISARIVAEHGGHIGYRCPPEGGTVFTVTLQ 489


>gi|147525|gb|AAA24503.1| capsule synthesis regulator component C [Escherichia coli]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|85859323|ref|YP_461525.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85722414|gb|ABC77357.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 576

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 65/215 (30%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLA------ 70
           + + + H+I +P+ AI  S+ +L  ++ ++    +L+++          FM+        
Sbjct: 345 MAAGLAHEIRNPLAAISGSIHMLKKDLKLDPTDERLMKIILRGKDQLENFMKDFLLLAKP 404

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                     +      L  +  + +    +                RE   ++ NL + 
Sbjct: 405 AAGEKEWMNLNALIDEILESLVYIPDWSENITVEKNYPEPSLLYANKREMQHVIWNLILN 464

Query: 126 AHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           A  ++P           + V + +      ++ +G      E   +I +    +      
Sbjct: 465 ALQAMPRGGRLHIRTTPVVVMNERQCVQLDIEDSGEGI-SREDMNRIFEPFFTTKERGTG 523

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +       +      +    L   L K
Sbjct: 524 LGLAVVGKIIENYSGTITITSEKEKGTRLRVCLPK 558


>gi|16125012|ref|NP_419576.1| sensory box histidine kinase FixL [Caulobacter crescentus CB15]
 gi|221233733|ref|YP_002516169.1| oxygen sensory histidine kinase FixL [Caulobacter crescentus
           NA1000]
 gi|13421994|gb|AAK22744.1| sensory box histidine kinase FixL [Caulobacter crescentus CB15]
 gi|220962905|gb|ACL94261.1| oxygen sensory histidine kinase FixL [Caulobacter crescentus
           NA1000]
          Length = 504

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 76/238 (31%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDE--VGIEDEVMQL 52
           + +     +    L A+  + S + H++  P+ AI N L     L+D      + +V   
Sbjct: 254 LQELQNELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLMDRGREADQAKVRDA 313

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSW 104
           I  ++  A+   + +     +     S   +  + ++IE+               V++  
Sbjct: 314 IDRAAAQALRAGEVIHRMRDFARRGASEREVESLSKLIEEASALALIGEKERQVDVRLKL 373

Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGN 156
             +  D+  +R    ++LLNL      ++             +    +  +  S+   G 
Sbjct: 374 DPKADDVFADRVQIQQVLLNLIRNGIDAMQAQEPRKRALLIRTGLTEEGWSEVSVADTGP 433

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   ++    + +      +       +   +  R+  E       +    L 
Sbjct: 434 GI-APEVLERLFQPFMTTKPQGMGVGLSISRSIIEAHGGRIWAEANPGGGALFRFTLP 490


>gi|332754864|gb|EGJ85229.1| sensor kinase protein rcsC [Shigella flexneri 4343-70]
 gi|333001721|gb|EGK21287.1| sensor kinase protein rcsC [Shigella flexneri K-218]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 70/240 (29%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+ + 
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTVM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|313902102|ref|ZP_07835513.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467620|gb|EFR63123.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 466

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 74/237 (31%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           +A      L S++    L     +   H++ +P+ AI  +L+LL          +   ++
Sbjct: 229 LASTFNQMLDSIETAYRLQQRFVADASHELRAPLTAILGNLDLLRRRPGLPPEEQARALE 288

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVS 103
             R  +      +  +         V  +I   D++ V+ +     +R+           
Sbjct: 289 EARSEAERLSRLVADLLSLARADAGVPLVIKPFDVDAVVLEAFQEARRLARGQELVLDPL 348

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                        ++LL L   A    P GG++T+ ++ + +   I ++   G       
Sbjct: 349 EPVHVPGDRDRIKQLLLILLDNAIKYTPAGGRITLGLRGAGDGGAILTVADTGVGIPPAD 408

Query: 161 -PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P  F +                +       +  +++  +  +        ++  L 
Sbjct: 409 LPHVFERFYRADPARSRDPGGTGLGLPIARWIVEQHQGHITIDSAPGRGTTVTVRLP 465


>gi|267996474|gb|ACY91359.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
          Length = 493

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 268 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 327

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 328 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 387

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 388 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 446

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 447 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 486


>gi|167039803|ref|YP_001662788.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|307724872|ref|YP_003904623.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|166854043|gb|ABY92452.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|307581933|gb|ADN55332.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
          Length = 451

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64
           L   + S I H++ +P+  + + +E + +   E    +L  L+     +           
Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGIWEPTHERLKSLNEEVLRLINIVKDLETLN 291

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 ++L      + + +  +    +        +    +             A++ +
Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRE 411

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +   +   +  E   +     +  + 
Sbjct: 412 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFTVKIP 450


>gi|95929257|ref|ZP_01312001.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134755|gb|EAT16410.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 709

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 80/218 (36%), Gaps = 14/218 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSMSAII 62
            S  L A+  + + I H+I +P+  I  + ++L +   ++        ++I L       
Sbjct: 481 HSKRLAAIGEMGASIAHEIRNPLAGIGGAAQMLLKSVKDNPRQVAILNEIIILVFRIENT 540

Query: 63  RLKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
             + +  A  +T        +  L  +    + +E+F  +  +     +           
Sbjct: 541 VNQMLDYARAWTPNQALITPMQLLKEVATEAETMENFKQISFKFSGDDSIAIPLDEDLIR 600

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++L NLF  +  ++P GG+++  VQ ++NE I S++ +G      E   ++      + I
Sbjct: 601 QVLWNLFKNSAEAMPDGGELSCHVQATQNELIVSIQDHGMGM-DDETIKKLFTPFFTTKI 659

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +K  +           +S    
Sbjct: 660 YGTGLGLPICQRIIEAHKGSIAIHSALGEGTTISLRFP 697


>gi|20808828|ref|NP_623999.1| sensory transduction histidine kinase [Thermoanaerobacter
           tengcongensis MB4]
 gi|20517479|gb|AAM25603.1| Sensory transduction histidine kinases [Thermoanaerobacter
           tengcongensis MB4]
          Length = 451

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64
           L   + S I H++ +P+  + + +E + +   E    +L  L+     +           
Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGIWEPTHERLKSLNEEVLRLINIVKDLETLN 291

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 ++L      + + +  +    +        +    +             A++ +
Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRE 411

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +   +   +  E   +     +  + 
Sbjct: 412 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFTVKIP 450


>gi|323494578|ref|ZP_08099682.1| osmolarity sensor protein [Vibrio brasiliensis LMG 20546]
 gi|323311181|gb|EGA64341.1| osmolarity sensor protein [Vibrio brasiliensis LMG 20546]
          Length = 435

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 68/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEDDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMD 279

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLFM 124
           +++     +     L  + +     E    V    ++  + +          + + NL +
Sbjct: 280 YLKPVNKQSFVAVDLNEIANDVASSEGGYEVQIETEMDPSIKDTLGSPIAIKRAVSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+             ++ NG      +    F     G+     +   +
Sbjct: 340 NAIRYGNGWIKVSTGATADNKLVWVCIEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   ++        + +     
Sbjct: 400 GLAIVKRIVSQHNGSVIVNNRSGGGLKVQLSFP 432


>gi|302341755|ref|YP_003806284.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301638368|gb|ADK83690.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 521

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 19/233 (8%), Positives = 67/233 (28%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +       + S  + A+  L + + H++ +P+  I  +  +L E     +  +   +   
Sbjct: 273 LQHREAVLIQSHKMRAVGTLTAGVAHELNNPLNNITITAHVLQEDYDSLDDAERREMIGD 332

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGE 107
                  +       L F R +      +D    L +   +  + I     ++++  +  
Sbjct: 333 VVAEANRARKIISNLLDFARESSSRIEPLDLPSLLRETIYLASNQIKLSGIKIELQASDN 392

Query: 108 KIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPE 162
              +  +  ++      +   ++         +V ++  D  +     +   G       
Sbjct: 393 LPRVHGDSQQLRQVFLNLILNAIDASAKGGKIQVMLAPADEPHYVAVKVIDFGAGIPEHI 452

Query: 163 KFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +         +      +       +  ++  R++           + +L 
Sbjct: 453 LPSVFDPFFTTKARYKGTGLGLSVSQGIVAKHGGRIMVYSQPGKGATFTVILP 505


>gi|239834826|ref|ZP_04683154.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
 gi|239822889|gb|EEQ94458.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
            3301]
          Length = 1158

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 29/239 (12%)

Query: 2    AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDE 48
                   L+   L         A L + I H++  P+ AI  +       L+ E    + 
Sbjct: 915  RAQEELRLTLEKLARASQASSLAELSASIAHEVNQPLAAIVANSHACQRWLMAEPPNTER 974

Query: 49   VMQLIRLSSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
             ++ +   +                 K   +A       D +  + D+         +  
Sbjct: 975  ALKTVERITRDATSAAEIVGRIRALFKQSFVAKKKIMLSDIISEVRDLMAEELTRWRIRT 1034

Query: 99   RVQV-SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKING 155
             V         +    +  +++LNL   A  ++        TI V   ++     +   G
Sbjct: 1035 VVDAADGLPFVMADKVQIQQVILNLIRNAVEAMETVSDRLLTIEVVRDEDVVRTKISDRG 1094

Query: 156  NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  E   ++ +  + +      +       +   +  RL  E  +     L   L 
Sbjct: 1095 VGISPTE---RMFEPFITTKEQGMGMGLAISRSIVEAHGGRLWAEKNEPQGTSLVFTLP 1150


>gi|71906719|ref|YP_284306.1| osmosensitive K+ channel signal transduction histidine kinase
           [Dechloromonas aromatica RCB]
 gi|71846340|gb|AAZ45836.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Osmosensitive K+ channel His kinase sensor
           [Dechloromonas aromatica RCB]
          Length = 902

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 66/232 (28%), Gaps = 18/232 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMS 59
           A+N    + S  L   + S I HD+ +P+  +    +   L +        ++       
Sbjct: 653 AQNTTVQMESERLRNSVLSAISHDLRTPMSVLVGLADSMFLTQPPPTGPQAEIAHSLKEE 712

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKI 109
           A+     +             + L    Q +E+ +            + ++ VS      
Sbjct: 713 ALRVSSQVNNLLDMAKLQSGRVELNRQWQPLEEVVVSALKTLERAFAEHQISVSLDENLP 772

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            ++ +     +++ NL        P G  V I    ++      ++ NG      +    
Sbjct: 773 LVNIDSVLMERVIYNLLENTVKYTPPGSLVEIGANVTERMIEVWVEDNGPGLPEGKEEII 832

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +   G  ES      +       +   +   +               L +
Sbjct: 833 FKKFERGQPESATRGVGLGLAICRAIVEAHGGEIYAVNRPQGGARFMFTLPR 884


>gi|56963601|ref|YP_175332.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56909844|dbj|BAD64371.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 598

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 59/235 (25%), Gaps = 22/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           +++        L     + + H++ +PI  +    E +         +   +   +    
Sbjct: 357 RDVTEERRHDKLRKDFIANVSHELRTPISMLQGYSEAMVDGVTSSDEERKEVAQIIYDES 416

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---QVIEDFIAVDKRVQVSWTGEKI- 109
                     L   R+  GY       + L              A +  V V        
Sbjct: 417 LRMGRLVNELLDLARMEAGYIDLNLEEVDLDSYLERITRKFASFAREYDVTVELAKPGRG 476

Query: 110 ----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++L NL   A      GG +T+  +  +  + F++   G      +   
Sbjct: 477 QIAVFDPDRIEQVLTNLIHNAIRHTNPGGLITVVHEQEEERDTFAVVDTGRGIPEEDLPY 536

Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +    +           +       +   ++ ++               L K
Sbjct: 537 VFERFYKADKARTRQHGGTGLGLAIAKHIIDAHQGKITVHSRLGEGTTFHFTLPK 591


>gi|16762284|ref|NP_457901.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29143772|ref|NP_807114.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213580344|ref|ZP_03362170.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
 gi|213855079|ref|ZP_03383319.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|20140997|sp|Q8Z332|ZRAS_SALTI RecName: Full=Sensor protein zraS
 gi|25512555|pir||AE0931 two-component system sensor protein STY3712 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504588|emb|CAD09471.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139407|gb|AAO70974.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 465

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|320160535|ref|YP_004173759.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
 gi|319994388|dbj|BAJ63159.1| putative two-component hybrid sensor and regulator [Anaerolinea
            thermophila UNI-1]
          Length = 1819

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 64/240 (26%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            +A      L +  L +   + + H+I +P+ A+    E+L +  + +E     R+   S 
Sbjct: 1138 LALARDQALEASRLKSEFLATMSHEIRTPLNAVIGMSEILLDTPLNEEQADFARIIRDSG 1197

Query: 61   IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                  +         +   +       V +  + +   +    
Sbjct: 1198 KSLLSIINDILDFSKIEAGRMTLESVEFQLLPLVDSVIEMFASIVQKKNLHLFGWIAPDV 1257

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE 162
                +       ++L+NL         +G         +  +NE I  ++++       E
Sbjct: 1258 PNIVVGDPVRLRQVLINLVGNGVKFTEQGHVSVSISLQERLENEVILRVEVHDTGIGLSE 1317

Query: 163  -KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALL 213
                ++          +        +       L       +  E ++        +  L
Sbjct: 1318 TARKRLFTPFTQADGSMTRRFGGTGLGLAISKSLVELMGGEIGVESVEGQGSTFWFTVTL 1377


>gi|301058125|ref|ZP_07199177.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300447757|gb|EFK11470.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 489

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 84/235 (35%), Gaps = 22/235 (9%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57
            + +   L  +  L AL  + + + H+I +P+G I ++ EL+       +   +L  L  
Sbjct: 255 QRELETQLDQAERLAALGQMVAGVSHEIRNPLGIIRSTAELMGSMSSGNESQAKLSGLIV 314

Query: 58  MSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +      +     +           D    L    Q ++  +   K +       +  
Sbjct: 315 EESSRLNNIVTEFLDFARPQTPNFQDCDLNEILHKNIQFLQRELETRKILLQDGLPHRSL 374

Query: 111 LSRERAKI----LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +   ++     LN+FM A  ++  GG ++ISV + ++  + +++ +G+     +   +
Sbjct: 375 PLKADPQLLYRSFLNIFMNALQAMEDGGTLSISVSEDEDYYVVAVQDDGSGIEEQDLK-K 433

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII------DDHNVVLSALLEK 215
           I D    +      +    V  +   +K  +  E        ++    +   L K
Sbjct: 434 IFDPFFSTKDKGSGLGLSIVRNIIEGHKGHIWIESHLEASAPEETGTSVFIQLPK 488


>gi|283853104|ref|ZP_06370359.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571502|gb|EFC19507.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 404

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 30/234 (12%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE-----------------VGIEDEVM 50
            +  +    +L + + H++ +P+ AI    E L                         ++
Sbjct: 165 QAEKMATIGMLATGVAHEVNNPLTAIFGFAEGLRRRLPALREKVDPGVMEDVEDYVSTIL 224

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTG 106
              R         L F R        V     + D  +++   +    +    V+V    
Sbjct: 225 LECRRCQDIVTTLLTFSRHKTVSFSPVSLNAVVEDTLKLLRSHLKQRNQAKITVRVDLCE 284

Query: 107 EKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +  +  +I   +  +   ++      G  V  + Q        S++ +G      E
Sbjct: 285 SLPKVLGDEHQIKQVMLNLLVNAMDAIAGPGRIVITTFQSVPESVCLSVEDSGYGI-RAE 343

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +        I     + +  ++   +  +       V +    
Sbjct: 344 HMDKLFEPFFTTKRAGKGIGIGLSTCMSIVQKHHGDITVKSQPGQGAVFTVKFP 397


>gi|269838055|ref|YP_003320283.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
 gi|269787318|gb|ACZ39461.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
          Length = 383

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 64/229 (27%), Gaps = 20/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
           N     +   L   + + + H++  P+  I    + L           +   ++ I  + 
Sbjct: 147 NRRLTDAQQQLQVFIAA-VTHELRQPLTTIVGYAQGLQRRIEPDLAEQDRRALEAIIEAV 205

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEK 108
                    +                 VD +  + ++ +         +  +        
Sbjct: 206 WRTRRITTDLHDAARLGVGEFKLQPAPVDLVAVVREVVEAQLVSGGQHRLHLDAPEQLTG 265

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                  A+++ NL   A    P GG+V  S+++     I ++   G      ++ T++ 
Sbjct: 266 CWDRERIAQVVANLIDNAVKYSPDGGEVRASLREEAGSAILTISDQGPGL-SDDQQTRLF 324

Query: 169 DGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +  +    +   +  R+  +   +     +  L 
Sbjct: 325 QPFSRVGETTLVGSGLGLFIAKGIVESHGGRIWVDSEPNRGSTFTVRLP 373


>gi|209765618|gb|ACI81121.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|242281024|ref|YP_002993153.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242123918|gb|ACS81614.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 481

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 77/220 (35%), Gaps = 15/220 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  +  +  L + I H+I +P+ A+    + L+ +  I+    + I++    A    + 
Sbjct: 259 QSERMATVGELSAYIAHEIRNPLMAMGGFAKVLIKDESIDAPGREKIQIILEEAQRLDRL 318

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKI 118
           ++    +  S D      D+ +V  D +          +  V++              ++
Sbjct: 319 LKSILSFVRSRDVEKNNIDVNRVAADAMQLLSLGCQLQEIEVEMDLDPFHPLGVGGAEQV 378

Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
              L      +  ++P GG++ IS   S       ++ +G      +  + + D    S 
Sbjct: 379 RQCLINLVKNSMEAMPEGGRLKISSGISGKHVWLEVRDSGPGI-SDDIRSHVFDPFYSSK 437

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++ + +    V  +  E    +           ++ LL K
Sbjct: 438 VNGNGLGLPMVKKIMEEFGGGVELASRPGKGTSVALLLRK 477


>gi|189466982|ref|ZP_03015767.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
 gi|189435246|gb|EDV04231.1| hypothetical protein BACINT_03364 [Bacteroides intestinalis DSM
           17393]
          Length = 712

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 53/227 (23%), Gaps = 15/227 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE----------VM 50
           + +       S  L +   + + H+I +P+ AI     LL E   ++             
Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAEADDDERESYMSLVEENNE 395

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L+ L S    I              VD      ++          +  V          
Sbjct: 396 LLLNLISDILDISKIEAGTVELTITRVDLPRLCREVISTCSHKKHEEAVVLCFDESSPQI 455

Query: 111 L----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         ++L N    A     +G        ++  +  F +   G      ++   
Sbjct: 456 MVDADKNRIMQVLSNFVTNALKFTTKGSVTLSYRLENDTQVRFCVTDTGKGIPAEQQHEI 515

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +      +       L       +  E  +         
Sbjct: 516 FNRFVKLDSFSQGAGLGLSICQSLVERMGGEIGVESREGEGSCFWFT 562


>gi|152966751|ref|YP_001362535.1| integral membrane sensor signal transduction histidine kinase
           [Kineococcus radiotolerans SRS30216]
 gi|151361268|gb|ABS04271.1| integral membrane sensor signal transduction histidine kinase
           [Kineococcus radiotolerans SRS30216]
          Length = 501

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 60/203 (29%), Gaps = 12/203 (5%)

Query: 24  HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYT 74
           H++ +P+  +   LELLD  +     +   L+          +  +       R  F   
Sbjct: 275 HELRTPLTIVQGHLELLDVDDPRDVTDTRDLVLDELSRMTRLVDDLTLLAKARRPDFVTL 334

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
            +V++   L D+   +        RV+           +   + +L L   A      G 
Sbjct: 335 QAVEAGRLLDDVYDKVVPLGERQWRVEERAEVTVQADGQRLTQAVLQLVSNAVKFTRPGD 394

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAH 191
            + +       E    ++ +G      +    F +         ++   +    V  +A 
Sbjct: 395 LIALGSAVRGGELHLRVRDSGPGIAAGDLDRIFERFGRAETGRGVEGSGLGLSIVTAIAE 454

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +  R+            + +L 
Sbjct: 455 AHGGRVDVSSAPGLGSSFAVVLP 477


>gi|260774546|ref|ZP_05883459.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260610452|gb|EEX35658.1| multi-sensor hybrid histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 999

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 63/226 (27%), Gaps = 25/226 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            + +   S + H++ +P+ +I  +L L+      +      ++++    ++      +  
Sbjct: 504 KMKSEFISTVSHELRTPLTSISGALGLIIGSRFEELPDKTQKLLKTAHRNNQRLSHLIND 563

Query: 67  MRLAF-------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRE 114
           +            +   +  L  L +            + V +    +         S+ 
Sbjct: 564 LLDIEKIAAGKLHFDMRLHELTLLVEQAIETNQHYGSSRDVSIRLICDANTVLVHVDSQR 623

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--- 171
             ++L NL   A       G+V + V     + I S+   G       +  +I       
Sbjct: 624 LLQVLANLLSNAIKFSSDHGQVIVEVTTDNGKAIVSVIDQGPGINQAFR-ERIFQRFAQA 682

Query: 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +       L      ++  E           +L 
Sbjct: 683 DSSDTRAKEGTGLGLAISRELIERMGGQIDFESTMGKGSRFFFVLP 728


>gi|229079164|ref|ZP_04211713.1| hypothetical protein bcere0023_18240 [Bacillus cereus Rock4-2]
 gi|228704181|gb|EEL56618.1| hypothetical protein bcere0023_18240 [Bacillus cereus Rock4-2]
          Length = 351

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346


>gi|228952361|ref|ZP_04114449.1| hypothetical protein bthur0006_17670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229043750|ref|ZP_04191452.1| hypothetical protein bcere0027_17960 [Bacillus cereus AH676]
 gi|229109449|ref|ZP_04239043.1| hypothetical protein bcere0018_17160 [Bacillus cereus Rock1-15]
 gi|228674016|gb|EEL29266.1| hypothetical protein bcere0018_17160 [Bacillus cereus Rock1-15]
 gi|228725603|gb|EEL76858.1| hypothetical protein bcere0027_17960 [Bacillus cereus AH676]
 gi|228807357|gb|EEM53888.1| hypothetical protein bthur0006_17670 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 351

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346


>gi|62180844|ref|YP_217261.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194444742|ref|YP_002041532.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|224583244|ref|YP_002637042.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|62128477|gb|AAX66180.1| sensory histidine kinase in two-component regulatory system with
           RcsB, regulates colanic capsule biosynthesis [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|194403405|gb|ACF63627.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|224467771|gb|ACN45601.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|322715320|gb|EFZ06891.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 948

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|320178808|gb|EFW53771.1| Two-component sensor protein RcsC [Shigella boydii ATCC 9905]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|229135508|ref|ZP_04264294.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196]
 gi|228647973|gb|EEL04022.1| hypothetical protein bcere0014_44020 [Bacillus cereus BDRD-ST196]
          Length = 484

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 66/242 (27%), Gaps = 27/242 (11%)

Query: 1   MAK----NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           M K    +I       +    L S I HD+ +PI +I   +E + +         D+ + 
Sbjct: 237 MRKKLKGSIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLT 296

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------- 104
            I   +      +  + L      +            V    +  + ++ +S        
Sbjct: 297 TIHTKAKHMDTLIDELFLFSKLDLNRVPFQFETIELNVFMQELLEEMQMDLSEGGIEVYL 356

Query: 105 -----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLA 158
                         +  +++ NL   +   + +  K       S N   I  +  NG+  
Sbjct: 357 QLHSSPLYVTADCEKINRVISNLIHNSVKYMDKEAKKITVTVLSDNNKVIVKVMDNGSGI 416

Query: 159 RF---PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P  F +                +       +  E+   +  E        +   L
Sbjct: 417 EADTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGEIWAESKLGEGTSIFFSL 476

Query: 214 EK 215
           +K
Sbjct: 477 KK 478


>gi|229139294|ref|ZP_04267866.1| hypothetical protein bcere0013_24040 [Bacillus cereus BDRD-ST26]
 gi|229196828|ref|ZP_04323569.1| hypothetical protein bcere0001_23830 [Bacillus cereus m1293]
 gi|228586551|gb|EEK44628.1| hypothetical protein bcere0001_23830 [Bacillus cereus m1293]
 gi|228644150|gb|EEL00410.1| hypothetical protein bcere0013_24040 [Bacillus cereus BDRD-ST26]
          Length = 413

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++    +  M++V+ L + I H++ +P+  +    +LL                +++ + 
Sbjct: 183 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 242

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112
            +       L F + A      +     L  +  +I     ++         T   +   
Sbjct: 243 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 302

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 303 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 361

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 362 STKTKGTGLGTMVAVKIIETMQGNLKIRSVMNKGTTLTITFPK 404


>gi|224368654|ref|YP_002602816.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
 gi|223691370|gb|ACN14653.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
          Length = 405

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 32/235 (13%)

Query: 11  SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV------------------GIEDEVM 50
           S  +    LL + + H+I +P+ +I    E L                        +E +
Sbjct: 164 SKKMATVGLLAAGVAHEINNPLTSISGFSEGLKRRLPRLKSCLENNPENFELMADFNEYI 223

Query: 51  QLIRLSSMSAIIRLKFMRLAFGY----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           + I          +K +             VD    + D+  ++   +     +++    
Sbjct: 224 ETIIAECNRCHDIVKSLLTFSPRKKIVFIPVDLKNLINDVLTLLRYRLKNFPLLRIDLEF 283

Query: 107 EKIDLSRERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +       +++LN+   A  ++   G++ I  + +      S+K NG+    P
Sbjct: 284 NTDIPKVQGNAAELKQVMLNIICNALDAIDPDGRIQIYAKKANQWVTLSVKDNGSGI-TP 342

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ D    +        +       +  +++  ++    ++   V      
Sbjct: 343 ETMDRMFDPFFTTKPVDKGTGVGLSTCYNIIKQHRGEIVVNSKENIGSVFKIKFP 397


>gi|206974118|ref|ZP_03235036.1| sporulation kinase B [Bacillus cereus H3081.97]
 gi|217960104|ref|YP_002338662.1| sporulation kinase B [Bacillus cereus AH187]
 gi|206748274|gb|EDZ59663.1| sporulation kinase B [Bacillus cereus H3081.97]
 gi|217063913|gb|ACJ78163.1| sporulation kinase B [Bacillus cereus AH187]
          Length = 422

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++    +  M++V+ L + I H++ +P+  +    +LL                +++ + 
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112
            +       L F + A      +     L  +  +I     ++         T   +   
Sbjct: 252 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGNLKIRSVMNKGTTLTITFPK 413


>gi|121728449|ref|ZP_01681475.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
 gi|121629273|gb|EAX61708.1| sensor histidine kinase/response regulator [Vibrio cholerae V52]
          Length = 406

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 59/246 (23%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + K +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 21  LQKLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGESTSYQV 80

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 81  ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWLDLEKKLDQSLVYHRQIAQDKGV 140

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               +   + T E    S    +IL N+   A     +G    +          F +K  
Sbjct: 141 HFYVQSNKNPTLEYYTDSARLTQILFNIVGNAIKFTKQGQVDVVLDYTKDGVV-FRVKDT 199

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  E        
Sbjct: 200 GIGIEKNRV-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTIQVESEFGIGTT 258

Query: 209 LSALLE 214
            +  + 
Sbjct: 259 FTLYIP 264


>gi|332093154|gb|EGI98214.1| sensor kinase protein rcsC [Shigella boydii 5216-82]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|329962237|ref|ZP_08300243.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328530345|gb|EGF57222.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1326

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 59/215 (27%), Gaps = 19/215 (8%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            + I H+  +P+  I + +E L + G     ++           + + +         ++ 
Sbjct: 805  ANISHEFRTPLTLIISQIEALLQSGNHSPFLRTRLQKIYKNTFQFRELISELLDFRKMER 864

Query: 80   LIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRERAKILLNLF 123
                  + Q+          +  +                         R+  K+  NL 
Sbjct: 865  GKLQLHVCQLDIVAYLKQIHLDFTDQAQLQNIHFDFQTDAESLMCWYDGRQLRKVFSNLL 924

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHD 180
              A    P  GKV + + + +      +   G        P  F +    +   +     
Sbjct: 925  SNAFKHTPEKGKVELQIHEKETTVEIKVIDTGEGIPQEALPYIFDRFYQVDTAVSSPGSG 984

Query: 181  IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I       +   +  ++  +    +  + +  L K
Sbjct: 985  IGLALSKGVVELHHGKISVQSALQYGTIFTVTLPK 1019


>gi|302340321|ref|YP_003805527.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637506|gb|ADK82933.1| integral membrane sensor hybrid histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 862

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 62/250 (24%), Gaps = 37/250 (14%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           M K     L      A        +  + + H+I +P+ AI    E+L+    +    + 
Sbjct: 354 MRKRSERELRRAKNEAESANRTKTIFLANMSHEIRTPMNAILGFTEILEAEERDPRRRKY 413

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--- 109
           I   + S    L  +      +      I L      I   +   + +      +K    
Sbjct: 414 IEAINSSGTTLLAIINDLLDLSKVEADKIVLKPEPTDITSLMEELRYIYAPLAEKKHLIL 473

Query: 110 -------------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN------ENIFS 150
                               +IL+NL   A      GG   +     ++      +    
Sbjct: 474 DVEIATATPEALLIDRTRLRQILVNLVGNAIKFTTVGGVRIVINTWKQSEESTSVDLRID 533

Query: 151 LKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           +  +G      +   +I           +       +       L+      +       
Sbjct: 534 VADSGPGIAVSD-QERIFGIFEQGEVAWDRKYGGTGLGLAISRRLSTLMGGTISLTSSPG 592

Query: 205 HNVVLSALLE 214
              + S  L 
Sbjct: 593 EGAIFSIELP 602


>gi|296118917|ref|ZP_06837490.1| sensor histidine kinase [Corynebacterium ammoniagenes DSM 20306]
 gi|295968015|gb|EFG81267.1| sensor histidine kinase [Corynebacterium ammoniagenes DSM 20306]
          Length = 507

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 56/208 (26%), Gaps = 16/208 (7%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            H++ +P+ ++    EL      +D  M   ++   SS  + +    + L       +D 
Sbjct: 237 SHELRTPLTSLRGYTELYRSGITDDVDMVLSKIDAESSRMSYLVEDLLALTRAEGTRLDI 296

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------IDLSRERAKILLNLFMVAHASLP 131
                    +     A       +                +    +I+LNL         
Sbjct: 297 RPVDVLELSLSVASSARAAFTDRTINVSNDTLGVPVVYGDASRLHQIILNLITNGIRHGG 356

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN--VESTIDSHDIQFYYV 186
              ++TI ++   ++ +  +   G           F +    +           +    V
Sbjct: 357 DEAEITIGLERDGDDVLIKVIDTGRGMDPEVSAHIFERFYREDTSRTRDTGGSGLGLAIV 416

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214
             L  ++   +  E         +  L 
Sbjct: 417 KSLVEQHGGSIDVESELGVGSTFTVRLP 444


>gi|228958874|ref|ZP_04120580.1| hypothetical protein bthur0005_23720 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228800811|gb|EEM47722.1| hypothetical protein bthur0005_23720 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 360

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 11/225 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQL 52
           + ++    +  M++V+ L + I H++ +P+  +    +LL                +++ 
Sbjct: 131 LMRSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEE 190

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKID 110
           +  +       L F + A      +     L  +  +I     ++             + 
Sbjct: 191 LNRAQEIIDDYLTFAKPAPEKLDQISVKQELNRVINMILPLCNMNTIHITQDFSEATIVG 250

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   +  LNL   +  ++P GG + IS   + ++    ++ +G      E+  +  + 
Sbjct: 251 NKQHFQQCFLNLIKNSIEAMPNGGTLNISSSINNSKVEIRIEDSGVGM-SQEQIHRFGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      +     + +       L    I      L     K
Sbjct: 310 YFSTKTKGTGLGTMVAVKIIETMHGSLKIRSIVSKGTTLMITFPK 354


>gi|229145708|ref|ZP_04274089.1| hypothetical protein bcere0012_28590 [Bacillus cereus BDRD-ST24]
 gi|228637689|gb|EEK94138.1| hypothetical protein bcere0012_28590 [Bacillus cereus BDRD-ST24]
          Length = 801

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 56/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + +I     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIISSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    I  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNMSVLMDQVLMLLQPQAIMNNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQINILDNNQVSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  +   +    +   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIKSEMNKGTTVEVTLP 795


>gi|207859351|ref|YP_002246002.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|206711154|emb|CAR35528.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 465

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPNRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|194364225|ref|YP_002026835.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
 gi|194347029|gb|ACF50152.1| PAS/PAC sensor hybrid histidine kinase [Stenotrophomonas
           maltophilia R551-3]
          Length = 662

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----L 52
           +        ++ ++  L     + + H++ +P+  I    ELL +       +      +
Sbjct: 260 LQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLGVI 319

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------- 101
              +     +    + L+    G V   + + D+  V+ + I   + V            
Sbjct: 320 ANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLCGVLGEAIGAQELVAEGKALDVHLQL 379

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++  NL   A    P  G++ +++Q   N  + +++  G+     
Sbjct: 380 PDRPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVALQADGNHWVITVRDTGDGIAPE 439

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +   +        H    +  L 
Sbjct: 440 FLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHGHGATFTVRLP 498


>gi|56480068|ref|NP_708113.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 301]
 gi|56383619|gb|AAN43820.2| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 301]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|307824660|ref|ZP_07654884.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307734314|gb|EFO05167.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 929

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 61/236 (25%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      ++    +   SR+ H++ +P+ AI    +LL+        +           
Sbjct: 552 AKEEADRANNAK--SEFLSRMSHELRTPMNAIMGFAQLLETDRETPITLDQADNVREIRH 609

Query: 62  IRLKFMRLAFGYTGSVDSLI-----------------GLGDIEQVIEDFIAVDKRVQVSW 104
                + L                                 + Q +     ++ ++ +  
Sbjct: 610 AGQHLLELINEVLDLARIETGRIELSLEPVEVPLLIGECMALLQPLTLGRRIELKLDIDG 669

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163
           TG          +ILLNL   A       G V I+ Q         ++  +G      + 
Sbjct: 670 TGTVQADRLRLRQILLNLLSNAIKYNRDRGNVHITCQPVAAGRIRIAVCDSGRGIAV-DA 728

Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T++             I+   I       L       +  E +          L 
Sbjct: 729 MTRLFKPFERIESAYDGIEGTGIGLALSKRLVEAMGGTIGVESVVGAGSTFWVELP 784


>gi|301164155|emb|CBW23711.1| putative two-component system, sensor kinase [Bacteroides fragilis
           638R]
          Length = 543

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +L+ +    +E  + IR+ + + 
Sbjct: 301 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 360

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105
            + L+ +               ++ +   +  L +   +          VQ+ +T     
Sbjct: 361 ELLLQLIDDILDLSKIEAGTMDFSYAPTDINELMEDICLQMQQKNQRPEVQIMFTEKESG 420

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                     +++++NL   A      G           K+E  F +K  G      +  
Sbjct: 421 CVINTDRLRLSQVIMNLMNNAMKFTSEGSITLGYRLTRQKDELYFFVKDTGIGIPADQAG 480

Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + I    +      ++       +  E  +         L 
Sbjct: 481 KVFERFVKLNTFIKGTGLGLAICRVIIERLGGTIGVETREGKGACFWFRLP 531


>gi|282899742|ref|ZP_06307705.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195357|gb|EFA70291.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 407

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 78/243 (32%), Gaps = 29/243 (11%)

Query: 2   AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDEVG-------IEDE 48
            +     L ++ L       +   S I H++ +P+ AI    ++L             D 
Sbjct: 154 RQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSSVQTDM 213

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------DK 98
           + +++  +   +++  + +  +   +G +     + D+ +++   +              
Sbjct: 214 LKRILNNAKDLSMLLNEVLDFSKIDSGRLGLKAEIFDLSKMVNHTVDEIRSLVEAKKLSL 273

Query: 99  RVQVSWTGE-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            V++        +      +IL+NL   A     RG       + SK+    S++  G  
Sbjct: 274 SVEIDLENTLVFNDPVRVRQILINLLSNAIKFTERGCVWVRVTETSKSRIAISIRDTGIG 333

Query: 158 ARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +        + VD  +        +    +  L      +++ E       + +  
Sbjct: 334 ISNQDCEHIFEAFRQVDQGMSRKYPGTGLGLAIIDSLVKIMGGKIMLESQLAVGSLFTVE 393

Query: 213 LEK 215
           L +
Sbjct: 394 LPR 396


>gi|12516556|gb|AAG57353.1|AE005454_1 sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Escherichia coli O157:H7 str. EDL933]
 gi|13362576|dbj|BAB36530.1| sensor for ctr capsule biosynthesis [Escherichia coli O157:H7 str.
           Sakai]
 gi|209765620|gb|ACI81122.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765622|gb|ACI81123.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765624|gb|ACI81124.1| sensor for ctr capsule biosynthesis [Escherichia coli]
 gi|209765626|gb|ACI81125.1| sensor for ctr capsule biosynthesis [Escherichia coli]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLMIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|326942456|gb|AEA18352.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 483

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
            +      +  + L      +                 +  + ++ +S  G         
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHS 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSLEK 478


>gi|298387314|ref|ZP_06996867.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
 gi|298259983|gb|EFI02854.1| two-component system sensor protein [Bacteroides sp. 1_1_14]
          Length = 538

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 66/231 (28%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +++ + G E+E  + +++ S + 
Sbjct: 303 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDMICQTGEEEEKQEYMKIVSSNN 362

Query: 61  IIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
            + L+ +      +               +  L +              V +++      
Sbjct: 363 ELLLQLIDDILDLSKIEAGTMEFTLAPTDINDLMEGICRQMQEKNTSPDVAITFTEKAEE 422

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A    P+G        D   +   F +K  G      +  
Sbjct: 423 CILNTDRVRLSQVIINFTNNAMKFTPKGSIQMGYRIDEAKDEIYFYVKDTGIGIPADKIN 482

Query: 165 TQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +      +      ++       +  +  +         L 
Sbjct: 483 EVFERFVKLNTFAKGTGLGLAICRVIVERLGGTIGADSKEGKGSCFWFRLP 533


>gi|283138911|gb|ADB12514.1| putative two-component sensor [uncultured bacterium 9F08]
          Length = 912

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 42/250 (16%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------------- 50
                S  L +L  L + + H+I +PIG I  +L  L+        +             
Sbjct: 652 EQMQQSEKLASLGMLAAGVAHEINNPIGYIRANLNTLERHMASLFQLLDRDETARPPHSS 711

Query: 51  ------------------------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI 86
                                   + +R   +                  +   +     
Sbjct: 712 QSPIDPDYLRRDIGELLQETSEGVERVRNIVIDLKELSHPAGEDAWQLADLHKGLNSTLN 771

Query: 87  EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE 146
               E     +   Q         L  +  ++ LNL + A  ++ + G + I       E
Sbjct: 772 IARSELKHKAEVVCQFGELPLVQCLPGQLNQVFLNLLVNAAQAIEQRGVIVIRTGQQGEE 831

Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD 204
               +   G          ++ +    +        I       +  ++  R+  +  + 
Sbjct: 832 VWIEVSDTGKGIPPQHLK-RLFEPFFTTKPVGQGTGIGLPLSHRIVEKHHGRIEVDSEEG 890

Query: 205 HNVVLSALLE 214
                   L 
Sbjct: 891 IGSRFRVWLP 900


>gi|242242764|ref|ZP_04797209.1| histidine kinase [Staphylococcus epidermidis W23144]
 gi|242233900|gb|EES36212.1| histidine kinase [Staphylococcus epidermidis W23144]
          Length = 586

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 55/218 (25%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          + + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVARMD 423

Query: 74  -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNL 122
                           L  +E                 +               ++L NL
Sbjct: 424 AEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYDMDRMDQVLTNL 483

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177
              A      G  + IS+++  + NI ++   G           F +    +        
Sbjct: 484 IDNATRYTQAGDSIKISIEEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKRGKQ 543

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   ++   +  R+  E            L K
Sbjct: 544 GTGLGLFICKMIIEAHGGRIDVESELGKGTSFIIRLPK 581


>gi|228941850|ref|ZP_04104397.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974775|ref|ZP_04135341.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228785178|gb|EEM33191.1| hypothetical protein bthur0003_45280 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818062|gb|EEM64140.1| hypothetical protein bthur0008_44860 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 484

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 241 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
            +      +  + L      +                 +  + ++ +S  G         
Sbjct: 301 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHS 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSLEK 478


>gi|228981370|ref|ZP_04141670.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407]
 gi|228778570|gb|EEM26837.1| hypothetical protein bthur0002_45310 [Bacillus thuringiensis Bt407]
          Length = 485

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I       +    L S I HD+ +PI +I   +E + +         D+ +  I  
Sbjct: 242 LKESIEVQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 301

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
            +      +  + L      +                 +  + ++ +S  G         
Sbjct: 302 KAKHMDTLIDELFLFSKLDLNRVPFQFETVELNTFMQELIEEMQMDLSEEGIEVNLQLHS 361

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 362 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 421

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 422 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIVEEHGGGIWAESELGKGTSIFFSLEK 479


>gi|196041818|ref|ZP_03109107.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196027312|gb|EDX65930.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 463

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ + VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIVEKVNAMYKERYITVSFSCPPTLLVNLDEQRFEQVVM 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+       ++ ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSQIHISVIEENKRISITMEDEGEGMPPEDLPHIFERFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|157161702|ref|YP_001459020.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli HS]
 gi|170019468|ref|YP_001724422.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ATCC 8739]
 gi|157067382|gb|ABV06637.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           HS]
 gi|169754396|gb|ACA77095.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           ATCC 8739]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|134292637|ref|YP_001116373.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135794|gb|ABO56908.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 1021

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 65/245 (26%), Gaps = 33/245 (13%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +   + + D       + L +   H+I +P+  I  +LELL+   ++      +R 
Sbjct: 486 LVQQLEEAVRAADSANAAKSSFLAAT-SHEIRTPLNVILGNLELLERTALDASQQSRVRT 544

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              SA   L  +     ++      + +  IE  +   I                     
Sbjct: 545 LRASAEGLLAIVSDILDFSKIEAGAMSVESIEFELIAVIEQQLAAFAPIAKAKGLPLFVE 604

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKING 155
           +  S            A++L NL   A      G                E   S++  G
Sbjct: 605 IDASVEQRMRGDPTRLAQVLGNLLSNAIKFTSEGHIAARVAVWPDARGVPEVELSVEDTG 664

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 ++  ++          +        +       L       L  E       V 
Sbjct: 665 IGIEPTQR-ARLFKPFSQVDASITRRYGGTGLGLALCDRLVTAMGGTLSVESTPQVGSVF 723

Query: 210 SALLE 214
           S  L 
Sbjct: 724 SVHLP 728


>gi|324326625|gb|ADY21885.1| sporulation kinase B [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 422

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 75/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++    +  M++V+ L + I H++ +P+  +    +LL                +++ + 
Sbjct: 192 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDEYIKHILEELH 251

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLS 112
            +       L F + A      +     L  +  +I     ++         T   +   
Sbjct: 252 HAQGIIDDYLTFAKPASEKLDEISVEQELNRVINMILPLCNMNTIHITKDFSTATIVGNK 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL      ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 312 QHFQQCFLNLLKNGIEAMPNGGTLNISSSISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 370

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    + +    L+    K
Sbjct: 371 STKTKGTGLGTMVAVKIIETMQGNLKIRSVINKGTTLTITFPK 413


>gi|261210565|ref|ZP_05924858.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio sp. RC341]
 gi|260840350|gb|EEX66921.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio sp. RC341]
          Length = 597

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 68/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103
           I + +       + ++     + S +          +          +  +   +  +V 
Sbjct: 418 ISVLTERMAKISEQLKSFARKSTSNEQQEVQLYPLILSAKELMTAQFKAQMTQLELCEVD 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +    S  +    +  NG      
Sbjct: 478 TLVWVRVNPIQLEQVLINLLTNALQALEGQAERIVQIRLHISPQQIQLYVDDNGPGIGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    + +    +  +   +       + H  +  L              +L +
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGELSVATSPLGGARFMIILPR 590


>gi|229005877|ref|ZP_04163571.1| hypothetical protein bmyco0002_28010 [Bacillus mycoides Rock1-4]
 gi|228755341|gb|EEM04692.1| hypothetical protein bmyco0002_28010 [Bacillus mycoides Rock1-4]
          Length = 513

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52
           + K       S  L     L + I H+I +P+ A+   L LL     E        ++  
Sbjct: 275 LKKTEKLLRKSEKLAVVGQLTAGIAHEIRNPLTALKGFLTLLQPDISEQNKWYIDVMLSE 334

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       S      + ++   ++   I     + +       ++
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIHSHQIQSLIEEVVTFILPTAIMHSTHIIMDHLSTMPEI 394

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
             +  ++          A  ++PRGG + I  +   +N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINVLKNAIEAMPRGGNIFIQTKQVDENFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHYGKLQISSELNKGTTVDIRLP 500


>gi|206977533|ref|ZP_03238427.1| sporulation kinase B [Bacillus cereus H3081.97]
 gi|217958915|ref|YP_002337463.1| sporulation kinase B [Bacillus cereus AH187]
 gi|222095072|ref|YP_002529132.1| sporulation kinase b [Bacillus cereus Q1]
 gi|229138125|ref|ZP_04266723.1| hypothetical protein bcere0013_12490 [Bacillus cereus BDRD-ST26]
 gi|229195635|ref|ZP_04322401.1| hypothetical protein bcere0001_12020 [Bacillus cereus m1293]
 gi|206744251|gb|EDZ55664.1| sporulation kinase B [Bacillus cereus H3081.97]
 gi|217065461|gb|ACJ79711.1| sporulation kinase B [Bacillus cereus AH187]
 gi|221239130|gb|ACM11840.1| sporulation kinase b [Bacillus cereus Q1]
 gi|228587884|gb|EEK45936.1| hypothetical protein bcere0001_12020 [Bacillus cereus m1293]
 gi|228645470|gb|EEL01704.1| hypothetical protein bcere0013_12490 [Bacillus cereus BDRD-ST26]
          Length = 402

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSGTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|161613012|ref|YP_001586977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161362376|gb|ABX66144.1| hypothetical protein SPAB_00718 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 948

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|37679285|ref|NP_933894.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus YJ016]
 gi|37198028|dbj|BAC93865.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus YJ016]
          Length = 605

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L     + + I H++ +P+ AI +  +   L  E      V + +  
Sbjct: 367 LRLTQDELIQAAKLAVIGQMSASISHELNNPLAAIRSFADNGRLFLEKEKYPRVDENLSR 426

Query: 56  SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S       K  +    +                + L   E +     +   +++  +  
Sbjct: 427 ISALTERMAKISQQLRSFARKSAGDELVEARLMPVLLSANELMKPSLKSARVQLETDFPE 486

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160
             I L     ++   L      A  ++       + +      + +    +  NG     
Sbjct: 487 YDIHLVINTIQLEQVLINLITNAIEAMENTEAKQLRITVDRALEQQICVHIDDNGPGI-D 545

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P KF Q+ +    +  +   +       +      +L            +  L 
Sbjct: 546 PAKFAQLCEPFHTTKTNGLGLGLSISQQILAGMNGKLQVSHSPLGGARFTITLP 599


>gi|16765598|ref|NP_461213.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167549739|ref|ZP_02343498.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992601|ref|ZP_02573698.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168242383|ref|ZP_02667315.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168261719|ref|ZP_02683692.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194449775|ref|YP_002046325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|200387073|ref|ZP_03213685.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|20139412|sp|P58662|RCSC_SALTY RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|16420809|gb|AAL21172.1| sensory histidine kinase in two-component regulatory system with
           RcsB [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|194408079|gb|ACF68298.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|199604171|gb|EDZ02716.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205325492|gb|EDZ13331.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329183|gb|EDZ15947.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205338298|gb|EDZ25062.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205349323|gb|EDZ35954.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|229918798|gb|ACQ91083.1| RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str.
           SL1344]
 gi|261247479|emb|CBG25306.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267994357|gb|ACY89242.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301158829|emb|CBW18342.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913261|dbj|BAJ37235.1| hybrid two-component sensor kinase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321223029|gb|EFX48100.1| Two-component sensor protein RcsC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130601|gb|ADX18031.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332989204|gb|AEF08187.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 948

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|293405685|ref|ZP_06649677.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298381367|ref|ZP_06990966.1| two-component system [Escherichia coli FVEC1302]
 gi|291427893|gb|EFF00920.1| hybrid sensory kinase [Escherichia coli FVEC1412]
 gi|298278809|gb|EFI20323.1| two-component system [Escherichia coli FVEC1302]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|331663724|ref|ZP_08364634.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
 gi|284922210|emb|CBG35292.1| two-component system sensor kinase [Escherichia coli 042]
 gi|331059523|gb|EGI31500.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA143]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|194436320|ref|ZP_03068422.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253772858|ref|YP_003035689.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|194425048|gb|EDX41033.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           101-1]
 gi|253323902|gb|ACT28504.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|323961524|gb|EGB57132.1| RcsC Alpha-Beta-Loop [Escherichia coli H489]
 gi|323973081|gb|EGB68275.1| RcsC Alpha-Beta-Loop [Escherichia coli TA007]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|188493885|ref|ZP_03001155.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
 gi|188489084|gb|EDU64187.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           53638]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|161986500|ref|YP_311159.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sonnei Ss046]
 gi|191165347|ref|ZP_03027189.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|193062260|ref|ZP_03043355.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|193068180|ref|ZP_03049144.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194427111|ref|ZP_03059662.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|293415518|ref|ZP_06658161.1| two-component system [Escherichia coli B185]
 gi|293446568|ref|ZP_06662990.1| two-component system [Escherichia coli B088]
 gi|307311208|ref|ZP_07590852.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|331668924|ref|ZP_08369772.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331678173|ref|ZP_08378848.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
 gi|190904510|gb|EDV64217.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B7A]
 gi|192931926|gb|EDV84525.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E22]
 gi|192958459|gb|EDV88898.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           E110019]
 gi|194414732|gb|EDX31003.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           B171]
 gi|291323398|gb|EFE62826.1| two-component system [Escherichia coli B088]
 gi|291433166|gb|EFF06145.1| two-component system [Escherichia coli B185]
 gi|306908714|gb|EFN39211.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           W]
 gi|315061526|gb|ADT75853.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RcsD [Escherichia coli W]
 gi|320199813|gb|EFW74402.1| Two-component sensor protein RcsC [Escherichia coli EC4100B]
 gi|323161685|gb|EFZ47568.1| sensor kinase protein rcsC [Escherichia coli E128010]
 gi|323168624|gb|EFZ54304.1| sensor kinase protein rcsC [Shigella sonnei 53G]
 gi|323184157|gb|EFZ69534.1| sensor kinase protein rcsC [Escherichia coli 1357]
 gi|323377894|gb|ADX50162.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           KO11]
 gi|323945034|gb|EGB41099.1| RcsC Alpha-Beta-Loop [Escherichia coli H120]
 gi|324117892|gb|EGC11791.1| RcsC Alpha-Beta-Loop [Escherichia coli E1167]
 gi|331064118|gb|EGI36029.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA271]
 gi|331074633|gb|EGI45953.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H591]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|110642428|ref|YP_670158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 536]
 gi|191170203|ref|ZP_03031757.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|306814668|ref|ZP_07448830.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
 gi|110344020|gb|ABG70257.1| sensor protein RcsC [Escherichia coli 536]
 gi|190909719|gb|EDV69304.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           F11]
 gi|305852062|gb|EFM52514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli NC101]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|39997578|ref|NP_953529.1| sensor histidine kinase KdpD [Geobacter sulfurreducens PCA]
 gi|39984470|gb|AAR35856.1| sensor histidine kinase KdpD [Geobacter sulfurreducens PCA]
          Length = 885

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 68/233 (29%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57
           A+      +  +L  ALL S I HD+ +P+ AI  +L+ L +      ++  ++L+  + 
Sbjct: 641 AEQAQILQARENLERALLNS-ISHDLRTPLVAITGALDTLRDKVHTLADESRLELLDTAW 699

Query: 58  MSAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             A    +F+      T                  +    +  +          V+++  
Sbjct: 700 EEAERLNRFVGNLLDMTRLESGAIKLKRELSDVQDLIGCALAALERRIGERGIDVRLAPD 759

Query: 106 GE-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       ++L+NL   A    P    V I+ +         +   G      +  
Sbjct: 760 LPLVRIDMVLMTQVLVNLLDNALKYSPPDSGVEITARVDGGRLRIEMADRGPGIPEQDLK 819

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +     V        +       +   +   +  E      + +   L 
Sbjct: 820 RVFDKFYRIAVPEGAQGTGLGLSICKGIVEAHGGSIRAENRTGGGLRVIVTLP 872


>gi|328861215|gb|EGG10319.1| hypothetical protein MELLADRAFT_115560 [Melampsora larici-populina
           98AG31]
          Length = 1004

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 64/247 (25%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRI--------CHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K   + + +  L A   + +         H++ +P+ ++    +LL    + DE    +
Sbjct: 440 TKRRLWKVKAQKLAAEGAADLKQNFISVASHELRTPLFSVTGYADLLGRTDLNDEQKLYL 499

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                +       +     ++    +          +     V+   +++    +   +R
Sbjct: 500 ANMQQACANMQLIIANVLDFSKLERNNEESNAKPVCMNLRAMVEGIGRMTEDKGRSVRAR 559

Query: 114 ERA---------------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
                                   +I +NL   A     +G  +     +   E +  ++
Sbjct: 560 SVDLIVHVSAIVPETALVDETFVLRICMNLLSNALKFTEKGFILISLDMNEPEELVIKVQ 619

Query: 153 INGNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G       +       +  D +         +       L      ++  + I+    
Sbjct: 620 DTGIGIPRSFRKDLFEPYRQADSSTTRPHQGTGLGLSICKQLVQRLDGKIEVDSIEGEGT 679

Query: 208 VLSALLE 214
                L 
Sbjct: 680 TFVVTLP 686


>gi|320196090|gb|EFW70714.1| Two-component sensor protein RcsC [Escherichia coli WV_060327]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|319400834|gb|EFV89053.1| sensor protein srrB [Staphylococcus epidermidis FRI909]
          Length = 586

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 55/218 (25%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          + + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVARMD 423

Query: 74  -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNL 122
                           L  +E                 +               ++L NL
Sbjct: 424 AEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYDMDRMDQVLTNL 483

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID-- 177
              A      G  + IS+ +  + NI ++   G           F +    +        
Sbjct: 484 IDNATRYTQAGDSIKISIDEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKRGKQ 543

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   ++  E+  R+  E            L K
Sbjct: 544 GTGLGLFICKMIIEEHGGRIDVESELGKGTSFIIRLPK 581


>gi|325110166|ref|YP_004271234.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
 gi|324970434|gb|ADY61212.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
           5305]
          Length = 1273

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      ++    +   + + H+I +P+  +   L+LL E   + +  + + ++  SA
Sbjct: 595 LRQQKEMAEAANKAKSSFLATMSHEIRTPLNGVIGMLDLLCETDTDQQQGRYVSIAKNSA 654

Query: 61  IIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110
              L  +     ++                   +E V + F        +  +   +   
Sbjct: 655 ESLLCLINDILDFSKIEAGKLELSPSEFNLPTLVEDVSDMFAHRAASKGLELSCHILPEV 714

Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160
                  S    +IL+NL   A      G           +D +    F ++  G     
Sbjct: 715 ASRVLGDSERLRQILINLIGNAIKFTEVGEIRINVAATSTRDHEQWVRFEVQDTGVGI-P 773

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++                   +       LA     ++  +         S  + 
Sbjct: 774 EDIQQRLFQPFEQADASTTRKFGGTGLGLAICRELAILMGGKITVDSQLGSGATFSLEIP 833


>gi|312973528|ref|ZP_07787700.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
 gi|310332123|gb|EFP99358.1| sensor kinase protein rcsC [Escherichia coli 1827-70]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|331683895|ref|ZP_08384491.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
 gi|331078847|gb|EGI50049.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H299]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|302343347|ref|YP_003807876.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301639960|gb|ADK85282.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 489

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 79/229 (34%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           A+ +     S  L +L  + + + H+I +P+G I ++ ELL           L  +    
Sbjct: 258 AQLLEQLNQSERLASLGRMIAGVAHEIRNPLGIIRSTAELLGSRADSASK-PLAGVIVEE 316

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +    + +     +       +           ++  +  +   +   VQ  +  + + +
Sbjct: 317 SNRLNQIVTEFLDFARPQRPNLTPVFLDEVLGRNLLVLEPEIKRLGIVVQRDFKAQPLIV 376

Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164
             +     +  LN+F  A  ++ +GG++ +S     +      + S+  +G     PE  
Sbjct: 377 VGDADLLYRAFLNIFNNAVQAMEQGGELRVSTFVEAHDGVDWGVVSVDDSGPGI-DPEAR 435

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +I++    +      +    V  +   +  +L  E        +   L
Sbjct: 436 AKILEPFFTTKEKGTGLGLSIVNSIVASHGGKLSIESSPLGGARIKVRL 484


>gi|293410582|ref|ZP_06654158.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
 gi|291471050|gb|EFF13534.1| hypothetical protein ECEG_01547 [Escherichia coli B354]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|260868935|ref|YP_003235337.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
 gi|257765291|dbj|BAI36786.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O111:H- str. 11128]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|256017614|ref|ZP_05431479.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella sp. D9]
 gi|332278624|ref|ZP_08391037.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
 gi|332100976|gb|EGJ04322.1| hybrid sensory kinase in two-component system response regulatory
           system with RcsB and YojN [Shigella sp. D9]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|229097174|ref|ZP_04228136.1| hypothetical protein bcere0020_24170 [Bacillus cereus Rock3-29]
 gi|229116164|ref|ZP_04245555.1| hypothetical protein bcere0017_24530 [Bacillus cereus Rock1-3]
 gi|228667281|gb|EEL22732.1| hypothetical protein bcere0017_24530 [Bacillus cereus Rock1-3]
 gi|228685985|gb|EEL39901.1| hypothetical protein bcere0020_24170 [Bacillus cereus Rock3-29]
          Length = 433

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++    +  M++V+ L + I H++ +P+  +    +LL          DE ++ I     
Sbjct: 208 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLSPESRDEYIEHILEELN 267

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSR 113
            A   +                I +          ++         +   ++   I  ++
Sbjct: 268 RAQEIIDDYLTFAKPAPEKLDHISIDQELNRAINMILPLCNMNTIHITKDFSKANIVGNK 327

Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  +    NL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 328 QHFQQCFLNLIKNSIEAMPNGGTLNISSTISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 386

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +       L  +        L+    K
Sbjct: 387 STKSKGTGLGTMVAVKIIETMHGNLKIQSTVSKGTALTITFPK 429


>gi|225569869|ref|ZP_03778894.1| hypothetical protein CLOHYLEM_05963 [Clostridium hylemonae DSM
           15053]
 gi|225161339|gb|EEG73958.1| hypothetical protein CLOHYLEM_05963 [Clostridium hylemonae DSM
           15053]
          Length = 508

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 69/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           +  N    +        L S I HD+ +P+ AI    E + +      E M     +  +
Sbjct: 262 LKDNAEEKVKYDKESKELISNISHDLKTPVTAIKGYAEGIMDGVADTPEKMDKYIRTIYN 321

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------ 113
               +  +         +D+     +   +  +    D    +S   E  ++        
Sbjct: 322 KANEMDLLINELTLYSKIDTNRIPYNFNTLSVNEYFNDCAEDLSLEMESKNVEFGYFNYV 381

Query: 114 -----------ERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFP 161
                      +  +++ N+   +   + +        V+D  +     ++ NG      
Sbjct: 382 ASGVQVIADAEQIKRVIHNIVNNSLKYMDKSKGKINLRVKDVGDFIQVEVEDNGKGIAAK 441

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  E+  ++     ++    +  +L K
Sbjct: 442 DLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSREETGTTMYFVLRK 500


>gi|218705748|ref|YP_002413267.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300897715|ref|ZP_07116112.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|218432845|emb|CAR13739.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UMN026]
 gi|300358555|gb|EFJ74425.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|218700687|ref|YP_002408316.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
 gi|218370673|emb|CAR18482.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI39]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|170767641|ref|ZP_02902094.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
 gi|170123975|gb|EDS92906.1| sensor histidine kinase/response regulator RcsC [Escherichia
           albertii TW07627]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRVEGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|161984916|ref|YP_408495.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii Sb227]
 gi|320185893|gb|EFW60643.1| Two-component sensor protein RcsC [Shigella flexneri CDC 796-83]
 gi|332093693|gb|EGI98751.1| sensor kinase protein rcsC [Shigella boydii 3594-74]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|153807682|ref|ZP_01960350.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185]
 gi|149130044|gb|EDM21256.1| hypothetical protein BACCAC_01964 [Bacteroides caccae ATCC 43185]
          Length = 631

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           + +     +  L +   + + H+I +P+ AI     +L EV   +E+ +   +   +  +
Sbjct: 400 EAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPEVDDREEMREYTDIIETNTNL 459

Query: 63  R-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107
                                    +D    + +IEQ ++  +  D       +      
Sbjct: 460 LLQLINDILDMSKIEAGTFDFCPALIDVNQTMEEIEQSMQLRLKNDAVTFTFCERLPECM 519

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L N  + A      G           N   F +   G     PE+   +
Sbjct: 520 LYIDKNRLMQLLSNFIVNAIKFTKSGSIRMGYRMKDINTIYFYVSDTGCGM-SPEQCRHV 578

Query: 168 VDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +        I    +      ++    K  +     +         L 
Sbjct: 579 FERFVKYNPFIQGTGLGLSICHMIVEHLKGEIGVNSEEGKGSTFWFTLP 627


>gi|117624412|ref|YP_853325.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli APEC O1]
 gi|115513536|gb|ABJ01611.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and RojN [Escherichia coli APEC O1]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|91211512|ref|YP_541498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UTI89]
 gi|237704693|ref|ZP_04535174.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|91073086|gb|ABE07967.1| sensor protein RcsC [Escherichia coli UTI89]
 gi|226901059|gb|EEH87318.1| sensor protein RcsC [Escherichia sp. 3_2_53FAA]
 gi|294492820|gb|ADE91576.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           IHE3034]
 gi|323952012|gb|EGB47886.1| RcsC Alpha-Beta-Loop [Escherichia coli H252]
 gi|323955986|gb|EGB51739.1| RcsC Alpha-Beta-Loop [Escherichia coli H263]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|333002945|gb|EGK22501.1| sensor kinase protein rcsC [Shigella flexneri K-272]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|30063657|ref|NP_837828.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella flexneri 2a str. 2457T]
 gi|30041910|gb|AAP17637.1| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Shigella flexneri 2a str. 2457T]
 gi|281601668|gb|ADA74652.1| Integral membrane sensor hybrid histidine kinase precursor
           [Shigella flexneri 2002017]
 gi|313651334|gb|EFS15732.1| sensor kinase protein rcsC [Shigella flexneri 2a str. 2457T]
 gi|333016630|gb|EGK35959.1| sensor kinase protein rcsC [Shigella flexneri K-304]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|26248607|ref|NP_754647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli CFT073]
 gi|227887276|ref|ZP_04005081.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|312967520|ref|ZP_07781735.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331647873|ref|ZP_08348965.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331658298|ref|ZP_08359260.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
 gi|26109012|gb|AAN81215.1|AE016763_174 Sensor protein rcsC [Escherichia coli CFT073]
 gi|227835626|gb|EEJ46092.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 83972]
 gi|307554285|gb|ADN47060.1| capsular synthesis regulator component C [Escherichia coli ABU
           83972]
 gi|312287717|gb|EFR15622.1| sensor kinase protein rcsC [Escherichia coli 2362-75]
 gi|331043597|gb|EGI15735.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M605]
 gi|331056546|gb|EGI28555.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli TA206]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|145698285|ref|NP_416722.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|170081838|ref|YP_001731158.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238901393|ref|YP_002927189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|256022099|ref|ZP_05435964.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia sp. 4_1_40B]
 gi|301024240|ref|ZP_07187935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|17433741|sp|P14376|RCSC_ECOLI RecName: Full=Sensor kinase protein RcsC; AltName: Full=Capsular
           synthesis regulator component C
 gi|145693157|gb|AAC75278.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. MG1655]
 gi|169889673|gb|ACB03380.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. DH10B]
 gi|238861443|gb|ACR63441.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BW2952]
 gi|260448688|gb|ACX39110.1| histidine kinase [Escherichia coli DH1]
 gi|299880503|gb|EFI88714.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|323936833|gb|EGB33118.1| RcsC Alpha-Beta-Loop [Escherichia coli E1520]
 gi|323941087|gb|EGB37274.1| RcsC Alpha-Beta-Loop [Escherichia coli E482]
 gi|332344000|gb|AEE57334.1| sensor kinase RcsC [Escherichia coli UMNK88]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|241764934|ref|ZP_04762934.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
            delafieldii 2AN]
 gi|241365496|gb|EER60261.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
            delafieldii 2AN]
          Length = 1425

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 56/236 (23%), Gaps = 22/236 (9%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + ++      +    +   + + H++ +P+ +I    EL++    +  + +   L    A
Sbjct: 1176 LTQSEAEAQRANQAKSEFLAAMSHELRTPLTSIRGFAELMELRSKDPLIQEQSALIRQGA 1235

Query: 61   IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
                  +                +   V     + ++ ++               V  + 
Sbjct: 1236 EHLNALLTEILDLARIEAGAMPAHPEPVVLHDLVHEVSELFRVSAVAKSLALTAAVSDAA 1295

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEK 163
                +    +  +IL NL   A    P G            ++  F +   G        
Sbjct: 1296 PQTLVTDRLKLKQILSNLLSNAIKFTPAGRVEIFVDACPDGSQVHFHVNDTGPGIPASLH 1355

Query: 164  FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +        +       LA      L            +  L 
Sbjct: 1356 GVIFEKFSQGHARISYQHGGTGLGLSLSRALAELLGGTLTVRSAVGEGSTFTLSLP 1411



 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+++    S     +   + I H++ +P+ +I    EL    G + E +  +     +A 
Sbjct: 593 ARDLAEEASRSK--SEFVANISHELRTPLQSILGFSELGMLRGRQHEKLAAMFSDIHAAG 650

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------------T 105
            R+  +         ++S +G    E++    +  D   ++                   
Sbjct: 651 QRMLVLVNDLLDIAKIESTVGAFHFERIDVRDLIDDVAAEMELLLGRKRLDLRLALGRAP 710

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPE-- 162
                      +++ N+   A    P+G  + IS      +     +   G      E  
Sbjct: 711 LIAKVDPSRFQQVVRNVLANAVKFSPKGSAIDISASTPDDDFIHIQVCDQGPGIPPSELE 770

Query: 163 -KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F   V  +          +       +   +  R+    +     +   +L 
Sbjct: 771 AVFEAFVQSSQTRDGSGGTGLGLAICRKIITAHGGRINATNVPGGGAMFHIVLP 824


>gi|261420032|ref|YP_003253714.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|297530007|ref|YP_003671282.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|319766846|ref|YP_004132347.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
 gi|261376489|gb|ACX79232.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC61]
 gi|297253259|gb|ADI26705.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|317111712|gb|ADU94204.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y412MC52]
          Length = 434

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 74/223 (33%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           +        M+ V  L + I H+I +P+ A    ++L++E  +  +  +           
Sbjct: 192 RKRVIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELD 251

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLS 112
            +  I   ++  A     + + L    +IE+VI+    +     V           I   
Sbjct: 252 RAEAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGER 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  + LLN+   A  ++P GG + + V       +  +   G      E+  ++ +   
Sbjct: 312 EKFRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGM-TKEQLERLGEPYF 370

Query: 173 EST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +    +    V  +       +  E        +S  L 
Sbjct: 371 TTKGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLP 413


>gi|254434207|ref|ZP_05047715.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
 gi|207090540|gb|EDZ67811.1| response regulator receiver domain protein [Nitrosococcus oceani
           AFC27]
          Length = 1240

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     L S  +     + + H+I +P+  +   LELL  +G+  +  + ++ +  S 
Sbjct: 259 LEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGLNPKQREYVQAACNSG 318

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +     +   +   +      Q     + +   V  + 
Sbjct: 319 ETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKELELGYVVLDNV 378

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
                  S    +IL+NL   A     RG           +  K    F ++  G     
Sbjct: 379 PLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKAEKLVLHFEVRDTGIGIPV 438

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ +                 +       L       +  E       +      
Sbjct: 439 -EFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSGKGSIFWFTAP 497


>gi|145299988|ref|YP_001142829.1| two-component system sensor histidine kinase [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852760|gb|ABO91081.1| two-component system sensor histidine kinase [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 719

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     L S  L AL  LC+ + H I +P+  I  ++EL+            E + L+
Sbjct: 440 LTQARQQLLISEKLAALGELCAGVAHVINNPLAVILGNVELMKLELGEAAAPVSEELALV 499

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 500 LAQIERIRAITRSLLQYSRPGDYETAPVWQHLTPIIEESLTLVRSALRQQQVNLVADLQA 559

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLA 158
                   ++  ++L+NL + A  +L   G++ +  +D  +E          +  NG+  
Sbjct: 560 QQPIEADRQQLLQVLINLLVNASHALGEQGEIRVESRDWFDEAGGLQGAEVRVIDNGSGI 619

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +I D    +      +       +       LL           +  L
Sbjct: 620 DAA-IMDKIFDPFFTTRATGTGLGLALSHRIISRWGGELLVASTLGKGSCFTIRL 673


>gi|77164777|ref|YP_343302.1| hybrid signal transduction histidine kinase and diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
 gi|76883091|gb|ABA57772.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus oceani ATCC
           19707]
          Length = 1499

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     L S  +     + + H+I +P+  +   LELL  +G+  +  + ++ +  S 
Sbjct: 259 LEKARDAALESARIKGEFAANVSHEIRTPLNGVIGILELLKNMGLNPKQREYVQAACNSG 318

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +     +   +   +      Q     + +   V  + 
Sbjct: 319 ETLLELIGNILDFSRIESGKFKLDPINFHLQEILDDVIGLLAAQAQRKELELGYVVLDNV 378

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
                  S    +IL+NL   A     RG           +  K    F ++  G     
Sbjct: 379 PLSLRGDSARIRQILINLMANAVKFTDRGEVSIEVSLLEKKAEKLVLHFEVRDTGIGIPV 438

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ +                 +       L       +  E       +      
Sbjct: 439 -EFRARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDIGVESGSGKGSIFWFTAP 497


>gi|309792564|ref|ZP_07687026.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308225378|gb|EFO79144.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 792

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 66/233 (28%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV--MQLIRLS 56
            ++    + S  L AL    + I H+  + +G +    +L L       +   ++++  +
Sbjct: 423 QESQAELIQSSKLAALGTFAAGIAHEFNNLLGGMLGYAQLGLSSPDDTTKNESLKVVVDT 482

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
                     +            +  L D  +       +      +    ++      I
Sbjct: 483 CKRGKSITGSLLTFARRGEPRREMADLSDAVRGTVTLMEIELRKHQISIVQKIEPVPLTI 542

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               + ++++LN    A  ++   G  +T+ +   +     S+   G          +I+
Sbjct: 543 CDPGQISQVVLNFLTNARDAMKPAGGTLTVRLSSDEQRITLSISDTGCGI-PDAIRDKIL 601

Query: 169 DGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  V +             +       +   +   L  E        +   L 
Sbjct: 602 EPFVTTKGALGGSTTPGTGLGLSVSYGIVQSHGGTLEVESSPGQGTTMIMHLP 654


>gi|226227421|ref|YP_002761527.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27]
 gi|226090612|dbj|BAH39057.1| two-component histidine kinase [Gemmatimonas aurantiaca T-27]
          Length = 500

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 29/238 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRL 55
           I     +  L AL  L + + H+I +P+  I    E +              E++++I L
Sbjct: 257 IDRTAQAEKLAALGQLAAGVMHEINNPLATIAACAESMSLQQELGPGAAPPTELLRIIDL 316

Query: 56  SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                       L F R        VD    +     +++      +   V+   E+  +
Sbjct: 317 EVQRCKKIVNGLLDFSRPKTAGKERVDLNAVVQQGLFLLQHHPRFKRVKLVTELEERTPM 376

Query: 112 SRERA-----KILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLA 158
             +       ++L+ L M A  + P               +         F +   G   
Sbjct: 377 IVDADADQLVQVLIALAMNALDATPEGGRVTIRTHMLAEGTDTHPGPCAAFEVADEGPGI 436

Query: 159 RFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++ +    +        +       +  ++   L     +         L 
Sbjct: 437 -PRALHAKVFEPFFTTKPPGQGTGLGLAICYGIVRDHGGALDLVSSEGVGATFRVALP 493


>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 958

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +  + +   + + H++ +P+ AI    ELL      +E  + +     S 
Sbjct: 324 LRKATAEARQASRMKSEFLANMSHEMRTPMNAILGFTELLLSEETNEEKRKHLVTIYRSG 383

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSW 104
              L  +      +      + + +      +                 + +   +  + 
Sbjct: 384 EHLLSLINDVLDLSKIESGKMQIYEEIYSPRNLLKELVETYLPMAYSKGLHLAYSLDNNV 443

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +  +    +IL NL           G +TI     + +  + +   G      EK 
Sbjct: 444 PEYVVGDAFRIKQILTNLVSNGIKFTS-QGYITIQANYKEGKITYIVNDTGIGI-PEEKL 501

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +        +        +       L      +L  E        +   L 
Sbjct: 502 DKIFEPFTQLDRTMSRKYGGMGLGLAITKKLVDLMNGKLYIESHIGKGTKVVVSLP 557


>gi|331653653|ref|ZP_08354654.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
 gi|331048502|gb|EGI20578.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli M718]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|228907708|ref|ZP_04071564.1| hypothetical protein bthur0013_18740 [Bacillus thuringiensis IBL
           200]
 gi|228851941|gb|EEM96739.1| hypothetical protein bthur0013_18740 [Bacillus thuringiensis IBL
           200]
          Length = 351

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +               +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG + I +++ +      ++ +G      +    
Sbjct: 234 HVIADQESMSQVWINLIHNSIKFTPSGGTIIIQLKEHETVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   +   +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346


>gi|229144601|ref|ZP_04273003.1| hypothetical protein bcere0012_17610 [Bacillus cereus BDRD-ST24]
 gi|228638841|gb|EEK95269.1| hypothetical protein bcere0012_17610 [Bacillus cereus BDRD-ST24]
          Length = 351

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 346


>gi|229188857|ref|ZP_04315890.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876]
 gi|228594562|gb|EEK52348.1| hypothetical protein bcere0002_5480 [Bacillus cereus ATCC 10876]
          Length = 463

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53
           + +  +L  M    +   + + H++ +P+  +    ++  +     E             
Sbjct: 222 QTLANDLHYMKTERSEFLASVAHELRTPLTYVRGYADIASKESTPSEQRLRYLSIIKDES 281

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEK-- 108
              +          ++           + L           + I  ++ ++VS++     
Sbjct: 282 DYITNLVQDLFSLAQMEQHNFSIQVKEVHLHTFLTRIAEKVNAIYKERYIKVSFSCPPTL 341

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   ++++N+   A+        + ISV +       +++  G      +    
Sbjct: 342 LVNLDEQRFEQVVVNILNNAYRHSKEHSHINISVTEEHKSISITIEDEGEGIPPEDLPHI 401

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +     +    V  +   +   +      D+       L 
Sbjct: 402 FDRFYRVDKARSRSTGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIVSLP 454


>gi|218885320|ref|YP_002434641.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756274|gb|ACL07173.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 722

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
           + +  +L  +  L A+  L + + H+I +P+ A+    +     L     ++   Q +  
Sbjct: 383 RELEKSLSEAEKLAAVGTLAAGVAHEIRNPLSALRGFAQYFAKKLAGKQPDENYAQTMVR 442

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGEKI 109
            +      +  +             + LG +   +E  +  D                 +
Sbjct: 443 EADRLNRVITDLLYLARPRAIEPREVSLGQLAAELESLVRFDAGKLGVHMRTSLGPDLVM 502

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLARFP 161
                  + LLNL + +  +L +  +          IS   S       ++  G      
Sbjct: 503 ADEDALKQALLNLVLNSLDALAQCPQPAAGVGREIHISSMASDGGVWVFVRDTGPGM-SR 561

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+  Q  +    +      +    V     ++  R   +        ++    
Sbjct: 562 EQREQAFEPFYTTKKKGTGLGLALVHKTMRDHGGRAQIDSEVGRGTTVALFFP 614


>gi|77361752|ref|YP_341327.1| osmolarity sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76876663|emb|CAI87885.1| sensory histidine kinase (phosphorylase) in two-component
           regulatory system with OmpR, regulates ompF and ompC
           expression, senses osmolarity (OmpR family)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 433

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 58/204 (28%), Gaps = 6/204 (2%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           LL + + HD+ +P+  I  + E++ +      E  +  +  ++ +               
Sbjct: 227 LLMAGVSHDLRTPLTRIRLATEMMADEDDYLREGIIYDIEDMNGIIDQFIEYLRHHKREE 286

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
               D    + ++         V         G     +    +++ N+   A       
Sbjct: 287 LSCEDINALVAEVVHTELKHQRVITFKGNPSIGNIPISAVAIKRVITNMIENALRYSEGD 346

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLA 190
            +V      +K   + ++  +G      E    F     G+     +   +    +  + 
Sbjct: 347 IEVLCYFNSNKKYVVIAVNDSGPGIPEGELESVFEPFKQGDTARGSEGSGLGLAIIKRII 406

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +  ++      +  +     L 
Sbjct: 407 DMHDGKVKLSNRPEGGLSAQIYLP 430


>gi|312829880|emb|CBX34722.1| sensor protein srrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|329727652|gb|EGG64108.1| sensor protein SrrB [Staphylococcus aureus subsp. aureus 21172]
          Length = 564

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 346 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMD 405

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 406 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 465

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 466 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 525

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 526 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 562


>gi|303246319|ref|ZP_07332599.1| histidine kinase [Desulfovibrio fructosovorans JJ]
 gi|302492382|gb|EFL52254.1| histidine kinase [Desulfovibrio fructosovorans JJ]
          Length = 822

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 74/231 (32%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +       +  LVA+  L + + H+I +P+G I    ELL +   + + +  + +    
Sbjct: 584 RRMREQMRQTEKLVAVGKLAAGLAHEINNPLGVIACYAELLRQNETDPQALDDLAVIERH 643

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDL 111
           AI+  K +R    +     +  G  DI  +             A   R++ +        
Sbjct: 644 AIMAKKVLRDLLDFARPRQASTGPCDIAALLKSLSRLFEVQAQARKVRLETTIDDNLPVA 703

Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKFT 165
             +     ++L NL + A  ++                 +     +  NG      +   
Sbjct: 704 RADASALEQVLSNLLLNALDAVSPETGEVRIAARPGPDDDSVSILVSDNGPGIPPQDLT- 762

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +        +    V  L  +   R+  E  D    V + +L 
Sbjct: 763 RIFDPFFTTKEAGRGSGLGLAVVFGLLRDMGGRVEVENAD--GAVFTVILP 811


>gi|300918613|ref|ZP_07135201.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300414265|gb|EFJ97575.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|300866501|ref|ZP_07111191.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300335458|emb|CBN56351.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 795

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +N+   L +  L +   S + H++ +P+ AI    ELL          Q I +       
Sbjct: 559 QNLQL-LEAARLKSHFLSTVSHELRTPMNAIIGFSELLLRQRQPPINSQQIDMVQRILKN 617

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------------ 104
               + L            G  ++E    D   +     + +                  
Sbjct: 618 GKNLLMLINNILDLSRIEAGRTELEIEEFDLTNLVLCTALDFGIIANEKILSMSVYIYLD 677

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161
               ++      ++L+NL   A     RG       + S ++ +  ++  G      + P
Sbjct: 678 NPCIVNDKSRLRQVLVNLLSNAVKFTERGSIYIHVSELSADKLLIEIRDTGIGIAETQIP 737

Query: 162 EKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +    +           +       L +  K ++  E            L +
Sbjct: 738 HIFEKFRQVDQTTKRKYPGTGLGLAITASLVNLMKGKIKVESEVGKGSSFRLELPR 793


>gi|270296316|ref|ZP_06202516.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
 gi|270273720|gb|EFA19582.1| two-component system sensor histidine kinase [Bacteroides sp. D20]
          Length = 1037

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN      S  L +   + + H+I +P+ AI     +L     E+E  + + +   +  
Sbjct: 665 AKNRAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNNT 722

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105
           +                          +    + ++E ++   ++ +K V +S+      
Sbjct: 723 LLLQLISDILDLSKIEAGTMEFIDTDFELNKVMRELESLLCLKLSPEKNVTLSFEPGLPE 782

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A      G               F +   G      +K  
Sbjct: 783 CHIHSERNRLSQLVINLVTNAIKFTQEGSIRFGYKLQDDKMLYFYVSDTGCGI-PEDKQE 841

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I    V   +      +      +L       +               L 
Sbjct: 842 SIFGRFVKLNNFAQGTGLGLSICQMLVQHMGGNIGLTSKPGEGSTFWFTLP 892


>gi|229156703|ref|ZP_04284790.1| hypothetical protein bcere0010_28880 [Bacillus cereus ATCC 4342]
 gi|228626623|gb|EEK83363.1| hypothetical protein bcere0010_28880 [Bacillus cereus ATCC 4342]
          Length = 801

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLP 795


>gi|162449407|ref|YP_001611774.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159989|emb|CAN91294.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 469

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 58/230 (25%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
               + + M L A   L   + HD+ +P+GAI      L      +   Q        ++
Sbjct: 206 REARDAARMALAARDELMGIVAHDLRNPLGAIALKAAWLRRGADSERTRQQAESIEHVSL 265

Query: 62  IRLK---------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +               F      +         +     + E      ++       
Sbjct: 266 RMERLIRTMLDVTTMQASRFSVTPKPFAVEDLLHETMETFGPLSESKQVRFEQSLKEPGL 325

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L NL   A    P+ G+V +SV        F++  +G         + 
Sbjct: 326 VIRAEWERVLQVLSNLLGNALKFTPKSGQVILSVDRDGAMARFAVLDSGPGIPPQNLTSI 385

Query: 167 I--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +         +  Y    +   +  R+  E            L 
Sbjct: 386 FERFWKDETPGKKGTGLGLYIAKGIVDAHGGRIWVESEVGQGARFYFTLP 435


>gi|254162230|ref|YP_003045338.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|300931436|ref|ZP_07146765.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|242377854|emb|CAQ32621.1| RcsC sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253974131|gb|ACT39802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli B str. REL606]
 gi|253978298|gb|ACT43968.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli BL21(DE3)]
 gi|300460806|gb|EFK24299.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|78223890|ref|YP_385637.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195145|gb|ABB32912.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 589

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 60/222 (27%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------SSMSAIIRLKFM---- 67
             + + H++ +P+  I    E L +  +E +  +  +        S      +  +    
Sbjct: 368 FVANVSHELRTPVTVIKGYAEALIDGAMETDPERARKFVGIILSHSERLAALIGDLLTLS 427

Query: 68  -----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSRERAKIL 119
                 +    T      +    +E +          +  S        +       ++L
Sbjct: 428 QLEAGSMNLEKTTVRPEQVAKRAMELLQPKAARKGITIDCSGLSGAQSVLADPGRLEQVL 487

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A    P GG ++ S    +N     +K  G      +   +I +          
Sbjct: 488 VNLLDNAIKYTPEGGAISFSAAVKENMVRIGVKDTGVGIPPKDLP-RIFERFYRVDTARS 546

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    V  +   +   +  E            ++K
Sbjct: 547 RDEGGTGLGLSIVKHIVQLHGGAVGVESEPGKGSEFWFTIKK 588


>gi|15924481|ref|NP_372015.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15927072|ref|NP_374605.1| respiratory response protein SrrB [Staphylococcus aureus subsp.
           aureus N315]
 gi|156979810|ref|YP_001442069.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|13701290|dbj|BAB42584.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus subsp. aureus N315]
 gi|14247262|dbj|BAB57653.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|156721945|dbj|BAF78362.1| staphylococcal respiratory response protein [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|285817172|gb|ADC37659.1| Staphylococcal respiratory response protein SrrB [Staphylococcus
           aureus 04-02981]
          Length = 588

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 370 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMD 429

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 430 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 489

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 490 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 549

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 550 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 586


>gi|218554787|ref|YP_002387700.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|218695831|ref|YP_002403498.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|260844821|ref|YP_003222599.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300818176|ref|ZP_07098388.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300822674|ref|ZP_07102812.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300926329|ref|ZP_07142129.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|301328715|ref|ZP_07221768.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|309793104|ref|ZP_07687532.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|73856217|gb|AAZ88924.1| sensor for ctr capsule biosynthesis [Shigella sonnei Ss046]
 gi|218352563|emb|CAU98342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli 55989]
 gi|218361555|emb|CAQ99146.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli IAI1]
 gi|257759968|dbj|BAI31465.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O103:H2 str. 12009]
 gi|300417606|gb|EFK00917.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300524874|gb|EFK45943.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300529320|gb|EFK50382.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300844863|gb|EFK72623.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|308123390|gb|EFO60652.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|323171896|gb|EFZ57540.1| sensor kinase protein rcsC [Escherichia coli LT-68]
 gi|323176864|gb|EFZ62454.1| sensor kinase protein rcsC [Escherichia coli 1180]
 gi|324020897|gb|EGB90116.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|148267975|ref|YP_001246918.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394040|ref|YP_001316715.1| histidine kinase [Staphylococcus aureus subsp. aureus JH1]
 gi|253314859|ref|ZP_04838072.1| histidine kinase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255006277|ref|ZP_05144878.2| histidine kinase [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793568|ref|ZP_05642547.1| sensor protein srrB [Staphylococcus aureus A9781]
 gi|258407190|ref|ZP_05680338.1| sensor protein srrB [Staphylococcus aureus A9763]
 gi|258420274|ref|ZP_05683222.1| sensor protein srrB [Staphylococcus aureus A9719]
 gi|258437322|ref|ZP_05689306.1| sensor protein srrB [Staphylococcus aureus A9299]
 gi|258443527|ref|ZP_05691866.1| sensor protein srrB [Staphylococcus aureus A8115]
 gi|258446734|ref|ZP_05694888.1| sensor protein srrB [Staphylococcus aureus A6300]
 gi|258448649|ref|ZP_05696761.1| sensor protein srrB [Staphylococcus aureus A6224]
 gi|258454265|ref|ZP_05702235.1| sensor protein srrB [Staphylococcus aureus A5937]
 gi|269203118|ref|YP_003282387.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282892990|ref|ZP_06301224.1| sensor protein srrB [Staphylococcus aureus A8117]
 gi|282928961|ref|ZP_06336548.1| sensor protein srrB [Staphylococcus aureus A10102]
 gi|295406611|ref|ZP_06816416.1| sensor protein srrB [Staphylococcus aureus A8819]
 gi|296276359|ref|ZP_06858866.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297245805|ref|ZP_06929670.1| sensor protein srrB [Staphylococcus aureus A8796]
 gi|76363426|sp|Q99TZ9|SRRB_STAAM RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|76363427|sp|Q7A5H7|SRRB_STAAN RecName: Full=Sensor protein srrB; AltName: Full=Staphylococcal
           respiratory response protein B
 gi|147741044|gb|ABQ49342.1| integral membrane sensor signal transduction histidine kinase
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946492|gb|ABR52428.1| Histidine kinase [Staphylococcus aureus subsp. aureus JH1]
 gi|257787540|gb|EEV25880.1| sensor protein srrB [Staphylococcus aureus A9781]
 gi|257841217|gb|EEV65663.1| sensor protein srrB [Staphylococcus aureus A9763]
 gi|257843737|gb|EEV68138.1| sensor protein srrB [Staphylococcus aureus A9719]
 gi|257848527|gb|EEV72515.1| sensor protein srrB [Staphylococcus aureus A9299]
 gi|257850933|gb|EEV74876.1| sensor protein srrB [Staphylococcus aureus A8115]
 gi|257854309|gb|EEV77258.1| sensor protein srrB [Staphylococcus aureus A6300]
 gi|257857927|gb|EEV80816.1| sensor protein srrB [Staphylococcus aureus A6224]
 gi|257863544|gb|EEV86302.1| sensor protein srrB [Staphylococcus aureus A5937]
 gi|262075408|gb|ACY11381.1| sensor histidine kinase SrrB [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282589368|gb|EFB94459.1| sensor protein srrB [Staphylococcus aureus A10102]
 gi|282764308|gb|EFC04434.1| sensor protein srrB [Staphylococcus aureus A8117]
 gi|294968358|gb|EFG44382.1| sensor protein srrB [Staphylococcus aureus A8819]
 gi|297177456|gb|EFH36708.1| sensor protein srrB [Staphylococcus aureus A8796]
          Length = 583

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +            L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPK 581


>gi|332766037|gb|EGJ96247.1| his Kinase A domain protein [Shigella flexneri 2930-71]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|260776385|ref|ZP_05885280.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607608|gb|EEX33873.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio coralliilyticus ATCC BAA-450]
          Length = 485

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 67/234 (28%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     + +  L  L  + + I H++ +P+ AI +  +      ++   +  +  +  
Sbjct: 241 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADN-GRRFLDKNKLDRVDDNLS 299

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----------IAVDKRVQVSWTGE 107
                   M        S        D   +  +                 RV+++    
Sbjct: 300 RISALTDRMAKISNQLKSFTRKSDTSDKSVLDIEPILLSAKELVAPQIKSYRVELATHFN 359

Query: 108 KID-----LSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARF 160
                    + +  ++L+NL   A  ++    +  +    + ++   +  +  NG     
Sbjct: 360 HTTGSAEVNAIQLEQVLINLITNAAQAVEEQDERIVELRTEQTEASIMIYIDDNGPGI-K 418

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++   + +    +  +   +       +      +L  E         +  L 
Sbjct: 419 KDQAKHLFEPFFTTKKNGLGLGLSISQQIIKAMDGQLTVETSPYGGARFAIQLP 472


>gi|229093771|ref|ZP_04224870.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42]
 gi|228689656|gb|EEL43464.1| hypothetical protein bcere0021_44950 [Bacillus cereus Rock3-42]
          Length = 484

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  +        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAKSELGKGTSIFFSLEK 478


>gi|218559136|ref|YP_002392049.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|218365905|emb|CAR03647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli S88]
 gi|315285842|gb|EFU45282.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 110-3]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|196228199|ref|ZP_03127066.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196227602|gb|EDY22105.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1248

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 52/237 (21%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     L S  L +   + + H+I +P+  I     LL +  +  +     +  S SA 
Sbjct: 587 KKARDAALESARLKSEFLANMSHEIRTPMNGIIGMTGLLLDTELSPKQRDFTQTISSSAD 646

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                             +          G+V          +     I +   V     
Sbjct: 647 ALLTIINDILDFSKIEAGMLAFEEIDFQLGTVVEGSVELLAARAASREIELASLVYHDVP 706

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFP 161
                      ++L NL   A     +G  V  +       +     FS+   G      
Sbjct: 707 TNLRGDPGRLRQVLTNLIGNAVKFTDKGEVVVRANCQENAETHTTIRFSVTDTGIGI-SS 765

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   ++                   +       L       +               
Sbjct: 766 EAQERLFQPFVQADGSTTRRFGGTGLGLAICKQLVARMGGEIGVTSEAGKGSTFWFT 822


>gi|194433290|ref|ZP_03065570.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
 gi|194418384|gb|EDX34473.1| sensor histidine kinase/response regulator RcsC [Shigella
           dysenteriae 1012]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|187731557|ref|YP_001879435.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella boydii CDC 3083-94]
 gi|187428549|gb|ACD07823.1| sensor histidine kinase/response regulator RcsC [Shigella boydii
           CDC 3083-94]
          Length = 949

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|167762177|ref|ZP_02434304.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
 gi|167699820|gb|EDS16399.1| hypothetical protein BACSTE_00529 [Bacteroides stercoris ATCC
           43183]
          Length = 852

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/226 (7%), Positives = 53/226 (23%), Gaps = 18/226 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59
               L +  L +   + + H+I +P+ AI    +LL +          + ++ I ++   
Sbjct: 621 RDRALQADRLKSAFLANMSHEIRTPLNAIVGFSDLLKDLQAFSSEEVQQFVETININCTL 680

Query: 60  AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107
            +  +                   S +    + ++       +     +   +       
Sbjct: 681 LLALINDILDLSRIESGTMDFQFSSYNLTFIMQEVYDSQRLSMPQGVELCTDFPEGADKY 740

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +    ++L NL   A     +G        D        ++  G      ++    
Sbjct: 741 ITTDAVRLKQVLNNLINNAKKFTVQGSITLGYRVDESGYTTVFVEDTGAGISDEDQKHIF 800

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  +      +       +       +               
Sbjct: 801 ERFYKADSFTQGAGLGLSICQTIVERIHGTITVTSKPGRGTRFEVR 846


>gi|221066757|ref|ZP_03542862.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
 gi|220711780|gb|EED67148.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni KF-1]
          Length = 837

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 58/234 (24%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LD--EVGIEDEVMQLIRLSS 57
            +       +  + +   + + H++ +P+ +I    EL  L   +     E+   I  + 
Sbjct: 591 REARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFAELGHLRSRKSPQFSEMFNDIHSAG 650

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108
              +  +  +        +V  +       +         +          +++      
Sbjct: 651 QRMLALVNDLLDVAKLESAVGVIHLERIDLRGLIRPIARELEPLQHQKQIDLRLDLENFP 710

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKF 164
           +    +     +++ N+   A    P  G+V +  +   +          G      E  
Sbjct: 711 MIAKADPVRFQQVVRNMLANAIKFSPNHGRVDVIGRFDDHGNICIDFSDQGPGIPPQELD 770

Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    S          +       +       +  +   D   +    L 
Sbjct: 771 QIFQPFVQSSKTKDGSGGTGLGLAICRKIIDAMDGTISAKNKPDGGAIFRITLP 824


>gi|218690381|ref|YP_002398593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300981269|ref|ZP_07175446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|218427945|emb|CAR08865.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli ED1a]
 gi|300307633|gb|EFJ62153.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|324006600|gb|EGB75819.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324013107|gb|EGB82326.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|81245959|gb|ABB66667.1| sensor for ctr capsule biosynthesis [Shigella boydii Sb227]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|326330531|ref|ZP_08196839.1| two-component sensor histidine kinase [Nocardioidaceae bacterium
           Broad-1]
 gi|325951806|gb|EGD43838.1| two-component sensor histidine kinase [Nocardioidaceae bacterium
           Broad-1]
          Length = 494

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 55/206 (26%), Gaps = 16/206 (7%)

Query: 24  HDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGS----- 76
           H++ +P+  I   LELLDE    +  +  +L           +  + L   +        
Sbjct: 279 HELRTPLTIIGGHLELLDESDPAEVEQTRRLALDEVDRMSRLVGDLILLAKHDRPDFLTL 338

Query: 77  --VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
             VD      DI          D  +  +  G      +   + +L L   A      G 
Sbjct: 339 EEVDVDTLTEDILAKASALADRDWHLDAATPGTWRLDPQRVTQAMLQLCDNAVGHTAPGD 398

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVIL 188
           ++ +            ++  G      E   +I +                 +    V  
Sbjct: 399 RIAVGSATVDGTLRLWVRDTGPGV-PAEDRERIFERFARGSETGSGDRPGLGLGLAIVSA 457

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +A  +   +  E         +  L 
Sbjct: 458 IATAHGGTVGVEDATPAGARFTLTLP 483


>gi|313159680|gb|EFR59037.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 1049

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 66/228 (28%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     + +    L  + + H+I +P+ AI     +L     E E  + + +   +  
Sbjct: 679 ARDRAEESNRLKTAFL--ANMSHEIRTPLNAIVGFSAILASTDEEQEKQEYVSIIENNNA 736

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                          D    + + E VI   +     +      E+  
Sbjct: 737 LLLQLIGDILDLSKIEAGTLDFIHTDFDLNELMREKENVIRMKVREGVELLFEQKYEQCS 796

Query: 111 LSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  +R ++   +  +   +        +    +    E  F +   G+     +K  Q+ 
Sbjct: 797 VCTDRNRLSQVIINLLTNAAKFTQTGSIRFGYEMRDRELYFWVSDTGSGI-PADKTEQVF 855

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  V   +      +      ++      R+  E  +        +L 
Sbjct: 856 ERFVKLNTFKQGTGLGLSICKMIVEHLGGRIGVESEEGKGSKFWFILP 903


>gi|307635037|gb|ADI85238.2| osmosensitive potassium channel sensor histidine kinase KdpD
           [Geobacter sulfurreducens KN400]
          Length = 899

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 71/233 (30%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57
           A+      +  +L  ALL S I HD+ +P+ AI  +L+ L +      ++  ++L+  + 
Sbjct: 655 AEQAQILQARENLERALLNS-ISHDLRTPLVAITGALDTLRDKVHTLADESRLELLDTAW 713

Query: 58  MSAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             A    +F+      T               +  L        +    ++ + V    +
Sbjct: 714 EEAERLNRFVGNLLDMTRLESGAIKLKRELSDVQDLIGCALAALERRIGERGIDVRLAPD 773

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A    P    V I+ +         +   G      +  
Sbjct: 774 LPLVRIDMVLMTQVLVNLLDNALKYSPPDSGVEITARVDGGRLRIEMADRGPGIPEQDLK 833

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +     V        +       +   +   +  E      + +   L 
Sbjct: 834 RVFDKFYRIAVPEGAQGTGLGLSICKGIVEAHGGSIRAENRTGGGLRVIVTLP 886


>gi|301647691|ref|ZP_07247485.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|301074221|gb|EFK89027.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 146-1]
 gi|315615480|gb|EFU96112.1| sensor kinase protein rcsC [Escherichia coli 3431]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|300903600|ref|ZP_07121518.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|301306550|ref|ZP_07212613.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300404336|gb|EFJ87874.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300838210|gb|EFK65970.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|315255153|gb|EFU35121.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|215487437|ref|YP_002329868.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|300983211|ref|ZP_07176488.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|301048966|ref|ZP_07195955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|215265509|emb|CAS09911.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O127:H6 str. E2348/69]
 gi|222033980|emb|CAP76721.1| Sensor kinase protein rcsC [Escherichia coli LF82]
 gi|281179310|dbj|BAI55640.1| two-component sensor kinase [Escherichia coli SE15]
 gi|300299217|gb|EFJ55602.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 185-1]
 gi|300408612|gb|EFJ92150.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 45-1]
 gi|312946840|gb|ADR27667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli O83:H1 str. NRG 857C]
 gi|315292174|gb|EFU51526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 153-1]
 gi|315298048|gb|EFU57317.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 16-3]
 gi|330912049|gb|EGH40559.1| two-component sensor protein RcsC [Escherichia coli AA86]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|300948912|ref|ZP_07162974.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300958903|ref|ZP_07171007.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300314466|gb|EFJ64250.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300451608|gb|EFK15228.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|309702529|emb|CBJ01856.1| two-component system sensor kinase [Escherichia coli ETEC H10407]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|42779796|ref|NP_977043.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42735713|gb|AAS39651.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 463

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E     + ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKETTSSKQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  + +F          I  +K ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHNFLTRIAEKVNAIYKEKHIRVSFSCPPTLLVNLDEQRFEQVVV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 356 NILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVTSEVDHGSCFIISLP 454


>gi|34557363|ref|NP_907178.1| hybrid histidine kinase [Wolinella succinogenes DSM 1740]
 gi|34483079|emb|CAE10078.1| HYBRID HISTIDINE KINASE [Wolinella succinogenes]
          Length = 1019

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
            K         +L  +   + + H+I +P+ +I    ELL    ++       ++ I  S
Sbjct: 545 EKEQRIQAQQANLAKSEFLANMSHEIRTPLNSILGFAELLKPALEKNERFAGYLESIATS 604

Query: 57  SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVS 103
             + ++ +                +    D    L ++E +               +Q  
Sbjct: 605 GQNLLLIIDDILDLSKIESGKMEIHPSPTDIKAFLKELESLFLPSALKKNLSYELNLQEG 664

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLAR 159
                +       ++L NL   A      G          ++         +   G    
Sbjct: 665 IPDFLVMDEIRLRQVLFNLLGNAFKFTHEGKVSCSFRFQRQSASKITLFIEVSDTGIGIP 724

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++  +I +                 +       L       L  E            L
Sbjct: 725 LSQQS-RIFEPFTQQDAQNTRKYGGTGLGLTITKRLVEIMGGDLTLESRPKWGSTFFITL 783

Query: 214 E 214
            
Sbjct: 784 P 784


>gi|16767427|ref|NP_463042.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|205358145|ref|ZP_02576065.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|17865735|sp|P37461|ZRAS_SALTY RecName: Full=Sensor protein zraS
 gi|6960345|gb|AAF33505.1| Salmonella typhimurium sensor protein (HYDH) (SW:P37461); contains
           similarity to Pfam domain PF00512 (signal), Score=270.1,
           E=2.9e-77, N=1 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422732|gb|AAL23001.1| sensory kinase in two component regulatory system with HydG
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|205327269|gb|EDZ14033.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261249277|emb|CBG27139.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|301160669|emb|CBW20200.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312915279|dbj|BAJ39253.1| sensor kinase ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|321223373|gb|EFX48440.1| Sensor protein of zinc sigma-54-dependent two-component system
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. TN061786]
 gi|332990992|gb|AEF09975.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 465

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|88860966|ref|ZP_01135602.1| two-component system sensor histidine kinase/response
            [Pseudoalteromonas tunicata D2]
 gi|88817179|gb|EAR26998.1| two-component system sensor histidine kinase/response
            [Pseudoalteromonas tunicata D2]
          Length = 1340

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 20/230 (8%)

Query: 5    ICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
                  SM L+A    L + I H+  +P+  I   L  L    +   + E +  +  ++ 
Sbjct: 820  EQEKRHSMKLIAAKDTLLATISHEFKTPLTLILGPLAGLIAKTDKAADREKLIAMARNAE 879

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLS- 112
              +  +  +           +   +     +              ++ +  + +      
Sbjct: 880  RLLALVNNVLQHKSIHNPDSAPDNIDLYALLHTQIEGFCVLAEQHQISLVLSNDSHANCV 939

Query: 113  -----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                     +++ NL   A    P GG+VT+ +  S      S+   G      E     
Sbjct: 940  VSFQANAADQLVANLLHNAIKFTPAGGQVTVLLIKSDENCFLSITDTGIGIDADELQQIF 999

Query: 168  VDG---NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              G    +   ++   +    V  +   +   +    I       +  L 
Sbjct: 1000 TQGKRGRLTQELEGSGLGLSIVKDIVTRHGGEITVTSIPMQGSTFTVTLP 1049


>gi|323699230|ref|ZP_08111142.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459162|gb|EGB15027.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 643

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/250 (8%), Positives = 61/250 (24%), Gaps = 38/250 (15%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------- 48
           +     L  + ++ +   S + H++ +P+ +I    +LL++    +              
Sbjct: 391 EEANQRLRELDEMKSAFLSSVSHELRTPLTSILGFAKLLNKEFTRNFLPLVSPEGALARK 450

Query: 49  ------VMQLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIE 91
                  + +I          +             M          + +         + 
Sbjct: 451 GKRIRENLAIISHEGERLTRLINDVLDLNKIESGSMGWRDEELDMNEVIEVAASSVSGMF 510

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
               ++ R ++      I   R+R + +L   +   +     G VT+      ++    +
Sbjct: 511 AQTTLELRTEIQPGLPHIVADRDRMQQVLINLLNNASKFTEKGSVTLRAFPRFSQLRVEV 570

Query: 152 KINGNLARFPEKFTQIVDGNVES-------TIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
              G      ++       +                +       +      R+  E    
Sbjct: 571 VDTGTGIHPEDQSQIFEKFHQTHTDDTMVNKPKGTGLGLTICREIIEHYGGRIWVESEVG 630

Query: 205 HNVVLSALLE 214
                   L 
Sbjct: 631 VGSTFIFTLP 640


>gi|291279230|ref|YP_003496065.1| two-component sensor histidine kinase [Deferribacter desulfuricans
           SSM1]
 gi|290753932|dbj|BAI80309.1| two-component sensor histidine kinase [Deferribacter desulfuricans
           SSM1]
          Length = 371

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 66/224 (29%), Gaps = 12/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +        +  + ++ + I H+I +P+G+I     LL      +      +  +++   
Sbjct: 148 EEEHRRDEHLKSMGVMAANIAHEIRNPLGSIELFASLLARDLKNDKEKRVLIDSVLKGVK 207

Query: 58  MSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +                D +  +    + + +   +    ++    +    
Sbjct: 208 SINNTISNILLFTKEVTLSKKEYYLADIVDDVVLYLRHLMNDKKIKFINKIDDDFKIYCD 267

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           S    ++ +NL   A  ++   G++ I  +  +  ++  ++ NG          +I    
Sbjct: 268 SELMKQVFMNLIHNAIDAVDANGEIRIYCKQEEKFDVIVVEDNGCGIDEEFIK-KIFIPF 326

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             S      +    V  +   +   +  E            L +
Sbjct: 327 HTSKTKGTGLGLSIVYKIIKAHSGNIYVESDGQSFTRFIIKLGR 370


>gi|260856206|ref|YP_003230097.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|257754855|dbj|BAI26357.1| hybrid sensory kinase RcsC in two-component regulatory system with
           RcsB and YojN [Escherichia coli O26:H11 str. 11368]
 gi|323152279|gb|EFZ38569.1| sensor kinase protein rcsC [Escherichia coli EPECa14]
          Length = 933

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|229155006|ref|ZP_04283120.1| hypothetical protein bcere0010_12000 [Bacillus cereus ATCC 4342]
 gi|228628564|gb|EEK85277.1| hypothetical protein bcere0010_12000 [Bacillus cereus ATCC 4342]
          Length = 402

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      +E  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSNTCTEEERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQKLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++PRGG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPRGGDLYFTLVPDHKHIQLYIKDTGIGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|220917056|ref|YP_002492360.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954910|gb|ACL65294.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 560

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 77/236 (32%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIED------- 47
           +       + S  L +L  L + I H+I +P+  I    +L    LD+   +D       
Sbjct: 320 LRAAQDQLVRSEKLSSLGKLSASIAHEINNPLAGILTFAKLIVRTLDQGVPDDATRKTLV 379

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101
           + + L++  +      ++ +             + L  + +     ++    +Q      
Sbjct: 380 KHLLLVQRETERCSAIVRNLLDFARERPLTLKDVDLDAVVEEGLQLLSNQINIQNVTLEK 439

Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLA 158
            +           +  +  +N+ M A  ++ RGGK+T+    S        +    G   
Sbjct: 440 RLVPLPPVEGDFGQLRQACVNVIMNACEAMARGGKLTVESSASAGGGWVEIAFTDTGPGI 499

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P+  ++I D    +      +    V  +   +  ++  +        ++  L 
Sbjct: 500 -PPDHLSKIFDPFFTTKERGTGLGLSVVYGIVERHHGKIEIQSEVGKGTRIAIRLP 554


>gi|117925904|ref|YP_866521.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117609660|gb|ABK45115.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 667

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 25/228 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           L+     +L  + I H+I +P+ AI    ELL E   + E  + + + + +    L  + 
Sbjct: 275 LNKEK--SLFIANISHEIRTPLNAIIGLGELLQEEITDFEHKRQLNILTSAGDNLLLLIN 332

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WTGEKIDLS 112
                +      + + +    +++ +     +                            
Sbjct: 333 DILHLSKIESGSMLIEENIFSLQNLLNNTVGMFEQGASKKGLYLKVEVKNALPSFVKGDI 392

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               ++L NL   A      GG          +   FS+   G          +I     
Sbjct: 393 HRLRQVLFNLLGNAVKFTSCGGVTLTVSALENDRLSFSVSDTGIGIPSS-LQEKIFLPFQ 451

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +       L  + +  L  E  +      +  L 
Sbjct: 452 QADSSITRKFGGTGLGLAITQSLIVQMQGNLSVESHEGTGSTFTFDLP 499


>gi|117925955|ref|YP_866572.1| histidine kinase [Magnetococcus sp. MC-1]
 gi|117609711|gb|ABK45166.1| histidine kinase [Magnetococcus sp. MC-1]
          Length = 667

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 25/228 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           L+     +L  + I H+I +P+ AI    ELL E   + E  + + + + +    L  + 
Sbjct: 275 LNKEK--SLFIANISHEIRTPLNAIIGLGELLQEEITDFEHKRQLNILTSAGDNLLLLIN 332

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WTGEKIDLS 112
                +      + + +    +++ +     +                            
Sbjct: 333 DILHLSKIESGSMLIEENIFSLQNLLNNTVGMFEQGASKKGLYLKVEVKNALPSFVKGDI 392

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               ++L NL   A      GG          +   FS+   G          +I     
Sbjct: 393 HRLRQVLFNLLGNAVKFTSCGGVTLTVSALENDRLSFSVSDTGIGIPSS-LQEKIFLPFQ 451

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +       L  + +  L  E  +      +  L 
Sbjct: 452 QADSSITRKFGGTGLGLAITQSLIVQMQGNLSVESHEGTGSTFTFDLP 499


>gi|313902446|ref|ZP_07835848.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
 gi|313467244|gb|EFR62756.1| integral membrane sensor signal transduction histidine kinase
           [Thermaerobacter subterraneus DSM 13965]
          Length = 521

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 63/238 (26%), Gaps = 31/238 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           + ++           A+L   I H++ +P+  I    E L +  +E              
Sbjct: 245 LRRSQALR------RAMLA-TISHELRTPVTVIRGLGEALRDGLVEAGPAARRQAGQIVA 297

Query: 51  ----------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                      L +L+ +        +          +    L  + +       V    
Sbjct: 298 EAERLGRLIDDLFQLAQIETGQLDLRLERFAAGPWLEERATALEALVRERGARWQVRVDP 357

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            ++    + D     A++L NL   A       G+V +            +  NG     
Sbjct: 358 GLAGAWLEADPH-RLAQVLGNLVDNAARHAGPEGQVRLDAVLVPGGIRIEVADNGPGIDP 416

Query: 161 PE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    F     G   +      +    V  L   +  R+  E        L  +L +
Sbjct: 417 ADLPRIFEPFYRGREAARSRGAGLGLSIVRALVEAHGGRVGVESAPGQGTRLWFVLPR 474


>gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1102

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 53/221 (23%), Gaps = 27/221 (12%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF---MRLA 70
           + + H++ +P+ AI    E L +         + + +  I  S    +  +     +   
Sbjct: 601 ANMSHELRTPLTAILGLSEALRDEVFGPLTAKQHQKLATIEQSGQHLLELINDVLDLSKI 660

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---------ERAKILLN 121
                 +                    +  Q           R            ++L+N
Sbjct: 661 ESGKMELHLSNTDIQGLCDASLAFVRQQAHQKQIKLSAHVPPRIGKVKIDERRMRQLLIN 720

Query: 122 LFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGN------VE 173
           L   A    P  G V I V+         F +   G     PE   ++            
Sbjct: 721 LLSNAVKFTPESGAVWIEVKGDLEHETLQFIVADTGIGI-APENIGKLFQPFVQVDSSFT 779

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    V  +   +   +  E         +  L 
Sbjct: 780 RRYAGTGLGLALVRQVIELHGGSVSLESELGSGSRFTVSLP 820


>gi|260175349|ref|ZP_05761761.1| putative two-component system, sensor kinase [Bacteroides sp. D2]
 gi|315923581|ref|ZP_07919821.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697456|gb|EFS34291.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 570

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    E++ +   E+E  + +++ S + 
Sbjct: 333 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEERKEFVKIISSNN 392

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWT 105
           I+ L+ +               +T +   +  L +              VQ+     +  
Sbjct: 393 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQILFTEKADQ 452

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A    P+G        +   +   F +K  G      +K 
Sbjct: 453 CMMYTDRIRLSQVIINFTNNALKFTPKGSIEMGYRIEEAKDEIYFYVKDTGIGI-PADKI 511

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +  V   S I    +      ++       +  E  +         + +
Sbjct: 512 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGVESKEGEGSRFWFRIPR 564


>gi|240141277|ref|YP_002965757.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
 gi|240011254|gb|ACS42480.1| putative PAS sensor hybrid histidine kinase [Methylobacterium
           extorquens AM1]
          Length = 698

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 65/230 (28%), Gaps = 23/230 (10%)

Query: 8   NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
              + ++  +   + + H++ +P+  I    +LL +  ++ E    +     S       
Sbjct: 173 RAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGL 232

Query: 64  -LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110
               +  +    G +D      D+  +             +  + +   +       ++ 
Sbjct: 233 VDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVG 292

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEK---F 164
            +    +IL+NL   A      GG       S +      + +++  G           F
Sbjct: 293 DADRVRQILVNLAGNAIKFTQTGGVGVSLARSGEGQGEGLVLTVEDTGPGIPEERIPILF 352

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+  ++ +   +       L       +              +L 
Sbjct: 353 EEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSTFRVMLP 402


>gi|224535688|ref|ZP_03676227.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522698|gb|EEF91803.1| hypothetical protein BACCELL_00552 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 980

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 64/227 (28%), Gaps = 19/227 (8%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAI 61
               L S  L +   + + H+I +P+ AI     LL   ++    +E + +I  ++   +
Sbjct: 608 REKALESERLKSAFLANMSHEIRTPLNAIIGFSSLLTTTEDEHEREEFISIIENNNQLLL 667

Query: 62  IRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +             +   +           +    +       V   +          
Sbjct: 668 QLISDILDLSKIEANTLDFNYQNVDLNGLARDVERTVRRRLQPNVVLNFIPGVTECHVQT 727

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                +++L+NL + A      G       +    E  F +K  G      E   +I + 
Sbjct: 728 ERNRLSQVLINLLVNASKFTSTGSIT-FGYEIRGEELYFYVKDTGRGI-SQEDQNKIFER 785

Query: 171 NV--ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
               ++      +       +  + K R+  E    D        + 
Sbjct: 786 FTKVDTFTQGTGLGLSICKNIIEKMKGRIGVESEGKDKGSTFWFTIP 832


>gi|222056070|ref|YP_002538432.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221565359|gb|ACM21331.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 661

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           A++     +   L  ALL S + HD+ +P+ +I  +L  L        E   ++L+  + 
Sbjct: 425 AEHAQILQAREKLERALLNS-VSHDLRTPLVSITGALSTLRNEGCAPHEKGRLELVDAAW 483

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
             A    +F+      T              D    +G     +       +  + +S  
Sbjct: 484 EEAERLNRFVGNLLDMTRVEAGELKLKKEPCDIQDLVGCALAPLDARLQDREVLIDLSDD 543

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              + +      ++L+NL             + I  +   +  I +++  G      E  
Sbjct: 544 LPLVQMDMVFMTQVLVNLLENGMKYSTPRTPLAIWAKTDDDLIILAVEDRGPGVPEKELV 603

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +     V        +       +   +   +  E I+   + +   + 
Sbjct: 604 KIFDKFYRVPVPEGAGGTGLGLSICKGIVEAHGGTIRAENIEGGGLRVLVAIP 656


>gi|86160638|ref|YP_467423.1| signal transduction histidine kinase NtrB [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777149|gb|ABC83986.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 627

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           + +N+      M+ V  L   + HD  + +  +    ELL  D    +  + +       
Sbjct: 244 LEQNLRQA-QKMEAVGRLAGGVAHDFSNVLAVVLGYSELLVRDLPATDPRLRECADGIIE 302

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +A          L   R        +     + D+ +++   I     V  +       +
Sbjct: 303 AAHRAVGVTRQLLTLSRKKLLRPEVLSLNKVVQDLGKLLGRAIGERIEVTTALQEHPWPV 362

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDS-------------KNENIFSLKING 155
             +  ++   L      A  ++P GG + I+  +                    +++ +G
Sbjct: 363 LADADQLAQVLLNLAVNARDAMPDGGPLHIATANVEVPQALRELSLPAGRYVTLTVRDSG 422

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +I +    +      +    V  +  +    +  E         +  L 
Sbjct: 423 VGM-TEDVRARIFEPFFTTKETGTGLGLATVYGIVRQAGGAIRVESRPGAGTSFTVYLP 480


>gi|328953637|ref|YP_004370971.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453961|gb|AEB09790.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 625

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 64/225 (28%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSL----ELLD-EVGIEDEVMQLIRLSS 57
               L +  L     + + I H+I +P+  I        E LD       E +Q+I    
Sbjct: 399 QEKLLQNERLAILGRMAAHISHEIKNPLMVIGGFARQVRENLDGSPEKNLEKLQIIIDEI 458

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                 L  +     ++     +  L          +         R+++    +    +
Sbjct: 459 RRLEDFLLEVGRYGKFSEPHLVVGDLNVLIQEVCRFLDPILEEKRVRLKLDLDPKLPTFA 518

Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +     ++ LNL   +  ++   G +T + +      +  +   G     PE   +I  
Sbjct: 519 FDPEHLRQVFLNLAKNSLEAMEHSGTLTFASRTVPGHILVEISDTGVGI-PPEALAKIFQ 577

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   ++  +           ++   +
Sbjct: 578 PFFSTKPRGSGLGLAISQQIMAAHQGEIQIASEPGRGTRVTLSFQ 622


>gi|323698790|ref|ZP_08110702.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323458722|gb|EGB14587.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 475

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 76/232 (32%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
           +       + +  LV++  L S I H++ +P+  +  + + L E   +    ++      
Sbjct: 228 LDDRQEQLIEARKLVSIGTLTSGIAHELNNPLNNVSLTADTLLEELDDLPEAEVRELLGD 287

Query: 55  ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107
                  +S      L F R        +     +    +++         +V+      
Sbjct: 288 IINETGRASEVVRNLLDFSREEERPLARLSMNNVIRQTLKLVGNQLSLNGIKVEADLPEG 347

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             D+  +     ++ +NLF+ A  ++ +GG + + V+   +     +   G      +  
Sbjct: 348 LPDIHGDMHYLQQVFINLFLNADQAMEKGGTLGVKVRRDHDRLCVDVSDTGCGM-DRDTL 406

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++I D    +        +    +  +  ++   +  +  +      +  L 
Sbjct: 407 SRIFDPFFTTKPVGKGTGLGLSIIYGILKKHGGGIDVQSEEGVGTTFTVCLP 458


>gi|295399014|ref|ZP_06808996.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978480|gb|EFG54076.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 595

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 60/236 (25%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 358 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAATDEEKKEMAKVIYD 413

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW------ 104
                       L   R+  G+       + L     ++I  F  + K  Q+        
Sbjct: 414 ESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDN 473

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L NL   A     + G V I  + +       ++ +G      + 
Sbjct: 474 EDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDL 533

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +   +K  +            +  L 
Sbjct: 534 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589


>gi|312110380|ref|YP_003988696.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|311215481|gb|ADP74085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 595

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 60/236 (25%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 358 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAATDEEKKEMAKVIYD 413

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW------ 104
                       L   R+  G+       + L     ++I  F  + K  Q+        
Sbjct: 414 ESLRMGRLVNDLLDLARMEAGHITLNYETVQLAPYIGRIIRKFQGLAKEKQIDLSAEFDN 473

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L NL   A     + G V I  + +       ++ +G      + 
Sbjct: 474 EDIRIRMDPDRIEQVLTNLIDNAIRHTDQNGTVKIIAEQNGGGVTIHVQDSGTGIPEEDL 533

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +   +K  +            +  L 
Sbjct: 534 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGTISVHSKLHEGTTFTFHLP 589


>gi|187776723|ref|ZP_02993196.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC
           15579]
 gi|187775382|gb|EDU39184.1| hypothetical protein CLOSPO_00238 [Clostridium sporogenes ATCC
           15579]
          Length = 906

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            KN    + S  L + L   I HD+ SP+  I  S+                ELL  V  
Sbjct: 666 QKNSKLEIESERLRSNLLRSISHDLRSPLAGIKGSVSTIIENGNLISNDKKEELLQGVYD 725

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + E +  +  + +S     +           V+ +I                K       
Sbjct: 726 DTEWLIRLVENLLSMTRFEEGNMEIKKNMELVEEVIYEAVQRTSKRFKDRKIKVKIPENV 785

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L+NL   +    P+   + +   + + +  F +  NGN         
Sbjct: 786 IMAPMDGSLIKQVLINLLDNSLKFTPKDSLIEVRAYEKEEKVFFEVIDNGNGISEEILPH 845

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +  +     +       +   +   +          V    + K
Sbjct: 846 IFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHNGMIDAYNKKAGGAVFRFYIPK 900


>gi|167630855|ref|YP_001681354.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
 gi|167593595|gb|ABZ85343.1| sensor histidine kinase [Heliobacterium modesticaldum Ice1]
          Length = 558

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 30/237 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSM 58
            +   + SM     L + + HD+ +P+  I    E L +          ++ ++I   + 
Sbjct: 321 QLARGMQSMR---DLAANVSHDLRTPLFLIQGYAEALRDDMAKTPDDRRQMAEIILEETD 377

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--- 107
                ++ M                +VD    +  + + +       +   +        
Sbjct: 378 RMQRLVQDMLQLAQLESGYFELKREAVDPEALIYGVARKLSGAADERQIRLICLAYPGDA 437

Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        + L+NL   A    P GG+V + +        FS+  +G      + 
Sbjct: 438 ALPAIHADPDRLTQALINLVDNALRHTPAGGEVVLGLTAQAQSVRFSVDDSGPGLAEADL 497

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +                 +    V  +   +   +  E            + 
Sbjct: 498 -DRIWERFYRGEKSRSRKTPGTGLGLSIVKAIVESHGGSVGAENRTGGGASFFFTIP 553


>gi|94265379|ref|ZP_01289133.1| PAS [delta proteobacterium MLMS-1]
 gi|93454132|gb|EAT04461.1| PAS [delta proteobacterium MLMS-1]
          Length = 794

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLI 53
           MA+        +  + L+   I HD  + +  I    +LL      D       ++++  
Sbjct: 415 MAEARELQADKLSSLGLMAGGIAHDFNNILTPITMHAQLLRRKLPADGSAAGLDQILKAA 474

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           + +S      L F R        V   + + +  + ++  +  +  ++     E+  ++ 
Sbjct: 475 QRASALVRQILDFSRQGKHEPVQVQLGVIIKEAIKFLQAAVPANVTIRREIKSERDRVAA 534

Query: 114 ERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +  ++L  +  ++  +                              +    ++  NG+  
Sbjct: 535 DPTQMLQVVMNLSLNAVQAIGDSEGVVTIELTETEPPSGAEKSGVSHWLRLAVCDNGSGI 594

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE   Q+ D    +    +   +       +   +  ++  +            L 
Sbjct: 595 -DPEHLPQLFDPFFTTKEHGEGTGMGLPVAHGIVTRHGGQIEVQSDPGAGTCFEVYLP 651


>gi|37521385|ref|NP_924762.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212382|dbj|BAC89757.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 448

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 71/244 (29%), Gaps = 33/244 (13%)

Query: 4   NICFNLSSMD---LVALLC--------SRICHDIISPIGAIHNSLELLDEV----GIEDE 48
            +  +L S +   L A           + + H++ +P+  I    ++L         + E
Sbjct: 188 ELRLSLESAEQSRLAAEAANRAKDEFLALLSHELRTPLNPIIGWTQMLKRGSVAADKQVE 247

Query: 49  VMQLIRLSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIE----QVIEDFIAV 96
           V+++I  ++      ++ +                 V     +         + +D    
Sbjct: 248 VLEIIERNAKLQNQLIQDLLDVARIEQGKFSHRPQPVILSGVVQAAVEAVRTLAKDAGVA 307

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            +        E +       +++ NL   A    P GG V + + ++ +     +  +G 
Sbjct: 308 LEVEVAERLPEVMVDPTRMQQVVWNLLTNAIKFTPSGGWVQLHLVEAADCLCLVVSDSGT 367

Query: 157 LARF---PEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLS 210
                  P  F +                +  + V  +   +  R+  +        V +
Sbjct: 368 GISPAFIPHLFERFRQAGDAGTRRQGGLGLGLFIVRYIVELHGGRVWAKSDGQGKGAVFT 427

Query: 211 ALLE 214
             L 
Sbjct: 428 VELP 431


>gi|332756179|gb|EGJ86530.1| sensor kinase protein rcsC [Shigella flexneri 2747-71]
          Length = 949

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|332096152|gb|EGJ01155.1| sensor kinase protein rcsC [Shigella dysenteriae 155-74]
          Length = 933

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|310659855|ref|YP_003937576.1| sensory box histidine kinase yycg [Clostridium sticklandii DSM 519]
 gi|308826633|emb|CBH22671.1| sensory box histidine kinase yycg [Clostridium sticklandii]
          Length = 602

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 65/235 (27%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           ++I  +    D+     + + H++ +PI  I +  E L     ++  +    +++I   +
Sbjct: 361 QDITESQRLEDMRREFVANVSHELKTPITTIKSYSETLLCGALEDKELSKNFVEVIENEA 420

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SWT 105
                 +K +                    + I         V                 
Sbjct: 421 DRMSSLVKDLLQLSHMDYEKVVWEMHHLDLREIVTDSVRKLEVHFQNKNQKLNMKISDEA 480

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  ++++NL   A    P  G + IS Q      IF ++ +G      +   
Sbjct: 481 VPIYADRGKIQQVIINLLTNAIKYTPENGNIRISAQVVDKNAIFQIQDSGIGIPKEDIK- 539

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +                 +       +  ++K  +      +   + +    
Sbjct: 540 RIFERFYRVDKGRSRAQGGTGLGLSIAHNIIKQHKGSIKVSSELEKGSIFTVYFP 594


>gi|322420713|ref|YP_004199936.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127100|gb|ADW14660.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 635

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 66/232 (28%), Gaps = 27/232 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVMQLI 53
           + +  + ++  L + I H+I +P+ ++    E L                      +Q+I
Sbjct: 401 IQTEKMSSIGVLATGIAHEINNPLASVAGCAEGLLRRFNDTPGLSDDPRLDAFQHYLQVI 460

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK 108
              S      +  +      +  +   + L  + +     +          +  S     
Sbjct: 461 VRESYRCKGIIDNLLSFGRKSDGLAVNVDLNALLREIIELISHQPGFRHVSLATSLQQGL 520

Query: 109 IDLSRER---AKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +  +     ++ +NL + AH +    G    ++          +++ +G      +  
Sbjct: 521 PCVHGDPSALRQVCMNLLINAHQAITGEGSVEVLTCAPKGGMISVTIRDSGCGIPL-DNL 579

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   +   +  +         + LL 
Sbjct: 580 DRIWDPFFTTKEAGKGIGLGLALTYSIVKRHHGEIQVKSKVGEGTEFTVLLP 631


>gi|254561745|ref|YP_003068840.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
 gi|254269023|emb|CAX24984.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           DM4]
          Length = 903

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + + +      MD V  L   I HD  + + AI    +LL           + +  I+ +
Sbjct: 477 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 535

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
           +  A   ++ +            ++ +G+    +   +      +V              
Sbjct: 536 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 595

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157
               +  ++++NL + A  ++P GG +TI   +              +  +  +   G  
Sbjct: 596 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTGEG 655

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   +I +    +        +    V  + +++   +  +            L +
Sbjct: 656 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 714


>gi|240139289|ref|YP_002963764.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           AM1]
 gi|240009261|gb|ACS40487.1| sensor hybrid histidine kinase with multiple PAS and response
           regulator receiver domains [Methylobacterium extorquens
           AM1]
          Length = 903

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + + +      MD V  L   I HD  + + AI    +LL           + +  I+ +
Sbjct: 477 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 535

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
           +  A   ++ +            ++ +G+    +   +      +V              
Sbjct: 536 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 595

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157
               +  ++++NL + A  ++P GG +TI   +              +  +  +   G  
Sbjct: 596 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTGEG 655

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   +I +    +        +    V  + +++   +  +            L +
Sbjct: 656 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 714


>gi|209919677|ref|YP_002293761.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SE11]
 gi|209912936|dbj|BAG78010.1| two-component sensor kinase [Escherichia coli SE11]
          Length = 949

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|193212447|ref|YP_001998400.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
 gi|193085924|gb|ACF11200.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
          Length = 922

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 71/240 (29%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL--- 55
           +   +    ++ +  L   I HD+ + +  I    E+L     E     + +++I     
Sbjct: 525 EQQLYQSQKIESIGRLAGGIAHDLNNLLTPILGYSEMLLKRIREPEKSKQYVEVIHHAAL 584

Query: 56  -SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            S       L F         +VD    + D EQ++   I  D  ++     + + +  +
Sbjct: 585 KSRELVRQLLAFSSRQSLEFRTVDLNEVIRDFEQLLRRTIRADIDIRYHLHEQPLPMRGD 644

Query: 115 RAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156
            +++   +      A  ++P               +G +       + +  + +++  G 
Sbjct: 645 ASQLEQIIMNLAVNAEDAMPAGGELIMESSLLVIKKGEEKYFEGLAAGSYALLTVRDTGE 704

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + +    +        +    V  +  ++   +              LL 
Sbjct: 705 GMDQKTLS-HLFEPFYTTKPKGKGTGLGLSTVYGIVRQHGGIIQVGSERGEGTCFKILLP 763


>gi|188535331|ref|YP_001909128.1| osmolarity sensor protein [Erwinia tasmaniensis Et1/99]
 gi|188030373|emb|CAO98264.1| Osmolarity sensor protein [Erwinia tasmaniensis Et1/99]
          Length = 449

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 60/205 (29%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMAEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +   +              + + N+ + A      
Sbjct: 295 QFERADLNSVLGEVVAAESGYEREIENAVLPGELMVDINPLAIKRAVANMVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ NG      +        V G+   +     +    V  +
Sbjct: 355 WIKVSSGRELQ--RAWFQVEDNGPGIEPDQLQHLLQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L  +  +   + + A L 
Sbjct: 413 VDAHHGALEIDSSEQGGLRIRAYLP 437


>gi|161950145|ref|YP_402525.2| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Shigella dysenteriae Sd197]
          Length = 949

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|218530776|ref|YP_002421592.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218523079|gb|ACK83664.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 903

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + + +      MD V  L   I HD  + + AI    +LL           + +  I+ +
Sbjct: 477 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 535

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
           +  A   ++ +            ++ +G+    +   +      +V              
Sbjct: 536 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 595

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157
               +  ++++NL + A  ++P GG +TI   +              +  +  +   G  
Sbjct: 596 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTGEG 655

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   +I +    +        +    V  + +++   +  +            L +
Sbjct: 656 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 714


>gi|163852022|ref|YP_001640065.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163663627|gb|ABY30994.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 903

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + + +      MD V  L   I HD  + + AI    +LL           + +  I+ +
Sbjct: 477 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 535

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
           +  A   ++ +            ++ +G+    +   +      +V              
Sbjct: 536 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 595

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157
               +  ++++NL + A  ++P GG +TI   +              +  +  +   G  
Sbjct: 596 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVDGERPVGIPAGDHVMIEVTDTGEG 655

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   +I +    +        +    V  + +++   +  +            L +
Sbjct: 656 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 714


>gi|197118871|ref|YP_002139298.1| response receiver sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088231|gb|ACH39502.1| response receiver sensor histidine kinase response regulator, PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 663

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
           + +        M+ V  L   + HD  + +  I     +L         E  + + I ++
Sbjct: 285 LMEEQLRQSQKMEAVGQLAGGVAHDFNNILTVIAGYANMLMMDLPALGNEVRLAEQIAIA 344

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KI 109
           +  A    K +             + LG+I Q +E F+       +              
Sbjct: 345 TERAAELTKGLLAFSRKQPMAPQKLDLGEIVQRVETFLTRVIGEDIQLKTHLLPDSLPVW 404

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI------------SVQDSKNENIFSLKINGNL 157
               +  ++L+NL   A  ++  GG  TI                + +  +  +  NG  
Sbjct: 405 VDMGQIEQVLINLAANARDAMENGGTFTIATGLFEDDSLSAFCGPAGSYAVIIVSDNGKG 464

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I +    +        +    V  +  +++  +  +       V S  L 
Sbjct: 465 M-PAEISKRIFEPFFTTKEVGKGTGLGMAIVYGIVQQHRGYITVDSKPGDGTVFSIYLP 522


>gi|332712423|ref|ZP_08432350.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332348897|gb|EGJ28510.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 518

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            K++       +L + + S I H+  +P+  I +S ELL +           +  Q I  
Sbjct: 283 RKSLEQEKELSELKSRVISTISHEFRTPMMMIQSSTELLAKYSEKLSEDKRLKHFQQIGW 342

Query: 56  SSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +       L             +     Y         + +  QV             S 
Sbjct: 343 AVEHMNQLLTNVIFLDKTESGELDCHPEYLNLEKLCQKIINNLQVTLSSDYKIDFSTQSN 402

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           + +     +   +IL N+   A    P+GG +   V     E I +++ +G      EK 
Sbjct: 403 SSQVNLDEQLVGQILTNILSNAVKYSPQGGIIKFDVFCQPEEAILTIRDSGIGIPSKEKQ 462

Query: 165 TQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    + +       +           ++ ++  +           +L 
Sbjct: 463 RVFDSFYRATNVGAIKGTGLGLAIAKKCVELHRGKINLDSEVGVGTKFQVILP 515


>gi|329936871|ref|ZP_08286550.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329303796|gb|EGG47680.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 477

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 63/216 (29%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSAIIRLKFMRLAFGY 73
           + +   H++ +P+  I   L+L  + G+    ++     I        + ++ + L    
Sbjct: 258 MAADTSHELRTPLATISGWLDLHRQGGVSGPGLETALEHIENEVGRMRLLVEDLSLLARL 317

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDLSRERAKILLNLFMV 125
                      D+ ++    +   + +                +  +    +++ NL   
Sbjct: 318 DAGRPVEQDPVDLTELAAGVVEDAQIIHPERRVALASAPPALVLGDAGRLQQVVRNLVGN 377

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P    V + +   + +    +  +G      +   +I +                
Sbjct: 378 AVQHTPARTGVLVEITLDRKDVRLRVVDDGPGIPAQDLP-RIFERFWRAEASRSRAYGGS 436

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  + H +   +  E        ++ LL +
Sbjct: 437 GLGLAIVEAIVHAHHGHVDVESEVGVGTTVTVLLPR 472


>gi|317509452|ref|ZP_07967070.1| hsp90-like protein [Segniliparus rugosus ATCC BAA-974]
 gi|316252281|gb|EFV11733.1| hsp90-like protein [Segniliparus rugosus ATCC BAA-974]
          Length = 567

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 59/217 (27%), Gaps = 18/217 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM--SAIIRLKFMRLAFGYT 74
              +   H++ +P+ AI    EL  +       + + R+ S        ++ +       
Sbjct: 335 QFVADASHELRTPLTAIRGFAELHRKGVGVSTAVAMSRIESEAIRMGKLVEDLLALARTD 394

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----------RERAKILLNLF 123
                 +   D+ Q++ D +   K +                           ++L NL 
Sbjct: 395 EQRPLELEPVDMFQLMTDAVHDAKAIAPDREVVFQLQPSGGAPVVLGDEPCLRQVLSNLV 454

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178
             A +       VT+ +     + +  ++  G      +    F +      +   +   
Sbjct: 455 SNALSHTGDEASVTLWLGGDAQDVLLEVRDTGPGLSPEDAERIFERFYRVDPSRARSSGG 514

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +   +  +            L   L +
Sbjct: 515 SGLGLAIVDAIVRAHGGQASVSSELGAGTTLRVRLPR 551


>gi|262381390|ref|ZP_06074528.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296567|gb|EEY84497.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 563

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            KN   +L    + A           + + H+I +P+ AI    EL+     ++E M   
Sbjct: 325 RKNQELSLEEAKVKAEAADKMKSKYLADMSHEIRTPLNAITGFSELMAFADTDEERMSYY 384

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKR 99
            +  M+  + ++ +      +                 + +  +    ++          
Sbjct: 385 DVIKMNNQLLMQLINDILDISKIEADAIKITYEQLDVSELMDTIYASAKLRVPGGVKLVL 444

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            + +        S    +++ NL   A  +   G           N+  F ++  G    
Sbjct: 445 EKGADHHMFGTDSMRLLQLINNLVNNAIKNTKEGSITMGYTIQPDNQLRFYVRDTGIGID 504

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   +   +       L  +    +            S +L 
Sbjct: 505 KDKLKDVFGRFVKINDYMEGIGLGLAICKGLVVKMGGLIHVTSELGVGSEFSFILP 560


>gi|239909229|ref|YP_002955971.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239799096|dbj|BAH78085.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 482

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 65/232 (28%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
            + +   L     L  +  + + I H+I +P+G I ++ ELL       +    +L+   
Sbjct: 248 RERLERELQQQEKLAGMGRMVAGIAHEIRNPLGIIRSTAELLLKRAKDADPANARLLSAI 307

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
              +    K +     Y    +      D+  + +  +   +                  
Sbjct: 308 FDESKRLSKTVGDFLDYARPKNPRQDEVDLALICDQALTFLEAKCEELGIVVSRDYAPGL 367

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSLKINGNLARF 160
                     + + N+   A  ++    +               +E   ++   G     
Sbjct: 368 TVRGDKDLLYRAVYNVLSNALDAMAEDKEKVRDPALAVAATRDGDELTLTIADTGPG-FC 426

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           P+   +++D    +      +    V  +   +   L  +   +    ++  
Sbjct: 427 PDNKDRVLDPFFTTKDAGTGLGLAIVRTIVESHNAALALDNAPEGGARVTMT 478


>gi|238913751|ref|ZP_04657588.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|228984514|ref|ZP_04144691.1| hypothetical protein bthur0001_12190 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775217|gb|EEM23606.1| hypothetical protein bthur0001_12190 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      +E  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSNTCTEEERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQKLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++PRGG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPRGGDLYFTLVPDHKHIQLYIKDTGIGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|194446308|ref|YP_002043421.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197263097|ref|ZP_03163171.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|194404971|gb|ACF65193.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197241352|gb|EDY23972.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|153004658|ref|YP_001378983.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028231|gb|ABS25999.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 584

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 77/236 (32%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE-------D 47
           +       + +  L +L  L + I H+I +P+  I    +L    L++   +        
Sbjct: 337 LRAAQDQLVRNEKLSSLGKLSASIAHEINNPLAGILTFAKLIVRTLEQGVPDEATRAALI 396

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101
           + + L++  +      ++ +             + + ++ +     +A   R+Q      
Sbjct: 397 KHLHLVQRETERCTAIVRNLLDFARERPLAVKDVDVNEVVEEAVLLLANQIRIQGVTLDK 456

Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA 158
            +           +  +  +N+ M A  ++ RGG++ I     D       + K  G   
Sbjct: 457 RLGAIPVVSADFGQLRQACVNVIMNAIEAMGRGGRLEIESALVDGGRWVEVAFKDTGPGI 516

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE  T+I D    +      +    V  +   +  ++           ++  + 
Sbjct: 517 -APEHLTKIFDPFFTTKERGTGLGLSVVYGIVERHGGKVDLTSEVGKGTRIAFRIP 571


>gi|299139100|ref|ZP_07032276.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
 gi|298598780|gb|EFI54942.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
          Length = 459

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 57/226 (25%), Gaps = 30/226 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--------MSAIIRLKFMRL 69
             + + H++ +P+ +I   +ELL + G  D  M                      + + +
Sbjct: 217 FVANVSHELRTPLTSIMGYVELLIDDGNADANMTAQSREFFDAILKNAQRMGRLTEDLLV 276

Query: 70  A-FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---------KIL 119
                +G          +  ++++ IA    +       +I    +           ++L
Sbjct: 277 MAKVDSGEQKINPAPVRVAALLQESIAAASGLLKDDARLEIAAMVDTEVMADTDAVVQVL 336

Query: 120 LNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            NL   A                  V    +   FS++  G      E   +I +     
Sbjct: 337 SNLIENALNYGRGAHGSLVVMAAEMVAGPPSMVKFSVRDFGAGI-AFEHRERIFERFYRA 395

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       L   +   +  E            L 
Sbjct: 396 DKARSRESGGTGLGLSIAKHLVESHGGTIWVESDLGRGSRFCFTLP 441


>gi|218259710|ref|ZP_03475337.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224937|gb|EEC97587.1| hypothetical protein PRABACTJOHN_00996 [Parabacteroides johnsonii
           DSM 18315]
          Length = 514

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50
            K    NL      A L         + + H+I +P+ AI    EL+   D         
Sbjct: 275 RKGQELNLEEAKHKAELADKMKSKYLADMSHEIRTPLNAITGFSELMAFADSDEERKGYY 334

Query: 51  QLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           ++I+ +++  +  +                    VD    +      I+  +    ++ +
Sbjct: 335 EIIKTNNLLLMQLINDILDLSKIEADAIKISYEPVDINELMDTTFASIKLRMPEGVQLFL 394

Query: 103 SWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                      +     +++ NL   A  +  +G               F +K  G    
Sbjct: 395 EKGSCTCRFGTDSIRLLQLINNLANNAIKNTKQGSITLGYTCLPDKHLKFYVKDTGIGIA 454

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +        +   +   +       L  +    +  E         S +L 
Sbjct: 455 KDKLESLFTRFVKVNDYVEGIGLGLAICQGLVTKMGGSMHVESELGIGSTFSFVLP 510


>gi|205360185|ref|ZP_02835113.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205340594|gb|EDZ27358.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|320088603|emb|CBY98362.1| sensor kinase for HydG, hydrogenase 3 activity [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|197124731|ref|YP_002136682.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196174580|gb|ACG75553.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 686

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 68/249 (27%), Gaps = 37/249 (14%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43
            K +   L+ +  +V++  L + + H++ +P+  +  +L  LDE                
Sbjct: 291 RKQLHARLALADRMVSVGTLAAGVAHELNNPLAYVIANLSYLDEQLTVLAPRVAAAGSSR 350

Query: 44  ---------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
                        +         +       F R    + G V     L     V  + I
Sbjct: 351 EPDLASALLDAVHDARDGAERMRVIVRDLKTFSRPDEEHAGPVPLGPLLDSCVSVAWNEI 410

Query: 95  AVDKRV--QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNEN 147
               R+    +             ++ LNL + A  ++P G      ++         + 
Sbjct: 411 RHRARLLRAPTDVPPIQGCQARLGQVFLNLLVNAAQAIPEGHVDEHQIRVSARALPGGQV 470

Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDH 205
              +   G+    PE   +I D    +        +       +       +  E +   
Sbjct: 471 AVEVSDTGSGI-APEHLPRIFDPFFTTKPPGVGTGLGLSICQSIVSAMGGEIQVETVLGR 529

Query: 206 NVVLSALLE 214
                 +L 
Sbjct: 530 GTTFRVILP 538


>gi|163848197|ref|YP_001636241.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526102|ref|YP_002570573.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
 gi|163669486|gb|ABY35852.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222449981|gb|ACM54247.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
            Y-400-fl]
          Length = 2782

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 72/236 (30%), Gaps = 25/236 (10%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            ++I   + +        S + H++ +P+ AI   +++L      +    +   + +I+ +
Sbjct: 2533 RDITREIEADKEKRQFISDVSHELRTPLTAIKGYVDVLLLTASLNLTPDQINYLTIIKNN 2592

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEK 108
            +      ++ +                 +I        + +  ++      V++      
Sbjct: 2593 TNRLRALIEDILEFSRPDSKKKLTFTQVEIPAVIDEVVQSLRLEYERKGMTVRIDAPPTL 2652

Query: 109  IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKF 164
              ++ ++    +I+ NLF  A      GG +T+    +  N     ++  G     PE+ 
Sbjct: 2653 PPVTADQKRVSQIIFNLFSNAVKYTYEGGSITVRAFLNRANMMQIEVEDTGVGM-SPEQL 2711

Query: 165  TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      +            +       L   +   +            +  + 
Sbjct: 2712 KKLFRPFYRADNPLRDIAGGTGLGLSIAKQLVEMHGGEIWVTSELGKGSTFAFAIP 2767


>gi|307626243|gb|ADN70547.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli UM146]
          Length = 949

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|195874360|ref|ZP_02701732.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|195629005|gb|EDX48397.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|159029103|emb|CAO90092.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 484

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 63/217 (29%), Gaps = 19/217 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
                + H++ +P+  +   L+ L          + + ++     +   I  L+ +    
Sbjct: 262 QFVGNVSHELRTPLTVVIGYLQSLQRRSTNLNPYQQQALETATAETERIIRMLQDLLDLA 321

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNL 122
                     +  +     L ++  + +        + ++     I   ++R  ++L+NL
Sbjct: 322 RADSGHLHFRSHPIILNTLLTEVAAMSQKVSDRKMTLLLTNEDVVICGDQDRLQQVLINL 381

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTID 177
              A         V + ++   +  +  +   G           F +    +  +  + D
Sbjct: 382 LDNAIKYSAPEQPVDLILEKQPSSALIHVCDRGIGISLSHQNRIFERFYRVDESMTRSRD 441

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L    + R+            + +L 
Sbjct: 442 GTGLGLAIAKSLIEGMEGRITLRSQPGQGSTFTIILP 478


>gi|309786603|ref|ZP_07681224.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
 gi|81240324|gb|ABB61034.1| sensor for ctr capsule biosynthesis [Shigella dysenteriae Sd197]
 gi|308925512|gb|EFP70998.1| sensor kinase protein rcsC [Shigella dysenteriae 1617]
          Length = 933

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|70725019|ref|YP_251933.1| signal transduction two-component sensor histidine kinase, VicK
           [Staphylococcus haemolyticus JCSC1435]
 gi|123762363|sp|Q4LAJ8|WALK_STAHJ RecName: Full=Sensor protein kinase walK
 gi|68445743|dbj|BAE03327.1| signal transduction two-component sensor histidine kinase, VicK
           [Staphylococcus haemolyticus JCSC1435]
          Length = 608

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +    + + R  +   I  +  +     
Sbjct: 378 FVANVSHELRTPLTSMNSYIEALEEGVWKDDNLAPSFLSVTREETERMIRLVNDLLQLSK 437

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNL 122
                + +        +  + I     +            S T        +  ++  N+
Sbjct: 438 MDNESEQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPSETIFTEIDPDKMTQVFDNV 497

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 498 ITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 557

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 558 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 596


>gi|170697003|ref|ZP_02888099.1| histidine kinase [Burkholderia ambifaria IOP40-10]
 gi|170138177|gb|EDT06409.1| histidine kinase [Burkholderia ambifaria IOP40-10]
          Length = 1026

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 56/246 (22%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L      A           + + H+I +P+ AI  +LEL++   +   + + +
Sbjct: 501 RKQAEEKLREAREAAEFANKAKSTFLATMSHEIRTPLNAIIGNLELMERAQMAAPLRRRL 560

Query: 54  RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97
                S+                        +   D    + ++  +             
Sbjct: 561 GTIMSSSDALLRVINDVLDLSKAESNQMALESIPFDLRRVVNEVAAIFRPLADAKSLVLT 620

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKI 153
            R+        +  +    +++ NL   A     RGG            +      ++  
Sbjct: 621 CRIAPDLANGYVGDATRLRQLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRCVEIAVSD 680

Query: 154 NGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G         T                    +       +       L  +       +
Sbjct: 681 TGIGIPEDGLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRLGEGTI 740

Query: 209 LSALLE 214
             A L 
Sbjct: 741 FVAALP 746


>gi|218780686|ref|YP_002432004.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762070|gb|ACL04536.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfatibacillum alkenivorans AK-01]
          Length = 533

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +     L  M+ + +L   I HD  + +  I  + EL    +       +++     S  
Sbjct: 296 QEEQLKLQQMESLGVLAGGIAHDFNNLLSLILGNAELVAVDMAPDDPNKKMLLNACESIE 355

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A      +         +   I +  + +   D +     ++V +              
Sbjct: 356 HARSLTGRLLTFSSGGAPLQEEINISQLIKQRADSLLAGSNIRVHYNMLPSIFPVSADVV 415

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLARFP 161
           +  +++ N+ + A  ++P GG + IS ++                   S    G      
Sbjct: 416 QIGQVVQNIVLNAKEAMPDGGDLKISAENVILEENNLLTLPPGAYVRISFSDTGPGISL- 474

Query: 162 EKFTQIVDGNVESTIDSH----DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E  ++I +    +          +     + +  ++   L  E   +   V   +L 
Sbjct: 475 ENRSRIFEPYFSTKTRGTQKGMGLGLATCLSIIKKHGGALSVESNPEKGAVFHVILP 531


>gi|57235028|ref|YP_180886.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57225476|gb|AAW40533.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 581

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 61/234 (26%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57
           + +++        +     + I H++ +PI ++    E L E    D  +    +     
Sbjct: 346 LVQDLSELRRLEKVRRDFVANISHELRTPISSLKLLTETLQEGAASDAAVAAGFIEKIHL 405

Query: 58  ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106
                            +  G          +         ++          + V    
Sbjct: 406 EVDKLAQLVTELSDLSAIESGQAVLNLQPGDISTAIKLAAARLSPQAERAGISLGVELPE 465

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
               +  +     ++L+NL   A    P+GG++ I  +      +  +  +G      + 
Sbjct: 466 TLPQVKLDENRIEQVLVNLVHNAIKFTPKGGRIKIGARTQGQILVVYVSDSGIGIPEDDL 525

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   +     +       +   +   +  E         S  L 
Sbjct: 526 TRVFERFYKVDKARSGGGTGLGLAISKHIVQAHGGNIWAESRYGKGATFSFSLP 579


>gi|17229208|ref|NP_485756.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135536|dbj|BAB78082.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1333

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 75/241 (31%), Gaps = 29/241 (12%)

Query: 1    MAKNICFNLSSMDLVA-----LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQ 51
            +A+      ++    A        S + H++ +P+ ++     LL     E    ++ ++
Sbjct: 932  LAQEQSARNAAE--AANHAKDEFLSILSHELRNPLNSMLGWANLLRTHQLEEVTVNQGLE 989

Query: 52   LIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             I  S+ +    +             +R+       +  +     + ++  +   +    
Sbjct: 990  AIERSAQAQNHLISDLLDVSRISSGRLRMDAQEVELIPVIEAAIAVVRLAAEAKNIQIET 1049

Query: 101  QVSWTGEKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            ++  T   +        +++ NL   A    P  G++ ++++ +  +    +K  G   +
Sbjct: 1050 KLDPTHTPMLGDPIRLQQVIWNLLSNAIKFTPTKGRIDVTLEYTYFQAQIQVKDTGAGIK 1109

Query: 160  FPE---KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALL 213
                   F +    +   T       +    V  L   +   +  E   +      +  L
Sbjct: 1110 ADFLPYVFERFRQADGTRTRSNQGLGLGLSIVRHLVELHGGTVEVESQGEGQGSTFTIKL 1169

Query: 214  E 214
             
Sbjct: 1170 P 1170


>gi|253575389|ref|ZP_04852727.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845386|gb|EES73396.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 457

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 62/224 (27%), Gaps = 19/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK-- 65
               L   L + I H++ +P+  I + +E   +       + +++     +  +  +   
Sbjct: 230 QQDQLRKNLTADIAHELRTPLATIQSHIEAFQDGVWEATPDKLEVCHGQVIRLVKLIHDL 289

Query: 66  ---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                     ++L       ++ +       +       +D  +Q          +    
Sbjct: 290 ENLSAVENPMLKLKQEPVRLLEVIRESKKTVKAQFSEKPIDLTIQEETPVVITGDAGRLI 349

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           ++ +NL   A+     G       + +      ++   G+     E    F +   G+  
Sbjct: 350 QVFVNLLNNAYKFTGEGSIYVRIFEAADQ-VNVTVSDTGSGIASDELPHIFERFYRGDKS 408

Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    I    V  +   +   +  E   +     +    K
Sbjct: 409 RNRKTGGAGIGLVIVKAIVEAHGGSIHVESKINQGTQFTLHFPK 452


>gi|239831142|ref|ZP_04679471.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG
           3301]
 gi|239823409|gb|EEQ94977.1| Phosphate regulon sensor protein phoR [Ochrobactrum intermedium LMG
           3301]
          Length = 430

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 66/240 (27%), Gaps = 30/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++    +    + +   +   H++ +P+ ++   +E L      +    D  + +++  +
Sbjct: 191 QSETRRID--RMRSDFIANASHELRTPLASLRGFIETLQGPARNDAAARDRFLDIMQKQA 248

Query: 58  MSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                 +              + +      +         +  +        +RV     
Sbjct: 249 ERMSRLIDDLLSLSRLEMRAHLTVNECVDMTSILNHVADTLAPLAAGLDINIERVLPDHP 308

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFP 161
                   E  ++  NL   A      G +V + + +       E + S++  G      
Sbjct: 309 VMVTGARDELIQVFQNLVENACKYGQAGKRVIVKLDEDDSGSSPEVVASIQDFGPGI-AA 367

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   ++ +                 +    V  +   ++ RL+           +  L K
Sbjct: 368 EHLPRLTERFYRIDVETSRAQKGTGLGLAIVKHILARHRGRLVVRSQLGEGSTFTVRLPK 427


>gi|200387245|ref|ZP_03213857.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|199604343|gb|EDZ02888.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|188581879|ref|YP_001925324.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179345377|gb|ACB80789.1| multi-sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 906

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 74/240 (30%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + + +      MD V  L   I HD  + + AI    +LL           + +  I+ +
Sbjct: 475 LEQQVAQT-QKMDTVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDHAFQDIMQIKQN 533

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
           +  A   ++ +            ++ +G+    +   +      +V              
Sbjct: 534 ANRAASLVRQLLAFSRRQTLRPEVMDVGEALSDLTLLLKRLLGERVQLDFRHGREIWPIK 593

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNL 157
               +  ++++NL + A  ++P GG +TI   +              +  +  +   G  
Sbjct: 594 ADVNQFEQVIVNLAVNARDAMPGGGSLTIRTANCPVAGERPVGIPAGDHVMIEVTDTGEG 653

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   +I +    +        +    V  + +++   +  +            L +
Sbjct: 654 I-PPEVRQKIFEPFFTTKEIGKGTGLGLSTVFGIVNQSGGAIDVQSTVGEGTTFRIYLPR 712


>gi|317476674|ref|ZP_07935918.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907137|gb|EFV28847.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 867

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/227 (7%), Positives = 55/227 (24%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59
               L +  L +   + + H+I +P+ AI    +LL +          + ++ I ++   
Sbjct: 636 RDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLEGFSSEEVQQFVETININCTL 695

Query: 60  AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GE 107
            +  +                   S +    +  +       +     ++  +       
Sbjct: 696 LLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVYDSQRLSMPQGVELRTDFPEGTGKS 755

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I  S    +++ NL   A     +G  +     +     +  ++  G+           
Sbjct: 756 MITDSVRLKQVVNNLINNAKKFTTKGYILLGYRVEDSGHTVIFVEDTGSGISDENLGHIF 815

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                         +       +       +               +
Sbjct: 816 ERFYKADNFTQGAGLGLSICQTIVERLNGTITVTSKLGKGTRFEVRI 862


>gi|194449893|ref|YP_002048158.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205359439|ref|ZP_02670061.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194408197|gb|ACF68416.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205336113|gb|EDZ22877.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|301052978|ref|YP_003791189.1| sporulation kinase B [Bacillus anthracis CI]
 gi|300375147|gb|ADK04051.1| sporulation kinase B [Bacillus cereus biovar anthracis str. CI]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALALITPLANLTNVRTHYIKQSTSFFITG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|229588671|ref|YP_002870790.1| putative two-component system sensor kinase [Pseudomonas
           fluorescens SBW25]
 gi|229360537|emb|CAY47394.1| putative two-component system, sensor kinase [Pseudomonas
           fluorescens SBW25]
          Length = 589

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 60/206 (29%), Gaps = 13/206 (6%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
            + H+I +P+G I  + +LL         +   ++ +          +            
Sbjct: 373 GLAHEIRNPLGIIKTATQLLHRRADLADTDKRHLEYVISEVSRINDLITEFLDFAKPNPP 432

Query: 77  VDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHA 128
           +  L     + + I  F        +    +        +  +  ++          A  
Sbjct: 433 LRVLQPARPLVEEILGFCAPELATHNIDAHIDDQAPGATIYADAKQLKQACLNLIINAID 492

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG++T+ ++   +  + S+   G      +   +I    V +      +    V  
Sbjct: 493 AMPEGGRLTLGIRTLDDTTVISIADTGQGI-PADMIERIFTPFVTTKASGTGLGLAKVYS 551

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +   +      D     S  + 
Sbjct: 552 IMESHDGSIECASEKDAGATFSLYIP 577


>gi|194471314|ref|ZP_03077298.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205358832|ref|ZP_02659463.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194457678|gb|EDX46517.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205331651|gb|EDZ18415.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +T+  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTITVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|251797174|ref|YP_003011905.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247544800|gb|ACT01819.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 549

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            K   F L S  L  V  L + + H+I +P+  +   L+L        +   L+R     
Sbjct: 316 KKAEEFLLQSEKLSIVGELAAGVAHEIRNPLTTLKGFLQLYKIENPTMKYGDLLRDELER 375

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             I    +        ++  ++ + D+       +    +  +      + G+   ++  
Sbjct: 376 IEIITSELLTMAKPQAAMYVVVNVKDVIEQTLEFLTPQTLLNNIEFIREYEGDYFPVTCA 435

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDG 170
           + ++      +   ++             + +     +  ++  G      E   ++   
Sbjct: 436 KHQLKQVFLNLLKNAIESMSNGGEIHISIQLDAAGECLIFIQDQGCGI-PEEHLHRLGQP 494

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  +   R++ +   D    +   L 
Sbjct: 495 FYSLKEKGTGLGLMISHKIIKQYHGRIVYDSKVDIGTRIEIRLP 538


>gi|47566227|ref|ZP_00237255.1| sporulation kinase [Bacillus cereus G9241]
 gi|47556780|gb|EAL15111.1| sporulation kinase [Bacillus cereus G9241]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 67/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      +E  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSNTCTEEERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEREQKLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++PRGG +  ++  +       +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPRGGDLYFTLVPNHKHIQLYIKDTGIGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|330880371|gb|EGH14520.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 586

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 347 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 406

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 407 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 466

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 467 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 525

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 526 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 577


>gi|229075093|ref|ZP_04208094.1| hypothetical protein bcere0024_24060 [Bacillus cereus Rock4-18]
 gi|228708024|gb|EEL60196.1| hypothetical protein bcere0024_24060 [Bacillus cereus Rock4-18]
          Length = 433

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++    +  M++V+ L + I H++ +P+  +    +LL          DE ++ I     
Sbjct: 208 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLSPESRDEYIEHILEELN 267

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSR 113
            A   +                I +          ++         +   ++   I  ++
Sbjct: 268 RAQEIIDDYLTFAKPAPEKLDHISIDQELNRAINMILPLCNMNTIHITKDFSKATIVGNK 327

Query: 114 ERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  +    NL   +  ++P GG + IS   S N+ I  ++ +G      E+  +  +   
Sbjct: 328 QHFQQCFLNLIKNSIEAMPNGGTLNISSTISNNKVIIRIEDSGIGM-SQEQINRFGEPYF 386

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +       L  +        L+    K
Sbjct: 387 STKSKGTGLGTMVAVKIIETMHGNLKIQSTVSKGTALTITFPK 429


>gi|225174413|ref|ZP_03728412.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170198|gb|EEG78993.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 558

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 56/227 (24%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            +  L +   + + H++ +P+ +I    ELL +        +             +    
Sbjct: 321 ENSRLKSEFMATMTHELRTPLTSIVAFCELLLDEIPGPINEEQQENLMDIKTSAQQLMLL 380

Query: 66  -------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                         +RL        D    +      I     V   V            
Sbjct: 381 INDILDMAKFEAGHLRLDKENVDLNDVFRAVRRTMSSIAYQNGVRLDVSAVDLPLVYGDP 440

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD 169
               ++L NL   A      GG V I  +        S++ NG+       P  F +   
Sbjct: 441 ERLRQMLSNLIANAVKHSKEGGYVHIYAKADNEFAAISVEDNGDGIPPELMPHIFEKFRQ 500

Query: 170 GNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G        +   +    V  LA      +            +  + 
Sbjct: 501 GEDSLKRRRNGTGLGLALVKTLAELQDGNISVNSEVGEGTTFTIHIP 547


>gi|186681657|ref|YP_001864853.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186464109|gb|ACC79910.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 572

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 69/235 (29%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           +AK    N+      + + + + H+  +P+ +I  +   L       +   +   + +I 
Sbjct: 330 LAKEKQLNVFK----SQIIATVSHEYRTPLTSILAAASTLAKHNQQLDESKQQRFLGIIE 385

Query: 55  LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             +                 +         +D L    D+ +   +       +    TG
Sbjct: 386 QKARYMSKLVDNMLLVNQFELEKPKFKPIPLDLLQFFADLIEQERETTGDRHELIFQITG 445

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                  +R    +I +NL   A    P GG V   +   ++E IF ++  G      + 
Sbjct: 446 HTQGFWGDRGLLQQIFINLMSNAIKYSPDGGTVEFHLIGKESEVIFYIQDRGIGIPIKDQ 505

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F     G+   TI    +           +   +           ++  L K
Sbjct: 506 ENLFQSFCRGSNVDTIPGTGLGLAIAKGCVELHGGDITLFSEVGQGTKVTVSLPK 560


>gi|302036059|ref|YP_003796381.1| hypothetical protein NIDE0686 [Candidatus Nitrospira defluvii]
 gi|300604123|emb|CBK40455.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 922

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
           +       +    L AL  + S I HD  + +  I    ELL        +     E +Q
Sbjct: 533 LKTTQQQMVQQERLRALGQMASGIAHDFNNTLSPIMGFSELLLIAPQMASDPAQLKEYLQ 592

Query: 52  LIRLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVD-------- 97
            I +++  A   +  +R  +         G VD    +    ++ +              
Sbjct: 593 TINMAAKDAAKVVSRLRDFYRPRLDADLAGIVDLNSLVQQSVKLSQPKWKDQALANGVAI 652

Query: 98  -KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
             + ++           E  ++L NL   A  ++P+ G +T+  +   +     +   G 
Sbjct: 653 EIKTELEPVPSVAGHESELREVLTNLVFNAVDAMPKSGSITLRTKVDGDAVRLEVSDTGT 712

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +             +    V  +    +  +            S  L 
Sbjct: 713 GMTEEVRQRCLEPFFSTKGEKGSGLGLAMVYGIIRRLRGTIDITSAVGVGTTFSIRLP 770


>gi|296185431|ref|ZP_06853841.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|296050265|gb|EFG89689.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 566

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 63/222 (28%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
            ++     + + H++ +P+ +I    E L  V       + + + +  A    + +    
Sbjct: 344 ENMRTQFVANVSHELKTPLTSIKGFAETLRYVDDFKNKEKFLNIINDEADRLTRLINDTL 403

Query: 72  GYTG----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAKI 118
             +            +D    + D+  ++++         ++   +  +    +    ++
Sbjct: 404 TLSHIESSIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGDKVPNLKGDNDRFKQM 463

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           L+NL   A       G V I  +   +  I  ++  G      E   +I +         
Sbjct: 464 LINLVDNAIKYSDNNGIVKIGTKLENDNCIIWVEDKGVGI-SKEHIDRIFERFYRVDKAR 522

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +  E            + 
Sbjct: 523 SRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 564


>gi|289651030|ref|ZP_06482373.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330987745|gb|EGH85848.1| sensory box histidine kinase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 982

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973


>gi|288561576|ref|YP_003428982.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548208|gb|ADC52090.1| two component system histidine kinase [Bacillus pseudofirmus OF4]
          Length = 464

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 62/221 (28%), Gaps = 26/221 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRL-AFGY 73
           + I H++ +P+  +    ++L E         ++ +++I   +      +  +   A   
Sbjct: 242 ANISHELRTPMTYLKGYSKVLREGRWKTEEERNQYLEIIDHEATRLTYLVDDLFDLAQME 301

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRERAKIL 119
            G  +      +I ++I+  +       +                    +       ++L
Sbjct: 302 EGRFNLEHKKVNINEIIKLVVKKTAYKALEQNLKIEYRGGLSDKDDSIVLGDPLRLEQVL 361

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVES 174
           +NL   A      G     +V +        ++  G      E    F +      +   
Sbjct: 362 INLVENAIKYTKEGSITIYTVSN-DENIKIKVRDTGIGMEEEELPYIFERFYRVEKSRSR 420

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  L   +   +  E         + +L K
Sbjct: 421 AFGGTGLGLSIVKQLIELHNGTIEVESTVGEGTEFTIILPK 461


>gi|283781072|ref|YP_003371827.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
 gi|283439525|gb|ADB17967.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
          Length = 461

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 55/226 (24%), Gaps = 22/226 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL-- 64
            +L   L + + H++ +P+ AI    E L      +  I    +  I   +      +  
Sbjct: 230 ENLRRELVANVSHELKTPLAAIKAYAETLRLGAVNDPEINLTFVHRIEEQAERLHELILD 289

Query: 65  ----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                     +                 L     + +          +            
Sbjct: 290 ILQIARVEAGQEAFEICDVPLHELIEECLAQFADLAQSKRVELIGPPIDQEIFVRGDEEG 349

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
              IL NL   A    P  G+VT+      +  +  ++  G      +    F +    +
Sbjct: 350 VRTILNNLVDNAIKYTPADGRVTVRCTIETSAVMLEVQDTGIGIAEKDQARVFERFYRVD 409

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    +    V  L+      +  +            L +
Sbjct: 410 KARSREMGGTGLGLSIVKHLSQALGGSVGLDSTIGKGSTFRVHLPR 455


>gi|255525673|ref|ZP_05392606.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|255510659|gb|EET86966.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
          Length = 561

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 63/222 (28%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
            ++     + + H++ +P+ +I    E L  V       + + + +  A    + +    
Sbjct: 339 ENMRTQFVANVSHELKTPLTSIKGFAETLRYVDDFKNKEKFLNIINDEADRLTRLINDTL 398

Query: 72  GYTG----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAKI 118
             +            +D    + D+  ++++         ++   +  +    +    ++
Sbjct: 399 TLSHIESSIENKEEEIDVNFIIKDVCCLVKNSAEKKNIKVLTIGDKVPNLKGDNDRFKQM 458

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           L+NL   A       G V I  +   +  I  ++  G      E   +I +         
Sbjct: 459 LINLVDNAIKYSDNNGIVKIGTKLENDNCIIWVEDKGVGI-SKEHIDRIFERFYRVDKAR 517

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +  E            + 
Sbjct: 518 SRAQGGTGLGLAIVKHIVMALNGNIRVESEIGKGSKFILEIP 559


>gi|117168588|gb|ABK32253.1| Amb5 [Sorangium cellulosum]
          Length = 508

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+++     +    A L   + HD+ +P+ A+  S+ +LD         V + + L   
Sbjct: 262 MAESLERQREAQ--FAFL-GGVAHDLRNPLSALRMSVHVLDLDSLPPASSVRRTMALVGR 318

Query: 59  SAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107
                 +     +  +      ++  +   D+  + ++ + + + V      E       
Sbjct: 319 QVDRLERMVGDLLDASQIEACKLELRVEERDLRDLAQEAVDLYRPVSPEHPIELSLPETP 378

Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +   A++L NL   A    P GG++ ++V+   +    +++  G      E   
Sbjct: 379 VLVPCDATRIAQVLNNLLSNALKYSPAGGQIDVAVRAGGDGAEIAIRDRGLGIEPAEL-A 437

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + +          +I    +       +   +  RLL E       V    L +
Sbjct: 438 HLFEPFRRLKSSSGSIPGTGLGLTVAKRIVEAHGGRLLVESRPGAGSVFRIDLPR 492


>gi|116255423|ref|YP_771256.1| putative transmembrane two-component sensor histidine kinase
           transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115260071|emb|CAK03170.1| putative transmembrane two-component sensor histidine kinase
           transcriptional regulator [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 626

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQL-------- 52
              +L+       L S I H++  P+ AI N+ E    LL     + E++Q         
Sbjct: 388 EAVHLNQSATAGALSSSIAHELNQPLSAIRNNAEAASVLLRSEKPDHELIQQILLDIQED 447

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----E 107
            + +          ++           L  +      I    A  + ++++ T       
Sbjct: 448 DQRAGDIISRMRGLLKKRNEIDWQEFDLNDVTSSAIHIIHGEAERRGIKLTSTQLPGKLP 507

Query: 108 KIDLSRERAKILLNLFMV----AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +++LNL          +LP G  +T +   +  +    +   G+     E+
Sbjct: 508 VRADKVHVQQVILNLATNAMDSMLDALPAGRTLTFATGLANEKVELRVSDTGDGI-PKER 566

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I +    +      +       +       +  +   +   V    L 
Sbjct: 567 LNSIFEPFYTTKQAGTGLGLSIARAIVETYGGTICADNRPEGGAVFRVALP 617


>gi|91201643|emb|CAJ74703.1| hypothetical protein kuste3940 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 637

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 64/230 (27%), Gaps = 22/230 (9%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII 62
              + S  L A+  L +   H++ +P+  I    EL L++    ++ ++ ++        
Sbjct: 404 NQVVQSERLFAVSNLVAGAAHELNNPLAGIQLCTELVLNDPATSEKSLKYLQRIQKETEQ 463

Query: 63  RL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                         +         +    + +       +        +           
Sbjct: 464 IQDVVKSLLTFTGNYTLSKEQININEIIEVIIKQKIYQFDHANIKIIILPGDVLPFVFVD 523

Query: 112 SRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +  ++LLN+   A A++        +TI  +   N     +   G      E  ++I 
Sbjct: 524 KYQIRRVLLNIIENACAAMEVSAYDKCLTIKTEAQNNVVKTYISDTGPGI-PKENLSKIF 582

Query: 169 DGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +  +       +       +  ++  ++  +            L 
Sbjct: 583 EPFYTNRANKKKKGTGLGLSIAHSIIKQHNGKIYVQSEVGKGTTFVIELP 632


>gi|71735260|ref|YP_273139.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555813|gb|AAZ35024.1| sensory box histidine kinase [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 982

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973


>gi|322832015|ref|YP_004212042.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
 gi|321167216|gb|ADW72915.1| integral membrane sensor hybrid histidine kinase [Rahnella sp.
           Y9602]
          Length = 953

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 75/240 (31%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL   G+   V +L+   
Sbjct: 456 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQGLPQGVDRLVTAM 515

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 516 NNSSALLLKIISDILDFSKIESEQLKIEPQEFSCREVITHIAGNYLPLVVKKRLGLYCFI 575

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + +             +++ N+   A       G + ++V+   N   F ++  G     
Sbjct: 576 EHNVPLSFNGDPVRLQQVISNILNNAIKFTDT-GCIVLNVRTCGNYLEFQVRDTGVGIPE 634

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  E         +  + 
Sbjct: 635 REIT-RLFDPFFQVGTGVQRHFQGTGLGLAICEKLINLMDGDIEVESEPGLGSSFTVRIP 693


>gi|319900835|ref|YP_004160563.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319415866|gb|ADV42977.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 375

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 63/233 (27%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + +      ++    ++  + + H+I +P+ AI    ELL        + + + +++ ++
Sbjct: 142 LRQAREKAENADRSKSVFLANMSHEIRTPLNAIVGFSELLASASSEEEKAQFLGIVQNNN 201

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 +             +   F        +  L    ++         +V      
Sbjct: 202 EMLQQLIADILDLSKIEAGTLEFVFSDIDINQLMSDLEQQFRMRLKEQGSAVQVIRETPP 261

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           E   +  +R    +++ N    A      G        +      F +K  G+     + 
Sbjct: 262 EGCVMHMDRNRLAQVIANFMTNAMKFTDEGSITLGYRTNEDGF-YFYVKDTGSGIPKEKL 320

Query: 164 FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            T        E       +       +  +   ++  +            L +
Sbjct: 321 PTIFDRFVKLEQEKKGTGLGLSICQTIVSKLGGKIGVDSEVGKGSTFWFTLPR 373


>gi|311030784|ref|ZP_07708874.1| two-component sensor histidine kinase [Bacillus sp. m3-13]
          Length = 469

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 63/222 (28%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +N+      M+ V+ + + + H++ +P+  I   ++L        +    I         
Sbjct: 242 ENLLVYKQQMESVSQISAGMAHELRNPLSVIKGFIQLSQITNNWSKYYDTIMAEINRMNS 301

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------R 115
            ++              +      + ++  F +      + +  E  ++  +        
Sbjct: 302 IIEDFLSVSRKKVKKQLIEPQYIFQSLVYIFQSECLLHNIDFDFEIEEVDEQVLVNEAMI 361

Query: 116 AKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +++LN    A  +     K     +  + S      ++  NG      +   +I     
Sbjct: 362 KQVMLNFLRNAIEAFSPEQKNKLFLLRAKKSDTFYEITVVDNGKGM-AEDVLDRIGKPFF 420

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    + +       +  ++   L  +            L 
Sbjct: 421 TTKEKGNGLGIPLCKKIIEDHDGELFIDSKLGEGSTFCYRLP 462


>gi|284034896|ref|YP_003384827.1| histidine kinase [Kribbella flavida DSM 17836]
 gi|283814189|gb|ADB36028.1| histidine kinase [Kribbella flavida DSM 17836]
          Length = 618

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 69/235 (29%), Gaps = 27/235 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVG 44
           MA++I  +         + S + H++ +P+  I   L                 LL+E G
Sbjct: 388 MAESIQQHDHQRKA---MVSDVAHELRTPLANIKGYLVASEDGVVPLDRELVTSLLEETG 444

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +   + +L+      A+     +RL        +    +    +   +   V        
Sbjct: 445 L---LERLVADLQDLALADAGMLRLHPAPRDLAELAGQVVAAHRPAAEAAGVRVSAAADS 501

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161
               I  S    + L NL   A    P GG V + V+   ++ + ++  NG+       P
Sbjct: 502 PAPAIVDSARIRQALGNLVSNAIRFTPAGGHVVVGVRRDGDDYLLTVSDNGSGIDAEHLP 561

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +        +       +       L   +   +            +  L 
Sbjct: 562 HLFDRFYRAEHSRSRATGGSGLGLAITKHLVEAHHGTITVTSHPGDGSTFTIRLP 616


>gi|300021836|ref|YP_003754447.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523657|gb|ADJ22126.1| multi-sensor signal transduction histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 428

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 59/240 (24%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           +      ++++     +   H++ +P+ ++   +E L      +    D  ++++   + 
Sbjct: 188 DESEQHRALEMRTDFVANASHELRTPLASVRGFIETLQGPARNDEVAHDRFLKIMAEQAE 247

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK- 108
                +  + L        +                   +          + V       
Sbjct: 248 RMTRLIDDLLLLSRVEEKANLNPTGQVRLSELLNEVVRALTPVSEERQITITVEPESSPL 307

Query: 109 --IDLSRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  E  ++  NL   A          +          SK     ++  +G     P
Sbjct: 308 VAKGERDELFQVFHNLIENAVKYGRVGGSVKVHLRESERDPSKKRVAVTVTDDGPGI-AP 366

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   ++ +            I    +       +   ++  L  + +          L K
Sbjct: 367 EHLPRLTERFYRVSTEHSRRIGGTGLGLAIAKHILTRHQGELSVDSVVGRGTTFKVSLPK 426


>gi|229012419|ref|ZP_04169594.1| hypothetical protein bmyco0001_28630 [Bacillus mycoides DSM 2048]
 gi|228748778|gb|EEL98628.1| hypothetical protein bmyco0001_28630 [Bacillus mycoides DSM 2048]
          Length = 801

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATAMAHEINNPLTAMKGFMQLLKSTETENNRGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +G +       +    +  + ++++ +T +   +  
Sbjct: 632 RIESITNEFMAVAKPQVVKIQPNDIGVLMDQVLTLLQPQAMMNNIQIRIDFTPDIPLIPC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++         +        N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPTGGEILIQFDKLDHNQIRIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMVCYKIIETHQGKVFIESDVNKGTIVEVTLP 795


>gi|157144825|ref|YP_001452144.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Citrobacter koseri ATCC BAA-895]
 gi|157082030|gb|ABV11708.1| hypothetical protein CKO_00552 [Citrobacter koseri ATCC BAA-895]
          Length = 948

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + VQ   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCDGDYLSIQVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|54301740|ref|YP_131733.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum SS9]
 gi|46915160|emb|CAG21933.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum SS9]
          Length = 971

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 59/243 (24%), Gaps = 32/243 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            + +   L   +      +   + + H+I +P+  +    +LL +  +  E    +    
Sbjct: 389 TQRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKTDLTQEQRHHLLTLL 448

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQ 101
            S    +  +     ++        L      I D +                    +  
Sbjct: 449 DSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKGLDFSIQCH 508

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
                          +IL N+   A     +G               + + I + +  G 
Sbjct: 509 FDSNSWFFADKSRIRQILFNVINNAIKFTDKGEVRVSLNQGQCDNPKERKLIITAQDTGI 568

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                ++  QI D                 +    V  LA+     +  E         +
Sbjct: 569 GI-AEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVRQLANLMNGDIQLESAYGKGSTFT 627

Query: 211 ALL 213
             L
Sbjct: 628 ITL 630


>gi|325284510|ref|YP_004257049.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus proteolyticus MRP]
 gi|324316684|gb|ADY27795.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus proteolyticus MRP]
          Length = 365

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 53/214 (24%), Gaps = 17/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SSMSAIIRL-------K 65
           L   + H++ +P+ A+    + + +  +  E                             
Sbjct: 148 LIGNVAHELRAPLAALQGYADAMQDGVMTSEHAARAISREVGAMDRLVRDLSLVSKVEAG 207

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            M L        + L    +      +   V   V+V+             ++L NL   
Sbjct: 208 KMELYSITMSPQELLEAAQERFMPFFEDKGVTLVVEVAPLPLLWADKERSLQVLANLLSN 267

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTIDSHD 180
           A    P  G+VT++ +       F +   G+       P  F +                
Sbjct: 268 ALRHTPPRGQVTVTAKTQGRAVRFMVADTGSGISGEHLPRIFERFYRADPARSRGEGGSG 327

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L       +  +         +  L 
Sbjct: 328 VGLTISRGLVEAMGGEIEVDSTPGKGSTFAFTLP 361


>gi|307822986|ref|ZP_07653216.1| osmosensitive K channel signal transduction histidine kinase
           [Methylobacter tundripaludum SV96]
 gi|307735761|gb|EFO06608.1| osmosensitive K channel signal transduction histidine kinase
           [Methylobacter tundripaludum SV96]
          Length = 914

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 58/232 (25%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     + S  L   L S I HD+ +P+ +I  +   L E   +        LS     
Sbjct: 667 AQQTQLRMESETLRNSLLSAISHDLRTPLASIVGAASTLVEEDAQLAPPDRQELSLTIYD 726

Query: 62  ----------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                          +D +IG             V         
Sbjct: 727 EALRMSNLTNNILDMARLDAGQASLNRQWYPLDEIIGGTLTRMHKRLEGRVINTKLPDDL 786

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                 +    ++L+N+   A    P G  + I  + S +    ++   G      E   
Sbjct: 787 CLVRVDAVLIEQVLVNILENACKYTPTGSPIDIIAEISAHMLKVTVADRGPGIPPGEEEK 846

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    + E T     +       +   +   +              LL 
Sbjct: 847 LFDKFYRVHREGTQSGVGLGLAICKAIIIAHGGVIGAANRLGGGAQFFFLLP 898


>gi|301309591|ref|ZP_07215533.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
 gi|300832680|gb|EFK63308.1| probable two-component system sensor histidine kinase [Bacteroides
           sp. 20_3]
          Length = 768

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           + K       +  + +   + + H+I +P+ AI    ELL  ++ I              
Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589

Query: 60  AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
               L  +                    + D    L  I +  +  +     +++     
Sbjct: 590 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649

Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +     +++ NL   A     +    +       K     S+   G      ++
Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  N          +      ++       +  E  +         L 
Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|298376091|ref|ZP_06986047.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298267128|gb|EFI08785.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 757

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           + K       +  + +   + + H+I +P+ AI    ELL  ++ I              
Sbjct: 519 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 578

Query: 60  AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
               L  +                    + D    L  I +  +  +     +++     
Sbjct: 579 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 638

Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +     +++ NL   A     +    +       K     S+   G      ++
Sbjct: 639 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 698

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  N          +      ++       +  E  +         L 
Sbjct: 699 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 750


>gi|262383487|ref|ZP_06076623.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262294385|gb|EEY82317.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 768

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           + K       +  + +   + + H+I +P+ AI    ELL  ++ I              
Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589

Query: 60  AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
               L  +                    + D    L  I +  +  +     +++     
Sbjct: 590 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649

Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +     +++ NL   A     +    +       K     S+   G      ++
Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  N          +      ++       +  E  +         L 
Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|256841370|ref|ZP_05546877.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737213|gb|EEU50540.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 768

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           + K       +  + +   + + H+I +P+ AI    ELL  ++ I              
Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589

Query: 60  AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
               L  +                    + D    L  I +  +  +     +++     
Sbjct: 590 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649

Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +     +++ NL   A     +    +       K     S+   G      ++
Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  N          +      ++       +  E  +         L 
Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|255014411|ref|ZP_05286537.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 768

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           + K       +  + +   + + H+I +P+ AI    ELL  ++ I              
Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589

Query: 60  AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
               L  +                    + D    L  I +  +  +     +++     
Sbjct: 590 NSDLLLKLINDILDLSRIESGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649

Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +     +++ NL   A     +    +       K     S+   G      ++
Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  N          +      ++       +  E  +         L 
Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|150008613|ref|YP_001303356.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937037|gb|ABR43734.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 768

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 57/232 (24%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           + K       +  + +   + + H+I +P+ AI    ELL  ++ I              
Sbjct: 530 LIKARIRAEEADQMKSAFLANMSHEIRTPLNAIVGFSELLTSDMEISPNERDEFMQVISK 589

Query: 60  AIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
               L  +                    + D    L  I +  +  +     +++     
Sbjct: 590 NSDLLLKLINDILDLSRIKSGKMSFTLTNCDLNELLSHIYRTHQLLMPQGVALKIQLPVL 649

Query: 108 KIDLSRERA---KILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +  +     +++ NL   A     +    +       K     S+   G      ++
Sbjct: 650 PAIIQADLHRLTQVITNLINNAAKFTTQGYILIKYDYTQDKRWIQISVTDTGKGIPADKQ 709

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  N          +      ++       +  E  +         L 
Sbjct: 710 AQVFERFNKLDEFAQGTGLGLAICQIIIEHFGGYITLESKEGEGSTFIVTLP 761


>gi|147676435|ref|YP_001210650.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
 gi|146272532|dbj|BAF58281.1| signal transduction histidine kinase [Pelotomaculum
           thermopropionicum SI]
          Length = 356

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 63/224 (28%), Gaps = 17/224 (7%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRLS 56
                + L+  +   I H I +P+ A+   ++++ E                 ++ +   
Sbjct: 124 IRNEKIKLIKQMSIGIAHHIRNPLTAVRGFIQIMREKSGGDCVTGFNEFTSIALKELDRV 183

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLS 112
           +      L     +     +V+    L ++   I+   A+   + V              
Sbjct: 184 NEVIGNLLLLADSSELKREAVNVNNLLKNVLFFIKGKAALSGIIVVEELSPDLPSVFVNQ 243

Query: 113 RERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +   +L N+   A   +P     K+      ++++    +   G          +I + 
Sbjct: 244 VQIVHVLFNILDNAIKFMPDGGRLKLRSYTVPAESKVCIEVSDTGAGIPPANIN-KIFNP 302

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  D           + H++   +     +         L 
Sbjct: 303 FFTTREDGMGFGLALANKIIHDHGGEIRVGSEEGKGSTFFVYLP 346


>gi|29347433|ref|NP_810936.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339333|gb|AAO77130.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 720

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 53/239 (22%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQ 51
            K +   L            L +   + I H+I +P+ AI     LL   E GI +E  +
Sbjct: 474 RKEMEEALVQAKVKAEEANTLKSSFLANISHEIRTPLNAIVGFSSLLVSAERGISEEKQE 533

Query: 52  LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--- 97
            I +   +  +                         +D      ++E             
Sbjct: 534 YINIIENNNTLLLQLISDVLDLSKIEAGTMEFDYAPIDVHGLFIELEDTFRLRNKKSGIC 593

Query: 98  -KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
               + +             ++++NL   A      G               F +   G 
Sbjct: 594 ICYHRRTTECVVKADRNRLVQVMMNLMNNAVKFTGEGSIEFGFDVREDGFLHFYVTDTGC 653

Query: 157 LARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +     S +    +       +      ++               L 
Sbjct: 654 GIPEERLEEIFGNFVKLNSFVQGTGLGLTICRAIVERMGGKIGAVSRLGQGSTFWFTLP 712


>gi|319938298|ref|ZP_08012695.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319806591|gb|EFW03249.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 464

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+ +       +      S + H+  +P+ AI     +L    +     Q      +  
Sbjct: 215 MAQQLA---KQEETRQQFISDVSHEFQTPLTAIQGFATILKNEELPLVQRQKYADIILFH 271

Query: 61  IIRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             RL  +         +D                    IE      ++ +  ++      
Sbjct: 272 SKRLSTLSKNMLQLTILDGEDVKLETSEFSLIEQLSRVIETQDNLALSKNIEIEFQLPKN 331

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
            I +  +     ++ +NL   A       G VTISV+ S  E   +++  G         
Sbjct: 332 DIRIEADESRLEQVWINLVNNAIKYTNENGVVTISVKKSSKEVEVTIEDTGVGMSKEAIS 391

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +   +I+ + +    V  +   ++  +  +  +D        L 
Sbjct: 392 HIFERFYRQDKSRSIEGNGLGLSIVKRIIDLHRGTIDVKSREDGGSKFIIRLP 444


>gi|260427270|ref|ZP_05781249.1| histidine kinase [Citreicella sp. SE45]
 gi|260421762|gb|EEX15013.1| histidine kinase [Citreicella sp. SE45]
          Length = 637

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---L 55
           +A        +  + AL  L + + H++ +P+  +     +L +  I D+V + +     
Sbjct: 261 LAAQREQIFQAEKMSALGELLAGVAHELNNPLSVVVGHALMLRDEEISDDVRRRVEKISD 320

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKID 110
           ++      +K          +      +       ++ +      +   V +    +  +
Sbjct: 321 AAERCARIVKSFLAMARQQPTRLVPTDIAETVLMAVDALRNGADGLGAEVDLQIAPDLPN 380

Query: 111 LSRERAKILLNLFMVAHAS--------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +  +  ++   +  +   +              + +S           +  NG      E
Sbjct: 381 VRGDAHQLSQLVINLVTNADQAIRDSGTGDTIGIALSHDAGAQMVELRVTDNGPGI-PQE 439

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++I D    +        I       +A  +  R+           L   L 
Sbjct: 440 IRSRIFDPLFTTKPVGSGTGIGLALCHRIATAHAGRIALAETSGPGTTLVVRLP 493


>gi|294678067|ref|YP_003578682.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
 gi|294476887|gb|ADE86275.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
          Length = 877

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLI 53
            ++   +   ++ V  L   I HD  + +  I  +L +L              +  +   
Sbjct: 526 TQSQLLHAQKLETVGQLTGGIAHDFNNILAVIIGNLNILARELVETPALKARAERGLSAA 585

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++      L F R       +VD    +  +  +++  +    R+      +   +  
Sbjct: 586 NRAAGLINRLLTFSRRQRLAPENVDLNGLVRGMLDLMQSSLGSGMRITPDLAADLPRVRV 645

Query: 114 ERAKILLNLFM---VAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           +  ++   L      A  ++        I+ + +      ++   G     P+   Q+ +
Sbjct: 646 DPGQLENALMNLAVNARDAMEGAGEITVITRRAADGFVELAVADTGAGI-PPDLLEQVFE 704

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +        +    V     ++   +  E        +S  L 
Sbjct: 705 PFFTTKPVGKGSGLGLSMVYGFVRQSGGTVTIESAPGAGTRVSLRLP 751


>gi|317128931|ref|YP_004095213.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bacillus cellulosilyticus DSM 2522]
 gi|315473879|gb|ADU30482.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
            [Bacillus cellulosilyticus DSM 2522]
          Length = 1071

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 74/224 (33%), Gaps = 11/224 (4%)

Query: 2    AKNICFNLSSMD--LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
             K       +    +V+ L +   H+I +P+  I   ++LL    I+ +   +I      
Sbjct: 838  RKTEELLQKNHKQVVVSELAAGFAHEIRNPLTTIKGFIQLLKNKTIKQKYYDIIIQEFEH 897

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDL 111
                 +          +V     +  +   +E+  +   +++                  
Sbjct: 898  VESITRDFISLTKPKSNVMLHANVNQVLFNLENSFSKLAKIRNITLTIEVADNVSTIYCD 957

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
              +  ++L++L   +  +L  GGK+ + V +     +F++  NG      E+  ++ +  
Sbjct: 958  IEQIKRVLIHLIQNSFDALQNGGKILLQVIEDNTFTVFTVIDNGVGM-SQERVQKLGEPY 1016

Query: 172  VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     +       +  E+   +  +  ++    +   + K
Sbjct: 1017 FSIKEKGIGLGLMLCYQIIREHNGTINVKSKENVGTNVEIKIPK 1060


>gi|269968582|ref|ZP_06182584.1| sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|269826793|gb|EEZ81125.1| sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 679

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 63/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           + +     +    L AL  L + I H+I +P   I  ++EL+     D+     E +  I
Sbjct: 433 LNQTRDKLVVHEKLAALGELTAGIAHEINNPTAVILGNVELIHFELGDDASRVQEEIDAI 492

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +       V+    +  
Sbjct: 493 HAQIDRIRNITRSLLQYSRQGGVQDEITWQHVNPIIDESITLVKTGTKKRDVEFVTDLQA 552

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                       +IL+NL M A  ++   G           +         +   G    
Sbjct: 553 HTSVEINRHHLLQILVNLQMNAIHAMSGKGTLTVVSEDWIEEGEVKGAAIHVIDEGCGI- 611

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            PE  ++I      +  +   +       +  +    L  E         S  L K
Sbjct: 612 KPENLSRIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGTGSKFSIYLPK 667


>gi|149189433|ref|ZP_01867718.1| signal transduction histidine kinase [Vibrio shilonii AK1]
 gi|148836791|gb|EDL53743.1| signal transduction histidine kinase [Vibrio shilonii AK1]
          Length = 674

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
           + +     +++  L AL  L + I H+I +P   I  ++EL+      +V   +E + +I
Sbjct: 430 LNQTRNKLVTNEKLAALGELTAGIAHEINNPTAVILGNVELMRFELGSDVSRVEEEIDVI 489

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                      + +       G  D          + +   ++           +     
Sbjct: 490 LAQIDRIRNITRSLLQYSRQGGVQDEVTWQHVNPIVDESVTLVRTGAKKRDVEFIVDLNA 549

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI--------FSLKINGNLAR 159
           K  +   R ++L  L  +   ++            +++             +   G    
Sbjct: 550 KTPVEVNRHQLLQILVNLQMNAIHAMQGKGRLTVLTEDWVEAGQSIGSLIHVIDEGCGIS 609

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +I D    +  D   +       +  +    +  +         +  L 
Sbjct: 610 DANIK-RIFDPFFTTKRDGTGLGLSVSQSILSQTGGEIRVKSKLGEGSQFTLYLP 663


>gi|197121353|ref|YP_002133304.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196171202|gb|ACG72175.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 530

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 61/221 (27%), Gaps = 19/221 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKF 66
            +L + L S + HD+ +P+ AI  +  LL + G+ D  ++          +      +  
Sbjct: 288 EELRSGLLSSVSHDLRTPLAAITGAATLLLDDGVNDPAIRRDLAATVVDEAERLERLVSN 347

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RA 116
           +       G              +           ++     + +  E            
Sbjct: 348 LLDMTRLEGGAVEPKREWVPLTEVVGAAMNRLERPLAGRPVAVAIPDELPLLSVDPILVQ 407

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-- 174
           ++ +NL   A    P G ++ +            +   G      E+  +I +    +  
Sbjct: 408 QLFVNLLENATKHTPPGSEIAVRAVREGGTVAIEVADRGPGLPEGEE-ERIFERFQRAAR 466

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +       +A  +  RL          V    L 
Sbjct: 467 PGVRGVGLGLPIARAIAQAHGGRLTAANRASGGAVFRLTLP 507


>gi|158321803|ref|YP_001514310.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158142002|gb|ABW20314.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 607

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 74/237 (31%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           + +++       ++     + + H++ +P+  I +  E L +       +    +Q++  
Sbjct: 360 LLQDVTSAQKLENMRKEFVANVSHELKTPLTTIKSYTETLLDGVLENTELATSFLQVVDG 419

Query: 56  SSMSAIIRLKFMRL--------AFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTG 106
            +      ++ +          +      V+    +   I ++        + +      
Sbjct: 420 EAERMARLVRDLLQLSNLDYKKSNWNKKEVNLNEIIENSILKIDVSAKNKAQEIITHLQD 479

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           E + +  ++    +++LN+   +    P GG++ + +   +      ++  G      + 
Sbjct: 480 EPVHIYADKDRIEQVILNILSNSIKYTPEGGRIIVDLIVDEGVVTLKIRDTGIGIPKEDI 539

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +            +    +       +   ++  +     + H   +   L 
Sbjct: 540 -ARIFERFYRVDKARSREMGGTGLGLSIAKQIIEAHEGTIEIFSEEGHGTEVHTKLP 595


>gi|42782720|ref|NP_979967.1| sporulation kinase A [Bacillus cereus ATCC 10987]
 gi|42738646|gb|AAS42575.1| sporulation kinase A [Bacillus cereus ATCC 10987]
          Length = 510

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   V+   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500


>gi|108763401|ref|YP_634188.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108467281|gb|ABF92466.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 485

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           MA+ +     +  L     + + HD+ +P+ A+  S ++L             + +  I 
Sbjct: 254 MAETVASQ-DARQL--QFLAGVAHDLRTPLNALKLSAQMLLRAKTAPPPEKVRDSLVRIS 310

Query: 55  LSSMSAIIRLKFMRLAFGYT----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                    +  +                   + +L+                +      
Sbjct: 311 NQVDRLERMVGDLLDRTRIEAGNLELRLEECDLRALVEEVVELHRPSSEHHRLEYSVPDS 370

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  S   +++L NL   A    P GG V++ ++ S+ +   S+   G      +  
Sbjct: 371 PVPWRCDSTRLSQVLTNLVSNAIKYSPEGGVVSLRLESSERDVSVSVTDEGVGIPPDDLG 430

Query: 165 TQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           T              I    +       +A  +   +  E +          L +
Sbjct: 431 TLFEPFKRSRTAAKDIPGVGLGLSVSRRIARAHGGDIEVESVVGTGSTFRLRLPR 485


>gi|320161442|ref|YP_004174666.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995295|dbj|BAJ64066.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 443

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           MA ++     +      + + I H++ +PI      LE L +            V+    
Sbjct: 211 MANSLE---RAEKNRKAMTADIAHELRTPIAVQRAHLEALQDGIYPLTPENLQPVLDQTE 267

Query: 55  LSSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             +               ++   +       +     E+   +  A    +Q+      +
Sbjct: 268 FLARLVEDLRVLALADAGQIPLEFREIAPLDLVRRIYERFRPEADAKSISLQIVDETSGM 327

Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                   R   +IL NL   A    P GG++T+ V    N   F ++  G      +  
Sbjct: 328 RLSIQGDERRIEQILNNLMSNALRFTPEGGRITLRVSQQGNMLAFMVEDTGPGISPEDLP 387

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN   + +   +       LA  +   L      +     +  L 
Sbjct: 388 FIFERFYRGNRNQSSEGTGLGLAIARQLALAHGGTLEAANRPEGGAKFTLSLP 440


>gi|300087613|ref|YP_003758135.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527346|gb|ADJ25814.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 368

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 72/233 (30%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
           M +N+        LV+L  + S + H++ +P+  I    +LL             ++L+ 
Sbjct: 131 MEENLIVT---DRLVSLGEMASGLAHEVNNPLTGIMGFTQLLLTDPRMPEALKGDLELVN 187

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108
             +  A   ++ +             + + ++   +      + R++     ++      
Sbjct: 188 GEAHRAAEIVRKLLNFARGGAKSVEPVDVNEVLLNVVRLREYELRIKNIEVEKRLTLALP 247

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163
                  E  ++ +NL + A   + R           +D+       +  +G      +K
Sbjct: 248 AVKADQMELQQVFINLIINAEYFMYRDHHGGNLRLETRDNNGWVTVVVADDGPGI-PEDK 306

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T I    + +        +       + +    R+  E  ++        L 
Sbjct: 307 LTHIFTPFITTKEVGQGTGLGLSICRGIINRFGGRIRAENNENGGARFVVDLP 359


>gi|308233470|ref|ZP_07664207.1| integral membrane sensor signal transduction histidine kinase
           [Atopobium vaginae DSM 15829]
 gi|328943478|ref|ZP_08240943.1| sensor histidine kinase [Atopobium vaginae DSM 15829]
 gi|327491447|gb|EGF23221.1| sensor histidine kinase [Atopobium vaginae DSM 15829]
          Length = 527

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 70/235 (29%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA  +  ++        L S + H++ +P+ A+  ++E + +     ++E  + +     
Sbjct: 287 MASELERDIKFEH---RLTSDVAHELRTPLMAMLATVEGMQDGVLPADNEHYETVAQEVR 343

Query: 59  SAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                +  M                       V SL+ + +      +            
Sbjct: 344 RLSRLVDAMLRLSRIENGTRALKIEKSDAVYMVKSLVSMQEQLFAERNLRLKFDDKIPEH 403

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                  S    + + N+   A    P GG V +S+  S+NE + S++  G      +  
Sbjct: 404 ECMIEMDSDLIREAITNIMSNAMRYTPAGGWVIVSISKSRNEVLISVRDTGIGIAKEDIP 463

Query: 164 --FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +  ++  R+  E         +  + 
Sbjct: 464 RVFARFWRSDASRGRVSGGLGIGLALTKEIIDKHNGRIAVESTLGKGTTFTLAIP 518


>gi|187479177|ref|YP_787202.1| two component sensor kinase [Bordetella avium 197N]
 gi|115423764|emb|CAJ50315.1| two component sensor kinase [Bordetella avium 197N]
          Length = 922

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 61/230 (26%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++   N+ S  L   L + + HD+ +P+  +    E L     +  V +        A 
Sbjct: 681 AQHALLNVESEKLRNSLLAAVSHDLRTPLTGLIGMTETLARSATDAAVQEQANAIRDQAR 740

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI------------ 109
              + +               L    Q +E+                             
Sbjct: 741 RMHRMVVNLLDMARLQSQGTPLKREWQSVEELAGAALANMRETLRGHQVRVLPLSELPLV 800

Query: 110 -DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFT 165
                   ++  NL   A    P GG +T+  + S +    S+   G           F 
Sbjct: 801 ECDGMLIERVFCNLLENAAKYSPEGGTITLEGRVSDDALQVSVSDQGPGVAPGSEDRIFQ 860

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
           +   G  ES +    +       +   ++ R+  E             L 
Sbjct: 861 KFTRGERESALPGVGLGLSVCRAIVQAHQGRIWVEPAPGGQGARFIFELP 910


>gi|161830507|ref|YP_001596306.1| hypothetical protein COXBURSA331_A0472 [Coxiella burnetii RSA 331]
 gi|161762374|gb|ABX78016.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii RSA 331]
          Length = 252

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 56/228 (24%), Gaps = 24/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFM 67
               + +   + + H++ +P+  I   LE L +          ++ +     +      +
Sbjct: 23  QLERIRSDFVANVSHELRTPLTVIRGYLETLLKKEVRDSKSYQKIFQQMYQHSTRMETII 82

Query: 68  RL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                                    + L  L    + I        +++           
Sbjct: 83  DDLLLLSRLESDDHPTEEKMNVAVPEILKTLCADAERISGEKQHFIQLKAEPNLYISGSE 142

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            E   +  N+ + +    P  G++ +      +  +FS+   G          +I +   
Sbjct: 143 EELKSLFSNIIINSVKYTPSKGRINVKWYRDDDHAVFSVVDTGIGIAKVHIP-RITERFY 201

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +    V  +   +   L  E       + +    
Sbjct: 202 RVDKARSRESGGTGLGLAIVKHVLMRHDGELHIESEPGKGSIFTCRFP 249


>gi|330977387|gb|EGH77336.1| sensory box histidine kinase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 494

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 255 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 314

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 315 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 374

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 375 GDSQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 433

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 434 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 485


>gi|167634448|ref|ZP_02392769.1| sporulation kinase B [Bacillus anthracis str. A0442]
 gi|254682498|ref|ZP_05146359.1| sporulation kinase B [Bacillus anthracis str. CNEVA-9066]
 gi|254740396|ref|ZP_05198087.1| sporulation kinase B [Bacillus anthracis str. Kruger B]
 gi|167530336|gb|EDR93062.1| sporulation kinase B [Bacillus anthracis str. A0442]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|221069209|ref|ZP_03545314.1| osmosensitive K+ channel signal transduction histidine kinase
           [Comamonas testosteroni KF-1]
 gi|220714232|gb|EED69600.1| osmosensitive K+ channel signal transduction histidine kinase
           [Comamonas testosteroni KF-1]
          Length = 897

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-------------LLDEVGIEDE 48
           A+     +    +   L S + HD+ +P+  I  + +             +L ++  + +
Sbjct: 658 AQQTQIAMEGERMRNTLLSAVSHDLRTPLTGILGAAQAALPHAPQGPAHHMLLQIRNQAQ 717

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +Q +  + ++     +           VD L+G    +        V +    +     
Sbjct: 718 ALQQLVDNLLAMARLQQGGVQLKREWMPVDELVGSALAQMRERLAAHVLQTSLPADLPLL 777

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +    ++L+NL   A    P G  + ++ +   ++ + S++  G          Q+ 
Sbjct: 778 QLDAVLMERVLVNLLDNAIKYTPEGTSIIVAARVLGSDCVLSVQDAGPGLPVHLPVEQLF 837

Query: 169 DGNVESTID----SHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALLE 214
           +       +       +       +   +  RL   +       V S  L 
Sbjct: 838 EPFTRGQAESAVFGMGLGLALAQRIVQAHGGRLQVAQAEPGPGTVFSISLP 888


>gi|332706440|ref|ZP_08426501.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332354324|gb|EGJ33803.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 1299

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 66/247 (26%), Gaps = 34/247 (13%)

Query: 1    MAKN---ICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEV------GIED 47
            M +N   +    + ++    L     + + H++ +P+ AI    E L E         + 
Sbjct: 755  MQQNHQRLAMANAQLERATRLKDEFLASMSHELRTPLNAILGLSEALQEEVYGSITDRQR 814

Query: 48   EVMQLIRLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIA 95
            + +  I+ S    +  +  +                  +        L  +         
Sbjct: 815  KSLSTIQGSGQHLLELINDLLDLAKIESGKMELHICAVSLQKLCNSSLMFVRNQAHHKNI 874

Query: 96   VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKI 153
                       E     R   ++L+NL   A    P GG V +  ++   +N   FS+  
Sbjct: 875  KLTSQVTEKLWEIEVDERRIRQVLINLLSNAVKFTPTGGSVILKAEEDLLRNTICFSVMD 934

Query: 154  NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G      E   ++    V              +    V      +  R+  E       
Sbjct: 935  TGIGI-AKENMPKLFQSFVQIDSRLSRRYAGTGLGLALVQRTIEIHGGRVDVESEVGQGS 993

Query: 208  VLSALLE 214
                 L 
Sbjct: 994  CFRVTLP 1000


>gi|323491808|ref|ZP_08096983.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
 gi|323313943|gb|EGA67032.1| Signal transduction histidine kinase [Vibrio brasiliensis LMG
           20546]
          Length = 850

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 56/226 (24%), Gaps = 26/226 (11%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + A   +++ H++ +P+  I    +LL +  ++   ++ + +   S    L  +     +
Sbjct: 473 MRADFLAKMSHELRTPLNGILGVSQLLKDKMVDQRDIEHVEVLCNSGEHLLAVLNDILDF 532

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWTGEKIDLSRERAK 117
           +        +      + +     +R+                 +              +
Sbjct: 533 SKIEQGQFHIESEPFRLVELTNTVERIFKPLLDDKNVAFEVVNKIPHDKWANSDQVRLNQ 592

Query: 118 ILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--- 171
           I+ NL   A      G          Q+S       +   G           I +     
Sbjct: 593 IIFNLVSNAVKFTHHGSVTVTLGCQHQESGCLLNLDVVDTGIGIEQHRLS-HIFEPFVQA 651

Query: 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V  L       +  E   D     S  + 
Sbjct: 652 EANTTREYGGSGLGLAIVQSLVTIMGGEIKLESEVDVGTRFSVRIP 697


>gi|319651394|ref|ZP_08005523.1| sensor protein [Bacillus sp. 2_A_57_CT2]
 gi|317396925|gb|EFV77634.1| sensor protein [Bacillus sp. 2_A_57_CT2]
          Length = 594

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 63/237 (26%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 359 MTEERKL----DKLRNDFIANVSHELRTPISMMQGYSEAIVDDIAGTDEEKKEMASVIYD 414

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWT--- 105
                       L   R+  G+         +    Q I         +K + +      
Sbjct: 415 ESLRMGRLVNELLDLARMEAGHIQLTMEETEVNSYLQRIIRKFQGLAKEKEISLEHDLQS 474

Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        +++ NL   A    P+ G+V +  +  +      ++ +G+     + 
Sbjct: 475 KGVPIQIDPDRIEQVMTNLIDNAIRHTPQNGEVKVLERSDERGLFIEVRDSGSGIPEEDL 534

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +    +           +       +   +K  +  +    H    S  + +
Sbjct: 535 PFVFERFYKADKARTRGRSGTGLGLAIAKNIIEAHKGHITVQSKTGHGTTFSIFIPR 591


>gi|289628857|ref|ZP_06461811.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330867397|gb|EGH02106.1| sensory box histidine kinase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 984

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 923

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975


>gi|257484047|ref|ZP_05638088.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|298485545|ref|ZP_07003627.1| Two-component sensor CbrA: intrcellular carbon:nitrogen balance
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298159945|gb|EFI00984.1| Two-component sensor CbrA: intrcellular carbon:nitrogen balance
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|331013063|gb|EGH93119.1| sensory box histidine kinase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 988

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973


>gi|225405399|ref|ZP_03760588.1| hypothetical protein CLOSTASPAR_04619 [Clostridium asparagiforme
           DSM 15981]
 gi|225043101|gb|EEG53347.1| hypothetical protein CLOSTASPAR_04619 [Clostridium asparagiforme
           DSM 15981]
          Length = 533

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 62/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELLD-------EVGI 45
           M K     +   +        L A L   I HD+ +P+ +I  +  +L        E   
Sbjct: 283 MEKERLSRIREEEAANARTQQLRADLLRSISHDLRTPLTSISGNAGILMNDTGHLAEERK 342

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVD 97
           +     +   S     +    + +     G++   +            +  +        
Sbjct: 343 KQVCQDIYDDSMWLINLVENLLSITRMEGGTMQLNMEGELLEEVIGEAMRHISRKASEHT 402

Query: 98  KRVQVSWTGEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
             V          +      ++++NL   A    P G  + +      +  +  +  +G 
Sbjct: 403 LSVTQEGDFLLARMDSRLIIQVIINLVDNAIKYTPPGSHIQVRAFRRGDLAVVEIADDGP 462

Query: 157 LARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                    ++ D           +     +       +   +  ++       H  V  
Sbjct: 463 GIPDS-AKERVFDMFYTASNKPVDSKRGMGLGLALCRSIVTAHGGQITVSDRIPHGCVFQ 521

Query: 211 ALLE 214
             L 
Sbjct: 522 FTLP 525


>gi|149177151|ref|ZP_01855758.1| probable sensory transduction histidine kinase [Planctomyces maris
           DSM 8797]
 gi|148844043|gb|EDL58399.1| probable sensory transduction histidine kinase [Planctomyces maris
           DSM 8797]
          Length = 264

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 68/230 (29%), Gaps = 19/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
            +   F     ++   L   + H+I +P+  +  +LELL E         +  +++ +  
Sbjct: 35  EEREKFEAQYSEIAT-LAGGLAHEIKNPLSTMSMNLELLTEDLETLDVPAKHRMLKKVES 93

Query: 56  SSMSAIIRLKFMRLAFGY----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                      +     +          +   D +    D  +      +++        
Sbjct: 94  VQKECKHLQDILDAFLQFARVGKLALSASNLNDLVSDFIDFFRPQAREASIEISPHFDAD 153

Query: 106 GEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             ++ + +    ++L+NL +    ++P GG + +            +  NG         
Sbjct: 154 LPQVQVDQALFRQVLMNLALNVIQAMPDGGLIELQTSHKDGMVYLDIIDNGKGIDEK-VK 212

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++I +    +      +    V  +   +  ++  E         +    
Sbjct: 213 SRIFETFFSTKPGGSGLGLPTVKKIIDAHHGKIECESEQGRGTRFTISFP 262


>gi|30261439|ref|NP_843816.1| sporulation kinase B [Bacillus anthracis str. Ames]
 gi|47526628|ref|YP_017977.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184273|ref|YP_027525.1| sporulation kinase B [Bacillus anthracis str. Sterne]
 gi|65318708|ref|ZP_00391667.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|167639215|ref|ZP_02397487.1| sporulation kinase B [Bacillus anthracis str. A0193]
 gi|170706192|ref|ZP_02896653.1| sporulation kinase B [Bacillus anthracis str. A0389]
 gi|177651607|ref|ZP_02934396.1| sporulation kinase B [Bacillus anthracis str. A0174]
 gi|190568061|ref|ZP_03020971.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I]
 gi|229600392|ref|YP_002865852.1| sporulation kinase B [Bacillus anthracis str. A0248]
 gi|254733914|ref|ZP_05191628.1| sporulation kinase B [Bacillus anthracis str. Western North America
           USA6153]
 gi|254758883|ref|ZP_05210910.1| sporulation kinase B [Bacillus anthracis str. Australia 94]
 gi|30255293|gb|AAP25302.1| sporulation kinase B [Bacillus anthracis str. Ames]
 gi|47501776|gb|AAT30452.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178200|gb|AAT53576.1| sporulation kinase B [Bacillus anthracis str. Sterne]
 gi|167512654|gb|EDR88028.1| sporulation kinase B [Bacillus anthracis str. A0193]
 gi|170128726|gb|EDS97592.1| sporulation kinase B [Bacillus anthracis str. A0389]
 gi|172082885|gb|EDT67948.1| sporulation kinase B [Bacillus anthracis str. A0174]
 gi|190560795|gb|EDV14770.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I]
 gi|229264800|gb|ACQ46437.1| sporulation kinase B [Bacillus anthracis str. A0248]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|310641218|ref|YP_003945976.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309246168|gb|ADO55735.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 600

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 59/230 (25%), Gaps = 28/230 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            ++ +   + + H++ +PI A+    E L      +       +Q+I   S      +  
Sbjct: 366 ENMRSEFVANVSHELKTPIAAVKGFAETLLGGGVKDEETARSFLQIIYDESERLNRLIGD 425

Query: 67  MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                       +  L +    +     +   + +           + 
Sbjct: 426 ILELSKIESKRSPLDCSPIHISSFIESLLEKLNNVAAKKRITLHMDIPDELFMEADEDKL 485

Query: 116 AKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +I LNL              +   +T+   +   + +F++   G      +   +I + 
Sbjct: 486 QQIFLNLLSNGINYTLDGGKVKIKVITLQRDNDTEKVVFTVSDTGIGIPKKDLP-RIFER 544

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +    V  L   +   L  E         +  L 
Sbjct: 545 FYRVDKGRSRNSGGTGLGLSIVKHLVDLHHGTLSVESELGLGTTFTVELP 594


>gi|262171081|ref|ZP_06038759.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio mimicus MB-451]
 gi|261892157|gb|EEY38143.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio mimicus MB-451]
          Length = 597

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLTR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVS 103
           I   +       + ++     + S +          +          +  +   +  +V 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTAQFKAQMTKLELCEVD 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFP 161
            T        +  ++L+NL   A  +L    +    I +Q S+ +    +  NG      
Sbjct: 478 TTVWVRVNPIQLEQVLINLLTNALQALDGQAERLVQIRLQISEQQVQIFVDDNGPGVGL- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   ++ +    +  +   +       + H  +  L               L +
Sbjct: 537 ETLPKLFEPFHTTKKNGLGLGLSISQQILHSMQGELNVATAPIGGARFIITLPR 590


>gi|170686758|ref|ZP_02877978.1| sporulation kinase B [Bacillus anthracis str. A0465]
 gi|170669281|gb|EDT20024.1| sporulation kinase B [Bacillus anthracis str. A0465]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDICTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|331019093|gb|EGH99149.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 982

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V      +     +
Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G          ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEASEHTVDLIVEDEGGGI-SKAIMDRLFE 921

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973


>gi|320012872|gb|ADW07722.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces flavogriseus ATCC 33331]
          Length = 594

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 58/217 (26%), Gaps = 20/217 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL----- 69
           ++ S I H++ +P+  I   L+   +     +  ++  ++  +      +  +++     
Sbjct: 378 VMVSDIAHELRTPLSNIRGWLDAAQDGLADPDSSLVASLQEEAGLLQHIIDDLQVLAAAD 437

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                  F      +      D  Q       V      +             ++L NL 
Sbjct: 438 AGSLRLNFRKLNLRELAEQSLDAHQTAAQAGRVALTGYFTDDLTIEGDPVRLRQVLGNLL 497

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P  G V +S    +      +   G+  +  +   +I D              
Sbjct: 498 SNAIRHTPPNGSVIVSGYRGEGGVELHVADTGSGIQPEDLP-RIFDRFWRAEQSRSRNTG 556

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  L   +   +          V +  L 
Sbjct: 557 GSGLGLSIVRHLVQAHGGEVHVVSSPGTETVFTVRLP 593


>gi|269102732|ref|ZP_06155429.1| putative sensor histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162630|gb|EEZ41126.1| putative sensor histidine kinase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 681

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 64/234 (27%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     ++S  L AL  L + I H+I +PI  I  ++EL+            + ++ I
Sbjct: 431 LNQARHKLVNSEKLAALGELTAGIAHEINNPIAVILGNVELIQFELGDGTAPIKDELEAI 490

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +     + +     +  
Sbjct: 491 HEQIDRIRNITRSLLQYSRQGGVQDEIIWQHINPIVEESLTLVRSGTKKLDIKIETDLQA 550

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +  ++L+NL M    ++      +      +   +    I  +  +G    
Sbjct: 551 KCSVEVNRHQLLQVLVNLQMNGVHAMNDSGILQISTQDWTEGKTTIGAIIKITDHGCGIS 610

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +I +    +      +       +       +  +   +     S  L
Sbjct: 611 EQNLT-RIFNPFFTTRRSGTGLGLSVSQGIIESIGGEIRVQSEVEVGTTFSIFL 663


>gi|255021474|ref|ZP_05293520.1| Nitrogen regulation protein NR(II) [Acidithiobacillus caldus ATCC
           51756]
 gi|254969107|gb|EET26623.1| Nitrogen regulation protein NR(II) [Acidithiobacillus caldus ATCC
           51756]
          Length = 362

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 65/233 (27%), Gaps = 21/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           + +        + L A  +   + H+I +P+G +  + +LLD      ++ +  R+    
Sbjct: 127 LRQTEEALQERVYLSAQEMLRGLAHEIKNPLGGLRGAAQLLDAELPRADLREYTRIILHE 186

Query: 60  AIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                  +    G        SV+    L    ++++  +     ++  +     ++  +
Sbjct: 187 VDRLRGLVDRLRGPAGAPVLQSVNIHAVLEHCRRLLQTDLPEGMVLRFDYDPSLPEIQAD 246

Query: 115 RAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +++     +   +                  +V    +         +  +G      
Sbjct: 247 PGQLVQVFLNLLRNAEQAVQGRGQVLLRTRIERQVPWMQRIHSLAVRVDVVDDGPGIPAD 306

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I    + +  +   +    V  +   +   +          V S    
Sbjct: 307 FLP-RIFLPLITTRPEGMGMGLAIVQGIVRAHGGAVHCRSRPGE-TVFSVWFP 357


>gi|228475575|ref|ZP_04060293.1| sensor protein YycG [Staphylococcus hominis SK119]
 gi|228270357|gb|EEK11792.1| sensor protein YycG [Staphylococcus hominis SK119]
          Length = 608

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 18/219 (8%), Positives = 65/219 (29%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+     +  +    + + R  ++  I  +  +     
Sbjct: 378 FVANVSHELRTPLTSMNSYIEALEEGAWKDENLAPSFLSVTREETVRMIRLVNDLLQLSK 437

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNL 122
                + +        +  + I     +            + T        +  ++  N+
Sbjct: 438 MDNETEQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPNETIFTEIDPDKMTQVFDNV 497

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 498 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 557

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 558 MGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLP 596


>gi|223936067|ref|ZP_03627981.1| histidine kinase [bacterium Ellin514]
 gi|223895289|gb|EEF61736.1| histidine kinase [bacterium Ellin514]
          Length = 552

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
            +     L   ++ +   S + H++ +PI ++    E L+     E   + E    I   
Sbjct: 307 RQAFRRQLHLSEMKSNFVSSVSHELRAPIASVRLMAEGLERGKISEPKKQHEYFHFIVQE 366

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++ +                  D +       +++    A ++R+++    + 
Sbjct: 367 CRRLSSLIENVLDFSRIEQGRKQYEFDPTDLVKLAEQTVKLM-QAYAEEQRIRIELEVKG 425

Query: 109 IDLSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              S +       + L+NL   A    P+G  V + ++ ++NE    ++  G      E 
Sbjct: 426 KARSVDLDGKAMQQALVNLIDNAVKHSPKGSVVKVGLEFAENEVALWVEDQGEGIPAAEH 485

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                                 I    V  +   +  ++L           +  L +
Sbjct: 486 QKIFERFYRLGSELRRETQGVGIGLSIVKHIVEGHGGKVLVRSEVGQGSRFTIELPR 542


>gi|197118982|ref|YP_002139409.1| osmosensitive potassium channel sensor histidine kinase KdpD
           [Geobacter bemidjiensis Bem]
 gi|197088342|gb|ACH39613.1| osmosensitive potassium channel sensor histidine kinase KdpD
           [Geobacter bemidjiensis Bem]
          Length = 892

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57
           A+      +  +L  ALL S I HD+ +P+ +I  +L  L +      E+    L+  + 
Sbjct: 654 AEQAQILRARENLERALLNS-ISHDLRTPLVSISGALGALRDRTTYLEEESRRDLLEAAW 712

Query: 58  MSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
             A    +F+                     D    +G     +E  ++  K        
Sbjct: 713 EEAGRLNRFVGNLLDMTRLEAGAMKPKRVPSDLQDLIGCALASLEPQLSKRKLTVRVDPG 772

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       ++L+NL   A    P    + +  +    +    +   G      +  
Sbjct: 773 LPLVSMDMVLMTQVLVNLLDNALKYAPSNELIELESRALDGKVTLKVADRGPGVPPQDLE 832

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +     V        +       +   +   +  E  +   + ++  L 
Sbjct: 833 RIFDKFYRVPVPEGAGGTGLGLSICKGIVEAHGGTIHAENREGGGLKITVQLP 885


>gi|56415999|ref|YP_153074.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197364926|ref|YP_002144563.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56130256|gb|AAV79762.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197096403|emb|CAR62008.1| two-component system sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESHELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|89109037|ref|AP_002817.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K-12 substr. W3110]
 gi|1736873|dbj|BAA16014.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli str. K12 substr. W3110]
          Length = 807

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 673


>gi|262195782|ref|YP_003266991.1| PAS/PAC sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262079129|gb|ACY15098.1| PAS/PAC sensor signal transduction histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 559

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 67/237 (28%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL--------------ELLDEVGIEDE 48
               + +  L  L  L + + H++ +P+ +I                  E L+    + E
Sbjct: 318 QSQVIQAEKLATLGQLAAGVVHELNNPLTSIVVYASYLEGKLSRGAHRGEALEVDPGDVE 377

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVS- 103
            ++ I  S+       + +             V     +     + E      +      
Sbjct: 378 KLRRIGASAQRISNLARELVQYAKPAHETVERVSINHVVLQALSLCEHLFENGRVHLARE 437

Query: 104 ---WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLAR 159
                     +  +  +I++NL   A  ++   G VT+          + ++   G+   
Sbjct: 438 LAGGLPPVRAIPGQLEQIVINLVTNAVHAVDGEGTVTVRTAAGADEAVVLAVADTGSGV- 496

Query: 160 FPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +I +    +  +     +    V  +   ++  +          + S  L 
Sbjct: 497 AEDLRARIFEPFFTTKTEGRGTGLGLSIVHGIVERHEGSIEVGDEAGGGALFSVTLP 553


>gi|168700859|ref|ZP_02733136.1| GAF sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 435

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 67/227 (29%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 S  + AL  + + + HD  + +  I    E++           L      + + 
Sbjct: 198 RELLQRSRKMDALGRMVAGVAHDFNNLLTVIIGFGEVIQASAAGTPTQDLAAHVVEAGLR 257

Query: 63  -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   L+F R        +D    + D + ++   +    RV +  T +   +S + 
Sbjct: 258 GQALTGQLLRFARAQPFTPEPLDLNRVVADAQPLVARLVGRGVRVTLEPTADLPPVSADP 317

Query: 116 AKILLNLFM---VAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +I   L      A  ++P GG+     V  S+ D        +   G      +  T++
Sbjct: 318 VQIGQVLLNLASNARDAMPDGGRLTLATVPGSLPDGAPAVCLRVSDTGCGM-TDDVRTRL 376

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +    V  +   +   +  E            L 
Sbjct: 377 FEPFFTTKETGTGLGMSIVADVVARHGGAISMETAPGSGTTFRICLP 423


>gi|197265671|ref|ZP_03165745.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|207857690|ref|YP_002244341.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|238913908|ref|ZP_04657745.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|197243926|gb|EDY26546.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|206709493|emb|CAR33837.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 948

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|30250022|ref|NP_842092.1| putative two-component sensor [Nitrosomonas europaea ATCC 19718]
 gi|30139129|emb|CAD85993.1| putative two-component sensor [Nitrosomonas europaea ATCC 19718]
          Length = 411

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 64/232 (27%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSS---MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR- 54
           M +       +     L A+  + + + H + +P+         L    ++ +  +    
Sbjct: 161 MTEAYALREQNRRNQRLAAMGEMAAGLAHQLRTPLSTALLYAGHLSGEALDPQERKRFAV 220

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTG 106
            +          +R    +                       +       + R  V    
Sbjct: 221 KAIERLHHLEHLIRNMLQFVKGEPVPAGRVKLSVLLRKMQRVMAPQMQQRNLRFVVQDNS 280

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             + L+ +RA +   +      A    P G  VT++ + +++E    +   G        
Sbjct: 281 RGVSLNVDRAALSNAVANLLDNAVQVSPVGSLVTLTCETTEDEARLIVSDEGPGIDPT-L 339

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++ +    +  +   +    V  L    +  +  + +       +  L +
Sbjct: 340 RERVFEPFFTTRTEGTGLGLAIVHNLIQSMRGEIRIDSVPGTGTRFTISLPR 391


>gi|319956174|ref|YP_004167437.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319418578|gb|ADV45688.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 800

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           A+         +   +L  + + H+I +P+  I    ELL    + DE  +   +   S+
Sbjct: 128 AREDRRTAQEENQAKSLFLANMSHEIRTPMNGIIGFTELLKSTPLNDEQQEFANIIEKSS 187

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSW 104
              L  +      +    + + +  I       +                     +  S 
Sbjct: 188 HNLLNIINNILDLSKIESNKVEVEHITFETHHELDNTIDNFGVVAAENDIELYYFIDPSI 247

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLA 158
           +        +  +IL NL   A      GG++++ ++  +          F +   G   
Sbjct: 248 SSRLKGDPTKIKEILTNLLNNAVKFTEAGGEISVEIEKLEATQGDRSLIEFRVIDTGIGM 307

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E+  +I +        +        +              +LL E  +      S  
Sbjct: 308 -SQEQIKKIFEPFTQADSSITRKYGGTGLGLTITKEYVELMGGKLLVESEEGKGSTFSFT 366

Query: 213 LE 214
           L 
Sbjct: 367 LP 368


>gi|269839128|ref|YP_003323820.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790858|gb|ACZ42998.1| histidine kinase [Thermobaculum terrenum ATCC BAA-798]
          Length = 539

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 56/237 (23%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           +     + ++        +L+ + + HD+ +P+  I  + + L    +E    +      
Sbjct: 294 RRRAMEMEAIKRADELKTSLINA-VSHDLRTPLATISAAADSLLRQDVEWSEEERRGFVR 352

Query: 58  MS----------------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                                              + +L+                    
Sbjct: 353 DIAEESRRLGRLVDNLLDMSRLEGGSLRPHKSWCDLGALVEETIDRLGSLTAHHQLHLEV 412

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +    E  +++ NL   A    P+G  + I V+   +E   ++   G      
Sbjct: 413 EEDLPPVLLDYVEIGQVVSNLLENAIKYAPQGTTIDIQVRRQGDEVRVAIADRGPGIPPQ 472

Query: 162 EKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                      +       L   +  R+  E       V S  L 
Sbjct: 473 DLSRIFDKFYRVQGSSPAPQGMGLGLSVAKGLIEAHGGRIWGENRPGGGAVFSFTLP 529


>gi|78063726|ref|YP_373634.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77971611|gb|ABB12990.1| multi-sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 1003

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 55/239 (23%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    +   + + H+I +P+ AI  +LEL+    +     + ++    S+
Sbjct: 507 LREARVAADDANKAKSTFLATMSHEIRTPLNAIIGNLELMGRAELPPTEQRRLKTIVSSS 566

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
                                       D    L D+  +            +  V    
Sbjct: 567 DALLNIINDVLDLSKAESNQMALEHIPFDLRRVLQDVASIFRPLADAKGLSLECHVAAEL 626

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +++ NL   A      GG    +     +        +++  G     
Sbjct: 627 ADGYVGDPTRLRQLVSNLVGNAIKFTEHGGITIDARLARGDARAGCVEIAVRDTGVGIPG 686

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               T                    +       +A      L  E          A L 
Sbjct: 687 EALPTLFDVYMQADASIYRRFGGTGLGLPLCRRIARLMDGELTVESRLGEGSTFVATLP 745


>gi|306836867|ref|ZP_07469823.1| sensor histidine kinase [Corynebacterium accolens ATCC 49726]
 gi|304567239|gb|EFM42848.1| sensor histidine kinase [Corynebacterium accolens ATCC 49726]
          Length = 511

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 63/230 (27%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           + +++       + +        H++ +P+ ++    EL       D  +    I   S 
Sbjct: 275 LQRSVVTAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATNDVDLVFSKIDKESK 334

Query: 59  SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              + ++ +         RL       ++  + +G   +       V             
Sbjct: 335 RMSLLVEDLLALTRAEGTRLDLRPVDLLELSLSVGSSARAAFPEREVKVVNNAQSIPVVN 394

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
             +    ++LLNL             VT+ ++    + +  +  +G      +    F +
Sbjct: 395 GDADRLHQVLLNLISNGLRHGGEDATVTLQLRRDNKDILVDVIDDGKGMSSEDAAHIFER 454

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +           +    V  L  ++   +  +         +  L 
Sbjct: 455 FYRADSSRTRDTGGSGLGLAIVHSLVEQHGGSISVDSKMGQGTTFTVRLP 504


>gi|196035406|ref|ZP_03102811.1| sporulation kinase B [Bacillus cereus W]
 gi|218902546|ref|YP_002450380.1| sporulation kinase B [Bacillus cereus AH820]
 gi|228926469|ref|ZP_04089541.1| hypothetical protein bthur0010_11880 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|229120978|ref|ZP_04250220.1| hypothetical protein bcere0016_12870 [Bacillus cereus 95/8201]
 gi|195992083|gb|EDX56046.1| sporulation kinase B [Bacillus cereus W]
 gi|218538285|gb|ACK90683.1| sporulation kinase B [Bacillus cereus AH820]
 gi|228662638|gb|EEL18236.1| hypothetical protein bcere0016_12870 [Bacillus cereus 95/8201]
 gi|228833293|gb|EEM78858.1| hypothetical protein bthur0010_11880 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|108761502|ref|YP_631002.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108465382|gb|ABF90567.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 1077

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 62/216 (28%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---------------RL 64
           + + H++ +P+ A+   +++L    +  E  +    +                       
Sbjct: 702 ATVSHELRTPLTAVLGWVQMLRTGTLPPEKRERALATVERNARAQGQLVEDLLDVSRIMT 761

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
             ++L          +  + +  +   +   +  +  +   G  +       +++ NL  
Sbjct: 762 GKLKLDVSSVDVSQVVEAVLESLRPAAEAKGIRIQAALDSGGTIMGDVSRLQQVVWNLLS 821

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDSH 179
            A    P+GG+V + V+   +    ++   G               +  DG+        
Sbjct: 822 NAVKFTPKGGRVQVLVERRNSSVEITVADTGQGISPQFLPHVFERFRQADGSTTRKAGGL 881

Query: 180 DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
            +    V  L   +   ++     +         L 
Sbjct: 882 GLGLAIVRHLVELHGGTVMATSEGEGRGATFIVSLP 917


>gi|73670466|ref|YP_306481.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72397628|gb|AAZ71901.1| two component system histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 729

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 61/237 (25%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + +      ++    +   + + H++ +P+ +I    +LL E     + +  ++ +   S
Sbjct: 474 LLQEKQIAEAANRTKSEFLANMSHELRTPLNSIIGFADLLYEQVYGELNERQLKSVGNIS 533

Query: 58  MSAIIRLK---------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            S    L                       +  +    I    +  + +      +    
Sbjct: 534 KSGKHLLNLINGILDLSKIEAGKMELSYKQFELASKLNIIKNLLSPIADRKNVQIEISID 593

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           S             +I+ NL   A       G V I  +   +    ++   G   +  +
Sbjct: 594 SSLSSIYADEARFVQIMYNLVDNAIKFSYENGLVKIEARKKGDLVEITVTDTGIGIKPED 653

Query: 163 KFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +             +        +    V  +   +   +            + ++ 
Sbjct: 654 QSKLFKPFSQVDSFLSKQFQGTGLGLSLVKQIVQLHGGDIWFRSKPGEGSTFAFVIP 710


>gi|84501121|ref|ZP_00999356.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           batsensis HTCC2597]
 gi|84391188|gb|EAQ03606.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           batsensis HTCC2597]
          Length = 346

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 59/234 (25%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + + H++ +P+ A+   +E L      +   +   + ++   +      +
Sbjct: 111 QAGQMRRDFVANVSHELRTPLTALLGFIETLRGPASKDPAAQQRFLGIMDREAHRMERLV 170

Query: 65  KFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWTGEKIDLS 112
           + +                                 +  +      R+            
Sbjct: 171 RDLLSLSRVEAEERVRPVTRVDIVAILESVQKSLEPLAAEAGVAFSRIDDGTPIHVPGDE 230

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLA---RFPE 162
            +  ++  NL   A     RG +V ++V                +++  G        P 
Sbjct: 231 DQLRQVFTNLIENAVKYGARGERVEVTVHLSEAVPSLRGPGVEVTVRDFGPGIEEIHIPR 290

Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    +    +    V  + + ++ RL  E            L 
Sbjct: 291 LTERFYRVDSHRSREMGGTGLGLAIVKHIVNRHRGRLRIESEPGQGCRFIVTLP 344


>gi|331642848|ref|ZP_08343983.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
 gi|331039646|gb|EGI11866.1| sensor kinase protein RcsC (Capsular synthesis regulatorcomponent
           C) [Escherichia coli H736]
          Length = 775

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 278 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 337

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 338 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 397

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 398 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 456

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 457 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 515


>gi|228983851|ref|ZP_04144046.1| hypothetical protein bthur0001_5680 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228775900|gb|EEM24271.1| hypothetical protein bthur0001_5680 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 424

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 57/219 (26%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++  +     E                +          
Sbjct: 197 SEFLASVAHELRTPLTYVRGYADIASKEATSPEQRLRYLSIIKDESDYITNLVQDLFSLA 256

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIE---DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
           ++           + L      I    + +  ++ ++VS++           +   ++++
Sbjct: 257 QMEQHNFSIQVKEVHLHTFLTRICEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVVV 316

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 317 NILNNAYRHSKEYSLIHISVTEEHKSISITIEDEGEGIPLEDLPHIFDRFYRVDKARSRA 376

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 377 TGGTGLGLSIVKEIVELHGGNITVTSEVDYGSCFIISLP 415


>gi|229127392|ref|ZP_04256387.1| hypothetical protein bcere0015_18440 [Bacillus cereus BDRD-Cer4]
 gi|228656074|gb|EEL11917.1| hypothetical protein bcere0015_18440 [Bacillus cereus BDRD-Cer4]
          Length = 351

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   +   +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 346


>gi|223936387|ref|ZP_03628299.1| integral membrane sensor signal transduction histidine kinase
           [bacterium Ellin514]
 gi|223894905|gb|EEF61354.1| integral membrane sensor signal transduction histidine kinase
           [bacterium Ellin514]
          Length = 608

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 22/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +         DL A     + H++ +P+ +I   ++ L +      G   E +QLI  
Sbjct: 375 LRRQAALARMKNDLAA----TVSHELKTPLSSIRVLVDTLLDAEKLDEGTAREYLQLIAR 430

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDLS 112
            +      ++          +  +   +    + I D          +++    +   + 
Sbjct: 431 ENERLSRLIQHFLTFSRMERNKQAFHVMPLAVRPIIDIAVEAMPGGRLELQVPSDLPRVM 490

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +   +   L      A      G  V +  +      +FS++ +G      E   +I D
Sbjct: 491 ADADAVATALINLLDNACKYSETGRHVVLRAEARNGSVLFSVQDHGIGIAARE-TKKIFD 549

Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +    V  +   +   +  E         +  L 
Sbjct: 550 PFYQVDQRLSRKGGGCGLGLSIVQSIVRAHDGCVSVESEPGRGSTFTITLP 600


>gi|254525181|ref|ZP_05137236.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
 gi|219722772|gb|EED41297.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Stenotrophomonas sp. SKA14]
          Length = 661

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------- 50
           +        ++ ++  L     + + H++ +P+  I    ELL +       +       
Sbjct: 259 LQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVI 318

Query: 51  ----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                  +      +     +         V  L  L       ++ +A  K + V    
Sbjct: 319 ANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLNLLLGEAIGAQELVAEGKALDVHLQL 378

Query: 107 EKID-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +        +    ++L NL   A    P  G++ + +Q   N  + ++   G+     
Sbjct: 379 PEQPSLVLGDATRLQQVLWNLLSNAIKFTPAEGRIDLQLQADGNHWVITVHDTGDGIAPE 438

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +   +        H    +  L 
Sbjct: 439 FLHHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVTAASEGHGHGATFTVRLP 497


>gi|126656209|ref|ZP_01727593.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
 gi|126622489|gb|EAZ93195.1| Multi-sensor Signal Transduction Histidine Kinase [Cyanothece sp.
            CCY0110]
          Length = 1565

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 30/242 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            ++I        L     S + H++ +P+ ++  +L LL      +E    + ++Q++  +
Sbjct: 1311 QDITERRELDRLKTEFISVVSHELRTPLTSMRGALGLLDSGVLREEPETVEHMLQIVLRN 1370

Query: 57   SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTG 106
                I      + L    +G V  +    +++ ++ D +     + +           + 
Sbjct: 1371 CDRLIRLVNDILNLERLESGKVQLIKEACEVDHLLTDAVETVSAMAMEASINIELTSISA 1430

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---------ENIFSLKINGNL 157
                      +IL NL   A    P G  V ++ Q   +           +FS+K  G  
Sbjct: 1431 HVWASYDAIIQILTNLLSNAIKFAPEGTTVWLTAQLFDDPDSTDRATSFVLFSVKDQGRG 1490

Query: 158  ARFPE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                +    F +    +           +       +  ++  R+  + I          
Sbjct: 1491 IPTNKLTTIFGRFQQVDASDARQKAGTGLGLAICQSIIQQHNGRIWVDSILGEGSTFYFT 1550

Query: 213  LE 214
            L 
Sbjct: 1551 LP 1552


>gi|49477192|ref|YP_035564.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|52143998|ref|YP_082830.1| sporulation kinase B [Bacillus cereus E33L]
 gi|228914010|ref|ZP_04077632.1| hypothetical protein bthur0012_12470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229183632|ref|ZP_04310855.1| hypothetical protein bcere0004_12040 [Bacillus cereus BGSC 6E1]
 gi|49328748|gb|AAT59394.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|51977467|gb|AAU19017.1| sporulation kinase B [Bacillus cereus E33L]
 gi|228599875|gb|EEK57472.1| hypothetical protein bcere0004_12040 [Bacillus cereus BGSC 6E1]
 gi|228845615|gb|EEM90644.1| hypothetical protein bthur0012_12470 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|297159981|gb|ADI09693.1| Histidine kinase [Streptomyces bingchenggensis BCW-1]
          Length = 557

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+++  +         L   + H++ +P+  +   LE L +     E E++  +    +
Sbjct: 319 MAESLQASEERQR---RLVGDVAHELRTPLANLRGYLEALRDGVVDPEPELLASLHEEVL 375

Query: 59  SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106
                +  ++            +   +D    L     V               T     
Sbjct: 376 LQQRIVDDLQDLALAEAGALTYHREDIDLGELLETCRTVHRAQAERAGVALTVETPGGEP 435

Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
                 +    + + NL   A  +   GG V +S+       +  +   G+       P 
Sbjct: 436 LYAHADADRLRQAVGNLVSNAVRATGPGGTVRLSLARRGAGAVVQVGDTGHGIPAEHLPH 495

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +           +       +  +++  +  E         +  L 
Sbjct: 496 VFDRFWRADAARGRATGGSGLGLSIARQIVTDHQGTIGVESAVGAGTTFTIELP 549


>gi|229172078|ref|ZP_04299643.1| hypothetical protein bcere0006_11920 [Bacillus cereus MM3]
 gi|228611421|gb|EEK68678.1| hypothetical protein bcere0006_11920 [Bacillus cereus MM3]
          Length = 434

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 207 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 266

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 267 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLANVRTHYIKQSTSFFIAG 326

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 327 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGIGM-DTEQVKRLGSP 385

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 386 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 429


>gi|168229631|ref|ZP_02654689.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194468800|ref|ZP_03074784.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194455164|gb|EDX44003.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205335848|gb|EDZ22612.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 948

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|221134985|ref|ZP_03561288.1| osmolarity sensor protein [Glaciecola sp. HTCC2999]
          Length = 433

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 60/204 (29%), Gaps = 6/204 (2%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLKFMRLAFGY 73
           L+ + I HD+ +P+  I  + E++DE     +      +  ++ +         +     
Sbjct: 224 LMTAGISHDLRTPLTRIRLATEMIDEQHEWVKEGIVQDIEDMNDIIDQFINYARQDREEQ 283

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
             +V+    + ++ Q            +++   E         ++L NL   A       
Sbjct: 284 RETVNLNTIIEEVVQARHFDDHHTIAQRLNPLPEISLRRVAIKRVLDNLIENAFRYGSDH 343

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTIDSHDIQFYYVILLA 190
            ++       +   I  ++  G      +          G+         +    +  + 
Sbjct: 344 LEIYTGFSAKEKRIICHIRDFGTGIPEEQLPNLLQPFTQGDRARGSSGSGLGLAIIKRII 403

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   +      +  +++   L 
Sbjct: 404 DMHHGEVAFTNHPEGGLLVVFKLP 427


>gi|34497051|ref|NP_901266.1| two-component regulatory protein sensor kinase [Chromobacterium
           violaceum ATCC 12472]
 gi|34102908|gb|AAQ59272.1| two-component regulatory protein sensor kinase [Chromobacterium
           violaceum ATCC 12472]
          Length = 895

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 78/229 (34%), Gaps = 16/229 (6%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57
           A++    + S  L   + S + HD+ +P+  +     +L+      G + E+ Q I+  +
Sbjct: 655 AQDAIVAMESERLRNSVLSVVSHDLRTPLTTMLGLANMLNAPTLPPGRQSEIAQSIQDEA 714

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI------EDFIAVDKRVQVSWTGEKIDL 111
           +     +  +         V        +++V+       +      ++++  + +   L
Sbjct: 715 IRMTKLVTNLLDMAKLQSGVKLNKEWQLLDEVVGSAVRACEHSLRHHKLELKLSRDLPVL 774

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165
             +     ++L+NL   A    P G ++ ++ +   ++   ++  +G           F 
Sbjct: 775 EYDAVLIERVLVNLLENAGKYTPAGSRIELAARHDGDKVRITVTDDGPGLPASMEHRAFD 834

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   G  EST     +       +   +   +       H    S  L 
Sbjct: 835 KFTRGAPESTTPGVGLGLAICRAIIENHGGTIEAGNAQPHGARFSFTLP 883


>gi|38234502|ref|NP_940269.1| putative two somponent system sensor kinase protein
           [Corynebacterium diphtheriae NCTC 13129]
 gi|38200765|emb|CAE50469.1| Putative two somponent system sensor kinase protein
           [Corynebacterium diphtheriae]
          Length = 519

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 62/209 (29%), Gaps = 16/209 (7%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFM---------RLAF 71
            H++ +P+ ++    EL       D  +  + I   +    + ++ +         R   
Sbjct: 302 SHELRTPLTSVKGYAELYRSGATTDADLVIEKIEDEAKRMSLLVEDLLALTRAEGARHDS 361

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
                +D  + +    +       +D R + +        +    ++L NL   A     
Sbjct: 362 KPVDLLDLALNVSSSLRGAYPDRDIDVRSECTDVPVVEGDAARLHQVLTNLVANALKHGG 421

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDSHDIQFYYV 186
              +VTI + D+ +     +  +G      +    F +    +     +     +    V
Sbjct: 422 DSARVTIKLADAGSNFAVKVIDDGIGLSEEDASHIFERFYRADSSRARSTGGSGLGLAIV 481

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             L   +   +  E    H       L K
Sbjct: 482 KSLVESHGGEVSVESEQGHGTTFIVELPK 510


>gi|323188054|gb|EFZ73349.1| sensor kinase protein rcsC [Escherichia coli RN587/1]
          Length = 949

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|298385742|ref|ZP_06995300.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
 gi|298261883|gb|EFI04749.1| two-component system histidine kinase [Bacteroides sp. 1_1_14]
          Length = 499

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 59/233 (25%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  F        ++ +   + +        +    + 
Sbjct: 320 NSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLQSLMMDIEKEQAMKPISEIEIRASFPNE 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +    +++ N    A                  + +     ++  G+      
Sbjct: 380 DVYINTDATRLKQVVCNFINNARKFTEKGYIHFGYAVDPVNADSVNIFVEDTGSGIPQEC 439

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          ++      +       +    +  +  E            L 
Sbjct: 440 QKEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVESEMGKGSRFIVTLP 492


>gi|205360803|ref|ZP_02686544.2| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205346982|gb|EDZ33613.1| sensor protein ZraS [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 465

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               LVA+  L + + H+I +P+ +I        E     G   E+ Q++   +      
Sbjct: 240 RKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERTPAGGESYELAQVMAKEADRLNRV 299

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRER 115
           +  +             + L DI     + ++ D        +                 
Sbjct: 300 VSELLELVKPAHLTLQAVNLNDIITHSLNLVSQDAQSREIQLRFTANETLKRIQADPDRL 359

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++LLNL++ A  ++ R G +++  ++S  +  I ++  +G      +    I      +
Sbjct: 360 TQVLLNLYLNAIHAIGRQGTISVEAKESGTDRVIITVTDSGKGIAPDQL-EAIFTPYFTT 418

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D   +    V  +  ++   +  + I+    V +  L 
Sbjct: 419 KADGTGLGLAVVQNIIEQHGGAIKVKSIEGKGAVFTIWLP 458


>gi|168818004|ref|ZP_02830004.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197247563|ref|YP_002147227.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197211266|gb|ACH48663.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|205345045|gb|EDZ31809.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
          Length = 948

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|218777944|ref|YP_002429262.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759328|gb|ACL01794.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 782

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIR 54
           +        M+ V  L   + HD  + +G I    E+  +             E++   +
Sbjct: 402 QRQLLQAQKMESVGRLAGGVAHDFNNMLGVIVGHAEMALDATAMDSEIREDLTEILDAAK 461

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            S+      L F R        ++    +  + +++   I  +  +  + + +   +  +
Sbjct: 462 RSANLTRQLLGFARKQTARPIVMNINEAVNSMLKMLRRLIGENIELYWNPSPDVWPVEMD 521

Query: 115 RAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156
            +++   L         ++                       +     +  +  +  NG 
Sbjct: 522 PSQVDQILANLAVNVKDAIQGIGRMTIATYKVCITNMKSPESADFTPGDYVVLEVGDNGK 581

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E    I +    +    +   +    V  +  +NK  +  E       V    L 
Sbjct: 582 GM-DEETMHMIFEPFFTTKGVGEGTGLGLATVYGIVRQNKGFIKVESELGQGTVFRIYLP 640

Query: 215 K 215
           +
Sbjct: 641 R 641


>gi|197123947|ref|YP_002135898.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196173796|gb|ACG74769.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 523

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 78/230 (33%), Gaps = 18/230 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            + +   L  +  + A+  L   + H+I +P+G I    +L+   +    + E ++LI+ 
Sbjct: 282 EREVSRRLFHAEKMSAVGQLAGGVAHEINNPLGGILAFAQLMSREERSPEDMESLRLIQD 341

Query: 56  SSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEK 108
           ++  A   ++ +              VD    + D   ++   +   +   V        
Sbjct: 342 AANRAKRIVESLLRFSRRPREEERGPVDLRQVVDDALFLLSPQLRAGRFEVVRRFEPAVA 401

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
           I    +  ++++NL + A  ++   G VT++V  +       S+   G      +   +I
Sbjct: 402 IGNGNQLQQVVVNLLVNALQAMGDRGTVTVAVGPAAPGRLRLSVADTGPGV-PEDAALRI 460

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSALLE 214
            +    +  +     +       +  E+   +  E             L 
Sbjct: 461 FEPFFTTKPEGQGTGLGLSICYQIVEEHGGTIRLEQPGPHRGACFVLELP 510


>gi|118580505|ref|YP_901755.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503215|gb|ABK99697.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 802

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           +   FN   ++ + +L   I HD  + + AI  ++ L      E       +     +S+
Sbjct: 427 EQELFNAHRLESIGVLAGGIAHDFNNLLTAILGNISLAKMLVSEGDRMFRNLDEAEKASL 486

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSR 113
            A    + +         V   + L  I +    F         + +             
Sbjct: 487 RAKGLTQQLLTFSRGGAPVRRTLSLAAIIRESAAFTLSGSGTTCRFILPEDLWPVEADEG 546

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARFP 161
           + ++++ NL + A  ++P GG+V IS  +                   ++   G      
Sbjct: 547 QISQVINNLVLNADQAMPGGGEVEISCANVVIDAKSQLPLPAGAHVRIAVSDRGQGI-PQ 605

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E  T+I D    +  +   +    V  +   +   +            +  L 
Sbjct: 606 EAITRIFDPYFTTKRNGTGLGLATVYSIIRNHDGHIAATSRQGGGSTFTIHLP 658


>gi|116748152|ref|YP_844839.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697216|gb|ABK16404.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 611

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 53/228 (23%), Gaps = 25/228 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAII 62
             +     + + H++ +P+ AI  S E L      +          +++           
Sbjct: 368 EKVRQDFVANVSHELRTPLTAIKGSAETLLSEPSPESGTLASFLGIILRNSEHMVKMVDD 427

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------KIDLSRE 114
            L+  RL     G   + +   D         A     +                    +
Sbjct: 428 LLQLARLESRQRGFKPAPVNPADALATAWKACAPQADAKQVGLENALPPAGLEVPAEFDQ 487

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             ++  NL        P G  + +  +      +F ++  G       +           
Sbjct: 488 LVQVFRNLLENGIRYGPPGKNLEVFHKMEGKNVVFGVRDQGPGIARQHQQRIFERFFRLE 547

Query: 175 TI-----DSHDIQFYYVILLAHENKIRLLPEI-IDD--HNVVLSALLE 214
                   S  +       +   +  R+  +    D          L 
Sbjct: 548 KHRSTLPGSTGLGLAICRHIVRNHGGRIWVQSPNPDGTEGTTFFFSLP 595


>gi|325522091|gb|EGD00759.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia sp. TJI49]
          Length = 713

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 66/244 (27%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +   + + D       + L + + H+I +P+  I  +LELLD   ++      +R 
Sbjct: 468 LVRQLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLDRHALDLSQRSRVRT 526

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              +A   L+ +     ++      + +  IE  +   IA +                  
Sbjct: 527 LRTAAAGLLELVSGILDFSKIEAGAMSVESIEFDVMGVIARELGAFAPVAKAKGLSLFCE 586

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155
           +  S T          A++  NL   A     +G      +             +++  G
Sbjct: 587 IAASRTQRMRGDPTRLAQVFGNLLSNAIKFTAQGHVTARVLVVRGECGAAELAIAVEDTG 646

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +        +              +       L      R+            +
Sbjct: 647 IGIGGADLHKLFKAFSQVDATITRRYGGTGLGLALCDRLVTAMGGRISVTSAPGAGSCFT 706

Query: 211 ALLE 214
             + 
Sbjct: 707 VRVP 710


>gi|83646428|ref|YP_434863.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634471|gb|ABC30438.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 796

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 56/236 (23%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS- 59
           +A++     +     +L  + + H+I +P+  +   L+ + +  +  E     + +  S 
Sbjct: 66  LARDEAMAANKAK--SLFIANMSHEIRTPLNGVIGMLQAMMQGDLSREQKARAKTALTSG 123

Query: 60  ------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------RVQVSW 104
                     L F +L             LG +       +              +    
Sbjct: 124 KLLLTVINDLLDFSKLEADKVNLERIPFSLGRLLDSCFPVVCSQASDKGLTLTLTLAAHL 183

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             + +       +I+ NL   A     RG                 +   G      ++ 
Sbjct: 184 PDQIMGDPTRLKQIICNLLSNAVKFTKRGEVSLYCYPVEDRLVFG-VADTGVGI-PADRQ 241

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            QI +                 +       L      RL               L 
Sbjct: 242 QQIFEPFSQADDSHTRRYGGTGLGLSISSRLVEAMGGRLKVRSEPGVGADFYFALP 297


>gi|313672158|ref|YP_004050269.1| pas/pac sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938914|gb|ADR18106.1| PAS/PAC sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 825

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 68/229 (29%), Gaps = 18/229 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
           K        ++ + L+   I HD  + + AI+N + +               + V+ L  
Sbjct: 453 KKEMIRKEQIETIGLVAGGIAHDFNNILSAINNYMLVAKMSFGENEKVVEFANNVITLCG 512

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--EQVIEDFIAVDKRVQVSWTGEKIDLS 112
                A   L   +     +     L  L       V+          +  +        
Sbjct: 513 TGKFLANKLLVLSKGGEHISLVETDLYSLISETARFVLSGTNIKYDVKKADYYCYGFVDQ 572

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-------NIFSLKINGNLARFPEKFT 165
              A+I  NL + A  ++P GG++ I ++   +           +++  G      +   
Sbjct: 573 NLVAQIFHNLLINAKQAMPEGGEIKIYIELDDSFLIFEKPSIKITVEDTGPGI-PEDVID 631

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I      +      +  Y V  +  ++  R+  +         +  L 
Sbjct: 632 KIFQPFFTTKQHGSGLGLYIVKAIVEKHDGRITVQSTKGKGATFTINLP 680


>gi|217961049|ref|YP_002339617.1| sporulation kinase A [Bacillus cereus AH187]
 gi|229140259|ref|ZP_04268816.1| hypothetical protein bcere0013_33590 [Bacillus cereus BDRD-ST26]
 gi|217063190|gb|ACJ77440.1| sporulation kinase A [Bacillus cereus AH187]
 gi|228643192|gb|EEK99466.1| hypothetical protein bcere0013_33590 [Bacillus cereus BDRD-ST26]
          Length = 510

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   V+   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500


>gi|170679899|ref|YP_001744412.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia coli SMS-3-5]
 gi|170517617|gb|ACB15795.1| sensor histidine kinase/response regulator RcsC [Escherichia coli
           SMS-3-5]
          Length = 949

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLQVRADGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 689


>gi|158338165|ref|YP_001519342.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
 gi|158308406|gb|ABW30023.1| two-component hybrid histidine kinase sensor and regulator
           [Acaryochloris marina MBIC11017]
          Length = 417

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIR 54
           A+N    + +  L +   + I H++ +P+ AI    +LL     +         V ++  
Sbjct: 165 AQNQEL-IKAYRLKSEFIATISHELRTPMNAIMGFSQLLLRQYPDPLSEQQLDMVQRIFD 223

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103
            S     +  + +  +      ++       +   I   I   + + V            
Sbjct: 224 NSRNLLTMVNEVLDFSKIEANRLELHPEPFQLSVPILATIQELQALAVEKALTLKAEIPE 283

Query: 104 --WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              + +  +      ++L+NL   A      G       Q   ++   S+   G      
Sbjct: 284 TLQSIQLTNDPECLRRVLVNLISNAIKFTEAGEVTLQLHQPQPDQIKISVVDTGIGMTPE 343

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  T I D                 +       L    + ++            +  L 
Sbjct: 344 QLST-IFDPFCQADQSLTRHHSGTGLGLAITESLVKAMQGQISVSSQPGVGSTFTVELP 401


>gi|118476909|ref|YP_894060.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam]
 gi|196040694|ref|ZP_03107993.1| sporulation kinase B [Bacillus cereus NVH0597-99]
 gi|196046534|ref|ZP_03113759.1| sporulation kinase B [Bacillus cereus 03BB108]
 gi|225863302|ref|YP_002748680.1| sporulation kinase B [Bacillus cereus 03BB102]
 gi|229090392|ref|ZP_04221635.1| hypothetical protein bcere0021_12210 [Bacillus cereus Rock3-42]
 gi|118416134|gb|ABK84553.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam]
 gi|196022718|gb|EDX61400.1| sporulation kinase B [Bacillus cereus 03BB108]
 gi|196028484|gb|EDX67092.1| sporulation kinase B [Bacillus cereus NVH0597-99]
 gi|225788418|gb|ACO28635.1| sporulation kinase B [Bacillus cereus 03BB102]
 gi|228692975|gb|EEL46693.1| hypothetical protein bcere0021_12210 [Bacillus cereus Rock3-42]
          Length = 402

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALALITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|300936769|ref|ZP_07151662.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300458099|gb|EFK21592.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 933

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 436 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 495

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 496 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 555

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 556 EPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLQVRADGDYLSIRVRDTGVGIPA 614

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 615 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGIGSQFTVRIP 673


>gi|298241431|ref|ZP_06965238.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297554485|gb|EFH88349.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 563

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIR 54
           M   +     ++     L S + HD+ +P+ +I  +   L +  +          +Q I 
Sbjct: 319 MQVELLRRTDALRSA--LLSSVSHDLRTPLASIKAAASSLLQEDVSWSEEERAGFIQAIE 376

Query: 55  LSSMSAIIRLKFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
             +      +  +                   +D LI                +      
Sbjct: 377 RQADRLNRLVGNLLDMSRIEGGALHPEKEWYPIDELIHDVLGHMQTTLEGREIRTSLPED 436

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                    +  +++ NL   A      G  + ISV       + S+   G      +  
Sbjct: 437 LPPVQIDYLQLDQVVTNLLENAARYTAVGSPIEISVDVMDENMLVSIGDYGPGIPPGDL- 495

Query: 165 TQIVDGNVE--------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D            S+     +       L   +  R+  E   +   +    L 
Sbjct: 496 ERIFDKFYRVSGTRRSSSSTMGTGLGLAVCRGLIEAHGGRIWAENRLEGGAIFRFTLP 553


>gi|224369332|ref|YP_002603496.1| putative pilS, sensory histidne kinase [Desulfobacterium
           autotrophicum HRM2]
 gi|223692049|gb|ACN15332.1| putative pilS, sensory histidne kinase [Desulfobacterium
           autotrophicum HRM2]
          Length = 437

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 65/217 (29%), Gaps = 16/217 (7%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMR 68
             + A+  + + + H+I +P+ +I  S++LL E        ++L+++           + 
Sbjct: 213 ERMAAMGEMVAGMAHEIKNPLASISGSIQLLAENTEPGSPNLRLMQIVLRETQRLSAIVT 272

Query: 69  LAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
               +                    +            ++  +++              +
Sbjct: 273 DFLLFAKPKSGTVKEMRLDLAIGEVVSLFRLDPICVGRIEVNLKLDSPVWIAMDPGHLKQ 332

Query: 118 ILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           +L NL      ++ + G +TI +     +    ++   G   +  +    + D    +  
Sbjct: 333 VLWNLLKNGAEAIEKTGTLTIRMAVTRTDRIHLTISDTGCGIKETD-QETVFDPFFTTKP 391

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +    V  +    +  +  E         + +L
Sbjct: 392 SGSGLGLSIVHRIIDSYQGVIDLETSPGKGTTFTLIL 428


>gi|224476782|ref|YP_002634388.1| putative alkaline phosphatase synthesis sensor protein
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421389|emb|CAL28203.1| putative alkaline phosphatase synthesis sensor protein
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 569

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 63/221 (28%), Gaps = 20/221 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            +L     + + H++ +PI +I    E L +    DE      + +I   S      ++ 
Sbjct: 340 ENLRREFVANVSHELKTPITSIKGFAETLIDGAKNDENSLDEFLNIILKESNRIESLVED 399

Query: 67  MRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERA 116
           +          +          +           A  K +++    +   +      + A
Sbjct: 400 LLDLSHIEQQTEIRTERVDLSEVTQTTVNTLYAYAQRKAIEIDAEIQNHVMIDAEASKIA 459

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           +++ NL   A         V + V    ++ I  ++ +G      E    F +    +  
Sbjct: 460 QVVTNLVSNAINYSSDESTVYVRVYQKDDKRILEVEDHGIGIAPEEQKHVFERFYRVDKA 519

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    +       +    + R+  E   D       +
Sbjct: 520 RSRDSGGTGLGLSITKHIVEAYQGRIQIESEPDVGTTFRII 560


>gi|220919457|ref|YP_002494761.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957311|gb|ACL67695.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 627

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           + +N+      M+ V  L   + HD  + +  +    ELL  D    +  + +       
Sbjct: 244 LEQNLRQA-QKMEAVGRLAGGVAHDFSNVLAVVLGYSELLVRDLPTTDPRLRECADGIIE 302

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +A          L   R        +     + D+ +++   I     V  +   +   +
Sbjct: 303 AAHRAVGVTRQLLTLSRKKLLRPEVLSLNKVVQDLGKLLGRAIGERIEVTTTLQEQPWPV 362

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDS-------------KNENIFSLKING 155
             +  ++   L      A  ++P GG + I+  +                    +++ +G
Sbjct: 363 LADADQLAQVLLNLAVNARDAMPDGGPLHIATANVEVPQALRELSLPAGRYVTLTVRDSG 422

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 E   +I +    +      +    V  +  +    +  E         +  L 
Sbjct: 423 MGM-TEEVRARIFEPFFTTKETGTGLGLATVYGIVRQAGGAIRVESRPGAGTSFTVYLP 480


>gi|242279664|ref|YP_002991793.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242122558|gb|ACS80254.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 584

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 70/233 (30%), Gaps = 25/233 (10%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSLE-LLDEVGIEDEV-------MQL 52
              + +  L ++  L + I H+I +P+  +      ++ LL++   E          ++ 
Sbjct: 328 RQMVETGKLASIGELAAGIAHEINNPVAIMIEEAGWVQDLLEDEEGEITSYTEISRALEQ 387

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           +R            +      T S    V     + +I ++ ++        + +     
Sbjct: 388 VRTQGGRCKDITHKLLSFARQTDSRVADVQLPGLIEEIVEISMQQARYAQVELSLDLDKG 447

Query: 108 KIDLS---RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163
              +     E  ++ LNL   A  ++   G   +    ++N   + S+   G        
Sbjct: 448 MPPVRASVSELQQVFLNLINNAIQAMESKGGKLMISCHAENEHALVSIADTGPGIPAANL 507

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +        +       L H+    +  E         +  L 
Sbjct: 508 G-RIFDPFFTTKPVGKGSGLGLSICYGLVHQMGGEIEVESDLGRGARFNIWLP 559


>gi|204929282|ref|ZP_03220425.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321826|gb|EDZ07025.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|322617023|gb|EFY13929.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322617671|gb|EFY14570.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322624699|gb|EFY21528.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322630248|gb|EFY27018.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322634429|gb|EFY31162.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322639139|gb|EFY35831.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322640136|gb|EFY36802.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322645776|gb|EFY42300.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322651551|gb|EFY47926.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322656112|gb|EFY52411.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322659464|gb|EFY55711.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322665926|gb|EFY62109.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322669836|gb|EFY65977.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322673821|gb|EFY69918.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322678579|gb|EFY74635.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322683625|gb|EFY79639.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322687701|gb|EFY83671.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323196202|gb|EFZ81359.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323198370|gb|EFZ83472.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323204192|gb|EFZ89203.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323208578|gb|EFZ93517.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323218249|gb|EGA02959.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323222993|gb|EGA07342.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323227428|gb|EGA11593.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323232244|gb|EGA16347.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323235723|gb|EGA19807.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323241117|gb|EGA25153.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323244859|gb|EGA28861.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323248570|gb|EGA32501.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251590|gb|EGA35458.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323255022|gb|EGA38812.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263083|gb|EGA46629.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323268143|gb|EGA51620.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323270764|gb|EGA54202.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 948

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|197124736|ref|YP_002136687.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
 gi|196174585|gb|ACG75558.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
          Length = 638

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           + +N+      M+ V  L   + HD  + +  +    ELL  D    +  + +       
Sbjct: 255 LEQNLRQA-QKMEAVGRLAGGVAHDFSNVLAVVLGYSELLVRDLPTTDPRLRECADGIIE 313

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +A          L   R        +     + D+ +++   I     V  +   +   +
Sbjct: 314 AAHRAVGVTRQLLTLSRKKLLRPEVLSLNKVVQDLGKLLGRAIGERIEVTTTLQEQPWPV 373

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDS-------------KNENIFSLKING 155
             +  ++   L      A  ++P GG + I+  +                    +++ +G
Sbjct: 374 LADADQLAQVLLNLAVNARDAMPDGGPLHIATANVEVPQALRELSLPAGRYVTLTVRDSG 433

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 E   +I +    +      +    V  +  +    +  E         +  L 
Sbjct: 434 MGM-TEEVRARIFEPFFTTKETGTGLGLATVYGIVRQAGGAIRVESRPGAGTSFTVYLP 491


>gi|56412832|ref|YP_149907.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361765|ref|YP_002141401.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56127089|gb|AAV76595.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093241|emb|CAR58686.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 948

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|228990403|ref|ZP_04150368.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM
           12442]
 gi|228996504|ref|ZP_04156143.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17]
 gi|228763136|gb|EEM12044.1| hypothetical protein bmyco0003_10910 [Bacillus mycoides Rock3-17]
 gi|228768929|gb|EEM17527.1| hypothetical protein bpmyx0001_11650 [Bacillus pseudomycoides DSM
           12442]
          Length = 466

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 57/234 (24%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MA ++              + + H++ +P+  I    E + +       + +  QLI   
Sbjct: 228 MANSLEMEDVKRK---EFSANVSHELRTPLSYIKGYSEAILDGVAKGQQQSKFTQLIHRE 284

Query: 57  SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +      +  +                       +  + +  ++      +     +   
Sbjct: 285 AGRMQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLETYELKCMEKELYISTDLDPD 344

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164
                      ++L NL   A     + G ++I ++    +    +K  G          
Sbjct: 345 IIVTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLKKKDRQCELKIKDTGIGIDAEHLEQ 404

Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +                +    V  + H +      E        +   L 
Sbjct: 405 LGERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRVESEKGKGTTVIIKLP 458


>gi|297563708|ref|YP_003682682.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
 gi|296848156|gb|ADH70176.1| integral membrane sensor signal transduction histidine kinase
           [Nocardiopsis dassonvillei subsp. dassonvillei DSM
           43111]
          Length = 534

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 61/203 (30%), Gaps = 12/203 (5%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           H++ +PI  +   LEL+ D+     EV++L+          ++ + L             
Sbjct: 326 HELRTPITIVRGHLELMGDDPEERREVLRLVTDELDRMSRIVEDLLLLAKAQQPDFLREE 385

Query: 83  LGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
              + ++              D R++    G      +   + ++ L   A      G  
Sbjct: 386 EVSLAELTSDIDAKVRRLGDRDWRLESLAEGVARLDPQRVTQAVVQLAANAVRHTAPGST 445

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDG-NVESTIDSHDIQFYYVILLAH 191
           + +    S ++ +F +   G      E    F +   G           +    V  +A 
Sbjct: 446 LRVGSGFSGDDVLFWVSDQGPGIPAEEHGRIFERFSRGSGAARGDRGAGLGLAIVRAIAE 505

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +  R+            + ++ 
Sbjct: 506 AHHGRVDLRSAPGVGSTFTLVIP 528


>gi|326624090|gb|EGE30435.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 948

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|213646233|ref|ZP_03376286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. J185]
          Length = 961

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|254409946|ref|ZP_05023726.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182982|gb|EDX77966.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1957

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----------EVM 50
            + + +  +   ++  A + S   HD+  P+ A+ +  +LL +  ++            ++
Sbjct: 1720 LTQELQRSNQELEQFAYIAS---HDLQEPLRAVASYTQLLQQDYLDQLDESAQDYMAFII 1776

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         L + RL         +       +      IA+ +            
Sbjct: 1777 DGATRMRQLIQALLMYSRLGTRPPEGKPTDCNAILHQVTENLQIAIAESQATISHDSLPT 1836

Query: 111  LSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQ 166
            +  +  +++     +   ++         +Q      +N  +F +K NG   +      +
Sbjct: 1837 VQADPTQVIQLFQNLIANAIKFCRDRPPHIQIEAQLRENAWLFQVKDNGIGIKPKYL-DR 1895

Query: 167  IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I                 I       +   +  ++  E            L 
Sbjct: 1896 IFVIFKRLHTRREFSGTGIGLAVCKKIVERHGGQIWVESQPGVGSTFFFTLP 1947


>gi|171060406|ref|YP_001792755.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170777851|gb|ACB35990.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 675

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 80/235 (34%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52
           +A      L S  L A+  L + I H++ +PI  I  +L++L               ++L
Sbjct: 435 LAAAQSQLLRSEKLAAVGQLTASIAHEVNNPIAVIQGNLDVLRSQLPAATAATVHTELRL 494

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104
           I        + +  +               VD+   L D   ++   +A  +        
Sbjct: 495 IDEQIERMRLIVTQLLQFAKPAEYAGYIAPVDTARVLDDCLVLVGHLLARTRITVQRDFT 554

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
            T +      E  ++L+NL + A  ++P GG + ++ +D + +    S+  +G      E
Sbjct: 555 ATRQPGINRNELQQVLVNLLVNAIHAMPEGGALGLATRDVEPDSVAISVTDSGAGLDV-E 613

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLEK 215
              Q+    V    D   +  +    L       L      D       + LL +
Sbjct: 614 LMDQLFQPFVTRKKDGTGLGLWISRSLVERYGGDLRAANRSDGVIGAEFTVLLRR 668


>gi|251795530|ref|YP_003010261.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247543156|gb|ACT00175.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 591

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 62/226 (27%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL-K 65
             + +   + + H++ +PI A+    E L     ++       +Q+I   S      +  
Sbjct: 363 ERMRSEFVANVSHELKTPIAAVKGFAETLLGGAVNDEETARSFLQIIYDESDRLNRLIGD 422

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVSWTGEKIDLSRER 115
            + L+   +  V       +++  +   + + +          ++++             
Sbjct: 423 ILALSKIESKRVPLYFSPVEMDSFMTKTVTMMESEAAKKSIKLQLEMEHGLYVEADEDRL 482

Query: 116 AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            +I++N+        P G           ++     +   G      +   +I +     
Sbjct: 483 RQIMMNVIANGVNYTPEGGKVSVNIESIDEDHIRIQISDTGIGIPKKDLP-RIFERFYRV 541

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     +    V  L   +K  +               L 
Sbjct: 542 DKARSRSSGGTGLGLSIVKHLVELHKGTIAVTSAVGVGSTFVIELP 587


>gi|168466036|ref|ZP_02699906.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631257|gb|EDX49817.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 948

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|162453153|ref|YP_001615520.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161163735|emb|CAN95040.1| two-component histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 516

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 58/215 (26%), Gaps = 19/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H+  SP+ +I  + ELLDE            ++ I L        +  +     
Sbjct: 300 FAADVAHEFKSPLTSIRGAAELLDEGAADDLEARRRFLRNIELDVARLDRLVSRLLELSR 359

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR-VQVSWTGEKIDLSRERAK-----ILLNLFMVA 126
              S +++  L     V             V    E         +      LLNL   A
Sbjct: 360 IEASSEAMTVLDLEALVARVVERRASPGQPVELRYEMRTRLLRARQTDLETALLNLVDNA 419

Query: 127 HASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQIVDGNVESTID--SH 179
               P G  V ++V+  +          +++  G          +I D    +       
Sbjct: 420 VKFSPPGEVVVVTVEGGEGREGERTARIAVRDRGPGVPPQHLP-RIFDRFFTTDEGRDGT 478

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +   +   +  E            L 
Sbjct: 479 GLGLAIVKSVVEAHGGAVTVESAPGEGASFVVELP 513


>gi|16761198|ref|NP_456815.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|29141108|ref|NP_804450.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|289830050|ref|ZP_06547499.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-3139]
 gi|17433762|sp|Q56128|RCSC_SALTI RecName: Full=Sensor protein rcsC; AltName: Full=Capsular synthesis
           regulator component C
 gi|25298510|pir||AD0790 sensor protein RcsC (EC 2.7.3.-) [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503497|emb|CAD07502.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136734|gb|AAO68299.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 948

 Score =  116 bits (290), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|307153463|ref|YP_003888847.1| ATP-binding region ATPase domain-containing protein [Cyanothece sp.
            PCC 7822]
 gi|306983691|gb|ADN15572.1| ATP-binding region ATPase domain protein [Cyanothece sp. PCC 7822]
          Length = 2003

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 59/241 (24%), Gaps = 29/241 (12%)

Query: 1    MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQL 52
            + + +     + ++        +   + + H++ +P+  I    ++   +  + ++    
Sbjct: 1528 LEQEVRERQRAEEIAEAANRAKSEFLANMSHELRTPLNGILGYAQICKKDKNLNEQQKNR 1587

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------- 103
            I +        L  +      +      + L   +    DF+     +            
Sbjct: 1588 IEIIHQCGEHLLTLINDILDISKIEARKMELCPTDFYFGDFLRGILEICQIKAEQKGISL 1647

Query: 104  -------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                            +   +IL+NL   A     +G               F ++  G 
Sbjct: 1648 IFQPLSSLPKIVQVDEKRLRQILINLLNNAVKFTEKGSITFKVSYQKGK-VNFQVEDTGI 1706

Query: 157  LARFPEKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 +           G      +   +       LA      +  +       + S  
Sbjct: 1707 GIAPNQLEEIFLPFQQVGEYSRKTEGTGLGLSISRQLAQMMGGTITVKSSLGKGSIFSLD 1766

Query: 213  L 213
            L
Sbjct: 1767 L 1767


>gi|299149291|ref|ZP_07042351.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512725|gb|EFI36614.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 534

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 56/229 (24%), Gaps = 22/229 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    NL  +    L  + + H+I +P+ AI     LL E   + E    +        
Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106
             L  +         +++      ++ +       D                        
Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKEDKPVPVLLAPTLPNF 418

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                 +   +++ N    A     +G  +             FS+   G     P+K  
Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKEDTCEIEFSVADTGMGI-EPDKVD 477

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           ++ D  V   S      +       +       +  E            
Sbjct: 478 RVFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGTGSRFWFT 526


>gi|228992330|ref|ZP_04152261.1| hypothetical protein bpmyx0001_30720 [Bacillus pseudomycoides DSM
           12442]
 gi|228767355|gb|EEM15987.1| hypothetical protein bpmyx0001_30720 [Bacillus pseudomycoides DSM
           12442]
          Length = 519

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52
           + K       S  L     L + I H+I +P+ A+   L LL     E        ++  
Sbjct: 281 LKKTEKLLRKSEKLAVVGQLTAGIAHEIRNPLTALKGFLTLLQPDISEQNKWYIDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       S      + ++   ++   I     + +       ++
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHSHQIQSLIEEVVTFILPTAIMHSTHIIMDHLSTMPEI 400

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
             +  ++          A  ++PRGG + I  +   +N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINVLKNAIEAMPRGGNIFIQTKQVDENFILIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHYGKLQISSELNKGTTVDIRLP 506


>gi|229134078|ref|ZP_04262898.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196]
 gi|228649413|gb|EEL05428.1| hypothetical protein bcere0014_29930 [Bacillus cereus BDRD-ST196]
          Length = 448

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +A N      S+     +     S + H+  SP+ +I    + L             +++
Sbjct: 211 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 270

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105
           I   S       K +            L       Q        + ++   +K + V + 
Sbjct: 271 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFD 330

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              I +  +     ++  N+F  +      GG +   V++ ++  + S+  NG      E
Sbjct: 331 VPDIFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEKEE 390

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +I D            I+   +    V  +   +   +           +   L K
Sbjct: 391 -MDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 448


>gi|254457203|ref|ZP_05070631.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
 gi|207085995|gb|EDZ63279.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Campylobacterales
           bacterium GD 1]
          Length = 740

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 68/228 (29%), Gaps = 23/228 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----- 63
           +++        S + H++ +P+ AI   L +L++   + + ++ +R    S+        
Sbjct: 369 ITAQKAKEEFFSNMSHELRTPLNAILGFLNILNKQISDKKHLEYLRHVGTSSKQLLNLIN 428

Query: 64  -----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                         +                     +I+  I++   +     G  I   
Sbjct: 429 DILDLAKIKTGEFTVDAHEFNAYEELKDYAQQFEGMLIDKNISLKSHISHDLKGVFIGDL 488

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171
              ++I+LNL   A    P GG +++ +   + +    ++  G     P+   +I     
Sbjct: 489 FRISQIILNLLSNAIKFTPDGGTISLYIDYKEEKFSIVVQDTGIGM-SPDVQDKIFKPFV 547

Query: 172 -----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +       L      +L+ E  +         + 
Sbjct: 548 QADGSTTRKYGGTGLGLSITQKLIELMNGKLILESQEGKGSTFKVKIP 595


>gi|192360517|ref|YP_001982372.1| putative sensory box histidine kinase/response regulator
           [Cellvibrio japonicus Ueda107]
 gi|190686682|gb|ACE84360.1| putative sensory box histidine kinase/response regulator
           [Cellvibrio japonicus Ueda107]
          Length = 1232

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++       +  +    +  + + H+I +P+ AI    ELL +  ++   ++ ++  
Sbjct: 660 MEQDLVAAKERAEQASIAKGMFLANMSHEIRTPMNAIIGFTELLLDSALDPVQLKHMQTV 719

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------VQVSWTG 106
             SA   L  +             + L      ++                  + +    
Sbjct: 720 RQSARSLLGLLNDILDTAKLERGALELDMHVFSLKQLCQQIMAELQIQADKKGLGLHLDY 779

Query: 107 EKIDLSR------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                 +         ++L+NL   A      G  V +SV          ++  G     
Sbjct: 780 VHTTPDQVLGDELRIRQVLVNLLGNAIKFTLTGE-VRLSVDVLGEGVRMQVQDTGIGIAV 838

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E+   I          +        +       L      ++    ++         L 
Sbjct: 839 -ERIEHIFTPFTQADASMARRFGGTGLGTTIARQLTELMGGKISVTSVEGQGSCFVVWLP 897


>gi|160885841|ref|ZP_02066844.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
 gi|156108654|gb|EDO10399.1| hypothetical protein BACOVA_03845 [Bacteroides ovatus ATCC 8483]
          Length = 534

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 56/229 (24%), Gaps = 22/229 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    NL  +    L  + + H+I +P+ AI     LL E   + E    +        
Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106
             L  +         +++      ++ +       D                        
Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKEDKPVPVLLAPTLPNF 418

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                 +   +++ N    A     +G  +             FS+   G     P+K  
Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKEDTCEIEFSVADTGMGI-EPDKVD 477

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           ++ D  V   S      +       +       +  E            
Sbjct: 478 RVFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGTGSRFWFT 526


>gi|163940905|ref|YP_001645789.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163863102|gb|ABY44161.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 458

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +A N      S+     +     S + H+  SP+ +I    + L             +++
Sbjct: 221 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 280

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105
           I   S       K +            L       Q        + ++   +K + V + 
Sbjct: 281 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFD 340

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              I +  +     ++  N+F  +      GG +   V++ ++  + S+  NG      E
Sbjct: 341 VPDIFIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGMEKEE 400

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +I D            I+   +    V  +   +   +           +   L K
Sbjct: 401 -MDRIFDRFYKVDTARARNIEGSGLGLSIVQKIVELHNGNVSVYSTKGEGTTVRVELPK 458


>gi|308273634|emb|CBX30236.1| hypothetical protein N47_D30450 [uncultured Desulfobacterium sp.]
          Length = 598

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 55/227 (24%), Gaps = 25/227 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
            ++     + + H+I +P+ AI    E L      +       + +I   +   I  +  
Sbjct: 369 ENMRRDFAANVSHEIKTPLTAIKGFTETLKAGALNKPEEAFRFVGIIENHTNRLISIIDD 428

Query: 67  MRLAF-------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +                         L+    I ++  D   +               + 
Sbjct: 429 LMKLSFIEQNSAGQEIALMDCMIRPILLSAIQICRLKADEKKIKIVCICDEGLSAKINAA 488

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
              +  +NL   A         V I    S+       + +G      E   ++ +    
Sbjct: 489 LIEQAFVNLIDNAIKYSEPETSVEIEALKSETGITIVFRDHGIGI-SSEHIPRLFERFYR 547

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    +    V  + + N   +  E            + 
Sbjct: 548 VDASRSRKLGGTGLGLAIVKHIVNANGGDISVESKPGKGSSFCIQIP 594


>gi|320326090|gb|EFW82147.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 984

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 923

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975


>gi|182418132|ref|ZP_02949432.1| sensor protein KdpD [Clostridium butyricum 5521]
 gi|237666286|ref|ZP_04526273.1| sensor protein KdpD [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182377950|gb|EDT75490.1| sensor protein KdpD [Clostridium butyricum 5521]
 gi|237658376|gb|EEP55929.1| sensor protein KdpD [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 468

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +NI   +    L + L   I HD+ +P+ AI  +                 +L+ ++  
Sbjct: 234 RENIRIEMERERLRSNLIRGISHDLRTPLTAIVGASGVVIDNINKLPQETIKDLVKDINE 293

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           E   +  +  + ++     +   +       VD ++                +       
Sbjct: 294 EALWLNNLVENILNMTRIGEGKLVIKKQDEVVDDIVDESLRHISGLLSNRDVQVSLPREV 353

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  +   ++L+NL   A         + + V    +  +F +  NG          
Sbjct: 354 ISIPVDGKLIVQVLINLLDNAVKYTDEKCTIYLRVFQKDDFIVFEIADNGEGINES-IID 412

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D  V              +       + + +   +      +   + S  L 
Sbjct: 413 KIFDSFVSYSGKIVDGKRGMGLGLAICKAIINAHGGEITAGKSPEGGALFSFTLP 467


>gi|218779276|ref|YP_002430594.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760660|gb|ACL03126.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 589

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 61/225 (27%), Gaps = 24/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            ++     + + H+I +PI AI   +E L     D+       +++I   +      ++ 
Sbjct: 364 ENMRRDFVANVSHEIKTPITAIKGFVETLLDGALDDKENAKRFLEIISRHTDRLKAIVED 423

Query: 67  MRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +                      ++L     + +       +   +        +     
Sbjct: 424 LLELSRIEQAGGRELPLERASVKEALETAVQVCEARAISENITVEMDCPDDLTAVFDPTM 483

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             + ++NL   A       G V +  +    E +  ++  G      E   ++ +     
Sbjct: 484 IEQAVVNLLDNAVKYSEEHGVVRVGAKAEGGEVLIWVEDEGPGI-SEEHLPRLFERFYRV 542

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +    +    V  +   +   +  +         +  L
Sbjct: 543 DKARSRNLGGTGLGLAIVKHIMAAHGGHVSVKSEKGKGAAFTLHL 587


>gi|297583656|ref|YP_003699436.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142113|gb|ADH98870.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 597

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 66/216 (30%), Gaps = 23/216 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+ ++    E L     ++  +  + +++I   S      +  +     
Sbjct: 364 FVANVSHELKTPVTSLKGFTETLLEGAVNDDELRMKFLRIIANESDRLETLIFELLELSR 423

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                    +        +  + D+         +    ++S +           +IL+N
Sbjct: 424 IEGEAFSLNWQTVDIEPLIDEVFDMLGEKASAKQMTIEKKISGSPILAGEGARIKQILIN 483

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A      GG +T+ V++   + +  ++  G      E   +I +            
Sbjct: 484 LINNAIVYTHEGGTITVRVKEQAEQVVLEVEDTGIGLSKKEIP-RIFERFYRVDRARSRN 542

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    V  LA  ++ +L  +           
Sbjct: 543 SGGTGLGLAIVKHLAEAHRAKLSVDSEPGKGTTFRI 578


>gi|310817773|ref|YP_003950131.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390845|gb|ADO68304.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 760

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 20/234 (8%)

Query: 2   AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLS 56
            K     L  + +        + HD+ +P+ AI  S  +L              + I  S
Sbjct: 513 RKQQEERLRQTAEFRERFMGVVSHDLRNPLNAILLSANVLLRTDGVHANHAKVARRIVAS 572

Query: 57  SMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106
               +  +  +              +            + + +       + R+      
Sbjct: 573 GERMVRMIGELLDFTRGRLGGGIPVHLHPCHLRQLCRHVLEELEISHPGRELRLNAQGHF 632

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP----- 161
             +      A++L NL   A    P G  V  ++ D  +     +   G           
Sbjct: 633 PGMWDPDRLAQLLDNLGKNALDYSPAGTPVDFTLLDCGDTLRIEVHNEGPPIPPALMPVI 692

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  +              +  + V  +A  +   +     +      +  L +
Sbjct: 693 FEPFRRAVAGDAHPTSGLGLGLFIVQQIAQAHGGTVSVNSQEGQGTTFTVQLPR 746


>gi|317154359|ref|YP_004122407.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944610|gb|ADU63661.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 764

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 57/240 (23%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK                + + H+I +P+  I    +L+ E        Q I +   S 
Sbjct: 376 LAKERAEAADRAK--TDFLAGMSHEIRTPMNTILGMADLMLETDPTPVQRQYIEVFQSSG 433

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SW 104
            + L  +      +      + L  +   + DF+   + +                    
Sbjct: 434 AMLLGIINDVLDLSKIEAGEVRLETVPVDMADFLNRTREIVAGRAAQKGLAFRIEQADHA 493

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
               +       ++L+NL          G       Q +       F++   G     PE
Sbjct: 494 PRRFLGDPVRLRQVLVNLIDNGIKFTESGTVRLAVGQAADPPGRLTFAVTDTGIGI-APE 552

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LE 214
              QI                   +       L       +  E         S    L 
Sbjct: 553 SQEQIFQRFTQADASTTRKYGGTGLGLAISRRLVELMGGEIRLESAPGQGSTFSFTVDLP 612


>gi|295402149|ref|ZP_06812108.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112731|ref|YP_003991047.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
 gi|294975832|gb|EFG51451.1| multi-sensor signal transduction histidine kinase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217832|gb|ADP76436.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y4.1MC1]
          Length = 609

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  + + LE L      +  I    +++I+  +   I  +  +     
Sbjct: 380 FVANVSHELRTPLTTMKSYLEALAEGAWQDKAIAPRFIEVIQTETERMIRLVNDLLQLSK 439

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLN 121
                               + +    +   + +                  +  ++L N
Sbjct: 440 LDSKDYKLNKSWVNFSEYFHKVIDRFELTKSENITFVRKIPKEAIFIEIDEDKITQVLDN 499

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A    P+GGK+T  V++  +E I S+   G      +    F +    +      +
Sbjct: 500 IISNAIKYSPQGGKITFRVRELADEIIVSVSDEGVGIPKADLAKVFERFYRVDKARSRKL 559

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E  +     +   L 
Sbjct: 560 GGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLP 597


>gi|239828687|ref|YP_002951311.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
 gi|239808980|gb|ACS26045.1| PAS/PAC sensor signal transduction histidine kinase [Geobacillus
           sp. WCH70]
          Length = 608

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  + + LE L      +  I    +++++  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTTMKSYLEALAEGAWQDKAIAPRFIEVVQTETERMIRLVNDLLQLSK 438

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLSRERAKILLN 121
                               + +    +   + +                  +  ++L N
Sbjct: 439 LDSKDYKLNKSWVNFSEYFHKVIDRFELTKSENITFVRKIPKEAIFIEIDKDKITQVLDN 498

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A    P+GGK+T  V++  +E I S+   G      +    F +    +      +
Sbjct: 499 IISNAIKYSPQGGKITFRVRELADEIIVSVSDEGVGIPKGDLAKVFERFYRVDKARSRKL 558

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E  +     +   L 
Sbjct: 559 GGTGLGLAIAKEVVIAHGGTIWAESKEHKGTTIFFTLP 596


>gi|219849497|ref|YP_002463930.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543756|gb|ACL25494.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 875

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 56/247 (22%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRL 55
            + +   L    L     +   + I H++ +P+ AI     +L +          +    
Sbjct: 611 TEELRAALERAQLADRRKSDFLASISHELRTPLNAIIGFSTVLLDDTEQPLTPTQREDVQ 670

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW 104
           S       L  +         +++              +          +  ++ V +  
Sbjct: 671 SINRNGRFLLHLINELLDLARIEAGHLNLELGSVDLCQVTAEVCDTVQTLLRNRPVTLRN 730

Query: 105 TGEKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSL 151
               +            +IL NL   A     RG     +    +             S+
Sbjct: 731 ALPMVLPDVVADSDRLRQILFNLLSNAIKFTERGTITVSAQVLDEVNEDGKLCRYVAVSV 790

Query: 152 KINGNLARFPEKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
              G       +              S +    +       L      R+  + I     
Sbjct: 791 SDTGIGIPHERQQDIFGEFVQIHGRRSRLGGTGLGLAITRKLVEAQGGRIWVDSIPGIGS 850

Query: 208 VLSALLE 214
             +  L 
Sbjct: 851 TFTFTLP 857


>gi|17232681|ref|NP_489229.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17134328|dbj|BAB76888.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 537

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 61/203 (30%), Gaps = 12/203 (5%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           H++ +PI  I   LEL+     E +      +  +   +      +   +        ++
Sbjct: 323 HELRTPITIIRGHLELMGNDPKEIQETLTIVIDELERMNRFVNDLMLLAKAERPDFLLLE 382

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGK 135
           +       E++      +  RV       +  +  +R ++   +      A         
Sbjct: 383 TFDVCTFTEELFAKVKGLGDRVWQLEAVARGKIVGDRQRLTQAVMNLAQNATQHTNNTDT 442

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-IDSHDIQFYYVILLAH 191
           + +     +++  F ++  G      +    F +           +   +    V  +A 
Sbjct: 443 IALGSMIHRDKISFWVRDTGTGIASADQYRIFQRFARATNSRRLSEGAGLGLSIVQAIAE 502

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +K R+  +       V + +L 
Sbjct: 503 AHKGRVTLQSELGEGSVFTIILP 525


>gi|310639848|ref|YP_003944606.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244798|gb|ADO54365.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 498

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 64/233 (27%), Gaps = 27/233 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
            + +   +          +   H++ +P+ +IH  LE+L      +       ++ +   
Sbjct: 268 ERELQMQMRR------FIADASHELRTPLTSIHGFLEVLLRGAASNPKQLQSALESMYGE 321

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           S      +  + L      + +  +         L    Q++           ++     
Sbjct: 322 SKRMNKLVSDLLLLAKLDRTPELKLEDISLDALLLEMKPQLLMLAGTRKVFFDMTAGVRV 381

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQI 167
           +    +  +++LNLF  A         V      +  +     ++ NG      E+  +I
Sbjct: 382 LAEGDKIKQVVLNLFHNAVQHTDMEQGVIHVNLSAGKKLADIQIRDNGPGM-GKEQLERI 440

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +     +       +   +   +  E       +    L 
Sbjct: 441 FERFYRGDESRTRSSGGAGLGLAITKSIVEAHGGSITAESTLGTGSIFKVTLP 493


>gi|301309034|ref|ZP_07214979.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
 gi|300833060|gb|EFK63685.1| putative His Kinase A (phosphoacceptor) domain protein [Bacteroides
           sp. 20_3]
          Length = 622

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 59/229 (25%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       +  L +   + + H+I +P+ AI    +LL   ++  +    + LI++++
Sbjct: 385 LIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDSELRQNYISLIKMNN 444

Query: 58  MS----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              M         + S +        +     V+  +       
Sbjct: 445 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLDACPDII 504

Query: 108 KIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +I +NL   A     +       +++  +    F +   G      E    
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTIEAEEKMIKFYVSDTGCGIPKDELDNI 564

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S  +    +       L  +    +     +         L 
Sbjct: 565 FARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613


>gi|257057098|ref|YP_003134930.1| signal transduction histidine kinase [Saccharomonospora viridis DSM
           43017]
 gi|256586970|gb|ACU98103.1| signal transduction histidine kinase [Saccharomonospora viridis DSM
           43017]
          Length = 498

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 58/203 (28%), Gaps = 12/203 (5%)

Query: 24  HDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYT 74
           H++ +PI  +   LE+LD  +       ++L+          +  +       +  F   
Sbjct: 281 HELRTPITIVRGHLEVLDPADPEDVANTVELVDDELGRMNRMVSDLLLLARSEQPEFLRP 340

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
             VD       I   +      D  +      E +   +   + ++ L   A      G 
Sbjct: 341 EPVDLAALTEAIFDKVTGLGERDWVLDSVARVEAVLDPQRVTQAVVALADNAVHHTSDGA 400

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAH 191
           ++ +          F +  +G      +    F +   G      D   +    V  +A 
Sbjct: 401 RIALGSDHGPGVVRFWVADSGVGVAEEDRERIFERFARGGSGRRSDGAGLGLSIVRAIAV 460

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +  R+  +         +  + 
Sbjct: 461 AHGGRVTLDSEPGRGATFTVEVP 483


>gi|228945037|ref|ZP_04107398.1| hypothetical protein bthur0007_12030 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228814706|gb|EEM60966.1| hypothetical protein bthur0007_12030 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 402

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALALITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|220909974|ref|YP_002485285.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866585|gb|ACL46924.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 701

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  I    ++L       + + +   +          +         +  
Sbjct: 337 AVLSHELRTPLNPILAWSQMLQHRKFSQDKLAIGLETIERNAKLQAQLIDDLLDMARILR 396

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---------------KILLNLFM 124
              + +   +    +       V  +     +  E+                +++ NL  
Sbjct: 397 DKLVLNPVPLDLGRVIDAAIETVQPSAAAKSVVIEKHFSAVGQVSGDAARLQQVIWNLLA 456

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVESTIDSH 179
            A   +P GG+V I +    +     +K NG   +           +  D +   T    
Sbjct: 457 NAVKFVPEGGRVQIGLAQIGDRIQIQVKDNGKGIKPDFLPYVFESFRQADASTTRTFGGL 516

Query: 180 DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
            +    V  +   +   +  +   D      + LL 
Sbjct: 517 GLGLAIVRQIVEMHGGTITADSEGDGQGATFTVLLP 552


>gi|121727836|ref|ZP_01680903.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae V52]
 gi|121629872|gb|EAX62286.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae V52]
          Length = 588

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 67/236 (28%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 349 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 408

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 409 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 468

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGN--LAR 159
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 469 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPSVGI- 527

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 528 --ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 581


>gi|148269219|ref|YP_001243679.1| histidine kinase [Thermotoga petrophila RKU-1]
 gi|147734763|gb|ABQ46103.1| histidine kinase [Thermotoga petrophila RKU-1]
          Length = 493

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 54/240 (22%), Gaps = 31/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNS-------------------LELLDEVG 44
                +  M       + I H++ +P+ AI                      LE++ +  
Sbjct: 246 ERLKRIDRMK--TEFIANISHELRTPLTAIKAYAETIYNTLEELDLGTLKEFLEVIMDQS 303

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              E +    L       +   +         +         E      + V     V  
Sbjct: 304 SHLENLLNELLDFSRLERKSLQINREKIDLCGLIESAVNAIKEFASSHNVNVLFESNVPC 363

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161
             E         ++LLNL         +            +     + +++ NG      
Sbjct: 364 PVEAYVDPTRIRQVLLNLLNNGVKYSKKDVPDKYVRVILDEKDGGVLITVEDNGIGI-PD 422

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +I +            +    +       +   +  ++  E            + K
Sbjct: 423 HAKDRIFEQFYRVDSSLTYEVPGTGLGLTITKEIVELHGGKIWVESEVGKGSRFFVWIPK 482


>gi|12483718|gb|AAG53733.1|AF178425_3 KinC [Lactococcus lactis subsp. cremoris MG1363]
 gi|2182992|gb|AAC45385.1| histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
          Length = 475

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 76/229 (33%), Gaps = 31/229 (13%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRLA 70
           L  S + H++ +P+ ++   LE L++  I+D       +      +     +    + L+
Sbjct: 230 LFVSNVSHELRTPLTSVKAYLEALEDGAIDDKETASSFIRCFTNRNQSDDSVISDLLTLS 289

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------------QVSWTGEKIDLS 112
                 +     + ++   ++  I    ++                             +
Sbjct: 290 RMDQDRIVLNKEIINLIAFLDYQINRLDQILETESNDLISSNFTLVRKYSDKPIWVEIDT 349

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166
            + A+++ N+   A    P+GG +TI V+  + + + S+K  G            ++F +
Sbjct: 350 DKIAQVIDNIIGNAIKYSPKGGTITIYVETRERDVLISIKDEGMGIPKSDLLKIFDRFYR 409

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           + + +  S +    +    V  +   +   +      +      S  L 
Sbjct: 410 VDNASRNSKVGGTGLGLSIVHDIVKIHGGTIFASSEGEGKGTTFSFTLP 458


>gi|29347984|ref|NP_811487.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339886|gb|AAO77681.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 419

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 63/229 (27%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60
                +S+  L +   + + H++ +P+ AI     L+        +     +I  ++   
Sbjct: 180 ERENAISADKLKSAFIANMSHEVRTPLNAIIGFSGLMATATSEEEKKMYTDIISENNERL 239

Query: 61  IIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GE 107
           +  +  +                  D+   L ++E +    +  +  V +          
Sbjct: 240 LRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLFGMRLNENPLVTLVCEAHLEPIM 299

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +   ++L NL   A      G        +  +E  F +   G      E+  +I
Sbjct: 300 MHSEKQRIIQVLTNLLHNAMKFTKTGEIRFGCRMEGTDEVYFYVSDTGIGI-PKEEQEKI 358

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  +    +       + H    R   E           +L 
Sbjct: 359 FSRFTKLDREMQGTGLGLTLSQTIVHNLGGRFGVESEVGKGSTFLFILP 407


>gi|329955377|ref|ZP_08296285.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328525780|gb|EGF52804.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 624

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +AK        +    L  + + H+I +P+ AI     LL   ++    D  + LI  ++
Sbjct: 392 LAKEKAEESDRLKSAFL--ANMSHEIRTPLNAIIGFSGLLPYIEDAEERDRYIALINHNN 449

Query: 58  MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             + L+  +    D +       Q         K    +   
Sbjct: 450 ELLLNIINDVLDLSKIEAGHIELSPVWLNLSDLIDESCTECQRNVPEGVTLKTRYPAIPR 509

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L NL   A  +  + G V IS +  ++E   S+   G      +    
Sbjct: 510 LIEQDPMRIKQVLSNLVSNALKNTTQ-GYVEISYETGQSEARISVSDTGCGIPQEKLGVI 568

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +      +       +      R+            +    
Sbjct: 569 FERFEKTDSFVQGAGLGLSICKSIVEHMNGRIEVISAVGEGSTFTVTFP 617


>gi|322833864|ref|YP_004213891.1| Osmosensitive K channel His kinase sensor [Rahnella sp. Y9602]
 gi|321169065|gb|ADW74764.1| Osmosensitive K channel His kinase sensor [Rahnella sp. Y9602]
          Length = 898

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
           A+          L   L S + HD+ +P+  +    E+L                ++ Q 
Sbjct: 649 AETARLETEREQLRNSLLSALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQASQIRQQ 708

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKI 109
           +  ++      L   R+  G          + +I      + + +     +++    E +
Sbjct: 709 VLSTTRLVNNLLDMARIQSGGFNLRKEWQSVEEITGSALRMLEPVLAHDNIEIDLPKEMV 768

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163
            ++ +     ++L+NL   AH     G  + I            +  NG           
Sbjct: 769 LVNCDASLIERVLINLLENAHKYAGTGATIGIKATPLDEWLEMEVWDNGPGIPAGAEHTI 828

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +  R+  E   +        L 
Sbjct: 829 FEKFARGNKESAIPGVGLGLAICRAIIEVHDGRIWAENGPNGGARFRFRLP 879


>gi|320330256|gb|EFW86241.1| sensory box histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 982

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973


>gi|220927420|ref|YP_002502721.1| cyclic nucleotide-binding protein [Methylobacterium nodulans ORS
           2060]
 gi|219952894|gb|ACL63282.1| cyclic nucleotide-binding protein [Methylobacterium nodulans ORS
           2060]
          Length = 655

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQL 52
           + K       +  + AL  L + I HD  + +  +  +L+LL     E         MQ 
Sbjct: 266 LEKTQAALFQAQKMEALGGLSAGIAHDFNNLLTVVLGNLDLLRRAPEERRARLIDNAMQA 325

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +          L F R        VD    +  +  +++  +  D  + +    +   + 
Sbjct: 326 VEQGRKLTQQLLAFGRSQTLRPEVVDVTRLILGMNDMLKQSLRGDIGIVLDLAEDLWPVE 385

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTI-------SVQDSKNENIFSLKINGNLARFPE 162
            + A++ + L      A  ++P+GG+  I                  S+   G+    P+
Sbjct: 386 VDPAQLQIALINLAVNARDAMPKGGQFRIKTENVTTHDGKVAQSVAISVSDTGHGM-SPD 444

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +    +        +    V   A ++   +       H    +  L +
Sbjct: 445 VLARAFEPFFSTKEVGKGTGLGLPQVYGFAQQSNGSVRVTSEVGHGTTFTISLPR 499


>gi|116694841|ref|YP_729052.1| osmosensitive K+ channel histidine kinase [Ralstonia eutropha H16]
 gi|113529340|emb|CAJ95687.1| Osmosensitive K+ channel histidine kinase [Ralstonia eutropha H16]
          Length = 948

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 25/234 (10%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------EDEVMQLIRLSS 57
            ++ S  L + L + + HD+ +P+ ++    E +                 +++  R   
Sbjct: 702 LSMESERLRSSLLAAVSHDLRTPLTSLIGMAETMQRSDPGLAPSLAETVAAMLEQARRMR 761

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEKIDL 111
              +  L   +L             + ++                   V +S        
Sbjct: 762 TMVVNLLDMAKLQGREVRMSKEWQSVEELVGASLAAMREALEHHRVVVVDLSRVPLVECD 821

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIV 168
           +    ++L NL   A    P G ++ +S     +E   +++ +G         + F +  
Sbjct: 822 AVLIERVLCNLLENAAKYTPAGTEIRLSAAPVDDEIRIAVEDDGPGVPKGKERQIFEKFT 881

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPE-----IIDDH--NVVLSALLEK 215
            G  ES      +       +   +  R+  E                   L +
Sbjct: 882 RGERESATAGVGLGLAVCEAIVQAHGGRIWVEPAQRPDRPGGQAGARFLVALPR 935


>gi|324327074|gb|ADY22334.1| sporulation kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 801

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLP 795


>gi|308066930|ref|YP_003868535.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|297185563|gb|ADI24138.1| sensor histidine kinase kin99 [Paenibacillus polymyxa]
 gi|305856209|gb|ADM67997.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 758

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 12/221 (5%)

Query: 5   ICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIR 54
                 S  L  V  L + + H+I +P+  +   L+L        +    I    +  I 
Sbjct: 534 EELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQQNQVLNMKHNDIMMSELDRIN 593

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSR 113
           L     +I  K   + F        +  +  +       + +   +QV            
Sbjct: 594 LIVSEFLILAKPQAVHFQKKDVRYIVSDVISLLDSQAHLLGIIFNLQVTDEPALVYAEEN 653

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  ++ +NL   +  ++ +GG +TI +          ++  G      E  +++ +    
Sbjct: 654 QLKQVFINLLKNSMEAMSKGGIITIHLFLEGESVKIFIRDQGTGI-PAEMLSKLGEPFFT 712

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +   +K  L  E  +         L 
Sbjct: 713 NKETGTGLGLMVSQRIIQSHKGTLDIESTEGEGTTALVQLP 753


>gi|317129754|ref|YP_004096036.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474702|gb|ADU31305.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 475

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRL 55
           M K +     S        S I HD+ +PI  I     ++ +   +D     + + +I  
Sbjct: 236 MTKQLKQYRDSRR---HFISHISHDLRTPITYIKGYSAVMKDTVKDDKDDWKQNLNVIYK 292

Query: 56  SSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +      +  + L                     L  + +   ++ +   +  R+ +  
Sbjct: 293 EATRMENLVSDLFLLTKLEEGKIKLEKEKVPVASWLKSIYESRALMFNQKNIKHRLNIQD 352

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +++ +  +  ++   +      A    P+ G++ +S+     + IFS++  G+     
Sbjct: 353 ACKELIVFMDAYRLEQAIINIVENAIRHTPKEGEIELSLYKKSEQIIFSVRDTGSGINNK 412

Query: 162 E---KFTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +    +            +    V  +   +  ++            S  L 
Sbjct: 413 DLPHIWERFYKADTSRNRVINGGTGLGLAIVKEIVEAHGGKVKVASKVGEGTTFSIYLP 471


>gi|222053593|ref|YP_002535955.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221562882|gb|ACM18854.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 350

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 60/234 (25%), Gaps = 25/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         ++VA++     HD+ SP+  +   ++ L         + L+        
Sbjct: 117 TEEKKEKRHREEIVAMMT----HDLKSPLTVLMGYVQALRNEDGTKVHVSLLPCLDEMDR 172

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------------ 103
             LK + +      +    +GL        D  A+ +                       
Sbjct: 173 SALKLLAMIEDVLDAYRLEVGLLQTTCSWCDLSAILEACCHDMAREASSRGVRLNHNIES 232

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     + +++  N+   A    PR G+VT++      +   ++   G      + 
Sbjct: 233 GIPAMNVDGNQLSRVFANIIGNAVKFTPRKGQVTVNAWLGDEKLHVAVTDTGIGIPQKDL 292

Query: 164 FTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +       +   +   +  E         + ++ 
Sbjct: 293 PRIFNKYFRSKGANGFRGTGLGLTISKAIVEAHGGAIAVESAVGEGSCFTIVIP 346


>gi|29653714|ref|NP_819406.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii RSA 493]
 gi|153207222|ref|ZP_01945986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154707337|ref|YP_001425050.1| phosphate regulon sensor protein [Coxiella burnetii Dugway
           5J108-111]
 gi|165918708|ref|ZP_02218794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii RSA 334]
 gi|212213135|ref|YP_002304071.1| phosphate regulon sensor protein [Coxiella burnetii CbuG_Q212]
 gi|212218190|ref|YP_002304977.1| phosphate regulon sensor protein [Coxiella burnetii CbuK_Q154]
 gi|29540977|gb|AAO89920.1| phosphate regulon sensor protein [Coxiella burnetii RSA 493]
 gi|120576710|gb|EAX33334.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|154356623|gb|ABS78085.1| phosphate regulon sensor protein [Coxiella burnetii Dugway
           5J108-111]
 gi|165917643|gb|EDR36247.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain/His
           Kinase A (phosphoacceptor) domain protein [Coxiella
           burnetii RSA 334]
 gi|212011545|gb|ACJ18926.1| phosphate regulon sensor protein [Coxiella burnetii CbuG_Q212]
 gi|212012452|gb|ACJ19832.1| phosphate regulon sensor protein [Coxiella burnetii CbuK_Q154]
          Length = 252

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 56/228 (24%), Gaps = 24/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFM 67
               + +   + + H++ +P+  I   LE L +          ++ +     +      +
Sbjct: 23  QLERIRSDFVANVSHELRTPLTVIRGYLETLLKKEVRDSKSYQKIFQQMYQHSARMETII 82

Query: 68  RL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                                    + L  L    + I        +++           
Sbjct: 83  DDLLLLSRLESDDHPTEEKMNVAVPEILKTLCADAERISGEKQHFIQLKAEPNLYISGSE 142

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            E   +  N+ + +    P  G++ +      +  +FS+   G          +I +   
Sbjct: 143 EELKSLFSNIIINSVKYTPSKGRINVKWYRDDDHAVFSVVDTGIGIAKVHIP-RITERFY 201

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +    V  +   +   L  E       + +    
Sbjct: 202 RVDKARSRESGGTGLGLAIVKHVLMRHDGELHIESEPGKGSIFTCRFP 249


>gi|47564259|ref|ZP_00235304.1| sporulation kinase [Bacillus cereus G9241]
 gi|47558411|gb|EAL16734.1| sporulation kinase [Bacillus cereus G9241]
          Length = 801

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           K       S  L     L + + H+I +P+ A+   ++LL   E       + ++     
Sbjct: 572 KTEELLRKSEKLAVVGQLATVMAHEINNPLTAMKGFMQLLKSTENENNQGYINIVSSEIE 631

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                   +  +       +    +  + + ++        +S 
Sbjct: 632 RIESITTEFMAVAKPQVVKMQPNNISVLMDQVLMLLQPQAMMHNIKFRIDLNPGIPLISC 691

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                  N+        G      E+   + +
Sbjct: 692 EGNQLKQVFVNILKNAIESMPMGGEILIQLNILDNNQLSIRFIDQGCGI-PKERIPYLGE 750

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       +   ++ ++  E   +   ++   L 
Sbjct: 751 PFYSIKEEGIGLGLMICYKIIETHQGKIFIESEMNTGTIVEVTLP 795


>gi|323698718|ref|ZP_08110630.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323458650|gb|EGB14515.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 688

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 62/244 (25%), Gaps = 33/244 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +N       M+ + LL   + H+I +P+G I    +LL E         + + +I   + 
Sbjct: 432 ENQLIQAQKMESLGLLAGGVAHEINTPLGIILGYAQLLQEDVEAGSQIHQDLAIIEKQTQ 491

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSR 113
                +  +      T S    +   +        V          +          +  
Sbjct: 492 VCKKIVADLLGFSRQTQSAKREMCFNNSVMEAVSLVRHTLELDKVEIVTQLDDRYPIIYG 551

Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSLKINGNLARFPEKFTQI 167
           +     ++ +NL   +  ++   G   +               +  NG+     E   +I
Sbjct: 552 DPEKLKQVWINLLTNSRDAMGGQGGTILIRTRLDTPGGIVSLWVADNGSGI-AEEALKKI 610

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI---------------IDDHNVVLS 210
            D    +        +       +  ++   +                    +    V  
Sbjct: 611 FDPFFSTKAVDKGTGLGLSVSFGIIEDHGGDIHAASPVPEDFGFPPQARGGAEGGGTVFE 670

Query: 211 ALLE 214
             L 
Sbjct: 671 VNLP 674


>gi|303326351|ref|ZP_07356794.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302864267|gb|EFL87198.1| sensory box histidine kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 464

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 67/224 (29%), Gaps = 20/224 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59
               L A+  L + + H+I +P+ +I            E  D+      +++ +   +  
Sbjct: 221 RKEKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGQRFPEGSDDREAAAVMVREVDRLNRV 280

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRER 115
               +   R +      V     +  + ++I                      +  S   
Sbjct: 281 ITDLIGLSRPSDVRPRPVCLENVVAHVMRLIRQDAEQRNVRLEYRTSRRVPNVLVDSERM 340

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            + LLNL + A  ++P GG++T+ +  +K      ++  G           I D    + 
Sbjct: 341 GQALLNLCLNALDAMPDGGRMTLVIAKAKRRVCLMVRDTGKGIDPAAL-AHIFDPYFTTK 399

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEI----IDDHN-VVLSALLE 214
                +    V  +   +   +         D H   +    L 
Sbjct: 400 GQGTGLGLAMVHKIVAAHNGEISVYSQLAGEDGHGETIFRLWLP 443


>gi|226324179|ref|ZP_03799697.1| hypothetical protein COPCOM_01958 [Coprococcus comes ATCC 27758]
 gi|225207728|gb|EEG90082.1| hypothetical protein COPCOM_01958 [Coprococcus comes ATCC 27758]
          Length = 391

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           +  N    L S      L S I HD+ +PI AI   +E + +      E M+    +  +
Sbjct: 145 LRDNAEEKLKSDRESKELISNISHDLKTPITAIKGYVEGIRDGVADTPEKMEKYIGTIYN 204

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102
               +  +         +D+     +   +  +    D                     V
Sbjct: 205 KANEMDTLINELTLYAKIDTNRIPYNFAPLSVNDYFNDCAEDIEMELDSKNVEFGYFNYV 264

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFP 161
               + I    +  +++ N+   +   + R   +    V+D  +     L+ NG      
Sbjct: 265 EGDQKIIADPEQLKRVINNIVSNSLKYMEREHGLINLRVKDVGDFIQVELEDNGKGIAAK 324

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  ++     +    V+  ++ K
Sbjct: 325 DLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEDHGGKIWATSREGVGTVMYFVIRK 383


>gi|75907566|ref|YP_321862.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701291|gb|ABA20967.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 576

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 75/229 (32%), Gaps = 17/229 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
           +        ++ +  L S I HD+ + +  I  +++LL          +V+  +  +   
Sbjct: 204 EAQLLRSQRLESIGTLASGIAHDLNNILTPILMAVQLLQMKLHEPQVQKVLNTLESNVKR 263

Query: 60  AIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               L+    F R   G    V     + +IEQ+++   +     Q         +S + 
Sbjct: 264 GANLLRQVLSFARGIEGKKTIVPVRKLILEIEQIVQQTFSKSIICQTYIPENLWYVSGDT 323

Query: 116 ---AKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFPEKFTQ 166
               ++L+NL + A  ++P GG + I+          K+    S++  G       +   
Sbjct: 324 TQLHQVLMNLVLNARDAMPNGGILKITADNVVLSPQGKHYIKLSIEDTGLGIPAKIQKQI 383

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +     +    V+ +   +   +  +  +         L 
Sbjct: 384 FEPFFSTKEVGKGTGLGLSTVLNIIDNHGGSINVQSTEGKGTRFQVYLP 432


>gi|116618820|ref|YP_819191.1| Signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116097667|gb|ABJ62818.1| Signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 366

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 71/241 (29%), Gaps = 29/241 (12%)

Query: 1   MAKNICFNLSSMDLVALLC------SRICHDIISPIGAIHNSLELL-----DEVGIEDEV 49
           + + +   +    L AL+       S + H++ +P+  +   +ELL     D+  + ++ 
Sbjct: 118 LTRILNRTID--RLQALISAQQQFVSDVSHELRTPVTIVKGHMELLNRWGKDDPEVLEDS 175

Query: 50  MQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106
           ++              + + L       VD++  + D+   +       K +   ++   
Sbjct: 176 IKSSLAEVQRMETLINEMLNLTRAEQIPVDNVKEITDVGGTMHRVYDNFKMIHPDFSFTL 235

Query: 107 --------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                             +IL+ L   A        ++  ++  + N     ++  G   
Sbjct: 236 DDDLSTKARVKIRQDHMEQILIILADNAVKYSLDRHEIHFALSQTANRVEIGVQDFGEGL 295

Query: 159 RFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +  +    F +    +           +       L       +  E  +    + +  L
Sbjct: 296 KPEDAKRVFDRFYRVDKARSRAKGGTGLGLSIAQRLVEAYGGTIALESAEGSGSIFTVYL 355

Query: 214 E 214
            
Sbjct: 356 P 356


>gi|332800511|ref|YP_004462010.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332698246|gb|AEE92703.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 590

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57
           ++I        +     + + H++ +P+  I +  E L +  +E+  +           +
Sbjct: 347 QDITKQHRLEAMRKEFVANVSHELRTPLTTIKSYAETLLDGALEEAEISRQFTSVINDEA 406

Query: 58  MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108
                 +  +        +        +D    L ++  ++  +     + ++ +   E 
Sbjct: 407 DRMTRLVSDLLELSRLDNKETKWDMKPIDIGTILKNVITKMDVNIKRKGQTIKANIPEEL 466

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
            ++  +     ++  N+   A+   P GGK+ I V+ ++     + K  G      +   
Sbjct: 467 PEVFADNDKVEQVFQNILSNAYKYTPEGGKIYIDVEYAEKMVKVTFKDTGVGIPKEDLPR 526

Query: 163 KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +      +    +       +   +   +           +   + 
Sbjct: 527 IFERFYRVDKTRSREMGGTGLGLSIAREIVQAHGGEISISSELGKGTSVIIQIP 580


>gi|307825269|ref|ZP_07655489.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307733725|gb|EFO04582.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 885

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 23/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQ 51
           N   +++ + L+  + S I H++  P+ AI +  +            L     I D+  Q
Sbjct: 650 NELAHVTRLGLMGEMASGIAHEVNQPLSAISSYTQVSLNLINIEPPDLARLTEILDKTQQ 709

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKID 110
               +        +F++         D    + +   +   +    + ++          
Sbjct: 710 QALRAGRIIHRMREFVKSHAQKRSVADVNNLIHECAGLCVGELKQNNIKLTFELKNNLPP 769

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFP 161
           +  ++ +I   +      +  +L    +               N+    +K NG      
Sbjct: 770 VHVDQIQIEQVIINLIRNSVDALKNLPEKQQRQLTISSRLTLNNDIQVKVKDNGAGI-DE 828

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++  +I+     +  D   +       L   ++  L               L 
Sbjct: 829 DQKQKILTPFYTTKADGMGMGLSITRSLVEAHEGTLNFNSKAGKGTTFYFTLP 881


>gi|283850505|ref|ZP_06367793.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574076|gb|EFC22048.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 836

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 69/231 (29%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +       +  LVA+  L + + H+I +P+G I    ELL +   + +  + + +    
Sbjct: 596 RRMREKMRQTEKLVAVGKLAAGLAHEINNPLGVISCYAELLRQSLTDPQAREDLAVIERH 655

Query: 60  A-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEK 108
           A          L F R      G  D    +  I ++ +      +        +     
Sbjct: 656 AVMAKKVLRDLLDFARPRQATPGPCDLAALVASISRIFDIQAQSRRVRLSSRASAGLPLA 715

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFT 165
              +    ++L NL + A  ++       +               +  NG     PE   
Sbjct: 716 NADASALEQVLSNLLLNALDAVTPDAGEIVLEAGAGPDDRTVYLRVADNGPGI-APEDAP 774

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +        +    V  L  +   R+  E       V +  L 
Sbjct: 775 RIFDPFFTTKEAGRGSGLGLAVVYGLLRDMNGRIEVENS--GGAVFTVTLP 823


>gi|297568040|ref|YP_003689384.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296923955|gb|ADH84765.1| integral membrane sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 624

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 64/244 (26%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
            K     L +  + A+  L   + HD  + +  I    EL    L     E   ++ I  
Sbjct: 234 EKMAAQLLQAQKMEAVGTLAGGVAHDFNNILTPIIGYCELAKMQLSPAEQEKMQVEEILQ 293

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS--- 112
           ++  A   ++ +             + L  I +    F+       +  + +        
Sbjct: 294 AARRARDLVQQILTFSRRQEQERVRLELQPIIKENIKFLRSSLPSTIEISQDLAADCGQV 353

Query: 113 ----RERAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLK 152
                +  +++LNL   A  ++                    ++        N    ++ 
Sbjct: 354 LADLTQIQQVILNLCTNAAQAMEEQGGVLEINLRRVEIGDSQQLAGEPLPPGNYACLTVS 413

Query: 153 INGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G          +I +    +        +    V  +   +  RL          V+ 
Sbjct: 414 DTGVGMDGV-TRQRIFEPYFTTKEQGKGTGLGLAMVHGIVRGHGGRLAVYSEPGKGTVVR 472

Query: 211 ALLE 214
             L 
Sbjct: 473 VFLP 476


>gi|229004155|ref|ZP_04161956.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4]
 gi|228757016|gb|EEM06260.1| hypothetical protein bmyco0002_11200 [Bacillus mycoides Rock1-4]
          Length = 466

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 57/234 (24%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MA ++              + + H++ +P+  I    E + +       + +  QLI   
Sbjct: 228 MANSLEMEDVKRK---EFSANVSHELRTPLSYIKGYSEAILDGVAKGQQQSKFTQLIHRE 284

Query: 57  SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +      +  +                       +  + +  ++      +     +   
Sbjct: 285 AGRMQRLVHDLLDLAQLEGDHFPLKKQPIVFAQLIEDVLETYELKCMEKELYISTDLDPD 344

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164
                      ++L NL   A     + G ++I ++    +    +K  G          
Sbjct: 345 IIVTIDEDRMQQVLHNLLDNAIRYTNQNGNISIQLKKKDRQCELKIKDTGIGIDAEHLEQ 404

Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +                +    V  + H +      E        +   L 
Sbjct: 405 LGERFYRVDKGRSRRHGGTGLGLAIVKQIVHIHDGEWRVESEKGKGTTVIIKLP 458


>gi|224541343|ref|ZP_03681882.1| hypothetical protein CATMIT_00503 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525780|gb|EEF94885.1| hypothetical protein CATMIT_00503 [Catenibacterium mitsuokai DSM
           15897]
          Length = 457

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 26/233 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +AK                S + H+  +P+ AI     +L           +   +I  +
Sbjct: 219 LAKQETIRQQ-------FISDVSHEFQTPLTAISGFATILKNENLTDEQRKKYADIILFN 271

Query: 57  SMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           S       K M                 +         +   +          + +    
Sbjct: 272 SNRLSHLSKNMLQLTLLDGEDTALDKTEFPLIEQLNRVIEMEDNAALSKDIEIEFIHPKK 331

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                       ++ +NL   A       G VT+ V+ +  E     +  G         
Sbjct: 332 EFIIEADESRMEQVWINLLSNAIKYTNEHGVVTVEVRRTPTELQVRFEDTGVGMSQDAIS 391

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +   TI+ + +    V  +   +  ++  E  +D   V +  + 
Sbjct: 392 HIFERFYRQDKSRTIEGNGLGLSIVKRIIDLHHYKIDVESQEDVGSVFTVYIP 444


>gi|261404373|ref|YP_003240614.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261280836|gb|ACX62807.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 543

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 70/222 (31%), Gaps = 9/222 (4%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQL 52
           M +      ++  L     +   I H++ +P+  +   L+L      L    +    ++ 
Sbjct: 315 MKRTEEVLRNTEKLVFAGQVAVSIAHEVRNPLTTVKGMLQLANKDAALRHYDLIMSELER 374

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
             L     +I  K     F      + L  +  +  +      +            +   
Sbjct: 375 ANLMVGEFMILGKPQAAVFKLENCGEILEEVLHLFAIQASLGGIKMTQCFGRNATILCDR 434

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++ LN+   A  +LP GG + I +         +   NG+     +   +I +   
Sbjct: 435 NQIKQVFLNILKNAMEALPYGGNIHIQMDVEDGYQRVTFTDNGSGM-TEDVLRRIGEPFH 493

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  D + +    V  +   +  R++    ++    +   L 
Sbjct: 494 TTKPDGNGLGIMIVQRIMESHNGRIVIRSEEERGTSVEIRLP 535


>gi|296502578|ref|YP_003664278.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296323630|gb|ADH06558.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 357

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 240 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 352


>gi|228909460|ref|ZP_04073285.1| hypothetical protein bthur0013_36120 [Bacillus thuringiensis IBL
           200]
 gi|228850237|gb|EEM95066.1| hypothetical protein bthur0013_36120 [Bacillus thuringiensis IBL
           200]
          Length = 510

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQQWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  RL      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 500


>gi|156933160|ref|YP_001437076.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter sakazakii ATCC BAA-894]
 gi|156531414|gb|ABU76240.1| hypothetical protein ESA_00970 [Cronobacter sakazakii ATCC BAA-894]
          Length = 973

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 71/240 (29%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 477 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVDRLVTAM 536

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
             S+ + LK +     ++      + +   E    + ++                    +
Sbjct: 537 HNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYQPLVVRKQLGLYCFI 596

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +       +       +++ NL   A       G + + V    +   F ++  G     
Sbjct: 597 EPDVPMSLLGDPMRLQQVISNLLSNAIKFTDI-GCIILHVGTQGDYLCFRVRDTGVGIPA 655

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +         +  + 
Sbjct: 656 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTEPGMGSQFTIRIP 714


>gi|109896557|ref|YP_659812.1| osmolarity sensor protein [Pseudoalteromonas atlantica T6c]
 gi|109698838|gb|ABG38758.1| periplasmic sensor signal transduction histidine kinase
           [Pseudoalteromonas atlantica T6c]
          Length = 432

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 9/220 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           MAK I       D  ALL + I HD+ +P+  I  + E+L    +   E  V  +  ++ 
Sbjct: 212 MAKGIK---QLEDDRALLTAGISHDLRTPLTRIRLATEMLPEAQDWLKEGIVNDIEDMNE 268

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +         +        VD    + D  QV       +  + +              +
Sbjct: 269 IIDQFINYVRQDQQESMVGVDVNDLIRDAVQVRNIEEHHNIHLHLKPIPTACMRRVALKR 328

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES 174
           +L NL   A        ++      ++N   FS++  G      +    F     G+   
Sbjct: 329 VLDNLIENAFRYGSEDIEIRSGYDKARNLLFFSIRDFGPGIPDTQIEGLFKPFTQGDKAR 388

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +  +   +   +  +   +  ++ S  + 
Sbjct: 389 GSLGSGLGLAIIKRIVDMHSGEVTLKNHPEGGLIASIFIP 428


>gi|330995065|ref|ZP_08318982.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|332879513|ref|ZP_08447208.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|329576641|gb|EGG58144.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|332682479|gb|EGJ55381.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 491

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLS 56
           M KN+      +D       S + H++ +PI AI  SL+LL++    G+  E  +L R  
Sbjct: 256 MLKNVT-EFQELDTAKTTFISTVSHELKTPISAIMMSLQLLEDKRVGGLNPEQEELSRSI 314

Query: 57  SMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSW 104
             ++   L      + +    +G +     +    ++I+  I  ++        +V+V +
Sbjct: 315 KENSERLLSITGELLNMTQVESGKLQLKPKITKPIELIDYAIKANRVQAEKFGIQVEVDY 374

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160
             +   L  +  KI   L  +   ++    +         Q   N     ++  G     
Sbjct: 375 PEKIGKLFVDSEKIAWVLTNLLSNAVRYSSEAGRVVIGARQQDDNHIAMFVQDFGKGIDP 434

Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +          + +    +           +   L  +       V + +L 
Sbjct: 435 RYHESIFEHYFRVPGTKVQGTGLGLSISRDFVEAHGGTLTVDSELGKGSVFTMVLP 490


>gi|319901154|ref|YP_004160882.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319416185|gb|ADV43296.1| multi-sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 807

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 55/228 (24%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK        +    L  + + H+I +P+ AI     L+   ++     E + ++  ++ 
Sbjct: 580 AKEKAETADRLKSAFL--ANMSHEIRTPLNAIVGFSGLVSETEDPDERKEYISIVEANNN 637

Query: 59  SAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +                  G          L    Q+           +      
Sbjct: 638 LLLQLISDILDLSKIEAGTFDFMVGDINVNQLCTDLVTSLQMKLKPGVELVFDRNLPEYH 697

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       ++L N    +     +G       +       F +   G      ++    
Sbjct: 698 IVSDRNRLYQVLSNFVNNSVKFTFKGSIKVGYEKVDGMRLRFYVSDTGLGIAPDKQKAVF 757

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +  +    +  +  +        +L 
Sbjct: 758 DRFVKLNSFVPGTGLGLSICKSIIQQLGGTIGVDSEEGKGSCFWFILP 805


>gi|301060210|ref|ZP_07201077.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300445722|gb|EFK09620.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 680

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-- 57
            K       +  L AL  L + I HD  + +  +  +++L+ +   E   ++        
Sbjct: 294 EKADQLRKRTQKLEALGTLSAGIAHDFNNILAVLLGNVQLVMDDVPEGSRVRNNIDEMTK 353

Query: 58  ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKI 109
                       L F R        +     + +  + +   I     +   +  T   +
Sbjct: 354 AILLARDMIKQILTFCRQGEQSRSPLSLTPVVKESVKFLRSSIPATIEIIDHIEETDLVM 413

Query: 110 DLSRERAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKI 153
               + +++++NL   A  ++                    K    V           + 
Sbjct: 414 ADPTQISQVMMNLGSNAAYAMDNRTGILELTLKNVTIDEHHKDRFRVPFEGRYVKMKFRD 473

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G+        +++ D    +  +     +    V  +   +   +  E       V   
Sbjct: 474 TGSGMPSY-VLSRLFDPYFTTKPEGKGSGMGLAVVHGIVESHGGVIWVESEPGKGAVFKM 532

Query: 212 LLE 214
           L  
Sbjct: 533 LFP 535


>gi|222100696|ref|YP_002535264.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359]
 gi|221573086|gb|ACM23898.1| Histidine kinase precursor [Thermotoga neapolitana DSM 4359]
          Length = 473

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 58/238 (24%), Gaps = 30/238 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
                +  M       + I H++ +P+ AI    E +    E    D + + + +    +
Sbjct: 230 ERLKRIDRMK--TEFVANISHELRTPLTAIKAYTETMYNSLEELDTDTLKEFLEVVLDQS 287

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------T 105
                 +     ++      + +   +  I + +         +                
Sbjct: 288 NHLENLLNELLDFSRLERKALQIKKEKTNICELLESAVGAIKEFAASQGVKVFLEKKVPC 347

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPE 162
            E         ++LLNL         +              +N  +  ++ NG       
Sbjct: 348 FEAEVDPTRMKQVLLNLLSNGVKYSKKDEPEKYVKVVLDKDENGILIVVEDNGIGI-PEH 406

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +            +    +       +   +  R+  E  +         + 
Sbjct: 407 AREKIFEQFYRVDSSLTYEVSGTGLGLAITKEIVELHGGRIWVESEEGKGSRFFVWIP 464


>gi|196231544|ref|ZP_03130402.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224397|gb|EDY18909.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 534

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 57/238 (23%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +       +    L AL  + + + HD  + +  I    ELL     +            
Sbjct: 161 LRTTQQTVVQQERLRALGEMVTGVAHDFNNALSMILGYAELLQHECRKHVAADKFVDYAH 220

Query: 56  --------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   ++       +F R                  + V                  
Sbjct: 221 TIVTASLDAAEIVNRLREFHRPTEPGESREPLPFNAIVEQAVTFTRPRWSAETIARGMPI 280

Query: 108 KIDLS-----------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           ++ +             E  ++L NL   A  ++P+GG++ +  +        ++   G 
Sbjct: 281 EVMMELSPIPPLRGNAPELREMLTNLIFNAVDAMPQGGRILLRTRAVGARIELAVVDTGT 340

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +             +    V  +   ++  +  E         +    
Sbjct: 341 GMTEEVRRRCLEPFFTTKGDRGSGLGLSMVYGIVERHEGTVTIESTLGRGTTFTFSFP 398


>gi|323212345|gb|EFZ97168.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
          Length = 646

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 150 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 209

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 210 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 269

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 270 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 328

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 329 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 387


>gi|159901176|ref|YP_001547423.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894215|gb|ABX07295.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 413

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 61/236 (25%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +A++             L + I HD+ +P+ A+   +E L +       ++   +     
Sbjct: 174 LAQSAERQHELEQSRRDLIAAISHDLRTPLTAVRAMIEALADGVVTEPAMQQRYLNSANS 233

Query: 56  SSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              +    +  +                     D +       Q       V  R  V+ 
Sbjct: 234 QLTNLSTLVDDLFEMAQLDAGVLRLELERASLGDLISDTLSNLQPHAAAHGVQLRGSVAP 293

Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             + + ++  + + +L NL   A    P  G + I  Q         +   G   +  + 
Sbjct: 294 EADLVLMNAPKLQRVLYNLISNALRHTPSDGTIAIQAQTINQTVHVEVSDTGEGIQPDDL 353

Query: 164 FTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +    V  +   +   +  E    H       L+
Sbjct: 354 PHIFERTYRGEKSRSRDYGGAGLGLAIVRAIVEAHGGNVWVESQPQHGARFVFTLQ 409


>gi|30020096|ref|NP_831727.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29895646|gb|AAP08928.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 348

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 114 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 170

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 171 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 230

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 231 YVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 290

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   +   +  E  +         + 
Sbjct: 291 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHHGEIKVESEEGKGTEFIVRMP 343


>gi|194336297|ref|YP_002018091.1| multi-sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308774|gb|ACF43474.1| multi-sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1126

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 68/243 (27%), Gaps = 31/243 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---------EVMQLI 53
           ++    L  M+LV  L   I HD  + +  I  ++E+  +               ++   
Sbjct: 740 QSALTQLQKMELVGQLAGGIAHDFNNMLAVIIGNIEMAMDQEAAYEEPLPFNLKNILNAA 799

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             S+      L F R        ++    +  +  V+   I  +  +       +  +  
Sbjct: 800 TRSAHLTRQLLAFARKQPVMPLVLELNTMVETMLSVLRRLIGENITIVWIPDTHRCLVKV 859

Query: 114 ER---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKIN 154
           +     +IL+NL + A  ++                          +   +    S++ N
Sbjct: 860 DPSQIDQILVNLCINARDAIAGIGKITIQIGRLCEKKTLVPPLHPCKIVGDYVTLSVRDN 919

Query: 155 GNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E    I +    +        +    V  +  +N   L  +            
Sbjct: 920 GCGI-EKEHLPHIFEPFFTTKEPGKGTGLGLSTVYGIVKQNNGCLDYKSEPGKGSTFKIH 978

Query: 213 LEK 215
           L +
Sbjct: 979 LPR 981


>gi|291518265|emb|CBK73486.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain
           [Butyrivibrio fibrisolvens 16/4]
          Length = 384

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLI 53
           +  N    L    +  AL+ S I HD+ +PI AI    E + +   +        +  + 
Sbjct: 135 LKNNAKDRLEDEAEQRALI-SNIAHDLKTPITAIKGYAEGMLDGVADTPEKQEKYIRTIY 193

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQ 101
             ++    +  +    +   T  +                       +    I +D    
Sbjct: 194 NKANEMNTLINELTLYSNIDTNKIPYNFQKLNLSSYFTDCIEELGMDLENQHIRLDYSNF 253

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLAR 159
           V      I    +  +I+ N+   +   +       I   V+D  +     +  NG    
Sbjct: 254 VDPEVLIIADPEQLGRIIHNIVSNSVKYMRADVPSRIGIIVKDVGDFVQIEISDNGKGIA 313

Query: 160 FPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +           I    V  +  ++  ++     ++    +  ++ 
Sbjct: 314 TQDLPYVFDRFYRADTSRNSAAGGSGIGLSIVKKIVEDHGGKIWVTSKENQGTTMYFVIR 373

Query: 215 K 215
           K
Sbjct: 374 K 374


>gi|156740839|ref|YP_001430968.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232167|gb|ABU56950.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 722

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLEL-----------LDEVGIEDEVMQLIRLSSMSAIIRLKF-- 66
           S + H++ +P+  ++  ++L           L +  +     Q+ +LS   + +      
Sbjct: 496 SMVSHELRNPLHTLNGFVKLVLQGRAGPLTALQKDFLSMADEQIEQLSGRVSELLEYNRF 555

Query: 67  ----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
               + L          + G      +  +   +    +          ++   ++L NL
Sbjct: 556 KAGRLALHPDVGDLSLLIAGTVSRLSLQAEQQQLSLVNETPHLPLCRFDNQRIGQVLTNL 615

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179
              A  + P GG + IS      E    +   G      E    F +             
Sbjct: 616 IENAMKATPAGGTIKISADVHDQEVWVRVSDTGIGIPSSELGKIFQRFYQVAKHRRAQGT 675

Query: 180 --DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +  R+  E  +      +  L 
Sbjct: 676 HMGLGLAICQQIVEGHGGRIWVESEEGVGTTFTFTLP 712


>gi|324327542|gb|ADY22802.1| sporulation kinase A [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 510

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 63/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I               + +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHLDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   V+   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500


>gi|310822109|ref|YP_003954467.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395181|gb|ADO72640.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 713

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV-------MQLIR 54
               L +  L    +L + I H+I +P+G +    E +L ++G            +  I 
Sbjct: 461 ETQLLRAEKLATVGVLAAGIAHEIGTPLGVVRGRAEYVLGKLGPAHPQAAGVGVIIDQID 520

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             S +    L F RL       V     L D  E +  +       +++        L+ 
Sbjct: 521 QVSRTIRQLLDFSRLQPAVARPVALSTLLRDVYELLHLEAERQQVVLELDLPEGLPLLAA 580

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISV----------QDSKNENIFSLKINGNLARFPEK 163
           +  ++   L  +   +                       +      S++ +G       +
Sbjct: 581 DPDQLQQVLVNLVLNACDACSAGGKVHLAAAAPDGSSMGAWGFVTLSVRDDGCGIPVESR 640

Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +    V  +   +  R+  E    H    + L  
Sbjct: 641 NQVFDPFFTTKKRGQGTGLGLAIVAQIVRNHGGRVELESEPGHGTCFTLLWP 692


>gi|300088023|ref|YP_003758545.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527756|gb|ADJ26224.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 723

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSS-MDLVA------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           A+     + + M L A      ++ S I H+I +P+  +    +LL +     E ++   
Sbjct: 484 AETERRKMEARMALAAHQASIGVMASGIAHEINNPLTGVIGFSQLLAQRPDLPEDIRDDA 543

Query: 55  LSSM--------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWT 105
                            L F           D    + +  + +  +       + +  +
Sbjct: 544 AIIDSGAQRVAGIIRRLLTFADPRPPRQEPADLNNLVSETLKSMAAELEHHGIELILELS 603

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGG------KVTISVQDSKNENIFSLKINGNLAR 159
            E   +  + ++I      +   ++          ++T++ +        +   NG    
Sbjct: 604 PELPQVITDASQIQQAFLNIIKNAVTELHKLEGAKRLTVTTEVRGRMTAVTFADNGPGIP 663

Query: 160 FPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +     +       +   N   +      +   V +  L 
Sbjct: 664 PDNLPRIFDPFFTTREVGQGTGLGLSVCHGIITRNSGCITAANRPEGGAVFTVELP 719


>gi|224535913|ref|ZP_03676452.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
 gi|224522473|gb|EEF91578.1| hypothetical protein BACCELL_00777 [Bacteroides cellulosilyticus DSM
            14838]
          Length = 1344

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 20/231 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + K     +S M +   +   I H++ +P+  I   L+ L          + +     + 
Sbjct: 817  LDKEKQEEISQMKIRFYV--NISHELRTPLTLIVAPLQELLSRISGHWEHEQLLYIQRNT 874

Query: 61   IIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
               L  +     Y         +  +        +           +           ++
Sbjct: 875  NRLLHLVNQLMDYRRAELGIFELRLVSANAYKRVLNSFMNYESLSKKKDIDYNFYTELQD 934

Query: 115  RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +  +    +           A      G  +T+ +     + +  +   G      EK  
Sbjct: 935  KELLFDENYLDLIVNNLLSNAFKYTEEGESITVKLYQEAGDLVLQVTDTGIGI-PKEKQE 993

Query: 166  QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +   +  S  +   I    V  L   +  R+  E         S  L 
Sbjct: 994  KIFERFYQVESGREGSGIGLSLVQRLVELHHGRIELESEPGKGSTFSIYLP 1044


>gi|218233444|ref|YP_002368453.1| sporulation kinase A [Bacillus cereus B4264]
 gi|218161401|gb|ACK61393.1| sporulation kinase A [Bacillus cereus B4264]
          Length = 510

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  RL      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 500


>gi|119491630|ref|ZP_01623502.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453359|gb|EAW34523.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 397

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 20/225 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------- 62
               L +   S + HD  +P+  I  S ELL +        Q   +              
Sbjct: 161 EQHQLTSEFVSMMSHDFRNPLSTILLSTELLRDWEQSLSKEQKSSIFQRIRSAGKSLVQL 220

Query: 63  -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115
                 +    +           +     + V E  +    + QV    +          
Sbjct: 221 LDEVILVGQADVERLECLPTPLDLESFCQQLVEEARLEASSQHQVELKMQGEFAETLWDE 280

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD 169
                I  NLF  A    P+GG + + V    N  IF L  +G      +    F     
Sbjct: 281 SLLRHIFSNLFANAIKYSPQGGIIRLEVMAQDNIAIFDLIDHGIGIPPHDLVKLFQAFHR 340

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    I    +    V      +   +  E     +   S  L 
Sbjct: 341 ASNVGKISGTGLGLAIVQRCVEAHGGEISVESEVGVSTTFSVQLP 385


>gi|269838412|ref|YP_003320640.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
            thermophilus DSM 20745]
 gi|269787675|gb|ACZ39818.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
            thermophilus DSM 20745]
          Length = 1448

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 69/250 (27%), Gaps = 38/250 (15%)

Query: 1    MAKNICFNLSSMDL-----------VALLCSRICHDIISPIGAIHNSLELL----DEVGI 45
            +A      + +  L            A L S   H++ +P+  +    +LL     +  +
Sbjct: 1187 LADRAALAIENAQLYREAQSAVRVREAFL-STASHELKTPLTTVKGYGQLLLRFLKQPTL 1245

Query: 46   EDEVM--------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQV 89
            + E +                     L   R+  G          L           EQ 
Sbjct: 1246 DREHLIKLATHLRDQTDRFETLVNDLLDVSRIQQGRLALRPQPTELTELARSVLARFEQS 1305

Query: 90   IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
             +   A    +        +       ++L NL   A    P GG+V +SV+   +E   
Sbjct: 1306 PDRTPAHRLVLDAPEPIHGVWDPVRLDQVLTNLISNALKYSPDGGEVRLSVRRHGDEAEL 1365

Query: 150  SLKINGNLARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
            ++   G      E   Q+      +      +    +  +    +  ++   +  E  + 
Sbjct: 1366 AVSDEGIGISASE-QAQLFQPFSRTVRARLEMGGTGLGLFISRQIVEQHGGTITLESTEG 1424

Query: 205  HNVVLSALLE 214
                 +  L 
Sbjct: 1425 VGSTFTVRLP 1434


>gi|229197751|ref|ZP_04324470.1| hypothetical protein bcere0001_32890 [Bacillus cereus m1293]
 gi|228585696|gb|EEK43795.1| hypothetical protein bcere0001_32890 [Bacillus cereus m1293]
          Length = 516

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 340

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 341 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   V+   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 506


>gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
 gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
            17393]
          Length = 1342

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69
             I H+  +P+  I + LE+L E      +    +  I  +++     +  +       + 
Sbjct: 829  NISHEFRTPLTLIVSQLEMLMERNDIQPLVYNKLVNIHRNTLRMKRLITELLDFRKQEQG 888

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLNLFM 124
               +  S   +    D   +     A  K++ + +       E      +  K++ NL  
Sbjct: 889  FEKFKYSKQDIYAFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVVQLEKVIYNLLS 948

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181
             A      GG V++SVQ+ +N  +  +   G         + F +    +         I
Sbjct: 949  NAFKYTSLGGTVSLSVQEYENSVVILISDTGIGIAEKSLDKIFDRFYQVDSTDNQKGTGI 1008

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +K ++    ++         L 
Sbjct: 1009 GLALAKSIIEAHKGKISVRSMEGKGTTFVVELP 1041


>gi|206976128|ref|ZP_03237037.1| sporulation kinase A [Bacillus cereus H3081.97]
 gi|206745582|gb|EDZ56980.1| sporulation kinase A [Bacillus cereus H3081.97]
          Length = 510

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   V+   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500


>gi|220918716|ref|YP_002494020.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956570|gb|ACL66954.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 523

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 78/230 (33%), Gaps = 18/230 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            + +   L  +  + A+  L   + H+I +P+G I    +L+   +    + E ++LI+ 
Sbjct: 282 EREVSRRLFHAEKMSAVGQLAGGVAHEINNPLGGILAFAQLMSREERSPEDMESLRLIQD 341

Query: 56  SSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEK 108
           ++  A   ++ +              VD    + D   ++   +   +   V        
Sbjct: 342 AANRAKRIVESLLRFSRRPREEERGPVDLRQVVDDALFLLSPQLRAGRFEVVRRFEPAVA 401

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
           I    +  ++++NL + A  ++   G VT++V  +       S+   G      +   +I
Sbjct: 402 IGNGNQLQQVVVNLLVNALQAMGDRGTVTVAVGPAAPGRLRLSVADTGPGV-PEDAALRI 460

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSALLE 214
            +    +  +     +       +  E+   +  E             L 
Sbjct: 461 FEPFFTTKPEGQGTGLGLSICYQIVEEHGGTIRLEQPGPHRGACFVLELP 510


>gi|85860827|ref|YP_463029.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85723918|gb|ABC78861.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 506

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 67/228 (29%), Gaps = 22/228 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L        +   + H+I +P+G+I  + + L      +E  +++ +     
Sbjct: 284 LEREKSMMLEE------MAPVLAHEIKNPLGSIKGAAQYLATEIDSEENRKILNVIIEET 337

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
                 M     Y            +E +++  +++ +  Q+          +E      
Sbjct: 338 DRLNGVMSQFLNYAKPYRYEKTEQKVEPMLQKILSLVEARQIIDRVAIKKEIQENLPAIR 397

Query: 116 ------AKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  +++LN+   A  ++P GG          ++++      ++  G      +   
Sbjct: 398 IDSEKIMQVILNIVFNAIEAMPEGGTLTLGARRIEKENREGIEIMVRDTGKGIAREDLKN 457

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            I      +      +       +   +   +  +   D        L
Sbjct: 458 -IFKPFYTTKERGVGLGLAICNRIVRSHGGEIKVKSFVDKGSTFRIRL 504


>gi|89897548|ref|YP_521035.1| hypothetical protein DSY4802 [Desulfitobacterium hafniense Y51]
 gi|89336996|dbj|BAE86591.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 748

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIE--------------DE 48
               + +  + A  LL S + H+I +P+  +    E L +   E                
Sbjct: 510 EARMIETDKMAAIGLLASGVAHEINNPLAVVAAYSEDLLDRLDEEDAAPSQEEIKLGFKT 569

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105
           V++ I          L F R     +  +D  I       ++E       +    Q   +
Sbjct: 570 VLEQIVRCKQITAQLLGFARKRDSGSDLIDIGIASAQTLGLLEHKARQKHLHLHFQGEDS 629

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +    E  +++LNL   A  +    G + +       +  F ++  G      +   
Sbjct: 630 LFALGNENEWQQVVLNLVTNALDASAEEGIIELRSYREGPKIQFIIQDYGEGI-PQDHLK 688

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D    +        +  Y    +  +    ++ E  +     ++  L 
Sbjct: 689 KVFDPFFTTKSLGQGTGLGLYVSYGIIAKMHGEMILESTEGQGTKVTISLP 739


>gi|147675602|ref|YP_001217458.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae O395]
 gi|262167886|ref|ZP_06035586.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae RC27]
 gi|146317485|gb|ABQ22024.1| C4-dicarboxylate transport sensor protein [Vibrio cholerae O395]
 gi|227013823|gb|ACP10033.1| putative C4-dicarboxylate transport sensor protein [Vibrio cholerae
           O395]
 gi|262023613|gb|EEY42314.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae RC27]
          Length = 597

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 67/236 (28%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGN--LAR 159
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGPSVGI- 536

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             E    + +    +  +   +       + H  +  L            +  L +
Sbjct: 537 --ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLPR 590


>gi|326391417|ref|ZP_08212954.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325992552|gb|EGD51007.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 461

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 66/219 (30%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   + S I H++ +P+  + + +E + +       E ++ +    +  I  +K +    
Sbjct: 242 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGVWEPTHERLKSLNEEVLRLINIVKDLETLN 301

Query: 72  GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +   +           + +  +    +        +    +             A++ +
Sbjct: 302 KFESDMLKLNKIKFDVSELVKNILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 361

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++     GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 362 NLISNSNKYTLVGGKIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 421

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +   +  ++  E   +     +  + 
Sbjct: 422 TGGSGIGLSIAKAIVLAHGGKINVESEINKGSKFTVKIP 460


>gi|323698795|ref|ZP_08110707.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323458727|gb|EGB14592.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 410

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 62/236 (26%), Gaps = 32/236 (13%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVMQLIR-- 54
            +  +    +L   + H+I +P+ +I    E L            +     ++++     
Sbjct: 172 QAERMATVGVLAEGVAHEINNPLTSIRGFAEALYGHLDRLGVCLKDGEPCTDLLETFEEY 231

Query: 55  -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------- 102
                         +  +           S++ + +I       +     +         
Sbjct: 232 LDIVLKECNRCSEIVHNLLSFGHRDVRAMSIVNINNIILNCLKLLHPRLSILPSGIIKLA 291

Query: 103 --SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                   +    E  ++ LNL + A   +   G + IS +      +  +   G     
Sbjct: 292 LSEEEPCVMGHPGELMQVALNLILNALYEVRDIGTIDISTRVKGRMVLLRVSDTG-GGFA 350

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   ++ +    +        I       +  ++   +          V   +L 
Sbjct: 351 PEDVDKLFEPFFTTKPAGQGIGIGLSTCYNIIMKHGGEITASSEPGEGAVFEVILP 406


>gi|320107337|ref|YP_004182927.1| integral membrane sensor signal transduction histidine kinase
           [Terriglobus saanensis SP1PR4]
 gi|319925858|gb|ADV82933.1| integral membrane sensor signal transduction histidine kinase
           [Terriglobus saanensis SP1PR4]
          Length = 387

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 65/228 (28%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
           + +NI     +  L     L + + H+I +P+ +I  +  +L         + E + ++ 
Sbjct: 146 LHQNIERLKKTERLTAAGQLSASLAHEIRNPLASISGAAGILTRGQASPESQAECLDILT 205

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKI 109
             S      L                    ++                  ++V  + +  
Sbjct: 206 KESQRLNKLLTNFLTFARPRLPRFQATLPSEMIYSVAALAQHVAGEKGVALEVETSSDAR 265

Query: 110 DLSRERAKILLNLFMV---AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           ++  +  +I   L  +   A  + P  G V I            +   G+     E+  +
Sbjct: 266 EIDCDPEQIKQLLLNLLLNAIQATPNEGTVLIRTHFIVKALQVEVCDEGSGIAPEER-DR 324

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +  +   +       +A ++   L          +    L 
Sbjct: 325 IFEPFFTTKENGTGLGLAIAANIASQHGGTLTCRANIGGGAIFRMELP 372


>gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 971

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50
           +         +  L A  LL S   H++ +P+  + N++  L         +      ++
Sbjct: 711 LRDAAVRAAENERLAATGLLTSGFAHEVRNPLNGLMNAMLPLRESILGSQVDPDTTRAML 770

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTG---SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            ++           + +      +     V+    L     V+   I  D  V   +  +
Sbjct: 771 DVMEECGTRIRHLAESLLSFVRTSDRLVPVNLGASLDSTLSVLAWKIPPDVLVVRDYQCD 830

Query: 108 KIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++ +NL   A  ++   G++ IS +      + S+   G     PE   
Sbjct: 831 VPITGDPGSLNQVWVNLIDNALRAVGDKGQLRISTEHDGATAVVSITDTGTGI-KPEDME 889

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++      +    +   +       +   +   +               L 
Sbjct: 890 RLFQPFFSTRAAGEGTGLGLALCRRIVLRHGGLIQLTSEWGKGTRCEVRLP 940



 Score = 86.8 bits (213), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 65/251 (25%), Gaps = 40/251 (15%)

Query: 2   AKNICFNLSSMDLVALLCS-------------RICHDIISPIG----------------- 31
           A+      ++  L A L +              + H++ +P+                  
Sbjct: 293 ARTQELVEANSKLAAALDTQKELIRLKSEFFDNVSHELRTPLTLILLSLESLLQRDPSAY 352

Query: 32  --AIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV 89
             ++   L  ++       +++LI      A +    +RL +        L  L    +V
Sbjct: 353 PDSVRQHLATMERSA--HRLLKLINNLLDLAQMEAGKLRLRYQAVELHSLLTSLLSPFRV 410

Query: 90  IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           + +   +   +     G           +  NL   A     +G  V + V +  +    
Sbjct: 411 MAEKKGLTLTLVGQAVGPIHGDVERIEVVFQNLVSNALKFTQQGS-VQVRVSEDSSSVFV 469

Query: 150 SLKINGNLARFPE---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
            ++  G      +    F +    +           I    V      +   +    +  
Sbjct: 470 EVEDTGPGIAPQDIDVIFDRFAQADSTGTRRFGGTGIGLALVKETVDLHSGSIRVSSVVG 529

Query: 205 HNVVLSALLEK 215
                   L K
Sbjct: 530 KGATFRVQLPK 540


>gi|163743303|ref|ZP_02150684.1| phosphate regulon sensor histidine kinase, putative [Phaeobacter
           gallaeciensis 2.10]
 gi|161383491|gb|EDQ07879.1| phosphate regulon sensor histidine kinase, putative [Phaeobacter
           gallaeciensis 2.10]
          Length = 346

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 17/239 (7%), Positives = 63/239 (26%), Gaps = 27/239 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           +I     +  +     + + H++ +P+ A+   +E L      +    D  + +++  + 
Sbjct: 108 DITDREQASQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDAPARDRFLTIMQGEAN 167

Query: 59  SAIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +                           ++ +     A + ++ +    E  
Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPREQLDLGAHLASTLKSLEPVAEAAEVQLILEIPEEPT 227

Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161
            ++ +  ++      +   ++  G                         +  NG      
Sbjct: 228 LVTGDPDQLQQVFTNLVENAIKYGGDQVTLRLRTRDRDPAVRAAAVRVEVIDNGAGIDPV 287

Query: 162 EKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +      +         +    V  + + ++ R+  E       V + +L +
Sbjct: 288 HLPRLTERFYRVDTHRSREQGGTGLGLAIVKHIINRHRGRMRVESSAATGTVFTVILPR 346


>gi|320354669|ref|YP_004196008.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123171|gb|ADW18717.1| multi-sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 608

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + KN    + +    AL  + +++ H I +PI AI  +  LL       E ++ + + + 
Sbjct: 381 LQKNKDLLVEAERYSALGHMAAQLAHSIRNPITAIGGTARLLSRKIDNKEWLRFLGMMAG 440

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----------FIAVDKRVQVSWTGE 107
            A    K +   F +   V        +  +I                    +       
Sbjct: 441 EAEKIEKTLEDLFSFVDQVKPEREKIRLIPLIHKSLLLHLAAIKAQGIKKILLLPETDPL 500

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                R   + L++L   +  ++P+GG++ I V   + +    ++ +G            
Sbjct: 501 IDADPRLIQQALVHLIRNSVEAMPQGGELFIEVVLEEAQVKILIRDSGTGGTNL---RHA 557

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D    + +    +    V  +  ++  RL  +      V  + LL +
Sbjct: 558 TDPFYTTKLVGTGMGLTLVKRIVEDHGGRLTLDNRQQGGVRATVLLPR 605


>gi|298504481|gb|ADI83204.1| sensor histidine kinase, HAMP domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 471

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 2   AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50
            +N+   L  +  L  V  L S I H+I +P+  I  +++ L         + G     +
Sbjct: 235 RENLEKRLYEAEHLSKVGQLASGIAHEIRNPLNYISLAVDHLKGEFVAACPDKGERFVPL 294

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSW 104
                  +     L    + +G    +                 + E        V    
Sbjct: 295 AEKIKEEVRRANYLVVNFMNYGRPLKLRIGEVCYRELIDRALPLLRERLDEQRIAVATEI 354

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLAR 159
             +   +  +   +   +F     A  ++P GG +T   S          +    G    
Sbjct: 355 PPDLPPMRADGEMLRNCVFNFVTNAIQAMPGGGTITLGASFDRETETFHLTFTDQGVGIP 414

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +   +I      S      +       +  E+   +L E         + +L
Sbjct: 415 PEDLP-KIFQPWFTSKEAGIGLGLAITERIIREHGGEILVESTPAQGTTFTVIL 467


>gi|229029110|ref|ZP_04185208.1| hypothetical protein bcere0028_12120 [Bacillus cereus AH1271]
 gi|228732208|gb|EEL83092.1| hypothetical protein bcere0028_12120 [Bacillus cereus AH1271]
          Length = 402

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALALITPLANLANVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKRIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|225871872|ref|YP_002753326.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196]
 gi|225793438|gb|ACO33528.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196]
          Length = 899

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 23/226 (10%)

Query: 10  SSMDLVA--LLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59
            +  L +  LL + + H++ +P+  I +  ++L            + D++ Q    +S  
Sbjct: 668 QAEKLSSIGLLAAGVAHEVNTPLAVISSYTQMLSKQVRGDDRLSPLLDKITQQTFRASEI 727

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRER--- 115
               L F R         D    + +   +    F      + +  + +   +       
Sbjct: 728 VNGLLNFSRTGTSEFRETDVNTLIRETLTLVEHQFKTAQIELVMDLSADLPTIRGNAGKL 787

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ LNLF+ A  ++  GG++ +S   +      ++   G+    PE   +I D    + 
Sbjct: 788 QQVFLNLFLNAKDAMHGGGQLRVSTLVNG-HVTIAITDTGSGI-SPENMQKIYDPFFTTK 845

Query: 176 I-------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +  E+  ++  E              
Sbjct: 846 SAPKEGQRRGTGLGLAVTYGIIQEHAGKIRVESEVGCGTTFYLEFP 891


>gi|196249913|ref|ZP_03148608.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196210427|gb|EDY05191.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 518

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ +I    E L      +    +  + +I   S      ++ +     
Sbjct: 297 FVANVSHELKTPVTSIKGFAETLLDGAMKDEEALEHFLTIILKESERLQTLVEELLDLSK 356

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------KIDLSRERAKILLN 121
               G+   ++ +     I +    F    +  Q+    E               +IL+N
Sbjct: 357 IEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGLVIRGDRNRLKQILIN 416

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A A  P  G+V +  ++ + E +  +K  G      E   +I +            
Sbjct: 417 LLANALAYTPEHGQVAVEAEEKEKEVLIHVKDTGIGIEEKEIP-RIFERFYRIDKARSRD 475

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  L   +   +          V +    K
Sbjct: 476 SGGTGLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFPK 515


>gi|39995481|ref|NP_951432.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
 gi|39982244|gb|AAR33705.1| sensor histidine kinase [Geobacter sulfurreducens PCA]
          Length = 500

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 2   AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50
            +N+   L  +  L  V  L S I H+I +P+  I  +++ L         + G     +
Sbjct: 264 RENLEKRLYEAEHLSKVGQLASGIAHEIRNPLNYISLAVDHLKGEFVAACPDKGERFVPL 323

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSW 104
                  +     L    + +G    +                 + E        V    
Sbjct: 324 AEKIKEEVRRANYLVVNFMNYGRPLKLRIGEVCYRELIDRALPLLRERLDEQRIAVATEI 383

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLAR 159
             +   +  +   +   +F     A  ++P GG +T   S          +    G    
Sbjct: 384 PPDLPPMRADGEMLRNCVFNFVTNAIQAMPGGGTITLGASFDRETETFHLTFTDQGVGIP 443

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +   +I      S      +       +  E+   +L E         + +L
Sbjct: 444 PEDLP-KIFQPWFTSKEAGIGLGLAITERIIREHGGEILVESTPAQGTTFTVIL 496


>gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 972

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++     S+    ++  + + H+I +P+  I   L+LL      DE  + +  +  S 
Sbjct: 580 LRQSKEEAESANKAKSVFLANMSHEIRTPLNGILGMLQLLKTTDPNDEQKEYLLGAIRST 639

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
               + +      +      + + + E  I+                     + R   + 
Sbjct: 640 NRLTRLLSDILDVSRIEAGRMQIVEAEFDIKMVRDSISELFDMEARGKGLLLEFRWNDNL 699

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLAR 159
               I       +IL NL   A     +G     +       DS    + ++   G    
Sbjct: 700 PLRLIGDEVRLRQILFNLVGNAIKFTEKGTIRIDACLLPRASDSSVRVLVTVGDTGIGIS 759

Query: 160 FPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          G+         +    V  L       +  +            L 
Sbjct: 760 EEHLKDIFEPFVQAEGSYTRRFQGAGLGLSIVRRLVKLLDGDISIDSTPGEGSTFYLSLP 819


>gi|94272051|ref|ZP_01292060.1| PAS [delta proteobacterium MLMS-1]
 gi|93450253|gb|EAT01526.1| PAS [delta proteobacterium MLMS-1]
          Length = 568

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLI 53
           MA+        +  + L+   I HD  + +  I    +LL      D       ++++  
Sbjct: 183 MAEARELQADKLSSLGLMAGGIAHDFNNILTPITMHAQLLSRKLPADGSAAGLDQILKAA 242

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           + +S      L F R        V   + + +  + ++  +  +  ++     E+  ++ 
Sbjct: 243 QRASALVRQILDFSRQGKHEPVQVQLGVIIKEAIKFLQAAVPANVTIRREIKSERDRVAA 302

Query: 114 ERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +  ++L  +  ++  +                              +     +  NG+  
Sbjct: 303 DPTQMLQVVMNLSLNAVQAIGDSEGVVTIELTEAEPPSGAEKSGVSHWLRLEVCDNGSGI 362

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE   Q+ D    +    +   +       +   +  ++  +            L 
Sbjct: 363 -DPEHLPQLFDPFFTTKEQGEGTGMGLPVAHGIVTRHGGQIEVQSDPGAGTCFEVYLP 419


>gi|163848714|ref|YP_001636758.1| ATPase domain-containing protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526657|ref|YP_002571128.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163670003|gb|ABY36369.1| ATP-binding region ATPase domain protein [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450536|gb|ACM54802.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 854

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGI--EDEVMQLIRLSSMS 59
           +N      +  L +   + + HD+ SP+ AI  S+E LL+        E   L+   +  
Sbjct: 603 ENEALR-QANHLKSTFLAGVSHDLRSPLTAIRASVEDLLERQHHVSPGEHRALLSNIARE 661

Query: 60  AIIRLKF------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108
                +F      +      T  +D      +            +               
Sbjct: 662 TARLSRFVDQLLDLSRIEAGTLPLDREWVEFNALVQDVVTSFHQQYPTCRVEVCVSPTLP 721

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L NL   A    P  G +T+    +  + + S+   G      E+   
Sbjct: 722 LLYIDPSLITQVLWNLLENAQKYGPSEGPITLEAFCTHTDLVLSVGDRGPGIPASERHRI 781

Query: 167 IVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +  S      +       +   ++  +  +       V    L 
Sbjct: 782 FDRFYRLERDRRSHRSGSGLGLAICHGIVTAHQGSIWVDERPGGGSVFRITLP 834


>gi|302388284|ref|YP_003824106.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302198912|gb|ADL06483.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 509

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++    +        L S I HD+ +PI AI   +E + +      E +     +  +
Sbjct: 264 LKESAEEKVEYDKENKELISNISHDLKTPITAIKGYVEGIMDGVASSPEKLDRYIRTIYN 323

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102
               +  +     +   +D+        ++       D                     V
Sbjct: 324 KANDMDKLIDELTFYSKIDTNKIPYTFSKINVAGYFRDCVDEVGLEMEDRSIELGYFNYV 383

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I  + +  +++ N+   +   + +    + I ++D  +     ++ NG      
Sbjct: 384 DEDVVVIADAEQLRRVINNIVSNSVKYMDKRNGIINIRIKDVGDFIQVEIEDNGKGIPAK 443

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  R+     +     +  +L K
Sbjct: 444 DLPNIFDRFYRTDSSRNSSQGGSGIGLSIVKKIIEDHGGRIWATSKEGIGTEIHFVLRK 502


>gi|295705395|ref|YP_003598470.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294803054|gb|ADF40120.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 378

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 74/223 (33%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61
           +     L  + LV  L + + H+I +P+ ++   ++ L +E    +   +++        
Sbjct: 154 EEKILQLDKLALVGQLAAGLAHEIRNPMQSVRGFIQFLFNENEQAEPFQKIVLDELDRMN 213

Query: 62  IRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSR 113
             +    L    T         V+ +       +       V+  V++            
Sbjct: 214 ELINNFLLVTQPTAPKKEIVSIVEVIHDTVAFLKSEAALYNVEMNVRIEGAIPLVSIDPA 273

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +  ++ +NL   A  ++ +  +  ++  +++ ++  +  ++  G+               
Sbjct: 274 QMRQVFMNLLKNAIEAMEKKKRGEVNLIIKEWEDWALIDIQDTGSGIPLSIINKVGNPFF 333

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       + +E+  +L  E  ++   V++  L 
Sbjct: 334 STKDGTGMGLGLSICKTIINEHNGKLAIESDEN-GTVVTVKLP 375


>gi|289433267|ref|YP_003463140.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT]
 gi|288946987|gb|ADC74684.1| multi-sensor hybrid histidine kinase [Dehalococcoides sp. GT]
          Length = 852

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 70/234 (29%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +N      +     L A+  + + I H+I +P+  +    ELL    D        +Q+I
Sbjct: 472 ENQRLRDKAEMASRLAAIGEMAAGIAHEINNPLTGVIGFSELLAAREDLPEDIMADLQVI 531

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWT 105
              S   +  ++ +         V + + +             V +       R      
Sbjct: 532 NHGSQRVVEIVRRLLTFARQNKPVKTRLNVHELIDNTLEFRSYVFKTANIEVIRKYDQNL 591

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
                   +  ++ LNL + A  ++ +       TI+     +     +  +G     PE
Sbjct: 592 PWITADPGQLQQVFLNLVINAEQAMRKAHDGGKLTITTTREDSFFSICIADDGPGM-TPE 650

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I      +    D   +     + +  ++   +  E     +   +  L 
Sbjct: 651 VKAKIFQPFFTTKGPKDGTGLGLSLAMAIILDHHGTIGVESEYGRDTAFTINLP 704


>gi|254513019|ref|ZP_05125085.1| histidine kinase [Rhodobacteraceae bacterium KLH11]
 gi|221533018|gb|EEE36013.1| histidine kinase [Rhodobacteraceae bacterium KLH11]
          Length = 747

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +AK       +  + AL  L + + H++ +P+  +     +L E     ++   I   S 
Sbjct: 367 LAKQRELLFQNEKMSALGELLAGVAHELNNPLSVVVGHSLMLKEEITNPDLTVRIEKISN 426

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
           +A    K ++          S I   D+  VIE    V      S               
Sbjct: 427 AAERCAKIVKTFLAMARQQPSKIEQVDVASVIETAADVVGYGNTSGDVRVTQNIPAGLSP 486

Query: 114 ------ERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPE 162
                 +  ++++NL + A  ++   G   +       Q        ++K NG       
Sbjct: 487 IAADADQITQVIINLIINAEQAMTSSGCGNLIELSASAQPDTGMIEVTVKDNGPGI-PKA 545

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +    +    +   I   +   +   +  ++  +   +    +   L 
Sbjct: 546 IRARIFEPFFTTKEVGEGTGIGLAFCHRIILSHGGQIRLDQGGEGGTCIRITLP 599


>gi|222097101|ref|YP_002531158.1| sporulation kinase a [Bacillus cereus Q1]
 gi|221241159|gb|ACM13869.1| sporulation kinase A [Bacillus cereus Q1]
          Length = 510

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFIAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   V+   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTVVDIHLP 500


>gi|220903470|ref|YP_002478782.1| sensor protein ZraS [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867769|gb|ACL48104.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 521

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 65/225 (28%), Gaps = 22/225 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQLIRLSSMS 59
               L A+  L + + H+I +P+ +I            E  ++    + ++  +   +  
Sbjct: 281 RKEKLAAVGNLAAGVAHEIRNPLSSIKGYATYFGQRFPEGSEDRAAANVMVSEVDRLNRV 340

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRER 115
            +  +   R +            +  + ++I           +          +      
Sbjct: 341 IMDLIGLSRPSDVCPRPGRLADVVEHVMRLIRQDAEKRGVEVECRVAPGVPLAMVDPERM 400

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            + LLNL + A  ++P GG++T +V   K      ++  G      +    + D    + 
Sbjct: 401 GQALLNLCLNALDAMPEGGRLTFAVTWHKKGVCLMVRDTGVGIVPRQLP-HVFDPYFTTK 459

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEII------DDHNVVLSALLE 214
                +    V  +   +   +                +    L 
Sbjct: 460 GQGTGLGLAMVHKIVEAHNGEISVTSRQAQSGAAGE-TIFRIWLP 503


>gi|254423237|ref|ZP_05036955.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190726|gb|EDX85690.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 378

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 56/220 (25%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMR------- 68
           L   + H++ +P+  +   LE L +       E    +   +      +  ++       
Sbjct: 154 LVGDLTHELRTPLTIVKGYLEGLADGAISPTPETYDRLANETERLRRLVNDLQELSKLES 213

Query: 69  -LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERAKILLNL 122
                +  +V+ +  +  +     D +    +++++                  +IL+NL
Sbjct: 214 GYLPIHPQAVNIVPLVTQVCDRFADQLINSDQLKLTTEFSPDLLPVWGDPARIEQILVNL 273

Query: 123 FMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST- 175
              A           +V     +       ++   G   +  +    F +    +     
Sbjct: 274 LSNALRHTKAGEVNVRVYTQATNDAKLVWIAVSDTGEGIKKTDIPRVFERFWRADRSRDR 333

Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 I       L       +            +  L 
Sbjct: 334 ISGGSGIGLAICRRLVELQGGTITATSEIGVGSTFTFSLP 373


>gi|330973714|gb|EGH73780.1| sensory box histidine kinase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 982

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 743 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 803 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 863 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 921

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 922 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 973


>gi|307822100|ref|ZP_07652332.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307736666|gb|EFO07511.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 507

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 65/223 (29%), Gaps = 23/223 (10%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM--------QLIRLSSMSAI 61
           L+  + S I H++  P+ AI    +    L++    +   +             +     
Sbjct: 284 LMGEMASGIAHELNQPLTAISTYTQTSINLINTDHPDPVKLLEILSKIHHQASRAGQIIQ 343

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              +F++    +  + D    + +   +   +      ++++        ++ ++ +I  
Sbjct: 344 RMREFIKSHAKHRSTADINSLIHECVDLCIVELNQNGVKLKLELENNLPSINVDQIQIEQ 403

Query: 121 NLFM---VAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLARFPEKFTQIVDGN 171
            L      +  +L    +         +           +K NG      ++  +I    
Sbjct: 404 VLINLIRNSVDALKNLPEKRQRQITIHSRVTLNNSIQVRVKDNGPGIN-EDQQKKISTPF 462

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  D   +       L   ++  L  +   D       +L 
Sbjct: 463 YTTKADGMGMGISISRSLIEAHEGTLYFKSKPDKGTTFYFILP 505


>gi|301308442|ref|ZP_07214396.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833912|gb|EFK64528.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 287

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 20/228 (8%), Positives = 66/228 (28%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  L +   + + H+I +P+ AI    ++L +    +  ++   +   + 
Sbjct: 53  LERAKEKAEEADRLKSAFLANMNHEIRTPLNAIVGFSQVLVDEEDRETRLEFSNIIQSNN 112

Query: 61  IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--E 107
            +  +                      +D  + + +I  +I   +     ++++      
Sbjct: 113 ELLQRLIGDVLDLSKIESNSMPLIYKELDIGLLMKEIYSMILLRMPSGIELRLNDCEALV 172

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +IL NL   +     + G +    + +     F ++ +G      +  +  
Sbjct: 173 MEADKNRLTQILTNLLTNSIKHTEK-GFIRFGYKRTAASVEFFVEDSGEGIPRDKIDSIF 231

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +S      +       L  +   ++          +    L 
Sbjct: 232 SRFVQLDSWSKGVGLGLAICRGLVEQMGGKIWVTSELGKGSIFYVTLP 279


>gi|297570096|ref|YP_003691440.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926011|gb|ADH86821.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 909

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 72/244 (29%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            K     L     + A+  L + I HD  + +  I +  EL+                ++
Sbjct: 525 QKEFEAKLQQTKKMEAVGTLAAGIAHDFNNILTGILSYSELILRGNTSDPALRDDISRIL 584

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +L R  +      L F R        +     + ++ + +   I  D  V  + + +  +
Sbjct: 585 ELGRRGAGLTRQLLAFSREQEARMQPLKLNELVENLMKTLGRLIGEDIEVTFNLSPDLGN 644

Query: 111 LSRER---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152
           ++ +     +++LNL + A  ++P                               + ++ 
Sbjct: 645 VNGDPGQLEQVILNLVVNARDAMPTGGTIVITTGNVELDAEQAARHPGMTPGPHVMLTVS 704

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+    PE    I +    +        +    V  +  +++  +          V  
Sbjct: 705 DTGSGM-DPETQEHIFEPFFTTKEVGAGTGLGLATVYGIIQQHQGSIWVYSEIGGGTVFK 763

Query: 211 ALLE 214
             L 
Sbjct: 764 IFLP 767


>gi|156054917|ref|XP_001593383.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980]
 gi|154704085|gb|EDO03824.1| hypothetical protein SS1G_06305 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 1464

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 66/250 (26%), Gaps = 37/250 (14%)

Query: 1   MAKNICFNL--------SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           M +     L         +  L +   + + H+I +PI  +    ELL ++ +++E  + 
Sbjct: 711 MQERENTRLLANEAAAKEASRLKSQFLANMSHEIRTPIAGVIGMAELLTDMNLDEEQQEC 770

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSV------------------DSLIGLGDIEQVIEDFI 94
                 SA   L  +     ++                     D    LG   +      
Sbjct: 771 AENIQRSANALLTVINDILDFSKVESGRLDIEEVQFSLSVVVRDVSKMLGFAAERKNLMF 830

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFS 150
             D  V V      +       +I+ NL   +      G      +++ ++    E  F 
Sbjct: 831 DSDITVGVDKDLIVMGDPGRVRQIITNLLTNSIKFTSEGRVKFSVIKEREDADTIEVKFV 890

Query: 151 LKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++  G      E   ++                   +       L      R+  E    
Sbjct: 891 VEDTGIGI-EEEVRKRLFKPFSQADSSTARRFGGTGLGLTISKNLVDLMHGRITLESSLG 949

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 950 QGTTATFWIP 959


>gi|317122483|ref|YP_004102486.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
 gi|315592463|gb|ADU51759.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           marianensis DSM 12885]
          Length = 550

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 58/224 (25%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             + + H++ +P+ AI    E L      ++    +   Q+I   +      ++ +    
Sbjct: 303 FVANVSHELRTPVAAIQGFAETLLEGVIREDPATAEHFAQVIHREAERMARLVQDLLDLA 362

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKIL 119
                   L       +      A   R ++                          ++ 
Sbjct: 363 RLESPEPGLQRERFDLRDSAAQAAERFRPRLEAAGLRLEVESPPEPVPVWADRHRLDQVW 422

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF---PEKFTQIVD--G 170
            NL   A    P GG VT++V+          +  ++  G        P  F +      
Sbjct: 423 TNLLENARQYTPAGGTVTVAVRRDGTGRKARAVGEVRDTGRGIPPDALPRIFERFYRVDP 482

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V  +   +   +  E       V+   + 
Sbjct: 483 GRSRASGGTGLGLAIVKHIIEAHGGAVEAESELGAGTVIRFRIP 526


>gi|299136801|ref|ZP_07029984.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
 gi|298601316|gb|EFI57471.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
          Length = 1013

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 75/241 (31%), Gaps = 31/241 (12%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL------------DEVGIE 46
           M K +     S  L +  LL + + H++ +P+  I +  ++L                + 
Sbjct: 752 MEKQLT---QSEKLSSIGLLAAGVAHEVNTPLAVISSYTQMLGKQLRGDEANHARLQPVL 808

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWT 105
           +++ Q    +S      L F R+       VD   +       +     +    V++   
Sbjct: 809 EKITQQTFRASEIVNGLLNFARMGTVDFARVDVNAMLRDTALLLEHQLRSGRVAVEMHLD 868

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARF 160
            +   +S       ++ +N+ M A  +L   G  ++ IS   + +      + +G     
Sbjct: 869 PQLPAISGNLGKLQQVAVNMMMNAKDALQDKGSGRIKISTSRTSDSVEILFEDDGPGM-P 927

Query: 161 PEKFTQIVDGNVESTID-------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           PE   +I D    +  +          +       +  E+   +              L 
Sbjct: 928 PEVLRKIYDPFFTTKSNPKEGQRKGTGLGLAVTYGIVQEHGGTIEASSTVGEGTAFRLLF 987

Query: 214 E 214
            
Sbjct: 988 P 988


>gi|224370871|ref|YP_002605035.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
 gi|223693588|gb|ACN16871.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
          Length = 597

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 72/234 (30%), Gaps = 25/234 (10%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----------VGIEDEVMQ 51
               + +  L ++  L + + H+I +P+  I +++ ++ +            G   + ++
Sbjct: 346 QTQLIHASKLASVGELATGVAHEINNPLAIITSTVGVVRDMLNPEFNLDSSPGAIVKELK 405

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I  ++  A    + +            +  + +I + +   +   +        E    
Sbjct: 406 TIESAAFRASRITRQLLDFGRKNEPKKEMHNINNILETVRHGLTKHRFDLADIKIETNYA 465

Query: 112 SR---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                      + +++ LNL   A  ++   G +TIS           ++  G       
Sbjct: 466 QNLPDIKIDADQISQVFLNLLNNAEDAIKDKGTITISTDFDNEFVRVMIQDTGEGMPLER 525

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +        +     + + +  K  +  + +     + +  L 
Sbjct: 526 IKE-IFNPFYTTKEAGKGTGLGLSISLGIINAMKGTIEVQSLPGKGSLFTISLP 578


>gi|297582942|ref|YP_003698722.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141399|gb|ADH98156.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 807

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++I        L   L S + H++ +P+ +I    E +             ++ I   S 
Sbjct: 573 RDITREAEVDRLKTELVSTVNHELRTPLSSIMGFTERMLNKDVSEERRRVYLETILSESE 632

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIG---------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +             D +              +           K +      +  
Sbjct: 633 RLSQLVNNFLDLQKIESLPDEMDLEPVKISDSLRQAMSAFHPSEHHELKVIDSLTDTKVN 692

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQI 167
             S    ++ LNL   A    P GG +T+  +        +  +   G      +   ++
Sbjct: 693 GHSASLHQVFLNLLSNAQKYSPEGGTITVETELDDAKKNVLIHISDEGIGIAKKD-HDRL 751

Query: 168 VDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         I    +       L       +            + ++ 
Sbjct: 752 FMKFSRIKDQHGGTIKGTGLGLALSKELMEAQGGDIRVRSEAGEGSTFTVVIP 804


>gi|157364230|ref|YP_001470997.1| histidine kinase [Thermotoga lettingae TMO]
 gi|157314834|gb|ABV33933.1| histidine kinase [Thermotoga lettingae TMO]
          Length = 488

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 59/238 (24%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
            K +    ++  L     + + H++ +P+ AI    E +       +       +Q++  
Sbjct: 248 TKELEKLRAADRLKTDFIATVSHELRTPLTAIKAYTETILADPESMDKDTLTGFLQIVYK 307

Query: 56  SSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     L  +                     + ++ +            V  +   S 
Sbjct: 308 ESLHLESLLDELLDFAKLEQKAMVLEKSKFDLTELIMQVIQSMSEFARSKKVKLQCVKSK 367

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFP 161
               +   +   ++L+NL                     +  ++  I S+  NG      
Sbjct: 368 PIYIVADQKRIRQVLINLISNGIKYSKEEASEKYVKLSAETHQDSVIISVADNGIGIEKQ 427

Query: 162 EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +                  +   +       +   +  ++  E       V    + 
Sbjct: 428 HQNKIFEKFFRADSVFDYRTEGTGLGLAISKEIVELHGGQIWFESKPHEGTVFYVKIP 485


>gi|86138705|ref|ZP_01057278.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           MED193]
 gi|85824765|gb|EAQ44967.1| sensory box histidine kinase/response regulator [Roseobacter sp.
           MED193]
          Length = 866

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L+     A L + + H++ +P+  I  +++LL E     E  + +   S+S 
Sbjct: 375 LRRARDDALAGERAKANLLTVMSHEMRTPLTGILGAIDLLQETDPNAEQSRYLDAMSVSG 434

Query: 61  IIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------S 103
            + L  +                     D    +  +    +        V         
Sbjct: 435 ELLLHHVNDVLQLSSLESGIASEAACPFDLREVMERLVGSQQAHARSHGNVLTLNYGLDE 494

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE 162
                    R   + LLNL   A      G  +       +     F +   G      +
Sbjct: 495 AASMVAGQPRALQQALLNLIGNAIKFTRDGAVLVDVQLSATAGHIEFHVSDTGEGIAKKD 554

Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +  +          +   +       +       +  +       + S  L 
Sbjct: 555 LK-RIFEDFITLDSSYRRGSEGTGLGLAITRRIVEAIGGTITCDSELGEGSLFSLTLP 611


>gi|75759340|ref|ZP_00739437.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218896372|ref|YP_002444783.1| sporulation kinase B [Bacillus cereus G9842]
 gi|228900020|ref|ZP_04064256.1| hypothetical protein bthur0014_12290 [Bacillus thuringiensis IBL
           4222]
 gi|74493172|gb|EAO56291.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|218542679|gb|ACK95073.1| sporulation kinase B [Bacillus cereus G9842]
 gi|228859634|gb|EEN04058.1| hypothetical protein bthur0014_12290 [Bacillus thuringiensis IBL
           4222]
          Length = 402

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGIGM-DSEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|228973644|ref|ZP_04134226.1| hypothetical protein bthur0003_34000 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980200|ref|ZP_04140514.1| hypothetical protein bthur0002_33710 [Bacillus thuringiensis Bt407]
 gi|228779558|gb|EEM27811.1| hypothetical protein bthur0002_33710 [Bacillus thuringiensis Bt407]
 gi|228786105|gb|EEM34102.1| hypothetical protein bthur0003_34000 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
          Length = 478

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 243 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 302

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 303 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 362

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 363 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIMDEGCGI-PEDRISRL 421

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  RL      +   ++   L 
Sbjct: 422 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 468


>gi|229134251|ref|ZP_04263066.1| hypothetical protein bcere0014_31630 [Bacillus cereus BDRD-ST196]
 gi|228649181|gb|EEL05201.1| hypothetical protein bcere0014_31630 [Bacillus cereus BDRD-ST196]
          Length = 429

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +     +     + + H++ SP+ +I     +L +           + +
Sbjct: 187 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105
           I   +         +            L  +            V        + +     
Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 306

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + + ++ +     ++  N+   +       G + +S++         +   G      +
Sbjct: 307 LQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDD 366

Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  D   +    V  +   ++  +  +            L 
Sbjct: 367 QKRIFDRFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSEPGQGTTFIVTLP 423


>gi|226225795|ref|YP_002759901.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
 gi|226088986|dbj|BAH37431.1| putative two-component histidine kinase [Gemmatimonas aurantiaca
           T-27]
          Length = 423

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 55/226 (24%), Gaps = 30/226 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA---IIRLKFMRLAFGYT 74
           L + + H++ +P+ A+    ELL++  +     +   + +            +     Y 
Sbjct: 196 LLATLSHELRTPLTALEGYGELLEDEILGPLSHEQRDVITRLRTVGRHLGSLIEDILTYA 255

Query: 75  GSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKIL 119
                 +                   +            +   G    +  +     +IL
Sbjct: 256 SLEADRLTARPSAVRLDELLDSLHPFLEPLAREKGIDFVIDPEGGLPGMHTDEAKVRQIL 315

Query: 120 LNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--- 171
           LNL   A                  + D      F++K  G      +   ++       
Sbjct: 316 LNLCQNAIKFTESGSVTLRVSRGSPMPDGGVSLRFAVKDTGIGIATADL-QRLFRPFSQL 374

Query: 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +  Y    LA     R+          V + +L 
Sbjct: 375 EDVPTRRRGGTGLGLYIARRLATLLGGRIEVVSRPGEGSVFTLVLP 420


>gi|154244584|ref|YP_001415542.1| PAS/PAC sensor hybrid histidine kinase [Xanthobacter autotrophicus
           Py2]
 gi|154158669|gb|ABS65885.1| PAS/PAC sensor hybrid histidine kinase [Xanthobacter autotrophicus
           Py2]
          Length = 695

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 66/245 (26%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---------------G 44
            +          L AL  L + + H++ +P+  +     LL E                 
Sbjct: 285 KRQRNALHQKEKLAALGSLLAGVAHELNNPLSVVTGQTMLLREQVLKEANVRSGGLPTLD 344

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKR 99
              +    I  ++      ++          +      L D+ +     +  +  A   +
Sbjct: 345 KVIQRCDRIETATHRCARIVRSFLDMARQREAERRSTNLADVAREAVELLGYNMRASGVK 404

Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSL 151
           V +        L  +     ++LLNL + A  +L              V   +N  +  +
Sbjct: 405 VSLDIAPGLPRLMLDAGQIHQVLLNLLVNAQQALEEKAGERRVAVSVAVDADRNAVLIRV 464

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             NG         ++I D    +        I       L   +   L      D   + 
Sbjct: 465 ADNGPGIAEN-IRSRIFDPFFTTKPQGVGTGIGLAVSRGLIEAHGGTLELGTGPDGGALF 523

Query: 210 SALLE 214
           +  L 
Sbjct: 524 TIQLP 528


>gi|163941058|ref|YP_001645942.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163863255|gb|ABY44314.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 455

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +     +     + + H++ SP+ +I     +L +           + +
Sbjct: 213 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 272

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105
           I   +         +            L  +            V        + +     
Sbjct: 273 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 332

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + + ++ +     ++  N+   +       G + +S++         +   G      +
Sbjct: 333 LQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDD 392

Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  D   +    V  +   ++  +  +            L 
Sbjct: 393 QKRIFDRFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSEPGQGTTFIVTLP 449


>gi|329765160|ref|ZP_08256742.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138363|gb|EGG42617.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 358

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 11/219 (5%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
                    +L+  L SRI HDI +P+  I  ++E L         + + M  I  S   
Sbjct: 141 ETQVMRERFELIGELSSRIAHDIRNPLSVIRAAVENLKILYSIDDAKLKNMDKIDRSIDR 200

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
              +++ +         +     L +I     D I +  +V+       I++  ++ +I 
Sbjct: 201 ITHQIEDVLDFVRSDTMMFEKYALSEILADALDSIHIPNKVRFELPKNDIEIMCDKKRIS 260

Query: 120 LNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           + +         ++   G + I   D+K   I  ++ +G+         +I +    +  
Sbjct: 261 VVMVNIILNGIQAINENGNIKIRFNDAKKFAIIEIEDSGSGI-PNHIIDKIFEPMFTTKQ 319

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  + + +  ++  +       V S  + K
Sbjct: 320 HGTGLGLSSVKTIINAHAGKISVKCNP---TVFSITIPK 355


>gi|295702530|ref|YP_003595605.1| sporulation kinase KinC [Bacillus megaterium DSM 319]
 gi|294800189|gb|ADF37255.1| sporulation kinase KinC [Bacillus megaterium DSM 319]
          Length = 435

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 69/225 (30%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            ++    ++S  +  +  +   + H+I +P+ ++   ++++       D  + ++     
Sbjct: 203 RQDEELMITSEKMSVIGQMAGAVAHEIRNPLTSLKGFVQVMQASKETNDTYLDIMMSEID 262

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGEKI 109
              +    M +             L +I + +   +     +                  
Sbjct: 263 RINLISSEMLILGKKQHVSFEKTNLCEILKQVVTLMEAQANLNNVSILLKETAKRPIYVS 322

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S +  ++ +N+      ++   G +TI+V++     +   + NG      E+  Q+  
Sbjct: 323 ADSNQLKQVFINVIKNGVEAIMEKGHITITVEEKDTRALIHFEDNGIGM-SQERIEQVGT 381

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   ++  +  +        +   + 
Sbjct: 382 PFYSTKEAGTGLGLAVCYKIMERHQGTMHFKSGKGKGTTVIIDMP 426


>gi|256839468|ref|ZP_05544977.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256738398|gb|EEU51723.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 846

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 64/233 (27%), Gaps = 22/233 (9%)

Query: 2   AKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +     L     +  L +   + + H+I +P+ AI     ++ E+  E E    + +  
Sbjct: 473 QREKEIELIKVKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAEIDDEVERQSYLDIIH 532

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104
            +  + L+                  +   VD     G+I       +  D  +      
Sbjct: 533 KNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSDVVLIFDLGS 592

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +       R   +++ N    A     +G        +  +     +K  G      E 
Sbjct: 593 PSVIVKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE-GDFIRVCVKDTGIGI-SAEN 650

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +  +  ++      +       +      ++  +  +         L 
Sbjct: 651 QRRIFERFIKVDTFQQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLP 703


>gi|322421777|ref|YP_004201000.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128164|gb|ADW15724.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1047

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 72/242 (29%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEV--GIEDEVMQLIRLS 56
           M +        M+ V  L   + HD  + +  I    E  LL+E     + + ++ I  +
Sbjct: 664 MVEQQFLQAQKMESVGQLAGGVAHDFNNMLSVILGHAEMGLLEEQVVESQRKHLEAILDA 723

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--QVIEDFIAVDKRVQVSWTGEK-----I 109
           +  +    + +         V  +I L +     +      + + + + W   +      
Sbjct: 724 ANRSASITRQLLTFARRQNVVPMVIDLNETVSGMLKMLARLIGEEINLVWAPGQEVARVN 783

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154
               +  +++ NL + A  ++   G +TI   +                 +  + S+   
Sbjct: 784 VDPSQIDQLMANLCVNARDAIGGVGSITIRTGNVRLAGELFDPASGVAPGSYVMLSVSDT 843

Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E    I +    +        +    V  +  +N+  +  E            
Sbjct: 844 GQGM-TQEVMQHIFEPFYTTKDLGKGTGLGLATVFGIVKQNQGEIKVESEPGGGTTFRIY 902

Query: 213 LE 214
           L 
Sbjct: 903 LP 904


>gi|237654056|ref|YP_002890370.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
 gi|237625303|gb|ACR01993.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
          Length = 680

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 66/236 (27%), Gaps = 24/236 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS----LELLDEVGI---------E 46
            +       S  L+ +  + S + H++  P+ AI +     +  L +             
Sbjct: 440 RQQEERLQQSSRLITMGEMASTLAHELNQPLAAIASYTTGCINRLQDEAPLDRSELLDVH 499

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWT 105
             + +  + +         F+R +     ++D    + D   +IE D      R++    
Sbjct: 500 QRIARQAQRAGEIIRRVHDFVRRSEPKREALDLAAVIRDAIGLIEADARKRGMRIRSELA 559

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFSLKINGNLA 158
                +  +   I   +  +   ++                          ++   G   
Sbjct: 560 DGLPQVPADAVMIEQIVVNLVRNAMDSMRDTPPAERVVAVHTAREGRFVTVTVADRGAGI 619

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   ++ +    +  +   +       +A  ++ RL  E       + +  L 
Sbjct: 620 -PAETAARLFEPFFTTKQEGMGMGLNICRSIAELHRGRLAFESRPGGGTIFTLSLP 674


>gi|150008248|ref|YP_001302991.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|255015397|ref|ZP_05287523.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
 gi|298375176|ref|ZP_06985133.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|149936672|gb|ABR43369.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
 gi|298267676|gb|EFI09332.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 846

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 64/233 (27%), Gaps = 22/233 (9%)

Query: 2   AKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +     L     +  L +   + + H+I +P+ AI     ++ E+  E E    + +  
Sbjct: 473 QREKEIELIKVKEADKLKSAFLANMSHEIRTPLNAIVGFSNIIAEIDDEVERQSYLDIIH 532

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104
            +  + L+                  +   VD     G+I       +  D  +      
Sbjct: 533 KNNDLLLQLIDDILDFSKIEAGTMDYHFEEVDIKDICGEIALADSIKMPSDVVLIFDLGS 592

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +       R   +++ N    A     +G        +  +     +K  G      E 
Sbjct: 593 PSVIVKTDERRVMQVISNFVNNAIKFTTKGSITIYYEIE-GDFIRVCVKDTGIGI-SAEN 650

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +  +  ++      +       +      ++  +  +         L 
Sbjct: 651 QRRIFERFIKVDTFQQGTGLGLTISRTIIEALGGKIGVDSEEGVGSTFWFTLP 703


>gi|83749310|ref|ZP_00946308.1| Sensor protein kdpD [Ralstonia solanacearum UW551]
 gi|83724041|gb|EAP71221.1| Sensor protein kdpD [Ralstonia solanacearum UW551]
          Length = 957

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55
           A++    + S  L   L + + HD+ +P+  +    E L         +Q      +   
Sbjct: 711 AQDALVRIESERLRNSLLAAVSHDLRTPLTGLVGMAETLLRTPPPLSPLQAEAAEAIGEQ 770

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDL 111
           +    ++    + +A      +   +    IE+++    +        V V    +    
Sbjct: 771 ARRMRVMVTNLLDMARLQNHDIKLRLEWQSIEELVGAALKGTPLPAHTVVVDDLADLPLQ 830

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGNLARFPE- 162
             +   +   L  +   +       T               +E    ++ +G        
Sbjct: 831 RCDGPLMERVLSNLLENAGKFAPAGTEVRLSAGVVHDTVRGDEMHVRVRDHGPGVPAGAE 890

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G+ ES      +       +   +  R+  E   D        L 
Sbjct: 891 RVIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPADGGACFVVALP 944


>gi|307308357|ref|ZP_07588062.1| histidine kinase [Sinorhizobium meliloti BL225C]
 gi|307321170|ref|ZP_07600573.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306893161|gb|EFN23944.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306901158|gb|EFN31765.1| histidine kinase [Sinorhizobium meliloti BL225C]
          Length = 639

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 62/222 (27%), Gaps = 23/222 (10%)

Query: 15  VALLCSRICHDIISPIGAIHNSLE----LLDEV------------GIEDEVMQLIRLSSM 58
              L + I H++  P+GAI ++ E    +L                I+D+  +   + S 
Sbjct: 414 AGALSASIAHELNQPLGAIRSNAEAAAVILRSERPDLELIGQILVDIQDDDQRAHDVISR 473

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
              +  K   + +      D       I +   E    V    Q S             +
Sbjct: 474 IRGLLKKRSEIDWQEFDLNDVTTSAIRILRGEAERRSVVVSSSQTSRELPVRADRVHVQQ 533

Query: 118 ILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           ++LNL   A  ++                 ++++   S+   G      E+   + +   
Sbjct: 534 VILNLATNAMDAMLEVITTEKRLLLETRLTAESKVELSISDTGRGI-PDERLASVFEPFY 592

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +      ++          V   +L 
Sbjct: 593 TTKPTGTGLGLSIARAIVETYGGKISAANRPGGGAVFRVVLP 634


>gi|254826317|ref|ZP_05231318.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194]
 gi|293595558|gb|EFG03319.1| sensor histidine kinase [Listeria monocytogenes FSL J1-194]
          Length = 459

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA  +     S        + + H++ SP+ ++     LL    + ++            
Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             RL  +        S+D    L   E V  D           W+  + +L+        
Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   A    P+GG + + + +        ++ +G      E   +
Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D              S  +       +   +   +  +   +     +  L K
Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFTVKLPK 458


>gi|187922203|ref|YP_001893845.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
 gi|187713397|gb|ACD14621.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia phytofirmans
           PsJN]
          Length = 657

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 67/235 (28%), Gaps = 30/235 (12%)

Query: 10  SSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57
            ++ L            +   S + H++ +P+ AI    ++L+ + G+  + +  I    
Sbjct: 262 QALKLAKAEAERACHAKSEFLSSMSHELRTPLNAILGFAQILEMDDGLSTDQLDSIAEIL 321

Query: 58  MSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVS 103
            +                           +VD    + D  Q+++      +    +++ 
Sbjct: 322 KAGHHLLGLINEVLDLASIESGKTTLSLETVDVSTLIRDCAQLVQPLATSREIDLHLEIP 381

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   ++   +I+LNL           G+V + V+   +    ++   G        
Sbjct: 382 ERAAACADNQRLKQIVLNLLSNGIKYNHPSGEVRVIVEPDGSRLRIAVADTGAGICAERL 441

Query: 164 FTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     G   ++++   I       L      R+  E            L 
Sbjct: 442 GELFQPFSRLGADHASVEGTGIGLVITRKLTEAMGGRIGVESEPGKGSRFWVELP 496


>gi|118581023|ref|YP_902273.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503733|gb|ABL00216.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 1134

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 62/233 (26%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           ++       ++ + LL   I HD  + +  I  ++ L    LD        ++    +++
Sbjct: 756 QDERVRSQKLESLGLLAGGIAHDFNNILSGILGNISLVCSRLDPDDPLASRLKSCEKATI 815

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERA 116
            A    + +         V  +I    + +    F+     V+      +    ++ +  
Sbjct: 816 RATGLTRQLLTFARGGEPVRKVIDPAPLIRESATFVLRGTNVKGDIRMTEGLSCINVDAG 875

Query: 117 KILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNLARFP 161
           +I   L  +   +                    +         +    +++  G     P
Sbjct: 876 QISQVLNNLIINATHSMPGGGVIIISAMNEALHEGNAFNLAPGDYLRITVQDQGCGI-PP 934

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I D    +      +       +   +   +            +  L 
Sbjct: 935 ENLPKIFDPYFTTKRRGSGLGLASAYAIIRRHGGAIEVSSRVGVGTTFTLRLP 987


>gi|331091984|ref|ZP_08340816.1| hypothetical protein HMPREF9477_01459 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402883|gb|EGG82450.1| hypothetical protein HMPREF9477_01459 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 497

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +  N    L        L S I HD+ +P+ AI    E + +         ++ ++ I  
Sbjct: 251 LKTNAEEKLQYDKEGKELISNISHDLKTPVTAIKGYAEGIMDGVADTPEKMEKYIRTIYN 310

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------------DKRVQV 102
            +      +  +        +               D  A                   V
Sbjct: 311 KANEMDRLINELTFYSKIDTNRIPYNFSTISVNDYFDDCAEDLSLELESKGIVFGYSNYV 370

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFP 161
               + I  + +  +++ N+   +   + +        ++D  +     L+ NG      
Sbjct: 371 EGEQKIIADAEQLKRVINNIVTNSIKYMDKEQGRINLRIKDVGDFIQVELEDNGKGISSK 430

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  E+  ++     +    V+  ++ K
Sbjct: 431 DLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSKEGTGTVMYFVIRK 489


>gi|297584325|ref|YP_003700105.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297142782|gb|ADH99539.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 425

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 70/225 (31%), Gaps = 16/225 (7%)

Query: 5   ICFNLSSM-DLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60
           I  N+     L A+  L + I H+I +P+  I   ++LLD +    ++  +  +  +   
Sbjct: 195 IEKNMQKHGKLEAVSHLSASISHEIRNPLQVIKGFIQLLDAKEYPREKQKEFYQHINDEI 254

Query: 61  IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
               K +     +               +    +  I+          K   +       
Sbjct: 255 ESAEKIINDYLMFAKPTFDYQVTISVEKEIKKAVSIIQPYAHFHSVTVKEPILVGDHIIR 314

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++++N+      ++  GG++ I V   K+     +K NG      E+  ++ +
Sbjct: 315 CDEHRFKQVIINIARNCIEAMGPGGELVIDVFGGKDSVQIEIKDNGKGM-TTEQIARLGE 373

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +    V  +       +  + +     + +    
Sbjct: 374 PYFSNKTSGTGLGMMVVYSILKNIGGAIDVQSVPGEGSIFTLSFP 418


>gi|229119504|ref|ZP_04248799.1| hypothetical protein bcere0017_57320 [Bacillus cereus Rock1-3]
 gi|228663970|gb|EEL19516.1| hypothetical protein bcere0017_57320 [Bacillus cereus Rock1-3]
          Length = 811

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 67/226 (29%), Gaps = 15/226 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58
           K       S  L     L + I H+I +P+ A+   ++LL        +  + ++     
Sbjct: 583 KTEELLRKSEKLAVVGQLSTAIAHEIKNPLTAMKGFMQLLQSLGNKDTEHYIDIVLSEIE 642

Query: 59  SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKID 110
                                  D  + +  +  ++E    ++         S T   + 
Sbjct: 643 RIDSITSEFMTLAKPEALEIKTNDLNVLMKQVVMLLEPQATMNCIQIKTQFTSDTSFILC 702

Query: 111 LSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++ +N+   A  +   GG++   I     +N+        G      E+   + 
Sbjct: 703 ECNQLKQVFINILKNAIEATSMGGEILIQIEYAPDQNQVNIRFTDYGCGI-EQERIPYLG 761

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +   +       +  +++ ++  E        ++  L 
Sbjct: 762 EPFYSLKENGIGLGLMICYKIIEKHQGKIFIESEVGKGTTVNIDLP 807


>gi|302344055|ref|YP_003808584.1| GAF sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
 gi|301640668|gb|ADK85990.1| GAF sensor signal transduction histidine kinase [Desulfarculus
           baarsii DSM 2075]
          Length = 778

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           +A      L +  L AL  + + + H+I +P+ +I          L +       + ++ 
Sbjct: 538 LAHMRGRLLEADRLAALGEIAAGVAHEIRNPLVSIGGFARRVRNKLGDESPLSRYLDVVI 597

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
             +      L  M      +        LG+I       +  D      +V   +  +  
Sbjct: 598 EEATRLERTLNEMLDFSTDSRDHHDEYDLGEIMDRSVELLQRDLDEKRIKVVRDYAADLP 657

Query: 110 DLSRERAK---ILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +  +  +   + LNL++ A  ++ R      +    ++++K      +   G      +
Sbjct: 658 RVYCDERQIKHVFLNLYLNAVQAMDRGGTITLRTFTVIREAKKFVAGEVSDTGGGIPM-D 716

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +  +   +    V  +   +   +     +         L 
Sbjct: 717 VIHNIFNPFFTTKDNGSGMGLSIVHKIVTRHLGGVEVHNREGEGASFLVTLP 768


>gi|295690287|ref|YP_003593980.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432190|gb|ADG11362.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 672

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 16/240 (6%), Positives = 58/240 (24%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS 57
           A+      ++ +     A   + + H++ +P+ A+    +L++    +  E    ++  +
Sbjct: 287 AQRRRLQAAAEEAAHVKADFLANMSHELRTPLTAVLGFAQLVERQPELSAETRAYVQRVT 346

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------------- 102
            +       +     ++      + +      + +       +                 
Sbjct: 347 SAGKALRATINDILDFSKLEAGQVDIKPQPMSVAELTREAVDMFAAQAREKGVLLRLADL 406

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF 160
                          ++LLNL   A      G     +      +  +F +   G     
Sbjct: 407 SDLPLLIEADPDRLRQVLLNLIGNAVKFTEVGEIAVQARLDARADHIVFEVSDTGPGM-S 465

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++  ++     +             +       L       +  +            + 
Sbjct: 466 ADQSKRLFQRFSQVDAGAARKHGGTGLGLAICKGLVEAMGGSIGVDSRQGQGSRFWFTIP 525


>gi|228966539|ref|ZP_04127592.1| hypothetical protein bthur0004_33490 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793261|gb|EEM40811.1| hypothetical protein bthur0004_33490 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 510

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 61/227 (26%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYKHDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +       +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIYIQTKPFEDTFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|91795067|ref|YP_564718.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91717069|gb|ABE56995.1| multi-sensor hybrid histidine kinase [Shewanella denitrificans
           OS217]
          Length = 1120

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 63/243 (25%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +  +L      A L         + + H+I +P+ AI    +++    +     + +
Sbjct: 520 RKQMEQDLQKAKEAAELATEAKSAFLANMSHEIRTPMNAIIGFSDVMLTTDLVAAQRKYV 579

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVD 97
              + SA   L  +             + L                    Q  +  + ++
Sbjct: 580 TTINASANSLLHLLNDILDSAKLEKGQLQLEMQDFSLAEVIDMVTSTLSIQTRKKRLDIE 639

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             +           +    ++L+N+   A     +G            + +FS++  G  
Sbjct: 640 LSLAPELAEYYYGAADRLRQVLMNIVGNAVKFTEKGQVHLSIKPTQDGKVLFSVQDTGIG 699

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               ++   I +        +        +       L +     +              
Sbjct: 700 I-ASDRIQHIFEPFTQADASMSRRFGGTGLGTSISKQLVNLMGGEIWASSELGKGSCFEF 758

Query: 212 LLE 214
           +L 
Sbjct: 759 ILP 761


>gi|95931005|ref|ZP_01313733.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95132901|gb|EAT14572.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 502

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 63/224 (28%), Gaps = 20/224 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAI- 61
            +  L ++  + + + H+I +P+  I  ++     +L  +      V  ++   +     
Sbjct: 263 QADRLASIGEMATGMAHEIKNPLAGISGAVTVLADDLAKDDPRRQVVQDILAQIARLNKT 322

Query: 62  --IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLSRER 115
               L F R        VD    +      +          Q++             ++ 
Sbjct: 323 ATDLLNFGRPGSPQCDFVDVNDVVKQTLFFVAQHPEAKNIHQITELTRDLPPVWADRKQI 382

Query: 116 AKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++LLN+ + A  S+P               D +      +   G+     E   +I   
Sbjct: 383 QQVLLNIIINALQSMPNGGSLTVQTELTREHDERRYVRIQIVDTGSGIPV-ETLDKIFTP 441

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       L  +N   +      D     +  L 
Sbjct: 442 FYTTKNRGTGLGLAICKQLVKQNDGHISVLSSPDEGTSFAISLP 485


>gi|329955232|ref|ZP_08296189.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
 gi|328526231|gb|EGF53250.1| PAS domain S-box protein [Bacteroides clarus YIT 12056]
          Length = 929

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 16/228 (7%), Positives = 46/228 (20%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
           AK        +    L  + + H+I +P+ AI     ++    +         ++  ++ 
Sbjct: 515 AKEKAETSDQLKSAFL--ANMSHEIRTPLNAIVGFSRIIAESTDDEERKNYYDIVEANNE 572

Query: 59  SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +             +               + +  +                   
Sbjct: 573 RLLQLINEILDLSKIEAGMVEFTIAPMRLHLLCNEIYNALKFRCPMGVELVYEASDEDIV 632

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A      G       +   +E  F +   G      +     
Sbjct: 633 IEGDKNRIFQVVSNLIGNAFKFTTNGSVSYGYRRK-GSEIEFHVSDTGIGIEADKLSKVF 691

Query: 168 VDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +       +       +               L 
Sbjct: 692 ERFVKVNNFAQGTGLGLSICKTIIERLGGTISVSSEMGKGTTFLFTLP 739


>gi|320354600|ref|YP_004195939.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123102|gb|ADW18648.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 984

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 20/244 (8%), Positives = 52/244 (21%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54
           + +        ++ +  +   I HD  + +  I    EL+     +    +  +      
Sbjct: 600 LLEQEVRQAQKLEAIGTMAGGIAHDFNNILAGIMGYAELILRDLEQQPQARHQQLLRNIL 659

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111
            +   A   +  +        S    I L        D I       ++           
Sbjct: 660 SAGERARALIHKILTFSRQAESEPQPIRLQQTIDDAVDLIRASLPSTIAIEHRSDSRATV 719

Query: 112 ---SRERAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLK 152
                +  ++ +NL   A  ++                                    + 
Sbjct: 720 LADPIQIHQVFMNLCTNAGHAMKESGGTLTISLEDVTLDSQFTSDHPELRPGEYVRVEVS 779

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            +G          +I D    +    +   +    V  +       +            +
Sbjct: 780 DSGEGI-PEHLLGRIFDPFFTTKKKGEGTGLGLAMVHGIVSSMHGLIQVASQPGQGTRFT 838

Query: 211 ALLE 214
             L 
Sbjct: 839 IHLP 842


>gi|269216257|ref|ZP_06160111.1| sensor histidine kinase [Slackia exigua ATCC 700122]
 gi|269130516|gb|EEZ61594.1| sensor histidine kinase [Slackia exigua ATCC 700122]
          Length = 341

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 62/214 (28%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----SSMSAIIRLKFMRLAFGYTG 75
           S + H++ +P+ AIH S E + +  +  E+           S         +        
Sbjct: 125 SDVAHELRTPLTAIHGSAETMLDPDMPPEMRARFCQTIMSESERLTRLANDLLTLQHIED 184

Query: 76  SVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMV 125
             DS                  +          ++V      +  + +R  +++ NL   
Sbjct: 185 GTDSATLERIDLHRVANEVADALEPLIDERGGTIEVIGEAPDVLGNPDRLYQVVYNLAAN 244

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVEST--IDSHD 180
           A   + + G V I ++   + +I S+  +G           FT+   G+           
Sbjct: 245 ACRFIGQEGHVVIRLEGFADRSIVSVVDDGPGFGDIDPKLLFTRFYRGDNSRARTTGGSG 304

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +   +   +    +       S  L 
Sbjct: 305 LGLAIAKSIVDAHDGTIEAYNVPRGGACFSVSLP 338


>gi|322418315|ref|YP_004197538.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320124702|gb|ADW12262.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 484

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 74/228 (32%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQL-I 53
            + +   + S  + +   L + + H+I +P+ AI   +  L+     +     ++++  +
Sbjct: 253 EEALACLIQSEKMASTGKLVAGVAHEINNPLAAISACMYRLEGKLGPDGDSCWDIIKAGM 312

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108
                       F R++      V S     + E      +   +   V+          
Sbjct: 313 ARIENIVKQLSDFSRVSALELQHVPSDQFFQEAEAFGAMLLERGRTALVAVDHCNPPVLL 372

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++LLNL + A A+   G +V +     +     +++ +G      E   +I 
Sbjct: 373 HIDKAKMHQVLLNLLVNAAAASQPGAEVELRAAMDEAGYRLTVRDSGTGI-PEEDQEKIF 431

Query: 169 DGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +        I       +   ++ R+          V S L+ 
Sbjct: 432 DIFFTTKPAGVGSGIGLAVCKSIVDLHRGRIEVSSRPGE-TVFSVLIP 478


>gi|326384015|ref|ZP_08205698.1| ATP-binding region ATPase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197175|gb|EGD54366.1| ATP-binding region ATPase domain-containing protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 474

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 74/233 (31%), Gaps = 19/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60
           A++      S + +    +   H++ +P+ +I    EL+       D+ ++ I   +   
Sbjct: 226 ARSERQAWQSEEKMRRFVADASHELRTPLTSIKGFSELMAMGAVDSDDAVRRISSEADRM 285

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------VQVSWTGEKI 109
            + ++ + +            G  ++  ++ED +   +               +      
Sbjct: 286 SLLVEDLLMLARLDAQRPLSRGEVEMVPLVEDAVEAARAGSPGADIAFDVPAQTGDPVIS 345

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
                  +++ NL   A A       + +SV+ +  E   ++  +G      +    F +
Sbjct: 346 GDPSRLTQVVRNLVGNAVAHAGPDAHIQVSVESAPTEVRVTVADDGPGMTAEDAEHVFER 405

Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              G+     D     + +    V  L   +  R+  +           +L +
Sbjct: 406 FYRGDDSRHRDVPGAGNGLGLSIVAALVDAHGGRVGVDTAPGAGARFWFVLPR 458


>gi|323697590|ref|ZP_08109502.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323457522|gb|EGB13387.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 495

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 16/229 (6%)

Query: 2   AKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVM 50
            + +   L  S  L       + + H+I  P+  I    EL  +            + ++
Sbjct: 257 KQELERQLRQSDRLAKIGQFSAGVAHEINEPLANILGFAELALQTPGLPEQVTTDLNNIV 316

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +       + F R        +D    +    ++ E          V      + 
Sbjct: 317 DSSLHAREIIRKLMFFGRQLPPQPAFIDFNETVEQALRITESGARRGDIEIVRDFDRSLP 376

Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   ++++NL + A  ++  GG VTI   + +N+    ++  G           
Sbjct: 377 KILADPQHMKQVVVNLVVNAIQAMTEGGTVTIRTINHENDAYLVVEDTGPGMTPDVLKMI 436

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +D    +    +  +   +   +  E   D    +   L 
Sbjct: 437 FTPFFTTKDVDQGSGLGLSVIHGIVKAHGGFIQVESSPDAGTRVEVALP 485


>gi|296133877|ref|YP_003641124.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296032455|gb|ADG83223.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 534

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGI-------EDEVMQL 52
           MA+ I   L     L     +   H++ +P+ AI    ELL +           D + ++
Sbjct: 288 MAE-INLQLEKANRLKNEFLANTSHELRTPLTAIIAFTELLLDEETGPLNNMQRDYINEI 346

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------- 102
              S          + LA    G  +       I  +    +   + +            
Sbjct: 347 NESSQQLLNYINNLLDLAKIEAGKFEVHREAVSISDLCSSVLRKTEPIFKVKKQQVIIDV 406

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLAR 159
                       +  ++L+NL   AH   P  G++ +  + +    + I S+  NG    
Sbjct: 407 EDNIPPVYVDPPKMMQVLINLLSNAHKFTPEDGRIELRARMNDRRDQVIVSVSDNGVGIS 466

Query: 160 FP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +  + V+   E       +    V  +   +  ++  E I          + 
Sbjct: 467 SENLELIFEKFRQVNNRPEPLYQGTGLGLALVKHIVEMHGGQVKVESILGQGSTFYFSIP 526


>gi|325674849|ref|ZP_08154536.1| phosphate regulon sensor histidine kinase protein PhoR [Rhodococcus
           equi ATCC 33707]
 gi|325554435|gb|EGD24110.1| phosphate regulon sensor histidine kinase protein PhoR [Rhodococcus
           equi ATCC 33707]
          Length = 464

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 56/216 (25%), Gaps = 18/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             +   H++ +P+  I    EL  +    D  M + R+   +  + L    L        
Sbjct: 248 FVADASHELRTPLATIRGFAELYRQGAAPDPEMVMSRIEDQAQRMGLLVEDLLLLARMDA 307

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------------DLSRERAKILLNLFM 124
                   ++ +     AV      S     +                    +++ NL  
Sbjct: 308 QRPFERHPVDLLAVAADAVHDARARSPQRRIMLEVLPGSAPAEVLGDDARLRQVVGNLVG 367

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSH 179
            A    P    VT+ V     + +  +   G      +    F +    +     T    
Sbjct: 368 NALDHTPAEADVTVRVGTDGADAVVEVADTGPGLAEGDAARVFERFYRADASRTRTSGGS 427

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +   +  +    +       L +
Sbjct: 428 GLGLSIVAAIVAAHGGTVDVDSAPGNGATFRVRLPR 463


>gi|228940724|ref|ZP_04103287.1| hypothetical protein bthur0008_33670 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228818968|gb|EEM65030.1| hypothetical protein bthur0008_33670 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941356|gb|AEA17252.1| sensor protein atoS [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 510

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIMDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  RL      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 500


>gi|229177846|ref|ZP_04305219.1| hypothetical protein bcere0005_12100 [Bacillus cereus 172560W]
 gi|228605637|gb|EEK63085.1| hypothetical protein bcere0005_12100 [Bacillus cereus 172560W]
          Length = 402

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 67/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSGTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +   + 
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIVG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|229917891|ref|YP_002886537.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469320|gb|ACQ71092.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 432

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 69/232 (29%), Gaps = 21/232 (9%)

Query: 1   MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           M + +  N   + +L +++     H+  +P+ +I     LL   G  ++ ++        
Sbjct: 202 MTETLETNETKNEELASVM----AHEFKTPVASILGYATLLKRGGTSEKQIEYADKIERE 257

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTGEKI 109
                +  +          +++GL   E           +  D     KR+++  T +++
Sbjct: 258 GKRLSRLSQDVLRLAKLDHTIVGLHATELSLSEQIRETILSLDSEMTRKRMKLDLTMDEV 317

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
            +  +     ++  NL   A         + + V++        ++  G      +    
Sbjct: 318 VMKGDASLLQQVWTNLLQNAVEYAYEESTLHLLVKEDATHITCEIRDEGEGMTPEQVDRA 377

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +     +   +       +   +   +              +  K
Sbjct: 378 FERFYQADTSRHRNGSGLGLAIARQIVQLHGGEITLSSEKQIGTTAKVVFPK 429


>gi|138896292|ref|YP_001126745.1| sensory box histidine kinase PhoR [Geobacillus thermodenitrificans
           NG80-2]
 gi|134267805|gb|ABO68000.1| Sensory box histidine kinase PhoR [Geobacillus thermodenitrificans
           NG80-2]
          Length = 583

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 66/220 (30%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ +I    E L      +    +  + +I   S      ++ +     
Sbjct: 362 FVANVSHELKTPVTSIKGFAETLLDGAMKDEEALEHFLTIILKESERLQTLVEELLDLSK 421

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------KIDLSRERAKILLN 121
               G+   ++ +     I +    F    +  Q+    E               +IL+N
Sbjct: 422 IEQHGFQLQLEDVDVAEVIAEAAAVFRQKAEEKQIDLRVEALPGLVIRGDRNRLKQILIN 481

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A A  P  G+V +  ++ + E +  +K  G      E   +I +            
Sbjct: 482 LLANALAYTPEHGQVAVEAEEKEKEVLIHVKDTGIGIEEKEIP-RIFERFYRIDKARSRD 540

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  L   +   +          V +    K
Sbjct: 541 SGGTGLGLSIVKHLVEAHHGYITVASEVGRGTVFTIHFPK 580


>gi|325262999|ref|ZP_08129735.1| sensor histidine kinase KdpD [Clostridium sp. D5]
 gi|324032093|gb|EGB93372.1| sensor histidine kinase KdpD [Clostridium sp. D5]
          Length = 892

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 68/234 (29%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            + I   L    L A L   I HD+ +P+ +I  + E L       ++   +     +  
Sbjct: 654 QQEIDMKLQKEQLRANLLRSISHDLRTPLTSISGNAETLLINEGKVEKEQRKKIYKDIYD 713

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S     +    + +     G+++          +    +  V          V+     
Sbjct: 714 DSMWLINLVENLLSVTRIENGTMELNLQGEIVEDVIEEALHHVNRRGKEQKIHVECDELL 773

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   ++L+NL   A    P G  + I  +   +  + S+  NG      E+ ++
Sbjct: 774 MAKMDVKLMLQVLINLTDNAVKYTPAGSDIRIKAEKQGDRAVISVTDNGLGI-PAEQKSR 832

Query: 167 IVDGNVESTI------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +            +       + + +   L          V    LE
Sbjct: 833 LFQMFYTAGHAVSDGRRGMGLGLTLCKSIVNAHGSELKVYDNVPKGTVFRFELE 886


>gi|300117558|ref|ZP_07055345.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298725093|gb|EFI65748.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 357

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 72/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKREHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLMKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++ +G      +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDSGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCIP 352


>gi|229084116|ref|ZP_04216405.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44]
 gi|228699152|gb|EEL51848.1| hypothetical protein bcere0022_7620 [Bacillus cereus Rock3-44]
          Length = 453

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK +    +S  +     S + H+  SP+ +I    + L    +             S 
Sbjct: 213 MAKKLR---NSEQMRQEFVSNVSHEFQSPLSSIQGFSKTLQTNNLTKSEQTHYLEIIESE 269

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             R+  +        S+D                  D    + W   K +L+ E      
Sbjct: 270 SRRMSSLCKQLLLLASLDKEDLTLRKRSFDLGKQIKDIIFMLEWEWRKKELAVEMDVPNI 329

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     ++ +NLF  +      GG +    ++ + E   S+   G      E    
Sbjct: 330 QIYGDENLLYQVWMNLFTNSIKFTESGGTIAFEAEELETEWRISITDMGIGIPENEIKKI 389

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +      ++   +    V  +   +   +  +         S  L+K
Sbjct: 390 FDRFHKVDTARNRNVNGSGLGLSIVKKIIDLHSGAITVDSELGKGTTFSIYLQK 443


>gi|66044087|ref|YP_233928.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63254794|gb|AAY35890.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 984

 Score =  116 bits (289), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 923

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975


>gi|320086707|emb|CBY96478.1| two component sensor kinase/response regulator protein RcsC
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 915

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 419 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 478

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 479 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 538

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 539 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 597

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 598 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 656


>gi|302185889|ref|ZP_07262562.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642]
          Length = 984

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 923

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975


>gi|299147467|ref|ZP_07040532.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|298514745|gb|EFI38629.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1341

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 807  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 865  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R ++   +      A      GG +++ + D  +E +FS+  NG      +   
Sbjct: 925  CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 985  IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037


>gi|298482475|ref|ZP_07000661.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298271454|gb|EFI13029.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1341

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 807  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 865  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R ++   +      A      GG +++ + D  +E +FS+  NG      +   
Sbjct: 925  CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 985  IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037


>gi|295088146|emb|CBK69669.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
          Length = 1341

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 807  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 865  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R ++   +      A      GG +++ + D  +E +FS+  NG      +   
Sbjct: 925  CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 985  IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037


>gi|293371658|ref|ZP_06618069.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
 gi|292633355|gb|EFF51925.1| putative flagellar protein FliS [Bacteroides ovatus SD CMC 3f]
          Length = 1341

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 807  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 865  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R ++   +      A      GG +++ + D  +E +FS+  NG      +   
Sbjct: 925  CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 985  IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037


>gi|283786031|ref|YP_003365896.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
 gi|282949485|emb|CBG89098.1| two-component system response regulator [Citrobacter rodentium
           ICC168]
          Length = 879

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 383 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 442

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + ++                    +
Sbjct: 443 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFI 502

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A      G  V    +DS       ++  G     
Sbjct: 503 EPDVPVAMNGDPMRLQQVISNLLSNAIKFTDIGCIVLHVQRDSD-YLSIRVRDTGVGIPA 561

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 562 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIP 620


>gi|258513455|ref|YP_003189677.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777160|gb|ACV61054.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 686

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 81/223 (36%), Gaps = 11/223 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQ 51
           M + +    S ++LVA L + I H+I +P+  +   L++L             +  E + 
Sbjct: 464 MEREMD-RFSRLNLVAELAAGIGHEIRNPLTTVRGFLQMLRSKKNAQYMEYYDLMIEELD 522

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +   L          +I +  + Q        + ++++    E +  
Sbjct: 523 RANSIISEFLSLARNKPLDLHKQNLKQIIINISPLIQAEAIISDKNIKLELEDIPELLLD 582

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +E  +++LNL + A  ++  GG +TI    + ++ + ++K  G   +      +I    
Sbjct: 583 KKEIHQLILNLVLNAIEAMFPGGTITIKTYTANDKVVLAIKDEGQGIKPN-ILEKIGTPF 641

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +   +       +A  +   +  E   +   VL   + 
Sbjct: 642 FTTKENGTGLGLSMCHSIAGRHNATIKYESGINGTTVLVEFIP 684


>gi|269792981|ref|YP_003317885.1| PAS/PAC sensor hybrid histidine kinase [Thermanaerovibrio
            acidaminovorans DSM 6589]
 gi|269100616|gb|ACZ19603.1| PAS/PAC sensor hybrid histidine kinase [Thermanaerovibrio
            acidaminovorans DSM 6589]
          Length = 1362

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 59/221 (26%), Gaps = 26/221 (11%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            + + H+I +P+ AI    ++L+         +    + + +   L  +         +++
Sbjct: 903  ANMSHEIRTPMNAILGYTQILERDPSLGPKQREKVQAIIRSGNHLLELLNDLLDLSKIEA 962

Query: 80   LIGLGDIEQVIEDFIAVDKRVQVSW-----------------TGEKIDLSRERAKILLNL 122
             +     E      +  D  V                             R+  ++L+NL
Sbjct: 963  GVLEIRQEVFPLRKMLQDVEVMFRGGAEAKGLHLLLEGLDQAPHWVSGDQRKLRQVLVNL 1022

Query: 123  FMVAHASLPRGG------KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
               A      G       ++    +  + +  F ++  G      E    F     G+V 
Sbjct: 1023 LGNAIKFTSEGMVVLRAQEIHRDQEGGRTQLRFQVEDTGPGIPEEELEVIFDPFGQGSVG 1082

Query: 174  STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +       +       H  V +  + 
Sbjct: 1083 LKAGGTGLGLAISKRIVEAMGGDIRVSSQVGHGTVFTVTVP 1123


>gi|237715249|ref|ZP_04545730.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262405093|ref|ZP_06081643.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646474|ref|ZP_06724113.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
 gi|294808662|ref|ZP_06767396.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
 gi|229444558|gb|EEO50349.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262355968|gb|EEZ05058.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638187|gb|EFF56566.1| putative flagellar protein FliS [Bacteroides ovatus SD CC 2a]
 gi|294444101|gb|EFG12834.1| putative flagellar protein FliS [Bacteroides xylanisolvens SD CC 1b]
          Length = 1341

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 807  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 865  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R ++   +      A      GG +++ + D  +E +FS+  NG      +   
Sbjct: 925  CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 985  IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037


>gi|160885605|ref|ZP_02066608.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
 gi|156109227|gb|EDO10972.1| hypothetical protein BACOVA_03607 [Bacteroides ovatus ATCC 8483]
          Length = 1341

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 807  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 865  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R ++   +      A      GG +++ + D  +E +FS+  NG      +   
Sbjct: 925  CLVWGDRMQLQKVVNNLLSNAFKYTSDGGSISMELADGADECMFSVSDNGAGISEEDYVK 984

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 985  IFERFYQAENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037


>gi|94968686|ref|YP_590734.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550736|gb|ABF40660.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 384

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 19/222 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAII 62
            ++    L S I HD  + + AI +  +L  +       MQ            ++ +   
Sbjct: 136 RLEAAGKLASGIAHDFNNMLTAILSYADLQLQHVESGSAMQRYVLGIQAAAERAAQTTHQ 195

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKIL 119
            L F R              +    ++I   I  D  +         ++  +     ++ 
Sbjct: 196 LLAFCRRQKMQFAETQVNDVIQQSSELIGRLIGEDIELAFDLDRGIPEVWADAGQLNQVF 255

Query: 120 LNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
           +NL + A  ++PR             ++        +   G      +    I +    +
Sbjct: 256 VNLAVNARDAMPRGGRLLFATSKRGTEEKDKRVSIFVHDTGMGI-GADVLPHIFEPFFTT 314

Query: 175 TIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +  + K  +L              L 
Sbjct: 315 KEQGKGTGLGLATVYGIVKQMKGEILVSSEPGRGTTFEIALP 356


>gi|308271787|emb|CBX28395.1| hypothetical protein N47_G37190 [uncultured Desulfobacterium sp.]
          Length = 318

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGA----IHNSLELLDE----VGIEDEVMQ 51
            K+    + S  L A+  L + I H++ +P+ +    I + +EL++E      I+ E++ 
Sbjct: 73  EKSQQQLIQSESLAAIGQLVAGIAHELNNPLSSTASLIQSDIELINEIKDKRDIDHEILA 132

Query: 52  LIRLSSMSAIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVS 103
            +R S                  R    Y  +V+    L D  + +   + + +  +   
Sbjct: 133 DLRFSLREMNRAETIVKSVLGLSRQTQTYAENVNINKILDDALRVLHNQYSSSNIEIVKD 192

Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNL 157
           +     +++   A   ++ +N+   A  +LP                N      +  G  
Sbjct: 193 FDENLPEINGNFANLGQVFINVIKNALQALPDDKGFIYLKTRYNKETNCIEIECRDTGEG 252

Query: 158 ARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +     +  Y    +  ++   +               L 
Sbjct: 253 IPNEIIKDIFKPFFTTKDVGKGSGLGLYISHEIIKKHGGLISVSSNKGKGSTFVIALP 310


>gi|294624628|ref|ZP_06703300.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292601063|gb|EFF45128.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 667

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 235 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 294

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                           L   E   E    V +   
Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHV 354

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ + ++      + S+  +G+     
Sbjct: 355 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 414

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473


>gi|297568908|ref|YP_003690252.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924823|gb|ADH85633.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 639

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 68/230 (29%), Gaps = 19/230 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSM 58
           +        M+ + ++   I HD  + + AIH ++ L       +      +Q   ++ M
Sbjct: 269 EEEAIRAQKMESLGVMAGGIAHDFNNALTAIHGNVSLARLQLPANGETAGLLQSAEVAIM 328

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113
            A    + +         +  ++ +  + +   + I     V+  +            + 
Sbjct: 329 QASGLARQLLTFAKGGKPIRKVVPMATLIRDSVEMILRGSAVRAEFELATDLRPAEVDAG 388

Query: 114 ERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +  ++L NL + A  ++P            +         +     +   G     PE  
Sbjct: 389 QITQVLQNLAVNARQAMPEGGVLQVKADNHQGPPPDPAIPHWLCLIISDQGPGI-PPELQ 447

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D    +    + +       +  ++   +            + LL 
Sbjct: 448 ERVFDPYFTTKEGGNGLGLAICQAIVSKHNGTIKATASAGGGTEFTILLP 497


>gi|222151384|ref|YP_002560540.1| hypothetical protein MCCL_1137 [Macrococcus caseolyticus JCSC5402]
 gi|222120509|dbj|BAH17844.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 585

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 58/233 (24%), Gaps = 23/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSM 58
                +  M    +  + + H++ +PI  +    E + +         DE + +I   S 
Sbjct: 347 TEEKKIDQMKQ--MFIANVSHELRTPIQMLQGYTEAILDGIVSEKSDVDEFLNIILDESK 404

Query: 59  SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGE 107
                +  +                + D    +       +      +   +   S   +
Sbjct: 405 RLNRLVNELLNVARIDAGEQVLNLEATDIEELIERTIMNFKHVAEKHETELQTHYSHHSK 464

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
                 +  +++ N+   A      G  ++I   +     I  +   G           F
Sbjct: 465 AWLDYDKMIQVITNIIDNALRYTVAGDVISIHTDEDDENLIIRISDTGVGIAPEHIDNIF 524

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +           +  + V  +   +   +  +            + K
Sbjct: 525 ERFYKVDQARTRGKHGTGLGLFIVKSIVEGHHGSINVDSTVGKGTTFVISIPK 577


>gi|171780276|ref|ZP_02921180.1| hypothetical protein STRINF_02064 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281624|gb|EDT47059.1| hypothetical protein STRINF_02064 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 489

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 56/221 (25%), Gaps = 23/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +PI  I   L LL     D+     E +      +    I +  M     
Sbjct: 265 FVSDVSHELRTPIAVIKGHLGLLQRWGKDDPETLCESLDAAYHEADRMSILVNDMLDMVR 324

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAKILLN 121
             GS D   G     +   D +  + R+            +              + +L 
Sbjct: 325 VQGSFDLHKGEITDLKQSIDLVLGNFRILYPDFRFSLTSTIDDCIYAEIYKHHFEQAILI 384

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----- 176
           L             + +++       I  ++  G      +                   
Sbjct: 385 LIDNGVKYSSGSRNIHVTLDVLGENAIVKVRDEGEGISQDDLNHIFERFYRTDKSRNRVS 444

Query: 177 --DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 I    +  +     +++    + D     + ++ +
Sbjct: 445 TQGGLGIGLAILKQIVDAYNLKVSVSSVVDEGTEFTLVIPR 485


>gi|160889978|ref|ZP_02070981.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270294654|ref|ZP_06200856.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317481371|ref|ZP_07940439.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860366|gb|EDO53797.1| hypothetical protein BACUNI_02412 [Bacteroides uniformis ATCC 8492]
 gi|270276121|gb|EFA21981.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316902467|gb|EFV24353.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 497

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 59/233 (25%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--SM 58
           + + +     S +L ++  + + H+I +P+ AI     LL     +    +++  +    
Sbjct: 261 LNEALQKAQRSDELKSVFLANMSHEIRTPLNAIVGFSTLLACGDADLSRQEIMEFTSLIE 320

Query: 59  SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                L  +                 +   V     L  I    +  +     + +    
Sbjct: 321 KNSQLLMVLISDILDLSKIESNTMEFHFEKVSLNGILESIYSAQKMNLRKGVELLLDLPD 380

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +  +     +++ NL   A      G                 ++  G      E 
Sbjct: 381 RAAVIYTDPTRLGQVVNNLINNAVKFTAEGRITIGYRLKDFATLEVFVEDTGTGM-SEEV 439

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I +   +    +    +       +      ++            + +L 
Sbjct: 440 LAHIFERFYKGDAFVQGTGLGLAICRTIVERFHGKIEVASTLGKGSRFAIVLP 492


>gi|39995948|ref|NP_951899.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982712|gb|AAR34172.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 787

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 31/245 (12%)

Query: 1   MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
           M           M+ V  L   I HD  + +GAI  S EL      E     E+++++  
Sbjct: 399 MQLESQLRHAQKMEAVGTLAGGIAHDFNNILGAIIISTELALDDAKEGASNPELLEIVLN 458

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEK 108
           ++      +  +             + +  I +     +       +             
Sbjct: 459 AAERGRNLVTQILAFSRQGEQKRQTVRIAPIVKECLKLLRASLPTTIDIRPTISCEDAMA 518

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLK 152
                +  ++++NL   A  ++     +                T     +      S+K
Sbjct: 519 SIDPTQIHQVIVNLCTNAAHAMHGKVGMLEVTLTAVTLHDDITGTHPDLHAGPYVELSVK 578

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+     E   +I D    +        +    V  +  ++   ++ E        + 
Sbjct: 579 DTGHGM-GSEVLERIFDPFFTTKEQGRGTGLGLPVVYGIVKDHGGGIVVESEPGSGTTVR 637

Query: 211 ALLEK 215
            L+ +
Sbjct: 638 VLIPR 642


>gi|320160584|ref|YP_004173808.1| putative two-component hybrid sensor and regulator [Anaerolinea
           thermophila UNI-1]
 gi|319994437|dbj|BAJ63208.1| putative two-component hybrid sensor and regulator [Anaerolinea
           thermophila UNI-1]
          Length = 534

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 72/230 (31%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-- 57
            ++    + +  + A+  L + + H+I +P+ ++ N L L     ++ E        +  
Sbjct: 300 EESQQALVQAEKMAAVGRLVASLAHEINNPLQSLQNCLHLALRADLDPEQRSHYLNMTET 359

Query: 58  ---------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                       +   +             ++  + D+ +       V+  V +    E 
Sbjct: 360 ELNRLIQTVRRMLEFYRPSSRERTPIRLAKAVQHVLDLMRSEVHSRGVEVAVHIPEEIEI 419

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQ 166
             L  +  ++  NL + A  ++       I ++    + + + +++ +G     P+   +
Sbjct: 420 TGLEDQIQQVFFNLVLNAMDAVEECETKRIWIECVSDEKDWVITVEDSGRGV-PPDIRDR 478

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
           I +  + +  +   +       +   +   L                  K
Sbjct: 479 IFEPFISTKKNGTGLGLAVSYGIIEAHGGTLALIPGKYGQGACFEIRFPK 528


>gi|228986732|ref|ZP_04146862.1| hypothetical protein bthur0001_34090 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228773063|gb|EEM21499.1| hypothetical protein bthur0001_34090 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 510

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIHTCNMQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|218441012|ref|YP_002379341.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173740|gb|ACK72473.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 477

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 64/236 (27%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51
           +A+     L+ +         L S + H++ +P+  +   L+  L         + E ++
Sbjct: 238 LARTFEQMLTRLSDAWEHQRQLVSDVSHELRTPLTIVSGYLQSTLRRGSNLTPTQREALE 297

Query: 52  LIRLSSMSAIIRLKFMRL------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +  + +   I  L+ +           +       +     +   +     D+++     
Sbjct: 298 IAGMEADRTIKLLQDLLNLARVDSGQMHFKLESINLNDWLTQVKSKTEKYSDRQINWEIP 357

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE- 162
              I +  +  ++L  L+ +   ++      T          + I  +   G      + 
Sbjct: 358 PNLIIIKADPDRLLQVLYNLIDNAIKYSDPQTPITVKLDRQQQAIIQVCDRGVGIPLQDQ 417

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   +       +    V          +          V S    
Sbjct: 418 ARIFERFYRVDETRSRSTGGTGLGLSIVKTFVEGMGGNISVSSQPGKGSVFSLTFP 473


>gi|169335527|ref|ZP_02862720.1| hypothetical protein ANASTE_01941 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258265|gb|EDS72231.1| hypothetical protein ANASTE_01941 [Anaerofustis stercorihominis DSM
           17244]
          Length = 896

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 24/236 (10%)

Query: 2   AKNICFNLSS--MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS 56
            KN    L +    L A L   I HD+ +P+ +I  +  +L    +    ++  +L    
Sbjct: 654 EKNEKALLEAKQEKLRANLLRSISHDLRTPLTSISGNASVLLKDFDSLDNNKKHELYEDM 713

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTG 106
              ++  +  +      T   D  + L    ++            +  +V+  ++V    
Sbjct: 714 YDDSMWLINLVENLLSVTRIEDGSMNLNIEPELLSEVIGEALKHINRKSVEHNIKVENND 773

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           E I    +     ++++N+   A    P G  +TI V         S+  NG      E 
Sbjct: 774 ELIMAKMDSRLIMQVIINIVDNAIKYTPEGSDITIKVNKKNGYVYTSIIDNGKGI-SDEG 832

Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +            +     +  Y    + + +   L+ +       + +  L+
Sbjct: 833 KKNLFKMFYTGGNIADSRRGLGLGLYLCKTIVNAHGGELMVKDNTPKGTIFTFSLK 888


>gi|220925264|ref|YP_002500566.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219949871|gb|ACL60263.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 713

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 66/237 (27%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +++    S  +  ++      + + H+  +P+  I    +L+ +  +  E    IR    
Sbjct: 187 RSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLDTPLSPEQETYIRAVKT 246

Query: 59  SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQV 102
           S           +  +    G +D      D   ++E  +             +   +  
Sbjct: 247 SGEALLSLIDGILDFSKIEAGRLDLAAEPFDPAGLVESVVELLAPRAQDKGLEIAADLAE 306

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               + +  S    +ILLNL   A      GG    + +    E   +++  G       
Sbjct: 307 DLPLQVVGDSDRVRQILLNLAGNAVKFTESGGVGVTAERA-GAEIALTVRDTGPGIPEER 365

Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      DG+     +   +       L      R+      D       +L 
Sbjct: 366 LPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIEVTSRPDEGSCFRVVLP 422


>gi|326804030|ref|YP_004321848.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651194|gb|AEA01377.1| PAS domain S-box protein [Aerococcus urinae ACS-120-V-Col10a]
          Length = 623

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLA 70
              S + H++ +P+ ++ +  E L +  I+D  +       + R +     +    + L+
Sbjct: 388 QFVSNVSHELRTPLTSVRSYSEALADGAIKDSELAVEFLGVIQRETDRMIRMISDLLNLS 447

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--------------- 115
              +   +  + L D + ++   +     +  S      +   +R               
Sbjct: 448 RMDSNRQEMNLELIDFQGLVNHILDRFDMMIQSEDYVNEEYHIQRELTKSPIWVEADQDR 507

Query: 116 -AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171
             +++ N+   A    P GG +T+ +  + NE I S++  G           F +    +
Sbjct: 508 LTQVIDNILNNAIKYSPDGGTITVRLMTTHNEAILSVQDQGLGIPQKALGHVFDRFYRVD 567

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +   +  ++    I++        L 
Sbjct: 568 KARSRQQGGSGLGLAIAKEVVELHHGKIWANSIENKGSTFFISLP 612


>gi|324112761|gb|EGC06737.1| RcsC Alpha-Beta-Loop [Escherichia fergusonii B253]
          Length = 949

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + +    +     ++  G     
Sbjct: 572 EPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLARDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIP 689


>gi|325262522|ref|ZP_08129259.1| sensor protein KdpD [Clostridium sp. D5]
 gi|324032354|gb|EGB93632.1| sensor protein KdpD [Clostridium sp. D5]
          Length = 478

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 75/234 (32%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMS 59
            +     +    + + +   I HD  +P+  I     L+ E     +     L+   +  
Sbjct: 241 QEQTKLEVQREHMKSSMLRSISHDFRTPLTGIMGDCSLMIENHSMDKHTRDDLLHDITEQ 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---------- 109
           ++  +K M      T        +    +V++D +   ++  +     +           
Sbjct: 301 SMWLMKMMENVLSMTKIESGQQFIEKHPEVVDDIVYEVQKHVIGLKNRRDFRVSLPDQVV 360

Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   ++L+NL   A      GG ++++V   +N   F +K +G+     +   +
Sbjct: 361 VAEMDGKMIMQVLVNLLDNAVKHTQDGGSISLNVSYRENRVYFVVKDDGDGI-EEDMKEK 419

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  V        +     +       +   +  ++  E   +     +  LE
Sbjct: 420 IFNEFVSLSDKSTDSKRGIGLGLAICKEVVEAHGGKIWAENRREGGARFTFWLE 473


>gi|291566313|dbj|BAI88585.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 655

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
           K+I    +   +     S + H++ +P+ +I  SL LL            + ++ +   +
Sbjct: 420 KDITERQAMEKMKDEFISVVSHELRTPLTSIRGSLGLLSSGLLASSPQKSERMLDIAMFN 479

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTG 106
               +      + L   ++G +       ++  ++                    V    
Sbjct: 480 CDRLMRLVNDILDLERMHSGQLPMEKHWVNVADLMIQAADEMLPVAEKAGVDLCVVPLEF 539

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           + +       ++L NL   +        ++  + +  +N  + S++  G      +  T 
Sbjct: 540 KVMVDRDRIIQMLTNLLSNSIRFSGANKRIDFTAKPQENHVLISVRDRGRGIPPDKIETI 599

Query: 167 IVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +         +       +  ++  ++  E I          L 
Sbjct: 600 FGRFQQVDASDSRQNGGTGLGLAICRSIVQQHGGKIWAESIFGDGSTFFVSLP 652


>gi|293400683|ref|ZP_06644828.1| sensory box histidine kinase PhoR [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305709|gb|EFE46953.1| sensory box histidine kinase PhoR [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 404

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 67/236 (28%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           + ++I   L    +     +   H++ +PI  +   +E+L     D+   E E +  +  
Sbjct: 170 LFQDISKTLEGEKMQKRFIADASHELKTPISVLKGMVEILNRDDFDDPITEKEFLSQMAK 229

Query: 56  SSMSAIIR----LKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTG 106
                 +     L+  RL+            +        + + ++       +Q  +  
Sbjct: 230 EVQRLDVLVKDLLQLSRLSLSNVILEREKCDVCALFDKACDSLWKNAQQKQLNIQKDYQT 289

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   +   +++LNL   A      G     +  ++       ++  G   +  +  
Sbjct: 290 LEYAFCDPKRMLQVILNLLSNAIKYSDSGTITLRTRMETTYYI-LEVEDEGCGIQKKD-M 347

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D                 +    V  +   +   +  E       +    L+
Sbjct: 348 EKIFDRFYRVDDARSRQSGGSGLGLPIVRSIIEAHGGNIEVESTYGKGTLFRIKLK 403


>gi|228991502|ref|ZP_04151450.1| hypothetical protein bpmyx0001_22540 [Bacillus pseudomycoides DSM
           12442]
 gi|228768226|gb|EEM16841.1| hypothetical protein bpmyx0001_22540 [Bacillus pseudomycoides DSM
           12442]
          Length = 368

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 83/222 (37%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E  +          +
Sbjct: 139 RSKLVKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPDLPQESREQYIEHILGELN 198

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLS 112
            + +I   ++  A   +  VD+++   +++++I   + +     ++ +           +
Sbjct: 199 RAQVIIDDYLTFAKPASQKVDNIVIDQELKRIISMMMPLCNMNSINVSENLVTGSITGNT 258

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++  GGK++I     +N+    +K +G      E+  +  +   
Sbjct: 259 QHFQQCFLNLIKNSIEAMLNGGKLSIKSSACENKITIVIKDSGIGM-TQEQINRFGEPYF 317

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +     + +       L    I +    L+    
Sbjct: 318 STKTRGTGLGTMVAVKIIETMNGTLDINSIVNKGTTLTITFP 359


>gi|148658559|ref|YP_001278764.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148570669|gb|ABQ92814.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 718

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 60/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLI------RLSSMSAIIRLKFMRLAFG 72
           S + H++ +P+  ++  ++L L E       +Q              +    + +     
Sbjct: 496 SMVSHELRNPLHTLNGFVKLVLQERAGPLTSLQQDFLKMADEQIEQLSSRVAELLEYNRF 555

Query: 73  YTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
             G +     +           +  ++  +   +     V+         +   ++L NL
Sbjct: 556 KAGRLALQPDVGDLALLIAGTVNRLKLQAEQQQLALVSHVTHLPLCRFDGQRIGQVLTNL 615

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS- 178
              A  + P GG +++S      E    +   G      E    F +             
Sbjct: 616 IENAIKATPAGGTISVSADVHDQEVRVRVSDTGVGIPASELGKIFQRFYQVAKHRRTHGN 675

Query: 179 -HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +  R+  E  +      +  L 
Sbjct: 676 NLGLGLAICQQIVEGHGGRIWVESEEGVGTTFTFTLP 712


>gi|254773641|ref|ZP_05215157.1| PhoR [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 465

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L       V   + 
Sbjct: 245 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLLLARLDVQRPLE 304

Query: 83  LGDIEQVIEDFIAVDKRVQVS-------------WTGEKIDLSRERAKILLNLFMVAHAS 129
              ++ +     AV     +               T E         ++L NL   A   
Sbjct: 305 HHRVDLLALASDAVHDAQAMDPKRTITLEVLDGPGTPEVFGDEPRIRQVLGNLIANALQH 364

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ +  +   G      +    F +    +           +   
Sbjct: 365 TPESADVTVRVGTDGDDAVLEVADRGPGMNEQDASRVFERFYRTDSSRARASGGTGLGLS 424

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 425 IVESLVRAHGGTVGVTTAPGQGCCFRVTLPR 455


>gi|224026600|ref|ZP_03644966.1| hypothetical protein BACCOPRO_03357 [Bacteroides coprophilus DSM
            18228]
 gi|224019836|gb|EEF77834.1| hypothetical protein BACCOPRO_03357 [Bacteroides coprophilus DSM
            18228]
          Length = 1342

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV---MQLIRLSS 57
             K     ++   L  +  + + H+  +P+  I + L+ LL E          +++ + + 
Sbjct: 794  EKQHIEEVNRAKL--VFFTNVSHEFRTPLTLIISHLDALLQEQLPVQLYNKLLKIKQNTQ 851

Query: 58   MSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGE---- 107
                +  + +         V           + +   +     A  +++  ++  E    
Sbjct: 852  YMTNLITELLDFRKFTQNHVILHLASQDICLMLEEIYLTFTDYAQQRKIDYTFESEPKNI 911

Query: 108  -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                   +  K+  NL   A    P GG + +      N+ I     +G      EK   
Sbjct: 912  LCWIDRTQMEKVFFNLLSNAFKYTPDGGSIRLKACIQANQLIIQTTDSGTGIPENEKQRI 971

Query: 167  IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       I       +   +   +    I       +  L 
Sbjct: 972  FERFFQGEDQKGQEKYPGTGIGLALTKNIVEAHHGTITVSSILHQGSTFTVTLP 1025


>gi|198244777|ref|YP_002216340.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|197939293|gb|ACH76626.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 915

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 419 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 478

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 479 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 538

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 539 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 597

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 598 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 656


>gi|167630635|ref|YP_001681134.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167593375|gb|ABZ85123.1| signal transduction histidine kinase, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 490

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSSMS 59
           +    ++  ++++A + + + H+I +P+  +   L++   +DE        +L+      
Sbjct: 261 EQELLSIDRLNIIARMAAGLGHEIRNPMTTVRGFLQIMSKMDENEERRRYFELMISELDR 320

Query: 60  AIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           A   +                +     +     + Q          +++++   + I   
Sbjct: 321 ANAIITEFLSFTRRKSKDPQPSNLKRLVEDFFPLLQADALREDKWIQLELADVPDLILDE 380

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +E  ++L NL      ++  G  VTI      +  +  ++  G+     +    +     
Sbjct: 381 KEIRQLLFNLVRNGLEAMAPGKCVTIRTAVDDDVVVLQIEDQGSGISDKD-MKNLGVPFF 439

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +A  +K ++  E         S    
Sbjct: 440 TTKDKGTGLGLPIAYNIASRHKAKITVESSS-KGSCFSVHFP 480


>gi|118464141|ref|YP_879978.1| sensor histidine kinase [Mycobacterium avium 104]
 gi|118165428|gb|ABK66325.1| sensor histidine kinase PhoR [Mycobacterium avium 104]
          Length = 478

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L       V   + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLLLARLDVQRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVS-------------WTGEKIDLSRERAKILLNLFMVAHAS 129
              ++ +     AV     +               T E         ++L NL   A   
Sbjct: 318 HHRVDLLALASDAVHDAQAMDPKRTITLEVLDGPGTPEVFGDEPRIRQVLGNLIANALQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ +  +   G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTDGDDAVLEVADRGPGMNEQDASRVFERFYRTDSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVESLVRAHGGTVGVTTAPGQGCCFRVTLPR 468


>gi|115379567|ref|ZP_01466656.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1]
 gi|115363425|gb|EAU62571.1| sensor protein ZraS [Stigmatella aurantiaca DW4/3-1]
          Length = 766

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV-------MQLIR 54
               L +  L    +L + I H+I +P+G +    E +L ++G            +  I 
Sbjct: 514 ETQLLRAEKLATVGVLAAGIAHEIGTPLGVVRGRAEYVLGKLGPAHPQAAGVGVIIDQID 573

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             S +    L F RL       V     L D  E +  +       +++        L+ 
Sbjct: 574 QVSRTIRQLLDFSRLQPAVARPVALSTLLRDVYELLHLEAERQQVVLELDLPEGLPLLAA 633

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISV----------QDSKNENIFSLKINGNLARFPEK 163
           +  ++   L  +   +                       +      S++ +G       +
Sbjct: 634 DPDQLQQVLVNLVLNACDACSAGGKVHLAAAAPDGSSMGAWGFVTLSVRDDGCGIPVESR 693

Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +    V  +   +  R+  E    H    + L  
Sbjct: 694 NQVFDPFFTTKKRGQGTGLGLAIVAQIVRNHGGRVELESEPGHGTCFTLLWP 745


>gi|114797394|ref|YP_759952.1| sensory box sensor histidine kinase FixL [Hyphomonas neptunium ATCC
           15444]
 gi|114737568|gb|ABI75693.1| sensory box sensor histidine kinase FixL [Hyphomonas neptunium ATCC
           15444]
          Length = 388

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 60/245 (24%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIED 47
            +     +  M         L A+  + S + H++  P+ A+ N LE    LLD    E 
Sbjct: 138 QQRSELRMQEMQSELVHFSRLSAVGTMASALAHELNQPLTAVANYLEASRDLLDSPDPEM 197

Query: 48  EVM---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VD 97
           + +         +    +         ++         +     L D   + +      D
Sbjct: 198 KDVLREALTEAARQAVRAGEIVRKLRSYVSRGEVDARPLGLGPLLADAIALSKLSRDLAD 257

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFS 150
             +++        +  +  +I   +  +   ++        +                  
Sbjct: 258 IPIKLDQEEATDHVMGDPIQIQQVVINLIRNAMDALPNTQDARIMVRVYSAEEPGFVAIE 317

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +  NG      +    I      +      +       +   +   +      +      
Sbjct: 318 VCDNGPGL-TDDLRENIFKPFATTKSQGMGLGLSICQTIVEAHGGVIRAITPPEGGTCFR 376

Query: 211 ALLEK 215
             L K
Sbjct: 377 FTLRK 381


>gi|41406690|ref|NP_959526.1| PhoR [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395040|gb|AAS02909.1| PhoR [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 478

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 58/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L       V   + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLLLARLDVQRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVS-------------WTGEKIDLSRERAKILLNLFMVAHAS 129
              ++ +     AV     +               T E         ++L NL   A   
Sbjct: 318 HHRVDLLALASDAVHDAQAMDPKRTITLEVLDGPGTPEVFGDEPRIRQVLGNLIANALQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ +  +   G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTDGDDAVLEVADRGPGMNEQDASRVFERFYRTDSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVESLVRAHGGTVGVTTAPGQGCCFRVTLPR 468


>gi|325496736|gb|EGC94595.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ECD227]
          Length = 949

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + +    +     ++  G     
Sbjct: 572 EPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLARDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIP 689


>gi|323137204|ref|ZP_08072283.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322397562|gb|EFY00085.1| multi-sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 623

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 26/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIR-----------L 64
           + + H++ +P+ AI    E+L           +  +   + S S                
Sbjct: 364 ANVSHELRTPLNAIIGFSEMLANPELAPTDPGKQREYAEIISNSGHHLLEVVNTILDMSK 423

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILL 120
                   +         +     +++          +      ID      R   +ILL
Sbjct: 424 IESGSMQIFPEPFSLPALIDQCCDMVQLKADQSAVTLLRDYRRDIDDLVADKRACKQILL 483

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
           NL   A    P  GKV I +    N    S+  +G      +   ++ D         + 
Sbjct: 484 NLLSNAVKFTPANGKVKIRLAPEGNHLGISVIDSGIGIAPADL-ARLGDPFFQASASHDR 542

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T +   +    V  L   +   +  E        ++  L 
Sbjct: 543 THEGTGLGLSVVRGLVGLHGGSITVESAPRKGTSVTVRLP 582


>gi|319781532|ref|YP_004141008.1| osmosensitive K channel His kinase sensor [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317167420|gb|ADV10958.1| Osmosensitive K channel His kinase sensor [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 909

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 58/233 (24%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
                  +  L + L + I HD+ +P+ AI  +   L +           E++  +   S
Sbjct: 658 RAKLAAEADRLRSALLTSISHDLKTPLAAIMGAAGTLRDFSAALPEPDRAELLSTVLDES 717

Query: 58  MSAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                     + +    +G+++       +  ++   +   +++      E         
Sbjct: 718 ERLNRFIANLLDMTKIESGAMEPNYAFHYVGDIVGSALQRARKIIGEHKIETDIPRDLPM 777

Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    + L NL   A    P G  + +         +  +   G      +     
Sbjct: 778 LKVDPVLFEQALFNLLDNAAKYAPAGSTIRVQGWTDNGSVLLQIMDEGPGIPPGDLERIF 837

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215
                    D       +               +      D    V +  + K
Sbjct: 838 DTFYRVRKRDQIRAGTGLGLSICRGFIEAMGGTITAANRTDGSGAVFTIKMPK 890


>gi|301056179|ref|YP_003794390.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300378348|gb|ADK07252.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 484

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I       +    L S I HD+ +PI +I   +E + +      E M     +  +
Sbjct: 241 LKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               +  +         +D        E V  +    +   ++                 
Sbjct: 301 KARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHA 360

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF-- 160
                     +  +++ NL   +   + +  K       S N   I  +  NG+      
Sbjct: 361 SPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDT 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E+   +  E        +   LEK
Sbjct: 421 LPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHDGNIWAESELGKGTSIFFSLEK 478


>gi|316931900|ref|YP_004106882.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315599614|gb|ADU42149.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 449

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 68/259 (26%), Gaps = 46/259 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------- 48
           + +     +    + +L  L + + H++ +PI  I+ ++ +LD                 
Sbjct: 190 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFIYGNIHMLDRYRERMAAYLAAIHGGA 249

Query: 49  ---------------------------VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
                                       ++     S       +      G T  +D   
Sbjct: 250 DPAEIDALRRRLKIDALLADYASLIEGTLEGAMRVSDVVKNLRRLSFPRTGETQPIDVDR 309

Query: 82  GLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139
            +    +           +          +    +  +I++NL   A  ++    +  I 
Sbjct: 310 IVRTAARWAVRAKPGHVDLAFDIVPDLTVVGNEGQFHQIMVNLVDNAIDAVRGRPEPRIE 369

Query: 140 V--QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195
           +  +    E   ++  NG          +I +    +    +   +  +    +  E+  
Sbjct: 370 ISARRQDGEVTITVADNGPGLPDGMI-DKIFEPFFTTKPVGEGTGLGLWISYGIVREHGG 428

Query: 196 RLLPEIIDDHNVVLSALLE 214
            L     D+     +  L 
Sbjct: 429 TLAAANRDEGGAAFTVTLP 447


>gi|268609738|ref|ZP_06143465.1| hypothetical protein RflaF_09602 [Ruminococcus flavefaciens FD-1]
          Length = 358

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 60/218 (27%), Gaps = 18/218 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSAIIR--------- 63
           L     S + H++ +P+  I N + LL   G+ E++ M+       +             
Sbjct: 129 LRTDFVSNVSHEMKTPLAVIQNYVALLRSPGLSENDRMEYALAIDDATKRLAALVTNILK 188

Query: 64  -----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                 + +          + +       +   +   ++    +             + +
Sbjct: 189 LNKLENQQIFPENKVIVLSELVCECMLELENEWEKKNIEIETDIDDDIMINADPELLSIV 248

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST 175
             NLF  A      GG V+++V+        S+   G           F +   G+    
Sbjct: 249 WNNLFSNAIKFTDEGGTVSVAVKRMNGGAAVSISDTGCGIDSETGRHIFDKFYQGDTSHA 308

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              + +    V  +       +            + +L
Sbjct: 309 SKGNGLGLALVKRIIDIIGGEITVSSELGKGSTFTVIL 346


>gi|269794985|ref|YP_003314440.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269097170|gb|ACZ21606.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 554

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 68/216 (31%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLEL-LDEVGIED--EVMQLIRLSSMSAIIR--------LKF 66
           L + + H++ +P+ +I   LEL LD+   +     ++++  +S   +           + 
Sbjct: 334 LIASVSHELRTPLTSILGYLELVLDDELPDHARPSLEIVERNSNRLLDLVTEILSASRQA 393

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDLSRERAKILLNLF 123
            +        VD    +    + +         V  +        +       +++ N+ 
Sbjct: 394 SKPLEITPVPVDLGATVLQSAESLLPRARERDVVVDTSGVHNVLTVADPFRMRQVVDNVL 453

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDS 178
             A       G+V ++++ + ++ + +++  G      E                S +  
Sbjct: 454 SNAIKYNVDHGRVDLALEQAGDQLVLTVRDTGIGISGEELPQLFEHFFRSAAVRNSAVHG 513

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +  ++   L  +        ++  + 
Sbjct: 514 SGLGMGIAREIVRKHGGDLTVDSALGQGTTVTITVP 549


>gi|152992222|ref|YP_001357943.1| hypothetical protein SUN_0627 [Sulfurovum sp. NBC37-1]
 gi|151424083|dbj|BAF71586.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 535

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++      + +  +   + + H+I +P+ AI   ++LL+E   ++  ++ +++   S+
Sbjct: 152 LARSKKLAEEATEQKSRFLANMSHEIRTPLNAITGFIKLLEENEKDETKLKYLKIVENSS 211

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLS 112
              L+ +      +      + +             + E F        + +     +  
Sbjct: 212 ESLLQIINDILDISKIESGNLMIEPYNFNPYEDLIMIAELFQTRAAEKNIIFQIRYNNNM 271

Query: 113 R--------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I  NL   A    P G  V   +     +    +K  G      ++ 
Sbjct: 272 PKILFGDALRIKQIFTNLLSNAIKFTPEGSVVKCIIWYKNGQLNIRVKDYGIGISEKKQK 331

Query: 165 TQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +  ++             +     + L       L  +   +   + +  + 
Sbjct: 332 A-IFEPFMQADSSTVRNYGGTGLGLSISLELTRMLGGTLTLKSEKEKGSIFTLSIP 386


>gi|126737354|ref|ZP_01753089.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
 gi|126721939|gb|EBA18642.1| cytoplasmic sensor hybrid histidine kinase [Roseobacter sp.
           SK209-2-6]
          Length = 732

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 23/221 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR------- 68
           A L   + H+I +P+  +    ELL+E  + +E     +    S+   L  +        
Sbjct: 193 AFLA-NMSHEIRTPMNGVIGMAELLEETDLNEEQRMCTKTVVESSNALLSLVNDVLDFSK 251

Query: 69  -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----RERAKIL 119
                +                   +  +       + +    ++            ++L
Sbjct: 252 ADAGKMTVNKAPFDLVECLYSTATLLAPNASEKSIEICLDIPDDQPCWCLGDQGRLRQVL 311

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFTQIVDGNV-----E 173
           +NL   A      G  +     +++++ +   ++  G      +  T             
Sbjct: 312 INLVGNAIKFTETGFVLIKLEVNTESDLMRFLVQDTGIGIPASKVDTIFDVFEQVNSETT 371

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              D   +       L       L            +  L 
Sbjct: 372 RRYDGAGLGLAISKKLIELMGGTLGVTSKLGEGSEFTFALP 412


>gi|156740993|ref|YP_001431122.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156232321|gb|ABU57104.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 396

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 54/236 (22%), Gaps = 40/236 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L + + H++ +P+ +I   +E L          +++   +       + +      +   
Sbjct: 160 LVANVSHELRTPLASIKLLVETLQSDPPAPVAQRMLSQIAQEVDAITQLVEELHELSQIE 219

Query: 78  D---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                               +  I   +E                 +       ++LLNL
Sbjct: 220 SGRVALQLVPTPLAPLVAHTIERIRPQMERKSIRVIACLPDDLPPALIDGNRVGQVLLNL 279

Query: 123 FMVAHASLPRG------------------GKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              A    P G                       S        + S+  NG      +  
Sbjct: 280 LHNASKFTPDGGQVAIEASVIMVGDGSPLPPGIPSSHLPGQWLLVSIADNGIGIPARDL- 338

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +                 +       L   +  R+    ++    +    L 
Sbjct: 339 ARIFERFYKVDRARTRNAGGTGLGLAIAKHLVEGHGGRIWATSVEGEGSIFYLTLP 394


>gi|92114524|ref|YP_574452.1| periplasmic sensor signal transduction histidine kinase
           [Chromohalobacter salexigens DSM 3043]
 gi|91797614|gb|ABE59753.1| periplasmic sensor signal transduction histidine kinase
           [Chromohalobacter salexigens DSM 3043]
          Length = 652

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
           +       + +  L  L  L + I H++  P+ AI    E                    
Sbjct: 403 LRATRDELVQAAKLAVLGQLAAGINHELNQPLAAIRAYTENARAFIARQRHEAADANLAQ 462

Query: 50  -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104
            ++L    +  +    +F R +     +V          ++ +  I       ++     
Sbjct: 463 VLELTERMAEISAQLRQFSRKSGDNLTAVSVASCFAYALRLFQSRIHESGVRVEQHWPEQ 522

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE 162
                       ++L+NL   A  ++       ++  +          +  NG       
Sbjct: 523 AVWVRADPVRLEQVLVNLIGNALQAMNDTAAPCLTLAIVAESTTVYLDVADNGPGIDEAR 582

Query: 163 KFTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              QI +    +      +         +  +   +L    +          L +
Sbjct: 583 L-AQIFEPFYTTKSMGSGLGLGLSISRRIVEDLDGQLDACNLPGGGARFRVRLPR 636


>gi|313905694|ref|ZP_07839055.1| histidine kinase [Eubacterium cellulosolvens 6]
 gi|313469518|gb|EFR64859.1| histidine kinase [Eubacterium cellulosolvens 6]
          Length = 278

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 69/222 (31%), Gaps = 17/222 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------------MQLIRLS 56
               L  L+ S I H   +P+  I    +LL+E  +++E              +  +  S
Sbjct: 58  EKEKLAELI-SDISHQTKTPLANILLYTQLLEEKNLDEECCTLVEEISCQSKKLDFLVQS 116

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            +                G++D++I     + +        + +    +   +  S+   
Sbjct: 117 LVKTSRLETGTFQMTALPGNLDTMIAAAIEQILPYAESKGIRVIYEPASQNAVFDSKWTQ 176

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           + L N+   A    P   +VT+ V+  +  +   +  NG      E    F +   G   
Sbjct: 177 EALFNILDNAVKYSPENSEVTVKVEPYEMFSCILVSDNGIGIADDEKTAVFGRFYRGRNV 236

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  I  Y    +  E    +  E      +V    L +
Sbjct: 237 KDRKGVGIGLYLARQIIEEQGGYITVESAIPKGLVFRIYLPR 278


>gi|266619522|ref|ZP_06112457.1| sensory box histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288868933|gb|EFD01232.1| sensory box histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 468

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M+  +              + + HD  SP+ +I   LE + +      + ++ +  +   
Sbjct: 233 MSDELNKMEEYQK---TFIANVSHDFRSPLTSIKGYLEAILDGTIPPEMYEKYLTRVITE 289

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEKID 110
           +       + M                 DI +VI+D          +K +    T     
Sbjct: 290 TERLNKLTQGMLTLNTLDSKGYLNRTNFDINRVIKDTAASFEGTCEEKNINFDLTFSNNI 349

Query: 111 LSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162
                   +  +++ NL   A         + I       +   S+K  G         +
Sbjct: 350 QMVYADLGKIQQVMYNLIDNAIKFSHHDSTIYIQASGKYEKIFISVKDTGIGIPKDSIKK 409

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + +    ++    D     +    V  +   +   +     +         L K
Sbjct: 410 IWERFYKSDLSRGKDKKGTGLGLAIVKEIIQSHGENIDVVSTEGVGTEFIFSLPK 464


>gi|291288623|ref|YP_003505439.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
 gi|290885783|gb|ADD69483.1| PAS/PAC sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
            12809]
          Length = 1271

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 57/240 (23%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            +         +    +   + I H+I +P+ A+    ELL     + +    I     S 
Sbjct: 790  LKDQKDKAEQAGRAKSEFMANISHEIRTPLNAVIGFSELLSARAQDSKAASYINSIKTSG 849

Query: 61   IIRLKFMRLAFGYTGSV----------------DSLIGLGDIEQVIEDFIAVDKRVQVSW 104
               L  +      +                      +      +     I +   +    
Sbjct: 850  KALLTLINDILDISKLEAAATEPVLAPASIKMLLEEMVRIFGYRTEHTDIKLGYFIAADT 909

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
                +       ++LLNL   A     R          +V D + +   S+K  G     
Sbjct: 910  PKTMMLDISRLRQVLLNLIGNAVKFTERGEVSISVRCEAVNDERVDLYISVKDTGIGI-P 968

Query: 161  PEKFTQIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+   I     +             +       L       +  E         + +L 
Sbjct: 969  KEEMEDIFQAFRQRAGHNINKYGGTGLGLSISSKLVDMMGGEIRVESKVGIGSTFTVILP 1028


>gi|218548321|ref|YP_002382112.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
 gi|218355862|emb|CAQ88477.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Escherichia fergusonii ATCC 35469]
          Length = 949

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + +    +     ++  G     
Sbjct: 572 EPDVPVTLNGDPMRLQQVISNLLSNAIKFTDI-GCIILHLARDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D         +       +       L +     +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFLVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIP 689


>gi|196229798|ref|ZP_03128662.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226124|gb|EDY20630.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 528

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           A+ +      +     L     + + H++ +P+ AI   +++L E       +       
Sbjct: 136 ARRLAQAHEDLKRADRLKIDFLATLSHELRTPLTAILGWIQILKEEAT-PADLAQGLEVI 194

Query: 58  MSAIIRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKRVQ 101
              +     +         ++                    +  +    +        + 
Sbjct: 195 ERNVRLQSQLIEDLLDMSRIEAGKVSLDLQRVDLSAVVNAAVQTVRPTADAKDIRLTSLL 254

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
               G  +       +I+ NL   A    P  G++ +++  +K+     +  NG      
Sbjct: 255 ADVDGVTMGDKNRLQQIVWNLLTNAIKFTPTHGRIQVTMHRAKSNVEVIVSDNGQGIAPE 314

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                                   I       LA  +   L             +  L 
Sbjct: 315 FLDHVFDRFRQADASTTRKHGGLGIGLSIARHLAELHGGHLKVSSLGLGKGASFTLSLP 373


>gi|254410903|ref|ZP_05024681.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182258|gb|EDX77244.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 493

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 65/228 (28%), Gaps = 26/228 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRL 64
             +       +   H++ SP+ AI  S+E++              +  I  ++      +
Sbjct: 266 QQLK---QFTADASHELRSPLTAIKASVEVMQTHPERIHPADVEKLDAIASATSQMSRLV 322

Query: 65  KFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           + +                +      + L  + +  +   +   +  ++ +         
Sbjct: 323 EDLLLLARTDATTPAPTREWAVIPLDELLEDVEERLEPNAEAQDMTLKLLLQPDVFVNGN 382

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168
           + +  ++  NL   A      GG VT+S+   +   + S++  G        P  F ++ 
Sbjct: 383 ASQLFRVFCNLLENALQYTSSGGTVTLSMSTDETWVVVSIEDTGIGIAPEHLPFIFDRLW 442

Query: 169 DGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +       +A  +   +               L 
Sbjct: 443 RADRARTQRQEGSGLGLAIAKAIAQRHGGDITVRSKLGVGSCFQVYLP 490


>gi|220923418|ref|YP_002498720.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219948025|gb|ACL58417.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 662

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQL 52
           + K       +  + AL  L + I HD  + +  +  +L+LL     E         MQ 
Sbjct: 266 LEKTQAALFQAQKMEALGGLSAGIAHDFNNLLTVVLGNLDLLRRAPEERRARLIDNAMQA 325

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +          L F R        VD    +  ++ +++  +  D  + +    +   + 
Sbjct: 326 VEQGRKLTQQLLAFGRSQTLRPEVVDVTRLILGMDDMLKQSLRGDIGIVLDLAEDLWPIE 385

Query: 113 RERAKILLNLFM----------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + A++ + L                   +   VT    +       S+   G+    P+
Sbjct: 386 ADPAQLQIALINLAVNARDAMPNGGQFRIKTENVTTHDGEVAQSVAISVSDTGHGM-PPD 444

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +    +        +    V   A ++   +            +  L +
Sbjct: 445 VLARAFEPFFSTKEVGKGTGLGLPQVYGFAQQSNGSVRVTSEVGRGTTFTISLPR 499


>gi|218779891|ref|YP_002431209.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761275|gb|ACL03741.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 865

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 63/245 (25%), Gaps = 33/245 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           +         S  + A+  L   I HD  + +  I    E+L +             EV+
Sbjct: 482 LRLERQLR-QSHKMEAIGTLAGGIAHDFNNILSPIIGYTEMLRDTLKGDKAAVRDLSEVL 540

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +  R +       L F R +      V     + D+  +I   +    ++          
Sbjct: 541 KAARRAKELVSQILTFSRKSEEKPQLVALAPIVSDVLNLIRATLPATIQIHKDIDLSCGS 600

Query: 111 LSRERAKILLNLFMVAHASLPRGGKV-------------------TISVQDSKNENIFSL 151
           +  +  ++   +  +   +     +                      S          S+
Sbjct: 601 VMADSTQMHQVVMNLCTNAYQVMRQTGGVLEVTLKETQLKEKDLSPASSIQPGRYAWLSV 660

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +I +    +    +   +       +  +++  +  +       V 
Sbjct: 661 SDTGEGM-PPEIQERIFEPYFTTKPIGEGTGMGLAVAHAIVTKHRGEIRVQSSPGRGTVF 719

Query: 210 SALLE 214
              + 
Sbjct: 720 DVFIP 724


>gi|78357413|ref|YP_388862.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219818|gb|ABB39167.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 795

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
            K +   L  +  + A+  L   I HD  + +G +    E+  +   E   MQ       
Sbjct: 412 RKQLEAQLRQAQKMEAIGTLAGGIAHDFNNILGVMMGYTEMSMDETTEGSAMQRRLDAVL 471

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              R +       L F R        ++ +  + +  +++   +  +  + +        
Sbjct: 472 SAGRRARDLIHQILTFSRHEEPSRHPLNLVSPVKETVKLLRASLPANIAIDLRTDTVPPV 531

Query: 111 LSR--ERAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKI 153
            +   +  ++++NL   A  ++                   +       +       +  
Sbjct: 532 NANLSQIQQVVMNLCANAAHAMRGPGGNLLLALDSTLLTAEEARPLSVPAGTYVRLRVSD 591

Query: 154 NGNLARFPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G+        +            +   +    V  +   +   +    +       + L
Sbjct: 592 TGHGIDPQILHSIFDPFFTTKKPDEGTGMGLALVHGIITAHGGTVSVSSVPGQGTDFTIL 651

Query: 213 LE 214
           L 
Sbjct: 652 LP 653


>gi|116750937|ref|YP_847624.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700001|gb|ABK19189.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
          Length = 757

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 73/233 (31%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSA 60
           +     +  ++ + +L   I HD  + + AI  ++ L          + ++    +S  A
Sbjct: 371 EEEHLKIEKLESLGILAGGIAHDFNNILTAILGNISLAKIYARDKVRKRLEEAERASAKA 430

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---- 116
               + +         V   + L ++ +    F      V+  ++        +      
Sbjct: 431 RDLTQQLLSFAKAGAPVKRTLSLAELIRESASFGLSGSNVRCEFSIPDGLWLVDVDEGQI 490

Query: 117 -KILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGNLARFP 161
            +++ NL + A  ++P GG + +S ++                     S++ +G+     
Sbjct: 491 SRVITNLVINADQAMPEGGTIEVSAENAAFRTAENARLPLRPGKYVKISVRDHGDGI-PG 549

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I D    +      +    V  +  ++   +  E            L 
Sbjct: 550 EHLAKIFDPYFSTKEKGTGLGLATVYSIVSKHGGCVDVESRPGIGSTFHFYLP 602


>gi|330685290|gb|EGG96951.1| sensor protein kinase WalK [Staphylococcus epidermidis VCU121]
          Length = 608

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 67/219 (30%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ ++++ +E L+E       +  + + + R  +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTSMNSYIEALEEGAWKDDNLAPQFLSVTREETERMIRLVNDLLQLSK 438

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLNL 122
                D +        +  + I     +    T    ++ ++            ++  N+
Sbjct: 439 MDNESDQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPQQTIFAEIDPDKMTQVFDNV 498

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPE---KFTQIVDGN--VEST 175
              A        +V   V+ +   N  +++   NG      +    F +    +      
Sbjct: 499 ITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKVDKIFDRFYRVDKARTRK 558

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   +  R+    ++     +   L 
Sbjct: 559 MGGTGLGLAISKEIVEAHNGRIWANSVESQGTSIFITLP 597


>gi|299534473|ref|ZP_07047806.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298730101|gb|EFI70643.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 438

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 53/215 (24%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           S I H++ +P+  I    ++L +         + + +I   +      +K +        
Sbjct: 213 SSIAHELRTPLTFIKGYTDILAKRDLTEQDRQKYLAIIIEETNRLSRLIKDLFDLAKMDE 272

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                   Y         + +          +   V+               +IL+NL  
Sbjct: 273 NSFVIEKHYLHLEPFFTSIEEKLSPAFQDKGIYLVVRCDSGLTLYADEARLEQILINLLN 332

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
            A      G   T++V+        +++  G      +                  +   
Sbjct: 333 NALIYCAPGDMTTVTVKKDSGTLSITVEDTGKGIPKKDLPYIFDRFYRVEKSRSRALGGS 392

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  L   +   +      +         +
Sbjct: 393 GLGLAIVKELVQAHGGEIKVRSEINKGTTFELSFK 427


>gi|229068990|ref|ZP_04202283.1| hypothetical protein bcere0025_11980 [Bacillus cereus F65185]
 gi|228714102|gb|EEL65984.1| hypothetical protein bcere0025_11980 [Bacillus cereus F65185]
          Length = 402

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 67/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +   + 
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIVG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|154483202|ref|ZP_02025650.1| hypothetical protein EUBVEN_00903 [Eubacterium ventriosum ATCC
           27560]
 gi|149736010|gb|EDM51896.1| hypothetical protein EUBVEN_00903 [Eubacterium ventriosum ATCC
           27560]
          Length = 899

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +   L    +    D   QL      
Sbjct: 658 KQEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNGDSFDNDTKKQLYMYIYD 717

Query: 59  SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +                  + D +  +        +  + +  + V    E 
Sbjct: 718 DSMWLINLVENLLAVTRIEEGRLNLRITEDLMDDVITEALHHINRKSEEHHISVESKEEF 777

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     ++++N+   A    P+   + I  +    + I S+  +GN     E   
Sbjct: 778 LLAKMDAKLIVQVIINIVDNAIKYTPKNSHIVIRTEKQGKQAIVSISDDGNGI-ADEIKP 836

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           +  S  +       + + +   L       H  V +  L 
Sbjct: 837 RIFDMFYSGANQIADSRRSLGLGLSLCKSIINAHGGELTVSDNLPHGTVFTFTLP 891


>gi|158521661|ref|YP_001529531.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510487|gb|ABW67454.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 612

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 66/236 (27%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSS 57
           +A+       S    A+  + + + H+I +P+ ++   LE + +   +  E  +  R++ 
Sbjct: 370 LAETRLIAERSEKFAAMGRMGAAVAHEIRTPLTSLKLFLESVQDLARLSAEDQEDFRIAM 429

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKI 109
                    +     +    + +    D+          +       +  + V       
Sbjct: 430 EQIQRMEGTINRFLDFARPREPVFSEIDMADLVASVVMMIRPLANRQECALHVHTEENLP 489

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLA 158
            ++ +R  +   L      A  + P  G VT+S                   +K  G+  
Sbjct: 490 PVTGDRPLLSETLINLIVNALEATPDHGTVTVSATTDHFEKEGVRTPCVRIDVKDTGHGI 549

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 T I +    +      +    V+     +   L            S  L 
Sbjct: 550 AEDRVNT-IFEPFFTTKASGTGLGLPLVLHTVESHGGSLRITSKLKEGTTFSVFLP 604


>gi|116326605|ref|YP_796526.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|3687664|gb|AAC62214.1| LcoS [Lactococcus lactis]
 gi|76574959|gb|ABA47428.1| histidine kinase sensor protein [Lactococcus lactis]
 gi|116108973|gb|ABJ74095.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 464

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +AK+I      +D          S + H++ +P+  I    ++ +        + + +++
Sbjct: 225 LAKSIEDLAEKLDFMKRERNEFLSSVAHELRTPLTFIKGYADIANRSTTSLEDKTQYLRI 284

Query: 53  IRLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           IR  S      ++ +                     + +  +      +     ++  + 
Sbjct: 285 IREESRHLTQLMEDLMNLAQLEENGFKVEKHQVLIQELINEVVSKVSGVFSEKRINFLIS 344

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++L+NL M A+        + ++    K      +   G      
Sbjct: 345 GEGNFYANIDFMRIEQVLVNLLMNAYKYSADESDIKLAFIPEKENFKIVISDKGEGIPEQ 404

Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +    +     T     +    V  +  ++  +++ E I +        L 
Sbjct: 405 DLPYIFERFYRVDKSRTRTTGGVGLGLAIVQDIVKKHNGKIIVESIQNQGTTFIIELP 462


>gi|325289763|ref|YP_004265944.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324965164|gb|ADY55943.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 502

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 61/237 (25%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------- 48
           M + +  +  +            +   H++ +P+ +IH  LE+L    +           
Sbjct: 260 MLERLELSFKAEQEAKEQMRRFVADASHELRTPLTSIHGFLEVLLRGAVNQPDKLEKSLK 319

Query: 49  -VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----VDKRVQVS 103
            ++             L+  +L       +        I+++              + + 
Sbjct: 320 SMLTESERMKKLIQDLLQLAKLDRTPQIELKEGRLDNLIKEMEPQLKMLAGLRKVTINLG 379

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA---R 159
                     +  +++LNLF  A               +D+ N     +K NG       
Sbjct: 380 SALRCRFDEDKIKQVILNLFQNAVQHTEAEEGRIELSLKDTANGVEIEVKDNGPGIAAKH 439

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P  F +    +           +       +   +   +    ++         L 
Sbjct: 440 LPYLFDRFYRCDSSRTRKHGGSGLGLSITRSIVELHGGTIKVATVEGKGTAFQVGLP 496


>gi|294500033|ref|YP_003563733.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294349970|gb|ADE70299.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 378

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 73/223 (32%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAI 61
           +     L  + LV  L + + H+I +P+ ++   ++ L +E    +   +++        
Sbjct: 154 EEKILQLDKLALVGQLAAGLAHEIRNPMQSVRGFIQFLFNENEQAEPFQKIVLDELDRMN 213

Query: 62  IRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSR 113
             +    L    T         V+ +       +       V+  V++            
Sbjct: 214 ELINNFLLVTQPTAPKKEIVSIVEVIHDTVAFLKSEAALYNVEMNVRIEGAIPLVSIDPA 273

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +  ++ +NL   A  ++ +  +  ++  +++ +   +  ++  G+               
Sbjct: 274 QMRQVFMNLLKNAIEAMEKKKRGEVNLIIKEWEGWALIDIQDTGSGIPLSIINKVGNPFF 333

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       + +E+  +L  E  ++   V++  L 
Sbjct: 334 STKDGTGMGLGLSICKTIINEHNGKLAIESDEN-GTVVTVKLP 375


>gi|196247851|ref|ZP_03146553.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|196212635|gb|EDY07392.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 425

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 66/206 (32%), Gaps = 10/206 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L + I H+I +P+ ++   ++++ E           ++  +   +      L   +    
Sbjct: 211 LAAGIAHEIRNPLTSLKGFMQVMQETREVNDDHVRIMLSELGRVNQIVSELLVLAKPQSP 270

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                     +  +  +I     ++         +          +  ++LLN+   A  
Sbjct: 271 DYRPFLLEEAISYVINLIGHEATLNNVSISVRNNAPKACVYGDQNQIVQVLLNVMKNAIE 330

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG + + V ++++     +   G      E+  +I +           +     + 
Sbjct: 331 AMPNGGNLHVHVSEAESLIRLDIADTGIGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 389

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +  E+K  +  E       V+     
Sbjct: 390 IVQEHKGTMQIESEVGKGTVVHLTFP 415


>gi|138894544|ref|YP_001124997.1| sporulation kinase A [Geobacillus thermodenitrificans NG80-2]
 gi|134266057|gb|ABO66252.1| Sporulation kinase A [Geobacillus thermodenitrificans NG80-2]
          Length = 418

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 66/206 (32%), Gaps = 10/206 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L + I H+I +P+ ++   ++++ E           ++  +   +      L   +    
Sbjct: 204 LAAGIAHEIRNPLTSLKGFMQVMQETREVNDDHVRIMLSELGRVNQIVSELLVLAKPQSP 263

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                     +  +  +I     ++         +          +  ++LLN+   A  
Sbjct: 264 DYRPFLLEEAISYVINLIGHEATLNNVSISVRNNAPKACVYGDQNQIVQVLLNVMKNAIE 323

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG + + V ++++     +   G      E+  +I +           +     + 
Sbjct: 324 AMPNGGNLHVHVSEAESLIRLDIADTGIGI-SKERLQKIGEPFFTLKEKGMGLGLTTSMK 382

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +  E+K  +  E       V+     
Sbjct: 383 IVQEHKGTMQIESEVGKGTVVHLTFP 408


>gi|116624978|ref|YP_827134.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116228140|gb|ABJ86849.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 613

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 64/231 (27%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           M         +  L +L  L   + HD  + +  +  +  L+ E             E+M
Sbjct: 235 MELEEQLR-QTQKLESLGVLAGGMAHDFNNLLTGVMGNASLIAEELGPESSAAPRLSEIM 293

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++      L +          +D    +  I  +I   I    +++ +       
Sbjct: 294 HASERAAQLVRQMLAYAGKGRFVMQHLDISEQIAGIAPLIRTSITPSVQLEFNLAENLPA 353

Query: 111 LSRERAKILLNLFMV-------AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +  + ++I   +  +         +        +     S+ + +  +K  G       +
Sbjct: 354 VECDASQIQQLIMNLATNAGEAIESHGTVTITTSTHRTGSERQVVIEVKDTGCGMDETTR 413

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +      +    V+ +   +   +  E         +  L 
Sbjct: 414 -ARIFDPFFTTKFTGRGLGLAAVLGIIRSHNGSISVESTPGRGSTFTVALP 463


>gi|315646921|ref|ZP_07900036.1| sensor histidine kinase [Paenibacillus vortex V453]
 gi|315277851|gb|EFU41175.1| sensor histidine kinase [Paenibacillus vortex V453]
          Length = 486

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49
           +  +I   L   +    L S I HD+ +PI +I   +E + +   +              
Sbjct: 245 LQASIQLRLQDEENRKELISNISHDLRTPITSIKGYIEGIRDGVADTPEKMDKYVNIIYA 304

Query: 50  --MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV 102
             + L +L     +      +        VD +  L D        + E  I ++   + 
Sbjct: 305 KAVDLDKLVGELFLYSKLDSKQVPFMFEPVDIIGFLDDCIDELQFILDEKGIQLEWMERT 364

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARF- 160
           +   E I    +  + +LN+   A   + +  K                ++ NG      
Sbjct: 365 ADRVEVIADLEKLKRTVLNIIGNAQNFMDKQPKTIRVSIRISPEWVTVEIQDNGMGIPRD 424

Query: 161 --PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +      +  S+     +       +   +   +  E        L   L++
Sbjct: 425 AIPHIFERFYRVEPSRNSSTGGSGLGLAIASQIIEGHGGAIWAESELGVGTSLFFTLKR 483


>gi|229095926|ref|ZP_04226903.1| hypothetical protein bcere0020_11760 [Bacillus cereus Rock3-29]
 gi|229102038|ref|ZP_04232751.1| hypothetical protein bcere0019_12030 [Bacillus cereus Rock3-28]
 gi|229114877|ref|ZP_04244290.1| hypothetical protein bcere0017_11740 [Bacillus cereus Rock1-3]
 gi|228668569|gb|EEL23998.1| hypothetical protein bcere0017_11740 [Bacillus cereus Rock1-3]
 gi|228681425|gb|EEL35589.1| hypothetical protein bcere0019_12030 [Bacillus cereus Rock3-28]
 gi|228687497|gb|EEL41398.1| hypothetical protein bcere0020_11760 [Bacillus cereus Rock3-29]
          Length = 402

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|315498970|ref|YP_004087774.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
 gi|315416982|gb|ADU13623.1| multi-sensor signal transduction histidine kinase [Asticcacaulis
           excentricus CB 48]
          Length = 864

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 72/238 (30%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---------------- 44
           MAK      +     +   + + H++ +P+ AI+   E++                    
Sbjct: 604 MAKIRAEQANHAK--SEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHARYKEYAGDI 661

Query: 45  --IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                 ++ LI      + I    M L F      + +     + +   +   +  RV +
Sbjct: 662 LSSGQHLLALINDILDMSKIEAGKMTLRFEPVSVEEVVDDTLRLVRQRAEKAGLKMRVHL 721

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +     R   +ILLN+   A    P GG +T+S   + +     +   G      +
Sbjct: 722 PQLPDIQADYRALKQILLNILTNAIKFTPSGGTITVSAVPTDSFMHLYVADTGIGIAPKD 781

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++             T +   +       L   +  RL  +        +S +L 
Sbjct: 782 -MERLARPFEQIENQFSRTKEGTGLGLALTKSLIEMHSGRLEVDSTVGQGTTVSVILP 838


>gi|315644820|ref|ZP_07897949.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315279762|gb|EFU43063.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 535

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 9/222 (4%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQL 52
           M +      ++  L     +   I H++ +P+  +   L+L      L    +    ++ 
Sbjct: 313 MKRTEEVLRNTEKLVFAGQVAVSIAHEVRNPLTTVKGMLQLANKDARLRHYDLIMSELER 372

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
             L     +I  K            + L  +  +  +  +   ++           +   
Sbjct: 373 ANLMVGEFMILGKPQAAVLKQEDCGEILEEVLHLFAIQAELSGIEMTQCFVQNAVILCDR 432

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++ LN+   A  +LP GG + I +   +         NG+     E   +I +   
Sbjct: 433 NQIKQVFLNILKNAMEALPYGGNIHIRLDVQEGYQRVIFTDNGSGM-TEEVLQRIGEPFH 491

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  D + +    V  +   +  R++    ++    +   L 
Sbjct: 492 TTKPDGNGLGIMIVHRIMESHHGRIVIRSEEERGTSVEIGLP 533


>gi|325964129|ref|YP_004242035.1| PAS domain S-box [Arthrobacter phenanthrenivorans Sphe3]
 gi|323470216|gb|ADX73901.1| PAS domain S-box [Arthrobacter phenanthrenivorans Sphe3]
          Length = 556

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 61/224 (27%), Gaps = 21/224 (9%)

Query: 12  MDLVA--LLCSRICHDIISPIGAIHNSLEL-LDE-----VGIEDEVMQLIRLSSMSAIIR 63
             L A   L S + H+  SP+ +I  +++L LD+          + + +++ ++      
Sbjct: 325 EALAANQELVSNVSHEFKSPLNSIIGNIDLVLDDVGADLPPQVAQRLLVVQRNAERLAAL 384

Query: 64  LKFMRLA-----FGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRER 115
           +  +  +       +    D    +                     V             
Sbjct: 385 VSDLTASASTALNVHPKRTDLASLVETSLGSALAEAERAHIQLNTDVPSPLWAYADPLRI 444

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            + L NL   A    P GG V+IS +  K+    S+   G      +             
Sbjct: 445 GQALDNLVSNAIKYSPDGGTVSISARSGKDWVQLSVSDTGMGMSREDTARVFKRFFRSEA 504

Query: 176 -----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I    +      ++   +   +  E         +  L 
Sbjct: 505 ARKAAISGAGLGLSITKMIVEGHGGTITCESGQGKGSTFTLTLP 548


>gi|312144338|ref|YP_003995784.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904989|gb|ADQ15430.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 592

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 22/217 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
             + + H++ +P+ +I   L+ L E     +    + +++           +      + 
Sbjct: 373 FVANVSHELRTPLTSILGYLDTLLESDIEDQKTKEKFLKIIKEETNRLSLLITDLLNLSK 432

Query: 76  SVDSLIGLGDIEQVIEDFIAVD-------------KRVQVSWTGEKIDLSRERAKILLNL 122
                  L   + +                              +   +  +  ++L+NL
Sbjct: 433 IESQSFELYPGDFLKTFQKVYHLLEKNAQLKDININLEIEDDLPQVYMVREQVEQVLINL 492

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
              A      GG + ISVQ   ++  F ++ NG      E   +I +            +
Sbjct: 493 IDNAIKYSSSGGTINISVQKKSDKLYFEIQDNGIGIPVDE-QERIFERFYRVDKARSREL 551

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               I    V  +  ++   +  E         S  L
Sbjct: 552 GGTGIGLSIVRNIIKQHGSEIKVESRVGEGSKFSFYL 588


>gi|262173923|ref|ZP_06041600.1| sensor protein TorS [Vibrio mimicus MB-451]
 gi|261891281|gb|EEY37268.1| sensor protein TorS [Vibrio mimicus MB-451]
          Length = 968

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL E  +       +++ + S  
Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +     Y+      + +      +   +     +                    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                      ++L NL         +    + IS         F+++ +G      +  
Sbjct: 577 RYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPEGQGIHFAVEDSGIGIAEQDQA 636

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F                +       L       L            S  L 
Sbjct: 637 SLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSSQLGQGSCFSFTLP 689


>gi|229031295|ref|ZP_04187301.1| hypothetical protein bcere0028_33480 [Bacillus cereus AH1271]
 gi|228730053|gb|EEL81027.1| hypothetical protein bcere0028_33480 [Bacillus cereus AH1271]
          Length = 526

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
           + +       S  L     L + I H+I +P+ ++   L LL     E       + L  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEENKWYVDVMLSE 340

Query: 55  LSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +S M +I                           +  I                 +  + 
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIKTCNIQALIEEVVTFILPTAIMHSVHIIMDHFDYKHDI 400

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG V I  +  ++   +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNVYIQTKPFEDAFILIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506


>gi|224476604|ref|YP_002634210.1| respiratory response protein SrrB [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421211|emb|CAL28025.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 584

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 60/218 (27%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E +      E     + + ++   +      +  +       
Sbjct: 362 ANVSHELRTPIALLQGYTESIVDGVVSEPDEIRDSLSIVLDETQRLNRLVNELLNVARMD 421

Query: 74  ----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERAKILLNL 122
               + + +       +E++   +    + +Q+                +    ++L NL
Sbjct: 422 AEGLSVNKEVQPIDPLLERMQMKYRQQAEDLQIDINLAPNTEGQLWYYDTDRMEQVLTNL 481

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID-- 177
              A      G  + IS  +S   +I  +   G+          F +    +        
Sbjct: 482 VDNASRYTSPGDAIKISTSESDKYDILYVTDTGSGIAPEHIDLVFDRFYKVDASRKRGKE 541

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   ++       +  +            L K
Sbjct: 542 GTGLGLFICRMIIEAQGGTIDLKSRLGEGTTFIIKLPK 579


>gi|189423648|ref|YP_001950825.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419907|gb|ACD94305.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 667

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 59/244 (24%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVA-----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           A+       S    A        + + H+I +P+  +  + +LL    +  E    +   
Sbjct: 273 AREELLQAKSEAEAANTAKSEFLANMSHEIRTPMSGLIGNAQLLRLTQLNAEQTGYLTNI 332

Query: 57  SMSAIIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
              A   +                  +  A     S  + +      ++    I +   +
Sbjct: 333 ETDAKNLMSLINDVLDISKIEAGKLELESAPFSLRSCVAQLLKSQEARIAAKAIVLTHEI 392

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGN 156
                           +IL NL   A     +G            D K    FS+   G 
Sbjct: 393 AADLPDSLFGDQLRLKQILYNLVGNAIKFTAKGEIRVKVELLERHDDKARFCFSVTDTGI 452

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               PE   +I    +              +       L  +    +  E  +      S
Sbjct: 453 GI-RPEAREKIFAPFIQADASVTRRFGGTGLGLSICSRLVQQMGGGITVESEEGKGSTFS 511

Query: 211 ALLE 214
             L 
Sbjct: 512 VTLP 515


>gi|326628479|gb|EGE34822.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 948

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|323493551|ref|ZP_08098673.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
 gi|323312374|gb|EGA65516.1| hypothetical protein VIBR0546_14560 [Vibrio brasiliensis LMG 20546]
          Length = 878

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 62/234 (26%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S     ++  + + H+I +P+  I    E+L +  +     +++     S+ 
Sbjct: 377 AKENAEAASQAK--SVFLANMSHEIRTPLNGIIGMAEILSDSHLSSSQKEILSDIDTSSH 434

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWT 105
                              + L+       + +    ++         V+ +V    +  
Sbjct: 435 ALLVLINDILDLSKIESGNLILSVHTVCLREMVFDTVNMLTSKALKQDVELKVDFADNLP 494

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L+NL   A     +G      + +   + +  +  +G      +   
Sbjct: 495 DNIEIDDFRFKQVLMNLLSNAVKFTQQGSVSVELLIE-GQQLVCHVADSGVGISPEKLTE 553

Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    G++        +       L    +  +            +  + 
Sbjct: 554 IFKPFTQEDGSITRRFGGTGLGLAICNQLIEIMQGTISVSSTPGVGSRFTVSVP 607


>gi|254000326|ref|YP_003052389.1| histidine kinase [Methylovorus sp. SIP3-4]
 gi|253987005|gb|ACT51862.1| histidine kinase [Methylovorus sp. SIP3-4]
          Length = 559

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
           + ++      +  L     + + + H++ +P+G + +S + LL E  + +E  ++     
Sbjct: 328 LERSKENLTRAAKLAVVGEMAAAMSHEVRTPLGILRSSAQVLLREPTLSEEGREVCGFII 387

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTGE 107
                  K +                 D          + ++  +   +    Q+     
Sbjct: 388 SETERLNKLVSTLIDSARPRLPNFTPVDISQLCSQSAAMLRMQAEKKHIALETQLDAGLI 447

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I    +  ++LLNL + A   LP GG++ +    +      ++  NG      E+  Q+
Sbjct: 448 AICDPEQMTQVLLNLLLNAIQVLPEGGRIVLGSSTAGEHACITVSDNGPGI-PEEQREQV 506

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D           +    V  +   +   +              LL 
Sbjct: 507 FDPFFTKRSGGIGLGLSVVRQIVQAHHGSIRAITSTLGGAEFRILLP 553


>gi|153007209|ref|YP_001381534.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030782|gb|ABS28550.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. Fw109-5]
          Length = 641

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 61/239 (25%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58
           + +N+      M+ V  L   + HD  + +  I    ELL       +    +       
Sbjct: 258 LEQNLRQA-QKMEAVGRLAGGVAHDFSNVLAVILGYSELLMRDLPAGDARSRESAEGIVE 316

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +A          L   R        +     + D+ +++   I     +          +
Sbjct: 317 AAHRAAGVTRQLLTLSRKKLLRPEVLSLNKVVQDLGKLLARAIGERIELTTRLQDGLWPV 376

Query: 112 SRERAKILLNLFM---VAHASLPR-------------GGKVTISVQDSKNENIFSLKING 155
             +  ++   L      A  ++P                        +      +++  G
Sbjct: 377 LADADQLAQVLLNLAVNARDAMPDGGPLAIETANVELSEPPRDLPIPAGRYVSLAVRDGG 436

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 E  ++I D    +      +    V  +  +    +  +         +A L 
Sbjct: 437 CGM-TEEVRSRIFDPFFTTKETGTGLGLATVYGIVRQAGGAIRVDSEPGQGATFTAFLP 494


>gi|119899005|ref|YP_934218.1| putative sensory box sensor histidine kinase [Azoarcus sp. BH72]
 gi|119671418|emb|CAL95331.1| putative sensory box sensor histidine kinase [Azoarcus sp. BH72]
          Length = 393

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 62/234 (26%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMD---LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----Q 51
            +     L++     L A+  + + + H + +P+ A       L +  +          +
Sbjct: 144 TETHRMRLAAERNERLAAMGEMVAGLAHQLRTPLAAALLYTGNLRQPELGAPERAKVADR 203

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I        +    +  A G +           + ++      + +  Q+ ++      
Sbjct: 204 AIERLRYLERLIRDMLLFARGDSLGRQHFGVCDLVAELTHTLEPLARARQIEFSSACSCG 263

Query: 112 ----SRERAKILLNLFMVAHASLPRG-------GKVTISVQDSKNENIFSLKINGNLARF 160
                 +R  +   L  +   ++             + +      +  F +  +G     
Sbjct: 264 ELSLYGDRKALGGALTNLLENAIQATEAGGTVSCSASCAQGADGEQVRFVVSDSGRGI-P 322

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ +    +  +   +       +A  +   +            +  L 
Sbjct: 323 AELQERLFEPFFTTRAEGTGLGLAIARGVARGHGGDISLSSAPGQGSTFTLNLP 376


>gi|120601142|ref|YP_965542.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris DP4]
 gi|120561371|gb|ABM27115.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris DP4]
          Length = 486

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       +    L +L  L S I H + +P+  I  S ++L       +  +   +++ 
Sbjct: 250 LENRQNQLVQEKKLASLGVLTSGIAHQLNNPLNNISTSCQILQEDIGSGDAELHARMLRN 309

Query: 53  IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTG 106
           I    + +       L+F R              +     ++   +     +   V    
Sbjct: 310 IHQEVLRSRDIVKGLLEFAREKDFSLVPQRLADVVERAVSLVSSEVPAGVTLSASVPPDM 369

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163
                ++   + L+NL + A  ++P          +    ++     ++  G     PE 
Sbjct: 370 VVPLDAQHMQEALINLLINAIQAIPAPPGTITVSATRLPGRDMVALRVEDTGTGI-PPEH 428

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +I D             +    V  +  ++  R+  E            L
Sbjct: 429 LGRIFDPFFTLKAVGKGTGLGLSIVFGVVKKHGGRVTVESEPGKGTAFIIHL 480


>gi|77919621|ref|YP_357436.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77545704|gb|ABA89266.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 613

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 66/230 (28%), Gaps = 18/230 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +++       +L   + S + H++ +P+ AI    + L    D    + + + +I+  S 
Sbjct: 381 RDVSERQRIEELKDDMLSSVSHEMRTPLTAIMGFTDYLLKSNDRPERQKDYLSIIQQQSE 440

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108
                ++              G    V+ L  L  +  +       D+            
Sbjct: 441 RLKELVENHLNLQRLRAGHGVGAIHPVEVLPLLHGVSNMFSSARGRDRIRIQCPEDLPPV 500

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                +  + L NL   A        ++ +  + + +  +  +K  G           F 
Sbjct: 501 RGDENQLYRALYNLLSNAIKYSSEDQEILLGARRADDAAVLFVKDQGVGIPNEHQATIFD 560

Query: 166 QIVD-GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +  +    +    V  +   +  R+  + +          L 
Sbjct: 561 RFFRVPAGDHGMRGSGLGLSLVQEIIKAHNGRIWLDSVPGQGSCFYLKLP 610


>gi|83643679|ref|YP_432114.1| PAS/PAC domain-containing protein [Hahella chejuensis KCTC 2396]
 gi|83631722|gb|ABC27689.1| FOG: PAS/PAC domain [Hahella chejuensis KCTC 2396]
          Length = 1437

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 27/239 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +      ++    +   + + H+I +P+ AI   + LL    +E+     +  +  SA
Sbjct: 774  LREAKAMADNASKAKSEFLANMSHEIRTPMNAILGMVNLLKRTNLEERQQDYVHKAESSA 833

Query: 61   IIRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
               L  +                         +   +G+     + +  + V   +    
Sbjct: 834  RALLGILNDILDFSKIEAGKLTLDVEPCSLDKLLQDVGVIITANLGDKPLEVLFDIDPKI 893

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
                        +IL+NL   A     +G         S+ E      FS++  G     
Sbjct: 894  PDWLELDGLRLQQILINLAGNAVKFTEQGEVEITVRLKSEEEDRLVLSFSVRDTGIGI-S 952

Query: 161  PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+  +I +G  +             +       L       +  E  +    V    +
Sbjct: 953  AEQLQRIFEGFTQAEASTARRFGGAGLGLAICRRLVRLMGGEIAAESEEGEGSVFRFSI 1011


>gi|51246743|ref|YP_066627.1| Ntr two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50877780|emb|CAG37620.1| related to two-component system sensor histidine kinase (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 499

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 65/222 (29%), Gaps = 17/222 (7%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLK 65
            +  LV    + + + H+I SP+G + ++ ELL +   +       L  +          
Sbjct: 277 QAERLVHLGTMVATVSHEIKSPLGIVRSTAELLQKRIKKIAPGNEMLAGIIIDETTRLND 336

Query: 66  FMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
            +     +         +  +          V     A   ++   +  +      +   
Sbjct: 337 IVIEFLDFARPQKMNFVVATVDEIITKVLTFVTPQLKAQGVKLVTDFAPDLRATMLDQDA 396

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             + LLN+ M A  ++  GG++ I+  +      +  ++  G      E   QI +    
Sbjct: 397 FYRALLNIVMNALQAMEEGGELQITTANLDDGAVLLRVRDTGRGI-SEENQAQIFNPFFT 455

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +       +   +   +            +  L +
Sbjct: 456 DRHKGTGLGLAITSNIIETHGGTVTVTSEPGLGSCFAIKLPR 497


>gi|226943192|ref|YP_002798265.1| sensory histidine protein kinase [Azotobacter vinelandii DJ]
 gi|226718119|gb|ACO77290.1| sensory histidine protein kinase [Azotobacter vinelandii DJ]
          Length = 488

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57
           A+      ++  L + + S + HD+ +P+  +    + L         +  ++  +R  +
Sbjct: 245 ARETELRRAAESLRSSILSALSHDLRTPLTVMVGLADTLALGKASPERQKNMLNALRNQA 304

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTGEKID 110
           +S    +  +            L                       D+ + +        
Sbjct: 305 LSINQLVTNLLDMARLRSGNIELNEAWQPIDEVIGATLRQVRTQWKDREITLDIPLGLPP 364

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164
           L  +     ++L NL   A    P    V + V+   +     +   G         E F
Sbjct: 365 LCFDAVLVERVLWNLLENAIKYSPADTPVELVVRRFGDWLDVMVCDWGPGLPPEGAEELF 424

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                G  ES I    +       +A  +  ++L E            L 
Sbjct: 425 GLFRRGQTESNIPGVGLGLAIARSIAEAHGGQVLAENRMGGGACFRLRLP 474


>gi|325280822|ref|YP_004253364.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
 gi|324312631|gb|ADY33184.1| multi-sensor signal transduction histidine kinase [Odoribacter
           splanchnicus DSM 20712]
          Length = 936

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 66/228 (28%), Gaps = 20/228 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK        +    L  + + H+I +P+ AI    +LL   D+       +++++ ++ 
Sbjct: 695 AKERAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSDLLAESDDREERFGYLKIVQENNE 752

Query: 59  SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +  +  +          F +     ++  L +           + +V++ +  +    
Sbjct: 753 LLLQLISDILDLSKIEAGTFKFINDRVNVYQLCNEIVRSYSIKIKNHQVKLIFDEQSPVY 812

Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L N    A     +G           +E    +   G      EK   
Sbjct: 813 YITSDKNRVIQVLSNFINNALKFTSQGTITLGYELLPNHELKLYVCDTGQGI-AEEKQKV 871

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I D  V   + +    +       L  +   ++     +         
Sbjct: 872 IFDRFVKLNTFVQGTGLGLSICKSLVKQMGGQIGVNSKEGEGSCFWFT 919


>gi|297569826|ref|YP_003691170.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925741|gb|ADH86551.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 489

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 74/234 (31%), Gaps = 21/234 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
            + +   L  S  + A+  L + + H++ +P+  +    + +       +      E+ Q
Sbjct: 256 QRQLEERLRQSEKMAAIGGLAAGVAHELGTPLSLVAGKAQRMLRRQQSPENAAAFQEIRQ 315

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +   S      L F R        VD  I       QV ++  A   ++++  +     
Sbjct: 316 AVERMSHIVRQLLDFGRNNQPRRKLVDPEIIAGNAAAQVRDEAEAAGVKIKLEDSQPPPR 375

Query: 111 LSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEK 163
           L  +  ++   L  +   ++            V +       +  F ++ NG      E 
Sbjct: 376 LRLDPIRLEQALVNLLRNAIQACQAGGAASPLVRLRWFTDDQQAGFQVEDNGPGI-AKEL 434

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++++ +    +        +    V     ++   +  +  D      +  L K
Sbjct: 435 YSRLFEPFFTTKEVGRGTGLGLAVVHSAVQDHGGSITVDRSDSGGACFTIYLAK 488


>gi|254423157|ref|ZP_05036875.1| PAS fold family [Synechococcus sp. PCC 7335]
 gi|196190646|gb|EDX85610.1| PAS fold family [Synechococcus sp. PCC 7335]
          Length = 1125

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 65/216 (30%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ SP+  I    +LL    ++++  +L   S          +         +  
Sbjct: 763 AVVSHELRSPLNPILGWSQLLKRGTLDEKRTKLALASIERNAQLQVQLIGDLLDISRILR 822

Query: 80  LIGLGDIEQVI-----------EDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMV 125
              + D   V                  +K + +  T     +  +     +++ NL   
Sbjct: 823 NKLILDKAPVDLESIIFAALETVKQATAEKSIHIETTITPCTVVGDAVRLQQVVWNLLSN 882

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA-----RFPEKFTQIVDGNVESTIDSHD 180
           A    PR G +T++V    +E +  +   G         F  +  +  + +         
Sbjct: 883 AVKFTPRDGSITVTVTADVSEVVIEVSDTGKGIAADFLPFVFEHFRQENYSTTRKFGGLG 942

Query: 181 IQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215
           +    V  +   +   +      ++     S  L +
Sbjct: 943 LGLAIVRQIVDLHDGTVAVRSPGENQGTTFSVCLPR 978


>gi|312138243|ref|YP_004005579.1| two component system sensor kinase phor [Rhodococcus equi 103S]
 gi|37813699|gb|AAR04622.1| PhoR [Rhodococcus equi]
 gi|311887582|emb|CBH46894.1| two component system sensor kinase PhoR [Rhodococcus equi 103S]
          Length = 464

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 57/216 (26%), Gaps = 18/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             +   H++ +P+  I    EL  +    D  M + R+   +  + L    L        
Sbjct: 248 FVADASHELRTPLATIRGFAELYRQGAAPDPEMVMSRIEDQAQRMGLLVEDLLLLARMDA 307

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------------DLSRERAKILLNLFM 124
                   ++ +     AV      S     +                    +++ NL  
Sbjct: 308 QRPFERHPVDLLAVAADAVHDARARSPQRRIMLEVLPGSAPAEVLGDDARLRQVVGNLVG 367

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSH 179
            A    P G  VT+ V     + +  +   G      +    F +    +     T    
Sbjct: 368 NALDHTPAGADVTVRVGTDGADAVVEVADTGPGLAEGDAARVFERFYRADASRTRTSGGS 427

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +   +  +    +       L +
Sbjct: 428 GLGLSIVAAIVAAHGGTVDVDSAPGNGATFRVRLPR 463


>gi|116748066|ref|YP_844753.1| histidine kinase [Syntrophobacter fumaroxidans MPOB]
 gi|116697130|gb|ABK16318.1| histidine kinase [Syntrophobacter fumaroxidans MPOB]
          Length = 313

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 61/234 (26%), Gaps = 26/234 (11%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----------------D 47
              + S  L A+  L S I H+I +P+  I   +E +     +                 
Sbjct: 72  RQLIQSQKLAAIGELSSGIAHEINNPLAIIGQEVEWMKHQAKDAGTGGGGNLAEFLDSLM 131

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTG 106
           E+ + +          L F R       + D    + D+ ++   + +    ++   +  
Sbjct: 132 EIGKQVDRCREITHKLLDFARKREPLIQTTDINKLVEDMVRLVEREAVKRKIKIDRDYQP 191

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPE 162
           +   +  +  ++   +  +   +                        S+   G      E
Sbjct: 192 DLPVVQTDAPQLRQVVLNLLINANAAIDAGGCITVATRVVDNGYVELSVSDTGCGI-PEE 250

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D    +        +       +  +   R+            +  L 
Sbjct: 251 NRDKIFDPFFTTKPPGKGTGLGLSICHGIITKLDGRITVASEVGKGTTFAVRLP 304


>gi|94985370|ref|YP_604734.1| response regulator receiver sensor signal transduction histidine
           kinase [Deinococcus geothermalis DSM 11300]
 gi|94555651|gb|ABF45565.1| response regulator receiver sensor signal transduction histidine
           kinase [Deinococcus geothermalis DSM 11300]
          Length = 416

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 56/215 (26%), Gaps = 2/215 (0%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +++L     +   H++ +P+ A+   L   +      + +Q  +  + + 
Sbjct: 176 LEEQAQQLEEALNLQKTFLAETSHELRTPLTALLGYLRRAEREVGGSQTLQDAQRVAENM 235

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              +  +             +   ++  ++            +   E I       ++ +
Sbjct: 236 TRLVNDLLQLSRGELVQGIEMHFVNLGNLVRQVGRDYGVKVKAPDLEIIGDPGRLTQVFV 295

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH- 179
           NL   A         V++ V         ++  +G          +I D           
Sbjct: 296 NLVSNAIRVCGTPELVSLEVWQEGRHACAAVIDHGPGI-PDHIKPRIFDKFYRGKEAGSA 354

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       + H +   +               L 
Sbjct: 355 GLGLTIAQQVVHTHGGTIEVLDTPGGGATFRVCLP 389


>gi|332798940|ref|YP_004460439.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
 gi|332696675|gb|AEE91132.1| multi-sensor signal transduction histidine kinase
           [Tepidanaerobacter sp. Re1]
          Length = 581

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 68/226 (30%), Gaps = 22/226 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKF 66
             +     + I H++ +P+ +I   +E L +            + +I+  +      +  
Sbjct: 355 EKVRTEFVANISHELKTPLTSIAGFVETLLDGAYKSQDHCKYFLGIIKQETDRMTRLINE 414

Query: 67  MRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116
           +                 VD +  +      +         +V +        +      
Sbjct: 415 LLYFSHIEKNGTEIIKKPVDMIEVIMKALSILQTAINEKKHKVNLKLPENIAHILSNEDS 474

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             +I++NL   A    P GG ++I V+++    + ++  NG      E    F +    +
Sbjct: 475 LLQIMINLLDNAIKYTPEGGTISIMVEETLENVLITVADNGIGIAEDELDRIFERFYRVD 534

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 I    +    V  L    +  +  E   +     +  + K
Sbjct: 535 RARSGEIGGTGLGLAMVKHLVKGLEGWIKVESELEKGTSFTVYIPK 580


>gi|313202284|ref|YP_004040942.1| histidine kinase [Methylovorus sp. MP688]
 gi|312441600|gb|ADQ85706.1| histidine kinase [Methylovorus sp. MP688]
          Length = 539

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
           + ++      +  L     + + + H++ +P+G + +S + LL E  + +E  ++     
Sbjct: 308 LERSKENLTRAAKLAVVGEMAAAMSHEVRTPLGILRSSAQVLLREPTLSEEGREVCGFII 367

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWTGE 107
                  K +                 D          + ++  +   +    Q+     
Sbjct: 368 SETERLNKLVSTLIDSARPRLPNFTPVDISQLCSQSAAMLRMQAEKKHIALETQLDAGLI 427

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I    +  ++LLNL + A   LP GG++ +    +      ++  NG      E+  Q+
Sbjct: 428 AICDPEQMTQVLLNLLLNAIQVLPEGGRIVLGSSTAGEHACITVSDNGPGI-PEEQREQV 486

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D           +    V  +   +   +              LL 
Sbjct: 487 FDPFFTKRSGGIGLGLSVVRQIVQAHHGNIRAGTSTLGGAEFRILLP 533


>gi|302342972|ref|YP_003807501.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
 gi|301639585|gb|ADK84907.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfarculus baarsii DSM 2075]
          Length = 517

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 66/228 (28%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57
           + +       S  + A+  L + + H+I +P+ A+   ++ L  +   +    +  +++ 
Sbjct: 284 LERLRREMAQSQHMAAVGRLAASVAHEIRNPLSALRGLVQFLVKDQPKDSRQAEYGKVAV 343

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGD-----------IEQVIEDFIAVDKRVQVSWTG 106
                  + +     Y    +      D           +                    
Sbjct: 344 EEVDRLERVVSGLLEYARPKEPRRVTMDLAESAESTLALMHDDPRAQGVRITVSAADDLP 403

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  +++LNL + A  +L   G + + ++      +     +G      +   +
Sbjct: 404 LIQADPDQIRQLILNLVVNALEALDGRGSLDLRLRREGKFLVLEAADDGPGL-PDDVGEE 462

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +      +       +A  +  +L     D     L+  L 
Sbjct: 463 LFNPFFSTKERGSGLGLAIARRIAQAHGGQLFAGRSDLGGASLTLRLP 510


>gi|269926605|ref|YP_003323228.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269790265|gb|ACZ42406.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 590

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 57/212 (26%), Gaps = 17/212 (8%)

Query: 20  SRICHDIISPIGAIHNSLE----LLDEVGIEDEVM----------QLIRLSSMSAIIRLK 65
           S I HD+ +P+  +    +    LL E G+E E            QL R+          
Sbjct: 364 SLISHDLRTPLSVVIGHSQILKTLLREKGLEREERNVDAIIGGGRQLTRMVENLLDRASL 423

Query: 66  FMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                      VD        IE+V          + +              ++L NL  
Sbjct: 424 EAGAVKLKLQRVDLESWLPDAIERVTVPANRSRVHLVIERGCTLDVDVDRIERVLGNLVT 483

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQ 182
            A         V +  + S N  I S+K  G   +  +                +   + 
Sbjct: 484 NALKYSAPETDVIVRAKVSSNNLIISVKDQGPGIKPEDVPKLFQKYYRTNRGRNEGLGLG 543

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Y   L+   +   +  E         S  L 
Sbjct: 544 LYISRLIVEAHGGHIWVESEPSKGSTFSFSLP 575


>gi|239617406|ref|YP_002940728.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239506237|gb|ACR79724.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 538

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 67/238 (28%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53
           M ++    +  ++ L +   + + H++ +P+ +I   + ++ +         + + + ++
Sbjct: 286 MEQD-NIKIKELERLKSEFLATMSHELRTPLNSIIGFVSMILQGISGDINEEQRKQLSMV 344

Query: 54  RLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             SS+  +  +                    +         + ++  +I           
Sbjct: 345 HSSSIHLLNLINDILDISKIEAGKMSFSKDRFNIKDVISEVVQNVSPLISKKEVKLITEI 404

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                E         +ILLNL   A     +G        D  ++   S+   G   +  
Sbjct: 405 PDEIPEVYSDKTRVFQILLNLVSNAIKFTEKGEIRIKCEVD-GDKLKISVSDTGKGIKEE 463

Query: 162 EKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        + + G+         +  Y    L       +  E         +  L 
Sbjct: 464 DMETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFTLP 521


>gi|99081104|ref|YP_613258.1| histidine kinase [Ruegeria sp. TM1040]
 gi|99037384|gb|ABF63996.1| histidine kinase [Ruegeria sp. TM1040]
          Length = 346

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 15/238 (6%), Positives = 57/238 (23%), Gaps = 27/238 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSM 58
           +I     +  +     + + H++ +P+ A+   +E L      D       ++++   + 
Sbjct: 108 DITDREQASQMRRDFVANVSHELRTPLTALMGFIETLRGAARNDAAARDRFLEIMEGEAS 167

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---------DKRVQVSWTGEKI 109
                +  +                                        ++ +      +
Sbjct: 168 RMNRLVGDLLSLNRVESEERVRPKERIDLLAHLQSTIKSLAPLAESGGTQLTLDAPAGAV 227

Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161
           ++  +  ++      +   +L  G          +              +  +G      
Sbjct: 228 EIPADPDQLQQVFTNLIENALKYGGDNVTVSLMALERDPALRCPAVRVQVIDDGPGIDPV 287

Query: 162 EKF---TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +      +    +    V  + + ++ RL  E         + +L 
Sbjct: 288 HLPRLTERFYRADNHRSRELGGTGLGLAIVKHIINRHRGRLRVESDLGKGATFTVILP 345


>gi|298241796|ref|ZP_06965603.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297554850|gb|EFH88714.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 474

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 69/244 (28%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMD-----------LVALLCSRICHDIISPIGAIHNSLELL-----DEVG 44
           +A+ I   L +++           L     +   H++ +P+  + +SLEL+      +  
Sbjct: 227 LARTINGMLHALEEAYQHVQQVNDLQRRFLADASHELRTPLTIMLSSLELMKKEEGRDPE 286

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +   ++ I   +         + L                I  +I +            
Sbjct: 287 FQTNALENISTEAERMARLTTRLLLLARTDARAPFAPQPLLIVDIISEAYRQGCPSHRKI 346

Query: 105 TGEKID-----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
             +               +    ++ L L   A    P GG+VTI  +  + E + ++  
Sbjct: 347 AMQCQGLETLEDAVVSGNADYLKQVFLILLENACKYTPDGGQVTIIGERKERELVVTVAD 406

Query: 154 NGNLARFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            G      +    F +       S      +     + +  ++   +  E         +
Sbjct: 407 TGIGIAQDDVPRLFERFYRAPNASIQPGMGLGLSIALSIVEQHNGTIKVESTLGQGSRFT 466

Query: 211 ALLE 214
             L 
Sbjct: 467 ISLP 470


>gi|292490729|ref|YP_003526168.1| ATP-binding region ATPase domain protein [Nitrosococcus halophilus
           Nc4]
 gi|291579324|gb|ADE13781.1| ATP-binding region ATPase domain protein [Nitrosococcus halophilus
           Nc4]
          Length = 555

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 60/226 (26%), Gaps = 20/226 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           +      + L +L  L + I H+I +P+GAI ++ +LL E       E  ++++I     
Sbjct: 319 LARQAQQLKLASLGRLTASIAHEIRNPLGAISHASQLLRESSTLNPSERRLLEIILNHCG 378

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKID 110
                +K +        S    + L        +       +  +               
Sbjct: 379 RVNDIIKNVLQLSRRKHSRLEALLLKPWLLHFLEEFCRTHGIDRAAVVLQVDPGKVRVHV 438

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFT 165
              +  +IL NL   A                        +    +   G      E   
Sbjct: 439 DPSQLHQILWNLCDNARRHSQDSDGSPCLQISVGIKANTGQVFLDVMDRGPGI-AKEAVD 497

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           +I +    +      +  Y    L+  N   L    +         
Sbjct: 498 KIFEPFFTTQGAGTGLGLYLARELSECNDASLEYYPVPGGGSCFRL 543


>gi|317129906|ref|YP_004096188.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474854|gb|ADU31457.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 592

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 61/220 (27%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+ ++    E L      +  + ++ + +I   S      +  +     
Sbjct: 367 FVANVSHELKTPVTSLKGFTETLLSGAVHDEQLREKFLTIISNESERLESLIHDLLELSK 426

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                    +        L  +  + +       +    +V         +    ++ +N
Sbjct: 427 IEGSQFVLNWDLVNIDVLLSDVFMMLESKAQNKNIHFSKEVIGDTVIEADAHRIKQVFIN 486

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A    P  G+V + V +     I  ++  G      E   +I +            
Sbjct: 487 IINNAIMYTPNDGEVHVKVIEKAETVIVEVQDTGIGISKKEIP-RIFERFYRVDRARSRN 545

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  L   ++  +  +             +K
Sbjct: 546 SGGTGLGLAIVKHLIEAHRATMSVDSEVGQGTTFKMEFKK 585


>gi|281356726|ref|ZP_06243217.1| integral membrane sensor signal transduction histidine kinase
           [Victivallis vadensis ATCC BAA-548]
 gi|281316853|gb|EFB00876.1| integral membrane sensor signal transduction histidine kinase
           [Victivallis vadensis ATCC BAA-548]
          Length = 532

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-----IRL 55
           M  N     + + +   +   + HD+ +P+  +    E+  E   E    +         
Sbjct: 300 MNSNTEKLFNELKM---VTDNVAHDLRTPLTRMRGLAEVTVEGPPELGRYRELAGVVADE 356

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
            S    I    + +    +        L D+ ++I     + + +               
Sbjct: 357 CSQMIQIINTMLEITKTESNIETPEAELLDLREMIARAAELFQPLAEDGDVRLAAELPDA 416

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                    +  +++ NL   A    P GG +T+S+   +N  +F +   G   R  +  
Sbjct: 417 AVPFRGDRIKLQRVVSNLIDNALKFTPPGGTITLSLTVKENTILFRVADTGCGIREEDLE 476

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +    +   T   + +    V  +   +   +            +  L K
Sbjct: 477 HIFERFFRSDASRTRPGNGLGLALVRAIVRAHHGEITAASKLGEGSCFTVELPK 530


>gi|115372454|ref|ZP_01459763.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
 gi|115370667|gb|EAU69593.1| two-component system sensory histidine kinase [Stigmatella
           aurantiaca DW4/3-1]
          Length = 498

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 70/245 (28%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEV 49
            +N      ++ L       +   + + H+  +P+ AI     +L      + +  +   
Sbjct: 250 EQNEKLRRQALQLEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGEMMPTQKRN 309

Query: 50  MQLIRLSSMSAII-RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--- 105
           +Q I  +    +    + + +     G +   +    + +++++ +A    +        
Sbjct: 310 LQRIDSNGRHLLQVINEILDITRIEAGRMPLNLSDFALPELLQEVMAELDPIIARTKLVV 369

Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGN 156
                    E     ++  +I+LNL   A      G     +         + S+K  G 
Sbjct: 370 DAALPPRLPEVHSDRQKVKQIVLNLLSNALKFTHEGSIQVNAEYQPSLSLVLISVKDTGI 429

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E   +I +                 +       LA     R+  +         +
Sbjct: 430 GI-AQEHQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRITVQSALGQGSTFT 488

Query: 211 ALLEK 215
             L +
Sbjct: 489 LHLPR 493


>gi|300113840|ref|YP_003760415.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
 gi|299539777|gb|ADJ28094.1| response regulator receiver modulated diguanylate
           cyclase/phosphodiesterase [Nitrosococcus watsonii C-113]
          Length = 1500

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 57/239 (23%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     L S  +     + + H++ +P+  +   LELL    +     + ++++  S 
Sbjct: 259 LKKARDAALESARIKGEFAASVSHELRTPLNGVIGMLELLSNTELTPNQREYVQVACGSG 318

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +     Y       +      Q     + +   V  + 
Sbjct: 319 ETLLDLIGNILDFSRIESGKFKLDSVDFYLQETLDDVIGLLAAQAQRKDLEIGYVVAENV 378

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
                  +    +IL+NL   A     +G           +  K    F ++  G     
Sbjct: 379 PLFMRGDATRIRQILINLMGNAVKFTEQGEVSIEVRLLEKKAKKLVLHFEVRDTGIGIPL 438

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +              +       L       L  E   D   +    + 
Sbjct: 439 EFLARVFEAFSQADSSTTRKYGGTGLGLAICRQLVDLMGGDLGVENNLDKGSLFWFTVP 497


>gi|300697811|ref|YP_003748472.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
 gi|299074535|emb|CBJ54086.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CFBP2957]
          Length = 675

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 73/234 (31%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL     ++ + +    +   + 
Sbjct: 287 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLAAIERSA 344

Query: 62  I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                     + ++   +G V   I       + +  +   + +A +K++ +        
Sbjct: 345 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMAREKQITIDTEYPPVP 404

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG + +SV  S    + +++  G        P  
Sbjct: 405 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASPEGLVATVRDTGIGIEPTFLPHV 464

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
           F +    +           +       L   +  R+       +    ++  L 
Sbjct: 465 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITATSNGTNLGTTMTVTLP 518


>gi|196044454|ref|ZP_03111689.1| sporulation kinase A [Bacillus cereus 03BB108]
 gi|225865624|ref|YP_002751002.1| sporulation kinase A [Bacillus cereus 03BB102]
 gi|196024489|gb|EDX63161.1| sporulation kinase A [Bacillus cereus 03BB108]
 gi|225787607|gb|ACO27824.1| sporulation kinase A [Bacillus cereus 03BB102]
          Length = 510

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEIDEEHKWYIDVMLSE 334

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|218532769|ref|YP_002423585.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218525072|gb|ACK85657.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 700

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 66/230 (28%), Gaps = 23/230 (10%)

Query: 8   NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
              + ++  +   + + H++ +P+  I    +LL +  ++ E    +     S       
Sbjct: 170 RAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTRLDPEQRTYVEAFRTSGKALLGL 229

Query: 64  -LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110
               +  +    G +D      D+  +             +  + +   +       ++ 
Sbjct: 230 VDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIADDLAALRVG 289

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEK---F 164
            +    +IL+NL   A      GG       S ++     + +++  G           F
Sbjct: 290 DADRVRQILVNLAGNAIKFTQTGGVGVSLARSGEEQGEGLVLTVEDTGPGIPEERIPILF 349

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+  ++ +   +       L       +              +L 
Sbjct: 350 EEFEQGDDSASHEGTGLGLAITRRLVERMNGTIEARSTMGRGSTFRVMLP 399


>gi|322435171|ref|YP_004217383.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
 gi|321162898|gb|ADW68603.1| histidine kinase [Acidobacterium sp. MP5ACTX9]
          Length = 657

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-----------D 47
           AK +   L  S  L A+  L + + H++ +P+ A+   LELL                  
Sbjct: 407 AKQLEQELDVSRRLAAIGRLTAGVGHEVKNPVNAMVVHLELLRAKLEAAGQGRGFLQGAQ 466

Query: 48  EVMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRV 100
             + ++                F R    +   +D    +  +  +         V+ R 
Sbjct: 467 RHVDILASEMERLDRVVQTLADFTRPMELHLSEIDLREVVERVVDLTGAEMAEHNVEVRC 526

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +              + +LNL + A  ++ +GG + + V+   +  +  +   G     
Sbjct: 527 ALEPAVMVRADGEMLRQAMLNLMLNAMQAMEQGGILRVGVRRDGDTALLVVADEGPGI-P 585

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   +I +    +      I       +   +   +            +  L 
Sbjct: 586 PELMPRIFELYFTTKPKGSGIGLAMTYRIIQMHGGAMEVTSEVGAGAAFTMRLP 639


>gi|229916990|ref|YP_002885636.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229468419|gb|ACQ70191.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 381

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           M ++    +   +      + + HD  +P+ AIH   ELL           +++  ++  
Sbjct: 133 MWRDQTEAVRFEERKDSFLAELSHDFRTPLTAIHGYTELLMTRHQGSEKSYQMLTQVKQE 192

Query: 57  SMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           S      +           + D            L D+    +    +      +     
Sbjct: 193 SERLERLVDNFLDYQKERYTADQLTVTTFALRPLLEDVMSSYQTTSPLHTVTFETNDVSI 252

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               ++  ++L NL   A    P GG V   V +     I S+   G             
Sbjct: 253 QADEKKLRQLLHNLIGNAIKYSPDGGTVHTRVFECAGTIILSVSDTGIGIPEEALPYVFD 312

Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +          +I    +       +A  +   +  + +       +  L
Sbjct: 313 EYYRVESAAHQSIKGTGLGLRICKRIAEAHGWGIHADSVYGEGTTFTIEL 362


>gi|223935238|ref|ZP_03627156.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223896122|gb|EEF62565.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1060

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
            K +   L     MD +  L   + HD  + +  I     LL   G  ++ M        
Sbjct: 672 QKRLEDQLRHSQKMDAIGQLAGGVAHDFNNILTVIQGHASLLRSSGKLEDFMITSAEQIV 731

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q    ++      L F R        +D  + + ++ +++   +  D  +Q ++      
Sbjct: 732 QAADRAAGLTRQLLTFSRRQMMQPKLLDLNVVVSNMTKMLGRILGEDIALQFNYAPNLPL 791

Query: 111 LSRE---RAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLK 152
           +  +     ++LLNL + +  ++  G                        + +     + 
Sbjct: 792 VHADSGMMEQVLLNLAVNSRDAMRGGGQLTVKIFGMEITGLEMNEHPEGRTGHFVCLKVS 851

Query: 153 INGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             G                    I     +    V  +  +++  +              
Sbjct: 852 DTGCGIEPKNLPHIFEPFFTTKAIGKGTGLGLATVYGIVKQHQGWIEVTSSPGVGTTFQV 911

Query: 212 LL 213
            L
Sbjct: 912 FL 913


>gi|149276959|ref|ZP_01883102.1| sensor histidine kinase with PAS signal sensor domains [Pedobacter
           sp. BAL39]
 gi|149232628|gb|EDM38004.1| sensor histidine kinase with PAS signal sensor domains [Pedobacter
           sp. BAL39]
          Length = 813

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 56/215 (26%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
           + + H++ +PI ++   L++L+      +   +  +   S     K   +          
Sbjct: 598 AMVSHELKTPITSVQAYLQILERNARAQDNAFVTGILEKSVSQIKKMTTMIDGFLNVSRL 657

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-VSWTGEKIDLSRERAKILLNLFM 124
                F      D    L + E+  +   +    +         +    +  +++ NL  
Sbjct: 658 ESGKIFIERKPFDMAGLLKESEEESKTMFSSHHIIYAPVLPMVIVADRNKIGQVINNLMS 717

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-----TIDSH 179
            A      G  + +  +        S+K  G      E                  I   
Sbjct: 718 NAVKYAVAGSSIWVKCEYIGGYVQVSVKDEGMGIAQEEINKLFDRYFRSRYVTEGNISGF 777

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I  Y    +   +  ++  E            + 
Sbjct: 778 GIGLYLSAEIIQRHGGKIWAESELGKGSTFYFTIP 812


>gi|229166865|ref|ZP_04294612.1| hypothetical protein bcere0007_18330 [Bacillus cereus AH621]
 gi|228616493|gb|EEK73571.1| hypothetical protein bcere0007_18330 [Bacillus cereus AH621]
          Length = 351

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 74/233 (31%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +       + +          +    +   L        +  + +  +K +++    +K+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ K     S+   G      +    
Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++ ++  E ++ +       + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 346


>gi|209963477|ref|YP_002296392.1| Nitrogen regulation protein NtrY [Rhodospirillum centenum SW]
 gi|209956943|gb|ACI97579.1| Nitrogen regulation protein NtrY [Rhodospirillum centenum SW]
          Length = 764

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 61/226 (26%), Gaps = 27/226 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQLIRLSSMSAIIRLKF 66
           A +  RI H+I +P+  I  S E L          +      +   I          +  
Sbjct: 514 ADVARRIAHEIKNPLTPIQLSAERLRRKYLKEIQSDPETFRTMTDTIVRHVDDIGRMVDE 573

Query: 67  MRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                     V        L     ++          +     E + +  +  +I   L 
Sbjct: 574 FSAFARMPSPVMKPTNLQELCRQAMLLHATAHPAIHFEADLPSEPLVVICDGRQIGQALT 633

Query: 124 MVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +   +                  G+V + ++  +      ++ NG      ++  ++ +
Sbjct: 634 NLLKNAGEAVEGREETAGGKTLPAGRVMVQLRADEERVTLLVEDNGKGL-PTDQRDRLTE 692

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             V +      +    V  +  ++   L  E        +  +L +
Sbjct: 693 PYVTTRAKGTGLGLAIVKKIMEDHGGALTLEDRPGGGARVGLVLPR 738


>gi|270308281|ref|YP_003330339.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
 gi|270154173|gb|ACZ62011.1| sensor histidine kinase/response regulator [Dehalococcoides sp. VS]
          Length = 1258

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 2    AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQL 52
             +       S     L A+  + + I H+I +P+  +     +L E         E +Q+
Sbjct: 884  EEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFASILMEREDLPRDVMEQLQI 943

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107
            I   S   +  +K M         V   + + ++               +  V   +   
Sbjct: 944  INSGSQRVVDIVKRMLTFARQAKPVRHQVNITELIDNTLELRSYVLKTANIAVIKQYEPG 1003

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFP 161
               L+ +  ++   +  +   +     K       +       +    S + +G     P
Sbjct: 1004 LPLLTVDPGQMQQVILNLILNAEYSMKKAHEKGTLNITVSKAGDRVKLSFRDDGLGM-PP 1062

Query: 162  EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++      +    +   +       +  E+   +  E            L 
Sbjct: 1063 EILAKLFQPFFTTKEPGEGTGLGLSLSHGIILEHGGTIRGESTPGEGAEFIIELP 1117


>gi|154498434|ref|ZP_02036812.1| hypothetical protein BACCAP_02423 [Bacteroides capillosus ATCC
           29799]
 gi|150272502|gb|EDM99687.1| hypothetical protein BACCAP_02423 [Bacteroides capillosus ATCC
           29799]
          Length = 490

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 68/224 (30%), Gaps = 19/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
            S  L +   + + H++ +P+ AI+   E +      +     + M +I   +      +
Sbjct: 264 QSEKLKSEFIASVSHELRTPLTAINGWAETIQNGEVRDAEDVRKGMSIIVSEARRLTNMV 323

Query: 65  KFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----- 111
           + +                 VD    L D     ++F   +  +      E+        
Sbjct: 324 EELLEFSRIEDGRFTLSIEPVDIKAELEDAVYTYKEFFRKEGIILNYEDTEEEFPTIEAD 383

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-QIVDG 170
                ++  NLF  A      G ++  +++  +++ I +++  G      E    +    
Sbjct: 384 PERLRQVFSNLFDNAAKHGGSGKRIDTAIRREEDQIIITIRDYGPGIPEEELPHVKYKFY 443

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              S      I       +   +   L     +    V++  L 
Sbjct: 444 KGSSKARGSGIGLAVCDEIITRHNGTLDIGNAEGGGCVVTIHLP 487


>gi|317474702|ref|ZP_07933976.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909383|gb|EFV31063.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1334

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69
             I H+  +P+  I + LE+L E      +    +  I  +++     +  +       + 
Sbjct: 821  NISHEFRTPLTLIVSQLEMLMERSDIQPLVYSKLVNIHRNTLRMKRLITELLDFRKQEQG 880

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLNLFM 124
               +  S  ++    D   +     A  K++ + +       E      +  K++ NL  
Sbjct: 881  FEKFKYSKQNIYSFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVVQLEKVIYNLLS 940

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181
             A    P GG +++SVQ+  N  + ++   G         + F +    +  +      I
Sbjct: 941  NAFKYTPLGGTISLSVQEYGNSVMVTVSDTGVGIAEESLDKIFDRFYQVDSMNNQKGTGI 1000

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +K ++    ++         L 
Sbjct: 1001 GLALAKSIIEAHKGKISVRSMEGKGTTFVVELP 1033


>gi|312126426|ref|YP_003991300.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776445|gb|ADQ05931.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 357

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 20/231 (8%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           N+  NL +  ++     S I H+I SP+ +I      L             + +I    +
Sbjct: 119 NMAANLKAMEEMRQEFISNISHEIGSPLTSIRGFASALKNENLSFEQRKHYLDIIENECI 178

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDL 111
                 + +            L               +  +    +K + ++ + ++I +
Sbjct: 179 RLSKLSENLLRLTMLDSEQYPLHLTTYRLDKQIQLTILEFEPQWSEKELDITLSLDEIII 238

Query: 112 SRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           + ++    ++  NL   A     +GG + I +   +   I ++   G      +      
Sbjct: 239 TADQDLLKQVWQNLIDNAIKFTLKGGAIKIQLYKKETYAIVTISDTGIGISEQDLPRIFE 298

Query: 169 DGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    +    V  +   +  ++               L 
Sbjct: 299 RFFKADKSRNRAVSGSGLGLSIVKKIVELHNGKIFVNSQLGKGTEFIIQLP 349


>gi|218131676|ref|ZP_03460480.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
 gi|217985979|gb|EEC52318.1| hypothetical protein BACEGG_03297 [Bacteroides eggerthii DSM 20697]
          Length = 1334

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69
             I H+  +P+  I + LE+L E      +    +  I  +++     +  +       + 
Sbjct: 821  NISHEFRTPLTLIVSQLEMLMERSDIQPLVYSKLVNIHRNTLRMKRLITELLDFRKQEQG 880

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLNLFM 124
               +  S  ++    D   +     A  K++ + +       E      +  K++ NL  
Sbjct: 881  FEKFKYSKQNIYSFLDEIYLSFKEYARGKQINLEFLNKDRNLEVWFDVVQLEKVIYNLLS 940

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181
             A    P GG +++SVQ+  N  + ++   G         + F +    +  +      I
Sbjct: 941  NAFKYTPLGGTISLSVQEYGNSVMVTVSDTGVGIAEESLDKIFDRFYQVDSMNNQKGTGI 1000

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +K ++    ++         L 
Sbjct: 1001 GLALAKSIIEAHKGKISVRSMEGKGTTFVVELP 1033


>gi|253700700|ref|YP_003021889.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775550|gb|ACT18131.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1260

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 67/244 (27%), Gaps = 32/244 (13%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
             K +   L  +  + A+  L   + HD  + +  I    +LL              ++++
Sbjct: 876  RKKLEEQLRQAQKMEAVGQLAGGVAHDFNNILTVIMGFGQLLQHSLPAGDPMLESMEQIL 935

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 ++      L F R        V+         + +   I  D  ++  +  EK+ 
Sbjct: 936  DAADRATHLTRSLLAFSRKQVMLLHQVELSDLARKHAKFLVRIIGEDVTLKTYFCEEKLM 995

Query: 111  LSRERAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLK 152
            +  +  +I   L      A  ++P               +               + ++ 
Sbjct: 996  VMADSGQIEQVLMNLATNARDAMPGGGELIIKTEAVQLDKAFHRLHGYGMPGRYALITVT 1055

Query: 153  INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              G     PE   +I +    + +      +    V  +  ++   +            S
Sbjct: 1056 DTGTGM-DPETQQKIFEPFFTTKLPGRGTGLGLSIVYGIIKQHGGYVTIFSQRGFGTTFS 1114

Query: 211  ALLE 214
              L 
Sbjct: 1115 IYLP 1118


>gi|228997624|ref|ZP_04157234.1| hypothetical protein bmyco0003_21980 [Bacillus mycoides Rock3-17]
 gi|228762133|gb|EEM11069.1| hypothetical protein bmyco0003_21980 [Bacillus mycoides Rock3-17]
          Length = 247

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 84/222 (37%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E  +          +
Sbjct: 18  RSKLVKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPDLPQESREQYIEHILGELN 77

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLS 112
            + +I   ++  A   +  VD+++   +++++I   + +     ++ +           +
Sbjct: 78  RAQVIIDDYLTFAKPASQKVDNIVIDQELKRIISMMMPLCNMNSINVSENLVTGSITGNT 137

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GGK++I     +N+    +K +G      E+  +  +   
Sbjct: 138 QHFQQCFLNLIKNSIEAMPNGGKLSIKSSACENKITIVIKDSGIGM-TQEQINRFGEPYF 196

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +     + +       L    I +    L+    
Sbjct: 197 STKKRGTGLGTMVAVKIIETMNGTLDINSIVNKGTTLTITFP 238


>gi|256830398|ref|YP_003159126.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579574|gb|ACU90710.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 566

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 59/238 (24%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE-------- 46
           + +     + +  L A+  L + + H+I +P+  +  +     +LL              
Sbjct: 324 LQQMQKHVMDAGKLAAIGELAAGVAHEINNPLAIMMENAGWIQDLLKSDDPHSEENTEEI 383

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQ 101
              +Q I             +        S    + +  +         +     +  ++
Sbjct: 384 FSSLQTITTQGHRCREITHKLLSFARKADSATKAVNINSLLDDIAGFARQKAKYRNVEIR 443

Query: 102 VSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNL 157
           +S             E  +I+LNL   A  ++     +       ++      ++ NG  
Sbjct: 444 LSLDPNAGEVDSSPAEIQQIILNLVNNAIDAIEHDDGMVQLRSFREHSFVRIDVEDNGQG 503

Query: 158 ARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                   +       L  +    +  +       V    L 
Sbjct: 504 IPADILPQIFEPFFTTKDAGKGTGLGLSICRDLLSKMGGSISVDSAPGQGCVFHVRLP 561


>gi|218437801|ref|YP_002376130.1| histidine kinase [Cyanothece sp. PCC 7424]
 gi|218170529|gb|ACK69262.1| histidine kinase [Cyanothece sp. PCC 7424]
          Length = 363

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 61/208 (29%), Gaps = 11/208 (5%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L  +I H++ +P+  I    E L     ++   + +     +     + +          
Sbjct: 157 LIHKIGHELRNPLSLISLMAENLKLSFPQETGQKQVLSIQETIKDLNQSLTQLIDCGKRS 216

Query: 78  DSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERAKILLNLFMVAH 127
              + L D+  ++   +   + +                       +  ++  NL   A 
Sbjct: 217 RLKLELSDLRLIVLKSLKNFQPLLTSKSITLNYPQDKEAIIAVDHLQIQQVFGNLLSNAI 276

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
              P GG +T + Q  + E I ++   G      +    I             +    V 
Sbjct: 277 YFSPEGGIITCNWQIFQQEIIVTITDQGQGLSSQDLK-HIFTPFYSRRPGGTGLGLTIVQ 335

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  ++   +  E +       + +L +
Sbjct: 336 KIIMDHGGSIWAENLPSVGTKFTFILPR 363


>gi|126658342|ref|ZP_01729491.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
 gi|126620274|gb|EAZ90994.1| two-component sensor histidine kinase [Cyanothece sp. CCY0110]
          Length = 438

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 70/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51
           +A+ +   L+ +         L S + H++ +P+  +   L+  L        I+ E ++
Sbjct: 201 LAQTLQTTLTRLSNAWEDQRQLVSNVSHELRTPLTVVSGYLQSTLRRGNNLTDIQREALE 260

Query: 52  LIRLSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +   +  L+ +           +    ++     L +IE ++  +         +
Sbjct: 261 TASSEADRTVQLLQDLLDLARAEHGGMYFNLETIFLNELLTEIEGMVYQYPISVNLSLPN 320

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              +         ++ LNL   A         + I +  +K +    +   G      + 
Sbjct: 321 ELIKVKGDKNRLKQVFLNLIDNAVKYSHSSEPILIKLTQNKQQAKIEVCDRGVGIPLADQ 380

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +      +    +    V  L       +      +   + + LL 
Sbjct: 381 TRIFERFYRVDEARSRNVGGTGLGLSIVKTLVEGMGGTINVISQPNQGTIFTILLP 436


>gi|147676581|ref|YP_001210796.1| hypothetical protein PTH_0246 [Pelotomaculum thermopropionicum SI]
 gi|146272678|dbj|BAF58427.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 487

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 70/243 (28%), Gaps = 32/243 (13%)

Query: 4   NICFNLSSMDLVAL---------LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEV 49
           ++   L    + AL           + + H++ +P+  +    E L +          + 
Sbjct: 244 SLSLRLQD-KVAALERLDQTRREFVANVSHELRTPLSIMLGYTEALIDGLAHSDTDRQKY 302

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           +  I    +     +  +                   +  +          +A  K V++
Sbjct: 303 LNNIHEEILRLRRLVTELLDLSRMEAGQVNAEMHETDVAAVAGRVFDKFQAVAAKKGVEL 362

Query: 103 SWT-----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             +        +       ++ +NL   A    P GG V ++  + KNE   S+   G+ 
Sbjct: 363 RNSLPSVLHPVLANPDRLEQVFINLLDNAIRVTPAGGVVEMTAYELKNELRVSISDEGHG 422

Query: 158 ARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               E    + +    +     T +   +    V  +   +   +    + +     S  
Sbjct: 423 IPPEEQPLVWERFYKVDKSRTRTGEGTGLGLAIVKKIVEAHGGSVEIASMPEKGSTFSFT 482

Query: 213 LEK 215
           + K
Sbjct: 483 IPK 485


>gi|27382035|ref|NP_773564.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27355205|dbj|BAC52189.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 455

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 69/258 (26%), Gaps = 44/258 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPI--------------GAIHNSL------- 37
           + +     +    + +L  L + + H++ +PI               AI   L       
Sbjct: 196 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFVYGNIHTLIRYRAAIVAYLDAIHGKG 255

Query: 38  ---------------ELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
                          E++++   + +  M+     S       +      G    V+   
Sbjct: 256 RASDLAALKKSLRIDEVMEDFGPLIEGTMEGAVRISEIVKNLRRLSFSKLGEVERVNIER 315

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMVAHASLPRG--GKVT 137
            +            V   +Q+             +  ++++NL   A  ++      ++ 
Sbjct: 316 LINTAVLWAVRTKQVRIDLQMELEPELWISGNEGQLHQVIVNLVENAIDAMRDTELPRLV 375

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIR 196
           +S     NE +F +  NG                    +     +  +    +  E+   
Sbjct: 376 VSAARKGNEILFRISDNGPGIDKDHISHIFEPFFTTKRVGEGTGLGLWISYGIVREHGGE 435

Query: 197 LLPEIIDDHNVVLSALLE 214
           LL     D     S  L 
Sbjct: 436 LLAANEPDGGATFSFALP 453


>gi|114567432|ref|YP_754586.1| signal transduction histidine kinase-like protein [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
 gi|114338367|gb|ABI69215.1| PAS/PAC sensor signal transduction histidine kinase [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 878

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 65/221 (29%), Gaps = 13/221 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M K +   L+ +  V  + + I H++ +P+  +   L+L+ +     +            
Sbjct: 646 MEKEM-LRLAQLQTVGEMAAGIGHEVRNPMTTVRGFLQLMSQNTELTKYQAYFDTMLEEL 704

Query: 61  II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         K   +        D +  L  +             +++      + 
Sbjct: 705 DRANSIISEFLSLAKNKMVNLHNLNLNDIITQLYPLLLADAMVSDKYILLELGEIPNLLL 764

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +E  ++++NL      ++  G  + IS +    E I S+K  G        + ++   
Sbjct: 765 DDKEMRQLIINLVRNGLEAMEGGQSLEISTRLEAEEVILSIKDQGKGIDKSY-WGKLGTP 823

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              +      +       +A  +   +  +   +       
Sbjct: 824 FFTTKDKGTGLGLAICYSIARRHNASIRVDSS-NRGTTFEV 863


>gi|47567925|ref|ZP_00238632.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|229157216|ref|ZP_04285296.1| hypothetical protein bcere0010_34000 [Bacillus cereus ATCC 4342]
 gi|47555403|gb|EAL13747.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|228626280|gb|EEK83027.1| hypothetical protein bcere0010_34000 [Bacillus cereus ATCC 4342]
          Length = 510

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIHTCNMQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|186685728|ref|YP_001868924.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
 gi|186468180|gb|ACC83981.1| multi-sensor hybrid multi-kinase [Nostoc punctiforme PCC 73102]
          Length = 2370

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 18/217 (8%), Positives = 56/217 (25%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            + + H++ +P+  I    +L+    ++         +          +         +  
Sbjct: 2003 AVLSHELRTPLNPILGWTKLMRSRKLDQATSDRALETIERNAKLQTQLIEDLLDVSRILQ 2062

Query: 80   LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----------------AKILLNLF 123
                 +   +    +       V  + +   +  +                  +++ N+ 
Sbjct: 2063 GKLNLNFGPINLVSVIEAAIETVRLSAQAKSIEIQTIFEFGVGSVLGDANRLQQVIWNIL 2122

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178
              A    P  G+V I ++   ++    +   G             + +  DG        
Sbjct: 2123 SNAIKFTPSEGQVKIKLEQVGSQVQICVTDTGKGIAPEFLPYVFDYFRQADGATTRQFGG 2182

Query: 179  HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
              +    V  L   +   +  E   ++     +  L 
Sbjct: 2183 LGLGLAIVRHLVELHGGTVQAESLGEEQGATFTVRLP 2219


>gi|330967202|gb|EGH67462.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 984

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 745 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 804

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                +       +  +      V      +     +
Sbjct: 805 RVSRIVQSLMSFAHAGAHQHSDEAVCLAEVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 864

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 865 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEASEHTVDLIVEDEGSGI-SKAIMDRLFE 923

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 924 PFFTTKDPGEGTGLGLALVYYIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 975


>gi|315178838|gb|ADT85752.1| osmolarity sensor protein EnvZ [Vibrio furnissii NCTC 11218]
          Length = 435

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  +E  + + ++      +      + 
Sbjct: 221 IQALEADRALLMAGISHDLRTPLTRIRLATEMMSPEESYLAEGIISDTEECNEIISQFMD 280

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLFM 124
           +++     +     L  + +     E    V   V +               + + NL +
Sbjct: 281 YLKPVNKQSFEQVDLNEIANDVATSEGGYEVQVDVSLHPEFVPAFGNPIAIKRAVSNLVV 340

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K      ++ NG      +    F     G+     +   +
Sbjct: 341 NALRYGNGWVKVSTGLTVDKKMAWVCVEDNGPGIEPSQVNKLFEPFTRGDTARGSEGTGL 400

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +      +  +       
Sbjct: 401 GLAIVKRIISQHHGSVAVNNRSEGGLKAQISFP 433


>gi|260770796|ref|ZP_05879725.1| osmolarity sensory histidine kinase EnvZ [Vibrio furnissii CIP
           102972]
 gi|260614033|gb|EEX39223.1| osmolarity sensory histidine kinase EnvZ [Vibrio furnissii CIP
           102972]
          Length = 435

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  +E  + + ++      +      + 
Sbjct: 221 IQALEADRALLMAGISHDLRTPLTRIRLATEMMSPEESYLAEGIISDTEECNEIISQFMD 280

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLFM 124
           +++     +     L  + +     E    V   V +               + + NL +
Sbjct: 281 YLKPVNKQSFEQVDLNEIANDVATSEGGYEVQVDVSLHPEFVPAFGNPIAIKRAVSNLVV 340

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K      ++ NG      +    F     G+     +   +
Sbjct: 341 NALRYGNGWVKVSTGLTVDKKMAWVCVEDNGPGIEPSQVNKLFEPFTRGDTARGSEGTGL 400

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +      +  +       
Sbjct: 401 GLAIVKRIISQHHGSVAVNNRSEGGLKAQISFP 433


>gi|206968327|ref|ZP_03229283.1| sporulation kinase B [Bacillus cereus AH1134]
 gi|228951820|ref|ZP_04113918.1| hypothetical protein bthur0006_12340 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229078624|ref|ZP_04211181.1| hypothetical protein bcere0023_12890 [Bacillus cereus Rock4-2]
 gi|206737247|gb|EDZ54394.1| sporulation kinase B [Bacillus cereus AH1134]
 gi|228704694|gb|EEL57123.1| hypothetical protein bcere0023_12890 [Bacillus cereus Rock4-2]
 gi|228807743|gb|EEM54264.1| hypothetical protein bthur0006_12340 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 402

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLTNLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|138895943|ref|YP_001126396.1| two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248834|ref|ZP_03147534.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134267456|gb|ABO67651.1| Two component system histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211710|gb|EDY06469.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 468

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +P+  I    E L          E   ++LI   +      ++ +       
Sbjct: 246 ANVSHELRTPLSYIKGYSEALLSGLARTKEEEQSHLRLIHRETERMERLVRDLLDLAQLE 305

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                           +  + D+ + I     +     + +       +    +++ NL 
Sbjct: 306 GQSVPLERAPVAFAQVIEDVMDMYRPIITQKRLTLTCDLDYELIVDGDADRLEQVVRNLL 365

Query: 124 MVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTID 177
             A    P GG VT+   + S  E    ++  G      +      +             
Sbjct: 366 DNAIRYTPEGGAVTVRLSRFSDTEGELVIRDTGKGIPKDQLPLLGQRFFRVDRARTRKEG 425

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +   +  +        +S  L 
Sbjct: 426 GTGLGLAIVKQIVALHGGAIQFDSDLGQGTTVSVRLP 462


>gi|160880259|ref|YP_001559227.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160428925|gb|ABX42488.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 464

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 74/230 (32%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
           N+  +L   + +   L S + H++ +P+  I   +E + E       E ++         
Sbjct: 234 NLASSLEKQEGIRKQLTSDVSHELRTPLTTIGTHIEAMIEGVWEPTTERLKSCYEEINRI 293

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +K +                + ++  +I         E +        +      + 
Sbjct: 294 TNLVKDLEQLAKVENDNLKLNITSVNILEVIDTIKDNFETEIYNKSLDVSVIGTASTILV 353

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                +++++NL   A    P  GK+ IS++D +   +  +K NG      E    F + 
Sbjct: 354 DKERISQVIINLLSNAIKYTPDFGKIVISLEDYETNLVIQMKDNGIGIPEEELPFIFERF 413

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +           I    V  + H +  ++      +   V   +L +
Sbjct: 414 YRADKSRNRRTGGAGIGLAIVKSVVHSHGGKVEVSSKLETGTVFRVILPR 463


>gi|94265927|ref|ZP_01289653.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453513|gb|EAT03921.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 58/254 (22%), Gaps = 40/254 (15%)

Query: 1   MAKNICF---NLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIED 47
           M  N       + + +L           +   + + H+I +P+  +     LL    + D
Sbjct: 139 MESNRRLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDLSD 198

Query: 48  EVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIE 91
           E     ++   S                       +         +   + +    Q   
Sbjct: 199 EQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDHRPFSPRELVEEVAVLLRPQAAA 258

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKN 145
             IA+   V                ++LLNL   A      GG                 
Sbjct: 259 QNIALTSEVSPDIPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAMELSPAPADPAAPHC 318

Query: 146 ENIFSLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPE 200
              F++K +G      +    F +    +           +       L       +  E
Sbjct: 319 SLHFAVKDSGIGIPVEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLVELMGGEIGVE 378

Query: 201 IIDDHNVVLSALLE 214
             +         + 
Sbjct: 379 SEEGKGSTFWFTVP 392


>gi|86160727|ref|YP_467512.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777238|gb|ABC84075.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 591

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
           +         +  L A+  L + + H++ +P+ A+    ++L E          + E ++
Sbjct: 324 LRSMQAAAEHAERLAAIGRLVAGVVHELNNPLTAVTMYSDVLLERFTARGQDPADVEKLR 383

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
            I+ +        + +      TG+    + L                       R    
Sbjct: 384 AIKDAGQRIQRLARDLVTYARPTGARTEAVDLVPAVDEAGRMAKPALKEAGAALVRDGGD 443

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +++L L   A  ++P GG+V + +   + E + ++   G     PE 
Sbjct: 444 GPYVVEGNRPSLVQVVLALVTNAAQAVPPGGEVRVGLAREEGEVVLTVADEGAGM-PPEV 502

Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +    +       +    V  +   +   +           ++  L 
Sbjct: 503 AARAFEPFFTTRAGVGIGLGLPIVQGIVERHGGSVSLTTAAGRGTTVTVRLP 554


>gi|73662383|ref|YP_301164.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72494898|dbj|BAE18219.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 562

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 63/221 (28%), Gaps = 20/221 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKF 66
            +L     + + H++ +PI +I    E L +         +E +++I   S      +  
Sbjct: 339 ENLRREFVANVSHELKTPITSIKGFAETLLDGAKNDEQTLNEFLKIISKESDRIETLVFD 398

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERA 116
           +          + +     + ++ E  I   + +          ++           + +
Sbjct: 399 LLDLSHVEQQTEIVTEYVSLSEIAESTIKNMQNIAEEKQITIVNEIKPDIVIDANKDKVS 458

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN-- 171
           ++ LNL   A +      +V + V    N+ I  ++  G           F +    +  
Sbjct: 459 QVALNLLSNAVSYSKASSEVIVRVYKDANKRIMEVQDFGIGISAEDQQHIFERFYRVDKA 518

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    +       +   +  R+      +        
Sbjct: 519 RSRDSGGTGLGLSITKHIMEAHNGRINVFSRPNEGSTFRVT 559


>gi|115378758|ref|ZP_01465903.1| SdeK [Stigmatella aurantiaca DW4/3-1]
 gi|115364242|gb|EAU63332.1| SdeK [Stigmatella aurantiaca DW4/3-1]
          Length = 828

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 20/234 (8%)

Query: 2   AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLS 56
            K     L  + +        + HD+ +P+ AI  S  +L              + I  S
Sbjct: 581 RKQQEERLRQTAEFRERFMGVVSHDLRNPLNAILLSANVLLRTDGVHANHAKVARRIVAS 640

Query: 57  SMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106
               +  +  +              +            + + +       + R+      
Sbjct: 641 GERMVRMIGELLDFTRGRLGGGIPVHLHPCHLRQLCRHVLEELEISHPGRELRLNAQGHF 700

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP----- 161
             +      A++L NL   A    P G  V  ++ D  +     +   G           
Sbjct: 701 PGMWDPDRLAQLLDNLGKNALDYSPAGTPVDFTLLDCGDTLRIEVHNEGPPIPPALMPVI 760

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  +              +  + V  +A  +   +     +      +  L +
Sbjct: 761 FEPFRRAVAGDAHPTSGLGLGLFIVQQIAQAHGGTVSVNSQEGQGTTFTVQLPR 814


>gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
 gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
 gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
          Length = 1390

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 59/236 (25%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMS 59
            +     L+ +DL      S I H+  +P+  I     E+L    ++  V + + L+  +
Sbjct: 338 QQRRAEELAELDLAKTTFFSNISHEFRTPLTLILGPLAEMLRTSELDVRVREELELAHRN 397

Query: 60  AIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107
            +                          VD      ++  V    I              
Sbjct: 398 GLRLAKLVNTLLDFSRIQAGRMRAQFEPVDLAAVTAELASVFRSAIERAGLEFTVDCPPL 457

Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       K++LNL   A      G        D       ++   G      E  
Sbjct: 458 AEPVFVDRDMWEKVVLNLLSNALKFTREGAVTVRVTADDGVAV-VTVADTGVGIPEAE-M 515

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +           + +   I    V  L   +   +  +  +      +  + 
Sbjct: 516 PRLFERFHRVETVDARSTEGSGIGLALVKELIGLHGGTIGAQSEEGRGTTFTIQMP 571


>gi|308272282|emb|CBX28888.1| hypothetical protein N47_B20340 [uncultured Desulfobacterium sp.]
          Length = 478

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + K     + +  L ++  L S I H + +P+  I  S ++L       +      ++  
Sbjct: 242 LEKRQEQLVQTKKLSSIGILTSGIAHQLNNPLNNISTSCQILLEEGSKADPEFMHRMLSN 301

Query: 53  IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           I      A       L+F R              +    +++   +     +Q +   + 
Sbjct: 302 IEQEVNRARDTVKGLLEFSRDRDFALVPASLDEVVERSIRLVSSQVPSGIEIQKNIPKDL 361

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL---KINGNLARFPEK 163
                 +   ++ LNL + A  ++     +             ++   +  G      E 
Sbjct: 362 VLDIDKQRIQEVFLNLMINAVQAIESSSGIIKISAKPDRAASMAVITFEDTGGGI-PEEN 420

Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F  I D    +        +    V  +  ++K  +  E            L 
Sbjct: 421 FDMIFDPFFTTKEVGVGTGLGLSIVYGILQQHKGSISVESKLGEGTRFIINLP 473


>gi|298249886|ref|ZP_06973690.1| response regulator receiver sensor signal transduction histidine
           kinase [Ktedonobacter racemifer DSM 44963]
 gi|297547890|gb|EFH81757.1| response regulator receiver sensor signal transduction histidine
           kinase [Ktedonobacter racemifer DSM 44963]
          Length = 385

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 30/239 (12%)

Query: 5   ICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
               L S  + A           S + H++ +P+ +I    +LL +     E  Q ++L 
Sbjct: 134 EREKLISEQMAAQELEKRKNEFMSMVVHEVKTPLTSIKGYAQLLSKRYKRSEDDQALQLV 193

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------- 108
           +       K   L            G+  I +    F  + K +                
Sbjct: 194 NRMNAQVSKLTSLLDDLLDVTRISGGMLSISEEFFPFDELVKEIVEDLQAVNEQFTLEVE 253

Query: 109 -------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          +++ N    A        ++ + +  S  +    ++  G      
Sbjct: 254 GESNATIWGDRMRLGQVITNFLTNAMKYASNSTRIVVKIFLSDQDVTLCVQDFGPGI-AK 312

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I           + +I    +  +    +  +++ R+  E  +         L 
Sbjct: 313 DVQEKIFTPFFRQEHPEQRSIPGLGLGLHIASEIIRQHEGRIWVESEEGQGATFCFSLP 371


>gi|161502574|ref|YP_001569686.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. arizonae serovar
           62:z4,z23:-- str. RSK2980]
 gi|160863921|gb|ABX20544.1| hypothetical protein SARI_00618 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 928

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 432 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 491

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 492 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 551

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +    S++  G     
Sbjct: 552 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSISVRDTGVGIPA 610

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 611 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 669


>gi|119717079|ref|YP_924044.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119537740|gb|ABL82357.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 712

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           + +   + ++ +     + + H++ +P+ ++   LELL E     + +            
Sbjct: 475 QEVTDLMRAIQVKDEFVASVSHELRTPLTSVLGHLELLGERDDLTDEVAAQLRVVQRNAA 534

Query: 63  RLKF---------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           RL+                + L  G       +    +  + + D   V  RV+   T  
Sbjct: 535 RLQALLSDLLLIGQIADGTLELNSGPVDLRTVVDEAVEAVRAVADQSDVSIRVEAPGTLP 594

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +   +   ++L NL   A      G  VT+ ++ + +     +   G      ++    
Sbjct: 595 AVADGQRLRQVLDNLLSNAIKYGRAGCSVTVELRRADDGVELLVADTGMGIADHDREHVF 654

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +    +    V  +   +   +  E            L 
Sbjct: 655 GRFFRGGEAVRQHLPGTGLGLSIVASIVAAHGGTVTVESELGRGSTFRVALP 706


>gi|309388596|gb|ADO76476.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 20/223 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLK 65
             L     + + H++ SP+ +I  S E+L +  IE+E  Q      +++ S+  A +  +
Sbjct: 367 EKLQREFVANVSHELKSPLTSIKGSAEILLDGIIENEAQQKEYLKMILKESNSLAHLIDE 426

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RA 116
            + LA   +G V+       ++ + +D       ++      + +   +           
Sbjct: 427 TLTLAEIDSGGVELNKEKIKVKTLFQDLEIFFDNIKKEEQSLEFEFEADLELYANREKIR 486

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           ++L+NL   +     + GK+ +       +   S+  NG      E    + +    +  
Sbjct: 487 QVLINLLTNSVKYSAKKGKIKLKALQMAEKIKISVSDNGIGIPKAEQKNIWERFYKIDKA 546

Query: 174 STID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T    S  +    V  +  E++ +L  +         S +L 
Sbjct: 547 RTPGERSSGLGLAIVKQIIQEHQGKLALKSQVGEGSTFSFILP 589


>gi|291085107|ref|ZP_06352077.2| sensor protein RcsC [Citrobacter youngae ATCC 29220]
 gi|291071984|gb|EFE10093.1| sensor protein RcsC [Citrobacter youngae ATCC 29220]
          Length = 928

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    + + V +L+   
Sbjct: 432 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPNGVDRLVTAM 491

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + ++                    +
Sbjct: 492 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFI 551

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           +++ NL   A       G + + VQ   +     ++  G     
Sbjct: 552 DPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCDGDYLSIRVRDTGVGIPA 610

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 611 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 669


>gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 435

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 19/264 (7%), Positives = 57/264 (21%), Gaps = 50/264 (18%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIE------- 46
           +  ++   + + D+        +   + + H++ +P+ AI    +LL+    +       
Sbjct: 162 LEDSLRELIQARDVAEKASQAKSQFLAMMSHELRTPLNAIIGYSQLLEMEAQDQDLNEFI 221

Query: 47  -------DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                       L+ + S    +               +    + ++    +     +  
Sbjct: 222 PDLQQISHAGQDLLEIFSNILEMCQIEAGKHRFNVYEFEVKALIDEVIAQNQPLADKNNN 281

Query: 100 ----VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG--------------------K 135
                 V+  G          + +L L   +      G                      
Sbjct: 282 TLTVHFVNDPGSVCADRIWMRQCVLQLLSNSCKFTHNGTITVSLERHNRSQLQSKSSVYN 341

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLA 190
              S    ++  +      G   +                          +       L+
Sbjct: 342 QVNSTDCLEDVILVKCNDTGIGIKAEYVSQIFEPFFQVDGSTTRKYGGVGLGLAIAKSLS 401

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
                 +  E +       +  L 
Sbjct: 402 QLMGGDISVESVFGQGSTFTLWLP 425


>gi|99080803|ref|YP_612957.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99037083|gb|ABF63695.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 823

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L+       L + + H++ +P+  I  SL++L+ +    E  + ++   +S 
Sbjct: 335 LRRARDDALAGEQAKDRLLTVMSHEMRTPLTGILGSLDVLEGLTPSAEQQRYLQAMRVSG 394

Query: 61  IIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--- 110
            + L  +      +               L ++ + I +    +     +          
Sbjct: 395 ELLLHHVNDVLQLSRLESGAEADAPIRFDLDELVRGIGESQQANAARNNNDLSVFCSLGA 454

Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   R   ++LLNL   A      G      ++   +   FS+   G      +  
Sbjct: 455 ETGVEGHCRYVQQVLLNLIGNALKFTQDGAVSVDVMRTEGDLVEFSVADTGKGIAAEDLE 514

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    D N     +   +       LA      +  E       + S  + 
Sbjct: 515 RIFDEFTMVDPNYNRGCEGTGLGLAISRRLARLMGGEITCESEPGEGSLFSFTIP 569


>gi|27364305|ref|NP_759833.1| osmolarity sensor protein [Vibrio vulnificus CMCP6]
 gi|27360423|gb|AAO09360.1| Osmolarity sensory histidine kinase EnvZ [Vibrio vulnificus CMCP6]
          Length = 432

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           +  ++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 216 IQELEADRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMD 275

Query: 66  FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++     +   VD     GD+      +    +                  + + NL +
Sbjct: 276 YLKPVNTQSFTEVDINGISGDVASSEGGYEVQIETAFQPSIRTAFGSPIAIKRAVSNLVV 335

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        K++  +          ++ NG      +    F     G+     +   +
Sbjct: 336 NALRYGNGWVKISTGMTADSKLVWVCVEDNGPGIEKSQVAKLFEPFTRGDTARGSEGTGL 395

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   ++     +  + +     
Sbjct: 396 GLAIVKRIVSQHHGSVVVNNRSEGGLKVQLSFP 428


>gi|37678421|ref|NP_933030.1| osmolarity sensor protein [Vibrio vulnificus YJ016]
 gi|320157696|ref|YP_004190075.1| osmolarity sensory histidine kinase EnvZ [Vibrio vulnificus
           MO6-24/O]
 gi|37197160|dbj|BAC93001.1| osmolarity sensor protein EnvZ [Vibrio vulnificus YJ016]
 gi|319933008|gb|ADV87872.1| osmolarity sensory histidine kinase EnvZ [Vibrio vulnificus
           MO6-24/O]
          Length = 432

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           +  ++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 216 IQELEADRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMD 275

Query: 66  FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++     +   VD     GD+      +    +                  + + NL +
Sbjct: 276 YLKPVNTQSFTEVDINGISGDVASSEGGYEVQIETAFQPSIRTAFGSPIAIKRAVSNLVV 335

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        K++  +          ++ NG      +    F     G+     +   +
Sbjct: 336 NALRYGNGWVKISTGMTADSKLVWVCVEDNGPGIEKSQVAKLFEPFTRGDTARGSEGTGL 395

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   ++     +  + +     
Sbjct: 396 GLAIVKRIVSQHHGSVVVNNRSEGGLKVQLSFP 428


>gi|309791045|ref|ZP_07685581.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308226900|gb|EFO80592.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 883

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 25/228 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRL 64
           +  L   L +   H++ +P+ +I   +++L           + E +++I+ + +  ++ +
Sbjct: 651 ADRLKTELMATASHELRTPMTSIRGFVDMLMLGTFGEVSATQREPLRVIKNNVVRLVVLI 710

Query: 65  KFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDLS 112
             +                    + +    I  +   F   +  + V +       +   
Sbjct: 711 DELLDMSRVEAGEARLRREELDLAEVLRDVIAVLTSQFREREIELHVDFQEGLPHVVADR 770

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +I +NL   A    PRGG V I + +   E    ++  G      E  + I     
Sbjct: 771 QRIEQIAVNLIGNACKYTPRGGTVWIGMHNGNGELRVDVRDTGVGI-SEEAKSHIFTPFY 829

Query: 173 E------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +       L   +  R+  E   +     S +L 
Sbjct: 830 RADNPLRDEVGGTGLGLSITQRLVELHGGRIWFESEVNAGSTFSFVLP 877


>gi|299529485|ref|ZP_07042922.1| osmosensitive K+ channel signal transduction [Comamonas
           testosteroni S44]
 gi|298722348|gb|EFI63268.1| osmosensitive K+ channel signal transduction [Comamonas
           testosteroni S44]
          Length = 897

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     +    +   L S + HD+ +P+  I  + +       +     ++      A 
Sbjct: 658 AQQTQIAMEGERMRNTLLSAVSHDLRTPLTGILGAAQAALPHAPQGPAHHMLVQIRNQAQ 717

Query: 62  IRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              + +                      +  L                +Q S   +   L
Sbjct: 718 ALQQLVDNLLAMARLQQGGVQLKREWLPVDELVGSALAQMRERLAAHALQTSLPADLPLL 777

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +     ++L+NL   A    P G  +T++   +  + + S++  G          Q+ 
Sbjct: 778 QLDAVLMERVLVNLLDNAIKYTPEGTTITVAASVADGDCVLSVQDAGPGLPGHLSPEQLF 837

Query: 169 DGNVESTID----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           +       +       +       +   +  RL           V S  L 
Sbjct: 838 EPFTRGQAESAVFGMGLGLALAQRIVQAHGGRLRVAAADPGPGTVFSISLP 888


>gi|254784466|ref|YP_003071894.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
 gi|237686265|gb|ACR13529.1| PAS/PAC sensor hybrid histidine kinase [Teredinibacter turnerae
           T7901]
          Length = 781

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 59/240 (24%), Gaps = 29/240 (12%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +   + + +   +   + + H+I +P+  +   +E+L +  + D     + +   S 
Sbjct: 253 TRRMIERVKAANQAKSQFIATMSHEIRTPMNGVIGMIEMLRDTPLNDSQKHYLDVIFRSG 312

Query: 61  IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
              L+ +     Y+              D    L D  Q+               +    
Sbjct: 313 ESLLEIINDILDYSKIEAGKMNLENVDFDLNELLNDCVQLFSATTHKRDIEFVCAISPET 372

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159
             +         +I++NL   A      G  +                 FS+  +G    
Sbjct: 373 PTQLRGDPTRLRQIVVNLIGNAFKFTSNGHVMVLVKSLQDRTSEHPLLRFSIVDSGIGI- 431

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E    +                   +       LA      +  E            +
Sbjct: 432 SKEIQRNLFQAFNQADTSTTRRYGGTGLGLAICKQLAELMGGTIGVESEYGKGSTFWFTI 491


>gi|229162473|ref|ZP_04290434.1| hypothetical protein bcere0009_32450 [Bacillus cereus R309803]
 gi|228620952|gb|EEK77817.1| hypothetical protein bcere0009_32450 [Bacillus cereus R309803]
          Length = 516

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 71/227 (31%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEENKWYVDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       + +    + ++   ++   I     + +     K D+
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFKHKHDI 400

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
             +  ++          A  ++P GG + I ++    N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINVLKNAIEAMPNGGNIFIQIKPLDDNFIVIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506


>gi|169830722|ref|YP_001716704.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169637566|gb|ACA59072.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Candidatus Desulforudis audaxviator MP104C]
          Length = 579

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 67/217 (30%), Gaps = 12/217 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRL 64
            L  ++L+  + + I H+I +P+ A+   L++  E        + + L+      A   +
Sbjct: 354 RLDRLNLIGEMAAGIVHEIRNPLTAVRGFLQMFRERKEWSDYTKHLDLMTAELDRAGAIV 413

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSWTGEKIDLSRERAK 117
                             L  I   +   I           +  ++   + +    E  +
Sbjct: 414 TGFLSLAKNRPLNQKPHNLNAIISSLLPLIQADALTGDKYVQANLNEVPDLLLDENEIRQ 473

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           ++LNL      ++   G++T++      E + +++  G          +I    V +   
Sbjct: 474 LILNLARNGLEAMSASGRLTLNTFMDGGEVVLAVQDQGPGIEPG-LVDKITRPFVTNKEQ 532

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +A ++   +  E              
Sbjct: 533 GTGLGLAVCDSIAAQHNATMTFETSP-AGTTFYVRFP 568


>gi|149280459|ref|ZP_01886578.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
 gi|149228771|gb|EDM34171.1| sensory box histidine kinase/response regulator [Pedobacter sp.
           BAL39]
          Length = 769

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 56/210 (26%), Gaps = 18/210 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVM----------QLIRLSSMSAIIRLKFMRLAFG 72
            H++ +P+ ++  SL+LL+ +  +   +          + +   S      L   R+  G
Sbjct: 557 SHELKTPLTSLKASLQLLERMKDQPNPLSFPRLITQAAKSMDKISELVDDLLNVSRINEG 616

Query: 73  YTGSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                     + D+                 +Q +   +         ++L+NL   A  
Sbjct: 617 QMLIRKDWFDIDDLLHSCCATFRENSGKQFPIQTTAGLKVFADEHRIEQVLVNLISNAIK 676

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID----SHDIQFY 184
             P    + +      +     ++ NG      +            +         +  Y
Sbjct: 677 YAPESAVINLIAVQISSSVKVEVRDNGPGISQEKIPHLFDRYYRGDSSGIQVSGLGLGLY 736

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   +   +  E   +        L 
Sbjct: 737 ISADIVRRHGGEIGVESRLNEGSTFWFTLP 766


>gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
 gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator,
            hybrid [Microscilla marina ATCC 23134]
          Length = 1338

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 59/239 (24%), Gaps = 26/239 (10%)

Query: 2    AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
             +       +  L  +        S + H++ +P+  I    E +             + 
Sbjct: 808  QQKEEIASQAEKLKEMDQIKSHFFSNVSHELRTPLTLIIGPAEQILHSAESTTTQSHSKS 867

Query: 56   SSMSAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRV 100
               +A   LK +     ++                 V     +   E +        K +
Sbjct: 868  ILSNAQRLLKLINQLLDFSKLESGKLILQLKTGKFHVFLKNIIYSFELLANQKNIGLKLL 927

Query: 101  QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                         +  K+  NL   A    P  G VTI V+  +      +   G     
Sbjct: 928  LHQEEIMGEFDHDKLEKVFFNLLSNALKFTPENGLVTIEVKQKEEMVQIKVSDTGIGIPP 987

Query: 161  ---PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               P  F +     G+   T +   I    V  L   +   +      D        L 
Sbjct: 988  QSLPFIFDRFYQVDGSQTRTHEGTGIGLSLVKELLELHGGNIKASSEVDKGTTFFIQLP 1046


>gi|51245738|ref|YP_065622.1| Pho family two-component system sensor histidine kinase
           [Desulfotalea psychrophila LSv54]
 gi|50876775|emb|CAG36615.1| related to two-component system sensor histidine kinase (Pho
           family) [Desulfotalea psychrophila LSv54]
          Length = 602

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +PI AI   +E L +  ++        + ++   S      +  +     
Sbjct: 377 FVANVSHELRTPITAIRGYVETLLDGALDQKEDARRFLAIVLRQSSRLSDIINDLLALSR 436

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KIL 119
                 +     + + +     A  +  Q+    + I L                  + L
Sbjct: 437 IELDSSTDNIELEEQHICSVVRAALQTCQIDAEQKGIILQLHCPEDIRVPLNPHLIEQAL 496

Query: 120 LNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--V 172
           +NL + A    P   ++ + V   +   E   S+  +G        P  F +    +   
Sbjct: 497 VNLIVNAVRYSPEKSEIRVEVLACEEGQEVSISVADDGCGIGAEHLPRVFERFYRSDKAR 556

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    +    V  +   +  R+     +      S  L 
Sbjct: 557 SRELGGTGLGLAIVKHIVQAHNGRVAVNSEEGVGTEFSFFLP 598


>gi|254426378|ref|ZP_05040094.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196187792|gb|EDX82758.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 515

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLS 56
           A      L  + L           I H++ +PI  I   LE+L      + E + L+   
Sbjct: 237 ATTFNAMLDRLQLAFNVQQEFLKDISHELRTPITVIQGQLEMLPYRPEKQPETIALVTSE 296

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTGEK 108
                  +  + L          ++   D++ + E+            + +++       
Sbjct: 297 LAQMDRLVNDLTLLTKAERPDFLILKPEDLDWLTEELYLKARTLSDERNWQLETKGLYPA 356

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               +  ++ ++NL   A      G  + +    +     F +   G      ++  +I 
Sbjct: 357 TIDKQRFSQAVMNLVQNAVRHTQPGDTIALGSLATDGYLQFWVSDTGEGVATADQS-RIF 415

Query: 169 DGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +   +    V  +   +  R+            + ++ 
Sbjct: 416 KRFARATNNNRQFEGAGLGLSIVSAIVQAHGGRIELTSKLGQGSTFTLIVP 466


>gi|182625795|ref|ZP_02953562.1| sensor histidine kinase [Clostridium perfringens D str. JGS1721]
 gi|177908951|gb|EDT71438.1| sensor histidine kinase [Clostridium perfringens D str. JGS1721]
          Length = 473

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60
              ++   L   I H++ +P+  I + LE + +   E    +L+ +   +          
Sbjct: 248 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 307

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
               K+   +        ++  +          +A  + +++ +  + I+L  ++    +
Sbjct: 308 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSRNIKIEYEKKNINLYCDKDKITQ 367

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
            L+N+   A      G  + I  +   N+ I S++  G      +    F +    +   
Sbjct: 368 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 427

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I    V  +   +   +  E         + +L K
Sbjct: 428 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 470


>gi|168216704|ref|ZP_02642329.1| sensor histidine kinase [Clostridium perfringens NCTC 8239]
 gi|182381212|gb|EDT78691.1| sensor histidine kinase [Clostridium perfringens NCTC 8239]
          Length = 467

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60
              ++   L   I H++ +P+  I + LE + +   E    +L+ +   +          
Sbjct: 242 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 301

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
               K+   +        ++  +          +A  K +++ +  + I+L  ++    +
Sbjct: 302 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 361

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
            L+N+   A      G  + I  +   N+ I S++  G      +    F +    +   
Sbjct: 362 ALVNILSNAIRYSNEGSTIFIEERLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 421

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I    V  +   +   +  E         + +L K
Sbjct: 422 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 464


>gi|206969280|ref|ZP_03230235.1| sporulation kinase A [Bacillus cereus AH1134]
 gi|206736321|gb|EDZ53479.1| sporulation kinase A [Bacillus cereus AH1134]
          Length = 510

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNEGTIVDIELP 500


>gi|162453632|ref|YP_001615999.1| two-componenthybrid sensor histidine kinase [Sorangium cellulosum
           'So ce 56']
 gi|161164214|emb|CAN95519.1| two-componenthybrid sensor histidine kinase [Sorangium cellulosum
           'So ce 56']
          Length = 692

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 26/234 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLI 53
           A+     L    L   +     HD+ +P+ +I  +  LL+             +   Q+ 
Sbjct: 461 AEQRARRLREEALA--IA---AHDLRNPLSSIILAASLLERSAPADAGGQPIRNRARQIK 515

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWT 105
           R +  +  +  + +  A      +   I   +         E +         ++     
Sbjct: 516 RAAERAVEMLGELLDAAIIEAKGLKLDIQPCEVGSLVREVTEMLAPLAEQKRIQLHTLLP 575

Query: 106 GEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           G             ++L NL   A      G ++TI  +        S+   G   R  +
Sbjct: 576 GSGLELSCDRGRMLQVLSNLVGNALKFTAEGREITIGAERQGPHVRLSVSDTGTGIRPED 635

Query: 163 KFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +      +  Y V  +   +  ++  +         S  + 
Sbjct: 636 IPRLFDRYWQGRAARCAGAGLGLYIVKGIVEAHGGQISVDSELGAGTTFSCTIP 689


>gi|315919855|ref|ZP_07916095.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313693730|gb|EFS30565.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 632

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + + +     +  L +   + + H+I +P+ AI     +L   +      E   LI  ++
Sbjct: 399 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVENREEMSEYADLIETNT 458

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
              +  +                Y   +D    L +IEQ ++  +  +            
Sbjct: 459 DLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTCTFVERLPE 518

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N  + A      G               F +   G      E+  
Sbjct: 519 CTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCGM-SSEQCI 577

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      S +    +       +      ++  E  ++        L 
Sbjct: 578 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628


>gi|260171541|ref|ZP_05757953.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 654

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + + +     +  L +   + + H+I +P+ AI     +L   +      E   LI  ++
Sbjct: 421 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVENREEMSEYADLIETNT 480

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WT 105
              +  +                Y   +D    L +IEQ ++  +  +            
Sbjct: 481 DLLLQLINDILDLSKIEAGTFDFYPALIDVNRTLEEIEQSMQLRLRHNNVTCTFVERLPE 540

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N  + A      G               F +   G      E+  
Sbjct: 541 CTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCGM-SSEQCI 599

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      S +    +       +      ++  E  ++        L 
Sbjct: 600 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650


>gi|149189097|ref|ZP_01867385.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148837060|gb|EDL54009.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 792

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 65/235 (27%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        ++ +  +   + + H+I +P+  +    ++L++   +    ++++L   S 
Sbjct: 409 LTNTARDANAANEAKSAFLATMSHEIRTPMNGVLGLTQILEKEITDPNHREVLQLILSSG 468

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +      +   +  + L      + + ++  K    S                 
Sbjct: 469 NHLVSILNDILDISKIENEALTLEHSPFKMIEILSPVKNTYQSLCSEKGLLFEVIDNTPP 528

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             + I       +ILLNL   A     +G  V     +      F +K  G         
Sbjct: 529 YTQFIGDEVRLRQILLNLVGNALKFTQKGSIVISVEVNVGGMCRFEVKDTGIGITPDRLD 588

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                    +    V  L       +L +         + LL 
Sbjct: 589 SVFEKFEQAEASTTRQFGGTGLGLSIVKSLVELMGGEILVDSKVGRGSTFTVLLP 643


>gi|302392132|ref|YP_003827952.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
 gi|302204209|gb|ADL12887.1| multi-sensor signal transduction histidine kinase [Acetohalobium
           arabaticum DSM 5501]
          Length = 617

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 18/222 (8%), Positives = 62/222 (27%), Gaps = 21/222 (9%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           + +   S + H+  +P+ +++  + +L      +    + E++++ +         +  +
Sbjct: 393 MKSEFVSMVSHEFRTPLTSMNMGINMLLEENIGEINEEQKELLEVAKEDCEHLNNLVDDL 452

Query: 68  RL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                           +V          Q             ++     +++  +  KI 
Sbjct: 453 LDLSKIESGEIDLEFDAVAVKKIFEASIQPFMTQAEEQGVDLITEETNGLEVYADFNKIT 512

Query: 120 LNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----GNV 172
             +      A     +G K+ +      ++   S+   G       +          G+ 
Sbjct: 513 WVITNLIGNALRYTGKGDKIKLLADKKGHKMHISVADTGEGIPKEYRHKIFKKFVRVGDD 572

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +       +   +  R+  E       + +  L+
Sbjct: 573 KDEETGTGLGLAISKEIIEAHGGRIWVESEVGEGSIFTFTLK 614


>gi|288556614|ref|YP_003428549.1| signal transduction histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547774|gb|ADC51657.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus pseudofirmus OF4]
          Length = 580

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 63/222 (28%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +        +++   L + I H+I +P+ AI    +L      ++   ++I         
Sbjct: 349 EKEMIRSEKLNIAGQLAAGIAHEIKNPLTAIKGFYKLFKLNMGKEFYYKIIDDELNRIEQ 408

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTGEKIDLSR 113
                        +V  +  +  I Q ++             +   +Q S          
Sbjct: 409 IANEFLALSKPHSNVFEVHSISKIIQEVKTLLETEAILKGNEIITSLQKSDELFIYCEET 468

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  ++ +NL   A  +    G + I+ +        S++  G          ++ +    
Sbjct: 469 KMKQVFVNLIKNAIEATTN-GHIFITTKLRGENVEISIQDQGCGISETTLK-KVGEPFFT 526

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +      +       +   +      E  +     ++    +
Sbjct: 527 TKETGTGLGLLICDKIIDTHNGTRSIESQEGVGTKVTIRFPR 568


>gi|228957711|ref|ZP_04119455.1| hypothetical protein bthur0005_12270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229144043|ref|ZP_04272459.1| hypothetical protein bcere0012_12060 [Bacillus cereus BDRD-ST24]
 gi|296502020|ref|YP_003663720.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|228639440|gb|EEK95854.1| hypothetical protein bcere0012_12060 [Bacillus cereus BDRD-ST24]
 gi|228801954|gb|EEM48827.1| hypothetical protein bthur0005_12270 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296323072|gb|ADH06000.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 402

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 65/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A         L    ++         +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQILQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|149919622|ref|ZP_01908101.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149819565|gb|EDM78993.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 1928

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 29/233 (12%)

Query: 10   SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK 65
              ++ +  L S + H+I +PI  I N  ELL     +    DE  + I   S      ++
Sbjct: 1683 QRLESIGTLASGVAHEINNPIQGIRNYAELLRGESCDEATVDEFAREIIHESERVTTFVR 1742

Query: 66   FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------GEKIDLSR 113
             +       GS  +        + + D  ++  +  +                +     +
Sbjct: 1743 GLLTFARREGSEQAPALERVAPRELVDASSLLVKTILRRDGVELRTRFAPALPQVPCRPQ 1802

Query: 114  ERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +  ++L+NL   A  +          +    +V    ++      F ++  G       +
Sbjct: 1803 QIQQVLMNLVTNARDALVEAELPRERMTLELEVDACEREGATWVRFQVRDRGPGIPESAR 1862

Query: 164  FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              Q+ D    +        +       +A E+  RL  E         +  L 
Sbjct: 1863 -AQLFDPFFTTKARDKGTGLGLAISHGIATEHGGRLSFETELGVGTCFTLELP 1914


>gi|118478878|ref|YP_896029.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|229185874|ref|ZP_04313047.1| hypothetical protein bcere0004_34220 [Bacillus cereus BGSC 6E1]
 gi|118418103|gb|ABK86522.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           thuringiensis str. Al Hakam]
 gi|228597586|gb|EEK55233.1| hypothetical protein bcere0004_34220 [Bacillus cereus BGSC 6E1]
          Length = 516

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEIDEEHKWYIDVMLSE 340

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 341 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506


>gi|167647511|ref|YP_001685174.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167349941|gb|ABZ72676.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 702

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 73/233 (31%), Gaps = 21/233 (9%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            +++   L  +  + A+  L   + HD  + +  I  ++EL+     ++  +     +  
Sbjct: 296 RRDLEEALVQARKMEAVGQLTGGVAHDFNNLLTVILGNIELIQRRSGDEHPLARHVAAVR 355

Query: 59  S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R       +VD +  + +   ++   +     + +      + 
Sbjct: 356 QAAERGGALTRQLLAFSRRQRLDPATVDIIDLVREFTPLLRQAVGEAVTIDLEIGATPVW 415

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEK 163
           +  + A++   L      A  ++  GG ++IS +   +      + S++  G      E 
Sbjct: 416 VHVDAAQLESALLNLAVNARDAMDAGGVLSISARVEASAGAALAVISVRDTGPGM-SEEI 474

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +++ +    +        +    V     ++   +               L 
Sbjct: 475 ASRVFEPFFTTKEVGKGSGLGLSQVYGFVRQSGGEITLRSAPGQGATFEIRLP 527


>gi|330505536|ref|YP_004382405.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
 gi|328919822|gb|AEB60653.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina NK-01]
          Length = 1277

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 66/233 (28%), Gaps = 24/233 (10%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
                 +  M       S + H++ +P+ AI  SL L+       +   + Q++ ++  ++
Sbjct: 1041 TERKRIEQMK--NEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQTMRQMLAIAHSNS 1098

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED--------------FIAVDKRVQVSWTG 106
            +     +         V   +      ++++                  V+ R+QV    
Sbjct: 1099 LRLSALINDLLDMEKLVAGKMQFDLQARLMQPLLEQALLHNQPYAEQHQVELRLQVEDDA 1158

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 ++  A+++ NL   A    P GG V + +Q        S+  NG       K   
Sbjct: 1159 LVNVDTQRLAQVMANLLSNAAKFSPPGGNVVVCLQTLGEALRVSVSDNGPGIPEAFKPRI 1218

Query: 167  IVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +       +      ++  +            L 
Sbjct: 1219 FSKFSQADSGDTRQQGGTGLGLAICKEIIERMGGQIGFDSSPGQGATFWFELP 1271


>gi|315920397|ref|ZP_07916637.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694272|gb|EFS31107.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1308

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 774  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 831

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 832  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 891

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R +I   +      A      GG + + + D   E +FS+  NG      +   
Sbjct: 892  CLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVK 951

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 952  IFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1004


>gi|311031362|ref|ZP_07709452.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 589

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 72/221 (32%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L +  + D       + +I   S      ++ +     
Sbjct: 364 FVANVSHELKTPITSIKGFSETLLDGAMNDKDTLEYFLSIILKESDRLQSLIEDLLDLSK 423

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RERAKILL 120
             +  F        +  L +   VI +  A +K + +  +  K +L          ++ +
Sbjct: 424 IEKQGFRLNPQYLEINELLEEIFVILEGKAREKEIDLVLSKPKKELYLFADASRIKQVFI 483

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A A  P GG+V + V++   E +  +   G      E   +I +           
Sbjct: 484 NLINNAIAYTPAGGEVKVKVEEVDKEVVIVVSDTGIGMEQDEIP-RIFERFYRVDKARSR 542

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  +   +   +      +     +  L K
Sbjct: 543 NSGGTGLGLAIVKHIVEAHHGSISVTSELNKGTAFTVKLSK 583


>gi|302342593|ref|YP_003807122.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
 gi|301639206|gb|ADK84528.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
          Length = 1211

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 63/244 (25%), Gaps = 32/244 (13%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVM 50
             K +   L  +  + A+  L   I HD  + + AI  + EL  +   +        ++++
Sbjct: 826  TKRLEAQLRQAQKMEAIGTLAGGIAHDFNNILTAISGNAELALDRARQGAATPAELEKIL 885

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 +       + F R    +   ++    + D   +IE  I     V++        
Sbjct: 886  GAADRARRLIKKIMFFSRKVEFHPQPLNLNKVVTDAVSIIERAIPKMISVELRLEPTPWT 945

Query: 111  LSRERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLK 152
            +  +  ++   +      A  ++                     +     + +    ++ 
Sbjct: 946  IKGDATQLEQIILNLASNAQDAMQNGGRLIIETANVCLDEKDAASHFHMAAGDYLRLTVS 1005

Query: 153  INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              G           I +    +        +    V      +   +          V  
Sbjct: 1006 DTGVGI-DKHILEHIFEPFYTTKEIGKGTGMGLASVYGAVQNHGGHIYCYSEPGQGTVFK 1064

Query: 211  ALLE 214
              L 
Sbjct: 1065 CYLP 1068


>gi|262401994|ref|ZP_06078559.1| osmolarity sensory histidine kinase EnvZ [Vibrio sp. RC586]
 gi|262351966|gb|EEZ01097.1| osmolarity sensory histidine kinase EnvZ [Vibrio sp. RC586]
          Length = 438

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 63/213 (29%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124
           +++           L  +       E    V     +               + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQADLTPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K      ++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|260172086|ref|ZP_05758498.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1341

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 807  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 865  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R +I   +      A      GG + + + D   E +FS+  NG      +   
Sbjct: 925  CLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVK 984

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 985  IFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037


>gi|297568853|ref|YP_003690197.1| GAF sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924768|gb|ADH85578.1| GAF sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 577

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 67/244 (27%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL----IR 54
            + +   L  +  + AL  L   I HD  + +  I  + ++      ++ +++     I 
Sbjct: 181 RQQMEDQLFQARKMEALGILAGGIAHDFNNILTPILINAQMAKLEARDNPILEQSLQQIE 240

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGE 107
            ++  A   ++ +             I LG          +         +  +      
Sbjct: 241 QATERAGALIQQILDFNRQGKHEPQPIQLGPIIKEALKFLRSTVAPNIEMEYTKKVDHDM 300

Query: 108 KIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152
                 +  ++++NL + A  ++                         +  ++     ++
Sbjct: 301 VAADPTQMLQVIMNLALNAAYAMRDSGGRLEIELNAGDRLPPVAAPDAEQQESWLKMVVR 360

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            +G     PE   +I D    +    +   +    V  +   +   +             
Sbjct: 361 DHGPGIN-PEHLHRIFDPFFTTKGKGEGSGMGLAVVHGIVSNHGGTINCYSQPGQGATFE 419

Query: 211 ALLE 214
            LL 
Sbjct: 420 ILLP 423


>gi|237719620|ref|ZP_04550101.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229450889|gb|EEO56680.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1341

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLS 56
             K     ++   L     + I H+I +PI  I   ++LL   G          + + + +
Sbjct: 807  EKQYIEEMNQSKLR--FFTNISHEIRTPITLILGQVDLLLNSGKLSTYAYSKLLNIHKNA 864

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  + +       G +   +                 E     +    +    E+
Sbjct: 865  GNLKSLITELLDFRKQEQGLLKLKVSQFDLYSLLKEHYVLFKELAANRNISFVLHADCEQ 924

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +  +R +I   +      A      GG + + + D   E +FS+  NG      +   
Sbjct: 925  CLVWGDRMQIQKVVNNLLSNAFKYTSDGGTIRMELADGTEECMFSVSDNGAGISEEDYVK 984

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +              I       +   ++  +  E            L+K
Sbjct: 985  IFERFYQVENIGQYGGTGIGLALSQGIVKAHQGDITVESQLGKGSCFKVTLKK 1037


>gi|229111063|ref|ZP_04240622.1| hypothetical protein bcere0018_33100 [Bacillus cereus Rock1-15]
 gi|228672426|gb|EEL27711.1| hypothetical protein bcere0018_33100 [Bacillus cereus Rock1-15]
          Length = 490

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 255 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 314

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 315 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 374

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 375 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 433

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  RL      +   ++   L 
Sbjct: 434 GEPFYSLKEKGTGLGLMMCYKIIEEHHGRLHISSELNKGTIVDIELP 480


>gi|17548102|ref|NP_521504.1| two-component sensor kinase KDPD transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17430409|emb|CAD16882.1| probable two-component sensor kinase kdpd transcription regulator
           protein [Ralstonia solanacearum GMI1000]
          Length = 937

 Score =  115 bits (288), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55
           A++    + S  L   L + + HD+ +P+  +    E L         +Q      +   
Sbjct: 691 AQDALLRIESERLRNSLLAAVSHDLRTPLTGLAGMAETLLRTQPPLSPLQAEAAEAIGEQ 750

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTGEK 108
           +     +    + +A      V   +    IE++                   ++     
Sbjct: 751 AQRMRAMVTNLLDMARLQNHDVKLRLEWQSIEELVGAALKGTPLPTHAVVVDDLADLPLL 810

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPE- 162
                   ++L NL   A    P G +V I           +E    ++ +G        
Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISAGVVHDAAHGDEMCVRVRDHGPGVPAGAE 870

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G+ ES      +       +   +  R+  E   D        L 
Sbjct: 871 RVIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPADGGACFVVALP 924


>gi|327395665|dbj|BAK13087.1| sensor protein KdpD [Pantoea ananatis AJ13355]
          Length = 497

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 58/227 (25%), Gaps = 18/227 (7%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56
             +     L   L S + HD+ +P+  +    E+L                ++ +    +
Sbjct: 258 RLSAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASDNSKYVPQASQIREQTLST 317

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  L   R+  G     +       +              + V++    + + +  
Sbjct: 318 IRLVSNMLDMARIQSGGLNLREEWLALEEVIGGALSSMAPSLKGREVELDLPEDIVLIKG 377

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +     ++  NL   +           I           ++   G      +    F + 
Sbjct: 378 DSTLLERVFTNLIENSLKYAGNCAPRGIRAWCENTRLEIAIWDGGPGIAQNDLTRIFDKF 437

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             G+ ES +    +       +   +  ++  E   +        L 
Sbjct: 438 SRGDKESAVPGVGLGLAICKTIIESHGGQIWAENRAEGGACFRLSLP 484


>gi|225870884|ref|YP_002746831.1| sensor histidine kinase [Streptococcus equi subsp. equi 4047]
 gi|225700288|emb|CAW94548.1| sensor histidine kinase [Streptococcus equi subsp. equi 4047]
          Length = 450

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 67/224 (29%), Gaps = 26/224 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAIIRLKFMR 68
           L  S + H++ +P+ ++ + LE LDE  +++++        +             L   R
Sbjct: 211 LFVSNVSHELRTPLTSVKSYLEALDEGALKEDIAPSFIKVSLDETNRMMRMISDLLNLSR 270

Query: 69  LAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDLSRE---R 115
           +    T     +                             +   +    I L  +    
Sbjct: 271 IDNHVTQLSVEMTNFTAFMTSILNRFDLVKNQHTSTGKSYEIVRDYPITSIWLEIDNDKM 330

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
            +++ N+   A    P GGK+ ++++ +  + I S+   G      +    F +    + 
Sbjct: 331 TQVIENILNNAIKYSPDGGKIIVNMKTTDTQLIISISDEGLGIPKKDLPLIFDRFYRVDK 390

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +  + +  +  +         + +L 
Sbjct: 391 ARSRAQGGAGLGLAIAKEIIKQRRGFIWAKSDYGKGSTFTIVLP 434


>gi|116873948|ref|YP_850729.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742826|emb|CAK21950.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 459

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + D+              
Sbjct: 227 KMASELEKSETARQEFVANVSHELQSPLTSMQGFARLLSSGTLTDKEQAEYLTVLSEETA 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P+ G + + + +        ++ NG      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQVRLYEKATNVFVEVQDNGVGISKTDMAKIFE 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   ++ +   +     +  L K
Sbjct: 407 RFYKSNQSRTREEGSSGLGLSICQKIIALHHGEIIVKSTPEKGTTFTVKLPK 458


>gi|39998228|ref|NP_954179.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39985174|gb|AAR36529.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298507165|gb|ADI85888.1| response receiver histidine kinase [Geobacter sulfurreducens KN400]
          Length = 484

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
           +I        +   + S + H++ +P+ A+    E L     +  ++   ++ I   +  
Sbjct: 252 DITERKEMERMKDEMISAVSHEMHTPLTAMMGFTEFLLENEVDRDLQKNYLKTIYRETER 311

Query: 60  AIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               +               +  +  ++  L      +    +   R+ V    +   + 
Sbjct: 312 LNELITNFLQLQRLKASMVKFRITPVAVGLLVADVVSLYAAASKKHRIVVECPPDLPPVR 371

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
               ++   +      A    P GG VTI    + +     ++  G           F +
Sbjct: 372 GNEEQLYQAISNLVSNAIKYSPDGGDVTIGASAAADIVTLWVRDQGIGISPEFQEKIFER 431

Query: 167 IVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +    +    V  +   +  R   E            L 
Sbjct: 432 FFRVDNSDRRKVGGAGLGLTLVREIVATHGGRSWVESSPGKGSTFFISLP 481


>gi|328951449|ref|YP_004368784.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328451773|gb|AEB12674.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 429

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 65/222 (29%), Gaps = 12/222 (5%)

Query: 1   MAKNICFNL------SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           +A+ +   L         +  AL  + + H++ +P+  +   LE L E    D  +   R
Sbjct: 200 LAQALNQALENIRARQQAERAAL--AEVAHELAAPLSLVAGHLESLAETHAGDARLLAAR 257

Query: 55  LSSMSAIIRLKFMRL--AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            ++   +   + +           ++  +                  + V    E     
Sbjct: 258 DAARELLYTSQDLLTLARGELERPLELRVFDLAEVAARVAREYPGVALAVEGPAEVAGSP 317

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +++ NL   A  +      V +++  ++ E    ++  G      E   ++ +   
Sbjct: 318 ERMTQLVRNLVRNAVQASGGTAGVRVALWATEEEVYLEVRDQGPGIPPEELP-RVFERFY 376

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +A ++   +            + +L 
Sbjct: 377 TRR-GGAGLGLSVAQRIARQHGGEIRVASEVGKGSRFTVVLP 417


>gi|323464229|gb|ADX76382.1| alkaline phosphatase synthesis sensor protein PhoR [Staphylococcus
           pseudintermedius ED99]
          Length = 566

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 22/224 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            +L +   + + H++ +PI ++    E L +    DE      + +I   S      ++ 
Sbjct: 343 ENLRSEFVANVSHELKTPITSMKGFTETLIDGAKNDEASLDLFLNIILKESNRIQSLVED 402

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERA 116
           +        +      L D+  V +   +V + +          Q+      +    + +
Sbjct: 403 LLDLSKIEQNTTLEKHLIDLSDVAKSSFSVIQPLANEKSIQLIDQIEPNVTAMADENKIS 462

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           ++++NL   A    P    VT++V       +  +   G      EK+ +I +       
Sbjct: 463 QVIVNLMTNAVNYSPENRTVTLAVYRENQHPVIEVIDQGIGIGEKEKY-RIFERFYRVDK 521

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +    +  +              +L 
Sbjct: 522 ARSRDSGGTGLGLSITKHIIEAYQGNIEVASELGKGSRFKVVLP 565


>gi|319892739|ref|YP_004149614.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162435|gb|ADV05978.1| Phosphate regulon sensor protein PhoR/SphS [Staphylococcus
           pseudintermedius HKU10-03]
          Length = 566

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 22/224 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            +L +   + + H++ +PI ++    E L +    DE      + +I   S      ++ 
Sbjct: 343 ENLRSEFVANVSHELKTPITSMKGFTETLIDGAKNDEASLDLFLNIILKESNRIQSLVED 402

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTGEKIDLSRERA 116
           +        +      L D+  V +   +V + +          Q+      +    + +
Sbjct: 403 LLDLSKIEQNTTLEKHLIDLSDVAKSSFSVIQPLANEKSIQLIDQIEPNVTAMADENKIS 462

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           ++++NL   A    P    VT++V       +  +   G      EK+ +I +       
Sbjct: 463 QVIVNLMTNAVNYSPENRTVTLAVYRENQHPVIEVIDQGIGIGEKEKY-RIFERFYRVDK 521

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +    +  +              +L 
Sbjct: 522 ARSRDSGGTGLGLSITKHIIEAYQGNIEVASELGKGSRFKVVLP 565


>gi|15893609|ref|NP_346958.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023161|gb|AAK78298.1|AE007546_4 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507731|gb|ADZ19367.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 498

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +++       +    L S I HD+ +PI +I   +E + +      E M+    +  +
Sbjct: 255 LKESVELQAQYENNRKELISNISHDLKTPITSIKGYIEGIRDGVADTPEKMEKYVNTIYN 314

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
               + ++         +D          +       D   +  +  EK ++        
Sbjct: 315 KTQSMNYLIEELLTYSKLDLKKLPFYFIDMDFVSYMNDLMEEFKFDVEKNNMEFSYDNHI 374

Query: 116 -------------AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF- 160
                         +++ N+   +   + +  GK+++ V  +  E +  +K NG      
Sbjct: 375 KGKANVRIDVQNINRVISNIISNSIKYMDKEHGKISVEVDSNNEEVLVGIKDNGMGISEE 434

Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214
             P  F +    +           +       +  E+   +  +    H      S  L+
Sbjct: 435 ALPYVFDRFYREDFSRNTSKGGSGLGLAICKKIIEEHGGSIWAKSQKGHGTEIWFSIKLK 494


>gi|262382892|ref|ZP_06076029.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295770|gb|EEY83701.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 1021

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA++      S  L +   + + H+I +P+ AI     +L      ++  +   +   + 
Sbjct: 647 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDDLEDKKEFADIIENNN 704

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +   + Y      L  L     +      V    +     
Sbjct: 705 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 764

Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A      G  +        N   F ++  G      ++  
Sbjct: 765 CVIYTDRNRLSQLMINLLNNAMKFTQAGSILFGYKLKDDNTLWFYVEDTGCGIPENKRKD 824

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +      ++  + K  +  + ++         L 
Sbjct: 825 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSMEGKGSKFWFTLP 874


>gi|196231886|ref|ZP_03130742.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224008|gb|EDY18522.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 672

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 15/232 (6%), Positives = 54/232 (23%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L   +   L+  L   I H++ + +  +    E+L     ++  +        
Sbjct: 289 QRRLEQRLQQKEKSVLLDTLAGGIAHELNNKLLPVLGYAEMLQLRARDNMELSGWCDVIR 348

Query: 59  SAI----IRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKI 109
            +          +               L       +  +      +     +      +
Sbjct: 349 QSTVEAAELTGQLLQLSRPPALEPRACDLVAIVHAAMNMLRFRLRELSCEPVLDLPARLV 408

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKF 164
            L  + A++   +  +   ++                   +     ++  G+        
Sbjct: 409 PLHADPAQLKQVIVNLCFNAIDAMSGGDRPRLHLSLLDEDDGVCLRVQDAGSGIPEECLP 468

Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +  ++   +  E         +  L 
Sbjct: 469 -RIFDPFFTTKGVQQGTGLGLSVCFSIIQQHGGTIEVESTGPEGTTFAIWLP 519


>gi|170764235|ref|ZP_02638867.2| sensor histidine kinase [Clostridium perfringens CPE str. F4969]
 gi|170715233|gb|EDT27415.1| sensor histidine kinase [Clostridium perfringens CPE str. F4969]
          Length = 423

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60
              ++   L   I H++ +P+  I + LE + +   E    +L+ +   +          
Sbjct: 198 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 257

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
               K+   +        ++  +          +A  K +++ +  + I+L  ++    +
Sbjct: 258 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 317

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
            L+N+   A      G  + I  +   N+ I S++  G      +    F +    +   
Sbjct: 318 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 377

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I    V  +   +   +  E         + +L K
Sbjct: 378 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 420


>gi|110798722|ref|YP_697021.1| sensor histidine kinase [Clostridium perfringens ATCC 13124]
 gi|110673369|gb|ABG82356.1| sensor histidine kinase [Clostridium perfringens ATCC 13124]
          Length = 310

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60
              ++   L   I H++ +P+  I + LE + +   E    +L+ +   +          
Sbjct: 85  EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 144

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
               K+   +        ++  +          +A  K +++ +  + I+L  ++    +
Sbjct: 145 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 204

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
            L+N+   A      G  + I  +   N+ I S++  G      +    F +    +   
Sbjct: 205 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 264

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I    V  +   +   +  E         + +L K
Sbjct: 265 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 307


>gi|18311313|ref|NP_563247.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|168210365|ref|ZP_02635990.1| sensor histidine kinase [Clostridium perfringens B str. ATCC 3626]
 gi|18145996|dbj|BAB82037.1| two-component sensor histidine kinase [Clostridium perfringens str.
           13]
 gi|170711535|gb|EDT23717.1| sensor histidine kinase [Clostridium perfringens B str. ATCC 3626]
          Length = 467

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60
              ++   L   I H++ +P+  I + LE + +   E    +L+ +   +          
Sbjct: 242 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 301

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
               K+   +        ++  +          +A  K +++ +  + I+L  ++    +
Sbjct: 302 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 361

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
            L+N+   A      G  + I  +   N+ I S++  G      +    F +    +   
Sbjct: 362 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 421

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I    V  +   +   +  E         + +L K
Sbjct: 422 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 464


>gi|323698747|ref|ZP_08110659.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323458679|gb|EGB14544.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 305

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLI 53
              + S  ++AL  L + I H+I +P+  I    EL+                   + +I
Sbjct: 73  EQLIQSQRVLALGELSTGIAHEINNPLNIILQEAELMRYDLALAPTAETMEEVRSSLDVI 132

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEK 108
                        +         V     +  + + +      +    +  +    + + 
Sbjct: 133 YAQVSRCSDITHKLLDLARNRKPVSQPADINRLVEDMLELVEREAGPREIHLHRRLSQDL 192

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +     +++LNL + A  ++ + G + I+     N     ++  G      E   
Sbjct: 193 PTVISDPPLLRQVILNLLINAIQAVDKDGDIFITTHREGNMAYTEIRDTGPGI-SEENRK 251

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +        +     + + +E    +            +  + 
Sbjct: 252 RIFNPFFTTKAPGQGTGLGLSVSLRIINELGGDIQVASAPGKGATFTVRIP 302


>gi|302036149|ref|YP_003796471.1| putative sensor protein PilS [Candidatus Nitrospira defluvii]
 gi|300604213|emb|CBK40545.1| putative Sensor protein PilS [Candidatus Nitrospira defluvii]
          Length = 619

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 24/224 (10%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           L  L  + + + H+I +P+GA+  ++++L +  G +D   +L+ ++   A      +   
Sbjct: 377 LANLGEMSAGMAHEIRNPLGALAGAMQMLRQDVGSDDTSQRLMDIAIREARRLDNIITEF 436

Query: 71  FGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERAKI 118
             Y           D    L D   +I+        + +                +  ++
Sbjct: 437 LQYARPPALNLAEHDLNKVLADTLDLIQHEARSRTGITIVSRMAPNQLMAQVDQDQLKQV 496

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNEN--------IFSLKINGNLARFPEKFTQIVDG 170
             NL   A  ++  GG +TI+    + E           + + NG      + F +I   
Sbjct: 497 FWNLATNAFDAMSAGGTLTIATGSRQVEVGGRRSDVIEIAFQDNGEGI-PKQNFDKIFLP 555

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +    V  +   ++  +  E    H       L 
Sbjct: 556 FFTTKKEGSGLGLAQVHRIVELHEGWIKVESEIGHGARFVVCLP 599


>gi|295112251|emb|CBL29001.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [Synergistetes bacterium SGP1]
          Length = 513

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 62/223 (27%), Gaps = 18/223 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
               L   L + + H++ +P+  + + +E + +       E + L           ++ +
Sbjct: 264 EQERLRQRLMTDVVHELRTPLTVVRSQIEAIADGVWEASPERLALCVSEMERLSGLIRDV 323

Query: 68  RLAFGY--------TGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERA 116
                            VD    L  +               R  ++ +           
Sbjct: 324 ESVTRMEGDAVAIKPEPVDLSAFLSSVLDAFRPLFGRTGVALRRSLAPSLHAEVDEDRFR 383

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
            ++ NL   A    P+GG V + ++   +E +  ++ +G+     +    F +    +  
Sbjct: 384 HVMDNLLSNALRYTPKGGWVEVRLRRRGDEAVIEVQDSGSGISPQDLPHVFDRFYRADES 443

Query: 174 ST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +   +   +  E         +  L 
Sbjct: 444 RARVTGGRGVGLSIARAVVEAHGGTIGVESESGVGSCFTVTLP 486


>gi|229077963|ref|ZP_04210572.1| hypothetical protein bcere0023_6530 [Bacillus cereus Rock4-2]
 gi|228705301|gb|EEL57678.1| hypothetical protein bcere0023_6530 [Bacillus cereus Rock4-2]
          Length = 463

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFFTRIAEKVNAMYKERYIKVSFSCPPTLLVNLDEQRFEQVIV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ +       +++  G      +                 +
Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHDGNITVTSEVDYGSCFIISLP 454


>gi|182678949|ref|YP_001833095.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634832|gb|ACB95606.1| multi-sensor hybrid histidine kinase [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 847

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 69/236 (29%), Gaps = 31/236 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   + HD  + + AI    +LL           + +  I+ ++  A   
Sbjct: 470 QSQKMQAIGQLAGGVAHDFNNVLTAIIGYSDLLLANQRPTDPSFQDIMQIKQNANRAAGL 529

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116
           ++ +            ++ LGD+   ++  +       +                  +  
Sbjct: 530 VRQLLAFSRRQTLRPQVLQLGDVLSDLQMLLRRLVGETIELDLRHGRDLWLVKADLNQFE 589

Query: 117 KILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++++NL + A  ++P                    +          +  ++ NG      
Sbjct: 590 QVIVNLVVNARDAMPDGGRIALRTRNIEPEACAAFSEKTVRPAEYVLIEVEDNGQGIPI- 648

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +I +    +        +    V  +  +    +  + +       S LL +
Sbjct: 649 DVKDKIFEPFFTTKEVGKGTGLGLAMVYGIVKQTGGTVFCDSVLGVGTTFSILLPR 704


>gi|126732983|ref|ZP_01748743.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Sagittula
           stellata E-37]
 gi|126706555|gb|EBA05632.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Sagittula
           stellata E-37]
          Length = 640

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           +       + S  L ++  + + + H+I +P+  I  +L++L E            + LI
Sbjct: 402 LEDTWRQLVMSEKLASIGEITAGVAHEINNPVAVIQGNLDVLRETLGDAAQPVQTEIDLI 461

Query: 54  RLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104
                     +  +              +VD    + D   ++E  +         ++  
Sbjct: 462 DGQVGRINAIVGKLLQFARPDDFSGTERAVDLAPVVRDCLVLVEHVLTRADIRVETELDE 521

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
                    E  ++++NL + A  ++         +    +D +      ++  G     
Sbjct: 522 APRVAIGGGEMQQVVINLVVNAVHAMEHSGTIFLTLNAEPRDGRPGAALRVRDTGPGVPD 581

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               T           +   +       L      R+      +        L 
Sbjct: 582 KLLDTVFDPFFTTKQAEGTGLGLSISQTLIQRAGGRISYRNPPEGGAEFLVWLP 635


>gi|30019490|ref|NP_831121.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|29895034|gb|AAP08322.1| Sporulation kinase [Bacillus cereus ATCC 14579]
          Length = 354

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 127 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 186

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 187 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 246

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 247 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 305

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 306 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 349


>gi|296332245|ref|ZP_06874707.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305674947|ref|YP_003866619.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150559|gb|EFG91446.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413191|gb|ADM38310.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 589

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +          E+ Q+I  
Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410

Query: 56  SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S+     +  +              Y     +      I +        +  +    + 
Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYEKVNVNEFLEKIIRKFSGVAKEKNITLHQDISL 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            + +   +     ++  NL   A       G V+I+V   K+     +K +G+     + 
Sbjct: 471 TEEEFMFDEDKMEQVFTNLIDNALRHTSSEGSVSIAVHSVKDGLKIDIKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +   +      D     +  + 
Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRMDKGTTFTFYIP 586


>gi|269103904|ref|ZP_06156601.1| osmolarity sensory histidine kinase EnvZ [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163802|gb|EEZ42298.1| osmolarity sensory histidine kinase EnvZ [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 450

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 68/207 (32%), Gaps = 8/207 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           ALL + + HD+ +P+  I  + E++  ++  + + +++     +      + +++     
Sbjct: 232 ALLLAGVSHDLRTPLTRIRLATEMMSPEDGYLAESMIKDTEECNEIISQFMDYLKSTKKQ 291

Query: 74  TGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
               V+    L ++ +    +    ++      G     +    + + NL + A      
Sbjct: 292 EEEDVELNTLLQEVAEAEGGYERHIEQELGQVPGVVRANTVALKRCVSNLVVNAIRYGDG 351

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVI 187
             K++      +    F ++ NG      E                S  +   +    V 
Sbjct: 352 WIKISSGASADRQTAWFCVEDNGPGIAPDEVTRMFQPLTRGDSARGSDAEGTGLGLAIVK 411

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +++  +      +  + +   L 
Sbjct: 412 RIIDQHEGTINVTNRSEGGLRVQINLP 438


>gi|228920151|ref|ZP_04083500.1| hypothetical protein bthur0011_11680 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839607|gb|EEM84899.1| hypothetical protein bthur0011_11680 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 402

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|220934271|ref|YP_002513170.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995581|gb|ACL72183.1| multi-sensor hybrid histidine kinase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 915

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 64/244 (26%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQ 51
            KN    L+           + L + I H++ +P+ AI    ELL++       +   ++
Sbjct: 269 QKNRELTLARGKAEEANQRKSQLLASISHELRTPLSAIQGYAELLEQYGDLDDRDLGWLE 328

Query: 52  LIRLSSMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           +I  SS   +  +  +               +    G   S +       + +  + V  
Sbjct: 329 IINTSSKDTLKLVNDLLDVARLESGRITIHRSQFQLGKCLSEVIGICRRSLRDRQVDVTL 388

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKING 155
            +                +++ NL   A      G     +    +    +    ++  G
Sbjct: 389 IMSPETPASITSDHLRFKQVITNLLSNALKFTANGQVNVHASVRQEGRTRQLEICVRDFG 448

Query: 156 NLARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +                       +       +      ++L +       + +
Sbjct: 449 PGIEPDDLPHIFEPFFQSRHPEVRRHSGAGLGLNITRGITELLGGQILVDSAPGTGSLFT 508

Query: 211 ALLE 214
            LL 
Sbjct: 509 LLLP 512


>gi|169832041|ref|YP_001718023.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
 gi|169638885|gb|ACA60391.1| multi-sensor signal transduction histidine kinase [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 571

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 16/234 (6%), Positives = 57/234 (24%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           ++I        +     + + H++ +P+ +I   +E L +           +++    S+
Sbjct: 331 QDITALRQLEQMRRDFVANVSHELRTPLTSIQGIIEGLIDGVIPAAEAGRYLRVAHGESL 390

Query: 59  SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                ++ +         R  +         I      ++          ++     +  
Sbjct: 391 RMNRLVQDLLDLAALEAGRADWELHAVELGEILDRVEIRLQAPRSEKGLAIRREVPPDLP 450

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE--- 162
            L     ++   L  +   ++              +   N    +++  G      +   
Sbjct: 451 PLLANENRLEQVLTNLVENAVRFSPPGGEITVAAEKRPHNRITVTVRDQGPGIPPEDLPH 510

Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      +         +    V  +       +  E            L 
Sbjct: 511 VWDRFYRVEKSRARETGGTGLGLAIVKQIVEAQGGEVAVESSPGEGASFFFTLP 564


>gi|307319788|ref|ZP_07599212.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
 gi|306894519|gb|EFN25281.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
            meliloti AK83]
          Length = 1229

 Score =  115 bits (287), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 30/239 (12%)

Query: 4    NICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54
                 L+   L         A L + I H++  P+ AI  +       +  +   ++  +
Sbjct: 988  QEELRLAQERLARAGQAASLAELSASIAHEVNQPLAAIVANSHACYRWLSADPVNIERAK 1047

Query: 55   LSSMSAII--------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            +++   I                 K      G     D +     +         +   +
Sbjct: 1048 ITTERVIRDAKSAADVVSRIRALFKQSVENRGILVLSDVISEACSLVAAEALRRRIRLHI 1107

Query: 101  QVSWT-GEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGN 156
             V            +  ++L+NL      ++        V + +    +E    +  NGN
Sbjct: 1108 DVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAVDDNKTVDVRMHQVDDEVRIEIGDNGN 1167

Query: 157  LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               FPE   +I +    +  +   +       +   +  RL  E  +         L K
Sbjct: 1168 GVAFPE---RIFEPFFTTKENGMGMGLAISRSIVEAHGGRLWAEKNEPRGARFVFTLPK 1223


>gi|327542873|gb|EGF29329.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 784

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L   + +AL          + + H+I +P+ AI    ++L     + +    +
Sbjct: 356 RKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVLLGHLEDPDNRNCV 415

Query: 54  RLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            +   +    L                + +          +  +  + QV  D   VD +
Sbjct: 416 MIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQ 475

Query: 100 VQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKIN 154
           V+                 ++L+NL   A      G                  FS+   
Sbjct: 476 VEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRFMKGADPPVVEFSIVDT 535

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      E+  ++          V        +       L       +  E        
Sbjct: 536 GIGI-SKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEMSLESELGEGST 594

Query: 209 LSALLE 214
               L 
Sbjct: 595 FFVRLP 600


>gi|323698745|ref|ZP_08110657.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323458677|gb|EGB14542.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 558

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 67/230 (29%), Gaps = 25/230 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------------VGIEDEVM 50
           + S  + +L  L + + H++ +P+  I  S   + +                     ++ 
Sbjct: 317 IQSSKMASLGKLAAGVAHEVNNPLSIIRESAGWIRDIINDGELGEGPAVDELQEAVSDID 376

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
           + +  +       L F R        VD  +        +  +    +  V      +  
Sbjct: 377 RHVERARTVTHRMLGFARRMEPLQEDVDLNMLANQTASFLENETRHRNIEVVTELDPDLP 436

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            ++ +  +I   +      A  ++ R G++T+  +      + ++  +G      E   +
Sbjct: 437 LITTDANQIQQVILNLLENAIDAIDRDGQITVITRTDDMGVVLNIADSGPGI-PKEYLAK 495

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +    +   +    V     +    +            +  L 
Sbjct: 496 VFDPFFTTKPTGEGTGLGLSIVYSTLSKLGGTIKVNSESGQGTTFTIHLP 545


>gi|311068828|ref|YP_003973751.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
 gi|310869345|gb|ADP32820.1| two-component sensor histidine kinase [Bacillus atrophaeus 1942]
          Length = 595

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 65/236 (27%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +          E+ Q+I  
Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEDDRKEIAQIIYD 410

Query: 56  SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S+     +  +           A  Y              +        +  +    + 
Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTALHYVKVNLDEFLEKIFRKFSGVAKEKNISLTDDISL 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            + + + +     ++  NL   A      GG V I+VQ  K+     +K +G+     + 
Sbjct: 471 NETEFAFDEDKMEQVFTNLIDNALRHTQSGGTVHIAVQSVKDGLKIDVKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +   +      D     +  + 
Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIP 586


>gi|289674924|ref|ZP_06495814.1| PAS [Pseudomonas syringae pv. syringae FF5]
          Length = 334

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 95  EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 154

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V            +
Sbjct: 155 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCHPEHWAV 214

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 215 GDSQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 273

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 274 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 325


>gi|322419866|ref|YP_004199089.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126253|gb|ADW13813.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 663

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + +        M+ V  L   + HD  + +  I     +L     E   + E+++ I ++
Sbjct: 285 LMEEQLRQSQKMEAVGQLAGGVAHDFNNVLTVIAGYANILKMDIPEESAQHELVEQIAVA 344

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109
           +  A    + +               LG++   +E F+       +             +
Sbjct: 345 AERAAQLTRGLLAFSRKQAMAPQRTDLGEVVHRVEQFLTRVIGEDIQLKTELLPEPLPVL 404

Query: 110 DLSRERAKILLNLFMVAHASL------------PRGGKVTISVQDSKNENIFSLKINGNL 157
               +  ++L+NL   A  ++                        S    +  +  NG  
Sbjct: 405 VDFGQIEQVLINLAANARDAMPDGGVFTIATGLYDPEGAGHHASASGRRAVIIVADNGKG 464

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I +    +        +    V  +  ++K  +          V +  L 
Sbjct: 465 M-DEETSRRIFEPFFTTKEVGKGTGLGMAIVYGIVQQHKGDIKVGSRPGEGTVFTIELP 522


>gi|254744763|ref|ZP_05202441.1| sporulation kinase A [Bacillus anthracis str. Kruger B]
          Length = 478

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 243 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 302

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 303 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 362

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +       +  +   G      ++ +++
Sbjct: 363 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 421

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 422 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 468


>gi|162454289|ref|YP_001616656.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161164871|emb|CAN96176.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 539

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 24/226 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAII 62
            S  L A+  L + + H+I +P+      +  L+         + + ++ I++       
Sbjct: 312 QSEKLAAVGTLAAGLAHEIRNPLNGAQLHVTFLERGLARAGLKDPDTLEAIQVVRDEIRR 371

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGEKIDLSR 113
               +     +       +    +  + E                 V+V      I L  
Sbjct: 372 LSALVSEFLDFARPKPLDLRPTPVVPLCERAARVAASSDGAGAQAAVKVDLPSTDIMLDL 431

Query: 114 ER---AKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +     ++LLNL   A  ++   G   VT+  +      +  ++ +G     P+    I 
Sbjct: 432 DPAKIEQVLLNLLRNAIEAVDAAGGGTVTLRARRQPRHAVVEVEDDGPGIASPDAP--IF 489

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +  +   +       +  +++  +  +       +    L 
Sbjct: 490 DPFFSTKPNGTGLGLAIAHRIVTDHEGTIEFQSRPGK-TLFRVTLP 534


>gi|90409825|ref|ZP_01217842.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum 3TCK]
 gi|90329178|gb|EAS45435.1| putative BaeS, Signal transduction histidine kinase [Photobacterium
           profundum 3TCK]
          Length = 940

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 61/243 (25%), Gaps = 32/243 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------M 50
            + +   L   +      +   + + H+I +P+  +    +LL +  +  E        +
Sbjct: 385 TQRLNQALEKAEAADRAKSTFLANLSHEIRTPMNGMLGLSQLLLKTDLTQEQRHHLLTLL 444

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---------DKRVQ 101
              +         L F ++  G      +   + D+   IE                +  
Sbjct: 445 DSGKHMMSILNDILDFSKIEQGQFKLNKANFCITDLVGTIESTYYSLAKEKGLGFSIQCN 504

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
             +            +IL N+   A     +G               +   I + +  G 
Sbjct: 505 FDYNSWFFADKSRIRQILFNVINNAIKFTDKGEVSVSLNQDQCDDPRERRLIITTQDTGI 564

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                ++  QI D                 +    V  L +     +  E         +
Sbjct: 565 GI-AEDRMQQIFDPFSQAEISTSRRFGGTGLGLSIVSQLVNLMNGDIQLESTYGKGSTFT 623

Query: 211 ALL 213
             L
Sbjct: 624 ITL 626


>gi|260175269|ref|ZP_05761681.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315923502|ref|ZP_07919742.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697377|gb|EFS34212.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 543

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 53/228 (23%), Gaps = 20/228 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    NL  +    L  + + H+I +P+ AI     LL E   + E    +        
Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDNKKERQDYVD-IMQENT 358

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106
             L  +         +++      ++ +       D                        
Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLGIKSFCEDIIRNYDIKEDKPVPVLLAPDLPEY 418

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                 +   +++ N    A      G  V      +++    F++   G      +   
Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIVLEYHYKAESNEIEFAVTDTGMGIAPDKVNQ 478

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    S      +       +       +  E    +       
Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGNGSRFWFT 526


>gi|171056738|ref|YP_001789087.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170774183|gb|ACB32322.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 508

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 60/223 (26%), Gaps = 25/223 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR--------- 63
           A L   + H++ +P+ AI    E+L E     +  + ++ +R    S             
Sbjct: 280 AFLA-NMSHELRTPLNAIIGFSEVLIEQMFGEVNAKQLEYLRDIHASGHHLLTLINDVLD 338

Query: 64  ------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                  +       +         L  + +   +             G+ +   R+  +
Sbjct: 339 LSKIEAGRMELQPSRFHLPELLDNSLTLVRERAANHGLRLTLDVQDGLGDWVADPRKIKQ 398

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE--- 173
           +++NL   A    P GG VT+  +         ++   G      E+     +       
Sbjct: 399 VVVNLLSNAVKFTPAGGHVTLRARRIDAGTAEIAVIDTGVGIAPEEQAQVFEEFRQAGTD 458

Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +           +   L  +         +  L 
Sbjct: 459 PLRKSEGTGLGLALARRFVELHGGTLRVDSAPGRGSTFAFTLP 501


>gi|153854045|ref|ZP_01995378.1| hypothetical protein DORLON_01369 [Dorea longicatena DSM 13814]
 gi|149753427|gb|EDM63358.1| hypothetical protein DORLON_01369 [Dorea longicatena DSM 13814]
          Length = 899

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +   L    +    D   QL      
Sbjct: 658 KQEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNSDSFDNDTKKQLYMDIYD 717

Query: 59  SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +                  + D +  +        +  + +  + V    E 
Sbjct: 718 DSMWLINLVENLLAVTRIEEGRLNLRITEDLMDDVITEALHHINRKSEEHHISVESKEEF 777

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     ++++N+   A    P+   + I  +    + I S+  +GN     E   
Sbjct: 778 LLAKMDAKLIVQVIINIVDNAIKYTPKNSHIVIRTEKRGKQAIVSISDDGNGI-ADEIKP 836

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           +  S  +       + + +   L       H  V +  L 
Sbjct: 837 RIFDMFYSGANQIADSRRSLGLGLSLCKSIINAHGGELTVSDNLPHGTVFTFTLP 891


>gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
           DW4/3-1]
          Length = 946

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50
           +         +  L A  LL S   H++ +P+  + N++  L         +      ++
Sbjct: 686 LRDAAVRAAENERLAATGLLTSGFAHEVRNPLNGLMNAMLPLRESILGSQVDPDTTRAML 745

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTG---SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            ++           + +      +     V+    L     V+   I  D  V   +  +
Sbjct: 746 DVMEECGTRIRHLAESLLSFVRTSDRLVPVNLGASLDSTLSVLAWKIPPDVLVVRDYQCD 805

Query: 108 KIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++ +NL   A  ++   G++ IS +      + S+   G     PE   
Sbjct: 806 VPITGDPGSLNQVWVNLIDNALRAVGDKGQLRISTEHDGATAVVSITDTGTGI-KPEDME 864

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++      +    +   +       +   +   +               L 
Sbjct: 865 RLFQPFFSTRAAGEGTGLGLALCRRIVLRHGGLIQLTSEWGKGTRCEVRLP 915



 Score = 86.4 bits (212), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 65/251 (25%), Gaps = 40/251 (15%)

Query: 2   AKNICFNLSSMDLVALLCS-------------RICHDIISPIG----------------- 31
           A+      ++  L A L +              + H++ +P+                  
Sbjct: 268 ARTQELVEANSKLAAALDTQKELIRLKSEFFDNVSHELRTPLTLILLSLESLLQRDPSAY 327

Query: 32  --AIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV 89
             ++   L  ++       +++LI      A +    +RL +        L  L    +V
Sbjct: 328 PDSVRQHLATMERSA--HRLLKLINNLLDLAQMEAGKLRLRYQAVELHSLLTSLLSPFRV 385

Query: 90  IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           + +   +   +     G           +  NL   A     +G  V + V +  +    
Sbjct: 386 MAEKKGLTLTLVGQAVGPIHGDVERIEVVFQNLVSNALKFTQQGS-VQVRVSEDSSSVFV 444

Query: 150 SLKINGNLARFPE---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
            ++  G      +    F +    +           I    V      +   +    +  
Sbjct: 445 EVEDTGPGIAPQDIDVIFDRFAQADSTGTRRFGGTGIGLALVKETVDLHSGSIRVSSVVG 504

Query: 205 HNVVLSALLEK 215
                   L K
Sbjct: 505 KGATFRVQLPK 515


>gi|300864607|ref|ZP_07109465.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337356|emb|CBN54613.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 708

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 57/240 (23%), Gaps = 30/240 (12%)

Query: 5   ICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +   L   +  +       + + H++ +P+ AI    E+L+E+  ++ +  L+       
Sbjct: 461 LQEALHKAEAASRAKSTFLANMSHELRTPLNAIIGYSEMLEELASDEGLEDLLPDIQKIR 520

Query: 61  IIRLKFMRLAFGYTGSVDSL------------------IGLGDIEQVIEDFIAVDKRVQV 102
                 + L                               +  +  +        +    
Sbjct: 521 SAGKHLLTLINDILDLSKIEAGKMELYLESFDLADLVGDVIATLHPLAHKNSNKLEVSCC 580

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLAR 159
           S  G       +  +IL NL   A      G     + ++     +     +   G    
Sbjct: 581 SDLGVVFTDLTKVRQILFNLLSNALKFTENGTVRLSATREMGSNSDWVYLCVADTGIGMS 640

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++          D +         +               +  E         +  L+
Sbjct: 641 VEQQQCLFEVFNQGDASTTRKYGGTGLGLAISRRFCQMMGGDITVESELGVGSTFTVHLK 700


>gi|296103859|ref|YP_003614005.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058318|gb|ADF63056.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 948

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V  + +     ++  G     
Sbjct: 572 EPDVPLTLHGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVCRAGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLVSMMDGDISVDTEPGMGSQFTIRIP 689


>gi|239906645|ref|YP_002953386.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796511|dbj|BAH75500.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1136

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 70/240 (29%), Gaps = 31/240 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L S  + A+  L   I HD  + + +I NS EL    +      ++ ++ +  +  
Sbjct: 752 ERQLLQSQKMEAIGTLAGGIAHDFNNILTSIINSTELALMDMAPDDPMEDDLRRVLKAGE 811

Query: 59  SAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                +K +      +      ++    + +   +I   +  + ++ V      +    +
Sbjct: 812 RGSRLVKQILSFTRPSQAGFAPINVADVVNEAAGLIRASLPRNIKIVVETPDAPVACRAD 871

Query: 115 R---AKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGN 156
                +I++NL   A  ++                   +       +      ++   G 
Sbjct: 872 PTQLHQIVMNLCTNAFQAMRPTGGVLALRLTEDSLDEDQAGQVGTRAGRCARITVADTGP 931

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I D    +    +   +    V  +   ++  +        + V    L 
Sbjct: 932 GI-AGDIVDKIFDPFFSTKQKNEGTGLGLAVVRGIVKSHRGGVRVTSAPGEHTVFDIFLP 990


>gi|229132830|ref|ZP_04261675.1| hypothetical protein bcere0014_17590 [Bacillus cereus BDRD-ST196]
 gi|228650657|gb|EEL06647.1| hypothetical protein bcere0014_17590 [Bacillus cereus BDRD-ST196]
          Length = 351

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 74/233 (31%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +       + +          +    +   L        +  + +  +K +++    +K+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKELELDLDMDKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ K     S+   G      +    
Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   +K ++  E ++ +       + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHKGKIKVESVEGNGTEFIVRIP 346


>gi|94967538|ref|YP_589586.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549588|gb|ABF39512.1| periplasmic sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 478

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           +A +      S  L + L   + H+  +P+ +I  S+  L      +     E++ +I  
Sbjct: 241 LATSRAAR-ESEQLRSALLDSVTHEFRTPLTSIKASVTTLLEGSLADAAARAELLTIINE 299

Query: 56  SSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--- 105
            +      +                     +L  + +     +        V V      
Sbjct: 300 ETDRLNRLVGEAAEMARLDSRVITLQRRQFALSEVVETVLDEQISTLRKHPVTVELPKGL 359

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++L +L   A         + IS +   +  + S+   G      E   
Sbjct: 360 PPVYADFDRIRQVLTHLVENAAKYSENDTPIRISAELKGDFIVTSVADRGPGIDSFEQTL 419

Query: 163 KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +   G  +        +      +L   +   L          V S  L 
Sbjct: 420 IFDKFYRGEKQRYAAAGTGMGLAISKVLIEAHGGTLTVVSQIGQGSVFSFTLP 472


>gi|255012238|ref|ZP_05284364.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
          Length = 548

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 66/236 (27%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     ++   L     + + H+  +P+  I + +EL+ +       +           
Sbjct: 8   EKEHIEEMNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHA 65

Query: 62  IRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----T 105
            ++K +          D                 +   +     A  K +          
Sbjct: 66  QQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQD 125

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  K+L NL   A   +P  GK+ I    + ++ I ++K +GN     E   
Sbjct: 126 VFIWIDDWQMRKVLFNLLSNAFKHVPDKGKINILTSTTPDQVIIAVKDSGNGISKEE-QE 184

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I D   ++            I       +   +   +  E   +        L K
Sbjct: 185 RIFDRFYQADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPK 240


>gi|311235341|gb|ADP88195.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris RCH1]
          Length = 492

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       +    L +L  L S I H + +P+  I  S ++L       +  +   +++ 
Sbjct: 250 LENRQNQLVQEKKLASLGVLTSGIAHQLNNPLNNISTSCQILQEDIGSGDAELHARMLRN 309

Query: 53  IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTG 106
           I    + +       L+F R              +     ++   +     +   V    
Sbjct: 310 IHQEVLRSRDIVKGLLEFAREKDFSLVPQRLADVVERAVSLVSSEVPAGVTLSASVPPDM 369

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163
                ++   + L+NL + A  ++P          +    ++     ++  G     PE 
Sbjct: 370 VVPLDAQHMQEALINLLINAIQAIPAPPGTITVSATRVPGRDMVALRVEDTGTGI-PPEH 428

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +I D             +    V  +  ++  R+  E            L
Sbjct: 429 LGRIFDPFFTLKAVGKGTGLGLSIVFGVVKKHGGRVTVESEPGKGTAFIIHL 480


>gi|237755742|ref|ZP_04584348.1| putative integral membrane sensor signal transduction histidine
           kinase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692106|gb|EEP61108.1| putative integral membrane sensor signal transduction histidine
           kinase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 673

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV---------------GIED 47
               + S  L     L + I H+I +P+  I+ S  ++                     +
Sbjct: 436 ENQIIQSEKLAVIGRLAAGISHEIKNPLAIINQSAFMVKRRIQKLCSNVDNIDSILESIE 495

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWT 105
            + + +  ++      L F +  +     V+    + +  ++                  
Sbjct: 496 RIERNVIRATDIIERLLNFSKPYYTKAEKVNLREVIEEAIKLAILQAQKSNISFSKKLMD 555

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEK 163
                      ++ +NL + A  ++   GK+TI +     +      +K  G      E 
Sbjct: 556 AYIKGDKNALIQLFINLILNAIEAIENKGKITIKIVPLKREGNVKVVIKDTGKGI-PEEI 614

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +       +  ++  ++L    +        +  
Sbjct: 615 MDKIFEPFFTTKEKGTGLGLAVSYRIVQDHGGKMLVNSKEGEGTEFILIFP 665


>gi|218233859|ref|YP_002366122.1| sporulation kinase B [Bacillus cereus B4264]
 gi|228938554|ref|ZP_04101162.1| hypothetical protein bthur0008_12190 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971433|ref|ZP_04132059.1| hypothetical protein bthur0003_12130 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978046|ref|ZP_04138425.1| hypothetical protein bthur0002_12500 [Bacillus thuringiensis Bt407]
 gi|229108895|ref|ZP_04238499.1| hypothetical protein bcere0018_11710 [Bacillus cereus Rock1-15]
 gi|229126756|ref|ZP_04255768.1| hypothetical protein bcere0015_12130 [Bacillus cereus BDRD-Cer4]
 gi|229149640|ref|ZP_04277871.1| hypothetical protein bcere0011_11990 [Bacillus cereus m1550]
 gi|218161816|gb|ACK61808.1| sporulation kinase B [Bacillus cereus B4264]
 gi|228633850|gb|EEK90448.1| hypothetical protein bcere0011_11990 [Bacillus cereus m1550]
 gi|228656696|gb|EEL12522.1| hypothetical protein bcere0015_12130 [Bacillus cereus BDRD-Cer4]
 gi|228674551|gb|EEL29791.1| hypothetical protein bcere0018_11710 [Bacillus cereus Rock1-15]
 gi|228781707|gb|EEM29906.1| hypothetical protein bthur0002_12500 [Bacillus thuringiensis Bt407]
 gi|228788300|gb|EEM36253.1| hypothetical protein bthur0003_12130 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821152|gb|EEM67169.1| hypothetical protein bthur0008_12190 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939063|gb|AEA14959.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 402

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|166030485|ref|ZP_02233314.1| hypothetical protein DORFOR_00146 [Dorea formicigenerans ATCC
           27755]
 gi|166029737|gb|EDR48494.1| hypothetical protein DORFOR_00146 [Dorea formicigenerans ATCC
           27755]
          Length = 899

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +   L    +    D   QL      
Sbjct: 658 KQEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNGDSFDNDTKKQLYMDIYD 717

Query: 59  SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +                    D +  +        +  + +  + V    E 
Sbjct: 718 DSMWLINLVENLLAVTRIEEGRLNLRIMEDLMDDVITEALHHINRKSEEHHISVESKEEF 777

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     ++++N+   A    P+   + I  +    + I S+  +GN     E   
Sbjct: 778 LLAKMDAKLIVQVIINIVDNAIKYTPKNSHIVIRTEKRGKQAIVSISDDGNGI-ADEIKP 836

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           +  S  +       + + +   L       H  V +  L 
Sbjct: 837 RIFDMFYSGANQIADSRRSLGLGLSLCKSIINAHGGELTVSDNLPHGTVFTFTLP 891


>gi|162450071|ref|YP_001612438.1| sensory box hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161160653|emb|CAN91958.1| sensory box hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 504

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 66/230 (28%), Gaps = 18/230 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +  +++ +A L   + H+I +P+ A    L LL           +          
Sbjct: 256 ERRAADAEALNAMAPLALGLAHEIRNPLNAAVLELHLLSRGIDRLSDEAIREPMKRRVGI 315

Query: 60  --------------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                          +   +              +  + D+E+       V+    ++  
Sbjct: 316 VEAEIARLGRLLGEFLELARPRAPHREPVDLARVVRDVLDLEEEAFASHHVEVVRDLADD 375

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +    +  +++LNL + A   +P GG +        +E   S+   G          
Sbjct: 376 CFALGDVEKLKQVVLNLVVNALDVMPDGGVLRACASGDAHEVWLSIGDTGPGIAPTILAE 435

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            I D    +      +    V  +  ++  R+  +        +   L +
Sbjct: 436 -IFDPFFTTKAAGTGLGLAIVRKIVDQHAGRVDVDAHAADGTTVRVRLPR 484


>gi|260061102|ref|YP_003194182.1| sensory transduction histidine kinase [Robiginitalea biformata
           HTCC2501]
 gi|88785234|gb|EAR16403.1| sensory transduction histidine kinase [Robiginitalea biformata
           HTCC2501]
          Length = 484

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 65/231 (28%), Gaps = 22/231 (9%)

Query: 6   CFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR 54
              LS+  L           +  ++ H+I +P+  +  S++  +   +    D   Q+  
Sbjct: 252 ELELSATKLARSEREQAWREMAKQVAHEIKNPLTPMRLSVQSFERKFDPRDPDVGRQVAE 311

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKI 109
            S            +A  ++          +   V+E       I  +  +      ++I
Sbjct: 312 FSKTLIQQIDTLSSIASAFSNFAKMPAQQNETLNVVEIVKLALDIFNEPYIHFMADEQEI 371

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKF 164
               +R +++  +  +   ++    +V                   +  NG      +  
Sbjct: 372 IAKMDRTQLIRVVTNLVKNAIQAVPEVDHPRILVSVAAEDGFVKIMVADNGIGI-EADNR 430

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +    +      +    V  +      R+          V +  L +
Sbjct: 431 DKVFEPKFTTKSSGMGLGLGMVKTIVETYGGRIEFTSQKGKGTVFTVYLPR 481


>gi|326387436|ref|ZP_08209045.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326208092|gb|EGD58900.1| histidine kinase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 431

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 58/215 (26%), Gaps = 19/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSSMSAIIRLKFM 67
             +   H++ +P+ +I   +E L +                V++  +         +   
Sbjct: 195 FVANASHELRTPLASIIGYIETLSDPEAKIDAATSARFHATVLREAKRLQHLVEDLMSLS 254

Query: 68  RL----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           R+           VD       I   ++  +  ++ +  +         ++  +++ NL 
Sbjct: 255 RIEAEKHDIPRDRVDLGQLAASIGAEVDATLGEERIIVSTDEAIVQGDRQQLDQVIRNLI 314

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDS 178
             +         V + V     E + S+  +G             +              
Sbjct: 315 DNSMKYGDPKQPVEVHVARDGREAVLSVTDHGEGIHPDHIPYLTRRFYRTDPGRSRMAGG 374

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    V  +   ++ +L           ++  L
Sbjct: 375 TGLGLAIVKHIVERHRGKLDVTSKLGSGTTVTVRL 409


>gi|311278813|ref|YP_003941044.1| histidine kinase [Enterobacter cloacae SCF1]
 gi|308748008|gb|ADO47760.1| histidine kinase [Enterobacter cloacae SCF1]
          Length = 949

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLHTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           S S+ + LK +     ++      + +   E    + ++                    +
Sbjct: 512 SNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMSHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                 + +       +++ NL   A      G  +    QDS      S++  G     
Sbjct: 572 DPDVPPQMVGDPMRLQQVISNLLSNAIKFTDMGCIILHLRQDSD-YLSISVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDIAVDSEPGMGSQFTIRIP 689


>gi|229189521|ref|ZP_04316537.1| hypothetical protein bcere0002_12000 [Bacillus cereus ATCC 10876]
 gi|228593966|gb|EEK51769.1| hypothetical protein bcere0002_12000 [Bacillus cereus ATCC 10876]
          Length = 402

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DSEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGIGTTFLLTFP 397


>gi|170764066|ref|ZP_02631165.2| sensor histidine kinase [Clostridium perfringens E str. JGS1987]
 gi|170663362|gb|EDT16045.1| sensor histidine kinase [Clostridium perfringens E str. JGS1987]
          Length = 411

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60
              ++   L   I H++ +P+  I + LE + +   E    +L+ +   +          
Sbjct: 186 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 245

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
               K+   +        ++  +          +A  K +++ +  + I+L  ++    +
Sbjct: 246 QKLNKYDEASIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 305

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
            L+N+   A      G  + I  +   N+ I S++  G      +    F +    +   
Sbjct: 306 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 365

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I    V  +   +   +  E         + +L K
Sbjct: 366 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 408


>gi|206970639|ref|ZP_03231591.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|206734275|gb|EDZ51445.1| sensor histidine kinase [Bacillus cereus AH1134]
          Length = 357

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L E           + +I   
Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQEDNFSEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 240 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGKGTEFIVRMP 352


>gi|119512709|ref|ZP_01631781.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
 gi|119462629|gb|EAW43594.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
          Length = 1287

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 65/255 (25%), Gaps = 41/255 (16%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +       +  +     + + H++ SP+ AI    +LL    + D  +     +    
Sbjct: 878  LQQQTEQLREANRMKDEFLAILSHELRSPLNAILGWAQLLRSRKLSDIQIAKAMETIERN 937

Query: 61   IIRLKF---------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                 + L       V  +    +   +      +D R+ +  +
Sbjct: 938  ARMQTQLVEDLLDISRMIRGKLHLHVCTCNLVPLIESAVETVHLAAQAKEIDLRISLIPS 997

Query: 106  GEKIDLSRER---------AKILLNLFMVAHASLPRGGKVTISVQD-----------SKN 145
             E                  +I+ NL   A    P GG++ I +               +
Sbjct: 998  PEMPQDHSRFLVSGDIERLQQIIWNLLSNAIKFTPTGGRIEIRLCQSVEDDEKLARTITS 1057

Query: 146  ENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPE 200
                 +   G   +       F +    +     +     +    V  L   +   +  +
Sbjct: 1058 YAQIQVIDTGIGIKPEFLPYVFDRFRQADSSSTRSYGGLGLGLAIVRHLVELHGGIISVD 1117

Query: 201  II-DDHNVVLSALLE 214
               ++     +  L 
Sbjct: 1118 SQGENEGATFTVKLP 1132


>gi|89097664|ref|ZP_01170552.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
 gi|89087523|gb|EAR66636.1| two-component hybrid sensor and regulator [Bacillus sp. NRRL
           B-14911]
          Length = 956

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 63/232 (27%), Gaps = 24/232 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
              F +  M   +   S + H++ +P+ +I    EL+     +   + + +  I   +  
Sbjct: 577 TKEFEVDQMK--SEFVSTVSHELRTPLASILGFTELMLNRELKPDKQKKYLTTIYNEARR 634

Query: 60  AIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
               +                   Y   +  +  + + +Q+  D   +    +       
Sbjct: 635 LTSLINDFLDVQRMEAGKQTYEKKYLRLLPIIEQVIEKQQINTDIHKIKIDDRSIGNDVI 694

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +    +  ++  NL   A    P GG + I +       +  ++  G      +   ++ 
Sbjct: 695 LGDKSKVEQVFTNLISNAVKYSPGGGDIIIRLYQEDKSVLAEVEDKGLGI-PEDALDKLF 753

Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        I    +    V  +   +   +          + +    
Sbjct: 754 TKFYRVDNSDRRRIGGTGLGLSIVQEIMKAHSGSISVASSYGKGSIFTLSFP 805


>gi|312868769|ref|ZP_07728961.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311095755|gb|EFQ54007.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 491

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 66/237 (27%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50
           M   +   +   +D  +   S + H++ +P+  I   LE+L   G +D  +         
Sbjct: 246 MFNEMLDRMQRYLDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPQVLDDSLAASL 305

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              + ++      +   +  ++   +      +  +          +  D    +    +
Sbjct: 306 VETKRMKNLVQEMLDLSRAEQVEINFRDQRTVVNDVVHQVFNNFKMLYPDFTFTLDDDVD 365

Query: 108 K----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +            ++L+ L   A        ++ +++    N     ++  G     PE 
Sbjct: 366 EKISVNIYRDHLEQVLVILCDNAVKYSGERKEIHLTLSRGMNTVEIGVQDFGEGI-APED 424

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ D               + +       L       +  E       +   +L 
Sbjct: 425 AQRVFDRFYRVDKARSRKKGGNGLGLSIAQRLVEGYHGSISLESSLGAGSLFKVVLP 481


>gi|304394453|ref|ZP_07376374.1| phosphate regulon sensor protein PhoR [Ahrensia sp. R2A130]
 gi|303293363|gb|EFL87742.1| phosphate regulon sensor protein PhoR [Ahrensia sp. R2A130]
          Length = 375

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           +I   +++  + +   + + H++ SP+ A+   +E L     D+    D  + L++  + 
Sbjct: 133 DISEQIAAEQMRSDFVANVSHELRSPLTALSGFIETLQGPAKDDADASDRFLTLMQAETG 192

Query: 59  SAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +  +           A          I       V +     DK ++     E  
Sbjct: 193 RMTRLIADLLNLSKVEGRQAARPTDEIELQRILARACTLVQQRADDADKVIRFDIPSELP 252

Query: 110 DLSRERA---KILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLAR 159
            +  +     +++ NL   A                 T +   S      +++ +G    
Sbjct: 253 SIRGDEDELVQLVQNLLENAVKYSAPGTAIDVSVTPDTRTPGISGPTLTVAVRDHGEGI- 311

Query: 160 FPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E   ++ +                 +    V  +   ++ RL  E       +    L
Sbjct: 312 AREHLPRLTERFYRVDDHRGRKSGGTGLGLAIVKHVVQRHRGRLHIESEVGKGSIFKVHL 371

Query: 214 E 214
            
Sbjct: 372 P 372


>gi|294497206|ref|YP_003560906.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294347143|gb|ADE67472.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 713

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 71/225 (31%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLS-SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            K     L  S  L     L + + H+I +P+ ++   + LL E          I +  +
Sbjct: 486 RKKAEEKLRTSEKLAVVGELAAGVAHEIKNPLTSLKGFVHLLKEQHPKDALYIDIMETEL 545

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKI 109
           + +       ++  K   +          +  +  + +       V    +      +  
Sbjct: 546 ERMNGIVEEFLMLGKPQVMKVESLNMQALVQEVCSLLEPEAVEKEVAFIFERDDQLPKVY 605

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +N+   +  ++P GG + I+++  +N     L   G     PE+  +I +
Sbjct: 606 GDKNQLKQVFINIIKNSIEAMPEGGAIHITIKIKENHLWLQLADEGQGI-PPERLAKIGE 664

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   +  ++      D    +  L  
Sbjct: 665 PFYSTKEKGTGLGLMVSYRIIKAHHAQMTFSSQLDKGTSVDILFP 709


>gi|205353388|ref|YP_002227189.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205273169|emb|CAR38130.1| sensor protein RcsC [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
          Length = 915

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 419 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 478

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 479 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNYITANYLPLVVRKQLGLYCFI 538

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+   +     ++  G     
Sbjct: 539 EPDVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 597

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 598 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 656


>gi|220908400|ref|YP_002483711.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865011|gb|ACL45350.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 500

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 73/231 (31%), Gaps = 21/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + K    +           S I H+  SP+  I ++++LL++       + +  Q +R S
Sbjct: 268 LEKEQELSQMKNK----FISMISHEFRSPMAIISSAIDLLEDNELSEDEKIKFYQKMRSS 323

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQVSWTG 106
               +  +  + L    TG V+              + +  Q+          V    +G
Sbjct: 324 IDQTLQLIDEVLLLGRATGRVELEHSPLDLEKYCSEIVETLQLTTGREHQIIYVCEGTSG 383

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
           +    S    +I+ NL   A    P+ G +  ++    N+ IF ++  G      +    
Sbjct: 384 QVGMDSFLLKQIIDNLLSNAIKYSPKSGMIRFTLSLQSNQAIFCIQDWGIGIPEQDQAKL 443

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           FT          I    +    V         ++  E  +      +  L 
Sbjct: 444 FTAFKRAGNVYKIQGTGLGLAIVKQCVDLLHGKIEVESQEGCGTTFTVTLP 494


>gi|189460351|ref|ZP_03009136.1| hypothetical protein BACCOP_00988 [Bacteroides coprocola DSM 17136]
 gi|189432903|gb|EDV01888.1| hypothetical protein BACCOP_00988 [Bacteroides coprocola DSM 17136]
          Length = 484

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 73/238 (30%), Gaps = 26/238 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           M KNI     L S        S I H++ +PI AI  SL+LL++     + DE  +L + 
Sbjct: 248 MLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDSRVGDLNDEQKELAQS 305

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +    +G +     +    ++IE  I  ++     +  +    
Sbjct: 306 IQDNSERLLNITGELLNMTQVESGKLQLKPRITKPIELIEYAIKANRVQAEKFNIQIEVQ 365

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLA 158
             E               +L NL   A    P  G++ I   Q   N     ++  G   
Sbjct: 366 YPENKIGKLFVDSEKIAWVLTNLLSNAIRYSPENGRIIIGVRQTDDNYIEMYVRDFGKGI 425

Query: 159 RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +          + +    +           +   L  E         +  L+
Sbjct: 426 DPRYHQSIFDHYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESEVGKGSCFTLRLK 483


>gi|171322587|ref|ZP_02911366.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171092081|gb|EDT37503.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1001

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 56/239 (23%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    +   + + H+I +P+ AI  +LEL++   +  E  + ++    S+
Sbjct: 506 LREAREAAEDANKAKSTFLATMSHEIRTPLNAIVGNLELMERAPLPAEERRRLQTVMSSS 565

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
                                       D    L D+  +     A        R+    
Sbjct: 566 DALLRVINDVLDLSKVESNQMVLEAVPFDLRAVLRDVAAIFRPLAAARHLALECRIDPQL 625

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160
               +       +I+ NL   A     RG     +         +     ++  G     
Sbjct: 626 ADGYVGDPTRLRQIVSNLVSNAIKFTERGSVTIEARPTGAVGQAHGVEVVVRDTGIGIAP 685

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               T                    +       LA      L  E            L 
Sbjct: 686 ESLPTLFDVYVQTDASIYRRFGGTGLGLPLCRRLARLMHGDLAVETRPGEGATFIVSLP 744


>gi|311104394|ref|YP_003977247.1| sensor protein KdpD [Achromobacter xylosoxidans A8]
 gi|310759083|gb|ADP14532.1| sensor protein KdpD [Achromobacter xylosoxidans A8]
          Length = 928

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 62/233 (26%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56
           A+    ++ S  L   L + + HD+ +P+ ++    + L            + ++ +R  
Sbjct: 684 AQQALVSMESEKLRNSLLAAVSHDLRTPLTSLVGMTDTLMRQQAALPPGIHDTIRAMRDQ 743

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------- 107
           +      +  +            L       + +        R  ++             
Sbjct: 744 AQRMHALVVNLLDMARLQNRDTPLRLEWQSIEELVGASLAAMREPLAAHRVAVDSLSQLP 803

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                     ++L NL   A    P G  + +     + E   ++  NG           
Sbjct: 804 LVECDGVLIERVLCNLLENAAKYTPAGSTLRVHADVHEGELRVAVSDNGPGVPPGAERRI 863

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214
           F +   G+ ES      +       +   +  ++  E              L 
Sbjct: 864 FEKFTRGDRESATPGVGLGLAVCEAIIAAHHGKIWVEHAPGQESGAQFVFTLP 916


>gi|308188532|ref|YP_003932663.1| sensor protein KdpD [Pantoea vagans C9-1]
 gi|308059042|gb|ADO11214.1| sensor protein KdpD [Pantoea vagans C9-1]
          Length = 892

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 18/227 (7%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56
             +     L   L S + HD+ +P+  +    E+L                ++ +    +
Sbjct: 653 RLSAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASDNSKYVPQASQIREQTLST 712

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  L   R+  G     +       +                VQ+    + + +  
Sbjct: 713 IRLVSNMLDMARIQSGGLNLREEWLALEEVIGGALSSMAPSLKGHEVQLDLPDDIVLIKG 772

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +     ++  NL   +           I    +      ++  +G      +    F + 
Sbjct: 773 DSTLLERVFTNLIENSLKYAGNSAPRGIRAWRAATRLEIAVWDSGPGVAEDDLTRIFDKF 832

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             G+ ES +    +       +   +  ++  E   +        L 
Sbjct: 833 WRGDKESAVPGVGLGLAICKTIIESHGGQIWAENRPEGGAAFRLSLP 879


>gi|158339144|ref|YP_001520321.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158309385|gb|ABW31002.1| sensory transduction histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 551

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 70/241 (29%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLI 53
           +++ +    ++++  A L     S + H++ +P+ AI    E+L E     +  + ++ +
Sbjct: 170 LSEQLVIVNAALERAAGLKDEFLSTMSHELRTPLTAIIGLAEVLREEVYGSLNPKQLKSV 229

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQ 101
                S    L  +      +      + L              +  V       +  + 
Sbjct: 230 CTIEESGETLLTQLNDLIDLSKIESGNLVLERRRVSISALVESCLAMVRPQAQKQNITLS 289

Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                +  +++ +     ++L NL   A    P+GG V++       +    +   G   
Sbjct: 290 HHIPTDLAEVTGDELRLRQVLQNLISNALKFTPQGGAVSVQATADTEQVQVRVTDTGIGI 349

Query: 159 RFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +             +         +    V  L H +   +  E            L
Sbjct: 350 ATADLANIFEPFVQLDSSWARPYPGTGLGLTLVQRLIHLHGGTVQVESEVGSGSTFIVTL 409

Query: 214 E 214
            
Sbjct: 410 P 410


>gi|91774571|ref|YP_544327.1| signal transduction histidine kinase [Methylobacillus flagellatus
           KT]
 gi|91708558|gb|ABE48486.1| signal transduction histidine kinase [Methylobacillus flagellatus
           KT]
          Length = 531

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 66/228 (28%), Gaps = 17/228 (7%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLS 56
             +      + L AL  L + I H+I +P+ AI ++ +LL E          ++Q+I  +
Sbjct: 302 SQLQTQAQQLKLAALGRLTANIAHEIRNPLSAISHATQLLQEDESHDPASQRMLQIISDN 361

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEK 108
                  +K +        +    I L D  +   D     +++                
Sbjct: 362 VQRMEQMIKDVLELNRRDRTRQQEIRLTDFLREFHDQFYQVEKIPPQGFVLDTDVLEPTI 421

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQI 167
           +   R   ++L NL         +          S+       +  +GN          +
Sbjct: 422 MFDHRHLHQVLWNLCRNGWRHSRQRNGSLTLSLRSEARKWLIEVHDDGNGIPDSAL-AHL 480

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +      +  Y    L   N   +      +        +EK
Sbjct: 481 FEPFFTTESTGTGLGLYIARELCEANGATIE-HAAVEQGCSFVIHIEK 527


>gi|6174691|dbj|BAA85983.1| NtrB [Shewanella violacea]
          Length = 347

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 22/230 (9%)

Query: 5   ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               L +    A  L   + H+I +P+G +  + +LL     + E+ +   +    A   
Sbjct: 116 QQLTLDAQQQAAQYLVRNLAHEIKNPLGGLRGAAQLLSRELHDPELHEFTDMIIEQADRL 175

Query: 64  LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +               +    +  + +++   +  + + +  +     D++ +  +I
Sbjct: 176 RNLVDRLLGPQKPTQHTQQNIHEVIQKVLKLVTMALPENIQFKQDYDPSIPDINMDPEQI 235

Query: 119 LLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +   +                   ++TI  Q  K     S+  NG     PE  
Sbjct: 236 QQAVLNIVQNAVQALEGVGGNIIIKTRAQHQITIGTQRHKIVIALSVIDNGPGI-KPELM 294

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V        +        A  +  R+  +         + LL 
Sbjct: 295 DTLFYPMVTGRDQGSGLGLSISHNFARLHGGRIDCQSTPGE-TEFTILLP 343


>gi|119716160|ref|YP_923125.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
 gi|119536821|gb|ABL81438.1| PAS/PAC sensor signal transduction histidine kinase [Nocardioides
           sp. JS614]
          Length = 920

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 68/231 (29%), Gaps = 24/231 (10%)

Query: 8   NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSA 60
            L  +D+  +   S + H++ +P+ +I    ELL++         +  +++ I  +    
Sbjct: 687 RLRQLDVAKSEFVSTVSHELRTPVASIVGYTELLEDGTVVDPAPEQRPMLESIARNGQRL 746

Query: 61  IIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           I+    +           A+ +     + +     E +       D  + +      + +
Sbjct: 747 ILLCDDLLTLSGLDSGATAWQHDTLDLATLLPPAEEAIRPQLTGRDLELSMLAEPAPVLV 806

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +R ++   L      A      GG++   V    +E   S+   G      E+     
Sbjct: 807 LGDRVQLERALINLLGNAVKFTEDGGRIECRVGRQDDEAWLSISDTGLGIPVEEQNGLFQ 866

Query: 169 DGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       I    +    V      +  R+  +         +  L 
Sbjct: 867 RFFRSSTAQAHAIQGTGLGLSIVAATVAAHGGRIDVDSAHLQGTTFTVRLP 917


>gi|288942569|ref|YP_003444809.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288897941|gb|ADC63777.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 706

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 59/241 (24%), Gaps = 31/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    + +         S + H++ +P+  I    +LL E  + +   + +     SA 
Sbjct: 452 AKERAESAARAK--TTFLSTMSHELRTPMHGILGMTQLLLESDLNERQRRQLDTVKRSAD 509

Query: 62  IR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWT 105
                    +         +    G  D  ++I D + V                     
Sbjct: 510 TLLAILADILDYTRMDAEELQLQPGPCDPLRIIRDVMTVYAPQAEKKGLGFVLDSSRPAP 569

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI------FSLKINGNLAR 159
           G  I  +R   +IL  L   A      G     +  D++            +   G    
Sbjct: 570 GFVIVDARRLQQILDKLTANAVKFTHEGEIRLATWLDTETPAGGSGRLAICVTDTGIGI- 628

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  I +                 +       LA      L  E   D     +  +
Sbjct: 629 PDALHESIFEPFVQADGSHTRRYGGTGLGLAIARRLAEALGGTLSVESEPDQGSRFTLSI 688

Query: 214 E 214
            
Sbjct: 689 P 689


>gi|254418240|ref|ZP_05031964.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196184417|gb|EDX79393.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 486

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 63/242 (26%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAI----HNSLELLDEVGIED 47
            +     L  +         L A+  + + + H++  P+ AI      S  LL     + 
Sbjct: 237 RRAQERRLQELQSELVHVSRLTAMGEMATALAHELNQPLSAIASYTMGSTTLLASPKPDL 296

Query: 48  EVM--------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDK 98
           + +             +        +F+          D +  + +   +          
Sbjct: 297 DKVRNALSAAGDQALRAGDIIKRLREFVAKGETEHVLADPVKLMEEASALALVGAKDQGM 356

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD------SKNENIFSLK 152
           RV +++      +  ++ ++      +   ++   G                +   F++ 
Sbjct: 357 RVDLAFDRNTGPVIVDKVQVQQVALNLIRNAIDAMGDAPKRALHIAVAEDDGDMVRFTVS 416

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G          ++    V +  D   I       +   +  R+  E   +        
Sbjct: 417 DTGPGVPET-VLERLFQPFVTTKPDGMGIGLSICRGIIMAHGGRIWAENPPEGGARFIFT 475

Query: 213 LE 214
           L 
Sbjct: 476 LP 477


>gi|253699901|ref|YP_003021090.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251774751|gb|ACT17332.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 584

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 59/227 (25%), Gaps = 25/227 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLK 65
             +     + + H++ +P+  I    E L       +    +  + +I+  +      ++
Sbjct: 356 EKIRRDFVANVSHELRTPVTVIKGYAETLLSGALAADPQRAERFLLIIQNHADRLSGLVR 415

Query: 66  FMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KIDLSR 113
            +       +      +  +     I Q +       +   V                  
Sbjct: 416 DLLTLSELESGEMGMQLKPVALDEAIRQALLLVGQRGEEKGVQLEQPAGEAGLTVQADRG 475

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
              ++L+NL   A      G  V +      +    S++ +G      +   ++ +    
Sbjct: 476 RLEQVLINLLDNAIKYSETGKSVGVETAREGDLVRVSVRDSGIGIPEKDLP-RLFERFYR 534

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +    V  +   +   L  +       V S  L 
Sbjct: 535 VDEARSRDNGGTGLGLSIVKHIVQAHGGTLDVKSEQGKGSVFSFTLP 581


>gi|167629664|ref|YP_001680163.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592404|gb|ABZ84152.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 328

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 57/234 (24%), Gaps = 36/234 (15%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            L S I H++ +P+ AI   L  + +     + E + +I    +     ++ +       
Sbjct: 88  QLVSDISHELGTPMTAIQGYLRAMLDGIVAPDQENLTMIYEKVLLVNQLVEDLFDLSKLE 147

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------------WTGEKIDLSRERAK 117
               S         +    +       +                               +
Sbjct: 148 FGQPSFDLKSVKPHLFASDLIRKYGADIRRRGYRFESTLDLPFPEADEFVLSVDMMRIEQ 207

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNE--------------NIFSLKINGNLARF--- 160
           ++ NL   A    P GG + +     +++                 S+  +G        
Sbjct: 208 VMNNLIANALKYTPPGGTIRLCFCCERSDGKALPGGQAPPTAVFTVSVVDDGPGIDEAAL 267

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P  F +        + +   +       +   +  R+  E            L 
Sbjct: 268 PHVFDRFYRAERSRSTEGAGLGLAIARQIVIGHGGRIGVESQPGKGSTFYFTLP 321


>gi|85703111|ref|ZP_01034215.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. 217]
 gi|85672039|gb|EAQ26896.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           sp. 217]
          Length = 348

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 18/240 (7%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +++     +  +     + + H++ +P+ A+   +E L      +    D  + +++  +
Sbjct: 102 EDLTEREHAAQMRRDFVANVSHELRTPLTALMGFIETLQGPARHDQAAIDRFLGIMQSEA 161

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108
                 ++ +                              +          +        
Sbjct: 162 ARMERLVRDLLSLSRVESEERVRPRDEVNLGQVIGSVLHALRPLARDRACDISFDPPEGM 221

Query: 109 IDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNE-------NIFSLKINGNLAR 159
           +    +    ++  NL   A      G  +TI+++ +  +        +  ++  G    
Sbjct: 222 VVRGNDDQLQQVFTNLIENAIKYGGTGNHITITLERTPRDATLRAPAIVARVRDQGPGID 281

Query: 160 FPEKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +    +    +    V  + + ++ RL            S +L 
Sbjct: 282 PLHIPRLTERFYRVDTHRSREMGGTGLGLAIVKHIVNRHRGRLRISSTPGEGAEFSVILP 341


>gi|115359896|ref|YP_777034.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
 gi|115285184|gb|ABI90700.1| periplasmic sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 1022

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 63/245 (25%), Gaps = 33/245 (13%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           +   +   + + D       + L +   H+I +P+  I  +LELL+   ++      ++ 
Sbjct: 484 LVHQLEEAVRAADSANAAKSSFLAAT-SHEIRTPLNVILGNLELLERTALDASQQSRVQT 542

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              SA   L  +     ++      + +  IE  +   I  +                  
Sbjct: 543 LRASAEGLLAIVSDILDFSKIEAGAMTVESIEFDVIAVIERELAAFAPVARAKGLPLFAD 602

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKING 155
           +  S            A+++ NL   A      G  V             E    ++  G
Sbjct: 603 IDASAAQRMRGDPTRLAQVVGNLLGNAIKFTSEGRIVARVAVGHDVRGRPELAIGIEDTG 662

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +   ++          +        +       L       +          + 
Sbjct: 663 IGIDPAQ-HARLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGTISVHSAPGVGSLF 721

Query: 210 SALLE 214
           +  L 
Sbjct: 722 TVRLP 726


>gi|329923220|ref|ZP_08278706.1| sporulation kinase A [Paenibacillus sp. HGF5]
 gi|328941546|gb|EGG37836.1| sporulation kinase A [Paenibacillus sp. HGF5]
          Length = 357

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 69/224 (30%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMS 59
           +     + S  L     L + I H+I +P+ +I   ++L+       DE   +I      
Sbjct: 131 QEEKRLIQSDKLSMAGQLAAGIAHEIRNPMTSIKGFVQLIRSGAGRKDEYFDIISSEIER 190

Query: 60  AI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDL 111
                   L   +         D    L  +  ++     +     ++            
Sbjct: 191 IELIVSELLFLAKPQSVKFERADIRQLLDQVITLLNTQAIIHNVEIITDFGEQEANVDGD 250

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                ++ +N    A  S+P GGK+TI   + S          NG         +++ + 
Sbjct: 251 VNHLKQVFINFIKNAVESMPDGGKLTIRLERGSDQTVAIHFTDNGCGIPES-ILSRLGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    + + F     +  +++ ++           ++ +L 
Sbjct: 310 FFTTKEKGNGLGFMISKKMIEDHRGQVHVTSKLQEGTTITVMLP 353


>gi|328949556|ref|YP_004366891.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
 gi|328449880|gb|AEB10781.1| integral membrane sensor signal transduction histidine kinase
           [Marinithermus hydrothermalis DSM 14884]
          Length = 373

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 62/227 (27%), Gaps = 24/227 (10%)

Query: 11  SMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAII 62
           +  L A       L + I H++ +P+  + + LE L +     + E ++ +         
Sbjct: 136 ADRLAAEEAQTRRLVADIAHELRTPLTVLKSELEALADGLLSPDPETLERLVEEVDLLAR 195

Query: 63  RLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLS 112
            +  +R                V     +  + +      A    + V  +         
Sbjct: 196 LVGDLRLLSLAEAGGLELAREDVPLRDLVRRVAEGFAPRAAAKGVRLVVTAAPVTVHADP 255

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD 169
               ++LLNL   A    P GG + + V          +   G        P  F +   
Sbjct: 256 GRLRQVLLNLLDNALRHTPAGGCIAVGVHAEGAAV-LEVADTGPGIPEAHRPHVFERFYR 314

Query: 170 GNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           I    V  L   +  R+      +   V    L 
Sbjct: 315 PDPARSRAFGGSGIGLAIVKALVEAHGGRVEAMNRPEGGAVFRVRLP 361


>gi|319653175|ref|ZP_08007277.1| hypothetical protein HMPREF1013_03892 [Bacillus sp. 2_A_57_CT2]
 gi|317395096|gb|EFV75832.1| hypothetical protein HMPREF1013_03892 [Bacillus sp. 2_A_57_CT2]
          Length = 358

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 53/215 (24%), Gaps = 17/215 (7%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              L   I H+I +P+  +   L+LL        +++  ++       A   +     A 
Sbjct: 142 AGQLA-GIAHEIRNPLTTVKGFLQLLKPYLLEIGKEQYAEIAIEEINRANDIIYEFLNAS 200

Query: 72  GYTGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
               +  + I +             +    +  + V           +  +I   L  + 
Sbjct: 201 KPPQNKRTEIEVNRLVKEMKIFFESEAHIRNINISVCLCPNNPIFYGDVKQIKQVLINII 260

Query: 127 HASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
             ++     +                +   +++ NG          ++      +     
Sbjct: 261 RNAMEACESIPAPEGKIDLKAKALNQKVSITIQDNGLGMSEKTIS-KLFVPFYTTKEKGT 319

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I       +  E+  ++          V      
Sbjct: 320 GIGLSICQKIIEEHDGKINVHSKMSQGTVFEIEFP 354


>gi|310817666|ref|YP_003950024.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390738|gb|ADO68197.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1142

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           MA++   N +  + +A++     H++ +P+ A+    ++L     +  I+++ + +I  +
Sbjct: 754 MAESQAANRAKDEFLAVM----SHELRTPLTAVLGWTQMLRTRRNDPAIQEKGLDVIERN 809

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----W 104
           + S    ++ +             +  +VD    +    +V+           V      
Sbjct: 810 ARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTLVMEAGVG 869

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
            G          ++  NL + A    P GG+V + V+    E    +K +G   R    P
Sbjct: 870 GGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALP 929

Query: 162 EKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
             F +     G+         +    V  L   +   +  E     H    +  L 
Sbjct: 930 HLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 985


>gi|297568619|ref|YP_003689963.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924534|gb|ADH85344.1| multi-sensor hybrid histidine kinase [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1263

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 67/240 (27%), Gaps = 31/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S     +   + + H+I +P+ A+    +LL +  + +E    +R    S+ 
Sbjct: 532 ARREAERASRAK--SEFLANMSHEIRTPMNAVIGLSQLLAQTELNEEQRDQVRKIHQSSR 589

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +                    +         V   +     ++V    + +   +     
Sbjct: 590 MLLGIINDILDFSKIESGRLELECRDFRLNEVVEQVATLFGDKVHAGGLELLYDIPPHLP 649

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIFSLKINGNLAR 159
              +  S   ++IL+NL   A     RG       +V   V + +    F ++  G    
Sbjct: 650 RTLVGDSLRLSQILVNLLSNATKFTERGGTVELGIRVVAPVANDQATLRFHVRDTGIGM- 708

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+  ++                   +       L  +    L  E         S  L
Sbjct: 709 SKEQLARLFRPFSQADTSTTRRYGGTGLGLVISRRLVEKMGGELEVESAPGKGSTFSFTL 768


>gi|154490985|ref|ZP_02030926.1| hypothetical protein PARMER_00902 [Parabacteroides merdae ATCC
           43184]
 gi|154088733|gb|EDN87777.1| hypothetical protein PARMER_00902 [Parabacteroides merdae ATCC
           43184]
          Length = 576

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 24/234 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE + L   
Sbjct: 342 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLKLLEDKRIGDMNDEQIALAGS 399

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
              S+   L+     +++     G +     +    ++I+  I  +          ++V 
Sbjct: 400 IRESSDRLLEITGELLKMTQVEAGKLQLNPKITKPIELIDYAIKANRVQAERFNCHIEVE 459

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +   L  +  KI   L      A    P  G++ I       +    ++  G     
Sbjct: 460 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIVIGAHQVDKKVEIFVQDFGKGIDP 519

Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +          + +    +           +   +  +            
Sbjct: 520 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTIRVDSEVGKGSTFVIT 573


>gi|83310211|ref|YP_420475.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945052|dbj|BAE49916.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 687

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 58/236 (24%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H++ +P+ AI    E+L E   +     LI   +    
Sbjct: 192 AKQAAEAANQAK--SSFLANMSHELRTPLNAIIGYSEMLQEEMEDLGQDDLIPDLAKIHS 249

Query: 62  I-------RLKFMRLAFGYTGSVDS--------LIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                       + ++    G +D          +    +  +          + V   G
Sbjct: 250 AGRHLLTLINDVLDISKIEAGKMDLFVEAFEIAPMVADVVATISPLIQKNGNTLVVDGAG 309

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKF 164
           E   +  +  K+   LF +   +       TI+   +       F++   G      E  
Sbjct: 310 EIGAMEADLTKVRQTLFNLLSNASKFTSDGTITLSTRRQGEWIEFAVADTGIGMAPAEL- 368

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                   +               +            +  L 
Sbjct: 369 DRLFQAFSQADASTTRKFGGTGLGLAISRTFCRMMGGDIAVASEPGRGTTFTVRLP 424


>gi|117926280|ref|YP_866897.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610036|gb|ABK45491.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 968

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 64/234 (27%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S     +   + + H+I +P+ AI    ELL E   + E ++ + + + +  
Sbjct: 585 AKERAEAASQAK--SEFLAMMSHEIRTPMNAILGITELLQEQPSKKEQLEFLTVQAKAGQ 642

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
                                  T   D    L  +  ++E             +    +
Sbjct: 643 ALLTLINDILELSRLEAGREQLQTAPFDLYELLRSVSTLLEPSAKHKGLSVHLEIAEGLS 702

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
              I   R   ++L+NL         RG  + IS Q   N     +K +G          
Sbjct: 703 PNWIGDERRLRQVLINLVGNGIKFTNRGS-IWISAQPMANGLEIRVKDSGAGINPRHHDK 761

Query: 164 -FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +           +       L       +  E   D     +  L 
Sbjct: 762 IFERFHQVDSTATRKHGGTGLGLAITKKLMDLMGGEIRMESQPDQGSCFTLALP 815


>gi|258593570|emb|CBE69911.1| Periplasmic sensor signal transduction histidine kinase precursor
           [NC10 bacterium 'Dutch sediment']
          Length = 493

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 72/247 (29%), Gaps = 36/247 (14%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLI 53
           K +   L  +  L ++  L S I H+I +P+  I+ S++ L       + G  +E   L+
Sbjct: 243 KELEQRLHQAERLSSIGQLASGIAHEIRNPLNFINLSIDHLQSRFSPADPGSREEFTYLV 302

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWT 105
                        +     Y   +                ++ V          +     
Sbjct: 303 SWVKSEIHRLNTMITNFLTYGKPLKLQPRPSDLTSLLHDVVKMVSGKAEEQGIEIDCGSL 362

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK---------------NEN 147
                LS +  +I          A  ++P+GGK+ I+ +                     
Sbjct: 363 EALPILSVDGEQIRTCFVNVLVNALQAMPQGGKLAIATRLVNETDSSGGPSPLAASRRWI 422

Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             S +  G+     +   ++ +    +      +       +  E+   +  E I +   
Sbjct: 423 EVSFQDTGHGIATADLP-RVFEPYFTTKEVGIGLGLALTKKIVEEHGGTIALESIPNRGT 481

Query: 208 VLSALLE 214
            +S  L 
Sbjct: 482 TVSIRLP 488


>gi|260778718|ref|ZP_05887610.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604882|gb|EEX31177.1| signal transduction histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 675

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 62/235 (26%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
           + +     + +  L AL  L + I H+I +P   I  ++EL+      +     E +  I
Sbjct: 430 LNQTRDKLVINEKLAALGELTAGIAHEINNPTAVILGNVELMQFELGNDSQRVQEEIDAI 489

Query: 54  RLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      + +              +      +     + +      AV     +  
Sbjct: 490 HAQIDRVRNITRSLLQYSRQGGVQDEITWQHINPIIEESITLVKTGSKKRAVQFITDLKA 549

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +  +IL+NL M    ++                D +   I  +   G    
Sbjct: 550 KNSVEVNRHQLLQILVNLEMNGIHAMSGEGTLTISSEDWIENDQELGAIIHVADEGCGI- 608

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +I      +  +   +       +  +    L  E         S  L 
Sbjct: 609 KPENLARIFSPFYTTKREGTGLGLSVSQSILSQTGGELKAESEWGIGSKFSIYLP 663


>gi|320011789|gb|ADW06639.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           flavogriseus ATCC 33331]
          Length = 384

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 51/221 (23%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 156 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 215

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                          VD    +    Q          R  V        L  +     ++
Sbjct: 216 ISRIDSGRLELRRQPVDISAAVERHVQAHTANGQSPDRFLVRTRQPLPALWADPDKVDQV 275

Query: 119 LLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L NL   A                   ++ ++    ++   G                  
Sbjct: 276 LGNLLENAVRHGEGTVTIEIAPAPAPAKNDESGTAVTVSDEGPGIPEESMGRVFTRFWRG 335

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +  Y V  +   +   +  +           +L 
Sbjct: 336 SKRGGTGLGLYIVKGIVEAHGGTITVDRAPGGGAEFRFILP 376


>gi|237719307|ref|ZP_04549788.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229451167|gb|EEO56958.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 533

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    NL  +    L  + + H+I +P+ AI     LL E   + E    +        
Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106
             L  +         +++      ++ +       D                        
Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIKEDKPVPVLLAPDLPEY 418

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                 +   +++ N    A      G  +      +++    F++   G      +   
Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAESNEIEFAVTDTGMGIAPDKVDQ 478

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    S      +       +       +  E            
Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGAESEIGVGSRFWFT 526


>gi|237713651|ref|ZP_04544132.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406251|ref|ZP_06082800.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643736|ref|ZP_06721535.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810105|ref|ZP_06768776.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446373|gb|EEO52164.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262354954|gb|EEZ04045.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640920|gb|EFF59139.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442709|gb|EFG11505.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 533

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    NL  +    L  + + H+I +P+ AI     LL E   + E    +        
Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106
             L  +         +++      ++ +       D                        
Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIKEDKPVPVLLAPDLPEY 418

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                 +   +++ N    A      G  +      +++    F++   G      +   
Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAESNEIEFAVTDTGMGIAPDKVDQ 478

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    S      +       +       +  E            
Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGAESEIGVGSRFWFT 526


>gi|325923655|ref|ZP_08185280.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325545854|gb|EGD17083.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 664

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +        + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 268 LESERTARNEAESMARFKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPTYKGLSVI 327

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                    +      L   E   E    + +   
Sbjct: 328 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVHEALTTQELAAEGKDQILEVHV 387

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ ++++      + S++ +G+     
Sbjct: 388 PDTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIERDDGHLLVSVRDSGDGIAAE 447

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 448 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 506


>gi|315646641|ref|ZP_07899758.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315277967|gb|EFU41288.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 484

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 60/212 (28%), Gaps = 18/212 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72
           S I H++ +P+ +I    E LD    +       MQ+I   +   I  ++ +        
Sbjct: 250 SSISHELRTPLTSIKGWSETLDSGGYDPEETKIGMQIITKETDRLIGLVEELLDFSKLQQ 309

Query: 73  --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                        + L  +        +   +  ++           +    ++ LN+  
Sbjct: 310 NEMKLVKGIVNLRELLQEIMLNLWTKAEKKGIQIKLVSDEKPIIYGDANRLKQVFLNIVD 369

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQ 182
            A       G + +S    +   I ++K +G      E   ++ D   +         + 
Sbjct: 370 NAVKFSHENGAINLSFTIEEKFVIVTVKDHGIGI-SDEHLRRVKDRFFQVNPLNGGTGLG 428

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 L   +   +  E        +   L 
Sbjct: 429 LAITQQLIELHGGAMEMESELGQGTSVIVKLP 460


>gi|167769066|ref|ZP_02441119.1| hypothetical protein ANACOL_00389 [Anaerotruncus colihominis DSM
           17241]
 gi|167668706|gb|EDS12836.1| hypothetical protein ANACOL_00389 [Anaerotruncus colihominis DSM
           17241]
          Length = 877

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +       +  L A L   I HD+ +P+ AI  +   L       D    E     +  
Sbjct: 636 KEAAAVLAKNEQLRANLLRSISHDLRTPLTAISGNASNLLSNGKLFDAQTKEQMYTDIYD 695

Query: 55  LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +                 +        T  +D +I         +         +    
Sbjct: 696 DAMWLINLVENLLSVSRLEEGRMNLHMSTELMDEVIAEALRHINRKSADYHLIVREPDEY 755

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  R   ++L+N+   A    P G  + I  +   +  + S+  NG       K  
Sbjct: 756 ILVQIDVRLIVQVLINIIDNAIKYTPVGSDIRIEWKKQGDFVLVSIADNGPGISAEAKPH 815

Query: 166 QIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S     +  S  +       + + +   +       H  + +  + 
Sbjct: 816 IFEMFYSASAKIADSRRSMGLGLALCKSIVNAHGGEISVADQIPHGTIFTFSIP 869


>gi|32401164|gb|AAP80772.1|AF525283_4 MmoS [Methylococcus capsulatus]
          Length = 1177

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 28/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A L   + H+I +P+  +   LELL +  +  E   L+  +S SA   L+ +     ++ 
Sbjct: 523 AFLA-NMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFSK 581

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +   E  + D +                  +  +        I       +IL
Sbjct: 582 LEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQIL 641

Query: 120 LNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            NL   +     RG      +Q        +  F ++  G     P+   ++        
Sbjct: 642 TNLLGNSVKFTERGEVSVKVMQGEAGAKRTDLSFEIRDTGIGI-APDVQARLFQPFTQAD 700

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       L       +  E            L 
Sbjct: 701 GSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLP 745


>gi|313149369|ref|ZP_07811562.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313138136|gb|EFR55496.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 398

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 69/230 (30%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
           AK    N        L  + + H+I +P+ AI    ELL    E   + + ++++  +S 
Sbjct: 21  AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAATEEKEKQKYLEILHTNSE 78

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105
             +  +                    VD  + L D+EQ+    I  D  VQ+       +
Sbjct: 79  LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLFHMKIGYDSPVQIITEAGLPS 138

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A      G          +N   F +   G+     +   
Sbjct: 139 CMVHSDRNRIAQVVSNFVSNAIKFTTEGSIRIGYKPC-ENGLRFYVTDTGSGISADKLGG 197

Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++S  +   +       + ++    +  E +          L 
Sbjct: 198 VFDRFVRLQSDKNGTGLGLSICKTIVNKLGGEIGAESVVGQGSTFWFTLP 247


>gi|255011543|ref|ZP_05283669.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 3_1_12]
          Length = 557

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 69/230 (30%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
           AK    N        L  + + H+I +P+ AI    ELL    E   + + ++++  +S 
Sbjct: 180 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAATEEKEKQKYLEILHTNSE 237

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105
             +  +                    VD  + L D+EQ+    I  D  VQ+       +
Sbjct: 238 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLADLEQLFHMKIGYDSPVQIITEAGLPS 297

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A      G          +N   F +   G+     +   
Sbjct: 298 CMVHSDRNRIAQVVSNFVSNAIKFTTEGSIRIGYKPC-ENGLRFYVTDTGSGISADKLGG 356

Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++S  +   +       + ++    +  E +          L 
Sbjct: 357 VFDRFVRLQSDKNGTGLGLSICKTIVNKLGGEIGAESVVGQGSTFWFTLP 406


>gi|229012457|ref|ZP_04169632.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048]
 gi|228748816|gb|EEL98666.1| hypothetical protein bmyco0001_29010 [Bacillus mycoides DSM 2048]
          Length = 448

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 72/239 (30%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +A N      S+     +     S + H+  SP+ +I    + L             +++
Sbjct: 211 LATNFQKMTKSIKELDQMRQEFVSNVSHEFQSPLSSIQGFSKTLQSENMSEEERKRYLKI 270

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWT 105
           I   S       K +            L       Q        + ++   +K + V + 
Sbjct: 271 IEGESKRMSSLCKQLLTLASLDKEEKVLQIKEFNLQKQIKDVIFMLEWKWREKDIAVEFD 330

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              I +  +     ++  N+F  +      GG +   V++ ++  + S+  NG      E
Sbjct: 331 VPDISIEGDENLLHQVWSNIFTNSIKFSNDGGTIEFVVEELESGIVISISDNGIGM-EQE 389

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +I D            ++   +    V  +   ++  +           +   L K
Sbjct: 390 EMDRIFDRFYKVDTARARNVEGSGLGLSIVQKIVELHQGNVSVYSTKGEGTTVRVELPK 448


>gi|158521787|ref|YP_001529657.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510613|gb|ABW67580.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 519

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 62/241 (25%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
                  + +  L ++  L + I H+I +P+G +   LE+L++         + ++    
Sbjct: 268 QNRQNELIRAEKLASVGRLAAGIAHEIGNPVGIVLGYLEMLNDPALSPADRQDYLKRCEA 327

Query: 56  SSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW---TGE 107
                       L F R A      V     + +    +       D      +      
Sbjct: 328 EINRINTTIRELLDFSRPAGEKPCPVALSRVIEETLRMLNVQPGMKDITFSCDFAAANDT 387

Query: 108 KIDLSRERAKILLNLFMVAHAS------------LPRGGKVTISVQDSKNENIFSLKING 155
            +       ++ +NL + A  +                        +       S+  NG
Sbjct: 388 VMAPPDRLRQVFVNLVINAADALASVSDQQEGRITITTKNHCPDAGNGPEMVEASVIDNG 447

Query: 156 NLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P+    + D    +        +      ++       +  +       VL   L
Sbjct: 448 PGIAAPDL-DLVFDPFYTTKEPGKGTGLGLSVCFMIIESLGGTIRIDSNRGQGTVLRIEL 506

Query: 214 E 214
            
Sbjct: 507 P 507


>gi|332703196|ref|ZP_08423284.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553345|gb|EGJ50389.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 585

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 24/228 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSS 57
            +  + ++  L + + H+I +P+  I+    L+ +               + M  I  S 
Sbjct: 341 HADKMASIGRLAAGVAHEINNPLAIINEKAGLIKDLFTYRQEYQSDPRLMKHMDSIIASV 400

Query: 58  MSA----IIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS 112
                     L F R        V     + ++   + ++       V++       D+ 
Sbjct: 401 QRCGTITKRLLSFARHLDVCLQPVGVRKVVEEVLGFLHKEAEYRSIEVKLQGGENLPDVV 460

Query: 113 RER---AKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +R    +I LNL   A  ++  GG        +       ++  +G      +   +I 
Sbjct: 461 SDRGQLQQIFLNLINNAFQAMSDGGHLAIAISPEPNGGLSVAVSDDGCGISETD-QKRIF 519

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +        +       L  E   R+       H    +  L 
Sbjct: 520 EPFYTTKASKGGTGLGLSITYSLVQELGGRVDLVSEVGHGTTFTVRLP 567


>gi|310825009|ref|YP_003957367.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398081|gb|ADO75540.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 837

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 75/240 (31%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIED 47
            K +   L  S  + ++  L + I H++ +P+  +  +LE +             V    
Sbjct: 458 RKQMQARLMLSDRMASMGTLSAGIAHELNNPLSYVIANLEFVHATLQPAEFDPARVPEWR 517

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +V+   R  +      ++ ++            + L  +   +      + + +     +
Sbjct: 518 QVLDEAREGAERVRQIVRQLKTFSRVEEERQEQVELHRVLDSVAQMATSEVKHRARLVKQ 577

Query: 108 KID------LSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGN 156
                       +  ++ LNL + A  ++P G          + +D +   +  ++  G 
Sbjct: 578 YGPLPAITGNDGKLFQVFLNLVINAAHAIPEGCVEDHEIRLATFEDERGWAVVEVRDTGG 637

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE  ++I +    +        +     + L   +   +  E       V   +L 
Sbjct: 638 GI-RPENLSRIFEPFFTTKPQGVGTGLGLSICLTLVRAHGGDITVESTVGKGTVFRVMLP 696


>gi|310824308|ref|YP_003956666.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397380|gb|ADO74839.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1212

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 60/243 (24%), Gaps = 30/243 (12%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
            +       + +  + A+  L + + H+I +P+  I ++L             +  +    
Sbjct: 818  LQSTRERLVHAEKMAAVGTLAAGVGHEINNPLAFIISNLHYASLEVKHAAQQEPDQERWA 877

Query: 58   -----------------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                                     F R+   +   VD    L       +  +    RV
Sbjct: 878  EVEQALSEALLGADRVRRIVQDLKTFSRVQPEHPQRVDLHEVLELALSFADAEVRHRARV 937

Query: 101  QVSWTGEK--IDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKI 153
               +              ++ LNL + A  + P            + QD K + + ++  
Sbjct: 938  VKDYGTVPAVFGDEARMGQVFLNLVINAAQATPEGHADEHEIRITTRQDEKGQAVVAVSD 997

Query: 154  NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             G     PE   +I +    +        +               +              
Sbjct: 998  TGIGI-PPEVLPRIFEPFFTTKPVGVGTGLGLSICHGYVQALGGDIRVHSTLGSGTTFEV 1056

Query: 212  LLE 214
             L 
Sbjct: 1057 TLP 1059


>gi|229016688|ref|ZP_04173621.1| hypothetical protein bcere0030_12590 [Bacillus cereus AH1273]
 gi|229022900|ref|ZP_04179420.1| hypothetical protein bcere0029_12460 [Bacillus cereus AH1272]
 gi|228738435|gb|EEL88911.1| hypothetical protein bcere0029_12460 [Bacillus cereus AH1272]
 gi|228744596|gb|EEL94665.1| hypothetical protein bcere0030_12590 [Bacillus cereus AH1273]
          Length = 402

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCSEKERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++                 + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQKLQVEEELLHALSLITPLANLTNVRIHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+F     ++P GG + +++          +K  G     PE+  ++   
Sbjct: 295 ERQKLNQCLLNIFKNCIEAMPNGGDLILTLVPDHKHIQLYIKDTGVGM-DPEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVIQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|254412809|ref|ZP_05026582.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180544|gb|EDX75535.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 622

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 59/229 (25%), Gaps = 22/229 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57
           ++  +   ++  A + S   HD+  P+  I +  +LL            D+ +  I  ++
Sbjct: 396 DLARSNQDLEQFAYVAS---HDLREPLRKIRSYSDLLVKRYRGKLDERADKYIAYITDAT 452

Query: 58  MSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 +  +      +             I    +  +          +      +   
Sbjct: 453 QRMQSLISDLLTYSRVSKPELIPEPTDLGHILKKTLADLSPLIKENKAIITTDSLPQVNA 512

Query: 111 LSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              + A++L NL          +  ++ I+          +++ NG      +   +I  
Sbjct: 513 NPTQMAQLLQNLITNGIKFRTQQPPRIHITATREGQFWQIAVQDNGIGM-DTQYCDRIFV 571

Query: 170 GN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          I       +   +  ++  E            L 
Sbjct: 572 IFQRLHYREEYPGTGIGLAVSKKIVERHGGQIWVESELGQGTTFYFTLP 620


>gi|170757594|ref|YP_001782071.1| putative phosphate regulon sensor protein [Clostridium botulinum B1
           str. Okra]
 gi|169122806|gb|ACA46642.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 569

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   D+    ++ +Q+I   +      +  + 
Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + ++ +        I    +  +
Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEKIPLLIGNKDKYNQ 463

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G V+I  +  K   +F ++  G      E   +I +        
Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|197119322|ref|YP_002139749.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088682|gb|ACH39953.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 1004

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 19/233 (8%), Positives = 51/233 (21%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHN---SLEL-LDEVGIEDEVMQLIRLSSM 58
           +    N+  ++ + +L   I HD  + +  I       +L L         +     +  
Sbjct: 626 EAQMLNMQKLESLGVLAGGIAHDFNNILTGIVGNISFAQLALPAAHKAGAPLLKAEKACQ 685

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113
            A      +         +     +  +       +     V                  
Sbjct: 686 RAAELASQLLTFARGGQPIKKAFSVKPLVGESLSLVLRGTNVKGVIDIADDLCVIEADEG 745

Query: 114 ERAKILLNLFMVAHASLP------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +  +   N+ + A  ++P                              S    G      
Sbjct: 746 QINQAFNNIIINAVHAMPGGGTLTVTGEDAVMEAGNRFGLTQGPYVRLSFSDQGCGIPKA 805

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D    +      +       +   +   +L +   +     +  L 
Sbjct: 806 DL-EKIFDPYFTTKTSGTGLGLASTHSIVTRHGGMILVDSAPEKGSTFTIYLP 857


>gi|86606313|ref|YP_475076.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86554855|gb|ABC99813.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1459

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 61/227 (26%), Gaps = 29/227 (12%)

Query: 16   ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-------SAIIRLKFMR 68
            +   + I H+I +PI AI     LL +  ++ +    ++                L F +
Sbjct: 825  SEFLATISHEIRTPINAIMGMAGLLLDTSLDAQQRDWVQTIRYGSEVLLSLINDILDFSK 884

Query: 69   LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKIL 119
            +        ++   L  + + + D +A   +         V  +     +       +IL
Sbjct: 885  IESQKLELEETPFSLPQLMEELLDLMAAQAQSKDLELVAWVDPALPATLVGDPNRLRQIL 944

Query: 120  LNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-- 171
             NL   A    P+G             Q       F ++  G     PEK  ++      
Sbjct: 945  ANLLSNAIKFTPQGEVVVTVEAQEQDPQAQVQWVSFQVQDTGIGI-PPEKQDRLFKPFSQ 1003

Query: 172  ----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +        +       L       +  +            + 
Sbjct: 1004 VDSSISRQYGGTGLGLAISQRLCQLMGGTIWVQSQPGQGSTFGFRIP 1050


>gi|323706069|ref|ZP_08117638.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534513|gb|EGB24295.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 456

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 69/215 (32%), Gaps = 19/215 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLKFMRLAFGY 73
           S + H++ +P+  +   +EL+D  G +++ +       L +      I+  + + LA G 
Sbjct: 241 SNVSHELRTPLSILKGYIELIDRWGKDNKDVLEESIGALKKEEQEMEILIERLLMLARGD 300

Query: 74  TGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             +++    L ++ ++I          F   +  +      E         ++L  +   
Sbjct: 301 NKTLNINKKLFNVYELIAEIVRDAKVIFNGKNIEIFCDKNLEVYADRNLIKELLRIILDN 360

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--TIDSHD 180
           A       G +     ++ N    ++K +G      E    F +    +           
Sbjct: 361 ALKYTDIDGNIKFYAGEADNNVAVTIKDDGIGIPEEEIPYIFDRFYRVDKARSKETGGMG 420

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +      L+   +   +  +   +        + K
Sbjct: 421 LGLSIAKLIVELHGGSIEVKSKLNEGSEFKITIPK 455


>gi|302341482|ref|YP_003806011.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301638095|gb|ADK83417.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 597

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 16/223 (7%), Positives = 58/223 (26%), Gaps = 21/223 (9%)

Query: 13  DLVAL--LCSRICHDIISPIGAIH----NSLELL---DEVGIEDEVMQLIRLSSMSAIIR 63
            L ++  L + + H+I +P+  I+       +LL   D+    D+ ++   +   S    
Sbjct: 344 KLASIGRLAAGVAHEINNPVAIINEKVGLMKDLLAVSDDFAHRDKFLKQAAVIQDSVKRV 403

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   G+   +        +E         +  +    +  + +    +   +  ++
Sbjct: 404 SDITHRLLGFARHLPVKYEQIHLEALLREVLGFLGREAQYRNVTIDMDIHDDLTAIEADK 463

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGN 171
            ++      + + ++            +          ++  +G      +         
Sbjct: 464 GQLQQVFLNIINNAMAAVADGGRIAIAAGLDDARHVAVTVSDDGVGIPPEDLKRIFEPFF 523

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  +   R+              +L 
Sbjct: 524 STKGERGTGLGLSITYGIVRKLGGRIEVSSAPGEGTTFKIVLP 566


>gi|322420355|ref|YP_004199578.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126742|gb|ADW14302.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 947

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHN---SLELLDEV-GIEDEVMQLIRLSSM 58
           +     +  ++ + LL   I HD  + +  +       ++L +      + +     +S+
Sbjct: 567 QQEQLKIEKLESLGLLAGGIAHDFNNILTGVMGNISFAQMLLDPSHKSFKPLAEAEKASL 626

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
            A    + +         V  +I L D+     + +     V+          + +    
Sbjct: 627 RATELARQLLTFARGGEPVRKIISLQDVVNESVELVLSGSNVKGIIDIPDATHAIDADEG 686

Query: 117 ---KILLNLFMVAHASLP------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
              ++L N+ + A  ++P               +      +  +    ++   G      
Sbjct: 687 QLSQVLHNIVINAAQAMPGGGTLTVTARNETLTETNDMSLNPGSYVRLTIADRGCGM-PE 745

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T+I D    +    + +       +   +   +  + + D   V +  L 
Sbjct: 746 AVMTKIFDPYFTTKSAGNGLGLASAYSIVTRHGGHIGVDSVLDRGTVFTIHLP 798


>gi|228919504|ref|ZP_04082868.1| hypothetical protein bthur0011_5290 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840147|gb|EEM85424.1| hypothetical protein bthur0011_5290 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 463

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 63/218 (28%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFSLA 295

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   E  +           + I  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAKKVNAIYKERYIKVSFSCPPTLLVNLDEQRFEQVII 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV         +++  G      +                  
Sbjct: 356 NILNNAYRHSKEHSHINISVTKEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                +    V  +   +   +      +H       L
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNISVTSEVNHGSCFIISL 453


>gi|229195757|ref|ZP_04322518.1| hypothetical protein bcere0001_13220 [Bacillus cereus m1293]
 gi|228587717|gb|EEK45774.1| hypothetical protein bcere0001_13220 [Bacillus cereus m1293]
          Length = 423

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----------I 109
              +                  +    +     +   +    + +               
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISINYNFSTELDNILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|168182604|ref|ZP_02617268.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|237795966|ref|YP_002863518.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182674114|gb|EDT86075.1| putative phosphate regulon sensor protein [Clostridium botulinum
           Bf]
 gi|229263502|gb|ACQ54535.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 569

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   D+    ++ +Q+I   +      +  + 
Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + ++ +        I    +  +
Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAENKNIKINIVGEKVPLLIGNKDKYNQ 463

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G V+I  +  K   +F ++  G      E   +I +        
Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|189425347|ref|YP_001952524.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189421606|gb|ACD96004.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 678

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 73/264 (27%), Gaps = 51/264 (19%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE---------------- 42
           +       L    + +  LL + + HDI +PIG + N+LE L                  
Sbjct: 408 LTSRQAIILHQDKMASIGLLAAGVAHDINNPIGFVTNNLEELRIYLTRLQAFIEEQQAII 467

Query: 43  ----------------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
                                         +  E ++     S        F R+     
Sbjct: 468 QASAPPEELKKLHEDWNQLGIEYILDDFGALIAESLEGAGRVSDIVKNLRNFSRVDDFAF 527

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPR 132
              D    L    ++ +  +    +V   +    +     ++  +  +NL + A  ++ +
Sbjct: 528 KLADINECLESSIKITQHELRHKAQVHRQFGEIPKIFCCPQQLNQAFMNLLVNAAHAIDK 587

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA 190
            G+VT+      +    S+   G      E   +I +    +        +    V  + 
Sbjct: 588 HGEVTLKSWSDSDGVHISIADTGCGI-PDELLPKIFEPFFTTKEAGKGTGLGLSIVADII 646

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             ++  +  +         +  L 
Sbjct: 647 KLHQGEINVQSRPGQGTTFTITLP 670


>gi|222053640|ref|YP_002536002.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221562929|gb|ACM18901.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 482

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 2   AKNICFNL-SSMDL--VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52
            +N+   L  +  L  V  L S I H+I +P+  I  +++ L             E+  +
Sbjct: 237 RENLEKRLYEAEHLSKVGQLASGIAHEIRNPLNYISLAIDHLKSELLPTCPERSKELEAI 296

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSW 104
                         +     Y   +           +         +       RV +  
Sbjct: 297 TDNIKEEVRKANYMVLNFMNYGRPLKLRTSEVRYADLIGKALPLLQDKLDEQRIRVAMDI 356

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLAR 159
             +   +  +   +   LF     A  ++P GG +T   +    +   I +    G    
Sbjct: 357 PADLPAMQVDAELMRNCLFNFITNAAQAMPEGGTITLGAAFAPEEKRFILTFADQGAGIA 416

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +I      +      +       +  E+   L            + +L 
Sbjct: 417 AGDIG-KIFQPYFTTKEAGIGLGLAITERIVREHGGELRVNSTVGSGTTFTMVLP 470


>gi|89054779|ref|YP_510230.1| histidine kinase [Jannaschia sp. CCS1]
 gi|88864328|gb|ABD55205.1| histidine kinase [Jannaschia sp. CCS1]
          Length = 346

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 61/234 (26%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64
            + ++     + + H++ +P+ ++   +E L      +   +D  + ++   +      +
Sbjct: 111 ETEEMRRDFVANVSHELRTPLTSVMGFIETLRGPARNDPAAQDRFLGIMEAEAGRMNRLI 170

Query: 65  KFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
             +            R       +V     +  +    +D     + +            
Sbjct: 171 SDLLSLSKVEAAERKRPTEQVDLAVLLEEVIAALRPRADDAGNRLELIHDDAPALVRGDH 230

Query: 113 RERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164
            +  ++ LNL   A            R  +      + +      +   G          
Sbjct: 231 DQLMQVFLNLAENALKYGGPGQPVTLRLSRGQGGGINGRAMIRVDVTDQGPGIDSQHLPR 290

Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    +    +    V  + + ++ RL       H    S  L 
Sbjct: 291 LTERFYRVDAHRSREMGGTGLGLAIVKHIVNRHRGRLKITSQQGHGSTFSVQLP 344


>gi|53804659|ref|YP_113669.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
 gi|53758420|gb|AAU92711.1| sensory box histidine kinase/response regulator [Methylococcus
           capsulatus str. Bath]
          Length = 1177

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 28/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A L   + H+I +P+  +   LELL +  +  E   L+  +S SA   L+ +     ++ 
Sbjct: 523 AFLA-NMSHEIRTPMNGVLGMLELLKDTDMSREQWDLVETASNSAESLLEIINSILDFSK 581

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +   E  + D +                  +  +        I       +IL
Sbjct: 582 LEAGKVEIERTEFNLPDLVEEVCALLAGRAHDKGLELNCFLPADLPRMWIGDPTRIRQIL 641

Query: 120 LNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            NL   +     RG      +Q        +  F ++  G     P+   ++        
Sbjct: 642 TNLLGNSVKFTERGEVSVKVMQGEAGAKRTDLSFEIRDTGIGI-APDVQARLFQPFTQAD 700

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       L       +  E            L 
Sbjct: 701 GSTSRRFGGTGLGLSICRNLVELMGGTIGLESAPGRGSRFWFTLP 745


>gi|99080247|ref|YP_612401.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
 gi|99036527|gb|ABF63139.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
          Length = 658

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     + S  L ++  + + + H+I +P+  I  +++++              + LI
Sbjct: 414 LEETFRQLVMSEKLASIGEITAGVAHEINNPVAVIQGNVDVMRMTLGDAAEPVRTELDLI 473

Query: 54  RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSW 104
               M     +  +           +   VD    + D   +++  I+  +     Q   
Sbjct: 474 DNQVMRIGAIVGKLLQFARPSEFGTFAEHVDVAAVVRDCLVLVDHVISKQEVRVLTQFDA 533

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
                    E  ++++N+ + A  ++   G + I     V+D++      +   G     
Sbjct: 534 APHVRIDPGELQQVVINIIINASQAMEGKGTLAISVAGEVRDAQTGVALRIADTGPGIPM 593

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +   +       L      R+               L 
Sbjct: 594 ERIDHIFDPFFTTKQGEGTGLGLSISQTLIQRAGGRITVRNRRARGAEFLIWLP 647


>gi|254415487|ref|ZP_05029247.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177668|gb|EDX72672.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 512

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 60/232 (25%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K +       +L +   +   H+  +P+  I +S ELL+  G +    + +        
Sbjct: 277 RKALAKEKELSELKSRFVTMTSHEFRTPLTTILSSAELLEHYGHKWTPDKKLTHIHRIQG 336

Query: 62  IRLK-----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 ++L       V+   GL +  Q+               
Sbjct: 337 TVKHLVQVLEDVTLIGKAEAGKLQLQPVSLDLVEFCHGLIEELQLSLGQHHSLVFTHQCP 396

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                   +    IL NL   A    P  G VT+++    +  IF +K  G      +  
Sbjct: 397 NLNVCMDEKLLRHILTNLISNAIKYSPNCGIVTLNLVCQDSSAIFQIKDQGIGIPLADQE 456

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             F           I    +    V          +          + +  L
Sbjct: 457 KLFEAFHRAQNVGNISGTGLGLAIVKRAVDLQGGEITVNSQVGEGTMFTVTL 508


>gi|152993487|ref|YP_001359208.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
 gi|151425348|dbj|BAF72851.1| two-component sensor histidine kinase/response regulator
           [Sulfurovum sp. NBC37-1]
          Length = 1065

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            ++    L + +  +L  + + H+I +P+  I    E+L    + DE  + + +   S+ 
Sbjct: 402 KEDKLIALQANEAKSLFLANMSHEIRTPLNGIVGFTEILRSTDLNDEQREFLSIIDKSSE 461

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105
             L  +      +    + I + ++     +                    +  +  +  
Sbjct: 462 NLLSIINNILDLSKIESNNIEIENVVFDAAEEFESAVETYAVGAAEKNIDLNFYMDPTIN 521

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLAR 159
            +      +  +IL+NL   A                     D      FS++ NG    
Sbjct: 522 PKLKGDPTKIKEILINLLSNAIKFTSYGGEVNLEIHQVQDEDDRMPRIKFSVQDNGIGM- 580

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++  +I D        V        +              +L  E   D        +
Sbjct: 581 TQDQQERIFDAFSQADVSVTRKYGGTGLGLTISSQFVELMGGKLELESAKDQGTTFFFTI 640

Query: 214 E 214
            
Sbjct: 641 P 641


>gi|53802741|ref|YP_115486.1| sensor histidine kinase [Methylococcus capsulatus str. Bath]
 gi|53756502|gb|AAU90793.1| sensor histidine kinase [Methylococcus capsulatus str. Bath]
          Length = 591

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 74/228 (32%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSS 57
           + ++    + +  L     + + + H++ +P+G +H S ++L    +   E ++L R   
Sbjct: 358 LQQSRQQVIHAAKLAMVGEMAAIMAHEVRTPLGILHTSAQMLQREPLLSAEGLELTRFML 417

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEKI 109
             +    + +             +   D+  ++              + R+  S   E  
Sbjct: 418 DESARLERLISTLLECARPRPPRMRSCDVHAIVRRVADLLATQARKKNIRLGCSLKAENS 477

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             + +     ++ LNL M A    P GG+V +     +      +  +G       +  +
Sbjct: 478 TTACDEELLMQVFLNLVMNAIQITPSGGRVEVRSSSDREALSVEVDDDGPGIPEQNRP-K 536

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +      +       +   +  R++ E  +         L 
Sbjct: 537 VFDPFFTTREGGIGLGLTVTRQIVDAHHGRIVAEASEWGGARFKVSLP 584


>gi|15598658|ref|NP_252152.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9949605|gb|AAG06850.1|AE004767_1 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 919

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 56/238 (23%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFI-----AVDKRVQVSWT 105
             +  +     Y               D    L D   +           +   +     
Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLHLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L+NL   A      G       +          ++S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|30263588|ref|NP_845965.1| sporulation kinase A [Bacillus anthracis str. Ames]
 gi|47528986|ref|YP_020335.1| sporulation kinase A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186436|ref|YP_029688.1| sporulation kinase A [Bacillus anthracis str. Sterne]
 gi|65320913|ref|ZP_00393872.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165871086|ref|ZP_02215737.1| sporulation kinase A [Bacillus anthracis str. A0488]
 gi|167641500|ref|ZP_02399749.1| sporulation kinase A [Bacillus anthracis str. A0193]
 gi|170689539|ref|ZP_02880726.1| sporulation kinase A [Bacillus anthracis str. A0465]
 gi|170709172|ref|ZP_02899597.1| sporulation kinase A [Bacillus anthracis str. A0389]
 gi|177652421|ref|ZP_02934888.1| sporulation kinase A [Bacillus anthracis str. A0174]
 gi|190564914|ref|ZP_03017835.1| sporulation kinase A [Bacillus anthracis Tsiankovskii-I]
 gi|227813528|ref|YP_002813537.1| sporulation kinase A [Bacillus anthracis str. CDC 684]
 gi|229602000|ref|YP_002867831.1| sporulation kinase A [Bacillus anthracis str. A0248]
 gi|254686206|ref|ZP_05150065.1| sporulation kinase A [Bacillus anthracis str. CNEVA-9066]
 gi|254726028|ref|ZP_05187810.1| sporulation kinase A [Bacillus anthracis str. A1055]
 gi|254738679|ref|ZP_05196382.1| sporulation kinase A [Bacillus anthracis str. Western North America
           USA6153]
 gi|254752997|ref|ZP_05205033.1| sporulation kinase A [Bacillus anthracis str. Vollum]
 gi|254759268|ref|ZP_05211294.1| sporulation kinase A [Bacillus anthracis str. Australia 94]
 gi|30258223|gb|AAP27451.1| sporulation kinase A [Bacillus anthracis str. Ames]
 gi|47504134|gb|AAT32810.1| sporulation kinase A [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180363|gb|AAT55739.1| sporulation kinase A [Bacillus anthracis str. Sterne]
 gi|164713297|gb|EDR18823.1| sporulation kinase A [Bacillus anthracis str. A0488]
 gi|167510582|gb|EDR85979.1| sporulation kinase A [Bacillus anthracis str. A0193]
 gi|170125927|gb|EDS94829.1| sporulation kinase A [Bacillus anthracis str. A0389]
 gi|170666496|gb|EDT17272.1| sporulation kinase A [Bacillus anthracis str. A0465]
 gi|172082095|gb|EDT67162.1| sporulation kinase A [Bacillus anthracis str. A0174]
 gi|190564231|gb|EDV18195.1| sporulation kinase A [Bacillus anthracis Tsiankovskii-I]
 gi|227005630|gb|ACP15373.1| sporulation kinase A [Bacillus anthracis str. CDC 684]
 gi|229266408|gb|ACQ48045.1| sporulation kinase A [Bacillus anthracis str. A0248]
          Length = 510

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +       +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|320162058|ref|YP_004175283.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995912|dbj|BAJ64683.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 380

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           +A +       ++    +   L   + H++ +P+ AI   +E L +     E    Q I 
Sbjct: 137 LALSFNQMADKLEKTETMRRQLIGDVAHELRTPLAAIKGYIEGLMDGVIPAEGNTYQQIH 196

Query: 55  LSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                    +  +            L        D +  + +I         +  ++Q+ 
Sbjct: 197 DEINRLQRLVDDLQELSRVESGAFHLKPELVSLSDLMDTIQNIFVPQFIHKGIQFQIQIE 256

Query: 104 WTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                + + ++R  ++L NL   A    P GGKVT+ +   + E + S+   G       
Sbjct: 257 PNLPPVLIDKDRILQVLTNLVGNALQYTPSGGKVTVQISKQRTEILISVSDTGIGISPEH 316

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                                  I       L   +  R+  E   +         L 
Sbjct: 317 LPFIFNRFYRTDKSRARASGGSGIGLTIAQALVKAHHGRIWAESGGEGKGSTFYFTLP 374


>gi|319957220|ref|YP_004168483.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
 gi|319419624|gb|ADV46734.1| integral membrane sensor hybrid histidine kinase [Nitratifractor
           salsuginis DSM 16511]
          Length = 1054

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 59/236 (25%), Gaps = 30/236 (12%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----- 63
           + +     L  + + H+I +P+  I    +LL    +  +  + I +   S+        
Sbjct: 374 VEANKAKDLFLANMSHEIRTPLNGIVGFTQLLKNTPLSPDQQEFISVIENSSDNLLSIVN 433

Query: 64  -----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                         +                    +  E  I     V  S     +   
Sbjct: 434 DILDLSKINADKIELEQIAFNAIEKFEDAVESYGAKAAEKNIDFGLFVDPSIPKTLVGDP 493

Query: 113 RERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            + +++++NL   A       G         +  D      F+++  G      E+  +I
Sbjct: 494 TKISQVIVNLVSNAIKFTNSNGDVEVLIEKTNETDKDATIYFAVRDTGIGI-TEEQKAKI 552

Query: 168 VDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLEK 215
                              +       L  +   +L  E           +  L K
Sbjct: 553 FGAFSQADAGTSRKYGGTGLGLAISSKLVEKMGGKLDIESEPGKGSTFFFTLTLPK 608


>gi|302533482|ref|ZP_07285824.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. C]
 gi|302442377|gb|EFL14193.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. C]
          Length = 435

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 56/214 (26%), Gaps = 15/214 (7%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 213 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 272

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                          VD    +G   Q +       +R  V  +    D   +  KI   
Sbjct: 273 ISRIDSGRLEVRRQPVDLAAAVGRHVQALTANGQAPERFLVRVSSPLPDCWADPDKIDQI 332

Query: 122 LFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           L  +   ++    G VTI V   +     ++   G                  S      
Sbjct: 333 LGNLLENAVRHGDGTVTIDVAPHEKGTAVTVTDEGPGIPEESMARVFTRFWRGSKRGGTG 392

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  Y V  +   +   +              +L 
Sbjct: 393 LGLYIVKGIVEAHGGTITVGRGPGGGAEFRFILP 426


>gi|169347138|ref|ZP_02866080.1| sensor histidine kinase [Clostridium perfringens C str. JGS1495]
 gi|169296821|gb|EDS78950.1| sensor histidine kinase [Clostridium perfringens C str. JGS1495]
          Length = 467

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 72/223 (32%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60
              ++   L   I H++ +P+  I + LE + +   E    +L+ +   +          
Sbjct: 242 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIDGIWEPTEERLLSVKEEAERLSSLVSDM 301

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
               K+   +        ++  +          +A  K +++ +  + I+L  ++    +
Sbjct: 302 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 361

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
            L+N+   A      G  + I  +   N+ I S++  G      +    F +    +   
Sbjct: 362 ALVNILSNAIRYSNEGSTIFIEERLKGNKVIISIEDQGIGISEEDLKYVFERFYRVDKSR 421

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I    V  +   +   +  E         + +L K
Sbjct: 422 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 464


>gi|85858087|ref|YP_460289.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85721178|gb|ABC76121.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 561

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 61/237 (25%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +N       ++ V +L   + HD  + I AI  ++ L    L+        +     S +
Sbjct: 183 ENELLRAQKLEAVGILAGGLAHDFNNLIAAILGNISLVKAGLNPEEKNCIRLIRAEQSCL 242

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113
            A      +            +  L    Q +  F      V   +              
Sbjct: 243 QARELTNRLITFSDGGKPRRHITSLTSFLQKMVFFTPQSASVLCRYRLPKNLYSVRIDEN 302

Query: 114 ERAKILLNLFMVAHASLP------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +  ++ L+L   A  ++P                              S++ +G     P
Sbjct: 303 QIQQVFLHLLRNAEEAMPDGGEIVIEAENFCAASDLPPGLKKGRYVRCSVRDHGKGI-AP 361

Query: 162 EKFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E  ++I +    S          +       +  ++   +          + S  L 
Sbjct: 362 EFQSRIFEPYYTSKPKGAEKGSGLSLAICYSIIRKHGGTITFSSESGQGTMFSFYLP 418


>gi|70732212|ref|YP_261968.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5]
 gi|68346511|gb|AAY94117.1| sensor histidine kinase [Pseudomonas fluorescens Pf-5]
          Length = 567

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 66/228 (28%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +            L AL  +   + H+I +P+G I  + +LL         +   ++ + 
Sbjct: 328 LQHLEAQLRRRDRLHALGEVAMGLAHEIRNPLGIIKTATQLLHRRANLPENDKRHLEYVI 387

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKI 109
                    +         +  + +      +          +    +   ++       
Sbjct: 388 SEVSRINDLITEFLDFAKPSAPIRATQLARPLVEELLGFCTPELATHNIDARIDDQAPGA 447

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            L  +  ++          A  ++P GG++T+ +    +E I S+   G     P+   +
Sbjct: 448 TLHADARQLKQACLNLILNAIDAMPDGGRLTLGISQRDDETIISVSDTGQGI-EPDMLER 506

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    V +      +    V  +   +   +      D     S  + 
Sbjct: 507 IFTPFVTTKASGTGLGLAKVFSIMESHDGHIECTSEKDAGATFSLYIP 554


>gi|78049360|ref|YP_365535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037790|emb|CAJ25535.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 678

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 282 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 341

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                           L   E   E    V +   
Sbjct: 342 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHV 401

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ + ++      + S+  +G+     
Sbjct: 402 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 461

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 462 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520


>gi|117928655|ref|YP_873206.1| periplasmic sensor signal transduction histidine kinase
           [Acidothermus cellulolyticus 11B]
 gi|117649118|gb|ABK53220.1| periplasmic sensor signal transduction histidine kinase
           [Acidothermus cellulolyticus 11B]
          Length = 524

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 55/225 (24%), Gaps = 19/225 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAI 61
             S   L   L     H++ +P+ +I    EL               + ++   ++   +
Sbjct: 265 AASEERLRRFLA-DASHELRTPLTSIRGYAELFRRGAARRPDDLEKAMRRIEEEATRMGV 323

Query: 62  IRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +  + + LA    G       +          E           RV             +
Sbjct: 324 LVDELLLLARLDQGRQPVREPVLLAELVADACEDFRAAAPDRQVRVDADPDVVVSGDELQ 383

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD-- 169
             +++ NL        P G  V I +       +  +   G      +    F +     
Sbjct: 384 LRQVVTNLLTNVRVHTPPGTPVDIRLAAENGWAVLEVTDYGLGLPAADLPRVFDRFYRAD 443

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +         +    V  +   +  R+    +          L 
Sbjct: 444 PSRTRDHGGAGLGLAIVASVVQAHGGRVGVRNVPGAGACFRVELP 488


>gi|317402202|gb|EFV82793.1| sensor protein [Achromobacter xylosoxidans C54]
          Length = 456

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 57/233 (24%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56
           A+    ++ S  L   L + + HD+ +P+ ++    + L            + ++ +R  
Sbjct: 212 AQQALVSMESEKLRNSLLAAVSHDLRTPLTSLVGMTDTLMRRQDALPADIQDTIRAMRDQ 271

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE----------QVIEDFIAVDKRVQVSWTG 106
           +      +  +            L                               +S   
Sbjct: 272 AQRMHALVANLLDMARLQSRDTPLRLEWQSIEELVGASLAAMREPLASHRISVDSLSGLP 331

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                     ++L NL   A    P G  + +       E   ++  NG           
Sbjct: 332 LVECDGVLIERVLCNLLENAAKYTPAGSAIRLHATAQDGELRVAVCDNGPGVAPGAERRI 391

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214
           F +   G  ES      +       +   +  R+  E              L 
Sbjct: 392 FEKFTRGERESATPGVGLGLAVCEAIVSAHHGRIWVEHAPGQSSGAQFVFTLP 444


>gi|229011293|ref|ZP_04168485.1| hypothetical protein bmyco0001_17440 [Bacillus mycoides DSM 2048]
 gi|228749949|gb|EEL99782.1| hypothetical protein bmyco0001_17440 [Bacillus mycoides DSM 2048]
          Length = 351

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 72/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           S                +  + +  +K +++    +K+
Sbjct: 174 TTRLSKLSQNLLKLTILESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ K     S+   G      +    
Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++ ++  E ++ +       + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 346


>gi|225386428|ref|ZP_03756192.1| hypothetical protein CLOSTASPAR_00175 [Clostridium asparagiforme
           DSM 15981]
 gi|225047467|gb|EEG57713.1| hypothetical protein CLOSTASPAR_00175 [Clostridium asparagiforme
           DSM 15981]
          Length = 468

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 58/235 (24%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M+  +              + + HD  SP+ +I   LE + +      +  + +  +   
Sbjct: 233 MSDELNKMEEYQK---NFIANVSHDFRSPLTSIKGYLEAILDGTIPPEMYGKYLSRVISE 289

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWT 105
           +       + M          +    + D    + D     E        V         
Sbjct: 290 TERLHKLTESMLTLNSLDNRGYLSRSNFDINRVIKDTAASFEGTCDNKNIVFDLTFSDNI 349

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162
                   +  ++L NL   A         + I       +   S+K  G         +
Sbjct: 350 QMVYADLGKIQQVLYNLIDNAIKFSHHNSTIYIQASSRYEKIFISVKDTGIGIPKDSLKK 409

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + +    ++    D     +    V  +   +   +     +         L +
Sbjct: 410 IWERFYKTDLSRGKDKRGTGLGLSIVKEIIQAHGENIDVVSTEGVGTEFIFSLPR 464


>gi|170737057|ref|YP_001778317.1| histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169819245|gb|ACA93827.1| histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1120

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 64/236 (27%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++     +      +  + + H+I +P+     +LELL  +G+  E    + ++  S 
Sbjct: 522 LRESRARAQAESHEKGMFLATMSHEIRTPLHGALGNLELLSRMGLTQEQRSRLLIAQDSF 581

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 ++    +   +             ++ + +   +  + 
Sbjct: 582 GSLLSLINGVLDLSRIEAGEFLLQEQPQHIDQLVEQASRTFAADAQKNGVRLLCLIDPAL 641

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            G  I       +I+ NL   A      G            +    +  +G      E  
Sbjct: 642 RGTWICDGYRFTQIVTNLIGNAVKFTSHGAITVSLGSTEIGQVRLRVADSGRGIPEDEI- 700

Query: 165 TQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I    V+ +           +       +A      +  E       + + +L 
Sbjct: 701 EKIFMPYVQGSAGPKSSRAGTGLGLSLCQKIAERMGGSITAESEVGVGSIFTVVLP 756


>gi|330890664|gb|EGH23325.1| sensory box histidine kinase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 360

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 121 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 180

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 181 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 240

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 241 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 299

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 300 PFFTTKEPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 351


>gi|255022541|ref|ZP_05294527.1| sensor histidine kinase [Listeria monocytogenes FSL J1-208]
          Length = 459

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLILASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINLDLADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165
                   ++  NL   A    P+ G + + + +        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQVHLYEETTNIFVEIQDSGVGISKADIAKIFE 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   ++  +  +   +     +  L K
Sbjct: 407 RFYKVNESRTREEGSSGLGLSICKKIITLHRGEITVQSSPEKGTTFTVKLPK 458


>gi|167755205|ref|ZP_02427332.1| hypothetical protein CLORAM_00710 [Clostridium ramosum DSM 1402]
 gi|237734954|ref|ZP_04565435.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167705255|gb|EDS19834.1| hypothetical protein CLORAM_00710 [Clostridium ramosum DSM 1402]
 gi|229381730|gb|EEO31821.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 896

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 68/235 (28%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSM 58
            + +    +  +L A L   I HD+ +P+ +I  +  +L +       +  +++      
Sbjct: 655 KREVEIKANQEELRANLLRSISHDLRTPLTSISGNAGVLLDSADKLSNERKIEIYSDIYE 714

Query: 59  SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +                      +  +           + D  +Q+  + E 
Sbjct: 715 DSMWLIDLVENLLSITRIENGNIQINKEAQLINEIVLEAMHHISKDSADHIIQLDLSDEF 774

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +  +     ++++N+   A    P G  + I+ +         +  +G      ++  
Sbjct: 775 IFVKIDARLIMQVIINIVNNAIKYTPLGSTIKITTKKLNQVLSLEISDDGEGV-PDDQKE 833

Query: 166 QIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +       +   +  ++          +    L 
Sbjct: 834 KLFEMFYTRNNLNGDSRRGLGLGLALCKSIVEAHDGKIKVIDNYPRGSIFVINLP 888


>gi|163868491|ref|YP_001609700.1| sensor histidine kinase [Bartonella tribocorum CIP 105476]
 gi|161018147|emb|CAK01705.1| sensor histidine kinase [Bartonella tribocorum CIP 105476]
          Length = 848

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 63/245 (25%), Gaps = 32/245 (13%)

Query: 2   AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            K +    + S  + A+  L   I HD  + + AI  S +LL             +  I+
Sbjct: 458 QKTLEDKIMQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRSSDPAHADLINIK 517

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGE 107
            ++  A   ++ +             +   +    I +            K +       
Sbjct: 518 NNANRAAALVQQLLAFSRKQTLRPEEVDFTEFLSDIRNLILPLLGNNIQLKIIHGRDLWN 577

Query: 108 KIDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLK 152
                    ++++NL + A  ++                +  +              ++ 
Sbjct: 578 VEVDQASFQRVVMNLVINARDAMFDGGIVTIATNNITKQQSAEFNHLGLVIGEYVQLTIS 637

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G          ++ +    +        +    V  +  ++   +  E  +       
Sbjct: 638 DTGTGISAA-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQSGGYIYCESKEGEGATFH 696

Query: 211 ALLEK 215
             L +
Sbjct: 697 IFLPR 701


>gi|29346404|ref|NP_809907.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29338300|gb|AAO76101.1| two-component system histidine kinase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 499

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 59/233 (25%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
           A+        + +  L  + + H+I +P+ AI    +++             + ++LI +
Sbjct: 262 ARKKAEESDRLKMAFL--ANMSHEIRTPLNAIVGFSDVIGSTYDELSEEERADFVRLISI 319

Query: 56  SSMSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +S   +  +             ++  F        +I +   + +        + +  + 
Sbjct: 320 NSEHLVRLIDDVLDLSKIESNTIKFTFTDCSLRSLMIDVEKEQTMKPISEIEIRALLPNE 379

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +    +++ N    A                    +     ++  G+      
Sbjct: 380 DVYINTDATRLKQVISNFINNARKFTEKGYIHFGYAVDSVDASSVHVFVEDTGSGIPKEC 439

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          ++      +       +    +  +  E            L 
Sbjct: 440 QKEIFDRFYKVDTFKQGTGLGLSICKTIVEHLQGDISVESEMGKGSRFIVTLP 492


>gi|298483182|ref|ZP_07001362.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270699|gb|EFI12280.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 579

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 69/228 (30%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     LL   DE  +    M L++ ++
Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 395

Query: 58  MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +   + ++    G +D ++       L             D  V++ +      
Sbjct: 396 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDSAVELRFDENSPQ 455

Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  +       ++L N    A     +G        + +++  F +   G      +K  
Sbjct: 456 IVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCVTDTGKGIPDEQKHE 515

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +S +    +       L      ++  E  +         
Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVKRMGGKIGVESREGEGSCFWFT 563


>gi|296392537|ref|YP_003657421.1| integral membrane sensor signal transduction histidine kinase
           [Segniliparus rotundus DSM 44985]
 gi|296179684|gb|ADG96590.1| integral membrane sensor signal transduction histidine kinase
           [Segniliparus rotundus DSM 44985]
          Length = 569

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 63/233 (27%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-- 58
           +A       S   +     +   H++ +P+ A+    EL          + + R+ S   
Sbjct: 322 LASEEKAKSSERRMR-QFVADASHELRTPLTAMRGFAELHRTGAGVSTTIAMSRIESEAI 380

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
                ++ + +               D+ Q++ D +   K +  S T             
Sbjct: 381 RMGKLVEDLLVLARTDEERPLEKEPVDMLQLMTDAVHDAKAIAPSRTIRFEFQPSGGAPV 440

Query: 114 ------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    ++L NL   A         VT+S+    ++ +  +   G      +    F
Sbjct: 441 VLGDDASLRQVLSNLVSNALLHTGEDATVTLSLGGDAHDVLVEVCDTGPGLAPEDAERVF 500

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +   +     +    V  +   +               L   L +
Sbjct: 501 ERFYRVDPSRTRSSGGSGLGLAIVNAIVRAHGGHASVRSELGVGTTLRVTLPR 553


>gi|293376810|ref|ZP_06623030.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292644562|gb|EFF62652.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 444

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 58/216 (26%), Gaps = 21/216 (9%)

Query: 21  RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67
            + H++ +PI AI    E+L     ++    DE + +I   +      +K +        
Sbjct: 226 NVSHELKTPISAIKGCTEILLNGAKNDPAALDEFLTMISDENNRMEQLVKDLLLINRYEF 285

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
              ++        + L         +        +++     +      +     LNL  
Sbjct: 286 DQIKMKTEVFCLNELLTDCIVQPLNVAKLKHQKIKLEAPEQYQIEGDYIQLKHCFLNLLT 345

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD--GNVESTIDSH 179
            A         +T+  +         +   G        P  F +               
Sbjct: 346 NAIHYSGENTTITVKAKAVGEYYQIQVIDQGIGIPSADLPHIFERFYRVDRARSRHTGGT 405

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +K R++     +     +  L K
Sbjct: 406 GLGLSIVQSIIEAHKGRIMVNSELNVGTTFTVSLPK 441


>gi|229059659|ref|ZP_04197037.1| hypothetical protein bcere0026_17680 [Bacillus cereus AH603]
 gi|228719672|gb|EEL71271.1| hypothetical protein bcere0026_17680 [Bacillus cereus AH603]
          Length = 351

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 73/233 (31%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +       + +          +    +   L        +  + +  +K +++    +K+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ K     S+   G      +    
Sbjct: 234 CVTADKESMSQVWINLIHNSIKFTPNGGTITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E ++ +       + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESVEGNGTEFIVRIP 346


>gi|167044201|gb|ABZ08882.1| putative histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
           [uncultured marine microorganism HF4000_APKG5H11]
          Length = 795

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------- 51
           +            L     L + + HD+ +P+GAI N   LL    +   V +       
Sbjct: 561 LETARQLAFRGEKLAVIGQLSAGMAHDLRNPLGAIRNVTYLLKNELVTKGVFEGNAKLNT 620

Query: 52  -------LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                   +  S+ S    + F +L        +  + L    + +     +D    +  
Sbjct: 621 CIEIIDNQVNKSNQSITDLMDFAKLKEATLVETNLDVVLAQALETLSQRDDIDLLKNIEP 680

Query: 105 TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             + +    E+ + + +NL   A  ++P GG +TI+ ++       +    G+     E 
Sbjct: 681 NIQPVMADGEQLQRVFVNLANNAQEAMPDGGSLTIAAKNVNGTVQITFSDTGDGI-SQEN 739

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE--IIDDHNVVLSALLE 214
             +I D    + +    +     + +   +   +                 + 
Sbjct: 740 LEKIFDPLFTTKVKGTGMGLAVCLEIVEGHAGTISVHRNAEPPGGTTFDVRIP 792


>gi|297584464|ref|YP_003700244.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297142921|gb|ADH99678.1| multi-sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 603

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           M       L    L     + + H++ +PI  +    E +       +   ++    +  
Sbjct: 357 MRDMTEERLHD-KLRKDFIANVSHELRTPISMLQGYSEAIIDDVAGSDEEKKELAQIIYD 415

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104
            S     +  + + LA    G +   +   ++ + +E      + V              
Sbjct: 416 ESLRMGRLVNELLDLARIEAGHIRLNLEPVNMTEFVERISRKFQGVADDNNVELMGEIDQ 475

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E         +++ NL   A       G V + +++        ++  G      + 
Sbjct: 476 SDTEAYVDPDRIEQVMTNLIDNAIRYTSVNGSVKLRLEELPAGFRLDVEDTGAGIPEEDL 535

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +K R+            S  L 
Sbjct: 536 PFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHKGRVSAHSRMGEGTTFSVFLP 591


>gi|83312725|ref|YP_422989.1| sensor protein fixL [Magnetospirillum magneticum AMB-1]
 gi|82947566|dbj|BAE52430.1| Sensor protein fixL [Magnetospirillum magneticum AMB-1]
          Length = 548

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 26/233 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
            +  + + ++  A + S   HD+  P+  I + L LL+        G   E +   R  +
Sbjct: 315 ELERSNAELEQFAYVAS---HDLREPLRMISSYLSLLERRYAPKLEGDGLEFLAFARDGA 371

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------TGE 107
                 +  +            ++ +     + +    +   ++ S              
Sbjct: 372 QRMDRLVLDLLDFSRIQRKGSPIVAMDADPLLHQALRHLAPAIEESGGAVEVAEGGEAVR 431

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFT 165
            +    +  ++  NL   A             +S Q +  E    +  NG     P+ F 
Sbjct: 432 VMGDPDQVIRLFQNLIGNAVKYRAPDRAPLVKVSWQRTGGEWECVVADNGIGI-DPQYFE 490

Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I                 I       +   +  R+  E + D   V    L 
Sbjct: 491 RIFGIFQRLHTPDAYAGTGIGLAICKKIVERHGGRIWVESVPDQGSVFHFTLP 543


>gi|114565065|ref|YP_752579.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
 gi|114336358|gb|ABI73740.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
          Length = 714

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 75/231 (32%), Gaps = 22/231 (9%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQ 51
                +++  L AL  L + I H+I +P   I  ++ELL           E  IE  + Q
Sbjct: 462 TRQQLVTNEKLTALGELIAGIAHEINNPTAVILGNMELLKYELGDNAAIVEEEIELVIQQ 521

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---- 107
           + R++++   +        F    ++  +  + +   ++       + V++         
Sbjct: 522 VGRITTIIRSLLQYSRPGEFNAPITLQPVTPIVEEMLLLARHSIEQQEVKLIKEFTATGS 581

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNLARFPE 162
                 +  ++L+NL + A  ++   G++ +   D             ++  G      +
Sbjct: 582 VEVNRPQLLQVLINLMVNAAHAIENKGRIWLRTYDWLEDGIAIGVKIEVEDEGMGISKQD 641

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +I D    +  D   +       +       +          + +  L
Sbjct: 642 LS-RIFDPFYTTRKDGTGLGLSLSYGIIKRLGGTIEVNSTVGKGTIFTIGL 691


>gi|319654425|ref|ZP_08008512.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
 gi|317393924|gb|EFV74675.1| hypothetical protein HMPREF1013_05132 [Bacillus sp. 2_A_57_CT2]
          Length = 465

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 67/234 (28%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
             +  +L  + L     L S I H++ +P+  I    +++ +        D+ + +I   
Sbjct: 222 SRLASDLHYLKLERNDFLAS-ISHELRTPLTYIKGYADIVHKRNLSIEDRDKYLNIIHEE 280

Query: 57  SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +      +K +                     D ++ +            ++  V     
Sbjct: 281 ANRLSDLIKDLFDLAKMDKNSFVIQKRPIDLTDFILKIEQKFSPAFQEKEMELDVICPKE 340

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       +I+ NL   A    P G K  +SV + K +    ++ NG      +   
Sbjct: 341 AVIIADPTRLEQIIFNLLDNAIKYSPPGAKTILSVNNKKKDVYIKVRDNGKGIPEEDLPY 400

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            ++    +    V  L   +   +     +        + +
Sbjct: 401 ILNRFYRVDKSRTRSLGGTGLGLAIVKELVLAHGGTVSVRSKEGKGTEFELVFK 454


>gi|309792751|ref|ZP_07687196.1| GAF sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308225203|gb|EFO78986.1| GAF sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 471

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           +       L S  L A+  L + + H+I +P+ A  NSL L    L     +   + + +
Sbjct: 234 LNTAQAQLLQSAKLAAVGELSASVAHEINNPLYAARNSLYLVEQDLAADDPQRAFLTIAQ 293

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                    +  MR  +          + +V     L  ++  +            S   
Sbjct: 294 QELGRIARIITRMRDFYRPTRAELASTSINVLLRETLELVQTHLRHSHINAVTELGSDIP 353

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARF 160
             I  + +  ++ LN+ + A  ++P         ++  +  ++       +   G     
Sbjct: 354 AIIAHADQLRQVFLNIILNACDAMPDGGDLRVRTRMLQARHEAPTTIEIDICDTGAGI-P 412

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    + +    +      +       +  ++  R+L E         S LL 
Sbjct: 413 PEHLPHLFEPFYTTKTHGTGLGLAISAHIISQHNGRILVESEVCQGSTFSILLP 466


>gi|258620421|ref|ZP_05715459.1| Osmolarity sensor protein envZ [Vibrio mimicus VM573]
 gi|258587300|gb|EEW12011.1| Osmolarity sensor protein envZ [Vibrio mimicus VM573]
          Length = 438

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 64/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +                  + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIARDVASSEGGYEVQIETDLQVGLTPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K      ++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGITADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432


>gi|115379186|ref|ZP_01466305.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
 gi|115363806|gb|EAU62922.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
            DW4/3-1]
          Length = 1021

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 80/236 (33%), Gaps = 26/236 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
            MA++   N +  + +A++     H++ +P+ A+    ++L     +  I+++ + +I  +
Sbjct: 773  MAESQAANRAKDEFLAVM----SHELRTPLTAVLGWTQMLRTRRNDPAIQEKGLDVIERN 828

Query: 57   SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----W 104
            + S    ++ +             +  +VD    +    +V+           V      
Sbjct: 829  ARSLAQLIEDVLDVSRILTGKLALHQRAVDLASVVQAAVEVVRPRAEQKGVTLVMEAGVG 888

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
             G          ++  NL + A    P GG+V + V+    E    +K +G   R    P
Sbjct: 889  GGMVTGDPGRLQQVFWNLLVNAVKFTPSGGRVEVRVERGNAEWRVWIKDSGQGIRVEALP 948

Query: 162  EKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              F +     G+         +    V  L   +   +  E     H    +  L 
Sbjct: 949  HLFERFWQADGSSTREHGGLGLGLAIVRHLVELHGGEVEAESAGLGHGSTFTVRLP 1004


>gi|22298825|ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 gi|22295006|dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1353

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 60/239 (25%), Gaps = 34/239 (14%)

Query: 8    NLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
             L    L A L         + + H+I +P+ A+     LL +  + ++    ++    +
Sbjct: 809  ELEQARLQAELANRAKSEFLATMSHEIRTPMNAVLGFTNLLLDTPLNEQQRDFLQTLHQA 868

Query: 60   AIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVD-----KRVQVS 103
                L  +     ++              D    + D+  ++                  
Sbjct: 869  GEALLTIINDILDFSKIESGKLVLEQQPFDVRECVEDVLSLLASKAQEKELELLYTCTPE 928

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLARF 160
               +         +IL+NL          G          ++ K+   F ++  G     
Sbjct: 929  TPAQIKGDVTRLRQILVNLVGNGIKFTHEGQVAVHVGVLKREGKDFLQFQVQDTGIGI-P 987

Query: 161  PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++  ++                   +       L       +  E  +      +  +
Sbjct: 988  RDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVESTEGQGTTFTFTI 1046


>gi|119386645|ref|YP_917700.1| PAS/PAC sensor signal transduction histidine kinase [Paracoccus
           denitrificans PD1222]
 gi|119377240|gb|ABL72004.1| PAS/PAC sensor signal transduction histidine kinase [Paracoccus
           denitrificans PD1222]
          Length = 350

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 57/234 (24%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + + H++ +P+ A+   +E L      +       + ++   +      +
Sbjct: 111 ETEQMRRDFVANVSHELRTPLTALMGFIETLRGPARNDPAARARFLDIMEREAGRMNRLV 170

Query: 65  KFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRER 115
             +                              +     A   R+++     K+ +  + 
Sbjct: 171 ADLLSLSRVEQDERRRPAQNLDLAGLLRSVVATLTPAAAAAGVRLELQGAAGKVPVPGDA 230

Query: 116 AKILLNLFMVAHASLPRGGKVT----------ISVQDSKNENIFSLKINGNLARFPEKF- 164
            +++     +   +L  GG                         S+   G          
Sbjct: 231 DQLVQVFHNLVENALKYGGGGGVATVTLERLAHEPVLRGPAWAVSVADQGEGIDQQHLPR 290

Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +         +    V  + + ++ RL  E         + +L 
Sbjct: 291 LTERFYRVDTHRSREQGGTGLGLAIVKHIVNRHRGRLRIESERGKGSRFTVILP 344


>gi|327537685|gb|EGF24396.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 935

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 32/243 (13%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            +    +L +    A   S         + H+I +P+ AI    ELL E  +  E    +
Sbjct: 534 QRKFEMDLKAARDAAQFASQSKSKFLANMSHEIRTPMTAILGYAELLGEHDLPAEACDFL 593

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           +    +                     + +       +  +  +  I  V      +  R
Sbjct: 594 KTIRRNGDYLLDIIDEILDLSKIEADKLEMNHELFDLMRVVEDVRSIMDVRASEKDLQIR 653

Query: 100 VQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           V              +   +IL+NL   A     + G V ++V+       F +  +G  
Sbjct: 654 VCYDGKLPRRIQSDPKRLKQILINLVGNAIKFTRQ-GHVDLAVRYVDGHLQFDITDSGIG 712

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               ++  ++          V        +       LA      +  +         +A
Sbjct: 713 M-SDDQKAKLFQPFSQGDSSVSRDFGGTGLGLAISRRLAKMLGGEIYVQSQLRQGSTFTA 771

Query: 212 LLE 214
            ++
Sbjct: 772 TIQ 774


>gi|241888981|ref|ZP_04776285.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379]
 gi|241864230|gb|EER68608.1| sensor protein kinase WalK [Gemella haemolysans ATCC 10379]
          Length = 642

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 19/227 (8%), Positives = 60/227 (26%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRL 64
                     S + H++ +P+  +++ +E     +L++  +  + +  I   +   I  +
Sbjct: 407 RQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVLEDKELAPQFIDTIHKETTRMIRMV 466

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------- 116
             +          +           + + I     +          + +           
Sbjct: 467 NELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKNFIKHIPKSPIFVEGDQDK 526

Query: 117 --KILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
             ++  N+   A    P      V +      N    S+K  G                 
Sbjct: 527 LTQVFDNIVNNAIKYSPNGKNITVRVRQNYHHNRVSISIKDEGVGIPLVHIDKIFNRFYR 586

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                + ++    +       +   +K R+  +  + +  ++   L 
Sbjct: 587 VDKSRQRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLP 633


>gi|168702165|ref|ZP_02734442.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 881

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 73/243 (30%), Gaps = 31/243 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
            K +      +  + A+  L   + HD  + +  I+   +LL       ++      V  
Sbjct: 497 RKRLEAQFRQAQKMEAVGRLAGGVAHDFNNLLTVINGYTDLLLGGPLAENDRAALAAVRD 556

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R A      +D    +   E+++   I  D  + V+       +
Sbjct: 557 AGERAAGLTSQLLAFSRKAIVAPQVLDLKEVVAQAERLLRRLIGEDVALTVTSHAGPCWI 616

Query: 112 SRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKN---------------ENIFSLKI 153
             +  +   +++NL + A  ++P GG++T   +                       +++ 
Sbjct: 617 EADLNQLDQVIMNLAVNARDAMPTGGRLTFETRRIPVAPGSSTDSGELRAGWYVSLAVRD 676

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      E   ++ +    +        +    V  +  +    +  E           
Sbjct: 677 TGCGM-SNEVKARLFEPFFTTKGPGKGTGLGLAVVHGIVKQAGGHIWAESAPGAGTTFHI 735

Query: 212 LLE 214
           L  
Sbjct: 736 LFP 738


>gi|168700887|ref|ZP_02733164.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 441

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 60/232 (25%), Gaps = 23/232 (9%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RL 55
             +++     AL  L + + HD  + +        LL          +            
Sbjct: 188 ERSVAHEKAAALEQLAAGVAHDFRNLLTVFLGYGGLLARRDDLPHDARKQAKDIVTAAEQ 247

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            +  A   L+F          +D      +   V++  I    ++Q +   E   +  E+
Sbjct: 248 GTALAKGLLEFAHPQTAPPAVLDLGAVAAEFMPVLKAAIGSKYKIQYTQPDELGQVFIEK 307

Query: 116 AKILLNLFMVAHASLPRGG------------KVTISVQDSKNENIFSLKINGNLARFPEK 163
            +    L  +A  +                 K+T +        +  +   G+     E 
Sbjct: 308 GQFTRLLLNLAVNASEAMPAGGLVAIRLAPVKLTGNPSYLGRFVLLEVTDTGSGI-DAET 366

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++ D    +      +    V  +       +  E  +           +
Sbjct: 367 QRRMFDPYFTTKSKGTGLGLAIVRRIVDRVGGLIRVESSESKGTTFRVFFPR 418


>gi|219849612|ref|YP_002464045.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219543871|gb|ACL25609.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 596

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 53/223 (23%), Gaps = 25/223 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF--- 66
           +   + + H++ +P+ AI    E++ +             +  + L+    +  +     
Sbjct: 362 STFLAMMSHELRTPLTAILGYSEVIRDDLQIRGQNDLIADLDRVVLAGRHLLNLINDILE 421

Query: 67  --------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAK 117
                   +++        + +  +      +         V V               +
Sbjct: 422 LARLEANSLQVYPEPLHLAEIVTEVVSTSHGLAQRNQNTLTVTVEPNLPPVKADPTRLRQ 481

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +LLNL   A     +G                 +   G     PE+   +    +     
Sbjct: 482 VLLNLIGNACKFTEQGQIHVRCYSPQPGIIQIDVSDTGIGI-PPEQLASLFQPFMQVDNG 540

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       L       ++ E         S  L 
Sbjct: 541 TTRRYGGAGLGLAISRRLCQAMGGEIVVESEPQRGSTFSVRLP 583


>gi|315127977|ref|YP_004069980.1| osmolarity sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315016491|gb|ADT69829.1| osmolarity sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 437

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           LL + + HD+ +P+  I  + E++ +   +     +I        I  +F+     +   
Sbjct: 227 LLMAGVSHDLRTPLTRIRLATEMMVDED-DYLREGIIYDIEDMNGIIDQFIEYLRHHKRE 285

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPR 132
             S   +  +   +       +RV    +   +           +++ N+   A      
Sbjct: 286 EQSYEDINALVAEVVQSELKHQRVITFESNPNLGNIPISSVAIKRVVTNMIENALRYSQG 345

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILL 189
             +V      +K   I ++  NG      E    F     G+     +   +    +  +
Sbjct: 346 DIEVQSYFNSNKKYVIIAVNDNGPGIPESELESVFEPFKQGDAARGSEGSGLGLAIIKRI 405

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +  +++     +  +     L 
Sbjct: 406 IDMHNGKVVLSNRPEGGLSAQIYLP 430


>gi|309792039|ref|ZP_07686515.1| ATPase domain-containing protein [Oscillochloris trichoides DG6]
 gi|308225932|gb|EFO79684.1| ATPase domain-containing protein [Oscillochloris trichoides DG6]
          Length = 801

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 27/234 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
                +          + I H++ +P+  I    +LL     E     +  +L+    + 
Sbjct: 551 TEAVLMDQAK--TDFIATISHELRTPLTVIRGYTDLLLRGRGEEAPTTDQAELLEQVRLR 608

Query: 60  AIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           A+     +  A                     L+    +  + + F + +  + +    +
Sbjct: 609 AVDMTNIVNNAIMIADLESGQLETDLQPQDVELVLSMALSPLRQGFESKNLSINLELAPD 668

Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +R ++          A     +GG    +   + +E        G      E  
Sbjct: 669 LPPVLADREQLRRAFGQILDNALRYTHQGGVTIQATVRNAHEIEVHFSDTGTGI-PAEML 727

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            ++           S      +       L       +            +  L
Sbjct: 728 PRLFMRFQRVEGNNSAQRGSGLGLAITRQLIERQGGHVTVISTPGEGSTFTITL 781


>gi|300172611|ref|YP_003771776.1| two-component sensor kinase [Leuconostoc gasicomitatum LMG 18811]
 gi|299886989|emb|CBL90957.1| Two-component sensor kinase yycG [Leuconostoc gasicomitatum LMG
           18811]
          Length = 623

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 66/241 (27%), Gaps = 33/241 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
                + S     +  S + H++ +P+ ++ + ++ L     D+  +    + +++  + 
Sbjct: 369 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAIDDPEMAQNFLGVVQDETQ 426

Query: 59  SAIIRLKFM---------------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
             I  +  +                      L        D +I          +     
Sbjct: 427 RMIRMINDLLALSRLDQGTMDVRLEVVNLNSLFNFVLNRFDMIIESDAKNTDTPNKNYNI 486

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +R   +          +  ++L N+   A    P GG +T  +  +K   I S+   G  
Sbjct: 487 QREFTNEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 546

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +  +                    +       +      R+  + +++        
Sbjct: 547 IPRKDLDSIFNRFFRVDKSRSRAQGGTGLGLAISKEVVERFNGRIWVDSVENRGSTFYIS 606

Query: 213 L 213
           L
Sbjct: 607 L 607


>gi|293368955|ref|ZP_06615556.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635975|gb|EFF54466.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 534

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 57/229 (24%), Gaps = 22/229 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    NL  +    L  + + H+I +P+ AI     LL E   + E    +        
Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLVESDDKKERQDYVD-IMQENT 358

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106
             L  +         +++      ++ +       D                        
Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDYLDIKSFCEDIIRNYDIKEDKPVPVLLAPTLPNF 418

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFT 165
                 +   +++ N    A     +G  +          E  FS+   G     P+K  
Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNKGQILLEYHLKEDTSEIEFSVADTGMGI-EPDKVD 477

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           ++ D  V   S      +       +       +  E            
Sbjct: 478 RVFDRFVKLNSFSKGTGLGLSICRSIIEHLGGTIGVESEMGTGSRFWFT 526


>gi|237734956|ref|ZP_04565437.1| two-component system sensor protein kdpD [Mollicutes bacterium D7]
 gi|229381732|gb|EEO31823.1| two-component system sensor protein kdpD [Coprobacillus sp. D7]
          Length = 486

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 60/234 (25%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +     +    L + L   I HD+ +P+ +I      L    +    D  + +I+  S 
Sbjct: 246 KEEARLQVEREKLKSTLLRSISHDLRTPLTSIAGGANFLVNNLDTVESDTSLNIIQDISK 305

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------------IEDFIAVDKRVQVSWT 105
            A+     +      T   +    +    +V                        +    
Sbjct: 306 EAMRLNGMVENLLNMTRIQEGNFKINKKLEVVDDIISTAVSAITNRKENHELVVKETKDI 365

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L+NL   A    P   KV +      N  IF +  NG      +   
Sbjct: 366 ILFPCDAQLIVQVLVNLLDNAFKHTPDASKVMLKAFVRNNNIIFQVIDNGKGIEIKQLNH 425

Query: 166 QIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              D    S           +       +   +K  +     D         L 
Sbjct: 426 IFDDFFTTSLDNGDHKRGIGLGLAICKAIVEAHKGEIKAFNNDLGGATFELSLP 479


>gi|227873738|ref|ZP_03991968.1| possible sensor histidine kinase [Oribacterium sinus F0268]
 gi|227840418|gb|EEJ50818.1| possible sensor histidine kinase [Oribacterium sinus F0268]
          Length = 348

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +N    L        L + I HD+ +PI +I    E + +        + + +Q I  
Sbjct: 102 LKQNQEEKLKDEQENRELVTNIAHDLKTPITSIKGYAEGILDGVASTEEKKRKYIQTIYH 161

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113
            ++     +  +        +                  +V+  + +   G + +     
Sbjct: 162 KAVEMNRLIDELNYYAKIETNRIPYHFCQLPALEYFQDFSVEVAMDLDAMGYRFETDFLL 221

Query: 114 -----------ERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
                      +  K+L N+   A   + +       V  D+ +     +  NG      
Sbjct: 222 EESVEVIADPEQLRKVLNNIISNAIKYMDKKDPKIRFVLSDAGDFVEVEISDNGKGIEKK 281

Query: 162 EKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                +      I    V  +  ++  R+  E        +  +L K
Sbjct: 282 DLPNIFERFFRTDAARNTETGGSGIGLSIVKKIIEDSGGRIWAESELGEGTSIHFVLRK 340


>gi|311740195|ref|ZP_07714027.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304750|gb|EFQ80821.1| sensor histidine kinase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 503

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 62/230 (26%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSS 57
           + +++       + +        H++ +P+ ++    EL      +D  +   ++   S 
Sbjct: 265 LQRSVVRAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATKDVDLVFSKIDDESK 324

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
             +++    + L       +D          +     A                S     
Sbjct: 325 RMSLLVEDLLALTRAEGTRLDLHPVDLLELALSVGSSARAAFPGREIKVANDAKSIPVVN 384

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
                  ++LLNL             VT+ ++   N+ +  +  +G      +    F +
Sbjct: 385 GDASRLHQVLLNLVTNGIRHGGEDATVTLRLRREANDVLIDVSDDGKGMSQEDAAHIFER 444

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +           +    V  L  ++   +  +         +  L 
Sbjct: 445 FYRADTSRTRDTGGSGLGLAIVHSLVEQHDGSISVDSELGRGTTFTVRLP 494


>gi|220908950|ref|YP_002484261.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865561|gb|ACL45900.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1432

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 78/238 (32%), Gaps = 27/238 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
            ++       ++ +  L S + HD+ + +  I  S +LL +    G   E++++I  ++  
Sbjct: 1058 ESQFLRAQRLESIGTLASGMAHDLNNMLTPILASSQLLQKQFPEGRSQEILKIIEANARR 1117

Query: 60   AIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                ++ +             +     L +I+Q+ E        + +        +  + 
Sbjct: 1118 GADLIRQVLTFARGTEGKRIPLQVKHLLTEIQQICERTFPKSITIVLDVVSTLSTILADP 1177

Query: 116  ---AKILLNLFMVAHASLPRGGKVTISVQDS--------------KNENIFSLKINGNLA 158
                ++L+NL + A  ++  GG++ + ++D                   + ++   G   
Sbjct: 1178 TQLHQVLMNLCVNARDAMSVGGQLQLRLEDFFIDENYARLLALQSGAYIVITVADTGTGI 1237

Query: 159  RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE   +I D    +        +       +   +   +  E    H       L 
Sbjct: 1238 -APEVLERIFDPFFTTKAVGQGTGLGLSVAEGIIRSHGGIITVESEVGHGSQFKLYLP 1294


>gi|329768145|ref|ZP_08259650.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341]
 gi|328838056|gb|EGF87675.1| hypothetical protein HMPREF0428_01347 [Gemella haemolysans M341]
          Length = 641

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 18/227 (7%), Positives = 59/227 (25%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRL 64
                     S + H++ +P+  +++ +E     +L++  +  + +  I   +   I  +
Sbjct: 406 RQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVLEDKELAPQFIDTIHKETTRMIRMV 465

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------LSRE 114
             +          +           + + I     +                       +
Sbjct: 466 NELMQLGKMDIKEEHYEKEFIDINKMLEQITDRFALTHPEKNFIKHISKTPIFVEGDQDK 525

Query: 115 RAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
             ++  N+   A    P      + +      N    S+K  G                 
Sbjct: 526 LTQVFDNIVNNAIKYSPNGKNITIRVRQNYHHNRVSISIKDEGVGIPLVHIDKIFNRFYR 585

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                + ++    +       +   +K R+  +  + +  ++   L 
Sbjct: 586 VDKSRQRSMGGTGLGLALAKTIVEAHKGRIWAQSREGYGSIIFVTLP 632


>gi|300866811|ref|ZP_07111490.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300335193|emb|CBN56650.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1043

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 65/242 (26%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + +     L +  L     + + H++ +P+ A+    +LL     +       ++ I  +
Sbjct: 645 LHQRAEELLQANRLKDEFLATLSHELRTPLNAMLGWTQLLRSRKFDEEKTARALETIDRN 704

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           + S    ++ +                 VD +  +    + +           +    E+
Sbjct: 705 TKSLAALIEDLLDVSRIITGKLRLNLRLVDLVSVVEAAIETVIPAAQAKSIQIIPLLDER 764

Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDSK------NENIFSLKINGNLA 158
           I+          +++ NL   A    P GG VTI++                +   G   
Sbjct: 765 IERISGDSSRLQQVIWNLLSNAIKFTPNGGCVTIAIHRVGSELEGNFCAEIEVTDTGQGI 824

Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSAL 212
                       +        +     +    V  L   +   +  +          +  
Sbjct: 825 NPEFLPHVFDRFSQADSTTTRSYSGLGLGLAIVRHLVELHGGTVKADSQGSGKGSAFTVR 884

Query: 213 LE 214
           L 
Sbjct: 885 LP 886


>gi|295319850|gb|ADG00228.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. 230613]
          Length = 522

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   D+    ++ +Q+I   +      +  + 
Sbjct: 297 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 356

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + R+ +        I    +  +
Sbjct: 357 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEKVPLLIGNKDKYNQ 416

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G V+I  +  K   +F ++  G      E   +I +        
Sbjct: 417 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 475

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 476 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 518


>gi|258623924|ref|ZP_05718877.1| sensor protein TorS [Vibrio mimicus VM603]
 gi|258583718|gb|EEW08514.1| sensor protein TorS [Vibrio mimicus VM603]
          Length = 968

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL E  +       +++ + S  
Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +     Y+      + +      +   +     +                    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                      ++L NL         +    + IS         F+++ +G      +  
Sbjct: 577 RYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPDGQGIRFAVEDSGIGIAEQDQV 636

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F                +       L       L            S  L 
Sbjct: 637 SLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSSQLGQGSCFSFTLP 689


>gi|153941140|ref|YP_001391824.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
 gi|152937036|gb|ABS42534.1| putative phosphate regulon sensor protein [Clostridium botulinum F
           str. Langeland]
          Length = 569

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   D+    ++ +Q+I   +      +  + 
Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + R+ +        I    +  +
Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEKVPLLIGNKDKYNQ 463

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G V+I  +  K   +F ++  G      E   +I +        
Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|149174179|ref|ZP_01852807.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148847159|gb|EDL61494.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 739

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 57/226 (25%), Gaps = 28/226 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           +   + + H+I +P+ AI    ++L     + E ++++R    +                
Sbjct: 345 SEFLANMSHEIRTPMTAILGFTDILINDLNQTEEIEVVRTIHQNGEYLLGLINDILDLSK 404

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--KIDLSRERAKIL 119
                + + +      + +  +  + QV      +   V                  +IL
Sbjct: 405 IEDGKLDVEWLDCSPHEIVNDVISLLQVRAVAKGIPLEVNFEGPVPELIHTDPARLRQIL 464

Query: 120 LNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
           +NL   A      G          + Q  + +  F +   G      E+   +       
Sbjct: 465 INLIGNAIKFTEHGSVQLVIRLVSNQQSDQQKLHFDVFDTGIGI-AAEQIENLFLPFTQA 523

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       L       +            S ++ 
Sbjct: 524 DSSTTRQYGGTGLGLAICKRLVELLGGTIQVSSTVGKGSTFSVIIP 569


>gi|78043258|ref|YP_358963.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995373|gb|ABB14272.1| sensor histidine kinase [Carboxydothermus hydrogenoformans Z-2901]
          Length = 485

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 79/237 (33%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++        +    L + I HD+ +PI AI   +E + +      E +     +   
Sbjct: 244 LKESEELKKQYEENRKELIANISHDLKTPITAIKGYVEGIRDGVADSPEKLSRYVDTIYR 303

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------------VIEDFIAVDKRVQVSWTG 106
            I+ +  +         +D      + E+             +  D       +++    
Sbjct: 304 KILEVDGLIDELFLFSKLDLKKLPFNFEKVNLNRYLSDVAEELEFDLRKKGIELKLHLPC 363

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLAR--- 159
           +++ +  +R    +++ N+   +   + +   +V I+V+D +   I  +  NG       
Sbjct: 364 QQVFVWADREKLKRVINNIVDNSVKFMDKENSQVVINVKDEEKRVIIEIADNGRGIPLDA 423

Query: 160 FPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P+ F +    +          +       +  E+   +    + +    +S  L+K
Sbjct: 424 IPKIFERFYRVDSARTGTSGSGLGLSIAAKIIEEHGGEIWANSVLNEGTTISFTLKK 480


>gi|15894978|ref|NP_348327.1| sensor histidine kinase [Clostridium acetobutylicum ATCC 824]
 gi|15024665|gb|AAK79667.1|AE007679_13 Sensory histidine kinase (with HAMP and PAS domains) [Clostridium
           acetobutylicum ATCC 824]
 gi|325509115|gb|ADZ20751.1| Sensory histidine kinase (with HAMP and PAS domains) [Clostridium
           acetobutylicum EA 2018]
          Length = 566

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 20/222 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   ++   + E + +I          +  + 
Sbjct: 344 ENMRTQFVANVSHELKTPLTSIKGFAETLRYVEDDNQKGEFLDIIDDEVDRLTRLISDIL 403

Query: 68  ---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                     +        + +  +  + +       +  +V        I  + +  ++
Sbjct: 404 TLSDIEIRPFMKKEEFDVNEIIKAVCGLLEKSASRKNISLKVFGEDVPNLIGDNDKFKQM 463

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           ++NL   A      GG+V++  + +K++ I S+K NG      E   +I +         
Sbjct: 464 IINLVDNAIKYTEAGGEVSVYKKYTKDDVIISVKDNGVGI-PKEHLQRIFERFYRVDKAR 522

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +  E            + 
Sbjct: 523 SRANGGTGLGLAIVKHIVLNFNGSINIESKLGVGTEFIITIP 564


>gi|94972033|ref|YP_594073.1| periplasmic sensor signal transduction histidine kinase
           [Deinococcus geothermalis DSM 11300]
 gi|94554084|gb|ABF43999.1| periplasmic sensor signal transduction histidine kinase (and HAMP
           domain) [Deinococcus geothermalis DSM 11300]
          Length = 367

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 60/215 (27%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFMR-LAFGYTG 75
           L + + H++ +PI A+    E L +  ++     + ++    +     + +  ++    G
Sbjct: 145 LIANVAHELRTPIAALRGYTEALADGVMDPVAAREALQREVSALERLARDLSLVSQVERG 204

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLFM 124
            ++  +       +++      +                            A++L NL  
Sbjct: 205 RLELHLSTFSPADLLQAARERFEGAYDEKGVELGVQLPPGLPPVRADFGRAAQVLANLLT 264

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTIDSH 179
            A    P GG+VT+          F +   G+       P  F +               
Sbjct: 265 NALRHTPPGGQVTVGAVADGPFVQFLVTDTGSGIAAEHLPRVFERFYRADPARSRADGGS 324

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L       +  E +       +  L 
Sbjct: 325 GVGLTIARGLVERMGGHIRAESVPGQGSRFAFTLP 359


>gi|332701877|ref|ZP_08421965.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
 gi|332552026|gb|EGJ49070.1| histidine kinase [Desulfovibrio africanus str. Walvis Bay]
          Length = 550

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 70/232 (30%), Gaps = 27/232 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE------------DEVM 50
           + S  + AL  + + + H++ +P+  I  S     +LL E   E            D++ 
Sbjct: 318 MQSNKMAALGKMAAGVAHEVNNPLTLIRESAGWIKDLLTEEDPEAIKNYEEIAEAVDKID 377

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKI 109
           Q +  +       L F R       +VD        +  +  + +  +  ++     +  
Sbjct: 378 QNVERAKGVTHRMLGFARRMEPMQENVDLNQVAKQTMAFLQNEALHRNIELRAELAPDLP 437

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFPEKF 164
             + + A++   L  +   ++               ++S      S+   G      E  
Sbjct: 438 HTATDTAQLQQVLLNLLENAIDAVDHDGTVTIRTRTEESGKRIQLSVIDTGKGI-PKEMQ 496

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D  V +    +   +       +       +  E  +      +  L 
Sbjct: 497 GRIFDPFVTTKGVGEGTGLGLSISYGIMERLGGGIAVESEEGEGATFTLTLP 548


>gi|299149292|ref|ZP_07042352.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298512726|gb|EFI36615.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 992

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 61/230 (26%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     +L     E+E  + + +   + 
Sbjct: 617 LTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTDEEEEKQEYVSIIENNN 676

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105
            + L+               +   +        L  L    Q+      V     +    
Sbjct: 677 TLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKN 736

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++L+NL   A       G +    +    E  F +   G      ++ +
Sbjct: 737 CFIHTEKNRLSQLLINLISNAIKFTTE-GYIRFGYELRGKEIYFYVSDTGCGIPKDKQKS 795

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   ++ +    +       L       +  +  +         L 
Sbjct: 796 IFGRFVKLNSFEQGTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 845


>gi|296111787|ref|YP_003622169.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295833319|gb|ADG41200.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 451

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 59/227 (25%), Gaps = 21/227 (9%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIR 63
           L +  + +   +   H++ +P+ AI   +E L            + + ++   +      
Sbjct: 224 LQAERMQSDFLANASHELKTPLTAITGFVETLQGPAGESLETRQQFLGIVAEEAQRLTSL 283

Query: 64  ----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                      +            D +       Q +     V  +  V           
Sbjct: 284 VSDILSLSRVQQKSEAVSLEMAVHDMVNDQWQHVQTLASVKHVALKNDVPSDFFVRGFKN 343

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
           + A IL NL + A       G + I+          ++K  G      +    F +   G
Sbjct: 344 DMATILQNLIVNAVKYNKPNGHILITAYKDHQHWQINVKDTGIGIPKNQQSRIFERFYRG 403

Query: 171 NVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +    V  +  ++   L           +S  L 
Sbjct: 404 DESRQRTIASGTGLGLSIVNEIVRKHNGDLKVNSQVGVGTTISVTLP 450


>gi|293368956|ref|ZP_06615557.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292635976|gb|EFF54467.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 1014

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 61/230 (26%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     +L     E+E  + + +   + 
Sbjct: 639 LTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTDEEEEKQEYVSIIENNN 698

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105
            + L+               +   +        L  L    Q+      V     +    
Sbjct: 699 TLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKN 758

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++L+NL   A       G +    +    E  F +   G      ++ +
Sbjct: 759 CFIHTEKNRLSQLLINLISNAIKFTTE-GYIRFGYELRGKEIYFYVSDTGCGIPKDKQKS 817

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   ++ +    +       L       +  +  +         L 
Sbjct: 818 IFGRFVKLNSFEQGTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 867


>gi|160885842|ref|ZP_02066845.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
 gi|156108655|gb|EDO10400.1| hypothetical protein BACOVA_03846 [Bacteroides ovatus ATCC 8483]
          Length = 992

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 61/230 (26%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     +L     E+E  + + +   + 
Sbjct: 617 LTTARDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTDEEEEKQEYVSIIENNN 676

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105
            + L+               +   +        L  L    Q+      V     +    
Sbjct: 677 TLLLQLISDILDLSKIEAGTLEFQYSNIDLNKMLNELTSSLQLKIKSEKVQLTCHLAEKN 736

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++L+NL   A       G +    +    E  F +   G      ++ +
Sbjct: 737 CFIHTEKNRLSQLLINLISNAIKFTTE-GYIRFGYELRGKEIYFYVSDTGCGIPKDKQKS 795

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   ++ +    +       L       +  +  +         L 
Sbjct: 796 IFGRFVKLNSFEQGTGLGLSICQTLVEHMGGTIGVDSEEGKGSTFWFTLP 845


>gi|154482552|ref|ZP_02025000.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC
           27560]
 gi|149736577|gb|EDM52463.1| hypothetical protein EUBVEN_00219 [Eubacterium ventriosum ATCC
           27560]
          Length = 436

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 67/226 (29%), Gaps = 21/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            S  +     + + H++ +P+ +I    EL++    ++  +Q        +  RL  +  
Sbjct: 207 KSSKMRQEFTANVSHELKTPLASISGYAELIETGMAKEGDIQHFASEIHKSANRLLSLIN 266

Query: 70  AFGYTGSVDSLIG-------------LGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSR 113
                  +D +               +  ++ +  +    +  +                
Sbjct: 267 DIIELSQLDVMDHQLSTTNVSLNEEVVSCVDMLQMNAEKHNITIATDIIEKDCIIKANQE 326

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
              +++ NL   A       G V  SV    +  I  +K +G      +    F +    
Sbjct: 327 MIQEVIYNLCDNAIRYNKPEGHVWASVFKKDDNIILQVKDDGIGIPEDDLNRIFERFYRV 386

Query: 171 NVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +    V  ++ +++  +  +        +S + +
Sbjct: 387 DKARSKKTGGTGLGLAIVKHISEQHEAEIQIDSTLGEGTTISIIFK 432


>gi|115373113|ref|ZP_01460415.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|115369869|gb|EAU68802.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
          Length = 1172

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 60/243 (24%), Gaps = 30/243 (12%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
            +       + +  + A+  L + + H+I +P+  I ++L             +  +    
Sbjct: 778  LQSTRERLVHAEKMAAVGTLAAGVGHEINNPLAFIISNLHYASLEVKHAAQQEPDQERWA 837

Query: 58   -----------------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                                     F R+   +   VD    L       +  +    RV
Sbjct: 838  EVEQALSEALLGADRVRRIVQDLKTFSRVQPEHPQRVDLHEVLELALSFADAEVRHRARV 897

Query: 101  QVSWTGEK--IDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKI 153
               +              ++ LNL + A  + P            + QD K + + ++  
Sbjct: 898  VKDYGTVPAVFGDEARMGQVFLNLVINAAQATPEGHADEHEIRITTRQDEKGQAVVAVSD 957

Query: 154  NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             G     PE   +I +    +        +               +              
Sbjct: 958  TGIGI-PPEVLPRIFEPFFTTKPVGVGTGLGLSICHGYVQALGGDIRVHSTLGSGTTFEV 1016

Query: 212  LLE 214
             L 
Sbjct: 1017 TLP 1019


>gi|17228774|ref|NP_485322.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130626|dbj|BAB73236.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 498

 Score =  115 bits (287), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 56/236 (23%), Gaps = 26/236 (11%)

Query: 5   ICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +   L        L +L  S + H+  +P+  I  ++EL++  G      +         
Sbjct: 259 LEQALQKERELNHLKSLFISTVSHEFRNPLSVIQTAIELIELHGQNLTETKKNTYIRRIK 318

Query: 61  IIRLKF-----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                  +          +    L +    +E            
Sbjct: 319 GAVQSMKLLMEDVLFMGKSEAAKLECNLVLLNLKEFCQELIEEFTAVETSGHEIIFTCSD 378

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLAR-- 159
            T       R    I +NL   A    P+   +        +K   IF ++  G      
Sbjct: 379 ETTNAFMDERLLHYIFVNLLSNAVKYSPQNETIRFDLTCDQTKGVAIFQIQDEGIGIPIA 438

Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F      +   +I    +    V      +K  +     +      +  L 
Sbjct: 439 DQSHLFESFYRASNSQSIQGTGLGLVIVKRCVEAHKGEIAFSSQEGMGTTFTITLP 494


>gi|294142893|ref|YP_003558871.1| nitrogen regulation protein NR(II) [Shewanella violacea DSS12]
 gi|293329362|dbj|BAJ04093.1| nitrogen regulation protein NR(II) [Shewanella violacea DSS12]
          Length = 370

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 22/230 (9%)

Query: 5   ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               L +    A  L   + H+I +P+G +  + +LL     + E+ +   +    A   
Sbjct: 139 QQLTLDAQQQAAQYLVRNLAHEIKNPLGGLRGAAQLLSRELHDPELHEFTDMIIEQADRL 198

Query: 64  LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +               +    +  + +++   +  + + +  +     D++ +  +I
Sbjct: 199 RNLVDRLLGPQKPTQHTQQNIHEVIQKVLKLVTMALPENIQFKQDYDPSIPDINMDPEQI 258

Query: 119 LLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +   +                   ++TI  Q  K     S+  NG     PE  
Sbjct: 259 QQAVLNIVQNAVQALEGVGGNIIIKTRAQHQITIGTQRHKIVIALSVIDNGPGI-KPELM 317

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V        +        A  +  R+  +         + LL 
Sbjct: 318 DTLFYPMVTGRDQGSGLGLSISHNFARLHGGRIDCQSTPGE-TEFTILLP 366


>gi|32475597|ref|NP_868591.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32446139|emb|CAD75968.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 801

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L   + +AL          + + H+I +P+ AI    ++L     + +    +
Sbjct: 373 RKRQEERLQRSEQIALAANQSKSEFLANMSHEIRTPMAAILGYADVLLGHLEDPDNRNCV 432

Query: 54  RLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            +   +    L                + +          +  +  + QV  D   VD +
Sbjct: 433 MIIKRNGEHLLSLINDILDLSRIEAGKLSVDAESVPLPRLVGDIQSLMQVRADEKNVDFQ 492

Query: 100 VQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKIN 154
           V+                 ++L+NL   A      G                  FS+   
Sbjct: 493 VEFEGRVPQSIETDPTRLRQVLINLIGNAIKFTDEGSVRLKVRFMKGADPPVVEFSIVDT 552

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      E+  ++          V        +       L       +  E        
Sbjct: 553 GIGI-SKEQQDRLFKPFSQGDASVTRKYGGSGLGLAISQRLIEMMDGEMSLESELGEGST 611

Query: 209 LSALLE 214
               L 
Sbjct: 612 FFVRLP 617


>gi|116619533|ref|YP_821689.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116222695|gb|ABJ81404.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 532

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----------GIED 47
           +       L S  L +L  L + + H+I +P+  + N   L+  +               
Sbjct: 276 LKAAQKKLLQSDRLASLGQLSASVAHEINNPVSGVLNLSMLMQRMLKDDGIPPERLAEFR 335

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------ 101
           + +  +   +      +  +           +   +  I  +    +    ++       
Sbjct: 336 KYLGQVTSETARVGRIVSDLLAFSRRGKPQQAPADINRIVAMTLSLVEHKMKLSNVAVKV 395

Query: 102 --VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNL 157
                         +  +++LNL + A  +        ++V  S  +      +  NG  
Sbjct: 396 TLCEQLPPAHCDPSQIQQVVLNLVLNAAEATQARPDRHVTVSTSSSEGMAQIFVSDNGEG 455

Query: 158 ARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE  ++I D    +  +     +       +   +   +  +            L 
Sbjct: 456 I-PPENLSKIFDPFFTTKPEGKGVGLGLAVTYGIIEAHSGDIEVKSTVGKGTTFIVSLP 513


>gi|255016502|ref|ZP_05288628.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 622

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       +  L +   + + H+I +P+ AI    +LL   +++ +    + LI++++
Sbjct: 385 LIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDLELRQNYISLIKMNN 444

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGE 107
              +  +            +       V     + D+   I+        + +       
Sbjct: 445 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPEGVEITLDACPDII 504

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166
                    +I +NL   A     +G        +D      F +   G      E    
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCGIPKDELDNI 564

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S  +    +       L  +    +     +         L 
Sbjct: 565 FARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613


>gi|228956707|ref|ZP_04118494.1| hypothetical protein bthur0005_2470 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802972|gb|EEM49803.1| hypothetical protein bthur0005_2470 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 314

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 72  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREALIEFLPELSKHNIKLQVLIPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++  E    +   G      + 
Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E            + K
Sbjct: 252 QNIFERMYRSEQSRNSSYGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308


>gi|206580985|ref|YP_002237365.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
 gi|206570043|gb|ACI11819.1| sensor kinase protein RcsC [Klebsiella pneumoniae 342]
          Length = 946

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +     +         +++ NL   A       G + + VQ + +    S++  G     
Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQCAGDYLQISVRDTGEGIPA 628

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  E         +  + 
Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687


>gi|219847783|ref|YP_002462216.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542042|gb|ACL23780.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 384

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50
           +       + S  + +L  L + + H+I +P+G + N+L  L E           E    
Sbjct: 144 LKAAQTQLVQSEKMRSLGQLVAGVAHEINTPLGYVANNLAFLAERLPALRAAPTDELGWR 203

Query: 51  QLIRLSSMSA----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            +      S                F R         D   GL    +++         +
Sbjct: 204 DVTDAIRESQTGIERIAAIVRALRVFARPDEDSLVPADVNEGLASTVRMVRAVSGPRVTI 263

Query: 101 QVSWTGEKI--DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
              +           E  ++ LNL + A  +    G V             +++  G   
Sbjct: 264 HEEYAQVPRVLCHPGELNQVFLNLLLNAVHACRGTGTVIAQTMSDGTSITVTIRDTGIGM 323

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++ +    +    +   +       +   +  +L  +        +  +L 
Sbjct: 324 DAATL-ARLGEPFFTTWPDGEGTGLGLAISREIVARHGGQLRFQSEPGRGTTVEVILP 380


>gi|115371970|ref|ZP_01459282.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370935|gb|EAU69858.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 463

 Score =  115 bits (287), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 58/219 (26%), Gaps = 22/219 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG---- 72
              + + HD+ +P+  +  S ELL          +L       +    +  R+       
Sbjct: 240 QFLAGVAHDLRTPLNTLKLSTELLLRAPTPPPPEKLRESLLRISAQLDRLNRMVGDLLDQ 299

Query: 73  ----------YTGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDLSRERAKILL 120
                          D    + ++ ++        +                    ++L 
Sbjct: 300 TRIEAGNLELRLEDTDLCTLVREVAELHRPLSQQHQIELTVPDGPVPVRGDPTRLIQVLT 359

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI---- 176
           NL   A    P GG+V + ++ S+ E + S+   G      E + +I      S      
Sbjct: 360 NLLSNAIKYSPLGGRVRVLIEQSQEEVLLSVSDEGVGIPPGE-YERIFAPFKRSASASAE 418

Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +   +     +         L 
Sbjct: 419 LPGIGLGLSVSRRIVRAHGGNIEVVSQEGAGSTFRVRLP 457


>gi|288960772|ref|YP_003451112.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288913080|dbj|BAI74568.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 593

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 65/217 (29%), Gaps = 15/217 (6%)

Query: 12  MDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIRLSSMSAI 61
             L       + I H+I +P+G I  S ++L                V+  +        
Sbjct: 368 EKLAILGEAAAVIAHEIRNPLGIIKTSSQVLRMKSQPPEASDRLIGFVLDEVGRMEALVQ 427

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAK 117
             L + R        VD    L ++ + I   +   + +                 +  +
Sbjct: 428 ELLDYARPKAAMRQVVDLGAELRNVLEFIAAEMFRRRVLPKVELPDGPLPVQGDPSQLHQ 487

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            LLN+ + A  ++P GG ++++     +E   S+   G      +   ++ +  V +   
Sbjct: 488 ALLNILLNAMEAMPDGGALSVTALREGDEVAVSIADTGVGI-PEDLRDRVFEPFVTTKRR 546

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +   +               L 
Sbjct: 547 GTGLGLARVQDIMERHGGSVHFVSAPAVGSTFILRLP 583


>gi|262166717|ref|ZP_06034454.1| osmolarity sensory histidine kinase EnvZ [Vibrio mimicus VM223]
 gi|262026433|gb|EEY45101.1| osmolarity sensory histidine kinase EnvZ [Vibrio mimicus VM223]
          Length = 438

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 64/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +                  + L NL +
Sbjct: 280 YLKPVNREAFEAVDINEIANDVASSEGGYEVQIETDLQVGLTPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K      ++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432


>gi|261409395|ref|YP_003245636.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
 gi|261285858|gb|ACX67829.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. Y412MC10]
          Length = 357

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIE-DEVMQLIRLSSMS 59
           +     + S  L     L + I H+I +P+ +I   ++L+       DE   +I      
Sbjct: 131 QEEKRLIQSDKLSMAGQLAAGIAHEIRNPMTSIKGFVQLIRSGAGRKDEYFDIISSEIER 190

Query: 60  AI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDL 111
                   L   +         D    L  +  ++     +     ++            
Sbjct: 191 IELIVSELLFLAKPQSVKFERADIRQLLEQVITLLNTQAIIHNVEIITDFGEQEANVDGD 250

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                ++ +N    A  S+P GG++TI   + S          NG         +++ + 
Sbjct: 251 VNHLKQVFINFIKNAVESMPDGGELTIRLERGSDETVAIHFTDNGCGIPES-ILSRLGEP 309

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    + + F     +  +++ ++           ++ +L 
Sbjct: 310 FFTTKEKGNGLGFMISKKMIEDHRGQVYVTSKLQEGTTITVMLP 353


>gi|168180587|ref|ZP_02615251.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226949882|ref|YP_002804973.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|182668500|gb|EDT80479.1| putative phosphate regulon sensor protein [Clostridium botulinum
           NCTC 2916]
 gi|226842408|gb|ACO85074.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 569

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   D+    ++ +Q+I   +      +  + 
Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + ++ +        I    +  +
Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEKVPLLIGNKDKYNQ 463

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G V+I  +  K   +F ++  G      E   +I +        
Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|30021739|ref|NP_833370.1| sensor protein atoS [Bacillus cereus ATCC 14579]
 gi|229146207|ref|ZP_04274582.1| hypothetical protein bcere0012_33520 [Bacillus cereus BDRD-ST24]
 gi|296504142|ref|YP_003665842.1| sensor protein AtoS [Bacillus thuringiensis BMB171]
 gi|29897294|gb|AAP10571.1| Sensor protein atoS [Bacillus cereus ATCC 14579]
 gi|228637266|gb|EEK93721.1| hypothetical protein bcere0012_33520 [Bacillus cereus BDRD-ST24]
 gi|296325194|gb|ADH08122.1| sensor protein atoS [Bacillus thuringiensis BMB171]
          Length = 510

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500


>gi|325660820|ref|ZP_08149448.1| hypothetical protein HMPREF0490_00180 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472894|gb|EGC76104.1| hypothetical protein HMPREF0490_00180 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 415

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+  I  +   L   ++   ++  ++L      
Sbjct: 174 KEEAAVMAQNEQLRANLLRAISHDLRTPLTVISGNASNLLSNEDKFDKETKLRLYGDIYD 233

Query: 59  SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +                  SV+ +  +           + + ++ +    E 
Sbjct: 234 DSMWLINLVENLLSVTRIEDGRLNLKMSVELIDEVTAESIRHLPRKSAEYQIHLKKNDEF 293

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     ++++NL   A    P G  + ++ Q  +N    S+  NG      E   
Sbjct: 294 LMAKMDVRLILQVIINLIDNALKYTPPGSVIEVASQKKENMVEVSVSDNGPGI-SAEAKE 352

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +     T        S  +       +   ++  +  E    H  + +  L 
Sbjct: 353 HIFEMFYTGTHKIVDSRRSLGLGLSLCRSIIEAHEGSIRVEDNHPHGCIFTFTLP 407


>gi|304406309|ref|ZP_07387966.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304344893|gb|EFM10730.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 503

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 62/240 (25%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I   L   D    L S I HD+ +PI  I   +E + +      E +     +  +
Sbjct: 245 LNESIQLQLQYEDNRKQLISNISHDLKTPITTIKGYVEGIRDGLADSPEKLDKYVGTIYA 304

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-------------EDFIAVDKRVQVSWTG 106
            +  +  +         +D        E+V               +      RV +    
Sbjct: 305 KVTDMGRLVDELLLYSKLDLRREPYSFERVDLAAFIEDAVEESGFELEEQGIRVTLEGER 364

Query: 107 EKIDLSRERAK----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARF 160
            +        +    +L NL   +   + +  +        +      ++   NG     
Sbjct: 365 LQDTDVMADRQKLRRVLGNLIQNSVKFMDKPDRSITLRLREEGRATLVVEVTDNGAGIAD 424

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              P  F +                +       +   +   +  E        +   L K
Sbjct: 425 EALPHIFERFYRAEASRNSRTGGSGLGLAIAKQIIEGHGGTIEAESQLGAGTTMRIRLRK 484


>gi|254421559|ref|ZP_05035277.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196189048|gb|EDX84012.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 466

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51
           +A+     +S +           S I H++ +P+  +H  L+  L         + E ++
Sbjct: 232 LAQTCNTMISRLSAAWDQQRRFVSDISHELRTPLTLVHGYLQSTLRRSCNLSAPQKEGLE 291

Query: 52  LIRLSSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +    +   I  L+ +       +  +   ++         +VI        R+ +    
Sbjct: 292 IAAAEADRTIKLLQELLDLARADSGNFQFKIERESLDDITREVIGICRYATGRIHLKLEP 351

Query: 107 EKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++LLNL   A         +T++++   N+    +K  G      +   
Sbjct: 352 ATALVDRNRLKQVLLNLIDNALKYSIASEPITVTLKKMGNQAYIEVKDTGRGIPPSDLN- 410

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D                 +    V  L       L  +       V +  L 
Sbjct: 411 KIFDPFYRVDEDRSRATGGTGLGLSIVKTLVEGMNGTLKVQSKLGEGSVFTVSLP 465


>gi|42780657|ref|NP_977904.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
 gi|42736577|gb|AAS40512.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
          Length = 423

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L D  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLRDYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PSAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|116747680|ref|YP_844367.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696744|gb|ABK15932.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 836

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           +      S ++ + +L   I HD  + + AI  ++ L      + G   E +     + M
Sbjct: 454 QEERIKASKLESIGVLAGGIAHDFNNILTAIIGNISLAKLYGGQGGRVSEKLTEAERACM 513

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSR 113
            A    + +         +  +I + D       F                         
Sbjct: 514 RAKNLTQQLLTFSKGGEPIKKVIDVSDFLHEAVHFVLTGSNVRSVFFLPDDLWPVQCDEG 573

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD-------------SKNENIFSLKINGNLARF 160
           +  +++ NL + A  ++P GG + IS ++                     +K  G+    
Sbjct: 574 QMGQVINNLIINAKQAMPDGGTIEISAENVILNAGDQALPLKPGRYLRIGVKDYGHGI-P 632

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E  T+I D    + +    +       +  +++  +  E            L 
Sbjct: 633 EEALTRIFDPYFTTKLKGSGLGLATAYSIIKKHEGYIQVESRVGEGAAFHIYLP 686


>gi|329766325|ref|ZP_08257872.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329137227|gb|EGG41516.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 365

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 69/220 (31%), Gaps = 13/220 (5%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
             F  + ++L+  + S++ HDI +P+  +   ++L+     + E   +    +       
Sbjct: 144 KNFENNRLELIGKMSSKMAHDIRNPLSVLKMQVDLMKLKQKKQEDEIMSSSITRMDKAIS 203

Query: 65  KFMRL------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                                   L DI     + + +  +V ++ + +   +  +  KI
Sbjct: 204 DITNQINDVLTFIRQPNLELISCDLKDIINNSIEQLQIPDKVTITQSVDSRMIRCDMTKI 263

Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
              +         ++   G+++I V++++      +  +G          +I +    + 
Sbjct: 264 KGIITNILHNGIQAINGEGEISIVVEENEKTIDIKITDSGPGIPEN-IMDKIFEPMFTTK 322

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +     +     +   +  +         +  L K
Sbjct: 323 ALGTGLGLASCVQFLDMHGGTIKVKNNP---TTFTITLPK 359


>gi|307634756|gb|ADI83684.2| sensor histidine kinase response regulator, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 754

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 68/245 (27%), Gaps = 31/245 (12%)

Query: 1   MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
           M           M+ V  L   I HD  + +GAI  S EL      E     E+++++  
Sbjct: 366 MQLESQLRHAQKMEAVGTLAGGIAHDFNNILGAIIISTELALDDAKEGASNPELLEIVLN 425

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEK 108
           ++      +  +             + +  I +     +       +             
Sbjct: 426 AAERGRNLVTQILAFSRQGEQKRQTVRIAPIVKECLKLLRASLPTTIDIRPAISCEDAMA 485

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLK 152
                +  ++++NL   A  ++     +                T     +      S+K
Sbjct: 486 SIDPTQIHQVIVNLCTNAAHAMHGKVGMLEVTLTAVTLHEDITGTHPDLHAGPYVELSVK 545

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+     E   +I D    +        +    V  +  ++   ++ E        + 
Sbjct: 546 DTGHGM-GSEVLERIFDPFFTTKEQGRGTGLGLPVVYGIVKDHGGGIVVESEPGSGTTVR 604

Query: 211 ALLEK 215
            L+ +
Sbjct: 605 VLIPR 609


>gi|307318241|ref|ZP_07597677.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306896282|gb|EFN27032.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 505

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 60/232 (25%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIR---- 54
           +     L+ ++ +  + S + H++  P+ AI N       LL ++               
Sbjct: 264 QAELARLARLNEMGEMASTLAHELNQPLSAIANYSHGCTRLLRDMDDAVATRIREALEEV 323

Query: 55  -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWT 105
                 +        +F+          D    + +   +      +         +   
Sbjct: 324 ASQSLRAGQIIKHLREFVTKGETEKAPEDIRKLVEESAALALVGSREQGVRTVFEYLPGA 383

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
              +    +  ++L+NL   A  ++    +      ++     E    ++  G      E
Sbjct: 384 EMVLVDRIQVQQVLINLMRNAIEAMRHVDRRELTIRTMPADPGEVAVVVEDTGGGI-PEE 442

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              Q+    V +      I       +   +   +     +         L 
Sbjct: 443 VAGQLFKPFVTTKASGMGIGLSISKRIVEAHGGEMTVSKNEAGGATFRFTLP 494


>gi|288934293|ref|YP_003438352.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
 gi|288889022|gb|ADC57340.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
          Length = 946

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +     +         +++ NL   A       G + + VQ + +    S++  G     
Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQCAGDYLQISVRDTGEGIPA 628

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  E         +  + 
Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687


>gi|115376646|ref|ZP_01463875.1| hypothetical protein STIAU_3979 [Stigmatella aurantiaca DW4/3-1]
 gi|115366327|gb|EAU65333.1| hypothetical protein STIAU_3979 [Stigmatella aurantiaca DW4/3-1]
          Length = 722

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 75/240 (31%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIED 47
            K +   L  S  + ++  L + I H++ +P+  +  +LE +             V    
Sbjct: 343 RKQMQARLMLSDRMASMGTLSAGIAHELNNPLSYVIANLEFVHATLQPAEFDPARVPEWR 402

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +V+   R  +      ++ ++            + L  +   +      + + +     +
Sbjct: 403 QVLDEAREGAERVRQIVRQLKTFSRVEEERQEQVELHRVLDSVAQMATSEVKHRARLVKQ 462

Query: 108 KID------LSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGN 156
                       +  ++ LNL + A  ++P G          + +D +   +  ++  G 
Sbjct: 463 YGPLPAITGNDGKLFQVFLNLVINAAHAIPEGCVEDHEIRLATFEDERGWAVVEVRDTGG 522

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE  ++I +    +        +     + L   +   +  E       V   +L 
Sbjct: 523 GI-RPENLSRIFEPFFTTKPQGVGTGLGLSICLTLVRAHGGDITVESTVGKGTVFRVMLP 581


>gi|16263123|ref|NP_435916.1| FixL oxygen regulated histidine kinase [Sinorhizobium meliloti
           1021]
 gi|307305157|ref|ZP_07584906.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|120208|sp|P10955|FIXL_RHIME RecName: Full=Sensor protein fixL
 gi|49404|emb|CAA79897.1| FixL [Sinorhizobium meliloti]
 gi|14523785|gb|AAK65328.1| FixL oxygen-regulated histidine kinase [Sinorhizobium meliloti
           1021]
 gi|306902497|gb|EFN33092.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 505

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 60/232 (25%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIR---- 54
           +     L+ ++ +  + S + H++  P+ AI N       LL ++               
Sbjct: 264 QAELARLARLNEMGEMASTLAHELNQPLSAIANYSHGCTRLLRDMDDAVATRIREALEEV 323

Query: 55  -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWT 105
                 +        +F+          D    + +   +      +         +   
Sbjct: 324 ASQSLRAGQIIKHLREFVTKGETEKAPEDIRKLVEESAALALVGSREQGVRTVFEYLPGA 383

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
              +    +  ++L+NL   A  ++    +      ++     E    ++  G      E
Sbjct: 384 EMVLVDRIQVQQVLINLMRNAIEAMRHVDRRELTIRTMPADPGEVAVVVEDTGGGI-PEE 442

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              Q+    V +      I       +   +   +     +         L 
Sbjct: 443 VAGQLFKPFVTTKASGMGIGLSISKRIVEAHGGEMTVSKNEAGGATFRFTLP 494


>gi|46202248|ref|ZP_00053520.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 454

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 55/238 (23%), Gaps = 28/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H++ +P+ A+    E +         ++          
Sbjct: 214 AKQEAEAANRAK--SQFLATMSHELRTPLNAVIGFSEAILAGAAGPASLERCVEYMELIH 271

Query: 62  IRLKFMR-------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
              + +R                          +         +E            V  
Sbjct: 272 SAGQHLRALIEDILDVSRIEAGRTELDEEDCDPTELVRAAARLLEHKSVVSGVDFTVVIA 331

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     R   +ILLNL   A    P GGKV I      +     +   G     PE
Sbjct: 332 PGLPRMRLDPRRIRQILLNLAGNALKFTPTGGKVGICATLVPDGLALVVSDTGIGI-APE 390

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I                   +    V      +   +  +        ++ LL 
Sbjct: 391 HHAKIWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLDSAPGQGTRITVLLP 448


>gi|262275269|ref|ZP_06053079.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
 gi|262220514|gb|EEY71829.1| hypothetical two-component sensor [Grimontia hollisae CIP 101886]
          Length = 725

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 70/248 (28%), Gaps = 35/248 (14%)

Query: 3   KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           +     L S  + A           + + H+I +P+  I     LL    +++E  + I 
Sbjct: 177 REYNAELKSAKMQAEQANQKKSEFLANMSHEIRTPMNGIIGMASLLKGTPLDEEQREFIE 236

Query: 55  LSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +   S++  L  +     ++                 +    +  + ++      ++   
Sbjct: 237 MLETSSLSLLDIINDILDFSKIEAGKLELDSVELNLFELCKDIEHLFRLRTKEKGLEFEC 296

Query: 101 QVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKIN 154
            +    T   +  +    ++++NL   A      G       Q ++        F ++  
Sbjct: 297 GLDQNLTPLLVGDAPRLRQVMINLVGNAVKFTQSGKVSVSIRQVAEAGDNITVTFEVEDT 356

Query: 155 GNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV- 208
           G      +  T        DG++        +       +       +  E  +      
Sbjct: 357 GIGIPADKLKTVFEKFEQADGSMSRNFGGTGLGLAISSQIVELMGGEIEVESREGEGSRF 416

Query: 209 -LSALLEK 215
             +   E+
Sbjct: 417 FFTVTFER 424


>gi|253577301|ref|ZP_04854619.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843305|gb|EES71335.1| PAS sensor protein [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 586

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 59/230 (25%), Gaps = 28/230 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +PI A+    E L      +       +Q+I          +  
Sbjct: 351 ERMRSEFVANVSHELKTPIAAVKGFAETLLAGGVKDEETTRSFLQIIYDEGDRLNRLIGD 410

Query: 67  MRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +              +      +    L ++     +  ++     V             
Sbjct: 411 LLELSKIESKRVPLEYAPVQLSELFDSLYEVLLPAAEKKSISMSHDVPEHLFIEADEDRL 470

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQIVDG 170
            +I +NL   A +    GGKV +S           +    +   G      +   +I + 
Sbjct: 471 RQIFMNLLSNAISYSLEGGKVRVSASIIGEGGDEEKVRILVSDTGIGIPKKDLP-RIFER 529

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +     +    V  L   ++  +  E            L 
Sbjct: 530 FYRVDKARSRSSGGTGLGLSIVKHLVDLHRGTIRVESKVGEGTTFILELP 579


>gi|237797945|ref|ZP_04586406.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|330874562|gb|EGH08711.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330965664|gb|EGH65924.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331020796|gb|EGI00853.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 436

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGDLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426


>gi|222095188|ref|YP_002529248.1| sensor histidine kinase, putative [Bacillus cereus Q1]
 gi|221239246|gb|ACM11956.1| sensor histidine kinase, putative [Bacillus cereus Q1]
          Length = 423

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PSAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|146309327|ref|YP_001189792.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145577528|gb|ABP87060.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 965

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 65/237 (27%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54
           M ++    +  +   +   S + H++ +P+ AI  SL L++   +        +++ + +
Sbjct: 475 MDQSEVKRIERLK--SEFVSTVSHELRTPLTAIAGSLGLINGGALGVVPEGMRQMLSIAQ 532

Query: 55  LSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +S      +  +                  +    L +     + + A  +        
Sbjct: 533 ANSQRLSHLINDLLDMDKLEAGKMQFDLQPCELAGQLEEALASNQAYAAQRQVQLRLLDC 592

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             + +  +     ++L N    A    P  G+V +  +         +   G+      +
Sbjct: 593 PPVRVRVDNMRLQQVLANFISNAVKYSPPAGEVLLRAERRDTRVRVEVSDQGSGIAAAFR 652

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I                   +       L      ++  + +          L 
Sbjct: 653 -DRIFAKFSQADASDSREKGGTGLGLAISKELIERMGGQIGFDSVVGQGSTFWFELP 708


>gi|89069582|ref|ZP_01156926.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           granulosus HTCC2516]
 gi|89044917|gb|EAR51007.1| phosphate regulon sensor histidine kinase, putative [Oceanicola
           granulosus HTCC2516]
          Length = 346

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 68/240 (28%), Gaps = 35/240 (14%)

Query: 9   LSSMDLVALL----CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMS 59
           +++++    +     + + H++ +P+ A+   +E L      +    +  + ++   +  
Sbjct: 106 ITALEEAGQMRRDFVANVSHELRTPLTALVGFVETLRGPAKDDAAARERFLGIMEKEAGR 165

Query: 60  AIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107
               ++ +                 +     + D+ ++     A +              
Sbjct: 166 MARLVEDLLSLSRVEEEERLRPATPLPLADLVRDVAELFRPLAARNGLELVVRVPDAPFS 225

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARF 160
               + +  ++L NL   A      GG+                     +++ +G     
Sbjct: 226 VPGDAGQVRQVLNNLLENAIKYGTGGGRVELTLSGPRQEPSLRGEGVRLAVRDHGEGIDS 285

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++ +            +    +    V  + + ++ RL  E         + +L 
Sbjct: 286 HHL-ARLTERFYRVDTHRSREVGGTGLGLAIVKHIVNRHRGRLRIESERGKGSRFTVILP 344


>gi|304439016|ref|ZP_07398936.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304372505|gb|EFM26091.1| sensor histidine kinase YycG [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 593

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 64/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + H++ +PI  I +  E + +V ++       +++I   +      +  +      
Sbjct: 373 FVANVSHELKTPITTIGSYTETMLDVDMDLDSIRNFLRVIDRENNRMARLVTDLLQLSNM 432

Query: 74  TGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
                               +I  +         +V +    +   +  +R    ++  N
Sbjct: 433 DYKETKWNYEAVDTYDFLSTNINSLDMLIKEKHHKVTLDVPMDINSMYVDRHGADQVFRN 492

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176
           +F  A     +GG++ ++ +         ++ NG   +  +    F +      +    +
Sbjct: 493 IFSNALKYTRKGGEIKVTAKSEGASVEIIVEDNGIGIQREDLNKIFERFYRVEKSRSREM 552

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +      R+  E        ++    
Sbjct: 553 GGTGLGLSIAKEILESMGGRISIESEIGVGTKMTLRFP 590


>gi|253698911|ref|YP_003020100.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251773761|gb|ACT16342.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1108

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 67/236 (28%), Gaps = 31/236 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------- 59
            S  + A+  L   I HD  + + AI     +L     E   +Q      +         
Sbjct: 734 QSQKMEAIGTLTGGIAHDFNNILTAIIGYTTMLHLELDEAHPLQRKVGEILRASERAASL 793

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L + R   G          + +++ +++  I  +  ++     E++ +  +  +I 
Sbjct: 794 TRSLLAYSRRQAGNPAPTGLNAIVNNVDILLQRLIPENIELKSQLAPEELSIMADSGQIE 853

Query: 120 LNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +      A  ++P               R            +  + S+  +G      
Sbjct: 854 QVIMNLVVNARDAMPEGGVLSLSTESMTLDREFVAKHGYGRPGSYALLSVADSGVGMDER 913

Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  +I +    +        +    V  +  ++   +       H  V    L +
Sbjct: 914 TR-DRIFEPFFTTKAPGKGTGLGLAMVYGIVKQHGGFINCYSEPGHGTVFRIYLPR 968


>gi|146309326|ref|YP_001189791.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145577527|gb|ABP87059.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 640

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
            +I        L     S + H++ +P+ AI  SL L++            +++++ + +
Sbjct: 401 SDISERKRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGAVPENMQQMLEIAQSN 460

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---T 105
           S      +  +                 +     L       + +    +          
Sbjct: 461 SQRLRHLIDDLLDMDKLVAGKMRFDLQPLALRPLLQQALHDNQPYAERQQVRLQLLAGSD 520

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            + +  ++   ++L NL   A      G  V +S          S++  G       K  
Sbjct: 521 CQVLADAKRVEQVLANLLANAAKFSSPGQPVELSAAPRDGWVRISVRDQGLGIPTSFKPR 580

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +       L      R+  +  +         L 
Sbjct: 581 IFSKFAQADAGDTRQQGGTGLGLAISKELIERMGGRIGFDSQEGQGSTFWFELP 634


>gi|91794886|ref|YP_564537.1| osmolarity sensor protein [Shewanella denitrificans OS217]
 gi|91716888|gb|ABE56814.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
          Length = 438

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA+++          ALL + I HD+ +P+  I  + E++  ++  +++ ++  I     
Sbjct: 223 MAQSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKEGIVTDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R         D +  L       E     +  + +    E    S    ++
Sbjct: 280 IINQFIAYIRHDRETPREPDQIHRLIQEIAQQEMHREGEIELDLQDCPEIPMQSVAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVEST 175
           L NL   A        K++   +   N   FS++ NG      +  E F     G+    
Sbjct: 340 LSNLVENAFRYGNGWIKISAYSER--NYVCFSVEDNGTGIAADKIDELFQPFTQGDSARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   +  ++         +     L 
Sbjct: 398 SMGSGLGLAIIKRIVDRHHGKVKLSNRAQGGLCAKVWLP 436


>gi|52143462|ref|YP_083368.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51976931|gb|AAU18481.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 347

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 70/232 (30%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G      +    
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGAISIKLKEYETLVEVRIRDTGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           F +    +           +    V  +   ++  +  E  + +       +
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVRI 345


>gi|56961826|ref|YP_173548.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56908060|dbj|BAD62587.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 502

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
            K     + S  L A+  + + + H++ SP+ AI  + +L+            ++  I+ 
Sbjct: 261 RKMEVQLIHSGKLAAIGEMAAGVAHELNSPLTAILGNSQLILRNMNNHDSLFPLLTDIKN 320

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
                   +  +         V     + +        +          ++     +   
Sbjct: 321 CGDRCKRIINSLLTFSRQDDFVFESCSINEAVNETLNLLKYQLEKEKVIIKTELQKDIPF 380

Query: 111 LSRERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +   +A+I   +  +   +       L    ++ I      +E   S+  NG        
Sbjct: 381 IEGNQAQIEQIIINLLLNAKAALEETLREKKEILIKTSFQFHEVHLSVTDNGIGIEEERL 440

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I      +    +   +     I +A  +   +      +        L 
Sbjct: 441 SE-IFHPFHTTKSSKEGTGLGLSVSIGIAKSHGGTIEVHSKWNKGSTFILKLP 492


>gi|238793867|ref|ZP_04637487.1| hypothetical protein yinte0001_24800 [Yersinia intermedia ATCC
           29909]
 gi|238726770|gb|EEQ18304.1| hypothetical protein yinte0001_24800 [Yersinia intermedia ATCC
           29909]
          Length = 904

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +       + V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETALNHHHINVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH    +G  + I      +     +  NG      +
Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGQGALLGIWAAVQGDWLNVEVWDNGPGVTLGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   D        L 
Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVENNKDGGASFRFTLP 883


>gi|332526668|ref|ZP_08402770.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
 gi|332111071|gb|EGJ11103.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
          Length = 598

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 64/246 (26%), Gaps = 35/246 (14%)

Query: 2   AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           A+ +   L      A           + + H++ +P+  I  +L+L+ +  ++     L+
Sbjct: 203 AEAVNTTLQRAKQAADAASIAKSQFLATMSHEMRTPMNGILGALDLMRDTPLDKRQRALV 262

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------------- 98
           R +  S    L  +     ++      + L      +    A                  
Sbjct: 263 RTAVASGESLLCIIDDVLDHSTIESGKLKLDPTPMSMHAVAASAAALLRSTAEQRGLKVD 322

Query: 99  -RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKI 153
            +++       +  +    ++LLNL         RGG                  F +  
Sbjct: 323 LQIEADVPDAVVGDASRLKQVLLNLIGNGIKFTERGGVTLRLSRAPAPPGMCGVRFEVAD 382

Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G          ++             +     +       +      R+  + ++    
Sbjct: 383 TGIGIPAQAVP-KLFQPFSQVDATRSRSHGGTGLGLSISQRIVAAMGGRITVDSVEGRGS 441

Query: 208 VLSALL 213
             S  L
Sbjct: 442 RFSFTL 447


>gi|320108478|ref|YP_004184068.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319926999|gb|ADV84074.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 858

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%)

Query: 2   AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
            +     +   + L   + S I H+I +P+ +I N + LL       G   + + L    
Sbjct: 629 EREAALRMTEKLALTGRMTSVIAHEINNPLESITNLMYLLRTEVSKVGPAADYIALAESE 688

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKI 109
            +      K        T        +G +   +            V   ++        
Sbjct: 689 LLRISGITKQTLRWNRETTGAPERSIVGALFSEVLRLFAGKIRNRQVKVTIRTGEEVSIY 748

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S +  +++ NL   A  +   GG V +S  +++   +  ++ +G          Q+  
Sbjct: 749 GTSGQLLQVIANLVSNAVDAANVGGNVWLSATETETGAVIEVEDDGIGINAK-VQAQLFK 807

Query: 170 GNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  D  + +  Y    +A  +   L  E            L 
Sbjct: 808 PFFSTKGDLGNGLGLYISKEIAERHGGELSVESTVGAGTTFRFSLP 853


>gi|291447256|ref|ZP_06586646.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
           15998]
 gi|291350203|gb|EFE77107.1| two-component system sensor kinase [Streptomyces roseosporus NRRL
           15998]
          Length = 542

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 65/230 (28%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55
           + K +    +  +      + + H++ +P+ AI    E+L++     + M      L+  
Sbjct: 293 LEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVS 352

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +      ++ +     +          D  +       +          +         
Sbjct: 353 ETRRLNDLVENLMEVTRFDAGTARLVLDDVDVADQVTACIDARAWLDAVHLDAERGMMAR 412

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
              R    IL NL   A         V + V+    E +  ++ +G        P  F +
Sbjct: 413 LDPRRLDVILANLIGNALKHGG--SPVGVRVRTEGEELVIEVRDHGPGIPEEVLPHVFDR 470

Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +   +     +  AH +   +      D   V +  L +
Sbjct: 471 FYKASASRPRSEGSGLGLSIAVENAHIHGGDISAANSPDGGAVFTLRLPR 520


>gi|228953917|ref|ZP_04115956.1| hypothetical protein bthur0006_32930 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805885|gb|EEM52465.1| hypothetical protein bthur0006_32930 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 510

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500


>gi|196034278|ref|ZP_03101688.1| sporulation kinase A [Bacillus cereus W]
 gi|218904768|ref|YP_002452602.1| sporulation kinase A [Bacillus cereus AH820]
 gi|195993352|gb|EDX57310.1| sporulation kinase A [Bacillus cereus W]
 gi|218539246|gb|ACK91644.1| sporulation kinase A [Bacillus cereus AH820]
          Length = 510

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +       +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|90423379|ref|YP_531749.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90105393|gb|ABD87430.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 923

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 62/243 (25%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K     +   + V+       + + H+I +P+  I    +LLD+  +  +  Q +   
Sbjct: 400 LEKAQEVEIERANEVSRAKTDFLATMSHEIRTPLNGILGMAQLLDDSPLSAQQRQWLDAV 459

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102
           + S  + L  +      +      + L  I    ++ +                      
Sbjct: 460 AQSGSLLLAILNDILDLSKIEAGRMELESIAFSPDELLRTIAAAMTPQAAGKGLAFLTEY 519

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKING 155
            +     I    + +++LLNL   A                    +  +    F +   G
Sbjct: 520 PALPARLIGDPAKISQVLLNLVGNAVKFTHSGEVVLSVNWAPDEQRPDRGRMEFRVTDTG 579

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                          +              +       +      ++  E       V +
Sbjct: 580 IGIARQAVPHVFDPFSQSDSSITRRFGGSGLGLAICKRIIDAMGGKITVESTLGCGSVFT 639

Query: 211 ALL 213
            +L
Sbjct: 640 VVL 642


>gi|323488189|ref|ZP_08093440.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
 gi|323398193|gb|EGA90988.1| Hybrid signal transduction histidine kinase [Planococcus
           donghaensis MPA1U2]
          Length = 953

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 80/231 (34%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           ++I        + + L S + H++ +P+ ++    ELL     +   ++  ++ I   + 
Sbjct: 569 RDITREHEVDKMKSELVSTVSHELRTPLSSVLGFTELLLNKQLKPEKQERYLKTIYKEAK 628

Query: 59  SAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +               +       + + +  +E+     +     +  +      
Sbjct: 629 RLTNLINDFLDLQRMESGDQVYRMDKLAVNELIIETVEKFRTQNMHSIVFIDDASDVIVE 688

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK------ 163
                 A++L+NL   A    P+GG VTIS+++  N    ++K  G      +       
Sbjct: 689 GDRERIAQVLMNLVGNAIKFSPQGGSVTISMKNDLNNLSVTIKDEGIGIPTEDIPKLFSK 748

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +I + +    I    +       +  +++ ++  E  ++    +   L 
Sbjct: 749 FQRIDNSS-RRKIGGTGLGLAICQEIILQHEGKIWIESKEEQGTAVHFELP 798


>gi|317475520|ref|ZP_07934783.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908351|gb|EFV30042.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 775

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K     +S M L   +   I H++ +P+  I   ++ + +   +  + + +     +   
Sbjct: 244 KERQKEVSEMKLRFFI--NISHELRTPLTLILAPVQEMLDKVSDRWLHRQLEHVQKNTNR 301

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------------- 107
            L  +     Y  +   +  L     +I + +  +                         
Sbjct: 302 LLHLVNQLMDYRRAELGVFNLKVRLNLIHNVVEKNFLFYERLAQRKRIAYNLSSNAEGRE 361

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                     I+ NL   A      G  +T+++++  +E +  +K  G+     +K  +I
Sbjct: 362 IFCDPDYMELIVNNLLSNAFKYTGEGKSITMTLKEENHELLLQVKDTGSGIPI-DKQGKI 420

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++  +     I    V  L   +  R+  E  +      S  L 
Sbjct: 421 FERFYQADNEHLGSGIGLSLVQRLVELHHGRIELESEEGVGSTFSIYLP 469


>gi|309388338|gb|ADO76218.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium praevalens
           DSM 2228]
          Length = 921

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 62/241 (25%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     + +    +   S + H+I +P+ +I    ELL E  + ++  + I +   + 
Sbjct: 389 LKQARDKAMEASRAKSEFLSTMSHEIRTPMNSIIGMAELLQETELSEQQQKYINIFQNAG 448

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +             I      +  +  + +  R+    
Sbjct: 449 ESLLTLINDILDLSKIEAGRIELEAEKFNLVETVENIAEMISLRAFKKGLELPLRIAAEV 508

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLA 158
               I  S    +IL+NL   A     +G         +      + + IF++K  G   
Sbjct: 509 PECVIGDSERIRQILINLLGNAVKFTEKGQVFLDLRIDSEFKSKDQKQVIFAIKDTGIGI 568

Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              ++                      +       L      ++  +            L
Sbjct: 569 EKAKQKQIFDSFTQADSSSTRKYGGTGLGLTISKQLVELMGGKIWLKSTPQLGSTFYFSL 628

Query: 214 E 214
            
Sbjct: 629 P 629


>gi|295702577|ref|YP_003595652.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294800236|gb|ADF37302.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 713

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 71/225 (31%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLS-SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            K     L  S  L     L + + H+I +P+ ++   + LL E          I +  +
Sbjct: 486 RKKAEEKLRTSEKLAVVGELAAGVAHEIKNPLTSLKGFVHLLKEQHPKDALYIDIMETEL 545

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKI 109
           + +       ++  K   +          +  +  + +       V    +      +  
Sbjct: 546 ERMNGIVEEFLMLGKPQVMKVESLNMQALVQEVCSLLEPEAVEKEVAFIFERDDQLPKVY 605

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +N+   +  ++P GG + I+++  +N     L   G      E+ T+I +
Sbjct: 606 GDKNQLKQVFINIIKNSIEAMPEGGAIHITIKVKENHLWLQLADEGQGI-PSERLTKIGE 664

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +   +  ++      D    +  L  
Sbjct: 665 PFYSTKEKGTGLGLMVSYRIIKAHHAQMTFSSELDKGTSVDILFP 709


>gi|168237284|ref|ZP_02662342.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194734600|ref|YP_002115343.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|194710102|gb|ACF89323.1| sensor kinase protein RcsC [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197289636|gb|EDY28999.1| RcsC Alpha-Beta-Loop (ABL) family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 948

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 70/240 (29%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + +             +++ NL   A       G + + V+   +     ++  G     
Sbjct: 572 EPNVPVSLNGDPMRLQQVISNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|160937677|ref|ZP_02085037.1| hypothetical protein CLOBOL_02567 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439322|gb|EDP17074.1| hypothetical protein CLOBOL_02567 [Clostridium bolteae ATCC
           BAA-613]
          Length = 468

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 58/235 (24%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M+  +              + + HD  SP+ +I   LE + +      + ++ +  +   
Sbjct: 233 MSDELNKMEEYQK---NFIANVSHDFRSPLTSIKGYLEAILDGTIPAEMYEKYLSRVISE 289

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWT 105
           +       + M          +    + D    + D     E                  
Sbjct: 290 TERLHKLTESMLTLNSLDARGYLSRTNFDINRVIKDTAASFEGTCESKNVSFDLTFSDDI 349

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162
                   +  +++ NL   A         + I       +   S+K  G         +
Sbjct: 350 QMVFADLGKIQQVMYNLIDNAIKFSHHDSTIYIQASGRYEKIFVSVKDTGIGIPKDSLKK 409

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + +    ++    D     +    V  +   +   +     +         L +
Sbjct: 410 IWERFYKTDLSRGKDKKGTGLGLSIVKEIIQAHGENIDVVSTEGVGTEFIFSLPR 464


>gi|303248593|ref|ZP_07334849.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302490034|gb|EFL49956.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 481

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 71/231 (30%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS 56
            +     + +  L ++  L + + H + +P+  I  S ++  +         + +L+   
Sbjct: 239 ERRQDQLVQTKKLSSIGTLTAGVAHQLNNPLNNISTSSQIALDELETADPAFLRKLLANI 298

Query: 57  SMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGE 107
               +         L+F R        V      G   +++        R+         
Sbjct: 299 HQETLRARDIVQGLLEFSRAREFSLRPVPLSELAGRTLRLVSSQGGSGVRLTSDVPDDLV 358

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFT 165
               +    + LLNL +    ++   G+V+          + + ++   G      E  +
Sbjct: 359 IPADASRLQEALLNLLINGIQAVDGKGEVSLAARRDADAGQAVITVSDTGPGI-PEEIRS 417

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D    +  +     +    V  +  ++  ++  +       V +  L 
Sbjct: 418 RVFDPFYTTKEEGKGTGLGLSIVYGIVEKHAGKITVDSAPGKGAVFTIRLP 468


>gi|304310075|ref|YP_003809673.1| Two-component sensor [gamma proteobacterium HdN1]
 gi|301795808|emb|CBL44007.1| Two-component sensor [gamma proteobacterium HdN1]
          Length = 973

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 74/233 (31%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRL 55
           M         S  L ++  L + + H+I +P+  I    + L E   + E +     I  
Sbjct: 731 MRLLEQKLTHSERLASIGRLAAGVAHEIGNPVTGIACLAQNLREESEDHETLWAADQIID 790

Query: 56  SSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +      +  +                     +    D+  + ++      +       
Sbjct: 791 QTKRISRIVHSLVSFSHSGPRQTEFEPVHLQVVVQEAIDLLYLNKENAEYRFQNDCDSAH 850

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +++ A++ +NL   A  +   G  + I  Q S++  I  ++ +G+    PE   +
Sbjct: 851 WVTGDAQKLAQVFINLLGNARDASAPGTTIRIYSQISEHSVITHVEDHGSGI-PPELVER 909

Query: 167 IVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEI---IDDHNVVLSALLE 214
           I +  V +        +    V  +  E+  ++        +     ++  L 
Sbjct: 910 IFEPFVTTKEPGKGTGLGMALVYTMVEEHFGQISIASPIHENGTGTRVTVTLP 962


>gi|258626034|ref|ZP_05720890.1| Osmolarity sensor protein envZ [Vibrio mimicus VM603]
 gi|258581685|gb|EEW06578.1| Osmolarity sensor protein envZ [Vibrio mimicus VM603]
          Length = 438

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 64/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +                  + L NL +
Sbjct: 280 YLKPVNREAFEAVDINEIANDVASSEGGYEVQIETDLQVGLTPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K      ++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432


>gi|228916268|ref|ZP_04079838.1| hypothetical protein bthur0012_34840 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228928689|ref|ZP_04091725.1| hypothetical protein bthur0010_33830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228947254|ref|ZP_04109548.1| hypothetical protein bthur0007_33840 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123156|ref|ZP_04252362.1| hypothetical protein bcere0016_34460 [Bacillus cereus 95/8201]
 gi|228660249|gb|EEL15883.1| hypothetical protein bcere0016_34460 [Bacillus cereus 95/8201]
 gi|228812501|gb|EEM58828.1| hypothetical protein bthur0007_33840 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228831008|gb|EEM76609.1| hypothetical protein bthur0010_33830 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228843466|gb|EEM88544.1| hypothetical protein bthur0012_34840 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 516

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 340

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 400

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +       +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506


>gi|153007294|ref|YP_001381619.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152030867|gb|ABS28635.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 661

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 74/231 (32%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIE 46
           + +++      +  L  +  L + + H++ +P+ A++   ++L            +V   
Sbjct: 423 LVRSLQAAAEHAERLAGIGRLVAGVVHELNNPLTAVNMYSDVLVEKLQNAGHDPADVEKL 482

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVS 103
             + +  +     A   + + + +   T  ++    L +  ++ +  +     V   + +
Sbjct: 483 RAIREGGQRIQRLARDLVTYAKPSGARTEPLELASVLEEAARLAKPALKEPSAVLERRFA 542

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                         + +NL   A  ++  GG+V++ +    +     ++ +G+       
Sbjct: 543 PAPTVEGNRPSLVHVFVNLLRNAAQAVGEGGRVSLVLAQEGDAVKVEVRDDGSGMPPAVA 602

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +    V  +   +   +  E  +     ++  L 
Sbjct: 603 ARAFEPFFTTRPGVGIGLGLPIVQGIVERHGGTVSLESAEGRGTTVTVRLP 653


>gi|146309325|ref|YP_001189790.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
 gi|145577526|gb|ABP87058.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
            mendocina ymp]
          Length = 1291

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 58/219 (26%), Gaps = 22/219 (10%)

Query: 18   LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S + H++ +P+ AI  SL L++            +++ +   +S      +  +    
Sbjct: 1068 FVSTVSHELRTPLTAIAGSLGLINGGALGAVPDNMRQMLAIAHSNSQRLSALINDLLDMD 1127

Query: 68   -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                               L       Q   +   V+ R+QV    +    ++  A+++ 
Sbjct: 1128 KLVAGKMHFDLQARTLQPLLEQALLHNQPYAEQHQVELRLQVEDDAQVRVDAQRLAQVMA 1187

Query: 121  NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NVEST 175
            NL   A    P G  V + +Q        S+  +G       K                 
Sbjct: 1188 NLLSNAAKFSPPGTCVDVRLQHGGEVLRVSVTDSGPGIPEAFKPRIFSKFSQADSGDTRQ 1247

Query: 176  IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +       +  +            L 
Sbjct: 1248 QGGTGLGLAICKEIIERMGGHIGFDSSPGQGATFWFELP 1286


>gi|42780529|ref|NP_977776.1| sporulation kinase B [Bacillus cereus ATCC 10987]
 gi|42736449|gb|AAS40384.1| sporulation kinase B [Bacillus cereus ATCC 10987]
          Length = 402

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++                 + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQQLQIEEELLHALSLITPLANLTNVRIHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+F     ++P GG + +++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNIFKNCIEAMPTGGDLVLTLVPEHKHIQLYIKDTGIGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|217978820|ref|YP_002362967.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217504196|gb|ACK51605.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 666

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 61/222 (27%), Gaps = 22/222 (9%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAII------ 62
           L+    + I H++  P+ AI    +     L  E     EV   +     +         
Sbjct: 440 LLGQFAASIAHEVNQPLAAITTYAQSGRRWLTREAPAAQEVRDCLDHIVENGRRASEVVA 499

Query: 63  -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAK 117
                 +        +     + +   ++   +A      ++   +     +    +  +
Sbjct: 500 GLKALTKKGAAPKNPLPLAEAIEEAVALMRRELATGAINLRQSFAADLPPVLGDRVQIQQ 559

Query: 118 ILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +++NL M    ++         +      +       S++ +G+     +    + +   
Sbjct: 560 VVINLAMNGAQAMAAIDPRRRDLCVATQREGAGFARISVRDSGDGI-KEQNPDAVFEPFF 618

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +   +  R+  E  DD        L 
Sbjct: 619 TTKTSGTGMGLSICRSIVEAHGGRIWAENNDDGGATFHFTLP 660


>gi|170739551|ref|YP_001768206.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168193825|gb|ACA15772.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 628

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54
           + +     + +  L AL  + + I H++  P+ A+    +    LL+   ++     L +
Sbjct: 387 LREAQAGLVHAEKLAALGQMSAGIAHELNQPLTAVRTLSDNAKVLLERNRLQAATANLSK 446

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SW 104
           +S +S  +             S      +   + +    + VD+ +++          S 
Sbjct: 447 ISELSEHMGQIVAHWKRVARKSEPITGIVSARQSISNALLIVDRSMKLKEINIVTKIPSE 506

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE 162
                       ++++NLF  A  ++       I V     ++     +  NG       
Sbjct: 507 DVILKCDPNRLEQVIINLFSNAVDAVANVHHPEIVVSVSRHQDRGAICVHDNGPGISDS- 565

Query: 163 KFTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +    +      +         +       +      +        L 
Sbjct: 566 VMPHLFEPFFTTKEAGSGLGLGLAISADIVAAMGGTIHAHDRPEGGAEFILDLP 619


>gi|328883820|emb|CCA57059.1| Two-component system, sensor protein [Streptomyces venezuelae ATCC
           10712]
          Length = 519

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSS 57
             +     S   V    +   H++ +P+ +I    EL    G E        +  I   +
Sbjct: 270 SALDARQQSETRVRQFVADASHELRTPLASIRGYAELTRRGGEECGPDTRHALGRIESEA 329

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGE 107
                 ++ + L               D+  ++ D                 +       
Sbjct: 330 TRMTGLVEDLLLLARLDAGRPLSYEPTDLLPLVVDAVSDARAAGPGHHWSLELPEDGAPP 389

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164
                    ++L+NL   A    P G KVT  V+      I  ++ +G        P  F
Sbjct: 390 VRADGARIQQVLVNLLANARTHTPPGTKVTARVRTDGAGVIVQIEDDGPGIPPELLPAVF 449

Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+        S  +    V  +   +   +  E       V +  L 
Sbjct: 450 ERFARGDASRSRNAGSTGLGLAIVRAVVGAHGGDVDVESAPGR-TVFTVRLP 500


>gi|324325573|gb|ADY20833.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 423

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 57/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----------I 109
              +                  +    +     +   +    + +               
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISINYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PSAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|288555371|ref|YP_003427306.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           pseudofirmus OF4]
 gi|288546531|gb|ADC50414.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           pseudofirmus OF4]
          Length = 722

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 61/226 (26%), Gaps = 15/226 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        + LV  L +   H+I +P+  I   +++  +             ++     
Sbjct: 490 EQELIRSEKLQLVGQLAAGFAHEIRNPLTTIRGFMQIFHQSDATKDEHKVHYDVMIKEID 549

Query: 59  SAIIRLKFMRLAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +  +                  + L  +  + +   +   +  R+QV        
Sbjct: 550 RVNSIIGELLQMANPKSGTSKTETNIGEVLTDIHTLYEPEANEQGIKMRLQVEPLPTVYL 609

Query: 111 LSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++++NL      ++   G +  +      +      ++  G     P+   ++ 
Sbjct: 610 DRSKLHQVVMNLVKNGLEAIDGSGSLALSAYENTEREIIEIKVEDTGIGMN-PQTMEKLG 668

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +       +  E   +LL    +         L 
Sbjct: 669 TPFFTTKETGTGLGLMTSFRIVEEIGGKLLVTSKEGVGTTFMIQLP 714


>gi|262045482|ref|ZP_06018504.1| sensory box sensor histidine kinase/response regulator [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259037175|gb|EEW38424.1| sensory box sensor histidine kinase/response regulator [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 360

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 66/221 (29%), Gaps = 18/221 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS----AIIRLKFM 67
           M  V  L   + HD  + +  I  SLEL++    +   +     ++          L F 
Sbjct: 1   MKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAERGVLLTQRLLAFS 60

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM--- 124
           R    +  +V     L ++ +++   +     +++           +  ++   L     
Sbjct: 61  RKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWIDVGQLENALINLVM 120

Query: 125 VAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            A  ++              +VT S    ++     +  +G+         ++ +    +
Sbjct: 121 NARDAMAGRGGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGMSQV-VKARVFEPFFTT 179

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V     ++  R+  E        +   L +
Sbjct: 180 KATGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 220


>gi|206978279|ref|ZP_03239157.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217959034|ref|YP_002337582.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|229138250|ref|ZP_04266846.1| hypothetical protein bcere0013_13720 [Bacillus cereus BDRD-ST26]
 gi|206743528|gb|EDZ54957.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217067887|gb|ACJ82137.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|228645282|gb|EEL01518.1| hypothetical protein bcere0013_13720 [Bacillus cereus BDRD-ST26]
          Length = 423

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 57/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----------I 109
              +                  +    +     +   +    + +               
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISINYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PSAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLAVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|153005300|ref|YP_001379625.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028873|gb|ABS26641.1| response regulator receiver sensor signal transduction histidine
           kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 375

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            +++      +  L A+  + + + H+I +P+ A    L +L+      E   +  +++ 
Sbjct: 133 KRDLSRRAQMAEKLAAVGTMTAGLSHEIRNPLNAAALQLSVLERRVQRLEKSAQGALLEP 192

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQV 102
           + L           +     +    +           +  + D+     +  AV     +
Sbjct: 193 LTLVRDEIRRLDHILEDFLQFARPREFVAKPVEVGVLVNRVLDLLGAQAERRAVRLERDL 252

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------LPRGGKVTISVQDSKNENIFSLKI 153
                         ++L+N  + A  +           R         D   +    +  
Sbjct: 253 ETVAAVAGDEERLRQVLVNFGLNALEAVKDGGLVRVSCREAPPASGRPDGPRQVAIVIDD 312

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G      E   +I +    +      +    V  +  ++   +      +     +  L
Sbjct: 313 DGPGV-PAESRDRIFEPFFTTKAKGSGLGLSIVHAIVTQHGGTITVSESPEGGARFTLEL 371

Query: 214 E 214
            
Sbjct: 372 P 372


>gi|56420003|ref|YP_147321.1| hypothetical protein GK1468 [Geobacillus kaustophilus HTA426]
 gi|56379845|dbj|BAD75753.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 542

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 80/238 (33%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQ 51
           M + +       +      + L SR+ H+I +P+  +    +LL+          + V +
Sbjct: 153 MEQEMLRAKEEAEKANQAKSNLISRMSHEIRTPLNGVLGFAQLLEMDPSLKGRQREFVQE 212

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------------AVDKR 99
           ++  +     +  + + LA   TG +     +   + +I++ I             +  R
Sbjct: 213 ILGGARHLLNLINEMLDLARIETGRLPLTYDVVHPDDIIKESIKLVEPLANKKNIDIQAR 272

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
              S        +    ++LLNL   A      GG V I  +  + + +  +K NG    
Sbjct: 273 SSFSEQVYLYTDATRVRQVLLNLLDNAIKYNRDGGTVLIEGKYDQEKVVIHVKDNGIGI- 331

Query: 160 FPEKFTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+   I +       + +D + I   +V  +       +  +         S  L 
Sbjct: 332 PDEEQENIFEPFYRIKGTHVDGNGIGLAFVKQIIRLLGGTIEVKSKLGVGSDFSFSLP 389


>gi|320156972|ref|YP_004189351.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus MO6-24/O]
 gi|319932284|gb|ADV87148.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus MO6-24/O]
          Length = 595

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L     + + I H++ +P+ AI +  +   L  E      V + +  
Sbjct: 357 LRLTQDELIQAAKLAVIGQMSASISHELNNPLAAIRSFADNGRLFLEKEKYPRVDENLSR 416

Query: 56  SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S       K  +    +                + L   E +     +   ++   +  
Sbjct: 417 ISALTERMAKISQQLRSFARKSAGDELVEARLMPVLLSANELMKPSLKSARVQLGTDFPE 476

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160
             I L     ++   L      A  ++       + +      + +    +  NG     
Sbjct: 477 HDIHLVINTIQLEQVLINLITNAIEAMENTEAKQLRITVDRALEQQICVHIDDNGPGI-D 535

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P KF Q+ +    +  +   +       +      +L            + +L 
Sbjct: 536 PAKFAQLCEPFHTTKKNGLGLGLSISQQILAGMNGKLQVSHSPLGGARFTIMLP 589


>gi|310639570|ref|YP_003944328.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309244520|gb|ADO54087.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 717

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 68/221 (30%), Gaps = 12/221 (5%)

Query: 5   ICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIR 54
                 S  L  V  L + + H+I +P+  +   L+L        +    I    +  I 
Sbjct: 493 EELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQQNQVLNMKHNDIMMSELDRIN 552

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSR 113
           L     +I  K   + F        +  +  +       + +   +QV            
Sbjct: 553 LIVSEFLILAKPQAVHFQKKDVRYIVSDVISLLDSQAHLLGIVFNLQVTDEPALVYAEEN 612

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  ++ +NL   +  ++ +GG +TI +          ++  G      E  +++ +  V 
Sbjct: 613 QLKQVFINLLKNSMEAMSKGGIITIHLFLEGESVKIFIRDQGTGI-PAEMLSKLGEPFVT 671

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +   +K  L  E  +         L 
Sbjct: 672 NKETGTGLGLMVSQRIIQSHKGTLDIESTEGEGTTALVQLP 712


>gi|325981529|ref|YP_004293931.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
 gi|325531048|gb|ADZ25769.1| multi-sensor signal transduction histidine kinase [Nitrosomonas sp.
           AL212]
          Length = 683

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 62/226 (27%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +    +   S + H++ +P+ AI    +LL+  G++D  +  ++    + +  L  +  
Sbjct: 432 RANKAKSEFLSSMSHELRTPMNAILGFSQLLELEGLDDRHLTYVKGIKSAGVHLLALIDE 491

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRER 115
                      I L      I   +     +                             
Sbjct: 492 VLDLAKIESGRIDLQPEWIDICTVVEECINLVKIQADGQDIKLTHSGMADKVLYTDRIRF 551

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFTQIVDGNVE 173
            +I+LNL   A     +GG V I +++S N       +  +G           +      
Sbjct: 552 KQIILNLIHNAIKYNRKGGWVHIELKNSDNPGYLKIIVIDSGIGIAANRLTQ-LFQPFNR 610

Query: 174 -----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                S I+   I       +      R+  E            L 
Sbjct: 611 LDAAGSAIEGTGIGLSLTRRIIEMMGGRIGVESELGVGSTFWFELP 656


>gi|229179925|ref|ZP_04307271.1| hypothetical protein bcere0005_32720 [Bacillus cereus 172560W]
 gi|228603606|gb|EEK61081.1| hypothetical protein bcere0005_32720 [Bacillus cereus 172560W]
          Length = 510

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 61/227 (26%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTTIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++  GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMQNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500


>gi|169832051|ref|YP_001718033.1| histidine kinase [Candidatus Desulforudis audaxviator MP104C]
 gi|169638895|gb|ACA60401.1| histidine kinase [Candidatus Desulforudis audaxviator MP104C]
          Length = 772

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLS 56
            + I  N  +  + +L  L S I HD  + +  I  +L+L  E   +      ++    +
Sbjct: 381 RRWIQENSRAEKMRSLGILTSGIAHDFNNLLAVIIGNLQLAREKTTDRFLQANLEQAYTA 440

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +  A   ++ ++  +        L+ + ++ +                 G  I++ ++  
Sbjct: 441 ARDASALVRRVQEFYRPAAREFRLVSVSELVRDAVTLTRNRWHNAALAEGVHIEIVQDLR 500

Query: 117 KILL-------------NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPE 162
                            N+ + A  ++   G  VTI   D+ +    S+  +G       
Sbjct: 501 SAAFVSGAASALRDALVNILINAFDAVNGRGGTVTIRTWDTGSSINVSVSDDGCGIPPEA 560

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       +   +   +  +           +L 
Sbjct: 561 LPYVFDPFFTTKGERGSGLGLGITHNIITAHGGSIGVQSTPGQGTTFDIVLP 612


>gi|160885058|ref|ZP_02066061.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
 gi|156109408|gb|EDO11153.1| hypothetical protein BACOVA_03055 [Bacteroides ovatus ATCC 8483]
          Length = 570

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     LL   DE  +    M L++ ++
Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRYVYMSLVQENN 395

Query: 58  MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +   + ++    G +D ++       L             D  V++ +      
Sbjct: 396 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDTAVELRFDENSPQ 455

Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  +       ++L N    A     +G        + +++  F +   G      +K  
Sbjct: 456 IVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCVTDTGKGIPDEQKHE 515

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +S +    +       L +    ++  E  +         
Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVNRMGGKIGVESREGEGSCFWFT 563


>gi|197118785|ref|YP_002139212.1| response receiver sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088145|gb|ACH39416.1| response receiver sensor histidine kinase response regulator, PAS
           and PAS domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 773

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 70/243 (28%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           +A +    +  M+ +  L   I HD  + +  I+    LL    D+     +  + I  +
Sbjct: 378 LAIDQLRQVQKMEAIGQLAGGIAHDFNNLLTVINGYSTLLVRSLDKGSPTHKEAEQILRA 437

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKI 109
              A    + +            ++ +    + ++  +       +          G   
Sbjct: 438 GERAADLTRQLLSFSRRQIMEPRVLDINKQVRAVQKMLERLIGEHIGLVTTLSEDAGFIR 497

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154
               +  +I++NL + A  +   GG +T++ +                  +    S+   
Sbjct: 498 MDPGQMEQIVMNLIVNARDASETGGVITMATEKVDLDQNFSHLHPGSVPGSYVRLSVADQ 557

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E   ++ +    +        +    V  +  ++   +            +  
Sbjct: 558 GQGM-TEEVKQRLFEPFFTTKEMGRGTGLGLATVYGIVKQSGGYIEVVSEPGQGACFNIY 616

Query: 213 LEK 215
           L +
Sbjct: 617 LPR 619


>gi|116623028|ref|YP_825184.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116226190|gb|ABJ84899.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 684

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + ++    + S  + ++  L   + HD  + +  I+   ++    L EV      +  IR
Sbjct: 307 LRESQERYMQSQKMESIGRLAGGVAHDFNNILTVINGYSDIVYHQLSEVDPRRAQVNEIR 366

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++      L F R   G    V+    + + E+++   +  D R+          
Sbjct: 367 KAGAHAAELTQQLLAFSRKQVGRPRPVNLNSVVSEAEKMLRRILGEDVRLITRLDPSTGL 426

Query: 111 LSRER---AKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLAR 159
           +  +     ++L+NL + A  ++P                 + S+     S+   G+   
Sbjct: 427 ILADPGYVHQMLMNLAVNARDAMPDGGSLVIETSDAQRHDEEGSRIAVCLSVTDTGSGMD 486

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +                 +    V  +  +++  +               L +
Sbjct: 487 EETRKNIFEPFFTTKGTKGTGLGLATVYGIVQQSQGSIEVLTEPGKGSTFRVYLPR 542


>gi|46200837|ref|ZP_00207864.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 794

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 70/245 (28%), Gaps = 32/245 (13%)

Query: 2   AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            +N+      S  + A+  L   + HD  + + A+    +LL +           +  ++
Sbjct: 405 QRNLEMQFAQSQKMQAMGQLAGGVAHDFNNLLTAMIGFCDLLLQRHGAGDPSFADIMQVK 464

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108
            ++  A   ++ +            L+ + D    + + +       +            
Sbjct: 465 QNANRAASLVRQLLAFSRRQALQPRLLNVTDALAELSNLLRRLLGETIELRMVHGRALGL 524

Query: 109 -IDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152
                 +  ++++NL + A  ++P               +  +    +  + +     + 
Sbjct: 525 VRVDPGQFDQVIINLAVNARDAMPGGGALTIRTNTVHVDQPVQRGPELMPAGDYVQIEVA 584

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      E   +I +    +        +    V  +  +    +  E       + S
Sbjct: 585 DTGTGI-GKENLARIFEPFFSTKEVGAGTGLGLSTVYGIVRQTDGFIFVESEPGQGTIFS 643

Query: 211 ALLEK 215
             L +
Sbjct: 644 IYLPR 648


>gi|321311783|ref|YP_004204070.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018057|gb|ADV93043.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 589

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +          E+ Q+I  
Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410

Query: 56  SSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S+     +  +                    +      +     V ++           
Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALHHDISL 470

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E +    +  ++  NL   A      GG V+ISV   K+     +K +G+     + 
Sbjct: 471 TEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +   +      D     +  + 
Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIP 586


>gi|312883424|ref|ZP_07743150.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309369040|gb|EFP96566.1| sensor protein TorS [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 963

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +      L  + + H+I +P+  +  + +LL + G++ +    + + + S  
Sbjct: 459 ARKEAEQANRAKSAFL--ATMSHEIRTPMNGVLGTAQLLKDDGLDSKQRHYVDVINRSGT 516

Query: 62  IRLKFMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+               +  + +   + +              ++    
Sbjct: 517 TLLAILNDVLDYSKIEAGFIDIRPINFDIHSMIKDTCELVGARAQEKNLKLDYFIESDVE 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                 +   A++L NL   A                 D +   +F +   G      E+
Sbjct: 577 QYWHGDATRLAQVLNNLVGNAVKFTDAGHVDLYVALNPDYEGYILFEVTDTGCGIDEVEQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T        S          +       +       +  +            + 
Sbjct: 637 STLFEPFTQASNGISSKGGTGLGLAISKRIVEAMGGEMFFDSTLGVGSRFGFTIP 691


>gi|294338507|emb|CAZ86835.1| Sensor protein kdpD [Thiomonas sp. 3As]
          Length = 914

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 79/236 (33%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51
           A++    + +  +   L S + HD+ +P+ A+  + E+L          D   +  + + 
Sbjct: 657 AQDTLLAMQAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLVAHPPGDAATLHSQALS 716

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSW 104
           L++ S   A +    + +A   +G V        +E+++   +            +Q+  
Sbjct: 717 LLQQSRRLARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQIDL 776

Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-- 159
             +   +  +     ++L+NL   A    P G  + +  +    E   ++   G      
Sbjct: 777 PADFPLVRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPAG 836

Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F     G+ ES I    +       +   +  R+      +     +  L 
Sbjct: 837 RERAVFETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLP 892


>gi|293370018|ref|ZP_06616585.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634936|gb|EFF53458.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 570

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     LL   DE  +    M L++ ++
Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 395

Query: 58  MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +   + ++    G +D ++       L             D  V++ +      
Sbjct: 396 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDTAVELRFDENSPQ 455

Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  +       ++L N    A     +G        + +++  F +   G      +K  
Sbjct: 456 IVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCVTDTGKGIPDEQKHE 515

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +S +    +       L +    ++  E  +         
Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVNRMGGKIGVESREGEGSCFWFT 563


>gi|197106737|ref|YP_002132114.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196480157|gb|ACG79685.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 643

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 57/235 (24%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        ++  L     + + H+I +P+  +    E++    +     + + +   S 
Sbjct: 241 LESARDAANAANVLKTQFLANMSHEIRTPLNGVLAMAEVMALGELAPLQRERLDVIRRSG 300

Query: 61  IIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAV---------DKRVQVSW 104
            + L  +      +         +D    L      + D   +         +  V    
Sbjct: 301 GLLLAVLNDVLDLSKIEAGKLTLLDEDFELEPELDQVRDNFRIVALGKGLGFEVTVAEEA 360

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
            G     +    +I+ NL   A     +GG                +   G        P
Sbjct: 361 QGWWRGDADRLRQIVGNLLSNAVKFTMQGGVRAHVDLTPAGALRIVVSDTGVGIAPEKLP 420

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +       L       +  E  +      +  L 
Sbjct: 421 TLFEKFTQADNSATRRFGGTGLGLAICRELTQMMGGSIDVESREGDGSTFTVELP 475


>gi|167629027|ref|YP_001679526.1| sensor histidine kinase domain protein [Heliobacterium
           modesticaldum Ice1]
 gi|167591767|gb|ABZ83515.1| sensor histidine kinase domain protein [Heliobacterium
           modesticaldum Ice1]
          Length = 659

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 66/217 (30%), Gaps = 12/217 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII----- 62
            L  ++LVA + + I H+I +P+  +   L++L          +   L            
Sbjct: 424 RLDRLNLVAQMAAGIGHEIRNPMTTVRGFLQILRAKDELANHWEHFDLMIEELDRANAII 483

Query: 63  -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                  K              +  L  + +          R+++    E     +E  +
Sbjct: 484 SEFLSLAKHKVDDLRLQNLNAIIRALYPLLEADASLGKKAIRLELGPIPETYLGEKEIRQ 543

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           ++LNL      ++  GG++ I      +  + ++   G+    P+   Q+      +   
Sbjct: 544 LVLNLVRNGLEAMGEGGELIIRSYREGDAVVLAVCDQGSGI-SPDALAQLGTPFFTTKEQ 602

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   ++ R+  E   +          
Sbjct: 603 GTGLGLAVCQNIVVRHRARMTVE-TGEQGTTFFVHFP 638


>gi|220925301|ref|YP_002500603.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
 gi|219949908|gb|ACL60300.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
          Length = 641

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            K +   L  +  + AL  L   + HD  + + AI  SLEL             +     
Sbjct: 261 QKQLEARLRQADKMQALGTLAGGVAHDFNNLLTAIMGSLELALPKVAGDARLSRLMTNAA 320

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q  +  +      L F R        VD    +  ++ ++   +    +V    + +   
Sbjct: 321 QAAQRGAALTKRLLSFSRQRELQARVVDLNGVIRGMDDLLGRSLGGFVQVDHDLSPDLWP 380

Query: 111 LSRERAKI---LLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKING 155
              +  ++   +LNL +    ++P                         +  + ++   G
Sbjct: 381 ARVDPEQLELAILNLCINGRDAMPEGGVVTISTRNVSVTGSPDPDLPDGDYAVIAIADTG 440

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE  +++ +    +        +    V  L  ++   +  +        +   L
Sbjct: 441 TGI-PPEILSRVFEPFFTTKAQGQGTGLGLAMVFSLLQQSGGTIRIDSEVGRGTRVELYL 499

Query: 214 EK 215
            +
Sbjct: 500 PR 501


>gi|150398898|ref|YP_001322665.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
 gi|150011601|gb|ABR54053.1| PAS/PAC sensor signal transduction histidine kinase [Methanococcus
           vannielii SB]
          Length = 421

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 76/237 (32%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54
           + K+         L +   + I H+I +PI +I    ELL++  +      +   +  I 
Sbjct: 184 LKKSYDELKELDRLKSEFTAIISHEIRTPITSIKGYTELLNDESMGKLNNNQKMCLNTIL 243

Query: 55  LSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
            + +     +  +                 VD    L  +  ++    +    ++ +   
Sbjct: 244 ENVIRLGRLVSDVLDISRIERNTFTLNIQKVDVKDVLEHVLSELAPIALKKHIKLSLEIP 303

Query: 106 GEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPE- 162
              ID  ++R  ++  N+   A    P   KV I+ ++   ++ + S+K NG      E 
Sbjct: 304 NITIDADKDRLNQVFTNITENAIKFSPENEKVEITGKEGLNSDILISIKDNGIGISKNEF 363

Query: 163 --KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +    +           +       +   +  ++  E   +        L K
Sbjct: 364 EKIFDRFYQIDSSNRRKKGGAGLGLPISKGIIKAHNGKIWVESELNQGSTFYISLPK 420


>gi|197117813|ref|YP_002138240.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197087173|gb|ACH38444.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 653

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 70/230 (30%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIR 54
           +       L +  + A+  L   + H+I +P+ AI  +++++ +         E   +  
Sbjct: 413 LEATFDELLVAKKVAAVGHLALGLAHEIRNPLSAIQMNMQMIRKKIEPTGVLCENFSIAD 472

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    LK +                 + +  L  +         V     +    E
Sbjct: 473 GEIQRLNRLLKDVLDFARPRPLRLQTVDLAEIVRRLLQLVDQRLAQYGVTPTTDIESPLE 532

Query: 108 KIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +    +  ++LLNL + A  ++        + +     +++    +  +G     P+K 
Sbjct: 533 LVCDPEQIHQVLLNLVLNAMEAMDGVAGDRTLKVIAYRKESQAYVLVSDSGRGI-GPDKC 591

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Q+ D    + +    +    +  +   +   +            + +L 
Sbjct: 592 EQLFDPFYTTKVSGGGLGLSILQTIVLSHGGSVSVTGGTGAGATFTVVLP 641


>gi|150392090|ref|YP_001322139.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951952|gb|ABR50480.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 790

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 67/244 (27%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDE----------VGIED 47
           MA+         +   L     S I H++ +P+  I  SL+L++                
Sbjct: 511 MAQKQQLIHEMQECDRLKTEFFSNISHELRTPLNVILGSLQLMNLYTNKEASMTYPNNLS 570

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---- 103
           + + ++R +S   +  +  +            +         I + I +     +     
Sbjct: 571 KHVGIMRQNSYRLLRLVNNLIDMTKIDSGFCEMQLQNHNIVSIVEEITLSVAAFIENRQI 630

Query: 104 --------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                             +  +I+LNL   +      GG++T+ +++ +   + S+K  G
Sbjct: 631 TLLFDTEVEERMIACDPDKIERIILNLLSNSVKFTNYGGQITVYIEEIEGNVVISIKDTG 690

Query: 156 NLARF---PEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                      F +    +       +   I       L       +            +
Sbjct: 691 IGIETEKLDMIFQRFRQADDLLTRRNEGSGIGLSLAKSLIELQGGTISVTSEYGRGSEFT 750

Query: 211 ALLE 214
               
Sbjct: 751 VTFP 754


>gi|327440461|dbj|BAK16826.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 938

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 65/219 (29%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           + + L S + H++ +P+ ++    ELL     +   + + ++ I   +      +     
Sbjct: 579 MKSELVSTVSHELRTPLSSVLGFTELLLAKEIKPERQKKYIETIHKEAKRLTNLINDFLD 638

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---------LSRERAKILL 120
                               + + +  + ++        +D               ++L 
Sbjct: 639 IQRIESGQQVYSMNKISLTALIEDVLKNFQIDPQHNIRFVDESTNAIVSADEERIIQLLF 698

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVE--ST 175
           NL   A    P GG++ I +Q+       S++  G           F +    +      
Sbjct: 699 NLIGNAIKFSPNGGEIIIRMQNINETVQVSIQDCGIGIPESAIPSLFQKFKRVDNSSRRK 758

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    +       +  ++K  +  E  +     +   L 
Sbjct: 759 IGGTGLGLALSKEIISKHKGDIWLESEEGIGTTIFFTLP 797


>gi|317496244|ref|ZP_07954604.1| hsp90-like protein [Gemella moribillum M424]
 gi|316913819|gb|EFV35305.1| hsp90-like protein [Gemella moribillum M424]
          Length = 647

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 62/227 (27%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64
                     S + H++ +P+  +++ +E L+     +  +  + +  I   +   I  +
Sbjct: 412 RQEKERREFVSTVSHELRTPLTTMNSYIEALEEGVINDKELAPQFIDTIHKETNRMIRMV 471

Query: 65  KFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
             +                 +D    +  I    E        ++ +          +  
Sbjct: 472 NELMQLGKMDIKEEHYEKEFIDINKLIEQISNRFELTHPEKNFIKHTSKTPIFVEGDQDK 531

Query: 117 --KILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
             ++  N+   A    P      + +    + N    S+K  G                 
Sbjct: 532 LTQVFDNIMNNAIKYSPNGKNITIRVRQNYNHNRVNISIKDEGVGIPLVHIDKIFNRFYR 591

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                + ++    +       +   +K R+  +  + +  ++   L 
Sbjct: 592 VDKSRQRSMGGTGLGLALAKNIIEAHKGRIWAQSREGYGTIIFVTLP 638


>gi|295107890|emb|CBL21843.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Ruminococcus obeum
           A2-162]
          Length = 226

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 60/226 (26%), Gaps = 14/226 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +   F     +  + L S   H+I +P+  I + L++L +   +  + +       + 
Sbjct: 1   MQEKNKFEQQKKEFQSTL-SMFSHEIRNPLALITSELQMLSDHHPQLCLDEHWDNIMENL 59

Query: 61  IIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               + +     Y  +                           +   ++         L 
Sbjct: 60  NYIRELLDEISRYQNAGHLSLVSTDTSLWLDRIANTFRPALDYLGIALETDIPKNLPHLE 119

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLKINGNLARFPEKFTQIV 168
            ++ KI   LF +   +          ++   +        ++  NG      E+  QI 
Sbjct: 120 LDQTKIRQALFNLLRNAQEAIQHAHGKIRIIASAVSDGIQITVHDNGCGM-TAEQLEQIF 178

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V        +       +   +   L  E +         LL 
Sbjct: 179 FPFVTYKPGGTGLGLAVTRQIIEAHHGTLRVESVPGEGTTFYILLP 224


>gi|255091520|ref|ZP_05320998.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255313248|ref|ZP_05354831.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255515938|ref|ZP_05383614.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
          Length = 389

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGIE 46
           K          L   L   I HD+ +P+ +I  S                +ELL  +  +
Sbjct: 146 KKANLEAERERLRGNLLRSISHDLRTPLTSILGSSSTILENDDVIDKETRVELLKNIYED 205

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +     + +S     +           VD +I    +           K        
Sbjct: 206 TSWLTHSVENILSMTRIDEGKLDIEKRPEVVDEIIAESILRVKKFANSRDIKTNIPDEII 265

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     ++L+NL   A    P+  K+ ++V+   N+ +F +  NG      +    
Sbjct: 266 IVHVDVLLIEQVLVNLIDNAIRHTPKNSKIELTVKKESNQVLFEVADNGKGIPNEDIGNI 325

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    N    ++     +       +   +   ++              + 
Sbjct: 326 FNRFYTKNKSRNLERRGIGLGLEICKSIVEAHGGEIVAFNNPSGGATFRFSIP 378


>gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1416

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 60/217 (27%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
            + + H++ SP+  I     LL     +   ++    +          +            
Sbjct: 1048 AVLSHELRSPLNPILGWARLLQTREFQPAEIKKAIATIERNAKLQAQLIEDLLDVSRILQ 1107

Query: 71   ------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLF 123
                        V  +    +  ++  +   +  +  +  +  ++    +R  +++ NL 
Sbjct: 1108 GKLNLKMFPVNLVLVIEAGLETVRLAAEAKDIQIQTMLDASLGQVLGDSDRLQQVIWNLL 1167

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDS 178
              A    P  GK+ I ++   ++   ++   G               +  DG        
Sbjct: 1168 SNAVKFTPEEGKINIQLERIDSQAQITVSDTGKGISPEFLPHVFEYFRQADGTTTRRFGG 1227

Query: 179  HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
              +    V  L   +   +  E   +    +    L 
Sbjct: 1228 LGLGLAIVRHLIELHGGTIWAESLGEGQGAIFRVRLP 1264



 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 57/237 (24%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
            +     L+ +D    +  S + H+  +P+  +   LE  L          +  +L  + 
Sbjct: 338 ERKRAEALAELDRAKTVFFSNVSHEFRTPLTLMLGPLEETLANCATLLPAHEREQLEMVQ 397

Query: 60  AIIR------LKFMRLAFGYTGSVDSLIGLGDIEQVI-----------EDFIAVDKRVQV 102
                        +  +    G V +     ++               E           
Sbjct: 398 RNGLRLLKLVNSLLDFSRIEAGRVQASYEPTNLATFTAELASVFRSAVERAGMELSVNCP 457

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           S             KI+LNL   A      G         +     F++K  G      E
Sbjct: 458 SLPAPVYVDREMWEKIVLNLLSNAFKFTMTGKIAVSLQWAND-HIEFAVKDTGIGIPAEE 516

Query: 163 KFT---QIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     G    T +   I    V  L   +   +    +       +  + 
Sbjct: 517 IPHLFKRFHRVKGAQGRTFEGSGIGLSLVQELVQMHGGTVKVTSVLGAGSCFTISIP 573


>gi|126698101|ref|YP_001086998.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|254974120|ref|ZP_05270592.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255099626|ref|ZP_05328603.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255305510|ref|ZP_05349682.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
 gi|255649030|ref|ZP_05395932.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260682221|ref|YP_003213506.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260685820|ref|YP_003216953.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|115249538|emb|CAJ67354.1| Two-component sensor histidine kinase [Clostridium difficile]
 gi|260208384|emb|CBA60898.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260211836|emb|CBE02241.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 535

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGIE 46
           K          L   L   I HD+ +P+ +I  S                +ELL  +  +
Sbjct: 292 KKANLEAERERLRGNLLRSISHDLRTPLTSILGSSSTILENDDVIDKETRVELLKNIYED 351

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +     + +S     +           VD +I    +           K        
Sbjct: 352 TSWLTHSVENILSMTRIDEGKLDIEKRPEVVDEIIAESILRVKKFANSRDIKTNIPDEII 411

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     ++L+NL   A    P+  K+ ++V+   N+ +F +  NG      +    
Sbjct: 412 IVHVDVLLIEQVLVNLIDNAIRHTPKNSKIELTVKKESNQVLFEVADNGKGIPNEDIGNI 471

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    N    ++     +       +   +   ++              + 
Sbjct: 472 FNRFYTKNKSRNLERRGIGLGLEICKSIVEAHGGEIVAFNNPSGGATFRFSIP 524


>gi|21244408|ref|NP_643990.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110069|gb|AAM38526.1| sensor histidine kinase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 631

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 235 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 294

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                           L   E   E    V +   
Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHV 354

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ + ++      + S+  +G+     
Sbjct: 355 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 414

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473


>gi|163846387|ref|YP_001634431.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524154|ref|YP_002568625.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667676|gb|ABY34042.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448033|gb|ACM52299.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 599

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 50/219 (22%), Gaps = 25/219 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFG 72
           S + H++ +P+ AI    E L E  +  ++  L                     +  A  
Sbjct: 366 SMMSHELRTPLTAILGYSEFLREDLLNRDLHSLTSDLDRIITAGRHLLTLINDILDYARL 425

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----------LSRERAKILLN 121
              +V        +  +I + +   + +                           ++LLN
Sbjct: 426 EANAVTIHPEPVHMSTLINEVVMTLQGLAKQGQNTITVTVEPDLPPVLADPVRLRQVLLN 485

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VEST 175
           L   A     +G       + +  E    +   G      +    +              
Sbjct: 486 LVGNACKFTGQGEIRVHCYRSTTAEIQIDVSDTGIGIAADQL-QHLFKPFVQVDNGPTRR 544

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       L       +L           S  L 
Sbjct: 545 YGGTGLGLAICQRLCQVMGGAILVTSEPGRGSTFSVRLP 583


>gi|329939380|ref|ZP_08288716.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329301609|gb|EGG45503.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 595

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 73/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           +A+     L +      + + + H++ SP+  I + LE   +     + +++ L+   + 
Sbjct: 364 LAERREL-LEAQR--TSMVNDVAHELRSPLTNIRSWLEAAQDGIAPTDRQLLDLLFDEAG 420

Query: 59  SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +    +  +R             +      D L  +   ++   +   V   + V     
Sbjct: 421 ALQHIIDDLRDLAAADTGELALHYEMVRVADILDQVVAGQRSRAEHAGVALEIHVDEDKH 480

Query: 108 KIDLSR-ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
           ++        +++ NL   A    P GG+++++ +   +E    ++  G+     +    
Sbjct: 481 EVCADPLRLRQVIGNLVGNAVRHTPSGGRISLTCRHLGDEVRIEVRDTGSGIAPEDLPHI 540

Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +                +       L   +   +            +  + +
Sbjct: 541 FDRFWRAEKSRNRRTGGSGLGLSIARKLTEAHGGTITVRSTLAEGTTFTVAVPR 594


>gi|317501464|ref|ZP_07959662.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|316897093|gb|EFV19166.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
          Length = 894

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 71/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +       S  L A L   I HD+ +P+ +I  S   L       D+   +     +  
Sbjct: 653 KEEAAVFAKSEQLRANLLRAISHDLRTPLTSISGSAGNLMANYNKMDDEMRKQTFADIYD 712

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEK 108
            S     +    + +       V+    +  +++V        +    +  ++V  + E 
Sbjct: 713 DSMWLINLVENLLAVTRIEGERVNLNQTIELMDEVIAEALKHINRKGKEYTIKVDSSEEL 772

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I    +     ++++NL   A    P G  + I  Q        S+  NG      E+ T
Sbjct: 773 ILAKIDVKLVVQVIINLVDNAIKYTPSGSIIHIHTQKQGKWVEVSISDNGPGI-PDEQKT 831

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           +  S  +       +   +   +          + +  L 
Sbjct: 832 KIFDMFYSGANKIADSRRSLGLGLSLCKSIVTAHGGMISVSDNQPKGTIFTFTLP 886


>gi|312792509|ref|YP_004025432.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312179649|gb|ADQ39819.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 458

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 73/237 (30%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50
           +AK     +  + +         S   H++ +P+  I+  + L+D  G  D+ +      
Sbjct: 221 LAKTFNEMIERLKISFEKQNQFVSDASHELRTPLSVINGYINLIDRWGKNDKEVLQESIV 280

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQV 102
                ++  +      L   R   G       ++ L  + + I           +    +
Sbjct: 281 AIKNEVKYMTELVERLLFLARGDSGVIKLQKEVVNLNQLVEEIVKEGKLVAPNRNWSYNL 340

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +     R   ++L  +   +      GG + ISV+   ++    +K NG      E
Sbjct: 341 KGRIDIFADGRLMKQMLRAIIDNSIKFTQEGGTINISVEKHLDKVKIVVKDNGIGIPREE 400

Query: 163 K---FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +   +       +    V  +   +   +L E        +S LL 
Sbjct: 401 IGKIFDRFYRVDKVRSKTTGGSGLGLSIVKWIVEAHNGEILVESELGKGTEVSVLLP 457


>gi|251787895|ref|YP_003002616.1| osmolarity sensor protein [Dickeya zeae Ech1591]
 gi|247536516|gb|ACT05137.1| histidine kinase [Dickeya zeae Ech1591]
          Length = 470

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSQEDEYLAESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++                   D    LG++      +                     
Sbjct: 277 CNAIIEQFIDYLRTGQEMQMEVADLNAILGEVVASESGYEREIDSELARGELLMKVSPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171
             + + NL + A        +V+   +       F ++ +G           F   V G+
Sbjct: 337 IKRAVANLVVNAARYGNGWIRVSSGRELQ--RAWFQVEDDGPGIDPSQLAHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A L 
Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHNGSLDVGSSERGGLRVRAYLP 437


>gi|229071148|ref|ZP_04204374.1| hypothetical protein bcere0025_33220 [Bacillus cereus F65185]
 gi|228712088|gb|EEL64037.1| hypothetical protein bcere0025_33220 [Bacillus cereus F65185]
          Length = 510

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500


>gi|297567023|ref|YP_003685995.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296851472|gb|ADH64487.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 475

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 62/211 (29%), Gaps = 20/211 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM-------RLAF 71
            H++ +P+ AI   +  L         + E ++++R         +  +           
Sbjct: 258 SHELRTPVTAILGHVSYLLRRTPLTEQQRESLEIVRREGERMKKLVGDLLELSKTGGTWR 317

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKILLNLFMVAHAS 129
                V     L +I +          R+Q+        +       ++  N+   A  +
Sbjct: 318 VELSPVHLHTLLAEIAEEYGQSFPQGGRIQLEVPEDLWVLGDVERLHQVFANMVSNAQKA 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID--SHDIQFY 184
             +  ++ +  +D +   +  ++ NG        P  F +    +     +     +   
Sbjct: 378 --QASEIRLVARDLQERVVIRVEDNGEGIPPEHLPHLFERFYRVDKARDRERGGSGLGLS 435

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  +   +   +  E       V S  L +
Sbjct: 436 IVKAIVEAHGGSVWVESEVGRGSVFSVSLRR 466


>gi|220933265|ref|YP_002512164.1| PAS/PAC sensor signal transduction histidine kinase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994575|gb|ACL71177.1| PAS/PAC sensor signal transduction histidine kinase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 505

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 20/223 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSA 60
              LVA+  L + + H++ +P+G+I    +LL +   + +  +          +  S   
Sbjct: 277 REKLVAMGQLAAGVAHELNTPLGSILGYSQLLIDSCEDPQRARHFARTISEQTKRCSRII 336

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLSRERA 116
              L + R         D    + ++   +         + +      +        E  
Sbjct: 337 HNLLNYARKEKCQGEFCDVNALVDEVVDTLISCRLKRYEISLERDLKDSPIVDGGCGELD 396

Query: 117 KILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            +L NL + A  +L    K  I V    +        ++ NG      E  ++I +    
Sbjct: 397 IVLTNLLINAVQALKGVEKPMIRVSTGLNEGGFAYIIVEDNGPGI-PGELRSRIFEPFFS 455

Query: 174 ST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +   +       +       L  +            L 
Sbjct: 456 TKDVGEGSGLGLSISHAMVSRRGGTLRYDSDYRDGARFVIRLP 498


>gi|163847652|ref|YP_001635696.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525511|ref|YP_002569982.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668941|gb|ABY35307.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449390|gb|ACM53656.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 876

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 55/247 (22%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRL 55
            + +   L    L     +   + I H++ +P+ AI     +L +   +      +    
Sbjct: 612 TEELRVALERAQLADRRKSDFLASISHELRTPLNAIIGFSTVLLDDTDQPLTPTQREDIQ 671

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           S       L  +         +++     +I  V    I  +    V        ++   
Sbjct: 672 SINRNGRFLLHLINELLDLARIEAGHLNLEISNVNLYNITSEVCDTVQTLLRNRPVTLRN 731

Query: 116 ----------------AKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSL 151
                            +IL NL   A     R                         S+
Sbjct: 732 AVPVTLPDIAADGDRLRQILFNLLSNAIKFTERGTITVSARVHDEVNEDGKVGRYVAVSV 791

Query: 152 KINGNLARFPEKFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
              G       +     +        S +    +       L      R+  +       
Sbjct: 792 SDTGIGIPLERQHEIFNEFVQIHGRRSRLSGTGLGLAITRKLVLAQGGRIWVDSTPGIGS 851

Query: 208 VLSALLE 214
             +  + 
Sbjct: 852 TFTFTIP 858


>gi|332974890|gb|EGK11803.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 463

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 66/236 (27%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  N    L +  +     S + H+I SP+ +I    + L    + +E  +       + 
Sbjct: 228 MMANSLERLEA--MRQEFVSNVSHEIQSPLASIQGFSQTLRTESLPEEEREQYLSIIENE 285

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             RL  +        S+D      D  +        +    + W     +L+ +      
Sbjct: 286 SRRLSSLSKQLLMLASLDKEETALDQTEFDVAAQIREVLRMLEWNWRDKELAIKTDLPPT 345

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE--- 162
                     ++  NL   A      GG +T+++ D +       ++  G      +   
Sbjct: 346 RIRADAKLLHQVWTNLLNNAIKFTEPGGTITVTIDDFEEGGIEVKVRDTGVGIPGEDLPH 405

Query: 163 KFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +             +    V  +   +   +  E        +   L 
Sbjct: 406 IFERFYKADKSRSRKGKESGSGLGLSVVKKVVDLHGGTISVESEPGAGTGIRVWLP 461


>gi|300689765|ref|YP_003750760.1| sensor histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [Ralstonia
           solanacearum PSI07]
 gi|299076825|emb|CBJ49437.1| sensor histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [Ralstonia
           solanacearum PSI07]
          Length = 937

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 63/234 (26%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55
           A++    + S  L   L + + HD+ +P+  +    E L         +Q      +   
Sbjct: 691 AQDALVRIESERLRNSLLAAVSHDLRTPLTGLAGMAETLLRTQPPLPPLQAEAAEAIGEQ 750

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----DKRVQVSWTGEKIDL 111
           +     +    + +A      V   +    IE+++   +         V V    +    
Sbjct: 751 AQRMRAMVTNLLDMARLQNRDVKLRLEWQSIEELVGAALKATPLPAHPVVVDDLADLPLQ 810

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGNLAR---F 160
             +   +   L  +   +       T               +E    ++ +G        
Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISAGVEHDAAHGDEMRVRVRDHGPGVPAGTE 870

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G+ ES      +       +   +  R+  E   D        L 
Sbjct: 871 RIIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPVDGGACFVVALP 924


>gi|294496206|ref|YP_003542699.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
 gi|292667205|gb|ADE37054.1| multi-sensor signal transduction histidine kinase [Methanohalophilus
            mahii DSM 5219]
          Length = 1108

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 28/239 (11%)

Query: 3    KNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLS 56
            K       +       +   + + H++ +P+ +I    ++L+      +  +  +     
Sbjct: 849  KANELAAQAEYANKSKSEFLANMSHELRTPLNSIIGFSDILNGETFGKLTQKQEKYTANI 908

Query: 57   SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            + S    L                M               +  I  +     ++D  +  
Sbjct: 909  NKSGKHLLYLINEILDLSKIEAGKMEFVCDDFKLNSVFSDIESIISLQAQKKSIDLEISK 968

Query: 103  SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFP 161
            S   E      +  +I+ NL   A       G+V++S +         ++K  G      
Sbjct: 969  SVDIEINADKSKIKQIIFNLLSNAIKFTDENGRVSMSARKVDRDRVEIAVKDTGIGI-PE 1027

Query: 162  EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +KF  I D  +              +    V     ++   +  E            + 
Sbjct: 1028 DKFETIFDPFMQVDASTSRKYGGTGLGLALVKKYVEKHGGEVWVESEIGKGSTFMFTIP 1086


>gi|290508496|ref|ZP_06547867.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
 gi|289777890|gb|EFD85887.1| two-component system, NarL family, capsular synthesis sensor
           histidine kinase RcsC [Klebsiella sp. 1_1_55]
          Length = 946

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +     +         +++ NL   A       G + + VQ + +    S++  G     
Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIILHVQCAGDYLQISVRDTGEGIPA 628

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  E         +  + 
Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687


>gi|317132921|ref|YP_004092235.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470900|gb|ADU27504.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 476

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIR--------LKF 66
           S + H++ +P+ AI    E +      +     + M++I   +                 
Sbjct: 260 SSVSHELRTPLTAIKGWAETIQGCAPGDTDTIHKGMRVITDETGRLSAMVEDLLDFSRMQ 319

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAKILLNL 122
                     +D L  +G+   +  D    +    +          +       ++ +N+
Sbjct: 320 SGRFRMAIDKIDILAEMGEAVLMFSDRAHREGLTFIYNEPASLPPMMGDRNRLRQVFVNI 379

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179
              A      GG V +   D  N     +   G      +      +   GN        
Sbjct: 380 LDNAFKYSDAGGVVKVDAIDCGNHVRIIVSDTGCGIPARDLSRVKQKFFKGNATRR--GS 437

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I       +   +   L     +     ++  L 
Sbjct: 438 GIGLAVADEIVCLHGGTLEIASEEGKGTAVTITLP 472


>gi|259505959|ref|ZP_05748861.1| sensor histidine kinase [Corynebacterium efficiens YS-314]
 gi|259166440|gb|EEW50994.1| sensor histidine kinase [Corynebacterium efficiens YS-314]
          Length = 471

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 60/242 (24%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCS------------RICHDIISPIGAIHNSLELLDEVGIEDE 48
           +A  +   L  +   ++L +               H++ +P+ ++    EL       D 
Sbjct: 226 LANALNIMLEQLQ-ASILSAQEKESQMRRFVGDASHELRTPLTSVKGYSELYHSGATRDA 284

Query: 49  V--MQLIRLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
              +  I   +    + ++ +               VD L     +   +          
Sbjct: 285 DWVLSKISGEAQRMSVLVEDLLSLTRAEGQQMEKRPVDVLELSLSVASSMRAAWPERSIT 344

Query: 101 QVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            V+ TG    +  +     ++L NL             V I +       +  +  +G  
Sbjct: 345 VVNKTGSLPVVEGDATRLHQVLTNLVNNGLNHGGPDASVEIEISAEGGSVLVRVVDDGVG 404

Query: 158 ARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +       L   ++  +  +       V +  
Sbjct: 405 MTAEDAQHIFERFYRTDTSRSRASGGSGLGLAITKSLVEGHRGTITVDSEVGEGTVFTIT 464

Query: 213 LE 214
           L 
Sbjct: 465 LP 466


>gi|255261966|ref|ZP_05341308.1| alkaline phosphatase synthesis sensor protein PhoR [Thalassiobium
           sp. R2A62]
 gi|255104301|gb|EET46975.1| alkaline phosphatase synthesis sensor protein PhoR [Thalassiobium
           sp. R2A62]
          Length = 344

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++I  +  +  +     + + H++ +P+ A+   +E L      +    D  + ++   +
Sbjct: 103 QDITASREAEQMRRDFVANVSHELRTPLTALLGFIETLSGAARDDAAARDRFLSIMGTEA 162

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----------VIEDFIAVDKRVQVSWTG 106
                 ++ +                                    +++ +  +    + 
Sbjct: 163 GRMSRLVEDLLSLCRVEEDQRVRPTDTVELMGLIQSAADTLKTSRPYMSRNCDILGPESC 222

Query: 107 EKIDLSRERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           E    + +  +++LNL   A          + R    +      +      +   G+   
Sbjct: 223 EITGDADQLRQVMLNLIENALKYGYANSAVIVRVATTSHDRALGQAAVKIDVTDTGDGIE 282

Query: 160 FPEK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +    +    +    V  +   ++ +L            S LL 
Sbjct: 283 PHAIGRLTERFFRVDSHRSREMGGTGLGLAIVKHIVDRHRGKLRISSEKGVGSTFSVLLP 342


>gi|228934915|ref|ZP_04097746.1| hypothetical protein bthur0009_33690 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228824815|gb|EEM70616.1| hypothetical protein bthur0009_33690 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 510

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIKTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYAHDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +       +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDTFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|218890338|ref|YP_002439202.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218770561|emb|CAW26326.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 918

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
             +  +     Y               D    L D   +        +            
Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L+NL   A      G       +          ++S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|165870457|ref|ZP_02215112.1| sporulation kinase B [Bacillus anthracis str. A0488]
 gi|227815814|ref|YP_002815823.1| sporulation kinase B [Bacillus anthracis str. CDC 684]
 gi|254753786|ref|ZP_05205821.1| sporulation kinase B [Bacillus anthracis str. Vollum]
 gi|164713952|gb|EDR19474.1| sporulation kinase B [Bacillus anthracis str. A0488]
 gi|227003232|gb|ACP12975.1| sporulation kinase B [Bacillus anthracis str. CDC 684]
          Length = 402

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTEQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQRLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGVGM-DQEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGAGLGMMVVFSVVQAMNGKIDIISEKGTGTTFLLTFP 397


>gi|164686355|ref|ZP_02210385.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM
           16795]
 gi|164601957|gb|EDQ95422.1| hypothetical protein CLOBAR_02793 [Clostridium bartlettii DSM
           16795]
          Length = 433

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++I   +   ++     + + H++ +P+ +I   +E L      +    +  + +I   S
Sbjct: 195 EDITELVKLENMRKDFVANVSHELKTPLTSITGFVETLKINDDIDKNTRNHFLDIIEKES 254

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTG 106
                 ++ + L        D       +  V ++   + + +                 
Sbjct: 255 NRLKGLIEDILLLSSIENGQDLSYEKVKLFDVFKEVCEITEYIASSKNITISYNFEDEDV 314

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKF 164
                     +I LNL        P+ G + +     +     I   K NG      E  
Sbjct: 315 CIYGFRDNIKQIFLNLIDNGIKYTPKDGHIEVVQHYDENRQNIILEFKDNGIGI-PKESL 373

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +            I    +       +       +  E I          + 
Sbjct: 374 NRIFERFYRVDKARSRDIGGTGLGLAITKHMVKSLGGNITVESILGIGSDFIVTIP 429


>gi|77917797|ref|YP_355612.1| two component signal transduction histidine kinase/response
           regulator hybrid [Pelobacter carbinolicus DSM 2380]
 gi|77543880|gb|ABA87442.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
           2380]
          Length = 749

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 31/243 (12%)

Query: 3   KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLS 56
           KN+    L +  + A+  L   + HD  + +  I    + L +          ++ I  +
Sbjct: 368 KNLQKQFLHAQKMEAMGRLAGGVAHDFNNLLTVISGYSQYLLQKYSDEALQGCLEQIVKA 427

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----- 111
              A      +             + L  +   +E  +       V     +        
Sbjct: 428 GEQAASLTSQLLAFSRRQVMQTKEMDLNGVTADMEKMLHRILGADVDLVVLRDPRLGLVN 487

Query: 112 --SRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKIN 154
               +  ++++NL + A  ++P GGK                  +     +  + S+   
Sbjct: 488 ADRGQIEQVIVNLAVNARDAMPEGGKLTIETINIELDEIYSTWHTGLAPGHYVMMSVTDT 547

Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     PE   +I +    +        +    V  +  ++   +               
Sbjct: 548 GIGM-DPEIMGKIFEPFYTTKETGKGTGLGLSTVYGIVQQSGGHIYVYSEPGMGTTFKIY 606

Query: 213 LEK 215
           L +
Sbjct: 607 LPR 609


>gi|329765965|ref|ZP_08257527.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137514|gb|EGG41788.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 540

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 84/226 (37%), Gaps = 17/226 (7%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQL 52
           K     L +  L  +  L  R+ HD+ +P+  I  SL+LL +   + +         ++L
Sbjct: 315 KKTQELLKAERLSTIGELSGRLAHDLRNPLSVIKISLDLLKQSPADTKISDDVTTKRLEL 374

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           I  S      ++  +      +    S   +  I     + I+V   +++  +G   +++
Sbjct: 375 IESSVERISHQIDDVLDYVRNSPLKLSRRSIRKIILGSIEKISVPHNIKILVSGLDAEIN 434

Query: 113 RERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +  KI    +NL + +  + P GG + I ++   ++ I     +G+     E   QI +
Sbjct: 435 CDYIKIDAAFINLILNSIQANPEGGTIEIKIKSDHDDVIIDFIDSGSGI-PDEVMNQIFE 493

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +       +   +K ++  +         +  L K
Sbjct: 494 PLFTTKQQGTGLGLASCKNIVELHKGKITVKNNP---TTFTVRLPK 536


>gi|239943793|ref|ZP_04695730.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239990246|ref|ZP_04710910.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 509

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 65/230 (28%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55
           + K +    +  +      + + H++ +P+ AI    E+L++     + M      L+  
Sbjct: 260 LEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVS 319

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +      ++ +     +          D  +       +          +         
Sbjct: 320 ETRRLNDLVENLMEVTRFDAGTARLVLDDVDVADQVTACIDARAWLDAVHLDAERGMMAR 379

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
              R    IL NL   A         V + V+    E +  ++ +G        P  F +
Sbjct: 380 LDPRRLDVILANLIGNALKHGG--SPVGVRVRTEGEELVIEVRDHGPGIPEEVLPHVFDR 437

Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +   +     +  AH +   +      D   V +  L +
Sbjct: 438 FYKASASRPRSEGSGLGLSIAVENAHIHGGDISAANSPDGGAVFTLRLPR 487


>gi|228996990|ref|ZP_04156622.1| hypothetical protein bmyco0003_15730 [Bacillus mycoides Rock3-17]
 gi|228762731|gb|EEM11646.1| hypothetical protein bmyco0003_15730 [Bacillus mycoides Rock3-17]
          Length = 393

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 15/226 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSM 58
           K       S  L     L + I H+I +P+ A+   + LL        +  + ++     
Sbjct: 163 KTEELLRKSEKLAVVGQLATAIAHEINNPLTAMKGFMHLLKSSENKKNEHYIDIVLSEIE 222

Query: 59  SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +   +    +  + ++   +T +   +  
Sbjct: 223 RIESITNEFMALAKPQTLEIKTNDLNVLMKQVVMILQPQAMMNNIQITTEFTSDTSFILC 282

Query: 114 ERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           E  ++      +   ++          + I     KN+        G           + 
Sbjct: 283 EGNQLKQVFINILKNAIEATAMGGEVLIQIEYIPDKNQVNIRFTDYGCGIEKDRIPY-LG 341

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       D   +       +  +++ ++L E        ++  L 
Sbjct: 342 EPFYSIKEDGIGLGLMICYKMIEKHQGKILIESEVGKGTTINVNLP 387


>gi|229004655|ref|ZP_04162392.1| hypothetical protein bmyco0002_16080 [Bacillus mycoides Rock1-4]
 gi|228756543|gb|EEM05851.1| hypothetical protein bmyco0002_16080 [Bacillus mycoides Rock1-4]
          Length = 638

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 15/226 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSM 58
           K       S  L     L + I H+I +P+ A+   + LL        +  + ++     
Sbjct: 408 KTEELLRKSEKLAVVGQLATAIAHEINNPLTAMKGFMHLLKSSENKKNEHYIDIVLSEIE 467

Query: 59  SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +   +    +  + ++   +T +   +  
Sbjct: 468 RIESITNEFMALAKPQTLEIKTNDLNVLMKQVVMILQPQAMMNNIQITTEFTSDTSFILC 527

Query: 114 ERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           E  ++      +   ++          + I     KN+        G           + 
Sbjct: 528 EGNQLKQVFINILKNAIEATAMGGEVLIQIEYIPDKNQVNIRFTDYGCGIEKDRIPY-LG 586

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       D   +       +  +++ ++L E        ++  L 
Sbjct: 587 EPFYSIKEDGIGLGLMICYKMIEKHQGKILIESEVGKGTTINVNLP 632


>gi|254467050|ref|ZP_05080461.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
 gi|206687958|gb|EDZ48440.1| sensor histidine kinase/response regulator [Rhodobacterales
           bacterium Y4I]
          Length = 764

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 54/225 (24%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72
           A L   + H+I +P+  +    ELL +  +++E          S    L  +        
Sbjct: 218 AFLA-NMSHEIRTPMNGVVGMAELLCDTELDEEQRLYASTIKNSGEALLVIINDVLDYSK 276

Query: 73  --------YTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKIL 119
                   +    D    L ++  +++               +              ++L
Sbjct: 277 IEADKLELHPEPFDLERCLHEVVMLLQPTARDKGIALLVDYDLFLPTRFTGDPGRIRQVL 336

Query: 120 LNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            NL   A      G          S  D +     +++  G      +      + N   
Sbjct: 337 TNLAGNAVKFTKEGHVTLRVTGITSPDDKQCAVHVNIEDTGIGIPQEKISHIFGEFNQVE 396

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       L       +  +  +         L 
Sbjct: 397 DERNRQFEGTGLGLAISKRLIEMMGGEIWVDSEEGKGSCFGFRLP 441


>gi|56479283|ref|YP_160872.1| histidine kinase [Aromatoleum aromaticum EbN1]
 gi|56315326|emb|CAI09971.1| Histidine kinase [Aromatoleum aromaticum EbN1]
          Length = 766

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 63/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLS 56
           +A++         L AL  L + + H++ +P+  +     +L+E            IR++
Sbjct: 393 LARHRESLHQREKLAALGSLLAGVAHELNNPLSVVVARAVMLEEQGDPATQAAAAKIRIA 452

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDL 111
           +      ++               + + ++                  V +        +
Sbjct: 453 AERCARIVRTFLAMARQQQPERVSVAINEVVSAALDITSYAVRTSGIDVSLDLADNLPAV 512

Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPEK 163
             +     ++ LNL + A  +L                 + +     +  NG        
Sbjct: 513 LADTDQLHQVFLNLIINAQQALQDQPGPRRIRLTSRYDPTGDVIRIIVADNGPGIPAG-L 571

Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +        +     + +   +   L  +   +     +  L 
Sbjct: 572 RARVFEPYFTTKPVGVGTGVGLAVCLGIVEAHGGTLTVDCPVEGGAEFTIALP 624


>gi|67920146|ref|ZP_00513666.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67857630|gb|EAM52869.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 415

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 2   AKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSS 57
                     ++ L +   S + HD  +P+  I  S  LL++   +   ++ +   ++  
Sbjct: 149 RTTQLLKAQELNQLKSEFVSMLSHDFRNPLNTILLSTGLLEDSYEQLTREQQLSYFQMIR 208

Query: 58  MSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +     + +                    +D  +    I   +        ++ +++ G
Sbjct: 209 NAVHDMNQLLSEVLLLGKADSGKLKTNFIELDIQLFCKQIIHSLHLSFEDKNQIILNFDG 268

Query: 107 EKI-----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF- 160
           +          +    IL NL   A    P+GGK+ +++   +    FS+K  G      
Sbjct: 269 DFPSELELWDEKLLWHILHNLLNNALKYSPQGGKIFLNIIAEEKTVTFSIKDQGIGISQE 328

Query: 161 --PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                F      +    I    +    V          +  E   D+      +L +
Sbjct: 329 SQQHLFETFYRADNVGNISGTGLGLSIVRKCVEAYNGNIFVESELDNGTTFRVILPR 385


>gi|186685045|ref|YP_001868241.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186467497|gb|ACC83298.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 449

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 75/234 (32%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           M + +       +L + L +   H+  +P+  IH+S ELL+          +   ++ I+
Sbjct: 209 MRQALAKEREFSELKSRLLTTASHEFRNPLTTIHSSAELLEHYRHLWSDERQQIHLRRIQ 268

Query: 55  LSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S M     L  + +               ++ +    D+ + +E        +  S   
Sbjct: 269 TSVMHITQLLNDLLVLNQDETGKLEFNPTPLNLVEFCRDLLEELEQSDRSQHAIVFSSEC 328

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +    + +     +IL NLF       P G  V  SV  +    IF  + +G      + 
Sbjct: 329 QCPSANLDAKLLRQILTNLFSNCLKYSPIGSTVKFSVTTANERAIFQTQDSGIGIPPADI 388

Query: 164 ---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F      +    I    +    V      +   ++ E   D     + +L 
Sbjct: 389 EHIFEPFHRASNTGNIPGMGLGMSIVKQGVDLHGGEIIVESAIDAGTTFTVILP 442


>gi|319901914|ref|YP_004161642.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319416945|gb|ADV44056.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 870

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 50/225 (22%), Gaps = 18/225 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
            + +  L +   + + H+I +P+ AI    +LL +          E + LI  +    + 
Sbjct: 642 AMQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLNAFSKEEVQEFVGLINTNCTLLLA 701

Query: 63  RLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKID 110
            +                     +    + DI       +     +++            
Sbjct: 702 LINDILDLSRIEAGTMEFNLAEFNLNYIMQDIYDSQYLSMPQGVELRIECPVEEGKSIHT 761

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +++ NL   A     +G        D        ++  G               
Sbjct: 762 DIVRLKQVVNNLVNNAKKFTVQGSITIGYTVDEPEYTTVYVEDTGKGIPEEAAKHIFERF 821

Query: 171 NVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +    +  +               + 
Sbjct: 822 YKVDNFVQGAGLGLSICQTIVEHLRGTISVFSQVGRGTRFEVRMP 866


>gi|308273268|emb|CBX29871.1| hypothetical protein N47_F15660 [uncultured Desulfobacterium sp.]
          Length = 665

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 58/233 (24%), Gaps = 27/233 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLK 65
             M+   LL   + HD  + +  I    EL  +           ++ I  +++ ++   +
Sbjct: 291 QKMEAAGLLAGGVAHDFNNMLNVILGYTELAMDKTDTDLPLHADLEEIHKAAIRSMDITR 350

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDLSRERAKI 118
            +         +  ++ L    + +   +       +                  +  +I
Sbjct: 351 QLLTFARKQTIIPVVLNLNQTVESMIKMLRHLMGEDIDLAWLSGADPCPIKMDPSQIDQI 410

Query: 119 LLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKINGNLARFPEK 163
           L NL + A  ++   G                   +   +    + S+  +G        
Sbjct: 411 LANLCVNARDAITGVGKVTIETGNAVFDEIYCAGHTGFVAGEYVLLSVSDDGCGMDKEIL 470

Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       I     +    V  +  +N   +               L +
Sbjct: 471 NQIFEPYFTSKEIGQGTGLGLSTVYGIVKQNNGFINVYSEPGKGTTFRIYLPR 523


>gi|293370846|ref|ZP_06617391.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|299148649|ref|ZP_07041711.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|292634062|gb|EFF52606.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|298513410|gb|EFI37297.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 654

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + + +     +  L +   + + H+I +P+ AI     +L   +      E ++LI  ++
Sbjct: 421 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVENREEMSEYVELIGTNT 480

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----T 105
              +  +                Y   +D    L +IEQ ++  +  +            
Sbjct: 481 DLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTFTFAERLSQ 540

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N  + A      G               F +   G      E+  
Sbjct: 541 CTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCGM-SSEQCI 599

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      S +    +       +      ++  E  ++        L 
Sbjct: 600 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 650


>gi|237721425|ref|ZP_04551906.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229449221|gb|EEO55012.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 632

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 64/231 (27%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + + +     +  L +   + + H+I +P+ AI     +L   +      E ++LI  ++
Sbjct: 399 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGFSNMLPHVENREEMSEYVELIGTNT 458

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----T 105
              +  +                Y   +D    L +IEQ ++  +  +            
Sbjct: 459 DLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTFTFAERLSQ 518

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N  + A      G               F +   G      E+  
Sbjct: 519 CTLYTDKNRLIQLLANFAVNAIKFTEVGTIRMGYRLLDPETIYFYVSDTGCGM-SSEQCI 577

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      S +    +       +      ++  E  ++        L 
Sbjct: 578 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGSTFWFTLP 628


>gi|228913013|ref|ZP_04076653.1| hypothetical protein bthur0012_2580 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846633|gb|EEM91645.1| hypothetical protein bthur0012_2580 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 314

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 63/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 72  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    I       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E I          + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 308


>gi|164687351|ref|ZP_02211379.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM
           16795]
 gi|164603775|gb|EDQ97240.1| hypothetical protein CLOBAR_00992 [Clostridium bartlettii DSM
           16795]
          Length = 438

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +N+   +   ++     + + H++ +PI +I   +E L      +   ++  + +I   +
Sbjct: 196 ENVTEYVKLENMRKEFVANVSHELKTPITSIKGFVETLKMTDNLDDDTKNRFLTIIENEA 255

Query: 58  MSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                 +        +       V+ +      E+V E    + K+  +    E  +   
Sbjct: 256 TRLTRLIDDILLLSTIENKTKKKVEKVDLFEVFEEVHEVVNYIAKKKNIKVKYEFKNKYI 315

Query: 114 ERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         +ILLN+   A       G V I       +    +K NG      +   +
Sbjct: 316 DLWEYSGYIRQILLNIISNAIKYTGENGSVNIKQYIKAKKVFIEVKDNGIGIPQEDI-ER 374

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +           ++    +       +       +  E            L 
Sbjct: 375 IFERFYRVDKARSRSVGGTGLGLAITKHMVKALNGNIKVESELGVGSKFIIELP 428


>gi|163939802|ref|YP_001644686.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861999|gb|ABY43058.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 357

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 74/233 (31%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLPVEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +       + +          +    +   L        +  + +  +K +++    +K+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYSPERATYRLDQQLKQIVLNSEPLWDEKGLELDLDMDKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ K     S+   G      +    
Sbjct: 240 CVTADKESMSQVWINLIHNSIKFTPNGGMITIHLKEHKEFLEVSIHDTGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++ ++  E ++ +       + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGKIKVESVEGNGTEFIVRIP 352


>gi|116624965|ref|YP_827121.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228127|gb|ABJ86836.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 633

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           + +        ++ + +L   I HD  + +  I  ++E+    L       E++     +
Sbjct: 253 LMEEELLRARKLESLGVLAGGIAHDFNNFLTIIRGNIEVAMERLQPDDPVQEIVAETATA 312

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDL 111
              A +    +         V  L  + DI       +     V V  +           
Sbjct: 313 CRRAELLASQLLTFAKGGAPVRRLASVKDIVTDAVQLLRAGSSVSVDVSIAADLRFAYLD 372

Query: 112 SRERAKILLNLFMVAHASL--------PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           + +  +++ NL   A  ++             V     D+      +++  G      + 
Sbjct: 373 AGQIGQVIHNLLRNAREAMGEGGIIEVRAENVVCPDAIDTDPRVRIAIRDYGRGI-PADI 431

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +   +  +    V  +  +++  +L E +     V +  L 
Sbjct: 432 RPRIFDPYFTTKPGASGLGLATVYAIVAKHEGHILVESMPGVGSVFTVDLP 482


>gi|313108820|ref|ZP_07794805.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310881307|gb|EFQ39901.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 918

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
             +  +     Y               D    L D   +        +            
Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L+NL   A      G       +          ++S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|299147742|ref|ZP_07040805.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298513925|gb|EFI37811.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 570

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     LL   DE  +    M L++ ++
Sbjct: 336 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 395

Query: 58  MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +   + ++    G +D ++       L             D  V++ +      
Sbjct: 396 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDTAVELRFDENSPQ 455

Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  +       ++L N    A     +G        + +++  F +   G      +K  
Sbjct: 456 IVIDADKNRIMQVLSNFLTNALKFTTKGSITLSYSLEDESQVRFCVTDTGKGIPDEQKHE 515

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +S +    +       L +    ++  E  +         
Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVNRMGGKIGVESREGEGSCFWFT 563


>gi|296388021|ref|ZP_06877496.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 918

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
             +  +     Y               D    L D   +        +            
Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L+NL   A      G       +          ++S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDESGRERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|297570521|ref|YP_003691865.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926436|gb|ADH87246.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 528

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 69/245 (28%), Gaps = 35/245 (14%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
           M + +   L +  + A+  L   I HD  + + AI   ++L+              D+V 
Sbjct: 144 MERRL---LQAQKMAAIGNLAGGIAHDFNNILTAIGGYVQLILLKSGNDQRISQDADQVR 200

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             I+ ++      L F R       S+     + +  +++   I     ++ S     I 
Sbjct: 201 AAIKRATDLVSQLLTFSRQTEHPKKSIQVAPVVQEALKLLRASIPASIELRQSLDSAAII 260

Query: 111 --LSRERAKILLNLFMVAHASL-----------------PRGGKVTISVQDSKNENIFSL 151
                +  ++++NL   A  S+                     +  +++  +       +
Sbjct: 261 LGDPTQLHQVVMNLATNASHSMLEGGGTLGVSLREIAIEEYERRPQLTMLPTGRYLCLEV 320

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G      E   +I +    +        +       +   +   +            
Sbjct: 321 SDTGCGM-TQEIVGKIFEPYFTTKEIDQGTGLGLSVAHGIVSSHGGTINVYSEPGQGTTF 379

Query: 210 SALLE 214
              L 
Sbjct: 380 QVYLP 384


>gi|237732270|ref|ZP_04562751.1| sensor protein RcsC [Citrobacter sp. 30_2]
 gi|226907809|gb|EEH93727.1| sensor protein RcsC [Citrobacter sp. 30_2]
          Length = 948

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           +++ NL   A       G + + VQ S +     ++  G     
Sbjct: 572 DPDVPVALNGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCSGDYLSIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 689


>gi|225175908|ref|ZP_03729900.1| multi-sensor hybrid histidine kinase [Dethiobacter alkaliphilus AHT
           1]
 gi|225168496|gb|EEG77298.1| multi-sensor hybrid histidine kinase [Dethiobacter alkaliphilus AHT
           1]
          Length = 678

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 26/239 (10%)

Query: 1   MAKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLI 53
           + K +  + L +  L A+  L   + HD  + +  +  +L +      +D      ++ I
Sbjct: 298 LRKRMEEDVLQATKLEAVSVLAGGVAHDFNNLLTVVLGNLSIAKMYAAKDTQILHKLKEI 357

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++       + +            ++ L D  Q    F+     V VS++        
Sbjct: 358 ENAAQQTKELTRQLLTLSKGAALSKKVVSLEDFLQETASFVVRGTNVNVSFSFADDLPPV 417

Query: 114 E-----RAKILLNLFMVAHASLPRGGKVTIS-------------VQDSKNENIFSLKING 155
           +      ++++ NL + A  ++P GG + I              + +       S+   G
Sbjct: 418 DIDAGQFSQVMNNLLINAIQAMPEGGTIRICAETLNIIHNGLLFMLEPGRYIKISVSDEG 477

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +I +    +  +   +       +  ++   L  E         +  L 
Sbjct: 478 GGIAPEDLS-KIFEPFFTTKEEGTGLGLVTSYNIVRQHGGHLAVESEVGAGTTFNIYLP 535


>gi|188584124|ref|YP_001927569.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347622|gb|ACB83034.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 686

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           A+++    S  +      +   + + H++ +P+  I    +LL +  +  E    +    
Sbjct: 161 ARSLDEAKSRAEAANVAKSRFLATVSHELRTPLNGILGMADLLLDTPLNPEQRTYVEAFR 220

Query: 58  MSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQ 101
            S           +  +    G +D      D+  +             +  + +   + 
Sbjct: 221 TSGKALLGLVDGILDFSRIEAGRLDLAAEPFDVAALVEGVVELLAPRAQDKGLEIALDIA 280

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL---KINGNLA 158
              T  ++  +    +IL+NL   A      GG      +  + +    +   +  G   
Sbjct: 281 DDLTALRVGDADRVRQILVNLAGNAIKFTQAGGVGVSLARAGEGQREGFVLTIEDTGPGI 340

Query: 159 RFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   F +   G   ++ +   +       L       +          +   +L 
Sbjct: 341 PEERIPILFEEFEQGEDSASHEGTGLGLAITRRLVERMNGTIEARSTVGRGSIFRVVLP 399


>gi|330957178|gb|EGH57438.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 418

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 193 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 249

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 250 DQFLAFIRDGRDEEIEEVDLGDLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 309

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 310 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 369

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 370 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 408


>gi|298385607|ref|ZP_06995165.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298261748|gb|EFI04614.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 909

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           MA+ +       +L   L     + + H+I +P+ AI    EL+   ++   ++E M +I
Sbjct: 533 MAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPAEKEEYMSII 592

Query: 54  RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-Q 101
           + ++   +  +             +               L  + Q       V+ ++  
Sbjct: 593 QSNNELLLRLINDILDLSKIESGILDCKRETFNLAKVCNELYTMIQPKITNPDVEFQMDN 652

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            S             ++ +N    A       G + +     +      ++ +G      
Sbjct: 653 SSPDCWIFLDRSRLKQVWMNYLTNAVKCTKS-GYIKMGYSIEREGIRIYVEDSGVGI-PE 710

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++               +       +       +             A + 
Sbjct: 711 ELQERVFGRFQKLNEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTFWAWIP 765


>gi|255526545|ref|ZP_05393454.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296187651|ref|ZP_06856045.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255509795|gb|EET86126.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296047608|gb|EFG87048.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 472

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 67/230 (29%), Gaps = 20/230 (8%)

Query: 5   ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
           +   L + + L   + S + H+I +P+  +   +E L +      +E  Q+        I
Sbjct: 237 LAETLQNQEMLRKRMTSDMAHEIRTPLTTLKTHVEALLDGIWEPTEERFQVFYDEIERLI 296

Query: 62  IRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKID 110
             +  ++             +   +    L       E     +       +        
Sbjct: 297 NLVNKLQNLAKLEQADLKLNSTKFNLSEELKKTISNFEPLYLKNNYTIEAKIYKDIWVYM 356

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
              +  +I+ NL   ++  L   GKV + +++ +      +K NG      +    F + 
Sbjct: 357 DRDKLKQIMHNLLSNSYKYLKSNGKVVVELKE-EEGICIKVKDNGIGIPEKDLPYIFERF 415

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++          I       L   +  ++  E  +           K
Sbjct: 416 YRTDLSRTKNTGGSGIGLTITKSLVECHNGKISVESKEKEGSTFVVWFPK 465


>gi|229089400|ref|ZP_04220672.1| hypothetical protein bcere0021_2490 [Bacillus cereus Rock3-42]
 gi|229182668|ref|ZP_04309910.1| hypothetical protein bcere0004_2520 [Bacillus cereus BGSC 6E1]
 gi|228600808|gb|EEK58386.1| hypothetical protein bcere0004_2520 [Bacillus cereus BGSC 6E1]
 gi|228693934|gb|EEL47625.1| hypothetical protein bcere0021_2490 [Bacillus cereus Rock3-42]
          Length = 314

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + K       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 72  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVATSEIEKQEYLKILYM 131

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    I       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E I          + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 308


>gi|219852596|ref|YP_002467028.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219546855|gb|ACL17305.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 761

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 25/231 (10%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRL 55
                S+ +L   A + S   HD+  P+ +I +  ELL+       +   ++ +  ++  
Sbjct: 525 EKLMASNEELQRYAYVAS---HDLQEPLRSIVSFSELLNRRYRGKLDKDADEYIRFIVDG 581

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 +    ++++   T +               I  +      +   V V      +
Sbjct: 582 GVRMQNLIKDLLQVSRIETQAQPFAPTDARTVVADSIRSLETPIHEISAVVTVDPLPIVM 641

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQI 167
               +  ++  NL   A           I++  +   +   FS++ NG      E F +I
Sbjct: 642 ADPSQLEQVFTNLIGNAIKYRRPEVPPVITISAERYGDWWEFSVRDNGIGI-ESEFFDRI 700

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +   I    V  +   +  R+  E            L 
Sbjct: 701 FEMFRRLHTIDEYEGTGIGLAIVKRIVERHGGRIRVESKPGEGSTFFFTLP 751


>gi|196229114|ref|ZP_03127979.1| integral membrane sensor signal transduction histidine kinase
            [Chthoniobacter flavus Ellin428]
 gi|196226346|gb|EDY20851.1| integral membrane sensor signal transduction histidine kinase
            [Chthoniobacter flavus Ellin428]
          Length = 1040

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 66/238 (27%), Gaps = 30/238 (12%)

Query: 5    ICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE----LLDEVGIE----DE 48
                L   +L           L + + H++  P+ AI ++ +     L++   +      
Sbjct: 786  ERARLQDAELARVGRVSLLGELSASLAHELSQPLAAILSNAQAALRFLEDEPADVAETRA 845

Query: 49   VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVS 103
             ++ I  S   A   ++ MR       +      +    +     +  D +     V   
Sbjct: 846  CLRDIAASDQRASEIIRHMRSMMKKGEAQLEPRDINLDIEGVLALLHSDLVTRQVVVTTE 905

Query: 104  WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTI-----SVQDSKNENIFSLKING 155
               +   +  +  ++   L      +  ++             + +D       S+  +G
Sbjct: 906  LQPDLPSVRGDHIQLQQVLLNLIVNSGDAMRSADPEARSIVVSTRRDGAGLVRVSVADSG 965

Query: 156  NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 P+K  +I D    +  +   +       +   +   L  E            L
Sbjct: 966  PGI-EPDKLERIFDPFYSTKSNGLGMGLSICRAIIKAHGGHLWAESELGRGATFHFTL 1022


>gi|253575465|ref|ZP_04852802.1| sporulation kinase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845112|gb|EES73123.1| sporulation kinase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 232

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 66/211 (31%), Gaps = 8/211 (3%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            LS +  +  + + I H++ +P+ A+   L+LL        +         +       +
Sbjct: 18  TLSRLASIGQIAAGIAHEVRNPLTAVKGFLQLLQREVSHSYLDFACSELEQAISTLQDLL 77

Query: 68  RLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKIDLSRERAKILL 120
           +++          +++    L  +  + +D I   +  +   +          +  K   
Sbjct: 78  QVSKPDLEDESCIAINLCSELESLLYLFQDQIYRVQIAKKFRNSDEIIYGKRNQLKKAFF 137

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL   A  ++P  G +TI      +     +   G      EK   +      +  +   
Sbjct: 138 NLLKNAFEAIPNEGTITIEHYRVGDIIYVIISDTGVGV-PKEKLQLLGTPFFTTKDEGTG 196

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           +    V    +++   +  +  +      + 
Sbjct: 197 MGLTQVYSTIYQHGGTIDVKSREGIGTTFTI 227


>gi|218260509|ref|ZP_03475779.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224494|gb|EEC97144.1| hypothetical protein PRABACTJOHN_01442 [Parabacteroides johnsonii
           DSM 18315]
          Length = 519

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +   +     +  L +   + + H+I +P+ AI     LL   ++   + E + +I  ++
Sbjct: 289 LQYEVKKADEANRLKSAFLANMSHEIRTPLNAIIGFSNLLVEANDPEEKKEFVHIITSNN 348

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104
              +  +  +                  D    + D+ Q ++        V++ +     
Sbjct: 349 ELLLQLINDIIDMAKIESGTLDFTYSDTDINQLMEDLCQQMKMKNTRPDSVKIEFVQRQS 408

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  S    +I++N    A     +G       +  + +  F ++  G      +K 
Sbjct: 409 ECIINTDSNRIMQIMINFMTNAMKFTEQGSITFGYKKS-EKDIYFFVRDTGIGI-PSDKK 466

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            QI D  V   +      +      ++  +    +  +            L 
Sbjct: 467 EQIFDRFVKLNTFAQGTGLGLPICAMIVDKFGGTIGVDSQQGEGATFWFRLP 518


>gi|52079997|ref|YP_078788.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52785372|ref|YP_091201.1| KinA [Bacillus licheniformis ATCC 14580]
 gi|319646226|ref|ZP_08000456.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|52003208|gb|AAU23150.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347874|gb|AAU40508.1| KinA [Bacillus licheniformis ATCC 14580]
 gi|317391976|gb|EFV72773.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 603

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 74/226 (32%), Gaps = 13/226 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSS 57
            +     + S  L     L + I H+I +P+ AI   L+L+       E     +    S
Sbjct: 379 KQTEELMVRSEKLSIAGQLAAGIAHEIRNPLTAIKGFLQLMKPTMEENEHYFNIIFSELS 438

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKI 109
              +I  + + LA     ++   + L  + + +   +             +         
Sbjct: 439 RIELILSELLMLAKPQQNALKEKLDLIRLIREVTALLETQANLNGILINTILTDDKIYIK 498

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++ +NL   A  S+P GG V ++V+++ +  +  ++  G          +I +
Sbjct: 499 GDQNQLKQVFINLIKNAVESMPNGGTVHLTVRETDDSVVVEVEDEGEGI-PEHVLKRIGE 557

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +      +       +   +   +  +   +       L  K
Sbjct: 558 PFLTTKEKGTGLGLMVTFNIIENHNGTIEVDSKAEKGTTFKILFPK 603


>gi|46199441|ref|YP_005108.1| two-component system histidine kinase [Thermus thermophilus HB27]
 gi|46197067|gb|AAS81481.1| two-component system histidine kinase [Thermus thermophilus HB27]
          Length = 468

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 56/207 (27%), Gaps = 17/207 (8%)

Query: 23  CHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSAIIRLK---------FMRLAFG 72
            H++ +PI AI   +  LL    + +   + + +    A    K                
Sbjct: 255 SHELRTPITAILGHVGYLLRRTPLTEAQRESLEVVKREAERMGKLVSDLLDLSQSGTWRI 314

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
               V  L  L ++ +           V+       +       +++ NL   A  +  R
Sbjct: 315 RPVPVRVLDLLEEVREEFAKSFDGAILVEAPEDLYVLGDPDRLHQVMANLVSNALKAGAR 374

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SHDIQFYYVI 187
              +        ++ +  ++ +G        P  F +    +     +     +    V 
Sbjct: 375 HVWLRAFDL--GDKAVVRVEDDGEGIPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVK 432

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +   +  E         S  L 
Sbjct: 433 AILEAHGGEVWVESQVGKGTAFSFSLP 459


>gi|150017892|ref|YP_001310146.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904357|gb|ABR35190.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 463

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------SMSAIIR 63
               L   L   + H++ +P+  + + +E L +   E    +LI                
Sbjct: 239 EQEKLRQRLTKDVSHELRTPLSTLQSHMEALIDGIWEPTPERLISCHEEILRLKRLVGDL 298

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRERAK 117
            K  +          +   +G+  + I      +        +             + ++
Sbjct: 299 EKLAQYESENLVLNKTEFNIGEAVKNIVLNFEKEFLNKGVSLIFHEKDIVGYLDKDKISQ 358

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
           +++NL   A     +GGKV +++ +  N    S+K  G      +    F +    +   
Sbjct: 359 VVVNLISNALKYTQKGGKVDVNISEDNNYIEISVKDTGIGISQDDLPYVFERFYRADESR 418

Query: 175 T--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I       +   +   +  + I          + K
Sbjct: 419 NKLTGGAGIGLTISKSIVEAHGGNITVDSIIGKGTNFVVKVPK 461


>gi|119716163|ref|YP_923128.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536824|gb|ABL81441.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 423

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 58/218 (26%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLEL-LDEVGIED---EVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + H++ +P+ +I   + + L+   ++      +  +  +       ++ +     +
Sbjct: 198 FVALVSHELRTPLTSIVGYVAVALERDDLDPVLRTQLDAVDRNGKRLERLVQDLLDEVQH 257

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------VSWTGEKIDLSRERAKILLNL 122
           +G    L        VI        R+Q           V  +          A+++ NL
Sbjct: 258 SGRPLPLREQDTDLAVIVRECVAGARLQAARGGVRLDADVPDSIAFTGDPERLAQVVDNL 317

Query: 123 FMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
              A      GG   +            S++  G      E+                 I
Sbjct: 318 VSNAIKYTEPGGSARVQAIVVADGSVRISVQDTGIGIDPAERARLFSRFFRGAEASRRAI 377

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R+  +           +L 
Sbjct: 378 QGIGLGLSITKSIVESHGGRIEVDSEPGRGSEFRVVLP 415


>gi|262384808|ref|ZP_06077940.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262293524|gb|EEY81460.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 494

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 61/229 (26%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       +  L +   + + H+I +P+ AI    +LL   +++ +    + LI++++
Sbjct: 257 LIRAKEKAEEADMLKSTFLANMTHEIRTPLNAIVGFSDLLGVEEDLELRQNYISLIKMNN 316

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGE 107
              +  +            +       V     + DI   I+        + +       
Sbjct: 317 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMQDIYNSIQLRKPEGVEITLDACSDII 376

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166
                    +I +NL   A     +G        +       F +   G      E    
Sbjct: 377 FNIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEAEGKMVKFYVSDTGCGIPKDELDNI 436

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S  +    +       L  +    +     +         L 
Sbjct: 437 FARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLP 485


>gi|169827295|ref|YP_001697453.1| sensor protein [Lysinibacillus sphaericus C3-41]
 gi|168991783|gb|ACA39323.1| Sensor protein [Lysinibacillus sphaericus C3-41]
          Length = 561

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 59/238 (24%), Gaps = 29/238 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54
           M +          L +   + + H++ +PI  +    E L +     +  +         
Sbjct: 327 MTEQHRL----EKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDQEERNEITKIIY 382

Query: 55  LSSMSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S                      +        S    I     +   E  + +    +
Sbjct: 383 DESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHVHLLFDSE 442

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +             ++L NL   A      G  VT+ V+        S++  G+     
Sbjct: 443 FNDDAMINIDEDRIEQVLTNLVDNALRHTDEGS-VTVKVEKEPTFAKISVQDTGHGIPQD 501

Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +    +     +     +       +   +   ++ + +       +  L 
Sbjct: 502 DLPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 559


>gi|118587243|ref|ZP_01544671.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163]
 gi|118432385|gb|EAV39123.1| hypothetical protein VicK [Oenococcus oeni ATCC BAA-1163]
          Length = 630

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 61/228 (26%), Gaps = 30/228 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAF 71
             S + H++ +P+ ++++ +E L E  +    +           +     +    + L+ 
Sbjct: 392 FVSNVSHELRTPLTSVNSYIETLQEGALTQRKIAREFLGVAHDETQRMIHMINDLLELSR 451

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------------- 114
              G         +  + I   +     +         D   +                 
Sbjct: 452 MDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDS 511

Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +++ N+   A    P GG + I + ++ +  I S+K +G      +          
Sbjct: 512 DKFMQVVDNVINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYR 571

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +       +      ++  E   +        L K
Sbjct: 572 VDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 619


>gi|20090805|ref|NP_616880.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915870|gb|AAM05360.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 499

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 60/222 (27%), Gaps = 23/222 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H++ +P+ +I    +LL E        +  R  +  +I     ++       
Sbjct: 250 SEFIATVSHELKTPLNSIIGFSDLLLEDSSGKLSERQARYINNISISGKHLLQFIDDILD 309

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------------------KIDLSRERAK 117
                 G   +E    +F  + K ++  +                              +
Sbjct: 310 LSKIEAGKTFLEPENFEFTKIFKDIEKVFRPRVSGKKLSLNFEVDSGIKSFYADKMMFKQ 369

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NV 172
           IL NL   A    P  G +T+S     N     +K  G      +  +            
Sbjct: 370 ILYNLISNAVKFTPEEGSITVSAAKIGNMVRICVKDTGIGISREDMDSFFQPFKQPDSFF 429

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +   +  + V      +   +  E +          L 
Sbjct: 430 KRRYERTGLGLFLVKRFVEMHGGNIQAESVPGEGSSFIIELP 471


>gi|255325894|ref|ZP_05366986.1| two-component system sensor kinase TcsS1 [Corynebacterium
           tuberculostearicum SK141]
 gi|255297106|gb|EET76431.1| two-component system sensor kinase TcsS1 [Corynebacterium
           tuberculostearicum SK141]
          Length = 503

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 62/230 (26%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSS 57
           + +++       + +        H++ +P+ ++    EL      +D  +   ++   S 
Sbjct: 265 LQRSVVRAQEKEEQMRRFVGDASHELRTPLTSLRGYTELYRSGATKDVDLVFSKIDDESK 324

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
             +++    + L       +D          +     A                S     
Sbjct: 325 RMSLLVEDLLALTRAEGTRLDLHPVDLLELALSVGSSARAAFPGREIKVANDAKSIPVVN 384

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
                  ++LLNL             VT+ ++   N+ +  +  +G      +    F +
Sbjct: 385 GDASRLHQVLLNLVTNGIRHGGEDAAVTLRLRREANDVLVDVSDDGKGMSQEDAAHIFER 444

Query: 167 IVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +           +    V  L  ++   +  +         +  L 
Sbjct: 445 FYRADTSRTRDTGGSGLGLAIVHSLVEQHDGSISVDSELGRGTTFTVRLP 494


>gi|212639859|ref|YP_002316379.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561339|gb|ACJ34394.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 423

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 76/228 (33%), Gaps = 14/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56
           + ++    L  M++V+ L + I H+I +P+  +   ++L+    I  E  +         
Sbjct: 197 LIRSKAIKLEKMEVVSQLAASISHEIRNPLTVVKGFMQLMKAKDISAETKEQYMNIALEE 256

Query: 57  -SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKID 110
            + + +I   ++  A  +   +++     ++E+VI+          V             
Sbjct: 257 LNRACMIIDDYLTFAKPFPEKMETFHVERELEKVIDMLRPFANMYGVQIVATLMPATMEG 316

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++   +  LN+      +   GGKV +     +      ++  G      E+  +  + 
Sbjct: 317 NAQYFRQCFLNIIKNGIEATTNGGKVYVDAYADEKTVTIVVRDEGEGM-TKEQLARFGEP 375

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA---LLEK 215
              +      +     I +          +        ++    LLEK
Sbjct: 376 YFSTKEKGTGLGAMVSIRIIETMNGTWRIQSEKGRGTTMTVSFMLLEK 423


>gi|209523203|ref|ZP_03271759.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209496354|gb|EDZ96653.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 258

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 59/230 (25%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLS 56
           N     S+ +L     S + HD+  P+ ++    +LL             + V  +I  S
Sbjct: 28  NQQLLRSNQELE-QFASVVSHDLQQPLTSLKAFAQLLQIECHDELREKPREYVNHIINAS 86

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEKID 110
                +    +      T S +  +   +         +  +    +  +Q     +   
Sbjct: 87  IRMQTMIQDLLIYCGCDTHSPNLELIDCNQLLAQILIDLRLEIDKNNATIQYDNFPKIKA 146

Query: 111 LSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLAR--FPEKFTQ 166
                 ++  NL   A           + IS Q++    IF    NG        E   +
Sbjct: 147 NHIHLTEVFQNLISNAIKYRSDDLAPSINISCQETDTNWIFCCADNGIGIESKDFENIFK 206

Query: 167 IVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I              I       +      ++  E              K
Sbjct: 207 IFTRLHTFKKYPGTGIGLSICKKIIESYGGKIWLESNPGVGTQFYFTFPK 256


>gi|198277470|ref|ZP_03210001.1| hypothetical protein BACPLE_03692 [Bacteroides plebeius DSM 17135]
 gi|198269968|gb|EDY94238.1| hypothetical protein BACPLE_03692 [Bacteroides plebeius DSM 17135]
          Length = 1340

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 58/215 (26%), Gaps = 21/215 (9%)

Query: 21   RICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
             I H+  +P+  I + LE L +       I + ++++ + +     +  + +       G
Sbjct: 818  NISHEFRTPLTLILSQLETLLQTDYLSTAIHNRILRIYKNAWNMRKLISELLDFQKQEEG 877

Query: 76   SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----------IDLSRERAKILLNLFM 124
             +   +   ++   +         +      E                 +  K+  NL +
Sbjct: 878  GLKLKVEEHNMVSFVHQIYTSFHEIASQKEIEYHFQASTENLPVWFDELQMHKVFSNLLL 937

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-----IDSH 179
             A    P  G + I +  +  + I ++   G      +            +         
Sbjct: 938  NAFKYTPTHGCINIEIYSNNKDAIITVSDTGIGISEKDIQKIFNQFYQVESQPNSLTPGT 997

Query: 180  DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I       +   +   ++           +  L 
Sbjct: 998  GIGLSIAKNIVELHHGNIIVHSTLQKGTRFTVSLP 1032


>gi|116051482|ref|YP_789685.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586703|gb|ABJ12718.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 918

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
             +  +     Y               D    L D   +        +            
Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L+NL   A      G       +          ++S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|309778817|ref|ZP_07673590.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
 gi|308922525|gb|EFP68149.1| sensory box histidine kinase/response regulator [Ralstonia sp.
           5_7_47FAA]
          Length = 683

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL+    ++ + +    +   + 
Sbjct: 293 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRGIEAIERSA 350

Query: 62  I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                     + ++   +G V   +       + +  +   + +A  K + +      + 
Sbjct: 351 RTQVHLIDDLLDMSAILSGKVPLEVGPVDLADVLERARETIEPMARQKNITIDTEFLPVP 410

Query: 111 LSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
           + +       ++  NL   A    P GG + +SV  S    + +++  G        P  
Sbjct: 411 MLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPSPEGVVATVRDTGIGIEPAFLPHI 470

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           F +    +           +       L   +  R+       D    ++  L 
Sbjct: 471 FDRFQQADLSNTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGTTMAVSLP 524


>gi|126649869|ref|ZP_01722105.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126593588|gb|EAZ87533.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 485

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 66/216 (30%), Gaps = 12/216 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIR 63
            ++++V  + + I H+I +P+ ++    +LL     ++  M L       +         
Sbjct: 249 QALNVVGQMAASIAHEIRNPLTSLKGFTDLLKINADDESRMYLSVIDSELQRMEQILSEL 308

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIE----DFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           L   + +      ++    +  + + +         + + + +              ++L
Sbjct: 309 LVLSKPSTMKVELLELDHIVKQVIEFMLPDALMKNIMIQYISIPNQVYIGGSENRLKQVL 368

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           +NL   A  S+  GG +T+ +  +       ++K  G           +      +    
Sbjct: 369 MNLIKNAMESMNNGGTITVEMTTNDCAIVELTIKDEGVGMDSTTL-QNLFQPFYTTKSTG 427

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +V  +  E+   +                 
Sbjct: 428 TGLGLAFVKKVIEEHDGVIGVNSELQKGTCFHLQFP 463


>gi|148654377|ref|YP_001274582.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566487|gb|ABQ88632.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 556

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 64/235 (27%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSM 58
            + I   + +        S I H++ +P+  I    E L       +     + + +   
Sbjct: 283 EQKIEAEMQNT-----FISVISHELRTPVSIIKGYAETLARQDAAWDAATLREGLMVIIE 337

Query: 59  SAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            A    + +      +                   +  + +            ++    +
Sbjct: 338 EADRLAQQINTLLEASRLQTDGMRLELSDWPVRPLVERVVERFMPQAGERFTFEIDIPDD 397

Query: 108 KIDLSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +  +   +L NL   A    P GG V I+ + S +  I S+   G    F E  
Sbjct: 398 LPPVHADYERTRTVLENLVSNAIKYSPNGGLVRIAARVSGDYAIISVSDQGIGIPFEEQK 457

Query: 163 -KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +  +   ++      R+  +         S  + 
Sbjct: 458 KLFRRFYRVDNRLRRETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRGSRFSFTVP 512


>gi|315187284|gb|EFU21040.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta thermophila DSM 6578]
          Length = 584

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
           + +N    L +  +     +  ++ H+I +P+  I  + E +       ++  ++  + Q
Sbjct: 347 LERNREKLLQAEKIATWQDIAQQLAHEIKNPLTPIRLAAERIRRKAEGVEDEALQRVLDQ 406

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVS 103
             ++         + +     ++   +  +   ++  ++                 +   
Sbjct: 407 STQIILHEVNRLTRLLEEFRDFSRLREPTLTPCNLRSLLSHILSSYDAPETPYRFHLDTP 466

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLA 158
                        + L NL   A  +     +          +D ++     ++  G+  
Sbjct: 467 EDIVIQADEEHLKQALGNLIQNAIDAGAGKEQTITVRLLRTSRDGRSYATIEIRDEGHGI 526

Query: 159 RFPEKFTQI-VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE   ++       +      +    V  +  ++  ++               L 
Sbjct: 527 --PEDQQRLVFLPYYTTKRQGTGLGLAIVQRIVLDHNGKIWFTSEVGKGSTFYIELP 581


>gi|298387781|ref|ZP_06997331.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259386|gb|EFI02260.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 419

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 63/229 (27%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60
                +S+  L +   + + H++ +P+ AI     L+        +     +I  ++   
Sbjct: 180 ERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMATATSEEEKKMYTDIISENNERL 239

Query: 61  IIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GE 107
           +  +  +                  D+   L ++E +    +  +  V +          
Sbjct: 240 LRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELEGLFGMRLNENPLVALVCEAHLEPIM 299

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +   ++L NL   A      G        +  +E  F +   G      E+  +I
Sbjct: 300 MHSEKQRIIQVLTNLLHNAMKFTKTGEIRFGCRMEGTDEVYFYVSDTGIGI-PKEEQEKI 358

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  +    +       + H    R   E           +L 
Sbjct: 359 FSRFTKLDREMQGTGLGLTLSQTIVHNFGGRFGVESEVGKGSTFWFILP 407


>gi|291619340|ref|YP_003522082.1| KdpD [Pantoea ananatis LMG 20103]
 gi|291154370|gb|ADD78954.1| KdpD [Pantoea ananatis LMG 20103]
          Length = 891

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 58/227 (25%), Gaps = 18/227 (7%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56
             +     L   L S + HD+ +P+  +    E+L                ++ +    +
Sbjct: 652 RLSAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASDNSKYVPQASQIREQTLST 711

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  L   R+  G     +       +              + V++    + + +  
Sbjct: 712 IRLVSNMLDMARIQSGGLNLREEWLALEEVIGGALSSMAPSLKGREVELDLPEDIVLIKG 771

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +     ++  NL   +           I           ++   G      +    F + 
Sbjct: 772 DSTLLERVFTNLIENSLKYAGNCAPRGIRAWCENTRLEIAIWDGGPGIAQNDLTRIFDKF 831

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             G+ ES +    +       +   +  ++  E   +        L 
Sbjct: 832 SRGDKESAVPGVGLGLAICKTIIESHGGQIWAENRAEGGACFRLSLP 878


>gi|229191724|ref|ZP_04318702.1| hypothetical protein bcere0002_33840 [Bacillus cereus ATCC 10876]
 gi|228591770|gb|EEK49611.1| hypothetical protein bcere0002_33840 [Bacillus cereus ATCC 10876]
          Length = 510

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500


>gi|218256903|ref|ZP_03474391.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225891|gb|EEC98541.1| hypothetical protein PRABACTJOHN_00043 [Parabacteroides johnsonii
           DSM 18315]
          Length = 529

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 56/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFN--LSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSM 58
            KNI       S  L ++  + + H+I +P+ AI     +L +    + +          
Sbjct: 289 QKNIELAKAQESNKLKSMFLANMSHEIRTPLNAIVGFSSILADMQEEDMDERHFYVDIIN 348

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------ 112
                L  +         +++      +++     I  +     +               
Sbjct: 349 KNSDLLLQLINDILDFSKIEAGTFDIHLKKFDFKEICEEIYAVHALKIPDHVCFSFNRDL 408

Query: 113 ---------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +   +++ N    A      G      + +       S+   G      E 
Sbjct: 409 PSVELNSDPKRLTQVISNFLTNAIKFTSDGEIKLDYLLEKDK-IYVSVTDTGIGI-SEEA 466

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I D  V   +      +       +  +   ++               L 
Sbjct: 467 CNNIFDRFVKLNTHKQGTGLGLSISKSIIEKLGGKIGVYSTLGKGSTFWFTLP 519


>gi|153005861|ref|YP_001380186.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152029434|gb|ABS27202.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 549

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 53/219 (24%), Gaps = 22/219 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRL- 69
            L + + HD+ +P+ AI      L              +  +I+ S+      +  +   
Sbjct: 330 QLLAVVSHDLRTPLSAIRMGAHRLRASAASAVPEALGAIADVIQRSAGRMERLIGDLLDV 389

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-----DLSRERAKI 118
                       S      L          +     V++                   ++
Sbjct: 390 AAVQAGRLTVDPSPRRPGELVREAVESMQSLVRGHGVELDVDAAPDLPLVLADHDRILQV 449

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--- 175
           L NL   A      GG++ +  +       F++   G      E   +I +         
Sbjct: 450 LGNLVSNAVKVTEAGGRIGVRAEPRAAAVRFAVSDTGPGIAPDEL-ERIFEPYRRGAGAT 508

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +  R+  E            L 
Sbjct: 509 YSGTGLGLAIARGIVEAHGGRIGVESAVGAGSTFWFTLP 547


>gi|319651215|ref|ZP_08005345.1| hypothetical protein HMPREF1013_01957 [Bacillus sp. 2_A_57_CT2]
 gi|317396995|gb|EFV77703.1| hypothetical protein HMPREF1013_01957 [Bacillus sp. 2_A_57_CT2]
          Length = 538

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICF----NLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL 55
           M +            M+ +  L + + H+I +P+  +   L++ L +  + +E    I+L
Sbjct: 306 MERTKILKELQRAEKMNAIGQLAASVAHEIRNPMTVVKGFLQIFLAKEEMTEEEKMYIKL 365

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW 104
                      +             +            +  +         +    ++S 
Sbjct: 366 MIDEMDRAETIINDYLSLAKPDIEQVEAINAGELAAGVIDLMNSYAMMSKNISVASEISE 425

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  + E  ++L+N++     ++  GG +++SV       +F +   G      E+ 
Sbjct: 426 GIWIQGNASELKQVLINIYKNGIEAMKNGGCLSLSVSTEGIYGVFEISDTGIGM-TREEM 484

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++             +       +    K R+          V    + 
Sbjct: 485 DRLGTAFYSLKEKGTGMGLLVCYQIVDRMKGRIEVNSEKGKGTVFRIFIP 534


>gi|290889604|ref|ZP_06552694.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429]
 gi|290480802|gb|EFD89436.1| hypothetical protein AWRIB429_0084 [Oenococcus oeni AWRIB429]
          Length = 619

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 62/228 (27%), Gaps = 30/228 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAF 71
             S + H++ +P+ ++++ +E L E  +  + +           +     +    + L+ 
Sbjct: 381 FVSNVSHELRTPLTSVNSYIETLQEGALTQKKIAREFLGVAHDETQRMIHMINDLLELSR 440

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------------- 114
              G         +  + I   +     +         D   +                 
Sbjct: 441 MDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDS 500

Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +++ N+   A    P GG + I + ++ +  I S+K +G      +          
Sbjct: 501 DKFMQVVDNVINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYR 560

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +       +      ++  E   +        L K
Sbjct: 561 VDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 608


>gi|257094403|ref|YP_003168044.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046927|gb|ACV36115.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 884

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 61/227 (26%), Gaps = 29/227 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   S + H+I +P+  I    E+L+   + +E  + +R  S +       +        
Sbjct: 364 SQFLSNMSHEIRTPLNGILGMAEVLERTPLNNEQARYLRAISSAGQALHGLLGDILDLAK 423

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRERAKIL 119
                I L DI+  +E  +                                      ++L
Sbjct: 424 IEAGKIVLEDIDFDLESLLVQLAETFRELASASGKSLTADFVGVARLCLRGDPTRLRQLL 483

Query: 120 LNLFMVAHASLPRGGKVTI------SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-- 171
            NL   A     RGG            +D++    FS++  G     PE   ++      
Sbjct: 484 SNLLTNAVKFTERGGITLNVVRLASRPEDARVWLRFSVRDTGIGI-APEAAARLFQPFVQ 542

Query: 172 ----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       L       +  +   +     +A L 
Sbjct: 543 ADQSTTRRFGGSGLGLVICKQLVELMGGSISVDSTVNQGSTFTAELP 589


>gi|225017491|ref|ZP_03706683.1| hypothetical protein CLOSTMETH_01418 [Clostridium methylpentosum
           DSM 5476]
 gi|224949730|gb|EEG30939.1| hypothetical protein CLOSTMETH_01418 [Clostridium methylpentosum
           DSM 5476]
          Length = 500

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 56/220 (25%), Gaps = 18/220 (8%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           +L   L + I HD+ +P+  I    E++ +       E +Q+I   +      +  +   
Sbjct: 278 ELRRELIANISHDLRTPLTMITAYSEVMRDLPGENTPENVQVIIDEARRLTTLVNDLLDI 337

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----------KIL 119
                    L               +     V   G  I    ++            +++
Sbjct: 338 SKIQSGAQELCLTEYNLTESIHTTLLRYSKLVENDGYHIRFVSDQEVFVQADESKLSQVI 397

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176
            NL   A     +   VTI      N     +   G+     E    + +    +     
Sbjct: 398 YNLINNAVTYTGKDKAVTIRQIVLGNAVRIEVADTGDGIPADELPYIWDRYYKVDKTHKR 457

Query: 177 D--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +   +  R     I          L 
Sbjct: 458 ARVGTGLGLSIVKAVLEMHGARYGVSSIPGQGSTFWFELP 497


>gi|254415827|ref|ZP_05029584.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177254|gb|EDX72261.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1218

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 65/233 (27%), Gaps = 24/233 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53
            +A+    N    +L +   S   H+  +P+  I +S ELL        E   +    ++ 
Sbjct: 988  LAREQELN----ELKSRFISMTSHEFRTPLTTILSSTELLKYYSSKFTEEKKQIHFERIQ 1043

Query: 54   RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                    +    + L     G +D      D+ Q  +  +   ++              
Sbjct: 1044 SNVHHITQMLNDILLLGKAEAGKLDFNPAQMDVRQFCQQLVEEFQQGIGHRHSLCFTHQG 1103

Query: 114  ER----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            +             IL NL   A    P    V + +    NE IF +K  G      + 
Sbjct: 1104 QLTPVSLDEKLLRHILGNLLSNALKYSPIDRPVCLELTCRHNELIFRIKDQGIGISETDQ 1163

Query: 163  --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F     G     I    +    V      +   +  E         + ++
Sbjct: 1164 QRLFESFHRGTNVGNISGTGLGLSIVKKAVDRHGGTINLESKLGVGTTFTVVI 1216


>gi|188587492|ref|YP_001919037.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352179|gb|ACB86449.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 75/245 (30%), Gaps = 40/245 (16%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
               L+ +     + + H++ +P+ ++ + +E L      +  I    +++++  +   +
Sbjct: 358 EQEKLIQMRQEFVANVSHELRTPLTSVKSYVETLLDGAHKDDEIAPRFLKVVQQETDRMV 417

Query: 62  IRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
             +K + +                  + + D      + +  D+++++    + ++    
Sbjct: 418 TMVKDLLVLSQLDRKEPIIECRDINFMDVLDRSISAIESLTKDQKIELHLDYKSLEGEYI 477

Query: 114 -----------------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                            +  ++  N+   A    P G  + I+V+D       S+K NG 
Sbjct: 478 DVFNEKPEFIRISGDSDKLTQVFTNILENAIKYSPSGEWIQITVEDYYENIKISVKDNGM 537

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                +   +I +                 +       +   +   +     +     + 
Sbjct: 538 GIPAEDLP-RIFERFYRVEKARSRARGGSGLGLAISREIIRNHGGDINVSSQEGRGTEVI 596

Query: 211 ALLEK 215
             L K
Sbjct: 597 VYLPK 601


>gi|218898733|ref|YP_002447144.1| sporulation kinase A [Bacillus cereus G9842]
 gi|228959824|ref|ZP_04121499.1| hypothetical protein bthur0005_32990 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|218544091|gb|ACK96485.1| sporulation kinase A [Bacillus cereus G9842]
 gi|228799954|gb|EEM46896.1| hypothetical protein bthur0005_32990 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 510

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500


>gi|156741161|ref|YP_001431290.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156232489|gb|ABU57272.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 359

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+ +            L   + H++ +P+  +   LE L +     + E +  ++    
Sbjct: 117 MAEALA---QVEQQRVTLIGNVAHELRTPLAGLEGYLEGLLDGVLPGDPETISAMQHEVR 173

Query: 59  SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTG 106
                +  ++             +   D +  +  I   +   +                
Sbjct: 174 RLRRLVDDLQHLSRVEAGQMPLQSQVFDLVALVQRIVAQLRPQLIEQCLEIAVEAPDRAV 233

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                    A++L+NL   A    P  G +T+ V+        +++  G        P  
Sbjct: 234 LAYADPDRTAQVLVNLVGNAIRYTPEDGCITLRVRSEVEHVQVAVEDTGIGIPAEALPYL 293

Query: 164 FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
           F +      +         I       LA      +           V +  L +
Sbjct: 294 FERFYRVDPSRSRASGGSGIGLTIARHLARAMGGEITATSPGIGQGSVFTLTLPR 348


>gi|156743358|ref|YP_001433487.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234686|gb|ABU59469.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 899

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 63/218 (28%), Gaps = 24/218 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF------- 66
           + + H++ SP+  I+  ++LL         G + ++++ +R         +K        
Sbjct: 664 ATVSHELRSPLTVIYGYVDLLLRGLVGELSGDQYDLLEAVRNRVELMNNIVKNVILVASI 723

Query: 67  -MRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL---N 121
                       D    + +    + + F      + V+   +   +  +R ++++    
Sbjct: 724 EANTLQTDLAPQDVRRLIDETIAPMRKAFERKGLTLTVNTPDDLPPVRADREQLMIILGQ 783

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A    P+G     + +         +   G      ++  ++           S  
Sbjct: 784 VIDNARRYTPQGEVAITAHRRDDGMVQIDVADTGPGI-PADQMPRLFTRFFRVEGNNSPE 842

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       L   +  ++  +         S  L 
Sbjct: 843 RGSGLGLVITRQLVERHGGKVWAQSEVGRGSTFSIALP 880


>gi|116490222|ref|YP_809766.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus
           oeni PSU-1]
 gi|116090947|gb|ABJ56101.1| PAS/PAC sensor signal transduction histidine kinase [Oenococcus
           oeni PSU-1]
          Length = 633

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 62/228 (27%), Gaps = 30/228 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IRLSSMSAIIRLKFMRLAF 71
             S + H++ +P+ ++++ +E L E  +  + +           +     +    + L+ 
Sbjct: 395 FVSNVSHELRTPLTSVNSYIETLQEGALTQKKIAREFLGVAHDETQRMIHMINDLLELSR 454

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------------- 114
              G         +  + I   +     +         D   +                 
Sbjct: 455 MDQGRTKMDTEAVNFTKFINYVLDRFDVMFKQGHSMHSDNHYKIIRNYDQKKSCYVEIDS 514

Query: 115 --RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +++ N+   A    P GG + I + ++ +  I S+K +G      +          
Sbjct: 515 DKFMQVVDNVINNAINYSPDGGNIEIGINETDDSIILSIKDHGLGIPKKDLENVFTRFYR 574

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +       +      ++  E   +        L K
Sbjct: 575 VDKSRARKQGGTGLGLAISKEVVEALHGKIRVESTVNVGTTFFISLPK 622


>gi|148657916|ref|YP_001278121.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
 gi|148570026|gb|ABQ92171.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 392

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 53/235 (22%), Gaps = 38/235 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG-- 75
           L + + H++ +P+ ++   +E L          +++   +       + +          
Sbjct: 156 LVANVSHELRTPLASMKLLVETLQSDPPPPVAKRMLDQIAQEVDAITQLVEELHELAQIE 215

Query: 76  ---------SVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNL 122
                           +    + I   +                + +       ++LLNL
Sbjct: 216 SGRVALQLVPAPLAPLVARTIERIRPQMDRKHLQMTTDVPDDLPQALIDCNRVGQVLLNL 275

Query: 123 FMVAHASLPRGGK------------------VTISVQDSKNENIFSLKINGNLARFPE-- 162
              A    P GG                               + S+  NG      +  
Sbjct: 276 LHNASKFTPEGGCVSIAARVITVGDGSPPPPGLPPSHAPGQWLLLSVTDNGIGIPATDLS 335

Query: 163 -KFTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    D           +       L   +  R+    I+         L 
Sbjct: 336 RIFERFYKVDRARTRNAGGTGLGLAIAKHLVEGHGGRIWATSIEGEGSTFYLTLP 390


>gi|55981472|ref|YP_144769.1| sensor histidine kinase [Thermus thermophilus HB8]
 gi|55772885|dbj|BAD71326.1| sensor histidine kinase [Thermus thermophilus HB8]
          Length = 468

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 57/207 (27%), Gaps = 17/207 (8%)

Query: 23  CHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSSMSAIIRLK---------FMRLAFG 72
            H++ +PI AI   +  LL    + +   + + +    A    K                
Sbjct: 255 SHELRTPITAILGHVGYLLRRTPLTEAQRESLEVVKREAERMGKLVSDLLDLSQSGAWRI 314

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
               V  L  L ++ +        +  V+       +       +++ NL   A  +  R
Sbjct: 315 RPVPVRVLDLLEEVREEFAKSFDGEILVEAPEDLYVLGDPDRLHQVMANLVSNALKAGAR 374

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SHDIQFYYVI 187
              +        ++ +  ++ +G        P  F +    +     +     +    V 
Sbjct: 375 HVWLRAFDL--GDKAVVRVEDDGEGIPEEHLPHLFERFYRVDKARDRERGGSGLGLAIVK 432

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +   +  E         S  L 
Sbjct: 433 AILEAHGGEVWVESQVGKGTAFSFSLP 459


>gi|332702880|ref|ZP_08422968.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553029|gb|EGJ50073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 558

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 59/254 (23%), Gaps = 41/254 (16%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L      A   SR        I H+I +P+  I   +EL      + +  + +
Sbjct: 155 RKKAEDELKQAKEAAESASRTKSEFLANISHEIRTPMNGIIGMVELALLTASDVQTREYL 214

Query: 54  RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
                S +                     + L       +             E  + + 
Sbjct: 215 GFIKQSGLALLNIINDILDFSKIEAGRLQLDLREFDPRHMVETTLRPLSYMAKEKDLPLR 274

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIF 149
             +                ++L N+   A     RG  V    +            + +F
Sbjct: 275 WSIDPDVPERLAGDQGRIRQVLTNVVGNAIKFTERGSVVVRVDRTEPEGLAGGESVQLLF 334

Query: 150 SLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
           S++  G      +K  +I +                 +       L      R+  E   
Sbjct: 335 SVRDTGIGI-PADKQEKIFESFSQVGTSAHMKYGGAGLGLSISRQLVEMMGGRIWVESDP 393

Query: 204 DHNVV--LSALLEK 215
                   +  L +
Sbjct: 394 GKGSTFHFTVRLSR 407


>gi|328953464|ref|YP_004370798.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453788|gb|AEB09617.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 740

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 76/240 (31%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLI 53
           MA+ +   L  +  L +L  L + + H+I +P+  I    ++L E       + +++Q I
Sbjct: 491 MARKMEEQLYFTEKLASLGQLAAGVAHEINNPLAIILGYTDMLLEKTEADSKQYKILQTI 550

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEK 108
                +    ++ +         V     +    ++                Q+      
Sbjct: 551 ERQGNNCKRIVENLMTFARAPEEVQHDTDVNRNIEMVLEVVRNTLFTRKIEYQLELEERL 610

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEK 163
             ++ +     ++ LNL   A  ++P GG++TI+ +   +  E        G      E 
Sbjct: 611 PRVNGDAAQLQQVFLNLITNAVKAMPEGGRLTIATRSLKNGAEVQILFIDTGVGI-KKEH 669

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI-------IDDHNVVLSALLE 214
             +I D    +    +   +       +  +    +            ++     +  L 
Sbjct: 670 LPKIYDPFFTTRKVGEGTGLGLSVSYGIITKFGGSINCVSKAQEEVGKEESGSTFTITLP 729


>gi|323494554|ref|ZP_08099658.1| nitrogen regulation protein NR(II) [Vibrio brasiliensis LMG 20546]
 gi|323311157|gb|EGA64317.1| nitrogen regulation protein NR(II) [Vibrio brasiliensis LMG 20546]
          Length = 348

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+    +  + +  ++    A
Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERTLPDPSLAEYTQIIIEQA 175

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +         G     +  + L  + Q+++        ++  +     ++  + 
Sbjct: 176 DRLRALVDRLLGPQKPGKKQPENLHLILEKVRQLVDLEANQSVSIERDYDPSLPEILMDS 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 236 DQIEQALLNIVSNAGQILKGQQNGEIVIRTRTVHQANIHGQRCKLAARIEITDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V        +       L  +++ ++  E         +  L 
Sbjct: 295 ADLQDTLFYPMVSGREGGTGLGLSIAQNLIDQHQGKIDVESWPGR-TTFTIYLP 347


>gi|298387105|ref|ZP_06996659.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298260255|gb|EFI03125.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1354

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I  +++ + + S     +
Sbjct: 817  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYHKILGIYKNSLQLREL 874

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  + S   E    
Sbjct: 875  ITELLDFRKQEQGHMKIKVSRHNLVNFLYENYLLFLEYASSKQINFKFNKQSDDIEVWYD 934

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V       I  +K  G      E         
Sbjct: 935  QKQMQKVVNNLLSNALKHTKAEDTISINVSQEDKYVIIEIKDTGTGIAAAEIDKIFDRFY 994

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +D         I       +   +   +  E            L+
Sbjct: 995  QTERLDSLNTGAGTGIGLALTKGIIELHHGTIRVESEPGKGSRFIITLK 1043


>gi|298249702|ref|ZP_06973506.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547706|gb|EFH81573.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 520

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 24/232 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           +    L  +       S + H++ +P+ +I    +LL +     +  Q +   +      
Sbjct: 276 SERKRLEQLK--DNFISMVSHELKTPVTSIKGYTQLLQKHFQRSDEKQSLYFLAKMNYQL 333

Query: 64  LK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEK 108
            K               + +        D +  + +  +  +   A  K +++       
Sbjct: 334 DKLTDLINEILSISQLDLGMLNLRPKVFDLVEVVREELESQQATTATHKLQLKGVEKLTI 393

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   +++ +L   A    P   +V I +  S    +  ++  G      E F+++ 
Sbjct: 394 TGDCERIGQVIHHLVSNAIKYSPGRKQVCIEICHSDQAALIHIQDYGIGI-DSEHFSRLF 452

Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           T     I  Y    +   ++  +  E         S  L 
Sbjct: 453 ERFYRVDEPLEQTFPGLGIGLYLAHEIIQRHQGHIWVESQKGQGSTFSFSLP 504


>gi|296449313|ref|ZP_06891096.1| sensor histidine kinase KdpD [Clostridium difficile NAP08]
 gi|296880755|ref|ZP_06904705.1| sensor histidine kinase [Clostridium difficile NAP07]
 gi|296261840|gb|EFH08652.1| sensor histidine kinase KdpD [Clostridium difficile NAP08]
 gi|296428250|gb|EFH14147.1| sensor histidine kinase [Clostridium difficile NAP07]
          Length = 535

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 64/233 (27%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGIE 46
           K          L   L   I HD+ +P+ +I  S                +ELL  +  +
Sbjct: 292 KKANLEAERERLRGNLLRSISHDLRTPLTSILGSSSTILENDDVIDKETRVELLKNIYED 351

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +     + +S     +           VD +I    +           K        
Sbjct: 352 TSWLTHSVENILSMTRIDEGKLDIEKRPEVVDEIIAESILRVKKFANSRDIKTNIPDEII 411

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     ++L+NL   A    P+  K+ ++V+   ++ +F +  NG      +    
Sbjct: 412 IVHVDVLLIEQVLVNLIDNAIRHTPKNSKIELTVKKESSQVLFEVADNGKGIPNEDIGNI 471

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    N    ++     +       +   +   ++              + 
Sbjct: 472 FNRFYTKNKSRNLERRGIGLGLEICKSIVEAHGGEIVAFNNPSGGATFRFSIP 524


>gi|288940464|ref|YP_003442704.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288895836|gb|ADC61672.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 963

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------------- 47
           + +     L + +  +   + + H++ +P+ AI    ++LD   ++              
Sbjct: 579 LEEARNAALQASEAKSRFLAHMSHELRTPLNAIIGFSQMLDMGALDPLTAQQQTAVSHIR 638

Query: 48  ----EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +++LI      A I      L          +  +  + +   D   +       
Sbjct: 639 DSGRHLLELINDILDLARIESGQSELNLDAIPLDPLIDEVMALSRPAADGRRICIDRGGE 698

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++LLNL   A      GG+VTI V+ +       +   G        
Sbjct: 699 AGLHVYADRTRLRQVLLNLTSNAIKYNRLGGRVTIDVEPAGEWVRIRVSDTGAGIDES-L 757

Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +I           + I+   I       L       +  + +          L
Sbjct: 758 REEIFQPFQRLGAEKTAIEGTGIGLIICKHLIEVMGGSIDFDSVPGQGSRFWFEL 812


>gi|254436808|ref|ZP_05050302.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198252254|gb|EDY76568.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 716

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 32/243 (13%)

Query: 3   KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
           KN+    + S  + A+  L   + HD  + + AI    +LL    D+   +   +  IR 
Sbjct: 332 KNLEMQFVQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDGDYADLVQIRQ 391

Query: 56  SSMSAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +S  A   +  +              D    L D   ++   +     + +        +
Sbjct: 392 NSNRAAALVGQLLAYSRKQNLQPEVLDLRNTLSDSTHLLNRLVGERVTLTLDHNPRLSQI 451

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQD---------------SKNENIFSLKI 153
             ++ ++   L      A  ++  GG + I  ++                       +  
Sbjct: 452 RADKRQLEQVLMNLVVNARDAMTDGGNIRIETENTVLGEGLSRDRVTVPPGRYVELRVHD 511

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      +K  +I +    +    +   +       +  +    +  +         S 
Sbjct: 512 TGTGI-PEDKREKIFEPFWTTKKTGEGTGLGLSTAYGIIKQTGGYIFVDSTIGVGTTFSI 570

Query: 212 LLE 214
           L+ 
Sbjct: 571 LIP 573


>gi|189465320|ref|ZP_03014105.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
 gi|189437594|gb|EDV06579.1| hypothetical protein BACINT_01668 [Bacteroides intestinalis DSM
           17393]
          Length = 381

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 62/231 (26%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
           A+    N        L  + + H+I +P+ AI    ELL        + + ++++  ++ 
Sbjct: 135 AREKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLASASTEEEKTQFLEIVHSNNE 192

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------W 104
                +                    VD    + DIEQ+    +     V          
Sbjct: 193 LLQQLIADILDLSKIEAGTLEFTFSEVDVKQLMLDIEQLFRMRLEDKAAVIQIIRETPAD 252

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +++ N    A      G       + ++    F +K  G+     +  
Sbjct: 253 ECIMYTDRNRLQQVVSNFMTNAVKFTDEGSITFGYNRCAEG-LYFYVKDTGSGIPEDKVN 311

Query: 165 TQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   VE       +      ++  +   ++  E           +L 
Sbjct: 312 HIFERFVRVEQNKKGTGLGLAICEMIIRKLGGKIGVESEYGKGSTFWFILP 362


>gi|220919452|ref|YP_002494756.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219957306|gb|ACL67690.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 687

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 68/249 (27%), Gaps = 37/249 (14%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43
            K +   L+ +  +V++  L + + H++ +P+  +  +L  LDE                
Sbjct: 292 RKQLHARLALADRMVSVGTLAAGVAHELNNPLAYVIANLSYLDEQLTVLAPRVAAAGSSR 351

Query: 44  ---------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
                        +         +       F R    + G V     L     V  + I
Sbjct: 352 EPDLASALLDAVHDARDGAERMRIIVRDLKTFSRPDEEHAGPVSLGPLLDSCVSVAWNEI 411

Query: 95  AVDKRV--QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNEN 147
               R+    +             ++ LNL + A  ++P G      +Q         + 
Sbjct: 412 RHRARLLRAPTDVPPIQGCQARLGQVFLNLLVNAAQAIPEGHVDEHQIQVSARALPGGQV 471

Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDH 205
              +   G+    PE   +I D    +        +       +       +  E +   
Sbjct: 472 AVEVSDTGSGI-APEHLPRIFDPFFTTKPPGVGTGLGLSICQSIVSAMGGEIQVETMLGR 530

Query: 206 NVVLSALLE 214
                 +L 
Sbjct: 531 GTTFRVILP 539


>gi|149191397|ref|ZP_01869648.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
 gi|148834746|gb|EDL51732.1| RscS; sensor kinase protein [Vibrio shilonii AK1]
          Length = 836

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 17/242 (7%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + + +   + + D          + + H+I +P+  +   ++++     + +  + + L 
Sbjct: 445 LQRKLENAVVAADSANIAKTQFLATMSHEIRTPMNGVLGMVQVMLSEAKDKQQKENLSLI 504

Query: 57  SMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAV-----DKRV 100
             S    +  +                 +   +    +  +    +          +   
Sbjct: 505 LESGNHLISILNDILDLTKVEQNKIELESCPFNIEQIIAPLRSTYQAVCQEKGIELNIEC 564

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLA 158
            +      +       +++ NL   A     R     V  +   + +   FS++ +G   
Sbjct: 565 HIDANMTFLGDRNRVRQVMYNLLNNAIKFTERGGVTVVITNNPTTPSLLRFSVQDSGIGI 624

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  +I +                 +    V  L  +    +               
Sbjct: 625 ETSAL-ERIFEPFVQADASTTREYGGTGLGLAIVKQLVEKMGGTIDATSEQGQGTRFEFE 683

Query: 213 LE 214
           ++
Sbjct: 684 IK 685


>gi|126732976|ref|ZP_01748737.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126706593|gb|EBA05669.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 740

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 60/234 (25%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+        +    L  + + H+I +P+  I    ELL++  +  E   +    S SA+
Sbjct: 210 ARKRAEEAERIKSAFL--ANMSHEIRTPMNGIIAMSELLEQGTLNPEQRSMTSTISSSAV 267

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105
             L  +     ++      + +        + +     +                 +   
Sbjct: 268 ALLAIINDILDFSKIEAGKMLVHAEPFDPINLVEEVATLFSPAAAAKGVEICVESVLEMP 327

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +  S    + LLN+   A      G       +    + +  +   G      +   
Sbjct: 328 LMVMGDSARLRQCLLNVIGNAVKFTATGNVHIWLNRSEDGQIVVKVTDTGVGIAEDKLDH 387

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +          D   +     + L       L      D   V    L 
Sbjct: 388 IFEEFSQIDSTHTRRYDGTGLGLAISLRLIRLMGGSLSARSRPDEGSVFEMRLP 441


>gi|52141898|ref|YP_084929.1| sporulation kinase A [Bacillus cereus E33L]
 gi|196038501|ref|ZP_03105810.1| sporulation kinase A [Bacillus cereus NVH0597-99]
 gi|51975367|gb|AAU16917.1| possible sporulation kinase A [Bacillus cereus E33L]
 gi|196030909|gb|EDX69507.1| sporulation kinase A [Bacillus cereus NVH0597-99]
          Length = 510

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|29348743|ref|NP_812246.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|29340649|gb|AAO78440.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
          Length = 1354

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I  +++ + + S     +
Sbjct: 817  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYHKILGIYKNSLQLREL 874

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  + S   E    
Sbjct: 875  ITELLDFRKQEQGHMKIKVSRHNLVNFLYENYLLFLEYASSKQINFKFNKQSDDIEVWYD 934

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V       I  +K  G      E         
Sbjct: 935  QKQMQKVVNNLLSNALKHTKAEDTISINVSQEDKYVIIEIKDTGTGIAAAEIDKIFDRFY 994

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +D         I       +   +   +  E            L+
Sbjct: 995  QTERLDSLNTGAGTGIGLALTKGIIELHHGTIRVESEPGKGSRFIITLK 1043


>gi|307292787|ref|ZP_07572633.1| multi-sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|306880853|gb|EFN12069.1| multi-sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 750

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 28/237 (11%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           +I   LS     A   +  RI H+I +P+  I  + E L           +    +L   
Sbjct: 487 DITQQLSDQRRAAWSDVARRIAHEIKNPLTPIQLAAERLQRRYAGEVTSDKATFTRLTGT 546

Query: 56  SSMSAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                    + +     +            VD +         +       +   V    
Sbjct: 547 IVRQVGDLRRIVDEFSSFARMPKPVFRRERVDDIARHALFLHEVAHPDIRFEYHSVDADV 606

Query: 107 EKIDLSRERAKILLNLFMVAHASL---------PRGGKVTISVQDSKNENIFSLKINGNL 157
           E +   R+  + L N+   A  ++            G V ++V+  +      ++ NG  
Sbjct: 607 EMVCDRRQLGQALTNIVKNAVEAIEPKPAADDGQWRGHVCMTVEHDEGHLQIEVRDNGIG 666

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +I++  + +      +    V  +  E+   +  +  +     ++    
Sbjct: 667 LPPE--RERILEPYMTTRTKGTGLGLAIVKKIVEEHMGEIRFDDAEGGGARVTLRFP 721


>gi|291484739|dbj|BAI85814.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 589

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +          E+ Q+I  
Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410

Query: 56  SSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S+     +  +                    +      +     V ++     +     
Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALQNDISL 470

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E +    +  ++  NL   A      GG V+ISV   K+     +K +G+     + 
Sbjct: 471 TEEEFMLDEDKMEQVFTNLIDNALRHTSSGGSVSISVHSVKDGLKIDIKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +   +      D     +  + 
Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFTFYIP 586


>gi|288554259|ref|YP_003426194.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288545419|gb|ADC49302.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 471

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 17/215 (7%), Positives = 59/215 (27%), Gaps = 22/215 (10%)

Query: 22  ICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           I H++ +P+      +E+L          + + + L+   S      ++ +         
Sbjct: 248 ISHELRTPLTYFKGYVEILLNGEAKSEEDKVKYLTLLYKQSGRLQRLIQDLFDLSTMEQK 307

Query: 77  ---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM--- 124
                        + +  ++ +       +  + V  +   I +  +  ++   +     
Sbjct: 308 GFTLQETQISLETVMINALDLIGPSIEQKEIELHVQLSPFPIYILGDEYRLQQVIINLLE 367

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VESTIDSH 179
            A      GG + +      N  I  +   G      +    + ++   +          
Sbjct: 368 NAKKYSSAGGVIKVLTYKDNNNCIIEVIDYGIGIPKKDIHRIWERLYRVDKSRSRETGGS 427

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       +   +  +++ E  +        +L 
Sbjct: 428 GLGLTICKRIIELHGGQIIVESEEGKGSTFKIILP 462


>gi|75909568|ref|YP_323864.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703293|gb|ABA22969.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 575

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 19/246 (7%), Positives = 63/246 (25%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53
           + +      ++    ++  + + H++ +P+ A+    +LL +   +          ++ I
Sbjct: 325 LEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDDAADLSLSGEFTSDLETI 384

Query: 54  RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101
             +    +  +                Y    D +  + ++   ++  I  +  +     
Sbjct: 385 NSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVLTVKPTIEKNNNILEIYC 444

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--------NIFSLKI 153
               G          ++LLNL   A      G       ++ ++           F++  
Sbjct: 445 DEHLGTMYADQTRMRQVLLNLLSNAAKFTTNGSIKLTVRREKEDFLAEMPFGAISFTVSD 504

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      ++                      +               ++ +        
Sbjct: 505 TGIGMSPSQQLQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEIIVKSQPGLGST 564

Query: 209 LSALLE 214
            +  L 
Sbjct: 565 FTVYLP 570


>gi|25029049|ref|NP_739103.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|23494336|dbj|BAC19303.1| putative sensor kinase [Corynebacterium efficiens YS-314]
          Length = 475

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 60/242 (24%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCS------------RICHDIISPIGAIHNSLELLDEVGIEDE 48
           +A  +   L  +   ++L +               H++ +P+ ++    EL       D 
Sbjct: 230 LANALNIMLEQLQ-ASILSAQEKESQMRRFVGDASHELRTPLTSVKGYSELYHSGATRDA 288

Query: 49  V--MQLIRLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
              +  I   +    + ++ +               VD L     +   +          
Sbjct: 289 DWVLSKISGEAQRMSVLVEDLLSLTRAEGQQMEKRPVDVLELSLSVASSMRAAWPERSIT 348

Query: 101 QVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            V+ TG    +  +     ++L NL             V I +       +  +  +G  
Sbjct: 349 VVNKTGSLPVVEGDATRLHQVLTNLVNNGLNHGGPDASVEIEISAEGGSVLVRVVDDGVG 408

Query: 158 ARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +       L   ++  +  +       V +  
Sbjct: 409 MTAEDAQHIFERFYRTDTSRSRASGGSGLGLAITKSLVEGHRGTITVDSEVGEGTVFTIT 468

Query: 213 LE 214
           L 
Sbjct: 469 LP 470


>gi|87310341|ref|ZP_01092471.1| PAS/PAC sensor signal transduction histidine kinase
           [Blastopirellula marina DSM 3645]
 gi|87286840|gb|EAQ78744.1| PAS/PAC sensor signal transduction histidine kinase
           [Blastopirellula marina DSM 3645]
          Length = 588

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 57/227 (25%), Gaps = 24/227 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            ++     S + H++ +P+ A+    E L     +++      +  I  S+      ++ 
Sbjct: 362 ENMRREFVSSVSHELKTPLAAVRAYTETLQLGAIEDIENRGYFLSQIMDSADRLHELIQD 421

Query: 67  MRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           M          +                L     V        +          +     
Sbjct: 422 MLHLARIESREEAFDITEVPIADVIENVLQVQRDVAASRQIALRIHPPEVEISVLGDEEG 481

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              IL NL   A    P GG V ++     +    ++K  G          +I +     
Sbjct: 482 VRTILGNLIDNAMKYTPEGGSVDVAWGLEGSHVAITVKDTGLGIPQAAL-ERIFERFFRV 540

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +    +    V   A      +  E         +  L +
Sbjct: 541 DKARSREMGGTGLGLSIVKHTAQAMNGGVTVESQVGEGSKFTVRLPR 587


>gi|309789683|ref|ZP_07684263.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228169|gb|EFO81817.1| multi-sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 526

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 50/234 (21%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMS 59
           +++       +L     S I H++ +P+  I      L             + + +    
Sbjct: 282 RDVTAQRREAELQNTFISVISHELKTPVSIIKGYASTLARTDATFSPDMLREGLTVIEEE 341

Query: 60  AIIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           A    + ++                         +  +        +     +       
Sbjct: 342 ADRLARQIQDLLDVSRLAAGGARLDRCDFALSSLVADVVRSFAAQVEGHFEFELRLADDM 401

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L NL   A    P GG + I  +      +  +   G      E   
Sbjct: 402 PPIHGDYERLRQVLSNLISNAIKYSPEGGTIRIGARAEAERAVVYVADQGIGIAPEEHEQ 461

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +  Y    +   +  R+  E            L 
Sbjct: 462 IFQRFYRVDNRLRRQTQGSGLGLYLARAIIEAHGGRIWVESQLGRGARFLFTLP 515


>gi|297537877|ref|YP_003673646.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
 gi|297257224|gb|ADI29069.1| multi-sensor hybrid histidine kinase [Methylotenera sp. 301]
          Length = 1239

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK+     +S    A   + + H+I +P+ AI    E++ +  ++DE  + +   + SA
Sbjct: 647 LAKDKAEQAASAK--ATFLANMSHEIRTPMNAIIGFSEIMMDTEMQDEQRRYMNTINNSA 704

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEK 108
              L  +             + L  ++             +       +  +Q+      
Sbjct: 705 KSLLHLLNDILDSAKLEKGKLELEIVDFSLYELVDSIVSTLWVQAKRKNLDLQLELDPNT 764

Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +IL+NL   +      G    +  Q   +E  FS+   G      ++ 
Sbjct: 765 ASYYLGAPDRIRQILMNLLGNSIKFTEHGYVKLVVKQLDNHELSFSIIDTGIGI-PQDRL 823

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +        +        +       L      RL  +         + +L 
Sbjct: 824 DVIFEPFTQADSSMSRKFGGTGLGTTISKQLVELMGGRLTAKSEIGSGSCFTMILP 879


>gi|153011100|ref|YP_001372314.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151562988|gb|ABS16485.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 912

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRL 55
           +       +  L + L + I HD+ +P+ AI  +   L        +    D V  ++  
Sbjct: 670 ERAKLAAEADKLRSALLTSISHDLKTPLAAILGAATTLRDYSSSLPDTDRSDLVATVVDQ 729

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------G 106
           S          + +     G++   + L  +  +I   +    ++ V             
Sbjct: 730 SERLNRFIANLLDMTRIEAGAMKPNLSLHYVGDLIGAALNRAAKILVHHQVNIAVPADLP 789

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +    ++L NLF  A    P    +TI    + +     +   G      +    
Sbjct: 790 MVQLDAVLFEQVLFNLFDNAAKYAPENTPITIKAHAAPSRITLEISDRGPGIPPGDLERV 849

Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                     D       +               +      +    V +  L 
Sbjct: 850 FDTFYRVRKGDHVQAGTGLGLSIARGFIEAMGGSIRAGNRHEGTGAVFTIALP 902


>gi|254242148|ref|ZP_04935470.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
 gi|126195526|gb|EAZ59589.1| hypothetical protein PA2G_02877 [Pseudomonas aeruginosa 2192]
          Length = 918

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
             +  +     Y               D    L D   +        +            
Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKINGNLARFP 161
                      ++L+NL   A      G       +           +S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|254236414|ref|ZP_04929737.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
 gi|126168345|gb|EAZ53856.1| hypothetical protein PACG_02396 [Pseudomonas aeruginosa C3719]
          Length = 918

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
             +  +     Y               D    L D   +        +            
Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKINGNLARFP 161
                      ++L+NL   A      G       +           +S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGHERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1334

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69
             I H+  +P+  I + LE+L E      +    +  I  +++     +  +       + 
Sbjct: 821  NISHEFRTPLTLIVSQLEMLMERSDIQPLVYSKLVNIHRNTLRMKRLITELLDFRKQEQG 880

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLNLFM 124
               +  S   +    D   +     A  K++ + +       E      +  K++ NL  
Sbjct: 881  FEKFKYSKQDIYAFLDEIYLSFKEYARGKQINLEFLNKDKNLEVWFDVVQLEKVIYNLLS 940

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181
             A    P GG +++SVQ+ +N  + ++   G         + F +    +  +      I
Sbjct: 941  NAFKYTPLGGTISLSVQEYENSVVVTVSDTGVGIAEESLDKIFDRFYQVDSMNNQKGTGI 1000

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +K ++    ++         L 
Sbjct: 1001 GLALAKSIIEAHKGKISVRSMEGKGTTFVVELP 1033


>gi|260220991|emb|CBA29109.1| Phosphate regulon sensor protein phoR [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 420

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 61/237 (25%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           ++++I     +  +     + + H+I +P+  +   +E L     +       + L+   
Sbjct: 176 LSRDITALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQTLPLDESERQSYLNLMSQQ 235

Query: 57  SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           +      +  +                       +            +      D +  V
Sbjct: 236 ATRMQSLVNDLLTLSRLEGSPAPSGSDLVDMVQLLQQCKQEAHNLSSLVWGKPQDIQFLV 295

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           S          E    + NL   A    P          + ++ E   S++  G     P
Sbjct: 296 SDAVAVTGSPSELHSAVFNLIGNAIRYTPADKSIRVHWHKTAEGEGELSVQDTGPGI-AP 354

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   ++ +                 +    V  +A  +   LL E I       +  
Sbjct: 355 EHIPRLTERFYRVDRSRSRDTGGTGLGLAIVKHVAQRHGAELLIESIPGRGSTFTLR 411


>gi|218781801|ref|YP_002433119.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763185|gb|ACL05651.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 681

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 30/242 (12%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54
           +N+   L  S  L A+  L   I HD  + +  +  + EL       +    + ++++  
Sbjct: 289 RNMQRRLSQSHKLEAIGTLAGGIAHDFNNLLSVVLGNAELAVSDTPHDSPAAESLLEIQS 348

Query: 55  LSSMSA---IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +       L+F +        VD +  + +  + +   I     +QV     K  +
Sbjct: 349 AGMRARDVVRQLLEFAKPEGKRKQLVDFIGIVQESIRFLRATIPSTVDIQVKILINKAPV 408

Query: 112 SRER---AKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKI 153
             +     ++++NL   A  ++                 G                S+  
Sbjct: 409 MADPSNLYQVMINLCTNAAHAMAGRGGVLGVNVARHESNGEDPDFFALAPGEYVRLSVSD 468

Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G       +            +     +    V  +   +  R+  E   +     + +
Sbjct: 469 TGIGMDAQTQNKIFDPYFTTRDVGEGAGMGLAVVHGILETHGGRIHVESEPEKGSTFTVV 528

Query: 213 LE 214
             
Sbjct: 529 FP 530


>gi|70731413|ref|YP_261154.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68345712|gb|AAY93318.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 815

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 65/242 (26%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + K       +  + A+  L   + HD  + +  I +S +LL            ++ I  
Sbjct: 432 LRKTEDILRQAQKMEAVGQLTGGVAHDFNNLLTVIRSSTDLLRRNLSEERRQLYIKAISD 491

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTGEKIDL 111
           +   A      +               +G   Q    +I   I     +++    +   +
Sbjct: 492 TVDRASKLTGQLLAYARQQNLRPETFDVGASVQLLAQMINPLIGACIELRIELPQQPCYI 551

Query: 112 SRERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKING 155
             +  +    L+N+ + A  ++              +          + +    SL   G
Sbjct: 552 HADAGQFDTALINMAVNARDAMQGEGLLVVAVERVAQIPPSASQGAQAGDFVAVSLTDTG 611

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +   +I +    +        +    V   A ++   L            +  L
Sbjct: 612 AGIDPQQI-ERIFEPFFTTKEVGKGTGLGLSQVFGFAQQSGGGLAVHSQPGQGTCFTLYL 670

Query: 214 EK 215
            +
Sbjct: 671 PR 672


>gi|110634091|ref|YP_674299.1| multi-sensor hybrid histidine kinase / cell cycle control histidine
           kinase CckA [Mesorhizobium sp. BNC1]
 gi|110285075|gb|ABG63134.1| cell cycle control histidine kinase CckA [Chelativorans sp. BNC1]
          Length = 866

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 72/245 (29%), Gaps = 32/245 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            K +   +  S  + A+  L   I HD  + + AI  + +LL             +  I+
Sbjct: 462 QKALEAQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMASDLLLTNHRPSDPSFPDIMNIK 521

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            ++  A   ++ +            ++ L D+   I   ++      VS + E       
Sbjct: 522 QNANRAASLVRQLLAFSRRQTLRPEVLNLTDVLADIRMLLSRLVGNDVSLSVEHGQDLWP 581

Query: 114 ------ERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152
                 +  ++++NL + A  ++P                  K         +  +  ++
Sbjct: 582 VKADIGQFEQVIVNLAVNARDAMPEGGQLKIRTRNVTAEDCAKYPYRELQPADYVVVEVE 641

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G     P+   +I +    +        +    V  +  +    +  +          
Sbjct: 642 DTGTGI-APDVQKKIFEPFFTTKEVGKGTGLGLSMVYGIVKQTGGFIYCDSEVGKGTTFR 700

Query: 211 ALLEK 215
             L +
Sbjct: 701 IFLPR 705


>gi|302338730|ref|YP_003803936.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301635915|gb|ADK81342.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 626

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 71/228 (31%), Gaps = 17/228 (7%)

Query: 3   KNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58
           K +   L   +    +  L   I HD  + +  I+   E+ L     +    +       
Sbjct: 255 KQLEGKLQQTERIHAIGTLAGGIAHDFNNILAVIYGYAEMGLSNSEGKPRFHRYFSEIIR 314

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTGEKI 109
           S+    + ++    ++   +    + D   ++++            V+ +  +      +
Sbjct: 315 SSDRAKELIKQILTFSRMEEGKRDIIDPAPIVKEALKMIRATIPSTVELKAHIESGHHIL 374

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                  +I+LNL   A  ++ +    + IS+   +N     ++  G     PE   +I 
Sbjct: 375 ANISHIHQIILNLCTNAAYAMKKKPGTLRISLDSIENFCRLQVQDTGVGI-TPETMKRIF 433

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +   +    V  +  + K  +            + LL 
Sbjct: 434 LPYFTTKDVNEGTGLGLSVVHGIVEKYKGSIDVASKPGEGTCFTILLP 481


>gi|298374183|ref|ZP_06984141.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268551|gb|EFI10206.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 1045

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA++      S  L +   + + H+I +P+ AI     +L      ++  +   +   + 
Sbjct: 671 MARDKAE--ESNKLKSAFLANMSHEIRTPLNAIVGFSNILASTDNLEDKKEFADIIENNN 728

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               +   + Y      L  L     +      V    +     
Sbjct: 729 SLLLQLINDILDLSKIEAGTLEFTYDYVDINAVLRDLEQSAHLKNKNPDVQISFKDYLEP 788

Query: 107 E-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A      G           N   F ++  G      ++  
Sbjct: 789 CVIYTDRNRLSQLMINLLNNAMKFTQAGLISFGYKLRDDNTLWFYVEDTGCGIPENKRKD 848

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +      ++  + K  +  + ++         L 
Sbjct: 849 IFGRFVKLNTFAQGTGLGLSICEMIVTQMKGTIGVDSMEGKGSKFWFTLP 898


>gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
 gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1385

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 61/237 (25%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
            +     L+ +D       S I H+  +P+  I   +E L     G +  V + + +   
Sbjct: 340 QQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRTQLAGADARVREELEIIHR 399

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
           + +                          VD      D+  V    +       +     
Sbjct: 400 NGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSQVTADLASVFRSAVDKAGLDFRIDCPP 459

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +         K++LNL   A      G          ++    ++   G      E+
Sbjct: 460 LQEQVYVDRGMWEKVILNLLSNALKFTFDGSIGVTVRARDEHAV-ITVTDTGIGV-SREE 517

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +           + +   I    V  L   +   +  +  +      +  L 
Sbjct: 518 MPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGEGTRFTIRLP 574


>gi|229080856|ref|ZP_04213373.1| hypothetical protein bcere0023_34990 [Bacillus cereus Rock4-2]
 gi|228702434|gb|EEL54903.1| hypothetical protein bcere0023_34990 [Bacillus cereus Rock4-2]
          Length = 516

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 340

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 506


>gi|254414213|ref|ZP_05027980.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196178888|gb|EDX73885.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 531

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 68/233 (29%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            + +       +L + + + I H+  +P+  I +S ELL           + +  Q I L
Sbjct: 296 RQALEKEKELGELKSHIITTISHEFRTPLTTIQSSSELLKLYDKKLTEDKKLKHFQKIGL 355

Query: 56  SSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                   L             M+         D    L +  Q   D     K      
Sbjct: 356 CVEHITQLLNDVILIGQSEAGQMKFNPISLEVADLCHDLIEEFQSNLDPRYTLKVFIAES 415

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
             + +       K L +L   A    P+GG +T  +    ++    ++  G      +  
Sbjct: 416 PIKGLFDEAMLRKSLNHLLSNAVKYSPKGGTITFQLGCHSDKVTVQIQDEGIGIPSIDQS 475

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F     G+  STI    +    V      +  ++  E        ++  L 
Sbjct: 476 RLFESFYRGSNISTIGGTGLGLAIVKKYVDLHGGQIQIESEVGIGTTVTVTLP 528


>gi|167646509|ref|YP_001684172.1| histidine kinase [Caulobacter sp. K31]
 gi|167348939|gb|ABZ71674.1| histidine kinase [Caulobacter sp. K31]
          Length = 698

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 56/229 (24%), Gaps = 23/229 (10%)

Query: 8   NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
                 L  +   + + H+I +P+  +    ++++  G+     + +++   S    L  
Sbjct: 317 RAERASLAKSQFLANMSHEIRTPLNGVLGMAQVMERSGLGSPHREHLKIIRDSGETLLAI 376

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------------VQVSWTGEKID 110
           +      +        L D    + + I    R                +     G    
Sbjct: 377 LNDVLDLSKIEAGRFELDDHVFDLAETIGAACRPFALLARQKDVAFVKDIAPDALGAWCG 436

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167
            S    ++L NL   A      G         S+    F+L   G           F + 
Sbjct: 437 DSVRLRQVLSNLASNAVKFTHEGQIRLTVGATSEG-LTFTLTDTGIGIAPDRIASLFEKF 495

Query: 168 VDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +           +       L       L  +            L 
Sbjct: 496 VQADSSTTRRFGGTGLGLAISRELVERMGGTLRMDSAPGKGSTFVFRLP 544


>gi|94267625|ref|ZP_01290943.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451924|gb|EAT02648.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 483

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 21/250 (8%), Positives = 58/250 (23%), Gaps = 39/250 (15%)

Query: 4   NICFNLSSMDLVA------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
                + S  L A               + + H+I +P+ A+    +LLD+  ++    Q
Sbjct: 192 RREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDSHQRQ 251

Query: 52  LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            +  S  +                         +   D    +    +++          
Sbjct: 252 YVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLE 311

Query: 101 QVSWTGEKIDL-----SRERAKILLNLFMVAHAS------LPRGGKVTISVQDSKNENIF 149
            V  +                ++L+NL   A         +     +  +          
Sbjct: 312 FVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEEGRVMVELACLPAAPPYPGPFFRC 371

Query: 150 SLKINGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++   G      ++     D      ++        +       L      ++     + 
Sbjct: 372 TVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREG 431

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 432 GGSTFTMEIP 441


>gi|307719868|ref|YP_003875400.1| nitrogen regulation protein NtrY [Spirochaeta thermophila DSM 6192]
 gi|306533593|gb|ADN03127.1| nitrogen regulation protein NtrY [Spirochaeta thermophila DSM 6192]
          Length = 584

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
           + +N    L +  +     +  ++ H+I +P+  I  + E +       ++  ++  + Q
Sbjct: 347 LERNREKLLQAEKIATWQDIAQQLAHEIKNPLTPIRLAAERIRRKAEGVEDEALQRVLDQ 406

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED--------FIAVDKRVQVS 103
             ++         + +     ++   +  +   ++  ++                 +   
Sbjct: 407 STQIILHEVNRLTRLLEEFRDFSRLREPTLTPCNLRSLLSHILSSYDAPQTPYRFHLDTP 466

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLA 158
                        + L NL   A  +     +          +D ++     ++  G+  
Sbjct: 467 EDIVIQADEEHLKQALSNLIQNAIDAGAGKEQTITVRLLRTSRDGRSYATIEIRDEGHGI 526

Query: 159 RFPEKFTQI-VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE   ++       +      +    V  +  ++  ++               L 
Sbjct: 527 --PEDQQRLVFLPYYTTKRQGTGLGLAIVQRIVLDHNGKIWFTSEVGKGSTFYIELP 581


>gi|293474311|ref|ZP_06664720.1| conserved hypothetical protein [Escherichia coli B088]
 gi|291321341|gb|EFE60782.1| conserved hypothetical protein [Escherichia coli B088]
          Length = 211

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 65/202 (32%), Gaps = 13/202 (6%)

Query: 25  DIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAII----RLKFMRLAFGYTGS 76
           +I +P+ +I        E     G   ++ Q++   +          L+ ++       +
Sbjct: 1   EIRNPLSSIKGLAKYFAERAPAGGEAHQLAQVMAKEADRLNRVVSELLELVKPTHLALQA 60

Query: 77  VDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
           VD    +    Q++           +        E         ++LLNL++ A  ++ +
Sbjct: 61  VDLNTLINHSLQLVSQDANSREIQLRFTANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQ 120

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHE 192
            G ++++V +S      S+  +G      +    I      +  +   +    V  +  +
Sbjct: 121 HGVISVTVSESGAGVKISVTDSGKGIAADQL-EAIFTPYFTTKAEGTGLGLAVVHNIVEQ 179

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           +   +     +      +  L 
Sbjct: 180 HGGTIQVASQEGKGSTFTLWLP 201


>gi|229047322|ref|ZP_04192921.1| hypothetical protein bcere0027_33100 [Bacillus cereus AH676]
 gi|228724064|gb|EEL75410.1| hypothetical protein bcere0027_33100 [Bacillus cereus AH676]
          Length = 510

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 500


>gi|221633256|ref|YP_002522481.1| two-component sensor histidine kinase [Thermomicrobium roseum DSM
           5159]
 gi|221155388|gb|ACM04515.1| two-component sensor histidine kinase [Thermomicrobium roseum DSM
           5159]
          Length = 477

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 57/220 (25%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L + + H++ +P+  I      L E         +E +Q+I   S  A   L  +     
Sbjct: 252 LLANVAHELRTPLTVIQGYAHALREGLLTEAPEREEALQVIASESERAARLLTQLLHLTR 311

Query: 73  --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                       VD    +  +           +    +   + + +S +   +   +  
Sbjct: 312 LETGQIALERQPVDLAALVQRVLARHRLEAQQRRITLTATIPDALLVSGDPDLLEQAIEN 371

Query: 125 VAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVES- 174
           +   +L  G            +  +      +++  G        P  F +   G     
Sbjct: 372 LVQNALVHGRDGMDIVISARSIPATPPRVALTVRDTGPGIPPDALPHLFDRFYRGAPAQN 431

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    V  +   +   +            +  L 
Sbjct: 432 DRNGFGLGLAIVREIVTLHGGTVSVASELGVGTTFTLELP 471


>gi|197304014|ref|ZP_03169046.1| hypothetical protein RUMLAC_02751 [Ruminococcus lactaris ATCC
           29176]
 gi|197296982|gb|EDY31550.1| hypothetical protein RUMLAC_02751 [Ruminococcus lactaris ATCC
           29176]
          Length = 351

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 4   NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQ 51
            +   + + + VA       L S I HD+ +PI AI   +E + +        ++  +  
Sbjct: 102 RLRLKVQAEEKVAFDRENKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIRT 161

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKR 99
           +   ++   ++  +    +   T  +                      ++         R
Sbjct: 162 IYNKANEMNLLINELTLYSKIDTNRIPYNFTTISAKGYFGDCAEDLSVELESKGAEFTYR 221

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLA 158
             +    + I    +  +++ N+   +     +             +     L  NG   
Sbjct: 222 NFMDDDCKVIVDPEQLRRVINNIVSNSLKYTDKPKVEITMDVKDVGDFIQIELGDNGRGI 281

Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    F +    +           I    V  +  E+   +     +     +  ++
Sbjct: 282 AAKDLPFIFDRFYRADASRNSSKGGSGIGLSIVKKIVEEHGGNIWATSEEGVGTTMYFVI 341

Query: 214 EK 215
            K
Sbjct: 342 RK 343


>gi|187926379|ref|YP_001892724.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187728133|gb|ACD29297.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 678

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL+    ++ + +    +   + 
Sbjct: 288 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRGIEAIERSA 345

Query: 62  IRLKFMRLAFGYT---------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                +                         D L    +  + +     +    +     
Sbjct: 346 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKNITIETEFLPVP 405

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG + +SV  +    + +++  G        P  
Sbjct: 406 MLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPTFLPHI 465

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           F +    +           +       L   +  R+       D    ++  L 
Sbjct: 466 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGTTMAVSLP 519


>gi|39996404|ref|NP_952355.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983284|gb|AAR34678.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 835

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S     +   + + H+I +P+ AI    +LL +  +  E  +L+  S+ +A
Sbjct: 316 LARKDAEEASRAK--SDFLATMSHEIRTPMNAIIGINQLLVDTPLTQEQRRLLDDSTTAA 373

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSW 104
              L  +      +      + L                    Q     I++   V    
Sbjct: 374 ESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGT 433

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP- 161
                       +IL NL   A    P GG VT+      +    +F++   G       
Sbjct: 434 PRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAK 493

Query: 162 ----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +  D +         +       L       +  E         S  L 
Sbjct: 494 QESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLP 550


>gi|89097112|ref|ZP_01170002.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087935|gb|EAR67046.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 361

 Score =  114 bits (286), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 65/240 (27%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMS 59
           + +              L + I HD+ +P+ +I   +  + +      E ++        
Sbjct: 121 LKEAERMQKQYERNRQELIASISHDLKTPLTSIKGYVSGIQDGIAGTPEKLERYMNKISR 180

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110
               +  +         +D        E+V  D    D   ++S+  E+ +         
Sbjct: 181 NANDMDALIDELFLYSKLDLEQMPFHFEKVRLDSFFADYIEELSYKMERENGRAELILEG 240

Query: 111 --------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFP 161
                      +  + ++N+   +   + +  K       S   +    +K NG      
Sbjct: 241 EQSFLAEADREKLNRAVMNITQNSLKYMDKTSKRIQIRLTSGTEDLEVEIKDNGAGIGKE 300

Query: 162 EKFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +I D    +            +       +   +  R+           +   L+K
Sbjct: 301 DLP-RIFDSFYRTDASRNSATGGSGLGLSIARKIIEGHGGRIWAASEPGKGTSIHFTLKK 359


>gi|253572573|ref|ZP_04849975.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251837988|gb|EES66077.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 419

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 64/229 (27%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60
                +S+  L +   + + H++ +P+ AI     L+        +     +I  ++   
Sbjct: 180 ERENAISADKLKSAFIANMSHEVRTPLNAIVGFSGLMATATSEEEKKMYTDIISENNERL 239

Query: 61  IIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GE 107
           +  +  +                  D+   L +++ +    +  +  V +          
Sbjct: 240 LRLVNDIFDLSQIDAGVLNFVYSEFDANDLLRELKGLFGMRLNENPLVTLVCEAHLEPIM 299

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +   ++L NL   A      G        +  +E  F +   G      E+  +I
Sbjct: 300 MHSEKQRIIQVLTNLLHNAMKFTKTGEIRFGCHMEGTDEVCFYVSDTGIGI-PEEEQEKI 358

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  +    +      ++ H    R   E           +L 
Sbjct: 359 FSRFTKLDREMQGTGLGLTLSQIIVHNLGGRCGVESEVGKGSTFWFILP 407


>gi|224368990|ref|YP_002603154.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
 gi|223691707|gb|ACN14990.1| two-component hybrid sensor and response regulator histidine kinase
           [Desulfobacterium autotrophicum HRM2]
          Length = 701

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 63/239 (26%), Gaps = 30/239 (12%)

Query: 3   KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +   +  +   +       +R+ H+I +P+ +I    ++L +  +  E    +     
Sbjct: 164 RELSVAMEGLKESSRAKGDFLARMSHEIRTPLSSIMGYTDILFDTCLAPEQTDYVTNIKK 223

Query: 59  SAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           S  +                    +         +          QV    + +  R+  
Sbjct: 224 SCDVLLGIVNDVLDFSRVESGEIGLDPIEFDPEVLCFECLEMVRTQVDTSRVELLCRICD 283

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLA 158
              G          ++LLNL   A      G             +      S++  G+  
Sbjct: 284 CVPGCVRADPNRFRQVLLNLLGNAAKFTVNGVIELSLKVKEKTKTGIVLCASVRDTGSGI 343

Query: 159 RFPEK------FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                      F Q+V G +   +    +       +A      +  E  +    V + 
Sbjct: 344 PTAALGVIFKPFQQVVRGRIAKGLRGMGLGLSICRKIARRMGGNITVESREGEGSVFTF 402


>gi|168334601|ref|ZP_02692754.1| multi-sensor signal transduction histidine kinase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 609

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 25/216 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR--------- 63
             + + H++ +P+  I    E L     DE     + + ++   +               
Sbjct: 380 FVANVSHELRTPLTTIKTYTETLISGAIDEKETALDFLSVMEKETDRMTTLVHDLLELSK 439

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  + +      S+          Q       +      +             ++ 
Sbjct: 440 IDNKQMQLNIQVMDIYSLLLDTIRAQAIQAKCKHHQIKLSYNKNKEYLIEGDPARIGQVF 499

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
            N+   A       G++ I++  +  + +  +K  G      +   +I +          
Sbjct: 500 HNILSNAIKYTEDNGQIKINLSSNDQQVVIKVKDTGIGMSKKDL-ERIFERFYRADKARS 558

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +    +       +   +   +  E    H   +
Sbjct: 559 RKMGGTGLGLSIAKEMVELHGGSIKMESALGHGTTV 594


>gi|303240382|ref|ZP_07326900.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592109|gb|EFL61839.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 488

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 50/217 (23%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H+  +P+  I  SLE L     ++        Q +   +      +  +     
Sbjct: 266 FVANVSHEFRTPLTVIRGSLEALSDGTIEDTEDIKRFYQRMLSETRGLERLVSDLLELSR 325

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                                 +  ++ + +        +        +       ++ +
Sbjct: 326 LQSGKITIHKEHVHIPSLLSDIIKSMQTIADKKEIQIDFITDDNVPPVLGDYDRLRQLFV 385

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177
                A    P    VT++     +     ++  G      E    + +    +      
Sbjct: 386 IFIDNAIKYSPDKTIVTVTTHVKDS-LEILIQDQGYGIAVEELPYVWDRFYKTDKSRKSS 444

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L   N   +  +        +   L 
Sbjct: 445 GTGLGLAIAKHLIKLNGGSVELKSAAGKGTTIEIQLP 481


>gi|294775421|ref|ZP_06740936.1| PAS domain S-box [Bacteroides vulgatus PC510]
 gi|294450741|gb|EFG19226.1| PAS domain S-box [Bacteroides vulgatus PC510]
          Length = 781

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 57/220 (25%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L     + + H+I +P+ AI     L+   D    E     +I  +S   +  +  
Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSHLMTIADNAEDEKLYSDIINQNSEILLQLIND 476

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    + ++ +       V        +    +     
Sbjct: 477 ILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +++ NL   A       G++    +  +    F +K  G      +            +
Sbjct: 537 MQVVTNLITNAIKFT-FKGEIRFGFEVREEYIDFYVKDTGMGISEEKIKMIFERFVKLNT 595

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +    +  E   +        + 
Sbjct: 596 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635


>gi|294667293|ref|ZP_06732513.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602965|gb|EFF46396.1| sensor histidine kinase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 631

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 235 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 294

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                           L   E   E    V +   
Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHA 354

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ + ++      + S+  +G+     
Sbjct: 355 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 414

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473


>gi|289580010|ref|YP_003478476.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289529563|gb|ADD03914.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 789

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 63/229 (27%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRL 55
            + +  +   ++  A   S   HD+  P+  + + L+L+D    ++      E ++    
Sbjct: 557 EQRLEESNKRLEQFAYAAS---HDLQEPLRMVTSYLQLIDRRYTDELDKDGEEFIEFAID 613

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEK 108
            +      ++ +          D    +     + +    +   ++ S            
Sbjct: 614 GADRMRNMIEGLLEYSRIETRGDPFEPIDLDTVLADVRQDLQMCIEESGAEITAESLPRV 673

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                +  ++  NL   A        +V IS   +  + + S+   G      +    F 
Sbjct: 674 EGDPGQLRQVFQNLLSNAIEYSDDTPRVEISAVRNGPKVVVSVADEGIGIDPDDGERVFE 733

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                + +       I       +   +   +  E         S  L 
Sbjct: 734 IFQSLHAQDEYAGTGIGLAICKRIIERHGGDIWVESDPGEGATFSFTLP 782


>gi|195541945|gb|ACF98145.1| putative FixL oxygen regulated histidine kinase [uncultured
           bacterium 1062]
          Length = 451

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 67/233 (28%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR--- 54
           A++    L+ ++ +  + S + H++  P+ AI N ++    +LD++  E           
Sbjct: 210 ARSELARLARLNELGEMASTLAHELNQPLSAIANYVQGCRRMLDKIDEEHANRMRGALDE 269

Query: 55  ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107
                  +        +F+       G  D    + +   +          +    +  +
Sbjct: 270 AAKQALRAGDIIRHLREFVTRGETDKGPEDINHLVEEAGALALVGSRERGIKSVFDFGAD 329

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFP 161
           +  +  +R +I   L  +   ++              +   S       ++  G      
Sbjct: 330 RSKVVVDRVQIQQVLINLMRNAMEAMRDSPSKELIIRTRHVSPEWLRVEVQDTGPGI-AD 388

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    +    V +  +   I       +   +   L  +  +      +  L 
Sbjct: 389 EIAPLLFQPFVTTKPNGMGIGLSISRRIIESHGGELTVDRNEAGGATFAFSLP 441


>gi|154686556|ref|YP_001421717.1| ResE [Bacillus amyloliquefaciens FZB42]
 gi|154352407|gb|ABS74486.1| ResE [Bacillus amyloliquefaciens FZB42]
          Length = 593

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +        + E+ Q+I  
Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASTEEEKKEIAQIIYD 410

Query: 56  SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S+     +  +              Y              +           +    + 
Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTEDISV 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            + +   +     ++  NL   A      GG V I+ Q  K+     +K +G+     + 
Sbjct: 471 SQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQIVKDGLKIDIKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +   +      D     +  + 
Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTTFTFYIP 586


>gi|150006477|ref|YP_001301221.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
 gi|149934901|gb|ABR41599.1| two-component system sensor histidine kinase [Bacteroides vulgatus
           ATCC 8482]
          Length = 781

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 57/220 (25%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L     + + H+I +P+ AI     L+   D    E     +I  +S   +  +  
Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSHLMTIADNAEDEKLYSDIINQNSEILLQLIND 476

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    + ++ +       V        +    +     
Sbjct: 477 ILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +++ NL   A       G++    +  +    F +K  G      +            +
Sbjct: 537 MQVVTNLITNAIKFT-FKGEIRFGFEVREEYIDFYVKDTGMGISEEKIKMIFERFVKLNT 595

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +    +  E   +        + 
Sbjct: 596 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635


>gi|150021705|ref|YP_001307059.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
 gi|149794226|gb|ABR31674.1| PAS/PAC sensor signal transduction histidine kinase [Thermosipho
           melanesiensis BI429]
          Length = 423

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 62/220 (28%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           S + H++ +P+ +IH   E LL++   + E+++       S   R+  +         ++
Sbjct: 195 SNVSHELRTPLTSIHGYAEALLEDNLDDKELIRRFLTIIESEAARMTRLINDLLDLEKLE 254

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---------------LSRERAKILLNLF 123
           S       E++    I    R  +    +  +                     +++LNL 
Sbjct: 255 SGNTQFIFEKINFTEILEHVRNIIEPLTKDYNVDVEFVSPDKIELIGDKDRLTQMVLNLV 314

Query: 124 MVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR---FPEKFTQIVDGN--VES 174
             A        K    V        N     +K  G         + F +    +     
Sbjct: 315 DNAVKYTSLKEKGEKKVLVEAYKDNNHVKLIVKDTGVGIPEKAQKKLFERFYRVDKARSR 374

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V  +  ++   +     +         L 
Sbjct: 375 KMGGTGLGLSIVKTIVEKHNGTIEFTSKEGVGTKFIVTLP 414


>gi|189426572|ref|YP_001953749.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189422831|gb|ACD97229.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 584

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 76/259 (29%), Gaps = 46/259 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN-----------SLELLDEVGIED 47
           + +N    + +  + AL  L S + H+I +P G I             +LELL++   + 
Sbjct: 305 LRRNQQQLVQADKMAALGVLVSGVAHEINNPNGLILLNMPILKDVCADALELLEQHCPDQ 364

Query: 48  ------------------EVMQLIRLSSMSAIIRLKFMRLAFGY-----TGSVDSLIGLG 84
                             +++  ++  +      ++ ++             ++    + 
Sbjct: 365 DQIRLGGLPYRRIRQELPQMLDEMQDGARRIKRIVEDLKDFARQDDAALMEPLNLNHVVQ 424

Query: 85  DIEQVI----EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140
              +++           +             S+   +IL+NL + A  +L    +     
Sbjct: 425 AAVRLVERSLRTATNRFEAEYAEPLPLVQGNSQRIEQILVNLLLNACQALTDQNRGIFLR 484

Query: 141 QDSKN---ENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKI 195
               +       S++  G     PE   ++ D    +        +       +  E+  
Sbjct: 485 TFIDHATNSVGVSVRDEGCGI-APEHLDRLTDPFFTTKRESGGTGLGLSVSAGIVKEHGG 543

Query: 196 RLLPEIIDDHNVVLSALLE 214
            L           ++ LL 
Sbjct: 544 SLQFSSPPGQGTTVTLLLP 562


>gi|298505413|gb|ADI84136.1| sensor histidine kinase response regulator, HAMP domain-containing,
           putative heme-binding site [Geobacter sulfurreducens
           KN400]
          Length = 835

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S     +   + + H+I +P+ AI    +LL +  +  E  +L+  S+ +A
Sbjct: 316 LARKDAEEASRAK--SDFLATMSHEIRTPMNAIIGINQLLVDTPLTQEQRRLLDDSTTAA 373

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSW 104
              L  +      +      + L                    Q     I++   V    
Sbjct: 374 ESLLIIINDILDLSRVEARRLELFPEAVELRSFVESLRRLFAVQATRKQISLSVSVGEGT 433

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP- 161
                       +IL NL   A    P GG VT+      +    +F++   G       
Sbjct: 434 PRFVWCDPARLRQILTNLLSNALKFTPTGGVVTMVADQAPAGAGLVFTVSDTGIGIDKAK 493

Query: 162 ----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +  D +         +       L       +  E         S  L 
Sbjct: 494 QESIFEMFRQADSSTTRIYGGTGLGLAITKGLVELMGGTIAVESEPGSGATFSVCLP 550


>gi|289665498|ref|ZP_06487079.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 660

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 264 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPNYKGLSVI 323

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                           L   E   E    + +   
Sbjct: 324 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHV 383

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ +S++      + S+  +G+     
Sbjct: 384 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVSDSGDGIAAE 443

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 444 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 502


>gi|228990915|ref|ZP_04150879.1| hypothetical protein bpmyx0001_16760 [Bacillus pseudomycoides DSM
           12442]
 gi|228768852|gb|EEM17451.1| hypothetical protein bpmyx0001_16760 [Bacillus pseudomycoides DSM
           12442]
          Length = 638

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 15/226 (6%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSM 58
           K       S  L     L + I H+I +P+ A+   + LL        +  + ++     
Sbjct: 408 KTEELLRKSEKLAVVGQLATAIAHEINNPLTAMKGFMHLLKSSENKKNEHYIDIVLSEIE 467

Query: 59  SAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSR 113
                                  D  + +  +   +    +  + ++   +T +   +  
Sbjct: 468 RIESITNEFMALAKPQALEIKTNDLNVLMKQVVMILQPQAMMNNIQITTEFTSDTSFILC 527

Query: 114 ERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           E  ++      +   ++          + I     KN+        G           + 
Sbjct: 528 EGNQLKQVFINILKNAIEATAMGGEVLIQIEYIPDKNQVNIRFTDYGCGIEKDRIPY-LG 586

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       D   +       +  +++ ++L E        ++  L 
Sbjct: 587 EPFYSIKEDGVGLGLMICYKMIEKHQGKILIESEVGKGTTINVNLP 632


>gi|222082734|ref|YP_002542099.1| two-component sensor histidine kinase protein (probably regulates
           osmosensitive potassium channel) [Agrobacterium
           radiobacter K84]
 gi|221727413|gb|ACM30502.1| two-component sensor histidine kinase protein (probably regulates
           osmosensitive potassium channel) [Agrobacterium
           radiobacter K84]
          Length = 903

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 58/233 (24%), Gaps = 21/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLS 56
                + +  L + L + I HD+ +P+ AI  +   L +                 +  S
Sbjct: 660 RAKLAVEADRLRSALLTSISHDLKTPLAAILGAAGTLRDYLETMSHEDRVDLLSTVVDES 719

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                     + +    +G+++    L     ++   +    ++      E    +    
Sbjct: 720 ERLNRFIANLLDMTKIESGAMEPNYALHYGGDIVGSALRRGAKILARHRVETQMPADLPM 779

Query: 117 ---------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L NL   A    P    + +      +  +F +   G      +     
Sbjct: 780 VKVDPVLFEQVLFNLLDNAAKYAPEESTIRLEAWADVDNVVFRIMDEGPGIPPADLERVF 839

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLEK 215
                    D       +               +      D    V +  L K
Sbjct: 840 DTFYRVRKGDQVRAGTGLGLSICRGFIEAMAGTITAGNRTDRQGAVFTIRLPK 892


>gi|254445718|ref|ZP_05059194.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260026|gb|EDY84334.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1149

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 59/238 (24%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +   +     +    +   + + H+I +P+  I     LL E  +E+E    +     S+
Sbjct: 616 LRATMREAEEANRAKSYFLANMSHEIRTPMNGIIGMTGLLSETTLENEQHDYVDTIRASS 675

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSW 104
              L  +     ++      + + +I   + D +                          
Sbjct: 676 EALLVVINDILDFSKIESGKLEIENIMFDLRDCMEEAIDTLAIQATEKGLDVSYVFGKEV 735

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
            G  +       ++++NL   A     +           ++D      F +   G     
Sbjct: 736 PGSLLGDPTRLRQVIVNLIGNAVKFTAKGGVVVRVDPFHIKDDDVILHFKVTDTGIGI-P 794

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++  ++                   +       L       +  E  D         
Sbjct: 795 ADRIDRLFGSFSQVDASTTRKYGGTGLGLAISKNLVELMGGSMWVESEDGEGSTFHFT 852


>gi|327439034|dbj|BAK15399.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 899

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 57/247 (23%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + ++      S +  +   + + H++ +P+ +I    E+L E        + ++  ++  
Sbjct: 490 LRQSAEQLRQSSNYKSEFLANMSHELRTPLNSILILSEMLAENHENHLSDDELEYAKVIH 549

Query: 58  MSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
            S                       +         +   I    +    +  + +   V 
Sbjct: 550 DSGEDLLNLINDILDLSKVEAGKMDLWFREMDVYEIPQHIQNLFMPIANQKGLELSVDVA 609

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASL---------PRGGKVTISVQDSKNENIFSLK 152
                      +   ++L NL   A              R        Q S      S+ 
Sbjct: 610 NDLAEIFHTDVKRFHQVLNNLLSNALKFTEEGSVTVKVDRARITPAMRQLSDTWITVSVT 669

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G      ++          DG          +       +       +     +    
Sbjct: 670 DTGIGIPKNKQNIVFESFQQADGATVRKYGGTGLGLSICREVTKLLGGWITLSSTEGQGS 729

Query: 208 VLSALLE 214
             +  L 
Sbjct: 730 TFTVYLP 736


>gi|302384308|ref|YP_003820131.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194936|gb|ADL02508.1| histidine kinase [Brevundimonas subvibrioides ATCC 15264]
          Length = 694

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 54/223 (24%), Gaps = 23/223 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70
           +   + + H++ +P+  I    ELL +   +    ++      S       +        
Sbjct: 318 SQFLANMSHELRTPLNGIIAMTELLRDHQTDSRGREMAATIISSGHTLEYVVNDILDVAK 377

Query: 71  ------FGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERAKIL 119
                        D    L    Q+         I +   +    +G         ++++
Sbjct: 378 IEAGLLQFEAAPFDLDDLLKAATQLHGAAAAAKGITLRLTIHDDASGVYRGDRTRVSQVI 437

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVE--S 174
            NL   A      GG    + +    E   S+   G           F +    +V    
Sbjct: 438 SNLISNAVKFTETGGVQVTARRHGDRELCLSVSDTGVGFDRATAARLFQRFEQADVSVSR 497

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLEK 215
                 +       L      R+    +            L +
Sbjct: 498 RYGGTGLGLAICASLTEIMGGRVTVRSVPGKGSTFFAHLALPR 540


>gi|262170360|ref|ZP_06038038.1| osmolarity sensory histidine kinase EnvZ [Vibrio mimicus MB-451]
 gi|261891436|gb|EEY37422.1| osmolarity sensory histidine kinase EnvZ [Vibrio mimicus MB-451]
          Length = 438

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 64/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +                  + L NL +
Sbjct: 280 YLKPVNREAFEAVDINEIANDVASSEGGYEVQIETDLQVGLTPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K      ++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGITADKKLVWLCVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432


>gi|229829768|ref|ZP_04455837.1| hypothetical protein GCWU000342_01865 [Shuttleworthia satelles DSM
           14600]
 gi|229791757|gb|EEP27871.1| hypothetical protein GCWU000342_01865 [Shuttleworthia satelles DSM
           14600]
          Length = 498

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 62/237 (26%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
                      L   L S I HD+ +PI AI    E + +        ++  ++ I   +
Sbjct: 257 SRQKLENEKEQLA--LISNIAHDLKTPITAIKGYAEGILDGIARTPEKQEAYVRTIYNKA 314

Query: 58  MSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                 +  +                                 ++    I +    Q+  
Sbjct: 315 GEMDKLINELTTYTKIDTSGIPYNFRHMSARDYFDDCAGELTVELSNQQIRLGYANQLPE 374

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             E I    +  +++ N+   +   +    G + + V+D  +     +  +G      + 
Sbjct: 375 ETEVIADPEQLQRVISNIVGNSVKYMGHADGHINMLVKDVGDFVQVEMSDDGQGITAADL 434

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                          S      I    V  +  ++  ++           +  +L K
Sbjct: 435 PYIFDRTFRADSSRNSNTGGSGIGLAVVKKIIEDHGGKVWARSTPGKGTCIYFVLRK 491


>gi|228922347|ref|ZP_04085654.1| hypothetical protein bthur0011_33370 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837402|gb|EEM82736.1| hypothetical protein bthur0011_33370 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 516

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 340

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIKLP 506


>gi|255282095|ref|ZP_05346650.1| sensor histidine kinase ResE [Bryantella formatexigens DSM 14469]
 gi|255267414|gb|EET60619.1| sensor histidine kinase ResE [Bryantella formatexigens DSM 14469]
          Length = 348

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 21/211 (9%), Positives = 51/211 (24%), Gaps = 17/211 (8%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------------RLSSMSAIIRLKF 66
            + H+  +PI +I     LL    +  E                     S +        
Sbjct: 134 NVSHEFKTPISSIAGYATLLQNHSLSAEKRDHYIEKILDNSGKLSVLCSSILMLSRLENQ 193

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
             +       +D  I    +           +              +   ++  N+   A
Sbjct: 194 ETVMHKKPYRLDEQIRRCILLFEARWTQKNIEFDISLPRQLFCGNEQLMEQVWSNIIDNA 253

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQF 183
               P  G + +S+  ++     ++   G           F +   G+     D + +  
Sbjct: 254 IKHSPDNGVIRVSLAKTRTHLAVTIADQGAGIAPEVQRHIFEKFYQGDSSRKADGNGLGL 313

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             V  +    +  +  +         +  L 
Sbjct: 314 ALVKRIVDLCQGTVSVKSAPGSGAAFTVTLP 344


>gi|329940075|ref|ZP_08289357.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329300901|gb|EGG44797.1| putative two-component system sensor kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 594

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 61/216 (28%), Gaps = 18/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL----- 69
           ++ S I H++ +P+  I   L+   +     + +++  ++  +      +  +++     
Sbjct: 378 VMVSDIAHELRTPLTNIRGWLDAAQDGLAEPDADLLASLQEEAGLLQHIVDDLQVLAAAD 437

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                         + +       +       V+  V                ++L NL 
Sbjct: 438 AGTLRLHPRVLDLRELVEQTMSAHRATARAGGVETAVLAPGRLTVTADPVRLRQVLGNLL 497

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178
             A    P GG+VT+  +         ++  G      +    F +      +       
Sbjct: 498 SNAIRHTPPGGRVTLGARRVPGAVAIEVRDTGCGIGEEDLPRVFDRFWRAERSRSRRTGG 557

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  L   +   +L         V +  L 
Sbjct: 558 SGLGLSIVRQLVRAHGGDVLVRSRPYEETVFTVRLP 593


>gi|310824646|ref|YP_003957004.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397718|gb|ADO75177.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 473

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 58/219 (26%), Gaps = 22/219 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG---- 72
              + + HD+ +P+  +  S ELL          +L       +    +  R+       
Sbjct: 250 QFLAGVAHDLRTPLNTLKLSTELLLRAPTPPPPEKLRESLLRISAQLDRLNRMVGDLLDQ 309

Query: 73  ----------YTGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWTGEKIDLSRERAKILL 120
                          D    + ++ ++        +                    ++L 
Sbjct: 310 TRIEAGNLELRLEDTDLCTLVREVAELHRPLSQQHQIELTVPDGPVPVRGDPTRLIQVLT 369

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI---- 176
           NL   A    P GG+V + ++ S+ E + S+   G      E + +I      S      
Sbjct: 370 NLLSNAIKYSPLGGRVRVLIEQSQEEVLLSVSDEGVGIPPGE-YERIFAPFKRSASASAE 428

Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +   +     +         L 
Sbjct: 429 LPGIGLGLSVSRRIVRAHGGNIEVVSQEGAGSTFRVRLP 467


>gi|262273558|ref|ZP_06051372.1| osmolarity sensory histidine kinase EnvZ [Grimontia hollisae CIP
           101886]
 gi|262222536|gb|EEY73847.1| osmolarity sensory histidine kinase EnvZ [Grimontia hollisae CIP
           101886]
          Length = 447

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 65/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + + HD+ +P+  I  + E++   +  + + +++     +      + ++R 
Sbjct: 229 EEDRALLMAGVSHDLRTPLTRIRLATEMMSPQDSYLAESMIKDTEECNEIINQFMDYLRS 288

Query: 70  AF-GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                   +D  +   D+           + V+    G          + + NL + A  
Sbjct: 289 VQLQDMSEIDLNLVAEDVSVADGATGHELEVVKGELVGNLEANEVAIRRAVTNLVVNAVR 348

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 K++      +     +++ NG      +          G+     +   +    
Sbjct: 349 YGNGWVKISTGTSADRRHQWIAVEDNGPGIAADQVETVMQPFTRGDTARGSEGTGLGLAI 408

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   L         +    +L 
Sbjct: 409 VKRIVEQHNGALKLSERSQGGLRAQIVLP 437


>gi|330807015|ref|YP_004351477.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375123|gb|AEA66473.1| Putative histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 744

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---------EVMQ 51
           +A+ +     ++     L + + HD+ SP+  I     ++ +    D           + 
Sbjct: 506 LARQVRKERQAVQARDELVAVVSHDLRSPMTVISMLCGMMRKAFSSDGSHSSKRISSAID 565

Query: 52  LIRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            ++ ++      L+ +            +                +   +    A+D   
Sbjct: 566 TMQQATSRMNALLEDLLDTSRIDAGRYTINPQPMDVSQIFEDACSLLTPLATAKAIDISF 625

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+ G V IS     +E +FS++  G     
Sbjct: 626 HAEPNLRINADPERLFQVLSNLIGNAIKFTPQQGTVGISAMSVGDEIVFSVRDTGEGI-A 684

Query: 161 PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           PE+   + +    +         +  Y    +   +  +L  E            + K
Sbjct: 685 PEQLPHVFERYWTTKEGNPNGTGLGLYISKGIVQAHGGKLHAESQPGQGSEFRFTVPK 742


>gi|304397940|ref|ZP_07379816.1| Osmosensitive K channel His kinase sensor [Pantoea sp. aB]
 gi|304354651|gb|EFM19022.1| Osmosensitive K channel His kinase sensor [Pantoea sp. aB]
          Length = 891

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 59/227 (25%), Gaps = 18/227 (7%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56
             +     L   L S + HD+ +P+  +    E+L                ++ +    +
Sbjct: 652 RLSAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASDNSKYVPQASQIREQTLST 711

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  L   R+  G     +       +                VQ+    + + +  
Sbjct: 712 IRLVSNMLDMARIQSGGLNLREEWLALEEVIGGALSSMAPSLKGHEVQLDLPDDIVLIKG 771

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +     ++  NL   +           I    + +    ++   G      +    F + 
Sbjct: 772 DSTLLERVFTNLIENSLKYAGNSAPRGIRAWRAASRLEIAVWDGGPGIAEEDLTRIFDKF 831

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             GN ES +    +       +   +  ++  E   +        L 
Sbjct: 832 WRGNKESAVPGVGLGLAICKTIIESHGGQIWAENRPEGGAAFRLSLP 878


>gi|258623619|ref|ZP_05718612.1| sensor protein TorS [Vibrio mimicus VM573]
 gi|258584107|gb|EEW08863.1| sensor protein TorS [Vibrio mimicus VM573]
          Length = 968

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 55/233 (23%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL E  +       +++ + S  
Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +     Y+      + +      +   +     +                    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                      ++L NL         +    + IS         F+++ +G      +  
Sbjct: 577 RYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDLEGQGIRFAVEDSGIGIAEQDQA 636

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F                +       L       L            S  L 
Sbjct: 637 SLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSSQLGQGSCFSFTLP 689


>gi|261368039|ref|ZP_05980922.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176]
 gi|282570027|gb|EFB75562.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176]
          Length = 482

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 19/231 (8%), Positives = 65/231 (28%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           MA+++     +  L     S + H++ +P+ +I   +E +   +    +   + + +   
Sbjct: 242 MAEDLA---ETDRLKNEFISSVSHELRTPLTSIKGWVETIKNIDDPTNENYRRGLAIIGT 298

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------------- 104
                   +     ++   + +    ++  ++ +       V+                 
Sbjct: 299 ETDRLYTMVEELLDFSRLQNGIQLHCEVLDLVAEATDAALFVEARIRQEGLHFVYEEPPE 358

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++ +N+F  A      GG + +++  +      +++  G      +  
Sbjct: 359 PYPVWADPARLRQVFVNIFDNAIKYSDPGGTIFLTITRTPETVTAAVRDQGRGIAPEDLD 418

Query: 165 TQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    I    V  +      ++           +S  L 
Sbjct: 419 KVKQKFFKAKNSVRGSGIGLAVVDEIVQALGGKVEIASALGQGTTVSITLP 469


>gi|255284210|ref|ZP_05348765.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255265235|gb|EET58440.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 368

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 61/213 (28%), Gaps = 18/213 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF-------- 71
           S + H+  +P+  I+ + +LL++  +  E  +    + + +  RL  +            
Sbjct: 143 SDVSHEFKTPLSVIYTNAQLLEKEELPKETRRECTRNILRSSERLGNLITNMLKLNKLEK 202

Query: 72  GYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                V     L               +   ++   ++      +        +  NL  
Sbjct: 203 QVIQPVSQSYDLCRQLSDCALQFENQWEEKNIEFEAELEERVTIMADEGLLELVWTNLLS 262

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P GG +T+S          S+   G           F +   G+   +   + +
Sbjct: 263 NAVKFTPSGGTITLSQVSDGENVTVSVADTGCGMDEETVKHVFDKFYQGDASHSTQGNGL 322

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +   +   +  E       V +  L 
Sbjct: 323 GLALVKRILQLSDGSITVESTAGKGSVFTVTLP 355


>gi|220702379|pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
           Geobacillus Stearothermophilus Kinb With The Inhibitor
           Sda
 gi|220702380|pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
           Geobacillus Stearothermophilus Kinb With The Inhibitor
           Sda
          Length = 244

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 75/221 (33%), Gaps = 14/221 (6%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----SMS 59
             + +  + A+  L + I H+I +P+ A    ++L++E  +  +  +            +
Sbjct: 4   MVIRAEKMEAVTHLAASISHEIRNPLTAARGFIQLIEEQPLAADKRRQYARIAIEELDRA 63

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRE 114
             I   ++  A     + + L    +IE+VI+    +     V           I    +
Sbjct: 64  EAIITDYLTFAKPAPETPEKLNVKLEIERVIDILRPLANMSCVDIQATLAPFSVIGEREK 123

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             + LLN+   A  ++P GG + + V       +  +   G      E+  ++ +    +
Sbjct: 124 FRQCLLNVMKNAIEAMPNGGTLQVYVSIDNGRVLIRIADTGVGM-TKEQLERLGEPYFTT 182

Query: 175 T-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +    V  +       +  E        +S  L 
Sbjct: 183 KGVKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLP 223


>gi|206889934|ref|YP_002248110.1| sensory box histidine kinase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741872|gb|ACI20929.1| sensory box histidine kinase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 363

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 64/203 (31%), Gaps = 11/203 (5%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT------- 74
           I H+I +P+G+I     ++ E   E       R  S S  +    +     +T       
Sbjct: 160 IAHEIRNPLGSIELFANMISEDLKESIHGDYARRISSSVRMLRNTLENMLSFTRGINPKK 219

Query: 75  ---GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
                 + +  +    Q +   + ++   ++         S    + L+NL + A+ ++P
Sbjct: 220 TSVCINELIEEIIKEFQELFSRVGIEVCNKIKDRFVIYLDSSLIRQALINLIVNAYQAMP 279

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191
            GG +TI            +K  G      E   +I D    +      +       +  
Sbjct: 280 DGGTITIDAYKDGEFVKLIIKDTGQGI-DSEIVEKIFDPFFSTKDRGTGLGLSITNSIIS 338

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +  R+  +         +  L 
Sbjct: 339 AHGGRIEVKSKISKGTEFAIYLP 361


>gi|162451219|ref|YP_001613586.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum
           'So ce 56']
 gi|161161801|emb|CAN93106.1| phosphate sensory box histidine kinase PhoR [Sorangium cellulosum
           'So ce 56']
          Length = 498

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 62/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ AI  + E L      +     E + +I   +      +  +     
Sbjct: 278 FVANVSHELRTPVTAISTAAETLQLGALKDPHEAAEFVDVIDRHAKRLRHLVDDLLDLSK 337

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
              +        +D    +  + Q++ +     +            +  +R    ++L+N
Sbjct: 338 IEAKNFRLALSELDIAPAIEHVTQLLAEAARRRRVTLTVDASALPPVRCDRRALEQVLMN 397

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176
           L   A      G  VT+  +    +   ++  +G           F +           +
Sbjct: 398 LLDNAIKYAGEGAHVTVRARSVDQQVTLAVADDGPGIPPHHLGRIFERFYRVDAGRSRDL 457

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  L       +  E         +  L +
Sbjct: 458 GGTGLGLAIVKHLVELMNGSIEVESAIGRGTQFTVRLAR 496


>gi|229151836|ref|ZP_04280035.1| hypothetical protein bcere0011_33780 [Bacillus cereus m1550]
 gi|228631649|gb|EEK88279.1| hypothetical protein bcere0011_33780 [Bacillus cereus m1550]
          Length = 478

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 63/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 243 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEISEEQKWYIDVMLSE 302

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 303 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 362

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +  +N   +  +   G      ++ +++
Sbjct: 363 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLENNFILIRIIDEGCGI-PEDRISRL 421

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 422 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 468


>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 833

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 60/246 (24%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L      A   SR        + H+I +P+  I    +LL +  I  E  + +
Sbjct: 154 RKLREIELLQAKEAAEAASRAKGDFLANMSHEIRTPMNGIIGMTDLLLDSTIAGEQREYL 213

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------------- 99
           +    SA   L  +     ++      + +  I+  +   ++   R              
Sbjct: 214 QTVKSSAEALLTIINDILDFSRIEAGRLSVEQIDFSLHSVVSETCRALALRASQKGLELY 273

Query: 100 --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKI 153
             V                +IL+NL   A      G          +N       F ++ 
Sbjct: 274 YDVAPDVPSVLRGDPTRLRQILVNLIGNAIKFTEHGEVEVRVRCVQRNGGAASIEFLVRD 333

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      R+  + +      
Sbjct: 334 TGCGIAPDKLEAIFGAFSQADNSTTRKYGGTGLGLAICRQLTELMGGRIGVDSVPGAGSR 393

Query: 209 LSALLE 214
               L 
Sbjct: 394 FEVTLP 399


>gi|225181716|ref|ZP_03735155.1| PAS/PAC sensor hybrid histidine kinase [Dethiobacter alkaliphilus
           AHT 1]
 gi|225167587|gb|EEG76399.1| PAS/PAC sensor hybrid histidine kinase [Dethiobacter alkaliphilus
           AHT 1]
          Length = 734

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 68/235 (28%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLS 56
           +        ++ +++L   I HD  + +  I   L ++ +             ++ I  +
Sbjct: 355 EEEIIKAEKLESISILAGGIAHDFNNILTIILGYLSVVRKPFNAGKSIETYSHLKEIEKA 414

Query: 57  SMSAIIRLKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           ++ AI   K +         V        +    +           +             
Sbjct: 415 TIQAIGLTKQLLTFAKGGAPVKSAASIEELIEETVMFTSSGSNVRCQFAFADDLMPVEVD 474

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLAR 159
             + +++L NL + A  ++P GG + ISV++              N    S++  G    
Sbjct: 475 RGQISQVLNNLIINAVQAMPGGGTIFISVENIAVDKTSSLPLQEGNYIQISVRDEGEGI- 533

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   QI      +      +       +  ++   +  +         +  L 
Sbjct: 534 PEEVRRQIFTPFFSTKSTGTGLGLTTSYSIIKQHGGHITVDSQVGAGATFAFYLP 588


>gi|189467629|ref|ZP_03016414.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
 gi|189435893|gb|EDV04878.1| hypothetical protein BACINT_04019 [Bacteroides intestinalis DSM
           17393]
          Length = 534

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 51/227 (22%), Gaps = 18/227 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK    NL  +    L  + + H+I +P+ AI     +L   D+       +++++ ++ 
Sbjct: 303 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASMLVEEDDKKERQGYIEIMQENTE 360

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGE 107
             +  +  +                    +   + I     ++                 
Sbjct: 361 LLLQLISDILDLSKIEAGTLDFNMGYLNIKDFCEDILRGYEIKEDKPVPVLLASNLPDYR 420

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQ 166
                +   +++ N    A      G                FS+   G           
Sbjct: 421 IYTDKKRLMQVVTNFINNALKFTSEGQITLEYHFKEDTNEIEFSVTDTGIGIAPDAVGQV 480

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +      +       +       +  E            
Sbjct: 481 FDRFVKLNTFSKGTGLGLSICRSIIEHLGGTIGLESEVGVGSRFWFT 527


>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 567

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 61/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +  +    + +    +   + + H+I +P+ AI   ++L    +    + + + ++R ++
Sbjct: 172 LKVSREMAVVANRAKSEFLANMSHEIRTPMNAILGFVDLTLATELNAEQSKYLGMVRSAA 231

Query: 58  MSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S +                  +        SV          +  +  + +  ++    
Sbjct: 232 QSLMRLLEDVLDISKIESGQLVVEQQPFSLASVLRSAVDLLSVKASDKALQLRYQIPAGV 291

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160
               +  +    ++L+NL   A      G        +     +    F ++  G     
Sbjct: 292 PEVLVGDANRLTQVLVNLLSNAVKFTDAGEVVLGLDILEQDHRQISLRFYVRDTGIGIAP 351

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                    +    V  L      R+  E            L 
Sbjct: 352 DRLEAVFEKFYQVDSSSTRRFGGSGLGLAIVRQLVENMGGRVWVESELGKGSTFYVTLP 410


>gi|153007087|ref|YP_001381412.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152030660|gb|ABS28428.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 969

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 58/214 (27%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR----------- 63
           + + HD+ +P+ AI     +L     ++          I  S                  
Sbjct: 743 AIVSHDLRTPLSAIIMGARVLGGGAAEDPERVRATATRIASSGERMNRLIGDLLDLASLE 802

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-KILLNL 122
              + +               D+ +   +   +D R + +     +    +R  ++L NL
Sbjct: 803 RGRLSMRRSAHAPSTLAREAADVIRPAAEAKGLDVRWRAADDLPLVPCDHDRILQVLGNL 862

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHD 180
              A  +    G V I      ++ +F ++  G      E            +       
Sbjct: 863 TSNAVKATAS-GHVAIGASARGDQVLFEVQDTGPGIPSEELPHVFDRFRRGRSAAYAGTG 921

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L   +  R+  E       V+   L 
Sbjct: 922 LGLAIARALVEAHGGRIWAESTPGLGTVVRFSLP 955


>gi|262392681|ref|YP_003284535.1| nitrogen regulation protein NR(II) [Vibrio sp. Ex25]
 gi|155172|gb|AAA27524.1| nitrogen regulator 1 [Vibrio alginolyticus]
 gi|262336275|gb|ACY50070.1| nitrogen regulation protein NR(II) [Vibrio sp. Ex25]
          Length = 348

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+++  +  + +   +    A
Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIVIERDYDPSLPEILMDA 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  +  K      +  NG     
Sbjct: 236 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 347


>gi|322806796|emb|CBZ04365.1| phosphate regulon sensor protein PhoR (SphS) [Clostridium botulinum
           H04402 065]
          Length = 522

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   D+    ++ +Q+I   +      +  + 
Sbjct: 297 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 356

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + R+ +        I    +  +
Sbjct: 357 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEKVPLLIGNKDKYNQ 416

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G V+I  +  K   +F ++  G      E   +I +        
Sbjct: 417 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 475

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 476 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSQPKKGTKFIVKIP 518


>gi|298530845|ref|ZP_07018247.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510219|gb|EFI34123.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 555

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 75/226 (33%), Gaps = 13/226 (5%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           M +       S  L A+    + + H+I +P+ ++    +   +         E  + + 
Sbjct: 326 MRELESSLEHSRRLAAVGRFAAGLAHEIRNPLSSLKGFAQYFQQKFSGEEPASEYARTMV 385

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             +      +  +                  L    + + +       VQ+     ++++
Sbjct: 386 SEADRLNRVINDLMYLARPRSLQRVELNLADLFQEVRTLLEMDLRSGSVQLILEPGEVEV 445

Query: 112 SRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +R    + +LNL + +  +  +GG++++     K+     ++  G       +  + +
Sbjct: 446 KADRDLIKQAVLNLVLNSLQASRQGGEISLRATREKDRVRIEVQDRGCGMDAATR-EKAL 504

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +    V  +  ++   +  + ++     ++ LL 
Sbjct: 505 EPFFSAREKGSGLGLAIVHRIVQDHGGEIEIDSMEGKGTRVALLLP 550


>gi|224367903|ref|YP_002602066.1| two domain sensory box histidine kinase (methyl-accepting
           chemotaxis transducer/Ntr-family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223690619|gb|ACN13902.1| two domain sensory box histidine kinase (methyl-accepting
           chemotaxis transducer/Ntr-family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 879

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 69/246 (28%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---- 54
            K +  ++     + AL  L   I HD  + + AI    EL      E++ ++       
Sbjct: 489 RKTMESHIQQTQKMEALGTLAGGIAHDFNNILSAIIGFTELAKLGAAENKRLKDNLDNVL 548

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +       L F R A  +   +  +  + +  + +   I  +  +Q  +      
Sbjct: 549 TAGLRARELVKHILAFSRKADVHKDIIQIVPLIKESLKFLRASIPANIDIQTRFMITDAT 608

Query: 111 ---LSRERAKILLNLFMVAHASLP----------------RGGKVTISVQDSKNENIFSL 151
                 +  ++L+NLF  A  ++                        +     +    ++
Sbjct: 609 ILADQTQIHQVLMNLFNNAAYAMKEKGGVLAVELDNFDMVTDIPPQFNELQPGSYVRLNI 668

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G          +I +    + +  +   +       +    K  +      D     
Sbjct: 669 SDTGVGI-EKHVMERIFEPFFTTKVRGEGTGMGLSLSYGIIKAMKGHISVSSEPDMGTTF 727

Query: 210 SALLEK 215
             L+ K
Sbjct: 728 QILIPK 733


>gi|71908962|ref|YP_286549.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
 gi|71848583|gb|AAZ48079.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal:Hpt [Dechloromonas aromatica RCB]
          Length = 923

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 57/239 (23%), Gaps = 29/239 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK      S     +   + + H+I +P+  +    ELL    +E    Q +     S 
Sbjct: 258 LAKEAAEAGSQAK--SEFLATMSHEIRTPMNGVLGMTELLLGTELEPTQRQFVEAVERSG 315

Query: 61  IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
              L  +     ++              D    L +  ++               +    
Sbjct: 316 KHLLHIINDILDFSKIEAGKLELDVVDFDLRNLLEESLELFSQPARRKGLELVADLPPDE 375

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
                       +I+ NL   A      G  +        +D+  +    +   G     
Sbjct: 376 KLIVRGDPLRLRQIVTNLLGNAVKFTETGEILLRLLVVEPRDNGLKLALVVSDTGIGIPL 435

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +   +I +                 +       L      R+  E         +  L
Sbjct: 436 -DAQEKIFEHFLQADGSTTRKYGGTGLGLAICRHLVDMMGGRIHVESTPGKGAAFTVEL 493


>gi|32476695|ref|NP_869689.1| sensor/response regulator hybrid [Rhodopirellula baltica SH 1]
 gi|32447241|emb|CAD77067.1| probable sensor/response regulator hybrid [Rhodopirellula baltica SH
            1]
          Length = 1739

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 64/234 (27%), Gaps = 24/234 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + ++      +    +   + + H+I +P+ AI    ELL ++  + E +  ++    + 
Sbjct: 1349 LRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQDIIQDTEGLHHLQTIRRNG 1408

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
               L  +      +      + +          I   + +                    
Sbjct: 1409 DYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKEAGLELTVEYGQQI 1468

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163
                   ++   ++L+NL   A    P G    +   +S+       +   G     PE+
Sbjct: 1469 PASIQSDAKRLKQVLINLVGNAIKFTPEGNVRLVVRMESEPIRLCIDVIDTGIGI-TPEQ 1527

Query: 164  FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              Q+          V  T     +       LA      +  +         + 
Sbjct: 1528 QEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVGVGSTFTL 1581


>gi|186681899|ref|YP_001865095.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186464351|gb|ACC80152.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 444

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 70/244 (28%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDL--VALL----CSRICHDIISPIGAIHNSLELLDEV-------GIEDE 48
            +     + +  L   + L     + + H++ +P+ AI    ++L             D 
Sbjct: 155 RQQEQIQMQNFKLLEASRLKSHFLATMSHELRTPMNAIIGFSQILLRPKFGQLSNQQADM 214

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103
           V +++       ++  + +  +    G +D    + D+ +VI   +   + +  +     
Sbjct: 215 VERILNNGKHLLMLLNEVLDFSKLEIGRLDLKAEIFDVSKVINLAVGEMRSLADAKKLSL 274

Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                       +      +IL NL   A      G       +   N+    ++  G  
Sbjct: 275 LVQNDLQNPFIFNDPVRIRQILTNLLSNAIKFTESGEIWVEVKELPTNQVAIIVRDTGIG 334

Query: 158 ARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               + F +I +                 +    V  L      ++  E       +   
Sbjct: 335 IASRD-FKRIFEAFRQVDQTITRKYPGTGLGLAIVDSLVRMMGGKIFLESKLGIGSMFKI 393

Query: 212 LLEK 215
            L +
Sbjct: 394 ELPR 397


>gi|332704946|ref|ZP_08425032.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332356298|gb|EGJ35752.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 395

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 60/220 (27%), Gaps = 22/220 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIR------ 63
           A   S + HD  +P+  I     LL +   +         ++LIR +  +          
Sbjct: 168 AEFVSMLSHDFRNPLNTILLCSGLLQDKEEQLPQEKKLVHLRLIRSAIKNMAQLLDEVSL 227

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                          +D       + + ++     + ++  +  GE  +   +   +   
Sbjct: 228 ISKADSGRLLCQPTRLDLKRFCHQLVEELQISTNNNHQLVFTSQGELREALWDERLLRHI 287

Query: 122 LFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--- 175
                  A    P GG V   +       IF ++  G     PE   Q+      ++   
Sbjct: 288 FSNLLTNAIKYSPTGGTVQFELIAQTECVIFRIQDQGMGI-PPEDQQQLFQPFHRASNVG 346

Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I    +    V      +   +  +         +  L 
Sbjct: 347 TIPGSGLGLAIVQQCVEAHGGEISLKSQLGDGTTFTVSLP 386


>gi|325845381|ref|ZP_08168680.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325488596|gb|EGC91006.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 444

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 59/216 (27%), Gaps = 21/216 (9%)

Query: 21  RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67
            + H++ +PI AI    E+L     ++  + DE + +I   +      +K +        
Sbjct: 226 NVSHELKTPISAIKGCTEILLNGAKNDPAVLDEFLTMISDENNRMEQLVKDLLLINRYEF 285

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
              ++        + L         +        +++     +      +     LNL  
Sbjct: 286 DQIKMKTEVFCLNELLTDCIVQPLNVAKLKHQKIKLEAPEQYQIEGDYIQLKHCFLNLLT 345

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD--GNVESTIDSH 179
            A         +T+  +         +   G        P  F +               
Sbjct: 346 NAIHYSGENTTITVKAKAVGEYYQIQVIDQGIGIPSADLPHIFERFYRVDRARSRHTGGT 405

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +K R++     +     +  L K
Sbjct: 406 GLGLSIVQSIIEAHKGRIMVNSELNVGTTFTVSLPK 441


>gi|323463630|gb|ADX75783.1| signal transduction histidine kinase HssS [Staphylococcus
           pseudintermedius ED99]
          Length = 463

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 17/228 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L  +D +       + H+I +P+  IH+ L  L +     +  + I         
Sbjct: 228 TMRLELKQLDDMRQHFVQNVSHEIKTPLTHIHHLLTQLQQEHTTPQQARYIERIYDETHR 287

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110
             + +R     +   +      D   +                   ++ +        I 
Sbjct: 288 LSQLVRQLLLLSELDNDTHLQFDDTFLANACILDILKHENYAIDQKNQVLLYDLEAVTIR 347

Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +    A+   N+   A       G + I +    ++ I  ++ +G          +I +
Sbjct: 348 GNSRLIAQAFENVIRNAIKYTEAFGTIEIDLTAENDQMILKVRDDGPGMNDA-VKQRIFE 406

Query: 170 GNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 S  DS+ +       +   +  R+  E   DH    +  L +
Sbjct: 407 RFYKSSSHTDSNGLGLAISKSIIERHGGRIEVESKIDHGTTFTIFLPR 454


>gi|307721710|ref|YP_003892850.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979803|gb|ADN09838.1| integral membrane sensor hybrid histidine kinase [Sulfurimonas
           autotrophica DSM 16294]
          Length = 1053

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 65/240 (27%), Gaps = 29/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            ++      + +  ++  + + H+I +P+  I    ELL + G+++E  + + +   S+ 
Sbjct: 376 KQDKEAAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTGLKEEQQEFVEIIEKSSE 435

Query: 62  IRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             L+ +                                    +  E  I +   +     
Sbjct: 436 NLLEIINNILDLSKIESNKLEIEDVIFNPIEEFESAVDVYAVRASEKHIDLGCFIDPELE 495

Query: 106 GEKIDLSRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLAR 159
                   +  ++++NL   A              +   S Q+      F ++ +G    
Sbjct: 496 QPLKGDPTKIKEVVINLLSNAVKFTSSSGAINVDIRKLQSPQEGTTRVKFEVQDSGIGV- 554

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+ ++I +        +        +              +L               L
Sbjct: 555 TSEQKSRIFEAFSQADTSITRKYGGTGLGLTISARFIELMGGQLDLHSEPGEGTTFFFTL 614


>gi|296283973|ref|ZP_06861971.1| two-component signal transduction histidine kinase [Citromicrobium
           bathyomarinum JL354]
          Length = 421

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 64/219 (29%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIRLKFMR--- 68
             +   H++ +P+ +I   +E L E   +       + +  I   +      +  +    
Sbjct: 171 FVANASHELRTPLSSIIGYVETLSENPEDIDQATARKFLDTIHREAQRLQNLVSDLMSLS 230

Query: 69  -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDLSRERAKILLNL 122
                        V     +    +       +++   + S   E +   ++  +++ NL
Sbjct: 231 RVEAEKHDRPEQPVPLNALVERAAREGAGPNRIERLAFEASEDFEVLGDPQQLEQLVRNL 290

Query: 123 FMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFT---QIVD--GNVESTI 176
              A      G  VT+ + +S   E    ++  G+            +            
Sbjct: 291 VDNALKYGREGTPVTVRLSESALGEAKLEVEDRGDGIEAEHLPHLTRRFYRTDPGRSRQS 350

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +   +  RL  +    H  +++  L +
Sbjct: 351 GGTGLGLAIVKHIVERHHGRLDIDSEVGHGTIVTVRLPR 389


>gi|296134571|ref|YP_003641813.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia
           K12]
 gi|295794693|gb|ADG29483.1| Osmosensitive K channel His kinase sensor [Thiomonas intermedia
           K12]
          Length = 914

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 79/236 (33%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51
           A++    + +  +   L S + HD+ +P+ A+  + E+L          D   +  + + 
Sbjct: 657 AQDTLLAMQAERMRNSLLSALSHDLRTPLTALVGTAEVLSTRLAAHPPGDAATLHGQALS 716

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSW 104
           L++ S   A +    + +A   +G V        +E+++   +            +Q+  
Sbjct: 717 LLQQSRRLARMVDDLLDMARLQSGQVTLRQDWQSVEELVGSALRAVDAAALAQHPLQIDL 776

Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-- 159
             +   +  +     ++L+NL   A    P G  + +  +    E   ++   G      
Sbjct: 777 PADFPLVRADAVLLERVLVNLLDNALKFTPPGTPLGVRARVRGAEAEITVWDRGPGLPAG 836

Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F     G+ ES I    +       +   +  R+      +     +  L 
Sbjct: 837 RERAVFETFTRGDPESPIPGVGLGLAICRAIVEAHGGRVTAANAPEGGAAFNVRLP 892


>gi|229092613|ref|ZP_04223764.1| hypothetical protein bcere0021_33750 [Bacillus cereus Rock3-42]
 gi|228690766|gb|EEL44542.1| hypothetical protein bcere0021_33750 [Bacillus cereus Rock3-42]
          Length = 516

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 65/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 340

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 341 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 400

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506


>gi|225862322|ref|YP_002747700.1| putative sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225786427|gb|ACO26644.1| putative sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 337

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + K       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 95  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVATSEIEKQEYLKILYM 154

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    I       + +   
Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 274

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E I          + K
Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 331


>gi|225387740|ref|ZP_03757504.1| hypothetical protein CLOSTASPAR_01510 [Clostridium asparagiforme
           DSM 15981]
 gi|225046158|gb|EEG56404.1| hypothetical protein CLOSTASPAR_01510 [Clostridium asparagiforme
           DSM 15981]
          Length = 418

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 60/221 (27%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H+  +P+  I    E+L            + + +I   +      +  +     
Sbjct: 191 FVSNVSHEFRTPMTLISGYAEMLRMWDEVTKEERTKALDVIEQETKRLKKLVSELLTLSR 250

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRERAKIL 119
                        VD    +  I   +ED     +   VS             +   ++L
Sbjct: 251 LDRQEGEERNLPFVDVEAVIEQILWSLEDMANKRRVELVSDVEVDYPVLRANEQFFYQML 310

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           LNL           G+V +  ++  N    ++  +G          +I D          
Sbjct: 311 LNLIENGIKYNREQGRVKVWARNDGNVLRITVSDSGRGIEEKH-QERIFDRFYRIDEDRN 369

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S    + I    V  +  + + R+  E            L 
Sbjct: 370 SRHGGNGIGLSIVSSVVEQMRGRIRVESRPGEGSEFKIELP 410


>gi|225567890|ref|ZP_03776915.1| hypothetical protein CLOHYLEM_03963 [Clostridium hylemonae DSM
           15053]
 gi|225163291|gb|EEG75910.1| hypothetical protein CLOHYLEM_03963 [Clostridium hylemonae DSM
           15053]
          Length = 889

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 64/234 (27%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
            K     L    L A L   I HD+ +P+ +I  + E L                  +  
Sbjct: 651 RKEADVKLQKEQLRANLLRSISHDLRTPLTSISGNAETLMGNDSELSRQQRNAIYKDIYD 710

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTG 106
            S     +    + +     GS++  I            +  V          V+     
Sbjct: 711 DSMWLVNLVENLLSVTRIENGSMELNIQGEILEDVITEALRHVNRRGREQVITVECDELL 770

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   ++++NL   A    P   ++ I  +   ++ + ++  NG   +  E   +
Sbjct: 771 MARMDVKLMLQVIINLTDNAVKYTPPHSEIMIKARRHGDKAVVTVADNGPGIKEDE-KDR 829

Query: 167 IVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      S            +       +   +   +       H  V    LE
Sbjct: 830 LFQMFYTSSNTVSDGRRGMGLGLTLCQAVVGAHGSEIKVYDNVPHGAVFRFELE 883


>gi|46581618|ref|YP_012426.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601223|ref|YP_965623.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris DP4]
 gi|46451041|gb|AAS97686.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120561452|gb|ABM27196.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris DP4]
 gi|311235260|gb|ADP88114.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris RCH1]
          Length = 565

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 65/230 (28%), Gaps = 27/230 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELL--DEVGIEDEVMQLIRLSSMSA 60
           L S  + AL  L + + H++ +P+  I  +     +LL  ++        +L+  +    
Sbjct: 319 LQSSKMAALGKLAAGVAHEVNNPLMLIRENAGWIKDLLVEEDPAAMRNHKELVTAADKIE 378

Query: 61  IIRLKFMRLAFGY----TGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEKI 109
           +   +   +                 +            +  + +     +      +  
Sbjct: 379 MHVDRAKGVTHRMLGLARRLEPLQDDVCVNLLTEQTIKFLETEALHRHITLVKELADDLP 438

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKF 164
            ++ +  ++   L  +   ++   G+       +      +E   S+   G     PE  
Sbjct: 439 PITTDATQVQQVLLNILDNAIDAVGRDGTITIRTGAAPDRSEVFVSVSDTGEGI-PPELL 497

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           ++I D    +    +   +       +  +   R+            +  
Sbjct: 498 SRIFDPFYTTKKVGEGTGLGLAICHSILEKLGGRIHAASAPGQGATFTVT 547


>gi|323359460|ref|YP_004225856.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
 gi|323275831|dbj|BAJ75976.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
          Length = 471

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 60/225 (26%), Gaps = 14/225 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           M   +  ++ +      L   + H++ +PI  +   LE++D  +     E   L      
Sbjct: 223 MLDRLAMSVDAQR---QLLDDVRHELKTPITIVRGHLEMMDPADPHDVAETRNLGIAELD 279

Query: 59  SAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                +  +            T  +D       + +++         ++    G      
Sbjct: 280 RLSRLVDDIDALAVVEAGALTTEVIDVAALTDRVGELVSAIPHHTWTIESRGRGSIHGDH 339

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD 169
               +  L L   A    P G  + I      +     ++ +G           F +   
Sbjct: 340 DRLIQAWLQLADNAAKYTPDGTPIEIGSNIGDSNVDLWVRDHGPGIPPAARHRVFRRFDR 399

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    ++   +    V  +A  +               ++  L 
Sbjct: 400 ISTRRGVEGSGLGLSIVDAIAKAHDGYCSVSDTPGGGATVTLHLP 444


>gi|283852085|ref|ZP_06369359.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572475|gb|EFC20461.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 724

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 65/243 (26%), Gaps = 31/243 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVM 50
            KN+   L  S  + A+  L   I HD  + +G I    E+++    +        D ++
Sbjct: 325 RKNLEMRLRQSQKMEAIGTLAGGIAHDFNNILGIIMGFAEMIEAEAEQDGSLARRVDHIL 384

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              R +    +  L F R        +     + +  ++I   +     +  S    +  
Sbjct: 385 SACRRARDLVLQILTFSRQNDQEATPLHVGPLVKETLKLIRATVPNTIALVESIRPGRDT 444

Query: 111 LSRERAKILLNLFMVAHASLPRGG-----------------KVTISVQDSKNENIFSLKI 153
           +  E  +I   L  +   +                             +        ++ 
Sbjct: 445 ILAEPTQIQQILMNLCANAAHAMRETGGVLEVGLEEAPAGLCPIPGEANPGECLRLWVRD 504

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G     P+   ++ D    +    +   +       +  +    +  +       +   
Sbjct: 505 TGPGI-GPDILERVFDPFFTTKKPGEGTGMGLSVAHGVVRKYHGDIKVKSDPGQGALFDV 563

Query: 212 LLE 214
            L 
Sbjct: 564 YLP 566


>gi|265765063|ref|ZP_06093338.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254447|gb|EEZ25881.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301161449|emb|CBW20989.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 549

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     ++   L     + + H+  +P+  I + +EL+ +       +           
Sbjct: 9   EKEHIEEMNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHA 66

Query: 62  IRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----T 105
            ++K +          D                 +   +     A  K +          
Sbjct: 67  QQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQD 126

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  K+L NL   A   +P  G+++I    + ++ + ++K +GN     E   
Sbjct: 127 ISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQVVIAVKDSGNGISKEE-QE 185

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I D   ++            I       +   +   +  E   +        L K
Sbjct: 186 RIFDRFYQADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESESNEGSCFIVKLPK 241


>gi|224539516|ref|ZP_03680055.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518864|gb|EEF87969.1| hypothetical protein BACCELL_04421 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 997

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 55/229 (24%), Gaps = 18/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      + +    L  + + H+I +P+ AI     +L +    +E  + I +   +  
Sbjct: 626 AKEKAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSSILADAEEPEEKEEYINIIENNNT 683

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +                         +D      ++E+        D  V          
Sbjct: 684 LLLQLVGDILDLSKIESGTLEFVYSDIDLNALFQELEESARLRQKNDAVVIRYLPEMPDC 743

Query: 111 L----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ N+   A    P G         + +   F +   G      +K T 
Sbjct: 744 FVNIEKNRLTQVVTNMMNNAMKFTPSGSITFGYHLKNTDFLYFYITDTGYGIEKDKKDTV 803

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +      +       +       +  E            L 
Sbjct: 804 FGRFVKLDSFSQGTGLGLSICQSIVENLGGEIGVESEPGKGSTFWFTLP 852


>gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces
           ambofaciens ATCC 23877]
          Length = 1368

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 60/239 (25%), Gaps = 31/239 (12%)

Query: 5   ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLS 56
                 + +L  L        S I H+  +P+  I   +E L     G +  + + + + 
Sbjct: 320 EAQQRRAEELAELDRAKTAFFSNISHEFRTPLTLIMGPVEELRTQLAGADAHIREELDVV 379

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQ 101
             + +                           D  +   D+  V    I           
Sbjct: 380 HRNGLRLGKLVNSLLDFSRIEAGRMQARYEPTDLSLVTADLASVFRSAIDKAGLGFHIDC 439

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          K++LNL   A       G + ++V       + ++   G      
Sbjct: 440 APLPEPVYTDRGMWEKVILNLLSNALKFT-FDGSIRVTVHAEDTHAVVTVADTGIGVPAA 498

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ +           + +   I    V  L   +   +  +  +      +  L 
Sbjct: 499 E-MPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGTITADSTEGGGTRFTVRLP 556


>gi|320161092|ref|YP_004174316.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994945|dbj|BAJ63716.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 651

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 23/233 (9%)

Query: 3   KNICFNLSSMDLVALL---CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54
           + I      ++  ALL    S   H++ +PI  I+  L++L      +   ++ + +L +
Sbjct: 414 EAIRIRTQQLEQRALLGEVTSVFAHEVRNPINNIYTGLQVLSATLPPDDANQEHLTRLQQ 473

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                  +    +  +       +           L              +      T +
Sbjct: 474 DCVRLNNLMESVLNFSRNTQYKFEPVDLKDFLQRILDRWRPRFGKVNIEAQLFVQEGTPK 533

Query: 108 KIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFP 161
                R   ++  NL   A  ++ +                 ++E + ++  +G      
Sbjct: 534 AYADPRSLEQVFTNLISNAVDAMSKKGGHLTFQVSPKIGSLGRSEVVIAVLDDGPGI-PD 592

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +  V +  +   +       +   +   +          V    L+
Sbjct: 593 EIRERIFEPFVTTKPNGTGLGLAITKRIVTAHHGSIQVNSFPG-GTVFEVTLQ 644


>gi|312878350|ref|ZP_07738262.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311794868|gb|EFR11285.1| integral membrane sensor signal transduction histidine kinase
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 458

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50
           +AK     +  + +         S   H++ +P+  I+  + L+D  G  D+ +      
Sbjct: 221 LAKTFNEMIERLKISFEKQNQFVSDASHELRTPLSVINGYINLIDRWGKNDKEVLQESIV 280

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----FIAVDKRVQV 102
                ++  +      L   R   G       ++ L  + + I           +     
Sbjct: 281 AIKNEVKYMTELVERLLFLARGDSGVIKLQKEVVNLNQLVEEIVKEGKLVAPNRNWSYNH 340

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +     R   ++L  +   +      GG + ISV+   ++    +K NG      E
Sbjct: 341 KGRIDIFADGRLMKQMLRAIIDNSIKFTQEGGTINISVEKHLDKVKIVVKDNGIGIPREE 400

Query: 163 K---FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +   +       +    V  +   +   +L E        +S LL 
Sbjct: 401 IGKIFDRFYRVDKVRSKTTGGSGLGLSIVKWIVEAHNGEILVESELGKGTEVSVLLP 457


>gi|167576610|ref|ZP_02369484.1| two-component system sensor protein [Burkholderia thailandensis
           TXDOH]
          Length = 926

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           M K     L    + +           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 424 MRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSER 483

Query: 53  IRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++    +   L                        D    L +I               
Sbjct: 484 LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQL 543

Query: 102 VSW-----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
           +S                  +IL NL   A     RG       Q       +     + 
Sbjct: 544 LSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQGDSAIEIWVN 603

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       LA      +  + + D   
Sbjct: 604 DTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGT 663

Query: 208 VLSALLE 214
            ++ +L 
Sbjct: 664 TVTVVLP 670


>gi|162456214|ref|YP_001618581.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161166796|emb|CAN98101.1| sensor histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 695

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 63/229 (27%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + ++      S  L  +  L S + HD+ +P+  I   ++L+             RL   
Sbjct: 399 LFRSRLEREQSERLTTIGRLLSGVMHDMRTPLTVISGYVQLMAGAPDAATREDHARLILK 458

Query: 59  SAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              +     R    +                    +    +       V   +++   G 
Sbjct: 459 QFDVISAMQREVLEFARGERSILVRKVYLTKFFGDIEKQLEHELAGTGVSLSLELEDRGT 518

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +  ++L NL   A  ++  GG  VTI       +    +   G      E   +
Sbjct: 519 ARFDEAKMTRLLHNLVRNAVEAMRPGGGTVTIRAYRDGGDLAICVADTGKGI-PKEIQGR 577

Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V S       +    V  +  E+   +      D     +  L 
Sbjct: 578 LFQSFVTSGKRGGTGLGLAIVKKIVDEHAGTITVASS-DKGAKFTIRLP 625


>gi|119487002|ref|ZP_01620874.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
 gi|119455931|gb|EAW37065.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
           8106]
          Length = 1236

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 66/246 (26%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     +++    +   + + H++ +P+ AI    E+L E   +     ++       
Sbjct: 679 LKQAKEAAIAASRAKSTFLANMSHELRTPLNAIIGYSEILTEEAEDSGYRHIVPDLERIC 738

Query: 61  II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        + ++    G +D  +    I  +IE  I+  + +    +        
Sbjct: 739 TAGRNLLTLINDILDISKIEAGRMDLYLEDFSISALIESVISTAQPLVDRNSNTLEVECS 798

Query: 114 ER-----------AKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKING 155
           ++            +ILLNL   A               +       + +   F +   G
Sbjct: 799 DQIDILYADITKVRQILLNLLSNAAKFTTAGQIKLKVSPQPAEFPNTAPSLIQFQVSDTG 858

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                PE+   +                   +               +  +   D     
Sbjct: 859 IGM-SPEQLDLLFQPFTQGDASTTRRYGGTGLGLTISQRFCQMMGGTITIDSQLDCGSTF 917

Query: 210 SALLEK 215
           + +L +
Sbjct: 918 TVILPR 923


>gi|83643743|ref|YP_432178.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631786|gb|ABC27753.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 834

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 59/241 (24%), Gaps = 32/241 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK      S     +   + + H+I +P+ AI     L+    ++      +   +++A
Sbjct: 210 LAKEQAETASEAK--SFFVANVSHEIRTPMNAILGMCYLMQRTDLDARQTDFLNRINVAA 267

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSW 104
                     +  +    G +        ++ V++    ++              V    
Sbjct: 268 KSLLALINDILDFSKIEAGKLKIENRPFSLDGVLQQLAQMEAAKAAEKQLELIFSVSQDV 327

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-------KNENIFSLKINGNL 157
                       +ILLNL   A     RG  V                   FS++  G  
Sbjct: 328 PQRLKGDPDRLGQILLNLVNNAIKFTERGKIVVTVRLYKKEAGDEGPVMLRFSIRDTGVG 387

Query: 158 ARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                   ++               +   +       L      ++  +           
Sbjct: 388 IAPKNLS-RLFAAFSQVDSRLSRRYEGTGLGLAICKQLVQLMGGKIWAKSTPGKGSTFVF 446

Query: 212 L 212
            
Sbjct: 447 T 447


>gi|82702685|ref|YP_412251.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82410750|gb|ABB74859.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1397

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 64/243 (26%), Gaps = 31/243 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       + +  ++  + + H+I +P+  +    ++L +  +    M+++ L   SA
Sbjct: 698 LEQARHEAEQANEAKSIFLAAMSHEIRTPMNGVIGMADVLQQTSLSGYQMEMVDLIRESA 757

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSW 104
              L+ +     ++      + +      +E  +                     +  + 
Sbjct: 758 FALLEIIEDILDFSKIEAGRLEIEQAPMSVEKVVEKACAMLESLAARKAVELTLFLDPAI 817

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGN 156
             E +  +    ++L+NL   A        +                     F +  NG 
Sbjct: 818 PDEVLGDALRLRQVLVNLANNAIKFSSGLQEPGRVSVRALLVEHDQDTVTVEFEITDNGI 877

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E  +++                   +       L       +          V +
Sbjct: 878 GMN-EEVQSRLFTSFTQGDTSTTRRYGGTGLGLAITHHLVELMGGSIQVRSAPGEGSVFT 936

Query: 211 ALL 213
             L
Sbjct: 937 VRL 939


>gi|148264784|ref|YP_001231490.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
 gi|146398284|gb|ABQ26917.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 929

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +   F    +D + +L   I HD  + +  I  ++ +             ++   + +S 
Sbjct: 552 EEELFKARKLDSLGILAGGIAHDFNNLLTGILGNVSMARMIIPPDHDAYLLLDRAQKASE 611

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----R 113
            A    + +         V  L G+  I      F      V+  +              
Sbjct: 612 RARDLTQQLLTFSKGGAPVKRLTGIEHILVDSATFALRGSNVRCEFAIPADLWPAEIDAG 671

Query: 114 ERAKILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNLARFPE 162
           + ++++ NL + A  ++P                     D       ++K  G      E
Sbjct: 672 QMSQVINNLVINADQAMPDGGVISIQAENIETFSDGDNPDDGRIIQLTIKDTGIGI-LEE 730

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D    +      +    V  +   +   +               L 
Sbjct: 731 HLQRIFDPYFTTKHHGSGLGLATVYSIVKNHNGEIRVVSQTGVGTTFIIRLP 782


>gi|116625338|ref|YP_827494.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116228500|gb|ABJ87209.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 489

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 60/217 (27%), Gaps = 24/217 (11%)

Query: 21  RICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM-------- 67
            + H++ +P+ +I    E L +            + +IR ++       + +        
Sbjct: 256 NVSHELRTPLASIQGYTETLIDGALTDPDHNMRFLGIIRHNAERLARLTEDLLTLSRVEQ 315

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDLSRERAKILLNLF 123
           +          +   + D  +++      +    V             S   ++IL NL 
Sbjct: 316 KRQKFEFDLHSANALIHDAFELVSPIARKNYIELVEERAPEDAVVCCDSEAVSQILSNLL 375

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P  GK+T+      +   F ++  G      +   ++ +            + 
Sbjct: 376 DNAIKYTPADGKITMGATPVGSMVEFFVRDTGAGIPEEDLP-RLFERFYRVDKARSRELG 434

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +      E +          L 
Sbjct: 435 GTGLGLSIVKHMVAAHSGATRVESVVHQGSTFYFTLP 471


>gi|312144079|ref|YP_003995525.1| integral membrane sensor signal transduction histidine kinase
           [Halanaerobium sp. 'sapolanicus']
 gi|311904730|gb|ADQ15171.1| integral membrane sensor signal transduction histidine kinase
           [Halanaerobium sp. 'sapolanicus']
          Length = 459

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 57/234 (24%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M   +              S   H++ +PI  I   ++LL     ++  + DE ++ I+ 
Sbjct: 226 MLDRLERAFKKQK---QFVSDASHELRTPISVIKGYVDLLNRWGKEKPKVRDEAIKAIKK 282

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TG 106
            + +    ++ + L      S             +   I  + ++               
Sbjct: 283 ETENMKQLMENLLLLARGDDSELIKNEELFNLNNLIKEIIKEFKLLKDDIEINFQEKAEI 342

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFT 165
                     +++      +         + + +  ++    I S++  G      +   
Sbjct: 343 NFWGDKNLFKQLIRIFIDNSIKFTSNSENIKLMIDKTETSNCIISIEDKGQGIAAEDLPH 402

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +   +       +       +  E  +         L 
Sbjct: 403 VFDRFYQADKSRTRKKEGSGLGLAIAKEIVDSYNGEIDVESTEGEGTTFRIYLP 456


>gi|210609627|ref|ZP_03288078.1| hypothetical protein CLONEX_00262 [Clostridium nexile DSM 1787]
 gi|210152817|gb|EEA83823.1| hypothetical protein CLONEX_00262 [Clostridium nexile DSM 1787]
          Length = 514

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +  +L   +E   +++  QL      
Sbjct: 273 REEAVTKAKNEQLRANLLRSISHDLRTPLTSISGNAAILLNNEEAFDKEKRRQLYTGIYD 332

Query: 59  SAI-------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            ++                +           VD +I         +              
Sbjct: 333 DSMWLINLVENLLSVTRLEESSMQLNMQVELVDEVIEEALKHISRKREEHQLVYEPSEEL 392

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 SR   ++L+NL   A      G ++ +S     +    S+  NG      E   
Sbjct: 393 LLAKMDSRLIVQVLINLVENAIKYTQEGSRIEVSAVQKADMIEISVADNGKGI-KEEAKE 451

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           +     +  +    + H +   +          + S  L+
Sbjct: 452 KIFDMFYTAENKPADSRRGLGLGLFLAKSIIHAHGGTIWVADNVPSGTIFSFTLQ 506


>gi|196232629|ref|ZP_03131481.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chthoniobacter flavus Ellin428]
 gi|196223391|gb|EDY17909.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chthoniobacter flavus Ellin428]
          Length = 1047

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 28/235 (11%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
                M+ V  L S + HD+ + +  I  S+ LL +       D V+  I          
Sbjct: 667 LRAQRMESVGTLASGVAHDLNNILAPIMMSVPLLRQQLPPDTLDAVVSNIETCVERGARI 726

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116
           ++ +             + +G +   +   +       ++     +           +  
Sbjct: 727 VQQVLAFGRGLEGERLPLKIGAVIDEMMAIMRETFPKDITLECLPVAKMPPVVGDATQLH 786

Query: 117 KILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNLARFP 161
           ++LLNL + A  ++P GGK                 +         +  +  +G+    P
Sbjct: 787 QVLLNLCVNARDAMPGGGKLRLSATHLEVDASYASMLPEAKPGPYVLLEVADSGSGI-PP 845

Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    +        +    V  +   +   +               L 
Sbjct: 846 EVVERIFEPFFTTKETGKGTGLGLSTVHGIVRSHGGFIKVATEPGKGTTFQVYLP 900


>gi|15891164|ref|NP_356836.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
 gi|15159515|gb|AAK89621.1| two component sensor kinase [Agrobacterium tumefaciens str. C58]
          Length = 900

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 58/232 (25%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-------LIRLS 56
                  +  L   L + I HD+ +P+ AI  S   L +   +            ++  S
Sbjct: 658 RARLAAETDRLRTALLTSISHDLKTPLAAILGSAGTLKDFADDIPPDARAELLSTIVEES 717

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------GE 107
                     + +    +G+++   GL  +  ++   ++   ++ V              
Sbjct: 718 ERLNRFISNLLDMTRIGSGAMEPNYGLHFLGDMVGTALSRAAKIVVRHEVVLDIPSDLPM 777

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L NL   A    P    + I           S+   G      +     
Sbjct: 778 LKVDPVLFEQVLFNLIDNAAKYAPEHTTIAIRGWRQGKNIFLSVADEGPGIPPDDLERVF 837

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLE 214
                   +D       +               +  E   D      +  L 
Sbjct: 838 DSFYRVRKVDHVQAGTGLGLSICKGFIEAMGGSIRAENRADRGGAQFTIGLP 889


>gi|332701608|ref|ZP_08421696.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332551757|gb|EGJ48801.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 828

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 60/232 (25%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
            K +   +     L  +  L + + H+I +P+G I    +LL +           + +++
Sbjct: 580 EKRVLARMQQGEKLATVGKLAAGLAHEINNPLGVILCYAQLLRDSLAGVQEKEDVEVIIR 639

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             R +       L F R        +D         +V +      +      +  +   
Sbjct: 640 HTRQARNVLQDLLNFARPKKDGPEVLDVRRVAEAAAKVFQVHAENKRIRLTVESSGEPLR 699

Query: 112 SRERAKILLNLFMVAHASLPRGGKV-------TISVQDSKNENIFSLKINGNLARFPEKF 164
                ++L  +      +                  +    E +  +  NG      E  
Sbjct: 700 MYAPQQVLEQILTNLLNNALDAVTPGEGEVVIRTFREAEHKEIVLQVIDNGPGV-PEEHM 758

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + D    +        +    V  L  +   R+          V +    
Sbjct: 759 AHLFDPFFTTKEVGQGTGLGLAVVYGLVRDLGGRIEVGSA--SGAVFTLFFP 808


>gi|319938401|ref|ZP_08012796.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1]
 gi|319806489|gb|EFW03153.1| hypothetical protein HMPREF9488_03632 [Coprobacillus sp. 29_1]
          Length = 562

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 67/231 (29%), Gaps = 20/231 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57
           +I     +  + +   S + H++ +P+ +I    +LL      DE      + ++    +
Sbjct: 325 DITVAKKAEKMRSEFFSNVSHELKTPMTSIRGYSDLLVQGLVHDETQKHMMLEKIQEEVN 384

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI------EDFIAVDKRVQVSWTGEKIDL 111
             + +    + L+      ++  +    ++ ++               + +      +  
Sbjct: 385 SMSTLINDILMLSRIENMDIEVEMMPMKMKGLVDEVLESYQVELSKHDITMHTDFTDLTY 444

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                +I   L      A       G V ++V+D       ++K  G      +    F 
Sbjct: 445 IGNHQQIYTLLNNLIGNAIKYNIDHGHVFVNVEDQGQAMKVTVKDTGIGIPLADQSRIFE 504

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +   +       +    V  +    K  +           +  +L 
Sbjct: 505 RFYRVDKGRSKQRGGTGLGLAIVKHIVSHYKGVIHLTSELGQGTTIEIILP 555


>gi|317478901|ref|ZP_07938049.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904935|gb|EFV26741.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 294

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           + +       S  L     + + H+I +P+ AI     +L      +       ++ I  
Sbjct: 52  LQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTMLAEMDDLDRETRMAFLKEIND 111

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSW---- 104
           +  S +  +  +        +             L D     E+  +    +QV +    
Sbjct: 112 NKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEFVERL 171

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +      A+++ NL   A      G       + S +   F +   G       +
Sbjct: 172 PQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGIDEVGR 231

Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   I    +       +       +  E            L 
Sbjct: 232 HAIFERFVKMNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283


>gi|258591201|emb|CBE67498.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 942

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVM----QLIR 54
           ++       ++ + LL   I HD  + +  I    EL    L E       +    +L R
Sbjct: 559 EDQLHQAQKLEAIGLLAGGIAHDFNNLLNGIIGFAELALRELSEGSKGALYLSRVPRLGR 618

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            ++      L F R A      +D    L +  ++++        +QV    E +  + +
Sbjct: 619 QAAGLIGQLLTFARKAPLERKPLDLNPLLKESGKLLQRTFPETITIQVEPAFEPLIANAD 678

Query: 115 ---RAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
                +I+LNL   A  ++P GG +                   +        ++   G 
Sbjct: 679 LGNVQQIILNLATNARDAMPHGGTLTLRLAPVILTEASLGDRLHRRPGAFACLTVADTGT 738

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +        +    V  + H+++  L  E  +         L 
Sbjct: 739 GIPAA-IRDRIFEPFFTTKGPGHGTGLGLASVYGIVHQHEGWLEVETAEGQGSAFYVFLP 797


>gi|160889895|ref|ZP_02070898.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492]
 gi|270294144|ref|ZP_06200346.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|156860887|gb|EDO54318.1| hypothetical protein BACUNI_02326 [Bacteroides uniformis ATCC 8492]
 gi|270275611|gb|EFA21471.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 294

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 58/232 (25%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           + +       S  L     + + H+I +P+ AI     +L      +       ++ I  
Sbjct: 52  LQRINEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTTMLAEMDNLDRETRMAFLKEIND 111

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSW---- 104
           +  S +  +  +        +             L D     E+  +    +QV +    
Sbjct: 112 NKDSLLQLVNDLLDYSKIEANTLEYNDGEVDVNALIDEVCTTENMRSHPTGIQVEFVERL 171

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +      A+++ NL   A      G       + S +   F +   G       +
Sbjct: 172 PQCRLVVDRVRFAQVIGNLVRNALKFTEMGSVKIGCRRLSNHNFYFYVADTGCGIDEVGR 231

Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   I    +       +       +  E            L 
Sbjct: 232 HAIFERFVKMNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283


>gi|158523274|ref|YP_001531144.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512100|gb|ABW69067.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1134

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 68/240 (28%), Gaps = 31/240 (12%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRL 55
              + +  + A+  L   + HD  + +  I    EL  +            +E++   R 
Sbjct: 755 AQLIQARKMEAVGRLAGGVAHDFNNMLNVIVGHAELALDETRPDDPVCETLNEILGAARR 814

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           S+      L F R    +   +D    +GD  +V++  +  D  +  +   +   +  + 
Sbjct: 815 SAEITRQLLAFARKQTIHPRVLDLNATMGDRLKVLQRLLGEDVDMAWTPGPDLWPVRMDP 874

Query: 116 ---AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNL 157
               +++ NL   A  ++                    V             S++  G  
Sbjct: 875 SQIDQVMANLLDNARDAIDGVGRVEIETDNVRLGPWDCVDCPGLVPGEYVRLSVRDTGRG 934

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    + +    +    +   +    V  +  +N   +            +  L +
Sbjct: 935 MDRKTL-DNLFEPFFTTKGVGEGTGLGLATVYGIIKQNNGFIYAASRPGQGTAFTVYLPR 993


>gi|121998928|ref|YP_001003715.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590333|gb|ABM62913.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 680

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 51/212 (24%), Gaps = 23/212 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------------ 69
           + HD+ +P+ A+    +LL E  +  E  Q           RL  +              
Sbjct: 314 VSHDLRTPLNALMGFSQLLAETDLTPEERQRYAEHCRRGGERLHGLIDSLLELSRLQSGG 373

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNLFM 124
              +T  +     + +   +              ++                + L NL  
Sbjct: 374 MRAHTEPLALPALIEEQCALFRPAAERKGIELACQISADLPRWIQGDRTRLEQALSNLID 433

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS----HD 180
            A       G V I+      +   +++  G      E   +I               H 
Sbjct: 434 NAIKYTEA-GHVRITASAEGEQITLAVEDTGPGI-PAENRDRIFAAFDRGNYQGEQQGHG 491

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +       +A      L  +         +  
Sbjct: 492 LGLAIAREIAQLMGGNLHLDSEQGRGTTFTLT 523


>gi|315171704|gb|EFU15721.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX1342]
          Length = 463

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 6   CFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
             +        L   L + I H++ +P+  +  ++E + +    +  + +Q         
Sbjct: 234 DLSSQLEKQAGLRKRLTTDISHELRTPLATLKGNIEAMIDGVWELTPDRLQSCYDEVDRL 293

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-------- 112
              ++ + L      + D+L         + + +  +   ++      +++         
Sbjct: 294 TRLIRNIELVNKIETNYDNLEKTNFDLYQLCESVIDNFASKIEEKHLTVNVHGEKVNLFA 353

Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQI 167
              +  ++L NL   A     + GK+  +V+  K   +  ++ NG           F + 
Sbjct: 354 DKDKINQVLTNLLSNAVKFTQKEGKIIFTVKKEKENALLIIEDNGIGIEIDQLVHIFDRF 413

Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +    I    V  +   +   +  +         +  + 
Sbjct: 414 YMADPSRSRNLGGQGIGLAIVKSVVEAHNGTIEAKSNLGLGTTFTISIP 462


>gi|302390008|ref|YP_003825829.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302200636|gb|ADL08206.1| multi-sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 586

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 63/232 (27%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
                L S  L     + + H++ +P+  +    E L      +   + + + +I   ++
Sbjct: 345 TREKKLES--LRREFVANVSHELRTPLTYLQGYTEALIDGMVKQPEEKKKYLNIILEETL 402

Query: 59  SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                +             + L          +  +      + +   V+   ++     
Sbjct: 403 RLRRLVNDLLDLSLMETGHLTLKKDNISLNKLIERVIKKVNPVAEKKRVNITAELKELPL 462

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    ++L+NL   A      GG++ I            +K  G      E    +
Sbjct: 463 IYADEDRMEQVLINLIDNALRYTENGGEIIIEASAGTESVTVCVKDRGPGIPEDELPFIW 522

Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +           I    V  +   +  ++  + + D   V    + 
Sbjct: 523 ERFYKVDKARTRDNGGTGIGLAIVKNIIEAHGGKVWAKNLRDSGAVFCFNIP 574


>gi|260584709|ref|ZP_05852455.1| sensor histidine kinase [Granulicatella elegans ATCC 700633]
 gi|260157732|gb|EEW92802.1| sensor histidine kinase [Granulicatella elegans ATCC 700633]
          Length = 354

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 72/234 (30%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A+N+      +   +       +   H++ +PI A+    +LL +  +++   + +   
Sbjct: 115 LAQNVNQMAEDLKKSSQHRADFIANFSHELKTPIAALVGVSDLLADEKLDEATRRDLTHI 174

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLG----------DIEQVIEDFIAVDKRVQVSWTG 106
             S  +RL  +         ++                    ++      +K + ++++ 
Sbjct: 175 LQSESMRLSRLCDDIVTLTKMEKDFLPQKTRVQLDEQIRHAVILMTEKWKEKDIHLTFSS 234

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
           + +    +     ++  NL   A        ++ I++ +        ++  G        
Sbjct: 235 KPVYCQTDADLMMQVWTNLIDNAIKYSGDTVELIITILEENEHIKVQIEDKGIGLSPEAQ 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F Q          + + +    V  + H  +  +  E       +   LL 
Sbjct: 295 RHIFEQFYQAEHSHVQEGNGLGLAIVQSIVHRLQGEISVESELGKGSIFEILLP 348


>gi|258516234|ref|YP_003192456.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779939|gb|ACV63833.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 546

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 68/225 (30%), Gaps = 14/225 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + I   L  ++LV  + + I H+I +P+  +   L+ L       +      L     
Sbjct: 314 MEREIA-RLDKLNLVGEMAAGIGHEIRNPLTTVRGFLQFLATKEECAKYKSYYSLMIEEL 372

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRVQVSWTGEKID 110
                 +               + ++  +I                   +++    + + 
Sbjct: 373 DRANSIITEYLSLAKDKPLKFNMTNLNSIITTLFPLIQADALKKNSSVNLEMKDVPDLLL 432

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              E  +++LNL   A  ++P  G +TI      +  +  ++  G      +   +I   
Sbjct: 433 DENEIRQLILNLVRNALEAMPLSGNLTIKTFSDVDNVVLEIQDEGKGIPL-DIMEKIGTP 491

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA-LLE 214
              +  D   +       +A  +  ++  +         S   L 
Sbjct: 492 FFTTKDDGTGLGLAVCYSIAARHDAKINVK-TGSSGTTFSVRFLP 535


>gi|256618609|ref|ZP_05475455.1| sensory transduction histidine kinase [Enterococcus faecalis ATCC
           4200]
 gi|256598136|gb|EEU17312.1| sensory transduction histidine kinase [Enterococcus faecalis ATCC
           4200]
          Length = 406

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 6   CFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
             +        L   L + I H++ +P+  +  ++E + +    +  + +Q         
Sbjct: 177 DLSSQLEKQAGLRKRLTTDISHELRTPLATLKGNIEAMIDGVWELTPDRLQSCYDEVDRL 236

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-------- 112
              ++ + L      + D+L         + + +  +   ++      +++         
Sbjct: 237 TRLIRNIELVNKIETNYDNLEKTNFDLYQLCESVIDNFASKIEEKHLTVNVHGEKVNLFA 296

Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQI 167
              +  ++L NL   A     + GK+  +V+  K   +  ++ NG           F + 
Sbjct: 297 DKDKINQVLTNLLSNAVKFTQKEGKIIFTVKKEKENALLIIEDNGIGIEIDQLVHIFDRF 356

Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +    I    V  +   +   +  +         +  + 
Sbjct: 357 YMADPSRSRNLGGQGIGLAIVKSVVEAHNGTIEAKSNLGLGTTFTISIP 405


>gi|255527743|ref|ZP_05394597.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296187582|ref|ZP_06855976.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255508559|gb|EET84945.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296047539|gb|EFG86979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 591

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 58/225 (25%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK- 65
             + +   + + H++ +P+  I   ++ L     ++       + +I          ++ 
Sbjct: 360 EKMRSEFVANVSHELKTPLTTIIGFVDTLKRKPGEDKEKRQRFLGIISEEVERLKRLIED 419

Query: 66  -----FMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---SRE 114
                 +          +  I       +  +       +  + +               
Sbjct: 420 ILLLSHLENQSSSNNLEEVNIYKELDDILYMLTPSANRKNIGINLIIEKNFTLYVKSKDW 479

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN 171
             + ++NL   A       G + +S    +N  +  +K NG      +    F +    +
Sbjct: 480 FKQAVMNLIDNAIKYTQPEGHINVSAYIKENNALIIVKDNGVGIPKEDISRVFERFYRVD 539

Query: 172 VESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +    V  +  E    +      +        L 
Sbjct: 540 KSRSRSEGGTGLGLAIVKHIVSELDGSIYLNSELNKGSEFIIQLP 584


>gi|226228668|ref|YP_002762774.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226091859|dbj|BAH40304.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 741

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQ 51
           A+     + S  L A+  L   I HD  + +  + N  E++              DE++ 
Sbjct: 349 AQLESQLMQSQKLEAVGRLAGGIAHDFNNMLTVVRNYAEMVRSELEPESPMSKDMDEILH 408

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R        +D    + +  ++++  +      ++        +
Sbjct: 409 ATSHAAQLIRQLLAFSRQQILQPVRLDLNDVIRNAHRMLQRVLPSHVEFRLDLGHPISTV 468

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSK----------------NENIFSLK 152
             +  +I   L      A  ++P+GG++T     S+                     ++ 
Sbjct: 469 LADPGQIEQVLMNLTVNASDAMPQGGRLTFRTTMSELDDTTEPAAAGVVGARRYVCLTVV 528

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G          +I +    +        +    V  +  +    +             
Sbjct: 529 DTGIGM-DHATTARIFEPFFTTKPVGKGTGLGLAGVHGIIAQLGGSIWVYSQPGRGTTFK 587

Query: 211 ALLE 214
             L 
Sbjct: 588 VYLP 591


>gi|217077839|ref|YP_002335557.1| sensor histidine kinase [Thermosipho africanus TCF52B]
 gi|217037694|gb|ACJ76216.1| sensor histidine kinase [Thermosipho africanus TCF52B]
          Length = 465

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAII 62
            +        +     + I H++ +P+ AI    E LL+     +   + +      +  
Sbjct: 230 ELEKLKQLDKMKTEFVANISHELRTPLTAIKAYTETLLNMEVDRESQREFLETVYEQSER 289

Query: 63  RLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               +                  S   L  L          +A   +V+++ + E I +S
Sbjct: 290 LESLLNDLLDFTLIESGTMELEYSEFDLCELIKEVVENLKQLAEKYKVKINVSCESISIS 349

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLARFPE---K 163
            ++ +I   +      +     +  +           +      ++ NG      +    
Sbjct: 350 ADKRRIKQAIHNLVDNSIKFSDKSKEERYVNISVEKKEENLSIIIEDNGIGISQEDKEKI 409

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   G+      +    +    V  +   +  ++              ++ 
Sbjct: 410 FEKFYRGDRSLTYEVPGTGLGLTIVQEIIKLHGGKINVNSTLGEGTTFELVIP 462


>gi|39995824|ref|NP_951775.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39982588|gb|AAR34048.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298504836|gb|ADI83559.1| sensor histidine kinase response receiver, PAS domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 589

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 64/254 (25%), Gaps = 42/254 (16%)

Query: 2   AKNICFNLSSMDL-----VALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDE 48
            K    N S  +L      A   SR        + H+I +PI  +   L+L+ +  + DE
Sbjct: 166 RKERELNESREELCWAKEAAEDASRAKSEFLANMSHEIRTPINGVLGMLQLVLDTELGDE 225

Query: 49  VMQLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV- 96
               + ++  SA                  R     +   D    +    +++       
Sbjct: 226 QRHCLEMAKRSADALLRLVNDILDFSRIEARKMVFESRPFDLTACVNSAVEILAFEARRK 285

Query: 97  ----DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG------KVTISVQDSKNE 146
                 R+        +       ++L+NL   A     RG       +        +  
Sbjct: 286 GLAVMVRMGPDVPAAVVGDEARLRQVLVNLIGNAVKFTDRGKVEVTAARAERQSDPLRTA 345

Query: 147 NIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPE 200
              S++  G      E+  ++                   +       +       +  E
Sbjct: 346 IRISVRDTGIGIAPQER-ERLFRVFSQVDGACNRRFGGTGLGLALTRDIVEAMGGAIDVE 404

Query: 201 IIDDHNVVLSALLE 214
                    +  + 
Sbjct: 405 SQSGQGSTFTITIP 418


>gi|27381827|ref|NP_773356.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27354996|dbj|BAC51981.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 625

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53
           A+        M+ V  L   I H+  + +  I  ++E+L +   ++  +        +  
Sbjct: 207 AEEQLIQAQKMEAVGQLTGGIAHEFNNMLTVITGTIEILADAVKDNPPLATITKLISEAA 266

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +      L F R        +D    L ++ +++         +      +      
Sbjct: 267 DRGAALTSSLLSFARKQALQPTEIDVNELLEELAKLLLATFDKKIEIVTKLDSKVWLAFV 326

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQ---------------DSKNENIFSLKING 155
           +R ++   L      A  ++  GG++T++ +                + +     +   G
Sbjct: 327 DRGQLSSALLNLAINARDAMLDGGRLTLTTRNVVFGVREAVAVGAGYAGDYVEIEIADTG 386

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I D    +        +    V     ++   +     +      +  L
Sbjct: 387 TGI-RRAILERIFDPFFSTKEVGKGTGLGLSMVFGFVKQSGGGIKVASEEGRGTTFTIYL 445

Query: 214 EK 215
            K
Sbjct: 446 PK 447


>gi|313889990|ref|ZP_07823627.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313121648|gb|EFR44750.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 444

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 61/223 (27%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             L     S   H++ +P+ +I    E + +      +   + + +    ++     +  
Sbjct: 215 EKLNMDFVSNASHELRTPVTSIRGFAETIKQMSEDDIELKEEFLDIIYKESLRLEHIVEH 274

Query: 70  A------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                               D L  +G+  +   D        +++            ++
Sbjct: 275 MLALSKVKNTQLQKTQFSINDFLHDIGNSMKHQLDQKKQSLAFELTQDFAVETDKYLLSQ 334

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +LLNL   A      GGK+T+S    + +   S+   G   R  E   +I +        
Sbjct: 335 VLLNLLSNAIRYTDEGGKITLSTVFDEQKLKISVSDTGIGIRQMEL-ERIFERFYRVNKG 393

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  L       +            +  L 
Sbjct: 394 RSRQSGGTGLGLSIVKELIQLLGGTVTVRSQLGEGSQFTISLP 436


>gi|148254486|ref|YP_001239071.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146406659|gb|ABQ35165.1| multi-sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 587

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
           +A++      +        + + H++ +P+ AI    E+L +            +  +L 
Sbjct: 318 LARSAAERADAAK--TRFLATMSHELRTPLNAIIGFSEMLMQEQALVLNAARRREYAQLI 375

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------Q 101
           + S    L  +      +        L          +     +                
Sbjct: 376 NDSGQHLLSVVNGILDMSKMESGNFELTPEPFAPRAALINCCNLLALRARENGVDLSADV 435

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      R   +I++NL   A     RGG+V +S      + +  +   G      
Sbjct: 436 PHDLPTITGDPRAFKQIVINLVSNAIKFTERGGRVMVSAAIEGPQLLLRITDTGVGIAAD 495

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D         +   +   +    V  L + +   +  E   D    +S  L 
Sbjct: 496 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVNLHGGEMSIESKLDEGTTVSIALP 553


>gi|82702418|ref|YP_411984.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410483|gb|ABB74592.1| multi-sensor signal transduction histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 662

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 64/231 (27%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM-- 50
           +  ++      +   A +   + HD+ +P+ AI    + L        D+ G E   +  
Sbjct: 423 LMADLESANEELKSFAYV---VSHDLKAPLRAIGALADWLSTDYLDKFDDEGREHMRLLV 479

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKI 109
             +          L++ R+       V+  +     + +     + +  + V  T    +
Sbjct: 480 SRVHRMGNLIDGILQYSRVGRVREAPVEVKVDEVLRDVIDFIAPSPNVTITVENTLPSIV 539

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV 168
                  +I  NL   A   + +                 FS+  NG        F +I 
Sbjct: 540 IEPTRIQQIFQNLLSNAIKYMDKPQCEIRIGCIAEGEHWRFSISDNGPGIESRH-FEKIF 598

Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      ++S  +    V  +       +  E            L K
Sbjct: 599 QLFQTLAPRDRVESTGVGLTLVKKIVEMYGGSIWVESTPGEGTTFFFTLPK 649


>gi|78358637|ref|YP_390086.1| periplasmic sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78221042|gb|ABB40391.1| periplasmic sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 479

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFN--LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIR 54
           + K         S  L ++  + + I H+I +P+G I +S ELL     + + +  ++++
Sbjct: 244 LEKERLERDLHQSEKLASMGRMVASIAHEIRNPLGIISSSAELLLRRTGDADPLTGRILQ 303

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                A    + +     Y           DI  V+       +              +E
Sbjct: 304 AIFDEAKRLGQTVNDFLDYARPRRPGRDPVDIAAVLRQATGFMEGEFARSQVALHADLQE 363

Query: 115 R----------AKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159
                       +   NL   +  ++  G          +      +    +  NG    
Sbjct: 364 GLLVAGDKDLLYRAFYNLMANSLQAMQGGTVQDATLTLCTRMTRDGQVEVRIADNGPG-F 422

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +++D    +  +   +    V  +   ++  +      +    +   L 
Sbjct: 423 PRQGREKLLDPFYTTRDEGTGLGLAIVNNIITSHEGSMELTDAPEGGAEVRVTLP 477


>gi|302338876|ref|YP_003804082.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
 gi|301636061|gb|ADK81488.1| histidine kinase [Spirochaeta smaragdinae DSM 11293]
          Length = 391

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 14/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIR 54
           +       L S  L  L    S I HDI +PI  +    +LL           + ++ IR
Sbjct: 161 LQTAQSELLKSERLSTLGKFSSMILHDIRNPISVVKAYTDLLLISEGIPQKNMDYIRNIR 220

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVSWTG 106
             +         +         +D            L +  +        +  ++    G
Sbjct: 221 FEAERLNQLANELLDYSRGEIRLDMGSVDLDGFFLRLEEWVRRRFASRRCEITLRNGHQG 280

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I       + L NL   A  ++  GG  +++ +D+    +F++   G           
Sbjct: 281 PVIFDQERMFRALTNLSDNARKAMTMGGSFSLTAEDNDGWLLFTVSDTGEGMNKEVLERV 340

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S      +    V      +   +  +        +   + 
Sbjct: 341 FEPFYSSSKGGGTGLGMAIVKSTVEAHGGNIEIDSAPGKGTRIFLRIP 388


>gi|229128913|ref|ZP_04257889.1| hypothetical protein bcere0015_33580 [Bacillus cereus BDRD-Cer4]
 gi|228654618|gb|EEL10480.1| hypothetical protein bcere0015_33580 [Bacillus cereus BDRD-Cer4]
          Length = 490

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 255 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 314

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 315 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 374

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 375 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 433

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 434 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 480


>gi|114561405|ref|YP_748918.1| osmolarity sensor protein [Shewanella frigidimarina NCIMB 400]
 gi|114332698|gb|ABI70080.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
          Length = 446

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  D+  +++ ++  I     
Sbjct: 225 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEDDQYLKEGIVTDIEDMDA 281

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R         D +  L       E        + ++   +    S    ++
Sbjct: 282 IINQFIAYIRNDREGVREPDQINRLIQEISQQESHREETIELSLADCPDVPMNSVAIKRV 341

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS     N   FS++ NG      E    F     G+    
Sbjct: 342 LSNLVENAFRY--GNGWIKISSYHQGNAVCFSVEDNGPGINEAEVEHLFQPFTQGDTARG 399

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   +  ++         +     L 
Sbjct: 400 SIGSGLGLAIIKRIIDRHHGKVKLSNRPQGGLKAQVWLP 438


>gi|256004534|ref|ZP_05429513.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255991539|gb|EEU01642.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316940005|gb|ADU74039.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 504

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           N+   L +++ +     + + H++ +P+ +IH  +E + +       E + + ++R    
Sbjct: 265 NMAGELQNLENMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPPEKEKDYLLIVRDEIR 324

Query: 59  SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                   +                 +  +      +  +E  I       +        
Sbjct: 325 RLNRLTTDLLDLAKMEAGEITINPVNFNINELIRRCIIKLENFITQKDIEVEANFEEEDM 384

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     ++L+NL   A   + + GK+ +S    KN+ +  ++ NG      E    
Sbjct: 385 YVKADIDSIERVLINLMHNAVKFVQQNGKIKVSTSSYKNKVLVCVEDNGIGIDRNEIDLI 444

Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +    +           +    V  + +++K  +  E            L+K
Sbjct: 445 WERFYKSDKSRSKEKGGAGLGLAIVRNIINDHKQEIWVESEVGKGTKFYFTLDK 498


>gi|239834065|ref|ZP_04682393.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
 gi|239822128|gb|EEQ93697.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
          Length = 901

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 54/233 (23%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------L 55
           +       +  L + L + I HD+ +P+ AI  +   L +                    
Sbjct: 659 ERAKLAAEADKLRSALLTSISHDLKTPLAAILGAATTLRDYSASLPDADRSELVATVVDQ 718

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------G 106
           S          + +     G++   + L  +  +I   +    R+               
Sbjct: 719 SERLNRFIANLLDMTRIEAGAMKPNLSLHFVGDLIGAALNRASRILACHQVNVAVPVNLP 778

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +    + L NLF  A    P    +T+      +     +   G      +    
Sbjct: 779 MVHLDAVLFEQALFNLFDNAAKYAPENSPITVKAHADTSNITLEISDRGPGIPHDDLEHV 838

Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                     D       +               +      +    V +  L 
Sbjct: 839 FDTFYRVRKGDHVQAGTGLGLPIARGFIEAMGGSIRAGNQQEGTGAVFTVTLP 891


>gi|308535234|ref|YP_002138198.2| CHASE/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|308052579|gb|ACH38402.2| sensor histidine kinase response regulator, CHASE and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 848

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +        M+ V  L   + HD  + +  I  + EL    L+E    D  +++I  ++ 
Sbjct: 469 EEQYRQSQKMESVGRLAGGVAHDFNNMLSVILGAAELSRRKLEEGEPIDAYLEVITNAAK 528

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        +D    + +  +++   I+ D  +  +       +S +
Sbjct: 529 RSSEITRQLLAFSRKEVVSPRPLDLNQLIRESNKILARLISEDINLSFTPDPGLWLVSID 588

Query: 115 RAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
            +++   L      A  ++P                            +    ++   G 
Sbjct: 589 PSQVDQILMNLAVNARDAMPNGGRLSIETRNLRLTGDCSHVHPDAHPGDYVQLTVSDTGQ 648

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     I +    +        +    V  +  +N+  +          V    L 
Sbjct: 649 GMDKATV-EHIFEPFFTTKELGKGTGLGLATVYGIVTQNRGFINVYSEPGQGTVFRINLP 707

Query: 215 K 215
           +
Sbjct: 708 R 708


>gi|83312834|ref|YP_423098.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947675|dbj|BAE52539.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 992

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 56/239 (23%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+ +    +     A L   + H+I +P+  +     LL +  ++ E          SA 
Sbjct: 347 AQQVAERANQAK-AAFLA-TMSHEIRTPMNGVIGMTGLLLDTQLDPEQRHFATTIRDSAE 404

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------------IEDFIAVDKRVQVSWT 105
             L  +     ++      + L   +                      I +   V     
Sbjct: 405 SLLTVINDILDFSKLEAGKLDLESTDFELVGLVESIVDILAPRAHAKGIEIASMVDPDLP 464

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +IL+NL   A                +  D      F ++  G      
Sbjct: 465 AWVRGDPGRLRQILMNLAGNAIKFTSHGGISIEVRDETSPDGAGRLRFDVRDTGIGI-PQ 523

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++    ++             +       L       +  E       +    L 
Sbjct: 524 DAIGRLFSMFMQVDASTARRYGGTGLGLAISKRLTEMMGGTIGVESTPGAGSLFWFSLP 582


>gi|125973802|ref|YP_001037712.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281417958|ref|ZP_06248978.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|125714027|gb|ABN52519.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281409360|gb|EFB39618.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 504

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           N+   L +++ +     + + H++ +P+ +IH  +E + +       E + + ++R    
Sbjct: 265 NMAGELQNLENMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPPEKEKDYLLIVRDEIR 324

Query: 59  SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                   +                 +  +      +  +E  I       +        
Sbjct: 325 RLNRLTTDLLDLAKMEAGEITINPVNFNINELIRRCIIKLENFITQKDIEVEANFEEEDM 384

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     ++L+NL   A   + + GK+ +S    KN+ +  ++ NG      E    
Sbjct: 385 YVKADIDSIERVLINLMHNAVKFVQQNGKIKVSTSSYKNKVLVCVEDNGIGIDRNEIDLI 444

Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +    +           +    V  + +++K  +  E            L+K
Sbjct: 445 WERFYKSDKSRSKEKGGAGLGLAIVRNIINDHKQEIWVESEVGKGTKFYFTLDK 498


>gi|320451054|ref|YP_004203150.1| signAl transduction histidine kinase containing a receiver domain
           [Thermus scotoductus SA-01]
 gi|320151223|gb|ADW22601.1| signAl transduction histidine kinase containing a receiver domain
           [Thermus scotoductus SA-01]
          Length = 723

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +     L S +  + L   + H+I +P+ ++  +LEL  E         E++ +   S
Sbjct: 76  LRERELALLKSQEETSRLLGLLLHEIKNPLMSVLGALELTLEVEGLPEEAKELLSIAEKS 135

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      L   R        V             L   E++          +++     +
Sbjct: 136 ARRIQDLLNKAREYLRLGQGVRLKSERVDLKALLLQVAEEMRPLARRKGIALRLILPKRE 195

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +R    + +LN+   A    P GG+V + +     +   ++   G      E+  
Sbjct: 196 AWVYGDREWLYQAVLNVVNNAIKYTPEGGRVAVRLLVGPEQYGIAVSDTGPGI-PKEEQE 254

Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++ +          ++   +    V  +   +   +              LL +
Sbjct: 255 RVFEPFYRASTRGEVEGTGLGLALVKRVLEAHGGEVRLRSRLGQGSTFLLLLPR 308


>gi|317151792|ref|YP_004119840.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942043|gb|ADU61094.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 584

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMD----LVAL--LCSRICHDIISPIGAIHNSLELLDEV------------- 43
           +     L  M+    + ++  L + + H+I +P+  I+    L+ ++             
Sbjct: 336 QTRANALHQMEHTNRMASIGRLAAGVAHEINNPLAIINEKAGLIKDLFSFKEQYAHDRRL 395

Query: 44  -GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQ 101
               D ++  +          L F R        +       ++   + ++    +  + 
Sbjct: 396 LANIDSILASVERCGRITKRLLSFARHIDVNVEVLRFKDVAEEVLSFLHKEAEYRNIAIV 455

Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNL 157
           +S      +   +R    +I LNL   A  ++  GG+    + +   +   F+++ NG  
Sbjct: 456 MSIPENMPEFVSDRGKLQQIFLNLVNNAFQAMNDGGRLSISAARGEGDTLDFTVRDNGCG 515

Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++  +I +    +        +       L  E    +  E         +  L 
Sbjct: 516 IPEADRK-RIFEPFFSTKKKTGGTGLGLSITYGLVQELGGSMAVESEVGKGTAFTITLP 573


>gi|260913806|ref|ZP_05920281.1| aerobic respiration control sensor protein ArcB [Pasteurella
           dagmatis ATCC 43325]
 gi|260632119|gb|EEX50295.1| aerobic respiration control sensor protein ArcB [Pasteurella
           dagmatis ATCC 43325]
          Length = 617

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 65/237 (27%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   L +++  +     L + I H++ +P+  I     +L +  + D+    ++   
Sbjct: 105 EKKLSIALDNIEKTSRDKTQLMATISHELRTPLNGIIGLSRILLDSELTDKQRDYLKTIH 164

Query: 58  MSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---- 102
           +SAI                          V+    L DI        A  K        
Sbjct: 165 ISAISLGHIFSDIIDLEKIDARRIELSPKEVELQHLLADISNFGTLMAADKKLCFQLIES 224

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +      ++IL NL   A     +G  V ++V  ++N   F +   G      
Sbjct: 225 SPLPQWLMLDYARVSQILWNLIGNAVKFTSKGS-VQLNVSTNENNIYFIVSDTGVGIPQE 283

Query: 162 EKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E            +         I       +A      L  E         +  L 
Sbjct: 284 ELHRVFEMYYQVKSSGQKPLGSGIGLAVSKTIAQLMGGDLTVESELGKGASFTLTLP 340


>gi|218134830|ref|ZP_03463634.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990215|gb|EEC56226.1| hypothetical protein BACPEC_02733 [Bacteroides pectinophilus ATCC
           43243]
          Length = 473

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 58/216 (26%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-YT 74
           S I HD  SP+ +I   LE + +      +  + + ++   +         +        
Sbjct: 250 SNISHDFRSPLTSIKGYLEAMSDGTIPPELHQKYIGIVLFETERLTKLTNNLLTLNDLDP 309

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLF 123
            SV       DI  VI   I   + V                        +  +++ NL 
Sbjct: 310 KSVRLNYSDFDINDVIRHTIETFEGVCTEKKITFKLTFSSRQLMVHADMEKIQQVVYNLV 369

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID--S 178
             A         + IS          S+K NG      +    + +    +     D   
Sbjct: 370 DNAVKFSHPDSFIAISTTTKNGRAFISVKDNGIGIPKDDLKKIWERFYKTDNSRGRDKKG 429

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   +  R+     +         L+
Sbjct: 430 SGLGLAIVREIIQTHGERIDVISTEGVGTEFVFSLK 465


>gi|172060667|ref|YP_001808319.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171993184|gb|ACB64103.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1240

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 23/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
           +R+ H+I +P+  +    ELL    +  +  + +     S    L  +     ++     
Sbjct: 568 ARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627

Query: 78  ---------DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123
                    +    L D+  ++E            +   S             +IL NL 
Sbjct: 628 KLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLL 687

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A      G     +        +F +  +G     P+   Q+     +          
Sbjct: 688 GNAIKFTEHGHVALSAEYSDDGRIVFKIADSGIGI-APDVAAQLFRPFQQADSSTARKYG 746

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       LA      L  +       V +    
Sbjct: 747 GTGLGLAISRQLAEMMGGTLALDSTPGKGSVFTVTTP 783


>gi|150006769|ref|YP_001301512.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935193|gb|ABR41890.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 622

 Score =  114 bits (285), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 61/228 (26%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK        +   +   + + H+I +P+ AI    +LL   +++ +    + LI++++ 
Sbjct: 388 AKEKAEEADMLK--STFLANMTHEIRTPLNAIVGFSDLLGVEEDLELRQNYISLIKMNND 445

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEK 108
             +  +            +       V     + D+   I+        + +        
Sbjct: 446 LLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRKPEGVEITLDACPDIIF 505

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167
                   +I +NL   A     +G        +D      F +   G      E     
Sbjct: 506 NIDRNRLWQICMNLLTNAVKHTKKGSIWFGYTLEDEGKMVKFYVSDTGCGIPKDELDNIF 565

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 S  +    +       L  +    +     +         L 
Sbjct: 566 ARFVQLSDFEQGVGLGLAICKGLVLKMGGNISVMSKEGFGSTFIFTLP 613


>gi|253568339|ref|ZP_04845750.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251842412|gb|EES70492.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 908

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           MA+ +       +L   L     + + H+I +P+ AI    EL+   ++   ++E M +I
Sbjct: 532 MAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPAEKEEYMSII 591

Query: 54  RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           + ++   +  +             +               L  + Q       V+ ++  
Sbjct: 592 QSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCGELYTMIQPKITNPDVEFQMAN 651

Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           S     I        ++ +N    A      G        +        ++ +G      
Sbjct: 652 SGPDCWIFLDRNRLKQVWMNYLTNAIKCTKSGHIKMGYGIERGG-IRIYVEDSGVGIPI- 709

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++               +       +       +      D      A + 
Sbjct: 710 ELQERVFGRFQKLNEFAQGTGLGLAISRAIIEGAGGEVGFTSTPDVGSTFWAWIP 764


>gi|239907078|ref|YP_002953819.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239796944|dbj|BAH75933.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 666

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 58/241 (24%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------------- 42
           + +     + +  +  L  + + I H++  P+ AI    + L                  
Sbjct: 417 LVEKDAQLIQASKMKTLGEMSAGIAHELNQPLNAIKMGSDYLKMVAETGGLPSPVALAAV 476

Query: 43  VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            G   E +              +       Y    + + G+  I         ++  +++
Sbjct: 477 TGQVSEQVDRAAAIIGHLRDFGRKSEPKLEYVDINEPIKGVFTIIGHELALQGIEVVLRL 536

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-------SKNENIFSLKING 155
           +        +    ++  NL + A  ++          +               S+   G
Sbjct: 537 AAVAPIKAHANRLEQVFFNLVVNARDAMTGISCPAERPRRLTIVSESRDGLVDVSVADTG 596

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I +    +        +       +  +    +  E   +   V     
Sbjct: 597 CGI-PEAARRKIFEPFFTTKQTGQGMGLGLAITYGIVRDYGGEIEVESAPEKGSVFRLTF 655

Query: 214 E 214
            
Sbjct: 656 P 656


>gi|254447054|ref|ZP_05060521.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198263193|gb|EDY87471.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 821

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 62/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +     L +  L +   + + H++ +P+ ++     +L       + ++ +  +    
Sbjct: 309 LEQANQELLEADRLRSEFVANMSHELRTPLNSVIGFSSVLMKNRNQSLLEKDLNFVEKIH 368

Query: 58  MSAIIR------LKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWT 105
            +          +  +         V+    L           +     A +  ++V   
Sbjct: 369 RNGKHLLSLINDILDLSKIEAGRMEVELRPVLVQDVVRDTSEMLQTQAEAKNVALRVEGQ 428

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEK 163
            +   +  +  K+   L  +   +L    +  VT+ V          +   G      + 
Sbjct: 429 LDLPYIQTDGDKLRQVLINLVGNALKFTERGSVTLKVGVESQWLRIDVIDTGIGIAEDKL 488

Query: 164 F-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  D           +       +      R+  + +       S  L 
Sbjct: 489 MTVFEPFRQADAGTTRQYGGTGLGLAITRSIVEMLDGRVELDSVQGQGSTFSVYLP 544


>gi|220918949|ref|YP_002494253.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956803|gb|ACL67187.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 592

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 60/248 (24%), Gaps = 35/248 (14%)

Query: 1   MAKNICFNLSSMDL-----VALLC-----SRICHDIISPIGAIHNSLELLDE-------V 43
           +A      L +  L      A+       S   H++ +P+ A+  +LE +          
Sbjct: 328 LAHRAAQALENARLYGEAQAAVAARDEFLSIASHELRTPLTALRLALENMRRVASREALE 387

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +    ++ +  ++     RL+ +  A      +       +IE V       +   QV 
Sbjct: 388 SLPAAYVERVLATAERQGQRLEKLVAALLDVSRIHMGRLELEIEDVDLGHAVSEAVAQVE 447

Query: 104 WTGEK--------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
               +                     +++  NL   A                       
Sbjct: 448 DEAAQAGSQVTVQGEPVRGRWDRLRISQVATNLLSNAVKYGAGKPVEVSFGTRDGR-AYL 506

Query: 150 SLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
            ++  G      +    F +              +  Y V  +   +   +  E      
Sbjct: 507 RVRDQGIGIDPADQRQIFERFERAVSSRNYGGLGLGLYIVKRIVEAHGGAVRVESAPGEG 566

Query: 207 VVLSALLE 214
                 L 
Sbjct: 567 AAFEVTLP 574


>gi|116617704|ref|YP_818075.1| Signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|116096551|gb|ABJ61702.1| Signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 326

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 71/231 (30%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           M  ++   L    + A   +   H+  +P+ AI   +E L      +     + +Q++  
Sbjct: 95  MLYDLTEVLKLERMQADFLANASHEFKTPLTAITGFVETLQGDAGADEETRTQFLQIVAD 154

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +      +  +         VD  I       + + +    D   +     ++      
Sbjct: 155 EAKRLSALVNDILSLSRMQHKVDEKISNLEISAIVEQQLEKIDTKTITVHNDIAPDFSVS 214

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
            ++ + + I+ NL   +       G+V IS      +    +  +G      +    F +
Sbjct: 215 GIASDVSTIVQNLLTNSVKYNKIDGEVWISAYKDTQQWQIKVSDSGIGIPLNQQSRIFER 274

Query: 167 IVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              G+            +    V  + +++   +  +        +S +L 
Sbjct: 275 FYRGDESRQRKIASGTGLGLAIVNEIVNQHNGEINIKSQVGVGTTISVILP 325


>gi|70726426|ref|YP_253340.1| respiratory response protein SrrB [Staphylococcus haemolyticus
           JCSC1435]
 gi|68447150|dbj|BAE04734.1| staphylococcal respiratory response protein SrrB [Staphylococcus
           haemolyticus JCSC1435]
          Length = 585

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 54/218 (24%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           + + H++ +PI  +    E + +          + + ++   +      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPEEIRDSLSIVLDETKRLNRLVNELLNVARMD 424

Query: 75  GS---VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KIDLSRERAKILLNL 122
                V+                   +   +                  +    ++L NL
Sbjct: 425 AEGLTVNKEKQPIKPLLSKMQMKYRQQAEDLELNMSLEPNIDDELWEYDADRIDQVLTNL 484

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTID 177
              A      G  ++I+     +     +K  G+          F +      +      
Sbjct: 485 IDNATRYTQPGDSISITTTTDDSYQTLHIKDTGSGISPEHLELVFDRFYKVEASRTRGKQ 544

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   ++  E+   +  E   +        L K
Sbjct: 545 GTGLGLFICKMIIEEHGGTIKVESKVNKGTTFIIKLPK 582


>gi|128598|sp|P19906|NTRB_VIBAL RecName: Full=Nitrogen regulation protein ntrB
          Length = 350

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+++  +  + +   +    A
Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIVIERDYDPSLPEILMDA 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  +  K      +  NG     
Sbjct: 236 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 347


>gi|319653495|ref|ZP_08007594.1| hypothetical protein HMPREF1013_04211 [Bacillus sp. 2_A_57_CT2]
 gi|317394694|gb|EFV75433.1| hypothetical protein HMPREF1013_04211 [Bacillus sp. 2_A_57_CT2]
          Length = 419

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 74/230 (32%), Gaps = 18/230 (7%)

Query: 2   AKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
            +N+      + +  L A+  + + I H+I +P+ A    ++LL E  +           
Sbjct: 182 KRNLDIRENLVRAEKLEAVEQMGAAISHEIRNPLTAAIGFVQLLQEQRLPPRKRVEYLGI 241

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++       + +   K              L+ + +I +   +  +V+     +  
Sbjct: 242 VKAELESAEQVIQNYLTFSKPSLDKIEEINVKKELMQVMNILKPTANQNSVEINAHFALL 301

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           G      ++  +  LN+   +  ++PRGG++ I    S ++    +K  G      +   
Sbjct: 302 GSIKGDRQKFHQCFLNVIKNSIEAMPRGGQLYIETHYSSSQITIEIKDTGVGMTSDQL-Q 360

Query: 166 QIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +    +       +    V  +       +  +       V      
Sbjct: 361 RLGEPYYSTKGSKGTGLGMMVVFSIVRAMDGNVRVKSEVGKGTVFRFTFP 410


>gi|317478508|ref|ZP_07937667.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
 gi|316905322|gb|EFV27117.1| response regulator receiver domain-containing protein [Bacteroides
            sp. 4_1_36]
          Length = 1326

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +     L+ M L     + I HD+ +P+  I + L++L    ++D + + +   + +A
Sbjct: 813  LEQEQKLLLNEMKLK--FFTNISHDLRTPLTLIISPLQMLLSETLDDGIRKKLNTINKNA 870

Query: 61   IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
               L  +                 +     V+ +  +    Q       +          
Sbjct: 871  QQLLTSINSLLDFRKLDVGAETAHYKSGDIVNFIREICSTFQEYALDHTISFCFMCEVEN 930

Query: 107  -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                    +  K++ NL   A    P  G++ + +    +     +  NG      +   
Sbjct: 931  LNMSFDPVKIKKVMNNLLSNAFKYTPDKGEINVHLYREDDNVCICVADNGQGIIDKDKKH 990

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +       S      I  +      H +K  +          V +  L 
Sbjct: 991  IFERFYQVQQTSEKTGSGIGLHIANEYVHLHKGTISVTDNFPKGSVFTVKLP 1042


>gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 498

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 65/230 (28%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
            + +  + + ++  A + S   HD+ +P+  I +  +LL+       +      + ++I+
Sbjct: 268 EEELARSNAELEQFAYVAS---HDLQAPLSTIASYAQLLEGRYRDKIDANAMKFIQKMIK 324

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEK 108
            S     +    +  +     S D      +         +          V        
Sbjct: 325 GSVRMQSLIDDLLEYSRVSKKSKDFEPTDCNQIFEEACGNLHLAIRKNQATVSRCDLPTV 384

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE---KF 164
           I    +  ++  NL   A         +   + +  + + +FS+  NG           F
Sbjct: 385 IGDCSQMVQVFQNLIGNAIKYRRDEPPIIHLNAERRETDWLFSVSDNGIGIDSKHSERIF 444

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 + +       I       +   +  ++  E       +    L 
Sbjct: 445 QIFQRLHTQEEYTGTGIGLAICQKIVERHGGQIWVESQLGAGAIFYFTLP 494


>gi|270295515|ref|ZP_06201716.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274762|gb|EFA20623.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1336

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +     L+ M L     + I HD+ +P+  I + L++L    ++D + + +   + +A
Sbjct: 823  LEQEQKLLLNEMKLK--FFTNISHDLRTPLTLIISPLQMLLSETLDDGIRKKLNTINKNA 880

Query: 61   IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
               L  +                 +     V+ +  +    Q       +          
Sbjct: 881  QQLLTSINSLLDFRKLDVGAETAHYKSGDIVNFIREICSTFQEYALDHTISFCFMCEVEN 940

Query: 107  -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                    +  K++ NL   A    P  G++ + +    +     +  NG      +   
Sbjct: 941  LNMSFDPVKIKKVMNNLLSNAFKYTPDKGEINVHLYREDDNVCICVADNGQGIIDKDKKH 1000

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +       S      I  +      H +K  +          V +  L 
Sbjct: 1001 IFERFYQVQQTSEKTGSGIGLHIANEYVHLHKGTISVTDNFPKGSVFTVKLP 1052


>gi|260173568|ref|ZP_05759980.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921835|ref|ZP_07918075.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695710|gb|EFS32545.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 1007

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI    EL+    E    D +  +   + 
Sbjct: 630 LQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAGEEEKADYIQIINSNNE 689

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +   +    + L+    GSV+      D                 +  + ++        
Sbjct: 690 LLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVLTEINPYHCC 749

Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    A+I+ N    A     +G               F +K  G      +K   
Sbjct: 750 QVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGG-VYFYVKDTGIGIADDKKGKV 808

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +A     ++  E + +   +  A L 
Sbjct: 809 FQRFEKLDEFAQGTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFLP 857


>gi|228939122|ref|ZP_04101717.1| hypothetical protein bthur0008_17830 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971999|ref|ZP_04132617.1| hypothetical protein bthur0003_17770 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978609|ref|ZP_04138982.1| hypothetical protein bthur0002_18130 [Bacillus thuringiensis Bt407]
 gi|228781105|gb|EEM29310.1| hypothetical protein bthur0002_18130 [Bacillus thuringiensis Bt407]
 gi|228787713|gb|EEM35674.1| hypothetical protein bthur0003_17770 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820545|gb|EEM66575.1| hypothetical protein bthur0008_17830 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 351

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 70/232 (30%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +               +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           F +    +           +    V  +   ++  +  E  + +       +
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCI 345


>gi|217076268|ref|YP_002333984.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
 gi|217036121|gb|ACJ74643.1| alkaline phosphatase synthesis sensor protein PhoR [Thermosipho
           africanus TCF52B]
          Length = 424

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 60/220 (27%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM------- 67
           S + H++ +P+ +IH   E L     ++  +  + + +I   +      +  +       
Sbjct: 194 SNVSHELRTPLTSIHGYAEALLEDDLEDKELIRKFLSIIESEAARMTRLINDLLDLEKLE 253

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
               +  F      + L  + +I + +     V+           +       ++ LNL 
Sbjct: 254 SGNTQFVFEKINFTEVLEHVRNIIEPLAKDYQVEVEFVYPDELYLVGDKDRLTQMTLNLV 313

Query: 124 MVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR---FPEKFTQIVDGN--VES 174
             A        K    V        N     +K  G         + F +    +     
Sbjct: 314 DNAIKYTSLKEKGKKKVTVEAWKENNSIKLVVKDTGVGIPEKAQKKLFERFYRVDKARSR 373

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V  +  ++   +     +         L 
Sbjct: 374 KMGGTGLGLSIVKTIVEKHNGVIEFTSKEGVGTKFVVTLP 413


>gi|160891349|ref|ZP_02072352.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492]
 gi|156858756|gb|EDO52187.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492]
          Length = 1336

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +     L+ M L     + I HD+ +P+  I + L++L    ++D + + +   + +A
Sbjct: 823  LEQEQKLLLNEMKLK--FFTNISHDLRTPLTLIISPLQMLLSETLDDGIRKKLNTINKNA 880

Query: 61   IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
               L  +                 +     V+ +  +    Q       +          
Sbjct: 881  QQLLTSINSLLDFRKLDVGAETAHYKSGDIVNFIREICSTFQEYALDHTISFCFMCEVEN 940

Query: 107  -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                    +  K++ NL   A    P  G++ + +    +     +  NG      +   
Sbjct: 941  LNMSFDPVKIKKVMNNLLSNAFKYTPDKGEINVHLYREDDNVCICVADNGQGIIDKDKKH 1000

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +       S      I  +      H +K  +          V +  L 
Sbjct: 1001 IFERFYQVQQTSEKTGSGIGLHIANEYVHLHKGTISVTDNFPKGSVFTVKLP 1052


>gi|160886321|ref|ZP_02067324.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
 gi|156108206|gb|EDO09951.1| hypothetical protein BACOVA_04329 [Bacteroides ovatus ATCC 8483]
          Length = 1007

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI    EL+    E    D +  +   + 
Sbjct: 630 LQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAGEEEKADYIQIINSNNE 689

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +   +    + L+    GSV+      D                 +  + ++        
Sbjct: 690 LLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVLTEINPYHCC 749

Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    A+I+ N    A     +G               F +K  G      +K   
Sbjct: 750 QVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGG-VYFYVKDTGIGIADDKKGKV 808

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +A     ++  E + +   +  A L 
Sbjct: 809 FQRFEKLDEFAQGTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFLP 857


>gi|118476035|ref|YP_893186.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118415260|gb|ABK83679.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 340

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + K       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 98  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVATSEIEKQEYLKILYM 157

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    I       + +   
Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 217

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 218 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 277

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E I          + K
Sbjct: 278 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 334


>gi|261253461|ref|ZP_05946034.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio orientalis CIP 102891]
 gi|260936852|gb|EEX92841.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio orientalis CIP 102891]
          Length = 593

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV--GIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +     L++      D+ +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLEKSKYDRVDDNLTR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           I   +         +R     + S +        I     E +   F A    + +    
Sbjct: 418 ISALTDRMAKISSQLRSFAKKSDSDEITRADAAPIIFAAKELLAPQFKANQVTLNLDIEP 477

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFP 161
               +     ++   L  +   ++               Q    +    +  NG      
Sbjct: 478 NLPSIEINPIQLEQVLINLLTNAIQAIEDQQSKQIDLSVQYGNGKVEVLVDDNGPGI-PF 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   Q+ +    +  +   +       +       L               + 
Sbjct: 537 DSQAQLFEPFYTTKKNGLGLGLSISHQITQAMGGELSVTTSPLGGARFILAIP 589


>gi|255007853|ref|ZP_05279979.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313145560|ref|ZP_07807753.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134327|gb|EFR51687.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 631

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 64/233 (27%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            +     L + +   L +   + + H+I +P+ AI     LL   ++     E   +I  
Sbjct: 395 QRLEEARLKAEEANQLKSAFLANMSHEIRTPLNAIVGFSNLLSQVEDKEEMKEYADIIET 454

Query: 56  SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           ++   +  +            +   +    D    + +IEQV +  I  ++ V       
Sbjct: 455 NTDLLLQLISDILDMSKIESGMYDFHITRADVNQMMSEIEQVGKLRIKSEELVLTFDEQL 514

Query: 108 KID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++++NL   A      G               F +   G      E+
Sbjct: 515 PQCILYTDKNRLTQVIINLLTNAIKFTSGGEIRMGYRLKDAATLYFYVSDTGCGM-STEQ 573

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +        I    +      ++  +    +          +    L 
Sbjct: 574 CEHVFERFVKYNPFIQGTGLGLSISRMIIEKLGGEIGVTSEVGKGSLFWFTLP 626


>gi|254881605|ref|ZP_05254315.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642990|ref|ZP_07997624.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|254834398|gb|EET14707.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385355|gb|EFV66300.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 781

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 57/220 (25%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L     + + H+I +P+ AI     L+   D    E     +I  +S   +  +  
Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSRLMTIADNAEDEKLYSDIINQNSEILLQLIND 476

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    + ++ +       V        +    +     
Sbjct: 477 ILDLAKIEAGTLEYIRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +++ NL   A       G++    +  +    F +K  G      +            +
Sbjct: 537 MQVVTNLITNAIKFT-FKGEIRFGFEVREEYIDFYVKDTGMGISEEKIKMIFERFVKLNT 595

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +    +  E   +        + 
Sbjct: 596 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635


>gi|229028449|ref|ZP_04184571.1| hypothetical protein bcere0028_5670 [Bacillus cereus AH1271]
 gi|228732898|gb|EEL83758.1| hypothetical protein bcere0028_5670 [Bacillus cereus AH1271]
          Length = 422

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           +   + + H++ +P+  +    ++ L E    ++ ++ + +    +      ++  F   
Sbjct: 197 SEFLASVAHELRTPLTYVRGYADIALKETTSPEQRLRYLSIIKDESDYITNLVQDLFSLA 256

Query: 75  GSVDSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
                   +   +  +           + +  ++ + VS++           +   ++++
Sbjct: 257 QMEQHNFSIQVKKVHLHTFLTRIAEKVNAMYKERYITVSFSCPPTLVVNLDEQRFEQVII 316

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       +++  G      +                  
Sbjct: 317 NILNNAYRHSKEHSHINISVTEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARSRA 376

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      DH       L 
Sbjct: 377 TGGTGLGLSIVKEIVELHSGNVTVTSEVDHGSCFIISLP 415


>gi|307155195|ref|YP_003890579.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985423|gb|ADN17304.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 404

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 63/243 (25%), Gaps = 29/243 (11%)

Query: 2   AKNICFNLSSM------DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQL 52
            +     L +        L +   + + H++ +PI AI    ++L       +      L
Sbjct: 158 RQRRQIELQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRKYPEPLTCAQTDL 217

Query: 53  IRLSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDK 98
           ++    ++   L  +     ++                    +   +  + +     +  
Sbjct: 218 VQRIFDNSKNLLTLLNDVLHFSKIEAGKLLLHPTELDLKQLTVLTTEELRSLAVSKNLSL 277

Query: 99  RVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +++V     +I   +    +IL+NL   A      GG      +   +    ++K  G  
Sbjct: 278 QIKVELENPQIVNDQSCLRRILVNLLSNAIKFTESGGVWVNVWEMRPDWLAIAVKDTGIG 337

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +       L    + ++          +    
Sbjct: 338 IAEEQLEHIFEVFRQADQTLTRKYGGTGLGLAISESLTKMMQGKISVTSELGKGSIFQIE 397

Query: 213 LEK 215
             +
Sbjct: 398 FPR 400


>gi|319893323|ref|YP_004150198.1| Sensor histidine kinase colocalized with HrtAB transporter
           [Staphylococcus pseudintermedius HKU10-03]
 gi|317163019|gb|ADV06562.1| Sensor histidine kinase colocalized with HrtAB transporter
           [Staphylococcus pseudintermedius HKU10-03]
          Length = 463

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 17/228 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L  +D +       + H+I +P+  IH+ L  L +     +  + I         
Sbjct: 228 TMRLELKQLDDMRQHFVQNVSHEIKTPLTHIHHLLTQLQQEHTTPQQARYIERIYDETHR 287

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWTGEKID 110
             + +R     +   +      D   +                   ++ +        I 
Sbjct: 288 LSQLVRQLLLLSELDNDTHLQFDDTFLANACILDILKHENYAIDQKNQVLLYDLEAVTIR 347

Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +    A+   N+   A       G + I +    ++ I  ++ +G          +I +
Sbjct: 348 GNARLIAQAFENVIRNAIKYTEAFGTIEIDLTAENDQMILKVRDDGPGMNDA-VKQRIFE 406

Query: 170 GNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 S  DS+ +       +   +  R+  E   DH    +  L +
Sbjct: 407 RFYKSSSHTDSNGLGLAISKSIIERHGGRIEVESKIDHGTTFTIFLPR 454


>gi|89896613|ref|YP_520100.1| hypothetical protein DSY3867 [Desulfitobacterium hafniense Y51]
 gi|89336061|dbj|BAE85656.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 383

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 66/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59
           +  +   N        +L + I HD+ +PI +I   LE++ E    E E ++    +  S
Sbjct: 129 LQASERSNQEYEKNRKMLVANISHDLKTPITSIQGYLEVILEGCVSEPEKIKRYLETIYS 188

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----------------IEDFIAVDKRVQV 102
               +  +         +D      + E +                  E       + + 
Sbjct: 189 NTAYMNKLIDDLFLFSKLDMDKLAMNYEVLSIGAYLDDLAAELKFEFEERQFKFSYQNRT 248

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                     +   + + N+   A    P  G  V + +   K++    +  NG      
Sbjct: 249 DRDYTVNIDGKRVYQGIRNIIDNAMKYGPEQGLNVMMELYAQKDDICIDIADNGPGIPEE 308

Query: 162 ---EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F +    + E + D  S  +       L       +       +    +  L 
Sbjct: 309 QLSHIFNRFYRIDTERSKDFVSTGLGLAIAKELIEAQGGTISVASTGGNGSRFTIKLP 366


>gi|60679924|ref|YP_210068.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|60491358|emb|CAH06106.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
          Length = 549

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     ++   L     + + H+  +P+  I + +EL+ +       +           
Sbjct: 9   EKEHIEEMNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHA 66

Query: 62  IRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----T 105
            ++K +          D                 +   +     A  K +          
Sbjct: 67  QQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQD 126

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  K+L NL   A   +P  G+++I    + ++ + ++K +GN     E   
Sbjct: 127 ISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQVVIAVKDSGNGISKEE-QE 185

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I D   ++            I       +   +   +  E   +        L K
Sbjct: 186 RIFDRFYQADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPK 241


>gi|53711679|ref|YP_097671.1| C-terminal part of two-component system sensor histidine
           kinase/response regulator hybrid [Bacteroides fragilis
           YCH46]
 gi|52214544|dbj|BAD47137.1| C-terminal part of two-component system sensor histidine
           kinase/response regulator hybrid [Bacteroides fragilis
           YCH46]
          Length = 549

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 67/236 (28%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     ++   L     + + H+  +P+  I + +EL+ +       +           
Sbjct: 9   EKEHIEEMNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHA 66

Query: 62  IRLKFMRLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----T 105
            ++K +          D                 +   +     A  K +          
Sbjct: 67  QQMKLLISELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQD 126

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  K+L NL   A   +P  G+++I    + ++ + ++K +GN     E   
Sbjct: 127 ISIWIDDWQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQVVIAVKDSGNGISKEE-QE 185

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I D   ++            I       +   +   +  E   +        L K
Sbjct: 186 RIFDRFYQADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPK 241


>gi|310825121|ref|YP_003957479.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398193|gb|ADO75652.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 714

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45
            K +   L+ +  + AL  L   + H+I +P+  I ++L  L+E               +
Sbjct: 318 RKTLETRLAVADRMAALGTLAGGVAHEINNPLTFITSNLLYLEESLGPVAADQLPHIEEM 377

Query: 46  EDEVMQLIRLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
              V      +            F R+       VD   GL     +    +    R+  
Sbjct: 378 RKAVFDAREGAHRVRTIVRELRTFSRVEDARRVPVDVHRGLDFAISMAAQELRPRARLVR 437

Query: 103 SWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKING 155
            +              ++ LNL + A  ++P G     +V    +     +    ++  G
Sbjct: 438 DYGQIPAVLGDETRLGQVFLNLLVNAAQAIPEGNPGEHTVTVHTHLSESGQVQVEIRDTG 497

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +    PE   +I +    +        +       +   +   +          V + LL
Sbjct: 498 SGM-RPEVLARIFEPFFTTKPVGVGTGLGLSICHGIVAAHGGSISARSELGKGTVFTVLL 556

Query: 214 E 214
            
Sbjct: 557 P 557


>gi|308272013|emb|CBX28621.1| hypothetical protein N47_G39450 [uncultured Desulfobacterium sp.]
          Length = 380

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 73/238 (30%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----------VGIEDE 48
            + +   L    +++L  L + + H+I +P+  + N ++L+                   
Sbjct: 128 RRKLKLILHQDKMMSLGRLAASVAHEINNPLSGVLNYIKLMQRIMEKGVLAEDSRKKFIN 187

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVS 103
            ++LI          +  +      +  V + I L  +             +     +++
Sbjct: 188 QLELIESEISRCTQIVSGLLTFSRKSEPVFTRIDLKCLLDRCVLLSRHKMELGKIEFKLN 247

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLA 158
            +    +++ +  ++   +  +   ++               + +K     S+K +G+  
Sbjct: 248 ISPVLPEINGDFNQLQQCVINLIFNAIDAMPDGGTLELSAQNEPAKGFVTISVKDSGHGI 307

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    I +    +  D + I      V  +   +K  +  +       V    L 
Sbjct: 308 TEKDIL-HIFEPFFTTKKDGYGIGLGLSTVYGIMQRHKGSVEAKSRPGKGSVFILRLP 364


>gi|303248423|ref|ZP_07334683.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302490221|gb|EFL50139.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 550

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 67/231 (29%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVG------------IEDEVMQ 51
            S  + AL  L + + H++ +P+  I      + +LL E                 ++  
Sbjct: 318 QSSKMAALGKLAAGVAHEVNNPLAIIMEKAGWMRDLLSEEDIKASPNFQEFADAVSKIEF 377

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKID 110
            +R +       L F R        +D  + L      +  +           +  +   
Sbjct: 378 HVRRAKDVTHRLLGFARRMEPTQEDLDINLLLNQTRSFLENEASFRGITFVSDYQSDLPR 437

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFT 165
           +  +     ++ LN+   A  ++ + G +T++ +          ++   G      E   
Sbjct: 438 IESDTSQLQQVFLNIMDNAIDAIDKNGTITVTTRSLPETGEVDIAIADTGKGM-GKEAME 496

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +    +   +       +  +    +     +         L 
Sbjct: 497 KIFDPFFTTKKVGEGTGLGLTISYSIIEKLGGHIRVTSEEGKGTTFHITLP 547


>gi|170016544|ref|YP_001727463.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
 gi|169803401|gb|ACA82019.1| Signal transduction histidine kinase [Leuconostoc citreum KM20]
          Length = 623

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 64/241 (26%), Gaps = 33/241 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
                + +     +  S + H++ +P+ ++ + ++ L      +  +    + +++  + 
Sbjct: 369 TEQQRIDAER--RMFVSNVSHELRTPLTSVRSYVDALAEGAINDPEMAHNFLGVVQNETQ 426

Query: 59  SAIIRLKFMRL---------------------AFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
             I  +  +                               D +I          +     
Sbjct: 427 RMIRMINDLLELSRLDQGTMAVKLEVINLNSLFNFVLNRFDMIIENDAKNTETPNKNYSI 486

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +R   S          +  ++L N+   A    P GG +T  +  +K   I S+   G  
Sbjct: 487 QREFTSEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGVITARLIKTKTRAILSISDQGLG 546

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +       +  +   R+  + +++        
Sbjct: 547 IPKKDLNNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENQGSTFYIS 606

Query: 213 L 213
           L
Sbjct: 607 L 607


>gi|49479230|ref|YP_037715.1| sporulation kinase A [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49330786|gb|AAT61432.1| possible sporulation kinase A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 510

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       S  L     L + I H+I +P+ ++   L LL     E+    +  + S 
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEHKWYIDVMLSE 334

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            + +     +                        +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G          ++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGIPENRIS-RL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|116747570|ref|YP_844257.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696634|gb|ABK15822.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 571

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 70/233 (30%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     L  +     + + I H+I +P+ A+  ++++L++  I D     +       I 
Sbjct: 337 EEHLKRLERLVFAGRIAAEISHEIKNPLAAMSGAVQMLEDESIPDGSRARLMSIIHREID 396

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEK 108
           R+  +   F +           +   V +                     +   + +   
Sbjct: 397 RMNSLVKDFLWLAKSTHGPENVENVPVCDLIQEILDLLSARNRVASEHVIKTAFAASPIS 456

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPE 162
                   +I+ NL + A  ++P GG       +  S   S  E    +  +G+     +
Sbjct: 457 RIDPHHFRQIVWNLLVNALDAMPGGGHLTIAVGLHPSGDGSGRETRIDISDSGSGI-PRD 515

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALLE 214
             T+I +    +      +    V  L  +   R+      +      S    
Sbjct: 516 ARTRIFEPFFTTKSQGTGLGLSIVYHLVEKANGRIEVTHHEEPCGTTFSLFFP 568


>gi|327484467|gb|AEA78874.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio cholerae LMA3894-4]
          Length = 597

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 66/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + +  L  L  + + I H++ +P+ AI +  +              +E +  
Sbjct: 358 LRQTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFADNGRRFLATNKPERAEENLSR 417

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVS 103
           I   +       + ++     + S +          +    +   +            + 
Sbjct: 418 ISALTERMAKISEQLKSFARKSTSNEQQDVQLYPLILSAKELMTGQFKAQMTLLELCDLE 477

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  +L    +  + +  Q S+ +    +  NG      
Sbjct: 478 TPVWVRVNPIQLEQVLINLLTNALQALEGQAERVVQIRLQTSEQQIALFVDDNGLGVGI- 536

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    + +    +  +   +       + H  +  L            +  L 
Sbjct: 537 ETLPHLFEPFHTTKKNGLGLGLSISQQILHSMQGTLSVATSPLGGARFTITLP 589


>gi|94970302|ref|YP_592350.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94552352|gb|ABF42276.1| multi-sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 631

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 69/228 (30%), Gaps = 17/228 (7%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIR 54
           + I   +  S  L A+  L S + H++ +PI AI   LE+L              M +I 
Sbjct: 382 RRIENEIELSRRLAAIGRLTSGVAHEVKNPINAIVVHLEILKNKLQEVAPDARRHMDIIE 441

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQVSWTG----- 106
                    ++ +               L  I     ++    A +K V + +       
Sbjct: 442 NEIRRLDRVVQTLVDFTRPVELKLFDADLRKIAEEVALLAGPEAANKNVHIEFNAVEKTL 501

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +    + +LN+ +    ++  GG + I+ + + +  +  +   G      E   +
Sbjct: 502 PVYVDTDLVKQAILNIVINGVQAMSDGGTLKITARSNDSAALLEISDQGPGI-PKEIQDK 560

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +      I       +   +   L  E            + 
Sbjct: 561 IFNLYFTTKKTGTGIGLAMTYRVMQLHNGALEFETEPGKGTTFRLQVP 608


>gi|15614365|ref|NP_242668.1| two-component sensor histidine kinase (stage II sporulation protein
           J) [Bacillus halodurans C-125]
 gi|10174420|dbj|BAB05521.1| two-component sensor histidine kinase (stage II sporulation protein
           J) [Bacillus halodurans C-125]
          Length = 600

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 66/227 (29%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           MAK +     S  L     + +   H+I +P+  IH  + L+     +       M L+ 
Sbjct: 373 MAKRMH---QSEKLALVGEMAAGAAHEIRNPLAVIHGFISLMKQTMPDSNENKSYMPLLL 429

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------QVSWTGEK 108
                    +  M L       +     + ++ + +   I                +   
Sbjct: 430 QEIDRINGIIDEMLLLAKPGAPILKRGDIKEMAEELIPLIRHSYGHDDLKIEMKLDSAVV 489

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
           +   ++  ++L NL   +  ++   G VT+  +  ++      ++  G           I
Sbjct: 490 MMDRKQMKQVLHNLIKNSIDAVGGTGTVTLYSKVDESGWYHLFIRDTGKGI-PSHLQETI 548

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    S      +    V  +   +   +      ++       L 
Sbjct: 549 FEPFSSSKESGTGLGLTIVQRIIENHHGSIRLVDSSENGTTFQISLP 595


>gi|157692812|ref|YP_001487274.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157681570|gb|ABV62714.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 593

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +        + E+ Q+I  
Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAGSEEEKKEIAQIIYD 410

Query: 56  SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103
            S+     +  +   A    G +   +   D E++ E        +              
Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQV 470

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                +    +  ++  NL   A    P GG+V  SVQ  ++     +K +G+     + 
Sbjct: 471 DEPHFVLDPDKMEQVFTNLIDNAIRHTPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +    +           +    V  +   ++  +            +  + +
Sbjct: 531 PFIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFTFYIPR 587


>gi|120611637|ref|YP_971315.1| histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120590101|gb|ABM33541.1| histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 298

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55
           A+       + ++ +   + + H+  +PI +I +   LL +        +  R       
Sbjct: 50  AQAEQLR-KATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPLNAEQSRQVAFIQA 108

Query: 56  -SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +   + +    + LA    G VD      ++  + +    + K V  +     +     
Sbjct: 109 TAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVDLFQALRGMFKPVATNPDLNLVFEEPR 168

Query: 115 R-----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       ++IL N    A    PRG     +     +   FS+   G        
Sbjct: 169 NLPPLFTDDRKLSQILRNFISNALKFTPRGEVRVSAQACDGDRVRFSVADTGIGIAPEFH 228

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   D +      +  +    +       LA      +  + +     V S  L 
Sbjct: 229 ASVFEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLP 284


>gi|49476767|ref|YP_034606.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49328323|gb|AAT58969.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 340

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 98  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 157

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    I       + +   
Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 217

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   +      G  + + + ++       +   G      + 
Sbjct: 218 STCPIIADHLSLMRIIGNLIKNSIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 277

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E I          + K
Sbjct: 278 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 334


>gi|51891554|ref|YP_074245.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51855243|dbj|BAD39401.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 458

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 65/230 (28%), Gaps = 26/230 (11%)

Query: 10  SSMDLVALLCSRI----------CHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSM 58
              +L A L + +           H++ +P+  I  +++ L+  G ++ E +  ++  + 
Sbjct: 219 QLQELYARLATAVDAQKRFVADASHELRTPLTIIRGNIDYLERAGTLDPEALADMKAEAA 278

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----------E 107
                L+ +             +    +  ++ D       +                  
Sbjct: 279 RMSELLEELLAMARADAGQTPELEPLALGPLVRDVCRRAGALPHQVDFVVELPPALDRIM 338

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
            +  +    + LL L   A    P G  VT+         +  +   G      +    F
Sbjct: 339 VLGHAEWLRRALLILLDNAFKYTPSGS-VTVRAGRQGEGVVLQVIDTGPGIPPEDLPRVF 397

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+   +     +       +A  +  RL  E         S  L 
Sbjct: 398 DRFFRGDPARSRGGSGLGLAIASWVAGLHGGRLTAESKVGEGSTFSLWLP 447


>gi|330900395|gb|EGH31814.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 351

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 112 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 171

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 172 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVHFYNLCNPEHWAV 231

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 232 GDSQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 290

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 291 PFFTTKDPGEGTGLGLALVYSIVEEHYGQITIDSPADPEQQRGTRIRVTLPR 342


>gi|325929297|ref|ZP_08190428.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325929316|ref|ZP_08190447.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540319|gb|EGD11930.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
 gi|325540338|gb|EGD11949.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas perforans
           91-118]
          Length = 648

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 252 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPYYKGLSVI 311

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                           L   E   E    V +   
Sbjct: 312 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQVLELHV 371

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ + ++      + S+  +G+     
Sbjct: 372 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVKIERDDGHLVVSVCDSGDGIAAE 431

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 432 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 490


>gi|308274523|emb|CBX31122.1| hypothetical protein N47_E46340 [uncultured Desulfobacterium sp.]
          Length = 494

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 62/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
           + K+    L +  +     L + + H I +P  ++   L  L+        + + + +I 
Sbjct: 253 LEKSREHLLQTEKMALVGQLAAGMAHSIRNPFTSVKMRLFSLERSQNLTETQHDDINVIS 312

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKI 109
                    ++               I    I  +    +    +     V+V       
Sbjct: 313 DEIRHMDTIVQNFLEFSRPPRLKMQKISPSHIVDLAMQLLEHRIKSYDVTVKVVREKSLS 372

Query: 110 DLSRERAKILLNLFMVAHASLPRGGK--------VTISVQDSKNENIFSLKINGNLARFP 161
           +++ +  ++   +  +   +     +                    +  +  +G      
Sbjct: 373 EINGDPEQLKEVIVNLIVNACEAMVRGGLITIYESEFFDPSIGKAAVLKISDDGPGI-PE 431

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++++    +  +   +       +  E+  R+  E  +         L 
Sbjct: 432 AIIGKVMEPFFTTKEEGTGLGLSIASRIIKEHSGRIDIESKEREGTTFKITLP 484


>gi|291279375|ref|YP_003496210.1| hypothetical protein DEFDS_0982 [Deferribacter desulfuricans SSM1]
 gi|290754077|dbj|BAI80454.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 499

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 78/234 (33%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53
           M +N+  ++  +  +  L + I H+I +P+ +I  + +LL        +   +  V  +I
Sbjct: 260 MHRNM-LHVDRLTTIGQLMASISHEIKNPLNSIMINTDLLMMYCEKMGDKNTKRLVEGII 318

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             +    +I  + +R +      V+              +++++ D   +   +Q +   
Sbjct: 319 SDAERIKMIIDQTLRFSKYTPNHVELINVEKFLNDIEAYVKRILFDREYIVFDIQKNGDW 378

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFP 161
               L   R ++      +   ++     V             +  IF    NG      
Sbjct: 379 SDCYLKMSRIQLEQVFVNLIKNAIDAVKDVDNPRVVLDVNCDMDHIIFRFIDNGIGM-SE 437

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    I +    +  D   +    V  +   N   ++ E  +    + +  L++
Sbjct: 438 EVKRNIFNEFYTTKKDGTGMGLSIVKEIIDANNGEIIVESKEGEGTIFTIKLDR 491


>gi|260774752|ref|ZP_05883655.1| osmolarity sensory histidine kinase EnvZ [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260609314|gb|EEX35466.1| osmolarity sensory histidine kinase EnvZ [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 436

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 66/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMD 279

Query: 66  FMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++     +   VD      DI      +    +                  + + NL +
Sbjct: 280 YLKPVNKESFIEVDLNEIANDIATSEGGYEIQIETELQQPLKVTNGSPIAIKRAVSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  V          ++ NG      +    F     G+     +   +
Sbjct: 340 NAIRYGNGWVKVSTGVTADNKLVWVCIEDNGPGIEQSQIGKLFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +A ++   ++        +       
Sbjct: 400 GLAIVKRIASQHNGNVIINNRSGGGLRAQISFP 432


>gi|239907953|ref|YP_002954694.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239797819|dbj|BAH76808.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 821

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 19/230 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            + +     +  LVA+  L + + H+I +P+G I    ELL +  ++ + +  + +    
Sbjct: 583 RRMLEQLRQTEKLVAVGKLAAGLAHEINNPLGVIACYAELLRQSLVDPQALDDLAVIERH 642

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDL 111
           A++  K +R    +     +  G  DI                +    +++         
Sbjct: 643 AVMAKKVLRDLLDFARPRPAKPGPCDIKALLSGLARIFEVQAQSRRSSLRLDVPEGIPLA 702

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLARFPEKFT 165
             +   +   L  +   +L         +       +   +   ++  NG      +   
Sbjct: 703 KADAGALEQVLSNLLLNALDAVEPGQGRITLAAAASEDGGQVNLTVADNGPGIPAVDLPH 762

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       L  +    +  +   D   V +  L 
Sbjct: 763 IFDPFFTTKEAGRGTGLGLAVAFGLMRDMGGTIEAQN--DGGAVFTLTLP 810


>gi|149180991|ref|ZP_01859492.1| sporulation kinase B [Bacillus sp. SG-1]
 gi|148851275|gb|EDL65424.1| sporulation kinase B [Bacillus sp. SG-1]
          Length = 406

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 58/224 (25%), Gaps = 13/224 (5%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII 62
               N   +     L + + H+I +P+  +   L+  +++  +  +  +   L       
Sbjct: 179 EQVQNAERLKTTGQLAAAVAHEIRNPLTVVKGFLQYYVEDNELNKQYKRNFSLMIDELDT 238

Query: 63  RLKFMRLAFGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +                          + ++ +           +QV         
Sbjct: 239 AEHVISQFLSIAKPEKESNLSRVEVQVVLDDVTELLKSYGLLHDNHIDLQVQEECYVFAN 298

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           S E  ++L+NL   A  + P G  V +  +  K+     ++  G      E    +    
Sbjct: 299 SIEFKQLLINLIKNAIEASPHGSTVLVKAEKKKDRVEIIVEDKGQGMSKEEISL-LGTPF 357

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +       +  +    +           ++    +
Sbjct: 358 YSLKSRGTGLGLMICYNIVEKYNGTIQFTSQLGVGTTVTLRFPR 401


>gi|116748835|ref|YP_845522.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697899|gb|ABK17087.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 721

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 66/248 (26%), Gaps = 36/248 (14%)

Query: 2   AKNICFNL-----SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVM 50
           A+     +      +  + AL  L   I HD  + +G I    E+     +E     E +
Sbjct: 330 AEEEQIRVEARLRQAQKMEALGTLAGGIAHDFNNILGIIIGYSEMAHWNAEEGSPIREDL 389

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q +  ++  A   ++ +             + +G I +     +       +    +   
Sbjct: 390 QHVFKATTRARELVRQILAFSRRGEQEKKPVQIGLIVKEAMLMLRASLPSTIDMKMDIAS 449

Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENI 148
                    +  ++L+NL   A  ++   G V                  S         
Sbjct: 450 KSVVLADPTQVHQVLMNLCANAAHAMRENGGVLQVSLTDVSIGPDSVHVPSDLRPGPHVQ 509

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
            ++   G          +I D    +        +    V  +   +   +  + I    
Sbjct: 510 LTVMDTGPGILPSAL-DRIFDPFFTTKELGVGTGLGLSVVHGIVRSHGGTVSADSIPGEG 568

Query: 207 VVLSALLE 214
                LL 
Sbjct: 569 AAFRVLLP 576


>gi|255014923|ref|ZP_05287049.1| putative two-component regulator sensor kinase [Bacteroides sp.
           2_1_7]
          Length = 761

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49
           A+        M    L  + + H+I +P+ AI     L++   + +              
Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++LI      + +    M   F        +  +    Q++       +       
Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++L N    A         +V        +     ++  G      EK 
Sbjct: 646 VVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q+ D     +       +      ++A      +  +            L K
Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFMLTLPK 757


>gi|228951141|ref|ZP_04113257.1| hypothetical protein bthur0006_5680 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808551|gb|EEM55054.1| hypothetical protein bthur0006_5680 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 463

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 14/219 (6%), Positives = 57/219 (26%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++  +     E                +          
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIASKESTPSEQRMRYLSIIKDESDYITNLVQDLFSLA 295

Query: 68  RLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEK----IDLSRERAKILL 120
           ++           + L           + +  ++ ++VS++           +   ++++
Sbjct: 296 QMEQHNFSIQVKEVHLHTFLTRIAEKVNAMYKERCIKVSFSCPPTLLVNLDEQRFEQVIV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + IS+ +       +++  G      +                 +
Sbjct: 356 NILNNAYRHSKEHSHINISITEEHKRISITIEDEGEGIPPEDLPHIFDRFYRVDKARTRS 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      D+       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHDGNITVTSEVDYGSCFIISLP 454


>gi|258404216|ref|YP_003196958.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257796443|gb|ACV67380.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 475

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 16/224 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSA 60
               L +  L ++  + + I H+I +P+G I +S E+L +  + D     +L+      +
Sbjct: 252 ERELLQNEKLASMGRMVASIAHEIRNPLGIIRSSSEMLYKKALRDNSQNARLLHAVFQES 311

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKID 110
               + +     Y       +   D  Q+                +     +  T     
Sbjct: 312 KRLSQTVHEFLDYARPKQPAMREVDCSQILQRALAFLEQECAAHEIQVTTALPETLPSQG 371

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +   N+   A  S+  GG++ IS    +++    ++  G          + ++ 
Sbjct: 372 DDDLLYRAFYNIISNALQSMDGGGELDISGGREEDQIWICIRDTGPGFDATML-DKYLEP 430

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +   +   L     +     +   L+
Sbjct: 431 FYTTKDQGTGLGLAIVKNIVDSHGGSLNITNTET-GAEVCIRLQ 473


>gi|171320726|ref|ZP_02909738.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
 gi|171094020|gb|EDT39120.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MEX-5]
          Length = 1022

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 64/245 (26%), Gaps = 33/245 (13%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           +   +   + + D       + L +   H+I +P+  I  +LELL+   ++      ++ 
Sbjct: 484 LVHQLEEAVRAADSANAAKSSFLAAT-SHEIRTPLNVILGNLELLERTALDASQQSRVQT 542

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              SA   L  +     ++      + +  IE  +   I  +                  
Sbjct: 543 LRASAEGLLAIVSDILDFSKIEAGAMSVESIEFDVIAVIERELAAFAPVARAKGLPLFAD 602

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKING 155
           +  S            A+++ NL   A      G  V             E    ++  G
Sbjct: 603 IDASAAQRMRGDPTRLAQVVGNLLGNAIKFTGEGRIVARVAVGHDVRGKPEIAIGIEDTG 662

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 ++  ++          +        +       L       +          + 
Sbjct: 663 IGIDPAQQN-RLFKPFSQVDASITRRYGGTGLGLALCDRLVAAMGGTISVHSAPGVGSLF 721

Query: 210 SALLE 214
           +  L 
Sbjct: 722 TVRLP 726


>gi|150008085|ref|YP_001302828.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298376562|ref|ZP_06986517.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
 gi|149936509|gb|ABR43206.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|298266440|gb|EFI08098.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
          Length = 761

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 58/233 (24%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49
           A+        M    L  + + H+I +P+ AI     L++   + +              
Sbjct: 528 AREKAEESDRMKSAFL--ANMSHEIRTPLNAIVGFSNLMNSEEVLEPEEREQFVKLINTN 585

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++LI      + +    M   F        +  +    Q++       +       
Sbjct: 586 SDLLLKLINDILDLSRMESGKMSFVFDRHDLNVLINEIYCTFQLMMPEGVELRMRVPEIP 645

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++L N    A         +V        +     ++  G      EK 
Sbjct: 646 VVVAVDPYRLKQVLSNFINNAIKFTTSGYIEVGYYFCTKGDCLHIYVEDTGIGI-PEEKQ 704

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q+ D     +       +      ++A      +  +            L K
Sbjct: 705 KQVFDRFCKLDEFAQGTGLGLAICQVIAQRFGGEIQLKSEYGKGSRFMLTLPK 757


>gi|320451219|ref|YP_004203315.1| sensor histidine kinase [Thermus scotoductus SA-01]
 gi|320151388|gb|ADW22766.1| sensor histidine kinase [Thermus scotoductus SA-01]
          Length = 468

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 56/206 (27%), Gaps = 17/206 (8%)

Query: 23  CHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLK---------FMRLAFG 72
            H++ +PI AI   +  LL    + +   + + +    A    K                
Sbjct: 255 SHELRTPITAILGHVGFLLRRTPLTEAQRESLEVVKREAERMGKLVSDLLELSQTGSWRM 314

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
               V     L ++++        +  V+ S             ++L NL   A  +  R
Sbjct: 315 EPAPVRIQDLLEEVKEEFAKSFEGEIEVEASPELWVQGDPDRLHQVLANLLSNAIKAGAR 374

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SHDIQFYYVI 187
              +         + +  ++ +G        P  F +    +     +     +    V 
Sbjct: 375 HIWLRAFDL--GEKVVVRVEDDGEGIPKEHLPHLFERFYRVDKARDRERGGSGLGLAIVK 432

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALL 213
            +   +   +  E         S  L
Sbjct: 433 AILEAHGGEIWVESEVGKGTAFSFSL 458


>gi|289668325|ref|ZP_06489400.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 674

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 278 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGQPNYKGLSVI 337

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                           L   E   E    + +   
Sbjct: 338 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHV 397

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ +S++      + S+  +G+     
Sbjct: 398 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVSDSGDGIAAE 457

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 458 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 516


>gi|152971177|ref|YP_001336286.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|262043281|ref|ZP_06016412.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330000607|ref|ZP_08303750.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
 gi|150956026|gb|ABR78056.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|259039380|gb|EEW40520.1| sensor kinase RcsC [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328537949|gb|EGF64128.1| sensor kinase protein RcsC [Klebsiella sp. MS 92-3]
          Length = 946

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +     +         +++ NL   A       G + + VQ + +    S++  G     
Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCAGDYLQISVRDTGEGIPA 628

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  E         +  + 
Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687


>gi|118477337|ref|YP_894488.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118416562|gb|ABK84981.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 375

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL      +    E  V 
Sbjct: 133 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGSQFHTNREECEQYVS 192

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++ ++E  +           +   +
Sbjct: 193 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCI 252

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I +          +K  G     
Sbjct: 253 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQCIPN 312

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              P  F +   G            +       +A  +K  +     +    V +  L +
Sbjct: 313 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIALPR 371


>gi|117926945|ref|YP_867562.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Magnetococcus sp. MC-1]
 gi|117610701|gb|ABK46156.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Magnetococcus sp. MC-1]
          Length = 355

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 67/229 (29%), Gaps = 22/229 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           + +   L S+  +AL    + H++ +P+  I  + +LL+            +LIR     
Sbjct: 127 RRLNETLDSLGSLAL---AVAHEVKNPLAGIRGAAQLLEMESTSETGAICTELIRSEVDR 183

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRER 115
               L  +             I + ++   +    +      V               + 
Sbjct: 184 ISRLLDSLLGLAEDHPINQKNINIHEVLDHVVRLCSSSGAHLVRDYDPSLPEISGDRDKL 243

Query: 116 AKILLNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            ++ LNL   A  +               ++ ++    +   +  ++ NG      E   
Sbjct: 244 IQLFLNLISNATEATGKEGEVRISSRISKQIRLTQGRRQQHIVVEIRDNGPGI-PHELRK 302

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I    V +  +   +       + H++  ++  E            L 
Sbjct: 303 RIFLPFVTTKSNGTGLGLAISQKIVHDHDGQMALESRPGE-TAFRVFLP 350


>gi|296271226|ref|YP_003653858.1| histidine kinase [Thermobispora bispora DSM 43833]
 gi|296094013|gb|ADG89965.1| histidine kinase [Thermobispora bispora DSM 43833]
          Length = 487

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 57/215 (26%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQLIRLSSMSAIIRLK 65
             +   H++ +P+ +I    E            L+  +  E   M L+    +      +
Sbjct: 253 FVADASHELRTPLTSIRGFAEFYRRVPGSDPDRLMARIESEATRMSLLVEDLLLLARLDQ 312

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L+      +          + +     V   V+       +   +   +++ NL   
Sbjct: 313 QRPLSKRPVDMLAIAADAVGDAKTLCPDRDVSLEVEAEEALIVMGDEQRLRQVVGNLMNN 372

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES---TIDSH 179
           A    P+G  +T+ V  +     F ++  G      +    F +    +           
Sbjct: 373 AVTHTPQGTPITVRVGTAGGAVYFEVEDAGPGLTPEQAARVFERFYRADPSRARDNQGGS 432

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  L   +   +               + 
Sbjct: 433 GLGLAIVESLVKAHGGTVSVRSEPGKGAAFRFTIP 467


>gi|157363248|ref|YP_001470015.1| multi-sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
 gi|157313852|gb|ABV32951.1| multi-sensor signal transduction histidine kinase [Thermotoga
           lettingae TMO]
          Length = 863

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 69/225 (30%), Gaps = 17/225 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
                    L  L  + +R+ H++ +PI  I   L  L     +    +  + ++     
Sbjct: 635 EQERKDKEKLALLGEMSARVAHELRNPITVIGGFLNRLKKNISDPQARERYLNILSNEVD 694

Query: 59  SAIIRLKFMRLAFGYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWT----GEKID 110
           +    +  +        ++D        L +         A   ++ + +      E + 
Sbjct: 695 NLQNIVSEILEFSRSARNIDESKFQINELIEEVAFFMQEKAARNKINLEFMLSPLQEVVA 754

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++L+NL   A  + P+GG++ +  Q  ++  + S+   G      E   +I   
Sbjct: 755 DRNRIKRVLINLVQNAIEATPQGGRIILKSQQDQDRVLVSVFNTGEPI-SEENLRKIFVP 813

Query: 171 NVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +   E+  R+  E            + 
Sbjct: 814 FYTTKTYGTGLGLPICKKIIEDEHGGRIWAESKP-EGTEFKFEIP 857


>gi|150378210|ref|YP_001314805.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
 gi|150032757|gb|ABR64872.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
           medicae WSM419]
          Length = 534

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIR---- 54
           ++    L+ ++ +  + S + H++  P+ AI N       LL ++               
Sbjct: 293 QDELARLARLNEMGEMASTLAHELNQPLSAIANYSHGCTRLLRDMDDAVATRMREALEEV 352

Query: 55  -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWT 105
                 +        +F+          D    +G+   +      +         +   
Sbjct: 353 ASQSLRAGQIIKHLREFVTNGETEKAPEDIRKLVGESAALALVGSREQGVRTVFEYLPDA 412

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
              +    +  ++L+NL   A  ++    +      ++     E    ++ +G      E
Sbjct: 413 EMVMVDRIQVQQVLINLMRNAIEAMRHVDRRELTIRTMPADPGEIAVVVEDSGGGI-PEE 471

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              Q+    V +      I       +   +   +               L 
Sbjct: 472 VAGQLFKPFVTTKASGMGIGLSISKRIVEAHGGEMTVSKNAAGGATFRFTLP 523


>gi|126660147|ref|ZP_01731266.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618590|gb|EAZ89340.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 946

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 59/216 (27%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
           S + H++ SP+  I    +LL    +E++ ++         +     +            
Sbjct: 582 SILSHELRSPLNPILGWTQLLQTKKLEEQQVEEALAVIERNVKLQTQLIDDLLDMAKILR 641

Query: 71  ---FGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKILLNLFM 124
                    VD    +    +V+           +V +S             +I+ NL  
Sbjct: 642 GKITLNMTPVDLSSTIKAAIEVVRMAAERKNISLKVNLSNNCYIKGDQGRIQQIIWNLLS 701

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
            A    P GGKV I+++    +   ++   G                             
Sbjct: 702 NAIKFTPEGGKVMINLEQVNQQVQITVTDTGKGIDPEFLPHIFESFRQEDVSITRHYGGL 761

Query: 180 DIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
            +    V  L   +   ++ +   +D        L 
Sbjct: 762 GLGLSIVKYLVDAHGGTIVADSLGEDKGATFLITLP 797


>gi|83648722|ref|YP_437157.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83636765|gb|ABC32732.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 493

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 12/221 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + I   +   +    L S I HD+ +PI  +    E+LD+     + +Q +       
Sbjct: 274 MQERIQRYIQDRE---TLFSAISHDLKTPITRLRLRAEMLDDDAQRGKFIQDLEDLDHMV 330

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L+ ++    +   V+    L  + Q I +   + ++        +     +   +  
Sbjct: 331 HGALQCVKDTTVHENPVNI--DLHYLLQQICEGADLQRKKVTLSGLLEQPFWGKPLALKR 388

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
               +   +L  G +  + ++D +     +++  G      E   +I +           
Sbjct: 389 AFSNIIDNALFYGHQAEVFLEDVQEGVHVAVRDFGPGVPEME-QDRIFEPYVRLEKSRNR 447

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +       + H +  RL     +    V+   L +
Sbjct: 448 NTGGSGLGLSIARNIIHAHGGRLKVRNHEQGGFVVEVWLPR 488


>gi|89093821|ref|ZP_01166767.1| C4-dicarboxylate transport sensor protein, putative
           [Oceanospirillum sp. MED92]
 gi|89081951|gb|EAR61177.1| C4-dicarboxylate transport sensor protein, putative
           [Oceanospirillum sp. MED92]
          Length = 742

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 67/232 (28%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
                + +  L  L  + + I H++  P+ AI           E+      E+ ++++ +
Sbjct: 499 TQNELIQTAKLAVLGQMSAGINHELNQPLTAIRTYADNAKAFMEIGKSETAENNLLEISK 558

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------E 107
           L+   A I       +   +G+ +S+      +  +        +V              
Sbjct: 559 LTERMAKIIHPLKEFSRKTSGTPESVCLKNVRDGAMSIMYGRLSKVHADVNWPDSLENVY 618

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFT 165
            +  +    ++L+NL   A  ++       + V     K      ++  G+     +   
Sbjct: 619 VMGDTVRLEQVLVNLISNALQAMEGHPAPAVDVTLEQGKTLICLQVRDYGSGIPEEDLG- 677

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++ +    +        +       +       L      D        L +
Sbjct: 678 RVFEPFYTTKKAGQGLGLGLSISHRIIESMGGALSVLNHPDGGAQFRICLPR 729


>gi|326423961|ref|NP_761037.2| sensor histidine kinase [Vibrio vulnificus CMCP6]
 gi|319999339|gb|AAO10564.2| Sensor histidine kinase [Vibrio vulnificus CMCP6]
          Length = 805

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 58/243 (23%), Gaps = 34/243 (13%)

Query: 4   NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                L +  + A           + + H+I +P+  +  + ++L +  + +E  + ++ 
Sbjct: 334 EKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLNEEQRKHLKT 393

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------- 105
              S    +  +     Y+      +   +     +  I     V  +            
Sbjct: 394 LYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVY 453

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGN 156
                            ++L NL   A     R           ++  N     +K  G 
Sbjct: 454 TTVPTGRWYCADKARLRQVLFNLLNNAVKFTARGLVEVYFEEHTREQANYLSIKVKDTGI 513

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                    +I                   +    V  +A +    +            +
Sbjct: 514 GIPES-AQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFT 572

Query: 211 ALL 213
             L
Sbjct: 573 VEL 575


>gi|262280535|ref|ZP_06058319.1| two-component sensor [Acinetobacter calcoaceticus RUH2202]
 gi|262258313|gb|EEY77047.1| two-component sensor [Acinetobacter calcoaceticus RUH2202]
          Length = 452

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 57/215 (26%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78
            I H++ +P+  +   +E   D+  I     +               +      +   + 
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L  +  ++     + +  K
Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTVVFPK 445


>gi|296121745|ref|YP_003629523.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296014085|gb|ADG67324.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 584

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 62/226 (27%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +L     S + H++ +P+ +I    E L     ++       +Q I   +      +  
Sbjct: 349 ENLRREFVSNVSHELKTPLTSISAYAETLLNGAMEDEETCRTFLQRIEEQAERLNKLIAD 408

Query: 67  MRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +                           + + + V +        V  +   E I  S  
Sbjct: 409 LIALARLDSIEQAFELEPVNATYILQKSIDEHQGVAKSKQIELISVAPNDEMEVIADSDG 468

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A    P GG+VT+  +     +   ++  G      E   +I +     
Sbjct: 469 FQTIIDNLLDNALNYTPAGGQVTVRWRRDGEWSRIDVEDTGVGI-PREHQARIFERFYRV 527

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +    V  L       +            + LL+
Sbjct: 528 DKARSREVGGTGLGLSIVKHLCQVFGGSIRVTSQVGSGSQFTVLLK 573


>gi|229159730|ref|ZP_04287739.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803]
 gi|228623755|gb|EEK80572.1| hypothetical protein bcere0009_5330 [Bacillus cereus R309803]
          Length = 461

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 56/219 (25%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQL-------IRLSSMSAIIRLKFM 67
           +   + + H++ +P+  +    ++ L E    ++ ++            +          
Sbjct: 236 SEFLASVAHELRTPLTYVRGYADIALKESTPPEQRLRYLSIIKDESDYITNLVQDLFLLA 295

Query: 68  RLAFGYTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           ++       V + + L             +     V   +    +       +   ++++
Sbjct: 296 QMEKHSFSIVVTEVQLHSFLTRITEKVNAMYKERHVKVSLTCPSSLLVKLDEQRFEQVIV 355

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
           N+   A+        + ISV +       ++K  G      +                  
Sbjct: 356 NILSNAYRHSKEHSHINISVTEETKRISITIKDEGEGIPPEDLSHIFDRFYRVDKARSRA 415

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +      +H       L 
Sbjct: 416 TGGTGLGLSIVKEIVELHGGNITVSSEVNHGSCFIISLP 454


>gi|218779630|ref|YP_002430948.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218761014|gb|ACL03480.1| Histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 417

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 79/226 (34%), Gaps = 17/226 (7%)

Query: 3   KNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
           +++  ++     + A+  + +R+ H+I +P+ A+  S+ LL +        D++M++I  
Sbjct: 181 RSVRQHMQRVEKMAAVGEMAARLTHEIKNPLAALVGSVRLLHDDLVLEPANDKLMRIILR 240

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGE 107
            +      +              + I L +    I +    D+         VQ+  +  
Sbjct: 241 EADRLGDLVNEFLQFARPVAKNPTPICLANHLNEIVELFRRDRMAADRLTIHVQLDPSHW 300

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166
               +    +++ N  + +  ++   G VTI  +   N      +K +G+        + 
Sbjct: 301 IAMDASHLRQVIWNFLLNSAQAIESEGHVTIITEAVDNETIAIRVKDDGSGIDENTIKS- 359

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           + +    +      +    V  +       L  E + +     S +
Sbjct: 360 LFEPFFTTKSQGSGLGLCVVYRILEAYGFLLDVESVPEKGSTFSVM 405


>gi|83309719|ref|YP_419983.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944560|dbj|BAE49424.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 796

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 2   AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            +N+      S  + A+  L   + HD  + + A+    +LL +           +  ++
Sbjct: 407 QRNLEMQFAQSQKMQAMGQLAGGVAHDFNNLLTAMIGFCDLLLQRHGAGDPSFADIMQVK 466

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108
            ++  A   ++ +            L+ + D    + + +       +            
Sbjct: 467 QNANRAASLVRQLLAFSRRQALQPRLLNVTDALAELSNLLRRLLGETIELRMIHGRALGL 526

Query: 109 -IDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152
                 +  ++++NL + A  ++P               +  +    +  + +     + 
Sbjct: 527 VRVDPGQFDQVIINLAVNARDAMPGGGALTIRTNAVHVDQPIQRGPELMPAGDYVQIEVA 586

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      E   +I +    +        +    V  +  +    +  E         S
Sbjct: 587 DTGTGI-GKENLARIFEPFFSTKEVGAGTGLGLSTVYGIVRQTDGFIFVESEPGQGATFS 645

Query: 211 ALLEK 215
             L +
Sbjct: 646 IYLPR 650


>gi|37680448|ref|NP_935057.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37199196|dbj|BAC95028.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 805

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 58/243 (23%), Gaps = 34/243 (13%)

Query: 4   NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                L +  + A           + + H+I +P+  +  + ++L +  + +E  + ++ 
Sbjct: 334 EKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLNEEQRKHLKT 393

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------- 105
              S    +  +     Y+      +   +     +  I     V  +            
Sbjct: 394 LYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVY 453

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGN 156
                            ++L NL   A     R           ++  N     +K  G 
Sbjct: 454 STVPTGRWYCADKARLRQVLFNLLNNAVKFTARGLVEVYFEEHTREQANYLSIKVKDTGI 513

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                    +I                   +    V  +A +    +            +
Sbjct: 514 GIPES-AQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFT 572

Query: 211 ALL 213
             L
Sbjct: 573 VEL 575


>gi|150019402|ref|YP_001311656.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149905867|gb|ABR36700.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 411

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + K+    L   +    L + I HD+ +PI +I+  +E L +         +  + +I  
Sbjct: 172 LKKSEEMKLEYEENRKALIANISHDLKTPITSINGYIEALVDGVVTSPDKVNNYLNIIHN 231

Query: 56  SSMSAIIRLKFMRLAFG-YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
           ++      +  + L        +D   G+   +  + D +     V      E     R 
Sbjct: 232 NTTYINNLIDDLFLFSKLDMQKLDFNFGIVKFKAFMSDLMEEFDFVLKEKDIEFKFEDRL 291

Query: 114 -----------ERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
                         +++ N+   A     +   +      ++       +K NG      
Sbjct: 292 SEELEINIDGKRIYQVIRNVIGNAIKYGRQKDSIIKVELSNNNEWIKIEIKDNGPGIPED 351

Query: 162 ---EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F +    + E T D  S  +       +   +  ++    I       +  L 
Sbjct: 352 KLSNIFNRFYRIDTERTKDFMSTGLGLAIAKEMVEAHGGKIYASSIMGKGSTFTIELP 409


>gi|323488493|ref|ZP_08093737.1| integral membrane sensor signal transduction histidine kinase
           [Planococcus donghaensis MPA1U2]
 gi|323397710|gb|EGA90512.1| integral membrane sensor signal transduction histidine kinase
           [Planococcus donghaensis MPA1U2]
          Length = 453

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 63/220 (28%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRL--- 69
           L +   H++ +P+  I +S+E+L+    E +      +  ++       + +  +     
Sbjct: 231 LVANASHELRTPLSTILSSIEVLEMEREEKDPFTGRILDGLKHEVRRMTVLVSDLLTLAQ 290

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                       +     +   L    +       +D  +             +  ++L 
Sbjct: 291 ADSPGANALVCNWCNLTLASEQLLSSFKARATAKKIDLTLDAPAEVNVYADCDKLVQLLS 350

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
            L   A      GG VT+++Q   +  + +++  G      +   +I D           
Sbjct: 351 ILLDNAINYTLEGGSVTVTLQIRNDSLLLAVRDTGIGIAAAD-QDRIFDRFYRADKARTR 409

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               H +       +   +   +  E       +    + 
Sbjct: 410 KEGGHGLGLAIGKWIVDAHGGTIWVESSAGEGSLFQVRIP 449


>gi|167629693|ref|YP_001680192.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592433|gb|ABZ84181.1| sensor histidine kinase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 940

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 55/236 (23%), Gaps = 28/236 (11%)

Query: 6   CFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
                   L  +   + + H+I +P+  I    ELL    +  E +   +    SA + L
Sbjct: 537 KVRAEEASLAKSSFLAMMSHEIRTPMNGIIGMNELLLGTRLTSEQLDYAQAVQESAELLL 596

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWTGEK 108
             +     Y+      + L  I+      +                 +   +        
Sbjct: 597 TVINDILDYSKVEAGKMELESIDFDPVPVVDGVARLLQGKAREKGLTISTFIADEARFLF 656

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164
                   ++LLNL   A     RG         S         F +   G     PE  
Sbjct: 657 QGDPGRLRQVLLNLVSNAVKFTERGTIDIRVFPVSDTGSQVTIRFEVIDTGIGI-APEIR 715

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +          +        +       L      ++  +            L 
Sbjct: 716 DCLFQPFSQGNTSMTRKYGGTGLGLAISRNLVELMGGKIGVQSKPGEGSTFWFTLP 771


>gi|75907783|ref|YP_322079.1| response regulator receiver signal transduction histidine kinase
           [Anabaena variabilis ATCC 29413]
 gi|75701508|gb|ABA21184.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Anabaena variabilis ATCC 29413]
          Length = 443

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 64/230 (27%), Gaps = 23/230 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLK 65
           L +  L +   + + H++ +P+ AI    ++L       +  +   ++     +    L 
Sbjct: 168 LEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGNLTGQQADMVERILNNGKHLLM 227

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TGEKID 110
            +     ++   +  + L      +   I        S                    ++
Sbjct: 228 LLNEVLDFSKLEEGRLELKPELFDLTKVINAAVAEMRSLAEAKKLSLLVQIDLQNPLLVN 287

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-----KFT 165
                 +IL+NL   A      G           +     +K  G      +     +  
Sbjct: 288 DPVRIKQILINLLSNAIKFTDSGSIWIDVKDLPGSWVEIRVKDTGIGIASKDFKYIFEAF 347

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + VD ++        +    +  L      +++ E       + +  L +
Sbjct: 348 RQVDQSITRKYAGTGLGLAIIDSLVQMMSGKIILESQLGVGSIFTITLPR 397


>gi|194337020|ref|YP_002018814.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309497|gb|ACF44197.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 650

 Score =  114 bits (285), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 71/236 (30%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +        ++ +  L   + HD+ + +  I    E+L+     +   Q    +      
Sbjct: 275 ETQLQQAQKLESIGRLAGGVAHDLNNLLTPILGYAEMLEMELAGNAGQQEEVRAIQRAST 334

Query: 60  -----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDL 111
                    L F R      G V+    L +  +++   +    RV+             
Sbjct: 335 SARKLIWQLLAFSRTQTLELGEVELNAMLKEFGEMLRQSVGSGVRVEFELAPSLLPLHAN 394

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-----------SKNENIFSLKINGNLARF 160
           + +  ++L+NL + A  ++P GG++                      +  +   G     
Sbjct: 395 AGQLEQVLVNLALNARDAMPSGGRLCFRTSFEKLSEERDGLPPGRYAVLEVADTGCGI-R 453

Query: 161 PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   +I +    +        +    V  +  +++  ++    +        LL 
Sbjct: 454 PEDMPRIFEPFFTTKGPGKGTGLGLSTVYGIVRQHRGNIVVSCPEGDGCSFRVLLP 509


>gi|327539788|gb|EGF26391.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1739

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 62/234 (26%), Gaps = 24/234 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + ++      +    +   + + H+I +P+ AI    ELL ++  + E +  ++    + 
Sbjct: 1349 LRESERRANEASASKSAFLANMSHEIRTPMTAILGYAELLQDIIQDTEGLHHLQTIRRNG 1408

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
               L  +      +      + +          I   + +                    
Sbjct: 1409 DYLLDIINDILDLSKIEAGKLDVESERFDPAHLIEDVRSIMEVRAKEAGLELTVEYGQQI 1468

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163
                   ++   ++L+NL   A    P G    +   DS        +   G      E+
Sbjct: 1469 PASIQSDAKRLKQVLINLVGNAIKFTPEGNVRLVVRMDSDPIRLCIDVIDTGIGITL-EQ 1527

Query: 164  FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              Q+          V  T     +       LA      +  +         + 
Sbjct: 1528 QEQLFLPFSQGDSSVNRTFGGTGLGLTISRRLAEMLGGTIHFQSEVGVGSTFTL 1581


>gi|237713394|ref|ZP_04543875.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262406767|ref|ZP_06083316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646034|ref|ZP_06723699.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810538|ref|ZP_06769191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446633|gb|EEO52424.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262355470|gb|EEZ04561.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638605|gb|EFF56958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442302|gb|EFG11116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 512

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     LL   DE  +    M L++ ++
Sbjct: 278 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 337

Query: 58  MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +   + ++    G +D ++       L             D  V++ +      
Sbjct: 338 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDSAVELRFDENSPQ 397

Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  +       ++L N    A     +G      + + +++  F +   G      +K  
Sbjct: 398 IVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLEDESQVRFCVTDTGKGIPDEQKHE 457

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +S +    +       L      ++  E  +         
Sbjct: 458 IFNRFVKLDSFVQGAGLGLSICQSLVKRMGGKIGVESREGEGSCFWFT 505


>gi|225863841|ref|YP_002749219.1| sensory box histidine kinase [Bacillus cereus 03BB102]
 gi|225787888|gb|ACO28105.1| sensory box histidine kinase [Bacillus cereus 03BB102]
          Length = 355

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL      +    E  V 
Sbjct: 113 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGSQFHTNREECEQYVS 172

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++ ++E  +           +   +
Sbjct: 173 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCI 232

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I +          +K  G     
Sbjct: 233 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQCIPN 292

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              P  F +   G            +       +A  +K  +     +    V +  L +
Sbjct: 293 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIALPR 351


>gi|158340378|ref|YP_001521734.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
 gi|158310619|gb|ABW32233.1| two-component sensor histidine kinase, putative [Acaryochloris
           marina MBIC11017]
          Length = 489

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 12/202 (5%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
           H++ +PI  I   LEL+ D+   + E ++L+          +  M               
Sbjct: 280 HELRTPITVIRGHLELIGDDPQEQQETIELVLDELDRMGRLVNDMVALAKSEHPDFLQYE 339

Query: 83  LGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           + D++Q I D           + ++ +  +G  +   +     LLNL   A    P  G 
Sbjct: 340 MIDLKQFIYDLHTKAQAIAKHNWQLTLKCSGSMMGDRQRLTGALLNLLRNAAQHTPSTGT 399

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---ESTIDSHDIQFYYVILLAHE 192
           + +  + +  + +F +K  G      E   +I D      +   +   +    V      
Sbjct: 400 IELGCKQTLTQVVFWVKDTGKGIAL-EDQQRIFDRFARLGQRQSEGSGLGLAIVQAFTKA 458

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           +  ++               L 
Sbjct: 459 HGGKIELMSQLGVGSTFRITLP 480


>gi|78224348|ref|YP_386095.1| histidine kinase [Geobacter metallireducens GS-15]
 gi|78195603|gb|ABB33370.1| histidine kinase [Geobacter metallireducens GS-15]
          Length = 484

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 63/218 (28%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRL 69
             L S I H+I +P+  I  +++ L            + V+ +              +  
Sbjct: 251 GQLASGIAHEIRNPLNYISLAIDHLKSEFTAACPDKTERVVPVADKIKEEVRRANYMVVN 310

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLN 121
              +   +   I      ++IE  +             V+ +   +   +  +   +   
Sbjct: 311 FMNFGRPLKLRITEISYRELIEKALPLLEEKLAEQRVTVRTAIPTDLPAMRVDGEMLRNC 370

Query: 122 LFM---VAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           LF     A  ++P GG VT   +    +N  + +    G   R  +   ++      +  
Sbjct: 371 LFNFVTNAAQAMPDGGTVTLGATFDREQNRFLLTFSDEGCGIREEDL-AKVFQPWYTTRE 429

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +  E+   +            + LL 
Sbjct: 430 AGIGLGLAITERIVREHGGEIRVASSAGKGTTFTVLLP 467


>gi|29346674|ref|NP_810177.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568722|ref|ZP_04846133.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|29338571|gb|AAO76371.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251842795|gb|EES70875.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 1039

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN     + +    L  + + H+I +P+ AI     +L     E+E  + + +   +  
Sbjct: 668 AKNRAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNNT 725

Query: 62  ----------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TG 106
                        K          S   +  L    + +         V++ +       
Sbjct: 726 LLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKSDAVKLEFVAPEEPC 785

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++++NL   A     +G       + +     F +   G      ++ + 
Sbjct: 786 FAHIEKNRLSQLIINLVTNAIKFTIQGSIRFGYKRQNNE-LYFYVADTGCGIPQDKQKSI 844

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S      +       L      ++  E  + +       L 
Sbjct: 845 FGRFVKLNSFAQGTGLGLSICQTLVEHMGGKIGVESEEGNGSTFWFTLP 893


>gi|329851625|ref|ZP_08266382.1| sensor protein fixL [Asticcacaulis biprosthecum C19]
 gi|328840471|gb|EGF90043.1| sensor protein fixL [Asticcacaulis biprosthecum C19]
          Length = 498

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 62/243 (25%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSM--DLVAL--------LCSRICHDIISPIGAIHNSLE----LLDE----- 42
            ++    L  +  +L  L        + S + H++  P+ AI N ++    LL +     
Sbjct: 249 RQDTTAQLEQLHGELARLSRLNELGEMASTLAHELNQPLSAIANYVQGSVRLLKDVETEP 308

Query: 43  --------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
                        + ++  ++                  +                ++  
Sbjct: 309 ASTVRFALEETAKQALRAGKIIHHLRQSATHGTTEMRPDSLRSIIEEAAALALAGSKEKG 368

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSL 151
                   +   + +    +  ++L+NL   A  ++    +  +++       +     +
Sbjct: 369 IKTVFGYQAIADQVLIDRVQIQQVLINLIRNAGEAMRTSERRELTLTTLDASPDMVAVEV 428

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              G      +   Q+    V S      I       +   +   +      D       
Sbjct: 429 ADTGPGI-AEDVAAQLFQPFVTSKPGGMGIGLAISKRIIEAHDGTIEVRRNSDGGATFRF 487

Query: 212 LLE 214
            L 
Sbjct: 488 TLP 490


>gi|307265843|ref|ZP_07547393.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919118|gb|EFN49342.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 461

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 70/219 (31%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   + S I H++ +P+  +H+ +E + +       E ++ +    +  I  +K +    
Sbjct: 242 LRKQMTSDIAHELRTPLTTLHSHIEAMLDGVWEPTHERLKSLNEEVLRLINIVKDLETLN 301

Query: 72  GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +   +           + +  +    +        +    +             A++ +
Sbjct: 302 KFESDMLKLNKIKFDVSELVKNILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 361

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I+     +  +F ++ NG      +    F +   G       
Sbjct: 362 NLISNSNKYTPVGGKIKIAFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 421

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I      ++   +  ++  E   +     +  + 
Sbjct: 422 TGGSGIGLSIAKVIVLAHGGKINVESEINKGSKFTVKIP 460


>gi|298387248|ref|ZP_06996801.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298259917|gb|EFI02788.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 1039

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN     + +    L  + + H+I +P+ AI     +L     E+E  + + +   +  
Sbjct: 668 AKNRAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNNT 725

Query: 62  ----------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TG 106
                        K          S   +  L    + +         V++ +       
Sbjct: 726 LLLQLISDILDLSKIEAGTLDLHYSNVEINDLMKDLENMCQLKLKSDAVKLEFVAPEEPC 785

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++++NL   A     +G       + +     F +   G      ++ + 
Sbjct: 786 FAHIEKNRLSQLIINLVTNAIKFTIQGSIRFGYKRQNNE-LYFYVADTGCGIPQDKQKSI 844

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S      +       L      ++  E  + +       L 
Sbjct: 845 FGRFVKLNSFAQGTGLGLSICQTLVEHMGGKIGVESEEGNGSTFWFTLP 893


>gi|253699164|ref|YP_003020353.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
 gi|251774014|gb|ACT16595.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
          Length = 689

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 71/241 (29%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           MA+ I  +   M+ V +L   I HD  + +  +   + L    + E       +  +  +
Sbjct: 444 MAEQIRQS-QKMEAVGVLAGGIAHDFNNLLTGMIGYVSLALMTMKEEDPAANYLDRVVSA 502

Query: 57  SMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +          L F R    +   VD    + ++ +++   +     ++V      + + 
Sbjct: 503 ADRAADLTQRLLAFSRKQISHPEPVDLNQIVNNVRKLLSRLVTAKIELKVEPREGMLPVV 562

Query: 113 RE---RAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKIN 154
            +     ++++NL   A  ++P                    +       +  + S+   
Sbjct: 563 ADSSQVDQVVMNLVTNARDAMPAGGTLTITTEAMELTEEWVESHGYGSIGSYAVLSVTDT 622

Query: 155 GNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           G       +   +        +     +    V  +  E++  L            +  L
Sbjct: 623 GTGMDEATRAHVLEPFFTTKEVGKGSGLGLAIVYGIVKEHEGYLEICSEPGVGTTFNVYL 682

Query: 214 E 214
            
Sbjct: 683 P 683


>gi|159043629|ref|YP_001532423.1| integral membrane sensor signal transduction histidine kinase
           [Dinoroseobacter shibae DFL 12]
 gi|157911389|gb|ABV92822.1| integral membrane sensor signal transduction histidine kinase
           [Dinoroseobacter shibae DFL 12]
          Length = 585

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIED------E 48
           + +       S  L AL  + + + H++  P+ A+   L     LL     ++       
Sbjct: 346 LEQAEQTLAQSQKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRKRPDESLSSFAR 405

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +  LI            F R        VD    L     ++E  I  +         ++
Sbjct: 406 IDDLIDRMGKITRQLKSFARKGEDAFQIVDLREALSAALAIMEPQIKQEFVKIERNMPKQ 465

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
               +       ++++NL   A  +        + +   +      S++ NG      E 
Sbjct: 466 PVLVMGDRIRLEQVIVNLLRNAMDATAGTPNPVVEIDLTTGETARLSVRDNGPGITDFE- 524

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             QI +    +    D   +       +  ++  RL+         V    L 
Sbjct: 525 --QIFEPFYTTKRPGDGVGLGLAISSGIVSDHGGRLMARNRTSRGAVFEMRLP 575


>gi|322436618|ref|YP_004218830.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321164345|gb|ADW70050.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 386

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS------LELLDEVGIEDEVMQL 52
           MA+       S  L A+  L S I H+I +P+ A+ N        + L++      + ++
Sbjct: 148 MAEQALRR--SEKLAAVGQLASSIAHEINNPLEAVLNLVYLVRGADTLEDARHYANLAEI 205

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKI 109
             +      ++             V+    +  I ++         +     +  + E  
Sbjct: 206 ELVRVADITMQTLRFHRQQTAAAPVNLEDTITAILRLYASRFPARRIKVEQYLRASHEPY 265

Query: 110 DLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            L  +  ++L NL   A+ ++P              ++ S      ++   G       +
Sbjct: 266 LLEGDIRQVLNNLIRNAYDAMPHGGTLTIRLHSATCLKTSIPGVRITIADTGTGFLPAMR 325

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +    +  +    +  +++ R+     +    V +  L 
Sbjct: 326 GHLFEPFHTTKEVTGTGLGLWITKGIVDKHEGRIYMRSREGQGTVFTIWLP 376


>gi|253571812|ref|ZP_04849217.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838409|gb|EES66495.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 599

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 68/235 (28%), Gaps = 25/235 (10%)

Query: 1   MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + +     + + +       L +   + + H+I +P+ AI     +L+E   ++E  Q I
Sbjct: 363 LKETEQMLIKAKEKAEEADCLKSAFLANMSHEIRTPLNAIVGFSSMLEEAEDQEEKHQYI 422

Query: 54  RLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            +   +  + L+                 +      +      L    Q+        + 
Sbjct: 423 TIIEDNNKLLLQLISDILDLSKIEAETFDIIPERVNAKQLCNDLFQAIQMKTSPQVELRL 482

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                            ++LLN    A       G +TI  Q   NE  FS++  G    
Sbjct: 483 KDNLPELTFTSDKNRLYQVLLNFVTNALKFTSE-GNITIDYQIDGNEVKFSVQDTGMGI- 540

Query: 160 FPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            PEK   I    V   S I    +       +  +   ++  E            
Sbjct: 541 EPEKQEAIFTRFVKLNSFIPGTGLGLSICQSIVTQLGGKIGVESEPGKGSCFWFT 595


>gi|238895766|ref|YP_002920502.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Klebsiella pneumoniae NTUH-K2044]
 gi|238548084|dbj|BAH64435.1| hybrid sensory histidine kinase in two-component regulatory system
           with RcsB [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 946

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 450 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKALPKGVDRLVTAM 509

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 510 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYLPLVVRKQLGLYCFI 569

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +     +         +++ NL   A       G + + VQ + +    S++  G     
Sbjct: 570 EPDVPEQMSGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVQCAGDYLQISVRDTGEGIPA 628

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  E         +  + 
Sbjct: 629 KEVL-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDIAVETEPGMGSRFTIRIP 687


>gi|167755722|ref|ZP_02427849.1| hypothetical protein CLORAM_01237 [Clostridium ramosum DSM 1402]
 gi|167704661|gb|EDS19240.1| hypothetical protein CLORAM_01237 [Clostridium ramosum DSM 1402]
          Length = 639

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +  +L        E++ MQL  +   
Sbjct: 398 KEEAAIEAKNERLRANLLRSISHDLRTPLTSISGNASVLINNSGSLDENKKMQLYEVIYD 457

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
            ++  +  +      T   D  + L    ++IE+ I            E     +     
Sbjct: 458 DSLWLINLVENLLSVTRIEDGKMNLHLETELIEEVINEALNHISHKKDEHRIEVKANDEF 517

Query: 117 -----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++++N+   A    P+G  ++I     K+     +  +G      +   
Sbjct: 518 ILAKIDAGLIIQVIINIVDNAIKYTPKGSMISIETFKHKDFVEIQIADDGAGISDKD-KE 576

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +       +         +       +   +   +  +    H  + S  L 
Sbjct: 577 KLFEMFYTVKHEVIDGRRGLGLGLALCKAIIVAHGGNIAVKDNIPHGTIFSFTLP 631


>gi|222054922|ref|YP_002537284.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564211|gb|ACM20183.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 756

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 59/231 (25%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           +   +  +   +   A + S   HD+  P+  I + + LL+              +  + 
Sbjct: 526 LLSEVQRSNQELQQFAYIAS---HDLQEPLRMISSYISLLERKYSGQLDEKAITYLSYVV 582

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------EQVIEDFIAVDKRVQVSWTGEK 108
             +      ++ +      +     +    +         + +        V        
Sbjct: 583 DGAKRMQKLIEGLLNYSRISREARLVPVDTNESFSAAVANLEQRIRESGGDVTNDPLPIV 642

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLA---RFPEK 163
           +    +  ++  NL          G    +    + +  E +FS+  NG       +   
Sbjct: 643 LGDETQLVQLFQNLVGNGLKYRKPGSIPHVHLSARPAGLEWLFSVSDNGIGIESQHYDRV 702

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F      + +       I       +   +  R+  E           +L 
Sbjct: 703 FQIFQRLHTKEEYPGTGIGLALCKKIVERHGGRIWVESRPGEGTTFYFILP 753


>gi|87199594|ref|YP_496851.1| multi-sensor signal transduction histidine kinase [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135275|gb|ABD26017.1| multi-sensor signal transduction histidine kinase [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 515

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 64/243 (26%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAI----HNSLELLDEVGIEDEV 49
           +A+     L +       L AL  + S + H+I  P+ AI      S  LL       + 
Sbjct: 264 LAEARLQELQNELVHVSRLTALGEMASALAHEINQPLSAIANYLRGSATLLARPDPPLDR 323

Query: 50  MQLIR--------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVD 97
           +             +         F+               + +   +     ++     
Sbjct: 324 VADAVERAAKEALRAGDIIRRLRDFVGRGETERTVESLPKLVEEASALALVGAKEHGIRV 383

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLK 152
           +          +    +  +++LNL   A  ++  G             D+ +    ++ 
Sbjct: 384 RYAFSPDVDLVLADKVQIQQVVLNLVRNAVDAMSAGEGDGRELLVSIDPDTDDAARVTVS 443

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +G      +   Q+    V +      +       +   +  R+  E            
Sbjct: 444 DSGPGI-SQDVADQLFQPFVTTKRTGMGVGLSISRTIVEAHGGRIWAERSALGGAQFCFT 502

Query: 213 LEK 215
           L +
Sbjct: 503 LPR 505


>gi|83950397|ref|ZP_00959130.1| ATP-binding region, ATPase-like:Histidine kinase,
           HAMPregion:Histidine kinase A, N-terminal [Roseovarius
           nubinhibens ISM]
 gi|83838296|gb|EAP77592.1| ATP-binding region, ATPase-like:Histidine kinase,
           HAMPregion:Histidine kinase A, N-terminal [Roseovarius
           nubinhibens ISM]
          Length = 655

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
           + +     + S  L ++  + + + H+I +P+  I  +++++ E            + L+
Sbjct: 413 LEETFQQLVMSEKLASIGEITAGVAHEINNPVAVIQGNMDVVREVLGEAARPVATEIDLV 472

Query: 54  RLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--- 104
                     +  +               VD    + D   ++   IA  +    +    
Sbjct: 473 DRQVGRIQAIVGKLLQFARPNEFSDCAEMVDLRPVVEDSLVLVGHVIAKGRITVETEFGP 532

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160
                    E  ++++NL M A  ++   G +      + ++ +      ++ +G     
Sbjct: 533 APWVRIYPGELQQVIINLIMNAVQAMGGAGTLWLALSEAAREGRRGAQIVVRDSGPGIPE 592

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +              +   +       L       +      D        L 
Sbjct: 593 DKIAAVFDPFFSTKQAEGTGLGLSISQTLVQNAGGLISVRNHPDGGAEFRVWLP 646


>gi|317475553|ref|ZP_07934815.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908257|gb|EFV29949.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 912

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 61/230 (26%), Gaps = 21/230 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN       +    L  + + H+I +P+ AI     +L     E+E  + I +   +  
Sbjct: 541 AKNRAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSILATAEEEEEKSEYINIIENNNQ 598

Query: 62  IRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           + L+ +                        V            I       + +  +   
Sbjct: 599 LLLQLISDVLDIAKIEAGSLDFNYSSLDLNVLMNELESTALMRITSPDVCLEMIPDNDNC 658

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I      ++I++NL   A     +G          +    F +   G      EK  +
Sbjct: 659 WVITERNRLSQIIINLLNNAIKFTQKGKITFGYKLQKEK-IYFYVTDTGCGI-PAEKQDK 716

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  +   +      +       +       +  +    +       L 
Sbjct: 717 IFERFIKLNNFAQGTGLGLSICKSIVDAMGGEIGVDSKVGNGSTFWFTLP 766


>gi|299146808|ref|ZP_07039876.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517299|gb|EFI41180.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 1007

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI    EL+    E    D +  +   + 
Sbjct: 630 LQEAKHQAEQSDKLKSAFLANMSHEIRTPLNAIVGFSELMAYAGEEEKADYIQIINSNNE 689

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +   +    + L+    GSV+      D                 +  + ++        
Sbjct: 690 LLLKLINDILDLSKLEAGSVELKYEPFDLSEHFENMFTSMKQRLKNPDIVLTEINPYHCC 749

Query: 112 S-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    A+I+ N    A     +G               F +K  G      +K   
Sbjct: 750 RVTLDRNRVAQIITNYVTNAIKYTSKGSIKMGYACKDGG-VYFYVKDTGIGIADDKKGKV 808

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +A     ++  E + +   +  A L 
Sbjct: 809 FQRFEKLDEFAQGTGLGLSICKAIAEAMGGKVGFESVHNEGSLFWAFLP 857


>gi|253568914|ref|ZP_04846324.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|251840933|gb|EES69014.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1354

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 63/229 (27%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I  +++ + + S     +
Sbjct: 817  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYHKILGIYKNSLQLREL 874

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  + S   E    
Sbjct: 875  ITELLDFRKQEQGHMKIKVSRHNLVNFLYENYLLFLEYASSKQINFKFNKQSDDIEVWYD 934

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V       I  +K  G      E         
Sbjct: 935  QKQMQKVVNNLLSNALKHTKAEDTISINVSQENKYVIIEIKDTGTGIAAAEIDKIFDRFY 994

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +D         I       +   +   +  E            L+
Sbjct: 995  QTERLDSLNTGAGTGIGLALTKGIIELHHGTIRVESEPGKGSRFIITLK 1043


>gi|218134761|ref|ZP_03463565.1| hypothetical protein BACPEC_02664 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990146|gb|EEC56157.1| hypothetical protein BACPEC_02664 [Bacteroides pectinophilus ATCC
           43243]
          Length = 501

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +       S  L A L   I HD+ +P+  I  +   L       DE         +  
Sbjct: 262 KEEAAILAESEQLRANLLRSISHDLRTPLTTIAGNASSLLSNGKSFDEQTRYQIYQDIYN 321

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            S     +    +       G +           + D         + +  + V    E 
Sbjct: 322 DSVWLNNLVENLLYATRIEEGRMVLNTSTELLADVIDDAVRHVKQHSGEHSIFVESDDEY 381

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I ++ +     ++++N+   A    P G  +TI      N  +  ++ NGN     +K  
Sbjct: 382 ILVTADARLIVQVIINIVDNAVRYTPPGSHITIRSCSENNMAVVYIEDNGNGISDEDKEH 441

Query: 166 QIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +        S  +  Y    +   +   +     +    V    L 
Sbjct: 442 VFDKFYSGTNRIADNRRSIGLGLYLCKAIIEAHGGTITVRDNNPAGAVFVFTLP 495


>gi|121997120|ref|YP_001001907.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
 gi|121588525|gb|ABM61105.1| PAS/PAC sensor hybrid histidine kinase [Halorhodospira halophila
           SL1]
          Length = 639

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 60/238 (25%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           +     +      A   +  + I HD+ +P+ AI    +LL    ++ E    + L   +
Sbjct: 254 ERRALEVDRQRAEADRNIFLAAISHDLRTPLNAIVGFTDLLARSELDTEQRHHVGLCRSA 313

Query: 60  AIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVS 103
           +   L       +  RL  G     D    L          +              ++  
Sbjct: 314 SQTLLGLIDTVLELSRLEAGRVELRDERFNLPAFLTTQIGLLQPMAEEKGLSLIWSLEPD 373

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             G          ++L NL   A      G       + +    +F++   G      + 
Sbjct: 374 MPGWVRGDPVRFGQVLYNLVSNALKFTETGSIRVDGARSTCGRLMFTVADTGPGIPEAD- 432

Query: 164 FTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214
             +I D   +        +   +       L       +              +  L 
Sbjct: 433 QGRIFDAFCQGGPVLARKEGSGLGLKICQELVRLMGGTIQLVSTPGVGTTFRFTVTLP 490


>gi|86144435|ref|ZP_01062767.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
 gi|85837334|gb|EAQ55446.1| hypothetical protein MED222_08498 [Vibrio sp. MED222]
          Length = 880

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 27/235 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               +S+    ++  + + H+I +P+  I    E+L +  +     +++     S+   L
Sbjct: 378 KEDAISANKAKSVFLANMSHEIRTPLNGIIGMAEILSQSQLSANQQEVLEDIESSSHSLL 437

Query: 65  K--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                           + L+       +++     +         ++  + +        
Sbjct: 438 VLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDINIDAQTPTQL 497

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164
                   ++L NL   A     +G   T       +    +   S+   G     PEK 
Sbjct: 498 FFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKLECSVSDTGIGI-EPEKL 556

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             I +        +        +       L       +    +       +  L
Sbjct: 557 ESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGGGSTFTFCL 611


>gi|116749295|ref|YP_845982.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116698359|gb|ABK17547.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 869

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/228 (9%), Positives = 55/228 (24%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRL 55
           A+ +      ++  A + S   HD+  P+  I    +LL +             ++ +  
Sbjct: 635 AERLALINQELEEFAFVAS---HDLQEPLRKIKTYGDLLQKRCAPCLDDAGLGFLERMLR 691

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWTGEKIDL 111
           S+      L  +          +    +   E V              +++         
Sbjct: 692 SADRMRRLLNDLLQYSRVAAKQEPFKEIQLGEVVREAANVFEQRAGGLIEIRKLPTIEAD 751

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-TQIVDG 170
             +  ++  NL   A                  ++    + +  N   F + +  +I   
Sbjct: 752 ESQMLRLFQNLIGNALKFCGAASPQVKISAKCDHKGGCEIHVEDNGIGFEQHYAERIFKP 811

Query: 171 NVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +   +       +   +   +  E            L 
Sbjct: 812 FQRLHGRDEYEGTGMGLAICRKIVERHGGNIRVESEPGKGSTFIIRLP 859


>gi|300932571|ref|ZP_07147827.1| two-component system sensor kinase TcsS5 [Corynebacterium resistens
           DSM 45100]
          Length = 381

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K+    +S++D        L +   H++ +P+ ++  ++ELL +       +     +
Sbjct: 132 LTKSFNDMMSALDDAQTKQRNLVADASHELKTPLTSMRTNIELLMQASKNKHTISDQDRN 191

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE------------DFIAVDKRVQVSW 104
            +   +  +   ++      V+          +                      V+   
Sbjct: 192 DIERDVIAQIEEMSSLIGDLVELAREETHEVPLTIVDVTGILQGCIGRVQRRRPDVKFEL 251

Query: 105 TGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                 +  +     + LLNL   A    P  G V I +     E    +  +G      
Sbjct: 252 RPTTWTMEGDSFGLNRALLNLLDNAAKWSPSNGTVRIDMVPGDRELELRVSDSGPGIPVE 311

Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    F +        ++    +    V  +   +   +  +  DD   ++   L 
Sbjct: 312 ERERVFDRFYRSIASRSMPGSGLGLSIVKHMVERHGGSIRADESDDGGTMMVVRLP 367


>gi|317131254|ref|YP_004090568.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
 gi|315469233|gb|ADU25837.1| multi-sensor signal transduction histidine kinase [Ethanoligenens
           harbinense YUAN-3]
          Length = 460

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 64/224 (28%), Gaps = 22/224 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   +   H++ +P+ AI   +EL++     E       +  IR  +   I  +  
Sbjct: 235 EQIRSEFVANASHELKTPLTAIKGFVELMEADIITEPDQIKSYLGRIRKETERMIELIND 294

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIED---------FIAVDKRVQVSWTGEKIDLSRE-RA 116
           +                    ++                +  VQV      +  + +   
Sbjct: 295 ILHLSELESVNADTGFTAVSMKLTAQRAAESVALSAHKRNVSVQVEGDVGTVRANPDRMM 354

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           ++ LNL   A       G V +++        F +   G     PE   ++ +       
Sbjct: 355 QLALNLIDNAVKYNKPDGNVRVTIISKDGNVHFCVNDTGVGI-PPEARQRVFERFYRVDK 413

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V  +    K R+  E I      ++ +L 
Sbjct: 414 GRSRRQGGTGLGLSIVKHIVGLYKGRIEIESIVGEGTSITVILP 457


>gi|317052256|ref|YP_004113372.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947340|gb|ADU66816.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1253

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 55/239 (23%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    ++  + + H+I +P+  I    EL  +  +     + + ++  SA
Sbjct: 562 LREAKNVAEEASRAKSIFLANMSHEIRTPMNGILGMTELALQTELSTTQRRYLTIAHNSA 621

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +             +            I +   +    
Sbjct: 622 KSLLVIINDVLDFSKVEAGEIRLEQTSFDPVETVENVMQSIAYSAYSKGIELMNHIDHRL 681

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160
           +   +       +IL NL   A      G            DS+    F +   G     
Sbjct: 682 SHYLVGDPTRLQQILNNLLGNAVKFTDTGHVLLDVEVQGESDSEAHLHFRVIDTGIGIPA 741

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +     +              +       L H    R+  E           ++ 
Sbjct: 742 NKIDSIFESFSQVEASDRRKFGGTGLGLAITRKLVHLMNGRIWVESHMGEGSTFHFVIP 800


>gi|237734688|ref|ZP_04565169.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382016|gb|EEO32107.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 639

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +  +L        E++ MQL  +   
Sbjct: 398 KEEAAIEAKNERLRANLLRSISHDLRTPLTSISGNASVLINNSGSLDENKKMQLYEVIYD 457

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
            ++  +  +      T   D  + L    ++IE+ I            E     +     
Sbjct: 458 DSLWLINLVENLLSVTRIEDGKMNLHLETELIEEVINEALNHISHKKDEHRIEVKANDEF 517

Query: 117 -----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++++N+   A    P+G  ++I     K+     +  +G      +   
Sbjct: 518 ILAKIDAGLIIQVIINIVDNAIKYTPKGSMISIETFKHKDFVEIQIADDGAGISDKD-KE 576

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +       +         +       +   +   +  +    H  + S  L 
Sbjct: 577 KLFEMFYTVKHEVIDGRRGLGLGLALCKAIIVAHGGNIAVKDNIPHGTIFSFTLP 631


>gi|254523833|ref|ZP_05135888.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp.
           SKA14]
 gi|219721424|gb|EED39949.1| periplasmic sensor hybrid histidine kinase [Stenotrophomonas sp.
           SKA14]
          Length = 991

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 68/243 (27%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            ++      S +      +   + + H+I +P+  +   LELL    ++    + +    
Sbjct: 525 REDSEAARQSAEAANRAKSAFVATMSHEIRTPLNGVLGHLELLARSPLQPGQRERLDRIR 584

Query: 58  MSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQ 101
            SA   ++     +  +    G +D       +  +IE              + +   V 
Sbjct: 585 FSADALMRIISDVLDFSKIEAGQLDVEPVPFALRPLIEGVALLFAPDALRKGVRLYFTVD 644

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNL 157
            +     +  +    +IL NL   A      G                +    +  +G  
Sbjct: 645 AAADQRCVGDAHRIRQILTNLVGNAVKFTESGRILLRAELHRAAGQGAQLRVQVIDSGIG 704

Query: 158 ARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              PE+  Q+                   +     + +A     ++  E  +      + 
Sbjct: 705 M-SPEQTAQLFQPFQQADASVSRRYGGSGLGLALCLQIAQAMGGQVSVESTEGVGSSFTL 763

Query: 212 LLE 214
           LL 
Sbjct: 764 LLP 766


>gi|193215252|ref|YP_001996451.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
 gi|193088729|gb|ACF14004.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
          Length = 1333

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 66/241 (27%), Gaps = 30/241 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMS 59
            ++       ++ +  L S I HD+ + +  I  SL+LL     +D+    +  + LS+  
Sbjct: 948  ESHLLRAQRLESLGRLVSGIAHDLNNILSPILLSLQLLKRKATDDKAKGLIDTLELSAKR 1007

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLS 112
                +K +             I +    Q +E  +       +                S
Sbjct: 1008 GGNLVKQVLSFAKGVECERLPIKIEHSVQEVEKILFETFPKTIDVDILYNKPLWYVHGDS 1067

Query: 113  RERAKILLNLFMVAHASLP-----------------RGGKVTISVQDSKNENIFSLKING 155
             +  ++LLNL + A  ++                                    S+   G
Sbjct: 1068 TQLHQVLLNLCVNARDAMQVKNGGALRITVSNAVVGEREAAIYPDAQPGRYVKVSVSDTG 1127

Query: 156  NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 PE    I +    +        +    V ++   ++  +            +  L
Sbjct: 1128 TGI-APEHLDSIYEPFFTTKELGQGTGLGLSTVFMIVKSHQGFITVYSELGKGTTFNVFL 1186

Query: 214  E 214
             
Sbjct: 1187 P 1187


>gi|158522710|ref|YP_001530580.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158511536|gb|ABW68503.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1102

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 63/240 (26%), Gaps = 27/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +        ++ V +L   + HD  + +GAI    EL     D    + + ++ I  ++ 
Sbjct: 717 QEQLLQAQKLEAVGVLAGGVAHDFNNMLGAIIGFAELAIEATDSDSPQYKYLENILQAAR 776

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            +      +         V +++ L    + +   ++      +    +           
Sbjct: 777 HSADLTGQLLAFARKQTIVPTVLDLNASVEGLLKILSRLMGENIELAWQPGPGHCTVRLD 836

Query: 114 --ERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156
             +  +++ NL + A  ++                +    T +        + ++  NG 
Sbjct: 837 PSQLNQVVTNLCINARDAIVDVGNITLETDTLFFDQDYCDTHAEFTPGEYVMLAVSDNGV 896

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                                    +    V  +  +N   +       +         +
Sbjct: 897 GMDRQTMDHVFDPFFTTKKQGKGTGLGLATVYGIVKQNNGFISVYSEPGNGSTFRVYFPR 956


>gi|331086561|ref|ZP_08335639.1| hypothetical protein HMPREF0987_01942 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410394|gb|EGG89826.1| hypothetical protein HMPREF0987_01942 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 498

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------ 49
           M K +  N     L        L S I HD+ +PI AI   +E + +   +         
Sbjct: 248 MRKRLKDNAE-EKLAYDKESKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMEKYI 306

Query: 50  ---------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVD 97
                    M L+                    T SV+            ++ +  +   
Sbjct: 307 RTIYNKANEMDLLINELTLYSKIDTNRIPYNFTTLSVNEYFDDCAEDLKLELEQRDVEFG 366

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGN 156
               V      I  + +  +++ N+   +   + +        V+D  +     L+ NG 
Sbjct: 367 YFNYVEEDIRIIGDAEQLKRVINNIVTNSLKYMDKKRARINLRVKDVGDFIQVELEDNGK 426

Query: 157 LARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    F +    +           I    V  +  E+  ++     +    V+  
Sbjct: 427 GIAAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSREGTGTVMYF 486

Query: 212 LLEK 215
           ++ K
Sbjct: 487 VIRK 490


>gi|325662838|ref|ZP_08151407.1| hypothetical protein HMPREF0490_02147 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470890|gb|EGC74119.1| hypothetical protein HMPREF0490_02147 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 498

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------ 49
           M K +  N     L        L S I HD+ +PI AI   +E + +   +         
Sbjct: 248 MRKRLKDNAE-EKLAYDKESKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMEKYI 306

Query: 50  ---------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVD 97
                    M L+                    T SV+            ++ +  +   
Sbjct: 307 RTIYNKANEMDLLINELTLYSKIDTNRIPYNFTTLSVNEYFDDCAEDLKLELEQRDVEFG 366

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGN 156
               V      I  + +  +++ N+   +   + +        V+D  +     L+ NG 
Sbjct: 367 YFNYVEEDIRIIGDAEQLKRVINNIVTNSLKYMDKKRARINLRVKDVGDFIQVELEDNGK 426

Query: 157 LARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    F +    +           I    V  +  E+  ++     +    V+  
Sbjct: 427 GIAAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSREGTGTVMYF 486

Query: 212 LLEK 215
           ++ K
Sbjct: 487 VIRK 490


>gi|323694713|ref|ZP_08108873.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323501228|gb|EGB17130.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 895

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 23/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVGIEDEV 49
                +  L + L   I HD+ +P+ +I  +  +L                +++  +   
Sbjct: 658 ALLAKNEQLRSNLLRSISHDLRTPLTSISGNAGILLSSEQSIGKEKRRKLYEDIYDDSLW 717

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +  +  + +S              T  +D ++G               K  Q        
Sbjct: 718 LINLVENLLSVTRIEDGTMKLRLATELLDEVVGEALRHTDRRRCEHKIKIKQEEDFLLVK 777

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +R   ++++NL   A    P G +V I  +   N  + ++  NG+     E    I D
Sbjct: 778 ADARLIMQVIINLVDNAIKYTPPGSEVVIETKREGNLAVVTVADNGDGI-SDESKEHIFD 836

Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  S  +       +   +   +  E    H  V +  L 
Sbjct: 837 MFYTAATKIADSRRSLGLGLALCKSIITAHGGTISVEDNVPHGAVFTFTLP 887


>gi|323484285|ref|ZP_08089653.1| hypothetical protein HMPREF9474_01404 [Clostridium symbiosum
           WAL-14163]
 gi|323402437|gb|EGA94767.1| hypothetical protein HMPREF9474_01404 [Clostridium symbiosum
           WAL-14163]
          Length = 661

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 69/231 (29%), Gaps = 23/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVGIEDEV 49
                +  L + L   I HD+ +P+ +I  +  +L                +++  +   
Sbjct: 424 ALLAKNEQLRSNLLRSISHDLRTPLTSISGNAGILLSSEQSIGKEKRRKLYEDIYDDSLW 483

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +  +  + +S              T  +D ++G               K  Q        
Sbjct: 484 LINLVENLLSVTRIEDGTMKLRLATELLDEVVGEALRHTDRRRCEHKIKIKQEEDFLLVK 543

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +R   ++++NL   A    P G +V I  +   N  + ++  NG+     E    I D
Sbjct: 544 ADARLIMQVIINLVDNAIKYTPPGSEVVIETKREGNLAVVTVADNGDGI-SDESKEHIFD 602

Query: 170 GNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  S  +       +   +   +  E    H  V +  L 
Sbjct: 603 MFYTAATKIADSRRSLGLGLALCKSIITAHGGTISVEDNVPHGAVFTFTLP 653


>gi|297195413|ref|ZP_06912811.1| two-component sensor [Streptomyces pristinaespiralis ATCC 25486]
 gi|297152774|gb|EDY63125.2| two-component sensor [Streptomyces pristinaespiralis ATCC 25486]
          Length = 391

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 53/231 (22%), Gaps = 22/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMS 59
                S    A L + + H++ SP+ ++      L              +++ +   +  
Sbjct: 153 EARRRSERSNAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANR 212

Query: 60  AIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +  +                 VD    +    +          R +V  TG   DL
Sbjct: 213 VTRLIAELLDISRIDSGRLEVRRQPVDLAAAVRRHVEAHVAAGQTPDRFRVDVTGPLPDL 272

Query: 112 SRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             +     ++L NL   A                 +   S      ++   G        
Sbjct: 273 WADPDKVDQVLGNLLENAVRHGEGTVTIDIAPSPSAGGQSGTGTAVTVSDEGPGIPEESM 332

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S      +  Y V  +   +   +              +L 
Sbjct: 333 GRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRGPGGGAQFRFILP 383


>gi|283779376|ref|YP_003370131.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
 gi|283437829|gb|ADB16271.1| PAS/PAC sensor signal transduction histidine kinase [Pirellula
           staleyi DSM 6068]
          Length = 537

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           MA+        +  +  + + + H+  + +  I    ELL+         ++L+R    +
Sbjct: 300 MAQRRALEAERLAAIGQMSAGLAHEARNALQRIQAFCELLELEVESNASAVELVRRIQNA 359

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEK 108
                +      GY   V+         +V  +   + +  +   +              
Sbjct: 360 QGHMHRLFDEVRGYAAPVNLDCATCHPSEVWREAWELLQPQRSGRSAQLIEAPEGSATPW 419

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKF 164
                   ++  NL   + A+     +VTIS        +     S+  NG      E+ 
Sbjct: 420 FVDRFRMVQVFRNLLENSLAACEDPVQVTISCTDTLWHDEPALRISVLDNGPGL-SAEQK 478

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
            +I +    +      +       L   +   +  E         +   + 
Sbjct: 479 KRIFEPFYTTKTRGTGLGMAIATRLVEAHGGVIEVENRPLGSGAEIVVTVP 529


>gi|209964224|ref|YP_002297139.1| cell cycle histidine kinase CckA [Rhodospirillum centenum SW]
 gi|209957690|gb|ACI98326.1| cell cycle histidine kinase CckA [Rhodospirillum centenum SW]
          Length = 831

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 68/248 (27%), Gaps = 34/248 (13%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQ 51
           M +        + S  + A+  L   + HD  + + A+    +LL             + 
Sbjct: 439 MTEQKSLESQIVQSQKMQAIGQLAGGVAHDFNNLLTAMIGFCDLLLLRHKPGDQSFSDIM 498

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108
            I+ ++  A   ++ +            ++ + D+   + + +       +         
Sbjct: 499 QIKQNANRAANLVRQLLAFSRQQTLQPRVLSVTDVLAELSNLLRRLIGENIELRMLHGRD 558

Query: 109 ----IDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIF 149
                    +  ++++NL + A  ++P                  +         +  + 
Sbjct: 559 LGLVKVDQGQLEQVIINLAVNARDAMPGGGRLSIVTSNFSATGPVRRETEEMPPGDYVVI 618

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +   G      E   +I D    +        +    V  +  +    +  E   D   
Sbjct: 619 EVADTGVGI-PRENLQRIFDPFFSTKEVGSGTGLGLSTVYGIVRQTGGFIFVESAPDQGA 677

Query: 208 VLSALLEK 215
             S  L +
Sbjct: 678 KFSIFLPR 685


>gi|188584892|ref|YP_001916437.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349579|gb|ACB83849.1| multi-sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 73/225 (32%), Gaps = 24/225 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKF 66
           +L +   S + H+  +P+ +I+ S+ LL +         + E++Q+I+  S      +  
Sbjct: 386 ELKSQFVSTVSHEFRTPLTSINMSIGLLLDKIPGDINDDQKELLQVIQEDSERLNRLVNE 445

Query: 67  M---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +         ++   +       I    ++ +       + +++++ +     +  +  K
Sbjct: 446 LLDLSRIESGKMQMDFDYYDIKNIIQHAVKPLRIQAEEKNIQIKINVSDNLPKVRADHTK 505

Query: 118 ILLNLFM---VAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQI----V 168
           I   +      A    P  G   + I  + + N+ + S+  NG+      +         
Sbjct: 506 IGWVVSNLVGNALRYTPTDGTGVINIETKQTANKIVTSVTDNGSGISEEYQKIIFDKFLQ 565

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               EST     +       +   +   +  +            L
Sbjct: 566 VNGGESTQGGAGLGLAISREIVRAHGGDMWVDSELGEGSTFYFTL 610


>gi|270307527|ref|YP_003329585.1| histidine kinase [Dehalococcoides sp. VS]
 gi|270153419|gb|ACZ61257.1| histidine kinase [Dehalococcoides sp. VS]
          Length = 1084

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 61/233 (26%), Gaps = 23/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53
               +   +      AL+ S + H++ +P+  I  S E+L E    D  +  +        
Sbjct: 851  RSALNEQIRRRK--ALINSLV-HELRTPLTPIIGSSEILLEKLEGDARLYRVAKNISSAA 907

Query: 54   RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WT 105
               +      +   +   G        + + +    ++D++     ++            
Sbjct: 908  ESMNQRIRDLVDSAKSEIGMLKIEKRPVDIQEFMSNLQDYLGTCACIKNQTFKFEISPDP 967

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                       ++++NL   +    P G ++ I+          S+K  G          
Sbjct: 968  QNIAIDEDRFRQVMINLINNSMKFSPSGSQIEITAGPENERWHVSVKDQGCGIEQKYLGK 1027

Query: 166  QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +  Y    +   +  R+  +            L 
Sbjct: 1028 IFKPYFCINSANRDSQGMGLGLYIANQIIKLHGGRIWAKSEFGQGSEFIIDLP 1080


>gi|118579861|ref|YP_901111.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502571|gb|ABK99053.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 785

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 63/237 (26%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +P+  +   L+LL +  +++  ++L  ++  SA 
Sbjct: 397 AKENAEAANRAK--SQFLANMSHEIRTPMNGVLGMLDLLMDSRLDENQLRLASMAHGSAD 454

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                + +A          +      +  +  I +  ++  S  
Sbjct: 455 KLLEIINDILDFSKIEAGRFQLHMADFALRETVREVADMFWVKAQDKNIRLICQIDDSVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161
                      ++L+NL   A      G        +       +  F ++  G      
Sbjct: 515 NTVRGDGVRLRQVLINLVGNAVKFTENGQIFLGVSLMETTAENTQLRFEVRDTGTGIPLD 574

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +          D ++    +   +       L       +          +    L
Sbjct: 575 AQPYIFDAFSQADNSMARRHEGTGLGLAISRELVEAMGGTIGVRSEPGTGSLFWFTL 631


>gi|323700382|ref|ZP_08112294.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323460314|gb|EGB16179.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 471

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 64/232 (27%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
           +   L   + + A   + + H+I +P+ ++  +++L+           +   + +    S
Sbjct: 237 MAARLRREERMRADFVAMLSHEIRTPLTSVREAVDLVGSGTFGEVNEKQKRFLDIAGQES 296

Query: 58  MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTG 106
                                      VD    +    + +             +V    
Sbjct: 297 ERLSDLLTRLLSVSRMEAEELHLNPERVDVAGLVESTVERLVPTARAASVTLESEVEPGL 356

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L NL         RGG V +  + S  E +FS+  +G      E+   
Sbjct: 357 AVRADPAHVRQVLTNLAGNGVKFSERGGTVRLIAERSGREVLFSVADDGPGIPVDEQERI 416

Query: 167 I----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  V  +ID   +       +   +  R+  E            L 
Sbjct: 417 FLKYYREPGVRDSIDGAGLGLAIARRIVLAHDGRIWVESEPGRGATFRFTLP 468


>gi|310822435|ref|YP_003954793.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309395507|gb|ADO72966.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 647

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 76/246 (30%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43
            K +   L + D +V+L  L + + H+I +P+  + ++L  +D+                
Sbjct: 374 RKAVQTRLQAADRMVSLGTLAAGVAHEINNPLSFMLSNLRFIDDELRTLMEEGQSLSGER 433

Query: 44  -GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                E +Q   +        ++ ++            + +  +  +  +    + R + 
Sbjct: 434 GKEVWEALQETLVGGNRVNDIVRDLKTFARSNEERQGQVNVHAVLDLCANIARSELRHRA 493

Query: 103 SWTGEKIDLS------RERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFS 150
               +   +           ++ LNL + A  ++P             + QD++   + +
Sbjct: 494 RLVKDYGTIPLVLANESRLGQVFLNLIVNAAQAIPEGSDVKTNEVRITTTQDAQGWAVVA 553

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +K +G     PE   ++ D    +        +       +      R+  E        
Sbjct: 554 VKDSGVGI-PPENLARLFDPFFTTKPAGVGTGLGLSICHGIIVALGGRITVESEPGKGST 612

Query: 209 LSALLE 214
               L 
Sbjct: 613 FRVFLP 618


>gi|228902139|ref|ZP_04066303.1| hypothetical protein bthur0014_33180 [Bacillus thuringiensis IBL
           4222]
 gi|228857565|gb|EEN02061.1| hypothetical protein bthur0014_33180 [Bacillus thuringiensis IBL
           4222]
          Length = 490

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 255 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 314

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 315 ISQMESITSQFMAMSKPQVLSIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 374

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 375 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEDNFILIRIIDEGCGI-PEDRISRL 433

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 434 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIELP 480


>gi|189423637|ref|YP_001950814.1| chemotaxis protein CheR [Geobacter lovleyi SZ]
 gi|189419896|gb|ACD94294.1| MCP methyltransferase, CheR-type with PAS/PAC sensor [Geobacter
            lovleyi SZ]
          Length = 1193

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 60/247 (24%), Gaps = 35/247 (14%)

Query: 2    AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
             K +   + +    A           + I H++ +P+  I     LL    + DE    +
Sbjct: 790  QKRVEQEIRAAKEAAESANRAKTQFLANISHEVRTPLNGIMGMSHLLHMTPLADEQQDYL 849

Query: 54   RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQ 101
            R    SA                                   DI ++ +         +Q
Sbjct: 850  RHLDDSAQSLLSVINDLLDLTRIESGGFGTEQADFQLDQLARDILRIHQPVAQRKGVLLQ 909

Query: 102  VSWTGEKID----LSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKI 153
            +            +     ++L NL   A     +G        I V        F++  
Sbjct: 910  LELADGMPGLLRGVPLRLKQVLHNLVGNAVKFTDQGRVVLSISPIIVPGQSLRVRFAVCD 969

Query: 154  NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +G     PE   +I D        +        +       L       +  E       
Sbjct: 970  SGIGM-EPETIKRIFDPFSQADESISRRYGGTGLGLTICRRLTELMGGTIEVESTPGQGS 1028

Query: 208  VLSALLE 214
              + +L 
Sbjct: 1029 CFTVILP 1035


>gi|115378970|ref|ZP_01466102.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|115364009|gb|EAU63112.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
          Length = 590

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 76/246 (30%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43
            K +   L + D +V+L  L + + H+I +P+  + ++L  +D+                
Sbjct: 317 RKAVQTRLQAADRMVSLGTLAAGVAHEINNPLSFMLSNLRFIDDELRTLMEEGQSLSGER 376

Query: 44  -GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                E +Q   +        ++ ++            + +  +  +  +    + R + 
Sbjct: 377 GKEVWEALQETLVGGNRVNDIVRDLKTFARSNEERQGQVNVHAVLDLCANIARSELRHRA 436

Query: 103 SWTGEKIDLS------RERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFS 150
               +   +           ++ LNL + A  ++P             + QD++   + +
Sbjct: 437 RLVKDYGTIPLVLANESRLGQVFLNLIVNAAQAIPEGSDVKTNEVRITTTQDAQGWAVVA 496

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +K +G     PE   ++ D    +        +       +      R+  E        
Sbjct: 497 VKDSGVGI-PPENLARLFDPFFTTKPAGVGTGLGLSICHGIIVALGGRITVESEPGKGST 555

Query: 209 LSALLE 214
               L 
Sbjct: 556 FRVFLP 561


>gi|39996543|ref|NP_952494.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983424|gb|AAR34817.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|298505559|gb|ADI84282.1| sensor histidine kinase response regulator, HAMP domain-containing
           [Geobacter sulfurreducens KN400]
          Length = 654

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 62/233 (26%), Gaps = 29/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLK 65
             M+ +  L   + HD  + + AI     LL             +  I  ++  A   +K
Sbjct: 282 QKMEAIGTLAGGVAHDFNNILTAIVGFGTLLQRSLNKDNPYQIYVDQILNAADRATTLVK 341

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKI 118
            +               L  I Q IE  +A      V +              S +  +I
Sbjct: 342 RLLAFGRKQVITPLPTDLNGIIQSIEKLLARLVSEDVEFKVSLFNEPLVCHVDSGQIDQI 401

Query: 119 LLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L+NL   A  ++P                    ++         + ++   G      E 
Sbjct: 402 LMNLVTNARDAMPSGGTLTLTTDATVLNENSFSSLEQCRPGRYAVLTVSDTGLGM-DQET 460

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +        +    V  +  +++  +  +            L 
Sbjct: 461 KERIFDPFFTTKEVGKGTGLGLSMVYGIVRQHEGFVTVDSEPGAGTTFRIYLP 513


>gi|332666257|ref|YP_004449045.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335071|gb|AEE52172.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 814

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---RLSSM 58
            +       +    A L   I H+I +PI +I     LL +  + +E ++ +   + S+ 
Sbjct: 309 RQEAEQARDAEK--AFLA-NISHEIRNPINSIVGMTNLLYDTYLSEEQLEYVNTLKYSAD 365

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
                +  +                      +   +      ++S    +          
Sbjct: 366 LLHALVSDVLDISKIEQGKMEPQLEDFDFFEMAKAMCKTFEFRLSQRPIQFQCEVSPSVP 425

Query: 116 ----------AKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARF-- 160
                      +IL+NL   A      G           D +    F +K  G       
Sbjct: 426 QRFRSDSTFINQILINLMNNAFKFTEEGTISCLAEAKFIDQQQWIEFIVKDTGIGIPPDR 485

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P  F +       + +  D   +       L       +  +         + LL 
Sbjct: 486 LPFIFERFNQAGKANKVQRDGTGLGLPITKQLVELLGGNIKVQSTPGVGTTFNILLP 542


>gi|330826615|ref|YP_004389918.1| integral membrane sensor signal transduction histidine kinase
           [Alicycliphilus denitrificans K601]
 gi|329311987|gb|AEB86402.1| integral membrane sensor signal transduction histidine kinase
           [Alicycliphilus denitrificans K601]
          Length = 585

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 68/237 (28%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++     S+    +   + + H++ +P+ +I    EL++    +  V +   L    A
Sbjct: 333 LARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPLVREQSALIRQGA 392

Query: 61  IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIE-----DFIAVDKRVQVSW 104
                 +                +   V   + + ++ ++         + ++ R+    
Sbjct: 393 EHLNALLTEILDLAKVEAGSMPTHPEPVALPVLVHEVAELFRVSAVVKSLQLEARLLPEA 452

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +       +IL NL   A     +   ++ +       + +F +   G     PE 
Sbjct: 453 EQPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTDTGPGI-APEL 511

Query: 164 FTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I +   +             +       LA      L  +         +  L 
Sbjct: 512 HEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSSPGEGARFTLALP 568


>gi|315607267|ref|ZP_07882267.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
 gi|315250970|gb|EFU30959.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
          Length = 1302

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 17/229 (7%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSM 58
            + +     +    L     + I H+I +P+  I   LE L         + +++I  ++ 
Sbjct: 792  LNERKETEVREARLR--FFTMIAHEIRTPVTLIIGPLESLRRKAAGRLSDDLEMIDRNAR 849

Query: 59   SAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +  +  +                       +  V E F    ++  +++  +      
Sbjct: 850  RLLALVNQLLDFNKVQQAGGQARFRLQNIARLMAGVAERFAPAYRQRGIAFRTDYPPEDF 909

Query: 114  ER-------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                      KI+ NL   A        ++  +V          ++ NG      ++   
Sbjct: 910  VAVVEPEGLTKIISNLLTNAGKYTKDSIRLACTVDADGRHFRIEVEDNGIGIGKADREKI 969

Query: 167  IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           I    V  L   +   +  +  +      + +L 
Sbjct: 970  FNPFFQARDNKPGTGIGLSIVKTLVDLHGGEVSVDSEEGRGARFTVVLP 1018


>gi|296878312|ref|ZP_06902320.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
 gi|296430610|gb|EFH16449.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP07]
          Length = 429

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57
           ++I   +   ++ +   + + H++ +P+ +I   +E L           +  +++I   S
Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  + L          L+    +  V ++   + +        E +    +   
Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310

Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++ LNL   A       G V + V   + + +  +  NG      E   +
Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215
           I +            +    +       +       +  +             L+K
Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425


>gi|296449930|ref|ZP_06891694.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
 gi|296261200|gb|EFH08031.1| phosphate regulon sensor histidine kinase protein PhoR [Clostridium
           difficile NAP08]
          Length = 441

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57
           ++I   +   ++ +   + + H++ +P+ +I   +E L           +  +++I   S
Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  + L          L+    +  V ++   + +        E +    +   
Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310

Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++ LNL   A       G V + V   + + +  +  NG      E   +
Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215
           I +            +    +       +       +  +             L+K
Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425


>gi|302916471|ref|XP_003052046.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256732985|gb|EEU46333.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 2624

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 71/246 (28%), Gaps = 33/246 (13%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
             +N+     +    ++  + + H++ +P+  +  + ELL +  ++ + +++     +SA 
Sbjct: 1928 KRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDLDKDQLEMADSIRVSAD 1987

Query: 62   IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105
            + L  +     ++      + L  I    ED +                  + ++     
Sbjct: 1988 LLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKNVKIVQDIN 2047

Query: 106  GEKIDLSRER---AKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLA 158
               + +  +     ++L NL   +      G                   F ++  G   
Sbjct: 2048 LPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETKEHAMLTFWVRDTGIGI 2107

Query: 159  RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--L 209
               +   ++                   +       L     K ++  E  ++       
Sbjct: 2108 PPQQL-AKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEENVGTTAWF 2166

Query: 210  SALLEK 215
            +   EK
Sbjct: 2167 TVTFEK 2172


>gi|254818465|ref|ZP_05223466.1| PhoR [Mycobacterium intracellulare ATCC 13950]
          Length = 472

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L       V   + 
Sbjct: 249 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLLLARLDVQRPLE 308

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------------RAKILLNLFMVAHAS 129
              ++ +     AV     +           +               ++L NL   A   
Sbjct: 309 HNRVDLLALASDAVHDAQAIDPGRTITMKVLDGPGTPEVLGDEARIRQVLSNLIANALQH 368

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ +  +   G      +    F +    +           +   
Sbjct: 369 TPESADVTVRVGTDGDDAVLEVADKGPGMSEQDASRVFERFYRTDSSRARASGGTGLGLS 428

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 429 IVESLVRAHGGVVSVTTAPGEGCCFRVTLPR 459


>gi|237710942|ref|ZP_04541423.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229454786|gb|EEO60507.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 1029

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     + +    L  + + H+I +P+ AI     +L     E E  + I +   +  
Sbjct: 659 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILATAEEEQEKQEYINIIESNNT 716

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +  ++      D L  +  + +   +   V           
Sbjct: 717 LLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGVQLIAHKGLPSC 776

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   + R   +LN  +   +     G +T   +    E  F +K  G      +  +  
Sbjct: 777 PIKTEKNRLMQVLNNLLNNASKFTSQGSITFGYELCGRELYFYVKDTGCGIPADKVNSIF 836

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +      R+  E  +         + 
Sbjct: 837 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 884


>gi|255656614|ref|ZP_05402023.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-23m63]
          Length = 758

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57
           ++I   +   ++ +   + + H++ +P+ +I   +E L           +  +++I   S
Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  + L          L+    +  V ++   + +        E +    +   
Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310

Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++ LNL   A       G V + V   + + +  +  NG      E   +
Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215
           I +            +    +       +       +  +             L+K
Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425


>gi|255307672|ref|ZP_05351843.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
 gi|306520996|ref|ZP_07407343.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 441

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57
           ++I   +   ++ +   + + H++ +P+ +I   +E L           +  +++I   S
Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  + L          L+    +  V ++   + +        E +    +   
Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310

Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++ LNL   A       G V + V   + + +  +  NG      E   +
Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215
           I +            +    +       +       +  +             L+K
Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425


>gi|126700251|ref|YP_001089148.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|254976230|ref|ZP_05272702.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255093617|ref|ZP_05323095.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255101805|ref|ZP_05330782.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255315365|ref|ZP_05356948.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255518030|ref|ZP_05385706.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255651146|ref|ZP_05398048.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260684212|ref|YP_003215497.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260687871|ref|YP_003219005.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|115251688|emb|CAJ69523.1| Two-component sensor histidine kinase [Clostridium difficile]
 gi|260210375|emb|CBA64751.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260213888|emb|CBE05916.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 429

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57
           ++I   +   ++ +   + + H++ +P+ +I   +E L           +  +++I   S
Sbjct: 191 EDITKKVKLENMRSDFVANVSHELKTPLTSISGFVETLKSNENIDVNTRNRFLEIIESES 250

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  + L          L+    +  V ++   + +        E +    +   
Sbjct: 251 DRLKRLIDDILLLSFVENKDTLLMENVVVYDVFKEVYEITQHSASEKNIEVLYKCDDKSI 310

Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++ LNL   A       G V + V   + + +  +  NG      E   +
Sbjct: 311 SILSNKDYIKQVFLNLVDNAIKYTQDNGIVQVVVLKDEEKIVIKVIDNGVGI-PKEDVER 369

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LEK 215
           I +            +    +       +       +  +             L+K
Sbjct: 370 IFERFYRVDKARSRDVGGTGLGLAITKHIVKSLNGCIKVKSELGIGSEFIVTILQK 425


>gi|307825996|ref|ZP_07656210.1| multi-sensor signal transduction multi-kinase [Methylobacter
            tundripaludum SV96]
 gi|307732971|gb|EFO03834.1| multi-sensor signal transduction multi-kinase [Methylobacter
            tundripaludum SV96]
          Length = 1710

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 18/231 (7%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +N    L    L AL  L   + H+I +P+  I N +E   +   +++  +++  +  
Sbjct: 1479 LQENQEHMLQMEKLSALGTLVGGVAHEINNPLMGIMNFVEFAADRSTDEKSKEVLDQALQ 1538

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGEKIDLS 112
                  K +     +  +     G   + +VI+              + V         +
Sbjct: 1539 QIHRIKKIVSNMLLFIHTRSVPSGNCQVAEVIKQTQLLLEGELSKNGIAVEVDAANDLPA 1598

Query: 113  RER-----AKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +IL+NL + A  +L   R  ++ I V+  +     S+  NG      +  +
Sbjct: 1599 IRCSADSLQQILVNLIINARDALADSRQPQIKIIVRPMEEMLELSVTDNGPGI-PQDIQS 1657

Query: 166  QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +    +  L  +    +  E I  H   +     
Sbjct: 1658 KIFDPFFTTKPPGKGTGLGLSVIRRLVQDVGGNIQVESIYGHGCCMRLRFP 1708


>gi|265750529|ref|ZP_06086592.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263237425|gb|EEZ22875.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 1045

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     + +    L  + + H+I +P+ AI     +L     E E  + I +   +  
Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILATAEEEQEKQEYINIIESNNT 732

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +  ++      D L  +  + +   +   +           
Sbjct: 733 LLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIAHKGLPSC 792

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   + R   +LN  +   +     G +T   +    E  F +K  G      +  +  
Sbjct: 793 PIKTEKNRLMQVLNNLLNNASKFTSQGSITFGYELCGRELYFYVKDTGCGIPADKVNSIF 852

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +      R+  E  +         + 
Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|237727241|ref|ZP_04557722.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|229434097|gb|EEO44174.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
          Length = 1045

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     + +    L  + + H+I +P+ AI     +L     E E  + I +   +  
Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILATAEEEQEKQEYINIIESNNT 732

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +  ++      D L  +  + +   +   +           
Sbjct: 733 LLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETSGIQLIAHKGLPSC 792

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   + R   +LN  +   +     G +T   +    E  F +K  G      +  +  
Sbjct: 793 PIKTEKNRLMQVLNNLLNNASKFTSQGSITFGYELCGRELYFYVKDTGCGIPADKVNSIF 852

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +      R+  E  +         + 
Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|256830426|ref|YP_003159154.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579602|gb|ACU90738.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 602

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 64/221 (28%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAF 71
             + + H++ +P+ +I    E L      +       ++ ++R ++    +  + ++L+ 
Sbjct: 374 FVANVSHELRTPLTSIKGYAETLVGIDKYDPEQTRSFLEVILRNANHMNTMLDELLQLSR 433

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KIDLSRERAKILLNL 122
              G +   +   +    +         +  +                   +  ++  N+
Sbjct: 434 LEHGKLRLDLVSVEPASAVYSAWKSCHPLSKNIEFTSELDASTPAVRANFEQLVQVFRNV 493

Query: 123 FMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176
           F  A   +P    V       S  E +  ++ NG      +    F +      +  S+I
Sbjct: 494 FENAIKYVPEETAVIRVHGHTSGPELVVFIEDNGPGIPAEDQTRIFERFYRVEKDRNSSI 553

Query: 177 DSHDIQFYYVILLAHENKIRLLPEI---IDDHNVVLSALLE 214
               +       +   +  R+  +               L 
Sbjct: 554 GGTGLGLAISRHIMANHGGRITVQSPVPETGIGSRFIITLP 594


>gi|196042334|ref|ZP_03109608.1| putative sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196047736|ref|ZP_03114936.1| putative sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196021426|gb|EDX60133.1| putative sensor histidine kinase [Bacillus cereus 03BB108]
 gi|196026828|gb|EDX65461.1| putative sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 337

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + K       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 95  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVATSEIEKQEYLKILYM 154

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    I       + +   
Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIEFLPEISKHNIKLQVLMPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKIIGVELLETDAAYELLIWDKGPGIPKHDL 274

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E I          + K
Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESIPWERTTFGFSIPK 331


>gi|37523730|ref|NP_927107.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214735|dbj|BAC92102.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 342

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 56/221 (25%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             S + H++ +P+ +I   ++ L               +++I+  +      ++ +    
Sbjct: 106 FVSTVSHELRTPLTSIKGFVDTLLRSGSQLSEAQHRRFLRIIKNQADRLTRLVEDILTVS 165

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----------IDLSRERAKILLN 121
                    +        + D +  +   + +    +                  +IL N
Sbjct: 166 RIQSGRLKNLPQRLDLGEMIDRVFENLAQKYAAQRMRRELPGALPEVWADQDRLEQILTN 225

Query: 122 LFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173
           L   A      G  V +S     + +N    +++  G               +       
Sbjct: 226 LIDNALKYSEHGAPVCVSADLDPEDRNVLWIAVRDLGIGIPEENLDQIFNRFSRIDSPLT 285

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +  Y    L       +  E         +  L 
Sbjct: 286 REREGTGLGLYITKSLVESLGGTIHVESRYGVGSTFTVSLP 326


>gi|307545605|ref|YP_003898084.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
 gi|307217629|emb|CBV42899.1| multi-sensor hybrid histidine kinase [Halomonas elongata DSM 2581]
          Length = 911

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 61/239 (25%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A     + +     +   + + H+I +P+  I     LL    +     + +     + 
Sbjct: 252 LAHRRALDANRAK--SEFLANMSHEIRTPLNGIIGFCRLLHRSELNARQREWLDHVRRAC 309

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSW 104
                     +  +    G ++      D+  ++++ + +               V    
Sbjct: 310 DNLLMLVNDVLDFSKIEAGRLELEHRPLDMVALVDEVLGLQAPQAQQKNLQLLGLVYDDV 369

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
            GE         ++L NL   A     RG  +          ++     S+   G     
Sbjct: 370 PGELFGDPLRIRQVLTNLVHNAVKFTDRGEVIVRVSVEDTSHNQTTLNVSVSDTGIGLSQ 429

Query: 161 PEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +  + + +       +       L  +    +  +            L 
Sbjct: 430 ACQRQLFDAFRQGETSHQRQFGGTGLGLAICRQLVEQMGGEISVDSESGQGSTFFFTLP 488


>gi|296137724|ref|YP_003644968.1| sensory box histidine kinase/response regulator [Salinibacter ruber
            M8]
 gi|295981893|emb|CBH22851.1| sensory box histidine kinase/response regulator [Salinibacter ruber
            M8]
          Length = 1501

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 68/258 (26%), Gaps = 46/258 (17%)

Query: 2    AKNICFNLSSMD------LVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
             K     L          L A     + + H++ +P+ A+    +LL    + ++    +
Sbjct: 926  RKQTEMKLRDAKEQAEASLAAKERFLATMSHEVRTPLNAVLGMAQLLARTDLTEDQRSYL 985

Query: 54   RLSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKR 99
            +    S    L  +     +                 V     + D+ +       +D R
Sbjct: 986  QSIRFSGNTLLTLLDTVLDFAKLEAGEVDLEQVAFDPVRLAHHVRDMLRSKAKESDLDFR 1045

Query: 100  VQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----------KNE 146
            ++         +  +    +IL NL   A      G  V    +                
Sbjct: 1046 IEADPQLPTSVVGDAARVGQILTNLGSNALKFTDDGSVVICVEEGPASAAPAEDSEAPTW 1105

Query: 147  NIFSLKINGNLARFPEKFTQIVDGNVESTI----------DSHDIQFYYVILLAHENKIR 196
              F ++  G     PE+  +I     ++            +   +    V  L  +    
Sbjct: 1106 ITFRVEDTGIGI-PPEQRDRIFGHFNQADTDTGETRKETREGTGLGLAIVQTLVDQMGGT 1164

Query: 197  LLPEIIDDHNVVLSALLE 214
            +  E       V +  L 
Sbjct: 1165 IDLESTPGEGSVFTVRLP 1182


>gi|288925297|ref|ZP_06419232.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella buccae D17]
 gi|288338062|gb|EFC76413.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella buccae D17]
          Length = 1340

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 17/229 (7%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSM 58
            + +     +    L     + I H+I +P+  I   LE L         + +++I  ++ 
Sbjct: 830  LNERKETEVREARLR--FFTMIAHEIRTPVTLIIGPLESLRRKAAGRLSDDLEMIDRNAR 887

Query: 59   SAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +  +  +                       +  V E F    ++  +++  +      
Sbjct: 888  RLLALVNQLLDFNKVQQAGGQARFRLQNIARLMAGVAERFAPAYRQRGIAFRTDYPPEDF 947

Query: 114  ER-------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                      KI+ NL   A        ++  +V          ++ NG      ++   
Sbjct: 948  VAVVEPEGLTKIISNLLTNAGKYTKDSIRLACTVDADGRHFRIEVEDNGIGIGKADREKI 1007

Query: 167  IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           I    V  L   +   +  +  +      + +L 
Sbjct: 1008 FNPFFQARDNKPGTGIGLSIVKTLVDLHGGEVSVDSEEGRGARFTVVLP 1056


>gi|227489424|ref|ZP_03919740.1| sensory transduction histidine kinase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227090602|gb|EEI25914.1| sensory transduction histidine kinase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 461

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 16/229 (6%), Positives = 54/229 (23%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           +  ++  +      +        H++ +P+ ++    EL         +  + ++   + 
Sbjct: 228 LQDSLQKSHRQEKEMRQFVGDASHELRTPLTSVKGFAELYKTGATDDADWVLSKIQEEAG 287

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDL 111
               +    + L       +D                +   +   +  +  S     +  
Sbjct: 288 RMTTLVEDLLALTRAEGNPLDKQKVDLMEVIESLGTSLRVAYPDREITIGESEPLYVLAD 347

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++  NL +           V++       + I  ++ NG      +         
Sbjct: 348 EEKIRRVFTNLMVNGLVHGG--KDVSVLPTADDTDVIIDVRDNGQGMAPEDLEHIFDRFY 405

Query: 172 VE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +       L   +   L            +  L +
Sbjct: 406 RTDESRSRQSGGSGLGLSIAKSLVEAHGGSLSVTSTKGVGSTFTVRLPR 454


>gi|166713559|ref|ZP_02244766.1| two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 252 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPTYKGLSVI 311

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                           L   E   E    + +   
Sbjct: 312 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLVEQVREALNTQELAAEGKDQILELHV 371

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    +++ NL   A    P  G++ +S++      + S+  +G+     
Sbjct: 372 PPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAE 431

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 432 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 490


>gi|75909212|ref|YP_323508.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702937|gb|ABA22613.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 498

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIR 54
           + K    N    +L +L  S + H+  +P+  I  ++EL++  G        +  ++ I+
Sbjct: 263 LQKERELN----NLKSLFISTVSHEFRNPLSVIQTAIELIELHGQNLTETKKNTYIKRIK 318

Query: 55  LSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +  S  + ++ +                 ++      ++ +           +  + + 
Sbjct: 319 GAVQSMKLLMEDVLFMGKSDAAKLDCNPVLLNLKGFCQELIEEFTTVEISGHEIIFTCSD 378

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLAR-- 159
           E  +   +      I +NL   A    P+   +        +K   IF ++  G      
Sbjct: 379 ETTNAFMDERLLHYIFVNLLSNAVKYSPQNETIRFDLTFDQTKGVAIFRIQDEGIGIPVA 438

Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F      +   +I    +    V      +K  +     +      +  L 
Sbjct: 439 DQTHLFESFYRASNSQSIQGTGLGLVIVKRCVEAHKGEIAFNSQEGVGTTFTITLP 494


>gi|302038351|ref|YP_003798673.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
 gi|300606415|emb|CBK42748.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
          Length = 809

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 73/244 (29%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVM 50
            K++   L  +  + AL  +   I HD  + +  I++  ELL     +         ++ 
Sbjct: 419 RKDLERQLRQAQKMEALGRMAGGIAHDFNNLLTIINSWAELLTGEPGQTTRTQRGMAQIR 478

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +    ++      L F R        ++    + DI ++++  I  D ++ ++       
Sbjct: 479 EAGNKATALTRQLLAFTRHQIVERQPLNLNDRVTDIVELMKRVIGEDIQLALTLDPALGR 538

Query: 111 LSRERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLK 152
           +  +  +I   +      A  ++P                   +  +          +++
Sbjct: 539 VKADPGQIEQVVMNLVVNARDAMPHGGRLDVETKSVSIAHSDPLWPNPLTPGPYVTLAVR 598

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      +    + +    +        +    V  +  ++   +  E    H    +
Sbjct: 599 DTGCGM-DADTVAHVFEPFFTTKELGKGTGLGLSTVYGIVRQSGGTVGIESEPGHGTTFT 657

Query: 211 ALLE 214
             L 
Sbjct: 658 IYLP 661


>gi|300087186|ref|YP_003757708.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299526919|gb|ADJ25387.1| PAS/PAC sensor hybrid histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 648

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 67/233 (28%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           +         S  L A+  + + I H+I +P+  +    ELL E         E + +I 
Sbjct: 272 LRDKAEM---SSRLAAVGEMAAGIAHEINNPLTGVIGFSELLLERKDLPDDMKEELTIIN 328

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             S      +K M         V             L     V+        R       
Sbjct: 329 AGSQRVKEIVKRMLTFARQHELVQSSASIAELLDNTLEMRAYVLRTSNIEVVREYDPDLP 388

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEK 163
                + +  ++ LN+ + A  ++ +     ++T+  +        +++ +G      + 
Sbjct: 389 WMTADAGQLQQVFLNIIVNAEYAMKKVHGRGRLTVGTERVDERVRVTIEDDGGGI-PTDA 447

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +++      +    +   +       +  E+   +    +          L 
Sbjct: 448 RSRLFQPFFTTKEPGEGTGLGLSLSRGIVAEHGGTIDENGLPGVGARFIIDLP 500


>gi|269104319|ref|ZP_06157015.1| osmosensitive K(+) channel histidine kinase KdpD [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160959|gb|EEZ39456.1| osmosensitive K(+) channel histidine kinase KdpD [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 488

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 21/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57
           M K          +   L + + HD+ +P+G+I  S   L++           +L++  +
Sbjct: 251 MVKEAN---QMEQMRNTLLAAVSHDLKTPLGSIIGSATTLNDPNIHLPPQTKQELLQSIA 307

Query: 58  MSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                  + +                    V+    +G   + +E  +       V  T 
Sbjct: 308 EEGYSLNRSLTKLLDISRYSIKTLVPKCDWVEPEEVIGSAIKRVELLLKQHPISLVGDTM 367

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ NL   A         + IS        +FS+   G     PE   +
Sbjct: 368 LVSLDYTLIEQVIANLIENAAKYSSGNSPIDISTCYLDGAFVFSIADRGCGV-APEDTQR 426

Query: 167 IVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    S    +    +      L+   +K  +     +    + +  + 
Sbjct: 427 IFERFYRSEHVKVKGTGLGLAICKLIVSAHKGTISVASREGGGSIFTVQIP 477


>gi|224540763|ref|ZP_03681302.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517630|gb|EEF86735.1| hypothetical protein BACCELL_05677 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 630

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 60/229 (26%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK        +    L  + + H+I +P+ AI     +L E     E  + IR+   + 
Sbjct: 397 LAKERAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSILAETADTPESHEYIRIIEDNN 454

Query: 61  IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            + L+ +                    VD    +  +E      +  +      +  +K 
Sbjct: 455 CLLLQLINDILDLSRIEAGLLDFCYTEVDINGCIRKLEDAFHFRMPANVECIAEFGMKKC 514

Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  E+    ++L N    A      G               F ++  G      ++   
Sbjct: 515 HVYTEKNRLGQVLGNYLSNAIKYTTEGSITVGYYPPKDGNMRFYVRDTGCGISPEKQKAI 574

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +      ++A +    +               + 
Sbjct: 575 FQRFVKLDNFKQGTGLGLSICQMIAEKMHATVGVSSEIGKGSEFWIEIP 623


>gi|148239894|ref|YP_001225281.1| adaptive-response sensory kinase [Synechococcus sp. WH 7803]
 gi|147848433|emb|CAK23984.1| Adaptive-response sensory-kinase SasA [Synechococcus sp. WH 7803]
          Length = 380

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 60/231 (25%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54
           + +     +  +     L   + H++ +P+ A   +L+      I+          +L  
Sbjct: 129 LRQENETLIDRLQSQERLLRMVAHELRTPLTAATLALQSQQRGQIDLNRFRDVLKRRLEE 188

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGE---K 108
           ++ +S  +                     +    I ++ + +   D  +      +    
Sbjct: 189 IALLSKDLLEVGSTRWEALFNPQRLDLASVAAEAILELEKLWFGRDVTIHTDIPADLPLA 248

Query: 109 IDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A      G       +  +      S+  +G      E+    
Sbjct: 249 YADQRRMRQVLLNLLENALKYTQDGGTIAVSMLHRTNQWIQVSVSDSGPGIPEQEQQRIF 308

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++             +       +   +  R+            +  + 
Sbjct: 309 LDRVRLPQTSGGTSGFGVGLSVCRRIVEVHGGRIWVISEPGKGACFTFTVP 359


>gi|29346228|ref|NP_809731.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338123|gb|AAO75925.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 908

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           MA+ +       +L   L     + + H+I +P+ AI    EL+   ++   ++E M +I
Sbjct: 532 MAQQLKELKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVYSEDPAEKEEYMSII 591

Query: 54  RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           + ++   +  +             +               L  + Q       V+ ++  
Sbjct: 592 QSNNELLLRLINDILDLSKIESGILERKRETFNLAKVCNELYTMIQPKITNPDVEFQMDN 651

Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           S     I        ++ +N    A       G + +     +      ++ +G      
Sbjct: 652 SGPDCWIFLDRSRLKQVWMNYLTNAVKCTKS-GYIKMGYSIEREGIRIYVEDSGVGI-PE 709

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++               +       +       +             A + 
Sbjct: 710 ELQERVFGRFQKLNEFAQGTGLGLAISRAIIEGAGGEVGFTSTPGIGSTFWAWIP 764


>gi|189347233|ref|YP_001943762.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189341380|gb|ACD90783.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 608

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRL 55
           +++      ++L   + + + H + +P+ A+  S+ LL E              +     
Sbjct: 372 RDVTQVHEQLELKRSVIATVSHQLRTPLTALRMSIHLLLEEHTGHLNGQQADLLLAAREE 431

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDS------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           S     I    + +    +G             +G            D+ V +  T  + 
Sbjct: 432 SERLVHILDDLLDINRIESGKAHLDLSALSPCRIGAEGMEPFLLPCRDQGVSIRNTIPET 491

Query: 110 DLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                        +  NL   A      GG +T++  +      FS++  G      E  
Sbjct: 492 LPDIVADRESLMHVFANLLSNALRFTSAGGSITLNACEDDGNIRFSIEDTGTGI-DAEHM 550

Query: 165 TQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +       +   +   +    V  +   +   +  E         S  L 
Sbjct: 551 EHLFEPFYRVPGQREKNGIGLGLSIVKEIVEAHGGSVDAESTPGKGSRFSFNLP 604


>gi|326693101|ref|ZP_08230106.1| histidine protein kinase; sensor protein [Leuconostoc argentinum
           KCTC 3773]
          Length = 623

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 64/241 (26%), Gaps = 33/241 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
                + S     +  S + H++ +P+ ++ + ++ L      +  +    + +++  + 
Sbjct: 369 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAINDPEMAQNFLDVVQDETQ 426

Query: 59  SAIIRLKFMRL---------------------AFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
             I  +  +                               D +I          +     
Sbjct: 427 RMIRMINDLLELSRLDQGTMDVKLEVVNLNSLFNFVLNRFDMIIENDAKNADTPNKSYNI 486

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           KR   +          +  ++L N+   A    P GG +T  +  +K   I S+   G  
Sbjct: 487 KREFTNEDVWAEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 546

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +       +  +   R+  + +++        
Sbjct: 547 IPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYIS 606

Query: 213 L 213
           L
Sbjct: 607 L 607


>gi|255533794|ref|YP_003094166.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255346778|gb|ACU06104.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 1337

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 18/232 (7%), Positives = 58/232 (25%), Gaps = 19/232 (8%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSS 57
             K        M+      S   H++ +PI +I   L+L          + +++  I  ++
Sbjct: 1101 TKTNELQKELMEKKDEFMSIASHELKTPITSIKGFLQLTKRAAAKGTADRDMLIYIDKAN 1160

Query: 58   MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                           +    + +    +++    +  ++ +   
Sbjct: 1161 RQLENLTFLVNDLLDVSKIQAGKMQFNYSEFNIRKLIAECVDDMQNTEGYEISLKHTDDI 1220

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +         +++ N    A    P    V +  +    E    ++  G      +    
Sbjct: 1221 DIYADQHRIEQVIKNFLSNAIKYSPDNKVVIVYTKLMGKEIRVCVQDFGIGIAPDKAKLV 1280

Query: 164  FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +          +  Y    +   +   +  +  +         + 
Sbjct: 1281 FDRFFRVDHVNYQFSGLGLGLYICAEIVTRHGGTIGVQSEEGKGSEFWFQIP 1332


>gi|197103550|ref|YP_002128927.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196476970|gb|ACG76498.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 530

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 77/241 (31%), Gaps = 31/241 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           M  ++   + +++      + + H+I +P+ +I +++E LD   E    + +M +++   
Sbjct: 290 MTHSLSERMDAIEA---FAADVAHEIRNPLTSIRSAVETLDLVKEPASRERLMGVVKNDV 346

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------S 103
                 +  +          +      VD    L DI ++ +                 +
Sbjct: 347 QRLDRLVTDISNASRLDAELSRDQPKLVDVGRLLSDIVRLYQATAKTGDVRVRLEIAPGA 406

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +       +I  NL   A +  P G  VT+++       + ++  NG     PE 
Sbjct: 407 EPVRVMGREGPLGQIFRNLIDNARSFSPPGDVVTVALGRGHGRVVATVSDNGPGI-PPEN 465

Query: 164 FTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEII--DDH--NVVLSALL 213
              I +    S            +       +A  +   +  +    D      V + +L
Sbjct: 466 LETIFERFYTSRPKGAAFGGNSGLGLSIARQIAEAHGGTVQAQNRTADGEVLGAVFTLIL 525

Query: 214 E 214
            
Sbjct: 526 P 526


>gi|187778877|ref|ZP_02995350.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
 gi|187772502|gb|EDU36304.1| hypothetical protein CLOSPO_02472 [Clostridium sporogenes ATCC
           15579]
          Length = 569

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 68/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   ++    ++ +Q+I   +      +  + 
Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVEDKKNREKFLQIINDEADRLTRLINDIL 403

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + ++ +        I    +  +
Sbjct: 404 VLSNIEKQKQELIKEEIDLNELIEKVYCLVKKSAEDKNIKINIVGGKVPLLIGNKDKYNQ 463

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G+V I  +  K+  IF ++  G      E   +I +        
Sbjct: 464 MIINLIDNAIKYTEPNGEVNIGTRQDKDNIIFWVEDTGVGI-SKEHLDRIFERFYRVDKA 522

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 523 RSRAEGGTGLGLAIVKHIVLGINGKIEVKSEPKKGTKFIVKIP 565


>gi|163848580|ref|YP_001636624.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222526515|ref|YP_002570986.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163669869|gb|ABY36235.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450394|gb|ACM54660.1| GAF sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 726

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 69/244 (28%), Gaps = 33/244 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60
            +      S  L       + H++ +P+ +I    E+L   +    +   + ++  S  A
Sbjct: 471 SDRTRERESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQDLDYESQREFLQTVSNEA 530

Query: 61  IIRLKFMRLAFGYTGSVDSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
               K ++     +     +            + +   +      +  ++ +        
Sbjct: 531 ERLFKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHTQLIHHKLLIDARTPLPP 590

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVT-----------ISVQDSKNENIFSLKINGN 156
           +  +R    +I+ NL   A    P G ++             +        +  ++  G 
Sbjct: 591 VFADRDKVKQIIFNLLSNAIKYSPEGSEIQLTVRRANADDLPATHPPGQWMLIVVRDEGI 650

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               PE   ++ +                 +  Y   LL   +  R+  + ++      S
Sbjct: 651 GI-KPEDQARLFERFQRVDNSNTRQKSGVGLGLYISRLLVELHGGRIWVKSVEGSGSSFS 709

Query: 211 ALLE 214
             L 
Sbjct: 710 FTLP 713


>gi|294665893|ref|ZP_06731160.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604348|gb|EFF47732.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1364

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVVTLEK 872


>gi|302874728|ref|YP_003843361.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307690658|ref|ZP_07633104.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302577585|gb|ADL51597.1| multi-sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 568

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 69/223 (30%), Gaps = 19/223 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            +L     + + H++ +P+ +I    E L    E   +++ + +I   +      +  + 
Sbjct: 345 ENLRYQFMANVSHELKTPLTSIKGFAETLRYVKEDDKKEKFLNIINEEANRLTSLINDIL 404

Query: 68  -----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRERAK 117
                            +  +     ++   IA +K +Q+++              +  +
Sbjct: 405 TLSDIETHKDKLYEDIEVNAIIKDVFLLLKPIADEKEIQLTYDISDTTVIVSGEQNKFKQ 464

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--V 172
           +L+NL   A     R G V +     ++  + +++ NG           F +    +   
Sbjct: 465 MLINLIDNAIKYSDRNGFVKVQCFLKEDYVVITVEDNGIGIENICLNRIFERFYRVDEAR 524

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +    V  +  E K  +  E            + K
Sbjct: 525 SRARGGTGLGLAIVKHIILEFKGTIDVESEIGKGTKFIVKVPK 567


>gi|237712224|ref|ZP_04542705.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|229453545|gb|EEO59266.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 730

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 55/220 (25%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L     + + H+I +P+ AI     L+       +      + + ++ I L+    
Sbjct: 366 QSDRLKTAFLANMSHEIRTPLNAIVGFSRLMTMADNAADEKLYSDIINQNSEILLQLIND 425

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    + ++ +       V        +    +     
Sbjct: 426 ILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 485

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +++ NL   A     +G          +    F +K  G      +            +
Sbjct: 486 MQVVTNLITNAIKFTFKGEIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNT 544

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +    +  E   +        + 
Sbjct: 545 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 584


>gi|237726370|ref|ZP_04556851.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|265751928|ref|ZP_06087721.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|229434896|gb|EEO44973.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|263236720|gb|EEZ22190.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 781

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 55/220 (25%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L     + + H+I +P+ AI     L+       +      + + ++ I L+    
Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSRLMTMADNAADEKLYSDIINQNSEILLQLIND 476

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    + ++ +       V        +    +     
Sbjct: 477 ILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +++ NL   A     +G          +    F +K  G      +            +
Sbjct: 537 MQVVTNLITNAIKFTFKGEIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNT 595

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +    +  E   +        + 
Sbjct: 596 FVQGTGLGLAICRVIVEKLGGEITAESKLNEGSTFRFTIP 635


>gi|189466962|ref|ZP_03015747.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
 gi|189435226|gb|EDV04211.1| hypothetical protein BACINT_03344 [Bacteroides intestinalis DSM
           17393]
          Length = 870

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 64/231 (27%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56
           A++      ++    L  + + H+I +P+ +I    +LL +          + +  I  +
Sbjct: 639 ARDKALQADTLKSAFL--ANMSHEIRTPLNSIVGFSDLLKDIDAFSPEEVKQFVDTINTN 696

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               +  +             M   F     +  +  + D +++               +
Sbjct: 697 CTLLLALINDILDLSRIESGSMDFRFAGYNLMFVMQQIYDSQRLSMPPGVELVMKLPEES 756

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +  S    +++ N    A     +G        +     +F ++  G+     E   
Sbjct: 757 KSIVTDSIRLKQVINNFINNAKKFTTQGSITFGFQTEDPGYTVFFVEDTGSGI-SEENQR 815

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +     +S      +       +    +  +            +  + 
Sbjct: 816 RIFERFYKVDSFTQGAGLGLSICQTIVERFRGEINVSSELGKGTRFTVRVP 866


>gi|331082777|ref|ZP_08331900.1| hypothetical protein HMPREF0992_00824 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400396|gb|EGG80038.1| hypothetical protein HMPREF0992_00824 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 489

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +     L    L A L   I HD+ SP+ +I  + E L   +E        ++ R    
Sbjct: 251 QREAEMRLEKEQLRANLLRSISHDLRSPLTSISGNAENLLANEEKLPAGRRREIYRDIYD 310

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSWTG 106
            +   +  +      T   +  + L               + V         R++     
Sbjct: 311 DSKWLINLVENLLSITRIENGNMKLDMQGEIVEEVIEEALKHVNFRGKDQSVRIECDEIL 370

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   ++++NL   A    P+  ++ I  +    + I S++ NG     PE+  +
Sbjct: 371 MAKMDLKLMLQVIINLVDNAVKYTPKNAEIMIKAEAEGEKVILSVRDNGTGL-TPEQKEK 429

Query: 167 IVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + D                 +       +   +  RL          V    L K
Sbjct: 430 VFDMYYTVNRGIGDARRGMGLGLPLCQAIVKAHGSRLEVCDNTPKGTVFKFALSK 484


>gi|229168167|ref|ZP_04295894.1| hypothetical protein bcere0007_31250 [Bacillus cereus AH621]
 gi|228615262|gb|EEK72360.1| hypothetical protein bcere0007_31250 [Bacillus cereus AH621]
          Length = 429

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +     +     + + H++ SP+ +I     +L +           + +
Sbjct: 187 LARSFEEMMHDLQQLERMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105
           I   +         +            L  +            V        + +     
Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 306

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + + ++ +     ++  N+   +       G + +S++         +   G      +
Sbjct: 307 LQTVKITADHDLLNQVWTNILRNSIKFSEDTGVINVSIKQDIKNVTILISDTGIGIHLDD 366

Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  D   +    V  +   ++  +  +            L 
Sbjct: 367 QKRIFERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLP 423


>gi|224823456|ref|ZP_03696565.1| multi-sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
 gi|224603911|gb|EEG10085.1| multi-sensor signal transduction histidine kinase [Lutiella
           nitroferrum 2002]
          Length = 434

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 66/217 (30%), Gaps = 19/217 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             + + H++ +P+  I   LE L ++     +++      M    R++ +         +
Sbjct: 209 FVANVSHELRTPLTVIGGFLETLSDMPDNPALLRQFLPMMMEQSRRMQSLVEDLLILSRL 268

Query: 78  DSLIGLGDIEQVIED--------------FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           ++       E+V                       R+Q   +      ++E      NL 
Sbjct: 269 ENSPKNTANEKVNMSELLDTLMVEAEGLSQGRHQIRLQRDTSLWLWGNAQELHSAFGNLV 328

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDS 178
             A    P GG VT+  ++   + +FS+K +G             +              
Sbjct: 329 SNAVRYTPDGGDVTLCWKEEGEKLVFSVKDSGIGIPREHIPRLTERFYRVDRGRSRGNGG 388

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +   ++ RL      +     S +  +
Sbjct: 389 TGLGLAIVKHVVARHQARLEVHSEPERGSTFSVVFNR 425


>gi|254507093|ref|ZP_05119231.1| sensor histidine kinase/response regulator fusion protein [Vibrio
           parahaemolyticus 16]
 gi|219550088|gb|EED27075.1| sensor histidine kinase/response regulator fusion protein [Vibrio
           parahaemolyticus 16]
          Length = 566

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 57/234 (24%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K       S        + I H++ +P+  +  S ELL E  + DE   L+     S  
Sbjct: 192 QKARARAEESEKATKEFVAMINHELRTPLNGLLGSAELLAETQLNDEQSTLLNNLVYSGD 251

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WT 105
           +    +     ++     ++ L            +   +  S                  
Sbjct: 252 LLRLIINDILDFSKISAGMMELIPSRFEWASVKQMLNGIFQSKAVEKGVDFRIKESTPIP 311

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       ++++NL   A     +G     +          +++  G      +  T
Sbjct: 312 PILIGDFERICQVMVNLVGNAVKFTRQGSVSVTTQWKHDQ-LTITVEDTGIGIEQEDLST 370

Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +   +       L    +  +    +       +  + 
Sbjct: 371 LFDPFVQVDRTATRHFEGTGLGLAICKNLVELMRGHIHVHSVKGSGSTFTVTIP 424


>gi|254168437|ref|ZP_04875282.1| PAS fold family [Aciduliprofundum boonei T469]
 gi|289595798|ref|YP_003482494.1| multi-sensor signal transduction histidine kinase [Aciduliprofundum
            boonei T469]
 gi|197622718|gb|EDY35288.1| PAS fold family [Aciduliprofundum boonei T469]
 gi|289533585|gb|ADD07932.1| multi-sensor signal transduction histidine kinase [Aciduliprofundum
            boonei T469]
          Length = 1568

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 1    MAKNICFNLSSMD----------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
            +A N+   L S++          L  L+   + HD+ +P+  I   ++L+ E      + 
Sbjct: 1339 LANNMAVALRSLEIQKDLEKAKNLQELMLHIVSHDLKNPLAVIEGYIDLMKEGFDPSYLD 1398

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSW 104
             +      ++ I  K    +    G +D    L D          +        ++ +S 
Sbjct: 1399 AMQMAVEEASSIIEKARLFSKLGAGKIDEERKLIDLKEELENVSSLLSHKYPSGKINISV 1458

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +I       ++  N+   A         V IS+ D        +  +G       + 
Sbjct: 1459 DKIEIYAFPIIKEVFTNIIDNAFKYGA--KNVDISLIDKDENVEIRIADDGPGIPKELRN 1516

Query: 165  TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            T        S      +    V ++   +  ++  E       V    L K
Sbjct: 1517 TIFNTFETLSKKKGSGLGLSIVKMIVEMHDGKVWVEENKPKGSVFVIQLPK 1567


>gi|253700622|ref|YP_003021811.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775472|gb|ACT18053.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 796

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 60/234 (25%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAI 61
             M+ +  L   + HD  + +  I    +L      E+  +        +    S     
Sbjct: 425 QKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVDENSSLWLYLGEIVKAGERSRDMVR 484

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L F R       +VD  I   + E+ +   I  + ++          +  + +++   
Sbjct: 485 KLLAFSRKEIISPKAVDLNILCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQVDQI 544

Query: 122 LFM---VAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L      A  ++P G                               ++   G      E 
Sbjct: 545 LMNLAVNARDAMPEGGRLTIGTENATVDEAFCDYRLDARPGEYACLTVADTGFGM-DREL 603

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +    +        +    V  +  +N   L  +            L +
Sbjct: 604 TKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLDVDSEPGEGTSFRIYLPR 657


>gi|83312147|ref|YP_422411.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946988|dbj|BAE51852.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 454

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 28/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H++ +P+ A+    E +         ++          
Sbjct: 214 AKQEAEAANRAK--SQFLATVSHELRTPLNAVIGFSEAILAGATGPASLERCVEYMDLIH 271

Query: 62  IRLKFMRL------------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
              + +R                           + +     + +       VD  V ++
Sbjct: 272 SAGQHLRALIEDILDVSRIEAGRTELDEEEADPAELVRAAARLLEHKAVVTGVDFTVVIA 331

Query: 104 WTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               ++    R   ++LLNL   A    P GG+V IS +        +++  G     PE
Sbjct: 332 PDLPRMRLDPRRIRQVLLNLAGNALKFTPAGGRVGISAEHVPEGLALTVEDTGIGI-APE 390

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++                   +    V      +   +           ++ LL 
Sbjct: 391 HHAKVWQAFYQADSSLSRRHQGSGLGLAIVRHFVEAHGGTVSLASEAGKGTRITVLLP 448


>gi|258592861|emb|CBE69170.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 852

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
            K +   L  +  L AL  + S + H+  + +GAI    ++L     + E  + +     
Sbjct: 479 RKQLEQQLLRAEKLRALGEMASGVAHNFNNVLGAILGRAQILRRAVQDPEAQRGLDAIEK 538

Query: 58  ------MSAIIRLKFMRLAFGY-TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                         F R         VD    + D+  + E     +  +  +       
Sbjct: 539 AALDGANMIRRLQHFTRQRRDEEFFPVDLNQAVKDVLAMTETKWKDEANLAGTTIEVITG 598

Query: 109 -------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +    E  ++L NL + A  ++P GG + +  ++       S+   G      
Sbjct: 599 YGKISSVMGNISELREVLTNLILNAVEAMPYGGTLGLKTEEIDGWICASVSDTGIGMTDD 658

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            K            +    +       +   +   +  +        +S  L 
Sbjct: 659 VKSKVFDPFFTTKGVKGTGLGLNVSYGIIRGHHGEIAVQSRPGQGTTVSIRLP 711


>gi|257481802|ref|ZP_05635843.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289627978|ref|ZP_06460932.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289646446|ref|ZP_06477789.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|320331859|gb|EFW87797.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330873005|gb|EGH07154.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|331009436|gb|EGH89492.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 436

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426


>gi|188579809|ref|YP_001923254.1| response regulator receiver sensor hybrid histidine kinase
           [Methylobacterium populi BJ001]
 gi|179343307|gb|ACB78719.1| response regulator receiver sensor hybrid histidine kinase
           [Methylobacterium populi BJ001]
          Length = 575

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           A+     +  ++ +  L S + HD  + +  I  ++E L+     +   + + +      
Sbjct: 176 AEEALRLVQRLEAIGQLTSGVAHDFNNLLTVISGNIEFLERDVTSERSKRRLDMMRGAAA 235

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        V     +  +  +++  I    +++ +   +      +
Sbjct: 236 RGASLTAQLLAFSRRQRLEPKPVSLNRTVASMRDLLQSSIGGAVQIETALQADLWPALVD 295

Query: 115 RAKILLNLFM---VAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNL 157
             +I L +      A  ++                G              + ++   G  
Sbjct: 296 ATQIELVILNLAINARDAMAVGGRLTIETANVAVAGAPTRPEQPSPGEYVMIAVSDTGTG 355

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE   ++ +    +        +    V     ++   +  + +          L +
Sbjct: 356 M-TPEVLARVFEPFFTTKAVGKGSGLGLAQVFGFVKQSGGGIRVDTVPGEGTSFKVYLPR 414


>gi|121998683|ref|YP_001003470.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
 gi|121590088|gb|ABM62668.1| integral membrane sensor signal transduction histidine kinase
           [Halorhodospira halophila SL1]
          Length = 932

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 63/239 (26%), Gaps = 27/239 (11%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
           +     L  +D L     S + H++ +P+ +I    E+L      +     E ++++   
Sbjct: 668 RAANERLKELDQLKDEFVSMVSHELRTPLTSIRAFGEILLNNPEMDADQRREFLEVVVRE 727

Query: 57  SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVSW 104
           S      +             A      VD      +     +Q+  D          S 
Sbjct: 728 SERLTRLINQVLDLSKIESGSAQWQLEDVDLSRLAREAAESTQQLFTDRQTQLHIEIASD 787

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162
                       ++++NL   A      G         +   +    S+  NG      E
Sbjct: 788 DNAIKGDPDRLMQLIINLLSNAAKFTEPGEGQVWLRLEKGRGDTLRLSVTDNGPGI-SAE 846

Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +I D   +             +      L+A  +   L  +            L +
Sbjct: 847 DQRRIFDKFHQISQQQAGKPKGSGLGLAICRLIADAHWGTLWVDSEPGAGASFVCKLPR 905


>gi|323488812|ref|ZP_08094052.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
 gi|323397510|gb|EGA90316.1| two-component sensor histidine kinase [Planococcus donghaensis
           MPA1U2]
          Length = 522

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLI 53
           + +      + L   + + + H+I +P+  I   ++++                  +  I
Sbjct: 299 EKLMVQTEKLKLAGEIAAGVAHEIRNPMTVISGFIQMMHHDPKHRFPEYTELIQSELDRI 358

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            L     ++  K             +L  +  +     +   V          +      
Sbjct: 359 NLIISEFLVLAKPQAATLKVFSVQKALDDILLLFSSELNMNGVTLVKDWEKDFQLNGEEH 418

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQIVDGNV 172
              ++ +NL   A  S+   G+V +S++  +N+    S +  G      +    I +   
Sbjct: 419 HLKQVFINLLKNAVESMQEPGEVRVSLKAEENDMFSISFEDTGKGISEKDLNE-IFEPFF 477

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +  E+K +L          V   LL+
Sbjct: 478 TTKASGTGLGLIVSQKIIQEHKGKLSISSARGIGTVAKILLQ 519


>gi|269928977|ref|YP_003321298.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269788334|gb|ACZ40476.1| multi-sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 936

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 66/249 (26%), Gaps = 36/249 (14%)

Query: 1   MAKNICFNLSSMDL-----VALLC-----SRICHDIISPIGAIHNSLELL----DEVGIE 46
           +A      + +  L      A+L      S   H++ +P+  +   + LL         +
Sbjct: 678 LADRAALAVDNAMLYRAAQEAVLAREEFLSVASHELKTPLTTVKGWVYLLADEVRREDPD 737

Query: 47  DEVMQLIRLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFI 94
            E ++       S I R + +                     V        +    E   
Sbjct: 738 REAIREFTDELQSQIDRFEGLIADLLDASRIQQGRIDLRPEPVALNDLARRVLARFEHAP 797

Query: 95  AVDKRVQVSWTGEKI----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
               R  ++    +            ++L+NL   A    P GG V + ++   +    +
Sbjct: 798 ERTPRHTLTLEAPEPIAGIWDPDRLEQVLVNLISNALKYSPDGGDVRVRLRRDGDVVELT 857

Query: 151 LKINGNLARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
           +   G      +   ++      +           +  Y    +  E+   +        
Sbjct: 858 VSDEGIGIAPAD-QKRLFQPFSRTEAARQRASGTGLGLYITQRIVREHGGTIDLFSEPGK 916

Query: 206 NVVLSALLE 214
              ++  L 
Sbjct: 917 GTTVTVRLP 925


>gi|188585847|ref|YP_001917392.1| integral membrane sensor signal transduction histidine kinase
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350534|gb|ACB84804.1| integral membrane sensor signal transduction histidine kinase
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 525

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 68/241 (28%), Gaps = 27/241 (11%)

Query: 2   AKNICFNLSSMD-LVAL---LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLI 53
           A+ I  N+     L      L     H+  +P+ AI    EL+ +       +   + LI
Sbjct: 277 AQEIENNIEEQKRLAVFRKNLVDNASHEFRAPLSAIRGYSELIIDGIVPEQDQTHYLNLI 336

Query: 54  RLS----SMSAIIRLKFMRLAFGYTGSVDSLI-----GLGDIEQVIEDFIAVDKRVQVSW 104
                  +      L    L  G        +      +  ++ V+ D    ++ + +  
Sbjct: 337 WKHAVELNEMVDTLLDLSSLETGTINLNKEKMTAKEVLIDAMDMVLPDAEKKNQTITIDK 396

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +  K     +  ++   +      A       G + +   D++      +  NG      
Sbjct: 397 SESKTFFKGDPPRVKQIIVNLLKNAIQYTSEKGTIRLRAFDTEQYVALQVVDNGIGIPKS 456

Query: 162 E---KFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    F +    +          S  +    V  L   +  ++  +  +      +    
Sbjct: 457 ELDSIFQRFYKVDKARNQNKKSGSSGLGLAIVNELVKIHNGKIEVDSEEGKGSTFTVYFP 516

Query: 215 K 215
           +
Sbjct: 517 R 517


>gi|77360094|ref|YP_339669.1| two-component member protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875005|emb|CAI86226.1| putative two-component member protein [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1107

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 56/242 (23%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L    L A           + + H+I +P+ AI    +LL +  +  E  + +
Sbjct: 517 RKEYEAKLEHAKLQAEEAANAKQSFMANMSHEIRTPMNAIIGFSDLLMDTPLSKEQQKHL 576

Query: 54  RLSSMSAIIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
              + +A   L+ +                         V   I      +  +  + + 
Sbjct: 577 VTVNNAARSLLRLLNEILDSAKLERGKLTIEPVHFNLKPVIDSIISTFWLEAKKKNLNLT 636

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             +  S +           +IL NL   A     +G           N   F ++  G  
Sbjct: 637 LNINKSVSTAYYGDPDRLRQILTNLIGNAIKFTEQGAVTVTVSTTQNNHLFFEVQDTGIG 696

Query: 158 ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                            G          +       L       +      D        
Sbjct: 697 IAKDRIKAVFQPFVQADGTTTRRFGGTGLGTTISKQLVELMHGSIDLVSEVDKGSCFYFS 756

Query: 213 LE 214
           L 
Sbjct: 757 LP 758


>gi|89097658|ref|ZP_01170546.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087517|gb|EAR66630.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 420

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 68/220 (30%), Gaps = 13/220 (5%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAII 62
                M++++ L + I H++ +P+      L+LL E           +         A +
Sbjct: 196 MKTEKMEVISHLAASISHEVRNPLTVTKGFLQLLKEEEPGGGKRSYYLDTALEELNRAEV 255

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRER 115
            +             +S   L    +          +  +V+                + 
Sbjct: 256 IISDYLTFAKPHCETNSCFSLEGEIRKAVELITPYGNAHSVEIHCDTEEELYIKGEDAKV 315

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            + LLNL   A  ++P GG ++IS +   ++    +   G      +   ++ +    + 
Sbjct: 316 QQCLLNLLKNAIEAMPGGGVLSISAKLQDDKAELLISDTGKGMTSGQLS-RLGEPYFSTK 374

Query: 176 ID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +      ++  E + +     + LL 
Sbjct: 375 EGKGTGLGMMVVFRIIEGMGGKIKAESMLNKGTSFTILLP 414


>gi|332071350|gb|EGI81844.1| his Kinase A domain protein [Streptococcus pneumoniae GA41301]
          Length = 443

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             ++L     S   H++ +P+ +I    E +     +E  ++D+ + +I   S+     +
Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272

Query: 65  KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +          + +      + +  L    Q       +  +VQV      +  S+  
Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A     +GGK+ +  Q        S+   G      E   +I +      
Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L+     ++            +  L 
Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436


>gi|303241735|ref|ZP_07328232.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302590736|gb|EFL60487.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 503

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 81/231 (35%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS 59
           +   L +++ +     + + H++ +P+ +IH  +E + +       E E + ++   +  
Sbjct: 262 MAVALENLEEMRRGFIANVSHELRTPMTSIHGFIEGILDGTIPPEREREYLSIVSDETKR 321

Query: 60  AIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKID 110
                  +                + D    +      +    +  + +++ ++  E   
Sbjct: 322 LSRLTNDLLDLARMESGEMKLTFVTFDINELIRRCIIKLENQIVTKNIQIEANFHEEAAH 381

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
           +  ++    +++LNL   A   +  GG++ I  + SK + + S+K NG      E    +
Sbjct: 382 VYADKDSIERVVLNLLHNAVKFVQDGGQIIIETEMSKGKVMVSVKDNGAGIDSEEIGLIW 441

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    +     D     +    V  + +E+   +  E       V    L
Sbjct: 442 DRFYKSDKSRGKDKSGTGLGLAIVKNIINEHGQEIRVESEIGKGTVFYFTL 492


>gi|294624495|ref|ZP_06703177.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601208|gb|EFF45263.1| two-component system sensor protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1364

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVVTLEK 872


>gi|237718051|ref|ZP_04548532.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229452692|gb|EEO58483.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 538

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 70/228 (30%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     LL   DE  +    M L++ ++
Sbjct: 304 LIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSLLAETDEAELRHVYMSLVQENN 363

Query: 58  MSAIIRL-KFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +   + ++    G +D ++       L             D  V++ +      
Sbjct: 364 ELLLNLISDILDISKIEAGMIDLVMGRVDVPQLCREVIATFSHKKRDSAVELRFDENSPQ 423

Query: 111 LSRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +  +       ++L N    A     +G      + + +++  F +   G      +K  
Sbjct: 424 IVIDADKNRIVQVLSNFLTNALKFTTKGSITLSYLLEDESQVRFCVTDTGKGIPDEQKHE 483

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +S +    +       L      ++  E  +         
Sbjct: 484 IFNRFVKLDSFVQGAGLGLSICQSLVKRMGGKIGVESREGEGSCFWFT 531


>gi|117929307|ref|YP_873858.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus
           11B]
 gi|117649770|gb|ABK53872.1| PAS/PAC sensor hybrid histidine kinase [Acidothermus cellulolyticus
           11B]
          Length = 637

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 61/215 (28%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           SR+ H++ +P+  I    +LL    + DE  + +     +    L  +      T     
Sbjct: 272 SRMSHELRTPLNVILGFSQLLQMERLTDEQQEWVNQIFKAGRHLLDLINEVLDITRIESG 331

Query: 80  LIGLGDIEQVIEDFIAVDKR---------------VQVSWTGEKIDLSRERAKILLNLFM 124
            + L      + D I                    V            +   +++LNL +
Sbjct: 332 RLALSLEAVSLRDVIGETMVALAPLAAEREVTADWVIEDDDVTVRADRQRLRQVMLNLVV 391

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
            A     RGG V +S +   +  +  +   G     PE   ++              +  
Sbjct: 392 NAIKYNRRGGTVLVSARRCADRALIRVADTGIGI-APEHIERLFVPFDRLGADAIDAEGT 450

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +     + L       L  +       V +  L 
Sbjct: 451 GVGLPLTLRLVQVMDGELTVDSTPGDGSVFTVALP 485


>gi|330986822|gb|EGH84925.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 440

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 215 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 271

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 272 DQFLAFIRDGRDEEIKEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 331

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 332 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 391

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 392 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 430


>gi|328953028|ref|YP_004370362.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453352|gb|AEB09181.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 677

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 66/232 (28%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +     + +      L S + HD+ +P+  I  S   L    E   +   ++LI+    
Sbjct: 424 TRRAQLQVEAERFRNTLLSSVSHDLRTPLTVIAGSASSLLEAQENLDDKIRLELIQTIYE 483

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTGEK 108
            A      ++     +      I +     V+E+                 V ++   + 
Sbjct: 484 EAKRLDLVVQNLLEISRLQSGEIRINKEWHVLEEVIGCALSQLEGQLKQHSVTINLPQDL 543

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +     ++ +NL   A    P G K+ IS           +   G      ++  
Sbjct: 544 PLVQMDALLIERVFINLLENASKYTPPGTKIEISGALEPEALHLVVADQGPGLPPGQE-E 602

Query: 166 QIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +   ++         +       +   +  ++      +        L 
Sbjct: 603 RIFEKFYQARPGAIRGAGLGLAICRCIIEAHDGQINAINRPEGGAAFHFTLP 654


>gi|319764394|ref|YP_004128331.1| ATP-binding region atpase domain protein [Alicycliphilus
           denitrificans BC]
 gi|317118955|gb|ADV01444.1| ATP-binding region ATPase domain protein [Alicycliphilus
           denitrificans BC]
          Length = 585

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 68/237 (28%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++     S+    +   + + H++ +P+ +I    EL++    +  V +   L    A
Sbjct: 333 LARSEAQAQSASRAKSDFLAAMSHELRTPLTSIRGFAELMELRSKDPLVREQSALIRQGA 392

Query: 61  IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIE-----DFIAVDKRVQVSW 104
                 +                +   V   + + ++ ++         + ++ R+    
Sbjct: 393 EHLNALLTEILDLAKVEAGSMPTHPEPVALPVLVHEVTELFRVSAVVKSLQLEARLLPEA 452

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +       +IL NL   A     +   ++ +       + +F +   G     PE 
Sbjct: 453 EQPLVTDRLRLKQILNNLLSNAIKFTAQGRVELAVEPDADGRQMLFHVTDTGPGI-APEL 511

Query: 164 FTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I +   +             +       LA      L  +         +  L 
Sbjct: 512 QEVIFEKFSQGNARVSYQHGGTGLGLSLSRALATLLGGTLTVQSSPGEGARFTLALP 568


>gi|291566207|dbj|BAI88479.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 1006

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           A+NI    +   +     S + H++ +P+ AI  SL LL     + +  +  +       
Sbjct: 763 AQNISERRAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALL 822

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------- 106
                  +    + +    +G V   +     ++++   I   + +    +         
Sbjct: 823 ETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITLEILPTS 882

Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +         + L NL   A    P    VT+S     +  +F ++  G      +  T
Sbjct: 883 VQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKT 942

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     +         +       +  ++  ++  E            + +
Sbjct: 943 IFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIPR 997


>gi|291535583|emb|CBL08695.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
 gi|291540825|emb|CBL13936.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 495

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           +  N    +        L S I HD+ +PI A+    E L +         +  +  +  
Sbjct: 250 LKDNAEEKIEGEKENKTLISNIAHDLKTPITAVKGYAEGLMDGVADTPEKRDKYIRTIYN 309

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102
            ++    +  +    A   T  +                       +    I +     V
Sbjct: 310 KANEMDTLLNELTLYAKIDTNRIPYNFAKINVSEYFNDCVEEIGLDLETKNIRLAYFNYV 369

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I    +  +++ N+   +   L +    + I ++D  +     ++ NG      
Sbjct: 370 DENVLIIADPEQLRRVIHNIIGNSIKYLDKQQGFINIRIKDVGDFIQVEIEDNGRGISAR 429

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  ++     +    V+  ++ K
Sbjct: 430 DLPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKESIGTVMYFVIRK 488


>gi|258592618|emb|CBE68927.1| putative Multi-sensor signal transduction histidine kinase
           precursor [NC10 bacterium 'Dutch sediment']
          Length = 601

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 69/220 (31%), Gaps = 17/220 (7%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIR 63
           S  L  L  L S + H+I +P+ A+   LELL +   +        ++ +          
Sbjct: 381 SRKLADLGRLTSGVAHEIKNPLNAMIIHLELLKQKLNDPSETVAKSLEFLGGEVHRLDRM 440

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRER--- 115
           ++               + L  + Q +                +   G    ++ +    
Sbjct: 441 VQGFLRFVRPQTLALRPMSLNTLLQEVVRLAEAQGAHAGVTFVLRLDGTIPPINGDHELL 500

Query: 116 AKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            +  LNL + A  ++P GG VT  + + ++      +  +G      +   +I      +
Sbjct: 501 RQAFLNLVLNACQAMPDGGAVTLATDRSAEGAIRAHVIDHGIGIPAEDL-DKIFRLYYTT 559

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             D + I    V  +   +   +  +        ++    
Sbjct: 560 KPDGNGIGLSLVYRIVQMHGGSVEVDSKVGQGTTMAVTFP 599


>gi|240144353|ref|ZP_04742954.1| sensor histidine kinase [Roseburia intestinalis L1-82]
 gi|257203602|gb|EEV01887.1| sensor histidine kinase [Roseburia intestinalis L1-82]
          Length = 495

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           +  N    +        L S I HD+ +PI A+    E L +         +  +  +  
Sbjct: 250 LKDNAEEKIEGEKENKTLISNIAHDLKTPITAVKGYAEGLMDGVADTPEKRDKYIRTIYN 309

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102
            ++    +  +    A   T  +                       +    I +     V
Sbjct: 310 KANEMDTLLNELTLYAKIDTNRIPYNFAKINVSEYFNDCVEEIGLDLETKNIRLAYFNYV 369

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I    +  +++ N+   +   L +    + I ++D  +     ++ NG      
Sbjct: 370 DENVLIIADPEQLRRVIHNIIGNSIKYLDKQQGFINIRIKDVGDFIQVEIEDNGRGISAR 429

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  ++     +    V+  ++ K
Sbjct: 430 DLPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKESIGTVMYFVIRK 488


>gi|224023356|ref|ZP_03641722.1| hypothetical protein BACCOPRO_00049 [Bacteroides coprophilus DSM
           18228]
 gi|224016578|gb|EEF74590.1| hypothetical protein BACCOPRO_00049 [Bacteroides coprophilus DSM
           18228]
          Length = 480

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 73/238 (30%), Gaps = 26/238 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           M KNI     L S        S I H++ +PI AI  SL+LL++     + +E  +L + 
Sbjct: 244 MLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDDRVGDLNEEQKELAQS 301

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +    +G +     +    ++IE  I  ++     +  +    
Sbjct: 302 IQDNSERLLNITGELLNMTQVESGKLQLKPRITKPIELIEYAIKANRVQAEKFNIQIEVQ 361

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLA 158
             E               +L NL   A    P  G++ I   Q   N     ++  G   
Sbjct: 362 YPENKIGKLFVDSEKIAWVLTNLLSNAIRYSPENGRIIIGARQTEDNHIEMYVRDFGKGI 421

Query: 159 RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +          + +    +           +   L  E         +  L+
Sbjct: 422 DPRYHQSIFDHYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESEIGKGSCFTLRLK 479


>gi|149914850|ref|ZP_01903379.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. AzwK-3b]
 gi|149811038|gb|EDM70875.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. AzwK-3b]
          Length = 349

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 17/239 (7%), Positives = 63/239 (26%), Gaps = 33/239 (13%)

Query: 9   LSSMDLVALL----CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMS 59
           ++ ++    +     + + H++ +P+ A+   +E L      +    +  + ++   +  
Sbjct: 106 ITHLEQAGQMRRDFVANVSHELRTPLTALMGFIETLQGPAKGDPRASERFLGVMLSEAQR 165

Query: 60  AIIRLKFMRLAFGYTGSVDSL---------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
               ++ +                         G    +     A D  + +      + 
Sbjct: 166 MERLVRDLLSLSRVEADERVRPTDRVDLGKCLSGVGHSLRPVAEAADVHLALDLPDTPVI 225

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQD----------SKNENIFSLKINGNLARF 160
           +  +  ++      +   ++  GGK                      I +++  G     
Sbjct: 226 VPGDVDQLTQVATNLVENAIKYGGKGKTVHIGLTTDANALSLRGPAAIVTVRDEGPGIDA 285

Query: 161 PEKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +      +    +    +    V  + + ++ RL  +           +L 
Sbjct: 286 VHIPRLTERFYRIDSHRSREMGGTGLGLAIVKHIVNRHRGRLRIDSELGQGTEFRVILP 344


>gi|148984379|ref|ZP_01817667.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP3-BS71]
 gi|147923156|gb|EDK74270.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP3-BS71]
 gi|301800831|emb|CBW33487.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus pneumoniae OXC141]
          Length = 443

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             ++L     S   H++ +P+ +I    E +     +E  ++D+ + +I   S+     +
Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272

Query: 65  KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +          + +      + +  L    Q       +  +VQV      +  S+  
Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A     +GGK+ +  Q        S+   G      E   +I +      
Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L+     ++            +  L 
Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436


>gi|15901899|ref|NP_346503.1| sensor histidine kinase PnpS [Streptococcus pneumoniae TIGR4]
 gi|111657577|ref|ZP_01408315.1| hypothetical protein SpneT_02001236 [Streptococcus pneumoniae
           TIGR4]
 gi|148992074|ref|ZP_01821848.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP9-BS68]
 gi|149011939|ref|ZP_01833087.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP19-BS75]
 gi|168484407|ref|ZP_02709359.1| histidine kinase PnpS [Streptococcus pneumoniae CDC1873-00]
 gi|168486898|ref|ZP_02711406.1| histidine kinase PnpS [Streptococcus pneumoniae CDC1087-00]
 gi|168489144|ref|ZP_02713343.1| histidine kinase PnpS [Streptococcus pneumoniae SP195]
 gi|168491608|ref|ZP_02715751.1| histidine kinase PnpS [Streptococcus pneumoniae CDC0288-04]
 gi|169834271|ref|YP_001695446.1| histidine kinase PnpS [Streptococcus pneumoniae Hungary19A-6]
 gi|194398634|ref|YP_002038672.1| histidine kinase PnpS [Streptococcus pneumoniae G54]
 gi|225855571|ref|YP_002737083.1| histidine kinase PnpS [Streptococcus pneumoniae JJA]
 gi|225857656|ref|YP_002739167.1| histidine kinase PnpS [Streptococcus pneumoniae P1031]
 gi|225859839|ref|YP_002741349.1| histidine kinase PnpS [Streptococcus pneumoniae 70585]
 gi|225861901|ref|YP_002743410.1| histidine kinase PnpS [Streptococcus pneumoniae Taiwan19F-14]
 gi|298229983|ref|ZP_06963664.1| histidine kinase PnpS [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254057|ref|ZP_06977643.1| histidine kinase PnpS [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298501582|ref|YP_003723522.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|5830530|emb|CAB54573.1| histidine kinase [Streptococcus pneumoniae]
 gi|14973593|gb|AAK76143.1| sensor histidine kinase PnpS [Streptococcus pneumoniae TIGR4]
 gi|147763894|gb|EDK70827.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP19-BS75]
 gi|147929123|gb|EDK80134.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP9-BS68]
 gi|168996773|gb|ACA37385.1| histidine kinase PnpS [Streptococcus pneumoniae Hungary19A-6]
 gi|172042361|gb|EDT50407.1| histidine kinase PnpS [Streptococcus pneumoniae CDC1873-00]
 gi|183570141|gb|EDT90669.1| histidine kinase PnpS [Streptococcus pneumoniae CDC1087-00]
 gi|183572214|gb|EDT92742.1| histidine kinase PnpS [Streptococcus pneumoniae SP195]
 gi|183573954|gb|EDT94482.1| histidine kinase PnpS [Streptococcus pneumoniae CDC0288-04]
 gi|194358301|gb|ACF56749.1| PnpS histidine kinase TCS04 [Streptococcus pneumoniae G54]
 gi|225721646|gb|ACO17500.1| histidine kinase PnpS [Streptococcus pneumoniae 70585]
 gi|225724111|gb|ACO19964.1| histidine kinase PnpS [Streptococcus pneumoniae JJA]
 gi|225724845|gb|ACO20697.1| histidine kinase PnpS [Streptococcus pneumoniae P1031]
 gi|225727292|gb|ACO23143.1| histidine kinase PnpS [Streptococcus pneumoniae Taiwan19F-14]
 gi|298237177|gb|ADI68308.1| sensor histidine kinase [Streptococcus pneumoniae TCH8431/19A]
 gi|327388819|gb|EGE87167.1| his Kinase A domain protein [Streptococcus pneumoniae GA04375]
 gi|332071517|gb|EGI82010.1| his Kinase A domain protein [Streptococcus pneumoniae GA17570]
 gi|332198689|gb|EGJ12771.1| his Kinase A domain protein [Streptococcus pneumoniae GA47368]
          Length = 443

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             ++L     S   H++ +P+ +I    E +     +E  ++D+ + +I   S+     +
Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272

Query: 65  KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +          + +      + +  L    Q       +  +VQV      +  S+  
Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A     +GGK+ +  Q        S+   G      E   +I +      
Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L+     ++            +  L 
Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436


>gi|303259584|ref|ZP_07345560.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP-BS293]
 gi|303262029|ref|ZP_07347974.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP14-BS292]
 gi|303264485|ref|ZP_07350404.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS397]
 gi|303266794|ref|ZP_07352675.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS457]
 gi|303268986|ref|ZP_07354769.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS458]
 gi|302636669|gb|EFL67159.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP14-BS292]
 gi|302639136|gb|EFL69595.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP-BS293]
 gi|302641453|gb|EFL71817.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS458]
 gi|302643702|gb|EFL73968.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS457]
 gi|302645855|gb|EFL76083.1| sensor histidine kinase PnpS [Streptococcus pneumoniae BS397]
          Length = 443

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             ++L     S   H++ +P+ +I    E +     +E  ++D+ + +I   S+     +
Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272

Query: 65  KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +          + +      + +  L    Q       +  +VQV      +  S+  
Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A     +GGK+ +  Q        S+   G      E   +I +      
Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L+     ++            +  L 
Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436


>gi|260577096|ref|ZP_05845074.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259020674|gb|EEW23992.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 587

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 66/237 (27%), Gaps = 26/237 (10%)

Query: 1   MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE---- 46
           M K++         S  L AL  + + + H++  P+ A+   L     LL     +    
Sbjct: 344 MQKDLEVAELTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRRRPDEALS 403

Query: 47  --DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRV 100
               +  LI            + R        VD    +     ++E      +    R 
Sbjct: 404 SFQRIDDLIDRMGAITRQLKSYARKGGEAFEPVDLRTCVSSALSMMEPQLKLRVVRITRA 463

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLAR 159
                   +       ++++NL      +        I +   + +    +++ NG    
Sbjct: 464 MPRQPVMVMADRIRLEQVIINLLRNGLDATKGRTSPQIDLLLTAGDTATLTVRDNGPGIT 523

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    + +    +    +   +       +  +   RL     +D   V    L 
Sbjct: 524 DLEN---LFEPFYTTKKAGEGVGLGLAISSGIVTDLGGRLTAHNAEDGGAVFEMQLP 577


>gi|160894156|ref|ZP_02074934.1| hypothetical protein CLOL250_01710 [Clostridium sp. L2-50]
 gi|156864189|gb|EDO57620.1| hypothetical protein CLOL250_01710 [Clostridium sp. L2-50]
          Length = 897

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +       +  L A L   I HD+ +P+ AI  S + L       D+   E     +  
Sbjct: 656 KEEAAVLAQNEQLRANLLRAISHDLRTPLTAISGSADNLLANYKKMDDALREQTFTDIYD 715

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEK 108
            S     +    + +     G V+    +  +++V        +  + +  ++V+   + 
Sbjct: 716 DSMWLINLVENLLAVTRIEGGQVNLTRSIELMDEVVSEALKHINRKSKEHTIRVTSGKDF 775

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I    +     ++++NL   A    P G  + I     +     S+  NG      E+  
Sbjct: 776 ILALIDAKLIVQVIINLVDNAIKYTPVGSVIEIHTDQKEQWVTVSVSDNGPGI-PDEQKP 834

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           +  S  +       +   +   +       +       L 
Sbjct: 835 RIFDMFYSGANKVVDSRRSLGLGLSLCKSIVTAHGGTISVSDNQPNGTAFKFTLP 889


>gi|86609102|ref|YP_477864.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
 gi|86557644|gb|ABD02601.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-2-3B'a(2-13)]
          Length = 1442

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 59/221 (26%), Gaps = 27/221 (12%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-------MSAIIRLKFMRLAFG 72
            + I H+I +PI AI     LL +  ++ +    ++                L F ++   
Sbjct: 821  ATISHEIRTPINAILGMTSLLLDTSLDPQQQDWVQTIRYGGEVLLNLINDILDFSKIESQ 880

Query: 73   YTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWTGEKIDLSRERAKILLNLF 123
                 +    L  + + + D +A   +         V  S     I       +IL NL 
Sbjct: 881  KLELEEIPFSLPQLVEELLDLMAAQAQSKDLELVAWVDPSLPPTLIGDPNRLRQILANLL 940

Query: 124  MVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173
              A    P+G  V           K      ++  G     PEK  ++          + 
Sbjct: 941  SNAIKFTPQGEVVVTVEAGERDPEKQWVNVQVRDTGIGI-PPEKLDRLFKPFSQVDSSIS 999

Query: 174  STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       L       +  E            + 
Sbjct: 1000 RQFGGTGLGLAISQRLCQLMGGAIGVESQPGQGSTFRFRIP 1040


>gi|15903935|ref|NP_359485.1| sensor histidine kinase PnpS [Streptococcus pneumoniae R6]
 gi|116515950|ref|YP_817298.1| sensor histidine kinase PnpS [Streptococcus pneumoniae D39]
 gi|148998123|ref|ZP_01825636.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP11-BS70]
 gi|149006951|ref|ZP_01830632.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP18-BS74]
 gi|149023778|ref|ZP_01836239.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP23-BS72]
 gi|168577114|ref|ZP_02722934.1| histidine kinase PnpS [Streptococcus pneumoniae MLV-016]
 gi|307068696|ref|YP_003877662.1| signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|307128344|ref|YP_003880375.1| histidine kinase PnpS [Streptococcus pneumoniae 670-6B]
 gi|15459587|gb|AAL00696.1| Histidine kinase [Streptococcus pneumoniae R6]
 gi|116076526|gb|ABJ54246.1| sensor histidine kinase PnpS [Streptococcus pneumoniae D39]
 gi|147756133|gb|EDK63176.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP11-BS70]
 gi|147761552|gb|EDK68517.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP18-BS74]
 gi|147929574|gb|EDK80567.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP23-BS72]
 gi|183577278|gb|EDT97806.1| histidine kinase PnpS [Streptococcus pneumoniae MLV-016]
 gi|301795012|emb|CBW37476.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus pneumoniae INV104]
 gi|306410233|gb|ADM85660.1| Signal transduction histidine kinase [Streptococcus pneumoniae
           AP200]
 gi|306485406|gb|ADM92275.1| histidine kinase PnpS [Streptococcus pneumoniae 670-6B]
 gi|332071154|gb|EGI81649.1| his Kinase A domain protein [Streptococcus pneumoniae GA17545]
 gi|332198896|gb|EGJ12977.1| his Kinase A domain protein [Streptococcus pneumoniae GA47901]
          Length = 443

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             ++L     S   H++ +P+ +I    E +     +E  ++D+ + +I   S+     +
Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272

Query: 65  KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +          + +      + +  L    Q       +  +VQV      +  S+  
Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A     +GGK+ +  Q        S+   G      E   +I +      
Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L+     ++            +  L 
Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436


>gi|17228724|ref|NP_485272.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17130576|dbj|BAB73186.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 1749

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 23/237 (9%)

Query: 1    MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
            + + +   L        L +   S   H+  +P+  I +S ELL+          +   +
Sbjct: 1501 LEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKWTEEKQLTHL 1560

Query: 51   QLIRLSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
              I+ +       L  + +               +D +    ++ + I+  +   +   +
Sbjct: 1561 HRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPRPLDVVAYCQNLVEEIQLNLNNQQVNFI 1620

Query: 103  SWTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            S          E+    IL+NL   A    P    V +         +F ++  G     
Sbjct: 1621 SEHQSMSCCMDEKLLGHILINLISNAIKYSPANSNVQVKFYCRDRCAVFEVQDWGIGIPA 1680

Query: 161  PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +             +       +    V      ++  +      +   + +  + 
Sbjct: 1681 EDITHLFESFYRAKNVGNILGTGLGLAIVKKCVDIHQGEISVSSNPEVGTLFTVNIP 1737


>gi|116749638|ref|YP_846325.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698702|gb|ABK17890.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 823

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/229 (9%), Positives = 57/229 (24%), Gaps = 23/229 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLK 65
           L +  L +   + + H++ +P+ +I     LL       +    +      + +    L 
Sbjct: 313 LEADHLRSEFVANMSHELRTPLNSIIGFSGLLMKNRGGNLVATDLSYAEKINRNGKHLLN 372

Query: 66  FMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +      +      + L              ++ +       +  +     GE      
Sbjct: 373 LINDILDLSKIEAGRMELQIGPTRIDVLTKEVVDMLRPQADERNLSLTFETAGEIPMFET 432

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFT 165
           +  K+   L      A     +GG     +  S +     +  +G            +  
Sbjct: 433 DGEKLKRVLINLLGNAIKFTHKGGVKVRLISQSGHRLNIEVNDSGIGIPQDKLETIFQPF 492

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + VD +         +       +    +  +            +  L 
Sbjct: 493 RQVDSSTSREYGGTGLGLTITRSIVEMLRGEISVSSKPGEGSTFTVSLP 541


>gi|94986414|ref|YP_605778.1| periplasmic sensor signal transduction histidine kinase
           [Deinococcus geothermalis DSM 11300]
 gi|94556695|gb|ABF46609.1| periplasmic sensor signal transduction histidine kinase
           [Deinococcus geothermalis DSM 11300]
          Length = 524

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVAL-----LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIR 54
           +A  +   LS ++  +        S   H++ +P+ AI      LL      +   + + 
Sbjct: 276 LAHALNAMLSRLE-ASFEAQRRFTSDASHELRTPVTAISGHASYLLRRTDPTEGQRESLN 334

Query: 55  LSSMSAIIRLK-------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +    +                     +           +     E +        + V 
Sbjct: 335 IIRRESERLTNLIASLLQLARSDSGALVLTRQPILSGLFLAEIARELLPLAQAQGTELVA 394

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++++NL   A  +  R   +     +   E    ++ +G      
Sbjct: 395 QGQDVAFEGDPDRLKQVIINLVGNALKAGARHVTLGSQPAEGGREVRLWVQDDGPGI-PS 453

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ D                 +       +   +  R+  E            L 
Sbjct: 454 EHLARLFDRFYRVEDSRSRDQGGAGLGLSIAKGIVDAHGGRIWLESEVGRGTTAYVQLP 512


>gi|320354148|ref|YP_004195487.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122650|gb|ADW18196.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 900

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 62/245 (25%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +     + +  ++      + + H+I +P+  I     +L    + D   Q + L  
Sbjct: 483 EKELYHAREAAETASIAKSEFLANMSHEIRTPMNGIIGLSNILLREDLPDLQRQQLELIH 542

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQ 101
            SAI  +  +     ++        L      + + +                     V 
Sbjct: 543 RSAIRLMIIINDILDFSKLEAGRFELEQRLFSLRNLLNEVIQPMEPTAQRKNLRLHLIVA 602

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKIN 154
            +     +    +  ++L NL   +     +         + + +   + +  +F +   
Sbjct: 603 PNVPDMLVGDQTKIMQVLTNLIDNSLKFTRKGQITLTVSNQPSPNSFANGDMLLFEVADT 662

Query: 155 GNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G                  D +         +       L      R+  E         
Sbjct: 663 GIGIAPTYYDKVFESFSQADSSHSRRFGGTGLGLSISKGLVELMGGRIWFESELAKGTRF 722

Query: 210 SALLE 214
           S  L 
Sbjct: 723 SFTLP 727


>gi|320160335|ref|YP_004173559.1| sensor protein KdpD [Anaerolinea thermophila UNI-1]
 gi|319994188|dbj|BAJ62959.1| sensor protein KdpD [Anaerolinea thermophila UNI-1]
          Length = 853

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 57/225 (25%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLIRLSSMSAII 62
             L   L + I HD+ +P+ A+  SL  L          +     ++++     +     
Sbjct: 621 EKLQTALLNSISHDLRTPLSAVEGSLSSLLEAETNGLQMDRETRLDLLENATEEAERLNR 680

Query: 63  RLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            +  +                   V  LIG    +               S   E     
Sbjct: 681 LVGNLLDMTRIEAGALRIRRRPCDVQDLIGTALTQFQRRLQDRKVSTHIASDIPEVEMDF 740

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
               ++L  L   A    P G ++ +  +        S+   G      +    F +   
Sbjct: 741 VLIEQVLERLLDNAVKYSPPGSEINVEAKVRDGALYISVADRGEGIPPEDLERIFGKFYR 800

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +       +   +  R+  E   D     +  + 
Sbjct: 801 VQRPDGVSGTGLGLSICKGIVEIHGGRIWAENRPDGGAKFTFTIP 845


>gi|308270674|emb|CBX27285.1| hypothetical protein N47_I07050 [uncultured Desulfobacterium sp.]
          Length = 1252

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 73/245 (29%), Gaps = 32/245 (13%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
             K++   L  S  L A+  L   I HD  + +  I  + EL    + +     + ++ I 
Sbjct: 868  KKSLEQQLRQSQKLEAIGILSGGIAHDFNNLLTTIIGNTELTLVDIPKDDPVRQGIEEIM 927

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------E 107
             +   A    + +           +++ L +    +E  +       +           +
Sbjct: 928  AAGERAASLTRQLLAFSRKQVLQPTVMYLNETALDMEKMLCRMIGEDIELKTILAPDLGQ 987

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSLK 152
                + +  ++++NL + A  ++P GGK+T                         + S+ 
Sbjct: 988  IEADAGQIEQVIMNLVVNARDAMPYGGKITIETENVNIDDGYAHTHVAVIPGPYVMLSIS 1047

Query: 153  INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              G      E    I +    + +      +    V  +  ++   +             
Sbjct: 1048 DTGVGM-PDEIKAHIFEPFFTTKVKGKGTGLGLSTVYGIIKQSNGNIWVYSEPGKGTTFK 1106

Query: 211  ALLEK 215
              L +
Sbjct: 1107 IYLPR 1111


>gi|294506248|ref|YP_003570306.1| Two component system histidine kinase, [Salinibacter ruber M8]
 gi|294342576|emb|CBH23354.1| Two component system histidine kinase, putative [Salinibacter ruber
            M8]
          Length = 1198

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 63/239 (26%), Gaps = 26/239 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQ 51
            +         +  + + L + + H+I +P+ +I    E+         L       +   
Sbjct: 946  LRDAKEEAEEASRMKSALLANMSHEIRTPLTSIIGFAEVVGTEASTLDLPTGSPLPDCAD 1005

Query: 52   LIRLSSMSAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             I       +             A       + +  + ++++V E+     +  ++    
Sbjct: 1006 RIERGGKRLLDTLEGVLNLSKLEAGQMELDAEPVPLISEVQRVAEELQPKAREKEIDLRL 1065

Query: 107  EKIDLSRERAK-----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            E      E  +     I  NL   A       G V +    +    +  ++  G     P
Sbjct: 1066 ETESAWAEADEGGVQIIARNLLSNAIKYTEADGTVWVRSYRADGRAVLEVEDTGIGM-AP 1124

Query: 162  EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    + +             +   +        A E    +  +  +      +  L 
Sbjct: 1125 EAVDDLFEPFRQASEGFSREYEGTGVGLAVTKRAAEEMDGSVDVDTEEGEGSRFTVRLP 1183


>gi|302561592|ref|ZP_07313934.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           griseoflavus Tu4000]
 gi|302479210|gb|EFL42303.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           griseoflavus Tu4000]
          Length = 381

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 51/237 (21%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 137 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 196

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G   Q          R  +      
Sbjct: 197 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQSADRFLLRVQRPL 256

Query: 109 IDLSRERAKILLNLFMVAHASLPRGG-----------KVTISVQDSKNENIFSLKINGNL 157
            DL  +  K+   L  +   ++  G                           ++   G  
Sbjct: 257 PDLWADPDKVDQVLSNLLENAVRHGEGTVTIDVTPSVSPRERENGENAATSVTVSDEGPG 316

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           S      +  Y V  +   +   +               L 
Sbjct: 317 IPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPGGGAEFRFTLP 373


>gi|269793059|ref|YP_003317963.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100694|gb|ACZ19681.1| multi-sensor hybrid histidine kinase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 877

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 63/235 (26%), Gaps = 26/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S   +     S I H+I +P+ A+    E+L +   + E+ + + L   +++
Sbjct: 386 AKERAEASSRAKMA--FVSHISHEIRTPMNAVVGLSEMLLDSCEDPEIREDLELIHQASM 443

Query: 62  IRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW------T 105
              + +                     S+  L      +    A  K ++         +
Sbjct: 444 SLTEILGDILDLAAVEAGKLRLEESSFSMEDLCAPVFSLMGAEAKRKGLEFRGKVEDGAS 503

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           G  +       ++L NL   A    P G              +F +   G      E+  
Sbjct: 504 GHFVGDQVRIRQLLWNLLSNAIKFTPSGSVSARISASEGG-VLFEVSDTGVGI-EEEQLD 561

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D            I    +       L       +            S  L 
Sbjct: 562 RIFDYFERGEELLTRRIPGTGLGLALCKKLVSLMGGAIRVRSRRGEGSCFSIWLP 616


>gi|225570072|ref|ZP_03779097.1| hypothetical protein CLOHYLEM_06168 [Clostridium hylemonae DSM
           15053]
 gi|225161542|gb|EEG74161.1| hypothetical protein CLOHYLEM_06168 [Clostridium hylemonae DSM
           15053]
          Length = 245

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 62/221 (28%), Gaps = 15/221 (6%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           +   L S  +     S I H+I +P+  ++++L+L++    E    +             
Sbjct: 24  LQKLLESQKMT---ISSISHEIRNPLTLVYSTLQLIEAQHPEVSTYKYWDSMRSDVEYMT 80

Query: 65  KFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             +     +             S      +      + +                   + 
Sbjct: 81  ILLEELSAFNNGESLSLSEIDCSSFLRPVVLSFAASLAESSIEFTSKLEPDLPVICGDAV 140

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  +++LNL   A  ++   G +         +   S++ NG      E    I +  V 
Sbjct: 141 KLREVILNLLQNAKDAVNPDGAIYFHAFTEAGKLCISVRDNGCGI-PQEDMEHIFEPFVT 199

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +A  +K  L    +     V +  L 
Sbjct: 200 YKQGGTGLGLAIGRRIASAHKGTLSAVSVPGGPTVFTLSLP 240


>gi|223983581|ref|ZP_03633762.1| hypothetical protein HOLDEFILI_01043 [Holdemania filiformis DSM
           12042]
 gi|223964426|gb|EEF68757.1| hypothetical protein HOLDEFILI_01043 [Holdemania filiformis DSM
           12042]
          Length = 934

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +  L A L   I HD+ +P+ +I  +  +L       +  +  +L +  A 
Sbjct: 683 KEEAQMQVKNEQLRANLLRSISHDLRTPLTSISGNAGILLNSPQSLDSARSRQLIADIAE 742

Query: 62  I-------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                           K            + +  +             +  +      + 
Sbjct: 743 DSAWLINLVENLLSITKIENGTMSLNLQTELMEEVITEALQHISRHRREHHIVHEECPQI 802

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           + +  +     ++++NL   A    P G ++TI       E +  +  +G          
Sbjct: 803 VLVRIDSQLMMQVIINLVNNAIQYTPEGSRITIRSFLEGQELVVEVADDGPGI-PDAMKE 861

Query: 166 QIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    S            +       +   +  RL       H  + S    
Sbjct: 862 RIFDLFYTSRGQIADSRRGMGLGLALCQSIISAHGGRLAVRDNVPHGALFSFRCP 916


>gi|218130180|ref|ZP_03458984.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
 gi|217987684|gb|EEC54012.1| hypothetical protein BACEGG_01768 [Bacteroides eggerthii DSM 20697]
          Length = 867

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 18/227 (7%), Positives = 55/227 (24%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMS 59
               L +  L +   + + H+I +P+ AI    +LL +          + ++ I ++   
Sbjct: 636 RDKALQADKLKSAFLANMSHEIRTPLNAIVGFSDLLKDLEGFSSEEVQQFVETININCTL 695

Query: 60  AIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GE 107
            +  +                   S +    +  +       +     ++  +       
Sbjct: 696 LLALMNDILDLSRIESGTMDFRFSSYNLTFIMQQVYDSQRLSMPQGVELRTDFPEGTGKS 755

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I  S    +++ NL   A     +G  +     +     +  ++  G+           
Sbjct: 756 MITDSVRLKQVVNNLINNAKKFTTKGYILLGYRVEDSGHTVIFVEDTGSGISDENLGHIF 815

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                         +       +       +               +
Sbjct: 816 ERFYKADNFTQGAGLGLSICQTIVERLNGTITVTSKLGKGTHFEVRI 862


>gi|148989901|ref|ZP_01821184.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP6-BS73]
 gi|168494163|ref|ZP_02718306.1| histidine kinase PnpS [Streptococcus pneumoniae CDC3059-06]
 gi|182685019|ref|YP_001836766.1| sensor histidine kinase PnpS [Streptococcus pneumoniae CGSP14]
 gi|221232793|ref|YP_002511947.1| alkaline phosphatase synthesis sensor protein [Streptococcus
           pneumoniae ATCC 700669]
 gi|303256047|ref|ZP_07342069.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus pneumoniae BS455]
 gi|147924686|gb|EDK75771.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP6-BS73]
 gi|182630353|gb|ACB91301.1| sensor histidine kinase PnpS [Streptococcus pneumoniae CGSP14]
 gi|183575923|gb|EDT96451.1| histidine kinase PnpS [Streptococcus pneumoniae CDC3059-06]
 gi|220675255|emb|CAR69847.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus pneumoniae ATCC 700669]
 gi|301802755|emb|CBW35528.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus pneumoniae INV200]
 gi|302596963|gb|EFL64087.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus pneumoniae BS455]
 gi|332198504|gb|EGJ12587.1| his Kinase A domain protein [Streptococcus pneumoniae GA41317]
          Length = 443

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             ++L     S   H++ +P+ +I    E +     +E  ++D+ + +I   S+     +
Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272

Query: 65  KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +          + +      + +  L    Q       +  +VQV      +  S+  
Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A     +GGK+ +  Q        S+   G      E   +I +      
Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L+     ++            +  L 
Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436


>gi|149002912|ref|ZP_01827823.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP14-BS69]
 gi|237650563|ref|ZP_04524815.1| histidine kinase PnpS [Streptococcus pneumoniae CCRI 1974]
 gi|237821703|ref|ZP_04597548.1| histidine kinase PnpS [Streptococcus pneumoniae CCRI 1974M2]
 gi|147758915|gb|EDK65910.1| sensor histidine kinase PnpS [Streptococcus pneumoniae SP14-BS69]
          Length = 443

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             ++L     S   H++ +P+ +I    E +     +E  ++D+ + +I   S+     +
Sbjct: 215 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 272

Query: 65  KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +          + +      + +  L    Q       +  +VQV      +  S+  
Sbjct: 273 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 332

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A     +GGK+ +  Q        S+   G      E   +I +      
Sbjct: 333 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 391

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L+     ++            +  L 
Sbjct: 392 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 436


>gi|320155892|ref|YP_004188271.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931204|gb|ADV86068.1| sensor histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 768

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 58/243 (23%), Gaps = 34/243 (13%)

Query: 4   NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                L +  + A           + + H+I +P+  +  + ++L +  + +E  + ++ 
Sbjct: 297 EKTVYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLNEEQRKHLKT 356

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------- 105
              S    +  +     Y+      +   +     +  I     V  +            
Sbjct: 357 LYDSGDHMMTLLNEILDYSKIEQGHMEFDNNPFPFDSIIGSVNSVYYTLCAEKGLQFKVY 416

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGN 156
                            ++L NL   A     R           ++  N     +K  G 
Sbjct: 417 STVPTGRWYCADKARLRQVLFNLLNNAVKFTARGLVEVYFEEHTREKANYLSIKVKDTGI 476

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                    +I                   +    V  +A +    +            +
Sbjct: 477 GIPES-AQKRIFRPFEQAESSTTRRFGGTGLGLAIVKQIAEQMGGSVAVSSQVGLGTCFT 535

Query: 211 ALL 213
             L
Sbjct: 536 VEL 538


>gi|311030764|ref|ZP_07708854.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp.
           m3-13]
          Length = 594

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 25/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPISMLQGYSEAIVDDIAGTDEEKKELASVIYD 410

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSW 104
                       L   R+  G+         +    + I            +  + +V  
Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHISLNYENANIVAFVEKITRKFQGLAKEKSIVLQSRVEG 470

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
            G          +++ NL   A       G +TI  +   N     +K +G+     +  
Sbjct: 471 DGVIQMDVDRMEQVMTNLVDNAIRHTADDGTITIHAKLINNGVKIDVKDSGHGIPEEDLP 530

Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +    V  +   ++  +     ++     S  + 
Sbjct: 531 FVFERFYKADKARTRGRAGTGLGLAIVKNIIEAHRGTISVHSKENEGTTFSMYIP 585


>gi|289772133|ref|ZP_06531511.1| two component sensor kinase [Streptomyces lividans TK24]
 gi|289702332|gb|EFD69761.1| two component sensor kinase [Streptomyces lividans TK24]
          Length = 454

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 60/204 (29%), Gaps = 13/204 (6%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75
           H++ +PI  +   LEL+ D+    +E ++L+          ++ +       R  F    
Sbjct: 247 HELRTPITIVRGHLELMGDDPAEREETVRLVTDELDRMSRIVEDLLLLAKAERPDFVTPE 306

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            V       D+          +  +      E     +   + ++ L   A      G +
Sbjct: 307 PVQLAELTADVFVKARTLGEREWVLDGVADREAHLDPQRITQAMVQLAQNAVQHTTAGQR 366

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190
           V I  +   +     +  +G   +  +    F +   G     +      +    V  +A
Sbjct: 367 VRIGSRADGSRIELYVADSGPGVQPQDAEVIFERFRRGTARRGVRGTGAGLGLSIVRAIA 426

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +  R+               LE
Sbjct: 427 EGHGGRVDLRTTAGGGATFVLTLE 450


>gi|283852466|ref|ZP_06369735.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572204|gb|EFC20195.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 482

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
            + +   L     L  +  + + I H+I +P+G I ++ ELL       +    +L+   
Sbjct: 248 REQLERELQQQEKLAGMGRMVAGIAHEIRNPLGIIRSTAELLLKRNKETDGVNARLLSAI 307

Query: 57  SMSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +    K +     Y          VD  + L      +E                 +
Sbjct: 308 FDESKRLSKTVGDFLDYARPKAPKQEVVDLAVTLDQALVFLEAKCEELGVAVTKDYSAGL 367

Query: 110 DLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLARF 160
           ++  ++  +   ++ V   +L          R   + ++          ++  +G     
Sbjct: 368 NVRGDKDLLYRAVYNVLSNALDSLAEDREKARPAAIAVAATADATAVTLAITDSGPG-FC 426

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   +++D    +      +    V  +   +   L  E   D    ++    
Sbjct: 427 PENKDRLLDPFFTTKDAGTGLGLAIVRNIVESHNAALSLENAPDAGARVTMTFP 480


>gi|262402142|ref|ZP_06078703.1| signal transduction histidine kinase [Vibrio sp. RC586]
 gi|262350924|gb|EEZ00057.1| signal transduction histidine kinase [Vibrio sp. RC586]
          Length = 569

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 66/246 (26%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + + +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 185 LQRLVEIRTRELKLAQKLAEQASQSKSNFLAMMSHELRTPLNAVLGLIDILRNDSTSYQV 244

Query: 50  MQLIRLS---------------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++                          +   +           +   +   +  I
Sbjct: 245 ELLEQMESSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLEQSLVYHRQIAQDKGI 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
             +  +    T E    S    +IL N+   A     + G V + +  +++   F ++  
Sbjct: 305 RFNIIINKDQTLEYYTDSARLTQILFNIVGNAVKFTKK-GHVDVQLNYAEDGVSFRIQDT 363

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+          +        +       L    +  +  +   +   +
Sbjct: 364 GIGIERKRI-QQLFTPFVQADNSITRHYGGTGLGLAITKHLIELMQGTIHVDSEINVGTI 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTLHIP 428


>gi|239996811|ref|ZP_04717335.1| PAS signal transduction protein [Alteromonas macleodii ATCC 27126]
          Length = 773

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K      S+    +   + + H+I +P+ AI     L  E    ++  Q +     S+
Sbjct: 257 LQKAYDEAQSANKAKSDFLATMSHEIRTPMNAIIGLTHLALESTDNEQRQQYLEKVQRSS 316

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLG----------------DIEQVIEDFIAVDKRVQVSW 104
              L  M     ++      I +                    +  +  + +   ++   
Sbjct: 317 TALLDLMNSILDFSKVEADKIEIVDEPFTLTKTIDKLAQVFQVKAQQKQLQLLFDIRCHT 376

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +    S +  ++LLNL   A       G + ++V+  +N+  FS+   G         
Sbjct: 377 NLQCRGDSEKIYQVLLNLLSNAIKFTAS-GHIILTVEKRENQLAFSVSDTGMGI-SEHVK 434

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +++          +        +       L       L  E   D     S  L 
Sbjct: 435 SKLFKAFVQADASISREYGGTGLGLAICKRLVELMGGDLTLESEVDKGSCFSFALP 490


>gi|218128652|ref|ZP_03457456.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
 gi|217989107|gb|EEC55422.1| hypothetical protein BACEGG_00223 [Bacteroides eggerthii DSM 20697]
          Length = 983

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 61/230 (26%), Gaps = 21/230 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN       +    L  + + H+I +P+ AI     +L     E+E  + I +   +  
Sbjct: 612 AKNRAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSILATAEEEEEKSEYINIIENNNQ 669

Query: 62  IRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           + L+ +                        V            I       + +  S   
Sbjct: 670 LLLQLISDVLDIAKIEASSLDFNYSSLDLNVLMNELESTALMRITSPDVCLEMIPDSDNC 729

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I      ++I++NL   A     +G          +    F +   G      EK  +
Sbjct: 730 WVITERNRLSQIIINLLNNAIKFTQKGKITFGYKLQKEK-IYFYVTDTGCGI-PAEKQDK 787

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  +   +      +       +       +  +    +       L 
Sbjct: 788 IFERFIKLNNFAQGTGLGLSICKSIVDAMGGEIGVDSKVGNGSTFWFTLP 837


>gi|297198450|ref|ZP_06915847.1| phosphate regulon sensor kinase PhoR [Streptomyces sviceus ATCC
           29083]
 gi|197716140|gb|EDY60174.1| phosphate regulon sensor kinase PhoR [Streptomyces sviceus ATCC
           29083]
          Length = 372

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 51/234 (21%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 131 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 190

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G   Q          R  +      
Sbjct: 191 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGLAADRFLLRLEQPL 250

Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             L  +     ++L NL   A                   +D       ++   G     
Sbjct: 251 PMLWADPDKIDQVLSNLLENAVRHGEGTVTIAITPTASPREDEDTGTSVTVSDEGPGIPE 310

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        S      +  Y V  +   +   +               L 
Sbjct: 311 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRGPQGGAEFRFTLP 364


>gi|4530446|gb|AAD22037.1| histidine kinase PnpS [Streptococcus pneumoniae]
          Length = 422

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 72/225 (32%), Gaps = 23/225 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
             ++L     S   H++ +P+ +I    E +     +E  ++D+ + +I   S+     +
Sbjct: 194 EKLNLA--FVSNASHELRTPVTSIKGFAETIKGMSAEEEALKDDFLDIIYKESLRLEHIV 251

Query: 65  KFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           + +          + +      + +  L    Q       +  +VQV      +  S+  
Sbjct: 252 EHLLTLSKAQQMPIQWTTLSLAEFVQDLTQSLQPQLKKKDLQLKVQVPDDVTLVSDSQLL 311

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           ++ILLNL   A     +GGK+ +  Q        S+   G      E   +I +      
Sbjct: 312 SQILLNLLSNAIRYTEQGGKIEVKTQKVNEGIKISVSDTGIGISQLE-QDRIFERFYRVN 370

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L+     ++            +  L 
Sbjct: 371 KGRSRQTGGTGLGLAIVKELSQLLGGQVTVTSQLGRGSCFTIFLP 415


>gi|301385593|ref|ZP_07234011.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato
           Max13]
 gi|302058823|ref|ZP_07250364.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato
           K40]
 gi|302132148|ref|ZP_07258138.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|331014863|gb|EGH94919.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 436

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGDLVRDVVAPFNNAEGSIRLCLEPIPPFPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426


>gi|256393336|ref|YP_003114900.1| histidine kinase [Catenulispora acidiphila DSM 44928]
 gi|256359562|gb|ACU73059.1| histidine kinase [Catenulispora acidiphila DSM 44928]
          Length = 592

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 62/229 (27%), Gaps = 20/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVM 50
                + +      + + I H++ SP+  I   LE+  +                   + 
Sbjct: 363 ERREQMDAQRKA--MVADIAHELRSPLTNIRGWLEVTRDGLVEPTPDLITSLHDEAVVLQ 420

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           ++I      A      +R+      ++D L  +    +     + +   V      +   
Sbjct: 421 RVIDDLQDLASADAGTLRVHPQPIAALDLLQQVALAHRAQAADLGITVEVHAEPGLDVYA 480

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                 ++L NL   A      G  VT++ + + +    S +  G      +    F + 
Sbjct: 481 DPERIRQVLGNLVSNAVRHSASGAHVTLTARPTADGVELSAQDTGCGIAQADLPYIFDRF 540

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       L   +   +  E        ++  L 
Sbjct: 541 WRSEKSRNRGTGGSGLGLAIARHLVLAHGGTITVESFVGVGTTMTVRLP 589


>gi|153806976|ref|ZP_01959644.1| hypothetical protein BACCAC_01252 [Bacteroides caccae ATCC 43185]
 gi|149130096|gb|EDM21306.1| hypothetical protein BACCAC_01252 [Bacteroides caccae ATCC 43185]
          Length = 1344

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 66/213 (30%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
             I H+  +P+  I   +E+L ++ +     + ++++ + +     +  + +       G 
Sbjct: 826  NISHEFRTPLTLILGQIEVLMQMDLGTTIYNRILRIYKNAWHMRNLISELLDFRKQEQGY 885

Query: 77   VDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---V 125
            +   +   +             E     +   +     E I +  +  ++   +F     
Sbjct: 886  LKLKVEEQNLVAFTRQIYMCFYEYAQKKEITYRFDNVEETISVWFDSKQLQKVIFNLLSN 945

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID-SHDI 181
            A    P  G + + V+   ++ I S+   G           F +    +  S+      I
Sbjct: 946  AFKYTPNKGSIRVEVRMLASQAIVSVCDTGVGIPEEHISKIFERFYQTDNSSSFTLGTGI 1005

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   + + +  ++  E         +  L 
Sbjct: 1006 GLALAKGIMNMHHGKIDVESTVGKGTKFTLSLP 1038


>gi|108763723|ref|YP_629389.1| sensor histidine kinase FrgB [Myxococcus xanthus DK 1622]
 gi|6578850|gb|AAF18102.1|AF204400_2 FrgB [Myxococcus xanthus]
 gi|108467603|gb|ABF92788.1| sensor histidine kinase FrgB [Myxococcus xanthus DK 1622]
          Length = 510

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 65/224 (29%), Gaps = 14/224 (6%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLS 56
           +    L  +  +    +++ HD+ +PI A+  + + L E          + E + L+   
Sbjct: 273 SRSERLERLATLGRFSAQMAHDLKNPIAAMKGAAQYLKEEHARGRSWDGQGEFLDLLLEQ 332

Query: 57  SMSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                      + +         VD    +  +  +          +           + 
Sbjct: 333 VERLDRVVDTYQRLARVEPLPKPVDLRRLVEGVLSLQVFASPGKVVIIRELAAGLPPCAG 392

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           ++  +   L      A  ++P GG +T+       +    ++  G       +  +  D 
Sbjct: 393 DQDLLANALENLVRNACEAMPGGGTLTVRALRDGADVAMEVEDTGEGMDARTR-ERAFDD 451

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +   +V  +   +   +L    +    V+   L 
Sbjct: 452 FFTTKASGSGLGLAFVRRVVEAHGGEVLLTSREGRGTVVRMRLP 495


>gi|47569127|ref|ZP_00239815.1| sensor histidine kinase, putative [Bacillus cereus G9241]
 gi|47554198|gb|EAL12561.1| sensor histidine kinase, putative [Bacillus cereus G9241]
          Length = 423

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKISIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|297625139|ref|YP_003706573.1| histidine kinase [Truepera radiovictrix DSM 17093]
 gi|297166319|gb|ADI16030.1| histidine kinase [Truepera radiovictrix DSM 17093]
          Length = 379

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 20/216 (9%), Positives = 55/216 (25%), Gaps = 22/216 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + H++ +P+ ++    ++L +         +    + I  S +  +  +  +        
Sbjct: 148 LSHELRTPLTSVIGYAQVLGDEIIGPLNDKQRAYAETIYTSGLQLMRLIDDLLDLSRLEA 207

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                        + L               +   +Q              A++L  L  
Sbjct: 208 GDVALQRRPVAVAELLRAGVAGVGAEARAKGLSVTLQPPPEAALYGDPARLAQVLGALLS 267

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSH 179
            A    P GG+V +S +  ++E +  ++ +G                             
Sbjct: 268 NAVKFTPLGGRVWVSAELRESEVVLMVRDDGIGIAPEHHEGVFSPFFLVDASSARQHRGA 327

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +       +   +  R+               L +
Sbjct: 328 GLGLALARRIVELHGGRIWVASELGRGSTFYVALPR 363


>gi|225575609|ref|ZP_03784219.1| hypothetical protein RUMHYD_03701 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037162|gb|EEG47408.1| hypothetical protein RUMHYD_03701 [Blautia hydrogenotrophica DSM
           10507]
          Length = 662

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 23/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA----- 60
              L    L   L   I HD+ +P+ +I  + ++L +        +  R+          
Sbjct: 427 ALRLQQEQLRGNLLRAISHDLRTPLTSISGNADMLMKSYQMMADSERTRIFHDIYEDAVW 486

Query: 61  -----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                                      V+ ++                K  Q        
Sbjct: 487 LINLVENLLSVTRIENGTMDIVLQPEMVEDVLDASMKHLNRHVKNHKLKVSQADDMLMAK 546

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             ++   ++L NL   A    P G ++ I+V + +++ +F +  NG+     ++  +I  
Sbjct: 547 MDAKLIIQVLTNLVDNAFKHTPEGSEIEINVYEKRHKVVFEVADNGDGV-PEDQKEKIFT 605

Query: 170 GNVE---STIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +T D      +       +   +  R+  E    H  V    +E
Sbjct: 606 MFYSGDHTTSDGRRCMGMGLTLCKSIIEAHGGRIWVEDNHPHGAVFRFEIE 656


>gi|221195327|ref|ZP_03568383.1| integral membrane sensor signal transduction histidine kinase
           [Atopobium rimae ATCC 49626]
 gi|221185230|gb|EEE17621.1| integral membrane sensor signal transduction histidine kinase
           [Atopobium rimae ATCC 49626]
          Length = 367

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 65/226 (28%), Gaps = 21/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
             + L   L S + H++ +P+ AI  ++E + +     + E ++ +   +      +  M
Sbjct: 140 KDLKLEHRLTSDVAHELRTPLMAILATVEAMQDGVLPADQERLENVASEARRLSRLVDAM 199

Query: 68  RL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------SWTGEKIDLSR 113
                             D +  +  + +  E      K                   + 
Sbjct: 200 LHLSRLENGSTSIRPVKNDLIALVQSLVKSQEPLFRERKICLQFINKTGRDQCFVKVDAD 259

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDG 170
              + ++NL   A       G V+++V++S+ + + S+   G      +      +    
Sbjct: 260 MIREAIVNLLSNAMRYTDVNGLVSVTVEESRGDVVISVSDTGIGIAKEDIPQTFSRFWRS 319

Query: 171 NVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +       +   +   +  E         S  + 
Sbjct: 320 DSSRERASGGLGVGLSITKEILDRHNGTISIESELGRGTTFSLHIP 365


>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
 gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
            2638]
          Length = 1670

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 54/244 (22%), Gaps = 33/244 (13%)

Query: 2    AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
             + +   L+   L A           + + H+I +P+ +I     L+    ++    + +
Sbjct: 920  RRRVEQELNRARLAAEAATRAKSEFLANMSHEIRTPMNSIIGFGHLMQSADLDSAQREYL 979

Query: 54   RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------------- 99
                 SA   L  +     ++        L  +E  ++  +                   
Sbjct: 980  NKMMSSADSLLSIIGDILDFSKIEAGKFVLEAVEFQLDHVLEKICNMVSVKAESKGIDFI 1039

Query: 100  --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
              V                ++L NL   A     RG              +    F ++ 
Sbjct: 1040 LSVGPDVPLFLRGDPLRLEQVLTNLVNNAVKFTDRGEVNLIVTCEENCTGEASIKFIVRD 1099

Query: 154  NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            +G      E                       +       L       +  E        
Sbjct: 1100 SGIGLSSEEVSVLFNSFTQADASTTRKYGGTGLGLAIARSLVELMGGTVSVESHPGEGSS 1159

Query: 209  LSAL 212
                
Sbjct: 1160 FYFT 1163


>gi|83951998|ref|ZP_00960730.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           nubinhibens ISM]
 gi|83837004|gb|EAP76301.1| phosphate regulon sensor histidine kinase, putative [Roseovarius
           nubinhibens ISM]
          Length = 347

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 16/227 (7%), Positives = 56/227 (24%), Gaps = 29/227 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ A+   +E L      +    D  +  +   +      ++ +     
Sbjct: 121 FVANVSHELRTPLTAMMGFIETLQGPARGDTAASDRFLATMYSEANRMERLVRDLLALSR 180

Query: 73  YTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                                    +       +  + +       +L  +  ++   + 
Sbjct: 181 VESEERVRPNQTVDLAGLVRSVAHTLRPLLENSEVTLDLELPQSDTELPGDADQLRQVVT 240

Query: 124 MVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD- 169
            +   +                        ++  + S++  G        P    +    
Sbjct: 241 NLIENAVKYGGKGKTVTVTLSHAENDPMLRRDALLLSVRDEGPGISEIHIPRLTERFYRV 300

Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    +    +    V  +   ++ RL  E       V   +L +
Sbjct: 301 DSHRSREMGGTGLGLAIVKHIVSRHRGRLRIESELGQGSVFRVILPR 347


>gi|310819148|ref|YP_003951506.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392220|gb|ADO69679.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 488

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 17/226 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSS 57
           M + +      + L   + + + H++ +PIG I     LL E      + +    +    
Sbjct: 259 MREALESRDRQLKL---MLAGVAHEVRNPIGGIELFSGLLAEDVRAGSLSEAGGHVTRIQ 315

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDL 111
                  + +     +           +   ++ D           K V +        L
Sbjct: 316 REVAYLQRIVEDFLAFAREQPLARAPVEAPTLLSDACELLAGEAEAKGVALEVDAVPTRL 375

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             + + +   L      A  + P GG+V ++ + +       ++ +G     PE   +I 
Sbjct: 376 EADGSLLTAALVNLVKNAIQASPSGGRVQVTGRPADAVYAIQVRDSGPGVPPPE-TERIF 434

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +   +   L       +  V +  L 
Sbjct: 435 EPFFTTREKGTGLGLPLARKIIRAHGGELSLSSAPGN-TVFTVTLP 479


>gi|222150886|ref|YP_002560039.1| hypothetical protein MCCL_0636 [Macrococcus caseolyticus JCSC5402]
 gi|222120008|dbj|BAH17343.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 487

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 71/223 (31%), Gaps = 14/223 (6%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQLIR 54
              N    +++ LL +   H+I +P+ +I   +ELL+                  ++ I 
Sbjct: 263 EDINTQRKEIIGLLAANTAHEIKNPLTSIKGFVELLELEYDPVHNNQKFHIVKSELERIN 322

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           L     ++  K   +      + D +  + +          +    Q +     I++S++
Sbjct: 323 LIVNQFLLLGKPTTVDVERVDARDIIRDILNFLDYDLAIHNIRVVKQFTDEPTLINVSKD 382

Query: 115 RA-KILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +  ++L+N+   A  ++         I+V+++    +     NG      +   ++ +  
Sbjct: 383 QFKQVLINVIQNAKDAMASREPAVLKITVENTNGYTVMRFIDNGEGM-DTDVQQELFNPF 441

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +       +   +   +                 
Sbjct: 442 FTTKLHGTGLGLPVTKSIVDAHHGLIEVVSSKKKGTTFIISFP 484


>gi|219852263|ref|YP_002466695.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219546522|gb|ACL16972.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 781

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 23/231 (9%)

Query: 4   NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
           +    +S+ +L   A + S   HD+ +P+ +I +  +LLD           D+ ++ I  
Sbjct: 543 SERLQVSNEELQRFAYIAS---HDLQAPLRSIVSFSQLLDRRYRGKFDKDADDYIRFIVD 599

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             +     +K + L       V          +    I  +    + +   V V      
Sbjct: 600 GGVRMQNLIKDLLLVSRIETQVQSFAPTDARTVVADTIRSLETLILEIGAVVTVDPLPIV 659

Query: 109 IDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
           +    +  ++  NL   A           V +S         F+++ NG       F + 
Sbjct: 660 MADPPQLEQVFTNLIGNAIKYRRPEVPVVVWVSAVRQGGWWEFAVRDNGIGIEPEYFDQI 719

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F        +   +   I    V  +   +  ++  E       +    L 
Sbjct: 720 FEMFSRLQTKDEYEGTGIGLAIVRKIVARHGGKIWVESTPGKGSIFHFTLP 770


>gi|307153867|ref|YP_003889251.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984095|gb|ADN15976.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1486

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 27/239 (11%)

Query: 2    AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
             +     L  +  L     + + H++ +P+ AI    E L +         + + +++I 
Sbjct: 1099 KQQKNAELDRATRLKDEFLANMSHELRTPLNAILGMTEGLQDEIFGQINERQRKSLKIIE 1158

Query: 55   LSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGE 107
             +    +      + ++   +G ++      +I  + +         AV KR+Q+ +   
Sbjct: 1159 QAGNHLLELINDILDVSKIESGQLELHCTSTEIIPLCQSSLAFVKQQAVKKRIQLDFNIS 1218

Query: 108  KIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFP 161
               L      R   ++++NL   A    P GGKV + V         F++K  G      
Sbjct: 1219 SNILMLTLDERRIRQVIINLLNNAVKFTPEGGKVGLEVVQIGENTVRFAVKDTGIGI-AA 1277

Query: 162  EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++    +              +    V  L   +   +            S  L 
Sbjct: 1278 ENIPKLFQPFMQIDSALNRQYTGTGLGLALVKRLVDLHGGEVSVTSELGVGSCFSVDLP 1336


>gi|145589847|ref|YP_001156444.1| osmosensitive K+ channel signal transduction histidine kinase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145048253|gb|ABP34880.1| osmosensitive K+ channel signal transduction histidine kinase
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 897

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 79/233 (33%), Gaps = 19/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55
           A++    + S  L   L S I HD+ +P+ A+    + L+ +       Q      L   
Sbjct: 654 AQSSTVQIESERLRNSLLSAISHDLRTPLTALVGLTDALEMLDAPLTSEQKEIAVLLREK 713

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKI 109
           +   +      + +A   +G+V        IE+ I   I         + + V+   +  
Sbjct: 714 ALKMSSQVSNLLDMARLQSGAVQLNKQWFLIEEAIGAAIKSVESASEGRHITVTLPPDLP 773

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARF---PE 162
            L+ +     ++ +NL   A+   P+   V+I     S       ++ +G         +
Sbjct: 774 LLNFDAVLIERVFINLLENAYKYTPKNSSVSIGASVSSPQSVEIWVQDDGPGLPKGKEED 833

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +   GN E  I    +       +   +  ++  + +       +  L +
Sbjct: 834 IFRKFERGNKEGAISGVGLGLTICRAIIEAHGGKITGKTMAGGGARFTFSLPR 886


>gi|115375338|ref|ZP_01462601.1| developmental histidine kinase sensor [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367622|gb|EAU66594.1| developmental histidine kinase sensor [Stigmatella aurantiaca
           DW4/3-1]
          Length = 488

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 66/226 (29%), Gaps = 17/226 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSS 57
           M + +      + L   + + + H++ +PIG I     LL E      + +    +    
Sbjct: 259 MREALESRDRQLKL---MLAGVAHEVRNPIGGIELFSGLLAEDVRAGSLSEAGGHVTRIQ 315

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDL 111
                  + +     +           +   ++ D           K V +        L
Sbjct: 316 REVAYLQRIVEDFLAFAREQPLARAPVEAPTLLSDACELLAGEAEAKGVALEVDAVPTRL 375

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             + + +   L      A  + P GG+V ++ + +       ++ +G     PE   +I 
Sbjct: 376 EADGSLLTAALVNLVKNAIQASPSGGRVQVTGRPADAVYAIQVRDSGPGVPPPE-TERIF 434

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +       +   +   L       +  V +  L 
Sbjct: 435 EPFFTTREKGTGLGLPLARKIIRAHGGELSLSSAPGN-TVFTVTLP 479


>gi|83717305|ref|YP_438343.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
 gi|83651130|gb|ABC35194.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 952

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           M K     L    + +           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 450 MRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSER 509

Query: 53  IRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++    +   L                        D    L +I               
Sbjct: 510 LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQL 569

Query: 102 VSW-----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
           +S                  +IL NL   A     RG       Q       +     + 
Sbjct: 570 LSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQGDSAIEIWVN 629

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       LA      +  + + D   
Sbjct: 630 DTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGT 689

Query: 208 VLSALLE 214
            ++ +L 
Sbjct: 690 TVTVVLP 696


>gi|298242637|ref|ZP_06966444.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555691|gb|EFH89555.1| GAF sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 557

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 26/238 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57
           K     L   + L +   + + H++ +P+ +I +   LL E      +  E  + I+   
Sbjct: 301 KEKNAALEQANHLKSQFLANVTHELRTPLHSIISYGALLLEGYVEGELSSEQEEHIQFMV 360

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWT 105
             A      +      +      I +                Q+    +  D  + +   
Sbjct: 361 RRAEDLSHLVDDMLDLSKIEADRIEMKPEALELSVSLSEVVNQLKPMALNKDLYLNLECD 420

Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFP 161
            +   +  +     +I+LNL   A     +GG         +  + + S+   G      
Sbjct: 421 PQVPKVLADSHRLRQIVLNLVSNALKFTEKGGVTIHCQHMPERAQVLISVHDTGIGISPA 480

Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  +  DG+         +       L       +  E I       +  L 
Sbjct: 481 ALGYIFEAFRQADGSTTRRFGGTGLGLTIARKLIELQGGEIAVESIPGRGSTFAFTLP 538


>gi|284035316|ref|YP_003385246.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814609|gb|ADB36447.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 746

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
           N    L+  +L A     + HD+ +P+ +I    E+L E            + Q +  S+
Sbjct: 514 NQRLQLAYDELDAF-SYTVSHDLRTPLSSIRCYAEILLEEYGEDFTPDAQALFQKVIDST 572

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKID 110
                 ++ +        +      +   + +                R+++  T   + 
Sbjct: 573 ERMRRLIRHILYYSRMGRTELDTQTINMKQLLEGIREEILVTEKDRSLRIEIGDTPPIVA 632

Query: 111 LSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                 ++  NL   A         G V +    +  E I+S++ NG      +    F 
Sbjct: 633 DPTMALQLFTNLLSNAAKYTQLAHEGIVRVKGHQTDGEVIYSVEDNGIGFDMKQAGKMFD 692

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +   +    V  + + ++ ++      +   V      
Sbjct: 693 LFKRLENARNFEGSGVGLAIVKRIVNRHQGKIWFHSEPNQGTVFHVSFP 741


>gi|229132236|ref|ZP_04261092.1| hypothetical protein bcere0014_11740 [Bacillus cereus BDRD-ST196]
 gi|228651174|gb|EEL07153.1| hypothetical protein bcere0014_11740 [Bacillus cereus BDRD-ST196]
          Length = 354

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ A    L+LL      ++  +L          
Sbjct: 127 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDACSEKERKLYIDIAINGIE 186

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++                 + L  L  I  +          ++ S +     
Sbjct: 187 QANHVLTDYLTFAKPSIEKEQKLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 246

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+F     ++P GG + +++          +K  G      E+  ++   
Sbjct: 247 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGM-DQEQIKRLGSP 305

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 306 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIMSEKGTGTTFLLTFP 349


>gi|253702516|ref|YP_003023705.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251777366|gb|ACT19947.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 342

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 54/217 (24%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             + + HD+ SP+  I   ++ L       +  +   + ++ + S     +    +    
Sbjct: 118 FVAMMTHDLKSPLTVIMGYIQALLGEKAKIDPSLHLFLGEMDKSSVKMLSMIDDVLDAYR 177

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----------KILL 120
              G +       DI  ++E      +R              +             ++  
Sbjct: 178 LEAGLLQIDRRRCDIHPLLEGCSRDGEREAAVHGSCFQSELCDDIPPLELDAKQISRVFA 237

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STID 177
           NL   A    PR G +T S +         +   G      E                  
Sbjct: 238 NLIGNAVKFTPRRGTITFSSEVRDGFLRVQVADTGIGIPPEELPRIFNQYFRAQSAHGFK 297

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +   +  E         S LL 
Sbjct: 298 GTGLGLTISKAIVEAHGGSIGVESTAGKGSRFSVLLP 334


>gi|158521367|ref|YP_001529237.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510193|gb|ABW67160.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 591

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 68/242 (28%), Gaps = 30/242 (12%)

Query: 2   AKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVG-IEDEVMQLI 53
            + +    + +  L ++  L + I H+I +P+  +      + +LLDE    E+  ++ +
Sbjct: 344 TQTLNQQVIETGKLASVGELAAGIAHEINNPVAIMVEEAGWIGDLLDEEEFSENANLEEM 403

Query: 54  RL-----------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           R                    L F R        V     + +I Q+        K    
Sbjct: 404 RRAITQIGTQGRRCKEITHKLLSFARKTDSTIKDVQLNELISEIVQLSGQMAKSSKITIT 463

Query: 103 SWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKIN 154
           +     +        E  +++LNL   A  ++ + G             K+  +  ++  
Sbjct: 464 TDLTPDLPYVTLSPSEMQQVMLNLINNAMDAMEKTGGAIHISTKMSKLEKDHIVIIVEDT 523

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G           I +    +        +       +  +   ++               
Sbjct: 524 GPGIPEANLPF-IFNPFFTTKPVGKGTGLGLSICYGIVEKMGGKIDVTSKVGEGTRFRVW 582

Query: 213 LE 214
           + 
Sbjct: 583 IP 584


>gi|310824337|ref|YP_003956695.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397409|gb|ADO74868.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1420

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            AK      +         + + H++ +P+  +    +LL    ++D  ++    +   + 
Sbjct: 1017 AKEEAERANRAK--DQFLATLSHELRTPLSTMLMQAQLLRRGTMDDAKIKRASEAIERST 1074

Query: 62   IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------- 110
                 +         + +     + + V    +       VS   E+             
Sbjct: 1075 KMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSILFETTLDESL 1134

Query: 111  -----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                       +I+ NL   A      G +V++ ++  +      +   G      E   
Sbjct: 1135 GPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERMEGSARLQVSDRGAGI-EAEALQ 1193

Query: 166  QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
            +I D  +              +    V  L   +   +  E        + + +L 
Sbjct: 1194 RIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAIFTVILP 1249


>gi|299538438|ref|ZP_07051721.1| integral membrane sensor signal transduction histidine kinase
           [Lysinibacillus fusiformis ZC1]
 gi|298726025|gb|EFI66617.1| integral membrane sensor signal transduction histidine kinase
           [Lysinibacillus fusiformis ZC1]
          Length = 479

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 57/222 (25%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF- 71
           L S I H++ +P+  I   L+ +      +       +Q+++ ++      +  + +   
Sbjct: 256 LISNISHEVRTPLTTIKAYLDAISEGICRDEDSLMAYIQIMQSNTDKMSRLVDDLFIHTL 315

Query: 72  ----------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILL 120
                         S D L  +    Q       +            I +  +R  +++ 
Sbjct: 316 KELGHIPIHLKEQYSQDVLTNILKPIQYYVQTANIHFIRPTRIPNVLILVDADRLEQVIS 375

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES------ 174
           NL   A         +TI+           +   GN     +                  
Sbjct: 376 NLITNALKHSSHEDTITITTYIENQSLYIQVIDTGNGMLPEDMPFIFERYFRGRQPGSES 435

Query: 175 --TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   +       +   +   +      +     + +L 
Sbjct: 436 VIKNEGAGLGLSICQHIMEAHHGSISFHSKPNEGTTFTLILP 477


>gi|322421925|ref|YP_004201148.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320128312|gb|ADW15872.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 951

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +    ++    +   + + H+I +P+  +    ELL    ++++  + +     S 
Sbjct: 268 LQRAMEAAQAASRAKSQFLANMSHEIRTPMNGMLGMAELLMATRLDEQQRRFVSSVRRSG 327

Query: 61  IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
              L  +     ++              +    + D+ +++ +            V+   
Sbjct: 328 EALLSIINDILDFSKIEAGKLELEETAFNLEDTVADVIELLAETAHRKGLEIAALVENDV 387

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
               +       ++L+NL   A     +G  +   +       +   +  +   G     
Sbjct: 388 PPVLLGDQVRVHQVLMNLVGNAVKFTDQGEVIISGMLKEEHKEEVTVLIRVSDTGIGI-S 446

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I DG                +       L       +  E            L+
Sbjct: 447 DEVKGRIFDGFSQADNSTTRKYGGTGLGLTIARQLVELMGGEIGVESEVGRGSTFWFTLK 506


>gi|149920088|ref|ZP_01908561.1| serine/threonine kinase with GAF domain [Plesiocystis pacifica SIR-1]
 gi|149819031|gb|EDM78468.1| serine/threonine kinase with GAF domain [Plesiocystis pacifica SIR-1]
          Length = 1874

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIR 54
             +++   L     L +L  L S + H+I +P+  I N  EL+     E  V+      I 
Sbjct: 1604 RQSLEAQLRQQQRLESLGTLASGVAHEINNPMQGIMNYAELIKLNPTEPRVIIEFAGEID 1663

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----- 109
              +      ++ +        + D  +            +            E       
Sbjct: 1664 YEANRVATIVRNLLAFSRQEKAADEEVINLAAVVEATLSLIRTLLRSDQIDIEVQIRTDV 1723

Query: 110  ----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---------NENIFSLKINGN 156
                  S++  ++++NL   A  +L          +  +               ++  G 
Sbjct: 1724 PEVRCRSQQIQQVVMNLVTNARDALNERFGEYDERKRIELRVEHSARAGWVSILVEDWGG 1783

Query: 157  LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                P+   +I D    +        +       +  ++   L  E +       +  L 
Sbjct: 1784 GI-PPQVLPRIFDPFYTTKGRDQGTGLGLAVSHGIVKDHGGELTVETVVGEGTCFTLDLP 1842


>gi|115373149|ref|ZP_01460451.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
 gi|115369905|gb|EAU68838.1| signal transduction histidine kinase (sthk) with cheb and cher
            activity [Stigmatella aurantiaca DW4/3-1]
          Length = 1386

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            AK      +         + + H++ +P+  +    +LL    ++D  ++    +   + 
Sbjct: 983  AKEEAERANRAK--DQFLATLSHELRTPLSTMLMQAQLLRRGTMDDAKIKRASEAIERST 1040

Query: 62   IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------- 110
                 +         + +     + + V    +       VS   E+             
Sbjct: 1041 KMQVQLIDDLLDVSRIVTGKLRMEFQTVHLPGVVQAALESVSAQAERKSILFETTLDESL 1100

Query: 111  -----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                       +I+ NL   A      G +V++ ++  +      +   G      E   
Sbjct: 1101 GPVSGDPTRLQQIVWNLLANAIKFSAEGQRVSVVLERMEGSARLQVSDRGAGI-EAEALQ 1159

Query: 166  QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
            +I D  +              +    V  L   +   +  E        + + +L 
Sbjct: 1160 RIFDRFMQEDSSSTRVFGGLGLGLAIVRHLVELHGGTVQAESPGKGQGAIFTVILP 1215


>gi|103486611|ref|YP_616172.1| periplasmic sensor signal transduction histidine kinase
           [Sphingopyxis alaskensis RB2256]
 gi|98976688|gb|ABF52839.1| periplasmic sensor signal transduction histidine kinase
           [Sphingopyxis alaskensis RB2256]
          Length = 482

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 63/227 (27%), Gaps = 23/227 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMR 68
           +  + +   +   H++ +P+ AI   +E L +     +    +           R++ + 
Sbjct: 251 ADRMRSDFVANASHELRTPLAAIIGYVETLQDMNGEDDGATRRRFLSIIEREARRMQQLV 310

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------------GEKIDLS 112
           +       V++        +V    I      Q+  +                   +   
Sbjct: 311 IDLLSISRVEADRFRRPTAEVDLAAIVRHTITQLQDSESARPKDIVAALGTEAMPMLGDE 370

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD 169
            +  ++  N+   A      G  VT+ +         S+   G+            +   
Sbjct: 371 AQLGQLAHNIISNALKYGRPGTPVTVELLREGARVRLSVSDEGDGIAPDHIPRLTERFYR 430

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +     ++    +    V  ++  ++ +L  +        +S    
Sbjct: 431 VDEARSRSVGGTGLGLAIVKHISERHQGQLHIDSEPGKGTSVSISFP 477


>gi|332712207|ref|ZP_08432135.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
 gi|332349013|gb|EGJ28625.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
          Length = 520

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 59/236 (25%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           +AK         D  +   S +CH+  +P+  I  + ELL           +   ++ I 
Sbjct: 262 LAKEQEIQ----DFRSQFVSTVCHEFRNPLSVILTAAELLKRYGNLATQEQKQRYLKRIT 317

Query: 55  LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +S       ++            +               L     + +            
Sbjct: 318 ISVERMTELMEEVLLIGQAEVGRLEFIPTPMNLEQFCQDLIAELCLDQASRNRIVFTSDG 377

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161
              E     +    I+ NL   A    P    VT +      +   +F ++  G      
Sbjct: 378 VYTEVCMDDKLIHYIITNLLTNALKYSPSHEIVTFNLTCDLKQQLVVFRIQDKGIGIAEA 437

Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F          TI    +    V     +++  +            +  + 
Sbjct: 438 DQKKIFESFYRAKNVGTIQGTGLGLSIVKRCVEQHQGEIELTSEVGVGTTFTIKIP 493


>gi|301057261|ref|ZP_07198387.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300448626|gb|EFK12265.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 816

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 65/242 (26%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           M K +      M+ +  L   I HD  + + AI    EL    +++    +  +Q +  +
Sbjct: 432 MEKRL-LQSQKMESIGTLAGGIAHDFNNVLVAIIGFTELSLHAVEKGSEIESDLQAVYTA 490

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------EKID 110
           +  A   +K +      +      I    I +    FI       +            + 
Sbjct: 491 AHRAKELVKQILTFARLSDEAIRPIQPTVIVKEDLKFIRSSIPTTIDIEQDLRSDSFIMG 550

Query: 111 LSRERAKILLNLFMVAHA----------------SLPRGGKVTISVQDSKNENIFSLKIN 154
            + +  ++++NL   A                   L       +           ++   
Sbjct: 551 NATQIHQVMMNLCTNAAQSMEEKGGRLRVVLEDTHLTPDRPKHLLDLKPGEYITITVSDT 610

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      +    I +    +    +   +    V  +      R+  +   +     S  
Sbjct: 611 GTGI-PQDIIGSIFEPYFTTKGPGEGTGMGLAMVHGIVRAYGGRIFVDSTPEIGTTFSLY 669

Query: 213 LE 214
           L 
Sbjct: 670 LP 671


>gi|326315102|ref|YP_004232774.1| ATP-binding region ATPase domain-containing protein [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323371938|gb|ADX44207.1| ATP-binding region ATPase domain protein [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 607

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 58/234 (24%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN------SLELLDEVGIEDEVMQL 52
           +       + +  L  L  + + + H++  P+ A+        +L+         E +QL
Sbjct: 369 LRGTRDAAVQAGKLAVLGQMAAGMSHELNQPLAALQTLSDNAIALDRQGRREDVAENLQL 428

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSW 104
           I   +      ++ ++        V     + D        +A                 
Sbjct: 429 IGQLAARMGRIVRQLKSFVRKEAPVLQPCRVRDALDHALLLLAQRCTAVQARIDVQPFDT 488

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPE 162
                       ++L+NL      ++       +              +   G     PE
Sbjct: 489 GLCVRADPTRLEQVLVNLLRNGLDAVQDRPVREVRFAPAAEDGWVRLRVSDTGGGI-APE 547

Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              ++ +    +       +      ++       L  E +        +  L 
Sbjct: 548 ARGRLFEPFFTTKAGEGLGLGLAVSRIIVEGMGGTLTVEDVPEGGGAGFTVTLP 601


>gi|229084555|ref|ZP_04216826.1| hypothetical protein bcere0022_11900 [Bacillus cereus Rock3-44]
 gi|228698758|gb|EEL51472.1| hypothetical protein bcere0022_11900 [Bacillus cereus Rock3-44]
          Length = 417

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +   + L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKLALAGRIAAGIAHEVRNPLTTVRGYLQFLQEGVSPSNKELFQNLLIPELDRA 245

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----------- 109
              +                  +          +   +    + + E             
Sbjct: 246 NSIITKFLSISKAHEFKREPFPINTFLCEYIQQLLASEVFLHNISIEYHLSSELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    + + NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAKSDKPLSIQITSHRLDNFARITFQDNGIGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     ++        + 
Sbjct: 365 DPFFSTKDAGTGLGLSVTKKIIQNHNGTLKVSSNEN-GTTFIISIP 409


>gi|227530486|ref|ZP_03960535.1| sensor histidine kinase [Lactobacillus vaginalis ATCC 49540]
 gi|227349591|gb|EEJ39882.1| sensor histidine kinase [Lactobacillus vaginalis ATCC 49540]
          Length = 502

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 62/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50
           M   +   +   +D  +     + H++ +P+  I   LE+L   G +D  +         
Sbjct: 247 MFNEMLDRMQRYIDQQSQFVGDVSHELRTPVAIIQGHLEMLQRWGKDDPQVLAESLNASL 306

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              + ++      +   +  ++   +      +  +          +  +    +     
Sbjct: 307 AETKRMKNLVQEMLDLSRAEQVEINFRNQRTVVNDVVHQVFNNFKMLYPEFTFTLDDDLH 366

Query: 108 KID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L+ L   A        ++ IS+    N     ++  G      + 
Sbjct: 367 SPVISDVYRDHLEQVLVILCDNAIKYSQDRKEIHISLSRGMNTVEIGVQDFGEGIAPEDI 426

Query: 164 ---FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +         + +       L       +  E       +   +L 
Sbjct: 427 KKVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSLGAGSIFRIILP 482


>gi|226312204|ref|YP_002772098.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226095152|dbj|BAH43594.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 453

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 67/223 (30%), Gaps = 18/223 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
              +L   L S I H++ +P+  +   +E + +       + +   R   +     ++ +
Sbjct: 218 HQEELRKRLTSDIAHELRTPLNTLLAQVEGMIDGIWEATPKNLDSTRSEVLRLSRLVRDL 277

Query: 68  -----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                      ++        + +  + +          V+   +           +  A
Sbjct: 278 DQVIQVESGSLQMRSEEVELREVVKEVTESMSATFARAQVNFHFKGDHAVWITGDRQRLA 337

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           +I+ NL   A    P GG+V ++V          +K +G      +    F +   G+  
Sbjct: 338 QIVANLLTNACKHTPAGGEVVVTVDKPSTMVRLQVKDSGTGIDQKDLPYVFERFYRGDRS 397

Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +   +K  +  +        ++ L  
Sbjct: 398 RARERGGAGLGLTIVKGIVEAHKGIISLDSSVGEGTTITILFP 440


>gi|261340634|ref|ZP_05968492.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
 gi|288317047|gb|EFC55985.1| sensor protein RcsC [Enterobacter cancerogenus ATCC 35316]
          Length = 948

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 68/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHISANYMPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V    +     ++  G     
Sbjct: 572 EPDVPLTLHGDPMRLQQVISNLLSNAIKFTDT-GCIVLHVCLVGDYLTIRVRDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L       +  +         +  + 
Sbjct: 631 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDTEPGMGSQFTIRIP 689


>gi|153838818|ref|ZP_01991485.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AQ3810]
 gi|149747748|gb|EDM58644.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AQ3810]
 gi|328471667|gb|EGF42544.1| nitrogen regulation protein NR(II) [Vibrio parahaemolyticus 10329]
          Length = 348

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+++  +  + +   +    A
Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQNSIIIERDYDPSLPEILMDA 235

Query: 116 AKILLNLFM---------------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +                           +  I  +  K      +  NG     
Sbjct: 236 DQIEQAMLNIVSNAAQILAHQEHGNITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 347


>gi|94265291|ref|ZP_01289049.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454225|gb|EAT04543.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 564

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 64/243 (26%), Gaps = 31/243 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----R 54
            + +   L  +  + AL  L   I HD  + +  I  + ++      E   ++       
Sbjct: 178 RQQMETQLFQARKMEALGILAGGIAHDFNNILTPIVINTQMARMEVSEHPTLEQNLKQIE 237

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----- 109
            ++  A   ++ +             I LG   +    F+       +    ++      
Sbjct: 238 QAAERAGGLIRQILDFNRQGKHDPRPIHLGPAIKEAMKFLRATLAPNIEMEYKQRAVNDV 297

Query: 110 --DLSRERAKILLNLFMVAHASLPRG--------------GKVTISVQDSKNENIFSLKI 153
                 +  ++++NL + A  ++                   V      +       +  
Sbjct: 298 VAGDPTQIIQVIMNLVLNAAHAMREDGGRLEIVLENDEKGPPVPPPDTLAGGWLRLVVSD 357

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G     PE   +I D    +    +   +    V  +   +   +              
Sbjct: 358 TGPGI-APENLNRIFDPFFTTKGKGEGSGMGLAVVHGIVSRHGGTIAAYSEPGQGTSFEI 416

Query: 212 LLE 214
           +L 
Sbjct: 417 MLP 419


>gi|13470631|ref|NP_102200.1| nitrogen reguration protein nirB protein [Mesorhizobium loti
           MAFF303099]
 gi|14021373|dbj|BAB47986.1| nitrogen reguration protein; NirB [Mesorhizobium loti MAFF303099]
          Length = 380

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 70/242 (28%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51
           MA  I   ++   +   V  L + + H+I +P+  I  + +LL+      +  +   +  
Sbjct: 123 MADKIDRQMTHRGAARSVTGLAAMLAHEIKNPLSGIRGAAQLLELSASDEDRALTRLITD 182

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EK 108
                         F          V+  + L  ++ + ++  A   R+   +       
Sbjct: 183 ETDRIVSLVDRMEVFSDERPIDRYPVNIHVVLDHVKAIAKNGFAKKIRILEDYDPSLPPV 242

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLK 152
                +  ++ LNL   A  ++                     V  +         F ++
Sbjct: 243 FANRDQLIQVFLNLVKNAAEAIGTDPHGEIVLSTAFRPGIRVSVPGTQDRVSLPLEFCVR 302

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG      +    + D  + +  +   +    V  +  E+   +  E           L
Sbjct: 303 DNGPGV-SEDILPILFDPFITTKPNGSGLGLALVAKIVGEHGGIIECESTP-RGTTFRIL 360

Query: 213 LE 214
           + 
Sbjct: 361 MP 362


>gi|116620225|ref|YP_822381.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116223387|gb|ABJ82096.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 556

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 52/230 (22%), Gaps = 25/230 (10%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRL 64
            +  L AL     S + H++ +P+  I ++ + L +     + +V +   L         
Sbjct: 320 RAQRLAALQMEFVSGVSHELRTPLAVIGSAADNLADGVVASDAQVRRYGALIRGEGRRLT 379

Query: 65  KFMRLAFGYTGSVD---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           + +     Y                        +      IE+     +R          
Sbjct: 380 EMVEQVLSYASLQSGKKRVERRAVEIAGVIDGAIEACAGQIEETRCAVEREIPEGLPRVA 439

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                    + NL   A      G  V I            +   G      +       
Sbjct: 440 ADEASLIHCIANLLGNALKYGEPGHHVRIVAATQPGSVEIRVSDTGFGIDAEDLPHIFDA 499

Query: 170 GNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +     I    +    V  +   +   +  E         +  L 
Sbjct: 500 FYRGRSVAEGTIRGTGLGLSLVRRIVEAHDGTVNVESTAGMGSCFTLRLP 549


>gi|240850723|ref|YP_002972123.1| sensor histidine kinase [Bartonella grahamii as4aup]
 gi|240267846|gb|ACS51434.1| sensor histidine kinase [Bartonella grahamii as4aup]
          Length = 844

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 61/241 (25%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
               + S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 457 EDKMMQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRSSDPAHADLINIKNNAN 516

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111
            A   ++ +             +   +    I +            K +           
Sbjct: 517 RAAALVQQLLAFSRKQTLRPEEVDFTEFLSDIRNLIVPLLGNNIQLKIIYGRDLWSVEVD 576

Query: 112 SRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156
                ++++NL + A  ++                +  +              ++   G 
Sbjct: 577 QASFQRVIMNLVINARDAMLDGGIVTIATNNITKQQSAEFNHLGLAIGEYVQLTISDTGA 636

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    ++ +    +        +    V  +  ++   +  E  +         L 
Sbjct: 637 GISAA-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQSGGYIYCESKEGEGATFHIFLP 695

Query: 215 K 215
           +
Sbjct: 696 R 696


>gi|229018656|ref|ZP_04175509.1| hypothetical protein bcere0030_31760 [Bacillus cereus AH1273]
 gi|229024899|ref|ZP_04181329.1| hypothetical protein bcere0029_32050 [Bacillus cereus AH1272]
 gi|228736371|gb|EEL86936.1| hypothetical protein bcere0029_32050 [Bacillus cereus AH1272]
 gi|228742660|gb|EEL92807.1| hypothetical protein bcere0030_31760 [Bacillus cereus AH1273]
          Length = 532

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 73/221 (33%), Gaps = 11/221 (4%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAII 62
            +     +++ V  L + + H + +P+  I   ++LL +  G + E + LI     S   
Sbjct: 298 ELLKKSDTLNAVGQLAAGVAHKVRNPLTVIKGFMQLLQQEVGKDKECLSLILSEISSIEK 357

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK---IDLSRE 114
            ++          +V     L  I       +    I  + R+ ++   E         +
Sbjct: 358 VIQEFLSIAKPNAAVFEPKNLCTILDNVVDLISTQAIMKNIRITLNVDAENLLVECCEIQ 417

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNVE 173
             ++  ++   +  ++  G ++ ISV+   +     S+   G      E+  ++ +    
Sbjct: 418 LKQVFYSILQNSIEAIQNGQEIIISVKKHNSTEIKISILDKGIGI-PSERIKRLGEPFYS 476

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +   +  ++  +        ++    
Sbjct: 477 TKEKGTGVGLMMSYRIIESHGGKISIKSQVGKGTTVTLFFP 517


>gi|229136592|ref|ZP_04265275.1| hypothetical protein bcere0014_54180 [Bacillus cereus BDRD-ST196]
 gi|228646865|gb|EEL03017.1| hypothetical protein bcere0014_54180 [Bacillus cereus BDRD-ST196]
          Length = 418

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 70/226 (30%), Gaps = 16/226 (7%)

Query: 4   NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
            I   +   +   + + L + I H+I +P+  +    +LL+E       +D+ ++++ L 
Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEK 108
                  +            +   + +  I          +   +    K+   + +   
Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              + +    L N+      ++  GG + I++Q  K+  +  +   G      +   +I 
Sbjct: 313 NANTEKLKICLTNIIQNGIEAMKNGGVLQINIQKIKDNIVIDIIDTGIGMSSQQIK-RIA 371

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +T     +       +  E    +  E         S  + 
Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEVESELGKGTHFSITIP 417


>gi|229174303|ref|ZP_04301836.1| hypothetical protein bcere0006_33960 [Bacillus cereus MM3]
 gi|228609160|gb|EEK66449.1| hypothetical protein bcere0006_33960 [Bacillus cereus MM3]
          Length = 510

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 66/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      ++    D ++  
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINAEQKWYIDVMLSE 334

Query: 53  IRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           I          +   +                  +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIQTCNIQALIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +  +N   +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLENTFILIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|148658249|ref|YP_001278454.1| nitrogen specific signal transduction histidine kinase NtrB
           [Roseiflexus sp. RS-1]
 gi|148570359|gb|ABQ92504.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Roseiflexus sp. RS-1]
          Length = 516

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
               + +  L A+  L + I H++ +P+ AI   L L  E           ++L      
Sbjct: 272 QTQLVRAEKLAAIGHLAASIAHEVGNPLQAIQGFLALFLEQCAPETPNQHFLRLAEEEIE 331

Query: 59  SA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
                        R       +VD    +  +  +    +   +   V      +   + 
Sbjct: 332 RIVRVLERLRDLYRPRADVFTNVDVNELIESVLLLTGKQLERSRIRVVRELTPNLPTIQG 391

Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFT 165
              +  ++LLNL + A  ++P GG + +    +           ++   G     PE+ T
Sbjct: 392 VADQLKQVLLNLVLNAAEAMPNGGILHVQTHRAHLASGQEAIAIAITDTGVGI-PPEQLT 450

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I DG   +      +  Y    +   +   +  + I         ++ 
Sbjct: 451 RIFDGLHTTKERGMGLGLYTSKAIVERHLGSISVQSIPGEGTTFEIMVP 499


>gi|120406122|ref|YP_955951.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119958940|gb|ABM15945.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 503

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 59/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   +M  I   S    + ++ + L           
Sbjct: 271 SHELRTPLTTIRGFAELYRQGAARDVEMLMSRIESESRRMGLLVEDLLLLARLDAQRPLD 330

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----------RERAKILLNLFMVAHAS 129
               D+  +  D +   + +    + +                    ++L NL   A   
Sbjct: 331 RHRVDLLTLATDAVHDAQSIAPKRSIKMEVFDGPGTPEVLGDEPRLRQVLSNLVANALQH 390

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    N+ +  +   G   R  +    F +    +           +   
Sbjct: 391 TPETAAVTVRVGTDGNDAVVEVCDEGPGMRPEDAQRVFERFYRTDTSRARASGGTGLGLS 450

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L + +  R+               L +
Sbjct: 451 IVDSLVYAHGGRVSVTTAPGQGSRFRVSLPR 481


>gi|85858057|ref|YP_460259.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85721148|gb|ABC76091.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 725

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 73/241 (30%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIED---EVMQLIRL 55
           +   F    M+ +  L   I HD  + +GAI    E+    L +         ++++   
Sbjct: 343 EKQLFRAQKMEAIGTLAGGIAHDFNNILGAIIGYAEITLHGLYDSPWRPKLERIIRISER 402

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +       L F R +      V   + + +  +++   +     ++      K  +  + 
Sbjct: 403 AKDLVQQILTFSRHSDHEHKPVQPALLIKESLKLLRSSLPATIEIRQDIAATKSTIMADP 462

Query: 116 ---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKINGN 156
               +I++NL   A  ++                     V     +  +  + +++  G 
Sbjct: 463 TRIHQIMMNLCTNAAHAMRETGGVLEVSLKNRDIGAAEIVPDFQLEPGSYVVLTIRDTGQ 522

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               P+   +I +    +    +   +    V  +  +    +  + +          L 
Sbjct: 523 GI-PPDIQNRIFEPFFTTKSPGEGTGLGLSVVYGIVKKYNGMVTVDSVPRKGATFQVFLP 581

Query: 215 K 215
           +
Sbjct: 582 R 582


>gi|78048227|ref|YP_364402.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036657|emb|CAJ24348.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1364

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVVTLEK 872


>gi|255021586|ref|ZP_05293629.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
 gi|254968974|gb|EET26493.1| multi-sensor hybrid histidine kinase [Acidithiobacillus caldus ATCC
           51756]
          Length = 1018

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 49/242 (20%), Gaps = 33/242 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMS 59
           K      +     +   S + H++ +P+ +I    +LL       +       +     +
Sbjct: 614 KEQAERANQAK--SQFLSSMSHELRTPLNSILGFAQLLSTSRREPLSPRQQGFVEHIRDA 671

Query: 60  AIIRLKFMRLAFGYTGSV---------------DSLIGLGDIEQVIEDFIAVDKRVQVSW 104
               L  +                                 +  +  +            
Sbjct: 672 GQHLLSLINDVLNLARIEAGELTFSPEVLSLAALLRETSEMVADLARERDVQLLETLGDD 731

Query: 105 TGEKIDLSRERAKILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNL 157
                       +ILLNL   A          L R         +       ++   G  
Sbjct: 732 PLWVCVDLTRTRQILLNLLSNAIKYNRPGGRVLIRSLAPIPERAERPVCLGIAISDTGIG 791

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               ++  ++             I+   I       L       +  E  +         
Sbjct: 792 I-PADRQHRLFRPFERLGQENGPIEGTGIGLMITKELVERMGGEIRFESREGEGTTFFVF 850

Query: 213 LE 214
           L 
Sbjct: 851 LP 852


>gi|197124170|ref|YP_002136121.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196174019|gb|ACG74992.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 592

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 60/248 (24%), Gaps = 35/248 (14%)

Query: 1   MAKNICFNLSSMDL-----VALLC-----SRICHDIISPIGAIHNSLELLDEVGIED--- 47
           +A      L +  L      A+       S   H++ +P+ A+  +LE +  V   +   
Sbjct: 328 LAHRAAQALENARLYGEAQAAVAARDEFLSIASHELRTPLTALRLALENMRRVASREALE 387

Query: 48  ------------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVI 90
                          +  +         L   R+  G        + LG        QV 
Sbjct: 388 SLPAAYVERVLATAERQGQRLEKLVAALLDVSRIHMGRLELELEDVDLGHAVSEAVAQVE 447

Query: 91  EDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           ++      +V V     +    R   +++  NL   A                       
Sbjct: 448 DEAAQAGSQVTVQGEPVRGRWDRLRISQVATNLLSNAVKYGAGKPVEVSFGTRDGR-AYL 506

Query: 150 SLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
            ++  G      +    F +              +  Y V  +   +   +  E      
Sbjct: 507 RVRDQGIGIDPADQRQIFERFERAVSSRNYGGLGLGLYIVKRIVEAHGGAVRVESAPGEG 566

Query: 207 VVLSALLE 214
                 L 
Sbjct: 567 AAFEVTLP 574


>gi|119900099|ref|YP_935312.1| hydrogen uptake histidine-kinase [Azoarcus sp. BH72]
 gi|119672512|emb|CAL96426.1| hydrogen uptake histidine-kinase [Azoarcus sp. BH72]
          Length = 461

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/264 (8%), Positives = 60/264 (22%), Gaps = 50/264 (18%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------------- 42
           + +     L S  + +L  L + + H++ +PI  I  ++  L                  
Sbjct: 192 LKRTQQQLLHSEKMASLGRLVAGVAHELNNPISFILGNVHALKRYAGRLESYLGAIHGGD 251

Query: 43  ---------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
                                  + D  ++    +        +F  +      + D   
Sbjct: 252 SAEHLAQLRTRLRIDRLLGDLPALIDGTIEGAERTRDIVDGLKRFSAIDREVNEAFDLAE 311

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTIS 139
            +      +         V+ S   +        +  ++++NL   A  +     +  + 
Sbjct: 312 VIERAVSWVRRGARDSFHVRFSMPRKIPMTGSAGQMQQVMMNLVQNAWDATAEQPEQWLD 371

Query: 140 V--------QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLA 190
           +                 S   NG                    +     +       + 
Sbjct: 372 ILAEVEAGTDTGGARVRVSFHDNGPGIAAQHLPQVFDPFFSTKQVGKGTGLGLSISYGII 431

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +  R+          + +  L 
Sbjct: 432 ERHGGRISAANHPAGGAIFTVELP 455


>gi|86160142|ref|YP_466927.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776653|gb|ABC83490.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 592

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 59/248 (23%), Gaps = 35/248 (14%)

Query: 1   MAKNICFNLSSMDL-----VALLC-----SRICHDIISPIGAIHNSLELLDE-------- 42
           +A      L +  L      A+       S   H++ +P+ A+  +LE +          
Sbjct: 328 LAHRAAQALENARLYGEAQAAVAARDEFLSIASHELRTPLTALRLALENMRRVASREALE 387

Query: 43  ---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIE-QVI 90
                  + V+             +  +                 VD    +G+   Q+ 
Sbjct: 388 SLPAAYVERVLATAERQGQRLEKLVAALLDVSRIHMGRLELDLEEVDLGHSVGEAVAQLE 447

Query: 91  EDFIAVDKRVQVSW-TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
           ++      +V VS             +++  NL   A                       
Sbjct: 448 DEAAQAGSQVTVSGAPVHGRWDRLRISQVATNLLSNAVKYGAGKPVEVSYGARDGR-AFL 506

Query: 150 SLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
            ++ +G      +    F +              +  Y V  +   +   +  E      
Sbjct: 507 RVRDHGIGIDAADQRQIFERFERAVSSRNYGGLGLGLYIVKRIVEAHGGTVRVESAPGEG 566

Query: 207 VVLSALLE 214
                 L 
Sbjct: 567 ADFEVTLP 574


>gi|319892475|ref|YP_004149350.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162171|gb|ADV05714.1| Osmosensitive K+ channel histidine kinase KdpD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464422|gb|ADX76575.1| signal transduction histidine kinase SsrB [Staphylococcus
           pseudintermedius ED99]
          Length = 585

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 61/219 (27%), Gaps = 23/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +         +E + ++   S      +  +       
Sbjct: 359 ASVSHELRTPISLLQGYTESIVDGVVTEPEEINEFLTVVLDESKRLSRLVNELLNVAKMD 418

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------KIDLSRERAKILLN 121
                 T  +  +  L     +     A +  + + +  +               ++L N
Sbjct: 419 AEGLNVTQELQPMQDLVRKMAMKYRQQAQELNLTLDFQMDGEMASLWYYDFDRMEQVLTN 478

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID- 177
           L   A      G  ++I      +  I +++  G           F +    +       
Sbjct: 479 LVDNASRYTQPGDTISIKATADHDHQILTIEDTGVGIAPQHLEKLFERFYKVDSARKRGS 538

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +  +   ++ + +   +  E   D        L K
Sbjct: 539 QGTGLGLFITRMIVNAHGGHIRVESELDKGTKFIISLPK 577


>gi|281355428|ref|ZP_06241922.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
 gi|281318308|gb|EFB02328.1| multi-sensor signal transduction histidine kinase [Victivallis
           vadensis ATCC BAA-548]
          Length = 596

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 59/220 (26%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIR--------- 63
             + + H+I +P+  I  ++E L +  I +       MQ+I + S               
Sbjct: 371 FVANVSHEIKTPLTVIRGAVETLRDGAIHEPESAERFMQIIEMHSERLNALVQDILSLSQ 430

Query: 64  -LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KIL 119
                         V+    +    ++ +          V  T    ++  +     + +
Sbjct: 431 LECRAVGDGYNMVPVNVSTPISTAVELAQARADAAGLKLVVETSADPEVLIDVQLVEQAI 490

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VES 174
           LNL   A        +V I+ ++   E +  +  +G           F +    +     
Sbjct: 491 LNLIDNAIKHSGEKSEVRITAREESGEAVIEVADHGCGIPAEHLPRVFERFYRVDKARSR 550

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +   +                +  L 
Sbjct: 551 KAGGTGLGLAIVKHVMQLHHGSAEVHSTVGQGSTFTLRLP 590


>gi|228938670|ref|ZP_04101275.1| hypothetical protein bthur0008_13340 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971551|ref|ZP_04132175.1| hypothetical protein bthur0003_13290 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228788210|gb|EEM36165.1| hypothetical protein bthur0003_13290 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821046|gb|EEM67066.1| hypothetical protein bthur0008_13340 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326939177|gb|AEA15073.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 423

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSTSNQELFKNLLIPELDRA 245

Query: 61  IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 246 NNIITKFLAVSKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|228978162|ref|ZP_04138540.1| hypothetical protein bthur0002_13650 [Bacillus thuringiensis Bt407]
 gi|228781634|gb|EEM29834.1| hypothetical protein bthur0002_13650 [Bacillus thuringiensis Bt407]
          Length = 429

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 192 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSTSNQELFKNLLIPELDRA 251

Query: 61  IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 252 NNIITKFLAVSKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 311

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 312 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 370

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 371 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 415


>gi|239628829|ref|ZP_04671860.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518975|gb|EEQ58841.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 468

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 58/235 (24%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M+  +              + + HD  SP+ +I   LE + +      + ++ +  +   
Sbjct: 233 MSDELNKMEEYQK---NFIANVSHDFRSPLTSIKGYLEAILDGTIPEDMYEKYLSRVISE 289

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWT 105
           +       + M          +    + D    + D     E                  
Sbjct: 290 TKRLHKLTESMLTLNSLDAKGYLSRTNFDINRVIKDTAASFEGTCDAKNISFDLTFSDSI 349

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPE 162
                   +  ++L NL   A         + I       +   S+K  G         +
Sbjct: 350 QMVYADLGKIQQVLYNLIDNAIKFSHHNSTIYIQASGRYEKIFVSVKDTGIGIPKDSQKK 409

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + +    ++    D     +    V  +   +   +     +         L +
Sbjct: 410 IWERFYKTDLSRGKDKKGTGLGLSIVKEIVQSHGENIDVVSTEGVGTEFIFSLPR 464


>gi|218779128|ref|YP_002430446.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218760512|gb|ACL02978.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 526

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 76/231 (32%), Gaps = 21/231 (9%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIH----NSLELLD--EVGIEDEVMQLIRL 55
                + S  L A+  L + + H++ +PI  I       LE  +  +     ++M  +  
Sbjct: 279 REALLIQSHKLRAVGTLTAGVAHELNNPINNIMITGHMFLEDYESTDDEERIDMMNDVVN 338

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-----GE 107
            +  A   +  +      +GS  + + + ++ +             ++ + ++       
Sbjct: 339 EANRAKAIIANLLDFARESGSQLAPLDMAEMLKDTIALASNRLKRSKINIDFSSTDKLPR 398

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT 165
               S++  ++ LNL + A  +   GG +T++    D  +     +   G         +
Sbjct: 399 VHGDSQQLRQVFLNLILNAIDASQSGGNITVTVLPADEPHYIAVKVIDYGTGI-PKHILS 457

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I D    +        +       +  ++  ++     + H    +  L 
Sbjct: 458 SIFDPFFTTKPQGKGTGLGLSMSQGIITKHGGQIRVFSQEGHGTTFTVTLP 508


>gi|167755207|ref|ZP_02427334.1| hypothetical protein CLORAM_00712 [Clostridium ramosum DSM 1402]
 gi|167705257|gb|EDS19836.1| hypothetical protein CLORAM_00712 [Clostridium ramosum DSM 1402]
          Length = 486

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 61/234 (26%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +     +    L + L   I HD+ +P+ +I      L    ++   D  + +I+  S 
Sbjct: 246 KEEARLQVEREKLKSTLLRSISHDLRTPLTSIAGGANFLVNNLDIVESDTSLNIIQDISK 305

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------------IEDFIAVDKRVQVSWT 105
            A+     +      T   +    +    +V                        +    
Sbjct: 306 EAMRLNGMVENLLNMTRIQEGNFKINKKLEVVDDIISTAVSAITNRKENHELVVKETKDI 365

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L+NL   A    P   KV +      N  IF +  NG      +   
Sbjct: 366 ILFPCDAQLIVQVLVNLLDNAFKHTPDASKVMLKAFVRNNNIIFQVIDNGKGIEIKQLNH 425

Query: 166 QIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              D    S           +       +   +K  +     D         L 
Sbjct: 426 IFDDFFTTSLDNGDHKRGIGLGLAICKAIVEAHKGEIKAFNNDLGGATFELSLP 479


>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 866

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 69/235 (29%), Gaps = 20/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       S  L +   + I H++ +P+  +  +L LL +     +  ++  +++   
Sbjct: 323 LIKAKEQAEESNRLKSEFLNVISHELRTPLTIMLGNLPLLTDPNDLPDAEEIADIATDIE 382

Query: 61  I-------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                            K           + S+  L          +A +K + +    +
Sbjct: 383 DSGQHLLTLINDLLDLSKIEAGKMTIQQELLSVAALTQDVITSIQVMAHEKNLTIETEID 442

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFT 165
            I++  +  ++   L  +   ++       I   ++   ++  F ++  G      +   
Sbjct: 443 DIEVFADPIRLKQILLNLLGNAIKFTENGFIKVKIKPMAHQVCFFVEDCGCGIDEKDVPF 502

Query: 166 QIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                           D   +       L   +  ++  + +     V S  + K
Sbjct: 503 IFDAFRQSDSSAARRADGTGLGLAITKKLVELHNGKISVQSLLGKGSVFSFSIPK 557


>gi|146339710|ref|YP_001204758.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
 gi|146192516|emb|CAL76521.1| Putative sensor histidine kinase with a PAS domain [Bradyrhizobium
           sp. ORS278]
          Length = 610

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56
           +A++      +        + + H++ +P+ AI    E+L +            +  +L 
Sbjct: 341 LARSAAERADAAK--TRFLATMSHELRTPLNAIIGFSEMLMQEQVLVLNAARRREYAQLI 398

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------Q 101
           + S    L  +      +        L          +     +                
Sbjct: 399 NDSGQHLLSVVNGILDMSKMESGHFELTPEPFAPRTALFNCCNLLALRARENGVDLAADA 458

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      R   +I++NL   A     RGG+VT+S        +  +   G      
Sbjct: 459 PHDLPVITGDPRAFKQIVINLVSNAIKFTERGGRVTVSAGVDGARLLLRITDTGVGIAAD 518

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D         +   +   +    V  L   +   +  E   D    ++  L 
Sbjct: 519 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVTLHGGEMSIESKLDEGTTVTIALP 576


>gi|29347071|ref|NP_810574.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338969|gb|AAO76768.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 601

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 65/227 (28%), Gaps = 20/227 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     +L+E   ++E  Q I +   +  
Sbjct: 375 AKEKAEEADRLKSAFL--ANMSHEIRTPLNAIVGFSSMLEEAEDQEEKHQYITIIEDNNK 432

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+                 +      +      L    Q+        +         
Sbjct: 433 LLLQLISDILDLSKIEAGTFDIIPERVNAKQLCNDLFQAMQMKTSPQVELRLKDNLPELT 492

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++LLN    A       G +TI  Q   NE  FS++  G     PEK   I
Sbjct: 493 FTSDKNRLYQVLLNFVTNALKFTSE-GNITIDYQIDGNEVKFSVQDTGMGI-EPEKQEAI 550

Query: 168 VDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               V   S I    +       +  +   ++  E            
Sbjct: 551 FTRFVKLNSFIPGTGLGLPICQSIVTQLGGKIGVESEPGRGACFWFT 597


>gi|154245239|ref|YP_001416197.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159324|gb|ABS66540.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 690

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
           +A      + S  L A+  + + + H+I +P+  I  +L++  +              LI
Sbjct: 443 LAATQRQLVMSEKLAAIGEITAGVAHEINNPVAVIQGNLDVARDVLGPAAAPVRTEFNLI 502

Query: 54  RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   I +  +           +   V     +GD   +++  +   +   V     
Sbjct: 503 DQQVHRITIIVSKLLQFARPAEFAGHLEPVAPSEVIGDALVLVQYLLGRGEIAVVRDESA 562

Query: 108 KI---DLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
                    E  ++L+NL + A  ++P+      +   +  + +     ++   G     
Sbjct: 563 TRLVLMNRVELQQVLINLMVNAAHAMPQGGTLTLRTRDTAHNGRAGVSIAVADTGPGI-A 621

Query: 161 PEKFTQIVDGNVESTIDS-----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   ++ D    +           +       L       +               L 
Sbjct: 622 PEHVARVFDPFFTTKPQGGDKAGTGLGLSISFTLVDRAGGTMSLASPPGGGATFVLWLP 680


>gi|134300143|ref|YP_001113639.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
 gi|134052843|gb|ABO50814.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           reducens MI-1]
          Length = 460

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 67/225 (29%), Gaps = 14/225 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49
           M K I   L  ++LV  + + I H+I +P+  +   L+L        ++           
Sbjct: 226 MEKEIK-KLDRLNLVGQVAAGIGHEIRNPLTTVRGFLQLFQTKKESCDIYKEQFMLMIEE 284

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +          +   +              +  +  + Q             +    + +
Sbjct: 285 LDRANSIITEFLTLARNKPERVEMKNLNSIVTKILPLLQAQALKEEKYVYAVLDKVPDLL 344

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               E  +I+LNL      ++ RGG +TI     +   I S++  G     PE   +I  
Sbjct: 345 LDENEIRQIILNLIRNGLDAMSRGGNITIRTYIQEPHTILSIRDEGEGI-KPEVLEKIGT 403

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +A  +   +  +   +   +      
Sbjct: 404 PFYTTKDSGTGLGLAICYGIAERHNASVDVKTGPN-GTIFLIKFP 447


>gi|330505537|ref|YP_004382406.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919823|gb|AEB60654.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 640

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            +I        L     S + H++ +P+ AI  SL L+      +      +++++ + +
Sbjct: 401 SDISERKRGEQLQNEFVSTVSHELRTPLTAIAGSLGLINGGALGEVPQAMRQMLEIAQSN 460

Query: 57  SMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----T 105
           S      +  +            +      L  L           A   +VQ+       
Sbjct: 461 SQRLRHLIDDLLDMDKLVAGKMQFDLQPLQLRPLLQQALRNNQPYAERHQVQLQLLASAD 520

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            + +  ++   ++L NL   A      G  V ++   ++     S++  G       K  
Sbjct: 521 CQVMADAQRLEQVLANLLSNAAKFSAAGQTVELAAGLAQGWVRISVRDYGQGIAEDFKPR 580

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +       +      R+  +  +         L 
Sbjct: 581 IFSKFAQADAGDTRRQGGTGLGLAISKEIIEHMGGRIGFDSTEGQGSTFWLSLP 634


>gi|317475821|ref|ZP_07935078.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907981|gb|EFV29678.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 629

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 15/235 (6%), Positives = 60/235 (25%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50
           + +     + + +       L +   + + H+I +P+ AI     LL   ++    +  +
Sbjct: 383 LKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLLPYMEDAKEREYYI 442

Query: 51  QLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            LI  ++   +  +                          + +        +     ++ 
Sbjct: 443 SLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVPEGVTLKK 502

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARF 160
            +      + ++  +I   L  +   +L    +  +    +  ++    S+   G     
Sbjct: 503 RYPASPCLIEQDSMRIKQILSNLLSNALKNTTQGYVEVSYETEQSGVKISVTDTGRGIPQ 562

Query: 161 PEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +      +       +  +    +    +       +    
Sbjct: 563 EKLGVIFERFEKADSYIQGAGLGLSICKSIIEQMNGTIEVASVLGEGSTFTVTFP 617


>gi|256788795|ref|ZP_05527226.1| two-component sensor [Streptomyces lividans TK24]
 gi|289772689|ref|ZP_06532067.1| two-component sensor [Streptomyces lividans TK24]
 gi|289702888|gb|EFD70317.1| two-component sensor [Streptomyces lividans TK24]
          Length = 379

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 51/234 (21%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 138 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 197

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G   Q          R  +      
Sbjct: 198 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVASGLEADRFLLRLAQPL 257

Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            DL  +     ++L NL   A                   +        ++   G     
Sbjct: 258 PDLWADPDKVDQVLSNLLENAVRHGEGTVTIDVTPTASPREGEDTGTSVTVSDEGAGIPE 317

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        S      +  Y V  +   +   +               L 
Sbjct: 318 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPGGGAEFRFTLP 371


>gi|167758970|ref|ZP_02431097.1| hypothetical protein CLOSCI_01316 [Clostridium scindens ATCC 35704]
 gi|167663377|gb|EDS07507.1| hypothetical protein CLOSCI_01316 [Clostridium scindens ATCC 35704]
          Length = 896

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRL 55
           K     L    L A L   I HD+ +P+ +I  + E L                  +   
Sbjct: 659 KESAVRLQKEQLRANLLRSISHDLRTPLTSISGNAETLLGNGEQIKTEQKNAIYKDIYDD 718

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--------DKRVQVSWTGE 107
           S     +    + +     GS++  +    +E VI + +          +  V       
Sbjct: 719 SMWLINLVENLLSVTRIENGSMELNLQGEIMEDVIMEALRHVNRRGKEQEIEVDCDEFLM 778

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                R   ++++NL   A    P    ++I  +   +  + S+  NG      +K    
Sbjct: 779 VRVDVRLMMQVIINLVDNAIKYTPPLSIISIKAKRFGDRAVISVSDNGPGIPDDQKEELF 838

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       +   +  ++          +    L+
Sbjct: 839 RMFYTVNHSVADGRRGMGLGLTLCQAIVGAHGSKIKVYDNVPQGTIFRFELK 890


>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
 gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
           DSM 8797]
          Length = 1362

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 57/244 (23%), Gaps = 33/244 (13%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L      A   SR        + H+I +P+ A+    ELL +  +     + +
Sbjct: 668 EKQAEEELRQAKEAAEAASRAKSAFLATMSHEIRTPMNAVIGMTELLLDTDLNSTQREYL 727

Query: 54  RLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVD 97
            +   S           +  +    G  D                     +     + + 
Sbjct: 728 TMVQESGESLLSVINDILDFSKIEAGRFDLEKAPFHLRENLGDTMRSLAVRAHHKHLELA 787

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKI 153
             +        +       +I++NL   A      G  V          ++ +  F ++ 
Sbjct: 788 FHLDADVPDTIVGDRFRLRQIIVNLVGNAIKFTEEGEIVLDVNYDFQSKNELQLHFVVRD 847

Query: 154 NGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      ++          D ++        +       L      ++           
Sbjct: 848 TGIGIPEDKQQQIFQAFEQVDESMARRFSGTGLGLAIASRLIEMMGGKIWVNSEVGKGSE 907

Query: 209 LSAL 212
               
Sbjct: 908 FHFT 911


>gi|115378066|ref|ZP_01465244.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115364905|gb|EAU63962.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 688

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45
            K +   L+ +  + AL  L   + H+I +P+  I ++L  L+E               +
Sbjct: 292 RKTLETRLAVADRMAALGTLAGGVAHEINNPLTFITSNLLYLEESLGPVAADQLPHIEEM 351

Query: 46  EDEVMQLIRLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
              V      +            F R+       VD   GL     +    +    R+  
Sbjct: 352 RKAVFDAREGAHRVRTIVRELRTFSRVEDARRVPVDVHRGLDFAISMAAQELRPRARLVR 411

Query: 103 SWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKING 155
            +              ++ LNL + A  ++P G     +V    +     +    ++  G
Sbjct: 412 DYGQIPAVLGDETRLGQVFLNLLVNAAQAIPEGNPGEHTVTVHTHLSESGQVQVEIRDTG 471

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +    PE   +I +    +        +       +   +   +          V + LL
Sbjct: 472 SGM-RPEVLARIFEPFFTTKPVGVGTGLGLSICHGIVAAHGGSISARSELGKGTVFTVLL 530

Query: 214 E 214
            
Sbjct: 531 P 531


>gi|94265110|ref|ZP_01288875.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454397|gb|EAT04695.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 699

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/250 (8%), Positives = 59/250 (23%), Gaps = 39/250 (15%)

Query: 4   NICFNLSSMDLVA------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
                + S  L A               + + H+I +P+ A+    +LLD+  ++ +  Q
Sbjct: 192 RREREIQSHLLAAKEQAEGALRAKGEFLAGMSHEIRTPLTAVLGMADLLDKTRLDSQQRQ 251

Query: 52  LIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            +  S  +                         +   D    +    +++          
Sbjct: 252 YVAASRAAGENLLDLINGILDLSKIEAGRLEVESVEFDLDQLVRQTCEIMNLRARQQGLE 311

Query: 101 QVSWTGEKIDL-----SRERAKILLNLFMVAHAS------LPRGGKVTISVQDSKNENIF 149
            V  +                ++L+NL   A         +     +  +          
Sbjct: 312 FVHHSSCAGPCLVMGDPTRIRQVLVNLIGNAIKFTEEGRVMVELACLPAAPPYPGPFFRC 371

Query: 150 SLKINGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++   G      ++     D      ++        +       L      ++     + 
Sbjct: 372 TVSDTGIGIPAAKQEMIFEDFAQADSSMTRRYGGTGLGLAISRKLVTMMGGQISLVSREG 431

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 432 GGSTFTMEIP 441


>gi|21220093|ref|NP_625872.1| two-component sensor [Streptomyces coelicolor A3(2)]
 gi|3581851|emb|CAA20807.1| putative two-component sensor [Streptomyces coelicolor A3(2)]
          Length = 379

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 51/234 (21%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 138 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 197

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G   Q          R  +      
Sbjct: 198 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVASGLEADRFLLRLAQPL 257

Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            DL  +     ++L NL   A                   +        ++   G     
Sbjct: 258 PDLWADPDKVDQVLSNLLENAVRHGEGTVTIDVTPTASPREGEDTGTSVTVSDEGAGIPE 317

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        S      +  Y V  +   +   +               L 
Sbjct: 318 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPGGGAEFRFTLP 371


>gi|229084949|ref|ZP_04217201.1| hypothetical protein bcere0022_15730 [Bacillus cereus Rock3-44]
 gi|228698265|gb|EEL50998.1| hypothetical protein bcere0022_15730 [Bacillus cereus Rock3-44]
          Length = 330

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MA  +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 95  MADELNTM---ERMRQEFVSNVSHEIQSPLTSIKGFALALQDDYLTDEKRKHYLTIIETE 151

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +         +               +            +  + +  +K +++  + EK+
Sbjct: 152 TTRLSKLSHNLLKLTLLESEEYVPERVTYRLDQQLKQIVLNCEPLWSEKEIELELSLEKM 211

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +  +  +    ++  G      +    
Sbjct: 212 YITADEESMSQVWINLLSNSIKFTPNGGTITIQLMQNGEQAEVRIRDTGIGISEEQRGHI 271

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E +          + 
Sbjct: 272 FERFYKADSSRNRAFGGSGLGLAIVKKVIDLHQGEIQVESVVGDGTEFIISIP 324


>gi|229815014|ref|ZP_04445352.1| hypothetical protein COLINT_02057 [Collinsella intestinalis DSM
           13280]
 gi|229809501|gb|EEP45265.1| hypothetical protein COLINT_02057 [Collinsella intestinalis DSM
           13280]
          Length = 911

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ AI  S  +L + G    + + ++L      
Sbjct: 669 REEAAVLAKNEQLRANLLRSIGHDLRTPLTAISGSAAVLRDGGEKLEDAKRLELADAIYN 728

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------------FIAVDKRVQVSWT 105
            ++  +  +      T   D  + L    +++++                          
Sbjct: 729 DSLWLIDTVENLLAITRIEDGDMQLNLTSELMDEVIAAALSHVARESHGHRVTITHTDEI 788

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++L NL   A    P+G  VTI  +   +  +  +  +G      +   
Sbjct: 789 LLVKIDVHLIMQVLTNLITNAFKYTPKGSTVTIGARREGSSVVVEVADDGPGVSDRDKPR 848

Query: 163 KFTQIVDGNVESTIDSH---DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +         +DSH    +       +   +   +       H  V    L 
Sbjct: 849 VFDRFFIAEGPRPVDSHRSFGLGLSLCRSIIEAHGGIIEVADNKPHGAVFRFTLP 903


>gi|220929135|ref|YP_002506044.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999463|gb|ACL76064.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 464

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 72/230 (31%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           ++  N+   + L   L   + H++ +P+  + + +E +       +        + I   
Sbjct: 232 DLAENMEKQETLRRRLTGDVAHELRTPLATLQSHMEAMIDGIWSADSERLKSCHEEIVRI 291

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           S       +  +              +       ++    +F+     ++++     +  
Sbjct: 292 SKMVGDLERLAKYESENITLNMDTFDITKLAKRQVQNFETEFLCKGLELELTGPSCLVYA 351

Query: 112 SRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
            +++  ++ +NL   A    P+GG V + +QD+ N    S++ NG      +    F + 
Sbjct: 352 DKDKISQVFVNLLSNALKYTPKGGSVELHIQDNNNFIEISVEDNGLGIPEEDLPYIFERF 411

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +           I       +   +   +  +            + K
Sbjct: 412 YRADKSRDRLTGGSGIGLTICKSIVLAHGGDIYAQSNPGKGTKFIFTVPK 461


>gi|28896893|ref|NP_796498.1| nitrogen regulation protein NR(II) [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260877791|ref|ZP_05890146.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AN-5034]
 gi|260902584|ref|ZP_05910979.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AQ4037]
 gi|308095206|ref|ZP_05904055.2| nitrogen regulation protein NtrB [Vibrio parahaemolyticus Peru-466]
 gi|308125978|ref|ZP_05778415.2| nitrogen regulation protein NtrB [Vibrio parahaemolyticus K5030]
 gi|28805101|dbj|BAC58382.1| nitrogen regulation protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308088503|gb|EFO38198.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus Peru-466]
 gi|308089873|gb|EFO39568.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AN-5034]
 gi|308109619|gb|EFO47159.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus AQ4037]
 gi|308113476|gb|EFO51016.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus K5030]
          Length = 348

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+++  +  + +   +    A
Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQNSIIIERDYDPSLPEILMDA 235

Query: 116 AKILLNLFM---------------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +                           +  I  +  K      +  NG     
Sbjct: 236 DQIEQAMLNIVSNAAQILAHQEHGNITIRTRTVHQANIHGKRCKLAARIEITDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 347


>gi|330977295|gb|EGH77249.1| sensor histidine kinase [Pseudomonas syringae pv. aptata str. DSM
           50252]
          Length = 436

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPFPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426


>gi|325925062|ref|ZP_08186484.1| PAS domain S-box [Xanthomonas perforans 91-118]
 gi|325544574|gb|EGD15935.1| PAS domain S-box [Xanthomonas perforans 91-118]
          Length = 1364

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVVTLEK 872


>gi|317479397|ref|ZP_07938531.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316904471|gb|EFV26291.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 623

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 60/236 (25%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50
           + K     + + +       L +   + + H+I +P+ AI     LL   +     ++ +
Sbjct: 383 LKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLLHYVENEQEREQYI 442

Query: 51  QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            LI  ++   +  +             + L   +    + +       +           
Sbjct: 443 SLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPAGVKLFA 502

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
              +  G+         +IL N    A  +  +G        D+      S+   G    
Sbjct: 503 RYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGHIEVYYETDTDG-IRISVSDTGCGIP 561

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +            +      +       +  +    +  +         +  L 
Sbjct: 562 PDKLGMIFERFEKVDSFAQGAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELP 617


>gi|301055130|ref|YP_003793341.1| PAS/PAC sensor signal transduction histidinekinase [Bacillus
           anthracis CI]
 gi|300377299|gb|ADK06203.1| PAS/PAC sensor signal transduction histidinekinase [Bacillus cereus
           biovar anthracis str. CI]
          Length = 510

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
           + +       S  L     L + I H+I +P+ ++   L LL  +    +   + ++   
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEEQKWYIDVMLSE 334

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                                             +  I                 +  + 
Sbjct: 335 ISQMESITSQFMAMSKPQVLAIQTCNIQTLIEEVVTFILPTAIMHSVHIIMDHFDYVYDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQI 167
                +  ++ +N+   A  ++P GG + I  +    N  +  +   G      ++ +++
Sbjct: 395 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQTKPLEGNFTLIRIIDEGCGI-PEDRISRL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 500


>gi|295083823|emb|CBK65346.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 547

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 52/228 (22%), Gaps = 20/228 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    NL  +    L  + + H+I +P+ AI     LL E   + E    +        
Sbjct: 302 AKEKAENLDRLKSAFL--ANMSHEIRTPLNAIVGFASLLIESDDKKERQDYVD-IMQENT 358

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TG 106
             L  +         +++      ++ +       D                        
Sbjct: 359 ELLLQLISDILDLSKIEAGTLDFTMDHLDIKSFCEDIMRNYDIKEDKPVPVLLAPDLPEY 418

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                 +   +++ N    A      G  +      +++    F++   G      +   
Sbjct: 419 YIYTDKKRLMQVITNFINNALKFTNEGQIMLEYRHKAESNEIEFAVTDTGMGIAPDKVDQ 478

Query: 166 QIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    S      +       +       +  E            
Sbjct: 479 VFDRFVKLNSFSKGTGLGLSICRSIIKHLGGTIGAESEIGVGSRFWFT 526


>gi|264676669|ref|YP_003276575.1| osmosensitive K+ channel signal transduction [Comamonas
           testosteroni CNB-2]
 gi|262207181|gb|ACY31279.1| osmosensitive K+ channel signal transduction [Comamonas
           testosteroni CNB-2]
          Length = 897

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     +    +   L S + HD+ +P+  I  + +       +     ++      A 
Sbjct: 658 AQQTQIAMEGERMRNTLLSAVSHDLRTPLTGILGAAQAALPHAPQGPAHHMLVQIRNQAQ 717

Query: 62  IRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              + +                      +  L                +Q S   +   L
Sbjct: 718 ALQQLVDNLLAMARLQQGGVQLKREWLPVDELVGSALAQMRERLAAHALQTSLPADLPLL 777

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +     ++L+NL   A    P G  +T++   +  + + S++  G          Q+ 
Sbjct: 778 QLDAVLMERVLVNLLDNAIKYTPEGTTITVAASVADGDCVLSVQDAGPGLPVHLSAEQLF 837

Query: 169 DGNVESTID----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           +       +       +       +   +  RL           + S  L 
Sbjct: 838 EPFTRGQAESAVFGMGLGLALAQRIVQAHGGRLRVAQADPGPGTIFSVHLP 888


>gi|298527948|ref|ZP_07015352.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511600|gb|EFI35502.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 883

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 65/240 (27%), Gaps = 31/240 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L S  + A+  L   I HD  + + +I NS EL    LD      + ++ +  +S 
Sbjct: 507 ERQLLQSQKMEAMGTLAGGISHDFNNILTSIMNSTELAQGDLDPDSPAYQDLERVLKASH 566

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDL 111
                ++ +      +        L ++ +     +       +                
Sbjct: 567 RGRDLVQRILTFSRPSQEGFRPTVLPELVRDSVSLLQSSLPRNIEVRSSVSGGYEPVNVN 626

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISV---------------QDSKNENIFSLKINGN 156
             + +++++NL   A  ++                           +       +   G 
Sbjct: 627 PTQISQVVMNLCTNAFQAIQDQKGTLTINLEEIELDVYRAEELDMPAGKAFRLEISDTGP 686

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I D    +        +    V+ +   +K  +  +   D       LL 
Sbjct: 687 GIDRRDL-DKIFDPFFTTKSQSGGTGLGLAVVLGIVKNHKGVIQVDSSPDQGTSFEILLP 745


>gi|254502393|ref|ZP_05114544.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
 gi|222438464|gb|EEE45143.1| hypothetical protein SADFL11_2432 [Labrenzia alexandrii DFL-11]
          Length = 756

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 64/237 (27%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSS 57
           +       + +   +   + I H++ +P+ AI    +++ +        D      +   
Sbjct: 508 QEEKTRAEAANQAKSEFLANISHELRTPLNAIIGFSDIMTQEMFGPLGTDRYADYCKDIY 567

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------------QVS 103
            S    L  +      +      + +        +      R+               V+
Sbjct: 568 SSGTYLLNVINDILDMSKIEAGRMSIETEVVNASEAAEDAARIITGAASEKNIVISADVA 627

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    R   ++LLNL   A    P  G VT+  +   ++  F +   G      + 
Sbjct: 628 DNLHVDVDKRALKQVLLNLLANAVKFTPDHGTVTLKARPRGDKVRFEVTDTGIGISERDI 687

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++             T     +       L   +  +L  E       V+S  L 
Sbjct: 688 -ERLAKPFVQVENQFTKTHQGSGLGLAIARSLVELHGGKLAIESEVKKGTVVSFSLP 743


>gi|254426852|ref|ZP_05040559.1| PAS fold family [Alcanivorax sp. DG881]
 gi|196193021|gb|EDX87980.1| PAS fold family [Alcanivorax sp. DG881]
          Length = 980

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 64/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +         +  L ++  L + + H+I +P+ AI    + LD     +E ++  +    
Sbjct: 741 LRHMEAHLAHNERLASIGRLAAGVAHEIGNPVTAIACLAQNLDSETDAEEQLESSQQILE 800

Query: 59  SAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                 + +                       D++     +  +  D        Q    
Sbjct: 801 QTRRITRIVESLVTFSHSGGIKHSQHVPVNIRDTVDEAISLLLLDPDHRQQPFTNQCEPE 860

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  +   ++ +NL   A  +      VT+  + +       ++  G+     E   
Sbjct: 861 HWVQGDPQRLLQVFINLLGNAADASADKQPVTVRCESADEVLDVIVEDQGHGI-PDELRD 919

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLE 214
            + +  V S        +    V  +  E+   +  E    D         L 
Sbjct: 920 ALFEPFVTSKPPGRGTGLGLALVYSIIEEHLGAIRVESPITDQGGTRFIIRLP 972


>gi|167465701|ref|ZP_02330790.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322381731|ref|ZP_08055688.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154321|gb|EFX46640.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 503

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 66/225 (29%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53
            K       S  L  +  + + + H+I +P+  +   ++L        +   E  + +L 
Sbjct: 276 KKTEELFRKSEKLTVIGQIAAGVAHEIRNPLTTLKGFIQLFHAGEEGKQEYYEVMMGELN 335

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           R+  +   + +        +       I    +  +  +    + R+ V+   +   +  
Sbjct: 336 RIELIITEMLVLAKPHMSHFQPRHIDKIIQNVLILLDTEAKHKNIRIVVAGEADLAPVLC 395

Query: 114 ERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           E  ++      +   ++                 K+     +   G     PE+  ++ +
Sbjct: 396 EENQLKQLFIHLLKNAVESMEHGGKILIQIRGHGKDRICVRITDQGCGI-APEQMHKLGE 454

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  +++  +  E        +S  L 
Sbjct: 455 PFYTTKEKGTGLGMMISYKIIEDHQGTMEIESKMGEGTTVSVYLP 499


>gi|39996398|ref|NP_952349.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983278|gb|AAR34672.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 726

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 32/245 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            + +   L  +  + A+  L   I HD  + +  I     +L        +     D+++
Sbjct: 355 RREMLQRLGQAHKMEAVGRLAGGIAHDYNNKLTVILGYAHVLKLTGFQSKEAPEQLDQII 414

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107
           +    S       L F R        VD    +    + +   I  D  +          
Sbjct: 415 RAAEHSRDITRQLLAFTRSERVNPVRVDLNRLISQSSKSLTRLIGEDITLSHVAGADLWP 474

Query: 108 KIDLSRERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLK 152
                 +  ++L+NL M A  +               L R     +         + ++ 
Sbjct: 475 VRIDPTQADQLLMNLVMNARDAIAGTGSVTIATSNVVLDRATVRHLQGASPGEYVLMTVS 534

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G     PE    I +    +        +    V  +  +N   +  E       V S
Sbjct: 535 DTGCGM-DPEVMEHIFEPFYTTKEMGKGTGLGLATVYGIVRQNGGAISVESEPGGGSVFS 593

Query: 211 ALLEK 215
             L +
Sbjct: 594 IYLPR 598


>gi|77359607|ref|YP_339182.1| sensory transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874518|emb|CAI85739.1| conserved protein of unknown function ; putative sensory
           transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 893

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 61/239 (25%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M   +   +     +  L +   + + H+I +P+ AI    E L          Q +   
Sbjct: 395 MNSQLELAIGQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKITNNKQHLSTI 454

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------- 100
             ++   L+ +      +      I +      +   +   + +                
Sbjct: 455 LRNSKHLLELINNILDLSKIEAEKIAVEQAPLNVVRLMHDIESIIEPLAQQKKLKLSINY 514

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           Q+              +IL+N+   A     +G            E +F ++ +G     
Sbjct: 515 QLPLPHTINSDETRLKQILINIASNAVKFTEQGHVSITVHYLPSQELMFVIQDSGIGMVE 574

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +   ++                   +       LA      +  +   D     +  +
Sbjct: 575 SQIK-RLFTPFEQADATTTRRFGGTGLGLCISKNLAQRLGGDITVKSELDVGSCFTITI 632


>gi|27375368|ref|NP_766897.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27348504|dbj|BAC45522.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 636

 Score =  114 bits (284), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLEL----LDEVGIE--------DEVMQLIRLSSMSAIIRLK 65
           L + I H++  P+ AI  S E     L     +          V+   R +S        
Sbjct: 413 LSASIAHEVNQPLAAIVTSGEAGLRWLRRDVPDLKEVATTIGHVVAQGRRASEIVTRIRT 472

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLN 121
           F++ A      +     + +   ++   +A D    +               +  ++L+N
Sbjct: 473 FLKKAAPQQDLLQIGEVIEEATALVARELAKDDVALIVEPQHGLPPVRGDRIQLQQVLVN 532

Query: 122 LFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           L + A  ++       +    +          +++ +G     P+   ++ D    +   
Sbjct: 533 LLINASQAMSGRPGSRVITLRAGTVDSETLAITVQDSGPGI-PPDDMARLFDPFFTTKDG 591

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           +  RL               L 
Sbjct: 592 GMGMGLAICRTTVEAHGGRLSVVSTPGSGATFHLTLP 628


>gi|326939699|gb|AEA15595.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 357

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 70/232 (30%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNTM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +               +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 240 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           F +    +           +    V  +   ++  +  E  + +       +
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTEFIVCI 351


>gi|320162274|ref|YP_004175499.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319996128|dbj|BAJ64899.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 470

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLC------SRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLI 53
           + +     LS ++  +L        + + H++ +P+  I   + L+      ++E +Q I
Sbjct: 217 LIQAFNQTLSRLE--SLFTTQRRFIADVSHELRTPLTVIKGEVSLMRKMKCGDEESLQSI 274

Query: 54  RLSSMSAIIRLKFM---RLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVS 103
                     +  +     A      +D      D   +                 +   
Sbjct: 275 ESEVDRLSRLVGNLLLLAQAESGRLPLDLKPVEMDTILLEVFQQMRTLAGEKVHLEIVTL 334

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                I       ++LLN+   A    P GG VT+ +  +      ++   G      + 
Sbjct: 335 EQVSLIGDRDRLKQVLLNIVGNAVQYTPAGGVVTLGLTQTDGYARITVSDTGPGIPEEDL 394

Query: 163 --KFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G               +       +   +  ++    +          L 
Sbjct: 395 PYIFERFYRGEKSRTRSQGQASGFGLGLSIAYWIVQVHGGKIDVTSVVGKGTTFIIHLP 453


>gi|288555625|ref|YP_003427560.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4]
 gi|288546785|gb|ADC50668.1| multi-sensor hybrid histidine kinase [Bacillus pseudofirmus OF4]
          Length = 539

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58
           A+            +   + + H++ +P+ +I    +LL +     +  + +  +     
Sbjct: 301 AQAQAEKAHKAK--SDFLAMMSHELRTPLNSILGFSQLLHQDTGTPLSAQQLAKVDKILK 358

Query: 59  SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQ 101
           S    L  +              F     VD    +    + I  +          + ++
Sbjct: 359 SGRHLLTMINDILKLVKLENGKPFIEFQEVDLDAIVQAALREITPYAQLKKLKMNCEDLK 418

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +              ++LLNL   +       G +TIS Q S++    +++  G      
Sbjct: 419 LKSDQIIYSDPVRLQQVLLNLLSNSVKYNREHGNITISYQVSEHTVTVNVEDTGVGISSV 478

Query: 162 EKFTQIVDGNVESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+                 +   I    V  +  E + ++  E            L 
Sbjct: 479 EQSKIFDPFYRTEEFSMEAEGTGIGLSLVKQIVTEMQGKIGVESQLGEGSTFWIELP 535


>gi|254168265|ref|ZP_04875111.1| PAS fold family [Aciduliprofundum boonei T469]
 gi|197622774|gb|EDY35343.1| PAS fold family [Aciduliprofundum boonei T469]
          Length = 1568

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 1    MAKNICFNLSSMD----------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
            +A N+   L S++          L  L+   + HD+ +P+  I   ++L+ E      + 
Sbjct: 1339 LANNMAVALRSLEIQKDLEKAKNLQELMLHIVSHDLKNPLAVIEGYIDLMKEGFDPSYLD 1398

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSW 104
             +      ++ I  K    +    G +D    L D          +        ++ ++ 
Sbjct: 1399 AMQMAVEEASSIIEKARLFSKLGAGKIDEERKLIDLKEEIENVSSLLSHKYPSGKINIAA 1458

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +I       ++  N+   A         V IS+ D        +  +G       + 
Sbjct: 1459 DKIEIYAFPIIKEVFTNIIDNAFKYGA--KNVDISLIDKDENVEIRIADDGPGIPKELRN 1516

Query: 165  TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            T        S      +    V ++   +  ++  E       V    L K
Sbjct: 1517 TIFNAFETLSKKKGSGLGLSIVKMIVEMHDGKVWVEENKPKGSVFVIQLPK 1567


>gi|71736616|ref|YP_272552.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557169|gb|AAZ36380.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 440

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 215 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 271

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 272 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 331

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 332 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 391

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 392 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 430


>gi|329938084|ref|ZP_08287535.1| two component sensor kinase [Streptomyces griseoaurantiacus M045]
 gi|329302573|gb|EGG46463.1| two component sensor kinase [Streptomyces griseoaurantiacus M045]
          Length = 477

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 53/220 (24%), Gaps = 16/220 (7%)

Query: 11  SMDLVALL---CSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSAII 62
                A L    +   H++ +P+ AI   L+L     L +        + +         
Sbjct: 252 RERSAAQLRRFVADASHELRTPLSAIRGYLQLYDRGILTDPDERKRAWERMNGEVDRMGR 311

Query: 63  RLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +  +          +  +             E +          V  S           
Sbjct: 312 LVDELLTLARLDQRPELRLRNVDVSRLVRDAAEDLRAQQPDRPVTVSASGALLVRADESG 371

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             ++L NL     A  P    V +  + S      ++   G      +            
Sbjct: 372 LRQVLGNLVANVRAHTPPDVPVRLDARRSDGTVRLTVADEGPGLPEEDAARMFDRFFRTG 431

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +    V  +   +   +      D  + ++ +L 
Sbjct: 432 SSAGSGLGLAIVQGVIEAHCGDVTATTAPDEGLTVTVVLP 471


>gi|319898866|ref|YP_004158959.1| sensor histidine kinase [Bartonella clarridgeiae 73]
 gi|319402830|emb|CBI76381.1| sensor histidine kinase [Bartonella clarridgeiae 73]
          Length = 854

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 61/243 (25%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           M ++       M  V  L   I HD  + + AI  S + L             +  I+ +
Sbjct: 463 MLEDKIIQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNTHRSSDPAHADLINIKNN 522

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
           +  A   ++ +             +   +    I + I       +           +  
Sbjct: 523 ANRAAALVQQLLAFSRKQTLRPEKVDFTEFLSDIRNLILPLLGNNIQLKIIHGRDLWDVK 582

Query: 115 -----RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKIN 154
                  ++++NL + A  ++                +  +   +          ++   
Sbjct: 583 VDQTSFQRVIMNLVINARDAMLDGGIVTITTNNITKQQSAEFNYAGFVVGEYVQLTISDT 642

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          ++ +    +        +    V  +  +    +  +  +         
Sbjct: 643 GTGISAV-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIVKQTGGYIYCDSQEGEGTTFHIF 701

Query: 213 LEK 215
           L +
Sbjct: 702 LPR 704


>gi|312879863|ref|ZP_07739663.1| integral membrane sensor signal transduction histidine kinase
           [Aminomonas paucivorans DSM 12260]
 gi|310783154|gb|EFQ23552.1| integral membrane sensor signal transduction histidine kinase
           [Aminomonas paucivorans DSM 12260]
          Length = 424

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 16/217 (7%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAII---- 62
            L AL  L + + H+I +P+ ++   L+L    L +    +  ++ + +           
Sbjct: 198 RLAALGELVAGVAHEIRNPLASMRIHLDLLADRLRDRPELEGHLEALGVEMDRLGRTVDQ 257

Query: 63  -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                              +       V       + RV +      +    +     ++
Sbjct: 258 FLAFARPRPPRRERLQPRDLLEWTARMVGSQGSRGNVRVVLEAPPAPLPFWGDEDQLRQL 317

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           LLNL + A  ++  GG +T+ +Q++  E  F+++  G          ++ +  V +  D 
Sbjct: 318 LLNLGLNALKAMEEGGTLTLELQETPEELRFAVEDTGKGIPEK-LVDRVFEPFVTTRPDG 376

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +       +A ++   L              +L +
Sbjct: 377 TGLGLSIAQRIAQDHGGNLSCRTSPG-GTRFILILPR 412


>gi|309791779|ref|ZP_07686267.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308226185|gb|EFO79925.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 861

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 61/247 (24%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRL 55
            + +   L    L     +   + I H++ +P+ AI     +L +   G    + +    
Sbjct: 612 TEELRAALEKAQLADRRKSDFLTGISHELRTPLNAIIGFSTVLIDELDGPLAPMQREDAQ 671

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKR 99
           S       L  +         ++                    L  ++ ++        +
Sbjct: 672 SINRNGRFLLHLINELLDLARIEAGHLDLDLGRVDLAPLVSEVLDTMQGLLRSGQVSLNQ 731

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSL 151
              +        +    +IL NL   A     RG     +    +        +  +  +
Sbjct: 732 NLPADLPAVCADADRIRQILFNLLSNAVKFTERGTITVSANLRDEIGPDGNAQSMVVMHI 791

Query: 152 KINGNLARFPEKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           +  G       +           +         +    V  L   ++  +  E   +   
Sbjct: 792 RDTGIGIPANRQHEIFEEFVQVHDKRLRRRGTGLGLAIVRRLVEAHQGHIWVESSPNEGS 851

Query: 208 VLSALLE 214
             S  L 
Sbjct: 852 TFSFSLP 858


>gi|298530516|ref|ZP_07017918.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509890|gb|EFI33794.1| histidine kinase [Desulfonatronospira thiodismutans ASO3-1]
          Length = 546

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 55/216 (25%), Gaps = 25/216 (11%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED----------EVMQLIRLSSMSAIIRLKFMRLAFG 72
            HD+ +P+G+I    ELL E               ++  L R         L   ++  G
Sbjct: 182 AHDLRNPLGSIKLYAELLQEDMKHQLSETGAGMLDKIQSLSRFMLGMVEDLLDVTKIDSG 241

Query: 73  YTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                             L  +  +  +         +    +      +  +++ NL  
Sbjct: 242 QINLQLENVRPGRVVQDALDPLRMLAREKDISLNCHVLEDLPQVNLDVAKFTQMVTNLLT 301

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH----- 179
            A    P G  V + +       +  +   G      E+  ++      ++         
Sbjct: 302 NAIKYSPSGSTVDVRLYTRDGYLVLDVSDYGQGI-PGEEMDRLFAEYQTTSSRPTQGEGS 360

Query: 180 -DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       L   +   +  +         +  L 
Sbjct: 361 VGLGLAIARRLVEAHDGTIEVQSSQGAGTTFTITLP 396


>gi|242280788|ref|YP_002992917.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123682|gb|ACS81378.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 1375

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + + I     + +  +   + + H+I +P+ +I    +LL    + DE  + + +   S 
Sbjct: 856  LEQAILRTEEANEAKSAFLASMSHEIRTPLNSILGVADLLKNTDLSDEQGEYVNIFESSG 915

Query: 61   IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSW 104
             I        +  +      V       D+ Q  E  + +              R +   
Sbjct: 916  EILLTIINDILDFSKIEANHVKLENIPVDLLQETESLMQLQATAASSRHVELVMRYKPDV 975

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160
                +  S    +ILLN+   A      G    +  +  +    +   F++   G     
Sbjct: 976  PEIVLGDSTRIRQILLNILANAVKFTSSGEVSIVVSRSPESNSTDNITFTISDTGIGI-A 1034

Query: 161  PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PEK   I +                 +       LA      +               L 
Sbjct: 1035 PEKLDSIFEPFSQADSSTTRKYGGSGLGLSISRKLAELMGGTITASSTPGKGSTFMVTLP 1094


>gi|197118607|ref|YP_002139034.1| PAS/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197087967|gb|ACH39238.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 796

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 58/234 (24%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLK 65
             M+ +  L   + HD  + +  I    +L    ++E       +Q +  +   +   ++
Sbjct: 425 QKMESIGQLAGGVAHDFNNMLSVIMGYAQLCQIEVEENSSLWLYLQEVVKAGERSRDMVR 484

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDLSRERAKI 118
            +             + L       E               +  +          +  +I
Sbjct: 485 KLLAFSRKEIISPRAVDLNIHCIETEKTLSRLIGEEIKLNFIPATTLWTVKIDPSQVDQI 544

Query: 119 LLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L+NL + A  ++P G                               ++   G      E 
Sbjct: 545 LMNLAVNARDAMPEGGCLTISTENATVDEAFCDYRLDARPGEYACLTVADTGFGM-DREL 603

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +    +        +    V  +  +N   L  +            L +
Sbjct: 604 TKRIFEPFFTTKDVGKGTGLGLATVYGIVTQNGGFLDVDSEPGEGTSFRIYLPR 657


>gi|160888865|ref|ZP_02069868.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
 gi|156861764|gb|EDO55195.1| hypothetical protein BACUNI_01285 [Bacteroides uniformis ATCC 8492]
          Length = 623

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 60/236 (25%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50
           + K     + + +       L +   + + H+I +P+ AI     LL   +     ++ +
Sbjct: 383 LKKTEAMLIQAKEKAEEADRLKSAFLANMSHEIRTPLNAIIGFSSLLHYVENEQEREQYI 442

Query: 51  QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            LI  ++   +  +             + L   +    + +       +           
Sbjct: 443 SLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPAGVKLFA 502

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
              +  G+         +IL N    A  +  +G        D+      S+   G    
Sbjct: 503 RYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGHIEVYYETDTDG-IRISVSDTGCGIP 561

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +            +      +       +  +    +  +         +  L 
Sbjct: 562 PDKLGMIFERFEKVDSFAQGAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELP 617


>gi|86750706|ref|YP_487202.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573734|gb|ABD08291.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 926

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 69/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M         S  L A+  L   + HD  + +  I+ + E+L +   +   +  I     
Sbjct: 523 MRATEHRLHQSQKLEAIGQLTGGVAHDFNNMLTVINGTAEILLDELADRPDLCSIARMIE 582

Query: 59  S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R       ++D    + + +Q+++  I     V+V    +   
Sbjct: 583 QAAGRGADLTRQLLAFARRQPLQPRNIDVNAIVLNTQQLLKATIGEHIDVEVRLAQDVDA 642

Query: 111 LSRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLK 152
              + +++   L      A  ++P GGK                           + ++ 
Sbjct: 643 ARVDPSQLSSALLNLAVNARDAMPNGGKLMLETADVVLDAAYGQHNPDVQPGRYVMIAVS 702

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      E   ++ +    +        +    V     ++   +     + H   L 
Sbjct: 703 DTGTGI-PAELCDKVFEPFFTTKSAGQGTGLGLSMVYGFVKQSGGHINIYSEEGHGTTLK 761

Query: 211 ALLE 214
             L 
Sbjct: 762 LYLP 765


>gi|77458389|ref|YP_347894.1| multi-sensor Signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
 gi|17980436|gb|AAL50631.1|AF418994_1 bacteriophytochrome [Pseudomonas fluorescens]
 gi|77382392|gb|ABA73905.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens Pf0-1]
          Length = 745

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 67/237 (28%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           +A+ +     ++     L + + HD+ +P+  I     ++      +       +     
Sbjct: 507 LARQVRREQEAVRARDELVAVVSHDLRNPMTVISMLCGMMQKAFSSDGPHTSRRISTAID 566

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRV 100
           +   A  R+  +      T  +D+       +++    +  +                  
Sbjct: 567 TMQQAAGRMNTLLEDLLDTSKIDAGRYTIAPQKLDVAQMFEEAQSLLAPLALDKDISISF 626

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++L NL   A    PR G V +  +   ++ +F+++ +G     
Sbjct: 627 EADPDLSIHADPERLFQVLSNLVGNAIKFTPRLGTVDVYAKSVGDDIVFTVRDSGEGIPK 686

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         E       +  Y    +   +  +++ E            + +
Sbjct: 687 DHLPHVFDRYWTVKEGNPTGTGLGLYITQGIVEAHGGQIVAESEPGQGSEFRFTVPR 743


>gi|13473203|ref|NP_104770.1| hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
 gi|14023951|dbj|BAB50556.1| Hybrid sensory histidine kinase [Mesorhizobium loti MAFF303099]
          Length = 1391

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 58/247 (23%), Gaps = 34/247 (13%)

Query: 3    KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
            K     LS     A+L         + + H+I +P+  +    ELL +  ++ +      
Sbjct: 820  KMREAELSEARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTD 879

Query: 55   LSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----- 98
            +   S                             +    + D+  ++             
Sbjct: 880  IIVKSGNALLTIINDILDFSKIDAGQMVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIV 939

Query: 99   RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKING 155
            RV+       +       +I+ NL   A      G     VT     +      S+   G
Sbjct: 940  RVEPRLESLFVGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTRLTISVTDTG 999

Query: 156  NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                  +        +          +   +       L       +  E  +       
Sbjct: 1000 IGIPEEKLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGTIGVESAEGKGSTFW 1059

Query: 209  LSALLEK 215
             +  L +
Sbjct: 1060 FTVTLPR 1066


>gi|154244154|ref|YP_001415112.1| histidine kinase [Xanthobacter autotrophicus Py2]
 gi|154158239|gb|ABS65455.1| histidine kinase [Xanthobacter autotrophicus Py2]
          Length = 510

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 68/234 (29%), Gaps = 24/234 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +++        + A   +   H++ +P+ ++   +E L      +    +  + ++   +
Sbjct: 263 RDLTQQRRVEQMRADFVANASHELRTPLASLSGFIETLQGPARNDAPARERFLAIMAAQA 322

Query: 58  MSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110
                 +  +          +      +   G +  V +    + +   V+    K    
Sbjct: 323 RRMSRLIDDLLSLSRIELNAHVRPQTKVDLGGILAHVCDTLSPLARDRGVTLDQVKDAVP 382

Query: 111 -----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   E  ++  NL   A      G ++ + +       + S++  G     PE   
Sbjct: 383 LEVLGDRDELIRLFENLVENALKYGAPGKRIEVRLFRENGTAVVSIRDFGPGI-PPEHLP 441

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           ++ +                 +    V  +   ++ RL  + +       S  L
Sbjct: 442 RLTERFYRVDVAASRDQGGTGLGLAIVKHIVARHRGRLGIDSVLGEGATFSVRL 495


>gi|331084797|ref|ZP_08333885.1| hypothetical protein HMPREF0987_00188 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410891|gb|EGG90313.1| hypothetical protein HMPREF0987_00188 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 358

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 63/213 (29%), Gaps = 17/213 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S + H+I +P+  I N+ ELL       +  +   +   +     + +            
Sbjct: 139 SNVSHEIKTPLAIIQNNAELLCMETEPKKQKEYAEIIFQTTKRLSELISNILKLNKLEKQ 198

Query: 80  LIGLGDIEQ----------VIEDFIAVDKRVQVSWTGEKIDLSRE----RAKILLNLFMV 125
            I     E           +  + I   K ++     E              +  NL   
Sbjct: 199 AIVPMTEEYDLCGQLAECALNYEAIWEKKGIEFDADMEDHVKITADASLMELVWNNLLSN 258

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQ 182
           A      GG++ ++    + +   S++ NG           F +   G+    +  + + 
Sbjct: 259 AVKFTEPGGRIKLTEWSGEKQICVSVEDNGCGMSEETQKHIFEKFYQGDTSHAMAGNGLG 318

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               + +   N  R+  E         + L+ K
Sbjct: 319 LALAMRVLQLNDYRIEVESSPGSGSKFTVLIPK 351


>gi|313673519|ref|YP_004051630.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940275|gb|ADR19467.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 717

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 72/213 (33%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           + +R+ H+I +P+  I  + E        L++  +   +++ ++          K +   
Sbjct: 497 IATRMAHEIKNPLTPIKLNAERIYKKCRDLEDEKLRSIILEGMQTIINEVSELHKLVTEF 556

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNL 122
             +         +  + ++I   I +           +      +      +  ++L+NL
Sbjct: 557 NDFARLPSLKKEVFYLCELINSVIHMYKDAHPEVIFAISCDGGFKINADKSQIKRVLINL 616

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
              A  ++   G ++I+V + +      +  NG+     E   +I         D   + 
Sbjct: 617 ITNAIHAVKGKGLISINVSEFETYYEIVVADNGHGIPQEELG-KIFLPYYSKKPDGTGLG 675

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              V  +  E+  ++    ++     +   L K
Sbjct: 676 LAIVKKIIDEHNGKIYANSVEGEWTKIIIELPK 708


>gi|289674471|ref|ZP_06495361.1| sensor histidine kinase [Pseudomonas syringae pv. syringae FF5]
          Length = 384

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 159 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 215

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 216 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPFPLRRVSMKRLLT 275

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 276 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 335

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 336 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 374


>gi|229061214|ref|ZP_04198564.1| hypothetical protein bcere0026_33050 [Bacillus cereus AH603]
 gi|228718085|gb|EEL69725.1| hypothetical protein bcere0026_33050 [Bacillus cereus AH603]
          Length = 510

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 334

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
           I          +   +       + +    + ++   I     +     +    +     
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
              S +  ++L+N+   A  ++P GG + I     +N      +   G      E+  ++
Sbjct: 395 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGI-PEERMARL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 500


>gi|256829812|ref|YP_003158540.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578988|gb|ACU90124.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 552

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 76/239 (31%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVG-----IEDEVM 50
           A+     + S  + AL  L + + H++ +P+  I      + +LL+E          E +
Sbjct: 310 AQMNEELIQSSKMAALGKLAAGVAHEVNNPLAVIREKAGWMRDLLEEEDVKASPNFQEFV 369

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQV 102
             +             +    G+   ++ +                +  +    +  +  
Sbjct: 370 DAVDKIEQHVERAGTVVHRMLGFARRMEPVCNDLYINDVLKQTTAFLENEIRFRNIELIW 429

Query: 103 SWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL--KINGNL 157
           +   +   +  +     +++LNLF  A  ++ R G +T+        ++ S+  + +G  
Sbjct: 430 ALNPDLPTIQSDAAQIQQVILNLFNNAIDAIGRNGHITVKTGYEAETDMVSISLRDDGPG 489

Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I D    +    +   +       + ++    +  E           LL 
Sbjct: 490 M-DKEVQRRIFDPFFTTKNVGEGTGLGLSISYSIINKLGGSIRFESEAGKGTEFIILLP 547


>gi|225873257|ref|YP_002754716.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196]
 gi|225793041|gb|ACO33131.1| sensor histidine kinase [Acidobacterium capsulatum ATCC 51196]
          Length = 361

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRL 55
           A+      SS  L+ L  L + I H+I +P+ +I N L LL +      +    + LI  
Sbjct: 85  ARAAETLRSSHKLIELGRLSASIAHEINNPLSSITNLLFLLRQEPGLSPLATGYLDLIES 144

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------I 109
                I   K        + + D +  +  +E+V+  +    ++  +    E        
Sbjct: 145 EMDRVISISKQTLSFSRESSTPDHVSLVELVEEVLFLYRHRVEQKHLEVRREYLPVEAVW 204

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKF 164
               E  ++L NL + A  +  +GG++ I ++        +    ++   G     PE  
Sbjct: 205 GNPGELRQVLSNLIVNAIDASRQGGRLQIRIRKAANGRGDSGIRVTVADTGTGI-PPEVL 263

Query: 165 TQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDH---NVVLSALLE 214
            ++ +    +       +  +    +   +   L             V S  L 
Sbjct: 264 RRLGEPFFTTKGQQGTGLGLWVTRAIVERHGGELRLRSRWGGRRHGTVFSLFLP 317


>gi|148262211|ref|YP_001228917.1| GAF sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146395711|gb|ABQ24344.1| GAF sensor signal transduction histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 780

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 18/232 (7%), Positives = 55/232 (23%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + +     +    L  +  + + I H++  P+ AI      L           +   L  
Sbjct: 547 LCEAQERLIQGERLATIGEMAAGIAHELKGPLVAIGGFARRLANKLPPPSGERECADLIV 606

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--------IAVDKRVQVSWTGEKI 109
              +   K +     ++        L +I ++I D            + ++  ++     
Sbjct: 607 REVLRLEKMLTDILSFSKKTTICYTLCNISEIINDALAVVQLSLKERNIKIHKNFPRNIA 666

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-------IFSLKINGNLARFPE 162
               +  ++      +   +                            +   G      E
Sbjct: 667 TFLGDCQQLKQVFINLFLNAEEAMKNGGNLNIKVAPSVLDGSKAISIKIADTGGGIPL-E 725

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +       +   +  ++         V  + +L 
Sbjct: 726 VLNNIFNPFYTTKDTGTGLGLPIANRIITNHGGKIHINNKPGTGVEFTVILP 777


>gi|327439250|dbj|BAK15615.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 512

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRL----------- 64
             + + H++ +PI +I    E L +     E  ++  + +    +               
Sbjct: 292 FVANVSHELRTPITSIKGFSETLLDGAFNDEQMLLSFLTIIHDESNRIQVLVNDLLELSK 351

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                  L    T   D L+ + D+     +   +   V++      +       +I  N
Sbjct: 352 IERHGFTLDVVPTKLQDILVRVVDLTSAQLENKNMQFDVEIEQDAVILGDVNRLMQIFTN 411

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVD--GNVESTI 176
           L   A A       VT+ +  +    IF +K  G      E    F +            
Sbjct: 412 LINNAIAYSKEETTVTLRISANDQYGIFEVKDEGIGIEKAEISRIFERFYRVDRARSRNS 471

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  L   +  +++ +        +   L 
Sbjct: 472 GGTGLGLSIVKHLIEAHNGKIIVQSEVGKGTSIKVYLP 509


>gi|322419518|ref|YP_004198741.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125905|gb|ADW13465.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 798

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 60/234 (25%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLK 65
             M+ +  L   + HD  + +  +    +L              +Q I  +   +   ++
Sbjct: 425 QKMESIGQLAGGVAHDFNNMLSVMLGYAQLCQLEAAPSTPLWLYLQEIIKAGERSRDMVR 484

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERAKI 118
            +             + L +     E  ++     +V ++               +  +I
Sbjct: 485 QLLAFSRKEIISPRAVNLNEHCLETEKTLSRLIGEEVRFSFAPDPALWLVRIDPSQVDQI 544

Query: 119 LLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L+NL + A  ++P                            +    S+   G      E 
Sbjct: 545 LMNLAVNARDAMPDGGTLTIRTENLDLDEPFCDYRLDAKPGSYVCLSVIDTGTGM-DREL 603

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +    +        +    V  +  +N   +  E            L +
Sbjct: 604 VKRIFEPFFTTKEVGKGTGLGLATVYGIVTQNGGFVDVESEPGQGTAFRIYLPR 657


>gi|148380483|ref|YP_001255024.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153933173|ref|YP_001384707.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936407|ref|YP_001388228.1| putative phosphate regulon sensor protein [Clostridium botulinum A
           str. Hall]
 gi|148289967|emb|CAL84080.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152929217|gb|ABS34717.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152932321|gb|ABS37820.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 569

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   D+    ++ +Q+I   +      +  + 
Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + ++ +        I    +  +
Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIKINIVGEKVPLLIGNKDKYNQ 463

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G V+I  +  K   +F ++  G      E   +I +        
Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTRQDKGNIVFWVEDTGVGI-SEEHLDRIFERFYRVDKA 522

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 523 RSRVEGGTGLGLAIVKHIVLSINGKIEVKSEPKKGTKFIVKIP 565


>gi|116623865|ref|YP_826021.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
 gi|116227027|gb|ABJ85736.1| histidine kinase [Candidatus Solibacter usitatus Ellin6076]
          Length = 1358

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 60/238 (25%), Gaps = 28/238 (11%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            AK+     +      +  + + H++ +P+ AI     LL E  + +     + + + S  
Sbjct: 880  AKDAAEAANRAK--TIFLANMSHELRTPLNAILGFSNLLREGDVSEWQRNDLDIINRSGE 937

Query: 62   IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105
              L  +                     D    + D+  ++     +     +        
Sbjct: 938  HLLSLVDEVLDVAKIEAGRGVLEIAPYDLAGMVRDVMDMMGARAQMKGLALLHADSSGLP 997

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARF 160
                       ++L+NL   A    P               D +    F ++  G     
Sbjct: 998  RYVRADGPRLRQVLINLVGNAIKFTPSGSVTLRLDAGCVDDDGRFSLTFYVEDTGCGV-A 1056

Query: 161  PEKFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +I +        +T     +       L       +  E            + 
Sbjct: 1057 PEDHERIFEPFVQVGPAATKKGSGLGLAITRQLVEMMGGTVSVESTPGKGSRFRVEVP 1114


>gi|325105694|ref|YP_004275348.1| integral membrane sensor signal transduction histidine kinase
           [Pedobacter saltans DSM 12145]
 gi|324974542|gb|ADY53526.1| integral membrane sensor signal transduction histidine kinase
           [Pedobacter saltans DSM 12145]
          Length = 353

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 70/241 (29%), Gaps = 27/241 (11%)

Query: 2   AKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQL 52
           AK     +  +   A+      + + H++ +P+ +I   LE+L++            ++ 
Sbjct: 99  AKEKKIEIDELKREAIFRKEFLTNLSHELKTPLFSIGGYLEVLEDSDLTDVEETQRFLKK 158

Query: 53  IRLSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDK-----R 99
           I  +     I +K +                  D  + + ++ +++E            +
Sbjct: 159 ISNNVDRLSILIKDLDEISKLESGEIPLNIKKFDITVLIKEVLELMELEAEKHHIELLFK 218

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +       +    +  ++L+NL   +       G   ++V +  ++ +  +  NG    
Sbjct: 219 QKYDVPTFVMADRDKIRQVLVNLIGNSIKYGKENGTTFVTVFEMHDQILVEVTDNGIGIE 278

Query: 160 FPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                I    +    V  +   +   +               L+
Sbjct: 279 EKNLKRLFERFFRTDFSRSRNIGGSGLGLAIVKHIVEAHDQAINVRSTPGIGSTFGFTLQ 338

Query: 215 K 215
           K
Sbjct: 339 K 339


>gi|325109621|ref|YP_004270689.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324969889|gb|ADY60667.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 404

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 73/238 (30%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
           A+     L    L AL  + + + H++ +P+  I N+  L    L       E+++LI  
Sbjct: 162 AQLEQRRLKMQKLAALGQMAAGVAHEVNNPLAGIRNAFALFKGNLSPDDENFELLELIDR 221

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKID 110
                   +  M   +  +        L                  + ++ V       +
Sbjct: 222 EIERISSLMHQMYQLYRPSHQAPRQFDLQRTIADVVLLTDPLARKSEVQITVEVNDVHAE 281

Query: 111 LSR----------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +           +  +ILLNL   A  + P  G+V I +  +  E + S+   G     
Sbjct: 282 GAMGPTEVILREGDLKQILLNLVRNAIQASPLKGRVVIELSTTAAEAMISVSDEGTGI-S 340

Query: 161 PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  +++ +    +         +       LA      ++ +         +  + +
Sbjct: 341 QDAASRLFEPFFSTKTGTREGMGLGLPVSRSLAEAMGGTIVIQNKAPQGACATVTVPR 398


>gi|237713960|ref|ZP_04544441.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409131|ref|ZP_06085675.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647394|ref|ZP_06724984.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807933|ref|ZP_06766713.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229446116|gb|EEO51907.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352878|gb|EEZ01974.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637255|gb|EFF55683.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444871|gb|EFG13558.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 420

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 62/232 (26%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +A     ++S+  L +   + + H++ +P+ AI     L+              +I  ++
Sbjct: 179 LAIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASGEEERKMYADIIAENN 238

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +  +            +         L      I      +  V++        
Sbjct: 239 ERLLRLVNDIFDLSQIESGTVDFVYKEFDANDLLRELDGIFKAKLNNSPVELICEAHVQP 298

Query: 111 LSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +          ++L NL   A      G        +   E  F +   G      E   
Sbjct: 299 IMMYSERERIIQVLSNLLHNAMKFTASGEIRFGCRLEGMEEVYFFVSDTGIGI-PEEDQK 357

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I    +  +  +    +       +       L  +   +     S +L +
Sbjct: 358 KIFSRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLPR 409


>gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
 gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
          Length = 1378

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 58/239 (24%), Gaps = 31/239 (12%)

Query: 5   ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56
                 + +L  L        S I H+  +P+  I   +E L +     +  + + + + 
Sbjct: 328 QAQQRRAEELAELDRAKTTFFSNISHEFRTPLTLIMGPVEELRDRLTDADPGLREELEVV 387

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQ 101
             + +                      +   VD     G++  V    +       +   
Sbjct: 388 HRNGLRLGKLVNTLLDFSRIEAGRMQAHYEPVDLARVTGELASVFRSAVDKAGLDFRVHC 447

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          K++LNL   A      G        +       ++   G      
Sbjct: 448 SPLPEPVFVDRSMWEKVVLNLLSNALKFTFDGSIRVAVGVEEGAAV-VTVDDTGIGVAAK 506

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ +           + +   I    V  L   +   +     +      +  L 
Sbjct: 507 E-MPRLFERFHRIENARSRSNEGSGIGLALVKELVGLHGGEISATSAEGEGTRFTIRLP 564


>gi|84386371|ref|ZP_00989399.1| osmolarity sensor protein EnvZ [Vibrio splendidus 12B01]
 gi|84378795|gb|EAP95650.1| osmolarity sensor protein EnvZ [Vibrio splendidus 12B01]
          Length = 420

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/209 (10%), Positives = 66/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 209 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 268

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLFMVAHA 128
               +     +  +       E    V     +  + +          + + NL + A  
Sbjct: 269 VDRDSFQEVFVDDIAREVSSSEGGYEVQIETDIPESMKPALGNPIAMKRAVSNLVVNALR 328

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 KV+  +         +++ NG      +    F     G+     +   +    
Sbjct: 329 YGNGWVKVSTGMTADNKLAWVTVEDNGPGIPQDQVGKLFEPFTRGDTARGSEGTGLGLAI 388

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  +++  ++     +  +       
Sbjct: 389 VKRIVSQHQGAVVVNNRSEGGLKAQISFP 417


>gi|332670570|ref|YP_004453578.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas fimi ATCC 484]
 gi|332339608|gb|AEE46191.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas fimi ATCC 484]
          Length = 367

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 20/225 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
            +  L   L + + H++ +P+  I   LE +++    ++   + ++R  +       + +
Sbjct: 141 EAQRLRGRLLADLAHEVRTPVATITGYLEAVEDGVQPLDATTLAVLREQADRLTRLAQDL 200

Query: 68  RLAFG-YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRER 115
                   G V           ++E  +   +   ++                       
Sbjct: 201 AAVTHAEAGDVVLDTAPTRPADIVEAAVLAAQERALARGIALSGAAEPGLPSVRADRHRM 260

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNV 172
           +++L NL   A    P GG++T+S           +   G        P  F +      
Sbjct: 261 SQVLDNLLANALRHTPSGGQITVSAARGDGGVRLVVTDTGEGIAAEHLPHVFDRFYRVGT 320

Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                     I       L   +   +             +  L 
Sbjct: 321 ARDRASGGSGIGLAISKALVEAHGGSIRAASAGPGRGATFTVTLP 365


>gi|309789804|ref|ZP_07684383.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308228108|gb|EFO81757.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 381

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 74/240 (30%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMD------LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQL 52
           +++++     ++D      L   L + + H++ +P+  I   +E L +       E   L
Sbjct: 134 LSRSVNQLADALDQTEQRRLA--LLADVTHELRTPLATIGGYMEGLLDGVVQPSHETFNL 191

Query: 53  IRLSSMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   S      ++ +            +       V  +  +    + I     V   ++
Sbjct: 192 ILHESNRLQRLIEDLELLSRVEAGQLPVVARSVNLVHLIEAICVQFEPIFSANQVRMGIE 251

Query: 102 VSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-- 158
           V      +    +R  +IL+NL   A+   P GG+V +    + ++    +  +G     
Sbjct: 252 VPLRLPPVWADPDRLDQILINLLSNAYRYTPAGGEVVLRAWATTDKMTVEVADSGVGIAA 311

Query: 159 -RFPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              P  F +    +           I    V  L       +           V +  L 
Sbjct: 312 EHLPHVFERFYRVDKSRARQSGGSGIGLAIVRHLVDAQGGDISVWSAGKGQGTVFTFTLP 371


>gi|302188959|ref|ZP_07265632.1| sensor histidine kinase [Pseudomonas syringae pv. syringae 642]
 gi|330972159|gb|EGH72225.1| sensor histidine kinase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 436

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPFPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426


>gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 1290

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 53/217 (24%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL---------- 69
            + + H++ SP+  I     LL    +          +          +            
Sbjct: 927  AIVSHELRSPLNPILGWSTLLQTQKLNPAKTAQALNAIARNARLQAELIEDLLDLSRILR 986

Query: 70   -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLF 123
                     T    ++    +  ++  +  ++            +   S    +++ NL 
Sbjct: 987  GKLSLNVFPTDLASTIQSAMETVRLAAEAKSIQIHTMFEPDIGLVLGDSSRLQQVMWNLL 1046

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178
              A    P GG V I ++    +    +   G             + +  +         
Sbjct: 1047 SNAIKFTPEGGLVDIQLERCGAQAQIIVSDTGKGIDPDFLPYIFEYFRQENSATTRKFGG 1106

Query: 179  HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
              +    V  L   +   +  E   +      +  L 
Sbjct: 1107 LGLGLAIVHHLVELHGGTVEAESLGEGQGATFTVKLP 1143



 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 64/234 (27%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            +     L+ +D    +  S + H+  +P+  +   +E   +   + +    + L   +A
Sbjct: 341 ERRRAEQLAELDRAKTVFFSNVSHEFRTPLTLMLGPVEEALQATQDAQQRDRLELIHRNA 400

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWT 105
           +   K +     ++              D  +   D+  V E  IA              
Sbjct: 401 LRLQKLVNTLLDFSRIEAGRIEAVYQPTDLAMLTTDLAGVFESAIARAGLHLRVDCPPLP 460

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      KI+LNL   A      G    I    ++      ++  G      E   
Sbjct: 461 EPTYVDREMWEKIVLNLLSNAFKYTFEGEIAVILRSRNEQ-IELEVRDTGIGIPAEELPQ 519

Query: 163 KFTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +     G    T +   I    V  L   +   +    I D        + 
Sbjct: 520 IFERFHRVQGARGRTYEGSGIGLSLVQELVRLHDGTISASSIVDQGTSFIVSIP 573


>gi|300087390|ref|YP_003757912.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527123|gb|ADJ25591.1| integral membrane sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 479

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 64/237 (27%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA  +  +  S      L + + H++ +P+  I+ +++ + +     +++ +  I+  S+
Sbjct: 240 MASALEKSEQSRK---RLLADVAHELRTPLTVINGTVDAMMDGVLPTDEQQLGTIKEESL 296

Query: 59  SAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQ----VIEDFIAVDKRVQVSWTG 106
                +  +R                +D    +    +    + E      +        
Sbjct: 297 LLTRLIADLRDLSLAEAGQLKLDKSVIDLGDLVCRKLEQFRLLAETRNIRLECHNPGGLP 356

Query: 107 EKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     ++L NL   A    P       ++T +  D       ++   G      +
Sbjct: 357 SVNGDWVRLEQVLANLLSNALRHTPAGGEVSVRLTEASLDGSPAVAVAVSDTGEGMTPED 416

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                  +    V  +   +  R+  E         +  L 
Sbjct: 417 LKHIFDRFYRVEDSRSRDEGGAGLGLAIVKQMVTAHSGRVSVESAPGRGTTFTVTLP 473


>gi|225017546|ref|ZP_03706738.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum
           DSM 5476]
 gi|224949696|gb|EEG30905.1| hypothetical protein CLOSTMETH_01473 [Clostridium methylpentosum
           DSM 5476]
          Length = 487

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 61/234 (26%), Gaps = 25/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           MA  I    +S  L     S + H++ +P+ AI    E +      ++    + M++I  
Sbjct: 235 MADEIS---NSEKLKNEFISSVSHELRTPLTAIQGWSETIMSMGVGDLETTKKGMRVISN 291

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      ++ +                      +    +    +             + 
Sbjct: 292 ETGRLSDMVEELLDFSRIQDGRFKLNKDRMDILAELEEAVLIYTEHAHREGKQFIYHDIE 351

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++ +N+   A      G  VT+  +      I ++   G      + 
Sbjct: 352 MLPFIFGDRNRIRQVFINIIDNALKYSDAGDTVTVKAEADDANIIITVSDTGCGIAEKDL 411

Query: 164 F---TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    N         I     + +   +   L  +  +     ++  L 
Sbjct: 412 PLVKEKFYKANNTRR--GSGIGLAVAVEIVSMHDGALEIDSEEGVGTTVTITLP 463


>gi|196047633|ref|ZP_03114840.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|229183752|ref|ZP_04310970.1| hypothetical protein bcere0004_13210 [Bacillus cereus BGSC 6E1]
 gi|196021547|gb|EDX60247.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|228599720|gb|EEK57322.1| hypothetical protein bcere0004_13210 [Bacillus cereus BGSC 6E1]
          Length = 420

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|196036817|ref|ZP_03104206.1| sensor histidine kinase [Bacillus cereus W]
 gi|195990546|gb|EDX54525.1| sensor histidine kinase [Bacillus cereus W]
          Length = 420

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|165872676|ref|ZP_02217306.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167641634|ref|ZP_02399880.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|177651570|ref|ZP_02934359.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190568008|ref|ZP_03020918.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|196039052|ref|ZP_03106359.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|225863420|ref|YP_002748798.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|227815696|ref|YP_002815705.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|228926587|ref|ZP_04089657.1| hypothetical protein bthur0010_13040 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228932842|ref|ZP_04095710.1| hypothetical protein bthur0009_13150 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228945156|ref|ZP_04107513.1| hypothetical protein bthur0007_13200 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229090515|ref|ZP_04221752.1| hypothetical protein bcere0021_13410 [Bacillus cereus Rock3-42]
 gi|229121099|ref|ZP_04250337.1| hypothetical protein bcere0016_14050 [Bacillus cereus 95/8201]
 gi|254721236|ref|ZP_05183026.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254733795|ref|ZP_05191509.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254753903|ref|ZP_05205938.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254758999|ref|ZP_05211026.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|301053096|ref|YP_003791307.1| sporulation kinase [Bacillus anthracis CI]
 gi|164711620|gb|EDR17167.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167510427|gb|EDR85827.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|172082848|gb|EDT67911.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190560742|gb|EDV14717.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|196030197|gb|EDX68797.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|225789681|gb|ACO29898.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|227007235|gb|ACP16978.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|228662354|gb|EEL17956.1| hypothetical protein bcere0016_14050 [Bacillus cereus 95/8201]
 gi|228692819|gb|EEL46541.1| hypothetical protein bcere0021_13410 [Bacillus cereus Rock3-42]
 gi|228814517|gb|EEM60781.1| hypothetical protein bthur0007_13200 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228826818|gb|EEM72584.1| hypothetical protein bthur0009_13150 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228833070|gb|EEM78637.1| hypothetical protein bthur0010_13040 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|300375265|gb|ADK04169.1| sporulation kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 420

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|118477014|ref|YP_894165.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118416239|gb|ABK84658.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 426

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 192 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 251

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 252 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 311

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 312 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 370

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 371 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 415


>gi|49477242|ref|YP_035674.1| sporulation kinase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49328798|gb|AAT59444.1| sporulation kinase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 420

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|52143890|ref|YP_082938.1| sensor histidine kinase, C-terminal region; sporulation kinase
           [Bacillus cereus E33L]
 gi|51977359|gb|AAU18909.1| sensor histidine kinase, C-terminal region; possible sporulation
           kinase [Bacillus cereus E33L]
          Length = 420

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|153835679|ref|ZP_01988346.1| nitrogen regulation protein NtrB [Vibrio harveyi HY01]
 gi|269959433|ref|ZP_06173816.1| nitrogen regulation protein rtrB (nitrogen regulator II, NRII),
           sensor kinase [Vibrio harveyi 1DA3]
 gi|148867695|gb|EDL66965.1| nitrogen regulation protein NtrB [Vibrio harveyi HY01]
 gi|269835870|gb|EEZ89946.1| nitrogen regulation protein rtrB (nitrogen regulator II, NRII),
           sensor kinase [Vibrio harveyi 1DA3]
          Length = 348

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+++  +  + +   +    A
Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 176 DRLRALVDRLLGPQKPGKKTQENLHQVLEKVRQLVELESQHSVVIERDYDPSLPEILMDA 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  Q  K      +  NG     
Sbjct: 236 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGQRCKLAARVEITDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHSGKIDVESWPGH-TTFTIYLP 347


>gi|119490861|ref|ZP_01623144.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106]
 gi|119453679|gb|EAW34838.1| Adenylate/Guanylate Cyclase [Lyngbya sp. PCC 8106]
          Length = 1161

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +     L    L       I H+  +P+  +   LE           ++  I     + 
Sbjct: 513 RQQAERLLEVDRLKTEFFQNISHEFRTPLTLMIGPLEAAVNQTQDLPYEQAKIALRNSRR 572

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +       +   +F       +     L+                K +++  + +  +  
Sbjct: 573 LLRLVNQLLDLQRFDAGRMQPSFRPCDLVEFCRQTVESFQPYCEKKGIKLEISLQLCESI 632

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                   K+L NL   A    P  G + IS++ S +     +K  G      +      
Sbjct: 633 YLDLERFDKVLYNLLSNAMKFTPENGVIYISLEPSGSYCRLQVKDTGIGIHREQIPHLFE 692

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +G+   + +   +    V  L   +  ++  + +       +  L+
Sbjct: 693 RFRQAEGSTNRSYEGSGLGLALVKELVDLHHGQVSVDSVYGEGTTFTVWLQ 743


>gi|91224955|ref|ZP_01260214.1| nitrogen regulation protein [Vibrio alginolyticus 12G01]
 gi|91190201|gb|EAS76471.1| nitrogen regulation protein [Vibrio alginolyticus 12G01]
          Length = 336

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+++  E  + +   +    A
Sbjct: 105 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPEPSLTEYTHIIIEQA 163

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 164 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIIIERDYDPSLPEILMDT 223

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  +  K      +  NG     
Sbjct: 224 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 282

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 283 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 335


>gi|28867560|ref|NP_790179.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213971030|ref|ZP_03399151.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato T1]
 gi|28850795|gb|AAO53874.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213924266|gb|EEB57840.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. tomato T1]
          Length = 440

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 215 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 271

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 272 DQFLAFIRDGRDEEIEEVDLGDLVRDVVAPFNNAEGSIRLCLEPIPPFPLRRVSMKRLLT 331

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 332 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 391

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 392 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 430


>gi|325264282|ref|ZP_08131013.1| sensor histidine kinase [Clostridium sp. D5]
 gi|324030353|gb|EGB91637.1| sensor histidine kinase [Clostridium sp. D5]
          Length = 243

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 62/209 (29%), Gaps = 14/209 (6%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
            S I H+I +P+  + +SL++++    E       R +        + +     +     
Sbjct: 35  VSAIAHEIRNPLTLVSSSLQVMEIQHPEVRDFPHWRQTIDDVEFMCQLLNELSTFNNGDT 94

Query: 79  SLIGLGDIEQVIEDF-------------IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
               +  IE+++++                       +  G+      +  ++ LNL   
Sbjct: 95  LHYSVFSIERLLKNIAVSFAISLDSEDSDIEFTSSIPTGLGDYTGDKVKLEEVFLNLLRN 154

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A  S+   G++  S    ++      +  G      E    I +           +    
Sbjct: 155 AKESITGEGRIHFSASRHEDSLTIQCQDTGCGI-TEEIIDYIFEPFKTYKEGGTGLGLSL 213

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +   +  +   D     + +L 
Sbjct: 214 SKRIIDSHGGSISVDSKVDEGSTFTIILP 242


>gi|284046820|ref|YP_003397160.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
 gi|283951041|gb|ADB53785.1| multi-sensor signal transduction histidine kinase [Conexibacter
           woesei DSM 14684]
          Length = 625

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLS 56
           + +     +  +     + + H++ +P+ AI   +EL+           +   +Q++  +
Sbjct: 361 REVTGEREAERVKEEFFALVSHELRTPLTAILGYVELVLGEDGATIDEEQHRYLQIVERN 420

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWT 105
           +   +  +  +  A            GSVD      +  +               Q++  
Sbjct: 421 AQRLLRLVGDLLFAAQVESGALLLEPGSVDLPRVTLEAVEAARPRAEDAGITLTAQIAPL 480

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A++L NL   A    P GG+V + +  +  E    +   G      E   
Sbjct: 481 VPCVGDRDRLAQVLDNLISNALKFTPSGGQVGVRLSAADGEARIDISDTGVGVPAEE-HA 539

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D            +    +    V  +   +   +  +         +  L 
Sbjct: 540 RLFDRFFRASNATTRAVPGVGLGLMIVRAIVAAHGGTIGVDSEVGVGTTFTVRLP 594


>gi|241664111|ref|YP_002982471.1| histidine kinase [Ralstonia pickettii 12D]
 gi|240866138|gb|ACS63799.1| histidine kinase [Ralstonia pickettii 12D]
          Length = 535

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 67/237 (28%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56
           + + +       +L     S   H+  +P+G I    + L  +        L        
Sbjct: 296 LQETLDKERRMAELQRNFVSMASHEFRTPLGVIDGQAQRLMRMRDALPPEALEERCGKIR 355

Query: 57  --SMSAIIRLKFMRLAFGYT-------------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                    +  +  +  +                   L  + ++ +       +D+ V+
Sbjct: 356 AAVQRMTHLMDHLLDSSHWLDSTTPAAMRRTDLPLAALLHEVCEMHRESTPSARIDECVE 415

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   +   NL   A    P G  V++ ++   +    +++  G      
Sbjct: 416 TDEPNTFFGDARLLFQAFSNLVGNAVKYSPPGTPVSVRMRSDADGVSVTVEDRGMGIPER 475

Query: 162 EK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F + V G   +      +  Y V L+   ++  +     +      +  L +
Sbjct: 476 DIERLFERYVRGGNVAGTVGAGVGLYLVKLVVELHRGTITVTSEEGKGSTFNVFLPR 532


>gi|189424715|ref|YP_001951892.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189420974|gb|ACD95372.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 549

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 73/235 (31%), Gaps = 24/235 (10%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55
           K +   L  S  L AL  L +R+ H+I +P+ AI  S++LL E       E  ++ ++  
Sbjct: 302 KQMELALKRSDRLAALGELSARMAHEIRNPLAAISGSVQLLAEHGSLRDHESRLLAIVMR 361

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-------QVIEDFIAVDKRVQVSWTGEK 108
            S      +         T        L  +             F  V   + +S     
Sbjct: 362 ESDRLNGLITDFLAYARPTPPRFERFNLCHLVRDLQALLMADSRFDKVRLVLDLSEDLTA 421

Query: 109 IDLSRERAKILLNLFMVAHASLPRG---------GKVTISVQDSKNENIFSLKINGNLAR 159
                +  ++LLNL   A  ++  G            T     + +     +   G    
Sbjct: 422 WADRGQLQQVLLNLLHNAAEAMQDGGEILVSADLQSGTDDAGRAFSLLCLKILDQGCGM- 480

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    + +    +      +    V  +   +   +  +  D+   +++ LL 
Sbjct: 481 DEDTCRHLFEPFWTTKPAGTGLGLATVYRIVEGHGGMIQADPRDEGGTMMTLLLP 535


>gi|189346303|ref|YP_001942832.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
 gi|189340450|gb|ACD89853.1| multi-sensor signal transduction histidine kinase [Chlorobium
           limicola DSM 245]
          Length = 590

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF------ 66
             S + H++ +P+ +I    E L E  + D       +Q+I   S      +        
Sbjct: 367 FVSSVSHELRTPLTSIKGYTETLLEGAMHDPEHATAFLQIILKESEQLTALVNDVLDLSR 426

Query: 67  --MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAKILL 120
                   +   VD    +    +++   I   +    R       E    +     ++ 
Sbjct: 427 IESGKIEYHFAPVDLCRVIEKTVEMLTPAIEKKQIRLERHYQDDIPEVTADAGYLEIVVR 486

Query: 121 NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           NL   A   +     +V ISV  +  +    ++ NG      +   +I +          
Sbjct: 487 NLLDNAVKYVDDRNGRVRISVFRTGMDVRMEIEDNGIGIAPADL-DRIFERFYRVDKARS 545

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T+    +    V  +   +K  +      +   V S  L 
Sbjct: 546 RTLGGTGLGLAIVKHIVIGHKGHIEVRSRINQGSVFSITLP 586


>gi|262196409|ref|YP_003267618.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262079756|gb|ACY15725.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 440

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 61/210 (29%), Gaps = 9/210 (4%)

Query: 14  LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFM 67
           L  L  + + + H+I +P+ ++    +LL E   ED         +   ++        +
Sbjct: 232 LATLGEMSAVLAHEIRNPLASLKGHAQLLAEALPEDGRPKAKADRVVAEAIRLEQLTSDL 291

Query: 68  RLAFGY--TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                            L       E      +                  ++L NL   
Sbjct: 292 LQFVRTGEIQPRPVEPALLARTAAAEQPAGRVEVDAAQAPASARLDPDRMHEVLANLLRN 351

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYY 185
           A  + P    V + V  +  + IF ++ +G+     E+  +I +      +    +    
Sbjct: 352 AIQASPADAAVHLRVAAAGADLIFEVRDHGDGIAAGEE-ERIFEPFHTKRVHGTGLGLAV 410

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +   +      +   +L   + +
Sbjct: 411 ARRVVELHGGSITASTHPEGGALLRVRVPR 440


>gi|239907937|ref|YP_002954678.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797803|dbj|BAH76792.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 735

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 59/225 (26%), Gaps = 28/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A L S + H+I +P+  I    ELL E  I     + +   + S  +  + +     ++ 
Sbjct: 348 AFLAS-MSHEIRTPMNVILGMAELLAETSISSSQRRYLEGIAGSGRMLSQLLSDILDFSQ 406

Query: 76  SVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWTGEKIDLSRERAKIL 119
                + L                                   S     +       ++L
Sbjct: 407 IEADRVALFPEVFDPAALAREVCGLAGEAAAGKGLDLQVHTDPSLPDRLVADPLRVRQVL 466

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           LNL   A      G     +   S        +FS++ +G     PE   +I D      
Sbjct: 467 LNLVWNAVKYTQSGRITVSATPLSDPAGQGFVLFSVRDSGPGI-APEAMARIFDPFSQAD 525

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       LA      ++ E         S  L 
Sbjct: 526 AAAHRRQGGAGLGLSISRALARLMGGDVVAESAPGAGSCFSFTLP 570


>gi|229821646|ref|YP_002883172.1| histidine kinase [Beutenbergia cavernae DSM 12333]
 gi|229567559|gb|ACQ81410.1| histidine kinase [Beutenbergia cavernae DSM 12333]
          Length = 517

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 60/207 (28%), Gaps = 14/207 (6%)

Query: 22  ICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFG 72
           + H++ +P+  +   LEL+D  +     +   L           +  +       R  F 
Sbjct: 285 VGHELRTPLTVVRGHLELMDPADPEDAAQTRALAMDELDRMYGLVDDLVTLARAERPDFV 344

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
               VD  + + ++            R+     G      +   + LL L   A      
Sbjct: 345 RRREVDVAVLVDEVLAKARPLGERRWRLDALPEGTAELDPQRLTQALLQLASNAVRFSDD 404

Query: 133 GGKVTISVQDSKNEN-IFSLKINGNLARFPE---KFTQIVDGNVES-TIDSHDIQFYYVI 187
           G  V +    S +      ++  G      E    F +   G+      D   +    V 
Sbjct: 405 GSTVGLGGAWSGDGALELWVRDEGIGIAEEEQAHVFQRFARGSTARARGDGSGLGLAIVA 464

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
            +AH +   +  +        ++  + 
Sbjct: 465 SIAHAHGGSVTLDSAPGRGTTVTLRIP 491


>gi|228984636|ref|ZP_04144810.1| hypothetical protein bthur0001_13390 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775092|gb|EEM23484.1| hypothetical protein bthur0001_13390 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 423

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKISIQIASYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|229069534|ref|ZP_04202823.1| hypothetical protein bcere0025_17390 [Bacillus cereus F65185]
 gi|228713673|gb|EEL65559.1| hypothetical protein bcere0025_17390 [Bacillus cereus F65185]
          Length = 351

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDDNLSEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +               +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYIPERVSYRLDQQLKQIVLNSEPLWAEKEIELELDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 234 HVIADQESMSQVWINLIHNSIKFTPSGGTITIQLKEHETVVEVRIRDSGIGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  +         + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVEGEEGKGTEFIVRMP 346


>gi|289581708|ref|YP_003480174.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289531261|gb|ADD05612.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 477

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 56/216 (25%), Gaps = 9/216 (4%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                  +  L +     + HD+  P+ A    LEL      +   +  +  +       
Sbjct: 257 EQRLRRQNERL-SEFTGTVSHDLRGPLAAAMGYLELARAEADDVSFLDDVAAAHQRMKTL 315

Query: 64  LKFMRLAFGYTGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +  + +       +D    +      +        +     VQ++             ++
Sbjct: 316 IDDLLVLARAGNVIDDSSAVPITEAVEYAWNPPPHVKATLDVQIADDVTVQADENRLIQL 375

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI--FSLKINGNLARFPEKFTQIVDGNVESTI 176
             NL   +          T +V  +       F +  +G     P+K   + +    +  
Sbjct: 376 FENLLGNSLEHGIHNDDGTETVTITVGLLEDGFFVADDGPGI-PPDKREAVFESGYTTNP 434

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           D   +    V  +   +   +     DD        
Sbjct: 435 DGTGLGLRIVQDIVDAHGWDVTVTESDDGGARFEIT 470


>gi|220907212|ref|YP_002482523.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863823|gb|ACL44162.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1330

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 60/217 (27%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            + + H++ +P+  I    +LL    I  + +Q    +      +   +      T  +  
Sbjct: 967  AVLSHELRTPLNPILGWSKLLQSPQISAQKLQQGLATIERNAKQQVQLIDDLLDTSRIIR 1026

Query: 80   LIGLGDIEQVIEDFIAVDKRVQVS----------------WTGEKIDLSRERAKILLNLF 123
                 ++  +      +     V                 W G+         +++ NL 
Sbjct: 1027 GQLSLNLAVINLSEPILAALETVRLSAETKEIKLEVKLGSWLGQIRGDVGRLQQVVWNLL 1086

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDS 178
              A    P GG++T+ +          ++  G   +           +  D +   +   
Sbjct: 1087 SNAIKFTPPGGRITVRLSQVDRWAQIQVRDTGKGIQPQFLPHVFELFRQEDSSTTRSFGG 1146

Query: 179  HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              +       +   +   ++     +      + LL 
Sbjct: 1147 LGLGLAIARQVVEAHGGTIMAASQGEGQGATFTVLLP 1183


>gi|149919529|ref|ZP_01908009.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149819654|gb|EDM79081.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 691

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 69/235 (29%), Gaps = 29/235 (12%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSM 58
           + +  + A+  +   I HD  + +  I    EL+ +            D +++    +  
Sbjct: 317 VHAQKMEAINRIAGGIAHDFNNILAVIIGYGELMADALDGQPQLREDLDAMLEAAERAKT 376

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R        +     L  +  ++   +  D  ++  +  E   +  +R ++
Sbjct: 377 LVGQLLSFSRRQIQQRARLRLRAVLDGMRTMLARVLREDIELRFDYAPELGSVQADRGQL 436

Query: 119 LLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARF 160
              +      A  ++P                          +    +F++   G     
Sbjct: 437 EQVVMNLLVNARDAMPEGGRIEVRARNVTLEDDLNEAWEPIPAGEYVMFTVSDTGVGM-D 495

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            E   ++ +    +      +    V+ L  +++  L  +        +S  L +
Sbjct: 496 KETRRRLFEPFFTTKEQGTGLGMSTVLGLVRQHEGTLEVDSAAGEGTRVSVYLPR 550


>gi|330890973|gb|EGH23634.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. mori str.
           301020]
          Length = 436

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDSSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426


>gi|310642322|ref|YP_003947080.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309247272|gb|ADO56839.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 476

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 66/213 (30%), Gaps = 19/213 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67
           S I H++ +P+ +I    E L+    +       MQ+I   +   I  ++ +        
Sbjct: 247 SSISHELRTPLTSIKGWSETLNSGGYDPEETKIGMQIISKETDRLIGLVEEILDFSKLEQ 306

Query: 68  RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLF 123
                  G+VD    L + +  V         ++Q+        +  +     ++ LN+ 
Sbjct: 307 NAMKLVMGTVDLRELLQEIMLNVWAKAEMKQIKLQLDSEETAYLVHGDGNRLKQVFLNIV 366

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDI 181
             A         + +S+Q  K     S++  G      E   ++ D   +         +
Sbjct: 367 DNAIKFSHESSIIYLSLQRVKGNIEISVQDTGIGI-SEENLARVRDRFFQVDHQNGGTGL 425

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  ++L          ++  L 
Sbjct: 426 GLAISQQFVERHHGQMLIRSELGAGTTITVSLP 458


>gi|300868169|ref|ZP_07112801.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
 gi|300333793|emb|CBN57981.1| Sensor protein (modular protein) [Oscillatoria sp. PCC 6506]
          Length = 701

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 20/248 (8%), Positives = 53/248 (21%), Gaps = 35/248 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
            K       +    +L  + + H++ +P+ AI    ++L E             +Q I  
Sbjct: 450 QKARTEAEEASKAKSLFLANMSHELRTPLNAIIGYSDMLAEEFLEIELDNFIPDLQKINS 509

Query: 56  SSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVS 103
           +    ++                       +    + D+   ++        +       
Sbjct: 510 AGKHLLLLVNNILNVSNIESGQIQLDLELFNIETIVKDVVNTLQPLAEKRANILTVNCPE 569

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL------------PRGGKVTISVQDSKNENIFSL 151
             G       +  + L ++   A                    +    +   +   IF +
Sbjct: 570 DIGTMYGDVIKTHQCLFSVLSNASKFTEGGYVNLEVYRHRNNHQEESEIMSGEEWIIFKV 629

Query: 152 KINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G      +                   D   +               +  E      
Sbjct: 630 SDTGIGMSPEQIGKVFQAFTQADESATRRYDGSGLGLAITKKFCQMMGGDIQVESRLGKG 689

Query: 207 VVLSALLE 214
            + +  L 
Sbjct: 690 SIFTIKLP 697


>gi|183984909|ref|YP_001853200.1| two-component system response phosphate sensor kinase, PhoR
           [Mycobacterium marinum M]
 gi|183178235|gb|ACC43345.1| two-component system response phosphate sensor kinase, PhoR
           [Mycobacterium marinum M]
          Length = 481

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   ++  I   +    + +  +             
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLTLARLDVQRPLE 317

Query: 81  IGLGDIEQVIEDFIAVDKRVQV-----------SWTGEKIDLSRERAKILLNLFMVAHAS 129
               D+  +  D +   + +               T E +       ++L NL   A   
Sbjct: 318 RNRVDLLVLAADAVHDARAIDRKRAITVEVLEGPGTPEVLGDEPRLRQVLSNLVGNALQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V  +    +  +   G      +    F +    +           +   
Sbjct: 378 TPDSADVTVRVGTAGQNAVLEVADKGPGMPAEDAARVFERFYRTDSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVHSLVKAHGGDVTLTTAPGEGCCFRVTLPR 468


>gi|146283959|ref|YP_001174112.1| two-component sensor PilS [Pseudomonas stutzeri A1501]
 gi|145572164|gb|ABP81270.1| two-component sensor PilS [Pseudomonas stutzeri A1501]
          Length = 530

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 67/228 (29%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMS 59
             I      + L +L  L + I H+I +P+GAI ++ +LL E   ++    +L ++    
Sbjct: 296 SQIAQKAQQLKLASLGRLTASIAHEIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDH 355

Query: 60  AIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +           +  R        +D    L          ++  + V +   G  +   
Sbjct: 356 SRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQQTVHLETIGSSLQTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKF 164
            +  ++   L            +              ++ +  +  +  +G      +  
Sbjct: 416 MDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLH 475

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             + +    +      +  Y    L   N+ RL      +       +
Sbjct: 476 N-VFEPFFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIV 522


>gi|156744256|ref|YP_001434385.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156235584|gb|ABU60367.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 556

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------- 48
            + I   + +        S I H++ +P+  I    E L       +             
Sbjct: 283 EQKIEAEMQNT-----FISVISHELRTPVSIIKGYAETLARQDAAWDAATLREGLAVIIE 337

Query: 49  ---VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               +     + + A               SV  L+         +       ++ +   
Sbjct: 338 EADRLAQQINTLLEASRLQTDSMRLELSDWSVRPLVERVVERFAPQAGDRFTFQIDIPDD 397

Query: 106 GEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +    ER + ++ NL   A    P GG + I+ + S +  I S+   G      E  
Sbjct: 398 FPPVHADYERTRTVVENLISNAIKYSPNGGLIRITARVSGDFAIISVSDQGIGIPLEEQK 457

Query: 163 -KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +  +   ++      R+  +         S  + 
Sbjct: 458 KLFRRFYRVDNRLRRETQGAGLGLFLSRVIVEAQGGRIWVDSRPGRGSRFSFTVP 512


>gi|134299599|ref|YP_001113095.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Desulfotomaculum reducens MI-1]
 gi|134052299|gb|ABO50270.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfotomaculum reducens MI-1]
          Length = 424

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 68/218 (31%), Gaps = 15/218 (6%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-------- 62
            + L+  L +   H+I +P+  +   ++L+ +   + +  +      M  I         
Sbjct: 204 KLALIGELAAGTAHEIRNPLTTVKGLIQLIAQRFPQGDRARQHFDVIMKEIEQINSIIKE 263

Query: 63  -RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
             L   R     + +    +    +  +  +      ++   +  +   +  +     ++
Sbjct: 264 LLLLARRTTPNLSFASLPAVLDQVLLLIEGEANCRGIQIIRDYNDQLPLVIIDEDQIKQV 323

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            ++L   A  ++P GG++ IS +     N    S    G      E   +I      +T 
Sbjct: 324 FIHLATNAIHAMPSGGELHISARTHDISNALEISFADTGIGI-KKEHLARIFQPFFTTTP 382

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++  +       +   +   L            S  L 
Sbjct: 383 ENTGLGLPVSYQIIDNHGGNLSVRSQLGKGSTFSVTLP 420


>gi|307823178|ref|ZP_07653408.1| multi-sensor signal transduction histidine kinase [Methylobacter
            tundripaludum SV96]
 gi|307735953|gb|EFO06800.1| multi-sensor signal transduction histidine kinase [Methylobacter
            tundripaludum SV96]
          Length = 1161

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 23/223 (10%)

Query: 14   LVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQLIRLSSMSAI 61
            L+  + S I H++  P+ AI +  +            L     I  +  Q    +     
Sbjct: 921  LMGEMASGIAHEVNQPLAAISSYTQVSLNLINVGHPDLAKLAEILYKTQQQALRAGRIIH 980

Query: 62   IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILL 120
               +F++       + D    + D   +  D     + R+          +S ++ +I  
Sbjct: 981  RMREFVKSHAKQRSTADLNTLIHDAVGLCIDELKQNNIRLTFELENNLPSISVDQIQIEQ 1040

Query: 121  NLFM---VAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             L      +  +L       +      S     N     +K NG      ++  QI+   
Sbjct: 1041 VLINLIRNSVEALQNLSSERQRHLTIHSHLVPNNVIRVRVKDNGPGL-DEDQKQQILTPF 1099

Query: 172  VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  D   +       L   ++  L               L 
Sbjct: 1100 YTTKSDGMGMGLSISRSLIEAHEGTLHFNSKPGKGTTFYFTLP 1142


>gi|156972907|ref|YP_001443814.1| nitrogen regulation protein NR(II) [Vibrio harveyi ATCC BAA-1116]
 gi|156524501|gb|ABU69587.1| hypothetical protein VIBHAR_00585 [Vibrio harveyi ATCC BAA-1116]
          Length = 336

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+++  +  + +   +    A
Sbjct: 105 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 163

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 164 DRLRALVDRLLGPQKPGKKTQENLHQVLEKVRQLVELESQHSVVIERDYDPSLPEILMDA 223

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  Q  K      +  NG     
Sbjct: 224 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGQRCKLAARVEITDNGPGI-P 282

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 283 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHSGKIDVESWPGH-TTFTIYLP 335


>gi|149917313|ref|ZP_01905812.1| sensory transduction protein kinase [Plesiocystis pacifica SIR-1]
 gi|149821920|gb|EDM81314.1| sensory transduction protein kinase [Plesiocystis pacifica SIR-1]
          Length = 422

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 70/222 (31%), Gaps = 9/222 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           A     ++  ++ +  L + + HD  + + AI ++++LL+             + + +  
Sbjct: 196 AAQRERDVEKLEALGRLSAGVAHDFNNLLMAISSTIDLLEIEGRGATAEDFGNLRETVDR 255

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           ++  +   L   R        ++    +G +E ++         ++V        +  + 
Sbjct: 256 ATRLSAELLCVGRDTARPLSELELDAFVGSVEALLFSLAGEGVELRVELEAPGRRILADP 315

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               ++L NL + A  ++   G++ +S   ++     S+  +G                 
Sbjct: 316 GELERVLTNLVVNARDAMAGRGRMVVSTSLAEPYVCLSVVDSGPGMSEEVIAQAFEPFFT 375

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +       +  +        +  LL 
Sbjct: 376 TKGERGTGLGLATCQSIVRRYGGSIELDARLGEGTQVRLLLP 417


>gi|311032225|ref|ZP_07710315.1| Signal transduction histidine kinase [Bacillus sp. m3-13]
          Length = 611

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 66/220 (30%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +P+  + + LE L +   +        + + +  +   I  +  +     
Sbjct: 381 FVANVSHELRTPLTTMRSYLEALADGAWQDDEIAPRFLDVTQTETERMIRLVNDLLQLSK 440

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RERAKILLN 121
                               + +    ++  ++V    +    ++       +  ++L N
Sbjct: 441 MDSRDYNFYKNSVDFVEFFNKIIERFEMSKSQKVDFVRSMPNQEVFVSIDTDKITQVLDN 500

Query: 122 LFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE---KFTQIVDGN--VES 174
           +   A    P GG +T +V   +  N+ + S+   G      +    F +    +     
Sbjct: 501 IISNAMKYSPEGGTITFTVDIEEAANQILVSISDQGVGIPKSDLNKIFERFYRVDKARTR 560

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +   +   +    ++     +   L 
Sbjct: 561 MLGGTGLGLAIAKEMIQAHDGDIWASSVEGKGTTIYFTLP 600


>gi|326317129|ref|YP_004234801.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373965|gb|ADX46234.1| histidine kinase [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 299

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 68/237 (28%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55
            +       + ++ +   + + H+  +PI +I +   LL +        +  R       
Sbjct: 51  TQAEQLR-KATEMKSRFLAYMSHEFRTPISSIRSIARLLADHVDGPLNAEQSRQVAFIQA 109

Query: 56  -SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +   + +    + LA    G VD      ++  + +    + K V  +     +     
Sbjct: 110 TAMEFSDMVDDLLDLAKIEAGRVDISPAWFEMVDLFQALRGMFKPVATNPELNLVFEEPR 169

Query: 115 R-----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       ++IL N    A    PRG     +         FS+   G     PE 
Sbjct: 170 NLPALFTDDRKLSQILRNFISNALKFTPRGEVRVSAQACDGERVRFSVADTGIGI-APEF 228

Query: 164 FTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +   +        +    +       LA      +  + +     V S  L 
Sbjct: 229 HARVFEDFSQVGSPLQKRLRGTGLGLALCRQLAELLGGAVELQSVPGEGSVFSVTLP 285


>gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
 gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
          Length = 1357

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     +S M L   +   I H++ +P+  I   ++ + +   +  + + +     +   
Sbjct: 826  KERQKEVSEMKLRFFI--NISHELRTPLTLILAPVQEMLDKVSDRWLHRQLEHVQKNTNR 883

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--------------- 107
             L  +     Y  +   +  L     +I + +  +                         
Sbjct: 884  LLHLVNQLMDYRRAELGVFNLKVRLNLIHNVVEKNFLFYERLAQRKRIAYNLSSNAEGRE 943

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      I+ NL   A      G  +T+++++  +E +  +K  G+     +K  +I
Sbjct: 944  IFCDPDYMELIVNNLLSNAFKYTGEGKNITVTLKEENHELLLQVKDTGSGIPV-DKQGKI 1002

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   ++  +     I    V  L   +  R+  E  +      S  L 
Sbjct: 1003 FERFYQADNEHLGSGIGLSLVQRLVELHHGRIELESEEGVGSTFSIYLP 1051


>gi|119485363|ref|ZP_01619691.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
 gi|119457119|gb|EAW38245.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Lyngbya sp. PCC 8106]
          Length = 402

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 67/237 (28%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIR 54
            +N      +  L +   + + H++ +P+ AI    +LL     +         V ++  
Sbjct: 162 RQNRKLA-EASRLKSQFLATMSHELRTPMNAIMGFSQLLLRQYPDPLVPQQLDMVQRIFN 220

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103
            +     +  + +  +    G         ++ Q +E      + + V            
Sbjct: 221 NAQHLLTMLNEVLDFSKIEAGHFQLEPTEFNLAQFVELTTQELRSLAVEKQLTLEVNINL 280

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                I+      ++L+NL   A      GG      + + ++ I ++K  G        
Sbjct: 281 EEPMIINDQNSIRQVLVNLISNAIKFTDSGGVWINVQEQANDQLIIAVKDTGVGIASDHL 340

Query: 164 FT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  + ++           +    V  L      ++  E       +      +
Sbjct: 341 QEIFEAFRQINQTNTRKHYGTGLGLAIVDSLVKLMHGQVTVESQLGCGSIFQVEFPR 397


>gi|332664632|ref|YP_004447420.1| PAS/PAC sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333446|gb|AEE50547.1| PAS/PAC sensor signal transduction histidine kinase
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 425

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + K          L +   S   H+  +P+  I +S +LL+       +D+ ++      
Sbjct: 188 LRKAFEKERELNTLKSRFVSMASHEFRTPLSTILSSADLLEMYTAEEQQDKRLKHTTRIK 247

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------------KRVQVS 103
            +    +  +      +   +  I L  +E  +E+F                  +   + 
Sbjct: 248 SAVNNLISVLNDFLSLSRLEEGKINLTPVEFNLEEFCDEVLDDVQALLKPGQVLQHHGLL 307

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +    + +NLF  A      G  +   V+  +NE  F ++  G      E+
Sbjct: 308 SDTMVFLDKKMLKNVFINLFSNAIKYSEPGKMIDCYVEIMENELCFRIQDYGIGIPEEEQ 367

Query: 164 FT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +    I    +    V         R+  E       V    + 
Sbjct: 368 QHLFTRFFRAHNAENIPGTGLGLNIVKRYVELMNGRIHFESTLGEGTVFHVHIP 421


>gi|323700852|ref|ZP_08112764.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323460784|gb|EGB16649.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 581

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 74/239 (30%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMD----LVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL- 55
           +     L  M+    + ++  L + + H+I +P+  I+    L+ ++ I  +        
Sbjct: 331 QTRARTLHRMEHTNRMASIGRLAAGVAHEINNPLAIINEKAGLVRDLFIYKQEYAHDERL 390

Query: 56  -------------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQ 101
                                L F R        ++      ++   + ++       ++
Sbjct: 391 LRNIDSILNSVARCGKITKRLLSFARHIDVEMDEIEFKDLANEVIDFLRKEAEYRSIAIE 450

Query: 102 VSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNL 157
           +           +R    +I LNL   A  ++  GG ++IS +++     +F++  +G  
Sbjct: 451 MDIPENLPPFISDRGKLQQIFLNLVNNAFQAMNDGGHLSISARETACDHLVFAVTDDGCG 510

Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   +I D    +        +       L  E    +  E         +  + 
Sbjct: 511 IPEADIK-RIFDPFFSTKKKTGGTGLGLSITYGLVQELGGTMAVESEVGKGTTFTITMP 568


>gi|315646973|ref|ZP_07900087.1| histidine kinase [Paenibacillus vortex V453]
 gi|315277625|gb|EFU40950.1| histidine kinase [Paenibacillus vortex V453]
          Length = 457

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
           +++  +L  ++ +     + + H++ SP+ +I    + L +           + +I   +
Sbjct: 218 EDMMRDLQQLEQMRREFVTNVSHEVQSPLTSISGYAQALKQVNLADHERSRYLDIIIAET 277

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGL---------GDIEQVIEDFIAVDKRVQVSWTGEK 108
                    +               +           I  +   + A +   ++     K
Sbjct: 278 KRISKMSDSLLKLSVLESQSQQPRLVTLSLDEQIRRVIVALQPQWSARNIHFELELQNVK 337

Query: 109 IDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQ 166
           +    ++  ++  N+          GG V            I  +   G      ++   
Sbjct: 338 VTADHDQLNQVWTNILSNGIKFSKDGGGVIHVSIKLDVKIVIVRISDTGIGIPLEDQKRI 397

Query: 167 IVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          D   +    V  +   ++  ++ E            L 
Sbjct: 398 FERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIVVESEVGQGTTFIVSLP 450


>gi|284097754|ref|ZP_06385752.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283830729|gb|EFC34841.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 539

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57
           M + +        L  L  + + I H+I +P+  I ++  LL ++   ED   Q +    
Sbjct: 300 MKEKLSRT---ERLATLGQVAAGIAHEIRNPLVGIGSTTSLLMEDFPPEDVKRQDLHTIL 356

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKI 109
                  + +     Y    D + G  D+  +                  + V++     
Sbjct: 357 KETRRLDRIVTQIVEYARPRDIVPGSFDMAALVEETLDLVRHSAGQKRLNLTVAFPPVLP 416

Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE 162
                  +  +++LN    +  +L   G + I      +D     + +++ NG      +
Sbjct: 417 ALEADRDQIKQVVLNAIQNSVEALAEHGDIRIEALEELRDGHRGLLTTIRDNGKGISPAD 476

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       +   +   +  +       V++  L 
Sbjct: 477 LPRIFDPFFTMGKRRGTGLGLAICRNIIEAHGGNIKADSQVGVGTVIAIWLP 528


>gi|228907071|ref|ZP_04070935.1| hypothetical protein bthur0013_12440 [Bacillus thuringiensis IBL
           200]
 gi|228852575|gb|EEM97365.1| hypothetical protein bthur0013_12440 [Bacillus thuringiensis IBL
           200]
          Length = 402

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ +    L+LL       +  +L          
Sbjct: 175 QNELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSDTCTAQERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQTLQLEEELLHALSLITPLANLTNVRTHYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG +  ++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNILKNCIEAMPKGGDLYFTLVPDHKHIQLYIKDTGIGM-ESEQVKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVVQTMNGKIDIISEKGIGTTFLLTFP 397


>gi|219849579|ref|YP_002464012.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219543838|gb|ACL25576.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 469

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 61/217 (28%), Gaps = 19/217 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMR------ 68
            L + I H++ +P+  I   LE + +     +DE ++ +          +  +       
Sbjct: 229 QLTADIAHELRTPLSIIKGRLEGIQDGVYEADDEQIEALLAEVALLERLINDLHLLALAD 288

Query: 69  ------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                      +  +     +    Q   +          S   +     +  A++L NL
Sbjct: 289 AGQLPLYRETVSPVMLVNEAIRSFTQSATERKVALTTTIPSDLPDVDVDPQRIAQVLGNL 348

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-----D 177
              A    P GG++ ++V    +   F ++  G+     +                    
Sbjct: 349 ISNALRHTPPGGEINLAVTADADNVTFHVRDTGSGIDSADLPHIFDRFYRSDRSRTRSSG 408

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L   +  ++       H   +S  + 
Sbjct: 409 GAGLGLAIARRLVEAHGGQIWATSQLGHGTTVSFRVP 445


>gi|17232702|ref|NP_489250.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17134349|dbj|BAB76909.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1558

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 54/217 (24%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
            + + H++ +P+  I    +LL     ++E ++    +          +            
Sbjct: 1191 AVLSHELRTPLNPIMGWAKLLRTRTYKEETIKQGLETIERNAKLQTQLIDDLLDVSRILR 1250

Query: 71   ---FGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKILLNLF 123
                     VD    +    + +             +      + +       +++ NL 
Sbjct: 1251 GKLNLNVCLVDLRNTVQAGLETVRLAAEAKSIEIHTILSDEPVQVMGDGDRLQQVIWNLV 1310

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDS 178
              A    P  G+V + ++    +    +   G                            
Sbjct: 1311 SNAVKFTPSEGRVDVRLEQVGRDAQIQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGG 1370

Query: 179  HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              +    V  L   +   ++ E   +D     +  L 
Sbjct: 1371 LGLGLAIVHHLVELHGGTVVAESAGEDQGATFTVKLP 1407


>gi|158317453|ref|YP_001509961.1| integral membrane sensor signal transduction histidine kinase
           [Frankia sp. EAN1pec]
 gi|158112858|gb|ABW15055.1| integral membrane sensor signal transduction histidine kinase
           [Frankia sp. EAN1pec]
          Length = 494

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 58/204 (28%), Gaps = 12/204 (5%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS------ 76
           H++ +PI  I   LELL D+     E + L+          +  +               
Sbjct: 270 HELRTPITIISGHLELLSDDPAERTETVALVTDELDRMSRMVDDLLTLAKARQPDFLRVA 329

Query: 77  -VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            VD +    D+   +        R+  + +G  +       + L+ L   A      G +
Sbjct: 330 DVDLVAFTDDLMARVGALAPRRWRLAEAGSGTAMMDRHRITQALVQLAQNAVQHTGVGDE 389

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-IDSHDIQFYYVILLAH 191
           V +  +       F +  +G      +    F +   G       +   +    V  +A 
Sbjct: 390 VRLGCRPRAGVVRFWVADSGPGVAPEDRDRIFERFARGRPGRGTSEGAGLGLAIVRAIAV 449

Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215
            +   +               + +
Sbjct: 450 AHGGDVQVLGGPGEGATFELAVPR 473


>gi|330507467|ref|YP_004383895.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
 gi|328928275|gb|AEB68077.1| multi-sensor hybrid histidine kinase [Methanosaeta concilii GP-6]
          Length = 1090

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        S+    +   + + H+I +P+ A+     LL    I+      I     S 
Sbjct: 700 LRDAKERAESATKAKSEFLANMSHEIRTPMNAVIGFTSLLLNTNIDSVQRDYIETIHSSG 759

Query: 61  I-------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSW 104
                     L F ++  G        I L +  +   + +A D           V+   
Sbjct: 760 DSLLKVISDILDFSKIEGGMMELEKERIDLIECLETSLNLVAEDASRKGLSVSYEVEPQV 819

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLARFP 161
               +       +IL+NL   A     +G           +  +E  F +  +G      
Sbjct: 820 PRYLMGDMTRLRQILVNLLGNAVKFTDKGFVRLDVSALPVEDGHEIQFRVTDSGIGI-SQ 878

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +++                   +       LA      +  E +          ++
Sbjct: 879 DRMSRLFQSFSQVDASTTRKYGGTGLGLAICKHLAELMGGGIWAESVPGEGSSFYFTIQ 937


>gi|262200821|ref|YP_003272029.1| ATP-binding region ATPase domain-containing protein [Gordonia
           bronchialis DSM 43247]
 gi|262084168|gb|ACY20136.1| ATP-binding region ATPase domain protein [Gordonia bronchialis DSM
           43247]
          Length = 488

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
           A       S   +   +     H++ +P+ +I    EL  +       D + ++   +  
Sbjct: 252 ASEQQARASEEKMRRFIA-DASHELRTPLTSIKGFAELYRQGGVPDATDAMRRIDDEAGR 310

Query: 59  SA---IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEK 108
                   L   RL          L  L      ++       + ++             
Sbjct: 311 MTLLVEDLLVLARLDAQRPVDKQPLDALALAADAVQSARVAAPQREITLKVGESELPPMV 370

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
              +    +++ NL   A    P    +T+ V    +E + S+   G      E    F 
Sbjct: 371 TGDAARLTQVIRNLVNNAVVHTPPEASITVGVGVEGDEVVLSVADTGQGLTAEETAHVFE 430

Query: 166 QIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   G+   +          +    V  L   +  R+  +            L +
Sbjct: 431 RFYRGDSSRSRGDSSAGGSGLGLSIVAALVAAHGGRVGVDSTPGAGATFWVRLPR 485


>gi|262193592|ref|YP_003264801.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262076939|gb|ACY12908.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 538

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 59/227 (25%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSM 58
           M + +   +        L + I H+  SP+ +I  + ELL +   +D   +         
Sbjct: 314 MTQRLDERVRYTRS---LAADISHEFKSPLTSIRGAAELLQDGAADDLPARERFLGNIIE 370

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDI-----EQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +    + +      +        +         +   +       + +S+  +   L  
Sbjct: 371 DSERLDRTVSRLLELSRIESEATQIEIFDYEALVREQVERYREQAELTLSYRSQHTQLPG 430

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVD 169
            R  +   L  +   +       T              +  ++  G          ++ D
Sbjct: 431 RRNHLASVLGNLLENAALHAEAGTAIDVHVSDLGGGRILTEIRNRGP-IISEAVMLRLWD 489

Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +        +    V  + + +  R+      +     +  L 
Sbjct: 490 RFFTTRAKQGGTGLGLAIVASIVNAHGGRVSVRSSAEEGTTFAFELP 536


>gi|261211275|ref|ZP_05925564.1| osmolarity sensory histidine kinase EnvZ [Vibrio sp. RC341]
 gi|260839776|gb|EEX66387.1| osmolarity sensory histidine kinase EnvZ [Vibrio sp. RC341]
          Length = 438

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +    +             + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNEIASDVASSEGGYEVPIETDLQADLTPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|229166273|ref|ZP_04294032.1| hypothetical protein bcere0007_12470 [Bacillus cereus AH621]
 gi|228617218|gb|EEK74284.1| hypothetical protein bcere0007_12470 [Bacillus cereus AH621]
          Length = 354

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ A    L+LL       +  +L          
Sbjct: 127 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDACSAKERKLYIDIAINGIE 186

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++                 + L  L  I  +          ++ S +     
Sbjct: 187 QANHVLTDYLTFAKPSIEKEQKLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 246

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+F     ++P GG + +++          +K  G      E+  ++   
Sbjct: 247 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGM-DQEQIKRLGSP 305

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 306 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIISEKGTGTTFLLTFP 349


>gi|310642599|ref|YP_003947357.1| sensory histidine protein kinase [Paenibacillus polymyxa SC2]
 gi|309247549|gb|ADO57116.1| Sensory histidine protein kinase [Paenibacillus polymyxa SC2]
          Length = 484

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 68/240 (28%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           ++I   +    + +   + + H+I +P+  +    E L +         +E++Q+I   S
Sbjct: 232 RDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGSPEESEELVQVIHDES 291

Query: 58  MSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +     +K +       A         +     IE+V   F    K   +     + D  
Sbjct: 292 LRMGRLVKDLLDLARMEAGHTDMYRQEVDVNELIERVHRKFTVRSKERGLILDYYEPDQH 351

Query: 113 --------RERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARF 160
                       ++L NL   A    P G KV         +        +K  G     
Sbjct: 352 LLLPEADEDRLEQVLTNLLDNAFRHTPSGKKVTIAADQIRGERNELIRIRIKDEGVGIAS 411

Query: 161 PE---KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +            +    V  +   +   +    +       + LL 
Sbjct: 412 EDLPYIFDRFYKADKARVRGEDKGTGLGLAIVRNIVEAHGGSVSAASVLGEGTEFTILLP 471


>gi|332653990|ref|ZP_08419734.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
 gi|332517076|gb|EGJ46681.1| sensor histidine kinase [Ruminococcaceae bacterium D16]
          Length = 484

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           +A++I   L  ++      A   S   H++ +PI  I     LLD     +     E + 
Sbjct: 238 LAQSINAMLERINRAYSAQARFVSDASHELRTPIAVIQGYAALLDRWGKDDPDALQESIS 297

Query: 52  LIRLSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            IR  + S    ++ +                  D     G++ +  E        +   
Sbjct: 298 AIRSEAKSMEELVEQLLFLARGDNDTQPVKPSLFDLSALAGEVLREEEMICPDRVFLPRW 357

Query: 104 WTGEKIDLSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF- 160
                   + +    +++  L   A    P G ++ + +   +     +++  G+     
Sbjct: 358 GEEPVPVRADQGLIKQVMRILMDNAIKYSPPGSRIYLRLSTQERYARLTVQDEGDGISPE 417

Query: 161 --PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P  F +    +           +       +   ++              +S LL 
Sbjct: 418 SIPHIFERFYRTDQSRDRKTGGTGLGLSIARWIVERHEGWFEVVSRPGVGTRISFLLP 475


>gi|283836621|ref|ZP_06356362.1| putative hybrid two-component system regulatory protein
           [Citrobacter youngae ATCC 29220]
 gi|291067351|gb|EFE05460.1| putative hybrid two-component system regulatory protein
           [Citrobacter youngae ATCC 29220]
          Length = 757

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 68/236 (28%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L     +  V  L   + HD  + +  I  SL+L++    +   +     ++ 
Sbjct: 382 RQELEEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLDLVEPDSPDAPRINRALKAAE 441

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R    +  +V+    L ++ +++   +     +++           +
Sbjct: 442 RGALLTQRLLAFSRKQSLHPHAVELKTLLENLGELMRHSLPATLTLEIEAQSPAWPAWID 501

Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSKN----------ENIFSLKINGNLARFP 161
            +++   +      A  ++     +      ++             +  +   G      
Sbjct: 502 VSQLENAIINLVMNARDAMEGQAGMIKIRTWNQRVTRSDGRKQDMVMLEVVDRGYGM-SQ 560

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 561 EVKAQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616


>gi|259047259|ref|ZP_05737660.1| sensor histidine kinase [Granulicatella adiacens ATCC 49175]
 gi|259036035|gb|EEW37290.1| sensor histidine kinase [Granulicatella adiacens ATCC 49175]
          Length = 350

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 73/231 (31%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLS 56
           MA+++     S +  +   + + H++ +PI ++    +LL +  +++   +    ++R  
Sbjct: 122 MAEDLR---RSDEHRSAFIANLSHELKTPIASLVGVSDLLADEKLDESTRKDLTGILRSE 178

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           S+        +                           ++       K + +++T + + 
Sbjct: 179 SLRLSRLCDGIVTLTKMERDFKPKKKPLQLDEQIRHAVILITEKWKQKEIDLTFTSQPVH 238

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
              +     ++  NL   A         +TI +Q+  +    ++  NG      +    F
Sbjct: 239 CVTDPDLSMQVWTNLLDNAVKYSSDNVHLTIDIQEENDTARVTIADNGIGMSEEDQRHIF 298

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Q          + + +    V  +  +    +  E           +L K
Sbjct: 299 EQFYQVEHSHVQEGNGLGLTIVKTIVDQLGGSISVESEIGKGSTFQVILPK 349


>gi|148655756|ref|YP_001275961.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148567866|gb|ABQ90011.1| PAS/PAC sensor signal transduction histidine kinase [Roseiflexus
           sp. RS-1]
          Length = 899

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 61/218 (27%), Gaps = 24/218 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRL---- 69
           + I H++ SP+  I+   +LL         G + ++++ +R         ++ + +    
Sbjct: 664 ATISHELRSPLTVIYGYTDLLLRGMVGELSGEQRDLLEAVRNRVELMNNIVRNVIMVASI 723

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL---N 121
                   +       +    +  + + F      + V+   +   +  +R ++L+    
Sbjct: 724 EANTLQTDFAAQDVRRMIDEAVAPMRKSFEKKGLALTVTTPDDLPPVRADREQLLIILGQ 783

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           +   A     +G     + Q         +   G      +   ++           S  
Sbjct: 784 VIDNARRYTQQGEVTITAHQRDNGMVQIDVSDTGPGI-PADAMNRLFTRFFRVEGNNSPE 842

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       L   +  ++            S  L 
Sbjct: 843 RGSGLGLVITRQLVERHGGKVWAHSEVGRGSTFSIALP 880


>gi|86157538|ref|YP_464323.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774049|gb|ABC80886.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 463

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 57/211 (27%), Gaps = 15/211 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----------FMR 68
           + + HD+ +P+ AI+ S  LL   G    + +       SA    +              
Sbjct: 252 AIVSHDLKNPLEAIYLSAALLLRTGAAPRLRRHAETIQRSAARMDRLIRELLDLSSIEAG 311

Query: 69  LAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFM 124
                         + +    +          +     G +  +  +R    ++L NL  
Sbjct: 312 RLVVEPRPEPLDAVVEEALAGLSPLAQERGVALAADTAGAREPVPCDRERILQVLSNLVG 371

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A     RGG VT+    +  E    ++ +G      +            +     +   
Sbjct: 372 NALQFAARGGHVTVRAALAPAEARVEVRDDGPGIAPAQLRRVFDRYWKSGSRRGSGLGLS 431

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +  R+  E            L +
Sbjct: 432 IAKGIVEAHGGRIEVESQLGAGSTFRFTLPR 462


>gi|298292228|ref|YP_003694167.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
 gi|296928739|gb|ADH89548.1| multi-sensor hybrid histidine kinase [Starkeya novella DSM 506]
          Length = 839

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 31/236 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   + HD  + + AI    +LL           + +  I+ ++  A   
Sbjct: 454 QSQKMQAVGQLAGGVAHDFNNVLTAIIGYSDLLLANSRPTDPSFQDVMQIKQNANRAAGL 513

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERA 116
           ++ +            ++ LGD+   +   +       +                  +  
Sbjct: 514 VRQLLAFSRRQTLRPQVLNLGDVMSDLSMLLRRLLGETIKLEVKEERDLWPVKADLNQFE 573

Query: 117 KILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++++NL + A  ++P               +  +   +   + +  +  +   G     P
Sbjct: 574 QVIVNLAVNARDAMPEGGTLAIRTANVSAAQAAQYAEAGLPAADHVLVEVTDTGAGI-PP 632

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +I +    +        +    V  +  +    L  E       +    L +
Sbjct: 633 AIIDKIFEPFFTTKEVGKGTGLGLSTVYGIVKQTGGTLQVESEPGKGSIFRVFLPR 688


>gi|294499356|ref|YP_003563056.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294349293|gb|ADE69622.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 496

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 69/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           +  ++   +   D    L S I HD+ +PI +I   +E + +      + +    L+  +
Sbjct: 244 LKSSVELQIQYEDNRKQLLSSISHDLRTPITSIVGYVEGIQDGVANTPDKLSKYLLTIST 303

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------- 112
               +  +         +D        +++           ++ +   + D+        
Sbjct: 304 KAKDMNALIDELFLFSKLDLHEIPFVFKKLNISAFMESYVQELQFEMSEHDIDVLFSNDS 363

Query: 113 ----------RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
                      +  ++L+NL   +   + +  +    V   +++E I  +K NG      
Sbjct: 364 LTTLYAKADAEQLRRVLINLTTNSIKFMDKERRRIDIVLSATESELIIEVKDNGAGISPE 423

Query: 162 ---EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                F +                +       +   +   +           +   L+K
Sbjct: 424 ALAHIFDRFYRAEQSRNSNTGGSGLGLAIAKQIVERHGGDIWALSKLGEGTSIFFSLQK 482


>gi|269839398|ref|YP_003324090.1| multi-sensor signal transduction histidine kinase [Thermobaculum
            terrenum ATCC BAA-798]
 gi|269791128|gb|ACZ43268.1| multi-sensor signal transduction histidine kinase [Thermobaculum
            terrenum ATCC BAA-798]
          Length = 1171

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 5    ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---------- 54
            +     ++ + +   + + HD+ +P+ ++    +LL       + + + R          
Sbjct: 929  LRQTQEAVQMRSEFLAMVSHDLKNPLVSVKGMAQLLRRQLERGDCLDVQRLIEGLDKIDS 988

Query: 55   ---LSSMSAIIRLKFMRLAFGYTGSVDSLI----GLGDIEQVIEDFIAVDKRVQVSWTGE 107
                 S      L   RL  G    +D        L                V++     
Sbjct: 989  VATRMSAQINELLDTARLQMGEPLELDVRPFDLVSLARQLVEQHARTTSKHNVELRTDLG 1048

Query: 108  KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160
            ++    ++ +I   L      A    P GG V ++V+  +    +  +  +   G     
Sbjct: 1049 ELVGEWDQLRIERVLSNLLSNAIKYSPEGGDVVVTVRTEEADGRSWAVVDVTDQGLGIPA 1108

Query: 161  PEKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E           S     I    +    V ++  ++  R+     +      S  L 
Sbjct: 1109 RELPRIFDRFYRASNVEGRIGGTGVGLASVRMIVEQHGGRISVTSQEGQGSTFSVWLP 1166


>gi|298490277|ref|YP_003720454.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
 gi|298232195|gb|ADI63331.1| response regulator receiver sensor signal transduction histidine
           kinase ['Nostoc azollae' 0708]
          Length = 446

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 67/243 (27%), Gaps = 29/243 (11%)

Query: 2   AKNICFNLSSMDL--VALL----CSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQL 52
            +     L ++ L   + L     + I H+  +P+ AI    ++L       +  + + +
Sbjct: 155 RQREQIQLQNLRLLEASRLKTKFLATISHEFRTPMNAIIGFSQILLRPKFGQLNSQQVDM 214

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVDKRV 100
           +     +    L  +     ++      + L                +++    A    +
Sbjct: 215 VERILNNGKHLLMLLNEVLDFSKLESGRLELKPEILDLEKIVNNSVSEIMSLAEAKKLSL 274

Query: 101 QVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            V    +   +  +  ++   L      A      GG      + ++N    +++  G  
Sbjct: 275 VVETDLQNTLIFNDSVRVRQILINLLANAVKFTESGGIWVEVKEITQNRLTITIRDTGIG 334

Query: 158 ARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +        + VD  +        +       L      ++  E       +    
Sbjct: 335 ISSKDFKHIFEAFRQVDQGISRKYPGTGLGLAITDSLVQMMGGKIFLESKLGVGSIFKIE 394

Query: 213 LEK 215
           L +
Sbjct: 395 LPR 397


>gi|220908337|ref|YP_002483648.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219864948|gb|ACL45287.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 503

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 61/226 (26%), Gaps = 21/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR 63
               L     S + H++ +P+ ++  +L+LL      +       V+++   ++   I  
Sbjct: 270 ERKQLENEFISLVSHELRTPLTSLMGALDLLGTGQLGNLTPKGQHVLRIATTNTERLIRL 329

Query: 64  LKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +  +                      L          +A    +Q+      + L  +  
Sbjct: 330 INDILDLERIKAGKITMQKVRCDAAELITQAAEALQEMAHQANLQLVVEPIAVALIADPD 389

Query: 117 KILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
           +IL  L      A       G+V +  Q         ++  G      +    F +    
Sbjct: 390 RILQTLTNLLSNAIKFSEPQGRVWLRGQVEGEILHLQVQDQGRGIPADKLQTIFERFQQV 449

Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +       + + +  ++  E +          L 
Sbjct: 450 DASDSRKKGGTGLGLSICRSIVNLHGGKIWAESVLGEGSTFHIHLP 495


>gi|189466068|ref|ZP_03014853.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM
           17393]
 gi|189434332|gb|EDV03317.1| hypothetical protein BACINT_02438 [Bacteroides intestinalis DSM
           17393]
          Length = 294

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 55/232 (23%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------- 52
           + +       S  L     + + H+I +P+ AI     +L E        ++        
Sbjct: 52  LQQLNEVAEESNQLKNAFIANMTHEIRTPLNAIVGFTNVLAETDNLSREERMIFLKEIND 111

Query: 53  -IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVS 103
                       L F ++        D  + +  + Q +                 V+  
Sbjct: 112 NKDFLVQMINDLLDFSKIEANTMEYKDGDVDVNALIQEMCAAENAHPRPSGIQIEFVEKL 171

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +      A+++ NL   A     +G       + S N   F +   G       +
Sbjct: 172 PQCRLMIDRVRFAQVINNLVKNALKFTEQGSVKIGYRRLSNNNFYFYVADTGCGIDEESR 231

Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   I    +       +       +  E            L 
Sbjct: 232 RAIFERFVKMNYNIRGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283


>gi|169826870|ref|YP_001697028.1| sporulation kinase A [Lysinibacillus sphaericus C3-41]
 gi|168991358|gb|ACA38898.1| Sporulation kinase A [Lysinibacillus sphaericus C3-41]
          Length = 488

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 17/216 (7%), Positives = 61/216 (28%), Gaps = 12/216 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------RLSSMSAIIR 63
            ++++V  + + I H+I +P+ ++    +LL     ++  M L       +         
Sbjct: 252 HALNVVGQMAASIAHEIRNPLTSLKGFTDLLKINADDESRMYLSVIDSELQRMEQILSEL 311

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
           L   + +      ++    +  + + +  D +  +  +Q      ++ +     ++   L
Sbjct: 312 LVLSKPSTMKVELLELDHIVKQVIEFMLPDALMKNIMIQYISNPNQVYIGGNENRLKQVL 371

Query: 123 FMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
             +   ++               +       ++K  G           +      +    
Sbjct: 372 MNLIKNAMESMNNGGTITVEMTTNDCAIVELTIKDEGVGMDSTTL-QNLFQPFYTTKSSG 430

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +V  +  E+   +                 
Sbjct: 431 TGLGLAFVKKVIEEHDGIIGVNSELQKGTCFHLQFP 466


>gi|296129123|ref|YP_003636373.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
 gi|296020938|gb|ADG74174.1| multi-sensor signal transduction histidine kinase [Cellulomonas
           flavigena DSM 20109]
          Length = 589

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 61/234 (26%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56
           A ++     +  L       + H++ +P+ ++   +ELL +        + E + +I  +
Sbjct: 351 ATDVTAEREAARLKDQFVGLVSHELRTPLTSVLGYVELLLDGTEELTDEQREYLGIIDRN 410

Query: 57  SMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +   +  +  +          F  + +      +           A    V ++      
Sbjct: 411 ARRQLRLVSDLLLSAQVDAGTFAISPTDVDAAVVARASLASAAPAADAAGVTLAGDLRPA 470

Query: 110 DLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEK-- 163
            L  +  ++   +  +   +L                     + ++   G      E   
Sbjct: 471 PLRADPVRLGQAIDNLVSNALKFTPTGGTVRVSVEPGDDGGAVVAVSDTGIGIPPDELAN 530

Query: 164 -FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    +  +   I    +       +   +   +            + +L 
Sbjct: 531 LTERFYRASTATRRAIPGVGLGLSITRAVVEAHGGTVRIASTVGEGTTFTLVLP 584


>gi|160882913|ref|ZP_02063916.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|237722969|ref|ZP_04553450.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372527|ref|ZP_06618909.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
 gi|156111777|gb|EDO13522.1| hypothetical protein BACOVA_00875 [Bacteroides ovatus ATCC 8483]
 gi|229447491|gb|EEO53282.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632336|gb|EFF50932.1| putative CRISPR-associated protein Csc2 [Bacteroides ovatus SD CMC
           3f]
          Length = 785

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 55/221 (24%), Gaps = 18/221 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI    +LL      +E      + + ++ I L+    
Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPSAETAEEKKLYSDIINQNSDILLQLIND 479

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    +  + +                           
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKEGVTLVFDNEEEDLLMEGDQNRI 539

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173
            +++ N    A       G++         +    +K  G     PEK   I +  V   
Sbjct: 540 MQVITNFLTNASKFT-YEGEIRFGFGRMDKDIRVYVKDTGIGI-EPEKVDHIFERFVKLN 597

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +      ++  +    +               + 
Sbjct: 598 SFAQGTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP 638


>gi|49475714|ref|YP_033755.1| sensor histidine kinase [Bartonella henselae str. Houston-1]
 gi|49238521|emb|CAF27757.1| Sensor histidine kinase [Bartonella henselae str. Houston-1]
          Length = 825

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 61/241 (25%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
               + +  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 438 EDKMMQNQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRSFDPAYADLINIKNNAN 497

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111
            A   ++ +             +   ++   I +            K +           
Sbjct: 498 RAAALVQQLLAFSRKQTLQPEKVDFTELLSDIRNLILPLLGNNIQLKIIHGRDLWSVEVD 557

Query: 112 SRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156
                ++++NL + A  ++                +  +              ++   G 
Sbjct: 558 QASFQRVIMNLVINARDAMPNGGIVTIATNNITKQQSAEFHHVGFGFGEYVQLTISDTGT 617

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    ++ +    +        +    V  +  +    +  +  +         L 
Sbjct: 618 GISAA-VQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGYIYCDSREGEGTTFHIFLP 676

Query: 215 K 215
           +
Sbjct: 677 R 677


>gi|160901352|ref|YP_001566934.1| osmosensitive K+ channel signal transduction histidine kinase
           [Delftia acidovorans SPH-1]
 gi|160366936|gb|ABX38549.1| osmosensitive K+ channel signal transduction histidine kinase
           [Delftia acidovorans SPH-1]
          Length = 904

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-------------LLDEVGIEDE 48
           A+     +    +   L S + HD+ +P+  I  + E             +L++V I+ +
Sbjct: 666 AQQTQIAMEGERMRNTLLSAVSHDLRTPLTTILGAAEAAQRHVPPGGAADMLEQVRIQAQ 725

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            MQ +  + +      +           +D ++G    +        +      +     
Sbjct: 726 AMQRLVENLLDMARLQQGGVHLQREWLPLDEVVGSALRQMRARLGQHLVSTDVPASLPLL 785

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +    ++L+NL   A    P G  + IS +    E + S++  G           + 
Sbjct: 786 QLDALLMERVLVNLLDNAAKYTPAGTPLAISARVQDGELLLSVRDGGPGLPSHLPVETLF 845

Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLL-PEIIDDHNVVLSALLE 214
           +        ST+    +    V  +   +  R+           + +    
Sbjct: 846 EPFTRGTAESTVSGIGLGLALVRSIVEAHGGRIEAAAARPGPGTIFTLRFP 896


>gi|148975728|ref|ZP_01812559.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
 gi|145964801|gb|EDK30053.1| hypothetical protein VSWAT3_26471 [Vibrionales bacterium SWAT-3]
          Length = 839

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 57/239 (23%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-------LI 53
           + +     +S+    +   + + H+I +P+  I    E+L +  +     +         
Sbjct: 333 LVEAKEDAVSANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSKLSPNQQEVLGDIESSS 392

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSW 104
               +     L   ++  G          L +        I          +D  +    
Sbjct: 393 HSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDVNIDSQT 452

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
             +         ++L NL   A                 +   + +   S+   G     
Sbjct: 453 PPQLFFDEYRVRQVLTNLLSNAIKFTSNGTITTDIAYTPMSMGRGKLECSVSDTGIGI-E 511

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           PEK   I +        +        +       L       +    +       +  L
Sbjct: 512 PEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGEGSTFTFCL 570


>gi|148976492|ref|ZP_01813188.1| osmolarity sensor protein [Vibrionales bacterium SWAT-3]
 gi|145964068|gb|EDK29325.1| osmolarity sensor protein [Vibrionales bacterium SWAT-3]
          Length = 420

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/209 (10%), Positives = 65/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 209 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDAYLAEGIISDTEECNEIISQFMDYLKP 268

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILLNLFMVAHA 128
               +     +  +       E    V     +       +       + + NL + A  
Sbjct: 269 VDRESFQAVFVDDIAREVSSSEGGYEVQIETDIPDTMKPALGNPIAMKRAVSNLVVNALR 328

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 KV+  +         +++ NG      +    F     G+     +   +    
Sbjct: 329 YGNGWVKVSTGMTADNKLAWVTVEDNGPGIPQDQIGKLFEPFTRGDTARGSEGTGLGLAI 388

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  +++  ++     +  +       
Sbjct: 389 VKRIVSQHQGAVVVNNRSEGGLKAQISFP 417


>gi|150021372|ref|YP_001306726.1| histidine kinase [Thermosipho melanesiensis BI429]
 gi|149793893|gb|ABR31341.1| histidine kinase [Thermosipho melanesiensis BI429]
          Length = 465

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 74/240 (30%), Gaps = 30/240 (12%)

Query: 4   NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLS 56
           N+ + +    L  L        + I H++ +P+ A+    E LL+     +   + + + 
Sbjct: 223 NVTYEMELEKLKQLDKIKTEFVANISHELRTPLSAVKAYTETLLNMEIDPESQKEFLSII 282

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------IAVDKRVQVSWTG 106
              +      +     +T      + L   +  I +            A  + V++    
Sbjct: 283 YEQSERLESLLNDLLDFTLIDSGSMELEYSKFNICNVVDDVLKKLLSFAQKQDVKLEKEC 342

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARF 160
           E +++S ++ +I   ++ +   ++    +              ++  I  ++ NG     
Sbjct: 343 EDVEISADKRRIFQVIYNLVDNAIKFNDREKPERFVKILVKKLEDILIIEVEDNGIGIPK 402

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I +            +    +    V  +   +   +  E  +    +    + 
Sbjct: 403 SE-QEKIFEKFYKIDRSLTYEVPGTGMGLAIVKEIVRLHGGNIEVESEEKKGSIFRVNIP 461


>gi|167644627|ref|YP_001682290.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347057|gb|ABZ69792.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 570

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 54/235 (22%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +    +   + + H++ +P+  +      L    ++      +     S 
Sbjct: 186 LEKAQIEAQEANRAKSAFLAMMSHELRTPMNGVLGMAHALGSTQLDARQADYVETIVQSG 245

Query: 61  IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
              +  +                     D       +++V  +            V    
Sbjct: 246 DGLMAILNDILDLSKIEARKLEFEITPFDIRALGRQLQRVWSETARRKGLSLTLDVAPET 305

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +ILLNL   A      G         +      ++   G     PE+ 
Sbjct: 306 PQWLAGDPARVRQILLNLVSNALKFTEEGRVALRIAPHAAGGVEITVSDTGAGM-SPEQQ 364

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            ++          +        +       LA     R+  +         + +L
Sbjct: 365 AKLFTPFVQGDASIARRFGGTGLGLSICRELAEMMGGRVTADSRPGEGSTFTVVL 419


>gi|21243225|ref|NP_642807.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108755|gb|AAM37343.1| two-component system sensor protein [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1364

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSVIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVVTLEK 872


>gi|309779187|ref|ZP_07673950.1| periplasmic sensor signal transduction histidine kinase [Ralstonia
           sp. 5_7_47FAA]
 gi|308921991|gb|EFP67625.1| periplasmic sensor signal transduction histidine kinase [Ralstonia
           sp. 5_7_47FAA]
          Length = 505

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 70/237 (29%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + + +       +L     S   H+  +P+G I    + L          + +E  + IR
Sbjct: 266 LQETLDKERRMAELQRNFVSMASHEFRTPLGVIDGQAQRLIRMRDALPPEVLEERCEKIR 325

Query: 55  LSSMSAIIRLKFMRLAFGY-------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
            +       +  +  +  +                   L  + ++         ++  V+
Sbjct: 326 AAVQRMTHLMDHLLDSSHWLDSTTPAAMRRTDFPLAALLTEVCEMHLEGTPSARIELCVE 385

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   +   NL   A    P G  V++ ++   +    +++  G      
Sbjct: 386 TDEPNTFFGDARLLFQAFSNLVGNAVKYSPPGAPVSVRMRSDGDGVSVTVEDRGLGIPER 445

Query: 162 EK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F + V G   +      +  Y V L+   ++  +     +      +  L +
Sbjct: 446 DIERLFERYVRGGNVAGTVGAGVGLYLVKLVVELHRGTITVTSEEGKGSTFNVFLPR 502


>gi|282864272|ref|ZP_06273328.1| histidine kinase [Streptomyces sp. ACTE]
 gi|282560759|gb|EFB66305.1| histidine kinase [Streptomyces sp. ACTE]
          Length = 382

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 54/219 (24%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 156 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 215

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                          VD    +    Q +        R  V       DL  +     ++
Sbjct: 216 ISRIDSGRLELRRQPVDISAAVERHVQALTAAGQAPDRFLVRTRQPLPDLWADPDKVDQV 275

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFPEKFTQIVDGNVEST 175
           L NL   A         + IS     +E      ++   G                  S 
Sbjct: 276 LGNLLENAVRHGEGTVTIDISPAPGGSETSATAVTVSDEGPGIPEESMGRVFTRFWRGSK 335

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  Y V  +   +   +  +           +L 
Sbjct: 336 RGGTGLGLYIVKGIVEAHGGTITVDRGPGGGAEFRFILP 374


>gi|256842285|ref|ZP_05547789.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736169|gb|EEU49499.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 622

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 59/229 (25%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +AK        +   +   + + H+I +P+ AI    +LL   ++  +    + LI++++
Sbjct: 387 LAKEKAEEADMLK--STFLANMTHEIRTPLNAIVGFSDLLGVEEDSELRQNYISLIKMNN 444

Query: 58  MS----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              M         + S +        +     V+  +       
Sbjct: 445 DLLLSIVNDVLDISRIESDMMTFTYMDVYLPSFMKDLYNSIQLRRPEGVEMTLDACPDII 504

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166
                    +I +NL   A     +G        +  +    F +   G      E    
Sbjct: 505 FNIDRNRLWQICMNLLTNAVKHTKKGRIWFGYTLEAEEKMIKFYVSDTGCGIPKDELDNI 564

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S  +    ++      L  +    +     +         L 
Sbjct: 565 FARFVQLSDFEQGVGLELAICKGLVLKMGGNISVISEEGFGSTFIFTLP 613


>gi|229012822|ref|ZP_04169991.1| hypothetical protein bmyco0001_32610 [Bacillus mycoides DSM 2048]
 gi|228748503|gb|EEL98359.1| hypothetical protein bmyco0001_32610 [Bacillus mycoides DSM 2048]
          Length = 516

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       + +    + ++   ++   +     + +       D+
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAVMHSVHIIMDHFDYISDI 400

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQI 167
             +  ++   L  +   ++            +     +     +   G      E+  ++
Sbjct: 401 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGI-PEERMARL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 506


>gi|197120535|ref|YP_002132486.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196170384|gb|ACG71357.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 498

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 63/229 (27%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
           A+     L +  L  L  + +   H++ + +  I     +    L +       ++ IR 
Sbjct: 255 AQKTREVLRADRLATLGGIAAGFAHELGNSLNVIRGYAAVTSRELPDDSPHRSDVEAIRR 314

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
               A   ++   +          +  +  I +     +            V    +  +
Sbjct: 315 EVTRAAALIERFLVFARARTVHPLVQPVEPILREAVEVLGPAAAHAKVERAVEVQPDLPE 374

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFT 165
           L  +     +  LNL + A  ++   G   ++V+  +      ++    G      E   
Sbjct: 375 LLADAELLRQAFLNLGVNAVQAMQDRGGGKLTVRALREPGGLVVEFQDTGPGI-DAEAAA 433

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +      +    V   A  +   +    +          L 
Sbjct: 434 HVFEPFFTTKATGTGLGLAIVRQAAEAHGGTVEVAGVPGAGATFRVHLP 482


>gi|160914842|ref|ZP_02077056.1| hypothetical protein EUBDOL_00850 [Eubacterium dolichum DSM 3991]
 gi|158433382|gb|EDP11671.1| hypothetical protein EUBDOL_00850 [Eubacterium dolichum DSM 3991]
          Length = 525

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            K       +  L A L   I HD+ +P+ +I  + ++L   ++   + + +QL      
Sbjct: 279 KKQSELRAKNEQLRADLLRSISHDLRTPLTSISGNADMLVSKEQELAQKDRLQLYEDIYD 338

Query: 59  SAIIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            ++  +  +                        D L          +    +  ++    
Sbjct: 339 DSLWLINLVENLLSITRMEEGAIRLKLEPQMIEDILYEALKHVSRKKKEHHLHVQIDDDL 398

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    ++++NL   A    P+G  +T+     ++     +  +G      +K 
Sbjct: 399 -LMADMEAHLIIQVIINLVDNAIKYTPQGSNITLHAYQKEDMVTIEVYDDGAGI-PDDKK 456

Query: 165 TQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I D              S  +       + H +   +       H  +    L 
Sbjct: 457 EHIFDKFYRGNTKIVDSKRSLGLGLALCKSIVHSHGGEIHVMDRIPHGAMFYFTLP 512


>gi|108762122|ref|YP_633989.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466002|gb|ABF91187.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 990

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 67/234 (28%), Gaps = 22/234 (9%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            K +   +     L +L  + + + H+I +P+ AI +  + L    ++     E   LI 
Sbjct: 741 RKAVDARMAHQDRLASLGRVAAGVAHEIGNPLTAIASLTQNLKYELEDPAAVQERAGLIL 800

Query: 55  LSSMSAIIRLKFMRLAFG------------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                    ++ +                        L     + ++      V    + 
Sbjct: 801 QQCRRIDAIVRTLVGFSHEGTVGGQARPFTRVAVAPLLSEAVQLARLARKQHGVSFEHRC 860

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               E    ++   ++L+NL   A  + P  G V +      +     +   G+     E
Sbjct: 861 PEGLEVQGDAQRLEQVLVNLLTNAMDASPEHGVVELEADIDGSAVRLRVMDRGHGI-PTE 919

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +    +   +       +  E+   +  +        +   L 
Sbjct: 920 LAQRVFEPFFTTKGPGEGTGLGLALAAGIVREHGGTMQVDKRQGGGTSIVVSLP 973


>gi|91201482|emb|CAJ74542.1| similar to hybrid sensor [Candidatus Kuenenia stuttgartiensis]
          Length = 967

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 59/237 (24%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     +++ +  +   + + H+I +P+ AI    +LL E  +  +  + +++   + 
Sbjct: 313 LEKAREAAVAANNAKSEFLASMSHEIRTPMNAIIGMSDLLWETTLTPKQSEYVKVFRNAG 372

Query: 61  IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
              L+ +                     +    +    +V+           +  +    
Sbjct: 373 ENLLQIINDILDLSKVEAGQITIEHIEFNLREQIEKTCEVMAFRAHEKGLELNCHLAEDI 432

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160
               I       +IL NL   A      G          +   K   +F +   G     
Sbjct: 433 PTSFIGDPVRLHQILTNLIGNAIKFTRTGEILLTGKRNKLPGKKGMLLFLVSDTGIGLPE 492

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++       +              +       L       +  E            
Sbjct: 493 EKQSIIFNIFSQVDSSTTRQYGGTGLGLAICKRLVELMDGEIWVESTPGKGSTFYFT 549


>gi|114567615|ref|YP_754769.1| signal transduction histidine kinase nitrogen specific-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338550|gb|ABI69398.1| Signal transduction histidine kinase nitrogen specific-like protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 635

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           M + I   +S ++ +ALL   + HD  + +  I  ++ L      +     E +     +
Sbjct: 254 MEEEI-LKVSRLESLALLAGGLAHDFNNLLTIIVGNISLARIVGMDKQDSREYILEAEKA 312

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDL 111
           ++ A    + +         +     + +      +F      V   +            
Sbjct: 313 ALQARGLTQQLLTFAQGGVPIRKTTSIKEFLMQSVNFCLCGSSVISEFCIAEELWNVFVD 372

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS-------------KNENIFSLKINGNLA 158
             +  +++ NL + A  ++P GG + I+  +                         G+  
Sbjct: 373 EGQINQVINNLVLNAVQAMPDGGIIRITADNFYLDNEEGGLTLKKGQYVRLCFHDQGSGI 432

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I D    +  +   +       +  ++   +  E            L 
Sbjct: 433 PL-EHQAKIFDPYFTTKKEGTGLGLSTSYSIIRKHGGYITCESQPGMGTSFIIYLP 487


>gi|331085451|ref|ZP_08334536.1| hypothetical protein HMPREF0987_00839 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407689|gb|EGG87187.1| hypothetical protein HMPREF0987_00839 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 583

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+  I  +   L   ++   ++  ++L      
Sbjct: 342 KEEAAVMAQNEQLRANLLRAISHDLRTPLTVISGNASNLLSNEDKFDKETKLRLYGDIYD 401

Query: 59  SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +                  SV+ +  +           + + ++ +    E 
Sbjct: 402 DSMWLINLVENLLSVTRIEDGRLNLKMSVELIDEVTAESIRHLPRKSAEYQIHLKKNDEF 461

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     ++++NL   A    P G  + ++ Q  +N    S+  NG      E   
Sbjct: 462 LMAKMDVRLILQVIINLIDNALKYTPAGSVIEVASQKKENMVEVSVSDNGPGI-SAEAKG 520

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +     T        S  +       +   ++  +  E    H  + +  L 
Sbjct: 521 HIFEMFYTGTHKIVDSRRSLGLGLSLCRSIIEAHEGSIRVEDNHPHGCIFTFTLP 575


>gi|291549940|emb|CBL26202.1| Osmosensitive K+ channel histidine kinase [Ruminococcus torques
           L2-14]
          Length = 899

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +   L    +    D   QL      
Sbjct: 658 KQEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNGDFFDNDTKKQLYMDIYD 717

Query: 59  SAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +                  + D +  +        +  + +  + V    E 
Sbjct: 718 DSMWLINLVENLLAVTRIEEGRLNLRITEDLMDDVITEALHHINRKSEEHHISVESKEEF 777

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     ++++N+   A    P+   + I  +    + I S+  +GN     E   
Sbjct: 778 LLAKMDAKLIVQVIINIVDNAIKYTPKNSHIVIRTEKRGKQAIVSISDDGNGI-ADEIKP 836

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D           +  S  +       + + +   L       H  V +  L 
Sbjct: 837 RIFDMFYSGANQIADSRRSLGLGLSLCKSIINAHGGELTVSDNLPHGTVFTFTLP 891


>gi|258626569|ref|ZP_05721405.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603]
 gi|258581160|gb|EEW06073.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM603]
          Length = 573

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 65/246 (26%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + + +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 185 LQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRSDSTSYQV 244

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLDQSLVYHRQIAQDKGV 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
             + +   +   E    S    +IL N+   A     + G+V I +   ++     ++  
Sbjct: 305 QFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTKK-GRVDIQLNYIEDGIDIQVQDT 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  +   D   +
Sbjct: 364 GIGIEPKRI-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTINVDSKIDIGTL 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTLRIP 428


>gi|225375836|ref|ZP_03753057.1| hypothetical protein ROSEINA2194_01468 [Roseburia inulinivorans DSM
           16841]
 gi|225212271|gb|EEG94625.1| hypothetical protein ROSEINA2194_01468 [Roseburia inulinivorans DSM
           16841]
          Length = 500

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +  N    ++S     +L S I HD+ +PI A+    E L +         D+ ++ I  
Sbjct: 250 LKDNAEEKINSEKENKMLISNIAHDLKTPITAVKGYAEGLMDGVADTPEKRDKYIRTIYN 309

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------------KRVQV 102
            +      +  + L      +               +    +                  
Sbjct: 310 KANEMDTLINELTLYAKIDTNRIPYNFAKINVGEYFNDCIEEIGLDLESKNIGLAYFNYT 369

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFP 161
             + + I    +  +++ N+   +   L +    + I ++D  +     ++ NG      
Sbjct: 370 DGSTQIIADPEQLRRVIHNIIGNSIKYLDKQRGLINIRIKDVGDFIQVEIEDNGRGIAAA 429

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  ++     +    V+  ++ K
Sbjct: 430 DLPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKESIGTVMYFVIRK 488


>gi|192362033|ref|YP_001983813.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
 gi|190688198|gb|ACE85876.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
            Ueda107]
          Length = 1321

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 23/236 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55
            A++I  +     + A   S + H++ +P+ AI  +L +L              ++Q+   
Sbjct: 927  AQDISESKRVDKMKAEFISTVSHELRTPLTAISGALGILTAGGAGTLPEAATRMLQIAHN 986

Query: 56   SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +++  I  +  +                  +        L         F         S
Sbjct: 987  NALRLIHLVNDLLDMEKLVAGKMQFEIHMQSLLPIVRQSLETNASYAAQFHVHYVLDPDS 1046

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    S    ++L N    A    P  G+V ++++        ++  +G       +
Sbjct: 1047 DDAMVSVDSLRLEQVLANYLSNAAKFSPPNGQVWVNIRRRMGSVRVTVTDHGRGIPEAFR 1106

Query: 164  FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +              +       L      ++  +  +         L 
Sbjct: 1107 ARIFHKFSQADSSDSRQKGGTGLGLAICKELIERMGGKVGFDSAEGQGASFYFELP 1162


>gi|254228540|ref|ZP_04921965.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|151938922|gb|EDN57755.1| conserved hypothetical protein [Vibrio sp. Ex25]
          Length = 365

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+++  +  + +   +    A
Sbjct: 134 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 192

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 193 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIVIERDYDPSLPEILMDA 252

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  +  K      +  NG     
Sbjct: 253 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 311

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 312 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 364


>gi|91772833|ref|YP_565525.1| multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
 gi|91711848|gb|ABE51775.1| pleC (Non-motile and phage-resistance protein) -like multisensor
           signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 519

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 77/241 (31%), Gaps = 29/241 (12%)

Query: 4   NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51
           N      + DL +L        S I H++ +P+ +I   +EL+ +         + + + 
Sbjct: 279 NKELEKVNDDLKSLDVMKNEFLSNISHELKTPLVSIKGYVELVFDGSLGTLNEQQKKAVN 338

Query: 52  LIRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           ++  +S      ++ +            +       + I    +  V          ++ 
Sbjct: 339 IVLRNSERLRRLIESLLFISGLESRAIQYHIEKVRIAEIIDNVVNDVNLQIEDKGLLIEN 398

Query: 103 SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           +       ++ ++A++   L      A    P  G++ ++  + +++    +K  G    
Sbjct: 399 NVPENLPLINGDKARLSDMLTNLVDNAIKFTPSEGRIILNAYEEEDDLHIEVKDTGIGIP 458

Query: 160 F---PEKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               P  F +    +           +  Y    +   +K  +  E  ++    +   L 
Sbjct: 459 KELIPNLFQRFYQVDASIKRRYGGTGVGLYICKNIVEAHKGNIWIESEEEKGTTVHIRLP 518

Query: 215 K 215
           +
Sbjct: 519 R 519


>gi|127514566|ref|YP_001095763.1| osmolarity sensor protein [Shewanella loihica PV-4]
 gi|126639861|gb|ABO25504.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella loihica PV-4]
          Length = 436

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 73/217 (33%), Gaps = 8/217 (3%)

Query: 4   NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60
            +  ++  ++   ALL + I HD+ +P+  I  + E++  ++  +++ ++  I       
Sbjct: 220 QMSRSMQQLEQDRALLMAGISHDLRTPLTRIRLASEMMVEEDEYLKEGIVHDIEDMDAII 279

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              + ++R        +  +  L       E     +  + ++   E    +    +I+ 
Sbjct: 280 NQFIAYIRQDQEANRELVQINDLLQDIAQAETNRDGEIVLALNECPEIPMQAVAVKRIIS 339

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID 177
           NL   A        +++ S         F ++ NG      +    F     G+      
Sbjct: 340 NLVENAFRYGNGWVQLSSSFD--GRRVGFGVEDNGPGIPSDQIPKLFQPFTQGDSARGSV 397

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    +  +   ++ +++     +  +     L 
Sbjct: 398 GSGLGLAIIKRIVDRHQGQVVLTNRPEGGLHAQVWLP 434


>gi|288958347|ref|YP_003448688.1| two-component sensor histidine kinase Nitrogen regulation protein
           [Azospirillum sp. B510]
 gi|288910655|dbj|BAI72144.1| two-component sensor histidine kinase Nitrogen regulation protein
           [Azospirillum sp. B510]
          Length = 772

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 66/227 (29%), Gaps = 28/227 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGI-------------EDEVMQLIRLSSMSAII 62
           A +  RI H+I +P+  I  S E L    +              D +++ +         
Sbjct: 516 ADVARRIAHEIKNPLTPIQLSAERLRRKYLKEISSDTEVFTMCTDTIVRQVDDIRRMVDE 575

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
              F R+       V+    +     +     +   R         + ++ +  +I   L
Sbjct: 576 FSAFARMPQPVMKPVNINDLVRQAVFLQSSAHSGKIRFDTRLPQGPLTVACDSRQISQAL 635

Query: 123 FMVAHASLPRGGKVTISVQ--------------DSKNENIFSLKINGNLARFPEKFTQIV 168
             +   +         +                D   + + +++ NG      E+  ++ 
Sbjct: 636 TNLLQNAADAIEGRPPAADGAVLPPGEVAIAVEDDGEKVVVTVEDNGKGLPGGEQRDRLT 695

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
           +  V +      +    V  +  ++   L  E  D      ++ ++ 
Sbjct: 696 EPYVTTRAKGTGLGLAIVKKIMEDHGGVLTLEDRDGGSGARVTLVIP 742


>gi|228475150|ref|ZP_04059876.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           hominis SK119]
 gi|314936206|ref|ZP_07843553.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270761|gb|EEK12163.1| alkaline phosphatase synthesis sensor protein [Staphylococcus
           hominis SK119]
 gi|313654825|gb|EFS18570.1| sensory box histidine kinase PhoR [Staphylococcus hominis subsp.
           hominis C80]
          Length = 565

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 58/220 (26%), Gaps = 20/220 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            +L     + + H++ +PI +I    E L     ++    +  + +I   S      +  
Sbjct: 339 ENLRREFVANVSHELKTPITSIKGFAETLIEGAKNDEQSLEVFLNIILKESNRIESLVMD 398

Query: 67  MRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +               Y    D         Q    +  +  + ++           + +
Sbjct: 399 LLDLSHIEQQTEIETTYVNLSDLAHNTIHNLQTQAKYKNIAIKSEIENDVIIEAHEGKLS 458

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN-- 171
           +++ NL   A        KV + V     +    ++  G      +    F +    +  
Sbjct: 459 QVITNLLSNAINYSYENNKVIVRVYREDIKVNLEIQDYGIGIDKKDQKHIFERFYRVDKA 518

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                    +       +       ++ E   +   +   
Sbjct: 519 RSRDSGGTGLGLSITKHIVEALHGTIMVESELNKGSLFRV 558


>gi|284031361|ref|YP_003381292.1| histidine kinase [Kribbella flavida DSM 17836]
 gi|283810654|gb|ADB32493.1| histidine kinase [Kribbella flavida DSM 17836]
          Length = 505

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMS 59
            ++      S D +    +   H++ +P+ +I    EL  + G   +   M+ I   +  
Sbjct: 269 KRSEEHARQSEDRMRRFVADASHELRTPLTSIRGFAELSRQRGGSADPATMRRIEEEAKR 328

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEK 108
             + +  + L               D+  +  D +     VQ                  
Sbjct: 329 MGLLVDDLLLLARLDQQRPLQYQPVDLLTLAGDAVHDVHAVQPDRVVSLRILPGSSAPVV 388

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L NL   A    P    +T++V     E +  +   G+     E+  ++ 
Sbjct: 389 EGDEARLRQVLGNLVSNALHHTPAEAAITVAVGTRDGEAVLEVADRGDGL-SDEQKARVF 447

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                 +    V  L   ++ R+            +  L 
Sbjct: 448 ERFYRADSARTRATGGSGLGLSIVAALVAAHRGRVTVTDTPGGGATFTVTLP 499


>gi|171915309|ref|ZP_02930779.1| Multi-sensor Hybrid Histidine Kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 1205

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 54/240 (22%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK    + +         + + H+I +P+  I     LL E  +E     ++     S 
Sbjct: 547 MAKEQAESANRAK--GEFLATMSHEIRTPMNGIIGMSGLLLETKLESSQRDMVDAIRTSG 604

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSW 104
              +  +     ++      + L +                  ++    + +   +    
Sbjct: 605 EALMDIIEDILDFSKIEARRLDLVEETFSLDAVIDGVVDLLNHKIQSKGLTMGVILDPDV 664

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
                  +    +IL NL   A                      N   F++   G     
Sbjct: 665 PLSMRGDAGRLRQILFNLMGNASKFTDEGEVNLFISVARGPGGNNMLEFTVADTGIGMTP 724

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++                   +       L       +  E            L 
Sbjct: 725 QQI-ERLFQPFSQVDSSSTRRFGGTGLGLVISKRLVEMMGGAIHVESTPGKGSRFFFRLP 783


>gi|313902163|ref|ZP_07835572.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
 gi|313467563|gb|EFR63068.1| multi-sensor signal transduction histidine kinase [Thermaerobacter
           subterraneus DSM 13965]
          Length = 522

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 56/224 (25%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             + + H++ +P+ A+    E L      ++    +   Q+I   +      ++ +    
Sbjct: 275 FVANVSHELRTPVAAVQGFAETLLEGVIREDPATAEHFAQVIHREAERMARLVQDLLDLA 334

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKIL 119
                   L       +      A   R ++                          ++ 
Sbjct: 335 RLESPEPGLQRERFDLRDSAVQAAERFRPRLEAAGLRLEVQSPPEPVPVWADRHRLDQVW 394

Query: 120 LNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF---PEKFTQIVD--G 170
            NL   A    P GG VT       Q  +   +  ++  G        P  F +      
Sbjct: 395 TNLLENARQYTPVGGTVTVAVGREGQGHQAMAVGEVRDTGRGIPPDVLPRIFERFYRVDP 454

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V  +   +   +  E       V+   + 
Sbjct: 455 GRSRAAGGTGLGLAIVKHIIEAHGGVVGAESQLGAGTVIRFRIP 498


>gi|297197387|ref|ZP_06914784.1| sensor histidine kinase [Streptomyces sviceus ATCC 29083]
 gi|297146700|gb|EDY58849.2| sensor histidine kinase [Streptomyces sviceus ATCC 29083]
          Length = 605

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 66/229 (28%), Gaps = 20/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----- 58
                L +      + S I H++ SP+  I   LE+  +  ++ + + L  L        
Sbjct: 370 ERRERLEAQRKA--MVSDIAHELRSPLTNIRGWLEVTRDGVVDPDPVLLASLHDEALVLQ 427

Query: 59  --------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                    A      +RL        + L  +    +V  D   V  R  V        
Sbjct: 428 RVIDDLQDLADADAGTLRLHREPVRCDELLQQVAAAHRVAADAARVGLRTDVEGEPWLDA 487

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                 + L NL   A    P GG VT+S +   ++++  +   G      +    F + 
Sbjct: 488 DPVRMRQALGNLVSNALRHTPAGGTVTLSARRDGDDSVLEVADTGTGIAPDDLPHVFDRF 547

Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         +    V  L   +   +          V +  + 
Sbjct: 548 WRAEKSRSRRTGGSGLGLPIVRHLVAAHDGTVAAASEPGTGSVFTLRMP 596


>gi|153807221|ref|ZP_01959889.1| hypothetical protein BACCAC_01499 [Bacteroides caccae ATCC 43185]
 gi|149130341|gb|EDM21551.1| hypothetical protein BACCAC_01499 [Bacteroides caccae ATCC 43185]
          Length = 1337

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 25/218 (11%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVM-------------------QLIRLSSMSA 60
            + I H+  +P+  I   +E L +V      +                   +L+    M  
Sbjct: 817  ANISHEFRTPLTLIIAQIEALLQVNSLSPFLRSRLTKIYRNTFQFKELISELLDFRKMER 876

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                  +                 D   +             +         R+  K+  
Sbjct: 877  GKLHLNVCQMDLIPYLRQIHQDFTDQANLQNIQFIFHTE---AENLLCWFDGRQLRKVFT 933

Query: 121  NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID 177
            NL   A    P  GK+ +S+ D  +     +  +G        P  F +    +   +  
Sbjct: 934  NLLSNAFKHTPEKGKIELSITDKGDSIYIKVIDSGKGIPPKALPFIFDRFYQADENFSSP 993

Query: 178  SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               I       +   +  ++  +   D+  + + +L K
Sbjct: 994  GSGIGLALSKGIVELHHGQIEVQSAIDYGSIFTVILPK 1031


>gi|115372683|ref|ZP_01459990.1| PAS [Stigmatella aurantiaca DW4/3-1]
 gi|310823870|ref|YP_003956228.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370404|gb|EAU69332.1| PAS [Stigmatella aurantiaca DW4/3-1]
 gi|309396942|gb|ADO74401.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 425

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 72/231 (31%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDE---------------VGIE 46
               L    L +L  + + + H+I +P+  + +++  LL +                 + 
Sbjct: 190 HERALEQEKLASLGKMAAGVAHEINNPMSYVTSNVNWLLRDLRKVPQLPRSLQEYVDDVL 249

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105
              +  IR  +   +   +F R         D    L    ++   +         +   
Sbjct: 250 PATLDGIRRVNAIVMDLRRFARGDSEAFTEFDFDAELQSALRIAQGELSHCQVETDLQKI 309

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           G  +   ++  ++L+ LF+ A  ++   G+V IS +   +     ++  G      E   
Sbjct: 310 GTFVGRPQQITQVLVQLFVNAGHAVTDTGRVLISSRREGDMARVDVRDTGVGM-SSETMK 368

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +    +        +       +   +  R+  E         +  L 
Sbjct: 369 RLFEPFFTTKPPGKGMGLGLAAAHGIVTSHGGRIEVESELQKGARFTLFLP 419


>gi|295704708|ref|YP_003597783.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294802367|gb|ADF39433.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 496

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           +  ++   +   D    L S I HD+ +PI +I   +E + +      + +    L+  +
Sbjct: 244 LKSSVELQIQYEDNRKQLLSSISHDLRTPITSIVGYVEGIQDGVANTPDKLSKYLLTIST 303

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------- 112
               +  +         +D        +++           ++ +   + D+        
Sbjct: 304 KAKDMNALIDELFLFSKLDLHEIPFVFKKLNISAFMESYVQELQFEMSEHDIDVLFSNDS 363

Query: 113 ----------RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
                      +  ++L+NL   +   + +  +    V   +++E I  +K NG+     
Sbjct: 364 LTTLYAKADAEQLRRVLINLTTNSIKFMDKEKRRIDIVLSATESELIIEVKDNGSGISPE 423

Query: 162 ---EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                F +                +       +   +   +           +   L+K
Sbjct: 424 ALAHIFDRFYRAEQSRNSNTGGSGLGLAIAKQIVERHGGDIWALSKLGEGTSIFFSLQK 482


>gi|290954713|ref|YP_003485895.1| sensor kinase [Streptomyces scabiei 87.22]
 gi|260644239|emb|CBG67318.1| putative sensor kinase [Streptomyces scabiei 87.22]
          Length = 232

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 18/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVMQLIRLSSMSAIIRL 64
           + S I H++ +P+  I   LE+  +                   +  +I      A    
Sbjct: 8   MVSDIAHELRTPLTNIRGWLEVTRDGLVEPDLELIASLHDEALLLQHIIDDLQDLAAADA 67

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
             + L      + D +       +   +   +                    ++L NL  
Sbjct: 68  GTLALHREPVRADDVVAQTVSAHRARAESSDIRLCTHTDPGLVLDADPVRMRQVLGNLTS 127

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179
            A    P GG VT++ +   +  +  ++  G+     +    F +      +        
Sbjct: 128 NALRHTPAGGTVTLTARQDGDLAVLIVEDTGSGIAADDLPHVFERFWRAEKSRSRRTGGS 187

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V      ++  +  +       V +  L +
Sbjct: 188 GLGLSIVRQFVEAHEGTVTVDSDAGKGCVFTLGLPR 223


>gi|228901708|ref|ZP_04065881.1| hypothetical protein bthur0014_28930 [Bacillus thuringiensis IBL
           4222]
 gi|228857937|gb|EEN02424.1| hypothetical protein bthur0014_28930 [Bacillus thuringiensis IBL
           4222]
          Length = 436

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S + H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDVSHELRTPTSVIISQCEYALSQKNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D  + +  
Sbjct: 256 SRKISTLISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASIDITINIEK 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|261406955|ref|YP_003243196.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261283418|gb|ACX65389.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 460

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 66/243 (27%), Gaps = 31/243 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLS 56
           M + +   +          S + H++ +P+ AI    + L E   E++ +Q     +   
Sbjct: 220 MGRQLHDYIQYQK---QFVSNVSHELKTPLAAIRGFSQYLVEGENENKELQKIYAHLLQE 276

Query: 57  SMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106
           S      +  + L   +              +  L     +     A DK +++ +    
Sbjct: 277 SDRLTRLINELLLLSRFDKAGSNELEARKTEMNELIQQVAMSMGAKAKDKGIEIMFREAE 336

Query: 107 -----------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                               +  + NL   A         + + +  + +E +  ++  G
Sbjct: 337 AEPEDKPMTRVHANVNPMLMSHAIANLVDNAIKYSGSPSLIELKLDHTPSEVVIRIRDQG 396

Query: 156 NLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 E      +       ST     +       +       +  E        ++ +
Sbjct: 397 IGIAGDELERVQERFYRAKNASTASGSGLGLSICKEIVERFNGYIDMESQIGEGTTVTIV 456

Query: 213 LEK 215
           L +
Sbjct: 457 LPR 459


>gi|153833906|ref|ZP_01986573.1| osmolarity sensor protein EnvZ [Vibrio harveyi HY01]
 gi|148869744|gb|EDL68721.1| osmolarity sensor protein EnvZ [Vibrio harveyi HY01]
          Length = 430

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 66/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLFMVAHA 128
               +     +  +       E    V+    ++ T            + + NL + A  
Sbjct: 280 VNKESFEQVDINTITSDVATSEGGYEVEIETDLNPTMPTAKGSPIAIKRAVSNLVVNALR 339

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 K++  V   K      ++ NG      +    F     G+     +   +    
Sbjct: 340 YGNGWVKISTGVTADKQLVWVCVEDNGPGIEQSQIAKLFEPFTRGDTARGSEGTGLGLAI 399

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++     +  +       
Sbjct: 400 VKRIVSQHSGSVVVRNRSEGGLSAQISFP 428


>gi|226227766|ref|YP_002761872.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca
           T-27]
 gi|226090957|dbj|BAH39402.1| phosphate regulon sensor protein PhoR [Gemmatimonas aurantiaca
           T-27]
          Length = 479

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 60/218 (27%), Gaps = 20/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM------ 67
             + + H++ +P+  I   +E L +      +  + +Q++  S       +  +      
Sbjct: 249 FVANVSHELRTPLTVIGGFVETLQDEQLPPELRTQFLQMVDASVRRMQRIVDDLLDLSRI 308

Query: 68  RLAFGYTGSVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                    ++  + +     I  +     A    + V        +  +       L  
Sbjct: 309 ESGGWLPNPIELDVAVLAAEIIAPLERPAAAKGVALHVEIAPGAERVYADPTAARQILTN 368

Query: 125 VAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTID 177
           +A  +L      +++     ++      ++  G        P  F +             
Sbjct: 369 LAENALRHTPTGSVTLLASPAEGGVWIGVRDTGVGIGAEHLPRIFERFYRADPARSREAG 428

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +  R+  +        + A L K
Sbjct: 429 GTGLGLSIVRHLTEAHGGRVRADSTLHVGTTIQAWLPK 466


>gi|251794143|ref|YP_003008874.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
 gi|247541769|gb|ACS98787.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           sp. JDR-2]
          Length = 624

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 15/228 (6%)

Query: 1   MAKN---ICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL--------LDEVGIED 47
           M            S  L  V  L + + H+I +P+  +   L+L        L+  G+  
Sbjct: 375 MRSRNRMEELLRRSEKLTTVGQLAAGVAHEIRNPLTTLRGFLQLQQHTGKMNLEHTGLML 434

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  I L     +I  K     F      D    +  +         V      + +  
Sbjct: 435 SELDRINLIVGEFLILAKPQATRFATKDVRDVFRSVLSLIDSEGHLHNVAFSTSFTESAC 494

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  ++ +NL      ++P GG++   +    ++   S+   G      +   +
Sbjct: 495 LVSCEENQLKQVFINLLKNGIEAMPSGGRIHTHIASKNDQITISITDEGIGI-PEDMIPK 553

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +           +       + H ++  +  +   +    +   L 
Sbjct: 554 IGNPFFTGKESGTGLGMMISQRIIHSHQGLMEIKSQVNVGTTIIITLP 601


>gi|218781351|ref|YP_002432669.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762735|gb|ACL05201.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1011

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 75/233 (32%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +     +  ++ + +L   I HD  + +  +  S+ L              +Q    + +
Sbjct: 636 ETELQKMDKLESIGVLAGGIAHDFNNILTGVLGSISLAKLYGQGNEKVVSKLQEAERACL 695

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----R 113
           +A    + +         V     L ++ +    F+    +V+  ++  +  +       
Sbjct: 696 TARELTQQLLTFARGGAPVKESASLAELLKECVGFVLSGSKVRCEYSVPEDLMPAEVDAS 755

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLARFP 161
           +  +++ NL + A  ++P+GG + IS Q+                   S++  G      
Sbjct: 756 QIRQVIQNLVINATQAMPQGGILYISAQNVEVEEKDNLPLPPGQYVEMSIRDQGEGIPPE 815

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    I D    +  +   +       +  ++   +  E +       +  L 
Sbjct: 816 DLSN-IFDPYFTTKQEGSGLGLATAYSIVKKHDGHIGVESVLGEGTSFTVYLP 867


>gi|146309956|ref|YP_001175030.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp.
           638]
 gi|145316832|gb|ABP58979.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp.
           638]
          Length = 758

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   M  V  L   + HD  + +  I  SLEL +    +   +     ++     
Sbjct: 387 EEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELANPDSPDAPRITRALKAAERGAL 446

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     + +           + +++
Sbjct: 447 LTQRLLAFSRKQSLHPHAVEMKPLLENLGELMCHSLPATITLDIEAQHPAWPAWIDVSQL 506

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+     E  +
Sbjct: 507 ENAIINLVMNARDAMEGEGGIIRIRTWNQRVTRSDGRRQDMVALEVIDHGSGM-SQEVKS 565

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++ +    +        +    V     ++  R+  E        +   L +
Sbjct: 566 RVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 617


>gi|148656487|ref|YP_001276692.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568597|gb|ABQ90742.1| GAF sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 646

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 70/234 (29%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRL 55
           + +     + S  L A+    + I H+  + +G +    EL     +   +D+ + +IR 
Sbjct: 409 LRQKQAELIQSSKLAAVGTFAAGIGHEFNNLLGGMLGYAELGRSASDSAEKDQALDVIRQ 468

Query: 56  SSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +       ++ +                 D +     + ++    + +     +  T   
Sbjct: 469 ACQRGRSIMRGLLTFARRSEHRRDIHHLADVIAETLTLVEIDLRKLNITLERVIEPTPAI 528

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167
           +  S + A++LLNL   A  ++ R G       +        S+   G          +I
Sbjct: 529 LCDSGQIAQVLLNLITNARDAIGRDGGTITVSLRQCGAYVELSVSDTGAGI-PEHVRDRI 587

Query: 168 VDGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  V +             +       +  ++   +  E        +   L 
Sbjct: 588 FEPFVTTKGALGTSNTPGTGLGLSVSYGIVKDHGGDIRFETEIGVGTTMMVRLP 641


>gi|66043529|ref|YP_233370.1| sensor histidine kinase [Pseudomonas syringae pv. syringae B728a]
 gi|63254236|gb|AAY35332.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Pseudomonas
           syringae pv. syringae B728a]
          Length = 440

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 215 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 271

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 272 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPFPLRRVSMKRLLT 331

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 332 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 391

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 392 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 430


>gi|84622292|ref|YP_449664.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84366232|dbj|BAE67390.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 631

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 235 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHTTYKGLSVI 294

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                    +      L   E   E    + K   
Sbjct: 295 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILKLHV 354

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    +++ NL   A    P  G++ +S++      + S+  +G+     
Sbjct: 355 PPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAE 414

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 415 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 473


>gi|150391004|ref|YP_001321053.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950866|gb|ABR49394.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 458

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 81/229 (35%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR 54
           M K +   +     L A+  L S I H+I +P+G I    + ++   E     E +++I 
Sbjct: 221 MVKRLEGQVRRGERLAAVGELASGIAHEIRNPLGIIKTISQTINKEVEDEEIKEGLEIIE 280

Query: 55  LSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG 106
                A       L F +        ++    L ++  +   F            ++   
Sbjct: 281 HEIERANKVVQGLLDFSKPNKVKIEKINLNRLLDELVMITRKFAEQQDVAIELSNMNDAY 340

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
           E    S +  + L+N+ +    ++ +GG++ IS++ ++ E ++ + K  G          
Sbjct: 341 EIEGDSDKLKQALINIILNGIQAMEQGGRLEISLKKTEKEESVITFKDEGRGIEKR-IVD 399

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           QI +    +      +       +  E++  +      +    +   L 
Sbjct: 400 QIFNPFFTTKEKGTGLGLSITHRIIEEHQGSIEVTSEINRGTEIGIRLP 448


>gi|327478670|gb|AEA81980.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 992

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + ++I        + + L S + H++ +P+ +I  +L L+           ++Q++ ++ 
Sbjct: 748 LVRDITERKRIERMKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPTMLQMLTIAH 807

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111
            +++   + +         V   + L      +   + +       +  +          
Sbjct: 808 QNSLRLGRLVDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAKHGVYLQLEPL 867

Query: 112 --------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L NL   A    P GG V++  Q         ++  G     PE 
Sbjct: 868 PTLQLIADDDRLQQVLANLISNAVKFSPEGGTVSLGAQQRGAWVRIWVRDQGPGI-APEF 926

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I                   +       L      R+  +    H       L 
Sbjct: 927 HARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELP 983


>gi|310827868|ref|YP_003960225.1| two-component sensor histidine kinase [Eubacterium limosum KIST612]
 gi|308739602|gb|ADO37262.1| two-component sensor histidine kinase [Eubacterium limosum KIST612]
          Length = 305

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 71/233 (30%), Gaps = 27/233 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMS 59
           + KN   N        L+ S + HD+ +P+ ++   L++L+   +E E  +    ++   
Sbjct: 79  LKKNERANRQ------LMTS-LSHDVRTPLTSLIGYLDVLNSGKVEAEERKRYLGIAWSK 131

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SW 104
           A     ++ + F +             E+ I +         +                 
Sbjct: 132 AYDLKDYVDILFDWFKLESKEYHFYFEERDICELTRDGIIGWIPLFEENGLNYTFHIPDE 191

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
             +    +R   +IL NL   A              +  K+     +K +G+     +  
Sbjct: 192 EYKVWIDARSWNRILNNLIQNAVKHSGCSALEIGVERTQKSM-KLWVKDDGSGIVPDQLP 250

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F ++   +   +     +       L  EN   +L +       + +  L 
Sbjct: 251 YIFERLYKCDASRSGAGSGLGLAITKELVQENGGTILADSALCQGTIFTVTLP 303


>gi|300702447|ref|YP_003744047.1| sensor histidine kinase in two-component regulatory system wtih
           kdpe, regulation of potassium translocation [Ralstonia
           solanacearum CFBP2957]
 gi|299070108|emb|CBJ41397.1| sensor histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [Ralstonia
           solanacearum CFBP2957]
          Length = 937

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55
           A++    + S  L   L + + HD+ +P+  +    E L         +Q      +   
Sbjct: 691 AQDALVRIESERLRNSLLAAVSHDLRTPLTGLVGMAETLLRTQPPLSPLQAEAAEAIGEQ 750

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQVSWTGEKIDL 111
           +    ++    + +A      +   +    IE+++    +        V V    +    
Sbjct: 751 ARRMRVMVTNLLDMARLQNHDIKLRLEWQSIEELVGAALKGTPLPAHTVVVDDLADLPLQ 810

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGNLARFPE- 162
             +   +   L  +   +       T               +E    ++ +G        
Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISAGVEHDTVRGDEMRVRVRDHGPGVPAGAE 870

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G+ ES      +       +   +  R+  E   D        L 
Sbjct: 871 RVIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPTDGGACFVVALP 924


>gi|228996539|ref|ZP_04156178.1| hypothetical protein bmyco0003_11260 [Bacillus mycoides Rock3-17]
 gi|229004190|ref|ZP_04161991.1| hypothetical protein bmyco0002_11550 [Bacillus mycoides Rock1-4]
 gi|228757051|gb|EEM06295.1| hypothetical protein bmyco0002_11550 [Bacillus mycoides Rock1-4]
 gi|228763171|gb|EEM12079.1| hypothetical protein bmyco0003_11260 [Bacillus mycoides Rock3-17]
          Length = 400

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 69/224 (30%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57
           +    N     L+  + + I H++ +P+ +    L+LL      +E  +L      R   
Sbjct: 173 QEELINAEKFHLIGEMAASISHEVRNPLTSTKGFLQLLQSEECSEEDRKLYTEIAIRGIE 232

Query: 58  MSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A              + L  +  I  +           + S       
Sbjct: 233 QANHVLTDYLTFAKPSIEKEQVLQIEDELLHAVSLITPLANLTNVRITYTKQSNIFCISG 292

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG + +++  S  +   ++K  G      E+  ++   
Sbjct: 293 EKQKFNQCLLNILKNCIEAMPKGGDLILTLIPSHTQIQLAIKDTGIGMDL-EQLKRLGSP 351

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++      D          
Sbjct: 352 FYSTKEKGTGLGMMVVFSIVKAMGGKIDISSEKDIGTTFLLTFP 395


>gi|118616307|ref|YP_904639.1| two component system response phosphate sensor kinase, PhoR
           [Mycobacterium ulcerans Agy99]
 gi|118568417|gb|ABL03168.1| two component system response phosphate sensor kinase, PhoR
           [Mycobacterium ulcerans Agy99]
          Length = 481

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 54/211 (25%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   ++  I   +    + +  +             
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLTLARLDVQRPLE 317

Query: 81  IGLGDIEQVIEDFIAVDKRVQV-----------SWTGEKIDLSRERAKILLNLFMVAHAS 129
               D+  +  D +   + +               T E +       ++L NL   A   
Sbjct: 318 RNRVDLLVLAADAVHDARAIDRKRAITVEVLEGPGTPEVLGDEPRLRQVLSNLVGNALQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V  +    +  +   G      +    F +    +           +   
Sbjct: 378 TPDSADVTVRVGTAGENAVLEVADKGPGMPAEDAARVFERFYRTDSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVHSLVKAHGGDVTLTTAPGEGCCFRVTLPR 468


>gi|298209253|ref|YP_003717432.1| sensor histidine kinase/response regulator [Croceibacter atlanticus
           HTCC2559]
 gi|83849180|gb|EAP87049.1| sensor histidine kinase/response regulator [Croceibacter atlanticus
           HTCC2559]
          Length = 364

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 15/227 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
           K    +   + ++  + + I H++ +P+  I    EL+ +            D++++   
Sbjct: 138 KRQMEHADRLGILGEITAGIAHELNTPLANILGFSELIKDEVKGNSNIAEDLDKIIKNAI 197

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWTGEKID 110
            S       L F          ++ +  + +   +     +                   
Sbjct: 198 FSREVVKKLLFFSCEMPQEMQELNLVTSVYNSLSLLEASFKKANVEYNVKIEDKELFVRA 257

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +  +I+ NL + A    P  G VTISV ++K   +F +   G      E   ++   
Sbjct: 258 DKVQLMQIIFNLIINAIYFTPEHGLVTISVSETKMHIVFKVSDEGLGL-PEEIIEKVFQP 316

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    +   +    V  +   +K  +  +         +  L K
Sbjct: 317 FFSTKPTGEGSGLGLSVVHGIVTSHKGTITAKNNKIKGATFTVCLPK 363


>gi|229177965|ref|ZP_04305337.1| hypothetical protein bcere0005_13280 [Bacillus cereus 172560W]
 gi|228605453|gb|EEK62902.1| hypothetical protein bcere0005_13280 [Bacillus cereus 172560W]
          Length = 423

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESISPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFVRITFTDNGIGIHPA-IQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|262195449|ref|YP_003266658.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262078796|gb|ACY14765.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 928

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      ++  + +   + + H+I +P+  +    +LL + G+  E  +L+     SA
Sbjct: 285 LVQAREDAQAASRVKSQFLANMSHEIRTPLNGVLGMADLLLDTGLSPEQRELLDALQSSA 344

Query: 61  IIRL--------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--W 104
                               + +       ++ +        V      ++  V      
Sbjct: 345 NALRGLIEDVLDISKIEAGKLEIEAVSFPLLELVYEAARAIAVRAQEQGLELIVDAEPAL 404

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +       +I+LNL   A    P G  V    Q +      S++  G       + 
Sbjct: 405 PARVLGDPVRFRQIVLNLLSNAVKFTPAGEVVVRVRQRADEHIELSVRDTGVGVPEERRE 464

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    DG+         +       LA     +L  E  D    V S  L 
Sbjct: 465 AIFESFTQSDGSTTRRFGGTGLGLTICRELAERMGGKLWYEPGDQGGSVFSVSLP 519


>gi|237653560|ref|YP_002889874.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
 gi|237624807|gb|ACR01497.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
          Length = 386

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 61/238 (25%), Gaps = 26/238 (10%)

Query: 2   AKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
                  L    +  L A+  + + + H + +P+ A       L +  ++          
Sbjct: 138 TDTHRMRLTAERNERLAAMGEMVAGLAHQLRTPLAAALLYTGNLRQPELDPAQRAMVADR 197

Query: 50  -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++ +R         L F R              L ++   +E      +    +     
Sbjct: 198 ALERLRYLERLIRDMLLFARGDSAGRQRFAVCELLAELAHTLEPVARARQVAFAADCACG 257

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK------------NENIFSLKINGN 156
                   K L         +  +  +   +++                   F+++ +G 
Sbjct: 258 AAELVGDRKALGGALTNLLENGIQACEAGGTLRCEAVLVGAADAGVGAPAVRFTVRDSGR 317

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   ++ +    +  +   +       +A  +   +            + ++ 
Sbjct: 318 GI-APELQERLFEPFFTTRAEGTGLGLAIARGVARAHGGDITLRSAPGQGAEFTLVVP 374


>gi|116748078|ref|YP_844765.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697142|gb|ABK16330.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 588

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 57/237 (24%), Gaps = 29/237 (12%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------------DEVMQ 51
              L +  L ++  L + + H+I +P+  I    +L+ ++  E             E M 
Sbjct: 338 RQLLQASKLASIGELAAGVAHEINNPLAVILTENQLVRDMADEAASFDGEFKQQLYESMD 397

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTG 106
            I           + +        S   ++ +          + +       ++   +  
Sbjct: 398 QIDAQIHRCSRITQNLLRFSRRIKSKAEMVDINACFAEVIELIQKRAQTSGVQIVAEFEP 457

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFSLKINGNLAR 159
               L  +  ++   L       +                  + +N     +   G+   
Sbjct: 458 GLPSLLADAFQLEQVLLNCVTNGIDAHEGKPYGTIRVKTRHDEKRNGIEIRISDTGSGI- 516

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +I D    +        +       +       +               L 
Sbjct: 517 PPEHLDRIFDPFYTTKPVGKGTGLGLSISYSIIKSLGGEISVNSEVGKGTDFIIFLP 573


>gi|320333043|ref|YP_004169754.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319754332|gb|ADV66089.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 1349

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 65/237 (27%), Gaps = 28/237 (11%)

Query: 6   CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM 58
                +  L  L        S + H+  +P+  +   LE LL++  +     + + ++  
Sbjct: 327 QERARAEALAELDRAKTTFFSNVSHEFRTPLTLMLGPLEELLNDADVTPAQRRELDVTHR 386

Query: 59  SAIIRLKFMRLAFGYTGSV---------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +A+  LK +     +T                   +         ++E      +     
Sbjct: 387 NALRLLKLVNTMLDFTRIEAGRAEATFQATDLAALTADLASAFRSLVEGAGLQFEVTCPP 446

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            +           K++LNL   A      G       +D  +     +  +G      + 
Sbjct: 447 LSEAAYVDHGLWEKVVLNLLSNAFKFTFEGRIRVTLREDEGHF-TLQVTDSGTGIPAADL 505

Query: 163 --KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +     G    + +   I    V  L   +   +  +         +  L K
Sbjct: 506 PRVFERFHRVEGARGRSFEGTGIGLALVRELVTLHGGDIRVDSEVGVGTTFTVTLPK 562



 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
               +  +   ++  A + S   HD+  P+  I +   LL            D+ +     
Sbjct: 1111 THQLERSNRELEQFAYVAS---HDLQEPLRTIGSFTNLLARRYAGQLDDRADQYINFTLS 1167

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLS 112
            ++      ++ +         VD+   +   E V +    +      +      + +   
Sbjct: 1168 ATERLKRLIQDLLAYSRTRQPVDAFTHVDTAEVVRDVIADLGDLRDRTGGVVDAQALPSV 1227

Query: 113  RERAKILLNLFMVAH------ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                ++L ++F              R   V +          F ++ NG          +
Sbjct: 1228 HGSPELLRHVFQNLIGNALKFHHPDRAPHVRVRAVRVPGAWQFDVQDNGVGIEPAY-HAR 1286

Query: 167  IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I             + + I    V  +   +  +++     D     S  L 
Sbjct: 1287 IFGIFQRLHAVGEREGNGIGLAIVKSIVERHGGQVMVHSTPDQGSTFSFTLP 1338


>gi|304405489|ref|ZP_07387148.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304345528|gb|EFM11363.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 505

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 62/234 (26%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRL 55
           +  +      + + +    +   H++ +P+ +IH  LE+L     +        +  +  
Sbjct: 268 LETSFEAEREAKEHMRRFIADASHELRTPLTSIHGFLEVLLRGAADKREQLYPALNSMHG 327

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGE 107
            S      ++ + +      +    +               +         + ++     
Sbjct: 328 ESTRMKKLVEDLLMLAKMDRAPQLRMSPILLDELMEEMDPHLRMLAGERTVQFELQQAVS 387

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA---RFPE 162
               + +  +++LNLF  A         +           + I S+  NG        P 
Sbjct: 388 ANGDADQIKQVVLNLFHNAVQHTDAHSGIIQVTVSDRPAGQPIVSITDNGPGIAAEHVPH 447

Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +           +       +   +   +  + +       +  L 
Sbjct: 448 VFERFYRSDSSRTRKHGGAGLGLSISQSIVKAHGGEITVDSVIGRGSTFAFKLP 501


>gi|256752369|ref|ZP_05493230.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|307725254|ref|YP_003905005.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
 gi|256748780|gb|EEU61823.1| histidine kinase [Thermoanaerobacter ethanolicus CCSD1]
 gi|307582315|gb|ADN55714.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X513]
          Length = 461

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64
           L   + S I H++ +P+  + + +E + +   E    +L  L+     +           
Sbjct: 242 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGIWEPTHERLKSLNEEVLRLINIVKDLETLN 301

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 ++L      + + +  +    +        +    +             A++ +
Sbjct: 302 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 361

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 362 NLISNSNKYTPVGGKIKIDFYKDGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRE 421

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +   +   +  E   +        + 
Sbjct: 422 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFIVKIP 460


>gi|255322379|ref|ZP_05363525.1| sensor histidine kinase [Campylobacter showae RM3277]
 gi|255300752|gb|EET80023.1| sensor histidine kinase [Campylobacter showae RM3277]
          Length = 353

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 62/232 (26%), Gaps = 20/232 (8%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLI 53
           +A NI    ++++ +  +     S + H++ +P+  I    E+  +       +E + LI
Sbjct: 119 LAANINLTAAALEKMDYMQKDFISSVSHELKTPLSVISGYCEIAQDETDETRRNEYLGLI 178

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108
           +  + S     + M L           +             A     +            
Sbjct: 179 KEQANSLSRLCEDMLLLSRLDSQAGVNLDENVRVDEQLRKAAAMLMQKYDGREFDLDLPA 238

Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
                 +   A+I +NL   A         V+   +         +   G         +
Sbjct: 239 VSVRSNASMLAQIWINLMDNALKYSAADVGVSCCEEGDGLVVR--ISDEGAGIEAKKLEK 296

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +              +    V  + H     +  E        +S ++ 
Sbjct: 297 IYDKFYQCEESHKGKGSGLGLSIVRRIVHLLGGEISYESEPGRGTSVSVMIP 348


>gi|229018840|ref|ZP_04175687.1| hypothetical protein bcere0030_33570 [Bacillus cereus AH1273]
 gi|228742461|gb|EEL92614.1| hypothetical protein bcere0030_33570 [Bacillus cereus AH1273]
          Length = 510

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 334

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       + +    + ++   ++   +     + +       D+
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIHTCNVQALIEEVVTFILPTAVMHSVHIIMDHFDYISDI 394

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQI 167
             +  ++   L  +   ++            +     +     +   G      E+  ++
Sbjct: 395 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGI-PEERMARL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 500


>gi|229075533|ref|ZP_04208520.1| hypothetical protein bcere0024_33430 [Bacillus cereus Rock4-18]
 gi|228707512|gb|EEL59698.1| hypothetical protein bcere0024_33430 [Bacillus cereus Rock4-18]
          Length = 516

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEENKWYVDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       + +    + ++   ++   I     + +     K D+
Sbjct: 341 ISQMESITSQFMAMSKPQVLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDI 400

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167
             +  ++      +   ++                  N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506


>gi|254411811|ref|ZP_05025587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181533|gb|EDX76521.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 562

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           M + +       +L +   S   H+   P+ A+++S ELL++        + ++      
Sbjct: 264 MLQALEREKELTELKSRFISMTSHEFRVPLTAVYSSTELLEQYSHNWAEEKKLKHFNRIK 323

Query: 58  MSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S       +                    ++      D+ + IE  I     +    +G
Sbjct: 324 DSVNRMTTLLDDVLIVNKAESGKLEFNPQPLNLNQLCQDLVEDIELGIGKQHEISWINSG 383

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +   +   L      A    P G  V  +    + E IF +K  G     PE 
Sbjct: 384 RASKACMDEKLLRHILTNLLTNAVKYSPLGSTVQFNCHCREQEVIFEIKDQGIGI-PPED 442

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +    +     I    +    V      +  +L               L 
Sbjct: 443 QKRLFESFHRAKNVGNIQGTGLGLSIVKKSVDLHGGKLAVHSEVGVGTTFKVTLP 497


>gi|167039422|ref|YP_001662407.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
 gi|166853662|gb|ABY92071.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter sp. X514]
          Length = 451

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 64/219 (29%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL--------- 64
           L   + S I H++ +P+  + + +E + +   E    +L  L+     +           
Sbjct: 232 LRKQMTSDIAHELRTPLTTLQSHIEAMLDGIWEPTHERLKSLNEEVLRLINIVKDLETLN 291

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 ++L      + + +  +    +        +    +             A++ +
Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFVIEDNGMGISKDDIPFIFERFYRGEKSRNRE 411

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +   +   +  E   +        + 
Sbjct: 412 TGGSGIGLSIAKAIVLAHGGEISVESEINKGSKFIVKIP 450


>gi|149919887|ref|ZP_01908363.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149819334|gb|EDM78767.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 657

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            +     L +  + A+  L S I HD  + +  I      L    I+++  +L+      
Sbjct: 284 RRLQTELLQTHKMQAVGRLASGIAHDFNNLLTVILGGASFLGMGAIDEDQRELVADIEDA 343

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            + ++      L F R        V+    +   +++    +     + V    E   + 
Sbjct: 344 AQHAAALTGQLLAFTRREVVQRRRVEVAGAIEQCQRLFARLLDHGIELHVEVAPELPAIR 403

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKF 164
            + ++++  +      A  ++P GG++ +          + E   S++ +G      + +
Sbjct: 404 FDESQLIQIVMNLVLNARDAMPSGGRIELRAVTGSGPSGEPELHLSVRDDGEGM-DADTY 462

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +      +    +  +      RL  E       V +  + 
Sbjct: 463 ARIFEPFFTTKRTGTGLGLATIKDIVVAAGGRLSVESALGQGSVFTCCIP 512


>gi|148654963|ref|YP_001275168.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148567073|gb|ABQ89218.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 358

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+ +   +    +   L   + H++ +P+  +   LE L +     + E +  ++    
Sbjct: 122 MAETLA-QVERQRI--TLIGNVAHELRTPLAGLEGYLEGLLDGVLPGDPETIHAMQHEVR 178

Query: 59  SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                +  ++                 D +  +  I   +   +            EK  
Sbjct: 179 RLRKLVDDLQHLSRVEAGQVAIQPQRFDVVALVHRIVAHLRPQLIEQCLQIAIEAPEKEA 238

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                    A++L+NL   A    P  G +TI V+         ++  G        P  
Sbjct: 239 LAYADPDRTAQVLINLIGNAIRYTPEDGCITIRVRCDPTHVQVIVEDTGIGIPAEALPYL 298

Query: 164 FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
           F +      +         I       LA      +           V + +L +
Sbjct: 299 FERFYRVDPSRSRASGGSGIGLTIARHLARAMGGEITAASPGIGKGSVFTLILPR 353


>gi|329850157|ref|ZP_08265003.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328842068|gb|EGF91638.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 757

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 69/230 (30%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           +   +    ++ +  +   + + H++ +P+ +I     LL E            ++   S
Sbjct: 378 LEDAMVDANAAAEAKSQFLATMSHELRTPLTSIIGFSALLREVVESEEPRRYSQRIWTAS 437

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWTGEK 108
                +    +  +    G ++  +      ++++           A    + V    + 
Sbjct: 438 QGLLALINDILDHSKLEAGQLELDLAPCSANELMQEVADLLEVQAHAKGLFLTVDTDDDM 497

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQ 166
             +  +  ++   L  +A  ++   G   +++      +    ++   G     PE   +
Sbjct: 498 PLMLLDEVRMRQILINLAGNAVKFTGDGGVTIALHWRGDRLQVTVTDTGPGI-SPEGHKR 556

Query: 167 IVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +   T +   +       L      R+  E    +  +    + 
Sbjct: 557 LFKRFSQVDHTTNGTGLGLMICKQLVELMGGRIGVESSPGNGSMFWFDIP 606


>gi|319442463|ref|ZP_07991619.1| two-component system sensor kinase [Corynebacterium variabile DSM
           44702]
          Length = 511

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 57/214 (26%), Gaps = 22/214 (10%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM------SAIIRLKFMRLAFGYTGS 76
            H++ +P+ ++    +L      +D  M + R+SS            L  +R+  G    
Sbjct: 284 SHELRTPLTSVRGYADLYKSGATQDADMVIDRISSEAGRMSLLVEDLLTLVRMDEGRPMR 343

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHAS- 129
            + +  L      +E+  A      VS + +   +           +++ NL   A    
Sbjct: 344 REPVDLLDLGIAAVENAKAGFPGRSVSLSNQTRSIPVTIGDSDRLHQVIGNLMTNALRHG 403

Query: 130 ----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST--IDSHD 180
                                    +  +G      +    F +    +V  +       
Sbjct: 404 GADASVTLRLTQSDPGVQPATVGVDVIDDGAGIPAEDVPHLFERFYRADVSRSRASGGSG 463

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V  L   +   +  E            L 
Sbjct: 464 LGLSIVKSLVEAHGGTITVESELGEGTTFHVRLP 497


>gi|309390020|gb|ADO77900.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 593

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 76/218 (34%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK---FMRL 69
             + + H++ +P+ +I   L+ L     ++    +  +Q+I+  +      +     +  
Sbjct: 374 FVANVSHELRTPLTSIIGYLDTLLESDIEDQDTRERFLQIIKEETDRLSNLINDLLNLSK 433

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERAKILLNL 122
                  +++      +++V+       K+ ++               +  +  ++L+NL
Sbjct: 434 IESQIFKLEADNFEKIVKKVVNLLSQKAKKQKLELNLEIDNNLPLVYMVREQIKQVLINL 493

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
              A      GGKV + V+  K++  FS++ NG      +   +I +            +
Sbjct: 494 IDNAIKYTAEGGKVEVKVKQEKDKIYFSVQDNGMGIPQAD-QERIFERFYRVDKARSRAL 552

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    V  +  ++   +  +  +         L+
Sbjct: 553 GGTGIGLSIVRNIIKQHGSEIQLKSREGVGSEFYFYLK 590


>gi|303238186|ref|ZP_07324722.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302594232|gb|EFL63944.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 393

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           + +         +    + + I HD+ +P+ +I   +E +LD+  I  E +        S
Sbjct: 150 LKEGEKVKSEYEENRKTIIANISHDLKTPMTSIQGYIEAILDDTVISREDLSKYLKIIYS 209

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----------------DKRVQV 102
               +  +         +D      +  +V                            ++
Sbjct: 210 NSEYMNKLIDDLFLFSKLDMQKLDFNFAEVEAIPFFNDLFEEFELEFQERGFKFAYTNKL 269

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFP 161
                    ++   +I  N+   A                 + +     ++ +G      
Sbjct: 270 EENVVFNIDTKRIHQIFRNVIGNAVKYRGGASLSLWVDLYMEKDFVCVDVRDDGRGIGED 329

Query: 162 ---EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F +    + E T D  S  +       L   +  ++    ++      +  + 
Sbjct: 330 KLEHVFDRFYRVDTERTKDLLSTGLGLAIAKELVEAHGGKISASSVEGSGTCFTIRIP 387


>gi|283853026|ref|ZP_06370283.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283571563|gb|EFC19566.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 477

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNL-SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-------------- 43
           M +        +  +    +L + + H+I +P+ A++   E +                 
Sbjct: 227 MEQEYQAKYYQAEKMATIGMLAAGVAHEINNPLTAVYGLAEGIRRRLPAIRAAVDEPLFA 286

Query: 44  ---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                 + ++   R         L F R        V     + D   ++   +    + 
Sbjct: 287 DVAEYTETILMECRRCRDIVRSMLSFSRPHTLAFSPVCLNEVVTDTLNILRGHLDERGQQ 346

Query: 101 QVSWTGEKID-------LSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLK 152
            +  T    D          +  ++LLN+   A  ++P        +  ++ N    S++
Sbjct: 347 GLRLTVNLFDSLPTVPGDEAQLKQVLLNILANAMDAIPGEGEITVTTHPENDNTVNLSVE 406

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G     PE   ++ +    +        I       +  E+   +            +
Sbjct: 407 DTGCGI-PPENMDKLFNPFFTTKPVGKGIGIGLAACYSIVREHHGVIEVASEVGLGTHFT 465

Query: 211 ALLE 214
             L 
Sbjct: 466 VKLP 469


>gi|229061002|ref|ZP_04198356.1| hypothetical protein bcere0026_30960 [Bacillus cereus AH603]
 gi|228718371|gb|EEL70005.1| hypothetical protein bcere0026_30960 [Bacillus cereus AH603]
          Length = 429

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +     +     + + H++ SP+ +I     +L +           + +
Sbjct: 187 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105
           I   +         +            L  +            V        + +     
Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 306

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + + ++ +     ++  N+   +       G + +S++         +   G      +
Sbjct: 307 LQTVKVTADHDLLNQVWTNILRNSIKFSEDTGVINVSIKQDIKNVTILISDTGIGIHLDD 366

Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  D   +    V  +   ++  +  +            L 
Sbjct: 367 QKRIFERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLP 423


>gi|116620474|ref|YP_822630.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223636|gb|ABJ82345.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 940

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 66/241 (27%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53
           A+        ++ + +L   I HD  + +G+I  + EL+     +             + 
Sbjct: 556 AQVEALARQKLEGLGVLAGGIAHDFNNLLGSILATSELVLSELPDGTPASEGIISIKNVA 615

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++      + +         ++D  + + ++ Q++   I+    + V        +  
Sbjct: 616 DRAAEIVRQMMAYSGQENTIFEALDLSVLVREMLQLLSVSISKRAHLVVDLPENLPAIRA 675

Query: 114 ERAKILLNLFMVAHASLP--------------------RGGKVTISVQDSKNENIFSLKI 153
             A++   +  +   +                             +          ++  
Sbjct: 676 NPAQLRQVVMNLITNASEALGESSGVITVGLAHVRPAAPRPAGHPAEITETGHVRLTVAD 735

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G+     E   +I D    +      +    V  +  ++   +    +         +L
Sbjct: 736 SGSGM-TEEIRARIFDPFFTTKFAGRGLGLAAVRGIIRDHGGSISVFSVPGQGSRFEVVL 794

Query: 214 E 214
            
Sbjct: 795 P 795


>gi|169825762|ref|YP_001695920.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
 gi|168990250|gb|ACA37790.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
          Length = 466

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +PI  I    ++L +  +  +  Q           RL  +         +D 
Sbjct: 239 SSIAHELRTPITFIKGYTDILYKRDLSAQDRQKYLAIIREETNRLSRLIKDLFDLAKMDE 298

Query: 80  LIGLGDIEQVIEDFIA---------------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124
              + + + +                     +   V                +I++NL  
Sbjct: 299 NSFIIEKQNLDLQAFFTGIKGKLSPAFQEKDIHFEVCCENGLTLWADEARLEQIIINLLN 358

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179
            A     +G   T++V+         ++  G      +    F +      +    +   
Sbjct: 359 NALTYCGQGDTTTVNVKKVNGVLTIIIRDTGRGIPNKDLPFIFERFYRVEKSRSRALGGS 418

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  L   +   +  +   +   V     +
Sbjct: 419 GLGLAIVKELVQAHGGEVTVKSELNKGTVFELSFK 453


>gi|152976420|ref|YP_001375937.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025172|gb|ABS22942.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 424

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 62/224 (27%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LLD                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLDSTEDVKNKEYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S     I  
Sbjct: 256 RAEQIISDYLNLARPQIEQKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISENLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++      + ++     +  I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQENKGYLKVTAIQKGDTIIVRVKDSGIGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L               L 
Sbjct: 375 YYSLKEKGTGLGLMVTYRILQAHNGTLEYSSESGKGTEAIITLP 418


>gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
 gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Prevotella oris C735]
          Length = 1337

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 21   RICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
             + H+I +P+  I    E L             +Q I  +S      +  +     +  S
Sbjct: 820  NVSHEIRTPLTVIIGLAESLLHTQRFTADIYNKLQGIYRNSNLLRDLISELLDFKKHEQS 879

Query: 77   VDSLIG-----------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            +  L             + ++ +   +   V   V      E     R+  K++ NL   
Sbjct: 880  LAHLCVEAVDWSAFVGSICNMFKEYANSNDVTLNVNEGTDAEVWIDKRQMRKVVNNLISN 939

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHD 180
            A    P+GG V ++ +    + I  +   G      +              +        
Sbjct: 940  ALKHTPQGGNVNVTTECDGRQVILRVTDTGKGIAETDLAHVFDCFYQARDFESLTEMGTG 999

Query: 181  IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I       +  ++   +  + + +        L 
Sbjct: 1000 IGLNLTQNIVQQHHGTISVDSVINEGTTFVVTLP 1033


>gi|283851971|ref|ZP_06369247.1| Osmosensitive K channel His kinase sensor [Desulfovibrio sp.
           FW1012B]
 gi|283572695|gb|EFC20679.1| Osmosensitive K channel His kinase sensor [Desulfovibrio sp.
           FW1012B]
          Length = 896

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVG---------------I 45
           AK          L A L S + HD  +P+ AI  S E LL                    
Sbjct: 653 AKATLVEAEREKLRAALLSTVTHDFKTPLAAIAGSAESLLALGEATTATVRRSLEENIVA 712

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           E   ++ +  + +                  ++ ++G               +       
Sbjct: 713 EASRLERLVDNLLRIAALESGSVAPDIKPIPIEEVVGSALTRLEGLLVGHEVRLDIPDDL 772

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++L+NL   A    P G ++ +       + + ++   G      +   
Sbjct: 773 PPIPMDEVLMEQVLINLLENAAKHTPPGTEIRVGAAVRGRQALVTVSDTGPGLPPGDPEK 832

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
            F +   G+  S    + +       +   +   +  +          +  L 
Sbjct: 833 LFERFQRGDRASAA-GYGLGLAICRAVVKAHGGTITADQTGGQTGAAFTITLP 884


>gi|171319008|ref|ZP_02908135.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171095763|gb|EDT40716.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1088

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 66/244 (27%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A  +     + +      +   + + H+I +P+ AI  +LELL    ++ E    +   
Sbjct: 468 LAHELRNAKQAAESANAAKSAFVAAMSHEIRTPLNAILGNLELLSLATLDAEQRNRLSTI 527

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------------- 101
             S+   L  +     ++      +    I+    +       +                
Sbjct: 528 RTSSDGLLAIISDILDFSKIEAGEMAFERIDFDCVELTGRALAMFAPGARAKGLRLYGQF 587

Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGN 156
            V              +I+ NL   A      G        +   +     + S++  G 
Sbjct: 588 DVDSALSMNSDPVRIGQIINNLLSNAVKFTSAGHVTLRLATEYAEDGATLLLMSVEDTGI 647

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               PE+  ++          +        +      LLA      +  E   +     +
Sbjct: 648 GM-TPEQQERLFSAFSQGDASIHRRFGGTGLGLALCKLLAQALGGSIHAESTPNVGSRFT 706

Query: 211 ALLE 214
             L 
Sbjct: 707 VRLP 710


>gi|170758421|ref|YP_001787843.1| putative phosphate regulon sensor protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169405410|gb|ACA53821.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 569

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 67/223 (30%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFM- 67
            ++     + + H++ +P+ +I    E L   D+    ++ +Q+I   +      +  + 
Sbjct: 344 ENMREQFVANVSHELKTPLTSIKGFSETLKYVDDKKNREKFLQIINDEADRLTRLINDIL 403

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEK--IDLSRERAK 117
                  +        +D    +  +  +  +     + R+ +        I    +  +
Sbjct: 404 VLSNIEKQKQELIKEKIDLNELIEKVYCLVKKSAEDKNIRINIVGEKVPLLIGNKDKYNQ 463

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +++NL   A       G V+I  +  K   +F ++  G        + +I +        
Sbjct: 464 MIINLVDNAIKYTEPNGYVSIGTKQDKGNIVFWVEDTGVGISEEHLY-RIFERFYRVDKA 522

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +      ++  +            + 
Sbjct: 523 RSRAEGGTGLGLAIVKHIVLSINGKIEVKSEPKRGTKFIVKIP 565


>gi|327482286|gb|AEA85596.1| two-component sensor PilS [Pseudomonas stutzeri DSM 4166]
          Length = 530

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 67/228 (29%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMS 59
             I      + L +L  L + I H+I +P+GAI ++ +LL E   ++    +L ++    
Sbjct: 296 SQIAQKAQQLKLASLGRLTASIAHEIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDH 355

Query: 60  AIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +           +  R        +D    L          ++  + V +   G  +   
Sbjct: 356 SRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQQTVHLETIGSSLQTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKF 164
            +  ++   L            +              ++ +  +  +  +G      +  
Sbjct: 416 MDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLH 475

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             + +    +      +  Y    L   N+ RL      +       +
Sbjct: 476 N-VFEPFFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIV 522


>gi|307634828|gb|ADI84131.2| sensor histidine kinase response regulator [Geobacter
           sulfurreducens KN400]
          Length = 740

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 32/245 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            + +   L  +  + A+  L   I HD  + +  I     +L        +     D+++
Sbjct: 355 RREMLQRLGQAHKMEAVGRLAGGIAHDYNNKLTVILGYAHVLKLTGFQSKEAPEQLDQII 414

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGE 107
           +    S       L F R        VD    +    + +   I  D  +          
Sbjct: 415 RAAEHSRDITRQLLAFTRSERVNPVRVDLNRLISQSSKSLTRLIGEDITLSHVAGADLWP 474

Query: 108 KIDLSRERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLK 152
                 +  ++L+NL M A  +               L R     +         + ++ 
Sbjct: 475 VRIDPTQADQLLMNLVMNARDAIAGTGSVTIATSNVVLDRATVRHLQGASPGEYVLMTVS 534

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G     PE    I +    +        +    V  +  +N   +  E       V S
Sbjct: 535 DTGCGM-DPEVMEHIFEPFYTTKEMGKGTGLGLATVYGIVRQNGGAISVESEPGGGSVFS 593

Query: 211 ALLEK 215
             L +
Sbjct: 594 IYLPR 598


>gi|262171514|ref|ZP_06039192.1| signal transduction histidine kinase [Vibrio mimicus MB-451]
 gi|261892590|gb|EEY38576.1| signal transduction histidine kinase [Vibrio mimicus MB-451]
          Length = 573

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 65/246 (26%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + + +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 185 LQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRSDSTSYQV 244

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLDQSLVYHRQIAQDKGV 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
             + +   +   E    S    +IL N+   A     + G+V I +   ++     ++  
Sbjct: 305 QFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTKQ-GRVDIQLNYIEDGIDIQVQDT 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  +   D   +
Sbjct: 364 GIGIEPKRI-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTINVDSKIDIGTL 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTLRIP 428


>gi|229166399|ref|ZP_04294156.1| hypothetical protein bcere0007_13720 [Bacillus cereus AH621]
 gi|228617141|gb|EEK74209.1| hypothetical protein bcere0007_13720 [Bacillus cereus AH621]
          Length = 421

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L +      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQDNVSPSNKELFKSLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------KI 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYDFSAELDGVLVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +       + I+     N    + K NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEEPLSIQITSYRLDNFVRITFKDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      +     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKVTSNQN-GTTFTISIP 409


>gi|218902667|ref|YP_002450501.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|218540214|gb|ACK92612.1| sensor histidine kinase [Bacillus cereus AH820]
          Length = 420

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFXSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|307152518|ref|YP_003887902.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306982746|gb|ADN14627.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1107

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 59/232 (25%), Gaps = 19/232 (8%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
            A+      S+ DL       + HD+  P+G I +  +LL            ++ +  +  
Sbjct: 869  AQKEELARSNQDLE-QFAYIVSHDLQEPLGIIASYGQLLKRHCQGQLDAKAEKYINQMLT 927

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------- 108
            S      ++  +           +   +     + +    ++  ++ +            
Sbjct: 928  SVNRMRQQIDDLLAYSRVGTRTKTFQLVDLNWCLRQAIDNLEILIKKNGATININSSLPT 987

Query: 109  -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFP---EK 163
             +    +  ++  NL   A         V       +       ++ NG           
Sbjct: 988  LMADGSQLIQLWQNLISNAIKYHGELPPVIDIACQQRGNVWLFSIRDNGIGIEPQYSERI 1047

Query: 164  FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F      + +       I       +   +  ++  +            + K
Sbjct: 1048 FQIFQRLHTQEEYSGTGIGLAICQRIIQRHGGKIWVQSQLGKGATFYFTIPK 1099


>gi|197122933|ref|YP_002134884.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196172782|gb|ACG73755.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 379

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 62/219 (28%), Gaps = 10/219 (4%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSA 60
               +  +     L   I HD+ +P+G I  SL +L     +     + +  I      A
Sbjct: 161 QQARVERLSTFGQLVGSIGHDLRNPLGVIETSLYILRGRVGDDERARKHVDRIGEQLGVA 220

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRER 115
              +  +             + LG +       +     V V                + 
Sbjct: 221 NGIITNLLDMIRNRPLAREPVDLGQVIAAAAGAVKHAPGVSVAVEGVEGLPAVDGDPGQL 280

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ +NL   A  +    G VT+  Q +      +++  G       +  ++ +  + + 
Sbjct: 281 RQVFVNLLENAAFAAAPAGAVTVRAQHTDGAVEVAVEDTGPGVDPATRR-RLFEPLITTK 339

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +            +  L 
Sbjct: 340 EKGIGLGLALVKRIAERHGGSVEYSDRPGGGARFTVRLP 378


>gi|157146700|ref|YP_001454019.1| sensor protein KdpD [Citrobacter koseri ATCC BAA-895]
 gi|157083905|gb|ABV13583.1| hypothetical protein CKO_02466 [Citrobacter koseri ATCC BAA-895]
          Length = 895

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 56/216 (25%), Gaps = 18/216 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           ALL + + HD+ +P+  +    E+L      E          IR   ++    +  +   
Sbjct: 667 ALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEIRQHILNTTRLVNNLLDM 725

Query: 71  F------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121
                           +       +      +   + +S       +  +     ++L+N
Sbjct: 726 ARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSHPINLSLPAPMTLVHVDGPLFERVLIN 785

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178
           L   A        ++ I            +  NG      +    F +   GN ES +  
Sbjct: 786 LLENAVKYAGSQAEIGIDAHVEDEHLQLDVWDNGPGIPDGQEKSIFDKFARGNKESAVPG 845

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +   +               L 
Sbjct: 846 VGLGLAICQAIVEVHGGTISAHNRPQGGACFRVTLP 881


>gi|119899781|ref|YP_934994.1| putative sensor histidine kinase [Azoarcus sp. BH72]
 gi|119672194|emb|CAL96108.1| putative sensor histidine kinase [Azoarcus sp. BH72]
          Length = 711

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 72/238 (30%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLS 56
           +       + +  L A+  L + + H+I +P   I  +LELL E   E    V+  IRL 
Sbjct: 455 LRTAQRQLVMTEKLAAIGELTAGVAHEISNPTAVIQGNLELLREELGEHATPVLNEIRLI 514

Query: 57  SMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   K +     +            VD    L D   +    ++          G 
Sbjct: 515 DEQVNRIRKIVTKLLQFARPGEFAGYAAAVDVNTVLADCLVLTRQHLSRQGVTVRHEPGT 574

Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---------NIFSLKING 155
                   +E  ++L+NL + A  ++P GG +T++  D                +++  G
Sbjct: 575 LRLVEINEQELQQVLINLIVNAVQAMPAGGTLTLTTADWDERGPGGIVARGVCVTVRDTG 634

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              R  +                  +       L      R+  E +       +  L
Sbjct: 635 QGIRDEDLARIFDPFFTTKKTQGTGLGLSISYSLVERYGGRITVESVPGAGAAFTVWL 692


>gi|30019607|ref|NP_831238.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|229126872|ref|ZP_04255884.1| hypothetical protein bcere0015_13290 [Bacillus cereus BDRD-Cer4]
 gi|229144156|ref|ZP_04272571.1| hypothetical protein bcere0012_13200 [Bacillus cereus BDRD-ST24]
 gi|296502128|ref|YP_003663828.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|29895151|gb|AAP08439.1| Sporulation kinase [Bacillus cereus ATCC 14579]
 gi|228639375|gb|EEK95790.1| hypothetical protein bcere0012_13200 [Bacillus cereus BDRD-ST24]
 gi|228656812|gb|EEL12638.1| hypothetical protein bcere0015_13290 [Bacillus cereus BDRD-Cer4]
 gi|296323180|gb|ADH06108.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 423

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSLSKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQDYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|148266201|ref|YP_001232907.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146399701|gb|ABQ28334.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 476

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 61/218 (27%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
             L S I H+I +P+  I  ++     ELL       + ++ I  +    + +  +M L 
Sbjct: 253 GQLASGIAHEIRNPLNYISLAIDHLKSELLPSCPERGKELESIADNIKEEVRKANYMVLN 312

Query: 71  FGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
           F             V     +     +++D +       V      +   +   +++ N 
Sbjct: 313 FMNYGRPLKLRLHEVRYPELISKAMPLLQDKLNEQHIEVVEDIPADLPPMQVDPELMRNC 372

Query: 123 FMVAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLARFPEKFTQIVDGNVESTI 176
                 +  +       +               +    G+     +   +I      +  
Sbjct: 373 LFNFITNAAQAMPDGGKITLGAAFVAGDNLFRLTFADQGSGIAPNDI-DKIFQPYFTTKE 431

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +  E+   ++ E    +    + +L 
Sbjct: 432 AGIGLGLAITERIIKEHGGEMVVESQLGNGTTFTIILP 469


>gi|256788241|ref|ZP_05526672.1| two component sensor kinase [Streptomyces lividans TK24]
          Length = 503

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 60/204 (29%), Gaps = 13/204 (6%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75
           H++ +PI  +   LEL+ D+    +E ++L+          ++ +       R  F    
Sbjct: 296 HELRTPITIVRGHLELMGDDPAEREETVRLVTDELDRMSRIVEDLLLLAKAERPDFVTPE 355

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            V       D+          +  +      E     +   + ++ L   A      G +
Sbjct: 356 PVQLAELTADVFVKARTLGEREWVLDGVADREAHLDPQRITQAMVQLAQNAVQHTTAGQR 415

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190
           V I  +   +     +  +G   +  +    F +   G     +      +    V  +A
Sbjct: 416 VRIGSRADGSRIELYVADSGPGVQPQDAEVIFERFRRGTARRGVRGTGAGLGLSIVRAIA 475

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +  R+               LE
Sbjct: 476 EGHGGRVDLRTTAGGGATFVLTLE 499


>gi|253996821|ref|YP_003048885.1| Osmosensitive K channel His kinase sensor [Methylotenera mobilis
           JLW8]
 gi|253983500|gb|ACT48358.1| Osmosensitive K channel His kinase sensor [Methylotenera mobilis
           JLW8]
          Length = 914

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 77/230 (33%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLS 56
           A+    ++ S  L   + S I HD+ +P+  I  +   L +    ++        L   S
Sbjct: 671 AQEALISMESERLRNSVLSAISHDLNTPLTTIIAAAGWLKQETEINDKRYEYVSMLNEQS 730

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEKID 110
                + +  + +A   +G V        +E+V          +     + +    +   
Sbjct: 731 IRMKNLVVNLLDMARLQSGKVKLNKQWQLLEEVVGTSLRTMSEVVSKHTIVIDMPHDLPL 790

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164
           +  +     ++L NL   A    P G ++ IS +  +N+   S+   G+        + F
Sbjct: 791 IEFDAVLIDRVLCNLLDNASKYSPAGNRIFISARTQQNDVWISVADEGSGLPENLENQLF 850

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G  ES+     +       +   +  ++       H  + +  L 
Sbjct: 851 EKFTRGEKESSKAGVGLGLSICKAIIEAHDGKIWANNKPPHGAIFTFSLP 900


>gi|222151605|ref|YP_002560761.1| hypothetical protein MCCL_1358 [Macrococcus caseolyticus JCSC5402]
 gi|222120730|dbj|BAH18065.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
          Length = 570

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +PI +I    E L     ++    +  + +I   S    + +  +     
Sbjct: 350 FVANVSHELKTPITSIKGFTETLLDGAKEDKDTLEMFLDIILKESNRIQVLVSELLELSK 409

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKILLNL 122
             +        V+    + +  +V+         +  +++      +    +  ++++NL
Sbjct: 410 IEQANHFNMVKVNLPQKVFNSVEVVYPLAEKKNINFNLELEKNLFVLAEPSKLKQVMINL 469

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTID 177
              A    P   +VT+      +E I  +   G      E    F +    +        
Sbjct: 470 LSNAINYSPEDAEVTVKAYLKADECIVEIIDQGIGIAPEETTRIFERFYRVDKARSRDSG 529

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +       +  E            L+
Sbjct: 530 GTGLGLAIVKHIIEVFNGEIDVESELGKGSTFRIKLK 566


>gi|144901258|emb|CAM78122.1| sensory transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 975

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 72/238 (30%), Gaps = 28/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------------GIE 46
           A++     +     A   + I H++ +P+ AI    EL+                   + 
Sbjct: 719 ARDAAERGNRAK--ATFLANISHELRTPLNAIIGFSELMKHEIFGPLQPPAYRSYVDDVH 776

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQV 102
           +  M L+ L +    +      +       VD    +    ++++   + +    +    
Sbjct: 777 ESGMHLLELINDILDMSKAEAGMTDLVESPVDVAAVVRASLRMMDKRASANGISLEADLP 836

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     R   +ILLNL   A      GG V ++ Q      +  +   G     PE
Sbjct: 837 DGLAFLRADERRIRQILLNLLSNAVKFTDDGGMVRVTAQVDGRGMVIEVIDTGIGM-TPE 895

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++++  V          +   +       L + +   +    I DH   ++    
Sbjct: 896 DMDKVMEPFVQADTRLSRKYEGTGLGLPLTKALVNAHGGTMELHSIPDHGTTVTVTFP 953


>gi|186473345|ref|YP_001860687.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
 gi|184195677|gb|ACC73641.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
          Length = 989

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 55/241 (22%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQL 52
            K +   +      A           + I H++ +P+  I    ++L  +  ++   +  
Sbjct: 519 RKALEDTVRVAKEAAEAANRAKDQFLANISHELRTPLNGILGYAQMLQRDARLDARQLAS 578

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGS----------------VDSLIGLGDIEQVIEDFIAV 96
           + +   S    L  +     +                       I      +  +  + +
Sbjct: 579 VGVIEQSGQHLLTLINDILDFARLGAGKLELQVGEVSLRGFLETIAEIVAVRAQQKRLVL 638

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           +               R   ++LLNL   A     RG       + +     F ++  G 
Sbjct: 639 NYVAAPDLPAVVRVDERRLRQVLLNLLANAVKFTDRGEVTLSVSRGAAGRVRFEVRDTGI 698

Query: 157 LARFPEKFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                            G+         +       L       +          V    
Sbjct: 699 GVSADRLEAIFQPFEQAGDHTRRSGGAGLGLAISRQLVRMMGGEIEVTSSAGEGSVFGFE 758

Query: 213 L 213
           L
Sbjct: 759 L 759


>gi|27363514|ref|NP_759042.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27359630|gb|AAO08569.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio vulnificus CMCP6]
          Length = 595

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L     + + I H++ +P+ AI +  +   L  E      V + +  
Sbjct: 357 LRLTQDELIQAAKLAVIGQMSASISHELNNPLAAIRSFADNGRLFLEKEKYPRVDENLSR 416

Query: 56  SSMSAIIRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S       K  +    +                + L   E +     +   +++  +  
Sbjct: 417 ISALTERMAKISQQLRSFARKSAGDELVEARLMPVLLSANELMKPSLKSARVQLETDFPE 476

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160
             I L     ++   L      A  ++       + +      + +    +  +G     
Sbjct: 477 HDIHLVINTIQLEQVLINLITNAIEAMENTEAKQLRITVDRTLEQQIRVHIDDSGPGI-D 535

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P KF Q+ +    +  +   +       +      +L            + +L 
Sbjct: 536 PAKFAQLCEPFHTTKKNGLGLGLSISQQILAGMNGKLQVSHSPLGGARFTIMLP 589


>gi|313891233|ref|ZP_07824852.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
 gi|313120596|gb|EFR43716.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus pseudoporcinus SPIN 20026]
          Length = 328

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 73/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +  +      S    +++ +++ HDI +P+ +I  ++E + +       E + +  I   
Sbjct: 92  LEASFESLNESEREKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPKEEEKDYLNTISRQ 151

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI------------GLGDIEQVIEDFIAVDKRVQVSW 104
           +      ++ + +        +                +    Q+  +       ++V+ 
Sbjct: 152 TNRLNQLVEELHVVSLNDQRQEVKQTSQVIYIEKLLIEILSEFQLTLERENRTVNIEVAP 211

Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              KI    E  ++I+LNL   A         +TI            +   G   +  + 
Sbjct: 212 EVVKIKSQYEALSRIMLNLVSNAIKYSEVDTALTIKAYRQDQMVRIDVIDQGQGIKEADL 271

Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F ++    +        H +  Y    LAH+    +  E         S  L 
Sbjct: 272 PLIFKRLYRVEMSRNMKTGGHGLGLYIAKQLAHQLGGDISVESQFGKGSSFSVFLP 327


>gi|301062848|ref|ZP_07203441.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300443048|gb|EFK07220.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 444

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 62/213 (29%), Gaps = 18/213 (8%)

Query: 21  RICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG---- 75
            + HD+ +P+  +    E  L +    +   + +      +   L  +            
Sbjct: 227 NVAHDLRTPMTRLRGVAEFALQDATNREACREALGDCMEESERVLTMLNTLMDVAEAETG 286

Query: 76  ----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  + D+ +++ +    +  + +  T           ++L NL   
Sbjct: 287 VMRLQKTALSLSHVIEDVVDLYEIVAEEQNTNVHLNLDKTIMIQADRTRLQQVLANLLDN 346

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQ 182
           A     +GG V++       E + S+   G      E    + ++  G+   +     + 
Sbjct: 347 ALKYGGKGGTVSVESMAEGAEAVISVSDKGMGIAENEISRIWERLYRGDYSRSRRGLGLG 406

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +V  +   +   +  +            L +
Sbjct: 407 LSFVKAIVEAHGGSVQVKSRLREGSTFIVKLPR 439


>gi|256829610|ref|YP_003158338.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578786|gb|ACU89922.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 793

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------ 48
           MA+ I   L  ++ +  + + I H+I +P+  IH  L  +DE+  E              
Sbjct: 556 MARQI-MLLDKINSLGRMAAGIAHEIRNPLTGIHGYLYAMDEICDELPAEPASVLRTTIA 614

Query: 49  -VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            + +            L F +        +D  + + +   ++   +        +    
Sbjct: 615 KIRKAAGKMESVIRRVLDFSKPGTPQLELLDLAVPVQEGLSLMLPTLRKAGITVDTEFSP 674

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFP 161
              +  +R ++   +  +   +            + + +   ++     +  NG      
Sbjct: 675 VPAILGDRMQLEQAVINIVDNAARAVRNNAGAKNIALRIVCEEDRLSLRIADNGPGITPA 734

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++  +I D    +  D   I    V  +  ++   +                 +
Sbjct: 735 DR-ERIFDPFYTTASDGTGIGLSIVQRIVADHSGTIHVGESPAGGAEFRLEFPR 787


>gi|223938073|ref|ZP_03629971.1| cyclic nucleotide-binding protein [bacterium Ellin514]
 gi|223893287|gb|EEF59750.1| cyclic nucleotide-binding protein [bacterium Ellin514]
          Length = 444

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 70/230 (30%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSS 57
            + +   L    L         I HD+ +P+  I  S E+  +++   E   +   R+S 
Sbjct: 203 RQYVSEVLQRERLALVGRFARTIVHDLKNPLNIIGLSAEMAGMEKATPEGRHLAKQRISK 262

Query: 58  M--SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------SWT 105
                   +  +      +     L        V      +   +++             
Sbjct: 263 QVERISELVNEILEFTQGSHVSFVLAQTPYDVFVQILLEEIRPEIEIKSVTIELENAPPA 322

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +   +   ++  NL   A  ++P GG++T+  + S+ E I  ++  G      E   
Sbjct: 323 IRLLLNPKRLRRVFYNLIHNATDAMPDGGRITLRFRVSEEEVITEIEDTGPGI-ATEIAD 381

Query: 166 QIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D            +       +  +++ R+          V S  L 
Sbjct: 382 RLFDAFATFGKAHGTGLGLSISKKIVEDHRGRISARNEPGRGAVFSFALP 431


>gi|254509234|ref|ZP_05121329.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
 gi|219547825|gb|EED24855.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
          Length = 573

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 61/234 (26%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           K+        +   +   + + H++ +P+ A+   +++L      D  ++++     SA 
Sbjct: 198 KSAQVRAEQANQAKSRFLAMMSHELRTPLSAVLGYVDVLLADSKCDHQIEILEKMESSAE 257

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +                    ++  +    +    +            + ++  + +   
Sbjct: 258 LLLVLINDILELSRIESGEFRIKCQWVNLKNELEFMLEHFYALSDAKGLKLNVNLDIDAH 317

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +I+ NL   A       G V++  + +  E I  ++  G         T
Sbjct: 318 HSVWVDPARILQIVFNLLGNAIKFT-HAGHVSLHAEVTSQELIIEVEDTGIGIDPSRIET 376

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     ++        +       L       +  E            L 
Sbjct: 377 VFNQFKQADDSITRRYGGSGLGLTISKHLVTLMNGSIRVESEKGKGSRFKIKLP 430


>gi|115377775|ref|ZP_01464965.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|310817766|ref|YP_003950124.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365212|gb|EAU64257.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|309390838|gb|ADO68297.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 781

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM-----------QLIRLSSMSAII 62
           + + + H+I +P+  + ++L    +LL    +  E +           + I         
Sbjct: 421 MAAGVAHEINNPLAYVCSNLAFLGDLLARGPVPAESLPELREVVAETEEGIGRVRAIVQD 480

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGEKIDLSRERAKILL 120
              F R      G VD    L    +++ +           +              ++++
Sbjct: 481 LKAFARSDEERFGPVDVHQVLEGALRLVRNELAYRARLVRALEGVPTVRGNEGRLGQVMV 540

Query: 121 NLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           NL + A  +     +        +  D  +  +  ++ NG      E   +I D    + 
Sbjct: 541 NLLVNAVQAFSKNDMDENRIRLATRCDGPDWVVVEVEDNGPGM-AQEVLERIFDPFFTTK 599

Query: 176 IDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       + H    ++       H  V   +L 
Sbjct: 600 PVGVGTGLGLAICHSIVHSMGGQIEVRSRLGHGSVFRVVLP 640


>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
 gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
            Koribacter versatilis Ellin345]
          Length = 1131

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 20/232 (8%)

Query: 2    AKN-ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
             KN     L S  L ++  + + I H+I +P+ AI N+L L     D      E +++  
Sbjct: 896  RKNAEDALLRSEKLASVGRMAATIAHEINNPLEAITNTLFLALHAQDLPESAREYLEMAD 955

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------EQVIEDFIAVDKRVQVSWTGEK 108
                      +     +  + +   +     +       +       V    Q       
Sbjct: 956  GELRRVAHITRQALGFYRESNAPRQIALNAVMDSTLDLLKNRIRTKNVTVEKQWDGDVHA 1015

Query: 109  IDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              ++ E  ++  NL   +  ++  G   KV IS   + +    ++  +G       +  +
Sbjct: 1016 EAVAGEMRQVFSNLLQNSLDAVDEGGAIKVRISTIRNGSAVRVTIADSGKGIEANFR-ER 1074

Query: 167  IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPE---IIDDHNVVLSALLE 214
            I +    +       +  +    +  ++  R+        D      S +L 
Sbjct: 1075 IFEPFFTTKGAVGTGLGLWVTRQIVEKHGGRIRVHSLTSGDQRGTSFSIVLP 1126



 Score =  106 bits (263), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 69/237 (29%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
            +     L+ +D       S + H+  +P+  +   LE L    E  I  E   L+ ++ 
Sbjct: 354 ERRRAEALAELDRAKTTFYSNVSHEFRTPLTLMLGPLEELLGKSERAIRPENHHLVEVAY 413

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------------- 103
            +    LK +     ++      + +      +  F A    +  S              
Sbjct: 414 RNGTRLLKLVNTLLDFSRIEAGRMNVSFQATDLVAFTAELTALFRSATDKAGLRLEIESD 473

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         KI+LNL   A       G +TI+++D  +    S++  G      E
Sbjct: 474 ALPHRVYVNREMWEKIVLNLLSNAFKFT-FEGGITIALRDGGDGVAVSVRDTGVGIPPNE 532

Query: 163 ---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +     G    + +   I    V  L   +   +  E            L 
Sbjct: 533 LPRVFERFHRVEGAKGRSFEGSGIGLSLVQELVKTHGGTIEVESEVGKGTTFHIHLP 589


>gi|28209857|ref|NP_780801.1| sensor histidine kinase [Clostridium tetani E88]
 gi|28202292|gb|AAO34738.1| sensor histidine kinase [Clostridium tetani E88]
          Length = 738

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +     + S  L A+  + + I HD+ + +  I  S++LL E  ++D+ +          
Sbjct: 367 QEQNKFIESEKLRAMGEMAAGIAHDVNNVLTPIVGSIQLLKESNMKDKHLIKQLDVIEMC 426

Query: 61  -----------------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-- 101
                                  +          D++    +          ++  V   
Sbjct: 427 AYDGMNITNKIKRFTKQYNLNYGLETFNIDNIIKDAINLTKNKWLTESALNGININVMSK 486

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++   +      E  ++ +N+   A  ++P  G + I+ +   N  +   + NG      
Sbjct: 487 LNSNAKVKGNETEIREVFINIIKNAIDAIPEEGYIEITSEVKNNNVVIEFRDNGIGMNRE 546

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +       +  ++   +  +  +    V    L 
Sbjct: 547 VVKRAFEPFFSTKGKKGSGLGLSVSYKIIQDHGGTMKIDSKESFGTVFYIELP 599


>gi|331269704|ref|YP_004396196.1| putative phosphate regulon sensor protein [Clostridium botulinum
           BKT015925]
 gi|329126254|gb|AEB76199.1| putative phosphate regulon sensor protein [Clostridium botulinum
           BKT015925]
          Length = 455

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/232 (8%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMS 59
           ++   L + +++ +   + + H++ +P+ +I    E L   +     D  + +I      
Sbjct: 223 DMADKLQNTLNIKSQFVANVSHELKTPLTSIKGFAETLRYVENNSTRDRFLGIIDDEVER 282

Query: 60  AIIRLKFMRLAFGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
               +  + +      +                 + ++ +   +   +   + V  +   
Sbjct: 283 LTRLINDILILSDIECNKYLKKSEDIDVVACIKDIYNLMKNYSEKKNIHVNMVVYESPII 342

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  ++++N+   A      G +V I V+  +N+ +  ++  G      E   ++ 
Sbjct: 343 CGDKDKFKEMIINIVDNAIKYSENGDQVFIGVKTEENQCVIWVEDTGVGI-EKEHIPRLF 401

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                 +    V  +      ++      +     +  + 
Sbjct: 402 ERFYRVDKARSRNNGGTGLGLAIVKHIVLNFNGKIYVRSKFNQGTKFTIKIP 453


>gi|320322225|gb|EFW78321.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 436

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDLSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426


>gi|229155124|ref|ZP_04283237.1| hypothetical protein bcere0010_13180 [Bacillus cereus ATCC 4342]
 gi|228628409|gb|EEK85123.1| hypothetical protein bcere0010_13180 [Bacillus cereus ATCC 4342]
          Length = 423

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGIPAA-IQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|238797762|ref|ZP_04641256.1| hypothetical protein ymoll0001_12720 [Yersinia mollaretii ATCC
           43969]
 gi|238718403|gb|EEQ10225.1| hypothetical protein ymoll0001_12720 [Yersinia mollaretii ATCC
           43969]
          Length = 908

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 650 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 709

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 710 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSHHQIRVELP 769

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I            +  NG      +
Sbjct: 770 DEMVLINCDGSLLERVFINLLENAHKYAGHEALLGIRATVQGEWLNVEVWDNGPGVTLGQ 829

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   D        L 
Sbjct: 830 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQDGGARFHFTLP 884


>gi|254229817|ref|ZP_04923223.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25]
 gi|262395617|ref|YP_003287470.1| sensor protein TorS [Vibrio sp. Ex25]
 gi|151937653|gb|EDN56505.1| tmao reductase sytem sensor tors [Vibrio sp. Ex25]
 gi|262339211|gb|ACY53005.1| sensor protein TorS [Vibrio sp. Ex25]
          Length = 987

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPIQKRYAEIINRSGK 516

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +                     D    + D  Q++              ++   +
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKRLLFSYHIESDVS 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A      G          + +++ +F +   G      ++
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDQ 636

Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T            S      +       +       L  +  + H       + 
Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGILEVDSEEGHGSRFWFSIP 691


>gi|116626468|ref|YP_828624.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116229630|gb|ABJ88339.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 611

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLS 56
            + I   L  +  L A+  + S + H++ +P+ AI   +E+          +V   + + 
Sbjct: 381 QRKINRELQTADRLSAISRISSGVAHEVKNPLNAILLHVEVARGKLSHGNTDVAPQMEII 440

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEK 108
           +   +   + +R    +T  V+  +    + ++             A    V V    E 
Sbjct: 441 AREILRLDRVVRTFLDFTRPVELKLATVSMRELVQEIVELARPQAAAAGIGVTVRDEAEG 500

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +D+  +     + +LN+ +    ++P GG++       +N     +   G          
Sbjct: 501 VDVRVDRDLFKQAVLNIVVNGMQAMPEGGELRFEATAGENGTELRISDTGTGI-PEALRE 559

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I      +  +   I       +   +   +               L 
Sbjct: 560 KIFRLYFSTKKEGSGIGLAMTFRIVQLHDGTIDFTSEPGKGTTFLIRLP 608


>gi|320353837|ref|YP_004195176.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122339|gb|ADW17885.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 947

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 60/245 (24%), Gaps = 33/245 (13%)

Query: 2   AKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K        +  M+ + LL   + HD  + +  I     +  +            +  +
Sbjct: 560 RKESELKLRQMQKMEAIGLLAGGVAHDFNNILSVILGYATMALDELGSSSSRVKRDVLQI 619

Query: 59  SAIIR------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                   F        +  +  + +                  
Sbjct: 620 QKAGLRARDLVKQILSFCHQSEEHFQPLKPHLIVKEVVKMLRSSFPSTIAITSRIAVLDA 679

Query: 107 EKIDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSL 151
             +    +  ++L+NL   A  ++                +  +  +    S      S+
Sbjct: 680 LVLADPSQIHQVLMNLCTNALHAMKGSGELLIELEQTDLHQKRRRELQDLPSGPYLRLSV 739

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           K +G     PE   +I D    +  +     +    V+ +   +K  +  +   +     
Sbjct: 740 KDSGTGI-PPEIVDKIFDPFFTTKKEGEGTGLGLAVVLGIVKAHKGAVTVDSKPEQGTTF 798

Query: 210 SALLE 214
           S  L 
Sbjct: 799 SVYLP 803


>gi|300694191|ref|YP_003750164.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
 gi|299076228|emb|CBJ35542.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum PSI07]
          Length = 675

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 63/234 (26%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL     ++   +    +   + 
Sbjct: 287 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEATFRRGLEAIERSA 344

Query: 62  IRLKFMRLAFGYT---------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                +                         D L    +  + +     +   ++     
Sbjct: 345 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQIAVDMECQPVP 404

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG + +SV  S    + +++  G        P  
Sbjct: 405 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVSVHASAEGLVATVRDTGIGIEPTFLPHI 464

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           F +    +           +       L   +  R+       D    ++  L 
Sbjct: 465 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGTDLGTTMAVTLP 518


>gi|271970058|ref|YP_003344254.1| heavy metal sensor signal transduction histidine kinase
           [Streptosporangium roseum DSM 43021]
 gi|270513233|gb|ACZ91511.1| heavy metal sensor signal transduction histidine kinase
           [Streptosporangium roseum DSM 43021]
          Length = 460

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/231 (8%), Positives = 61/231 (26%), Gaps = 19/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSA 60
           ++      S + +    +   H++ +P+ +I    E   +    D   +M+ +   ++  
Sbjct: 224 ESEASARRSEERMRRFVADASHELRTPLTSIRGFAEFYRQAPDIDAAPLMRRVESEAVRM 283

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDL 111
            + +  + +           +   D+  +  D +   + +  +                 
Sbjct: 284 GLLVDDLLMLARMDQQRPVAMRPVDLLAIAADTVHDARILAPAREITLSVDGAALIVSGD 343

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168
                +++ NL   A    P    V +++       +  +   G      +    F +  
Sbjct: 344 EVRLRQVVGNLMTNALTHTPDRTPVRMTLSARDGMAVIEVADEGPGLDAEQCERVFERFY 403

Query: 169 DGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +              +    V  +   +   +  E            L 
Sbjct: 404 RVDSARGRRAPEDGGSGLGLAIVAAIVDTHGGTVDVESAPGEGSTFRVALP 454


>gi|258404542|ref|YP_003197284.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
 gi|257796769|gb|ACV67706.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
          Length = 671

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/243 (8%), Positives = 62/243 (25%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           M +     + +  + +L  + + I H++  P+ AI    + L                 V
Sbjct: 416 MIEKDAQLIQAAKMKSLGEMSAGIAHELNQPLNAIKMGSDFLALTVERGTELPPERWQGV 475

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--- 106
           +  I      A   +  +R           ++ + +  + +   +    ++         
Sbjct: 476 VHEISAQVDRAAGIIATLRAFGRKETLSKDVLDINEPIKAVLSILRQQFQLHNVDFHLAL 535

Query: 107 -----EKIDLSRERAKILLNLFMVAHASLPRGGK--------VTISVQDSKNENIFSLKI 153
                  +       ++  NLF  A  ++    +        + +    +      ++  
Sbjct: 536 GQNLPPVLAQDTRLQQVFFNLFTNAKEAIEELRRSSPQAEGTIHVRTWAADGRVCAAVCD 595

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G           + +  V S        +       L  + +  +  +         + 
Sbjct: 596 TGPGIPDS-LRQTLFEPFVSSKSSGQGMGLGLAITQSLVRDYQGTITIDSTPGEGACFTV 654

Query: 212 LLE 214
              
Sbjct: 655 SFP 657


>gi|225165893|ref|ZP_03727663.1| PAS/PAC sensor hybrid histidine kinase [Opitutaceae bacterium TAV2]
 gi|224799865|gb|EEG18324.1| PAS/PAC sensor hybrid histidine kinase [Opitutaceae bacterium TAV2]
          Length = 422

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59
           +        M+ +  L   I HD+ + +  +  S++LL    +    + ++Q +  S+  
Sbjct: 45  QTRHLRARHMENLGELTIGIAHDLNNALAPVLMSIDLLRLRVDNASCERLLQAVETSARR 104

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               +K        +  A     +   +  +  +                      +   
Sbjct: 105 GADLVKQVLVYARGLEGAPVPLHAAQLIKDVALVASETFPAGIATTASIDPQLWPVMADP 164

Query: 113 RERAKILLNLFMVAHASLPRGGKVTIS----------------VQDSKNENIFSLKINGN 156
            +  ++LLNL + A  ++P GG +T +                          +++  G 
Sbjct: 165 TQLHQVLLNLAINARDAMPAGGSLTFTARNLPPLPAADAAGASGMPCGPVIEITVRDTGT 224

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQ--FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   ++ D    +      +         + + +   +  E         +  L 
Sbjct: 225 GI-APEVRERLFDPFFTTKPGGRGLGMGLATARTIVNAHGGVITFESEPGQGATFTIRLP 283


>gi|119485203|ref|ZP_01619588.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
 gi|119457431|gb|EAW38556.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Lyngbya
           sp. PCC 8106]
          Length = 364

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 54/216 (25%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIRLKFMR------- 68
           L S + H++ +P+  +   LE + E  I+       R    +      +  ++       
Sbjct: 148 LISDMTHELRTPLTVVRGYLEEMAEGQIQPSDELYNRLIRETRRLERLVNDLQELSKAEA 207

Query: 69  -LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAKILLNLF 123
                    ++    L  +     D +     V                    +IL+NL 
Sbjct: 208 GYLVINPKPLNLRPLLESLVTRFGDQLLEYGPVIRLDCPSSLPTVFADIDRTEQILVNLL 267

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDG--NVESTIDS 178
             A      G       Q+  +    ++   G        P  F +   G  +       
Sbjct: 268 GNAIRYTENGSITVKVWQNLNS-VWVAVIDTGIGISEIDLPHVFERFWRGERSRSRQWGG 326

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I       L      ++  E       +    L 
Sbjct: 327 TGIGLAITKRLVELQGGKIEVESELGKGSIFRFCLP 362


>gi|167644588|ref|YP_001682251.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347018|gb|ABZ69753.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 645

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 64/239 (26%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           A ++   L + +  +L      + + H+I +P+  I    ++L    +   V +L+ +  
Sbjct: 247 ATSLRLALEAAEQASLAKSTFLANMSHEIRTPLNGIVAGADILARSELTPRVRELVDIIQ 306

Query: 58  MSAIIRLKFM----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
            S     + +                     + G +   +         E  +A++ R+ 
Sbjct: 307 TSGKSLERLLSEVLDLVRIEAGQVTIETGVFHLGDLTRSVAALCALHAGEKGVALETRIA 366

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +     I       ++L NL   A     +G         +  +   S++  G      
Sbjct: 367 PAADIAVIGDGARVRQVLTNLVSNAVKFTDQGQVAVEVDLGADGQTRISVRDTGVGFDPA 426

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I                   +       L       L  +            L 
Sbjct: 427 E-KARIFGRFQQADASFTRRFGGTGLGLTISRELVELMGGTLSCDSRPGAGSTFWFDLP 484


>gi|150017332|ref|YP_001309586.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903797|gb|ABR34630.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 344

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRL 55
           M++N    +  ++      +   + + H+  +P+ +I     LL +  +  E   +    
Sbjct: 109 MSQNFNIMVDELNNIETFRSDFIANVSHEFKTPLASIEGYTTLLQDNNLSKEEKSKYTDK 168

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDS------------LIGLGDIEQVIEDFIAVDKRVQVS 103
              +       +      +   +                   +  +   +   +  + + 
Sbjct: 169 ILNNTKRLSSLVGSILQISRLENQDIIAERSRFKLDEQLRQTLLLLESKWSNKNIDLDID 228

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                   + E   ++ +N+   A    P  G +  +++  KN    S+  NG       
Sbjct: 229 LDSITFHGNEELLMQVWINILSNAIKFTPEDGTIRCTLKKDKNWITTSISDNGIGMNEDT 288

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   G+   + + + +    V  +      ++               L 
Sbjct: 289 QKHIFDKFYQGDKSHSSEGNGLGLALVKRIIDLCGGKIEVYSECKKGSTFVIKLP 343


>gi|332523080|ref|ZP_08399332.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314344|gb|EGJ27329.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 352

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 20/235 (8%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQL 52
           +++N+      +  +A L     S + H++ +P+ ++    +LL +       + E++ L
Sbjct: 115 LSQNVNQMAQDLKNLAQLRQDFISNVSHELKTPVASLVGLSDLLADSDLNREDQAELLAL 174

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTG 106
           ++  ++        +                           ++      DK +Q+ +  
Sbjct: 175 MQSETLRLSRLCDDILNLSRLDRQDQLRIEKVRVDEQIRHSLILLKEKWKDKEIQIDFQA 234

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
             +    +     +I LNL   A         +TI ++        + +  G        
Sbjct: 235 LPLVWGTDPDLSMQIWLNLLDNAIKYSGIQVNLTIIMKADHKGLSLTFQDKGIGIAPDKL 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F Q    +   + + + +    V  +    K +L     +     +   L K
Sbjct: 295 RYIFDQFYQVDQSHSQEGNGLGLAIVKRIVTLLKGQLEVFSQEGEGTQVILFLPK 349


>gi|330943279|gb|EGH45669.1| sensor histidine kinase [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 436

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNDDEDSIRLCLEPIPPSPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNAKHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEARVRLP 426


>gi|329765115|ref|ZP_08256698.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138392|gb|EGG42645.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 263

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 81/227 (35%), Gaps = 16/227 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
           + +     + S  L A+  L SR+ HD+ +P+  I  ++ +L             + ++L
Sbjct: 38  LKEKTKKLIESERLSAIGELSSRVSHDLKNPLTVIKGTVGILKLRKGMPIDDFVMKRLEL 97

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +  S      ++  +     +T        L  I +       + + ++V      I  +
Sbjct: 98  MEASIFRMTHQIDVVLDYVQHTPLDKKDESLKQIIENSLQLQKIPENIRVVLPKNDITYN 157

Query: 113 RERAKILLNLFM---VAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +R K+ + +      +  ++    G++ I + ++       ++ +G+     E   +I 
Sbjct: 158 CDRVKMEVVIGNLLLNSIQAIGLEKGQIVIEILETPIAITIIIQDSGSGV-PNEHIQKIF 216

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +  +   +    V  +  ++   +  +        ++  L K
Sbjct: 217 EPLFTTKQEGTGLGLSSVQSIIEQHGGIIDLKNNP---TTVTITLPK 260


>gi|254881618|ref|ZP_05254328.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254834411|gb|EET14720.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 616

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 70/220 (31%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI     ++ E    +E +Q   +   + +   +    
Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETENAEERLQYYDIVEKNNMRLQELINE 310

Query: 66  -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                     +       V   I   D++            +    +   + +S +R ++
Sbjct: 311 ILDLSKIESGMMEFNYAPVSLYILCEDVKNTYSFRCQPGVELVFEESDPSLVISTDRNRL 370

Query: 119 LLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNVEST- 175
                 +   +     K +IS      + E +F +   G+     +K  +I D  + +  
Sbjct: 371 FQVFSNLIGNATKFTAKGSISFGYKLKEKEIVFHVADTGSGI-SDDKIDKIFDRFIMANN 429

Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +   ++  +   +     +  L 
Sbjct: 430 QVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|229521779|ref|ZP_04411197.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae TM
           11079-80]
 gi|229341373|gb|EEO06377.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae TM
           11079-80]
          Length = 438

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIINDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124
           +++           L  +       E    V     +               + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQAELAPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|46201697|ref|ZP_00208212.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 458

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 18/203 (8%), Positives = 56/203 (27%), Gaps = 7/203 (3%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             +   H++ +P+  +   +E L +    D +++ +   +      L   R         
Sbjct: 250 FTADAAHELRTPLAVLRAHVETLPDPATRDALVRDLESMTRLIAQLLTVARAEALTVAMD 309

Query: 78  DSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
           +        +     +    +   + ++V  +     ++     +   L  +   +L   
Sbjct: 310 EQADLNAIAVDVGTFLAPMALKQHRMIEVIESPSPCLITANAEAVFNALRNLVENALTHT 369

Query: 134 GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQFYYVILLAH 191
              +      +N  I  ++  G      +   +I               +    V  +  
Sbjct: 370 PADSTVSVRVENPAILRVEDRGPGI-PAQLRDRIFQRFWRAERRKSGSGLGLAIVREIMM 428

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +  R+  E       + S +  
Sbjct: 429 AHSGRVEVEDRPGGGAIFSLIFP 451


>gi|269959398|ref|ZP_06173781.1| Osmolarity sensor protein envZ [Vibrio harveyi 1DA3]
 gi|269835835|gb|EEZ89911.1| Osmolarity sensor protein envZ [Vibrio harveyi 1DA3]
          Length = 430

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 66/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLFMVAHA 128
               +     +  +       E    V+    ++ T            + + NL + A  
Sbjct: 280 VNKESFERVDINTITSDVATSEGGYEVEIETDLNPTMPTAKGSPIAIKRAVSNLVVNALR 339

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 K++  V   K      ++ NG      +    F     G+     +   +    
Sbjct: 340 YGNGWVKISTGVTADKQLVWVCVEDNGPGIEQSQIAKLFEPFTRGDTARGSEGTGLGLAI 399

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++     +  +       
Sbjct: 400 VKRIVSQHSGSVVVRNRSEGGLSAQISFP 428


>gi|227431099|ref|ZP_03913157.1| signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227353139|gb|EEJ43307.1| signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 366

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 71/241 (29%), Gaps = 29/241 (12%)

Query: 1   MAKNICFNLSSMDLVALLC------SRICHDIISPIGAIHNSLELL-----DEVGIEDEV 49
           + + +   +    L AL+       S + H++ +P+  +   +ELL     D+  + ++ 
Sbjct: 118 LTRILNRTID--RLQALISAQQQFVSDVSHELRTPVTIVKGHMELLNRWGKDDPEVLEDS 175

Query: 50  MQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106
           ++              + + L       VD++  + D+   +       K +   ++   
Sbjct: 176 IKSSLAEVQRMETLINEMLNLTRAEQIPVDNVKEITDVGGTMHRIYDNFKMIHPDFSFTL 235

Query: 107 --------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                             +IL+ L   A        ++  ++  + N     ++  G   
Sbjct: 236 DDDLSTKARVKIRQDHMEQILIILADNAVKYSLDRHEIHFALSQTANRVEIGVQDFGEGL 295

Query: 159 RFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +  +    F +    +           +       L       +  E  +    + +  L
Sbjct: 296 KPEDAKCVFDRFYRVDKARSRAKGGTGLGLSIAQRLVEAYGGAIALESAEGSGSIFTIYL 355

Query: 214 E 214
            
Sbjct: 356 P 356


>gi|298528098|ref|ZP_07015502.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511750|gb|EFI35652.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 741

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 59/222 (26%), Gaps = 20/222 (9%)

Query: 12  MDLVA--LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLK 65
             L A   +  RI H+I +P+  I  S + L++       +    Q  +L         +
Sbjct: 511 QRLAAWREVARRIAHEIKNPLTPIKLSAQRLEKKFSSSVRDPSFEQSTQLIIRQVENLQQ 570

Query: 66  FMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
            +R    +    +          L      + +        +++        S +R  + 
Sbjct: 571 MVREFSTFAKLPEVRPRTDSLDSLVQEVVSMFEQSHRQIGWELTIASNIPQFSFDRDAMK 630

Query: 120 LNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFPEKFTQIVDGNV 172
             L  +   +     K                N     +  NG      E+  ++ +   
Sbjct: 631 RVLLNIFLNAAEAIDKTGDGKVSIDLDYDAQLNRVFVQVADNGPGLSSEER-ARLFEPYY 689

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S  +   +       +  ++   +  +       V    L 
Sbjct: 690 SSKKEGTGLGLAIAKSIVSDHGGYVRVKSNQPRGTVFVVELP 731


>gi|225575706|ref|ZP_03784316.1| hypothetical protein RUMHYD_03799 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037086|gb|EEG47332.1| hypothetical protein RUMHYD_03799 [Blautia hydrogenotrophica DSM
           10507]
          Length = 382

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 74/243 (30%), Gaps = 28/243 (11%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRL 55
           M K +  +             L S I HD+ +P+ AI   +E + +      E M+    
Sbjct: 133 MRKRLKESAEERVVLDKENKELISNISHDLKTPMTAIKGYVEGIMDGIADTPEKMERYIR 192

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------- 99
           +  +    +  +     +   +D+        ++  +    D                  
Sbjct: 193 TIYNKTNEMDHLINELTFYSKIDTNRIPYTFSKLNVEDYFNDCAEELSVEMETRNIELVY 252

Query: 100 -VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNL 157
              V    + I    +  +++ N+   +   + +    + I V+D  +     ++ NG  
Sbjct: 253 ANYVDNKVQIIADGEQIRRVIHNIISNSIKYMDKKKGIIQIRVKDVGDFIQIEIEDNGKG 312

Query: 158 ARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +V          I    V  +  ++  ++     +    ++  +
Sbjct: 313 IAAKDLTNIFDRFYRTDVSRNSSKGGSGIGLSIVKKIMEDHGGKVWATSREGIGTIMYFV 372

Query: 213 LEK 215
           L K
Sbjct: 373 LRK 375


>gi|196045140|ref|ZP_03112373.1| sensory box histidine kinase [Bacillus cereus 03BB108]
 gi|229184110|ref|ZP_04311321.1| hypothetical protein bcere0004_16760 [Bacillus cereus BGSC 6E1]
 gi|196024142|gb|EDX62816.1| sensory box histidine kinase [Bacillus cereus 03BB108]
 gi|228599399|gb|EEK57008.1| hypothetical protein bcere0004_16760 [Bacillus cereus BGSC 6E1]
          Length = 288

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 71/240 (29%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL      +    E  V 
Sbjct: 46  MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGSQFHTNREECEQYVS 105

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++ ++E  +           +   +
Sbjct: 106 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCI 165

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I +          +K  G     
Sbjct: 166 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKQILIQISKRDLNVEIEIKNFGQCIPN 225

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              P  F +   G            +       +A  +K  +     +    V +  L +
Sbjct: 226 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIALPR 284


>gi|119358118|ref|YP_912762.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
 gi|119355467|gb|ABL66338.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeobacteroides
           DSM 266]
          Length = 1053

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 57/237 (24%), Gaps = 28/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57
           AK        +    L  + I H+I +P+  I    ELL E       + E + LI  S 
Sbjct: 673 AKEKAEESDRLKTAFL--ANISHEIRTPMNGILGFSELLKEPHLSGEEQTEYINLINQSG 730

Query: 58  MSAIIRLKFMRLAFGY--------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
              +  +  +                       +  +      E   +  +         
Sbjct: 731 QRMLHLINELVDISRIESGDTFLQITETSINRLMHDIYAFFRPEAAKKGLLFECIVGLSD 790

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S +  +IL NL   A      G         +     F +  +G      E 
Sbjct: 791 LFSVIDTDSSKVNQILTNLVQNALKFTTEGSVDFRYTLKND-CLEFYVTDSGACI-PSEM 848

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D             +   +              ++  E I+         L 
Sbjct: 849 KEKIFDRFRQVDNSLTRRYEGAGLGLSISKAYIEMLGGKIWVESIEGRGNRFVFTLP 905


>gi|152985475|ref|YP_001347049.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
 gi|150960633|gb|ABR82658.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PA7]
          Length = 918

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAACVETIASSGN 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
             +  +     Y               D    L D   +        +            
Sbjct: 455 ALMSVINDILDYARIESGKLQLERIDFDLEELLSDTLALFGAQAREKRLRLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L NL   A      G       +          ++S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLTNLLGNALKFTAEGHVALRVQRRFDEAGRERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQATLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTRFSVDLP 632


>gi|121726709|ref|ZP_01679934.1| osmolarity sensor protein EnvZ [Vibrio cholerae V52]
 gi|147673138|ref|YP_001218201.1| osmolarity sensor protein [Vibrio cholerae O395]
 gi|153212525|ref|ZP_01948272.1| osmolarity sensor protein EnvZ [Vibrio cholerae 1587]
 gi|153802197|ref|ZP_01956783.1| osmolarity sensor protein EnvZ [Vibrio cholerae MZO-3]
 gi|262170045|ref|ZP_06037734.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae RC27]
 gi|4433394|gb|AAD20724.1| sensor outer membrane protein EnvZ [Vibrio cholerae]
 gi|121630870|gb|EAX63252.1| osmolarity sensor protein EnvZ [Vibrio cholerae V52]
 gi|124116396|gb|EAY35216.1| osmolarity sensor protein EnvZ [Vibrio cholerae 1587]
 gi|124122271|gb|EAY41014.1| osmolarity sensor protein EnvZ [Vibrio cholerae MZO-3]
 gi|146315021|gb|ABQ19560.1| osmolarity sensor protein EnvZ [Vibrio cholerae O395]
 gi|227014599|gb|ACP10809.1| osmolarity sensor protein EnvZ [Vibrio cholerae O395]
 gi|262021453|gb|EEY40165.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae RC27]
          Length = 438

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124
           +++           L  +       E    V     +               + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQAELAPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRTQGGLRAQISFP 432


>gi|298293988|ref|YP_003695927.1| histidine kinase [Starkeya novella DSM 506]
 gi|296930499|gb|ADH91308.1| histidine kinase [Starkeya novella DSM 506]
          Length = 432

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 63/224 (28%), Gaps = 22/224 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     +   H++ +P+ ++   +E L      +    +  ++++   +      +  
Sbjct: 198 EQMRVDFIANASHELRTPLASLSGFIETLQGPARNDANARERFLKIMGEQARRMSRLIDD 257

Query: 67  M-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----- 116
           +          +      +  +  I  V +    + +   V    E              
Sbjct: 258 LLSLSRIELNAHLRPEAEIDLVSVISHVRDALGPLGRERGVEIAFEHPQPPVNVRGDRDE 317

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN 171
             ++  NL   A      GG+V I++     + + S++  G             +    +
Sbjct: 318 LIRVFENLVENALKYGGAGGRVEIAIAREGGDAVVSVRDYGPGIAPEHVPRLTERFYRVD 377

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      +    V  +   ++ +L  E +       S  L
Sbjct: 378 TAHSREQGGTGLGLAIVKHIVARHRGKLGIESVPGEGSTFSVRL 421


>gi|294054668|ref|YP_003548326.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614001|gb|ADE54156.1| multi-sensor hybrid histidine kinase [Coraliomargarita akajimensis
           DSM 45221]
          Length = 1009

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            + +       D  ++      + + H+I +P+ AI    +LL +  +++   +   +  
Sbjct: 607 QEALQIARDRADAASVAKGEFLAMMSHEIRTPMNAIIGYTDLLRQTNLDELQAEQASIIK 666

Query: 58  MSAIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAV-----DKRVQ 101
            S    L+ +     Y+             VD    + +  + I           D  + 
Sbjct: 667 RSGKALLELINNILDYSKIESRTLELETSNVDVEQVVCEALEYILPQSKEKALKIDFEIS 726

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK------NENIFSLKING 155
            +             +IL+N    A      G                 +   F +   G
Sbjct: 727 ETVNAAYWGDPHRLRQILMNFANNAVKFTDTGSIRIDVDLKHSESSPDTHALYFRVTDTG 786

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +KF ++                   +       L      R+            
Sbjct: 787 CGI-PEDKFDRLFKPFSQVDSSTTRQFGGTGLGLVISKRLIERMDGRVWVSSQVGEGTTF 845

Query: 210 SAL 212
             +
Sbjct: 846 HFV 848


>gi|291280336|ref|YP_003497171.1| hypothetical protein DEFDS_1964 [Deferribacter desulfuricans SSM1]
 gi|290755038|dbj|BAI81415.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 442

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 64/229 (27%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M +     + +   + L      I HD+ + +  I +  + L    + +++  ++     
Sbjct: 206 MKRLEKNLIQNEKNITLGRFVDNIAHDLKNMLTGIFSICDYLKSKTLSEDIKCMVEQIYK 265

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDL 111
              +  +F+          D +                          VQ          
Sbjct: 266 YTKVMDEFISTMRNVGNKKDIIDIDFCRYLSENKDFYRRIIGKNIKIDVQCDCHCCGFMS 325

Query: 112 SRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                +I LNL + A  ++        GG +TI +          +  NGN     +   
Sbjct: 326 KTHLDQIFLNLLVNARDAIMEKYEDGNGGLITIKINCISENIFIEVTDNGNGI-PDDIID 384

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I   +  +  +   +  + V  +  +    +  E   +        L 
Sbjct: 385 KIFSLSFTTKDEGTGVGLFIVKSIVEQYGGSIEVESGLNKGTTFKVKLP 433


>gi|228907188|ref|ZP_04071050.1| hypothetical protein bthur0013_13590 [Bacillus thuringiensis IBL
           200]
 gi|228852520|gb|EEM97312.1| hypothetical protein bthur0013_13590 [Bacillus thuringiensis IBL
           200]
          Length = 421

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKSLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLCDYIQQLLASEVFLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGVGIPLA-IQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSAPD-GTTFTISIP 409


>gi|253701431|ref|YP_003022620.1| histidine kinase [Geobacter sp. M21]
 gi|251776281|gb|ACT18862.1| histidine kinase [Geobacter sp. M21]
          Length = 602

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 69/230 (30%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSS 57
           +       L +  + A+  L   + H+I +P+ AI  +++++ +      V+ +   ++ 
Sbjct: 363 LEATFDELLVAKKVAAVGHLALGLAHEIRNPLSAIQMNMQMIRKKIEPTGVLCENFSIAD 422

Query: 58  MSAIIRLKFMRLAFGYTGSVDSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                  + ++    +                   L  +         V     +    E
Sbjct: 423 GEIKRLNRLLKDVLDFARPRPVRLQTADLTGIVRRLLQLVDQRLAQHGVTTVTDLESPLE 482

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKF 164
            +    +  ++LLNL + A  ++                + +    +  +G     P+K 
Sbjct: 483 LVCDPEQIHQVLLNLVLNAMEAMEGIEGDRTLKVAAYRRETQAYVLVSDSGRGI-APDKC 541

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Q+ D    + I    +    +  +   +   +            + +L 
Sbjct: 542 EQLFDPFYTTKISGGGLGLSILQTIVLSHGGSVSVTGGTGAGATFTVVLP 591


>gi|194337195|ref|YP_002018989.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309672|gb|ACF44372.1| PAS/PAC sensor hybrid histidine kinase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 1148

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 30/235 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLIRLSSMSAI 61
             M++V  L   I HD  + +  I    E+        L        + Q    S+    
Sbjct: 765 QKMEMVGRLAGGIAHDFNNMLTVILGHSEMAMETSDPTLKTYAQFVAIHQAATHSANLTR 824

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKI 118
             L F R        V+    + ++  ++   I  +  +      +   +  +     +I
Sbjct: 825 QLLAFARKQVVSPKIVELNTAITEMLPMLRRLIGENIMLTWIPECKNCYIKIDPSQIDQI 884

Query: 119 LLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           L+NL + A  ++                    +   +   S +    S+  +G      +
Sbjct: 885 LVNLCINARDAITGNGRITIDNRCVTLPEIPCETDKTACHSADYVSLSVHDDGCGIEPND 944

Query: 163 KFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               I +    +        +    V  +  +N   +           ++  L K
Sbjct: 945 L-QHIFEPFFTTKESGKGTGLGLSTVYGIVKQNNGNIECRSEQGKGTTITIQLPK 998


>gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506]
 gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506]
          Length = 409

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 39/237 (16%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H++ +P+ AI    E+L E   +     LI             + L      
Sbjct: 167 SQFLANMSHELRTPLNAIIGYSEMLQEEAEDLAQEDLIPDLKRIHGAGTHLLGLINDILD 226

Query: 76  S--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAK 117
                          V+  + + +I  ++   +  +  V V               +  +
Sbjct: 227 LSKIESGKVELYLETVNISLLIREIIIMVRPLVEKNANVLVVDCADNLGYMKTDLTKVRQ 286

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKN--------------ENIFSLKINGNLARFPEK 163
            L NL   A     +G       ++ +                 +F +   G     PE+
Sbjct: 287 SLFNLLSNACKFTKKGKITIKVEKEYRKSGTLNGEEHKSAILYILFKVTDTGVGI-SPER 345

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++                   +       L+      +  E         + LL 
Sbjct: 346 MEKLFQPFTQADASTTREYGGTGLGLAITKKLSRIMGGDIFVESEVGKGSTFTILLP 402


>gi|258623303|ref|ZP_05718309.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573]
 gi|258584435|gb|EEW09178.1| Autoinducer 2 sensor kinase/phosphatase luxQ [Vibrio mimicus VM573]
          Length = 573

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 65/246 (26%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + + +      + L   L            + + H++ +P+ A+   +++L       +V
Sbjct: 185 LQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRSDSTSYQV 244

Query: 50  MQLIRLSSM---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
             L ++ +                        +   +           +   +   +  +
Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLDQSLVYHRQIAQDKGV 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
             + +   +   E    S    +IL N+   A     + G+V I +   ++     ++  
Sbjct: 305 QFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTKQ-GRVDIQLNYIEDGIDIQVQDT 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  +   D   +
Sbjct: 364 GIGIEPKRI-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGTINVDSKIDIGTL 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTLRIP 428


>gi|241665866|ref|YP_002984225.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
 gi|240867893|gb|ACS65553.1| PAS/PAC sensor hybrid histidine kinase [Ralstonia pickettii 12D]
          Length = 631

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL+    ++ + +    +   + 
Sbjct: 241 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLNMRAYDEAMFKRGIEAIERSA 298

Query: 62  IRLKFMRLAFGYT---------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                +                         D L    +  + +     +    +     
Sbjct: 299 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKNITIETEFLPVP 358

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG + +SV  +    + +++  G        P  
Sbjct: 359 MLQGDAGRLKQVFWNLLANAVKFTPEGGHIRLSVHPAPEGVVATVRDTGIGIEPTFLPHI 418

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           F +    +           +       L   +  R+       D    ++  L 
Sbjct: 419 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADRGTTMAVSLP 472


>gi|228943431|ref|ZP_04105875.1| hypothetical protein bthur0008_60010 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976314|ref|ZP_04136785.1| hypothetical protein bthur0003_60070 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228783418|gb|EEM31526.1| hypothetical protein bthur0003_60070 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228816211|gb|EEM62392.1| hypothetical protein bthur0008_60010 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 429

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 15/237 (6%), Positives = 58/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +     +     + + H++ SP+ +I     +L +           + +
Sbjct: 187 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-------DFIAVDKRVQVSWT 105
           I   +         +            L  +                     + +     
Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRTIVALQPQWSARDIHFELD 306

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + + ++ +     ++  N+   +       G + +S++         +   G      +
Sbjct: 307 LQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDTTNVTILISDTGIGIHLDD 366

Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  D   +    V  +   ++  +  +            L 
Sbjct: 367 QKRIFERFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLP 423


>gi|229012627|ref|ZP_04169800.1| hypothetical protein bmyco0001_30700 [Bacillus mycoides DSM 2048]
 gi|228748650|gb|EEL98502.1| hypothetical protein bmyco0001_30700 [Bacillus mycoides DSM 2048]
          Length = 429

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 16/237 (6%), Positives = 59/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +     +     + + H++ SP+ +I     +L +           + +
Sbjct: 187 LARSFEEMMHDLQQLEQMRREFVTNVSHEVQSPLTSISGYALVLKQVDLSEYERSRYLDI 246

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWT 105
           I   +         +            L  +            V        + +     
Sbjct: 247 IIAEAKRMSKMSDNLLKLSFLESQSKQLRLVTLSLDEQIRRIIVALQPQWSARDIHFELD 306

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + + ++ +     ++  N+   +       G + +S++         +   G      +
Sbjct: 307 LQTVKVTADHDLLNQVWTNILRNSIKFSEDAGVINVSIKQDIKNVTILISDTGIGIHLDD 366

Query: 163 KFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  D   +    V  +   ++  +  +            L 
Sbjct: 367 QKRIFDRFFKADRSHSRKYDGSGMGLAIVKQIVSLHQGDIRVKSELGQGTTFIVTLP 423


>gi|117925117|ref|YP_865734.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608873|gb|ABK44328.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 780

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 59/236 (25%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +P+ +I    ELL E  +  E    +++   +  
Sbjct: 392 AKEQAEAANRTK--SEFLAMMSHEIRTPMNSILGMAELLSESPLTPEQQGYLKIQRRAGH 449

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWT 105
                                 Y    +    L  +  ++E+                  
Sbjct: 450 GLLELINDILDLSKLEAGRIELYIQPFNLPELLQSVVDLLENLARERGLALRLERMEEIP 509

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPE- 162
                      +I++NL   A      G       + S +    +F +  +G      + 
Sbjct: 510 TLCQGDRARLRQIMVNLVGNAIKFTHDGSVKISVEKSSDDATNLLFHVIDSGIGIAEKDQ 569

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       L      ++  +         +  L 
Sbjct: 570 SSVFQRFTQIDSSNSRFYGGSGLGLAITHHLVELMGGKIWLKSALGEGSCFTFTLP 625


>gi|323705242|ref|ZP_08116817.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535144|gb|EGB24920.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 453

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 65/219 (29%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK------ 65
           L A L   I H++ +P+  + + LE + +       E +  +    +     +       
Sbjct: 232 LRAQLTQNIAHELRTPLSTLKSHLEAIIDGVWEPSKERIVSLYEEVVRLSNLINDIELLN 291

Query: 66  -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 +++        + +  L    + I           +      +      +++L+
Sbjct: 292 KIEIDNLKINKVRFNLSELIKSLLINYESIFINKNQHLEKNIEDDIFVVADKDRISEVLI 351

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175
           NL + A+     GG + + + +     + ++  NG      +    + +      +    
Sbjct: 352 NLLVNANKYTGEGGNIKVKLYNEGQFAVITVSDNGIGIPKEDLPFIYERFYRSEKSRSRD 411

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +   +  E I +     +  L 
Sbjct: 412 YGGSGLGLSIAKAIIKAHNGTINVESILNQGTKFTVKLP 450


>gi|317051142|ref|YP_004112258.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
            indicum S5]
 gi|316946226|gb|ADU65702.1| ATP-binding region ATPase domain protein [Desulfurispirillum indicum
            S5]
          Length = 1150

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 64/247 (25%), Gaps = 35/247 (14%)

Query: 2    AKNICFNLSS---MDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
             +     L S    +L     +   + + H++ +P+ AI    E+L E    D   Q+ +
Sbjct: 901  KETEIMLLESRNRSELANRVKSQFMANMSHELRTPLNAIIGYSEMLQEEYRSDPQGQIYQ 960

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------------- 100
                      + +++        D       ++    D  +  ++V              
Sbjct: 961  DMERVQKAGRQLLQIINDILDMADLESQTAQLQAESFDICSEARQVAQSVQAAIHKNGNT 1020

Query: 101  ----QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKI 153
                     G      ++  ++L++L   A      G     V+   + S+   +  ++ 
Sbjct: 1021 LDVRCDENIGTMYSDRQKIRQVLIHLLNNAGRFTENGQVALTVSAEQRHSEPWVLLRVRD 1080

Query: 154  NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G          QI +                 +               +  +       
Sbjct: 1081 TGIGIDPS-IHEQIFEPFTLGDSSSTRLYGGSGLGLSISRRFCEMMGGAITLQSETGKGA 1139

Query: 208  VLSALLE 214
              +  L 
Sbjct: 1140 EFTVALP 1146


>gi|254491051|ref|ZP_05104232.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224463564|gb|EEF79832.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 721

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 65/235 (27%), Gaps = 25/235 (10%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEV--------------GIED 47
           +I   L +    A   +  R+ H+I +P+  I  S E L                  +  
Sbjct: 482 DITALLQAQRNAAWGEVARRLAHEIKNPLTPIQLSAERLQRKYSALVPADQTNTVNKLTG 541

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWTG 106
            ++Q +           ++ R       +      + ++  + +        +       
Sbjct: 542 TIVQQVEAMKEMVNEFSEYARSPALQMQTHSIGGLIRELLTLYQSNPNHQFALLNSRDDI 601

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLAR 159
                +    +++ NL   A  +     +              +++    +++ +G    
Sbjct: 602 LIRIDANRFRQVMHNLLKNAIEACEDAKQAVDIVISYHPIEIKNQHWLEITIRDHGPGI- 660

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 ++ +    +      +    V  +  E+   +  E + D    +   L 
Sbjct: 661 PEPIIDKLFEPYATTKFKGTGLGLAIVKKIIEEHGGDVWAENLGDEGTSIIIRLP 715


>gi|222100206|ref|YP_002534774.1| Sensor protein [Thermotoga neapolitana DSM 4359]
 gi|221572596|gb|ACM23408.1| Sensor protein [Thermotoga neapolitana DSM 4359]
          Length = 744

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 74/227 (32%), Gaps = 16/227 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           +        + ++  + +R+ H+I +PI  I   ++ + +   + E ++           
Sbjct: 512 EEERKKKERLSILGEMTARVAHEIRNPITIIGGFVKRMRKHIDDPETLKKYVDIITGELS 571

Query: 59  ----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
                    L++ +       S  +L  L     V+ +    +  +   +  +  D    
Sbjct: 572 RLEGIVREILEYSKEEQILEFSEFNLNELIKEVYVLFEEKLREMNIDFFFETDNEDLRVK 631

Query: 111 -LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++L+NL   A  +    GK+ I  +D  N    S+  +G      E   +I  
Sbjct: 632 ADRSRIKQVLINLVQNAIEATGENGKIKIKSEDVYNVARVSVWNSGPPI-PEELKEKIFS 690

Query: 170 GNVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215
               +      +       +   E+  ++  E  +   V+    + K
Sbjct: 691 PFFTTKTQGTGLGLPICRKIVEDEHGGKIWVENTEG-GVMFIFEIPK 736


>gi|167614786|ref|ZP_02383421.1| two-component system sensor protein [Burkholderia thailandensis
           Bt4]
 gi|257141372|ref|ZP_05589634.1| two-component system sensor protein [Burkholderia thailandensis
           E264]
          Length = 987

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           M K     L    + +           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 485 MRKESELKLKEARIASDQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSQLSNQQSER 544

Query: 53  IRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +++    +   L                        D    L +I               
Sbjct: 545 LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIQALLQEIVDAYAPLAESKGLQL 604

Query: 102 VSW-----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
           +S                  +IL NL   A     RG       Q       +     + 
Sbjct: 605 LSNLGEGVARYYSGDPARIRQILSNLIGNAIKFTERGHISVDVHQAKAAQGDSAIEIWVN 664

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       LA      +  + + D   
Sbjct: 665 DTGIGIRPDRIATLFDVYTQADTSIHRRFGGSGLGLPLCKRLATIMGGSIEVDSLPDFGT 724

Query: 208 VLSALLE 214
            ++ +L 
Sbjct: 725 TVTVVLP 731


>gi|154505635|ref|ZP_02042373.1| hypothetical protein RUMGNA_03174 [Ruminococcus gnavus ATCC 29149]
 gi|153794074|gb|EDN76494.1| hypothetical protein RUMGNA_03174 [Ruminococcus gnavus ATCC 29149]
          Length = 243

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 67/208 (32%), Gaps = 14/208 (6%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H+I +P+  + ++L+++++   E + +             ++ +     +  S + 
Sbjct: 36  STISHEIRNPLTLVSSALQVMEKQNPELKDIPHWSQVMGDVDFIIQLLEELSAFNSSNEL 95

Query: 80  LIGLGDIEQV-------------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
              +  IEQ+               +             GE      +  +++LNL   A
Sbjct: 96  YYSVFSIEQLLKNVAISFAISLDTNEADIEFSSSISDSLGEFTGDKIKLQELVLNLLKNA 155

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYV 186
             ++   G + ++   S +    +    G     PE+   I    V        +   + 
Sbjct: 156 EEAITEQGSIHLAASRSGDIITITCTDTGCGI-TPEQMECIFQPFVTYKPGGTGLGLAFS 214

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +A  ++  L        +   +  L 
Sbjct: 215 RKIAEAHEGTLTAVSTPQESTTFTVTLP 242


>gi|153828356|ref|ZP_01981023.1| osmolarity sensor protein EnvZ [Vibrio cholerae 623-39]
 gi|254225436|ref|ZP_04919047.1| osmolarity sensor protein EnvZ [Vibrio cholerae V51]
 gi|125622070|gb|EAZ50393.1| osmolarity sensor protein EnvZ [Vibrio cholerae V51]
 gi|148876186|gb|EDL74321.1| osmolarity sensor protein EnvZ [Vibrio cholerae 623-39]
          Length = 438

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +    +             + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAGLAPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|303240370|ref|ZP_07326888.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302592097|gb|EFL61827.1| PAS/PAC sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 850

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 61/239 (25%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K+     ++    +   + + H+I +P+  +   ++L     + +E    +  +    
Sbjct: 355 LNKSKEEAEAANKAKSQFLANMSHEIRTPLNGMVGMIDLTLMSDLNNEQRDNLETAKSCV 414

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +  +      +          +  E  + VD  +    
Sbjct: 415 DSLLKLINEILDFSKIEAGKLELVNSSFRLEDLLEQTVKPYKIKAKEHNVMVDYSISSDL 474

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFP 161
               I       ++L NL   A           KV I+  D+    +F +   G      
Sbjct: 475 PEYIIGDQLRIKQVLNNLLSNALKFTEAGSINLKVDINTIDNDEFILFEVSDTGVGI-AD 533

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++               +   +       L  +    +  +         S  ++
Sbjct: 534 EDMEKLFKSFSQVDNSYTRKYNGTGLGLAISKRLIEKMGGSIWIKSEKGIGSTFSFTIK 592


>gi|295398638|ref|ZP_06808663.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
 gi|294973126|gb|EFG48928.1| sensor histidine kinase VicK [Aerococcus viridans ATCC 11563]
          Length = 631

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 63/225 (28%), Gaps = 27/225 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S I H++ +P+ ++ +  E L      +  +  E + +I+  +   I  +  +    
Sbjct: 387 QFVSNISHELRTPLTSVRSYSEALVDGAIKDEKVAVEFLNVIQTETDRMIRMISDLLHLS 446

Query: 72  GYTGSVDS------------LIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLSRE 114
                                  L     +++      K   +                +
Sbjct: 447 RMDAKQQVINRELIIFKDLVNHILDRFNMMLQSEDYEGKNYIIKRELMEEEVWVEIDQDK 506

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171
             +++ N+   A    P GG + + +  + N+ + S++  G        P  F +    +
Sbjct: 507 LIQVIDNIMNNAIKYSPDGGTIYVRLMSTHNQLVLSIQDQGLGIPQESIPHLFDRFYRVD 566

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +           +  ++    I++        L 
Sbjct: 567 KARSRAQGGSGLGLSIAKEEIELHNGKIWVNSIENKGTTFFISLP 611


>gi|229025081|ref|ZP_04181508.1| hypothetical protein bcere0029_33850 [Bacillus cereus AH1272]
 gi|228736191|gb|EEL86759.1| hypothetical protein bcere0029_33850 [Bacillus cereus AH1272]
          Length = 516

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       + +    + ++   ++   +     + +       D+
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHTCNVQALIEEVVTFILPTAVMHSVHIIMDHFDYISDI 400

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQI 167
             +  ++   L  +   ++            +     +     +   G      E+  ++
Sbjct: 401 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGI-PEERMARL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 506


>gi|158522345|ref|YP_001530215.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158511171|gb|ABW68138.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 587

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 71/227 (31%), Gaps = 24/227 (10%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------------QLIR 54
           +  L ++  L + + H+I +P+  I+    L+ ++    +                + + 
Sbjct: 350 ANKLASIGRLAAGVAHEINNPLAVINEKAGLIKDIFQLTDRYAGDEKLLGLVDAINESVA 409

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSR 113
                    L F R        VD    + D+   + ++    +  + +    +      
Sbjct: 410 RCGRITKQLLSFARHMDFSVQPVDIRAVISDVVGFLGKEAEYRNIAITIDVPPDIPQFET 469

Query: 114 ER---AKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           +R    +ILLNL   A A+L  GG +TI+  + +       +   G      +   +I +
Sbjct: 470 DRGKLQQILLNLINNAFAALSEGGALTITANRVNGKTLRIRINDTGCGISDKDLK-RIFE 528

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +        +       L  E    +  E         +  L 
Sbjct: 529 PFFSTKTSTGGTGLGLSITYSLVQELGGVIDVESEVGVGTQFTITLP 575


>gi|94968618|ref|YP_590666.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94550668|gb|ABF40592.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 447

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 66/223 (29%), Gaps = 16/223 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +A+ +       +L +L  + + I H+  + +  I    ++L     ++ V +       
Sbjct: 217 LARQMRVR---ENLASLGEMSAGIAHEFKNSLATISGYAQMLK-GEPDETVSEFATRIQG 272

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSR 113
           +       +     +           ++  V+ED  A + +V + +              
Sbjct: 273 TTENLTSVVTDFLNFARPQQLKREPIELRPVLED-CARETKVTLEFQNFPDRLVVNGDRT 331

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEKFTQIVDGN 171
              ++  NL   A  +      V ++V+   +      SL  NG      E    I    
Sbjct: 332 ALRQVFSNLLRNAAEAARNNTPVRVTVRASATDTSVELSLHDNGTGI-PEEALKNIFIPF 390

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +    V  +  E+   +          V +  L 
Sbjct: 391 FTTKPQGTGLGLALVHRIVTEHGGSIRAGNDL-EGAVFTLSLP 432


>gi|91203575|emb|CAJ71228.1| similar to sensor histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 377

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54
            +     +SS  L  L  +   I H+I +P+G I +S   L     D        +  I+
Sbjct: 144 RQMENEIISSERLAVLGKVSGSIAHEIKNPLGVIDSSAYYLGLKLKDADEKIKTHIDRIK 203

Query: 55  LSSM----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        +   ++   YT +      + ++   +     +  + ++  T     
Sbjct: 204 SQVKKATGIIQNLVDVAKMKEPYTETAGIHAIIENVLTTLNLPQTIAVKKKIEDTLVAKA 263

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQ 166
              +   +  N+ + A  S+   G ++IS  +            ++  G     PE   +
Sbjct: 264 DKGQLEMVFRNIIVNAVQSMEECGILSISCLEKPLEKNRFIEIRIQDTGPGIM-PEDRER 322

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +             ++   +   +  E            L 
Sbjct: 323 IFEPLFSTKTTGIGFGLTICKMIIERHGGTITVESEKGKGAAFILQLP 370


>gi|332968993|gb|EGK08035.1| phosphate regulon sensor histidine kinase protein PhoR
           [Psychrobacter sp. 1501(2011)]
          Length = 508

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 68/228 (29%), Gaps = 22/228 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAII 62
            L  ++ +       + H++ +P+  I   +E   +             L+   +     
Sbjct: 262 RLQHLEQMRKDFVGNVSHELRTPLTVIMGYIETFSDQPDLDPKWRRGFNLMTQQTERMNR 321

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL--- 119
            +  + L               D+ +++       +     +          +  +    
Sbjct: 322 IINDLLLLSRLENEESIRTERVDMPKLMTSIFDDAQAYNKDFGHLIDLHIDSQLDVYGSE 381

Query: 120 -------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                  LNL   A    P+GG++ I+ Q+ K    FS++ NG      E   ++ +   
Sbjct: 382 VYLNSALLNLVTNAIKYTPKGGEIRINWQEVKGGCSFSVQDNGIGI-ASEHIDRLTERFY 440

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +     +    V  + +++  +L  +  ++     +    
Sbjct: 441 RVDSGRSRSTGGTGLGLAIVKHVLYQHGAKLTIQSEENKGSTFTVFFP 488


>gi|322381789|ref|ZP_08055743.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154177|gb|EFX46499.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 596

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 70/241 (29%), Gaps = 28/241 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           +++        L     + + H++ +P+  +    E L +          E+ Q+I   S
Sbjct: 349 RDVTEEHRMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAGTPDERKELAQVIHDES 408

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     +K +             T     +  L    Q     +A ++ +++     + +
Sbjct: 409 LRMGRLVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGN 468

Query: 111 L------SRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160
                       ++L NL   A         VT+     + + +   +  ++  G     
Sbjct: 469 HLVIEGDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPA 528

Query: 161 PEK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +            +    V  +   +  ++  + I       S  L 
Sbjct: 529 EDVPYVFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLP 588

Query: 215 K 215
           K
Sbjct: 589 K 589


>gi|320354104|ref|YP_004195443.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320122606|gb|ADW18152.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 407

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 67/242 (27%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----------EVGIED 47
           + K        +  +  +  L + + H+I +P+ AI+   + L           +  +  
Sbjct: 153 LEKEFQAQFYQAEKMATVGALAAGVAHEINNPLTAINGFAQGLKRRISRLQGKIDDDLFC 212

Query: 48  EVMQLIRLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +  +         +         L F R      G V+    + D   +++        +
Sbjct: 213 DFKEYTETIIKECLRCRDIVQTLLTFSRPTASSRGHVNINQCVTDTLFILKHHFKEQHDL 272

Query: 101 QV-----SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKIN 154
            V           +    +  ++++NL   A  +   GG + I     +       ++ +
Sbjct: 273 TVKTELQEDLPAILGDESQLKQVIINLLTNALDATSNGGLIQIKTYSDETAGVTLVIEDS 332

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E   ++ +    +        I       +   +   +    +          
Sbjct: 333 GCGIPL-ELQDKLFEPFFTTKPVGKGIGIGLSTCYSIVKNHNGEINVTSVVGTGSAFRVS 391

Query: 213 LE 214
           L 
Sbjct: 392 LP 393


>gi|284050377|ref|ZP_06380587.1| multi-sensor Signal transduction histidine kinase [Arthrospira
           platensis str. Paraca]
          Length = 578

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           A+NI    +   +     S + H++ +P+ AI  SL LL     + +  +  +       
Sbjct: 335 AQNISERRAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIEIALL 394

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------- 106
                  +    + +    +G V   +     ++++   I   + +    +         
Sbjct: 395 ETERLVRMVNDILDIERLNSGEVQFQMEACSAQELMMQVINSLQAIAHRDSITLEILPTS 454

Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +         + L NL   A    P    VT+S     +  +F ++  G      +  T
Sbjct: 455 VQLWAARDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEKLKT 514

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     +         +       +  ++  ++  E            + +
Sbjct: 515 IFSRFQQVDASDSRQKSGTGLGLSICQSIIEQHGGKIWVESQLAKGSTFYFTIPR 569


>gi|262190728|ref|ZP_06048958.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae CT
           5369-93]
 gi|262033405|gb|EEY51913.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae CT
           5369-93]
          Length = 438

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 64/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124
           +++           L  +       E    V     +               + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQAELAPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|189466077|ref|ZP_03014862.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
 gi|189434341|gb|EDV03326.1| hypothetical protein BACINT_02447 [Bacteroides intestinalis DSM
           17393]
          Length = 1045

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 56/229 (24%), Gaps = 18/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      + +    L  + + H+I +P+ AI     +L +   ++E  + I +   +  
Sbjct: 675 AKEKAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSSILADTEEQEEKEEYINIIENNNT 732

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106
           +                         +D      +IE+  +     +    + +      
Sbjct: 733 LLLQLVGDILELSKIESGTLEFVFSDLDLNALFKEIEESAQLRQKNEAVPIRYIPEMPDC 792

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ N+   A      G           +   F +   G      +K T 
Sbjct: 793 TVNIERNRLTQVMTNMLNNAMKFTYSGSVTFGYRLKDTDSLYFYVTDTGCGIEEDKKDTV 852

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +      +       +       +  E            L 
Sbjct: 853 FGRFVKLDSFSQGTGLGLSICQSVVENLGGSIGVESEPGKGSTFWFTLP 901


>gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
 gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
          Length = 1343

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 20/231 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEV--MQLIRLSS 57
            M K     ++ M L   +   I H++ +P+  I   + E+LD+V        ++ ++ ++
Sbjct: 816  MDKERQKEVNEMKLRFFI--NISHELRTPLTLILAPVQEMLDKVSDRWLHKQLEYVQKNT 873

Query: 58   MSAIIRLKFMRLAF------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               +  +  +                               E++ +           +  
Sbjct: 874  NRLLHLVNQLMDYRRAELGVFNLKVRPNPIHNVIEKDFSFYERLAQRKQIAYNLHSNAEG 933

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             E +        I+ NL   A      G  +T+++++  +E +  +K  G+     +K  
Sbjct: 934  REILCDPDYMELIVNNLLSNAFKYTGEGKSITVTLKEENHELLLQVKDTGDGI-PFDKQG 992

Query: 166  QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +   +   +     I    V  L   +  R+  E  +      S  L 
Sbjct: 993  KIFERFYQIDNEHLGSGIGLSLVQRLVDLHHGRIELESEEGAGSTFSVYLP 1043


>gi|167465146|ref|ZP_02330235.1| Two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 602

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 70/241 (29%), Gaps = 28/241 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           +++        L     + + H++ +P+  +    E L +          E+ Q+I   S
Sbjct: 355 RDVTEEHRMDKLRKDFVANVSHELRTPLSMVQGYSEALIDDIAGTPDERKELAQVIHDES 414

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     +K +             T     +  L    Q     +A ++ +++     + +
Sbjct: 415 LRMGRLVKDLLDLAKMEAGHMSMTFRELDVNTLFQRIQRKFSGLAKEREIRLICELPEGN 474

Query: 111 L------SRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160
                       ++L NL   A         VT+     + + +   +  ++  G     
Sbjct: 475 HLVIEGDEDRLEQVLTNLLDNAFRHTHPHMSVTLRAELSMYNQEEAVLIEVEDEGQGIPA 534

Query: 161 PEK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +            +    V  +   +  ++  + I       S  L 
Sbjct: 535 EDVPYVFERFYKADKARTRGASGGTGLGLAIVKNIIDAHDGKVQVQSILGKGTTFSIFLP 594

Query: 215 K 215
           K
Sbjct: 595 K 595


>gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator
            [Prevotella oris F0302]
 gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator
            [Prevotella oris F0302]
          Length = 1337

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 21   RICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
             + H+I +P+  I    E L             +Q I  +S      +  +     +  S
Sbjct: 820  NVSHEIRTPLTVIIGLAESLLHTQRFTADIYNKLQGIYRNSNLLRDLISELLDFKKHEQS 879

Query: 77   VDSLIG-----------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            +  L             + ++ +   +   V   V      E     R+  K++ NL   
Sbjct: 880  LAHLCVEAVDWSAFVGSICNMFKEYANSNDVTLNVNEGTDAEVWIDKRQMRKVVNNLISN 939

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHD 180
            A    P+GG V ++ +    + I  +   G      +              +        
Sbjct: 940  ALKHTPQGGNVNVTTECDGRQVILRVTDTGKGIAETDLAHVFDCFYQARDFESLTEMGTG 999

Query: 181  IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I       +  ++   +  + + +        L 
Sbjct: 1000 IGLNLTQNIVQQHHGTISVDSVINEGTTFVVTLP 1033


>gi|229522276|ref|ZP_04411692.1| sensor protein TorS [Vibrio cholerae TM 11079-80]
 gi|229340261|gb|EEO05267.1| sensor protein TorS [Vibrio cholerae TM 11079-80]
          Length = 984

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +         +          +  E  I +   +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLP 690


>gi|126736264|ref|ZP_01752006.1| Probable two-component sensor histidine kinase [Roseobacter sp.
           CCS2]
 gi|126714085|gb|EBA10954.1| Probable two-component sensor histidine kinase [Roseobacter sp.
           CCS2]
          Length = 345

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/242 (7%), Positives = 66/242 (27%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           ++      +  +     + + H++ +P+ A+   +E L     D+    D  + ++   +
Sbjct: 100 EDQTAAEDASQMRRDFVANVSHELRTPLTALLGFIETLNGAAKDDPVARDRFLGIMANEA 159

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108
                 +  +                              +     A    V ++     
Sbjct: 160 NRMTRLVDDLMSLSRVEEDERVRPREHVDLGALLSSVIKGLEPQANAAGVTVTLNLVTTD 219

Query: 109 IDLSRERAKILLNLFMVAHASLPRGG----------KVTISVQDSKNENIFSLKINGNLA 158
             +  +  +++     +   ++  G              ++ +   +    S+   G+  
Sbjct: 220 EMVPGDAGQLVQVFTNLVENAIKYGASGQVVTVRLLPRAMNQRLRCDAVQISVSDKGDGI 279

Query: 159 RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  ++ +            +    +    V  + + ++ RLL E  +     +S  
Sbjct: 280 PAHHI-ARLTERFYRVDNHRSREVGGTGLGLAIVKHIINRHRGRLLIESDEGQGTQVSVF 338

Query: 213 LE 214
           L 
Sbjct: 339 LP 340


>gi|226357435|ref|YP_002787174.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226319425|gb|ACO47420.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 1416

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 63/229 (27%), Gaps = 20/229 (8%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
            N+    S+ DL     +   HD+ SP+  I + LEL++              M     ++
Sbjct: 1186 NVELQRSNADLE-HFAAVASHDLKSPLRTIRSYLELIERRLTGQLDERSMRYMGFATEAA 1244

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDL 111
                  +  +          +                +         +++V         
Sbjct: 1245 ARMDTLIDDLLAYARVGRQRNITRVEPQRVVQEVLGGLTASIQERGAQIRVGDLMPVQAD 1304

Query: 112  SRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++  NL   A    P  R  +V I         +F ++ NG      E + ++  
Sbjct: 1305 ESQLRQVFQNLVGNALKFQPEGRVPEVMIDATRDGRYVLFQVRDNGIGI-SEEYYERVFA 1363

Query: 170  GNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    S      +    V  +  E+  R+    +          L 
Sbjct: 1364 LFQQLHGKSEFPGSGLGLAIVRKIIEEHDGRIWLTSVVGEGTTFHFTLP 1412


>gi|226309650|ref|YP_002769544.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226092598|dbj|BAH41040.1| probable two-component sensor histidine kinase [Brevibacillus
           brevis NBRC 100599]
          Length = 477

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 17/227 (7%), Positives = 64/227 (28%), Gaps = 18/227 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                   + ++  + +   H+I +P+ +I   L++  ++  +  + +    + +     
Sbjct: 252 QKLERNERLAMIGQIAAGTAHEIRNPLTSIKGFLQMFLKLFGDSGMEREKTYTEIMLTEI 311

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116
            +   L   +            +  +   F  +   V+       ID+            
Sbjct: 312 NRINSLVSEFLLLSKPRNIQYSMVDLNTVFEEILPIVESQANLYGIDVQFASCGKLPMVV 371

Query: 117 -------KILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                  ++ +N+      ++   G  +++       ++    +  +G          +I
Sbjct: 372 GDNELLKQVFINICKNGIEAMGEQGSLQISHHFDQDGDKVSIDIHDSGPGIPLY-IIDKI 430

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +  +   +       + H+   ++              +L 
Sbjct: 431 FDPFFTTKEEGTGLGLSVCQKIIHDIGGQIRV-SSKGFGTTFHIMLP 476


>gi|237653315|ref|YP_002889629.1| ATP-binding region ATPase domain protein [Thauera sp. MZ1T]
 gi|237624562|gb|ACR01252.1| ATP-binding region ATPase domain protein [Thauera sp. MZ1T]
          Length = 913

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 62/235 (26%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56
           +     L  +D L     S + H++ +P+ +I    E++ +            + +I   
Sbjct: 671 RAANERLKELDRLKDDFMSSVTHELRTPLTSIRALSEMMLDDPDIDVEDRQRFLGIIVSE 730

Query: 57  SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVSW 104
           ++     +             A  +   +D    +        Q+  D  A         
Sbjct: 731 AVRLSRLVNQVLDMAKIESGHAEWHNTDIDLCELVRHSGDATLQLFRDRGAELHLHLPES 790

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE- 162
                       +++LNL   A   +P G                 ++K NG      + 
Sbjct: 791 VPTLRADHDRLLQVMLNLLSNAAKFVPTGSGRVDVTLSCDGERLRVAVKDNGPGIEPAQQ 850

Query: 163 --KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G  E        +       +      RL  E +       S  L 
Sbjct: 851 PVVFEKFRQGGDERSRPQGTGLGLPISRQIVEHFGGRLWLESVPGEGATFSFELP 905


>gi|219855335|ref|YP_002472457.1| hypothetical protein CKR_1992 [Clostridium kluyveri NBRC 12016]
 gi|219569059|dbj|BAH07043.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 669

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 74/235 (31%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55
            +     +    L + L   + HD+ SP+  I  S+  +       +   + +++  I  
Sbjct: 425 QEASKVQIERERLRSNLLRSVSHDLRSPLAGIKGSVSTILENGAFIDENTKKDLLIGIYN 484

Query: 56  SSMSAIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +   I  ++ +     +         +++ +  +               RV+V+   + 
Sbjct: 485 DTEWLIRLVENLLSMTRFDEGNVNIAKNMELVEEVVSEAVQRSSKCFKYHRVKVNIPEKI 544

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +S +     ++L+NLF  A    P+   V I V +   + IF +  NGN         
Sbjct: 545 IMVSMDGSLIEQVLINLFDNAVKFSPKHSLVEIKVYEESEDVIFEVADNGNGIPEKILPY 604

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +     +       +   +  ++      +   V    + K
Sbjct: 605 IFDRFFTNGSKVSDSRRGVGLGLAICKSIVELHGGKITAYNKKEGGAVFKFNIPK 659


>gi|153954881|ref|YP_001395646.1| sensory transduction histidine kinase [Clostridium kluyveri DSM
           555]
 gi|146347739|gb|EDK34275.1| Predicted sensory transduction histidine kinase [Clostridium
           kluyveri DSM 555]
          Length = 663

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 74/235 (31%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55
            +     +    L + L   + HD+ SP+  I  S+  +       +   + +++  I  
Sbjct: 419 QEASKVQIERERLRSNLLRSVSHDLRSPLAGIKGSVSTILENGAFIDENTKKDLLIGIYN 478

Query: 56  SSMSAIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +   I  ++ +     +         +++ +  +               RV+V+   + 
Sbjct: 479 DTEWLIRLVENLLSMTRFDEGNVNIAKNMELVEEVVSEAVQRSSKCFKYHRVKVNIPEKI 538

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +S +     ++L+NLF  A    P+   V I V +   + IF +  NGN         
Sbjct: 539 IMVSMDGSLIEQVLINLFDNAVKFSPKHSLVEIKVYEESEDVIFEVADNGNGIPEKILPY 598

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +     +       +   +  ++      +   V    + K
Sbjct: 599 IFDRFFTNGSKVSDSRRGVGLGLAICKSIVELHGGKITAYNKKEGGAVFKFNIPK 653


>gi|95930779|ref|ZP_01313511.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
 gi|95133127|gb|EAT14794.1| histidine kinase [Desulfuromonas acetoxidans DSM 684]
          Length = 385

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
           A++I        +   + S + H++ +P+ A+    E + E       + E +Q+I   S
Sbjct: 150 AQDISERKKLDQMKDEMISAVSHEMSTPLTAMLGFCEFMLENEVPAEQQQEFLQIIFKES 209

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115
                 +  +         +  +        ++   +        +    K+D   +   
Sbjct: 210 QRLKGLIDNLLSLQRMRAGMGCVNFTWLNLSMLFAELCQLFGKYSATHTIKVDCPTDFPL 269

Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    + + NL   A    P GG VT++ +    + I S+K  G       +    
Sbjct: 270 VSADQLCLQQAMENLISNAIKYSPNGGTVTVTARQDDGQVIVSVKDEGMGISPVVQEQIF 329

Query: 168 VDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +    +    V  +   +   +  E  +         L 
Sbjct: 330 DRFFRIDTKNGQKVGGTGLGLPLVKEIISLHHGEVWVESEEGQGSTFCFSLP 381


>gi|229057065|ref|ZP_04196457.1| hypothetical protein bcere0026_11810 [Bacillus cereus AH603]
 gi|228720206|gb|EEL71785.1| hypothetical protein bcere0026_11810 [Bacillus cereus AH603]
          Length = 354

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ A    L+LL      ++  +L          
Sbjct: 127 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDTCSEKERKLYIDIAINGIE 186

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++                 + L  L  I  +          ++ S +     
Sbjct: 187 QANHVLTDYLTFAKPSIEKEQQLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 246

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+F     ++P GG + +++          +K  G      E+  ++   
Sbjct: 247 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGM-DQEQIKRLGSP 305

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 306 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIISEKGTGTTFLLTFP 349


>gi|118579571|ref|YP_900821.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502281|gb|ABK98763.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 645

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 69/232 (29%), Gaps = 28/232 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAI 61
             M+ V  L   + HD  + + AI     LL      DE ++            ++    
Sbjct: 274 QKMEAVGQLAGGVAHDFNNILTAIIGYGNLLQMKVGGDETLEKYVNQILYSAERAATLTN 333

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKIL 119
             L F R    +   V     +   E+++   +  D  ++V        +  S +  ++L
Sbjct: 334 SLLAFSRKHIIHVREVSLNEIIARAEKLLSRLVPEDIELRVLVGPDCSILADSTQMEQVL 393

Query: 120 LNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGNLARFPEKF 164
           +NL   A  S+P GG++                    +  +    +   NG         
Sbjct: 394 MNLVTNARDSMPDGGRLTISTEPAFLDREFVHRQGYGEPGSFVKVTFSDNGVGMDEG-IR 452

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +    +        +    V  +  +++  +            +  L 
Sbjct: 453 ERIFEPFFTTKETGKGTGLGLAIVYGIVKQHEGYIDVSSQPGRGTTFTIYLP 504


>gi|308271994|emb|CBX28602.1| hypothetical protein N47_G39260 [uncultured Desulfobacterium sp.]
          Length = 503

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 63/232 (27%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
           +         S  + +L  L + + H+I +P+  I     L+ E    D  +Q       
Sbjct: 261 LQDAQSQLDQSEKMASLGRLAAGVAHEINNPLTGILMYGNLMKEKMEPDHPLQTNITYIL 320

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTG 106
                    +K +      +G+      +  + +     I                    
Sbjct: 321 EDAERCREIVKNLLAYSRQSGTSQERFSMNVMVEESLRLIRDQSLFMNLTTKKELSDECM 380

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +  ++++NL M A  ++   G   +     + +      +   G      ++ 
Sbjct: 381 MVKADRNKMCQVVINLVMNAIDAMDPNGTLTLKTYRSNDQKRACLEITDTGFGIPDEDRL 440

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +  +NK  ++ +            L 
Sbjct: 441 -RIFDPFFTTKDPGKGTGLGLSTAYGIIKDNKGDIIIKETGPEGTTFLVELP 491


>gi|303328342|ref|ZP_07358780.1| sensor histidine kinase [Desulfovibrio sp. 3_1_syn3]
 gi|302861672|gb|EFL84608.1| sensor histidine kinase [Desulfovibrio sp. 3_1_syn3]
          Length = 505

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 64/238 (26%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLI 53
           M +N         +  L  +  + + I H+I +P+G I +S ELL       +    +++
Sbjct: 257 MHRNRLLENELHSNEKLAGMGRVIASIAHEIRNPLGIIRSSAELLQRRTDKADSGTARIL 316

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIG----------LGDIEQVIEDFIAVDKRVQVS 103
                 ++   + +     Y                   +    +       V    +  
Sbjct: 317 GAIYDESVRLSQTVNDFLDYARPRQPRQDLVDVNLVLDQVMAFLEGELGRHGVAVERETE 376

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGN 156
                        +   N+ +    ++   G           + +            +G 
Sbjct: 377 AGLFVHGDKDLLYRAFYNILINGQQAMDGPGIVRIRGALEHPAQESGPGRVRLEFLDSGP 436

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               P   + ++D    +      +    V  +   +  ++  E   +   ++  LL 
Sbjct: 437 G-FDPAVLSSLLDPFFTTKDGGTGLGLPIVQSIITSHGGQIELENGPEGGALVRVLLP 493


>gi|326775398|ref|ZP_08234663.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326655731|gb|EGE40577.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 697

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 24/234 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLS 56
                 L        + S + H++ +P+  I   LE   +   + +       ++   L 
Sbjct: 459 SAHRARLEEQRKA--MVSDVAHELRTPLSNIRGWLEAAQDGLADPDPAFVSSLLEEAVLL 516

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEK 108
                          G        +   ++   +                    +     
Sbjct: 517 QHIIDDLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAGVTLTVAGAAPGPAL 576

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE--- 162
                   + + NL   A    P GG+VT+     +         +   G+     +   
Sbjct: 577 RADPVRLRQAVSNLVSNAVRHTPEGGRVTLRAYACEEEAGTVAVEVADTGSGIPAEDLPH 636

Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +      +         +    V  L   +   +    +          L 
Sbjct: 637 VFDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVVGEGSTFVLRLP 690


>gi|229527362|ref|ZP_04416754.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae 12129(1)]
 gi|229334994|gb|EEO00479.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae 12129(1)]
 gi|327485183|gb|AEA79590.1| Osmolarity sensory histidine kinase EnvZ [Vibrio cholerae
           LMA3894-4]
          Length = 438

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 66/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +    +             + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAGLAPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|207739510|ref|YP_002257903.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
 gi|206592889|emb|CAQ59795.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum IPO1609]
          Length = 675

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 72/234 (30%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL     ++ + +    +   + 
Sbjct: 287 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 344

Query: 62  I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                     + ++   +G V   I       + +  +   + +A  K++ +        
Sbjct: 345 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYPPVP 404

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG + + VQ S    + +++  G        P  
Sbjct: 405 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPEGLVATVRDTGIGIEPTFLPHV 464

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
           F +    +           +       L   +  R+       +    ++  L 
Sbjct: 465 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASNGANLGTTMAVTLP 518


>gi|108758491|ref|YP_632154.1| sensory box sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108462371|gb|ABF87556.1| sensory box sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 700

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------------DEVGIEDE 48
               + S  L A+  L + + H+I +P+  + ++L  L                  +E+ 
Sbjct: 446 QAQLVVSDRLAAVGTLAAGVAHEINNPLAFVLSNLSFLAGELHALAPELPSGRMAELEEV 505

Query: 49  VMQLIRLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + +    +            F R       +V+    L     +    + +  ++   + 
Sbjct: 506 LREATDGAHRVRQIVRDLRTFSRGDDEVATAVNVQAVLESAITLARSELKLRAQLVRDYC 565

Query: 106 GEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLAR 159
                        ++ LNL + A  ++P G      V+     + +  I  ++  G    
Sbjct: 566 EVPLVEGNEGRFGQVFLNLLINAAQAIPMGQTEQHEVRLSLRSAGDRVIIEVRDTGVGM- 624

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +I D    +    +   +       +       +  E  +         L 
Sbjct: 625 PPEVRARIFDPFFTTKPVGEGTGLGLSICHGIVTGFGGDISVESEEGRGSTFRVSLP 681


>gi|163939246|ref|YP_001644130.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861443|gb|ABY42502.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 402

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 66/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ A    L+LL      ++  +L          
Sbjct: 175 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDTCSEKERKLYIDIAINGIE 234

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++                 + L  L  I  +          ++ S +     
Sbjct: 235 QANHVLTDYLTFAKPSIEKEQQLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 294

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+F     ++P GG + +++          +K  G      E+  ++   
Sbjct: 295 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGM-DQEQIKRLGSP 353

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 354 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIISEKGTGTTFLLTFP 397


>gi|163941246|ref|YP_001646130.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|163863443|gb|ABY44502.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
          Length = 510

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 275 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 334

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
           I          +   +       + +    + ++   I     +     +    +     
Sbjct: 335 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDI 394

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
              S +  ++L+N+   A  ++P GG + I     +N      +   G      E+  ++
Sbjct: 395 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGI-PEERMARL 453

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 454 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 500


>gi|88861389|ref|ZP_01136019.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
 gi|88816655|gb|EAR26480.1| putative two-component member protein [Pseudoalteromonas tunicata
           D2]
          Length = 1106

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 56/215 (26%), Gaps = 21/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            + H+I +P+ AI    ++L +  ++ E ++ +   S SA   L  +             
Sbjct: 544 NMSHEIRTPMNAIIGFSDILLDTALDKEQLKHLSTISRSAKSLLHLLNDVLDSAKLDKGK 603

Query: 81  IGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLFM 124
           + L +               +       +  ++   + +             +IL NL  
Sbjct: 604 LELENRVFSLTDEIDTVVSTLWLQAKQQNLALEADISPKMASHYLGSPERLRQILTNLIG 663

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSH 179
            A     +G         ++    F +   G      +           D ++       
Sbjct: 664 NAVKFTAQGKVTVKIYPSAEQSVTFEIIDTGIGMSAEQLEHVFDAFSQADASMSRKYGGT 723

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L       +  E       +    L 
Sbjct: 724 GLGTTISKQLVELMGGEIEVESELGKGSIFRFTLP 758


>gi|262164925|ref|ZP_06032663.1| sensor protein TorS [Vibrio mimicus VM223]
 gi|262027305|gb|EEY45972.1| sensor protein TorS [Vibrio mimicus VM223]
          Length = 968

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 56/233 (24%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL E  +       +++ + S  
Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +     Y+      + +      +   +     +                    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQAHFDLYRLVRETHELMQSRALEKGITLSYQFEDDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                      ++L NL         +    + IS         F+++ +G      +  
Sbjct: 577 RYWQGDEIRIGQVLNNLVGNGIKFTEQGHVCIRISQDPEGQGIRFAVEDSGIGIAEQDQA 636

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F                +       L       L            S +L 
Sbjct: 637 SLFDAFTQAEAGRRKQGTGLGLAISRKLVQAMGGELQLSSQLGQGSCFSFILP 689


>gi|224540067|ref|ZP_03680606.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518298|gb|EEF87403.1| hypothetical protein BACCELL_04980 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1039

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     +L     E+E  + + +   + 
Sbjct: 664 LTTAKELAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNN 723

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSWT 105
            +        + L+    G+++      ++ +++ +                + V+ +  
Sbjct: 724 TLLLQLISDILDLSKIEAGTLELNYSNIELNELMRELERGFLLRVKTDAVKLEFVEPAGP 783

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     +++++NL   A     +G          +NE  F +   G      +K  
Sbjct: 784 CMAYTEKNRLSQLMINLVTNAIKFTEKGSIRFGYEMR-ENELYFYVADTGCGI-PKDKQQ 841

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I    V   S      +       L      R+  E  +         L 
Sbjct: 842 NIFGRFVKLNSFAQGTGLGLSICKTLMDHMGGRIGVESEEGKGSTFWFTLP 892


>gi|218778561|ref|YP_002429879.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759945|gb|ACL02411.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1032

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 67/241 (27%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +        M+ +A L S I HD  + +  I    E+L         E   ++ I  +S 
Sbjct: 649 EEKIQQAQKMESIANLASGIAHDFNNILTPILGLAEMLTEDLRTGSPEQIKVKEIFKASE 708

Query: 59  SAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDL 111
            A   +  +      +      V     L D+  +    I  +  +Q +           
Sbjct: 709 RARDLISQILAFGRKSEEKLGPVKFQYILDDVLTLCRSSIPKNIEIQSAIQKNCGAIWAN 768

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----------------KNENIFSLKING 155
           + +  +I +NL   A+ ++       I V                     + +FS+   G
Sbjct: 769 ATQLHQIAMNLITNAYHAMENMDGAKIEVSLREVDRGSDDHGSSEILGDRQLLFSVSDTG 828

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I +    +        +    V  +  E    +  E             
Sbjct: 829 AGI-PPEIMDKIFEPYFTTKKQGKGTGLGLAVVYGILKEYGGDIRIESDVGKGSTFHLYF 887

Query: 214 E 214
            
Sbjct: 888 P 888


>gi|116624972|ref|YP_827128.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116228134|gb|ABJ86843.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 614

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 26/238 (10%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIED----------- 47
           + +   L          +   + + H++ +P+  I    ELL +  +             
Sbjct: 366 EQLARALEGARAATVAKSRFLASVSHELRTPLNGIIGFSELLYDAKLGHLSGEQIEVMGD 425

Query: 48  ------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                  ++QLI      + +    M      +     +  + D+ + + +   +    +
Sbjct: 426 ILTSARHLLQLINDILDLSKVEAGRMEFRPERSRLQPLVFEVRDVIRPLAERKNLVLATE 485

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF 160
           V              ++L N    A    P GG VT+ + ++ +      ++  G     
Sbjct: 486 VPEDLVAHLDPGRFRQVLYNYLSNAVKFTPAGGSVTVRIARERQLWFQLEVEDTGIGIAA 545

Query: 161 PEK---FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    F +          D    +       +       +          V SALL 
Sbjct: 546 EEIPRLFQEFSQLPNSRKADQGTGLGLALTRHIVEAQGGSVTVRSELGRGSVFSALLP 603


>gi|328952161|ref|YP_004369495.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
 gi|328452485|gb|AEB08314.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
          Length = 978

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 67/243 (27%), Gaps = 31/243 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53
           M K +      M+ +  L   I HD  + + A+    E   +   +D V++         
Sbjct: 589 MEKQLHQA-QKMEAIGTLAGGIAHDFNNVLMAVMAYTEDAMQDVPDDSVLRYKLGRALQS 647

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            R ++      L F R        +     + +  +++   +     +Q         + 
Sbjct: 648 GRRAADLVKQILTFSRPQKHERQPIRLSPIVTESLKMLRATLPSTIIIQQEVDHNTDAIL 707

Query: 113 RE---RAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKI 153
            +     ++LLNL   +  ++                            + +    ++K 
Sbjct: 708 GDATQMHQVLLNLCTNSAHAMREKGGILKIALKNTHLDEAAAAKWQNAAAGSYVQLTVKD 767

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           NG      +   +I +    +    +   +    V  +   +   +  E           
Sbjct: 768 NGVGM-DRQIQERIFEPFYTTKKPGEGTGMGLSVVHGIVKAHGGDISLESSPGQGTTFHL 826

Query: 212 LLE 214
           L  
Sbjct: 827 LFP 829


>gi|229161531|ref|ZP_04289511.1| hypothetical protein bcere0009_23170 [Bacillus cereus R309803]
 gi|228621776|gb|EEK78622.1| hypothetical protein bcere0009_23170 [Bacillus cereus R309803]
          Length = 435

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 11/223 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           ++    +  M++V+ L + I H++ +P+  +    +LL          +  IE  + +L 
Sbjct: 208 RSKLIKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPNLTPESRDKYIEHILEELN 267

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           R   +           +               I  ++         +   ++   I  ++
Sbjct: 268 RAQIIIDDYLTFAKPASEKLDHISVEQELNRVINMILPLCNMNTIHITKDFSEATIVGNK 327

Query: 114 ERAKIL-LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  +   LNL   A  ++P GG + IS   + N+ I  ++ +G      E+  +  +   
Sbjct: 328 QHFQQCVLNLIKNAIEAMPDGGILNISSSINNNKVIIRIEDSGVGM-SQEQINRFGEPYF 386

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +     + +    +  L    +      L     K
Sbjct: 387 STKTKGTGLGTMVAVKIIETMQGTLKIRSVITKGTTLIITFPK 429


>gi|220931317|ref|YP_002508225.1| integral membrane sensor signal transduction histidine kinase
           [Halothermothrix orenii H 168]
 gi|219992627|gb|ACL69230.1| integral membrane sensor signal transduction histidine kinase
           [Halothermothrix orenii H 168]
          Length = 331

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 63/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           + S I HDI +P+ +I    E L     ++    ++  +++ + +      +  +     
Sbjct: 111 VMSNISHDIRTPLTSILGYAEALKDGLAEDDEEREKYREIMVMKARRLKKLVDKLFFLAR 170

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SWTGEKIDLSRERAKILL 120
                + L         +     +D   ++                          +++ 
Sbjct: 171 LEAGEEELDFKVYDLAEVTRECIIDFLPRINKEDLELKTEIPEQECLIYADHLALERMID 230

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVE--ST 175
           NL   +      GG + + +   + + +  +   G        P  F ++  G+      
Sbjct: 231 NLISNSINYGKEGGIIGVKLFRQEQKYVLQVWDKGPGITEDKLPHIFNRLYVGDKSVERQ 290

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    +       L  ++  R+  +       + S    
Sbjct: 291 ISGSGLGLAITRRLIEKHNGRITVDSKPYEKTIFSLHFP 329


>gi|220903475|ref|YP_002478787.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219867774|gb|ACL48109.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 666

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 57/241 (23%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           M +    +  + +   ++  + + H+I +P+  I     L+    +  +    +     +
Sbjct: 270 MLREAKESAEAANAAKSIFLANMSHEIRTPMNGIMGMAHLVLNTDLSPQQRDYVEKIHST 329

Query: 60  AIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVI------------EDFIAVDKRVQVS 103
                      +  +      +D           +                 ++  +   
Sbjct: 330 CESLLDIINDLLDFSKIEANHMDLEALPFQPVNEMEAVLALLRPRTQHKNCVLESHIDPD 389

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLAR 159
                +  +    +ILLNL   A     RG           + +       +   G    
Sbjct: 390 IPQTLVGDALRLRQILLNLGGNAIKFSERGVVRVDLQLLHREGNSVTLACLVSDEGIGM- 448

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+  +I          +        +       L      R+  +       V    L
Sbjct: 449 SEEEQERIFTPFSQADTSITRRFGGTGLGLALCRRLVELMGGRIHVQSAPGKGSVFRVEL 508

Query: 214 E 214
            
Sbjct: 509 P 509


>gi|149175132|ref|ZP_01853755.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846110|gb|EDL60450.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 568

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 60/239 (25%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +   +     +  +     S + H+I +P+ AI    E+L E  I+ E   LI     + 
Sbjct: 153 LKSALNMVEQANQVKNEFLSNMSHEIRTPMTAIIGYSEVLKESVIQAEQHDLIETIQRNG 212

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSW 104
              L+ +      +        L          +                     +  S 
Sbjct: 213 DHLLQVINDILDISKIELGQCELKTEACFPLQIVQEVIALHRPKAVQKGLRLLTNIHESI 272

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
                       ++L NL   A              T +  + +    F++   G     
Sbjct: 273 PETIQSDPIRLKQVLNNLVSNAVKFTNNGFVRIEIRTFNRSNFERLLQFNVADTGIGI-S 331

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +   +I D        +        +       L      +L  +   +   + S  L
Sbjct: 332 KDNLKRIFDPFTQADSSMSRPYSGTGLGLTLSQKLVQLLGGKLSVQSTVNQGSIFSVTL 390


>gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
 gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
            9485]
          Length = 1352

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 72/245 (29%), Gaps = 33/245 (13%)

Query: 2    AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49
             +    + ++ +L           + + H++ +P+  I    E L E         +   
Sbjct: 833  ERTAELSRANAELARSVRVKDEFLANMSHELRTPLNTILTLSESLLEELRGPLNERQRAS 892

Query: 50   MQLIRLSSMSAIIRLKF-MRLAFGYTGSVDSLIGLGDIEQVIEDF-----------IAVD 97
            +QLI  S    +  +   + +A    G ++ +  +  +  V E                 
Sbjct: 893  IQLIETSGRHLLTLINDVLDVAKIEAGRMELVKEVVAVSDVCESSLVLIKEQAAKKQIRL 952

Query: 98   KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKING 155
              V  +     +   R   +IL+NL   A    P     ++ ++   ++    F++   G
Sbjct: 953  HCVIDAPHTRFLADPRRLKQILVNLLSNAVKFTPEGGSVELRVTTDTAQGTIAFAVSDTG 1012

Query: 156  NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                  +   ++    V          +   +    V  L   +   +          V 
Sbjct: 1013 IGIAPDQLP-RLFQPFVQLDSSLTREHEGSGLGLALVRRLVDLHGGSVSVTSTPGSGSVF 1071

Query: 210  SALLE 214
            +  L 
Sbjct: 1072 TVTLP 1076


>gi|167621903|ref|YP_001676688.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167351644|gb|ABZ74374.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 579

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 57/234 (24%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+    N +S    + L   + H++ +P+  +      L    ++   +  + +   S  
Sbjct: 199 AQTEAANAASQAKSSFLA-MMSHELRTPMNGVLGMAHALTLSKLDSHQVSHLDMLLRSGQ 257

Query: 62  IRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWT 105
             +  +      +              D       +E +  D   +        V  S  
Sbjct: 258 GLMTILNDLLDISKIEAGKLELEIIPFDLSELGRQVEDLWRDAAHIKGVSLVCEVAFSGP 317

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L+NL   A     +G       +        ++   G      ++  
Sbjct: 318 HWVSGDPTRLRQVLINLVSNALKFTSQGEVRLSIWRSEDGLCQIAVTDTGPGIPVNQQAL 377

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +              +       L      R+  +  +      +  L 
Sbjct: 378 LFQAFSQADASITRKFGGTGLGLAICKQLVSLMDGRIDLDSREGVGSTFTVSLP 431


>gi|227432425|ref|ZP_03914414.1| signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
 gi|227351828|gb|EEJ42065.1| signal transduction histidine kinase [Leuconostoc mesenteroides
           subsp. cremoris ATCC 19254]
          Length = 446

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 71/231 (30%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           M  ++   L    + A   +   H+  +P+ AI   +E L      +     + +Q++  
Sbjct: 215 MLYDLTEVLKLERMQADFLANASHEFKTPLTAITGFVETLQGDAGADEETRTQFLQIVAD 274

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +      +  +         VD  I       + + +    D   V     ++      
Sbjct: 275 EAKRLSALVSDILSLSRMQHKVDEKISNLQISAIVEQQLEKIDTKTVTVHNDIAPDFSVS 334

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
            ++ + + I+ NL   +       G+V IS      +    +  +G      +    F +
Sbjct: 335 GIASDVSTIVQNLLTNSVKYNKTDGEVWISAYKDTQQWQIKVSDSGIGIPLNQQSRIFER 394

Query: 167 IVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              G+            +    V  + +++   +  +        +S +L 
Sbjct: 395 FYRGDESRQRKIASGTGLGLAIVNEIVNQHNGGINIKSQVGVGTTISVILP 445


>gi|251796378|ref|YP_003011109.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247544004|gb|ACT01023.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 486

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 58/240 (24%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           +N+        L     + + H+I +P+  +    E L +          E++Q+I   S
Sbjct: 242 RNVTEEHKLEKLRRDFVANVSHEIRTPLSMLQGYSEALLDDIVASPEERKELVQVIYDES 301

Query: 58  MSAIIRLKFMRLAFGY--------TGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGE- 107
           +     +                     D    +     +        +  +        
Sbjct: 302 LRMGRLVNDFLDMARMEAGHVELSLQEFDLRNVIRRVHRKFQVYAKERNVSLNADLPDTP 361

Query: 108 ---KIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
                       ++L NL   A    P           +  ++       +   G     
Sbjct: 362 LAVHEADEDRIEQVLTNLMDNALRHTPAGKSIKIAGQTATINNLKFVKLIVADEGQGIPS 421

Query: 161 PE---KFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +            +    V  +  ++  R+  + +       + LL 
Sbjct: 422 EDVPYIFERFYKADKARKRGASGGTGLGLAIVKNIITQHNGRIEVDSVLGKGTTFTLLLP 481


>gi|16079368|ref|NP_390192.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310229|ref|ZP_03592076.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314552|ref|ZP_03596357.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319474|ref|ZP_03600768.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221323750|ref|ZP_03605044.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|466195|sp|P35164|RESE_BACSU RecName: Full=Sensor histidine kinase resE
 gi|410142|gb|AAA67498.1| ORFX18 [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634746|emb|CAB14243.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 589

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +          E+ Q+I  
Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASSEEDRKEIAQIIYD 410

Query: 56  SSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S+     +  +                    +      +     V ++           
Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYEKINVNEFLEKIIRKFSGVAKEKNIALDHDISL 470

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E +    +  ++  NL   A      GG V+ISV   K+     +K +G+     + 
Sbjct: 471 TEEEFMFDEDKMEQVFTNLIDNALRHTSAGGSVSISVHSVKDGLKIDIKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +   +      D     S  + 
Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHNGSITVHSRIDKGTTFSFYIP 586


>gi|148265388|ref|YP_001232094.1| histidine kinase [Geobacter uraniireducens Rf4]
 gi|146398888|gb|ABQ27521.1| histidine kinase [Geobacter uraniireducens Rf4]
          Length = 249

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 71/222 (31%), Gaps = 19/222 (8%)

Query: 11  SMDLV--ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           +  +    +L + + H++ SP+  I ++ ++ L E  + + V +++    + A     F 
Sbjct: 26  NEKMAELGMLSTGMVHELNSPLSVIVSAAQMILREEDLPEFVKEMVERIGLEAQRLSYFT 85

Query: 68  RLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
           R    +    +++             +  +  +       V          ++ +     
Sbjct: 86  RSLLSFARKEEAVEAEADVNLVLQEVMAFLKYEAQKRSISVIEEKDYGLPPIAADGNRLK 145

Query: 117 KILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
           ++ +NL M A  ++  GG +    ++ D        +   G      E    I +    +
Sbjct: 146 QVFINLIMNALQAMEEGGTLLLKTALTDDGRFLEAQVADTGRGI-AAEAVEHIFEPFYTT 204

Query: 175 TI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +   +  +    +      R+  + I         L  
Sbjct: 205 KVAGEGTGLGLFISRNIVERLGGRIQVKSIVGEGTTFVLLFP 246


>gi|134299132|ref|YP_001112628.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Desulfotomaculum reducens MI-1]
 gi|134051832|gb|ABO49803.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
          Length = 509

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 68/219 (31%), Gaps = 12/219 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +        +++V  + + I H++ +P+  +   L++L              L       
Sbjct: 288 EEEMVRFDRLNMVGEMAAGISHEVRNPMTTVRGFLQMLQGKDDCSRYKDYFTLMIQELDR 347

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQVSWTGEKIDLS 112
               +        +  S +   +I  ++                  +V+ +   + +  S
Sbjct: 348 ANSIITEFLSIGRNTPSNLEKQNINFIVNSLKPLLQADAFGQGKYVQVETNKVPDLLLDS 407

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +E  +I+LNL      ++  GG++ I       + + +++  G      E   ++     
Sbjct: 408 KEIRQIILNLCRNGLEAMTSGGRLIIRTYLENRKVVLTVQDEGEGI-RSEVMEKLGTPFF 466

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            +  +   +       +A  +   +  +   +       
Sbjct: 467 TTKANGTGLGLSICYSIAARHNAVISIDTSAN-GTTFYV 504


>gi|118579570|ref|YP_900820.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118502280|gb|ABK98762.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 983

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 67/244 (27%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            KN+   L  S  + A+  L   + HD  + +  I    E+L    +        ++ + 
Sbjct: 598 RKNLEGQLYQSQKMEAIGQLAGGVAHDFNNILTVIIGYAEILLLSMEREHALRYHVEQVL 657

Query: 55  LSSMSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            ++  A      +                 +   GL  + + +       K + V     
Sbjct: 658 TAAGRAAELTAGLLAFSRKQLLHMKQLDLGEVARGLRKMLRRLIPEDIDFKTIIVEKELT 717

Query: 108 KIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152
            +    +  ++++NL   A  ++P+                        +       ++ 
Sbjct: 718 ILADKGQIEQVIMNLVTNAKDAMPKGGSLTLEIAPATMDEQFLQQHGFGEPGGYACITIA 777

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+     E   ++ +    +        +    +  +  ++   +  +         S
Sbjct: 778 DTGHGM-DEETRKRLFEPFFTTKEAGKGTGLGTAIIYGIVKQHNGFISVDSEPGRGSTFS 836

Query: 211 ALLE 214
             L 
Sbjct: 837 IYLP 840


>gi|307132911|ref|YP_003884927.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Dickeya dadantii 3937]
 gi|306530440|gb|ADN00371.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Dickeya dadantii 3937]
          Length = 467

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGQEDEYLAESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++                   D    LG++      +    +                
Sbjct: 277 CNAIIEQFIDYLRTGQEMQMEVADLNAILGEVVASESGYEREIESELAWGELPMKVSPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171
             + + NL + A        +V+   +       F ++ +G           F   V G+
Sbjct: 337 IKRAVANLVVNAARYGNGWIRVSSGREL--QRAWFQVEDDGPGIDPSQLTHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A L 
Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHNGSLDVGASERGGLRVRAYLP 437


>gi|298675480|ref|YP_003727230.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288468|gb|ADI74434.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 754

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           +AK      S   +     S + H++ +P+ +I     ++ E         + + M  I 
Sbjct: 514 LAKANEELKSLDKMKDEFLSNVSHELKTPLTSIKGYSNIIYEETLGKLNDEQKKTMNTIV 573

Query: 55  LSSMSAIIRLKFMRLAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRV-QVSWT 105
            +S      +  +                 V     + D  +     I     +   + +
Sbjct: 574 RNSERLRRLVDSLIYMSMSQAGKIEYSFEPVQISKVIDDAIEDTNFEINKKGLILNKNVS 633

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                ++ ++AK+   L      A      GG++T+   +        +   G       
Sbjct: 634 ENIPQINGDKAKLTDMLTNLLDNATKFTSSGGEITVEAFEEDEHIHIKVTDTGVGIPEDL 693

Query: 161 -PEKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P  F +    +           +  Y   L+   +   +  + I+     +   L 
Sbjct: 694 IPYLFQRFYQIDSSIRRKYGGTGLGLYICKLIVDAHYGNIWIDSIEGKGTTVHVKLP 750


>gi|296111035|ref|YP_003621416.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295832566|gb|ADG40447.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 619

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 65/241 (26%), Gaps = 33/241 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
                + S     +  S + H++ +P+ ++ + ++ L      +  +    + +++  + 
Sbjct: 365 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAINDPDMAQNFLGVVQDETQ 422

Query: 59  SAIIRLKFM---------------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
             I  +  +                      L        D +I          +     
Sbjct: 423 RMIRMINDLLALSRLDQGTMEVKLEVINLNSLFNFVLNRFDMIIENDAKNADTPNKSYNI 482

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +R   +          +  ++L N+   A    P GG +T  +  +K   I S+   G  
Sbjct: 483 QREFTNEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 542

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +       +  +   R+  + +++        
Sbjct: 543 IPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYIS 602

Query: 213 L 213
           L
Sbjct: 603 L 603


>gi|188997651|ref|YP_001931902.1| integral membrane sensor signal transduction histidine kinase
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932718|gb|ACD67348.1| integral membrane sensor signal transduction histidine kinase
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 671

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 64/231 (27%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV---------------GIED 47
               + S  L     L + I H+I +P+  I+ +  ++                     +
Sbjct: 436 ENQIIQSEKLAVIGRLAAGISHEIKNPLAIINQNAFMVKRRIQKLCSNVDNIDNILESIE 495

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWT 105
            + + +  ++      L F +  +     V+    + +  ++                  
Sbjct: 496 RIERNVIRATDIIERLLNFSKPYYTKAEKVNLREVVEEAIKLAILQAQKSNISFSKKLVD 555

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPEK 163
                      ++ +NL + A  ++   GK+TI +            +K  G      + 
Sbjct: 556 AYVKGDKNALIQLFINLILNAIEAIENKGKITIKITPLKRTENVRVVIKDTGKGI-SEDI 614

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +       +  ++  ++L    +           
Sbjct: 615 LDKIFEPFFTTKEKGTGLGLAVSYRILQDHGGKILVNSKEGEGTEFILTFP 665


>gi|78186516|ref|YP_374559.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78166418|gb|ABB23516.1| multi-sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 596

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF------ 66
             S + H++ +P+ +I    E L +  + D       +++I   S      +        
Sbjct: 367 FVSSVSHELRTPLTSIRGYAETLLDGAMNDPEHAQAFLRIILQESEQLTALVNDVLDLSK 426

Query: 67  --MRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                     G VD    +   +E +   F   + + ++S       +  + A + + + 
Sbjct: 427 IESGRIEYTYGPVDLSRVVEHSMEMLRPAFEKKEVKFELSIPPGLPPVQADEAYLGIVIR 486

Query: 124 MVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
            +   ++        KV      + +   F ++ NG+     +   +I +          
Sbjct: 487 NLLDNAVKYVDAGTGKVRFRAFRTGDSVQFDVEDNGSGIAHQDL-ERIFERFYRVDKARS 545

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +    V  +   +K  +      +     S  L 
Sbjct: 546 RQLGGTGLGLSIVKHIVLSHKGDIKVRSRLNRGSTFSVTLP 586


>gi|330001427|ref|ZP_08304008.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Klebsiella sp. MS 92-3]
 gi|328537669|gb|EGF63882.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Klebsiella sp. MS 92-3]
          Length = 424

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 69/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L     M  V  L   + HD  + +  I  SLEL++    +   +     ++ 
Sbjct: 50  RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 109

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R    +  +V     L ++ +++   +     +++           +
Sbjct: 110 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 169

Query: 115 RAKILLNLFM---VAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++   L      A  ++              +VT S    ++     +  +G+     
Sbjct: 170 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 228

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               ++ +    +        +    V     ++  R+  E        +   L +
Sbjct: 229 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 284


>gi|325920495|ref|ZP_08182421.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
 gi|325549022|gb|EGD19950.1| PAS domain S-box [Xanthomonas gardneri ATCC 19865]
          Length = 1364

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +    + ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPVAALDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKLKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVVTLEK 872


>gi|325915918|ref|ZP_08178214.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325537885|gb|EGD09585.1| PAS/PAC sensor hybrid histidine kinase [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 673

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 277 LDSERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHPNYKGLSVI 336

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                    +      L   E   +    V +   
Sbjct: 337 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALSTQELAADGKDQVLELHV 396

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    ++L NL   A    P  G++ ++++      + S++ +G+     
Sbjct: 397 PPTPCLVLGDATRLQQVLWNLLSNAIKFTPAHGRIDVTIERDDGHLLVSVRDSGDGIAAE 456

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 457 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGQGATFTVRLP 515


>gi|312891789|ref|ZP_07751296.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311295731|gb|EFQ72893.1| PAS/PAC sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 508

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 68/211 (32%), Gaps = 19/211 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRLSSMSAIIRLKFMRLAFGYTG 75
            H++ +P+ +I  +L+LL     ++   Q         +  +    +    + ++   +G
Sbjct: 295 SHEMKTPLTSIKGNLQLLQRKAQQNNDTQYLSGFETASKSIARLEKLIYDLLDVSKIQSG 354

Query: 76  SVDSLIGLGDIEQVIED--------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
            V+ +    + +Q+I +               ++ S   E         ++LLNL   A 
Sbjct: 355 KVELIFSKFNFQQLIIESVNGVQATTQTHKLVMKGSSDIEVTADFGRLEQVLLNLLNNAV 414

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNV-ESTIDSHDIQF 183
              P G +V +           S+   G      +    F +    +          I  
Sbjct: 415 KYSPTGKEVIVHTCILPEYVKVSITDTGVGIHERDHKRIFERFYRADQISEKFPGVGIGL 474

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           Y    +  E++  L  E  +    V S  + 
Sbjct: 475 YVSNEIIKEHRGTLWVESQEGKGAVFSFTIP 505


>gi|296273569|ref|YP_003656200.1| integral membrane sensor signal transduction histidine kinase
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097743|gb|ADG93693.1| integral membrane sensor signal transduction histidine kinase
           [Arcobacter nitrofigilis DSM 7299]
          Length = 368

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           ++ N+   +  +     +     S + H+I +P+ AI    ELL +  +E +  +     
Sbjct: 129 LSSNVNKMVEELSGMDYMRKDFMSNVSHEIKTPVTAITGFAELLLDSPLEIQKQKEYLEL 188

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
                 RL  +         +D+   +   + +  D       + +S      D   +  
Sbjct: 189 IHQESRRLSLLCEDMLQMSRLDNQQIISKKDMIRVDEQIRRAVIVLSQKWSDRDQKFDLN 248

Query: 115 ------------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                          + +NL   A         + I    + NE I  +K  G   +   
Sbjct: 249 LCDVVIESDKSLLMHVWMNLIDNAMKYSSLNSTIYIDEYVNGNELIVKIKDEGIGIKSEK 308

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             + F +   G+         +    V  +       +  E  ++    +  
Sbjct: 309 IEKIFDKFYQGDESHKKQGSGLGLSIVKRILELLGATIHYESQENIGTTVVV 360


>gi|189467145|ref|ZP_03015930.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
 gi|189435409|gb|EDV04394.1| hypothetical protein BACINT_03529 [Bacteroides intestinalis DSM
           17393]
          Length = 979

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 19/227 (8%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAI 61
               L S  L +   + + H+I +P+ AI     LL   ++    +E + +I  ++   +
Sbjct: 608 REKALESERLKSAFLANMSHEIRTPLNAIVGFSSLLTATEDEQEREEFISIIENNNQLLL 667

Query: 62  IRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +             +   +           +    +       V + +  +       
Sbjct: 668 QLVSDILDLSKIEANTLEFNYRDVDLNGLAKDVESTVRRRLKPNVVLEFIPGAAQCHVQT 727

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                +++L+NL + A      G       +    E  F +K  G      E   +I + 
Sbjct: 728 EKNRLSQVLINLLVNATKFTQTGSIT-FGYEIRGKELYFYVKDTGMGI-SQEDQNKIFER 785

Query: 171 NV--ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
               ++      +       +  + K R+  E             + 
Sbjct: 786 FTKVDTFTQGTGLGLSICKNIIEKMKGRIGVESEGKGKGSTFWFTVP 832


>gi|254285902|ref|ZP_04960864.1| osmolarity sensor protein EnvZ [Vibrio cholerae AM-19226]
 gi|150424084|gb|EDN16023.1| osmolarity sensor protein EnvZ [Vibrio cholerae AM-19226]
          Length = 438

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 65/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124
           +++           L  +       E    V    ++               + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAELAPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|317129750|ref|YP_004096032.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474698|gb|ADU31301.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 457

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIR 54
           +AK I    +S+     L     S + H++ +P+  + + LE + +       E +    
Sbjct: 222 LAKGINELAASLKEGERLRKQFTSDLAHELRTPLTTLRSQLESIQDGIFYPTKERLDQCH 281

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
              M  +  +  M                     +++  L D  Q +     ++ +++V 
Sbjct: 282 HELMRLVRLVNEMEELHAAENPRIRLNLEQHNAKETIHSLYDRFQPMFKQKGINLKIKVD 341

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              +         +I+ NL   A       G+V + V+        S+K NG      E 
Sbjct: 342 EDIQIRADRDRFIQIMTNLLNNALKFTESSGEVQVLVEQIGEGVYISVKDNGIGMTEEEL 401

Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              F +   G            I    V  L   ++  +  +        ++  
Sbjct: 402 NHIFERFYRGEKSRNRKTGGLGIGLSIVKALMDAHRGEIYVDSKKGRGTTVTIF 455


>gi|269967966|ref|ZP_06182005.1| sensor histidine kinase [Vibrio alginolyticus 40B]
 gi|269827402|gb|EEZ81697.1| sensor histidine kinase [Vibrio alginolyticus 40B]
          Length = 811

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      +S +      + + H+I +P+  +  + ++L +  + DE  + +R    S 
Sbjct: 344 LEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDEQRKHLRTLYDSG 403

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +     Y+      +   +    IE  I   K V  +                 
Sbjct: 404 DHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLRFRVVSHLPT 463

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
                +      ++L NL   A     RG            +  + I  +K  G      
Sbjct: 464 GRWYNNDKARLRQVLFNLLNNAVKFTDRGIVEVELAEQSSKAGTKLILKVKDTGIGI-SK 522

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   +I                   +    V  +A     +++ E  +D     +  +
Sbjct: 523 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAGTTFTVEI 580


>gi|114767141|ref|ZP_01446021.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Pelagibaca bermudensis HTCC2601]
 gi|114540703|gb|EAU43771.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius sp. HTCC2601]
          Length = 567

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +A        S  L AL  + + + H++  P+ A+   L     LL     +        
Sbjct: 328 LASAEQTLEQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRPDEAMTAFHR 387

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSW 104
           +  LI            + R        VD    L     ++E  +   +    ++    
Sbjct: 388 IDDLIERMGAITRQLKSYARKGQEQLSPVDMAEALASSLSMMEPQLKARRVRISKILPDE 447

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
               +       ++L+NL   A  +     +  + +   S      S++ NG+     E 
Sbjct: 448 PVRVMGDRMRIEQVLVNLLRNAIDATKSVAQPELEIILASGETATLSVRDNGHGI---ED 504

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +    D   +       +  +   RL      D   V    L 
Sbjct: 505 MDALFEPFYTTKQPGDGTGLGLAISSGIVADLGGRLTARNGVDGGAVFEMQLP 557


>gi|94264421|ref|ZP_01288211.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455178|gb|EAT05396.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 439

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 70/240 (29%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
           + +     + S  + A+  L + + H+I +    + +++++L     ++           
Sbjct: 186 LRETQAQLIQSEKMAAMGQLVAGLAHEINNATNIVLSAVQMLRHHLRQEPPKGLRSNDEA 245

Query: 50  ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRV 100
              ++++    +     +K +          +  + L +         +   F A    +
Sbjct: 246 SSLLKMVEDGGLRTARIVKDLMTFARPAAVDNCRLLLLNQGLRSTIGLLEYHFAAEGMEL 305

Query: 101 QVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            V     +  L        ++ LNL + A  ++   G V +           ++  +G  
Sbjct: 306 LVELDSRQPYLHGNGDELNQVWLNLILNAIQAVDGAGTVQVGTGHDAERVYVTVSDSGPG 365

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    I +    +        +       + + +   +      +   V    L +
Sbjct: 366 IDPT-IRADIFNPFFTTKRPGQGTGLGLTVSYQVINSHGGSIELLDSPEGGAVFRVTLPR 424


>gi|84516567|ref|ZP_01003926.1| hypothetical protein SKA53_08146 [Loktanella vestfoldensis SKA53]
 gi|84509603|gb|EAQ06061.1| hypothetical protein SKA53_08146 [Loktanella vestfoldensis SKA53]
          Length = 720

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 18/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           +  + + H+I +P+  I  + +LL    ++    + +     S  + L  +     Y+  
Sbjct: 225 MFLATMSHEIRTPLNGIIGAADLLRTEDLDPAQSRRVLTIWRSGHVLLDIINDILDYSNL 284

Query: 77  V----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123
                       SL  +  +   +      D  +        I +  +     +ILLNL 
Sbjct: 285 DANGVTFNNAPVSLPDVAGLVHDVFQARIADAGLSFDIDLPAITIMTDEIRLRQILLNLV 344

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTIDS 178
             A    P G      +  +++     ++ +G      +      D     G+       
Sbjct: 345 SNAIKFTPAGSVSVRGMLLAQDGLRIEVQDSGIGIASEDHSKLFRDFSQIEGSESRPFGG 404

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +      R+  E       V    L 
Sbjct: 405 TGLGLAICRRVVTGMGGRIGVESAIGRGSVFWVELP 440


>gi|226946292|ref|YP_002801365.1| Sensory histidine protein kinase CbrA [Azotobacter vinelandii DJ]
 gi|226721219|gb|ACO80390.1| Sensory histidine protein kinase CbrA [Azotobacter vinelandii DJ]
          Length = 981

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 66/232 (28%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54
                 S  L ++  L + + H+I +PI  I    + L E   +D  +           +
Sbjct: 743 ENKLAHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEHEDDAELGEISSQIIDQTK 802

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             +      + F                D       +  +  +   V            +
Sbjct: 803 RVTRIVRSLMSFAHAGSHTQASEAVCLADIAREAIGLLSLNREGTEVSFLNLCDPGHCVV 862

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +   ++L+NL   A  + P GG + +  +  +      ++  G+         ++ D
Sbjct: 863 GDPQRLVQVLVNLLSNARDASPPGGVIRVRSEAVEQSIDLIVEDEGSGI-PKAIAGRLFD 921

Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +        +    V  +  E+  R+  +   D        +   L +
Sbjct: 922 PFFTTKDPGKGTGLGLALVYSIVEEHYGRIAVDSPADPERQRGTRIRVTLPR 973


>gi|197124829|ref|YP_002136780.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196174678|gb|ACG75651.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 589

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
           +         +  L A+  L + + H++ +P+ A+    ++L E          + E ++
Sbjct: 322 LRSMQAAAEHAERLAAIGRLVAGVVHELNNPLTAVTMYSDVLLERFTARAQDPSDVEKLR 381

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
            I+ +        + +      TG+    + L    +                  R    
Sbjct: 382 AIKDAGQRIQRLARDLITYARPTGARTEAVDLVPAVEEAGRMAKTALKESGAALVRDGGE 441

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +++L L   A  ++P G +V +++     E + ++   G     PE 
Sbjct: 442 GPYVVEGNRPSLVQVVLALVTNAAQAVPPGAEVRVALSREGGEVVLTVADAGAGM-PPEV 500

Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +    +       +    V  +   +   +           ++  L 
Sbjct: 501 AARAFEPFFTTRAGVGIGLGLPIVQGIVERHGGSVSLSTAAGRGTTVTVRLP 552


>gi|146280453|ref|YP_001170606.1| hypothetical protein PST_0056 [Pseudomonas stutzeri A1501]
 gi|145568658|gb|ABP77764.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 1012

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 24/237 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
            + ++I        + + L S + H++ +P+ +I  +L L+           ++Q++ ++ 
Sbjct: 768  LVRDITERKRIERMKSELVSIVSHELRTPLTSISGALGLIVGGALGEPSPTMLQMLTIAH 827

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111
             +++   + +         V   + L      +   + +       +  +          
Sbjct: 828  QNSLRLGRLVDDLLDMDKLVAGKMTLQLHGHSLVRQMQLATEANQGYAAKHGVYLQLEPL 887

Query: 112  --------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                         ++L NL   A    P GG V++  Q         ++  G     PE 
Sbjct: 888  PTLQLIADDDRLQQVLANLISNAVKFSPEGGTVSLGAQQRGAWVRIWVRDQGPGI-APEF 946

Query: 164  FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I                   +       L      R+  +    H       L 
Sbjct: 947  HARIFQKFSQADSSDTRQKGGTGLGLAISKELIEHMHGRIGFDSEPGHGACFWCELP 1003


>gi|138895847|ref|YP_001126300.1| two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248739|ref|ZP_03147439.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
 gi|134267360|gb|ABO67555.1| Two-component sensor histidine kinase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211615|gb|EDY06374.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           G11MC16]
          Length = 598

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 360 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 415

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVS 103
                       L   R+  G+       + L    +        + ++           
Sbjct: 416 ESLRMGRLVNDLLDLARMEAGHIELQYEQVELVPYVERVIRKFYGLAKEKQIELTAEFRD 475

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E         ++L NL   A      GG V + ++ S +     ++ +G+     + 
Sbjct: 476 ENIEIAFDPDRIEQVLTNLIDNAIRHTEAGGTVRLIIERSGDGVTIHVQDSGSGIPEEDL 535

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +   +K R+      +     S  L 
Sbjct: 536 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVETHKGRITVHSKLNEGTTFSFYLP 591


>gi|323497303|ref|ZP_08102322.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sinaloensis
           DSM 21326]
 gi|323317660|gb|EGA70652.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sinaloensis
           DSM 21326]
          Length = 851

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 62/223 (27%), Gaps = 24/223 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A   +++ H++ +P+  I    +LL     E + ++ + +   S    L  +     ++ 
Sbjct: 476 ADFLAKMSHELRTPLNGILGVSQLLKHSLDERDALEHVEVLCNSGEHLLAVLNDILDFSK 535

Query: 76  SVDSLIGLGDIEQ----------------VIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  +   E                  IE  I +D +  V+             +IL
Sbjct: 536 IEQGKFHIQCAEFRLIELETTVEKIFRPLCIEKGINLDMQSDVTEKMWANSDQVRLNQIL 595

Query: 120 LNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----N 171
            NL   A      G          QD + +   S+   G      +  T           
Sbjct: 596 FNLVSNAIKFTHHGHVTVSLSCYPQDGRYQLRMSVTDTGIGISDAQLATIFEPFIQAEAT 655

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  LA      +  E   D    +SA L 
Sbjct: 656 TTREYGGSGLGLAIVHSLAELMNGEVTIESQLDKGTRISATLP 698


>gi|283853302|ref|ZP_06370551.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571283|gb|EFC19294.1| GAF sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 575

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 59/243 (24%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           A  +     + +  +       + + H+I +P+  I   ++L+D   +++   + +  + 
Sbjct: 183 AAELAIQKEAAEQASRAKTEFLANMSHEIRTPLNGIFGMIQLIDNSNLDEYQKEYLVAAK 242

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQ 101
            S       +      +        L +    + D                       + 
Sbjct: 243 HSCKRLTSLLSHILDLSSIESGKFSLRENTFSLSDIKESVRELFAIESARKKLLFQFNLD 302

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGN 156
           +      I       +IL NL   A                          +F+++ +G 
Sbjct: 303 LRLPSRVIGDEARVLQILFNLAGNAIKFTESGSVRIDACELPRHDPDACRVLFTIEDSGI 362

Query: 157 LARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                 +           G  +       +    V  L       L  + ++        
Sbjct: 363 GIPDQLQKEIFDPFVQAEGAYKRRFQGAGLGLAIVRKLVRLLGGTLAVDSVEGEGTTFYL 422

Query: 212 LLE 214
            L 
Sbjct: 423 SLP 425


>gi|228914131|ref|ZP_04077750.1| hypothetical protein bthur0012_13660 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228845512|gb|EEM90544.1| hypothetical protein bthur0012_13660 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 420

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSSSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|227541019|ref|ZP_03971068.1| sensory transduction histidine kinase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227183279|gb|EEI64251.1| sensory transduction histidine kinase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 461

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 17/229 (7%), Positives = 54/229 (23%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           +  ++  +      +        H++ +P+ ++    EL         +  + ++   + 
Sbjct: 228 LQDSLQKSHRQEKEMRQFVGDASHELRTPLTSLKGFAELYKTGATDDADWVLSKIQEEAG 287

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDL 111
               +    + L       +D                +   +   +  V  S     +  
Sbjct: 288 RMTTLVEDLLALTRAEGNPLDKQKVDLMEVIESLGTSLRVAYPDREITVGESEPLYVLAD 347

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  ++  NL +           V++       + I  ++ NG      +         
Sbjct: 348 EEKIRRVFTNLMVNGLVHGG--KDVSVLPTADDTDVIIDVRDNGQGMAPEDLEHIFDRFY 405

Query: 172 VE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +       L   +   L            +  L +
Sbjct: 406 RTDESRSRQSGGSGLGLSIAKSLVEAHGGSLSVTSTKGVGSTFTVRLPR 454


>gi|255283554|ref|ZP_05348109.1| two-component sensor histidine kinase [Bryantella formatexigens DSM
           14469]
 gi|255265816|gb|EET59021.1| two-component sensor histidine kinase [Bryantella formatexigens DSM
           14469]
          Length = 357

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 58/208 (27%), Gaps = 17/208 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H+  +P+ +I     LL E  +  E  +       +   RL  +        ++++   
Sbjct: 148 SHEFKTPLTSISGFAHLLLERDLPKEQREKYLQIIANEADRLTELTKNQLLLSNLETQQL 207

Query: 83  LG-------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLFMVAHA 128
                           +  +       +  V V  +      ++E  + +  NL   A  
Sbjct: 208 PPDKEPYSLDEQIRTCVICLYPQCQEKNIDVSVELSPMTYYGNQELMQHVWQNLIGNAVK 267

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST---IDSHDIQFYY 185
             P  G++TIS +++ +    S+   G      E                     +    
Sbjct: 268 YTPEHGRITISSKETDSVYEISVSDTGIGMTEEEIQKIFQKYYQVKKEKSSKGLGLGLPI 327

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALL 213
              +      R+    I     V +  L
Sbjct: 328 AARIVELYNGRISVSSIPGKGTVFTVFL 355


>gi|218708220|ref|YP_002415841.1| osmolarity sensor protein [Vibrio splendidus LGP32]
 gi|218321239|emb|CAV17189.1| Osmolarity sensor protein envZ [Vibrio splendidus LGP32]
          Length = 431

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 66/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLFMVAHA 128
               +     +  +       E    V     +  T +          + + NL + A  
Sbjct: 280 VDRDSFQAVFVDDIAREVSSSEGGYEVQIETDIPETMKPALGNPIAMKRAVSNLVVNALR 339

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 KV+  +         +++ NG      +    F     G+     +   +    
Sbjct: 340 YGNGWVKVSTGMTADNKLAWVTVEDNGPGIPQDQIGKLFEPFTRGDTARGSEGTGLGLAI 399

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  +++  ++     +  +       
Sbjct: 400 VKRIVSQHQGAVVVNNRSEGGLKAQISFP 428


>gi|163783058|ref|ZP_02178053.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881738|gb|EDP75247.1| histidine kinase sensor protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 339

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 72/213 (33%), Gaps = 9/213 (4%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66
             +  V  L   I H I +P+  I  +LE L++      E EV++    +    + +L F
Sbjct: 126 QKLSSVGFLALGIAHQINTPLSTILLALEELEDKLGTSEETEVIRSAVNTCKDYVDKLLF 185

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDLSRERAKILLNLF 123
           +         VD    + D  ++++ +        R+ +   G  +    +   ++LNL 
Sbjct: 186 LVKRSSVKDFVDINKAVKDSVELLKMYAKERGVEIRLHLKGDGYILGNESDIRHLVLNLV 245

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDI 181
           + A    P G  V +  +  +N  +  ++  G      E   +I     +  S  +   +
Sbjct: 246 INALQVSPYGESVEVVSEVGENAWMLRVEDRGPGIEPDELS-KIFIPFYQGKSKSEGAGL 304

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  E    +               + 
Sbjct: 305 GLAIVDSILREYGGSINVRSTPGEGSTFELSIP 337


>gi|153871596|ref|ZP_02000728.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
 gi|152071937|gb|EDN69271.1| response regulator receiver modulated metal dependent
           phosphohydrolase [Beggiatoa sp. PS]
          Length = 565

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 25/216 (11%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-----------RLKFMRLAF 71
            HD+ +P+G I    ++L E  +E    + +   +                       + 
Sbjct: 324 AHDLRNPLGVILGYGQMLQEEALEILDEEQLDYLNRIHNASQFTLNLVNNLLDVAKIESG 383

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------AKILLNLFM 124
                ++    +  I + I     + +  Q+       +   E         +++ NL  
Sbjct: 384 NLALELEQTCLMRTITEAISLNRFLAESKQIQLNFNYDENLPEMTVDASKIQQVINNLIS 443

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------DS 178
            A        KV I     +N+ + S+   G      E   ++     ++++       S
Sbjct: 444 NAIKYSHPQTKVQIHATRKQNDVLISVTDEGQGIPKSEL-DKLFQPFSKTSVKSTAGESS 502

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +  ++  E           LL 
Sbjct: 503 TGLGLLICRQIVEAHSGKIWVESEVGVGSTFYVLLP 538


>gi|86146552|ref|ZP_01064874.1| osmolarity sensor protein [Vibrio sp. MED222]
 gi|85835609|gb|EAQ53745.1| osmolarity sensor protein [Vibrio sp. MED222]
          Length = 397

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 66/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 186 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 245

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-DLSRERAKILLNLFMVAHA 128
               +     +  +       E    V     +  T +          + + NL + A  
Sbjct: 246 VDRDSFQAVFVDDIAREVSSSEGGYEVQIETDIPETMKPALGNPIAMKRAVSNLVVNALR 305

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 KV+  +         +++ NG      +    F     G+     +   +    
Sbjct: 306 YGNGWVKVSTGMTADNKLAWVTVEDNGPGIPQDQIGKLFEPFTRGDTARGSEGTGLGLAI 365

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  +++  ++     +  +       
Sbjct: 366 VKRIVSQHQGAVVVNNRSEGGLKAQISFP 394


>gi|323703412|ref|ZP_08115060.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531593|gb|EGB21484.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 518

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 79/229 (34%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52
            K +   L  S  L AL  L + + H++ +P+G +  ++++++        GIE+    +
Sbjct: 273 KKRLEEELRRSERLAALGRLVTGVAHELRNPLGIVKATVQVMEGEYKKTVPGIEEYTKVI 332

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----- 107
               +    +  + +         V      G ++ V+     + ++ ++    E     
Sbjct: 333 CEQINRGNKVIQELLDFGRPSKPIVRPTDLNGLLDSVLTFTHPMLRQNKIDLNKELAPDL 392

Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +    ++ +NL + A  ++P GGK+TI      ++        G      +   
Sbjct: 393 PLAAIDADRIKQVFVNLILNAIQAMPGGGKLTIKTLAENDKVKVCFSDTGGGINPDDLP- 451

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +  +   +       + H +  ++           +   L 
Sbjct: 452 RIFDPFYTTKDEGAGLGLSISYQIIHMHNGKIWVAETSPSGTTICISLP 500


>gi|293610527|ref|ZP_06692827.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826871|gb|EFF85236.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123909|gb|ADY83432.1| two-component sensor [Acinetobacter calcoaceticus PHEA-2]
          Length = 452

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78
            I H++ +P+  +   +E   D+  I     +               +      +   + 
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L  +  ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445


>gi|258592528|emb|CBE68837.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 781

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 65/244 (26%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            K +   L  +  + A+  L   + HD  + +  I     LL           +  Q+I 
Sbjct: 390 QKRLEAQLRQAQKMEAIGTLAGGVAHDFNNLLTPILGYSRLLKLRGQPGEDVYQAAQVIE 449

Query: 55  LSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +           L F R        VD      ++  ++   I     +      E+  
Sbjct: 450 GAGERCAQLANRLLGFARGGKHQEMPVDLHTAAREVVDLLSRTIDKRITITQRLCVEQAV 509

Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQ---------------DSKNENIFSLK 152
                 +  +++LNL + A  ++P GG +                       +  + S+ 
Sbjct: 510 ALGDPSQIQQVILNLAVNARDAMPHGGNLHFETDVVTLDNDYCRRNLGATVGDYVMLSVT 569

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      E   ++ +    +        +    V  +   +   +     +       
Sbjct: 570 DTGMGI-PQEIQGRVFEPFFTTKEPGKGSGMGLAMVYGIVKNHGGTIRVYSEEGSGTSFK 628

Query: 211 ALLE 214
               
Sbjct: 629 VYWP 632


>gi|229168357|ref|ZP_04296082.1| hypothetical protein bcere0007_33140 [Bacillus cereus AH621]
 gi|228615183|gb|EEK72283.1| hypothetical protein bcere0007_33140 [Bacillus cereus AH621]
          Length = 516

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       + +    + ++   ++   +     + +       D+
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAVMHSVHIIMDHFDYISDI 400

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQI 167
             +  ++   L  +   ++            +     +     +   G      E+  ++
Sbjct: 401 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTASLENDFVSIRIMDEGCGI-PEERMARL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 506


>gi|220903844|ref|YP_002479156.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868143|gb|ACL48478.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 669

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 57/215 (26%), Gaps = 20/215 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69
             + + H++ +P+ AI    E L  +    E  +   +   +     + +          
Sbjct: 449 FVANVSHELRTPLTAIQGYAETLTSLDGPPECRRFGEIILKNGACLSRMVDDLLTLARLE 508

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                     T   ++L     + + + +         +S     +       ++  NL 
Sbjct: 509 GKSGSLELAPTDPREALAQATGMCREVLEHRRCRVESHLSADCRVMASLPHLTQVFRNLL 568

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD 180
             A    P GG + ++ +   +   F +  +G      +    F +           S  
Sbjct: 569 ENAGRYAPEGGSIRVTARQVGDSVAFRIADDGPGIPRQDLERIFERFYQVERHRGQASTG 628

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVV---LSAL 212
           +       +   +   +  E            +  
Sbjct: 629 LGLAICKHIIERHGGSIRAESPATDGSTALVFTLT 663


>gi|182434881|ref|YP_001822600.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178463397|dbj|BAG17917.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 682

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 53/234 (22%), Gaps = 24/234 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLS 56
                 L        + S + H++ +P+  I   LE   +   + +       ++   L 
Sbjct: 444 SAHRARLEEQRKA--MVSDVAHELRTPLSNIRGWLEAAQDGLADPDPAFVSSLLEEAVLL 501

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEK 108
                          G        +   ++   +                    +     
Sbjct: 502 QHIIDDLQDLAAADAGVLRLHPEPVEARELLGQVAAAHQARAENAGVTLTVAGAAPGPAL 561

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE--- 162
                   + + NL   A    P GG+VT+     +      +  +   G+     +   
Sbjct: 562 RADPVRLRQAVGNLVSNAVRHTPEGGRVTLRAYACEEEAGTVLVEVADTGSGIPAEDLPH 621

Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +      +         +    V  L   +   +    +          L 
Sbjct: 622 VFDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTVDAASVAGEGSTFVLRLP 675


>gi|170760225|ref|YP_001785596.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407214|gb|ACA55625.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 417

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +P+  I   LE + +      +E ++ I 
Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPLTTIQAQLEAIMDGLWEPSEERLKSIY 236

Query: 55  LSSMSAIIR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                              +  +L    +      +    +    +  +  D  +QV   
Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVELEAVITTILTNFEKQLLDKDINLQVDLK 296

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + +++  ++++N+   A    P  G++ +      +    S+K +G      +  
Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGVGISDEDKD 356

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411


>gi|218896487|ref|YP_002444898.1| sporulation kinase [Bacillus cereus G9842]
 gi|228900137|ref|ZP_04064370.1| hypothetical protein bthur0014_13440 [Bacillus thuringiensis IBL
           4222]
 gi|218544901|gb|ACK97295.1| sporulation kinase [Bacillus cereus G9842]
 gi|228859543|gb|EEN03970.1| hypothetical protein bthur0014_13440 [Bacillus thuringiensis IBL
           4222]
          Length = 421

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKSLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLCDYIQQLLASEVFLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGIGIPLA-IQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSDPD-GTTFTISIP 409


>gi|188579941|ref|YP_001923386.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
 gi|179343439|gb|ACB78851.1| multi-sensor signal transduction histidine kinase [Methylobacterium
           populi BJ001]
          Length = 643

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
           + +       + ++     + + H++ +P+ AI    ++L   G      +   +   + 
Sbjct: 337 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLSGEGAVSLSPERSREYAGII 396

Query: 57  SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + S    L  +                    VD    +     ++           VS  
Sbjct: 397 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRSCCDLMRLKADASGIALVSAP 456

Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   ++L+NL   A    PRGG+V + V+         +  NG      
Sbjct: 457 VPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDVVVSDNGIGITEA 516

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++ D   +       + +   +    V  LA  +   +  E        ++  L 
Sbjct: 517 DLP-RLGDPFFQAGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 574


>gi|153809580|ref|ZP_01962248.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
 gi|149127783|gb|EDM19007.1| hypothetical protein BACCAC_03898 [Bacteroides caccae ATCC 43185]
          Length = 917

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           MA+ +       +L   L     + + H+I +P+ AI     L+   D+   + E M++I
Sbjct: 532 MAQELKILKDKAELSDRLKSAFLANMSHEIRTPLNAIVGFSGLMVNCDDPEEKAEYMEII 591

Query: 54  RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             ++   +  +             +               L  + Q       V+  +  
Sbjct: 592 ESNNDLLLRLINDILDLSKIESGILERKREKFNLAKVSGELYTMIQPKITNPEVEFILGN 651

Query: 103 SWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           S     I        ++ +N    A      G        ++       ++ +G      
Sbjct: 652 SGPDCWIFLDRNRLKQVWMNFLTNAVKCTHSGHIKMGYSLENGG-IKVYVEDSGVGI-PY 709

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++               +       +       +             A + 
Sbjct: 710 EVQNRVFGRFQKLNEFAQGTGLGLAISRAIIEGAGGEIGFTSTPGVGSTFWAWIP 764


>gi|21674217|ref|NP_662282.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
 gi|21647382|gb|AAM72624.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
          Length = 808

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           +++   +  M+LV  L   I HD  + +G I  + EL       +  ++           
Sbjct: 428 QSVLLQIQKMELVGQLAGGIAHDFNNMLGVILGNAELALSSDDLEASVEENLQEIYRAAE 487

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDL 111
            S+      L F R        V     + D   +++        +++            
Sbjct: 488 RSAEMISQLLAFARKQTAMPKLVHINEVVQDSLPILQRVAGEKIEIELRPCGDDCRLHID 547

Query: 112 SRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156
             +  +IL+NL + A  ++                     +   +   +  + S+   G 
Sbjct: 548 PSQIDQILMNLCLNARDAMNGTGKIVIEVKRINIAPSQYSSGDFRLPGDFIMLSVTDTGQ 607

Query: 157 LARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 K   I +    +        +    V  +  +N+  +  E            L 
Sbjct: 608 GIADIHKS-HIFEPFFTTKAQGKGTGLGLSSVYGIVKQNRGFVDFESNVGVGTTFHIYLP 666


>gi|329121387|ref|ZP_08250012.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus
           DSM 19965]
 gi|327469677|gb|EGF15144.1| PAS/PAC sensor sensor histidine kinase [Dialister micraerophilus
           DSM 19965]
          Length = 650

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 16/225 (7%), Positives = 58/225 (25%), Gaps = 21/225 (9%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK 65
           +  +     + + H++ +P+  I    E++      +          I   S   +  + 
Sbjct: 343 AEKMRREFSANVSHELKTPLTTISGFAEMIAKGMCKDTEDIKNFSNKIHQESRRMLSLID 402

Query: 66  FMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            +             +  + S+  +      +    A  K ++++   E + +    A +
Sbjct: 403 TIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKDLKINLDIEPVYMYGNAALL 462

Query: 119 LLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGN 171
                 +   ++              +  +     ++   G           F +     
Sbjct: 463 SELFMNLLDNAVKYNVEGGNITVHIKRVKEKLMKITISDTGVGIPEEKQNRVFERFFRVE 522

Query: 172 VEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +   +  ++    I+     ++A L 
Sbjct: 523 ESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTTVTAELP 567


>gi|228925530|ref|ZP_04088620.1| hypothetical protein bthur0010_2580 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931775|ref|ZP_04094673.1| hypothetical protein bthur0009_2620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944082|ref|ZP_04106462.1| hypothetical protein bthur0007_2590 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229119932|ref|ZP_04249188.1| hypothetical protein bcere0016_2520 [Bacillus cereus 95/8201]
 gi|228663525|gb|EEL19109.1| hypothetical protein bcere0016_2520 [Bacillus cereus 95/8201]
 gi|228815595|gb|EEM61836.1| hypothetical protein bthur0007_2590 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827889|gb|EEM73625.1| hypothetical protein bthur0009_2620 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834131|gb|EEM79678.1| hypothetical protein bthur0010_2580 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 314

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 72  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L D    I       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E I          + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 308


>gi|218289691|ref|ZP_03493899.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
 gi|218240148|gb|EED07332.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius LAA1]
          Length = 429

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 59/224 (26%), Gaps = 20/224 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM 67
             + +   + + H++ +PI AI    E L +        ++ ++ I   S+     +  +
Sbjct: 201 ERMRSDFVANVSHELKTPIAAIRGFAETLLDGDVDEEAREKFLRTIYEESLRMGNLVSDL 260

Query: 68  --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERA 116
                     +     +VD    L      +            +                
Sbjct: 261 LELSKLEASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRLHVWAEPDLLL 320

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIV--DGN 171
           ++ LNL   A    P   +V ++     +     +K NG        P  F +      +
Sbjct: 321 QVFLNLLTNAIHYSPPKSRVCVTWDVLVDRVKVHVKDNGIGIPKESLPRVFERFYRVHKD 380

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +    V  +       +  E  +         L +
Sbjct: 381 RSRASGGTGLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTLSR 424


>gi|162449087|ref|YP_001611454.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161159669|emb|CAN90974.1| two-component hybrid histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 859

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           +++     L +  + A+  L + + H++ +P+ AI  + +LL     +   +        
Sbjct: 612 LSEAQQELLQAGKMAAIGTLVAGLSHEMNNPVSAILMNAQLLLRRHRKGHGLPDEASLLK 671

Query: 51  ------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVS 103
                 +     S      L++ R         D    L     +           ++  
Sbjct: 672 ALGTIERQAIRCSDLVTALLEYARGKPIGREPCDVRAALRRAVDLSAPRARERRVHLETD 731

Query: 104 WT----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKING 155
                  E +  + +    LLN+   A  + P G  V +  +       +     +  +G
Sbjct: 732 GNSSALPEVLVNASQLESALLNVIGNALDASPHGSAVVVEARPRPRGDIHGVEIDVHDHG 791

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              R  +   +I +    +        +          E++  +  E        +   L
Sbjct: 792 CGIRAEDLS-RIFEPFFTTKPPGQGTGLGLSLTHRFIEEHQGSIRIESAPGEGTTVRMWL 850

Query: 214 E 214
            
Sbjct: 851 P 851



 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 23/217 (10%)

Query: 22  ICHDIISPIGAIHNSLELL---DEVGIEDE---VMQLIRLSSMSAIIRLKF--------M 67
           + H++ +P+  I   LE L    +  +       ++LI+ S       +           
Sbjct: 199 MSHELRTPLSLILGPLESLLSSRDEPLSPRVRADLELIQRSGRRLRRLVDDVLDHQKIEA 258

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRER-AKILLNLF 123
                   +VD    + D+ +      A       ++V     ++   R +  KI LNL 
Sbjct: 259 GKMQIDWEAVDVGELVSDMVEEARPAAARGGLDLSIRVDPELRRVPADRRKLEKIALNLL 318

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNV--ESTIDS 178
             A    P GG+VT+ ++        S++  G       +     +    +       + 
Sbjct: 319 GNALKFTPPGGRVTVDLRALDGLFELSVEDTGPGIPADRRHLLFQRFQQIDASATRKHEG 378

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I       L       +  E            L +
Sbjct: 379 TGIGLSLAKELTELMGGAVGVESEPGVGSRFFVRLPR 415


>gi|163797110|ref|ZP_02191065.1| ATP-dependent protease peptidase subunit [alpha proteobacterium
           BAL199]
 gi|159177626|gb|EDP62179.1| ATP-dependent protease peptidase subunit [alpha proteobacterium
           BAL199]
          Length = 507

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/248 (8%), Positives = 62/248 (25%), Gaps = 43/248 (17%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +     +          + + H++ +P+  +   +E L     D+    D  ++++R+ 
Sbjct: 254 RRTEQMRVD-------FVANVSHELRTPLATLLGFIETLQGPARDDAEARDRFLEIMRVQ 306

Query: 57  SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                  ++ +                      +       +  +    D RV +     
Sbjct: 307 GNRMSRLVQDLLSLSRIEISEHKPPSERIDLEPMLNSVKATLDLEARRKDMRVGLEVDAT 366

Query: 108 KIDLS---RERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLK 152
              +     E  +++ NL   A                      +     S      +++
Sbjct: 367 LPQVVGAADELTQVVQNLLDNAIKYGKPGTEITVAARRADRVPASYPGGPSGKAVAIAVR 426

Query: 153 INGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             G+     E   ++ +            +    +    V  +   ++  L         
Sbjct: 427 DRGDGI-PAEHIPRLTERFYRVDAARSRDLGGTGLGLAIVKHIVSRHRGTLTIHSTPGEG 485

Query: 207 VVLSALLE 214
            V +  + 
Sbjct: 486 SVFTVYVP 493


>gi|153825540|ref|ZP_01978207.1| osmolarity sensor protein EnvZ [Vibrio cholerae MZO-2]
 gi|229513634|ref|ZP_04403098.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae TMA 21]
 gi|149740825|gb|EDM54916.1| osmolarity sensor protein EnvZ [Vibrio cholerae MZO-2]
 gi|229349511|gb|EEO14467.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae TMA 21]
          Length = 438

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 65/213 (30%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFM 124
           +++           L  +       E    V    ++               + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAELAPAFGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|107102995|ref|ZP_01366913.1| hypothetical protein PaerPA_01004064 [Pseudomonas aeruginosa PACS2]
          Length = 918

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 55/238 (23%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +         +  +   +++ H+I +P+  +   L+LL +  ++      +   + S  
Sbjct: 395 RQAAEQARVENEAKSRFLAKMSHEIRTPLNGVLGMLQLLRDTPLDRGQAAYVETIASSGS 454

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
             +  +     Y               D    L D   +        +            
Sbjct: 455 ALMSVINDILDYARIESGKLHLERIDFDLEELLSDTLALFSAQAVEKRLRLHLGLDRGVP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L+NL   A      G       +          ++S+  +G      
Sbjct: 515 RRLNGDPTRLRQVLMNLLSNALKFTAEGHVAVRVQRRFDEGGRERLLYSVSDSGIGISAQ 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + T     +              +       L      R+            S  L 
Sbjct: 575 AQKTLFESFSQADSSTTRRYGGSGLGLAISRELVQMMGGRIEVSSEPGKGTQFSVDLP 632


>gi|75907937|ref|YP_322233.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75701662|gb|ABA21338.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 628

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 60/240 (25%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + +     +  ++  + +     + + H++ SP+  I     LL    +  E ++    S
Sbjct: 236 LERERAARIE-LERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSPEKIEQALES 294

Query: 57  SMSAII---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                                +       V     +  I+  ++    +     +     
Sbjct: 295 IERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISR 354

Query: 108 KIDL-------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           +++ NL   A    P GG+V I ++  +      +   G     
Sbjct: 355 LNFDIGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETNVQIRVTDTGKGISP 414

Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                 F +    +           +    V  L   +   +      +      +  L 
Sbjct: 415 EFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGTVSVASPGEGQGATFTVQLP 474


>gi|30260459|ref|NP_842836.1| sensor histidine kinase, putative [Bacillus anthracis str. Ames]
 gi|47777799|ref|YP_016896.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|65317711|ref|ZP_00390670.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|30253780|gb|AAP24322.1| putative sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47551504|gb|AAT29371.2| putative sensor histidine kinase [Bacillus anthracis str. 'Ames
           Ancestor']
          Length = 314

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 72  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L D    I       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E I          + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 308


>gi|228990438|ref|ZP_04150403.1| hypothetical protein bpmyx0001_12000 [Bacillus pseudomycoides DSM
           12442]
 gi|228768964|gb|EEM17562.1| hypothetical protein bpmyx0001_12000 [Bacillus pseudomycoides DSM
           12442]
          Length = 400

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57
           +    N     L+  + + I H++ +P+ +    L+LL      +E  +L      R   
Sbjct: 173 QEELINAEKFHLIGEMAASISHEVRNPLTSTKGFLQLLQSEECSEEDRKLYTEIAIRGIE 232

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++  A         L         +  I  +           + S       
Sbjct: 233 QANHVLTDYLTFAKPSIEKEQVLQIEDELLRAVSLITPLANLTNVRITYTKQSNIFCISG 292

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+      ++P+GG + +++  S  +   ++K  G      E+  ++   
Sbjct: 293 EKQKFNQCLLNILKNCIEAMPKGGDLILTLIPSHTQIQLAIKDTGIGMDL-EQLKRLGSP 351

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++      D          
Sbjct: 352 FYSTKEKGTGLGMMVVFSIVKAMGGKIDISSEKDIGTTFLLTFP 395


>gi|197106264|ref|YP_002131641.1| sensory box histidine kinase FixL [Phenylobacterium zucineum HLK1]
 gi|196479684|gb|ACG79212.1| sensory box histidine kinase FixL [Phenylobacterium zucineum HLK1]
          Length = 498

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 63/241 (26%), Gaps = 30/241 (12%)

Query: 2   AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGA----IHNSLELLDEVGIED 47
            +     L  +         L AL  + S + H++  P+ A    +  S+ LLD+  ++ 
Sbjct: 247 RQATERRLQDLQSELVHVARLTALGEMASALAHELNQPLSAAANYVKGSVRLLDQEPLDK 306

Query: 48  EVM--------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDK 98
             +        +    +         F+               L +   + +        
Sbjct: 307 PKIKDALNLAGEQTLRAGQIIRRLRDFVAKGEAERSLESLPQLLEEAGALAMVGAKERGV 366

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLK 152
           R+    + E   +  ++ +I   +  +   ++                         S+ 
Sbjct: 367 RLSFQISPEVGLVLADKVQIQQVVLNLMRNAIDAMEGSARRELVVSARPVEDEMVEISVA 426

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G     PE    +    + +  +   +       +   +  R+  E       +    
Sbjct: 427 DTGPGV-SPEVADHLFQPFITTKREGMGVGLSISRTIVEAHGGRIWVEPNPKGGAIFRFT 485

Query: 213 L 213
           L
Sbjct: 486 L 486


>gi|149174286|ref|ZP_01852913.1| sensor protein atoS [Planctomyces maris DSM 8797]
 gi|148846831|gb|EDL61167.1| sensor protein atoS [Planctomyces maris DSM 8797]
          Length = 391

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 69/232 (29%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSS 57
           + KN         L AL  L + + H++ +P+  I N+  L   +V  E E  +L+ L  
Sbjct: 158 LEKNRRKM---EKLAALGQLAAGVAHEVNNPLAGIRNAFALFKADVPAEHEHFELLELID 214

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-----------FIAVDKRVQVSWTG 106
                      L +              I+ +IED                ++   +   
Sbjct: 215 REIERISSITHLMYQLYRPSAQCATSFLIDNIIEDVIRLLEPAAGKAQVRVEQEADTGDI 274

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +      E  +ILLNL   A  +   GG V+I V+         +  +G+     E   +
Sbjct: 275 QVTLPEGEVKQILLNLIQNAIQASAPGGTVSIRVRTHSETVKVQVADHGSGI-TEENLPR 333

Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +          +       L       +            +A   
Sbjct: 334 IFDPFFSTKTSTPRQGMGLGLSVSRSLIEAMGGSIDVMSAPGSGTCFTASFP 385


>gi|116626897|ref|YP_829053.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116230059|gb|ABJ88768.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 578

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 71/229 (31%), Gaps = 20/229 (8%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------ 49
                + +  + A   L  R+ H++ +P+  +  ++E +                     
Sbjct: 351 QREKLVQAERVAAWRELARRLAHELKNPLFPLQITVENMQRARDRYPEQFDEVFREGTTT 410

Query: 50  -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +  +            F R+      +VD    + +  ++ E  +A  +  +V     +
Sbjct: 411 LLAELAQLKQIVGRFSDFARMPTPEIQAVDFHALITETLKLFEGQLAQARVREVIELDPR 470

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                    +  ++L NL + A  ++P GG +T+  +         +   G     PE+ 
Sbjct: 471 VGRVNADPEQMTRVLRNLILNAIDAMPEGGTLTVRTKALDGRMRLEISDTGQGL-TPEEC 529

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            ++      +      +    V  +  ++  R+  E            L
Sbjct: 530 DRLFTPYYTTKTHGTGLGLAIVQSVVSDHGGRISVESEKGKGATFRIEL 578


>gi|84387561|ref|ZP_00990579.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
 gi|84377609|gb|EAP94474.1| hypothetical protein V12B01_11270 [Vibrio splendidus 12B01]
          Length = 863

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 63/239 (26%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     +S+    +   + + H+I +P+  I    E+L +  +     +++     S+
Sbjct: 357 LVEAKEDAISANKAKSAFLANMSHEIRTPLNGIIGMAEILSQSQLSANQQEVLGDIESSS 416

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              L                + L+       +++     +         ++  + +    
Sbjct: 417 HSLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDINIDSQT 476

Query: 107 EK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                       ++L NL   A     +G   T       +    +   S+   G     
Sbjct: 477 PPQLFFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKLECSVSDTGIGI-E 535

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           PEK   I +        +        +       L       +    +       +  L
Sbjct: 536 PEKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGEGSTFTFCL 594


>gi|302342756|ref|YP_003807285.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
 gi|301639369|gb|ADK84691.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
          Length = 1224

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 63/243 (25%), Gaps = 31/243 (12%)

Query: 2    AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQ 51
            A+       +  + A+  L   I HD  + +GAI    EL  E             +V++
Sbjct: 839  ARLEAQLRQAQKMEAIGTLAGGIAHDFNNILGAIIGYTELAQELTREGASNADELAQVLR 898

Query: 52   LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                +       L F R        +     +     ++E  +    R++     +   +
Sbjct: 899  SADRARKLVQQILTFSRKVESDRRPLSLNKIVRQSVGMLEHTLPKMIRIETDLAADLRPV 958

Query: 112  SRERAKILLNLFM---VAHASLPRGG---------------KVTISVQDSKNENIFSLKI 153
              +  +I   +      A  ++P GG                            +  +  
Sbjct: 959  CADGNQIEQIILNIAGNAADAMPDGGRLLIETQNAILGEEYCRLHLDARPGQYAMLQISD 1018

Query: 154  NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             G       +  QI D    +        +    V  +  ++   +      D       
Sbjct: 1019 TGRGMDQRTR-EQIFDPFFTTKEVGKGTGLGLAIVYGIVKDHGGHVSCYSEPDLGSTFKI 1077

Query: 212  LLE 214
             L 
Sbjct: 1078 FLP 1080


>gi|296123006|ref|YP_003630784.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015346|gb|ADG68585.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1135

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 63/238 (26%), Gaps = 29/238 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     +     +   + + H+I +P+ AI    EL+ +  ++      +R+   S  
Sbjct: 418 AKDAAEAANRAK--SDFLANMSHEIRTPLNAIIGMTELVMDTDLKVAQRDYLRMVLESGE 475

Query: 62  IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +                          LGD  + + +            V     
Sbjct: 476 SLLGIINDILDFSKIEAGRLHVDEQPFRLRDSLGDTMKSLSNRAHRKKLELAFHVSPDVP 535

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFP 161
            E    +    ++++NL   A     RG         S    +    F ++  G      
Sbjct: 536 DEVRGDAVRVRQVIINLLGNALKFTERGEVVLDVSVESRTAEQVTLHFKVQDTGIGI-AK 594

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +KF  I +                 +       L    + ++  E            L
Sbjct: 595 DKFESIFEAFEQADSSTTRRYGGTGLGLAISARLVELMQGKIWVESEVGQGSTFHFTL 652


>gi|220916345|ref|YP_002491649.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219954199|gb|ACL64583.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 601

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 17/212 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + HD+ +P+ AI+ S  LL   G     ++    +   +  R+  +        S+D+
Sbjct: 390 AIVSHDLKNPLEAIYLSSALLLRSGAA-PRLRRHAETIQRSAARMDRLIRELLDLSSIDA 448

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSW----------------TGEKIDLSRERAKILLNLF 123
              + +      D +  +    +S                             ++L NL 
Sbjct: 449 GRLVVEPRPEPLDAVVEEALAGLSPLALERGIALGADTGGAREPVPCDRERILQVLSNLV 508

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
             A    PRGG VT+    +  E    ++ +G      +            +     +  
Sbjct: 509 GNALQFTPRGGHVTVRATLAPTEARVEVRDDGPGIAPAQLRRVFDRYWKSGSRRGSGLGL 568

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                L   +  R+  E            L +
Sbjct: 569 SIAKGLVEAHGGRIEVESRLGAGSTFRFTLPR 600


>gi|126656705|ref|ZP_01727919.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126621925|gb|EAZ92633.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 398

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 69/253 (27%), Gaps = 38/253 (15%)

Query: 1   MAKNICFNLSSMD------------------LVALLCSRICHDIISPIGAIHNSLELLDE 42
           M K +     +++                  L +   S + HD  +P+  I  S  LL++
Sbjct: 131 MEKQLKEANQALEKRVEERTIQLLKAQELNQLKSEFVSILSHDFRNPLNTILLSTGLLED 190

Query: 43  VGIE---DEVMQLIRLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQ 88
              +   ++ +   ++   +     + +                    ++       I  
Sbjct: 191 SHDQLTREQQLSYFQMIRQAVQDMNQLLSEVLLLGKADSGKLKPNFEKLNLQQFCQQIIH 250

Query: 89  VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKN 145
            +      + ++   + GE  +   +   +   L      A    P+GG +   +   + 
Sbjct: 251 SLHLSFEDENQIIAKFKGEFQEEFWDSKLLWHILHNLLSNALKYSPKGGNILFDIIVDEK 310

Query: 146 ENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII 202
              F ++  G           F      +    I    +    V       +  +  +  
Sbjct: 311 LVTFRIEDQGIGISQTAQKHLFEPFYRADNVENISGTGLGLSIVRKCVEVYQGDIFVDSQ 370

Query: 203 DDHNVVLSALLEK 215
            +     + +L +
Sbjct: 371 LNKGTTFTVILPR 383


>gi|83745642|ref|ZP_00942700.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
 gi|83727719|gb|EAP74839.1| Two component system histidine kinase / Two component response
           regulator [Ralstonia solanacearum UW551]
          Length = 668

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 72/234 (30%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL     ++ + +    +   + 
Sbjct: 280 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 337

Query: 62  I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                     + ++   +G V   I       + +  +   + +A  K++ +        
Sbjct: 338 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYPPVP 397

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG + + VQ S    + +++  G        P  
Sbjct: 398 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQASPEGLVATVRDTGIGIEPTFLPHV 457

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
           F +    +           +       L   +  R+       +    ++  L 
Sbjct: 458 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASNGANLGTTMAVTLP 511


>gi|228990566|ref|ZP_04150531.1| hypothetical protein bpmyx0001_13280 [Bacillus pseudomycoides DSM
           12442]
 gi|228769092|gb|EEM17690.1| hypothetical protein bpmyx0001_13280 [Bacillus pseudomycoides DSM
           12442]
          Length = 417

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 61/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +   + L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKLALAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFQNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLSISKAHEFKREPFPINTFLREYIQQLLASEVFLHNISIEYNLSSDLEDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    + + NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAKSDKPLSIQITSHRLDNFARITFQDNGTGI-PPAIQDYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     ++        + 
Sbjct: 365 DPFFSTKDAGTGLGLSVTRKIIQNHNGTLKVSSNEN-GTTFIISIP 409


>gi|228996667|ref|ZP_04156305.1| hypothetical protein bmyco0003_12530 [Bacillus mycoides Rock3-17]
 gi|229004316|ref|ZP_04162116.1| hypothetical protein bmyco0002_12800 [Bacillus mycoides Rock1-4]
 gi|228756950|gb|EEM06195.1| hypothetical protein bmyco0002_12800 [Bacillus mycoides Rock1-4]
 gi|228763096|gb|EEM12005.1| hypothetical protein bmyco0003_12530 [Bacillus mycoides Rock3-17]
          Length = 417

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 61/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +   + L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKLALAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFQNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKI 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLSISKAHEFKREPFPINTFLREYIQQLLASEVFLHNISIEYNLSSDLEDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    + + NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAKSDKPLSIQITSHRLDNFARITFQDNGTGI-PPAIQDYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     ++        + 
Sbjct: 365 DPFFSTKDAGTGLGLSVTRKIIQNHNGTLKVSSNEN-GTTFIISIP 409


>gi|229068028|ref|ZP_04201337.1| hypothetical protein bcere0025_2450 [Bacillus cereus F65185]
 gi|229077629|ref|ZP_04210260.1| hypothetical protein bcere0023_3330 [Bacillus cereus Rock4-2]
 gi|228705683|gb|EEL58038.1| hypothetical protein bcere0023_3330 [Bacillus cereus Rock4-2]
 gi|228715095|gb|EEL66961.1| hypothetical protein bcere0025_2450 [Bacillus cereus F65185]
          Length = 314

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 65/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + +       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 72  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPD 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++  E    +   G   +  + 
Sbjct: 192 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIQKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E            + K
Sbjct: 252 QNIFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308


>gi|83646938|ref|YP_435373.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634981|gb|ABC30948.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 874

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 61/235 (25%), Gaps = 27/235 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSS 57
                +  M       S + H++ +P+ +I  +L LL               +Q+   +S
Sbjct: 626 TERKRVDRMK--NEFISTVSHELRTPLTSITGALSLLLNGAVGQPTEEFSRFLQIAYKNS 683

Query: 58  MSAIIRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               + +  +                           +       +      K +     
Sbjct: 684 QRLALLINDLLDMEKITAGGVKYSFSVEPVMPLVEQSIDTNRVYGQQHEVEYKIIHREDA 743

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +IL N    A    P+G  V ISVQ  +N    S+   G     PE +T
Sbjct: 744 SLINVDPLRFQQILANFLSNAAKFSPQGCTVDISVQRRENYVRISVTDRGPGI-PPEFYT 802

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I                   +  +    LA   + R+  E            L 
Sbjct: 803 RIFKKFSQADSSDRRQKGGTGLGLFISRELAKGMRGRIDFESEVGKGATFYVELP 857


>gi|269964589|ref|ZP_06178828.1| nitrogen regulation protein rtrB (nitrogen regulator II, NRII),
           sensor kinase [Vibrio alginolyticus 40B]
 gi|269830716|gb|EEZ84936.1| nitrogen regulation protein rtrB (nitrogen regulator II, NRII),
           sensor kinase [Vibrio alginolyticus 40B]
          Length = 365

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+++  E  + +   +    A
Sbjct: 134 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPEPSLTEYTHIIIEQA 192

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 193 DRLRALVDRLLGPQKPGKKTQENLHQILEKVRQLVELESQRSIIIERDYDPSLPEILMDT 252

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  +  K      +  NG     
Sbjct: 253 DQIEQAMLNIVSNAAQILSHQEHGKITIRTRTVHQANIHGKRCKLAARVEITDNGPGI-P 311

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 312 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TTFTIYLP 364


>gi|296123509|ref|YP_003631287.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296015849|gb|ADG69088.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1015

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 67/237 (28%), Gaps = 26/237 (10%)

Query: 5   ICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QL 52
           +      ++L         + + H++ +P+  I N+LE      +  E +        + 
Sbjct: 586 LRQAQQELELADRRKDFFLATLSHELRNPLTPISNALEAWRAADLSPEELTEVREMLSRQ 645

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGE 107
            +         L   R++ G      +++ L +  Q               ++      E
Sbjct: 646 TKQMVRLIDDLLDVSRISGGKIQLKPAILDLRECIQTSIEVAQPLIRQAGHQLTTDLPNE 705

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            + +  +     +I+ NL   A       G++ + V   +++    +  NG         
Sbjct: 706 PVWIKADATRIVQIVANLLNNAAKYTDPQGRIHLQVVPFEHQVEIQVVDNGAGIPAHMLE 765

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
                        +       I    V  LA  +   ++            +  L +
Sbjct: 766 QIFGMFEQVGSSLDRAQGGLGIGLTLVRSLAELHGGSVVAFSEGLGKGSRFTITLPR 822


>gi|218282707|ref|ZP_03488914.1| hypothetical protein EUBIFOR_01500 [Eubacterium biforme DSM 3989]
 gi|218216408|gb|EEC89946.1| hypothetical protein EUBIFOR_01500 [Eubacterium biforme DSM 3989]
          Length = 601

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 77/229 (33%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQLIRLS 56
            I        L A L   I HD+ +P+ +I  +  LL E                +   +
Sbjct: 364 KIEQQAKQEALRADLLRMISHDLRTPLTSISGNAGLLLENENAFSLEKKKELYQDIYNDA 423

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKID 110
                +    + +     G++        IE +  + I        +  + V    + + 
Sbjct: 424 MWLYDLVENLLFITRIENGTMQLNQQPEMIEDIFREAIHHLGRNKRNHNISVRLEDDLLM 483

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            + +     ++L+NL   A    P   K+ +S +  +N+ +  ++ +GN    P++  ++
Sbjct: 484 ANMDARLIIQVLVNLMNNAIKYTPENSKIVLSAKRIENKILIEVQDDGNGVLHPDQLFEM 543

Query: 168 VDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  + D      +       +   +  ++  E ++ H      LL
Sbjct: 544 FYTENNHSGDTRRGMGLGLSLCKSIVLAHGGKIWVENVNPHGACFKFLL 592


>gi|212691328|ref|ZP_03299456.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
 gi|212666081|gb|EEB26653.1| hypothetical protein BACDOR_00820 [Bacteroides dorei DSM 17855]
          Length = 781

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 55/220 (25%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L     + + H+I +P+ AI     L+       +      + + ++ I L+    
Sbjct: 417 QSDRLKTAFLANMSHEIRTPLNAIVGFSRLMTMADNVADEKLYSDIINQNSEILLQLIND 476

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    + ++ +       V        +    +     
Sbjct: 477 ILDLAKIEAGTLEYVRYPMDLGELCRNVYEMHKDRVQTGVVLILDNKDTSLIINEDQNRI 536

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
            +++ NL   A     +G          +    F +K  G      +            +
Sbjct: 537 MQVVTNLITNAIKFTFKGEIRFGFEVRKE-YIDFYVKDTGMGISEEKIKMIFERFVKLNT 595

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +    +  E   +        + 
Sbjct: 596 FVQGTGLGLAICRVIVEKIGGEITAESKLNEGSTFRFTIP 635


>gi|144900011|emb|CAM76875.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 529

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 73/234 (31%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSS 57
           M + +   + +++      + + H+I +P+ ++ +++E    L +   + +++ +I+   
Sbjct: 298 MTEALWARMDAIE---RFAADVAHEIKNPLTSVRSAVETAARLSDPEKQKKLLAIIQDDV 354

Query: 58  MSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 +           +  R           L  L ++ Q   + +     +    T 
Sbjct: 355 ERLNRLITDISDASRVDAEMSRADTEPVPLALLLATLAEVYQNTAETLHFPLDLPADDTL 414

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
               +     ++L NL   A +  P GG + ++          +++ +G      +    
Sbjct: 415 VVDGIEGRLVQVLRNLIGNAISFSPEGGTIRLAASRHGPTIRLTIEDDGPGIPDGKL-DA 473

Query: 167 IVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D                 +       +   +  R+  E   +        L+
Sbjct: 474 IFDRFYTERPAGEKFGTHSGLGLSISKQIVDAHGGRIWAENRAEGGARFVVELK 527


>gi|114330759|ref|YP_746981.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas
           eutropha C91]
 gi|114307773|gb|ABI59016.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas
           eutropha C91]
          Length = 414

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 66/225 (29%), Gaps = 15/225 (6%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-----ELLDEVGIEDEVMQLIRLSS 57
              N  +  L A+  + + + H + +P+            E LD         + I    
Sbjct: 168 REQNRRNQRLAAMGEVAAGLAHQLRTPLSTALLYAGHLSAETLDAQERSSFAAKTIERLH 227

Query: 58  MSAIIRLKFMRLAFGYTGS---VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----ID 110
               +    ++   G +     V   + L  ++QV+   +   +   V            
Sbjct: 228 HLEHLIRNMLQFVKGESVPAGKVKLSVLLRKLQQVMAPQMQQRQLRFVVEDNSMGSSLNV 287

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                +  ++NL   A    P G  +T+  + + NE    +   G          ++ + 
Sbjct: 288 NRDALSNAVMNLLDNAVQIAPAGSLITLICETTMNEARLIISDEGPGIDPV-LHERVFEP 346

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              + I+   +    V  L    +  +  +         +  L +
Sbjct: 347 FFTTRIEGTGLGLAIVHNLIQSMQGEIRIDSTPGIGTRFTICLPR 391


>gi|331268335|ref|YP_004394827.1| sensor histidine kinase [Clostridium botulinum BKT015925]
 gi|329124885|gb|AEB74830.1| sensor histidine kinase [Clostridium botulinum BKT015925]
          Length = 461

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 76/235 (32%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MAK++       +   +  S + H++ SPI +I   +  + +       E+  + +    
Sbjct: 227 MAKSLE---EVEENRRVFISNVSHELRSPITSIKGFIGGILDGVIPKEKENYYLSVAYEE 283

Query: 57  SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                  +  +                     + +       + +     ++  V +   
Sbjct: 284 IQRLTRLINDLLDLSSIEAGKFVLNVKEEDINEIIRLSIIKFETVIKSKKINVEVWLDDE 343

Query: 106 GEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              + + R+   +++ NL   A       G + I  +    +   S+  +G      +  
Sbjct: 344 RLSVLVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTKVKGQKVFVSVYNDGPNISKEDGK 403

Query: 163 -KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +   G+   T+  S  +    V  +  ++   +  E  ++  V+ +  L+K
Sbjct: 404 YIWDRFYKGDKSRTLKVSTGLGLSIVRRIVTQHGGDIWFENKENKGVIFTFTLKK 458


>gi|322421715|ref|YP_004200938.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320128102|gb|ADW15662.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 486

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 36/248 (14%)

Query: 1   MAKNICFNLSSMD----------------LVALLCSRICHDIISPIGAIHNSLELLD--- 41
           +A+N+   +  +                  V  L + I H+I +P+  I  +++ L    
Sbjct: 216 LAENLNEMVKKLKEKEQLEKRLYEAEHLSKVGQLAAGIAHEIRNPLNYISLAIDHLKSEL 275

Query: 42  -----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVI 90
                E G E + +       +     +    + +G    +              ++ + 
Sbjct: 276 LPSCPEKGGELKSIADNIKEEVRKANYMVLNFMNYGRPLKLKLQQVSYPDLVDKAMQIMQ 335

Query: 91  EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKN-- 145
           +     +  V      +   +  +   +   L      +  ++P GG +TI    +    
Sbjct: 336 DRLTERNIEVAREIPADLPAMQMDPELMRNCLCNFISNSTQAMPEGGTITIGAGIAPESG 395

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
           E   +    G      +   ++      +      +       +  E+   +  +     
Sbjct: 396 EYRLTFSDRGVGIDEQDL-EKVFQPYFTTREAGIGLGLAITERIIKEHGGSITVQSRKGE 454

Query: 206 NVVLSALL 213
               + +L
Sbjct: 455 GTTFTVIL 462


>gi|239616520|ref|YP_002939842.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
 gi|239505351|gb|ACR78838.1| histidine kinase [Kosmotoga olearia TBF 19.5.1]
          Length = 559

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 68/236 (28%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           +     +  ++ L +   + + H++ +P+ +I   + ++ +         + + + ++  
Sbjct: 308 EQDNIKIKELERLKSEFLATMSHELRTPLNSITGFVSMILQGISGEINEEQRKQLSMVHS 367

Query: 56  SSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           SS+  +  +                    +         + ++  +I             
Sbjct: 368 SSIHLLNLINDILDISKIEAGRMSFSKERFNIKDVISEVVQNVSLLISKKEVKLITEIPD 427

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              E     R   +ILLNL   A     +G  V I  +   N+   S+   G   +  + 
Sbjct: 428 EIPEIYSDKRRVFQILLNLVSNAIKFTEKGE-VRIKCEVDGNKLKISVSDTGKGIKEEDM 486

Query: 164 F-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + + G+         +  Y    L       +  E         +  L 
Sbjct: 487 ETLFEAFRQISGSARRRYQGAGLGLYLSKKLVTLLGGEIWVESEYGKGSTFTFTLP 542


>gi|238762839|ref|ZP_04623807.1| hypothetical protein ykris0001_31490 [Yersinia kristensenii ATCC
           33638]
 gi|238698850|gb|EEP91599.1| hypothetical protein ykris0001_31490 [Yersinia kristensenii ATCC
           33638]
          Length = 900

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSHHQIKVDLP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I  +         +  NG      +
Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYTAMLGIRAKVQGEWLNVEVWDNGPGVTAGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   D        L 
Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQDGGASFHFTLP 883


>gi|218531281|ref|YP_002422097.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218523584|gb|ACK84169.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 942

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 66/241 (27%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53
           K       S  L A+  L   + HD  + +  I  + ++L    + +E  Q         
Sbjct: 562 KTEDALRQSQKLEAIGQLTGGVAHDFNNLLTVIRGAAQMLCRPTLSEERRQRYAEAISET 621

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              ++      L F R         +    +  I  ++   +     +  +   E   + 
Sbjct: 622 ADRAAKLTSQLLAFSRRQALKPEVFNVGQRVEVIADMLRTVVGSRVELTTNTECEICYVE 681

Query: 113 RERAK---ILLNLFMVAHASLPRGGK-------------VTISVQDSKNENIFSLKINGN 156
            + ++    L+N+ + A  ++   G+             +              +   G 
Sbjct: 682 ADPSQFETALVNMAVNARDAMDGVGQLAVTIEPTKAVPGIRGHKAAEGEFVAVYVTDTGT 741

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                EK  QI +    +        +    V   A ++   +  E            L 
Sbjct: 742 GI-PSEKLAQIFEPFFTTKEVGKGTGLGLSQVYGFAKQSGGEVGVESTVGEGTTFKVYLP 800

Query: 215 K 215
           +
Sbjct: 801 R 801


>gi|119510682|ref|ZP_01629810.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
 gi|119464636|gb|EAW45545.1| two-component system sensory histidine kinase [Nodularia spumigena
           CCY9414]
          Length = 574

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 18/247 (7%), Positives = 64/247 (25%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53
           + +      ++    ++  + + H++ +P+ A+    +LL +   +          ++ I
Sbjct: 324 LEQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLQDDATDLDLTGDFITDLETI 383

Query: 54  RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +    +  +                Y  + +    + ++   ++  I  +  +   + 
Sbjct: 384 NSAGRHLLELINDILDLSKIEAGKMTLYPETFEIAKLINNVVLTVKSAIDKNNNILEVYC 443

Query: 106 GE----KIDLSRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKI 153
            +             ++LLNL   +                K  +  + + +   FS+  
Sbjct: 444 DQQLGTMYADQTRMRQVLLNLLSNSAKFTTNGKVTLTVKREKTDLPPEAAFDMITFSVTD 503

Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G      +   Q+                   +               +  +       
Sbjct: 504 TGIGMSESQ-QQQLFKPFTQGDTSTTKRYGGTGLGLAISRHFCQMMGGEVFVKSQPGVGS 562

Query: 208 VLSALLE 214
             +  L 
Sbjct: 563 TFTVHLP 569


>gi|222054698|ref|YP_002537060.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221563987|gb|ACM19959.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 542

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 60/226 (26%), Gaps = 16/226 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSM 58
               + S  L ++  L + I H+I +P+  I     L+++    D      ++ I   + 
Sbjct: 290 QAQLIRSEKLASIGELVAGIAHEINNPLTGILVFSSLVNDDPKLDPELKDDLKTIVQETE 349

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKIDLSR 113
                +K +      +     L  + DI  +         +  +  +   +T +  D+  
Sbjct: 350 RCSKIVKGLLDFSRESLPQKKLSSINDILDLALSLVEHQILFQNIALIKDYTFDMPDIML 409

Query: 114 ERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  +       +   +           +   + +        +   G             
Sbjct: 410 DPNQFEQVFINMLLNAGQSMANGGSLNIRTGITEDGLSEFIGISDTGCGIPEENLTKIFD 469

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       +   ++  +  + +  +    +  L 
Sbjct: 470 PFFSTKENKGTGLGLSVSYGIIRNHRGDICVQSVVGNGTTFTIELP 515


>gi|110638473|ref|YP_678682.1| sensor histidine kinase/response regulator fusion protein
           [Cytophaga hutchinsonii ATCC 33406]
 gi|110281154|gb|ABG59340.1| sensor histidine kinase/response regulator fusion protein (sensor
           for arcA) [Cytophaga hutchinsonii ATCC 33406]
          Length = 492

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 64/233 (27%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----- 51
           + +++  N+  ++            + HD+ +P+ +I+N  ++L++        +     
Sbjct: 257 LNQDLHENIQQLENANKELESFSYSVSHDLRAPLRSINNYAQMLEDAFAAQMDEKSTRLL 316

Query: 52  --LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTG 106
             + R +     +    +  +      V       +                   +    
Sbjct: 317 GNIKRNAFRMDTLIDDLLAFSRLGRKPVQKQSINMNDLVQHVYADMQGTFKGEFVLPALP 376

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE-- 162
           +         ++++NL   A     +  +  I      + N  ++ +K NG         
Sbjct: 377 DIDADYNLLKQVVVNLLSNAIKYSGKIEEPRIEVGYTKNPNAVVYYIKDNGAGFDMEYSD 436

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F      +     +   +    V  +  ++   +  E            L 
Sbjct: 437 KLFGVFQRLHSTKEFEGTGVGLAIVKRIVEKHGGTIWAEAKVGEGATFYFSLP 489


>gi|307822869|ref|ZP_07653100.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307736473|gb|EFO07319.1| PAS/PAC sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 417

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPI-GAIHNSLEL----LDEVGIEDEVMQLI 53
           M            L A+  + + + H + +P+  AI  + ++    LDE   +    +++
Sbjct: 162 MRNLQDMLNQQKQLSAMGEMVASMAHQVRTPLATAILYASQMSNPALDEEKRQRFSQKIL 221

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        +  A     ++++      +  + E         ++         + 
Sbjct: 222 ERLQYLERQVNDMLIFAKDGRLAMETFSLAELLSHLREAVKEYTGSGRIDLQIINDVQND 281

Query: 114 ER-------AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                       LLNL   A  +L + G V ISV           +K +G      E   
Sbjct: 282 AMLGNENALRGALLNLLNNAVDALGQVGCVQISVTQLDACNLRVVVKDDGPGI-AKELCQ 340

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +    +      +    V  +   +   +  E +     V + +L 
Sbjct: 341 RVFEPFFTTKSYGTGLGLAVVDSVVKAHGGHVSVESVLGQGTVFTLVLP 389


>gi|299065136|emb|CBJ36300.1| sensor histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [Ralstonia
           solanacearum CMR15]
          Length = 937

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRL 55
           A++    + S  L   L + + HD+ +P+  +    E L         +Q      +   
Sbjct: 691 AQDALVRIESERLRNSLLAAVSHDLRTPLTGLAGMAETLLRTQPPLPPLQAEAAEAIGEQ 750

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTGEK 108
           +     +    + +A      V   +    IE++                   ++     
Sbjct: 751 AQRMRAMVTNLLDMARLQNRDVKLRLEWQSIEELVGAALKGTPLPTHAVVVDDLADLPLL 810

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNLARFPE- 162
                   ++L NL   A    P G +V I           +E    ++ +G        
Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISAGVVHDAAHGDEMRVRVRDHGPGVPAGAE 870

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G+ ES      +       +   +  R+  E   D        L 
Sbjct: 871 RVIFEKFTRGDKESATGGVGLGLAVCEAIVSAHGGRIWVETPADGGACFVVALP 924


>gi|260772841|ref|ZP_05881757.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
 gi|260611980|gb|EEX37183.1| signal transduction histidine kinase [Vibrio metschnikovii CIP
           69.14]
          Length = 578

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 57/235 (24%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+    + +     +   + + H++ +P+ A+   +++L E       + L+     SA 
Sbjct: 200 AQQQAEHANQAK--SQFLAMMSHELRTPLNAVLGLIDVLRE-DSNRSQLDLLEQMENSAE 256

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +                    ++  + +             +  +   I  + R  +   
Sbjct: 257 LLLVIINDILDLSRIESGHFKLQCHWVHLHKKLVHALSYHHKACVTKGIRFNVRTSICDH 316

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            E         +IL N+   A      G                 ++  G     PE+  
Sbjct: 317 YEYWVDPVRLMQILFNVIGNAIKFTEAGSVDVRLSTARNELV-IHVEDTGIGI-EPERIE 374

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +              +       L    K  +               L 
Sbjct: 375 HLFSPFIQADSSITRHYGGTGLGLAITKHLVELMKGTISVSSCLGQGSHFIIRLP 429


>gi|158338730|ref|YP_001519907.1| two-component hybrid sensor and regulator [Acaryochloris marina
           MBIC11017]
 gi|158308971|gb|ABW30588.1| two-component hybrid sensor and regulator, putative [Acaryochloris
           marina MBIC11017]
          Length = 805

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 65/243 (26%), Gaps = 34/243 (13%)

Query: 3   KNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELL-DEVGIEDEVMQLI 53
           +     LS     A + SR        + H++ +P+ AI    +++  +  + +   +  
Sbjct: 449 QQSNLELSQAKEAAEMASRAKGKFLAKMSHELRTPLNAILGFSQMMAQDTTLSEANHKRN 508

Query: 54  RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
           RL + S                     + +R       ++   +      ++ +  +A  
Sbjct: 509 RLINQSGEHLLGLINDILSLAKLESGKQELREGPFQLSTLLETVEGIFRLRIEQKGLAFR 568

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKIN 154
            +            +++  ++L+NL   A           ++      +     F ++  
Sbjct: 569 VKATPDLPPYLFGDAQKLRQVLINLLSNALKFTPAGHIFLRIGSIPTPAGLTLRFEIEDT 628

Query: 155 GNLARFPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      E   ++     ++           +        A      +            
Sbjct: 629 GEGIAASELH-KLFVPFEQTESGEKSKAGTGLGLPISQQFAQLMGGDIKVSSQVGQGTTF 687

Query: 210 SAL 212
           +  
Sbjct: 688 TFT 690


>gi|148656475|ref|YP_001276680.1| histidine kinase [Roseiflexus sp. RS-1]
 gi|148568585|gb|ABQ90730.1| histidine kinase [Roseiflexus sp. RS-1]
          Length = 399

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 66/228 (28%), Gaps = 15/228 (6%)

Query: 1   MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSS 57
           +A       +  M L   L +   HDI +   ++    +LL +         ++ I  ++
Sbjct: 154 LATTERLRPIEEMQLRVTLAAGAAHDIGNLFASVLGHAQLLQQAAPLELQNDLKTIEQAA 213

Query: 58  MSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106
                 L+ +        +       V     + D  ++ + +         ++ ++   
Sbjct: 214 RDGHHLLRRLLSARNASYMPETTMAPVLLTELVHDALRLTQPWWGARHSVTVKIALTPVP 273

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  ++L+NL +    ++P GG +T+         I  +   G       +   
Sbjct: 274 PVRGHPADLREVLVNLILNGVDAMPEGGTLTVRTYSVNERAIVEISDTGVGIAPAHQNA- 332

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    V +      +       +       +    I       S  L 
Sbjct: 333 IFQPFVTTRKGGSGLGLSVSRAIIERYGGTISVSSIPGRGATFSISLP 380


>gi|116749734|ref|YP_846421.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698798|gb|ABK17986.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 870

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 61/240 (25%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     S     +   + + H+I +P+ AI     LL  +  +      ++    S  
Sbjct: 377 AKDTAEAASKAK--SEFLANMSHEIRTPMNAILGFTSLLSPLITDPRQKNYLQSIQSSGK 434

Query: 62  IRL----------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +                  ++       SV   +       + +  +     +     
Sbjct: 435 NLMSLINDILDLSKIEAGKMEIQYEPVVLRSVFVDLEKVFSWIIQDKGLQFITSIASDVP 494

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARF 160
              +       +IL NL   A      G     + +++         +  ++  G   + 
Sbjct: 495 ECVLLDEVRLRQILFNLVGNALRFTESGWIRLSAWREAGAGDGSFCLVMVVEDTGMGIQ- 553

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   +I +   +             +       L       +  +       V    L 
Sbjct: 554 PEAHNRIFESFRQQSGQRARVYGGTGLGLTISKSLVEMLGGTISVQSRPGAGSVFEIRLP 613


>gi|330508230|ref|YP_004384658.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929038|gb|AEB68840.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 998

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 65/237 (27%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +  + +   + + H+I +P+ AI     LL E  +  E    I +   + 
Sbjct: 487 LKKAKREAEEAARVKSDFLANMSHEIRTPMNAIIGMTSLLLEEPLTPEQRDCIEVIETNG 546

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSW 104
              L  +     ++   ++   L + +  I   +                 +   +  S 
Sbjct: 547 DALLTVINDILDFSKMENNKTVLEECQFAIAQCVEDSLDLVGINAANKGLNLAYSIDKSV 606

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
               +    +  ++L NL   A     +G  V        D  N   F ++  G      
Sbjct: 607 PEMIVGDPSKLKQVLGNLLSNAVKFTDKGEVVVTVSAQEVDGDNVIQFEVRDTGIGIPQN 666

Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      ++ +         +       L    K R+  E  +         +
Sbjct: 667 RMKLLFLPFSQMEPSTSRLYGGTGLGLAISKRLVEMMKGRIWAESSEGTGSSFHFTI 723


>gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 930

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 46/239 (19%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +++       +  +       + + H+I +P+  I    ++        EV + + L  
Sbjct: 422 ERDLERARKQAEAASRAKSGFLANMSHEIRTPLSGIIGLTQMTLSQTPRPEVREHLELIL 481

Query: 58  MSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQ 101
            S+                            D    L    +               R+ 
Sbjct: 482 DSSRSLLAIVNDILDFSKIEAGKMEFSPVDFDLREILDRTMKPFHFSSRQKGLRLSLRIA 541

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLA 158
                          +++ NL   A     +G                   S++  G   
Sbjct: 542 QELPDILHGDPDRIMQVVRNLVGNALKFTDKGEVAVEFRLLRPGDPMLVECSVRDTGIGI 601

Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                       +              +       L       +          V S  
Sbjct: 602 PEERLPELFQVFSQLESSRTKRYGGTGLGLAISRRLVEMMGGTIGVRSRPGQGSVFSFT 660


>gi|229134443|ref|ZP_04263256.1| hypothetical protein bcere0014_33540 [Bacillus cereus BDRD-ST196]
 gi|228649064|gb|EEL05086.1| hypothetical protein bcere0014_33540 [Bacillus cereus BDRD-ST196]
          Length = 516

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 68/227 (29%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLHPEINEENKWYVDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
           I          +   +       + +    + ++   I     +     +    +     
Sbjct: 341 ISQMESITSQFMAMSKPQVLSIHTCNVQTLIEEVVTFILPTAIMHSVHIIMDHFDYISDI 400

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
              S +  ++L+N+   A  ++P GG + I     +N      +   G      E+  ++
Sbjct: 401 QCDSNQLKQVLINILKNAIEAMPDGGNIFIQTTSLENDFVSIRIMDEGCGI-PEERMARL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +    +   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIQEHHGKLFISSELNIGTTVDIQLP 506


>gi|196228678|ref|ZP_03127544.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226959|gb|EDY21463.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 891

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMS 59
           ++       M+ +  L   I HD+ + +G I  +++L      + + ++L+     S+  
Sbjct: 510 ESQFLRAQRMESIGTLAGGIAHDLNNVLGPIIMAVDLFRLKMTDPQDLELLETVSVSARR 569

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               +K        +         V  L  +  I +                T   +   
Sbjct: 570 GADMVKQVLSFARGLEGQRTLVRPVQLLKEVQRIARDTFPKFISVDITTAEDTWSLLGDP 629

Query: 113 RERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157
            +  ++LLNL + A  ++P+                              +  +  +G  
Sbjct: 630 TQLHQVLLNLCVNARDAMPQGGRLTLNACNQRIDDHFAAMHPEARPGPHVVLEVADSGTG 689

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P+   +I +    +        +     + +   +   +  E            L 
Sbjct: 690 M-TPDVIEKIFEPFFTTKEVGKGTGLGLSTTLAIVRSHNGFVTVESHPGKGTKFRVHLP 747


>gi|75908655|ref|YP_322951.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702380|gb|ABA22056.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 537

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/203 (9%), Positives = 61/203 (30%), Gaps = 12/203 (5%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           H++ +PI  I   LEL+     E +      +  +   +      +   +        ++
Sbjct: 323 HELRTPITIIRGHLELMGNDPKEIQETLTIVIDELERMNRFVNDLMLLAKAERPDFLLLE 382

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGK 135
           +       E++      +  R+       +  +  +R ++   +      A         
Sbjct: 383 TFDVCTFTEELFAKVKGLGDRIWKLEAVARGKIVGDRQRLTQAVMNLAQNATQHTNNTDT 442

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-IDSHDIQFYYVILLAH 191
           + +     +++  F ++  G      +    F +           +   +    V  +A 
Sbjct: 443 IALGSMIYRDKVSFWVRDTGAGIASADQYRIFQRFARATNSRRLSEGAGLGLSIVQAIAE 502

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +K R+  +       V + ++ 
Sbjct: 503 AHKGRVTLQSELGAGSVFTIIIP 525


>gi|67923906|ref|ZP_00517363.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67854258|gb|EAM49560.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 374

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 20/215 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSMSAIIRLKFMRLA----- 70
           L S + H++ +P+  +   LE L    IE      +     +      +  ++       
Sbjct: 158 LISDMTHELRTPLTIMRGYLEELANGSIEGSPELYLNLVKETRRLERLIHDLQELSKAEA 217

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                  +           +      I D+    K   +      +  S    +IL+NL 
Sbjct: 218 GYLSISLYPINILPLLTSLVERFADQIMDYGPTIKLECIQELPPVLADSDRTEQILVNLI 277

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178
             A     +G     +  +   +    +   G   +  +    F +    +   +     
Sbjct: 278 GNAIRYTEKGTITIKAWSE-NKQVWVEIIDTGIGIKPEDLPYVFERFWRADKSRSRYSGG 336

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             I       L      ++  E   D        L
Sbjct: 337 TGIGLAITRRLVELQGGKIEVESEVDQGTTFRFNL 371


>gi|254558948|ref|YP_003066043.1| two component low oxygen sensor histidine kinase with PAS domains;
           FixL [Methylobacterium extorquens DM4]
 gi|254266226|emb|CAX21984.1| two component low oxygen sensor histidine kinase with PAS domains;
           FixL [Methylobacterium extorquens DM4]
          Length = 516

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE---- 46
            +     L S       L A+  + S + H++  P+GAI N       LL   G E    
Sbjct: 267 TQQRLQELQSELVHVSRLSAMGEMASTLAHELNQPLGAISNYTKGCRRLLANPGPEAIAK 326

Query: 47  -----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVD 97
                D+  +    +        +F+               + +   +      +     
Sbjct: 327 SMEVLDKTAEQALRAGQIIRRLREFVTRGETERRLEPVSRLIEEASALALVGAREQGVAA 386

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKIN 154
           +          +    +  ++L+NL   A  ++ +  +  ++V            S+   
Sbjct: 387 RIRIAPGLKAVLADRVQVQQVLVNLMRNAREAMQQSERREMAVDAHALSSEMVEISVSDT 446

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           G      E   ++    V + +    +       +   +  RL  E            L
Sbjct: 447 GPGI-ADEVADRLFQPFVTTKVSGMGVGLSICRTIIEAHGGRLTVERNVAGGATFRLTL 504


>gi|257068118|ref|YP_003154373.1| histidine kinase [Brachybacterium faecium DSM 4810]
 gi|256558936|gb|ACU84783.1| histidine kinase [Brachybacterium faecium DSM 4810]
          Length = 415

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 71/234 (30%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A ++   +   +      + + H++ +P+GAI    E +++   + + ++         
Sbjct: 142 LADDLTRAVRVEETRRDFVANVSHELKTPVGAITLLAETMEDAAEDPDAVRRFAGRMQGE 201

Query: 61  IIRLKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
             RL  +         V            +I+ V+E+ +A+++ + +    E      + 
Sbjct: 202 TRRLSHLVQEIIELSRVQGGSALPDAEPIEIDDVVEEAVALNRNLALGSKIEVSVGGMQG 261

Query: 116 AKILLNLFM----------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            ++  +  M           A +      ++ ++V+        S+K  G          
Sbjct: 262 LQVFGSAAMLTTALSNLISNAISYSDARTRIGVAVRRDGGMVEISVKDQGIGIAKDHLER 321

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +    V  +A ++   +    +       +  L 
Sbjct: 322 VFERFFRVDRARSRATGGSGLGLAIVKHIASDHGGEVTAWSLPGQGSTFTLRLP 375


>gi|262196389|ref|YP_003267598.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079736|gb|ACY15705.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 765

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 65/245 (26%), Gaps = 35/245 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRI--------CHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
                  L      A + SR+         H+I +P+  +     LL +  + DE  +  
Sbjct: 367 RHQQSELLREAKEAAEVASRVKSDFLATMSHEIRTPLNGVIGMASLLLDTELSDEQREYA 426

Query: 54  RLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVS 103
               +S  +        +  +    G ++      ++  +IE+        A +K + + 
Sbjct: 427 ETIDVSGNLLLALINDILDFSKIEAGRMELEEVAFELRYLIEETLAIVAPRAREKNLSLD 486

Query: 104 WT------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKI 153
           W          I  ++   ++LLNL   A      G          +         ++  
Sbjct: 487 WQAEAAVPRRVIGDAQRMRQVLLNLVGNAIKFTHDGSVEIRVRVREREGDALLLEVAVAD 546

Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G      E   +I +                 +       L       ++ +       
Sbjct: 547 TGIGISPGEMM-RIFEPFSQADASTTRQYGGTGLGLAICKRLVDRMGGTVVVKSQPGRGS 605

Query: 208 VLSAL 212
             S  
Sbjct: 606 TFSFT 610


>gi|223937199|ref|ZP_03629106.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223894221|gb|EEF60675.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1309

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 72/243 (29%), Gaps = 30/243 (12%)

Query: 2    AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
             +N+   L     M+ V  L   I HD  + +  I     LL        +      +++
Sbjct: 921  RQNLEAQLRQSQKMESVGQLAGGIAHDFNNILTVIQGHGSLLGMVEHLPKEAQDSAQQII 980

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 ++      L F R        +D    + ++ +++   +  D  +QV++      
Sbjct: 981  LAAERAANLTKQLLTFSRRQVIQPKELDLNEVISNMTKMLRRLLGEDITLQVNYAPSLPQ 1040

Query: 111  LSRE---RAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152
            +  +     +ILLNL + A  ++P               +G  +      +      ++K
Sbjct: 1041 VHADPGMMEQILLNLAVNARDAMPKGGRLLIYSSAMTLDQGQALRHPGARAGEYVCVTVK 1100

Query: 153  INGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              G                    +     +    V  +  ++K  +  +       +   
Sbjct: 1101 DTGTGIAPEHVPKIFDPFFTTKDVGKGTGLGLATVYGIVQQHKGWITVDSTVGKETIFQI 1160

Query: 212  LLE 214
             L 
Sbjct: 1161 FLP 1163


>gi|218779534|ref|YP_002430852.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760918|gb|ACL03384.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 781

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 62/241 (25%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           ++        + +  L S I HD  + + AI    E+    + E  +    +  +  +S 
Sbjct: 400 ESQLQQAQKAEAIGTLASGIAHDFNNILSAIMGYTEMCTMEIPEGSMAHNNLLQVLKASH 459

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
            A   +  +       G     + +  +       +       +++         +    
Sbjct: 460 RAKDLVGQILTFSRQKGQEQKPVQMDLVVNEALKLLRASLPSTITFRRYIKREMGKVLAD 519

Query: 116 ----AKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKING 155
                ++L+NL   A  ++                     +             ++   G
Sbjct: 520 PTALHQVLMNLCTNASHAMRNAGGVLEVRLENKAFEPDEPLPDPGMAPGRYLRLTVSDTG 579

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +     +   +I D    +    +   +    V  + + +   +  +            L
Sbjct: 580 HGM-DAQTMERIFDPYFTTKEMGEGAGLGLAVVQGIVNSHGGVITVKSTLGEGSSFRVYL 638

Query: 214 E 214
            
Sbjct: 639 P 639


>gi|161527757|ref|YP_001581583.1| histidine kinase [Nitrosopumilus maritimus SCM1]
 gi|160339058|gb|ABX12145.1| histidine kinase [Nitrosopumilus maritimus SCM1]
          Length = 459

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 82/222 (36%), Gaps = 10/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSS 57
           +N       +  +  + +RI HD+ +P+  I N++ ++     E      +   +I+   
Sbjct: 234 QNELVKTERLTTIGEMSARITHDLRNPLTTIKNAVAVMKMKNPEKIKENQQYFDMIQDGV 293

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                ++  +           + +   +I   + + I++ + +++S +     +  ++ +
Sbjct: 294 TRMNHQIDEVLAFVKAKEPERNFVEFSEISNNVLNTISIPENIKISISESNEKIWCDKIQ 353

Query: 118 IL---LNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +    +N+   +  ++    G++ I  +     +  ++K NG           + +    
Sbjct: 354 LQNVLINMISNSVQAIGKNQGEIIIDYKIEGEFDKITVKDNGTGIPEN-LLDAVFEPLYT 412

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  D   +           +  ++  + +D+   + + LL K
Sbjct: 413 TKQDGTGLGLVSCKNAVEAHNGKIYAQNLDEGGAIFTILLPK 454


>gi|153800850|ref|ZP_01955436.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
 gi|124123560|gb|EAY42303.1| tmao reductase sytem sensor tors [Vibrio cholerae MZO-3]
          Length = 649

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 122 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 181

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   +                     +    T
Sbjct: 182 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 241

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 242 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 301

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 302 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLP 355


>gi|94265878|ref|ZP_01289607.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453573|gb|EAT03972.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 436

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 68/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A +      +    +   +   H++ +P+ ++   ++LL +  +     Q + +   + 
Sbjct: 32  LALDRAERADTAK--SRFMAGFSHEVRNPLNSLLGLIDLLRQTELTPRQQQFMEMIDHTG 89

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSW 104
              L  +  A  +T    + + L ++                 Q  +  I+   ++    
Sbjct: 90  QHLLGVLNQALSFTSLEQASLELNEMEFDLPALLRGIFSPYQLQWQQRGISGQLQLDPEL 149

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFP 161
                       ++L+NL   A     +G       +  ++ +      ++  G      
Sbjct: 150 PALWHGDPHRLRQVLVNLLDNAGKFTQQGRITLAANMEQRNGRPFVHCRVEDTGVGIPAA 209

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +I          + S      +       L       +     D        +L +
Sbjct: 210 KA-EKIFTPFAQADGSISSRFGGTGLGLTICRQLIELMGGEIWVTGGDRSGSSFHFVLPR 268


>gi|291523774|emb|CBK89361.1| Signal transduction histidine kinase [Eubacterium rectale DSM
           17629]
          Length = 499

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + KN    +++     +L S I HD+ +PI A+    E + +        ++  V  +  
Sbjct: 251 LKKNAEEKVTNESENRVLISNIAHDLKTPITAVKGYAEGILDGVANTPEKVDKYVRTIYN 310

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102
            ++    +  +    +   T  +                       +    I +     V
Sbjct: 311 KANDMDKLINELTLYSKIDTNRIPYNFAKINVTDYFNDCVEEIGLDLEAKNIRLSYENHV 370

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I    +  +++ N+   +   + +    + I + D  +     ++ NG      
Sbjct: 371 DSNVLIIADPEQIRRVINNIVGNSVKYMNKTQSYIDIRINDVGDFIQVEIEDNGRGINQR 430

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  ++     +     +  ++ K
Sbjct: 431 DMPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKEGDGTTMFFVIRK 489


>gi|238922877|ref|YP_002936390.1| sensor histidine kinase [Eubacterium rectale ATCC 33656]
 gi|238874549|gb|ACR74256.1| sensor histidine kinase [Eubacterium rectale ATCC 33656]
          Length = 503

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + KN    +++     +L S I HD+ +PI A+    E + +        ++  V  +  
Sbjct: 255 LKKNAEEKVTNESENRVLISNIAHDLKTPITAVKGYAEGILDGVANTPEKVDKYVRTIYN 314

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102
            ++    +  +    +   T  +                       +    I +     V
Sbjct: 315 KANDMDKLINELTLYSKIDTNRIPYNFAKINVTDYFNDCVEEIGLDLEAKNIRLSYENHV 374

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I    +  +++ N+   +   + +    + I + D  +     ++ NG      
Sbjct: 375 DSNVLIIADPEQIRRVINNIVGNSVKYMNKTQSYIDIRINDVGDFIQVEIEDNGRGINQR 434

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  ++     +     +  ++ K
Sbjct: 435 DMPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKEGDGTTMFFVIRK 493


>gi|227873345|ref|ZP_03991606.1| integral membrane sensor signal transduction histidine kinase
           [Oribacterium sinus F0268]
 gi|227840823|gb|EEJ51192.1| integral membrane sensor signal transduction histidine kinase
           [Oribacterium sinus F0268]
          Length = 469

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MA+ I  +           + + HD  SP+ +I   LE + +       E++ +  +   
Sbjct: 232 MAEEIQKSDDYQR---QFIANVSHDFRSPLTSIKGYLEAMLDGTIPKEAEEKYLLRLISE 288

Query: 57  SMSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWT 105
           +         +  +      +    S   L  + + +     +  +        V     
Sbjct: 289 TERLSKLTQSMLSLNKLDQGSSLNRSNFDLNRMIREVCASFEMQCQKKKLGFSLVFAEKK 348

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                   +  ++  NL   A        ++ I  +    + +  +K  G      +   
Sbjct: 349 QMVNGDYPKIQQVFYNLLDNAVKFSKEDSEIQIRTEQKGTKVLVGIKDQGIGIPKKDLGK 408

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    ++    D     +    V  +   +   +     +      S  L 
Sbjct: 409 IWERFYKTDISRGKDKAGTGLGLAIVKSIITAHGENIDCVSTEGVGTEFSFSLP 462


>gi|298530785|ref|ZP_07018187.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510159|gb|EFI34063.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 693

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 71/246 (28%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------- 51
           + K     + S  +  L  L   + H+I +P+G I    +LL E    DE  +       
Sbjct: 431 LKKYQEQLIQSQKMEDLGRLAGGVAHEINTPLGIILGYTQLLLEEVENDEWAEDLKTIEK 490

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKID 110
             ++        L F R +   +  VD    L ++ ++          R+  S       
Sbjct: 491 QTKICRKIVADLLGFSRYSQSTSQPVDMNRSLEEVIKLVEHVLSLSHIRIYKSLDPNIPP 550

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165
              +     ++ LNL   A  ++ + G + +       +   I S+   G      E  +
Sbjct: 551 FVGDHERLKQVWLNLINNAADAIGQDGVIYVKSKLCAHRQRIIISIADTGAGI-EEESLS 609

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIID---------------DHNVV 208
           +I D    +        +       +  ++   +                         V
Sbjct: 610 KIFDPFFTTKSVGKGTGLGLSVSFGIIKDHGGDISALSPPPVEYLPRDFPRSPSYGPGTV 669

Query: 209 LSALLE 214
               L 
Sbjct: 670 FIVELP 675


>gi|298482826|ref|ZP_07001009.1| two-component system sensor protein [Bacteroides sp. D22]
 gi|298271026|gb|EFI12604.1| two-component system sensor protein [Bacteroides sp. D22]
          Length = 541

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    E++ +   E+E  + +++ S + 
Sbjct: 304 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEEKQEFVKIISSNN 363

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
           I+ L+ +               +T +   +  L +              VQ+ +      
Sbjct: 364 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQ 423

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A     +G        +  ++   F +K  G      +K 
Sbjct: 424 CIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGI-PADKI 482

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +  V   S I    +      ++       +  E  +         + +
Sbjct: 483 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPR 535


>gi|296166497|ref|ZP_06848928.1| phosphate regulon sensor histidine kinase protein PhoR
           [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898109|gb|EFG77684.1| phosphate regulon sensor histidine kinase protein PhoR
           [Mycobacterium parascrofulaceum ATCC BAA-614]
          Length = 480

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 56/211 (26%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + +    L       V   + 
Sbjct: 257 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGMLVDDLLLLARLDVQRPLE 316

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKI-------------DLSRERAKILLNLFMVAHAS 129
              ++ +     AV     +                           ++L NL   A   
Sbjct: 317 HNRVDLLALASDAVHDAQAMDPGRTITLEVLDGPGIPEVLGDEPRIRQVLSNLVANALQH 376

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ +  +   G      +    F +    +           +   
Sbjct: 377 TPEAADVTVRVGTEGDDAVLEVADKGPGMTEQDASRVFERFYRTDSSRARASGGTGLGLS 436

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 437 IVDSLVRAHGGAVTVTTAPGEGCRFRVTLPR 467


>gi|237713589|ref|ZP_04544070.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406312|ref|ZP_06082861.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294646555|ref|ZP_06724191.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294806620|ref|ZP_06765454.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
 gi|229446311|gb|EEO52102.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355015|gb|EEZ04106.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638078|gb|EFF56460.1| PAS domain S-box [Bacteroides ovatus SD CC 2a]
 gi|294446156|gb|EFG14789.1| PAS domain S-box [Bacteroides xylanisolvens SD CC 1b]
          Length = 541

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    E++ +   E+E  + +++ S + 
Sbjct: 304 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEEKQEFVKIISSNN 363

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
           I+ L+ +               +T +   +  L +              VQ+ +      
Sbjct: 364 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQ 423

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A     +G        +  ++   F +K  G      +K 
Sbjct: 424 CIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGI-PADKI 482

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +  V   S I    +      ++       +  E  +         + +
Sbjct: 483 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPR 535


>gi|169794307|ref|YP_001712100.1| two-component sensor [Acinetobacter baumannii AYE]
 gi|213159118|ref|YP_002321116.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           AB0057]
 gi|215481864|ref|YP_002324046.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           AB307-0294]
 gi|239502827|ref|ZP_04662137.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           AB900]
 gi|301345739|ref|ZP_07226480.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           AB056]
 gi|301511639|ref|ZP_07236876.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           AB058]
 gi|301596187|ref|ZP_07241195.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           AB059]
 gi|332850112|ref|ZP_08432499.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           6013150]
 gi|332871440|ref|ZP_08439957.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           6013113]
 gi|169147234|emb|CAM85093.1| two-component sensor [Acinetobacter baumannii AYE]
 gi|213058278|gb|ACJ43180.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           AB0057]
 gi|213988006|gb|ACJ58305.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           AB307-0294]
 gi|332730961|gb|EGJ62267.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           6013150]
 gi|332731477|gb|EGJ62767.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           6013113]
          Length = 452

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78
            I H++ +P+  +   +E   +    +   +       S   R+  +        +++  
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L  +  ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445


>gi|153807923|ref|ZP_01960591.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
 gi|149129532|gb|EDM20746.1| hypothetical protein BACCAC_02209 [Bacteroides caccae ATCC 43185]
          Length = 991

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 59/229 (25%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN     + +    L  + + H+I +P+ AI     +L     E+E  + + +   +  
Sbjct: 620 AKNRAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYVSIIENNNT 677

Query: 62  ----------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TG 106
                        K          S   +  L    +           V++ +       
Sbjct: 678 LLLQLISDILDLSKIEAGTLDLHYSNVEINDLMRELENSCQLKLKSDNVKLEFVAPEEPC 737

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++++N    A     +G       + +     F +   G      +  + 
Sbjct: 738 FANIEKNRLSQLIINFVTNAIKFTSQGSIRFGYERQNNE-LYFYVTDTGCGIPQDKLDSI 796

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S      +       L +    ++  E  +         L 
Sbjct: 797 FGRFVKLNSFAQGTGLGLSICRTLINHMGGKIGVESEEGKGSTFWFTLP 845


>gi|127512372|ref|YP_001093569.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella loihica PV-4]
 gi|126637667|gb|ABO23310.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella loihica PV-4]
          Length = 607

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 60/231 (25%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           + +     + +  L  +  L + I H+I  P+ AI +  +    L      D+V   I  
Sbjct: 373 LKEAQDELIQAAKLTVIGSLSASINHEINQPLAAIRSYAQNTQTLLSRAKWDDVSSNIMT 432

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                      +     +T            +      +  V  +       + ++ T  
Sbjct: 433 IIELTDRLAAIVSQFKSFTRKSQGNDKAISVAQCIRDALTIVQPEVDKQGIDLVLNNTEC 492

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLKINGNLARFPEK 163
           +  L  +  ++   L  +   ++                       +++  G      + 
Sbjct: 493 QTLLWGDPIRLQQVLINLMSNAMVAMRANNPKQLIIGVVVSNRLEITIEDTGTGIDESQ- 551

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    S+     +       +    + ++          +    L 
Sbjct: 552 MQKIFDPYYTSSRQGLGLGLSISRRIVEAMQGKISVANRQQGGAIFQITLP 602


>gi|116623412|ref|YP_825568.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116226574|gb|ABJ85283.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 610

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           A+ I   +    + +   S + H+  SP+ +I +  E+L+                +   
Sbjct: 368 ARAIRREMEVSRMQSDFVSAVSHEFRSPLTSIRHLSEILELGRVPSEERRQVYYSTLVRE 427

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      ++ +                  ++   +  +    +  +A  +R+++S     
Sbjct: 428 TRRLQRLVEALLNFGRMEAGARPYRFEECEASALIHRVAGEFDAELAAGRRLELSGPERA 487

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +   + + L      A    P G  V +  +         ++  G      E+  
Sbjct: 488 CAVDGDPDALSVALRNVIDNAFKYSPDGPTVWVEWRVENARVAIQVRDQGLGITAAERRA 547

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        + +    +    V  +   ++  +  E           LL 
Sbjct: 548 IFRKFVRGSAAAAANVKGSGVGLAMVRHIVAAHRGEIRLESEPGSGSTFVILLP 601


>gi|295083878|emb|CBK65401.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 541

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 75/233 (32%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    E++ +   E+E  + +++ S + 
Sbjct: 304 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIVGFSEMVCQTEEEEEKQEFVKIISSNN 363

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
           I+ L+ +               +T +   +  L +              VQ+ +      
Sbjct: 364 ILLLQLIDDILDLSKIEAGTMEFTFAQTDINELMEGICRQMQEKNSSPDVQIVFTERANQ 423

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKF 164
                     +++++N    A     +G        +  ++   F +K  G      +K 
Sbjct: 424 CIINTDRIRLSQVIINFTNNALKFTSKGSIEMGYRIEEASDEIYFYVKDTGIGI-PADKI 482

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +  V   S I    +      ++       +  E  +         + +
Sbjct: 483 DKVFERFVKLNSFIKGTGLGLAICRVIVERLGGVIGAESKEGEGSCFWFKIPR 535


>gi|260174306|ref|ZP_05760718.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315922574|ref|ZP_07918814.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696449|gb|EFS33284.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 713

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 63/228 (27%), Gaps = 20/228 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI     LL E    +     + L   +  
Sbjct: 339 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAETDEIELRQAYMSLVQENNE 396

Query: 62  IR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------TG 106
           +        + ++    G+++   G  D+ Q+  + IA     +                
Sbjct: 397 LLLNLISDILDISKIEAGTIELTTGWVDVPQLCREVIATFSHKKHDGAVELRFDESSPQI 456

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L N    A     +G        +   +  F +   G      E+   
Sbjct: 457 VIDADKNRIMQVLSNFMTNALKFTTKGSITLSYTLNDDGQVRFCVTDTGKGI-PAEQCHD 515

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           I +  V  +S +    +       L      ++  E            
Sbjct: 516 IFNRFVKLDSFVQGAGLGLSICQSLVERMGGKIGVESCVGKGSCFWFT 563


>gi|258512528|ref|YP_003185962.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257479254|gb|ACV59573.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 429

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 59/224 (26%), Gaps = 20/224 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM 67
             + +   + + H++ +PI AI    E L +        ++ ++ I   S+     +  +
Sbjct: 201 ERMRSDFVANVSHELKTPIAAIRGFAETLLDGDVDEEAREKFLRTIYEESLRMGNLVSDL 260

Query: 68  --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERA 116
                     +     +VD    L      +            +                
Sbjct: 261 LELSKLEASDSHVDPVAVDLYEVLVRAVDRVRPVANEKEITIELPREQRLHVWAEPDLLL 320

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIV--DGN 171
           ++ LNL   A    P   +V ++     +     +K NG        P  F +      +
Sbjct: 321 QVFLNLLTNAIHYSPPKSRVCVTWDVLVDRVKVHVKDNGIGIPKESLPRVFERFYRVHKD 380

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +    V  +       +  E  +         L +
Sbjct: 381 RSRASGGTGLGLAIVKHIVTALGGEVGVESEEGKGSDFWFTLSR 424


>gi|254994023|ref|ZP_05276213.1| sensor histidine kinase [Listeria monocytogenes FSL J2-064]
          Length = 459

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA  +     S        + + H++ SP+ ++     LL    + ++            
Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             RL  +        S+D    L   E V  D           W+  + +L+        
Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   A    P+GG + + + +        ++ +G      E   +
Sbjct: 345 NNTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D              S  +       +   +   +  +   +        L K
Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLPK 458


>gi|254454308|ref|ZP_05067745.1| phosphate regulon sensor protein [Octadecabacter antarcticus 238]
 gi|198268714|gb|EDY92984.1| phosphate regulon sensor protein [Octadecabacter antarcticus 238]
          Length = 357

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 63/239 (26%), Gaps = 35/239 (14%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
            + D+     + + H++ +P+ ++   +E L     ++   +   + ++   +      +
Sbjct: 109 DANDMRRDFVANVSHELRTPLTSLLGFIETLRGPASEDRAAQTRFLGIMEQEAERMHNLV 168

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLS 112
           + +       G       L      + D +    + +                   +   
Sbjct: 169 EDLMSLNRVEGQARIKPTLQTNLCGLIDDVLAAMKPRADAAGVTLISEQPSGAVSILADR 228

Query: 113 RERAKILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +  +++ NL   A                R    T      +     S+   G+     
Sbjct: 229 EQMWQVIANLVENAVKYGTKSGSVGGVVTVRLCAPTHEPALLQTGVRLSVIDQGDGIAAH 288

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++              +    +    V  + + ++ RL    +       +A L 
Sbjct: 289 HI-ARLTHRFYRVDSHRSREVGGTGLGLAIVKHIINRHRGRLRISSVVGQGTEFTAFLP 346


>gi|226225128|ref|YP_002759235.1| two-component sensor histidine kinase [Listeria monocytogenes
           Clip81459]
 gi|254854408|ref|ZP_05243756.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|255519926|ref|ZP_05387163.1| two-component sensor histidine kinase [Listeria monocytogenes FSL
           J1-175]
 gi|300766081|ref|ZP_07076049.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017]
 gi|225877590|emb|CAS06304.1| Putative two-component sensor histidine kinase [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258607808|gb|EEW20416.1| sensor histidine kinase [Listeria monocytogenes FSL R2-503]
 gi|300513227|gb|EFK40306.1| sensor histidine kinase [Listeria monocytogenes FSL N1-017]
          Length = 459

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA  +     S        + + H++ SP+ ++     LL    + ++            
Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             RL  +        S+D    L   E V  D           W+  + +L+        
Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   A    P+GG + + + +        ++ +G      E   +
Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D              S  +       +   +   +  +   +        L K
Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLPK 458


>gi|46908753|ref|YP_015142.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47094035|ref|ZP_00231765.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|46882025|gb|AAT05319.1| sensor histidine kinase [Listeria monocytogenes serotype 4b str.
           F2365]
 gi|47017585|gb|EAL08388.1| sensor histidine kinase [Listeria monocytogenes str. 4b H7858]
 gi|328465185|gb|EGF36453.1| sensor histidine kinase [Listeria monocytogenes 1816]
          Length = 459

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 65/235 (27%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA  +     S        + + H++ SP+ ++     LL    + ++            
Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             RL  +        S+D    L   E V  D           W+  + +L+        
Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   A    P+GG + + + +        ++ +G      E   +
Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D              S  +       +   +   +  +   +        L K
Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLPK 458


>gi|332184941|ref|ZP_08386690.1| sensory box protein [Sphingomonas sp. S17]
 gi|332014665|gb|EGI56721.1| sensory box protein [Sphingomonas sp. S17]
          Length = 682

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
           + +       +  L A+  L   + HD  + +  I  S++LL       E  Q    +  
Sbjct: 311 LRQTEEQLRQAQKLEAIGQLTGGVAHDFNNLLTVIRGSIDLLRHADFPSERRQRQIDAIA 370

Query: 58  -------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R        +D    +  +  +I        R+ +        
Sbjct: 371 DAADRAAKLTAQLLAFARRQPLTPEVIDVGASIMTLTDMIHTLSGAGIRLVIERPETPCF 430

Query: 111 LSRERAKI---LLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPE 162
              +R+++   ++N+ + A  ++   G +TI +      D   +   ++   G      +
Sbjct: 431 AHVDRSQLDTAIVNMAVNARDAMAGQGTLTIRISSAIGPDGMEQVRIAITDTGEGI-PSD 489

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  QI +    +        +    V   A ++   +            + +L 
Sbjct: 490 RLDQIFEPFFTTKQLGAGTGLGLSQVFGFARQSGGDVQVVSQPGQGATFTLILP 543


>gi|222152393|ref|YP_002561568.1| sensor histidine kinase [Streptococcus uberis 0140J]
 gi|222113204|emb|CAR40674.1| sensor histidine kinase [Streptococcus uberis 0140J]
          Length = 351

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 69/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
           +++NI    + +       +   + + H++ +PI ++    +LL     E     E+  +
Sbjct: 115 LSQNINQMANDIKNADRHRSQFIANLSHELKTPISSLVGISDLLLTDSLEKDTRTELTTI 174

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTG 106
           ++  S+        +         +                 ++       K + + + G
Sbjct: 175 LQSESLRLSRLCDDILNLTKLENHLSPQLESVALDEQIRQALIMLTEKWKSKTIHLEFDG 234

Query: 107 EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160
           E +    +     ++ +N+   A         + + V+ + ++ + ++   G        
Sbjct: 235 EAVMCQTDPDLTMQVWVNVIDNAIKYSSDQVFLNVDVKQATDKVLVTISDKGIGIAKENQ 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F Q    +     + + +    V  +       +  E            L 
Sbjct: 295 RHIFEQFYQADQSHAQEGNGLGLAIVKKIIDSLNGSIHFESTPGQGSRFYITLP 348


>gi|209528424|ref|ZP_03276859.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
 gi|209491140|gb|EDZ91560.1| PAS/PAC sensor signal transduction histidine kinase [Arthrospira
           maxima CS-328]
          Length = 705

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 60/252 (23%), Gaps = 41/252 (16%)

Query: 3   KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           K     L      A           + + H++ +P+ AI    E+L E   E     ++ 
Sbjct: 421 KTAAEALERAKEAAETANRAKSTFLANMSHELRTPLNAIIGYSEILSEEAEELGYEDIVP 480

Query: 55  LSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              + ++    G +D  +   DI  ++E  +   + +       
Sbjct: 481 DLERIYTAGKNLLTLINDILDISKIEAGRMDLFLEAFDISSLLESVMGTAQPLMSKNNNT 540

Query: 108 KIDLSRER-----------AKILLNLFMVAHASLPRGGKVT--------ISVQDSKNENI 148
                 +             +ILLNL   A      G               Q+S +   
Sbjct: 541 LTVDCPDNIGIMYADVTKVRQILLNLLSNAAKFTTNGKIKLEVSRVSSLPYSQESGSVLE 600

Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202
           F +   G      E+  Q+                   +               +  E  
Sbjct: 601 FKVHDTGIGM-SQEQQEQLFQPFTQGDASTTRRYGGTGLGLAISDRFCQMMGGNIQVEST 659

Query: 203 DDHNVVLSALLE 214
                    ++ 
Sbjct: 660 LGEGSTFKVVIP 671


>gi|196231754|ref|ZP_03130611.1| histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196224226|gb|EDY18739.1| histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 550

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 62/231 (26%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       +    L AL  + S I HD  + + +I    ELL E     + ++ I  +  
Sbjct: 162 LRTTQAQVIKQERLAALGVMASGIAHDFNNTLSSILGYGELLLESPDHTDYLKRILSAGH 221

Query: 59  SAIIRLKFMRLAFGYTGS------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            A   ++ +R  +    +      V     +     +             +    K +  
Sbjct: 222 DARQIVRRLREFYKVGNTGEPLAAVHLNPLIDQAVTLTMPRWNNQALTWGAHITVKREFR 281

Query: 113 R---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     E  ++  NL   A  +LP GG++ I         +  +  +G        
Sbjct: 282 ELPILAGNPVELRELFTNLIFNAVDALPHGGQILIRTAVEGETIVVRVTDDGLGMDGDTA 341

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +             +       +   +K  +  E        +     
Sbjct: 342 RRCMEPFFTTKGEQGTGLGLSVAHGIVKRHKGTIHIETEPHVGTTVILRFP 392


>gi|220908951|ref|YP_002484262.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865562|gb|ACL45901.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1428

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 28/239 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
            ++       ++ +  L S I HD+ + +  I  S +LL      G   E+++++  ++  
Sbjct: 1051 ESQFLRAQRLESIGTLASGIAHDLNNMLTPILVSSQLLQRQLPEGRPQELLKIMEANARR 1110

Query: 60   AIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                ++ +             +     L +I+Q+ E       R+ +    +   +S + 
Sbjct: 1111 GADLIRQVLTFARGTEGKRMPLQIKHLLTEIQQICERTFPKSIRIALDIPADLAMISVDP 1170

Query: 116  ---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNL 157
                ++L+NL + A  ++P GG+                           + +++  G  
Sbjct: 1171 TQLHQVLMNLCVNARDAMPEGGQLNLRAADFYADQTYRQMNLEAQVGAYVVITVEDTGMG 1230

Query: 158  ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I D    +        +    V  +   +   +               L 
Sbjct: 1231 M-DSDVLERIFDPFFTTKGVGQGTGLGLSVVQGIIRSHSGFIKVNSSIGQGTQFQVYLP 1288


>gi|165871419|ref|ZP_02216067.1| putative sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|227812951|ref|YP_002812960.1| putative sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|254756049|ref|ZP_05208078.1| putative sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|164712903|gb|EDR18432.1| putative sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|227005510|gb|ACP15253.1| putative sensor histidine kinase [Bacillus anthracis str. CDC 684]
          Length = 337

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 95  LEKVRIKANRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 154

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L D    I       + +   
Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 274

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E I          + K
Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 331


>gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 1269

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 30/239 (12%)

Query: 4   NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53
            +      ++L     +   +   H+I +P+  I    E L +             ++LI
Sbjct: 578 ELARRTEQLELANKYKSEFLANTSHEIRTPLNGIIGLTESLIDGAAGPLNEKTMSNLELI 637

Query: 54  RLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------- 103
             S++         +  +      +       D   +++  + V + +            
Sbjct: 638 NSSAIRLSTLVNDILDFSRMENHELGIQRKPTDFYAIVDVVVRVSRELIGDKDLVLVNTI 697

Query: 104 --WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          +IL NL           G+VT+S + +      S+K  G     P
Sbjct: 698 GKDIPIIEGDENRLQQILYNLIGNGIKFTES-GQVTLSAKTTDAFLSVSVKDTGIGI-SP 755

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L   +   +  +            L 
Sbjct: 756 ESQDRIFESFEQEDGSTSRNYGGTGLGLAISKELVELHGGTIQLKSEVGKGSEFIFTLP 814


>gi|189425062|ref|YP_001952239.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
 gi|189421321|gb|ACD95719.1| multi-sensor signal transduction histidine kinase [Geobacter lovleyi
            SZ]
          Length = 1109

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 58/246 (23%), Gaps = 35/246 (14%)

Query: 2    AKNICFNLSSMDL---VALLC-----SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
             K     L    L    A L      + + H+I +P+  +     LL    +  E  Q +
Sbjct: 848  RKQSEQELIEAKLSADAANLAKSEFLANMSHEIRTPMNGVVGMTHLLRTTDLTPEQEQYL 907

Query: 54   RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
                +SA                      +        S    I       + +  I V 
Sbjct: 908  ANIEISANSLTTLISDILDLSKIESGKMVLESTAFSLRSCIQDILSSQQFFIQQKAIRVT 967

Query: 98   KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
              +        I       +ILLN+   A     +G        +   D       +++ 
Sbjct: 968  TEIADELPNTLIGDQLRTRQILLNILGNAIKFTEQGQINIVAELVEQHDRDIHVRMAIRD 1027

Query: 154  NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G      +   QI                   +       LA     R+  E  +    
Sbjct: 1028 TGIGM-SEQLQEQIFAPFVQADSSTTRRYGGSGLGLAICRRLADLMGGRIWVESREGAGS 1086

Query: 208  VLSALL 213
                 L
Sbjct: 1087 CFYIEL 1092


>gi|255025902|ref|ZP_05297888.1| hypothetical protein LmonocytFSL_05345 [Listeria monocytogenes FSL
           J2-003]
          Length = 459

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 64/232 (27%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINLDLADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P+ G + I + +        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISKVDMTKIFD 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458


>gi|227822197|ref|YP_002826168.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227341197|gb|ACP25415.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 861

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 81/241 (33%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60
           +N       M+ V  L   I HD  + + AI  S +  LL     +     L+ +   + 
Sbjct: 457 ENQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRNAN 516

Query: 61  II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        ++    +GD+  +++     + +V+V +  +   +  +
Sbjct: 517 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPVRTD 576

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156
                ++LLNL + A  ++P GG +T+  ++                 +  +  +   G 
Sbjct: 577 LGQFEQVLLNLAVNARDAMPDGGTITLRTRNLPAGDVAPLGRRELPEDDFVMVEVSDQGT 636

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +    V  +  ++   + P+           LL 
Sbjct: 637 GI-PAEIMDKIFEPFFTTKEVGKGTGLGLSMVYGIVKQSGGYIYPDSEVGKGTTFRILLP 695

Query: 215 K 215
           +
Sbjct: 696 R 696


>gi|207724848|ref|YP_002255245.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
 gi|206590073|emb|CAQ37034.1| composite two-component transcriptional regulatory protein (sensor
           histidine kinase and response regulator hybrid)
           [Ralstonia solanacearum MolK2]
          Length = 675

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL     ++ + +    +   + 
Sbjct: 287 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 344

Query: 62  I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                     + ++   +G V   I       + +  +   + +A  K++ +        
Sbjct: 345 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQIAIDTEYPPVP 404

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG + + VQ      + +++  G        P  
Sbjct: 405 LLQGDAGRLKQVFWNLLANAVKFTPEGGHIRVCVQALPEGLVATVRDTGIGIEPTFLPHV 464

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
           F +    +           +       L   +  R+       +    ++  L 
Sbjct: 465 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASNGANLGTTMAVTLP 518


>gi|160887157|ref|ZP_02068160.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483]
 gi|156107568|gb|EDO09313.1| hypothetical protein BACOVA_05173 [Bacteroides ovatus ATCC 8483]
          Length = 654

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 64/231 (27%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + + +     +  L +   + + H+I +P+ AI     +L   +      E   LI  ++
Sbjct: 421 LHEAMEKAEQANQLKSAFLANMSHEIRTPLNAIVGLSNMLPHVENREEMSEYADLIETNT 480

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWT 105
              +  +                Y   +D    L +IEQ ++  +  +      V+    
Sbjct: 481 DLLLQLINDILDLSKIEAGTFDFYPALIDVNQTLEEIEQSMQLRLRHNNVTFTFVERLPE 540

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N  + A      G               F +   G      E+  
Sbjct: 541 CTLYTDKNRLIQLLANFIVNAIKFTEVGTIRMGYRLLDSETIYFYVSDTGCGM-SSEQCI 599

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      S +    +       +      ++  E  ++        L 
Sbjct: 600 HVFERFVKYNSFVQGTGLGLSICHTIVDRLGGKIGVESKENKGATFWFTLP 650


>gi|150007327|ref|YP_001302070.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935751|gb|ABR42448.1| putative two-component regulator sensor kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 771

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 65/232 (28%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           A+        M L  +  + + H+I +P+ AI    +LL+     E   + E + LI  +
Sbjct: 532 ARRKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 589

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           S   +  +             M  ++        +  +    Q++       K       
Sbjct: 590 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 649

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++  N    A     +   ++   +       + S+K  G      +K 
Sbjct: 650 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 708

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +     +       +       + H     +  E       + +  L 
Sbjct: 709 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVGVGSMFTISLP 760


>gi|59712226|ref|YP_205002.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Vibrio fischeri ES114]
 gi|59480327|gb|AAW86114.1| hybrid sensory histidine kinase in two-component regulatory system
           with TorR [Vibrio fischeri ES114]
          Length = 972

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 56/235 (23%), Gaps = 26/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+++    +      L  + + H+I +P+  +  + ELL   G+  +  Q + + + S  
Sbjct: 459 ARDLAEQANRAKSAFL--ATMSHEIRTPLNGVLGTGELLRGSGLTAQQKQYVDIINRSGE 516

Query: 62  ------------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                   +     +   D         Q  +  I +   V V 
Sbjct: 517 NLLDLLNDILDYSKIEAGHLSIRKKNFSVQSMITDVHHLFSSRAQ--QKGITLSVNVPVD 574

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L N    A      G              +F +   G      E 
Sbjct: 575 TPEWWSGDCSRIRQVLNNFVGNAIKFTHTGSVTIQLSLILDTTLLFEVIDTGVGIAEHEI 634

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T                   +       L       +  E I+         LE
Sbjct: 635 DTLFDVFTQAEEGMKVSGGTGLGLAISQRLIEAMDGEIGVESIEGQGSTFWFSLE 689


>gi|78484534|ref|YP_390459.1| periplasmic sensor signal transduction histidine kinase
           [Thiomicrospira crunogena XCL-2]
 gi|78362820|gb|ABB40785.1| multi-sensor signal transduction histidine kinase [Thiomicrospira
           crunogena XCL-2]
          Length = 725

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIED------------- 47
           ++I   + +    A   +  R+ H+I +P+  I  S E L+    +              
Sbjct: 490 EDITQLVQAQLHAAWSDVAQRLAHEIKNPLTPIQLSAERLNYKLADKLISSDRRLLNRMT 549

Query: 48  -EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             +++ +           ++          ++    + D+  + +D  A  K    +   
Sbjct: 550 ETIIEQVAAMQNLVQAFTEYADTPEIELSQLNLNSLIKDVVSMYKDPNANWKVSYKTDPQ 609

Query: 107 EKIDLSR--ERAKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                +   +  ++L NL   A  +        + +    S++   FS+  NG       
Sbjct: 610 CPKITADASKLRQLLHNLIKNAIEACGERPETHIDVRTDCSQDAINFSICDNGPGIPEKA 669

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   I +           +    V  +  E++ ++  E   +        L 
Sbjct: 670 RNW-IFEPYSTDKPKGTGLGLAIVKKIVDEHQGQIHVESEPEQGTCFIINLP 720


>gi|77360565|ref|YP_340140.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76875476|emb|CAI86697.1| putative sensor protein [Pseudoalteromonas haloplanktis TAC125]
          Length = 1019

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 71/238 (29%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           + + I   L++    +   + I H+I +P+  +   LE+L E      +   ++L   S+
Sbjct: 501 LERAIDEALAASQAKSDFVANISHEIRTPMNGVLGMLEMLKEDGLSEQQHHYLKLANSSA 560

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104
            S +  +             + +       V     + +   +      ++  +      
Sbjct: 561 NSLMNLINDILDFSKIEAGKLDIDNHSFDVVTVCSDMINSLALQGQRKGLEVFLHTHNIV 620

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARF 160
               +  S    +IL+NL   A     +G       +  + D+K +  F++K  G     
Sbjct: 621 DRMVVGDSHRLKQILINLVNNAFKFTHKGEVSLTIGSKYITDTKLQMSFAVKDTGIGI-A 679

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            E   ++ +                 +       LA      +            +A 
Sbjct: 680 AENIDKLFEVFTQEDSSTTRHFGGTGLGLSICKKLAQLMGGNISLTSEKGVGSTFTAT 737


>gi|95929470|ref|ZP_01312213.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134586|gb|EAT16242.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 839

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 67/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54
           +     +  +  +  L + + H+I +P+  I   L+ L         +  +    ++ + 
Sbjct: 605 RTRLARMDRLASLGRLAAGLAHEIRNPLTGISLLLDDLHDRLLHTPKDQELIRRALEEME 664

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKID 110
                    LKF R++       D    +     + E          V        +   
Sbjct: 665 RLEGLVGDLLKFSRVSASECHPGDVRAVVERTLGLFEQSCERSGISLVRDYAETLPQIAL 724

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +   + LLNL   A  ++  GG +T+S+  +  +    +   G      E+   I + 
Sbjct: 725 DEQRMQQALLNLLRNAQEAMAEGGTLTVSLLANPEQVCVRVCDTGVGM-DDEQRRLIFEP 783

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 + + +    V  +  E+  R+                 
Sbjct: 784 FYTCKKEGNGLGLAIVHNIVAEHDGRIEVTSAPGQGSCFELCFP 827


>gi|260553331|ref|ZP_05825945.1| two-component sensor [Acinetobacter sp. RUH2624]
 gi|260405168|gb|EEW98666.1| two-component sensor [Acinetobacter sp. RUH2624]
          Length = 452

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78
            I H++ +P+  +   +E   D+  I     +               +      +   + 
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L  +  ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445


>gi|237728172|ref|ZP_04558653.1| conserved hypothetical protein [Citrobacter sp. 30_2]
 gi|226910183|gb|EEH96101.1| conserved hypothetical protein [Citrobacter sp. 30_2]
          Length = 754

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 71/232 (30%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SL+L++    +   +     ++     
Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLDLVNPESPDAPRVNRALKAAERGAL 445

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 446 LTQRLLAFSRKQSLHPHAVELKTLLENLGELMRHSLPATLTLEIEAQSPAWPAWIDVSQL 505

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++  +  +   G+     E   
Sbjct: 506 ENAIINLVMNARDAMDGQAGTIKIRTWNQRVTRSDGRKQDMVMLEVADQGSGM-SQEVKA 564

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616


>gi|220933386|ref|YP_002512285.1| PAS/PAC sensor signal transduction histidine kinase
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994696|gb|ACL71298.1| PAS/PAC sensor signal transduction histidine kinase
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 734

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 62/233 (26%), Gaps = 23/233 (9%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE--------------VGIED 47
           ++   L +    A   +  R+ H+I +P+  I  S E L                     
Sbjct: 486 DVTALLQAQRDAAWGEVARRLAHEIKNPLTPIQLSAERLQRKLKPSLPEDEARVLERSTH 545

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            ++Q +           ++          +D    + ++  +        +         
Sbjct: 546 TIVQQVEAMKSMVNAFSEYAHTPAVSVEPLDLNDLVREVADLYAGVGQRLRLHLADRLPP 605

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFP 161
            +  +    ++L NL      +L    +           +         ++ NG      
Sbjct: 606 VLADAGRMRQLLHNLIKNGLEALEGVPEPRLEVDTRCVREARCTVVELRVQDNGRGV-PE 664

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +++ +  V S      +    V  +  E+   +  E        +   L 
Sbjct: 665 DFMSRLFEPYVTSKPKGTGLGLAIVKKIVEEHNGMVWAENRASGGARIVIRLP 717


>gi|124003503|ref|ZP_01688352.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
 gi|123991072|gb|EAY30524.1| two-component system sensor histidine kinase/response regulator,
            hybrid, putative [Microscilla marina ATCC 23134]
          Length = 1356

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 2    AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
             +       +  L  L        S I H++ +P+  I    E L +   E+   +  + 
Sbjct: 819  QQKEEIASQAEKLKVLNQVQSNFFSGISHELRTPLTLIVEPAEKLLQYNQEEPGKRYTQT 878

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED------------FIAVDKRVQVS 103
               +A   L+ +     ++      + L      +                  +  ++++
Sbjct: 879  ILGNAQRLLRLINQLMDFSKLESGKMTLQLSNNSLYQLLVEVIASFELLAQQKNIELKLT 938

Query: 104  WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             + + +    +  K+   +F     A    P  G + + +  S +E   ++   G     
Sbjct: 939  ASNQALHYKFDHDKVEKVVFNLISNALKFTPTQGNIEVHLWQSPDEVKITVTDTGIGIAP 998

Query: 161  PE---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +  +        I    V  L   ++  +     ++          
Sbjct: 999  ADLPFVFDRFYQVDGSTTKNYPGTGIGLALVKELVELHEGSIEVTSQENKGSTFVVKFP 1057


>gi|189424609|ref|YP_001951786.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420868|gb|ACD95266.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 995

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 54/239 (22%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    + S     +   + + H+I +P+  +    ELL    +  E  Q +     S  
Sbjct: 608 AKQAAESASRAK--SEFLANMSHEIRTPMNGVLGMAELLAFTDLTAEQEQYLACIKSSGD 665

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +  A        + +    I  +    +     +     
Sbjct: 666 NLLALINDILDLSKIEAGKIELEYADFSLRKAINDVVTTQISAIHTKRLQFSCDLAEDLP 725

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161
              +       +ILLNL   A      G        I     ++    ++   G   +  
Sbjct: 726 EIVLGDQLRFKQILLNLLSNAIKFTDHGSVSISAELIECHSFQSFVRVTVADTGIGIQ-A 784

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    I                   +       LA      +  E            L 
Sbjct: 785 EARQTIFAPFTQADSSTTRRFGGTGLGLAISRQLAELMGGDIGLESEPGSGSRFYLDLP 843


>gi|116071025|ref|ZP_01468294.1| adaptive-response sensory kinase [Synechococcus sp. BL107]
 gi|116066430|gb|EAU72187.1| adaptive-response sensory kinase [Synechococcus sp. BL107]
          Length = 410

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 67/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + +     +  +     L   + H++ +P+ A   +L+         +   +    +L  
Sbjct: 159 LRQENETLIDRIHAQERLLRMVAHELRTPLTAAALALQSQRLGQIDMDRFQDVVTRRLEE 218

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           + ++S  +                     +    I ++ + ++  +  ++        + 
Sbjct: 219 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIRTDIPSDLPKV 278

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   +++LNL   A      GG + +S+   +      S+  +G      E+    
Sbjct: 279 FADQRRMRQVMLNLLENALKYTGNGGHIALSMLHRTNQWVEVSVCDSGPGIPNEEQQRIF 338

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++             +       +   +  R+      +     +  + 
Sbjct: 339 LDRVRLPQTSDRTTGFGVGLSVCRRIVEVHGGRIWVVSEPEEGACFTFTVP 389


>gi|91202233|emb|CAJ75293.1| very similar to histidine kinase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 542

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 63/244 (25%), Gaps = 32/244 (13%)

Query: 3   KNICFNLSSMDL--------VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           +    NL +  L             S + H++ +P+  I    +LL E        + +R
Sbjct: 149 RTSYKNLEAAKLLQEHANRAKTQFLSNMSHELRTPLNVIIGYTDLLSEQLPGKLNEKQLR 208

Query: 55  LSSMSA----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                              L   ++  G        + + ++   +   ++     +   
Sbjct: 209 YIGEINSSGKFLLSLINDLLDMSKIDAGAMELELEDVSIDELINGMVSMMSRQFVKKKIK 268

Query: 105 TGEK--------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKING 155
                       +   R+  +IL+NL   A    P+ G+V I      +      ++  G
Sbjct: 269 VKIIIEPELSVVMADLRKCKQILMNLLTNALKFTPKDGRVEICAVSDGDSGVKIEVRDTG 328

Query: 156 NLARFPEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +      +      +         I       L   +  ++  E          
Sbjct: 329 IGIAEDKIDKIFSEFYQAENVIDEQLGGTGIGLALTRRLVELHDGKIGVESKLGKGSTFW 388

Query: 211 ALLE 214
             L 
Sbjct: 389 FTLP 392


>gi|302036924|ref|YP_003797246.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604988|emb|CBK41321.1| putative Histidine kinase, contains GAF domain [Candidatus
           Nitrospira defluvii]
          Length = 426

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
           + ++      +  L +L  +     H+I +P+ +I   ++L  +   +   ++       
Sbjct: 176 LRRSSTLMRRTDRLRSLEIMAGGFAHEIRNPLTSIKTFIQLAPQRQQDPVFIREFSQVAI 235

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
                        L +          VD    +      V         R++ +   +  
Sbjct: 236 EDVHRIERLLHEILDYASYMTPQPSDVDLNELVTSCLGFVSSTASHRGIRLRTTLAPQLP 295

Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARF 160
                 ++  ++LLNL + A  ++P G  V                    ++  G     
Sbjct: 296 TLSLDRQQIKQVLLNLLLNALDAMPNGNGVIQIRTRMLPLTGRTPWVQLEVEDEGCGI-A 354

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P+    I D    +       D   +       +  E+   LL E         S  L 
Sbjct: 355 PDHLEHIFDPFFTTKHTNSASDGSGLGLTTAHQIVREHGGTLLVESRVGAGSTFSVNLP 413


>gi|149917104|ref|ZP_01905604.1| serine/threonine kinase with two-component sensor domain
            [Plesiocystis pacifica SIR-1]
 gi|149822020|gb|EDM81413.1| serine/threonine kinase with two-component sensor domain
            [Plesiocystis pacifica SIR-1]
          Length = 1824

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 65/242 (26%), Gaps = 30/242 (12%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
             K +   +  +  L +L  L + + H+I +PI  +    EL+ +       +        
Sbjct: 1571 RKRLEQQVRQNQRLESLGTLAAGVAHEINNPIQGVMGYAELILDEARGQPAITEFATEIT 1630

Query: 57   ------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI- 109
                         L F R          +   + D    +   +     V+++       
Sbjct: 1631 GESKRVMHIVRDLLTFSRQEREPDHERIAPQRIIDSTLPLVRTLMRKDGVELTVDVSPEL 1690

Query: 110  ----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----------KNENIFSLKIN 154
                   ++  ++++NL   A  +L          +             +    F ++  
Sbjct: 1691 PALSCHPQQIRQVIMNLLTNARDALNDRFGGEHPDKRITIRAAEVDEGGRRWIRFEVEDR 1750

Query: 155  GNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G          +I D    +        +       +A E+  +L  +           L
Sbjct: 1751 GGGI-PDAVRDRIFDPFFTTKPRDRGTGLGLSVSHGIAVEHGGQLGLDSEPGVGTTFHLL 1809

Query: 213  LE 214
            L 
Sbjct: 1810 LP 1811


>gi|187921316|ref|YP_001890348.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia phytofirmans PsJN]
 gi|187719754|gb|ACD20977.1| integral membrane sensor signal transduction histidine kinase
           [Burkholderia phytofirmans PsJN]
          Length = 658

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 70/232 (30%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEV------M 50
           +  N     +       L + + H+I  P+GAI ++ +    +L     ++         
Sbjct: 394 LRSNELARAARFASAGELSASVAHEIGQPLGAILSNADAAGLMLRNEPEDELHAILADIR 453

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKI 109
           +    ++         ++        +D      +   ++  +       V+ ++  +  
Sbjct: 454 RDALRANQVVQRLRALLQKRTFEYVPLDLNGAFDEGLALLNLEARRRRIAVESNFAAQNA 513

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFSLKINGNLARFPE 162
            +  +R ++   L  +   ++    +         IS Q +       +  +G+     +
Sbjct: 514 CVLGDRVQLQQVLINLVINAMDAMEETPLGERIVSISTQLAGKGYQLIVADSGHG-FPAD 572

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ D    +      +    V  +   +  ++     D    V +  L 
Sbjct: 573 AGERMFDSLYTTKPHGMGLGLSIVRTIVSTHGGQVRGASRDGGGSVFTVWLP 624


>gi|303247129|ref|ZP_07333404.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302491555|gb|EFL51440.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 648

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 68/244 (27%), Gaps = 32/244 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +    +   M+++  L S I HD+ + +G I    EL    L+    + E ++ I  +  
Sbjct: 262 EKQLRHAQKMEVIGTLASGIAHDLRNILGPIILHAELCLERLEAGDPQAESLREIVEAVG 321

Query: 59  SAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            A    + +      +             + +  + +   +     +++     + ++  
Sbjct: 322 RARALGEQLLSLGRSVESDTPVRFRLSTLVKECLKFLAPGLPPGLSIRLRIEAARSEMRG 381

Query: 114 ER---AKILLNLFMVAHASLPRG-----------------GKVTISVQDSKNENIFSLKI 153
           +     ++++NL   A  ++                         S           +  
Sbjct: 382 DPTRGHQVIMNLLTNAIEAMKDQEGGLLTVRIEDAVVTEGDWSEESSLPPGAYLRLCVSD 441

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      +   +I +    +  +     +       +  + +  +  E           
Sbjct: 442 TGQGM-TSDVMKRIFEPFFSTKREGHGTGLGLTVARHIVTQMRGAISVESHPGLGTSFRV 500

Query: 212 LLEK 215
           L  K
Sbjct: 501 LFPK 504


>gi|297570337|ref|YP_003691681.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926252|gb|ADH87062.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 533

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 67/231 (29%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       +    L ++  L S + H+I++P+  I   ++++    + + + + +    +
Sbjct: 279 LRSAQNVLVRQEKLASIGTLASGVAHEILNPLNIIGTIVQVMQMEELPEIISEQLDEVMV 338

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGE 107
                         F          +D    L +  ++++          ++        
Sbjct: 339 QIRRATKITNSLRMFSHRGKAEIEELDIHALLDNTLELVKHSLADDHIEVEKKYTPGLPA 398

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFT 165
                 + A++LLNL   A  ++       +  + +  +     ++   G     PE   
Sbjct: 399 IAADPDQLAQVLLNLINNARDAMRGRPTRRLSLTTRRVEQGVGLTVSDTGWGI-APEHLH 457

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +        +    V  +       +              +L 
Sbjct: 458 KIFDPFFTTKDPGSGTGMGLAVVYSIVEGMGGMIEVASRPGRGTDFFMVLP 508


>gi|253701498|ref|YP_003022687.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776348|gb|ACT18929.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 849

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +        M+ V  L   + HD  + +  I  + EL    L E    D  +++I  ++ 
Sbjct: 469 EEQYRQSQKMESVGRLAGGVAHDFNNMLSVILGAAELSRRKLKEGEQIDAYLEVITNAAK 528

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        +D    + +  +++   I+ D  +  +       +S +
Sbjct: 529 RSSEITRQLLAFSRKEVVSPRPLDLNQLILESNKILARLISEDIELSFTPDPGLWTVSID 588

Query: 115 RAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
            +++   L      A  ++P                          S +    ++   G 
Sbjct: 589 PSQVDQILMNLAVNARDAMPNGGRLSIETRNLRLTGDCSQIHPDAHSGDYVQLTVSDTGQ 648

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     I +    +        +    V  +  +N+  +          V    L 
Sbjct: 649 GMDKATV-EHIFEPFFTTKELGKGTGLGLATVYGIVTQNRGFINVYSEPGQGTVFRINLP 707

Query: 215 K 215
           +
Sbjct: 708 R 708


>gi|229080731|ref|ZP_04213249.1| hypothetical protein bcere0023_33750 [Bacillus cereus Rock4-2]
 gi|228702465|gb|EEL54933.1| hypothetical protein bcere0023_33750 [Bacillus cereus Rock4-2]
          Length = 382

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58
           K          + + L + I H+I +P+  +H   +LL+E       +D+ ++++ +   
Sbjct: 160 KEKLQRAEKFYIASELAASIAHEIHNPLTTVHGFTQLLNEKHASKLSQDQYLEIMLIEMQ 219

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111
                +           ++   I +  I   ++D          V+ +   + +      
Sbjct: 220 QIQSTINNYLSLTKPQNTLKEKIDINHILNQVKDTISPLALSYKVEIKQNSTDSFYINGD 279

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +    L N+      ++  GG + I++Q  K   +  +  +G      +   +I    
Sbjct: 280 PEKFKLCLNNIIQNGIEAMKNGGLLQINIQKVKGNIMIDIIDSGIGMSSQQIK-RIALPF 338

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +T     +       +  E    +  E         S  + 
Sbjct: 339 YSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTRFSISIP 381


>gi|229104177|ref|ZP_04234849.1| hypothetical protein bcere0019_33250 [Bacillus cereus Rock3-28]
 gi|228679194|gb|EEL33399.1| hypothetical protein bcere0019_33250 [Bacillus cereus Rock3-28]
          Length = 516

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEENKWYVDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       + +    + ++   ++   I     + +     K D+
Sbjct: 341 ISQMESITSQFMAMSKPQVLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDI 400

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167
             +  ++      +   ++                  N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506


>gi|229188542|ref|ZP_04315582.1| hypothetical protein bcere0002_2380 [Bacillus cereus ATCC 10876]
 gi|228594936|gb|EEK52715.1| hypothetical protein bcere0002_2380 [Bacillus cereus ATCC 10876]
          Length = 314

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + +       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 72  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++  E    +   G      + 
Sbjct: 192 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E            + K
Sbjct: 252 QNIFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308


>gi|220904125|ref|YP_002479437.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
 gi|219868424|gb|ACL48759.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
           str. ATCC 27774]
          Length = 528

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54
           M KN         +   V++  + + I H+I +P+G I +S ELL      +    +++ 
Sbjct: 291 MNKNRQLEKQLHSNERFVSMGRVIASIAHEIRNPLGIIRSSAELLQRRSDADAGTRRILG 350

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSW 104
                ++   + +     Y         L D            +       V        
Sbjct: 351 AIFDESVRLSQTVNDFLDYARPRQPKQDLVDISLVLDQVLGFLEGDMGRRNVALERNTEE 410

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163
                       +   N+ +    ++   G + IS               +G        
Sbjct: 411 GLFVHGDKDLLYRAFYNILVNGQQAMDGPGVLHISGVHDGEGHVRLEFLDSGPGFDAS-V 469

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++D    +      +    V  +   +   +  E   +   ++  LL 
Sbjct: 470 LANLLDPFFTTKDGGTGLGLPIVQSIITSHGGVIQLENGPEGGALVRVLLP 520


>gi|58580321|ref|YP_199337.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188578743|ref|YP_001915672.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|58424915|gb|AAW73952.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188523195|gb|ACD61140.1| sensor histidine kinase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 678

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         +  +  L     + + H++ +P+  I    ELL    +E     + + +I
Sbjct: 282 LESERSARNEAESMARLKDEFLATLSHELRTPLTTILGWSELLLQRVEEGHTTYKGLSVI 341

Query: 54  RLSSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+ +    +  M                    +      L   E   E    + +   
Sbjct: 342 ASSARAQKRLISDMLDLSSMLLGKVQLEVESLDLAEQVREALNTQELAAEGKDQILELHV 401

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    +++ NL   A    P  G++ +S++      + S+  +G+     
Sbjct: 402 PPTPCLVLGDATRLQQVVWNLLSNAIKFTPAHGRIDVSIERDDGHLVVSVCDSGDGIAAE 461

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                    +  DG          +    V  L   +  ++             +  L 
Sbjct: 462 FLPHLFGRFRQADGTTTRQHGGLGLGLAIVQQLVEMHGGQVGATSGGRGKGATFTVRLP 520


>gi|78042982|ref|YP_359782.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995097|gb|ABB13996.1| sensory box histidine kinase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 406

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 19/211 (9%), Positives = 55/211 (26%), Gaps = 15/211 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + +   H+I +P+  +   ++LL +           +  +          +  + +    
Sbjct: 181 IATGTAHEIRNPLTTVKGFIQLLGQEKLNDPESKVFLNTVLQEINRIEKIISELLILGSD 240

Query: 74  TGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF---MV 125
            G   +   L  +               +  +  +   E      +   + L +      
Sbjct: 241 KGLKKTFFNLNYLIEKVVENFTPTAYLNNISIVKNLAKELPLFYGDEESLYLAITSILNN 300

Query: 126 AHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
           A  +L +     +    +   NE    +  NG      E  ++I +    +  +   +  
Sbjct: 301 AFEALQKDGVIVIETFYEHGSNEIGLRIADNGPGI-PEELRSKIFEPFFTTKPEGTGLGL 359

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   E+   +     +         L 
Sbjct: 360 AICYRTIEEHGGEIRVYNNETGGATFEITLP 390


>gi|83952335|ref|ZP_00961066.1| putative two-component sensor histidine kinase protein [Roseovarius
           nubinhibens ISM]
 gi|83836008|gb|EAP75306.1| putative two-component sensor histidine kinase protein [Roseovarius
           nubinhibens ISM]
          Length = 623

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 73/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEV----- 49
           + +     + +  L AL  + + + H+   P+ A+    E    L++    E+       
Sbjct: 376 LRRTQSELVQAGKLAALGQMSAGLSHEFNQPLAAVKAYAENALTLMERGRQEEARSNMGL 435

Query: 50  -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104
            +Q+    +  +     F R      G V  +  L D+  ++++ I   +          
Sbjct: 436 ILQMADRMAAISRHLRNFARRPQEKIGPVPLIPVLEDVLSLMDNRIKAAEARITIDRPEG 495

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFP 161
               +       ++L+NL   A  ++       I ++ +       I  ++ +G      
Sbjct: 496 DIFVMGGQVRLQQVLVNLLANALDAMETQPAPEIGIRVAGLDSGRWIVEVRDHGEGL-TD 554

Query: 162 EKFTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   Q+ D    +      +         +  +    L      +   + +  L
Sbjct: 555 DTMAQLFDPFFTTKSPGKGLGLGLSISYNIVRDFGGTLSARNHPEGGAIFAVEL 608


>gi|186681490|ref|YP_001864686.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
 gi|4336932|gb|AAD18016.1| histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463942|gb|ACC79743.1| integral membrane sensor signal transduction histidine kinase HepK
           [Nostoc punctiforme PCC 73102]
          Length = 574

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/247 (8%), Positives = 67/247 (27%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53
           + +      ++    ++  + + H++ +P+ A+    +LL++   +          ++ I
Sbjct: 324 LQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLEDDATDLGLSADFITDLETI 383

Query: 54  RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVSW 104
             +    +  +                Y  + +    + ++   ++  I  +  V +V +
Sbjct: 384 NSAGKHLLHLINEILDLSKIEAGKMTLYPETFEIATLINNVVLTVKPAIEKNANVLEVHF 443

Query: 105 TGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKI 153
             +            ++LLNL   A      G       ++ +            F++  
Sbjct: 444 DEQLGTMYADQTRMRQVLLNLLSNASKFTTNGKVTLTVKREKEELRLDAPLGMITFTVTD 503

Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G      +   Q+                   +               ++ +       
Sbjct: 504 TGIGMSNRQ-QQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEIIVKSQPGLGS 562

Query: 208 VLSALLE 214
             +  L 
Sbjct: 563 TFTIRLP 569


>gi|328952707|ref|YP_004370041.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453031|gb|AEB08860.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 759

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 74/235 (31%), Gaps = 25/235 (10%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----------EVGIEDEVM 50
           +    L    + +L  L + + H+I +P+  I N ++L+            E     E +
Sbjct: 520 SRARMLHDDKMTSLGKLSASVVHEINNPMTGIMNLVKLMQRIMGKGLLSETESAKMHEYL 579

Query: 51  QLIRLSSMSAI----IRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWT 105
            LI   +          L F R        V    +    +             V   + 
Sbjct: 580 DLIYGETSRVSKTVSNLLAFSRKTSPEFKPVGLNALLTETLTLTEYQLRLQGITVNCQFD 639

Query: 106 GEKID---LSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFP 161
            + +       +  ++ LNL + A  ++P GG +T  +    +   +  +   G      
Sbjct: 640 PDLMPVLADPEQMKQVFLNLILNARDAMPDGGVLTLKTKNYRRPGVMVQIADTGIGI-PK 698

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           EK++ I +    +        +    V  +  E+K  +  + I       +  L 
Sbjct: 699 EKYSSIFEPFYTTKKAGSGAGLGLSVVYGIIQEHKGTIKVDSIVGQGTTFTIRLP 753


>gi|326409060|gb|ADZ66125.1| sensory box histidine kinase/response regulator [Brucella
           melitensis M28]
 gi|326538767|gb|ADZ86982.1| PAS domain S-box-containing protein [Brucella melitensis M5-90]
          Length = 906

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755

Query: 215 K 215
           +
Sbjct: 756 R 756


>gi|306838397|ref|ZP_07471242.1| PAS domain-containing protein [Brucella sp. NF 2653]
 gi|306406537|gb|EFM62771.1| PAS domain-containing protein [Brucella sp. NF 2653]
          Length = 857

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 468 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 527

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 528 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 587

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 588 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 647

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 648 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 706

Query: 215 K 215
           +
Sbjct: 707 R 707


>gi|306840523|ref|ZP_07473282.1| PAS domain-containing protein [Brucella sp. BO2]
 gi|306289538|gb|EFM60756.1| PAS domain-containing protein [Brucella sp. BO2]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|306843910|ref|ZP_07476505.1| PAS domain-containing protein [Brucella sp. BO1]
 gi|306275665|gb|EFM57389.1| PAS domain-containing protein [Brucella sp. BO1]
          Length = 857

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 468 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 527

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 528 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 587

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 588 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 647

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 648 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 706

Query: 215 K 215
           +
Sbjct: 707 R 707


>gi|297248360|ref|ZP_06932078.1| sensory box histidine kinase/response regulator [Brucella abortus
           bv. 5 str. B3196]
 gi|297175529|gb|EFH34876.1| sensory box histidine kinase/response regulator [Brucella abortus
           bv. 5 str. B3196]
          Length = 945

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 556 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 615

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 616 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 675

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 676 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 735

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 736 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 794

Query: 215 K 215
           +
Sbjct: 795 R 795


>gi|294852372|ref|ZP_06793045.1| two-component sensor histidine kinase [Brucella sp. NVSL 07-0026]
 gi|294820961|gb|EFG37960.1| two-component sensor histidine kinase [Brucella sp. NVSL 07-0026]
          Length = 843

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 454 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 513

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 514 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 573

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 574 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 633

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 634 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 692

Query: 215 K 215
           +
Sbjct: 693 R 693


>gi|268611926|ref|ZP_06145653.1| two-component system, OmpR family, sensor histidine kinase KdpD
           [Ruminococcus flavefaciens FD-1]
          Length = 371

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 73/235 (31%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +       +  L A +   I HD+ +P+ +I  +        + LDE   +     +  
Sbjct: 130 KEEAALLAQNEQLRANMLRSISHDLRTPLTSISGNASTLLSGGDTLDESARQQIYTDIYS 189

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWT 105
            S     +    +       G +   I +  ++ ++++ +   +R           +   
Sbjct: 190 ESMWLIGMVENLLYATRIEDGRMQLNISVEILDDIVQEAVRHTERTHSKRNIIVDMLDEI 249

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +  +    ++++NL   A         VT+SV+      + S+  +G      E+  
Sbjct: 250 IPVMADANLIVQVIVNLMDNAVKYSDDDSDVTVSVRREHAYAVISVSDHGTGI-SDEEKE 308

Query: 166 QIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D        S        +       +   +   +       +  V+S  L 
Sbjct: 309 KVFDMFYTGGSRSSDSRRSLGLGLALCRSIISSHGGTISVSDNIPNGTVVSFTLP 363


>gi|265984104|ref|ZP_06096839.1| multi-sensor hybrid histidine kinase [Brucella sp. 83/13]
 gi|264662696|gb|EEZ32957.1| multi-sensor hybrid histidine kinase [Brucella sp. 83/13]
          Length = 911

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 522 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 581

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 582 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 641

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 642 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 701

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 702 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 760

Query: 215 K 215
           +
Sbjct: 761 R 761


>gi|265988706|ref|ZP_06101263.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis
           M292/94/1]
 gi|264660903|gb|EEZ31164.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis
           M292/94/1]
          Length = 891

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 502 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 561

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 562 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 621

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 622 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 681

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 682 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 740

Query: 215 K 215
           +
Sbjct: 741 R 741


>gi|261752341|ref|ZP_05996050.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 5 str. 513]
 gi|261742094|gb|EEY30020.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 5 str. 513]
          Length = 906

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755

Query: 215 K 215
           +
Sbjct: 756 R 756


>gi|261758225|ref|ZP_06001934.1| sensory box histidine kinase/response regulator [Brucella sp.
           F5/99]
 gi|261738209|gb|EEY26205.1| sensory box histidine kinase/response regulator [Brucella sp.
           F5/99]
          Length = 891

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 502 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 561

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 562 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 621

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 622 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 681

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 682 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 740

Query: 215 K 215
           +
Sbjct: 741 R 741


>gi|261314235|ref|ZP_05953432.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis
           M163/99/10]
 gi|261303261|gb|EEY06758.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis
           M163/99/10]
          Length = 857

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 468 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 527

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 528 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 587

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 588 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 647

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 648 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 706

Query: 215 K 215
           +
Sbjct: 707 R 707


>gi|261317672|ref|ZP_05956869.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis B2/94]
 gi|261296895|gb|EEY00392.1| multi-sensor hybrid histidine kinase [Brucella pinnipedialis B2/94]
          Length = 657

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 268 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 327

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 328 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 387

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 388 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 447

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 448 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 506

Query: 215 K 215
           +
Sbjct: 507 R 507


>gi|261218622|ref|ZP_05932903.1| multi-sensor hybrid histidine kinase [Brucella ceti M13/05/1]
 gi|260923711|gb|EEX90279.1| multi-sensor hybrid histidine kinase [Brucella ceti M13/05/1]
          Length = 657

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 268 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 327

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 328 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 387

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 388 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 447

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 448 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 506

Query: 215 K 215
           +
Sbjct: 507 R 507


>gi|261214026|ref|ZP_05928307.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 3 str.
           Tulya]
 gi|260915633|gb|EEX82494.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 3 str.
           Tulya]
          Length = 906

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755

Query: 215 K 215
           +
Sbjct: 756 R 756


>gi|260754774|ref|ZP_05867122.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 6 str.
           870]
 gi|260883793|ref|ZP_05895407.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 9 str.
           C68]
 gi|260674882|gb|EEX61703.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 6 str.
           870]
 gi|260873321|gb|EEX80390.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 9 str.
           C68]
          Length = 906

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755

Query: 215 K 215
           +
Sbjct: 756 R 756


>gi|260757997|ref|ZP_05870345.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 4 str.
           292]
 gi|261222207|ref|ZP_05936488.1| multi-sensor hybrid histidine kinase [Brucella ceti B1/94]
 gi|261321880|ref|ZP_05961077.1| multi-sensor hybrid histidine kinase [Brucella ceti M644/93/1]
 gi|261755000|ref|ZP_05998709.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 3 str. 686]
 gi|265991120|ref|ZP_06103677.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260668315|gb|EEX55255.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 4 str.
           292]
 gi|260920791|gb|EEX87444.1| multi-sensor hybrid histidine kinase [Brucella ceti B1/94]
 gi|261294570|gb|EEX98066.1| multi-sensor hybrid histidine kinase [Brucella ceti M644/93/1]
 gi|261744753|gb|EEY32679.1| multi-sensor hybrid histidine kinase [Brucella suis bv. 3 str. 686]
 gi|263001904|gb|EEZ14479.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 891

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 502 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 561

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 562 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 621

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 622 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 681

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 682 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 740

Query: 215 K 215
           +
Sbjct: 741 R 741


>gi|260168745|ref|ZP_05755556.1| PAS domain-containing protein [Brucella sp. F5/99]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|260566424|ref|ZP_05836894.1| sensory box histidine kinase/response regulator [Brucella suis bv.
           4 str. 40]
 gi|260155942|gb|EEW91022.1| sensory box histidine kinase/response regulator [Brucella suis bv.
           4 str. 40]
          Length = 891

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 502 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 561

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 562 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 621

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 622 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 681

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 682 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 740

Query: 215 K 215
           +
Sbjct: 741 R 741


>gi|260545291|ref|ZP_05821032.1| sensory box histidine kinase/response regulator [Brucella abortus
           NCTC 8038]
 gi|260564042|ref|ZP_05834528.1| sensory box histidine kinase/response regulator [Brucella
           melitensis bv. 1 str. 16M]
 gi|260761820|ref|ZP_05874163.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261325131|ref|ZP_05964328.1| multi-sensor hybrid histidine kinase [Brucella neotomae 5K33]
 gi|265994957|ref|ZP_06107514.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 3
           str. Ether]
 gi|265998171|ref|ZP_06110728.1| multi-sensor hybrid histidine kinase [Brucella ceti M490/95/1]
 gi|265999465|ref|ZP_05466499.2| sensory box histidine kinase/response regulator [Brucella
           melitensis bv. 2 str. 63/9]
 gi|260096698|gb|EEW80573.1| sensory box histidine kinase/response regulator [Brucella abortus
           NCTC 8038]
 gi|260154058|gb|EEW89150.1| sensory box histidine kinase/response regulator [Brucella
           melitensis bv. 1 str. 16M]
 gi|260672252|gb|EEX59073.1| multi-sensor hybrid histidine kinase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|261301111|gb|EEY04608.1| multi-sensor hybrid histidine kinase [Brucella neotomae 5K33]
 gi|262552639|gb|EEZ08629.1| multi-sensor hybrid histidine kinase [Brucella ceti M490/95/1]
 gi|262766070|gb|EEZ11859.1| multi-sensor hybrid histidine kinase [Brucella melitensis bv. 3
           str. Ether]
 gi|263094112|gb|EEZ18034.1| sensory box histidine kinase/response regulator [Brucella
           melitensis bv. 2 str. 63/9]
          Length = 906

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 517 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 576

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 577 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 636

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 637 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 696

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 697 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 755

Query: 215 K 215
           +
Sbjct: 756 R 756


>gi|256031617|ref|ZP_05445231.1| PAS domain-containing protein [Brucella pinnipedialis M292/94/1]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|254719113|ref|ZP_05180924.1| PAS domain-containing protein [Brucella sp. 83/13]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|254716821|ref|ZP_05178632.1| PAS domain-containing protein [Brucella ceti M13/05/1]
          Length = 664

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 275 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 334

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 335 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 394

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 395 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 454

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 455 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 513

Query: 215 K 215
           +
Sbjct: 514 R 514


>gi|254710122|ref|ZP_05171933.1| PAS domain-containing protein [Brucella pinnipedialis B2/94]
          Length = 667

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 278 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 337

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 338 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 397

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 398 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 457

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 458 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 516

Query: 215 K 215
           +
Sbjct: 517 R 517


>gi|254701787|ref|ZP_05163615.1| PAS domain-containing protein [Brucella suis bv. 5 str. 513]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|254693752|ref|ZP_05155580.1| PAS domain-containing protein [Brucella abortus bv. 3 str. Tulya]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|254689267|ref|ZP_05152521.1| PAS domain-containing protein [Brucella abortus bv. 6 str. 870]
 gi|256257517|ref|ZP_05463053.1| PAS domain-containing protein [Brucella abortus bv. 9 str. C68]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|225627514|ref|ZP_03785551.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
 gi|225617519|gb|EEH14564.1| PAS domain S-box-containing protein [Brucella ceti str. Cudo]
          Length = 945

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 556 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 615

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 616 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 675

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 676 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 735

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 736 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 794

Query: 215 K 215
           +
Sbjct: 795 R 795


>gi|253701693|ref|YP_003022882.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
 gi|251776543|gb|ACT19124.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M21]
          Length = 659

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 77/241 (31%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
           + +     + S  +  L  + S   H++ +P+  I  ++++L +  +   +         
Sbjct: 410 LKEAQAKLIQSEKMATLGEVISGASHELNNPLAGILGAIQMLRKSALAQPIEPELLEGID 469

Query: 50  -MQLIRLSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVS 103
            ++ I  +++         ++F   A      +D    L D  +++   F  +  +V++ 
Sbjct: 470 VLESIESAAIRCQNIVADLIRFSTQAHCNFSEIDINQVLRDTLEIMAAPFADLGIQVELD 529

Query: 104 WTGEKIDLSRERAK---ILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKING 155
                  +  +  K   + ++L   A  +LP GG +      +       +   +++  G
Sbjct: 530 SDPAVPLIEGDFVKLLEVYVSLLRNAQNALPDGGTIYLGTKVVKNYGEPPQVAVTIRDTG 589

Query: 156 NLARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I D    +        +       +   +   +           ++  +
Sbjct: 590 CGIPPQNLS-KIFDPFFTTKPVGRGPGLGLTVSYGIVKRHGGDIDVRSTVGKGTEVTVTV 648

Query: 214 E 214
            
Sbjct: 649 P 649


>gi|182415942|ref|YP_001821008.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177843156|gb|ACB77408.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 711

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 69/233 (29%), Gaps = 29/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
             M+ +  L + I HD  + +  I  +     E L+      E+++ +  ++  +   + 
Sbjct: 335 QKMEAIGELAAGIAHDFNNMLTVIQGNTSIVRERLERHSPHHELLETVASAAERSAKLVN 394

Query: 66  FMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            +             +        L D+   +       + +  + +      +    ++
Sbjct: 395 QLLTFSRKQVLEVQPVEAGKLLGTLRDMLSRVIGEQITVRVLPPTASLAISADAGMIEQM 454

Query: 119 LLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L+NL + A  ++P                    +       +   FS+  NG+    PE 
Sbjct: 455 LMNLAINARDAMPDGGTLTIGATAVNITPAHAASNPEARPGSFLCFSVADNGHGI-APEV 513

Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +        +    V  +  +++  +  +            L 
Sbjct: 514 LPRIFDPFFTTKPTGQGTGLGLATVYGIIKQHEGWIEVQSAIGQGTTFRVFLP 566


>gi|167571892|ref|ZP_02364766.1| two-component system sensor protein [Burkholderia oklahomensis
           C6786]
          Length = 925

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 59/247 (23%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    +     + 
Sbjct: 422 LRKESELKLEEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSMRQSER 481

Query: 53  IRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---- 97
           +++    +   L                        D    L DI               
Sbjct: 482 LQVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQDIVDAYAPLAESKGLEL 541

Query: 98  -KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
              V                +IL NL   A      G       +       +     + 
Sbjct: 542 FSSVGEGIANYYSGDPARIHQILSNLIGNAIKFTDSGHISIDVHRAKTGPGNSAIEIWVS 601

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   +     T        D ++        +       LA      +  + + +   
Sbjct: 602 DTGIGIQPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLATIMGGSIEIDSLPEFGT 661

Query: 208 VLSALLE 214
            ++ +L 
Sbjct: 662 TVTVVLP 668


>gi|163843307|ref|YP_001627711.1| PAS domain-containing protein [Brucella suis ATCC 23445]
 gi|189024203|ref|YP_001934971.1| sensory box histidine kinase/response regulator [Brucella abortus
           S19]
 gi|225852542|ref|YP_002732775.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|237815464|ref|ZP_04594462.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
 gi|254697403|ref|ZP_05159231.1| PAS domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254704329|ref|ZP_05166157.1| PAS domain-containing protein [Brucella suis bv. 3 str. 686]
 gi|254706771|ref|ZP_05168599.1| PAS domain-containing protein [Brucella pinnipedialis M163/99/10]
 gi|254714121|ref|ZP_05175932.1| PAS domain-containing protein [Brucella ceti M644/93/1]
 gi|254730301|ref|ZP_05188879.1| PAS domain-containing protein [Brucella abortus bv. 4 str. 292]
 gi|256044696|ref|ZP_05447600.1| PAS domain-containing protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256061128|ref|ZP_05451282.1| PAS domain-containing protein [Brucella neotomae 5K33]
 gi|256113590|ref|ZP_05454410.1| PAS domain-containing protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256159755|ref|ZP_05457502.1| PAS domain-containing protein [Brucella ceti M490/95/1]
 gi|256255017|ref|ZP_05460553.1| PAS domain-containing protein [Brucella ceti B1/94]
 gi|163674030|gb|ABY38141.1| PAS domain S-box [Brucella suis ATCC 23445]
 gi|189019775|gb|ACD72497.1| sensory box histidine kinase/response regulator [Brucella abortus
           S19]
 gi|225640907|gb|ACO00821.1| PAS domain S-box-containing protein [Brucella melitensis ATCC
           23457]
 gi|237790301|gb|EEP64511.1| PAS domain S-box-containing protein [Brucella abortus str. 2308 A]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|161618989|ref|YP_001592876.1| PAS domain-containing protein [Brucella canis ATCC 23365]
 gi|161335800|gb|ABX62105.1| PAS domain S-box [Brucella canis ATCC 23365]
          Length = 898

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 509 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 568

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 569 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 628

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 629 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 688

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 689 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 747

Query: 215 K 215
           +
Sbjct: 748 R 748


>gi|23501918|ref|NP_698045.1| sensory box histidine kinase/response regulator [Brucella suis
           1330]
 gi|62289961|ref|YP_221754.1| sensory box histidine kinase/response regulator [Brucella abortus
           bv. 1 str. 9-941]
 gi|256369463|ref|YP_003106971.1| sensory box histidine kinase/response regulator [Brucella microti
           CCM 4915]
 gi|23347861|gb|AAN29960.1| sensory box histidine kinase/response regulator [Brucella suis
           1330]
 gi|62196093|gb|AAX74393.1| sensory box histidine kinase/response regulator [Brucella abortus
           bv. 1 str. 9-941]
 gi|255999623|gb|ACU48022.1| sensory box histidine kinase/response regulator [Brucella microti
           CCM 4915]
          Length = 945

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 556 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 615

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 616 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 675

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 676 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 735

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 736 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 794

Query: 215 K 215
           +
Sbjct: 795 R 795


>gi|17987230|ref|NP_539864.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
 gi|17982903|gb|AAL52128.1| sensory transduction protein kinase [Brucella melitensis bv. 1 str.
           16M]
          Length = 767

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 378 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 437

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 438 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 497

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 498 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 557

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 558 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 616

Query: 215 K 215
           +
Sbjct: 617 R 617


>gi|56965855|ref|YP_177589.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
 gi|56912101|dbj|BAD66629.1| two-component sensor histidine kinase [Bacillus clausii KSM-K16]
          Length = 612

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 61/220 (27%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+  + + LE L      +  I    +++ +  +   I  +  +     
Sbjct: 385 FVANVSHELRTPLTTMKSYLEALADGAMQDEDIAPRFLEVTQKETDRMIRLVNDLLQLSK 444

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------------RERAKILL 120
              +   L             I     + V                       +  ++L 
Sbjct: 445 IDSNDYRLDLHWVELGAFLHSIVERFEMVVKDKNIDFHRHIAKQPTYVKIDTDKMTQVLD 504

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           N+   A    P GG VTI++    N+   S+   G      E   +I +           
Sbjct: 505 NILSNAIKYSPSGGNVTITLLHQGNKARISIADEGLGI-PAESQDKIFERFYRVDKARAR 563

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +         H ++  +      +    +   L 
Sbjct: 564 NVGGTGLGLAIASEYVHAHEGDIWVHSEYNEGTTIYITLP 603


>gi|319781148|ref|YP_004140624.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317167036|gb|ADV10574.1| PAS sensor protein [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1545

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 62/241 (25%), Gaps = 26/241 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +     + +    +   + + H+I +P+  +    ELL +  ++ +      +   S 
Sbjct: 979  LREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSDLDPKQKTFTDIIVKSG 1038

Query: 61   IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
               L  +     ++              +    + D+  ++             RV+   
Sbjct: 1039 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRVEPRL 1098

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFP 161
                I       +I+ NL   A      G     VT     +  +   S+   G      
Sbjct: 1099 ESLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERVPTGTKLTISVTDTGIGIPEE 1158

Query: 162  EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214
            +        +          +   +       L       +  E  +        S  L 
Sbjct: 1159 KLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGDIGVESAEGKGSTFWFSVTLP 1218

Query: 215  K 215
            +
Sbjct: 1219 R 1219


>gi|242278606|ref|YP_002990735.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242121500|gb|ACS79196.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 579

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 81/241 (33%), Gaps = 30/241 (12%)

Query: 1   MAKNICFNLSSMD----LVAL--LCSRICHDIISPIGAIHNSLELLDE------------ 42
           M ++    L  M+    + ++  L + + H+I +P+  I+    LL +            
Sbjct: 333 MTRSKA--LQQMEHHNRMASIGRLAAGVAHEINNPLAIINEKAGLLKDLFTFSKAYDADE 390

Query: 43  --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKR 99
             +G+ D V+  +          L F R        V     +  +   + ++       
Sbjct: 391 RVIGLVDSVIGSVERCGRITKRLLGFSRQTDMEFRPVYPRKVIDTVLSFLDKEAEYRCID 450

Query: 100 VQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKING 155
           V V       ++  +R    ++LLNL   A  ++  GG + I V+     + +FS+K NG
Sbjct: 451 VSVDVDDGIYEVVTDRGKLEQVLLNLINNAFQAMKDGGALWIRVERGDEGQVLFSVKDNG 510

Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +   +I +    +        +       L  +    +  +         S +L
Sbjct: 511 CGIPESDLK-RIFEPFYSTKKQSGGTGLGLSITYGLVQDLGGEMKVQSQLGKGTEFSFML 569

Query: 214 E 214
            
Sbjct: 570 P 570


>gi|229058193|ref|ZP_04196581.1| hypothetical protein bcere0026_13080 [Bacillus cereus AH603]
 gi|228720057|gb|EEL71641.1| hypothetical protein bcere0026_13080 [Bacillus cereus AH603]
          Length = 423

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSNELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L            +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNP-AGTTFTISIP 409


>gi|229196206|ref|ZP_04322955.1| hypothetical protein bcere0001_17650 [Bacillus cereus m1293]
 gi|228587271|gb|EEK45340.1| hypothetical protein bcere0001_17650 [Bacillus cereus m1293]
          Length = 346

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +        +  + +I   
Sbjct: 112 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDNNLSEEKREHYLTIIETE 168

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++     K+
Sbjct: 169 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELELNLGKV 228

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P GG +TI +++ +      ++ +G      +    
Sbjct: 229 HITADQESMSQVWINLIHNSIKFTPSGGTITIQLKEYEKVVEVRIRDSGIGISEEQKQHI 288

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           F +    +           +    V  +   ++  +  E  +         +
Sbjct: 289 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGSGTEFIVRI 340


>gi|227329043|ref|ZP_03833067.1| osmolarity sensor protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 452

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 216 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGKEDDYLAESINKDIEE 275

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    +G++      +         +        S  
Sbjct: 276 CNAIIEQFLDYLRTGQEMQTEVADLNAIMGEVVASESGYERQIDSEFATGELLVRISSLS 335

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171
             +  LNL + A        KV+   +       F ++ +G           F   V G+
Sbjct: 336 IKRAALNLVVNAARYGNGWIKVSTGREL--QRVWFQVEDDGEGIAPDQLKHLFQPFVRGD 393

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T     +    V  +   +   L     +   + + A L 
Sbjct: 394 SARTTSGTGLGLAIVQRIIDAHNGVLDVGSSERGGLCVRAYLP 436


>gi|220906985|ref|YP_002482296.1| histidine kinase [Cyanothece sp. PCC 7425]
 gi|219863596|gb|ACL43935.1| histidine kinase [Cyanothece sp. PCC 7425]
          Length = 555

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/204 (11%), Positives = 67/204 (32%), Gaps = 14/204 (6%)

Query: 24  HDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75
           H++ +PI  +   LEL+  +   + E + L+          ++ +       R  F +  
Sbjct: 333 HELRTPITIVRGHLELMGTDPAEQTETLALVMDELDRMSRLVEDLVLLAKAERPDFLHLE 392

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
           +V+  +   ++          + +++ S T   I   +   + ++NL   A         
Sbjct: 393 TVNLEVLAQELFSKATALANRNWQLESSATAAVILDRQRVTQAVMNLAQNATQHTCATDT 452

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQFYYVILLA 190
           +++ V     + +  +K  G      +   +I +            +   +    V  +A
Sbjct: 453 ISLGVATDNGKVLLWVKDTGEGIAPVD-QERIFERFARVAHSRRRSEGAGLGLAIVRAIA 511

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   +  +         + +L 
Sbjct: 512 AAHGGEVRLQSQVGIGSTFTVILP 535


>gi|156974489|ref|YP_001445396.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
 gi|156526083|gb|ABU71169.1| hypothetical protein VIBHAR_02206 [Vibrio harveyi ATCC BAA-1116]
          Length = 827

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + +    ++    A L   + H+I +P+  +   L++L++   + E  +++RL+  S  
Sbjct: 449 TEALKARRANEAKSAFLA-TMSHEIRTPLNGLLGMLQILNDDIRDLEQRKVLRLALNSGE 507

Query: 62  IRLKFMRL----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             L  +                         + + + +       E  I  +     S  
Sbjct: 508 HLLSILNDILDLAKVESDALALDIHPFKMADIITPVEVTYQGLCSEKGIVFNVDNHCSDD 567

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    ++LLNL   A      G               F ++ +G      ++  
Sbjct: 568 CYYCGDSVRIRQVLLNLVGNALKFTKTGHINVCIKALESPFVEFCVEDSGIGI-PQDRMD 626

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VLSALLE 214
            I +                 +       L      ++  E              L 
Sbjct: 627 SIFNEFEQAEVSTTRQYGGTGLGLAICQKLVTLMNGQISVESGLGKGSQFRFVISLP 683


>gi|156972944|ref|YP_001443851.1| osmolarity sensor protein [Vibrio harveyi ATCC BAA-1116]
 gi|156524538|gb|ABU69624.1| hypothetical protein VIBHAR_00622 [Vibrio harveyi ATCC BAA-1116]
          Length = 430

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 65/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKILLNLFMVAHA 128
               +     +  +       E    V+    ++ T            + + NL + A  
Sbjct: 280 VNKESFEQVDINTITSDVATSEGGYEVEIETDLNPTMPAAKGSPIAIKRAVSNLVVNALR 339

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYY 185
                 K++  V   K      ++ NG           F     G+     +   +    
Sbjct: 340 YGNGWVKISTGVTADKQLVWVCVEDNGPGIEQSQIAHLFEPFTRGDTARGSEGTGLGLAI 399

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++     +  +       
Sbjct: 400 VKRIVSQHSGSVVVRNRSEGGLSAQISFP 428


>gi|146337855|ref|YP_001202903.1| two component sensor protein chvG [Bradyrhizobium sp. ORS278]
 gi|146190661|emb|CAL74663.1| two component Sensor protein chvG (Histidine kinase sensory protein
           exoS) [Bradyrhizobium sp. ORS278]
          Length = 599

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 66/248 (26%), Gaps = 37/248 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + ++++     + + H++ +P+ ++ +++E L           ++ +I    
Sbjct: 353 MTDALYNRIEAIEM---FAADVAHELKNPLTSLRSAVETLPLARNDNSRARLLAVIEHDV 409

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------ 103
                 +  +                 VD    L  +  V  +       V V       
Sbjct: 410 KRLDRLISDISDASRLDAELQRQDMTLVDLRRLLNTLTSVANETKKNGTDVAVEVRFEGR 469

Query: 104 ---WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
               T           +++ NL   A +    GGKV I+ +  ++E    +  +G   R 
Sbjct: 470 GVNDTFSVPGHDSRLGQVISNLLSNAQSFSAAGGKVRITCRRVRSEIEIMVDDDGPGIRE 529

Query: 161 PEKFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HN 206
                       +           +       +   +  R+  E                
Sbjct: 530 DALQRIFERFYTDRPHQGFGQNSGLGLSISKQIIDAHGGRIWAENRPGPVDAEGNPTVAG 589

Query: 207 VVLSALLE 214
                 L 
Sbjct: 590 ARFIVRLP 597


>gi|119509382|ref|ZP_01628531.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119465996|gb|EAW46884.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 658

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +       +L A   + +CH   +P+  +  S  LL +   +    ++  L     
Sbjct: 416 LNQALEQAKQLSELRARFLAMVCHQFRTPLNIVSFSNSLLKQQVDKHTEQKIQPLLDHIE 475

Query: 61  IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
               +  ++                     +D +  L DI           K +      
Sbjct: 476 KAIEQISQMLDDTLFFAKAETAKINFEPQPLDLV-NLCDILVAQMHMSMSQKPINFVSQF 534

Query: 107 EKIDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             +    +   +     NL   A    P   +V   +     + IF +K  G    + + 
Sbjct: 535 YCLMACVDPKLLEPILKNLLENAIKYSPSNMRVDFMLACENGQVIFQVKDKGIGIPYKD- 593

Query: 164 FTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +          I    +    +  L   +  ++  E         + +L 
Sbjct: 594 QQRLFEPFYRGSNVDNIPGTGLGLSIIKTLVDLHGGQVSVESEVAVGTTFTVMLP 648


>gi|108757295|ref|YP_630537.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
 gi|108461175|gb|ABF86360.1| sensory box histidine kinase/response regulator [Myxococcus xanthus
           DK 1622]
          Length = 944

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 61/230 (26%), Gaps = 33/230 (14%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74
           +L  + + H+I +P+ AI     LL +  + +E    +     S+   L  +     ++ 
Sbjct: 271 SLFLATMSHEIRTPMNAIIGMTGLLLDRALTEEQRDFVATIRQSSEALLTLLNDVLDFSK 330

Query: 75  ----------GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119
                        D    +  +  ++    +         +        +  +    ++L
Sbjct: 331 IEAGRFEAELRPFDLRQCVESVLDLMAVRASEKGLDLGCDLAPPLPQMLVGDASRLRQVL 390

Query: 120 LNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           LNL   A      GG V          +   +  E  FS++  G      ++ T +    
Sbjct: 391 LNLVGNALKFTEHGGAVVSVEGLALGGTEGAADWELTFSVQDTGLGI-PDDRRTGLFQPF 449

Query: 172 V------ESTIDSHDIQFYYVILLAHENKIRLLPEII--DDHNVVLSALL 213
                          +       L       +  E              L
Sbjct: 450 NQLDASVSRRFGGTGLGLAISKRLVEAMGGTIWVESEGVPGQGTTFRFTL 499


>gi|91227595|ref|ZP_01261899.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
 gi|91188488|gb|EAS74781.1| sensor histidine kinase [Vibrio alginolyticus 12G01]
          Length = 806

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      +S +      + + H+I +P+  +  + ++L +  + DE  + +R    S 
Sbjct: 339 LEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDEQRKHLRTLYDSG 398

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +     Y+      +   +    IE  I   K V  +                 
Sbjct: 399 DHMMTLLNEILDYSKIEQGHVEFENKPFPIESIIGSIKSVYQTLCAEKGLRFRVVSHLPT 458

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
                +      ++L NL   A     RG            +  + I  +K  G      
Sbjct: 459 GRWYNNDKARLRQVLFNLLNNAVKFTDRGIVEVELAEKSSKAGTKLILKVKDTGIGI-SK 517

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   +I                   +    V  +A     +++ E  +D     +  +
Sbjct: 518 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGQVVVESQEDAGTTFTVEI 575


>gi|307822840|ref|ZP_07653071.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylobacter tundripaludum SV96]
 gi|307736444|gb|EFO07290.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylobacter tundripaludum SV96]
          Length = 635

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 69/233 (29%), Gaps = 23/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQ 51
           N   +++ + L+  + S I H++  P+ AI +  +            L++   +  +  Q
Sbjct: 396 NELAHVTRLGLMGEMASGIAHEVNQPLSAISSYTQVSLNLINAENPDLVNLTEVLYKTQQ 455

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKID 110
               +        +F++    +  + +    + +   +    +  +  ++          
Sbjct: 456 QALRAGRIIHRMREFVKSHAKHRSTAEINSLIHEAVSLCIADLKQNCIKLTFELESNLPP 515

Query: 111 LSRERAKILLNLFM---VAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +  +  +I   +      +  +L       +      S     N     +K NG      
Sbjct: 516 IYVDHVQIEQVIINLLRNSIDALKTLPAKQQRQLAIHSRLTLNNSIQVRVKDNGPGL-DT 574

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++  +I+     +  D   +       L   ++  L              +L 
Sbjct: 575 DQQQRILTPFYTTKADGMGMGLSISRSLIEAHEGTLHFNSQSGKGTTFYFILP 627


>gi|239625415|ref|ZP_04668446.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519645|gb|EEQ59511.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 542

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +       +  L + L   + HD+ +P+ +I  +  +L       DE         +  
Sbjct: 301 REEETAMAKAEQLRSNLLRSMSHDLRTPLTSISGNAGVLLKDAGTLDEAHKHRIYSDIYD 360

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEK 108
            S     +    + +     G+V   +       + D      +    +  + V+  G+ 
Sbjct: 361 DSMWLISLVENLLSITRMEGGAVQLHMETELLEEVIDEAMRHVNRRHENHSIHVTQEGDY 420

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I    +     +++ NL   A    P G  +TI         +  +  NG      E   
Sbjct: 421 ILACVDAQLIIQVITNLVDNAIKYTPDGSSITIKSYKDNGNAVIEVSDNGPGI-PDESKD 479

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I      +            +       + + +K  +          +    L 
Sbjct: 480 RIFQMFYTTGHKSADGKRGMGLGLPLCRAILNAHKGTIEVLDNTPSGSIFRLTLP 534


>gi|220919484|ref|YP_002494788.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957338|gb|ACL67722.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 363

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 58/220 (26%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM------SAIIRLKFMRLAF 71
           L + + H+I +P+  +  S ELL              ++             L   R A 
Sbjct: 141 LAAGLAHEIKNPLAGLQGSAELLAREAEGPAREYAAVIAREAKRVDGLVRELLDLARPAA 200

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMVAH 127
              G V     LGD   +       D+   V      +        +  +++LNL   A 
Sbjct: 201 LQQGPVALHDVLGDALVLARGIPGADRIAFVERYDPSLPPVLGDEEKLMQVVLNLVRNAV 260

Query: 128 ASLPRGGKVTISVQDSKNENIFSL-------------KINGNLARFPEKFTQIVDGNVES 174
            ++       ++++ S +     +             +  G          ++      S
Sbjct: 261 DAVASTAAPRVTIETSVSPLRLRVASGRTRPLARISIQDEGPGIPEAML-QRLFTPFATS 319

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +  R+            +  L 
Sbjct: 320 KPHGTGLGLAISRRIVEAHGGRIEVRNRAGGGAEANVYLP 359


>gi|158320114|ref|YP_001512621.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158140313|gb|ABW18625.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 465

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 75/226 (33%), Gaps = 15/226 (6%)

Query: 3   KNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           K +   +     L A+  L S I H+I +P+G I    + +++   ++E+ + + +    
Sbjct: 232 KRLEAEVKRGERLAAVGQLASGIAHEIRNPLGIIKTISQTINQDIKDEEIKEGLDIIQHE 291

Query: 60  AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKI 109
                      L F R        +D    L ++  V   F        R  +    +  
Sbjct: 292 IDRANKVIKGILDFARPNKIQDCKIDLEKLLNELVMVTRKFAQQQNVDLRFNILKQNKIQ 351

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168
               +  +  +N+ +    ++  GGK+ I++++S     + S K  G      E   +I 
Sbjct: 352 GDPDKLKQAFINIILNGIQAMKDGGKLEITLEESDKKWAVISFKDEGEGI-SDELLDKIF 410

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +          E+  ++           +   L 
Sbjct: 411 NPFFTTKESGTGLGLSITHSTIEEHNGKIEFNSKLGEGTNVKVYLP 456


>gi|86156536|ref|YP_463321.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773047|gb|ABC79884.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 497

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 58/228 (25%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
           A+     L +  L  L  + +   H++ + +  I     +    L +       ++ IR 
Sbjct: 255 AQKTREVLRADRLATLGGIAAGFAHELGNSLNVIRGYAAVTSRELPDDSPHRSDVEAIRR 314

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
               A   ++   +          +  +  I +     +            V       +
Sbjct: 315 EVTRAAGLIERFLVFARARTVHPLVQPVEPILREAVEVLGPAAAHAKVERAVEVEPGLPE 374

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQ 166
           L  +     +  LNL + A  ++   G         +    +   +  G     P+    
Sbjct: 375 LLADAELLRQAFLNLGVNAVQAMQDRGGKLTVRALREPGGLVVEFQDTGPGI-DPDAAAH 433

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +      +    V   A  +   +               L 
Sbjct: 434 VFEPFFTTKATGTGLGLAIVRQAAEAHGGTVEVAGAPGAGATFRVHLP 481


>gi|313150084|ref|ZP_07812277.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138855|gb|EFR56211.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 534

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 65/229 (28%), Gaps = 25/229 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           ++   L     + + H+  +P+  I + +EL+ +       +            ++K + 
Sbjct: 1   MNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHAQQMKLLI 58

Query: 69  LAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLS 112
                    D                 +   +     A  K +                 
Sbjct: 59  SELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQDVFIWIDD 118

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  K+L NL   A   +P  GK+ I    + ++ I ++K +GN     E   +I D   
Sbjct: 119 WQMRKVLFNLLSNAFKHVPDKGKINILTSTTPDQVIIAVKDSGNGISKEE-QERIFDRFY 177

Query: 173 ESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++            I       +   +   +  E   +        L K
Sbjct: 178 QADNRNKAIHVGTGIGLALTKSIIQLHHGTIEVESELNEGSCFIVKLPK 226


>gi|255010868|ref|ZP_05282994.1| putative two-component system, sensor kinase [Bacteroides fragilis
           3_1_12]
          Length = 537

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 76/232 (32%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +L+ +    +E  + IR+ + + 
Sbjct: 293 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 352

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + L+ +               ++ ++  +  L +   +          VQ+ +T ++  
Sbjct: 353 ELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQMQQKNQRPGVQILFTEKEPC 412

Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++++NL   A      G           KNE  F +K  G      +K 
Sbjct: 413 CVINTDRLRLSQVIINLMNNAMKFTAEGSITLGYRLNGQKNELYFFVKDTGIGI-PADKA 471

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +  V   S +    +      ++       +  +   +        L 
Sbjct: 472 EKVFERFVKLNSFVKGTGLGLAICRVIIERLGGTIGVDTAVEEGACFWFRLP 523


>gi|229016814|ref|ZP_04173743.1| hypothetical protein bcere0030_13820 [Bacillus cereus AH1273]
 gi|229023019|ref|ZP_04179535.1| hypothetical protein bcere0029_13640 [Bacillus cereus AH1272]
 gi|228738267|gb|EEL88747.1| hypothetical protein bcere0029_13640 [Bacillus cereus AH1272]
 gi|228744466|gb|EEL94539.1| hypothetical protein bcere0030_13820 [Bacillus cereus AH1273]
          Length = 416

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L +      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQDSVSPSNKELFKSLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLAISKTREFTREPFRINTFLREYIQQLLASEVFLHNISIDYDFSTELDGVLVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +       + I+     N    + K NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEEPLSIQITSYRLDNFVRITFKDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     D      +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKV-SSDHSGTTFTISIP 409


>gi|227431460|ref|ZP_03913509.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
 gi|227352826|gb|EEJ43003.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. cremoris ATCC 19254]
          Length = 623

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 65/241 (26%), Gaps = 33/241 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
                + S     +  S + H++ +P+ ++ + ++ L     D+  +    + +++  + 
Sbjct: 371 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAIDDPEMAQNFLGVVQDETQ 428

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------- 103
             I  +  +            +         + +F+     + +                
Sbjct: 429 RMIRMINDLLELSRLDQGTMEVKLEVINLNSLFNFVLNRFDMILESDAKNENTITKNYNI 488

Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                           +  ++L N+   A    P GG +T  +  +K   I S+   G  
Sbjct: 489 LREFTKEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 548

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +       +  +   R+  + +++        
Sbjct: 549 IPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYIS 608

Query: 213 L 213
           L
Sbjct: 609 L 609


>gi|260589382|ref|ZP_05855295.1| sensor protein KdpD [Blautia hansenii DSM 20583]
 gi|260540463|gb|EEX21032.1| sensor protein KdpD [Blautia hansenii DSM 20583]
          Length = 489

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 69/235 (29%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
            +     L    L A L   I HD+ SP+ +I  + E L   +E        ++ R    
Sbjct: 251 QREAEMRLEKEQLRANLLRSISHDLRSPLTSISGNAENLLANEEKLPAGRRREIYRDIYD 310

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSWTG 106
            +   +  +      T   +  + L               + V         R++     
Sbjct: 311 DSKWLINLVENLLSITRIENGNMKLDMQGEIVEEVIEEALKHVNFRGKDQSVRIECDEIL 370

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   ++++NL   A    P+  ++ I  +    + I S++ NG     PE+  +
Sbjct: 371 MAKMDLKLMLQVIINLVDNAVKYTPKNAEILIKAEAEGEKVILSVRDNGTGL-TPEQKEK 429

Query: 167 IVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + D                 +       +   +  RL          V    L K
Sbjct: 430 VFDMYYTVNRGIGDARRGMGLGLPLCQAIVKAHGSRLEVCDNTPKGTVFQFALSK 484


>gi|254516076|ref|ZP_05128136.1| nitrogen regulation protein NR (II) [gamma proteobacterium NOR5-3]
 gi|219675798|gb|EED32164.1| nitrogen regulation protein NR (II) [gamma proteobacterium NOR5-3]
          Length = 348

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 63/238 (26%), Gaps = 29/238 (12%)

Query: 4   NICFNLSSMD-LVA------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +    +S  + L +       +   + H+I +P+G I  + +LL+    +  + +   + 
Sbjct: 110 DRLLRISKEENLASAQETTRTVVRGLAHEIKNPLGGIRGAAQLLERELPQGSLQEYTGII 169

Query: 57  SMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              A      +              ++    L  + Q+          +   +      +
Sbjct: 170 IQEADRLRDLVDRLLGPNKQPALLPLNVHEVLEHVLQLAVVEAGERLAIVRDYDPSLPPI 229

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS---------------VQDSKNENIFSLKINGN 156
             +RA+++  L  +   +L    K                       +      +  NG 
Sbjct: 230 KGDRAQLIQALLNIVGNALQATDKQPQCALTLRSRSQRQFTIGEHRHRLVCQIDIIDNGP 289

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +    V    +   +       + H +   L  E         +  L 
Sbjct: 290 GI-PDQLSETLFVPMVSGRAEGTGLGLSISQSIIHRHGGLLNCESRPGE-TCFTIYLP 345


>gi|159899963|ref|YP_001546210.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159893002|gb|ABX06082.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 791

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 69/257 (26%), Gaps = 44/257 (17%)

Query: 1   MAKNICFNLSSMDLV------------------ALLCSRICHDIISPIGAIHNSLELLDE 42
           MA+ I   +  ++                    +   + + H++ +P+ AI    E+L E
Sbjct: 257 MAQTIRGQIERLEQAKDHAQRLQFVAEEANRAKSNFLANMSHELRTPLNAIIGYSEILQE 316

Query: 43  VGIE------DEVMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQ 88
              +       E +  IRLS    +  +                    +     L D+  
Sbjct: 317 ECEDLGQTAMIEDLDRIRLSGRHLLTLINDILDLAKIESGKVEILPEEISLPQLLHDVRS 376

Query: 89  VIEDFIAVDKRVQVSWTG----EKIDLSRERAKILLNLFMVAHASLPRGGKV-TISVQDS 143
            ++  I  ++   V  +       I       +IL+NL   A      G     +   + 
Sbjct: 377 TVDPMIIKNENRLVIESAAGLLTMISDETRLRQILVNLLSNAAKFTEHGRITLRVQPSEE 436

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRL 197
           +    FS+  NG      +   ++                   +       LA      +
Sbjct: 437 EGWIDFSVHDNGIGMSNAQLS-RLFQPFTQADASTTRKYGGTGLGLALSRRLAQLLGGDI 495

Query: 198 LPEIIDDHNVVLSALLE 214
             +         S  L 
Sbjct: 496 RVQSELGVGSTFSVHLP 512


>gi|89072878|ref|ZP_01159435.1| sensor protein LuxQ [Photobacterium sp. SKA34]
 gi|89051400|gb|EAR56855.1| sensor protein LuxQ [Photobacterium sp. SKA34]
          Length = 576

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 24/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---------------- 63
           + I H++ +P+  +  S ELL +  ++++  +L+   + S  +                 
Sbjct: 219 AMINHELRTPLNGLLGSAELLQDTPLDNDQQKLLTTLNHSGELLRAIINDLLDYSKINAG 278

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           +  +         +   +      +  E  +  +           I       +I +NL 
Sbjct: 279 MLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNIYYSHDLPKVFIGDEDRIKQIFVNLI 338

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A    P  G V   +     +  F++K +G          ++     +       + +
Sbjct: 339 SNAIKFTPA-GFVHAKLWWHNKQLQFTVKDSGCGI-DHSDQHKLFKPFSQVDITSKRSHE 396

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L  +    +  E         +  L 
Sbjct: 397 GTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVSLP 433


>gi|116619022|ref|YP_819393.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|116097869|gb|ABJ63020.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 623

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 65/241 (26%), Gaps = 33/241 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
                + S     +  S + H++ +P+ ++ + ++ L     D+  +    + +++  + 
Sbjct: 371 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALAEGAIDDPEMAQNFLGVVQDETQ 428

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------- 103
             I  +  +            +         + +F+     + +                
Sbjct: 429 RMIRMINDLLELSRLDQGTMEVKLEVINLNSLFNFVLNRFDMILESDAKNENTITKNYNI 488

Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                           +  ++L N+   A    P GG +T  +  +K   I S+   G  
Sbjct: 489 LREFTKEDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDQGLG 548

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +       +  +   R+  + +++        
Sbjct: 549 IPRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFNGRIWVDSVENKGSTFYIS 608

Query: 213 L 213
           L
Sbjct: 609 L 609


>gi|323486814|ref|ZP_08092132.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323694954|ref|ZP_08109104.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323399827|gb|EGA92207.1| sensor protein [Clostridium symbiosum WAL-14163]
 gi|323501044|gb|EGB16956.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 467

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 51/216 (23%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIR---LKFMRLAFG 72
           + + HD  SP+ +I   LE + +      +  + + +I   +         +  +     
Sbjct: 248 ANVSHDFRSPLTSIKGYLEAILDGTIPPELYQKYLGIIISETERLNKLTQGMLTLNSLDS 307

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGEKIDLSRERAKILLNLFM 124
                 +   +    +                                 +  ++L NL  
Sbjct: 308 KGYLSRTNFDINRTVKDTAATFEGTCSAKRITFDLTFSDSIQMVYADLGKIQQVLYNLID 367

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID--SH 179
            A         + I       +   S+K  G           + +    +V    D    
Sbjct: 368 NAIKFSREDSVIYIQTSVRYEKVFVSVKDTGVGIPKNNIKKIWERFYKSDVSRGKDKKGT 427

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +   +     +         L K
Sbjct: 428 GLGLAIVKEIIQAHGENIDVVSTEGVGTEFIFSLPK 463


>gi|313158986|gb|EFR58363.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 349

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 66/220 (30%), Gaps = 25/220 (11%)

Query: 21  RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            + H++ +PI  I   +  L     ++  I  + ++    S    I  +  +        
Sbjct: 123 NVAHELKTPIFNIQGYISTLLDGGLEDELINRKYLERAEKSIDRLINIVNDLDTISKLES 182

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------------WTGEKIDLSRERAKILL 120
           +++ L         +   IA    ++                      +       ++++
Sbjct: 183 NMNRLKMERFDIVALTKEIAEQAEMEADKKGIKISVKGAENLPSPFWVLADKHYIGQVMV 242

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           NL + +      GG+  +  +D  ++ +  ++ NG+     +    F +    +      
Sbjct: 243 NLIINSIRYGKEGGQTRVHFRDMLDKILIEVEDNGSGIGKEDLPRVFERFYRTDKGRSRE 302

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +   +  R+            S  L+K
Sbjct: 303 QGGTGLGLAIVKHIVEAHGERITVRSELGVGSTFSFTLKK 342


>gi|262384786|ref|ZP_06077918.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262293502|gb|EEY81438.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 571

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 24/233 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE   L   
Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
              S+   L+     +++     G +     +    ++IE  I  +          ++V 
Sbjct: 395 IKESSNRLLEITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +   L  +  KI   L      A    P  G++ I  +   +     ++  G     
Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQGHSVEIYVQDFGKGIDP 514

Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +          + +    +           +   L  +           
Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567


>gi|254285731|ref|ZP_04960694.1| sensor protein TorS [Vibrio cholerae AM-19226]
 gi|150424228|gb|EDN16166.1| sensor protein TorS [Vibrio cholerae AM-19226]
          Length = 984

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +         +          +  E  I +   +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLP 690


>gi|114569501|ref|YP_756181.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
 gi|114339963|gb|ABI65243.1| multi-sensor signal transduction histidine kinase [Maricaulis maris
           MCS10]
          Length = 911

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 29/242 (11%)

Query: 1   MAKN-ICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEV-----------GI 45
           +AK      + + +     +   + + H++ +P+ AI+   E++ +            G 
Sbjct: 602 LAKKYEEEKIRAEEANRSKSEFLANMSHELRTPLNAINGFSEIMMQEMFGPLGDDRYVGY 661

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDK 98
             +++   R         L   ++  G            ++ +              +  
Sbjct: 662 MKDILSSGRHLLELINDILDMSKIEAGKMQLQPEPTDASELVEQSIRIVRGRAEEKQLKL 721

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           R  VS   E     R   ++++NL   A    P GG+VT+    S     F +   G   
Sbjct: 722 RADVSDLPEIEVDPRAFKQVMINLVSNAVKFTPEGGRVTVRGFLSGLGVAFQVSDTGIGI 781

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +   ++             +     +       L   +   L  + +      +S +
Sbjct: 782 AKDDLP-RLGRPFEQIESQHSKSFQGSGLGLALSKSLIELHGGTLSIDSVLGEGTTVSVV 840

Query: 213 LE 214
           L 
Sbjct: 841 LP 842


>gi|91200023|emb|CAJ73065.1| hypothetical histidine kinase protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1128

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 78/236 (33%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           M K +   L S  + AL  + S + H++ + + AI  ++++L       +++        
Sbjct: 737 MEKEL---LHSKKMQALGTITSGVAHEVNNILAAIDGNIQMLMRQNKGRKMLLDSLKIVH 793

Query: 51  QLIRLSSMSAIIRLKFMRLA-----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + ++  +       +F +       +      +    +          +A    ++    
Sbjct: 794 KYVKDGAEIVRRLNEFTKKNEDSPGYVPVDLAELTRHVVRFLSPRWQDMAQGTGIKYRIN 853

Query: 106 GEKIDLSRER-------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            + +   R+         +++LN+   A  ++P+GG +  ++ + ++    S+   G   
Sbjct: 854 TDGLKKVRDIKGNPSELREVVLNIITNALDAMPKGGTLCFNIWEDEDNVNLSISDTGAGM 913

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E  ++I D    S      +    V  +   +   +          V      
Sbjct: 914 -TEEVISKIFDPFFTSKEKGTGLGLSVVYGIVKRHGGVIHVSSTVGMGSVFLLSFP 968


>gi|300710686|ref|YP_003736500.1| HTR-like protein [Halalkalicoccus jeotgali B3]
 gi|299124369|gb|ADJ14708.1| HTR-like protein [Halalkalicoccus jeotgali B3]
          Length = 1180

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 58/208 (27%), Gaps = 2/208 (0%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                   +  L     S I HD+ +P+      LE+LD    + E +  ++ +       
Sbjct: 957  ERELERQNERLEGF-ASLISHDLRNPLTVASGYLEVLDVPEEQREFLGKVQSAHDRMERI 1015

Query: 64   LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            ++ +        ++     +   E V + +  V+                     L  +F
Sbjct: 1016 IEDVLTLARQGKAIGETRSVSLAEVVEDAWENVETAEARLVVDGDPGCVAADGSRLEEVF 1075

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
                 +    G   ++ +     + F ++ +G      E    + +    +T     +  
Sbjct: 1076 ENLFRNAIEHGSEGVTCRVGATPDGFYVEDDGPGV-PAEDREAVFEYGHTTTESGTGLGL 1134

Query: 184  YYVILLAHENKIRLLPEIIDDHNVVLSA 211
              V  +   +   +      D       
Sbjct: 1135 SIVSTIVEAHGWTVTVTDGTDGGARFEF 1162


>gi|299538376|ref|ZP_07051659.1| sensor protein [Lysinibacillus fusiformis ZC1]
 gi|298725963|gb|EFI66555.1| sensor protein [Lysinibacillus fusiformis ZC1]
          Length = 591

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 53/238 (22%), Gaps = 29/238 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54
           M +          L +   + + H++ +PI  +    E L +     +  +         
Sbjct: 357 MTEQHRL----EKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDQEERNEITKIIY 412

Query: 55  LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----Q 101
             S                       Y   +        I Q                 +
Sbjct: 413 DESKRMGRLVTDLLDLARMESGHMALYKDELPINSTFERITQKFSQVAKEKHVRLLFESE 472

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +             ++L NL   A      G       Q+       S++  G+     
Sbjct: 473 FNDEAMINIDEDRIEQVLTNLVDNALRHTDEGSVSVKVEQE-PTFAKISVQDTGHGIPQE 531

Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +    +     +     +       +   +   ++ + +       +  L 
Sbjct: 532 DLPYVFERFYKADKARTRSKGGTGLGLAIARNIVKAHSGNIMVDSVLKEGTTFTFYLP 589


>gi|71281534|ref|YP_268742.1| C4-dicarboxylate transport sensor protein [Colwellia
           psychrerythraea 34H]
 gi|71147274|gb|AAZ27747.1| C4-dicarboxylate transport sensor protein [Colwellia
           psychrerythraea 34H]
          Length = 611

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 59/232 (25%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           M K     + S  L     + + I H+I  P+ A+ +  E                 + L
Sbjct: 377 MNKMRDELIQSEKLALIGSMSASINHEINQPLTALRSYSENALAYQERSMTDKVKNNLSL 436

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106
           I          +         +     +VD  + L     +++      +    S     
Sbjct: 437 IIGLVDRLSDIVSQFNSFSKKSTGVATAVDVQMSLMAAMSIVKHQAKAARVEFTSKPCLE 496

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE 162
                  +    ++L+NL   A  +L       I +  S      I  ++ NG       
Sbjct: 497 TVHVYGDAIRFEQVLVNLLSNAIQALSEQEHKQIIISVSDVKEHVIIEIRDNGPGILVDN 556

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       +    + +L      D   + +  L 
Sbjct: 557 IDRVFEAFFTTKENFGLGLGLSISHRIIESMQGQLNVSNHPDGGAIFTISLP 608


>gi|256842305|ref|ZP_05547809.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13]
 gi|256736189|gb|EEU49519.1| phosphate regulon sensor kinase PhoR [Parabacteroides sp. D13]
          Length = 571

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 24/233 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE   L   
Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
              S+   L+     +++     G +     +    ++IE  I  +          ++V 
Sbjct: 395 IKESSNRLLEITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +   L  +  KI   L      A    P  G++ I  +   +     ++  G     
Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDP 514

Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +          + +    +           +   L  +           
Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567


>gi|255016481|ref|ZP_05288607.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|298377751|ref|ZP_06987702.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
 gi|298265454|gb|EFI07116.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
          Length = 571

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 24/233 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE   L   
Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
              S+   L+     +++     G +     +    ++IE  I  +          ++V 
Sbjct: 395 IKESSNRLLEITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +   L  +  KI   L      A    P  G++ I  +   +     ++  G     
Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDP 514

Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +          + +    +           +   L  +           
Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567


>gi|220919546|ref|YP_002494850.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957400|gb|ACL67784.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 589

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
           +         +  L A+  L + + H++ +P+ A+    ++L E          + E ++
Sbjct: 322 LRSMQAAAEHAERLAAIGRLVAGVVHELNNPLTAVTMYSDVLLERFTARAQDPSDVEKLR 381

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
            I+ +        + +      TG+    + L    +                  R    
Sbjct: 382 AIKDAGQRIQRLARDLITYARPTGARTEAVDLVPAVEEAGRMAKTALKESGAALVRDGGE 441

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +++L L   A  ++P G +V +++     E + ++   G     PE 
Sbjct: 442 GPYVVEGNRPSLVQVVLALVTNAAQAVPSGAEVRVALSREDGEVVLTVADAGAGM-PPEV 500

Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +    +       +    V  +   +   +           ++  L 
Sbjct: 501 AARAFEPFFTTRAGVGIGLGLPIVQGIVERHGGSVSLSTAAGRGTTVTVRLP 552


>gi|218886860|ref|YP_002436181.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757814|gb|ACL08713.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 576

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 66/242 (27%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSS-------MDLVAL--LCSRICHDIISPIGAIH----NSLELLDEVGIED 47
           M  +    +++         L ++  L + + H+I +P+  I+     + +L++      
Sbjct: 324 MRASDERRIAAFVQMEHTQKLSSIGRLAAGVAHEINNPLAIINEKAGLASDLMELAKDFP 383

Query: 48  EV----------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAV 96
           E           ++ +          L F R        +D    L +    + ++ +  
Sbjct: 384 ERDRFRGLVDAILRSVERCRSITHRLLGFSRRMDVNIEQLDVNDVLKETMSFLEQEALHR 443

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLK 152
                VS       ++ +R ++      + + +             +     +    S+K
Sbjct: 444 SIATSVSLDPAMPRIASDRGQLQQVFLNILNNAFAAVPDGGSVTLATWLRDPDTVGVSIK 503

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG                         +  +    +       +  +  +     ++  
Sbjct: 504 DNGKGMSDEVLRHIFEPFFTTKKTSGTGLGMFITYGIIRRLGGDIAVQSKEGAGTTVTVF 563

Query: 213 LE 214
           L 
Sbjct: 564 LP 565


>gi|254476057|ref|ZP_05089443.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
 gi|214030300|gb|EEB71135.1| multi-sensor hybrid histidine kinase [Ruegeria sp. R11]
          Length = 883

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 62/237 (26%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       L+     A L + + H++ +P+  +  +++LL + G+  E    + +   S 
Sbjct: 348 LRNARDKALAGERAKAELLTVMSHEMRTPLTGVLGAVDLLSDSGLSAEQSGYVTMIRQSG 407

Query: 61  IIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
              +               +        D    +G++ +  +               +  
Sbjct: 408 DRLMGHVNDVLQLSNLESSVDNENRRIFDLAKLVGELVKSQQTAARQAGNELSWSCNLGP 467

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
           T   +       ++L  +   A      G       +  S +    S+   G      + 
Sbjct: 468 TNNVLGRPLAVQRVLQKILQNAVDFTRDGAVAVEVQRLGSSDRVEISIADTGKGIAEDDL 527

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +           + +   +               +  E       + +  L 
Sbjct: 528 -DRIFEDFIRLDASYSRSSEGTGLGLAITRRTVEAMGGDISCESELGEGSLFTISLP 583


>gi|150006789|ref|YP_001301532.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149935213|gb|ABR41910.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 571

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 24/233 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE   L   
Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
              S+   L+     +++     G +     +    ++IE  I  +          ++V 
Sbjct: 395 IKESSNRLLEITSELLKMTQVEAGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +   L  +  KI   L      A    P  G++ I  +   +     ++  G     
Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDP 514

Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +          + +    +           +   L  +           
Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567


>gi|21220619|ref|NP_626398.1| two component sensor kinase [Streptomyces coelicolor A3(2)]
 gi|4539211|emb|CAB39869.1| putative two component sensor kinase [Streptomyces coelicolor
           A3(2)]
          Length = 454

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 59/204 (28%), Gaps = 13/204 (6%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75
           H++ +PI  +   LEL+ D+    +E ++L+          ++ +       R  F    
Sbjct: 247 HELRTPITIVRGHLELMGDDPAEREETVRLVTDELDRMSRIVEDLLLLAKAERPDFVTPE 306

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            V       D+          +  +      E     +   + ++ L   A      G +
Sbjct: 307 PVQLAELTADVFVKARTLGEREWVLDGVADREVHLDPQRITQAMVQLAQNAVQHTTAGQR 366

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190
           V I  +         +  +G   +  +    F +   G     +      +    V  +A
Sbjct: 367 VRIGSRADGWRIELYVADSGPGVQPQDAEVIFERFRRGTARRGVRGTGAGLGLSIVRAIA 426

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +  R+               LE
Sbjct: 427 EGHGGRVDLRTTAGGGATFVLTLE 450


>gi|315129764|gb|EFT85754.1| Histidine kinase [Staphylococcus aureus subsp. aureus CGS03]
          Length = 583

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 63/217 (29%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   S      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                    V  +  L D  ++     A D  + +++                ++L NL 
Sbjct: 425 AEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLI 484

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDS 178
             A      G ++ I+  ++++E+I  +K  G                            
Sbjct: 485 DNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQG 544

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   ++  E+   +  +     +      L K
Sbjct: 545 TGLGLFICKMIIEEHGGSIDVKSELGKDTTFIIKLPK 581


>gi|313157297|gb|EFR56722.1| PAS domain S-box protein [Alistipes sp. HGB5]
          Length = 743

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 57/221 (25%), Gaps = 18/221 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63
            S  L     + + H+I +P+ AI    +LL      +   +   + S++  +       
Sbjct: 522 ESNKLKTAFLANMSHEIRTPLNAIVGFSQLLTTEEDPEVRKEYNDIVSLNNGLLLQIISD 581

Query: 64  -----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDLSRER 115
                      A       D      +  +        +  + V     +       +  
Sbjct: 582 VLDLSRIESGHADLVRTRFDLRTLCREAVETFRLQTPEEVVLDVEKGLPSCTVCQYRQGL 641

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173
            +IL N    A    P+G       +         ++  G      E   +I +     +
Sbjct: 642 MQILANFIRNALKFTPKGFVTVGFERKRDR-LSLYVRDTGIGIPAEEL-DKIFERFYKVD 699

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +A +   ++  +            + 
Sbjct: 700 TFTQGTGLGLSICKSIAEQMGAQIGVDSAVGEGSCFRVEMP 740


>gi|295085256|emb|CBK66779.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 420

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 61/232 (26%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +      ++S+  L +   + + H++ +P+ AI     L+              ++  ++
Sbjct: 179 LTIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASGEEERKMYADILAENN 238

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +  +            +         L      I      +  V++        
Sbjct: 239 ERLLRLVNDIFDLSQIESGTVDFVYKEFDANDLLRELDGIFKAKLNNSPVELICEAHVQP 298

Query: 111 LSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +          ++L NL   A      G        +   E  F +   G      E   
Sbjct: 299 IMMYSERERIIQVLSNLLHNAMKFTASGEIRFGCRLEGMEEVYFFVSDTGIGI-PEEDQK 357

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I    +  +  +    +       +       L  +   +     S +L +
Sbjct: 358 KIFSRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLPR 409


>gi|261880781|ref|ZP_06007208.1| two component system sensor histidine kinase/response regulator
            [Prevotella bergensis DSM 17361]
 gi|270332558|gb|EFA43344.1| two component system sensor histidine kinase/response regulator
            [Prevotella bergensis DSM 17361]
          Length = 1324

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 25/240 (10%)

Query: 1    MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------Q 51
            M K    N+  ++   L   + I H+  +P+  +   L+ + E      V+        +
Sbjct: 785  MEKKDKKNIEELNKAKLRFFTSISHEFRTPLTLLITKLDAIIEEITPGSVLYKQFKGLRR 844

Query: 52   LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVS 103
                        L F ++  GYT    +   +            +  E            
Sbjct: 845  HANHLMELINELLDFRKMEQGYTQLEVAEHDMVAFAGAIGEGFSKYAESCNQKFVFTSSE 904

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE 162
             +      +R+  K+  NL   A   + +   +    V   +   +  +  NG      E
Sbjct: 905  PSVMCWFDARQMEKVFYNLLSNAFKYVEKDKGIVELQVTSDEQHVLIKVMDNGIGIHQDE 964

Query: 163  ---KFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                F +           S+I    I    V  +   +   +  E    +  V    L K
Sbjct: 965  LENIFDRFYQAGGAKSGVSSITGTGIGLALVKEIVERHHGSIRVESSPGYGSVFIVTLPK 1024


>gi|256843982|ref|ZP_05549469.1| signal transduction histidine kinase [Lactobacillus crispatus
           125-2-CHN]
 gi|256613887|gb|EEU19089.1| signal transduction histidine kinase [Lactobacillus crispatus
           125-2-CHN]
          Length = 552

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     +   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEVLEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|144898537|emb|CAM75401.1| PAS/PAC sensor hybrid histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 613

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 67/228 (29%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQ 51
            +          L AL  L   I H++ + +G I    E+L              D +++
Sbjct: 378 RQMERVLTEGQKLEALGRLAGGIAHELNNMLGPILMGAEMLLRSATLDDKNRSRCDRIIE 437

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEK 108
             +         L + R       +VD +  +    ++    +    R+           
Sbjct: 438 AAKHGRDIVRGVLAYCRQERQDLNAVDLVAVVRQFSELAGSILPPAIRLDQHIGPDQAMV 497

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +    +  +ILLNL      ++   G + +S++    + +  +   G          +I 
Sbjct: 498 MGNGGQITQILLNLANNGRDAMGGKGALAVSLEVVDGDAVLKVSDTGCGMSEK-VAARIF 556

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +        +    V  L      R+  + +       +  L 
Sbjct: 557 DPFFTTKPVGQGTGLGLSVVHGLVTAMGGRVSVKSVSGQGTTFTITLP 604


>gi|189423473|ref|YP_001950650.1| GAF sensor signal transduction histidine kinase [Geobacter lovleyi
           SZ]
 gi|189419732|gb|ACD94130.1| GAF sensor signal transduction histidine kinase [Geobacter lovleyi
           SZ]
          Length = 469

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 20/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
           +       +    L A+  + + I H++ +P+  I         +L E   +   +  I 
Sbjct: 230 LQDTRQRLVHGAHLAAIGEMAASISHELKTPLITIGGFAARLGRMLPENTPQRHYLDTII 289

Query: 55  LSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             S               K                 L D   ++ +     +    S + 
Sbjct: 290 SESHRLERLLGDILAFSRKPTICFQECNLRGVVKECLDDYVVLLGERKITLETSVPSGSW 349

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPE 162
             +  S +  ++ +NL + A  ++P+GG++ + ++          + S+  +G      E
Sbjct: 350 TVLGDSNQLKQVCINLLVNAQEAMPQGGRLQVGLRAGGDGGRPCAVVSITDSGGGI-PEE 408

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++I      +      +    V  +   +   L     DD       +L 
Sbjct: 409 LQSKIFTPFFTTKRHGTGLGLAIVNRIVQNHGGSLKVFNTDD-GAEFQVILP 459


>gi|115379878|ref|ZP_01466940.1| sensory transduction histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822776|ref|YP_003955134.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115363115|gb|EAU62288.1| sensory transduction histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395848|gb|ADO73307.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 499

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 31/240 (12%)

Query: 4   NICFNLSSMDLVALLC-----SRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            +        L A+       S   H++ +P+ ++   LEL+       +  +   +   
Sbjct: 245 QVRNRAEQEALAAVRARDEFLSMASHELKTPLTSLKLQLELVKGAMAGADSALFQRLAPK 304

Query: 53  IRLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           +R                          MR+ F +      +    +      +    + 
Sbjct: 305 MRTMERQIQRLQALNGSLLDVATLDGGRMRMDFQWVNLASLIEEAVERLDPDFERAGCEV 364

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            + V    +         ++++NL   A         + I +Q S N    ++K  G   
Sbjct: 365 LLHVEGETQGQWDPMRLDQVVVNLLSNAAKYGAGKP-IHILLQRSGNRVSLAVKDQGIGI 423

Query: 159 RFPEKFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   ++                 +  Y   +L       L  + +       +  L 
Sbjct: 424 -SSEAQARLFRKFERAVPARHYGGLGLGLYISRMLVEAMGGTLQVDSLPGQGATFTVSLP 482


>gi|42524006|ref|NP_969386.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576214|emb|CAE80379.1| two-component hybrid histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 603

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 30/238 (12%)

Query: 6   CFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
              L      A           + + H+I +P+ +I    ELL +  +  +  Q + + +
Sbjct: 363 QQELERAKEAAEAGTRAKSEFLANMSHEIRTPMNSIMGMSELLLDTELSPDQRQFVTILT 422

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------------VQ 101
            ++   L  +      +     L+ +  +   + + +                     + 
Sbjct: 423 RASSSLLNLINDILDLSKIESGLMVIEKVPFSVRESVRRALELLMIRAVEKKLDLKLEID 482

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                + +  +    ++L+NL          G  V + ++ + ++    +K  G      
Sbjct: 483 PQVPEKILGDATRFQQVLINLIGNGLKFTTHGE-VRVQLKVNGHQLWVGVKDTGIGMAPE 541

Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    FT+   G+  +        +       L  +    +          V    L 
Sbjct: 542 QMQGLFTRFSQGDSSITRRFGGTGLGLSISKQLVEKMGGTIGVTSEIGQGSVFYFTLP 599


>gi|329769298|ref|ZP_08260714.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325]
 gi|328839101|gb|EGF88686.1| hypothetical protein HMPREF0433_00478 [Gemella sanguinis M325]
          Length = 615

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 61/219 (27%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             S + H++ +P+  +++ +E L+     +  +  + +  I   +   I  +  +     
Sbjct: 388 FVSTVSHELRTPLTTMNSYIEALEEGVINDKELAPQFIDTIHKETTRMIRMVNELMQLGK 447

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLNL 122
                       +D    +  I    E        ++            +    ++  N+
Sbjct: 448 MDIKEEHYDKEFIDINKLIEQISDRFELTHPEKNFIKYIPKTPIFVEGDQDKLTQVFDNI 507

Query: 123 FMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
              A    P      + +    + N    S+K  G                      + T
Sbjct: 508 INNAIKYSPNGKNITIRVRQNYNHNRVSISIKDEGVGIPLVHIDKIFNRFYRVDKSRQRT 567

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +       +   ++ R+  +  + +  ++   L 
Sbjct: 568 MGGTGLGLALAKNIVEAHRGRIWAQSREGYGSIIFVTLP 606


>gi|323493897|ref|ZP_08099014.1| sensor protein TorS [Vibrio brasiliensis LMG 20546]
 gi|323311838|gb|EGA64985.1| sensor protein TorS [Vibrio brasiliensis LMG 20546]
          Length = 966

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H+I +P+  +  +  LL + G++ +    + + + S  
Sbjct: 459 ARQEAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLKDTGLDRQQGHYVDVINRSGT 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSWT 105
             L  +     Y+      + +  ++  +   +                 ++  ++    
Sbjct: 517 GLLAILNDVLDYSKIEAGHLEIRPVDFNLYAMVDDTKQLLNGRAQEKSLQLEYFIESDVD 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEK 163
                      ++L NL   A     +G        D       +F +   G      E+
Sbjct: 577 KFWFGDMTRIGQVLNNLVGNAIKFTDKGNVDIYVAHDPDQQGHVLFEVSDTGVGISEQEQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T        S          +       L       +  E            + 
Sbjct: 637 QTLFDAFTQASGGLSSKGGTGLGLAISKRLVEAMGGEIHLESEIGEGSRFWFSVP 691


>gi|301310672|ref|ZP_07216611.1| two-component system histidine kinase [Bacteroides sp. 20_3]
 gi|300832246|gb|EFK62877.1| two-component system histidine kinase [Bacteroides sp. 20_3]
          Length = 736

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           A+        M L  +  + + H+I +P+ AI    +LL+     E   + E + LI  +
Sbjct: 497 ARRKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 554

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           S   +  +             M  ++        +  +    Q++       K       
Sbjct: 555 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 614

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++  N    A     +   ++   +       + S+K  G      +K 
Sbjct: 615 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 673

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +     +       +       + H     +  E         +  L 
Sbjct: 674 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVGVGSKFTISLP 725


>gi|288555846|ref|YP_003427781.1| signal transduction histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547006|gb|ADC50889.1| Signal transduction histidine kinase [Bacillus pseudofirmus OF4]
          Length = 473

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 59/233 (25%), Gaps = 22/233 (9%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAI 61
            +   L   DL      S + H++ +P+  +    E LL++  + ++  + + +    + 
Sbjct: 231 EMANALEKEDLRKQTFLSNVSHELRTPLSYVKGYSEVLLEDEQLREDQKEFVSIIHNESD 290

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------------SWTGE 107
              K +               L     V+   I       +                +  
Sbjct: 291 RLSKLVNDLLDLAKIQGEQEVLSVEPTVLSALIDEAAASYLPSARKKGIEIITSSDESII 350

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFP---EK 163
            +       ++L NL   +      G  +T ++   +       +   G           
Sbjct: 351 ALIDPNRIKQVLHNLIQNSLHHCQSGDSITRTLTLERANICKIMITDTGAGMSKEALVHL 410

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +           +       +  ++   +  E        ++  L 
Sbjct: 411 GERFYRTDDARTRKYGGTGLGVAISKAIIEKHNGTIHYESELGKGTTVTICLP 463


>gi|262382099|ref|ZP_06075237.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262297276|gb|EEY85206.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 771

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           A+        M L  +  + + H+I +P+ AI    +LL+     E   + E + LI  +
Sbjct: 532 ARRKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 589

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           S   +  +             M  ++        +  +    Q++       K       
Sbjct: 590 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 649

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++  N    A     +   ++   +       + S+K  G      +K 
Sbjct: 650 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 708

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +     +       +       + H     +  E         +  L 
Sbjct: 709 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVGVGSKFTISLP 760


>gi|317049978|ref|YP_004117626.1| osmosensitive K channel signal transduction histidine kinase
           [Pantoea sp. At-9b]
 gi|316951595|gb|ADU71070.1| osmosensitive K channel signal transduction histidine kinase
           [Pantoea sp. At-9b]
          Length = 891

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 18/227 (7%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQLIRLS 56
                   L   L S + HD+ +P+  +    E+L               +++ +    +
Sbjct: 652 RLAAEREQLRNALLSALSHDLRTPLTVLFGQAEMLMLDLASEQSKYVAQANQIREQTLST 711

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSR 113
                  L   R+  G     +  + L ++                  +    E + +  
Sbjct: 712 IRLVSNMLDMARIQSGGLNLREEWVALDEVIGGALSSMGPSLKGHDFTLDLPAELVLIKG 771

Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQI 167
           +     ++  N+   +        +  I           ++  +G           F + 
Sbjct: 772 DSSMLERVFTNIIENSLKYAGNAAQHGIHAWRENARLEIAIWDSGPGIAPDALTRIFDKF 831

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             G+ ES +    +       +   +  R+  E   +        L 
Sbjct: 832 TRGDKESAVPGVGLGLAICKTIVESHGGRIWAENRAEGGASFRLSLP 878


>gi|224500462|ref|ZP_03668811.1| hypothetical protein LmonF1_12654 [Listeria monocytogenes Finland
           1988]
          Length = 459

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 64/232 (27%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P+ G + I + +        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISKVDMTKIFD 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458


>gi|313148670|ref|ZP_07810863.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137437|gb|EFR54797.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 463

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 76/232 (32%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +L+ +    +E  + IR+ + + 
Sbjct: 219 LQEAKEKAEESNRLKSAFLANMSHEIRTPLNAIIGFSDLICQTDDAEEKEEYIRIVTSNN 278

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + L+ +               ++ ++  +  L +   +          VQ+ +T ++  
Sbjct: 279 ELLLQLIDDILDLSKIEAGTMDFSYALTDINELMEDICLQMQQKNQRPGVQILFTEKEPC 338

Query: 111 LSRERA-----KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++++NL   A      G           KNE  F +K  G      +K 
Sbjct: 339 CVINTDRLRLSQVIINLMNNAMKFTAEGSITLGYRLNGQKNELYFFVKDTGIGI-PADKA 397

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +  V   S +    +      ++       +  +   +        L 
Sbjct: 398 EKVFERFVKLNSFVKGTGLGLAICRVIIERLGGTIGVDTAVEEGACFWFRLP 449


>gi|302384794|ref|YP_003820616.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302195422|gb|ADL02993.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 468

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 60/216 (27%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------R 68
           + + HD  SP+ +I   LE + +      + ++ +  +   +       + +        
Sbjct: 249 ANVSHDFRSPLTSIKGYLEAILDGTIPPEMHEKYLNRVISETDRLNKLTQGLLTLNSLDS 308

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
             +    S D    + D     E      +    ++++     +  +     ++L NL  
Sbjct: 309 KGYLNRTSFDINRVIKDTAASFEGTCNGKNITFDLTFSESIQMVYADLGKIQQVLYNLID 368

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID--SH 179
            A         + I       +   S+K  G         + + +    +     D    
Sbjct: 369 NAIKFSHADSTIYIQASGKYEKIFISIKDTGIGIPKESLKKIWERFYKTDSSRGKDKKGT 428

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +   +     +         L K
Sbjct: 429 GLGLAIVREIIQSHGENIDVVSTEGVGSEFIFSLPK 464


>gi|298482223|ref|ZP_07000410.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298271510|gb|EFI13084.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 420

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 63/232 (27%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +      ++S+  L +   + + H++ +P+ AI     L+              ++  ++
Sbjct: 179 LTIEKEHSISAEKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASGEEERKMYADILAENN 238

Query: 58  MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +                        D    L +++ + +  +       +     + 
Sbjct: 239 ERLLRLVNDIFDLSQIESGTIDFVYTEFDVNDLLRELDGIFKAKLNNSSVKLICEAHVQP 298

Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +         ++L NL   A      G        +   E  F +   G      E+  
Sbjct: 299 IIMYSERERIIQVLSNLLHNAMKFTASGEIRFGCRLEGMEEVYFFVSDTGIGI-PEEEQK 357

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I    +  +  +    +       +       L  +   +     S +L +
Sbjct: 358 KIFSRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSKVNRGSTFSFVLPR 409


>gi|293380946|ref|ZP_06626979.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Lactobacillus crispatus 214-1]
 gi|290922477|gb|EFD99446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Lactobacillus crispatus 214-1]
          Length = 552

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     +   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|289665595|ref|ZP_06487176.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1364

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +     +++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQEMVTKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARALLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKLKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLVELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVITLEK 872


>gi|317152332|ref|YP_004120380.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942583|gb|ADU61634.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 765

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 68/245 (27%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++      S+ +  +   +R+ H+I +P+ A+  + ELL E  +  +  + + +   + 
Sbjct: 365 LSRAREMAESADEAKSQFLARMSHEIRTPMNAMLGAGELLAETSLNGDQRRYVSIYQSAG 424

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSWTGEKIDLS 112
               + +R     +        L +    +   I     V         +         +
Sbjct: 425 EHLRELVRDVLDLSRFESGRFRLEETPFSLRSAIDKACAVFTLEARNKGLDLRCCVDPDT 484

Query: 113 RER--------AKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGN 156
            +R         ++L+NL   +    P+G                       F+++  G 
Sbjct: 485 PDRLVGDPTALRQVLVNLLGNSIKFTPQGSVSLGVRSVGAGHEADGQTCTLEFTVQDTGI 544

Query: 157 LARFPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VL 209
                +    F +     G+         +       L       +  +           
Sbjct: 545 GIPVDKQEVIFERFSQADGSTSRKYGGTGLGLSICRNLVTFMGGSIAVDSQPGEGTTLTF 604

Query: 210 SALLE 214
           +  L 
Sbjct: 605 TVRLP 609


>gi|262046125|ref|ZP_06019088.1| signal transduction histidine kinase [Lactobacillus crispatus
           MV-3A-US]
 gi|260573455|gb|EEX30012.1| signal transduction histidine kinase [Lactobacillus crispatus
           MV-3A-US]
          Length = 544

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     +   +    ++   S+    +    +RL+  
Sbjct: 319 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 378

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 379 DENQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 438

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 439 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSHSRKTGG 497

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 498 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 533


>gi|256849456|ref|ZP_05554888.1| signal transduction histidine kinase [Lactobacillus crispatus
           MV-1A-US]
 gi|256713572|gb|EEU28561.1| signal transduction histidine kinase [Lactobacillus crispatus
           MV-1A-US]
          Length = 552

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     +   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|229098082|ref|ZP_04229030.1| hypothetical protein bcere0020_33160 [Bacillus cereus Rock3-29]
 gi|229117100|ref|ZP_04246479.1| hypothetical protein bcere0017_33800 [Bacillus cereus Rock1-3]
 gi|228666268|gb|EEL21731.1| hypothetical protein bcere0017_33800 [Bacillus cereus Rock1-3]
 gi|228685273|gb|EEL39203.1| hypothetical protein bcere0020_33160 [Bacillus cereus Rock3-29]
          Length = 516

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 20/227 (8%), Positives = 64/227 (28%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
           + +       S  L     L + I H+I +P+ ++   L LL      +     D ++  
Sbjct: 281 LKETEKLLRKSEKLAVVGQLTAGIAHEIRNPLTSLKGFLTLLLPEINEENKWYVDVMLSE 340

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDL 111
           I          +   +       + +    + ++   ++   I     + +     K D+
Sbjct: 341 ISQMESITSQFMAMSKPQVLSVQTYNIQTLIEEVVTFLLPTAIMHSVHIIMDHFNHKHDI 400

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI 167
             +  ++      +   ++                  N  +  +   G      ++ +++
Sbjct: 401 QCDGNQLKQVFINILKNAIEAMPNGGNIFIQIKSLDNNFIVIRIIDEGCGI-PEDRISRL 459

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +       +  E+  +L      +   ++   L 
Sbjct: 460 GEPFYSLKEKGTGLGLMMCYKIIEEHHGKLHISSELNKGTIVDIQLP 506


>gi|197334363|ref|YP_002156093.1| sensor protein LuxQ [Vibrio fischeri MJ11]
 gi|197315853|gb|ACH65300.1| sensor protein LuxQ [Vibrio fischeri MJ11]
          Length = 692

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 25/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIED-------EV 49
           AK      +     +   + + H+I +P+ +I   ++     LL E  ++          
Sbjct: 317 AKTEAEKANKAK--SQFLAMMSHEIRTPLNSILGLVDIFHGSLLSEEQLDWLNQMESSSQ 374

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           + L  +S +  I R++                    I  +          + V+ +    
Sbjct: 375 LLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAKDKGITLTVTASQNVP 434

Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     ++++ NL   A      G       +   N    S+   G          
Sbjct: 435 KYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSISISVSDTGIGIASTTL-E 493

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           Q+          +        +    +  L    +  +  E   +        L 
Sbjct: 494 QLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLNVGSTFKITLP 548


>gi|184159891|ref|YP_001848230.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|183211485|gb|ACC58883.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|193078705|gb|ABO13765.2| two-component sensor [Acinetobacter baumannii ATCC 17978]
 gi|322509806|gb|ADX05260.1| phoR [Acinetobacter baumannii 1656-2]
          Length = 452

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78
            I H++ +P+  +   +E   +    +   +       S   R+  +        +++  
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L  +  ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445


>gi|222053516|ref|YP_002535878.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221562805|gb|ACM18777.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 470

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 65/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL 55
           +AK     L  ++            + H++ +P+  +    E+ L   G  DE+ +++R 
Sbjct: 229 LAKTFNITLDRLENAFNRTRQFSMDVSHELRTPLTILRGETEVGLRWGGDADELKKILRS 288

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +          +      + + +           L  L           A +KR+ +   
Sbjct: 289 NMEEINRMSDIIGDLLELSRAEEGKLVLDPVPVELHELLQDICTKAAPDAREKRIILDLP 348

Query: 106 G----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          +I LNL   A    P  GKV+++V         S+   G      
Sbjct: 349 NAASLHVAGDPARLQQIFLNLIDNAIKYTPCDGKVSLAVDSEPGWAKVSVTDTGPGIPEA 408

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                       +    V   +  +  R+    +       +  L 
Sbjct: 409 DLPHIFEQFYRVDKARNRNDGGSGLGLSMVRAFSEAHGGRVEIFSLPGSGCTFTVFLP 466


>gi|116620970|ref|YP_823126.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116224132|gb|ABJ82841.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 635

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 65/214 (30%), Gaps = 21/214 (9%)

Query: 22  ICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           + H++ +P+ AI  S EL     L E   +   + +   S   A +   F+ +     G 
Sbjct: 408 VTHEMRTPLSAIQGSSELISRYSLTEEKRQQIALLINSESKRLARMVEIFLNVERLSAGQ 467

Query: 77  VDS--------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---V 125
           ++          +    +++V          + +    E + ++ +R  +    +     
Sbjct: 468 MELKREAISVKEMMEVCVQRVTPLAERKHIAITLEPVPENLSVTGDRELMEYACYNLLTN 527

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHD 180
           A    P+  +VT S     +    ++K  G      E              +        
Sbjct: 528 AVKYSPQRTEVTASAWRDDSLVRIAVKDQGIGMDQKEVKQIFQKFYRTKKAEESGEAGTG 587

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    V  +  ++  ++            + ++ 
Sbjct: 588 IGLSIVQQIIEQHGGKIEVTSRPGAGSCFTVVVP 621


>gi|261406530|ref|YP_003242771.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261282993|gb|ACX64964.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 490

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++I   L   +    L S I HD+ +PI  I   +E + +         D+ + +I  
Sbjct: 245 LHESIQLRLRDEENRKELISNISHDLRTPITNIKGYVEGIRDGVADTPEKMDKYVNIIYT 304

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            ++     +  + L           +          D    ++R  +     +++     
Sbjct: 305 KTIDLDKLVDELFLYSKLDLKQVPFMFEHVDIIGFIDDCIEEQRYVLEEKDIRLEWKERP 364

Query: 116 -------------AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF- 160
                         + +LN+   A   + +    + IS++ S       ++ NG      
Sbjct: 365 GDPVEVIADLEKLKRTVLNIIGNAQNFMDKGQKNIGISIRLSPEWVTVEIRDNGTGIAPE 424

Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +                +       +   +  ++  E        L   L++
Sbjct: 425 AIPYIFERFYRAESSRNSSTGGSGLGLAIASQIIEGHGGQIWAESELGVGTSLYFTLKR 483


>gi|229021940|ref|ZP_04178501.1| hypothetical protein bcere0029_3070 [Bacillus cereus AH1272]
 gi|228739355|gb|EEL89790.1| hypothetical protein bcere0029_3070 [Bacillus cereus AH1272]
          Length = 369

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRL 55
           M +     +     +  + + I H+I +P+ A+    ++     L++    + ++Q I  
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNLEDTMSYEIMLQEIER 204

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-GEKIDL 111
            +      +   +         +    L  + Q++E +     V   +QV          
Sbjct: 205 INEFVSELMLLGKPKPTNYEWCNIREILLYVVQLMESYATQYKVKFHLQVDGNLPVINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P+GG + I            S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPKGGDIQIRAYKKAGENLCISIEDQGFGI-ENEKIEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKENGTGLGLMITYKIIEEHQGSIAIQSSVGVGTKVEIYLP 367


>gi|171912871|ref|ZP_02928341.1| Multi-sensor Signal Transduction Histidine Kinase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 645

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 74/242 (30%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLD--------EVGI 45
            + +  +    ++  L        + + + H++  P+ AI  +             +  +
Sbjct: 392 EQELRMHRQHEEMARLGRVAVLGEMTASLAHELNQPLTAIVTNASAARRFMNRDNPDPEM 451

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGY----TGSVDSLIGLGDIEQVIE-DFIAVDKRV 100
            ++++Q I  +   A   ++ +R           ++D    + ++  +++ D +A    V
Sbjct: 452 MNDLLQDITTAGQRAGEIIRGIRSMVKPGGAGREALDVNSLISEVLSLMKTDIMAKSSSV 511

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--------DSKNENIFSLK 152
            +    +   +     ++   L  +   +L     +  + +         S      S++
Sbjct: 512 DLDLAPQLPQVHAIAVQVQQVLMNLLMNALEAMQHLPATSRRLTVSSSSPSGEAVHISVR 571

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G          ++ D    +  D   +       +   +   L      +     + +
Sbjct: 572 DLGTGLPTDVPTRRLFDQFFSTKPDGMGMGLAIARSIVEGHGGTLEASDHPEGGAKFTII 631

Query: 213 LE 214
           L 
Sbjct: 632 LP 633


>gi|65318667|ref|ZP_00391626.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 463

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 241 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 300

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 301 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 360

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    S+K  G             +    +          
Sbjct: 361 NAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 420

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 421 GLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKLK 455


>gi|289434077|ref|YP_003463949.1| sensor histidine kinase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170321|emb|CBH26861.1| sensor histidine kinase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 459

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 62/228 (27%), Gaps = 20/228 (8%)

Query: 8   NLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAII 62
            L   +       + + H++ SP+ ++     LL           E + ++   +     
Sbjct: 231 ELEKSEAARQEFVANVSHELQSPLTSMQGFATLLASDTLTEKERAEYLAVLSEETTRLSS 290

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSWTGEKIDLSRER 115
             K +          +         +V          +    K + ++   +K++ + + 
Sbjct: 291 LTKQLLTLASLDQEAELRKKDQVQLEVQWRQLLQTTEWSWRAKEITINLELDKVNCTGDA 350

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171
               ++  NL   A    P  G + I +    +     ++ +G      +          
Sbjct: 351 ELLYQVWSNLLTNAIKFTPTSGTINIRLYQDASHAFVEVEDSGIGISEADIDKIFQRFYK 410

Query: 172 ----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     S  +       + H +   +  E   +     +  L K
Sbjct: 411 ANHSRTREEGSSGLGLSICKKIIHLHHGEIFVESKSEKGTKFTIKLPK 458


>gi|302381375|ref|YP_003817198.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192003|gb|ADK99574.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 546

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 68/245 (27%), Gaps = 35/245 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M + +   + +++      + + H+I +P+ +I ++LE L    +    D +  +++   
Sbjct: 300 MTETLSARMDAIE---RFAADVAHEIKNPLTSIRSALETLDLVRDKDKRDRLTLVLQQDV 356

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
                 +  +          +      VD    L DI  V E      +      + +  
Sbjct: 357 KRLDRLITDISNASRLDAELSRDQPRPVDLKPLLSDIVGVYETTAKPGEAPVLLDLALDG 416

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160
               +       ++  NL   A +  P G  V         D        +  +G     
Sbjct: 417 PARVMGRDGPLGQVFRNLIDNARSFSPPGRAVRVSVSRDDADPDRSLSIRVDDDGPGI-P 475

Query: 161 PEKFTQIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDD-----HNVVL 209
           PE    +      S            +    V  +   +  R++              + 
Sbjct: 476 PENLETVFQRFYTSRPRGTAFGSNSGLGLSIVRQIVEAHGGRVVASNRTGPDGSIEGAMF 535

Query: 210 SALLE 214
              L 
Sbjct: 536 EVTLP 540


>gi|260557861|ref|ZP_05830074.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii ATCC
           19606]
 gi|260408652|gb|EEX01957.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii ATCC
           19606]
          Length = 452

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78
            I H++ +P+  +   +E   D+  I     +               +      +   + 
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L  +  ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445


>gi|270294109|ref|ZP_06200311.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275576|gb|EFA21436.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 758

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 63/239 (26%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDE 48
           +  +    + S +L        + L   + H+I +P+ AI    ++L            E
Sbjct: 518 LKDHEQELIESRELAEQAELKQSFLN-NMSHEIRTPLNAIVGFSDMLANEPEFSDEERQE 576

Query: 49  VMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
            + +I  ++   +  +             +   F        L  +     ++       
Sbjct: 577 FVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQPPLQF 636

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGN 156
            +       +         ++L N    A+     G         S   E    ++  G 
Sbjct: 637 LKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKEGSIQLGYCCPSGMSEVHLYVEDTGI 696

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E+          S       +     +L+  +   R+  +  +      + +L 
Sbjct: 697 GIPHSEQKMIFERFYKRSEFSQGVGLGLSICVLIVEKMGGRIELQSEEGRGSRFTVVLP 755


>gi|269795552|ref|YP_003315007.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
 gi|269097737|gb|ACZ22173.1| signal transduction histidine kinase [Sanguibacter keddieii DSM
           10542]
          Length = 576

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54
           M K   F      L       I H++ +P+ +I   LELL +         + + + +  
Sbjct: 339 MTKAREF----ERLKDEFVGMISHELRTPLSSILGYLELLRDEEDGPLTAEQTQYLDVAE 394

Query: 55  LSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQ 101
            ++   +  +  +                S +    L    Q  E   A         + 
Sbjct: 395 RNAQRLLRLVGDLLFTAQVEAGRFPIVHQSTELESVLRAAAQTFEPVAAAASVRLRVVMD 454

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            S +      +    + + NL   A    P GG+VT+S+         +++  G      
Sbjct: 455 ESLSTVVRGDATRLGQAVDNLLSNAVKFSPAGGQVTLSLVAHDERATITVRDTGIGIPDT 514

Query: 162 EKFT---QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E      +    +  ++  +    +       +   ++ RL            +  L 
Sbjct: 515 ELDQLTTRFFRASTATSASVPGIGLGLAITKAIVVAHRGRLDVTSEVGIGTAFTVDLP 572


>gi|256830593|ref|YP_003159321.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579769|gb|ACU90905.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfomicrobium baculatum DSM 4028]
          Length = 631

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/260 (9%), Positives = 67/260 (25%), Gaps = 51/260 (19%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAI---------HNSLEL-----LDEVGIEDE 48
               + S  ++++  L + + H+I +P+  I           SLEL     L E    D 
Sbjct: 361 EEMLIQSEKMISVGGLAAGMAHEINNPLAGILQNGQVIRNRMSLELPANRKLAEELGTDM 420

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG------------------------ 84
            +          +  +  +  +      +   +                           
Sbjct: 421 ALIHGYFERRGCLRMMDSIMDSGLRAARIVENMLSFSRKNTLRMAEVDICGLLDRTLELA 480

Query: 85  -DIEQVIEDFIAVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPRGGKVTISV 140
            +   + + +     R+   +            +  ++  NL      ++    +    +
Sbjct: 481 ANDYDLKKQYDFRKIRIVREYEENLPLICCEESKIQQVFFNLIRNGAQAMGSQDRPPCFI 540

Query: 141 ---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVI-LLAHENK 194
                +  E    ++ NG      E   ++ +    +    +   +       L+   + 
Sbjct: 541 LRVMKAGKEVRIEIEDNGPGM-SEELRKRVFEPFFTTKRVGEGTGLGLSVSYFLIVENHG 599

Query: 195 IRLLPEIIDDHNVVLSALLE 214
            R+  +       V    L 
Sbjct: 600 GRIDVDSSPGKGSVFIIHLP 619


>gi|182413546|ref|YP_001818612.1| integral membrane sensor signal transduction histidine kinase
           [Opitutus terrae PB90-1]
 gi|177840760|gb|ACB75012.1| integral membrane sensor signal transduction histidine kinase
           [Opitutus terrae PB90-1]
          Length = 499

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 66/226 (29%), Gaps = 24/226 (10%)

Query: 13  DLVALLCS------RICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIRLSSM 58
              ALL +       + HD+ +P+  +  + EL  +             + ++       
Sbjct: 268 KNAALLRAMREALDNVAHDLRTPLTRLRGTAELALQNAENRGPQAEALADCVEQADDVLR 327

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDL 111
                ++      G      +   L  + +   +         +V   V+ +     +  
Sbjct: 328 LLRALMEISEAEAGMLRLEKTETDLAALARDAVELYADVADAKSVALSVEAAAAVPVLAD 387

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
           +    + + NL   A    P GG V + V    +  + S+   G      E    + ++ 
Sbjct: 388 ATRLRQAIANLIDNAVKYTPAGGGVVVRVGPEADAAVLSVSDTGPGVPAAEQARVWERLY 447

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            G+   +     +    V  +   +  R+      +   V    L 
Sbjct: 448 RGDASRSERGLGLGLSVVRAIVEAHGGRVALRNAPEAGAVFEVRLP 493


>gi|206977539|ref|ZP_03238433.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217958875|ref|YP_002337423.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|222095034|ref|YP_002529094.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|229138086|ref|ZP_04266684.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26]
 gi|206744257|gb|EDZ55670.1| sensor histidine kinase [Bacillus cereus H3081.97]
 gi|217063391|gb|ACJ77641.1| sensor histidine kinase [Bacillus cereus AH187]
 gi|221239092|gb|ACM11802.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|228645431|gb|EEL01665.1| hypothetical protein bcere0013_12100 [Bacillus cereus BDRD-ST26]
 gi|324325417|gb|ADY20677.1| sensor histidine kinase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 466

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + ++++   +    ++K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIMVTLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458


>gi|322435323|ref|YP_004217535.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321163050|gb|ADW68755.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 458

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 57/226 (25%), Gaps = 28/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I   +E L +          E +  I  ++       + + +   
Sbjct: 227 FVANVSHELRTPLTSITGYVETLLDHEAGISPQGREFLGTILKNATRMNRLTEDLLVMAR 286

Query: 73  Y--------TGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRERAKILLN 121
                       V + + + +    ++  +  ++    +      +         ++L N
Sbjct: 287 VEAATVELSPAPVPADLLVREAVAGMKGLVQENEGVLEIGTITDCQVFADHDAVMQVLSN 346

Query: 122 LFMVAHASLPRGGKVTISVQD-------SKNENIFSLKINGNLARFPE---KFTQIVDGN 171
           L   A             V           +   FS++  G           F +    +
Sbjct: 347 LIENAIKYGQPKAGGGTRVVISAREVAAPYDAVEFSVRDFGQGIASEHLNRIFERFYRVD 406

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +    V  +       +  E            L K
Sbjct: 407 KTRSRESGGTGLGLSIVRHMVQAQGGTIRAESELGEGSCFLFTLPK 452


>gi|229526782|ref|ZP_04416186.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
 gi|229336940|gb|EEO01958.1| sensor protein TorS [Vibrio cholerae bv. albensis VL426]
          Length = 984

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   +                     +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFGFTLP 690


>gi|219670671|ref|YP_002461106.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540931|gb|ACL22670.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
          Length = 713

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------- 49
               + +  + A  LL S + H+I +P+  +    E L +   E+E              
Sbjct: 475 EARMIETDKMAAIGLLASGVAHEINNPLAIVAAHSEDLLDRLNEEEPGPSQAELKTGFKT 534

Query: 50  -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105
            +  I          L F R     +  +D  I       ++E       +    Q    
Sbjct: 535 VLGQIARCKQITDRLLGFARKRDSGSDLIDIGIASAQTLGLLEHKAKQKHLRVHFQAEDN 594

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +    E  +++LNL   A  +   G  + +      N+  F ++ +G          
Sbjct: 595 LFALGNENEWQQVVLNLITNALDASAPGKVIEVRGYREDNKIQFVIQDHGEGIPQNHLKQ 654

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +        +  Y    +  + +  ++ E  +     ++  L 
Sbjct: 655 -VFNPFFTTKSPGQGTGLGLYVSYGIIVKMQGDMILESTEGQGTKVTISLP 704


>gi|196234229|ref|ZP_03133060.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196221688|gb|EDY16227.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1174

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5    ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
                L S  + A+  L   I HD  + + AI    +LL     E + M            
Sbjct: 789  EEELLQSQKMDAVGRLAGGIAHDFNNILTAILGYSDLLIGQIDERQWMYKHLSEIRKAAD 848

Query: 59   ----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                     L F R    +    +    + +++++++  I    ++      E   L  +
Sbjct: 849  FAASLTHQLLAFSRRQPLFLRVFNINDTVKNMQKMLQRVIGEHIQIHTHLKAEIGRLKAD 908

Query: 115  R---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
                 ++LLNL + A  ++P                    +++   +      ++   G 
Sbjct: 909  PSQLEQVLLNLCVNARDAMPNGGSISIETADVTYFLDDFYSVNEMPAGEYVKLTICDTGT 968

Query: 157  LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    I +    +        +       +  ++   +  +         S  L 
Sbjct: 969  GM-TADVKKHIFEPFFTTKEKGQGTGLGLATCYGIVKQSLGYITVDSQVGVGTTFSIYLP 1027

Query: 215  K 215
            +
Sbjct: 1028 R 1028


>gi|170746662|ref|YP_001752922.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653184|gb|ACB22239.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 974

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 66/244 (27%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K    +L      A   SR        + H++ +P+ AI     L+     +   ++  
Sbjct: 457 RKQAEESLRQAKEAAEEASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKDVLPVKQF 516

Query: 54  RL-------SSMSAIIRLKFMRLAFGYTGSVDSLI-----------GLGDIEQVIEDFIA 95
                    S     +    + LA    G ++               L  +E ++++   
Sbjct: 517 ENLEKILASSEHLLSLINSILDLAKVEAGRMEVKPSDFALEPVLDLCLRTVEPLVKNEGV 576

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
              R              +  +IL+NL   A      G  VT+ V+       F++   G
Sbjct: 577 RLVRDVRDPPPMLRTDEEKLRQILINLLSNAIKFTEAGS-VTLRVRSVDEGIEFAVMDTG 635

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                        + +        +     +       LA     R+  E  +      +
Sbjct: 636 IGIPAGALSAIFEEFHQVDNSATRSHSGTGLGLAISHRLARLLGGRIDVESREGEGSTFT 695

Query: 211 ALLE 214
             + 
Sbjct: 696 LTIP 699


>gi|305666831|ref|YP_003863118.1| two-component system sensory/regulatory protein [Maribacter sp.
           HTCC2170]
 gi|88709055|gb|EAR01289.1| two-component system sensory/regulatory protein (hybrid family)
           [Maribacter sp. HTCC2170]
          Length = 594

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 58/222 (26%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L + + H+I +P+  I    +LL E  +    ++ +     ++   L  +     Y+   
Sbjct: 86  LIANVSHEIRTPLNGIIGFTDLLKEDNLNQNQLEKVEAIQTASHSLLGIINELLEYSKLS 145

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSW----------------TGEKIDLSRERAKILLN 121
           + L  +   +   +  I     +  +                          + ++ILLN
Sbjct: 146 EGLESINQDDFNFDSVIDNVMYLCDTLITSEDVVLKSKIDPGIPKILKGDPAKLSQILLN 205

Query: 122 LFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NV 172
           L   A   + +G  +      + ++      F +   G                      
Sbjct: 206 LIGNAVKFVEKGEIILDVSLKNQRNKDIYLEFIISDTGIGISQENLKHIFGYFKQADSYT 265

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +       +  E       V    L 
Sbjct: 266 SVNYGGSGLGLSIVKQIIDLLGGTIEVESELGTGTVFKFTLP 307


>gi|332703304|ref|ZP_08423392.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553453|gb|EGJ50497.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 477

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 18/233 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52
           + K     + +  L ++  L S I H + +P+  I  S ++L E         +  ++  
Sbjct: 234 LLKRQGQLVQAQKLSSIGTLSSGIAHQLNNPLNNISTSSQILKEELGGEAPEFQRRMLAN 293

Query: 53  IRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107
           I   +  A       L+F R       S      +     +I+        ++     + 
Sbjct: 294 IEQETFRARDIVRGLLEFSRHKDFNPASNRVKDIVERSMLLIKSQAPAGVTLETDIPEDL 353

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEK 163
                     ++ +NL + A  ++ +     +VT      +NE   ++   G       K
Sbjct: 354 VAFCDKNGMQEVFINLLLNAVQAIDQPPGKVRVTAKDVPGRNEVRIAVSDTGRGMSEAVK 413

Query: 164 FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       ++    +  + V  L  +N+  +  E            L K
Sbjct: 414 SQVFDPFFSTKEVEVGTGLGLFIVYGLVLKNRGSISVESSVGQGATFFITLPK 466


>gi|303239891|ref|ZP_07326414.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592601|gb|EFL62326.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 587

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 59/225 (26%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             L     S + H++ +PI +I   +E L      +  + +  + +I + +      +  
Sbjct: 363 EQLRTEFVSNVTHELKTPITSIRGFIETLKSGAINKPDVSERFLDIIDIEAERLHELIND 422

Query: 67  ---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGEKIDLSRER 115
              +          D               +  +  +         V             
Sbjct: 423 ILSLSEIENKLSDTDLESFSLKSIIDGVFEVMENIAIEKNVLLNNTVDEKILIKANRNRM 482

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +++LNL   A       G VT+  Q    + + S+K  G     P+   +I +      
Sbjct: 483 KQLVLNLVDNAIKYNIPTGSVTVDAQRVGGKVVISVKDTGIGI-PPDHIPRIFERFYRVD 541

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  + +     +               L 
Sbjct: 542 KGRSRDMGGTGLGLSIVKHIVNLYNGDIKVSSEVGKGTEFIIQLP 586


>gi|260219784|emb|CBA26662.1| hypothetical protein Csp_H39720 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 280

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 62/220 (28%), Gaps = 10/220 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K+    L+S    +LL     H++ SP+  I   LEL+          ++ R  S   
Sbjct: 61  LVKSRDTLLASQK--SLLA-NASHELRSPLARIRMGLELMGSSPSPAFKQEISRNISELD 117

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +  + +  +       D           +        + Q+     ++ +      +  
Sbjct: 118 QLIEEILLASRLDAKEADLGTIEAVELIGLAAEECARNQAQLDVEAAELAVPGVAKLLRR 177

Query: 121 NLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174
            +  +   +   G        +   +  +  ++ +G     PE+  +I +          
Sbjct: 178 AVRNLLENARRYGAGEVHLNLRQDGDWAVLQVRDSGPGV-PPEQQERIFEPFYRLPGASE 236

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +A  +   +      +        L 
Sbjct: 237 REGGVGLGLALVKSIAERHGGSVKCSNRPEGGACFEIRLP 276


>gi|239904905|ref|YP_002951643.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794768|dbj|BAH73757.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 823

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/251 (9%), Positives = 65/251 (25%), Gaps = 38/251 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLI 53
           + +++        +     S + H++ +P+ ++    +++           +     ++ 
Sbjct: 352 LVRDVTVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFLELVVPALPPGDARVA 411

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----- 108
           R +          +      T  VD ++ +  +E    ++      +             
Sbjct: 412 RGAGQIRENLDIIVAEGERLTELVDDVLDIAKMESGRCEWDMEPVSLAAVADHAVKAAAP 471

Query: 109 --------------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
                               +       ++LLNL   A       G V +S      E  
Sbjct: 472 LAARKGLALTADIASDLPAVMADRDRLVQVLLNLIGNAVKFTT-SGWVRLSAVAVDGEVR 530

Query: 149 FSLKINGNLARFPE---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
            ++  +G      +    F +                +       +   +  R+  E + 
Sbjct: 531 VAVADSGAGIAAKDLETIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWAESVP 590

Query: 204 DHNVVLSALLE 214
               V   +L 
Sbjct: 591 GQGSVFRFILP 601


>gi|255280004|ref|ZP_05344559.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255269777|gb|EET62982.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 380

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 54/219 (24%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           L     S + H++ +PI  I N  ELL           E  + I  +SM     +  +  
Sbjct: 135 LKTDFVSNVSHEMKTPIAIIKNYAELLQTASVTEEQRREYAENIEKASMRLSNLISNILK 194

Query: 70  ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRERAKI 118
                            +                      + ++               +
Sbjct: 195 LNKLENQTIVPDPETYDVCRQLCECILQFEESWDDKELELQTEIEDIAMVEADESLLELV 254

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVEST 175
             NL   A     +GG VT+     +     S+   G           F +   G+   +
Sbjct: 255 WNNLLSNAIKFTEKGGMVTVKQTSDEKTVTVSVTDTGCGMAPDSVKHIFDKFYQGDTSHS 314

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + + I    V  +   +   +     +         L 
Sbjct: 315 KEGNGIGLALVKRVLELSDGNIQVFSREGEGSTFVVTLP 353


>gi|224369361|ref|YP_002603525.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223692078|gb|ACN15361.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 390

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 61/236 (25%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVM 50
           N    +    L++L  L + + H+I +P+  I N  +L+                    +
Sbjct: 155 NQAKLMHRDKLISLGRLSASVVHEINNPLAGILNYAKLMIKMLKQGELDDQRRIRFAAHL 214

Query: 51  QLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105
            L+   +          L F R        V     +     +           + V   
Sbjct: 215 NLVASEAERISTIVSSLLTFSRKNEFTITPVSMDELVERSLVLARHRLELSGIELCVHVE 274

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARF 160
            E      +   +   L         ++  GG++ +S        +    +  +G     
Sbjct: 275 KEIPLFRGDFNLLQQCLINLIFNGIDAMEGGGRLGVSAAFCPESKKVSLKVSDSGTGIDA 334

Query: 161 PEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 I +    +  + H   +    V  +   +   +  +         +  + 
Sbjct: 335 GNL-EHIYEPFFTTKDEGHGVGLGLSIVFGIMERHGGGVTVDSTPGRGSTFTLEIP 389


>gi|223938396|ref|ZP_03630290.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [bacterium Ellin514]
 gi|223892965|gb|EEF59432.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [bacterium Ellin514]
          Length = 453

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 80/235 (34%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-----------LDEVGIED 47
           + ++         L +L  L + + H+I +P+ AI   L             L++  +  
Sbjct: 215 LVESTAMIERQEKLASLGVLAAGVAHEIRNPLTAIKARLFTQQKALTVGSPELEDALVIG 274

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +       +   +          +  +L  + D+  +  +  ++D +++++  G+
Sbjct: 275 NEINRLERIVKDFLQFARPADPKLKLMSAEKTLRDVRDLMALQLERSSIDMKLELNSAGQ 334

Query: 108 KIDLSRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLAR 159
            +  + +  ++L+NL   A  S+P+           VT     S    I  ++  GN   
Sbjct: 335 ILADAAQIKQVLINLVQNAAESIPQKGTVTLRERKDVTRLNGQSVPVVILEVEDTGNGI- 393

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   ++ D    +      +       +  ++   L  +   +       +L 
Sbjct: 394 SAEVQKRLFDPFFTTKDSGTGLGLSIAARIIQKHGGLLEFQTQVNRGTTFGIVLP 448


>gi|167629981|ref|YP_001680480.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167592721|gb|ABZ84469.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 703

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/247 (9%), Positives = 60/247 (24%), Gaps = 36/247 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK             L  + + H+I +P+  I   ++LL +  + +E     R     +
Sbjct: 292 MAKERAEAADRAKSAFL--ATVSHEIRTPLHGIIGMIDLLLDTALTEEQASYGRTIGELS 349

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSW 104
            +        +  +    G ++  +   +              +  +  + +   +    
Sbjct: 350 RLLSSIINDILDFSKMEAGRIELEVVDYELRAVVNDVVNLLRVRSEQKNLDITCDIDREV 409

Query: 105 TGEKIDLSRERAKILLNLFMVAHA-----------SLPRGGKVTISVQDSKNENIFSLKI 153
                       ++L+NL   A             ++    + +  V +      F +  
Sbjct: 410 PPFLRGDPIRLRQVLINLGGNAVKFTEKGKVALRIAMDSRAEQSDPVNEVARFLRFEICD 469

Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G      E   ++                   +       L       +    I     
Sbjct: 470 TGIGI-TDEVAPRLFQPFSQADMSTARRYGGTGLGLAISKRLVELMGGEIGFRSIPGLGT 528

Query: 208 VLSALLE 214
                + 
Sbjct: 529 TFWFTMP 535


>gi|85859694|ref|YP_461896.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85722785|gb|ABC77728.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 614

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 67/232 (28%), Gaps = 22/232 (9%)

Query: 4   NICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
                L  +  L +L  L + + H+I +P+ AI  + + L       E    +E   +  
Sbjct: 371 EFERRLEKAERLSSLGQLAAGVAHEIRNPLNAISMASQRLKREFMPAEPEKAEEFQNMAG 430

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTG 106
           +           +     ++ S    +             + + E+  +    ++  W+ 
Sbjct: 431 VIRDEIRRLNGIIEEFLTFSKSRRLDMRDYSVTEVLRKMTDLIREEAESRGITLKTEWSD 490

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPE 162
           E + +  +  K+   LF +   ++               + ++  I  +   G      E
Sbjct: 491 EPVIIPMDVDKLQQALFNLVKNAMESISGGGSITISLSNEDRHRRIIRIADTGCGMTEEE 550

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +    +      +       +   +   +     +        +L 
Sbjct: 551 VK-KIFNPEYTTKQKGLGLGLSLAHEIIRGHGGEIRVLSREKVGTTFELILP 601


>gi|17231477|ref|NP_488025.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17133120|dbj|BAB75684.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 614

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 61/240 (25%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + +     +  ++  + +     + + H++ SP+  I     LL    +  E ++    S
Sbjct: 222 LERERAARIE-LERASRMKDEFLAIVSHELRSPLNGILGWSRLLRTRKLSPEKIEQALES 280

Query: 57  SMSAII---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                                +       V     +  I+  ++    +     +     
Sbjct: 281 IERNAQAQTQLIEDLLDISRIIRGNIRLLVRPTKLIPVIQAALDTVRPIANTKSIQIISR 340

Query: 108 KIDL-------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           +++ NL   A    P GG+V I ++  +      +   G     
Sbjct: 341 LNFDIGLVSADPERLQQVIWNLLSNAVKFTPEGGRVEICLEQVETNVQIQVIDTGTGISP 400

Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                 F +    +           +    V  L   +  ++      +      +  L 
Sbjct: 401 EFLPYVFDRFRQADATTTRNQGGLGLGLAIVRNLVELHNGKVSVASPGEGQGATFTVQLP 460


>gi|299137309|ref|ZP_07030491.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
 gi|298600714|gb|EFI56870.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX8]
          Length = 656

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 64/230 (27%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +     L +  + A   + + I H+I +P+ A+ N L LL     +D+    +  +   
Sbjct: 421 RRIEQSLLQAEKIAATGRMAATIAHEINNPLEAVMNLLYLLRPKITDDDGRGYLATAEDE 480

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTGEKID 110
                   +   GY     +                 + R                + + 
Sbjct: 481 LGRVSHIAKQTLGYYREHAAASLASLSVITEHALTIYEPRCAIAGIGIKKFFDSKTKVVF 540

Query: 111 LSRERAKILLNLFMVAHASLPRGGK---VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              E  +++ NL   +  ++P GG        V+      + +++  G            
Sbjct: 541 RRGEMMQVISNLIANSIYAMPTGGTLSVSVSDVRSQGEGIVLAIEDTGVGITPDVLPRVF 600

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII---DDHNVVLSALLE 214
                  T     I  +        +  R+  E     +DH   +   L 
Sbjct: 601 EAFFTTRTTVGTGIGLFVAKQFVEGHGGRISIESRSDPEDHGTTVRIFLP 650


>gi|298483120|ref|ZP_07001300.1| two-component sensor histidine kinase [Bacteroides sp. D22]
 gi|298270637|gb|EFI12218.1| two-component sensor histidine kinase [Bacteroides sp. D22]
          Length = 482

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G V I  +  +N     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|294643491|ref|ZP_06721301.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292641170|gb|EFF59378.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 479

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 301

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 302 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 361

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G V I  +  +N     ++  G    
Sbjct: 362 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 422 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 478


>gi|281355007|ref|ZP_06241501.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
 gi|281317887|gb|EFB01907.1| multi-sensor hybrid histidine kinase [Victivallis vadensis ATCC
            BAA-548]
          Length = 1560

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59
            + K +    ++    +   + + H++ +P+ A+    ELL        E ++ +R  S +
Sbjct: 1174 LQKAMEQAQAADRAKSYFLATVSHELRTPLNAVIGFSELLQGGDVAAAEQLEYLRSISFA 1233

Query: 60   AIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                L  +      +                       +        +         V+ 
Sbjct: 1234 GNALLNLIYDVLDLSKLEADQLNLVLADTDAGQLVQEVVAVFRLKAMEKDLKLTVECVNL 1293

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLAR 159
                   +    +++LNL   A      G     +V            I  +   G    
Sbjct: 1294 EQPLRLDNLRLRQVVLNLVGNAVKFTSAGSVSVRAVFQPDPGGETGMLIIRVADTGPGI- 1352

Query: 160  FPEKFTQIVDGNV-------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             PE   +I D  V         + +   +       L +     +  E       V +  
Sbjct: 1353 SPESRKKIFDPFVQGESTRGTHSYEGSGLGLAISQRLVNRMGGEIRLESELGSGSVFTVR 1412

Query: 213  L 213
            +
Sbjct: 1413 I 1413


>gi|237712780|ref|ZP_04543261.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262409729|ref|ZP_06086267.1| phosphate regulon sensor kinase PhoR [Bacteroides sp. 2_1_22]
 gi|294808001|ref|ZP_06766778.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229447192|gb|EEO52983.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262352382|gb|EEZ01484.1| phosphate regulon sensor kinase PhoR [Bacteroides sp. 2_1_22]
 gi|294444814|gb|EFG13504.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|295084583|emb|CBK66106.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           xylanisolvens XB1A]
          Length = 482

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G V I  +  +N     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGHVVIGAKQDENWIELYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|228920267|ref|ZP_04083615.1| hypothetical protein bthur0011_12830 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839466|gb|EEM84759.1| hypothetical protein bthur0011_12830 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 423

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQSEKKLSIQIASYRLDNFVRITFTDNGTGI-PRAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     ++     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNEN-GTTFTISIP 409


>gi|228957833|ref|ZP_04119573.1| hypothetical protein bthur0005_13460 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801749|gb|EEM48626.1| hypothetical protein bthur0005_13460 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 423

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQENVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKI 109
              +       +              L +  Q +         + +              
Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQSEKKLSIQIASYRLDNFVRITFTDNGTGI-PRAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     ++     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNEN-GTTFTISIP 409


>gi|149192357|ref|ZP_01870561.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio shilonii AK1]
 gi|148833815|gb|EDL50848.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio shilonii AK1]
          Length = 592

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 64/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------VGIEDE 48
           + +     + +  L  L  + + I H++ +P+ AI +  E                    
Sbjct: 353 LRQAHDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGQRFIDKNKVDRAKDNLQR 412

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---- 104
           ++ L    +  +     F + +     S   L  +      +        RV +      
Sbjct: 413 IVALTERMAKISQQLKSFAKRSDANELSRIKLAPVIFSTIELIQPQLKSHRVTLDCKIGQ 472

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP 161
                     +  ++L+NL   A  ++    +  +  +++  + +    +  +G      
Sbjct: 473 QDTLVQINPIQVEQVLINLLTNAMQAMHDSERKRLELTIEQGQTKVTIHIDDSGPGLDGN 532

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                + +    +  +   +       +      ++            S  L 
Sbjct: 533 SIAE-LFEPFYTTKENGLGLGLSISQQIIQNLNGKIRVARSPLGGARFSVELP 584


>gi|152994395|ref|YP_001339230.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150835319|gb|ABR69295.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 1310

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 64/237 (27%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    N +     +   + + H+I +P+ +I     L  +  + D+    I   S SA 
Sbjct: 540 AKEAAENANQAK--SEFLANMSHEIRTPMNSIIGMSSLALQTPLNDKQRGYIEKVSHSAE 597

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------------VQVSWT 105
             L  +     ++      + + ++  ++   I                     +     
Sbjct: 598 SLLNIINDILDFSKIEARKMDIENVPFMLPSLIHKVAHVLELKIEEKGLELIIDIDAEVP 657

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161
            + +       +ILLNL   A     +G  +            N   FS++  G      
Sbjct: 658 QQVVGDPTRLRQILLNLGNNAVKFTQQGEIIIRAAHSKNNQDDNIIHFSVQDTGIGISKD 717

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           ++       +              +       L       +  E  ++        +
Sbjct: 718 KQNNLFQSFSQADTSTTRRFGGTGLGLAISKRLIQLMGGDIWVESEENKGSTFHFTI 774


>gi|116748449|ref|YP_845136.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697513|gb|ABK16701.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 557

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 78/243 (32%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           + +        M+ + LL   + HD  + +G I    EL    + +     + ++ I+ +
Sbjct: 172 LLEEQYRQAQKMEAIGLLAGGVAHDFNNLLGVIMGYSELCLTTIHKESPLYDNIEHIKNA 231

Query: 57  SMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            +         L F R        VD    + + E+++   I  D +++ +   +   + 
Sbjct: 232 GLRAATLVRQLLAFSRKQILDPRVVDLNTIISETEKMLRRLIGEDIQLESTLEPDLWPVR 291

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDS---------------KNENIFSLKIN 154
            + +++   +      A  ++P GG++TI   +                    +  +  N
Sbjct: 292 IDPSQLEQVILNLAVNARDAMPDGGRLTIRTANVTLDDSFAREQVEAVAGPYVLLEVTDN 351

Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      +   +I +    +        +    V  +  ++   +            S  
Sbjct: 352 GAGI-DKDTLRRIFEPFFTTKEKGRGTGLGLATVYGIIKQSSGHISVRSRPRCGTTFSIY 410

Query: 213 LEK 215
           L +
Sbjct: 411 LPR 413


>gi|77920349|ref|YP_358164.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77546432|gb|ABA89994.1| GAF sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 764

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 64/232 (27%), Gaps = 20/232 (8%)

Query: 1   MAKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
           + +     +    + AL    + + H++ +P+ +I      L         E      ++
Sbjct: 519 LRETQERLIQGEKMAALGETAASVTHELRNPLVSIGGFARRLARSLPEGTREQEYSGIIV 578

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106
           + +R         L F +         D +  + ++  + ED +       V        
Sbjct: 579 REVRRMEEMLTNILGFSKKQMLCIADCDLIKVIEEVLVLEEDALREGAVRLVRELSDDLA 638

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 ++  ++++NL   A  ++        +   +           ++  G       
Sbjct: 639 AIQGDEQKLRQVIVNLVDNARQAMRDGGILIVRAYRTSLRGDRAVAVEIEDTGGGIPAN- 697

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +      +    V  +   ++  +  +  +         L 
Sbjct: 698 ILRNIFNPFFTTRKQGTGLGLPIVHRIVEHHQGEIEVQNTE-RGARFVLRLP 748


>gi|256839617|ref|ZP_05545126.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738547|gb|EEU51872.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 771

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           A+        M L  +  + + H+I +P+ AI    +LL+     E   + E + LI  +
Sbjct: 532 ARQKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 589

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           S   +  +             M  ++        +  +    Q++       K       
Sbjct: 590 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 649

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++  N    A     +   ++   +       + S+K  G      +K 
Sbjct: 650 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 708

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +     +       +       + H     +  E         +  L 
Sbjct: 709 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVGVGSKFTISLP 760


>gi|239997165|ref|ZP_04717689.1| putative two-component member protein [Alteromonas macleodii ATCC
           27126]
          Length = 1033

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 59/216 (27%), Gaps = 24/216 (11%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL----------- 69
            + H+I +P+ AI    +L+    + +E    +   + SA   L  +             
Sbjct: 491 NMSHEIRTPMNAIIGFSDLMLGEALREEQKSHLTTINRSARSLLHLLNDILDSAKLDKGK 550

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--SRERAKILLNLFM 124
               +      + L  +     +      V   + V  +             ++L NL  
Sbjct: 551 LDLDYRDFLIREELDLVISTFWLEAKRKKVGLVLNVDDSVANGYRGVPERMRQVLNNLIG 610

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            A       G+VTI+V+  +    F +   G      E+  ++ D        +      
Sbjct: 611 NAVKFT-HEGEVTINVKSDEKYVYFDVTDTGIGM-TQEQVERVFDPFSQADASMSRKYGG 668

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       L       +            +  L 
Sbjct: 669 TGLGTTISKQLVELMGGNICATSEKGKGTTFTFRLP 704


>gi|162452641|ref|YP_001615008.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161163223|emb|CAN94528.1| Hybrid Histidine Kinase [Sorangium cellulosum 'So ce 56']
          Length = 961

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    +S +       + + H++ SPI AI     +L     E   +           
Sbjct: 549 ARDEAERVSRVK--DDFVATLSHELRSPINAILGWARILRGRAPEPPTLARGLEVIERNA 606

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------------- 108
                M         + S     D++ V    +       +    E              
Sbjct: 607 RLQADMVSELLDMSRIVSGKLRLDVQPVDLPSVIRSALEAIQLAAETKGIAVASSIDPEA 666

Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +++ NL   A    P GG++ ++++ +      S+   G          
Sbjct: 667 SSLRGDPARIHQVVWNLLSNAVKFTPPGGRIDVALRRAGAHAALSVTDTGMGIAPQFLPH 726

Query: 166 -----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
                +  D +         I    V  L   +   +      +H     +  L 
Sbjct: 727 LFERFRQADASSTRKHGGLGIGLSIVKHLVELHGGTVEVASQGEHLGATFTVTLP 781


>gi|153009454|ref|YP_001370669.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
 gi|151561342|gb|ABS14840.1| multi-sensor hybrid histidine kinase [Ochrobactrum anthropi ATCC
           49188]
          Length = 857

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 67/241 (27%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 468 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 527

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 528 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 587

Query: 114 --ERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P                  K+        +  +F ++  G 
Sbjct: 588 LGQFEQVAVNLAVNARDAMPDGGEITLRTRNVSTQEVAKLHYRDLPEADYVVFEVEDTGT 647

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 648 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 706

Query: 215 K 215
           +
Sbjct: 707 R 707


>gi|119483262|ref|ZP_01618676.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
 gi|119458029|gb|EAW39151.1| sensory transduction histidine kinase [Lyngbya sp. PCC 8106]
          Length = 1710

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 66/252 (26%), Gaps = 39/252 (15%)

Query: 1    MAKNICFNLSSMDLVAL---LC-----SRICHDIISPIGAIHNSLELLDEVGI-EDEVMQ 51
            + +     L      A    L      + + H++ +P+ AI    +LL        E  +
Sbjct: 1224 LERQRARELQREKEAAESANLAKSRFLANMSHELRTPLNAILGFTQLLLRQPQFSGEPSE 1283

Query: 52   LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
             + +   S                      +++        +   +      +     + 
Sbjct: 1284 YLNIIHRSGKHLLGLINDILTLSKVEAGRIYLKTKPFDLSLLLKTLENMFSLKAANKRLQ 1343

Query: 96   VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNEN 147
            ++ +   +     I    +  ++L+NL   A      G              +  +    
Sbjct: 1344 LEIKADANVPRGLIGDEDKLHQVLINLLSNAIKFTSFGEVCLTVRSQPVPAEMSSNSCYL 1403

Query: 148  IFSLKINGNLARFPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEII 202
             F ++  G    F E   +I +  +++        S  +              ++  E  
Sbjct: 1404 QFEVRDTGAGINFDEL-EKIFEPFIQTEAGEKVKQSTGLGLAISREFVELMGGKITVESQ 1462

Query: 203  DDHNVVLSALLE 214
              H  V    + 
Sbjct: 1463 LKHGSVFQFTIP 1474


>gi|327308180|ref|XP_003238781.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
 gi|326459037|gb|EGD84490.1| serine/threonine protein kinase [Trichophyton rubrum CBS 118892]
          Length = 2415

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 29/238 (12%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
            N+     +    ++  + I HD+ +P+  +    ELL     +   +  V  +   +   
Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1934

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106
              +    +  +    G +   I   +                  +    V+    +    
Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLDTVEDLDSIDPDL 1994

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
              +       +I +NL   ++   P G     ++ +            +   G      E
Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPVGSVTVRAIVEEDTPEKIRVTCKVADTGIGI-SEE 2053

Query: 163  KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
            +  ++             +     +       +  +    R+  +  +     ++  L
Sbjct: 2054 QLDRLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|296185127|ref|ZP_06853537.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296049961|gb|EFG89385.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 487

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 76/235 (32%), Gaps = 28/235 (11%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----------VGIEDEVMQLIRLS 56
            L    L     S I H++ +P+  I ++L+LL+E              E + + +I+ +
Sbjct: 217 ALEYNKLRTEFFSNISHELKTPLTIILSALQLLNEKNSTHLNEKINENTEKKYIDIIKQN 276

Query: 57  SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           S   +  +  +                      +    +  V E   +   ++      E
Sbjct: 277 SYRLLRLVNNIIDLTKIDSDFFDIQLKNLNVVEVVENTVLSVAEYIKSNGIKITFDTDVE 336

Query: 108 KIDLSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
           +  ++ +  +   I+LNL   A       G + +S+ D ++  I S+K +G      +  
Sbjct: 337 EKIMAIDIDQFERIILNLISNAIKFAKPEGNIWVSLYDKQDHLIISVKDDGKGIPKDKLP 396

Query: 163 -KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +       +   +    V  L  ++  ++            +    
Sbjct: 397 IIFERFYQIDKSLSRECEGSGVGLAIVKSLVEKHGGKITVNSTLGVGSEFTMKFP 451


>gi|292670813|ref|ZP_06604239.1| sensor histidine kinase [Selenomonas noxia ATCC 43541]
 gi|292647434|gb|EFF65406.1| sensor histidine kinase [Selenomonas noxia ATCC 43541]
          Length = 419

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 65/221 (29%), Gaps = 24/221 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRL-- 69
              +   H++ +P+  +  S +LL            +V++ +R         +  +    
Sbjct: 195 QFAADASHELRTPLAVVLASADLLRSDTSITSPFLKQVIEDVRDEVKKMTKLVGDLLTVA 254

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120
                        +D +       +++  F      V      ++ +L  +     +++L
Sbjct: 255 RTDGSANQIKPVRMDLVAAAQKTIRIMRPFAEKKDIVIEEILPKQAELYADEQKIRQLIL 314

Query: 121 NLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNV------E 173
            L   A    P  G++T+ +  ++      S+   G     PE   +I D          
Sbjct: 315 ILVDNAVKYTPEHGRITLCIDQAEKGYIHLSVADTGIGI-EPEHQERIFDRFYRVDKARS 373

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  + +       +   +   +  E            L+
Sbjct: 374 RRMGGNGLGLAIAQEIVEAHDGTISVESEVGKGTTFHVSLK 414


>gi|146306001|ref|YP_001186466.1| sensor protein PilS [Pseudomonas mendocina ymp]
 gi|145574202|gb|ABP83734.1| Sensor protein PilS [Pseudomonas mendocina ymp]
          Length = 530

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 69/219 (31%), Gaps = 19/219 (8%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL---- 64
           + L +L  L + I H+I +P+GAI ++ +LL E   ++    +L ++    +        
Sbjct: 305 LKLASLGRLTAGIAHEIRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIE 364

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
              +  R        +D    L             D+++ +   G  +    +  ++   
Sbjct: 365 NVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPADRQIHLETQGGSLQTRMDPHQLTQV 424

Query: 122 LFM---VAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L            +  ++           S +  +  +  +G     PE+   I +    
Sbjct: 425 LTNLVQNGLRYSAKQHRIGQVWLRLFRDPSSDLPVLEILDDGPGV-PPEQEQHIFEPFYT 483

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +      +  Y    L   N+ RL  +  +         
Sbjct: 484 TENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRIT 522


>gi|15605780|ref|NP_213157.1| histidine kinase sensor protein [Aquifex aeolicus VF5]
 gi|2982944|gb|AAC06560.1| histidine kinase sensor protein [Aquifex aeolicus VF5]
          Length = 339

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 70/212 (33%), Gaps = 8/212 (3%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             +  V  L   + H + +P+  I  +LE L++     E +++I+ + +S    +  + L
Sbjct: 127 QKLSSVGYLALGVAHQLNTPLATISLALEELEKKCGSCEEIEVIKNALISCKNTVDKLLL 186

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRERAKILLNLFM 124
                 + D +     +E V+E      K   V                +   ++LNL +
Sbjct: 187 FARKDNNKDLVDTKKAVEDVLELLRVYAKERGVIIEKELESVYMFGNETDIRHVVLNLVL 246

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQ 182
            A  +  RG KV + ++    E I  ++  G      E   +I           +   + 
Sbjct: 247 NAIQASDRGKKVRVFLKKEGEELILIVEDEGKGIPPEEV-DKIFLPFYHGKDKREGSGLG 305

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  +      ++          +    L 
Sbjct: 306 LAIVNDIVKSYGGKINLRSAPGKGSIFEVHLP 337


>gi|253564070|ref|ZP_04841527.1| FrrD [Bacteroides sp. 3_2_5]
 gi|251947846|gb|EES88128.1| FrrD [Bacteroides sp. 3_2_5]
 gi|301161630|emb|CBW21170.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 479

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
           + KNI     L S        S I H++ +PI AI  SL+LL++          E     
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKN 301

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +   S     I  + + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 302 IRDNSQRLLDITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVD 361

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +               +L NL   A       G+V I V+  K      ++  G    
Sbjct: 362 YPQEKIPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGVRHKKEYIELYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  +            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSEPGKGSCFVIRLK 478


>gi|229012616|ref|ZP_04169789.1| hypothetical protein bmyco0001_30590 [Bacillus mycoides DSM 2048]
 gi|228748639|gb|EEL98491.1| hypothetical protein bmyco0001_30590 [Bacillus mycoides DSM 2048]
          Length = 418

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 16/226 (7%)

Query: 4   NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
            I   +   +   + + L + I H+I +P+  +    +LL ++   +    + + +  + 
Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252

Query: 60  AIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  +      T   +                 +I  +   +    K+   + +   
Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              + +    L N+      ++  GG + I++Q  K   +  +   G      +   +I 
Sbjct: 313 NANTEKFKICLTNIIQNGIEAMKNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIK-RIA 371

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +T     +       +  E    +  E         S  + 
Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417


>gi|148264881|ref|YP_001231587.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter uraniireducens Rf4]
 gi|146398381|gb|ABQ27014.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Geobacter uraniireducens Rf4]
          Length = 351

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 75/225 (33%), Gaps = 20/225 (8%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED---------EVMQLIRLSS 57
           L +  L A+  L + I H+I +P+G + +++  L++               VM+ I    
Sbjct: 119 LQAEKLFAMGQLATCITHEIGNPLGIMKSTMRFLNDHLTRMGGDLTMYSQVVMENIDRMH 178

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSR 113
                  +F R         D    L  I   +E        V                 
Sbjct: 179 ELLKDISEFSRPNKEQIVFHDICSSLSQILHFVEKECEGHGVVIEASIEDNLPIVCCNPH 238

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVD 169
              ++ LNL   +  ++P GGK +++ +    +     +  +  +G      +  T I  
Sbjct: 239 RLKQVFLNLVKNSIEAMPNGGKFSVAAKRVDLDGKDAVLVEVTDSGIGISEKDMKT-IFK 297

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  + + +  + V  +  E+  R+     +     +S LL 
Sbjct: 298 PFHTTKCNGNGLGLFIVRNIVREHNGRITVTSKEGVGTTVSILLP 342


>gi|118590844|ref|ZP_01548244.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
 gi|118436366|gb|EAV43007.1| Multi-sensor Hybrid Histidine Kinase [Stappia aggregata IAM 12614]
          Length = 774

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 59/225 (26%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74
           A L   I H+I +P+  I    ELL +  +  E    +R  + S    L+ +     Y  
Sbjct: 256 AFLA-TIGHEIRTPLNGILGMAELLAQKPLPAEESGYVRTITRSGRALLEMINEILDYAK 314

Query: 75  -------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                           D +     + +        D ++ +    +   +  +  ++   
Sbjct: 315 IEYGSQQSEEIIFRLDDLVRDTAAVVEGQVLEQNNDLKLHIDPALDGAFIKSDPTRLKRI 374

Query: 122 LFMVAHASLPRGGKVTISVQDSKNEN-------IFSLKINGNLARFPEKFTQIVDGNV-- 172
           L  +   ++      ++ ++ +             S++ +G       +       +   
Sbjct: 375 LLNLLSNAVKFTENGSVWLEVTAGNVTDETLELNVSVRDSGIGIASDAQKQLFTAFHQVD 434

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +    +  +            S  + 
Sbjct: 435 SSISRRFGGTGLGLAICKQIVEAMQGTIGVSSTPGEGATFSFTVP 479


>gi|53711874|ref|YP_097866.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52214739|dbj|BAD47332.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 479

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
           + KNI     L S        S I H++ +PI AI  SL+LL++          E     
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKN 301

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +   S     I  + + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 302 IRDNSQRLLDITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVD 361

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +               +L NL   A       G+V I V+  K      ++  G    
Sbjct: 362 YPQEKIPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGVRHKKEYIELYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  +            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSEPGKGSCFVIRLK 478


>gi|60680102|ref|YP_210246.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|265765240|ref|ZP_06093515.1| FrrD [Bacteroides sp. 2_1_16]
 gi|18033127|gb|AAL56997.1|AF329100_4 FrrD [Bacteroides fragilis]
 gi|60491536|emb|CAH06288.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis NCTC 9343]
 gi|263254624|gb|EEZ26058.1| FrrD [Bacteroides sp. 2_1_16]
          Length = 479

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
           + KNI     L S        S I H++ +PI AI  SL+LL++          E     
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDKRVGSLNGEQEQLSKN 301

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +   S     I  + + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 302 IRDNSQRLLDITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVD 361

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +               +L NL   A       G+V I V+  K      ++  G    
Sbjct: 362 YPQEKIPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGVRHKKEYIELYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  +            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSEPGKGSCFVIRLK 478


>gi|332667142|ref|YP_004449930.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332335956|gb|AEE53057.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 1099

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 60/237 (25%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           +       + +       + + H+I +P+ AI    ++L     +D+  + +     S+ 
Sbjct: 715 QAEKEKAQASERAKHQFLANMSHEIRTPMNAIKGMTDILLRRNPKDDQKEYLEGIKQSSD 774

Query: 62  IRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTG 106
             L  +      +      V+       + +++ +   + +                   
Sbjct: 775 SLLIIINDILDISKIEAGKVELENEPFSVVELVNNVHTIMQFKAEEKGLELLKDIPEENL 834

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +    +ILLNL   A     +      V       K    F +   G      ++
Sbjct: 835 TVQGDATRLRQILLNLIGNAIKFTEKGVVTTSVKSEQSGEKVNVHFIISDTGIGI-DQDR 893

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I                   +       L   +  ++  E            + 
Sbjct: 894 MDKIFKSFEQAYSDTSRKFGGTGLGLSISKKLVELHGGKIWVESEKGKGSQFHFTIP 950


>gi|319902368|ref|YP_004162096.1| histidine kinase [Bacteroides helcogenes P 36-108]
 gi|319417399|gb|ADV44510.1| histidine kinase [Bacteroides helcogenes P 36-108]
          Length = 294

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 58/232 (25%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           + +       +  L     + + H+I +P+ AI     +L      +       ++ I  
Sbjct: 52  LRQMNEVAEETNQLKNAFIANMTHEIRTPLNAIVGFTTMLAEMDNLDKATRMAFLKEINE 111

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVSW---- 104
           +  S +  +  +        +             L     + E+  +    +QV +    
Sbjct: 112 NKDSLLQLVNDLLDYSKIEANTLEYNDEEVDVNTLIAEVCMAENTGSHPGGIQVEFVEKL 171

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +      A+++ NL   A     +G       Q S     F +   G       +
Sbjct: 172 PQCRLVVDRVRFAQVVGNLVRNALKFTEKGSVKIGCRQLSNRNFYFYVADTGCGIDEEGR 231

Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   I    +       +       +  E            L 
Sbjct: 232 HAIFERFVKMNYNIKGTGLGLSITKSIVEHYGGGIGVESKKGEGSTFYFTLP 283


>gi|262195899|ref|YP_003267108.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262079246|gb|ACY15215.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 660

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 71/244 (29%), Gaps = 31/244 (12%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            + +   L     M  V  L   I HD  + + AI    EL  +            +++M
Sbjct: 269 RRELEEQLRHAQKMKAVGQLAGGIAHDFNNLLTAIACHAELAQQSVESGSPAAFDLEQIM 328

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEK 108
             IR ++      L F R        V     +  I  ++   I  +  +   +   G+ 
Sbjct: 329 HAIRHAAELTQQILVFSRRRVTQQKLVRVNDAVLGISTMLRPLIRANSEMITLLRAGGQV 388

Query: 109 IDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKI 153
              + E  ++++NL +    ++P                G +       +      S++ 
Sbjct: 389 RMDAGELEQVIVNLVVNGSNAMPEGGKITIETADLDIGTGDETHGVEVSAGAYVSISIED 448

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      E   +I +    +    +   +    V  +       +  +           
Sbjct: 449 TGTGM-TAEVKERIFEPFFTTKGPGEGTGLGLAIVYGVITRAGGYITVDSEPGRGTRFCI 507

Query: 212 LLEK 215
           LL +
Sbjct: 508 LLPR 511


>gi|257465491|ref|ZP_05629862.1| aerobic respiration control sensor protein [Actinobacillus minor
           202]
 gi|257451151|gb|EEV25194.1| aerobic respiration control sensor protein [Actinobacillus minor
           202]
          Length = 614

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 62/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69
           L + I H++ +P+  I     +L E  +  +  + ++  ++SA+                
Sbjct: 118 LMATISHELRTPLNGIIGLSRILLEGELAPKQREYLKTINISAVSLGHIFSDIIDLEKID 177

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERAKILLN 121
                        +  +  +     ++     +   ++            +   ++++ N
Sbjct: 178 SKRIELFNKPVEFIQLINDINHFANLMAGKKEIKFHLEYAKQLPHYINVDNARLSQVIWN 237

Query: 122 LFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS-- 178
           L   A    P  G +T+ +   S +   F +  +G      E+             D   
Sbjct: 238 LLSNAVKFTPEKGDITLKINQLSPSCFQFIVIDSGIGIAKEEQDKIFNMFYQSERSDGNK 297

Query: 179 ---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +A      L  E         +  ++
Sbjct: 298 AQGSGIGLAVSKHIAQLMGGDLTVESQLGQGSTFTLTIQ 336


>gi|229010735|ref|ZP_04167932.1| hypothetical protein bmyco0001_11900 [Bacillus mycoides DSM 2048]
 gi|228750409|gb|EEM00238.1| hypothetical protein bmyco0001_11900 [Bacillus mycoides DSM 2048]
          Length = 354

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-----SS 57
           +N   N     L+  + + I H+I +P+ A    L+LL      ++  +L          
Sbjct: 127 QNELMNAEKFHLIGEMAASISHEIRNPLTATKGFLQLLQSDTCSEKERKLYIDIAINGIE 186

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +  +   ++                 + L  L  I  +          ++ S +     
Sbjct: 187 QANHVLTDYLTFAKPSIEKEQQLQVEEELLHALSLITPLANLANVRINYIKQSTSFFIAG 246

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             ++  + LLN+F     ++P GG + +++          +K  G      +   ++   
Sbjct: 247 EKQKLNQCLLNIFKNCIEAMPTGGDLILTLVPDHKHIQLYIKDTGVGMDQGQIK-RLGSP 305

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++                 
Sbjct: 306 FYSTKEKGTGLGMMVVFSVIQAMDGKIDIISEKGTGTTFLLTFP 349


>gi|220931586|ref|YP_002508494.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219992896|gb|ACL69499.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 652

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 62/238 (26%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLI 53
            K +   L    L     + + H+  +P+  I ++L L++        +       ++ I
Sbjct: 382 KKLLEEELEYNKLRTEFFANLSHEFKTPLNVIFSALHLIEWSLDKNPLKKDKIKSYLKTI 441

Query: 54  RLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             +S   +  +  +                           +  ++  I +         
Sbjct: 442 THNSYRLLRLITNLLDITKIDANSYQLNICNCDIVKIVKSAVNSVKGHINNKTRKIVFNT 501

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                       +  +IL NL   A      G K+T+ ++D        +K  G      
Sbjct: 502 NVNEKIIACDPFDIERILYNLLSNAIKFTGEGDKITVEIKDRGQSLNIIVKDTGIGIPEE 561

Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 K  + VD +     +   +       L   +   +  E            L 
Sbjct: 562 MQDYIFKRFRQVDKSFRRNNEGSGLGLSLTKSLVELHGGSISIESKPGKGSTFIIKLP 619


>gi|157691651|ref|YP_001486113.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157680409|gb|ABV61553.1| possible sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 1126

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 13/225 (5%)

Query: 2    AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--S 57
             ++    + S  L A+  L + I H+I +P+ ++   L+L+ +     +    + +S  +
Sbjct: 901  KQSEKMLMKSEMLSAVGQLAAGIAHEIRNPLTSLKGFLQLMIQSKKYQKDYADVMMSEFN 960

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKID 110
                I  +F+ L+   +   + +     +E+VI    +      VS              
Sbjct: 961  RLESIINEFLVLSRSKSVKFEPVHVNLLLEEVIMVVESQAVLKGVSIQKKLSPSLPNIQG 1020

Query: 111  LSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVD 169
            +  E  ++ LN+      ++     V         ++ +   +  G      E   ++ +
Sbjct: 1021 IPNELKQVFLNILKNGIEAMDGVTGVIKVTSLMKDHQMMLIFEDQGKGIPEDEIG-KLGE 1079

Query: 170  GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +     I +   +   +  E        +     
Sbjct: 1080 PFYTTKEKGTGLGLMMTIKIIESHGGTIRFESKSFEGTRVIITFP 1124


>gi|153810969|ref|ZP_01963637.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174]
 gi|149832857|gb|EDM87940.1| hypothetical protein RUMOBE_01360 [Ruminococcus obeum ATCC 29174]
          Length = 469

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 71/240 (29%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +AKN+ +    +    +      S I HD  SP+ +I   +E + +      ++++ +++
Sbjct: 228 LAKNLNYMADKLNRNGEYQRQFISNISHDFRSPLTSIKGYVEAMIDGTIPVEMQEKYLKI 287

Query: 53  IRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           I   +       + +        +    +    D    +       E        +    
Sbjct: 288 ISYEAERLEKLTRGLLTLNELDIQKRMLHIQPFDINSVIKATAASFEGSCTSRNILLELI 347

Query: 105 ----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                        +  ++L NL   A    P    +T+   +   +   S+K +G     
Sbjct: 348 LSGKELMAQADMEQIQQVLYNLLSNAIKFSPDNSTITLETTEKNGKIFVSVKDHGIGIPK 407

Query: 161 ---PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               + + +    +     D     +    V  + H +   +     +         LEK
Sbjct: 408 ASLQKIWERFYKIDRSRGKDQKGTGLGLAIVKEILHAHGQHINVISTEGVGTEFIFTLEK 467


>gi|308069281|ref|YP_003870886.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858560|gb|ADM70348.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 482

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 65/213 (30%), Gaps = 19/213 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67
           S I H++ +P+ +I    E L+    +       M++I   +   I  ++ +        
Sbjct: 253 SSISHELRTPLTSIKGWSETLNSGGYDPEETKIGMKIISKETDRLIGLVEEILDFSKLEQ 312

Query: 68  RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLF 123
                  G+VD    L + +  V         ++Q+        +  +     ++ LN+ 
Sbjct: 313 NAMKLVMGTVDLRELLQEIMLNVWAKAEMKQIKLQLDSEETAYLVHGDGNRLKQVFLNIV 372

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDI 181
             A         + +S+Q        S++  G      E   ++ D   +         +
Sbjct: 373 DNAIKFSHESSIIFLSLQRIDGNIEISVQDTGIGI-SAENLARVRDRFFQVDHQNGGTGL 431

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  ++L          ++  L 
Sbjct: 432 GLAISQQFIERHHGQMLIRSELGAGTTITVSLP 464


>gi|303248204|ref|ZP_07334468.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302490468|gb|EFL50377.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 820

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 66/252 (26%), Gaps = 40/252 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLI 53
           + ++I        +     S + H++ +P+ ++    +++           + +   +  
Sbjct: 347 LVRDITVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFTDLVAPALTEATPKTW 406

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106
           R +          +      T  VD ++ +  +E    ++      +  +          
Sbjct: 407 RGAQQIRENLDIIVAEGQRLTELVDDVLDIAKMESGRCEWNMAPVSLAETAGHAVRAVAG 466

Query: 107 ------------------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
                               +       ++ +NL   A      G  V +      +E  
Sbjct: 467 LAARKGISLENKLPANLPRILGDRDRLIQVFVNLLGNAVKFTEHGAIV-VEGSVDGSEIR 525

Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202
            +++ +G+     +   +I +                 +       +   +  R+  E  
Sbjct: 526 VAVRDSGSGIAPADL-ERIFEKFKQAGDTLTEKPKGTGLGLPICRQIIERHGGRIWAESE 584

Query: 203 DDHNVVLSALLE 214
                V    L 
Sbjct: 585 PGQGSVFRFTLP 596


>gi|255535845|ref|YP_003096216.1| two-component hybrid sensor and regulator [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342041|gb|ACU08154.1| two-component hybrid sensor and regulator [Flavobacteriaceae
           bacterium 3519-10]
          Length = 371

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 56/233 (24%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           + + I F   +        S   H++ +P+ +I   ++LL+              +  ++
Sbjct: 134 LREEIEFRKEAERKKDEFISIASHELKTPMTSIKGYIQLLERSIEKNDIETTKIRLGKVQ 193

Query: 55  LSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                  + +  +            F         +    +E + +    +         
Sbjct: 194 NQIEKLNLLVADLLDISKIESGKLKFNKKHFCYDEVLSHILEVMQQSNPHITIMKIGQVE 253

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++++N    A    P   ++ +  +        +++  G       +  
Sbjct: 254 DSVYADEMRIEQVIINFITNAIKYSPGSEEIHVLTEIQDGHIYCAVRDFGIGMSPEHQNK 313

Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              I  Y    +   ++  +  +            L 
Sbjct: 314 IFDKFYRIEETSERFQGLGIGLYICQEIIGRHEGTIGVKSTPGQGSEFYFTLP 366


>gi|239906417|ref|YP_002953158.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796283|dbj|BAH75272.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 919

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/235 (8%), Positives = 48/235 (20%), Gaps = 26/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S     +   + + H+I +P+  I    ++        E+ + + L   S+ 
Sbjct: 417 ARRQAEAASQAK--SGFLANMSHEIRTPLSGIIGLTQMTLTQNPRPEIRENLELILDSSR 474

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
                                      D    L    +  +            R+     
Sbjct: 475 SLLGIVNDILDFSKIEAGKMEFVPVDFDLRDTLDRTMKSFQFSARQKGLTLGVRIDPQVP 534

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPE 162
                      +++ NL   A     +G        +          S++  G       
Sbjct: 535 AMVHGDPDRIMQVVRNLVGNALKFTDQGEVEVTLSLARPGDPMLVSCSVRDTGIGIPEDR 594

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +              +       L       +  E +       +  
Sbjct: 595 LHELFQVFSQLESTRAKRYGGTGLGLAISRRLVEMMGGAIDVESVPGQGSTFTFT 649


>gi|256829422|ref|YP_003158150.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578598|gb|ACU89734.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1131

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 53/220 (24%), Gaps = 26/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL---------- 69
           + + H+I +P+  I   ++LL+    ++E  +   ++  +     + +            
Sbjct: 760 ANMSHEIRTPLNGIMGMIQLLESGARDEEQHRTCAMALQATGRLTRLLSDILDLSRVEAG 819

Query: 70  -AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNLF 123
                    +    LG    +                  +     +  S    ++L+NL 
Sbjct: 820 KMQMRIEPFNLRDALGQSVDLFNPIAMQAGLEFRHHFDPALPEFVVGDSVRFQQVLMNLI 879

Query: 124 MVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVE 173
             A     +G          S +      +FS+  +G                       
Sbjct: 880 GNAFKFTTKGFVAVEAHPLPSHESDSVRVLFSVADSGRGIEDAALSALFQPFSQVTRGFT 939

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       L       +  E         S  L
Sbjct: 940 RDHQGAGLGLAITKRLIALMGGTMAVESEPGCGTTFSFSL 979


>gi|167588508|ref|ZP_02380896.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 1238

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 56/219 (25%), Gaps = 23/219 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70
           +   +R+ H+I +P+  +    ELL    +  +    +     S    L  +        
Sbjct: 563 SEFLARMSHEIRTPMNGVLGMTELLQRTRLTAKQRSFVDTVYRSGQTLLTIIDDILDFSK 622

Query: 71  ------FGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119
                        +    L D+  ++E   A        R Q               +IL
Sbjct: 623 IEAGKLMLERIEFNLYQLLDDVVSLLEPTAARKGLALRFRRQDPVPEWVRGDPVRLRQIL 682

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173
            NL   A     RG              +F++  +G     P+   Q+     +      
Sbjct: 683 TNLVGNAIKFTERGQVELAVAYSDHGLVVFTIADSGIGI-APDVSAQLFKPFQQADSSTA 741

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  +       LA      L  E       V +  
Sbjct: 742 RKYGGTGLGLVISRQLAEMMGGTLTVESAPGRGSVFTVT 780


>gi|313678938|ref|YP_004056677.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
 gi|313151653|gb|ADR35504.1| integral membrane sensor signal transduction histidine kinase
           [Oceanithermus profundus DSM 14977]
          Length = 482

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 61/215 (28%), Gaps = 19/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L + + HD+ +P+  +   LE L++ G      +  R  + +     +  R+        
Sbjct: 260 LVAGVSHDLRTPLAVLSGYLETLEQAGERLSAAERARYLAAARAQAARLARMTDDLFTLA 319

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------------------KIL 119
               G             + + V +                                + L
Sbjct: 320 RLESGAWPFAPEPLALAELVQDVVLELRPRFEARGVALELAPPPGPLVVQGDAGLLERAL 379

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
           +N+ + A    P GG+VT+ + +++ E   ++   G+     +    + +   +      
Sbjct: 380 VNVLVNALEHTPEGGRVTVRLAEAEGEARVAVADTGSGIAPEDLP-HLFERTFQRRDGGS 438

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +  R+  E            L 
Sbjct: 439 GLGLAIAQQALRLHGGRVEVESAPGAGSRFEIKLP 473


>gi|260770756|ref|ZP_05879685.1| nitrogen regulation protein NR(II) [Vibrio furnissii CIP 102972]
 gi|260613993|gb|EEX39183.1| nitrogen regulation protein NR(II) [Vibrio furnissii CIP 102972]
 gi|315178796|gb|ADT85710.1| nitrogen regulation protein NR(II) [Vibrio furnissii NCTC 11218]
          Length = 348

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  + +  ++    A
Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDQSLTEYTQIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     D  ++  +     ++  + 
Sbjct: 176 DRLRALVDRLLGPQKPGKKTSENLHLILEKVRQLVELEGRADLTIERDYDPSLPNILMDT 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 236 DQIEQALLNIVSNAAQILANQPHGVITLRTRTVHQANIHGQRHKLVARIEIIDNGPGIPL 295

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V        +       L  ++  ++  E         +  L 
Sbjct: 296 -ELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGR-TTFTIYLP 347


>gi|253998768|ref|YP_003050831.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. SIP3-4]
 gi|253985447|gb|ACT50304.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. SIP3-4]
          Length = 906

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 73/230 (31%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLS 56
           A++   ++ S  L   L S I HD+ +P+ ++    + L +              L   +
Sbjct: 662 ARDALISMESERLRNSLLSAISHDLRTPLTSLLGIADQLRQAPDMPSDRHAQLETLYDQA 721

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEKID 110
                + +  + +A    GSV        +E+V          ++   R++V+   E   
Sbjct: 722 FRMQQLVVNLLDMARLQAGSVQLNSQWQVLEEVLGSALRAMQPVSQQHRIEVTLPPELPL 781

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKF 164
           L  +     ++  NL   A    P    + IS Q    E   ++   G         + F
Sbjct: 782 LQFDAVLLERVFCNLLDNACKYSPPNTTIRISAQQHPGEVWVTVADEGWGLPAGMETQIF 841

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G VES      +       +   +   L  E    H       L 
Sbjct: 842 QKFTRGKVESPQPGVGLGLSICKAIIQAHGGALWAEAQQPHGTRFIFSLP 891


>gi|253690258|ref|YP_003019448.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251756836|gb|ACT14912.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 453

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 65/223 (29%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGKEDDYLAESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    +G++      +         +        S  
Sbjct: 277 CNAIIEQFLDYLRTGQEMQTEVADLNAIMGEVVASESGYERQIDSEFATGELLVRISSLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171
             +  LNL + A        KV+           F ++ +G           F   V G+
Sbjct: 337 IKRAALNLVVNAARYGNGWIKVSTGRDLQ--RVWFQVEDDGEGIAPDQLKHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T     +    V  +   +   L     +   + + A L 
Sbjct: 395 SARTTSGTGLGLAIVQRIIDAHNGVLDVGSSERGGLCVRAYLP 437


>gi|163814356|ref|ZP_02205745.1| hypothetical protein COPEUT_00507 [Coprococcus eutactus ATCC 27759]
 gi|158449991|gb|EDP26986.1| hypothetical protein COPEUT_00507 [Coprococcus eutactus ATCC 27759]
          Length = 347

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   + E    I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEELFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIDDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +   +   +  E  +         L K
Sbjct: 308 GLALVKRIVDSSGGTIKAENREYGGCRFVIELPK 341


>gi|222056478|ref|YP_002538840.1| multi-sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221565767|gb|ACM21739.1| multi-sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 767

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 63/244 (25%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           + +        M+ +  L   I HD  + + +I    EL  +   ED+         ++ 
Sbjct: 380 LLERQLSQAQRMEAIGTLAGGIAHDFNNSLASIITCTELARDDVAEDDPVRELLDVVLKS 439

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                      L F          V     + +  +++         ++     +   + 
Sbjct: 440 SYRGRNLVKQILTFSCQVEQERQPVHVERIIHECLKLLRASFPTSITIRHDICSQPGMVM 499

Query: 113 RER---AKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLKI 153
            +     +I++NL   +  ++   G                        S      S++ 
Sbjct: 500 ADPTQIHQIIMNLCTNSGHAMHDSGGFLDIRLANVDLDTAAVSGFPDLPSGRYLRLSVQD 559

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G+         +I D    +    +   +    V  +   +   ++             
Sbjct: 560 TGHGM-DQATMERIFDPFFTTKTRGEGTGLGLSVVHGIVKNHGGSIMVTSEPGKGASFHI 618

Query: 212 LLEK 215
            L +
Sbjct: 619 FLPR 622


>gi|78063729|ref|YP_373637.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77971614|gb|ABB12993.1| periplasmic sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 1032

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 65/244 (26%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +   + + D       + L + I H+I +P+  I  +LELLD   ++      ++ 
Sbjct: 504 LVQQLEEAVRAADSANAAKSSFLAA-ITHEIRTPLNVILGNLELLDRSALDASQHGRVQT 562

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              +A   L  +     ++      + +  IE  +   I                     
Sbjct: 563 LRAAASGLLGLVSDILDFSKIEAGAMTVEAIEFDVIGVIERTLGAFAPVAKAKGLSLFCE 622

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKING 155
           +  S             ++L NL   A      G  +             E   +++  G
Sbjct: 623 IDASDAQRMRGDPTRLGQVLGNLLSNAIKFTASGHVLVRVSVASAGCGDAELSIAVEDTG 682

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 ++       +              +       LA     R+    +       +
Sbjct: 683 IGIAGADRHKLFKAFSQVDASITRRYGGTGLGLALCDRLAAAMGGRIDVASVPGTGSRFT 742

Query: 211 ALLE 214
             + 
Sbjct: 743 LTVP 746


>gi|118580773|ref|YP_902023.1| signal transduction histidine kinase NtrB [Pelobacter propionicus
           DSM 2379]
 gi|118503483|gb|ABK99965.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 916

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/243 (8%), Positives = 64/243 (26%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53
           + +        ++ +  L   + HD  + +G I  + E+L         +Q         
Sbjct: 534 LREEQQAQSRKLEAIGQLAGGVAHDFNNMLGGIIGNAEMLALKLGSGHPLQKHVSTILTA 593

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              ++      L F R        +D    +G+   ++E  +     ++         + 
Sbjct: 594 SENAAGLTQRLLIFSRKGNVVIAPMDLHHAIGNALTLLEHSLDKGITIRRELNAAPSTIK 653

Query: 113 RERAKILLNLFMVAHASLPRG-------------------GKVTISVQDSKNENIFSLKI 153
            +  +++ ++  +   +                        + +    +        ++ 
Sbjct: 654 GDPVQMVNSIINLCVNAGHAMPEGGVLTISTENVELSEAYCRDSSFPIEPGCFVRIGIRD 713

Query: 154 NGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      +   +I +    +        +    V     E+   +  +       V + 
Sbjct: 714 TGEGI-PQDLLPRIFEPFFTTKGVGKGTGLGLAAVYGTIREHHGCICVQSEKGVGTVFNL 772

Query: 212 LLE 214
            L 
Sbjct: 773 CLP 775


>gi|118578927|ref|YP_900177.1| histidine kinase [Pelobacter propionicus DSM 2379]
 gi|118501637|gb|ABK98119.1| histidine kinase [Pelobacter propionicus DSM 2379]
          Length = 250

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 71/226 (31%), Gaps = 18/226 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61
           +   + +  +  L  + + I H++ +P+  I ++ ++ L E  + + V +++    + A 
Sbjct: 18  LKQLVHNEKMAELGRMSAGIVHELNAPLSVIASAAQMILRETDVPEFVREMVGRIGVEAQ 77

Query: 62  IRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------L 111
                    + L+   +   +  I L     +        +R  +               
Sbjct: 78  RLSHLARGMLSLSCRDSTLQEVDINLTIRFVLDFISYEAARRAVLVVPKLDFRLPVILLD 137

Query: 112 SRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +  +ILLNL M A  ++   G      +      E    +  NG      E   +I  
Sbjct: 138 GNKLKQILLNLVMNALQAMEDQGGVLRVETGSPLPGEVDIVINDNGPGI-PAESLEKIFQ 196

Query: 170 GNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +  +     +  +   +L  +   R+  +            L
Sbjct: 197 PGFTTKKEGEGTGLGLFVTRMLVEQLGGRIEVDSRISEGTTFRVTL 242


>gi|307316770|ref|ZP_07596212.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306897392|gb|EFN28136.1| histidine kinase [Sinorhizobium meliloti AK83]
          Length = 641

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 62/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSL----------ELLDEVGIEDE 48
           +       + +  L     + + + H+I  P+  I              + +      + 
Sbjct: 410 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTITAAENMES 469

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           + +L            +F R      G       +     +    F      +++    +
Sbjct: 470 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRIDLPPD 529

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
            +          ++L+NL   A  ++       I V+  +       ++  NG      +
Sbjct: 530 GLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGI-AAD 588

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++      S  D   +       +  +    +  E         +  L+K
Sbjct: 589 VREELFAPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESSP-SGTTFTVNLKK 640


>gi|317051553|ref|YP_004112669.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946637|gb|ADU66113.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 360

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 31/243 (12%)

Query: 1   MAKNICFNLSSMDLVALL---------CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
           + ++I   L      ALL          S + H+I +P+ AI  +  L+ E      V+ 
Sbjct: 104 LIRDISKRLDIAKNNALLFDYHYIERILSEVAHEIKNPLSAILGASRLIQESEDS-SVVP 162

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           L  + S  A+     +     +           +I +++++ +     +      E  + 
Sbjct: 163 LAGIISEEALRLENMLSSIQSFARPPQLEPAAVNIHRILKNLVQRQLPMLDEKHIEVREY 222

Query: 112 SRER-----------AKILLNLFMVAHASLPRGGKVTISV---------QDSKNENIFSL 151
                           ++ LNLF  A  +      + I                      
Sbjct: 223 YDPSIPEIYADEEKLYQVFLNLFKNAMEASTLHSSIAIITGVSLGDSPGTGYNTWIFIRF 282

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           +  G+    P+   ++      +      +     + +   +  ++  E        ++ 
Sbjct: 283 QDQGSGV-VPDAKDKLFMPFFTTKTQGSGLGLPISMKIVRAHGGKIEIESTVGIGTSVTV 341

Query: 212 LLE 214
            L 
Sbjct: 342 FLP 344


>gi|317152599|ref|YP_004120647.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942850|gb|ADU61901.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 876

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 19/251 (7%), Positives = 60/251 (23%), Gaps = 40/251 (15%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------------- 47
           ++    L+ +D + + L S I H++ +P+ +I    +L  +  +                
Sbjct: 617 ESANQRLTELDTIKSALVSSISHELRTPLTSIRGFAKLTRKEFVRHFLPLAESPLAEAKG 676

Query: 48  ----EVMQLIRLSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIA 95
               + + +I          +                    ++    +      +   +A
Sbjct: 677 ERIRQNLGIIETEGERLTRLINDFLDINRIESGKVVWNDQFLNPCEVVHQAANALAGALA 736

Query: 96  VDKRVQVSWTGEK-----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS 150
               +++  +             +  ++L+NL   A      G        +  +    +
Sbjct: 737 ARPAIKLKLSLPPTVPLIHADPDKVQQVLINLLNNACKFTAEGFIKISVTGNVDS-LTIT 795

Query: 151 LKINGNLARFPEKFTQIVDGNVES-------TIDSHDIQFYYVILLAHENKIRLLPEIID 203
           +   G      ++                        +       +       +  +   
Sbjct: 796 VSDTGMGIGPEDQPNIFEKFYKARAGDTLVAEARGTGLGLSICKEIVEHYGGSIWVDSTL 855

Query: 204 DHNVVLSALLE 214
                 S  L 
Sbjct: 856 GQGSAFSFTLP 866


>gi|255523429|ref|ZP_05390398.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296184711|ref|ZP_06853122.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
 gi|255512887|gb|EET89158.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           carboxidivorans P7]
 gi|296050493|gb|EFG89916.1| PAS domain S-box domain-containing protein [Clostridium
           carboxidivorans P7]
          Length = 798

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 70/239 (29%), Gaps = 28/239 (11%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRL 55
                +   + +     + I H++ +P+  I +S +LL+           ++++++    
Sbjct: 528 EAKLKMEKTLKMHEQFLTNISHELKTPLNVIFSSAQLLELYLKNKSVEENKEKIIKDTYF 587

Query: 56  SSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              +    +K              F +L       V  +  +        +   +     
Sbjct: 588 IRQNCYRLIKLIGNIIDLSKIESGFFKLNLSNENIVSVVEDIVQSVSEYVESKDLSIIFD 647

Query: 102 VSWTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                + I    ++  +++LNL   A      G ++ +++ D       S+K NG     
Sbjct: 648 TDVEEKIIACDPDKIERVVLNLISNAIKFSDPGDEIYVNIADKNETVEISVKDNGIGIDK 707

Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 F +    +       +   I    V  +   +  ++  E            L 
Sbjct: 708 NHLNAIFERFNQVDKSFTRNAEGSGIGLCLVKSIVELHGGKISAESKLGEGSTFKIELP 766


>gi|197335745|ref|YP_002156440.1| tmao reductase sytem sensor tors [Vibrio fischeri MJ11]
 gi|197317235|gb|ACH66682.1| tmao reductase sytem sensor tors [Vibrio fischeri MJ11]
          Length = 958

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 59/233 (25%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+++    +      L  + + H+I +P+  +  + ELL   G+  +  Q + + + S  
Sbjct: 445 ARDLAEQANRAKSAFL--ATMSHEIRTPLNGVLGTGELLRGSGLTAQQKQYVDIINRSGE 502

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105
             L  +     Y+      + +      ++  I     +                 V   
Sbjct: 503 NLLDLLNDILDYSKIEAGHLSIRKKNFSVQSMITDVHHLFSSRAQQKGITLSVNAPVDTP 562

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       ++L N    A      G              +F +   G      E  T
Sbjct: 563 EWWIGDCSRIRQVLNNFVGNAIKFTHTGSVTIQLSLILDTTLLFEVIDTGVGIAEHEIDT 622

Query: 166 QIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +       L       +  E I+         LE
Sbjct: 623 LFDVFTQAEEGMKVSGGTGLGLAISQRLIEAMDGEIGVESIEGQGSTFWFSLE 675


>gi|160890817|ref|ZP_02071820.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
 gi|156859816|gb|EDO53247.1| hypothetical protein BACUNI_03262 [Bacteroides uniformis ATCC 8492]
          Length = 1034

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     LL   +      E + +I  ++
Sbjct: 659 LIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATENETERKEFISIIETNN 718

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             +   +           + +  +         + V      
Sbjct: 719 QLLLQLVSNILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRLQTGVALQFVPEVPVC 778

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++L+NL + A       G++    +    E  F +K  G      E   +
Sbjct: 779 YVQTEHNRLSQVLINLLVNAAKFTE-KGEIMFGYKIRGEELYFYVKDTGIGISL-ENQKK 836

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           I +      + I    +       +  + K R+  E   +         + 
Sbjct: 837 IFERFTKVNTFIQGTGLGLSICKNIVTKMKGRIGVESEGEGKGSTFWFTIP 887


>gi|296270011|ref|YP_003652643.1| PAS/PAC sensor signal transduction histidine kinase [Thermobispora
           bispora DSM 43833]
 gi|296092798|gb|ADG88750.1| PAS/PAC sensor signal transduction histidine kinase [Thermobispora
           bispora DSM 43833]
          Length = 363

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 67/229 (29%), Gaps = 17/229 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L S + H++ SP+ ++      L              +++ +   
Sbjct: 129 RDASARSRAERSRADLVSTVAHELRSPLTSVKGFTATLLAKWDRFTDAQKLVMLETVNAD 188

Query: 57  SMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +             +   VD       I          + R ++   GE 
Sbjct: 189 ADRVTRLITELLDVSRIESGRLEIHRQIVDIPARARRIIAGRVAAGEPEDRYRLEVRGEL 248

Query: 109 IDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP--EKFT 165
            +   ++ KI   L  +   ++    G VTI V+  ++    S++  G        ++  
Sbjct: 249 PETWLDQDKIDQILANLVENAVRHGRGTVTIVVEPVESGVAVSVRDQGEGIAPELADRVF 308

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +  + V  L   +   +  +           +L 
Sbjct: 309 RQFWRGNKRRRGGTGLGLFIVKGLVEAHGGTIGVQRAPGGGAEFRFILP 357


>gi|291514043|emb|CBK63253.1| PAS/PAC sensor signal transduction histidine kinase [Alistipes
           shahii WAL 8301]
          Length = 555

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 65/215 (30%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF----MRLAFG 72
           S + H++ +PI +I  SL+LL +     +  E  QL+     S+   L      + +   
Sbjct: 340 STVSHEMKTPISSILMSLQLLGDDRLGTLNGEQKQLVTSIKESSDRLLSITGELLNMTQI 399

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAV--------DKRVQVSWTGEKIDLSRERAKILLNLFM 124
            TG +  +  +    ++I+  +             V+V +  +   L  +  KI   +  
Sbjct: 400 ETGKLKLIPKVTKPIELIDYAVKATQVLAERFCCFVEVDYPEKISKLFVDNEKIAWVITN 459

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--VESTIDSH 179
               A    P   ++ +     +      ++  G         +          + +   
Sbjct: 460 LLSNAIHHSPERSRIIVGAVQREKAVEIYVQDFGRGIDPRYHKSIFERYFRVPGTKVQGS 519

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +   +  E         S LL 
Sbjct: 520 GLGLAISKEFVEAHGGTISVESEIGRGSRFSILLP 554


>gi|229168155|ref|ZP_04295883.1| hypothetical protein bcere0007_31140 [Bacillus cereus AH621]
 gi|228615399|gb|EEK72496.1| hypothetical protein bcere0007_31140 [Bacillus cereus AH621]
          Length = 418

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 16/226 (7%)

Query: 4   NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
            I   +   +   + + L + I H+I +P+  +    +LL ++   +    + + +  + 
Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252

Query: 60  AIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  +      T   +                 +I  +   +    K+   + +   
Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              + +    L N+      ++  GG + I++Q  K   +  +   G      +   +I 
Sbjct: 313 NANTEKFKICLTNIIQNGIEAMKNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIK-RIA 371

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +T     +       +  E    +  E         S  + 
Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417


>gi|218661744|ref|ZP_03517674.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli IE4771]
          Length = 472

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 72/246 (29%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  + A+  L   I HD  + + AI  S +  LL     +     L+ + 
Sbjct: 69  QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLMEIK 128

Query: 57  SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106
                        L F R        ++    +GD+  +++                   
Sbjct: 129 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 188

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P GG                   S   +++  +  +
Sbjct: 189 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLVEV 248

Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +I +    +        +    V  +  ++   + PE         
Sbjct: 249 TDTGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 307

Query: 210 SALLEK 215
              L +
Sbjct: 308 RVFLPR 313


>gi|217979631|ref|YP_002363778.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2]
 gi|217505007|gb|ACK52416.1| multi-sensor hybrid histidine kinase [Methylocella silvestris BL2]
          Length = 839

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 68/236 (28%), Gaps = 31/236 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   + HD  + + AI    +LL             +  I+ +++ A   
Sbjct: 458 QSQKMQAIGQLAGGVAHDFNNVLTAIIGFSDLLLANHRPTDPSFRDIMQIKQNAIRAAGL 517

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116
           ++ +            ++ LGD+   ++  +      ++                  +  
Sbjct: 518 VRQLLAFSRRQTLRPQVLQLGDVLSELQMLMRRLVGEKIHLELRHGRDLWLIRADLNQFE 577

Query: 117 KILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++++NL + A  ++                           + +     ++  G+    P
Sbjct: 578 QVIVNLIVNARDAMPDGGEILLKTRNVAPHECDGFEEKSLPAADYVAIEVEDCGHGV-PP 636

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   +I +    +        +    V  +  +    +            + LL +
Sbjct: 637 EVRDKIFEPFFTTKEVGKGTGLGLAMVYGIVKQTGGFVFCSSPPGKGATFTVLLPR 692


>gi|53712032|ref|YP_098024.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
 gi|52214897|dbj|BAD47490.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis YCH46]
          Length = 389

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK      + +     L + + H+I +P+ AI     LL   D+   + E + LI+ ++ 
Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIIDDEKEQQEYIGLIQSNTE 213

Query: 59  SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106
             +  +  +              GS   L  L    ++     A    + ++W       
Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNA 273

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     +IL +L   A     +G       +    +  F +   G      +    
Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F + V  +  +      +      ++       +  E            + 
Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|150017029|ref|YP_001309283.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149903494|gb|ABR34327.1| multi-sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 1083

 Score =  112 bits (281), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 58/235 (24%), Gaps = 28/235 (11%)

Query: 6   CFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR- 63
                  ++  +   + + H+I +P+  I   L +L++  ++      I     S+    
Sbjct: 437 KEAAEDANMAKSQFLANMSHEIRTPLNGIVGFLSILEKTDLDSTQQDYIETIQTSSETLL 496

Query: 64  ----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEK 108
                                 + D    +     + +          +  +  +     
Sbjct: 497 VVINDILDISKIEAGRMEIEKVAFDIRSVIESTIFLYDAKAREKGLELNMLINSAIPSCL 556

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFPEKF 164
           +    +  +I+ NL   A      G        I   +++ +  F ++  G      E  
Sbjct: 557 VGDPTKIRQIISNLVSNAVKFTHNGEVFIEVSVIKETNTEVQLYFEIRDTGIGMNEEEIS 616

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            ++                   +       +       +  + + +        L
Sbjct: 617 -KLFKPFSQADSSSTRKYGGTGLGLAICKKIVEMMGGTISVKSVKNRGTTFCFDL 670


>gi|321314046|ref|YP_004206333.1| two-component sensor histidine kinase YclJ [Bacillus subtilis BSn5]
 gi|320020320|gb|ADV95306.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis
           BSn5]
          Length = 472

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           MAK +  +               + + H++ +P+  I+  +E L+        +D+   L
Sbjct: 229 MAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 288

Query: 53  IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   +   +  +K                      ++    + +  Q   +       +Q
Sbjct: 289 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQ 348

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           V              +IL+N+   +      G      ++  K      ++  G      
Sbjct: 349 VEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETI-IEIEDTGIGIPKE 407

Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +    ++         + +    V  L   ++  +  +  +         L 
Sbjct: 408 DIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLP 466


>gi|303245618|ref|ZP_07331901.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302492881|gb|EFL52746.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 487

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 69/225 (30%), Gaps = 16/225 (7%)

Query: 5   ICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60
           +   L  S  L A+  L   I H+I +P+ AI      LL    + +   +   +    +
Sbjct: 254 LERRLQKSERLAAIGELSMFISHEIRNPLFAIAGFANALLRAKDLGEASREKASIILSES 313

Query: 61  IIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDF-IAVDKRVQVSWTGEKIDLS 112
               + ++    +          VD          ++     +    V +  +       
Sbjct: 314 RRLDEILKDITNFARPTVSRPGEVDLADVARRTTALMRHALESQGITVTLDLSPNAPVAR 373

Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +     + L+N    A  ++P GG + +S        + S+  +G     P+   Q+ +
Sbjct: 374 GDPETLTQCLVNCLKNAMEAMPDGGHIMVSTGLRDGRALLSVTDDGPGI-PPDILPQVFN 432

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  +    +  E +  +   +   L 
Sbjct: 433 PFFTTRDKRAGLGLAMTKKILEDLGGSVELESVPGNGTTVVLSLP 477


>gi|283853667|ref|ZP_06370899.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570938|gb|EFC18966.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 676

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 31/234 (13%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  + +   + + H+I +P+ AI    +LL + G   +  + +     +    L  +  
Sbjct: 287 EASRMKSAFLANMSHEIRTPLNAIMGLSQLLLKTGPSPQQRECLETMRSAGEGLLVVLND 346

Query: 70  A-----------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSR 113
                             VD    L ++ +++                       +    
Sbjct: 347 VLDFSRIEVGRLEIRPVPVDLDRLLEEMRRIMAPAADERGLTLAIERDPKLPRVAVCDPV 406

Query: 114 ERAKILLNLFMVAHASLPRGG-------KVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              +ILLNL   A    P G              +D+     F ++  G      E   +
Sbjct: 407 RLKQILLNLLSNAIKFTPSGRVVLAAALPYPPKAEDAPTPVQFRVRDTGPGI-PEELRER 465

Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIR-LLPEIIDDHNVVLSALL 213
           I +  V+             +       L        L  +            L
Sbjct: 466 IFEPFVQADDAVARNHGGTGLGLSISDRLVRLLGGAGLSVDSQPGKGSTFHFTL 519


>gi|265751905|ref|ZP_06087698.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
 gi|263236697|gb|EEZ22167.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_33FAA]
          Length = 616

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 69/220 (31%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI     ++ E    +E +Q   +   + +   +    
Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETENAEERLQYYDIVEKNNMRLQELINE 310

Query: 66  -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                     +       V       D++            +    +   + +S +R ++
Sbjct: 311 ILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRCQPGVELVFEESDPSLVISTDRNRL 370

Query: 119 LLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNVEST- 175
                 +   +     K +IS      + E +F +   G+     +K  +I D  + +  
Sbjct: 371 FQVFSNLIGNATKFTAKGSISFGYKLTEKEIVFHIADTGSGI-SDDKIDKIFDRFIMANN 429

Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +   ++  +   +     +  L 
Sbjct: 430 QVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|239908806|ref|YP_002955548.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
 gi|239798673|dbj|BAH77662.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
            RS-1]
          Length = 1375

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 60/247 (24%), Gaps = 34/247 (13%)

Query: 2    AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
             K +   L++  L A   S         + H+I +P+  +   L+LL+    + E  + I
Sbjct: 978  RKKVELELNNARLKAEAASKAKSEFLANMSHEIRTPLNGVLGMLQLLESTSKDAEQDEYI 1037

Query: 54   RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
              +  S+                      +  A      +           V E  + +D
Sbjct: 1038 EAAKKSSTRLTRLLADILDLSKIEAGKMILEEADFSFVDLKESTLGLFELAVKEKGLKLD 1097

Query: 98   KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLK 152
              +        +       +IL NL   A      G     +             +F + 
Sbjct: 1098 FVIDELLPARLVGDQIRLQQILFNLVGNAIKFTETGDVRVEACHLPCSNDDIQRVLFIVS 1157

Query: 153  INGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
              G                   G+         +    V  L  +    L  +  +    
Sbjct: 1158 DTGIGIAQGMIAQVFEPFTQAEGSYTRRFQGAGLGLSIVRKLVTQMGGSLAIDSTEGTGT 1217

Query: 208  VLSALLE 214
                 L 
Sbjct: 1218 TFYLSLP 1224


>gi|229084388|ref|ZP_04216668.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
 gi|228698928|gb|EEL51633.1| hypothetical protein bcere0022_10280 [Bacillus cereus Rock3-44]
          Length = 441

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 61/233 (26%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MA ++    +         + + H++ +P+  I    E + +       + + MQLI   
Sbjct: 203 MAHSLETEDAKRK---EFLANVSHELRTPLSYIKGYSEAILDGVAKGEQQSKFMQLIHKE 259

Query: 57  SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +      +  +                       +  + +  ++      +     +   
Sbjct: 260 AGRMQRLVHDLLDLAQLEGEHFPLKKQPIVFAQLIEDVLETYELKWTEKQLRISKDLDPD 319

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF- 164
              +       ++L NL   A     + G + I ++   N     ++  G          
Sbjct: 320 IIVMIDEDRMQQVLHNLLDNAIRYTNQNGSIAIRLEKKDNSCELRIEDTGIGIDSEHLEQ 379

Query: 165 --TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    +           +    V  + + ++     E        +   L
Sbjct: 380 LGERFYRVDKARSRQHGGTGLGLAIVKQIVYIHEGEWQVESEKGKGTTVIITL 432


>gi|221308190|ref|ZP_03590037.1| hypothetical protein Bsubs1_02123 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312512|ref|ZP_03594317.1| hypothetical protein BsubsN3_02109 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
          Length = 472

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           MAK +  +               + + H++ +P+  I+  +E L+        +D+   L
Sbjct: 229 MAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 288

Query: 53  IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   +   +  +K                      ++    + +  Q   +       +Q
Sbjct: 289 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQ 348

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           V              +IL+N+   +      G      ++  K      ++  G      
Sbjct: 349 VEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETI-IEIEDTGIGIPKE 407

Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +    ++         + +    V  L   ++  +  +  +         L 
Sbjct: 408 DIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLP 466


>gi|212691341|ref|ZP_03299469.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855]
 gi|237712212|ref|ZP_04542693.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
 gi|237726358|ref|ZP_04556839.1| two-component system sensor histidine kinase [Bacteroides sp. D4]
 gi|212666094|gb|EEB26666.1| hypothetical protein BACDOR_00833 [Bacteroides dorei DSM 17855]
 gi|229434884|gb|EEO44961.1| two-component system sensor histidine kinase [Bacteroides dorei
           5_1_36/D4]
 gi|229453533|gb|EEO59254.1| two-component system sensor histidine kinase [Bacteroides sp.
           9_1_42FAA]
          Length = 616

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 69/220 (31%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI     ++ E    +E +Q   +   + +   +    
Sbjct: 251 RSNQLKSAFLANMSHEIRTPLNAILGFSRIIAETENAEERLQYYDIVEKNNMRLQELINE 310

Query: 66  -------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                     +       V       D++            +    +   + +S +R ++
Sbjct: 311 ILDLSKIESGMMEFNYAPVSLYTLCEDVKNTYSFRCQPGVELVFEESDPSLVISTDRNRL 370

Query: 119 LLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGNVEST- 175
                 +   +     K +IS      + E +F +   G+     +K  +I D  + +  
Sbjct: 371 FQVFSNLIGNATKFTAKGSISFGYKLTEKEIVFHIADTGSGI-SDDKIDKIFDRFIMANN 429

Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      ++  +   ++  +   +     +  L 
Sbjct: 430 QVQGTGLGLSISKIIVEKLGGKIAVQSKMETGTTFTFTLP 469


>gi|254445929|ref|ZP_05059405.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198260237|gb|EDY84545.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1263

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 60/241 (24%), Gaps = 31/241 (12%)

Query: 4    NICFNLSSMDLVA----LLCS----RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                 L    L A     L S     + H+I +P+ AI    ELL +  I+++       
Sbjct: 878  ERTKELEHAKLRAEESDQLKSSFLMNMSHEIRTPMNAILGFSELLKDKDIDEKDRNEFIE 937

Query: 56   SSMSAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
               S            + ++   +G V     +  I++V+ +     +    S    +  
Sbjct: 938  IIGSNGRSLLVLIDDILDISLIQSGRVKLRNEVFYIDEVLNELKDFYRLKTTSLVSVELE 997

Query: 109  ----------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                         S    ++L NL   A     +G         +     F +   G   
Sbjct: 998  DVELFKGLKLNADSVRFRQVLNNLLGNALKFTEKGSIRFGCKPRNGEAL-FHVVDTGLGI 1056

Query: 159  RFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               E+                      I       L       +  E       V    L
Sbjct: 1057 DKIEQKRVFDAFYKIENDSSKLFPGTGIGLSICRKLISGMGGDIWVESQPGEGSVFYFTL 1116

Query: 214  E 214
             
Sbjct: 1117 P 1117


>gi|254425864|ref|ZP_05039581.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196188287|gb|EDX83252.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 401

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 69/234 (29%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           + +      ++  L +   S I H+  +P+  I   ++LL             + ++ ++
Sbjct: 126 LQQKQRDLTAAKQLKSRFISAIAHEFHNPLHVISAVVQLLLRKGETFSVEKRQDSLRRVQ 185

Query: 55  LSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           ++ +     +  +                 VD       + +         +++     G
Sbjct: 186 VAVVRLTHMMNELLAFNRNASTQATFQPKVVDLKAFCQTVLEDATLVNEGIEQITFQVDG 245

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +  ++  +   +   L      A    P G  +++ +Q  + +    +  +G      ++
Sbjct: 246 DLEEVCIDTELVRTILKNLLSNAVKYSPAGSPISLRIQRHERQVTIEVTDSGRGIPKEDQ 305

Query: 164 FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T          +D      +    V      ++  +      D     + +L 
Sbjct: 306 STLFEAFFRARNVDTVKGTGLGLSIVKQCVDLHQGTIDVRSQLDQGTTFTVVLP 359


>gi|126738369|ref|ZP_01754090.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
 gi|126720866|gb|EBA17571.1| sensor histidine kinase/response regulator [Roseobacter sp.
           SK209-2-6]
          Length = 764

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 53/239 (22%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +      L  + + H+I +P+  +    ELL +  + +E          S  
Sbjct: 205 ARERAEAANRAKSAFL--ANMSHEIRTPMNGVVGMAELLSDTSLSEEQKLYANTIKNSGE 262

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----T 105
                                 +    D    + +I  +++          +        
Sbjct: 263 ALLVIINDVLDYSKIEADKMVLHEEPFDLERAIHEIVMLLQPTARDKGLTMLVDYDLFLP 322

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARF 160
              +       +++ NL   A      G          +  +        ++  G     
Sbjct: 323 TRFVGDRGRIRQVMTNLAGNAVKFTNEGHVTLRVTGISNPDEGTCSVHCLIEDTGIGIPA 382

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      + N          +   +       L       +  E  +         + 
Sbjct: 383 DKVDHVFGEFNQVEDERNRKFEGTGLGLAISKKLIELMDGEIWVESDEGEGSCFGFRIP 441


>gi|187930858|ref|YP_001901344.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
 gi|187728902|gb|ACD30065.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
          Length = 535

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + + +       +L     S   H+  +P+G I    + L            +E    IR
Sbjct: 296 LQETLDKERRMAELQRNFVSMASHEFRTPLGVIDGQAQRLMRMRDALPPETLEERCGKIR 355

Query: 55  LSSMSAIIRLKFMRLAFGY-------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
            +       +  +  +  +                   L  + ++ +       +D+ V+
Sbjct: 356 AAVQRMTHLMDHLLDSSHWLDSTTPAAMRRTDFPLAALLHEVCEMHRESTPSARIDECVE 415

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   +   NL   A    P G  V++ V+   +    +++  G      
Sbjct: 416 ADEPNTFFGDARLLFQAFSNLVGNAVKYSPPGTPVSVRVRSDADGVSVTVEDRGMGIPER 475

Query: 162 EK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F + V G   +      +  Y V L+   ++  +     +      +  L +
Sbjct: 476 DIERLFERYVRGGNVAGTVGAGVGLYLVKLVVELHRGTITVTSEEGKGSTFNVFLPR 532


>gi|17231988|ref|NP_488536.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
 gi|1546076|gb|AAC32398.1| HepK [Nostoc sp. PCC 7120]
 gi|17133632|dbj|BAB76195.1| two-component system sensory histidine kinase [Nostoc sp. PCC 7120]
          Length = 575

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/247 (8%), Positives = 64/247 (25%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53
           + +      ++    ++  + + H++ +P+ A+    +LL +   +          ++ I
Sbjct: 325 LEQAKELAEAASKAKSIFLANVSHELRTPLNAVIGLSQLLKDDAADLNLSGEFTSDLETI 384

Query: 54  RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101
             +    +  +                Y    D +  + ++   ++  I  +  +     
Sbjct: 385 NSAGRHLLELINDILDLSKIEAGKMTLYPEIFDVVTLINNVVVTVKPTIEKNNNLLEIYC 444

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--------NIFSLKI 153
               G          ++LLNL   A      G       ++ ++           F++  
Sbjct: 445 DEHLGTMYADQTRMRQVLLNLLSNAAKFTTNGRIKLTVRREKEDFLPEMPFGAISFTVSD 504

Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G      +   Q+                   +               ++ +       
Sbjct: 505 TGIGMSPSQ-QQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEIIVKSQLGLGS 563

Query: 208 VLSALLE 214
             +  L 
Sbjct: 564 TFTVYLP 570


>gi|16077444|ref|NP_388258.1| two-component sensor histidine kinase YclJ [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221317449|ref|ZP_03598743.1| hypothetical protein BsubsJ_02128 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221321711|ref|ZP_03603005.1| hypothetical protein BsubsS_02139 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|23396953|sp|P94414|YCLK_BACSU RecName: Full=Sensor histidine kinase yclK
 gi|1805446|dbj|BAA09008.1| yclK [Bacillus subtilis]
 gi|2632677|emb|CAB12184.1| two-component sensor histidine kinase [YclJ] [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 473

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           MAK +  +               + + H++ +P+  I+  +E L+        +D+   L
Sbjct: 230 MAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 289

Query: 53  IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   +   +  +K                      ++    + +  Q   +       +Q
Sbjct: 290 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQ 349

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           V              +IL+N+   +      G      ++  K      ++  G      
Sbjct: 350 VEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETI-IEIEDTGIGIPKE 408

Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +    ++         + +    V  L   ++  +  +  +         L 
Sbjct: 409 DIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLP 467


>gi|134299384|ref|YP_001112880.1| nitrogen-specific signal transduction histidine kinase NtrB
           [Desulfotomaculum reducens MI-1]
 gi|134052084|gb|ABO50055.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 653

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 73/221 (33%), Gaps = 13/221 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +   L  +++V  + + I H+I +P+ ++   L+LL       +      L     
Sbjct: 431 MERELA-RLDRLNIVGQMAAGIGHEIRNPMTSVRGFLQLLKNKDECVKYTDYFNLMIEEL 489

Query: 61  II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         +            D L  L  + Q   +   V+ ++Q     + + 
Sbjct: 490 DRANSIITEYLSLARRQGANLKMQNMNDILDALHPLIQSDANNCNVNLKIQKETVPDILL 549

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +E  +++LNL      ++P GG + +  Q    + + S++  G          ++   
Sbjct: 550 NEKELRQLILNLVRNGLDAMPEGGTLILKTQKKGKKVVLSVQDQGKGI-AHSIMDKLGTP 608

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            V +  +   +       +A  +K  ++             
Sbjct: 609 FVTTKDNGVGLGLATCYSIASRHKANIIVSSSS-RGTNFMV 648


>gi|295107993|emb|CBL21946.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 468

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 75/240 (31%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +AKN+ +    ++          S I HD  SP+ +I   +E + +      ++++ +++
Sbjct: 227 LAKNLNYMADKLNRSGEYQRQFISNISHDFRSPLTSIKGYIEAMIDGTIPVEMQEKYLKI 286

Query: 53  IRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVS 103
           I   +       + +        +         D    +       E      +  +++ 
Sbjct: 287 ISYETERLEKLTRGLLTLNELDIQKRMLNIQPFDINGVIKATAASFEGSCTSRNILLELI 346

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +G ++    +  +I   L+     A    P    +TI   +   +   S+K +G     
Sbjct: 347 LSGRELLAQADMEQIQQVLYNLLSNAIKFSPDNSTITIETTEKNGKIFVSVKDHGIGIPK 406

Query: 161 ---PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               + + +    +     D     +    V  +   +   +     +         LEK
Sbjct: 407 ASIHKIWERFYKIDRSRGKDQKGTGLGLAIVKEIIKAHGQHINVISTEGIGTEFIFTLEK 466


>gi|291528761|emb|CBK94347.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 499

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + KN    +++     +L S I HD+ +PI A+    E + +        ++  V  +  
Sbjct: 251 LKKNAEEKVTNESENRVLISNIAHDLKTPITAVKGYAEGILDGVANTPEKVDKYVRTIYN 310

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKRVQV 102
            ++    +  +    +   T  +                       +    I +     V
Sbjct: 311 KANDMDKLINELTLYSKIDTNRIPYNFAKINVTDYFNDCVEEIGLDLEAKNIRLSYENHV 370

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I    +  +++ N+   +   + +    + I + D  +     ++ NG      
Sbjct: 371 DSNVLIIADPEQLRRVINNIVGNSVKYMNKTQSYIDIRINDVGDFIQVEIEDNGRGINQR 430

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  ++  ++     +     +  ++ K
Sbjct: 431 DMPYIFDRFYRADASRNSATGGSGIGLSIVKKIIEDHGGKIWATSKEGDGTTMFFVIRK 489


>gi|265765367|ref|ZP_06093642.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263254751|gb|EEZ26185.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 389

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK      + +     L + + H+I +P+ AI     LL   D+   + E + LI+ ++ 
Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIIDDEKEQQEYIGLIQSNTE 213

Query: 59  SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106
             +  +  +              GS   L  L    ++     A    + ++W       
Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETDNLVLAWDREQSNA 273

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     +IL +L   A     +G       +    +  F +   G      +    
Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F + V  +  +      +      ++       +  E            + 
Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|229008408|ref|ZP_04165870.1| hypothetical protein bmyco0002_52090 [Bacillus mycoides Rock1-4]
 gi|228752866|gb|EEM02433.1| hypothetical protein bmyco0002_52090 [Bacillus mycoides Rock1-4]
          Length = 368

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 84/222 (37%), Gaps = 11/222 (4%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           ++    +  M++V+ L + I H++ +P+  +    +LL    +  E  +          +
Sbjct: 139 RSKLVKMEKMEIVSQLAASISHEVRNPLTVVKGFTQLLKTPDLPQESREQYIEHILGELN 198

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLS 112
            + +I   ++  A   +  VD+++   +++++I   + +     ++ +           +
Sbjct: 199 RAQVIIDDYLTFAKPASQKVDNIVIDQELKRIISMMMPLCNMNSINVSENLVTGSITGNT 258

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +   +  LNL   +  ++P GGK++I     +N+    +K +G      E+  +  +   
Sbjct: 259 QHFQQCFLNLIKYSIEAMPNGGKLSIKSSACENKITIVIKDSGIGM-TQEQINRFGEPYF 317

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +     + +       L    I +    L+    
Sbjct: 318 STKTRGTGLGTMVAVKIIETMNGTLDINSIVNKGTTLTITFP 359


>gi|256829214|ref|YP_003157942.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578390|gb|ACU89526.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 676

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           K++       ++     +   + + H+I +P+  I   ++LLD       +++ ++L   
Sbjct: 286 KSLIRATKQAEIANIAKSEFLANMSHEIRTPLNGIMGMIQLLDGTPVGADQNKYIELALT 345

Query: 56  SSMSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           S                    +  +  +      + + I      + +   + +   +  
Sbjct: 346 SCNRLTRLLSDILDLSRIEAGMMEIHESKFRFADLRNSILGLFAVESLTKAVTLKCIIDP 405

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNL 157
           +   E I       +IL NL          G             ++    +F++   G  
Sbjct: 406 TIHPEVIGDEGRVLQILFNLVGNGLKFTKEGSVTVEITPLGSEKNNDYRVLFTVSDTGIG 465

Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                             +         +    V  L H     +  + +      ++ +
Sbjct: 466 IHEDHLKNLFKPFVQIEKSYTRKYQGAGLGLSIVKKLVHLMGGSIEVDSVVGEGTSMNVV 525

Query: 213 LE 214
           L 
Sbjct: 526 LP 527


>gi|258405093|ref|YP_003197835.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257797320|gb|ACV68257.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 801

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 70/231 (30%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K +   +  +  L A+  L + + H+I +P+G I   +ELL     +D+ +  ++    
Sbjct: 569 EKQMLQQVQRAEKLSAVGKLAAGLAHEINNPLGVILCYVELLRTTVQDDQALSDVQTIEK 628

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWT-----GE 107
            A    K ++    +     S  G   I +V      +       + + +          
Sbjct: 629 HAKQAQKVVQDLLNFARRKPSPKGACHINEVVESIVDVFSVQTAAREITLETDLGEGVPT 688

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFT 165
                    +I+ NL M A  ++       +     +  +     +  NG      +   
Sbjct: 689 VNGTCSILEQIISNLLMNAMDAVDPAEGRIVIQTRQEAPDTVRVRITDNGPGI-SKDDME 747

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +        +    V  L  E   R+  E         +    
Sbjct: 748 KIFDPFYTTKSVGAGTGLGLAVVYGLVEELGGRIDVESK--AGASFTIRFP 796


>gi|254453815|ref|ZP_05067252.1| sensor histidine kinase/response regulator [Octadecabacter
           antarcticus 238]
 gi|198268221|gb|EDY92491.1| sensor histidine kinase/response regulator [Octadecabacter
           antarcticus 238]
          Length = 778

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 65/243 (26%), Gaps = 32/243 (13%)

Query: 3   KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
           KN+    + S  + A+  L   + HD  + + AI    +LL    D+   +   +  I  
Sbjct: 394 KNLEMQFVQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDGDYADLVQIHQ 453

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKIDL 111
           ++  A   +  +            +I L +       ++   +     + +        +
Sbjct: 454 NANRAAALVGQLLAYSRKQNLQPEVIDLRNTLSDSTHLLNRLVGERVTLTLDHDPRVSPI 513

Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153
             ++ ++   L      A  ++P GG                               +  
Sbjct: 514 RADKRQLEQVLMNLVVNARDAMPEGGNIRIETGNTVLVEGLSRDRVTVPPGRYVELRVHD 573

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      ++  +  +    +    +   +       +  +    +            S 
Sbjct: 574 TGTGIPEDKRVKRF-EPFWTTKKTGEGTGLGLSTAYGIIKQTGGYIFVVSTTGVGTTFSI 632

Query: 212 LLE 214
           L+ 
Sbjct: 633 LIP 635


>gi|126650115|ref|ZP_01722348.1| two-component sensor histidine kinase [Bacillus sp. B14905]
 gi|126593287|gb|EAZ87249.1| two-component sensor histidine kinase [Bacillus sp. B14905]
          Length = 591

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 29/238 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIR 54
           M +          L +   + + H++ +PI  +    E L +          +E+ ++I 
Sbjct: 357 MTEQHRL----EKLRSDFIANVSHELRTPIAMLQGYSEALMDDDFIQDLEERNEITKIIY 412

Query: 55  LSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------- 101
             S      +  +                +  I         +      ++         
Sbjct: 413 DESKRMGRLVTDLLDLARMESGHMTLYKDELPINSTFERITQKFAQVAKEKHIRLLFDSE 472

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +             ++L NL   A      G  VT+ V+        S++  G+     
Sbjct: 473 FNDDAMINIDEDRIEQVLTNLVDNALRHTEEGS-VTVKVEQEPTFAKISVQDTGHGIPQD 531

Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +    +     +     +       +   +   ++ + +       +  L 
Sbjct: 532 DLPYVFERFYKADKARTRSKGGTGLGLAIARNIIKAHSGNIMVDSVLKEGTTFTFYLP 589


>gi|299146661|ref|ZP_07039729.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517152|gb|EFI41033.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 785

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 54/221 (24%), Gaps = 18/221 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI    +LL      +E      + + ++ I L+    
Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPSAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    +  + +                           
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKEGVTLVFDNEEEDLLMEGDQNRI 539

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173
            +++ N    A       G++         +    +K  G      EK   I +  V   
Sbjct: 540 MQVITNFLTNASKFT-YEGEIRFGFGRMDKDIRVYVKDTGIGI-ESEKVDHIFERFVKLN 597

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +      ++  +    +               + 
Sbjct: 598 SFAQGTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP 638


>gi|206890234|ref|YP_002248566.1| sensory box sensor histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742172|gb|ACI21229.1| sensory box sensor histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 729

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 70/224 (31%), Gaps = 22/224 (9%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAI 61
             L +L  L + + H+I +P+  I    ++L         E  I   + +    +     
Sbjct: 503 EKLASLGTLAAGVAHEINNPLAIILGFTDILLEKTSPESQEYDILKTIEKQATNAKRIVE 562

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSRERAK 117
             L F+R        V+    +  +  V+ + I+++     +            + E  +
Sbjct: 563 NLLSFVRHKEHKEQIVNINECIETVLDVMNNTISLNNIELKKQLQQDLPYVKGDAGELQQ 622

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI- 176
           +  N+   A   +  GG +T+S +   +     +   G      E   +I D    +   
Sbjct: 623 VFFNIINNAIYVMKGGGVLTVSTKYDGHWLEVCISDTGCGI-SKEHRQRIFDPFFTTKEV 681

Query: 177 -DSHDIQFYYVILLAHENKIRLLPEII-----DDHNVVLSALLE 214
                +  +    +  ++   +  E       ++        L 
Sbjct: 682 GKGTGLGLWVSYNIIKKHNGIITFETRTKEEAEETGTKFIIRLP 725


>gi|206562088|ref|YP_002232851.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038128|emb|CAR54076.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1010

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 59/237 (24%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
             +    L S +   +   + I H+I +P+ A+  +LELLD+          +   + +A
Sbjct: 512 RADAQRALDSANRAKSTFLATISHEIRTPLNAMLGNLELLDKAPDPSRQKPRLHAVTSAA 571

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEK 108
            + L  +      T      + L      I++ +                 +++      
Sbjct: 572 RMLLDMLNNVLDMTKIEADRMTLEATGFRIDELMRDVADLFEPVAGARGIALRIDVDPAV 631

Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPE 162
                       +I +NL   A     RG                   +  +G      +
Sbjct: 632 THTYLGDPMRVRQIAVNLVSNAIKFTDRGAVALSVSASGGGATPVTIRVSDSGIGMTADQ 691

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                  I       LA     R+  + +          L 
Sbjct: 692 LAHVFEPFAQADESIARRFGGTGIGLALSYKLAESMGGRIEADSVPGVGSTFVVTLP 748


>gi|166030476|ref|ZP_02233305.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC
           27755]
 gi|166029728|gb|EDR48485.1| hypothetical protein DORFOR_00137 [Dorea formicigenerans ATCC
           27755]
          Length = 470

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + HD  SP+ +I   +E + +      ++ + + +I   +       K +     +
Sbjct: 249 FVANVSHDFRSPLTSIKGYVEAIADGTIPPEMQGKYLNIILFETERLTDLTKDLLTLNEF 308

Query: 74  TGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKID-----LSRERAKILLN 121
                 L  +      +        +     K++ +     +         R+  ++L N
Sbjct: 309 DTKNLLLDKVPFDLHEMIKNVAASFEGRCTQKKISIELVFARKHLKVVADKRKIQQVLYN 368

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177
           L   A     +   +TI   +  ++   S+K  G           + +    ++    D 
Sbjct: 369 LLDNAIKFSDQDSIITIETTERGDKIYTSVKDYGIGIPRNALNKIWERFYKSDLSRGKDK 428

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V      +   +     +         L K
Sbjct: 429 KGTGLGLAIVKEAIQAHGENINVVSTEGVGTEFIFSLPK 467


>gi|170726077|ref|YP_001760103.1| histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169811424|gb|ACA86008.1| histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 608

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +++     + +  L  +  L + I H+I  P+ AI +  +    L      + V   I  
Sbjct: 358 LSETQDELIQAAKLTVIGSLSASINHEINQPLAAIKSYAQNTLTLLSRNKTEHVKDNIHT 417

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      +     +T                   +  I+  I+      K +  + 
Sbjct: 418 IISLTNRLATIVSQFKSFTRKSQGDDSATNIELCIQDAMTIIQPEIDKQGVELKLITSTE 477

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163
             E         ++L+NL   A  ++ R   K      +        ++ +G   +  + 
Sbjct: 478 HYEIWGDDIRLQQVLVNLMSNAILAMERSKVKRITIRIEKGEMLCIKIQDSGPGVQDSQM 537

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S      +       +    +  +      D   +    L 
Sbjct: 538 EKIFEPYYTTSDRQGLGLGLSISRRIIESMQGSIEVSNAVDGGAIFEICLP 588


>gi|156740811|ref|YP_001430940.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
 gi|156232139|gb|ABU56922.1| multi-sensor signal transduction histidine kinase [Roseiflexus
            castenholzii DSM 13941]
          Length = 2161

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 60/236 (25%), Gaps = 26/236 (11%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--SSMSAI 61
            +I   + +        S + H++ +P+ +I   ++LL          + +       S  
Sbjct: 1911 DITREVEADRAKREFISNVSHELRTPLTSIKGYVDLLMLNPKWKLNEEQLSYLSVVKSNT 1970

Query: 62   IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             RL  +       G +D        + +    I  +    +                  T
Sbjct: 1971 HRLMNLINDILEIGRIDDNKVGLTFKHISIGAIFEEVNKTLRAEIERKRLSFSIEVADHT 2030

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKF 164
               +       +++LNL   A       G V +    +        +  NG     PE+ 
Sbjct: 2031 PPVMADETRLTQVVLNLASNAVKYTYPEGSVKLRAGLNPAGLLQVDVIDNGVGI-SPEQQ 2089

Query: 165  TQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +                   +           +  ++  E         S ++ 
Sbjct: 2090 QHLFRRFYRADNPLRDEAGGTGLGLSIAKSYVEMHGGQMWVESEPGKGSTFSFIIP 2145


>gi|49183301|ref|YP_026553.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49177228|gb|AAT52604.1| sensor histidine kinase, putative [Bacillus anthracis str. Sterne]
          Length = 340

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 98  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 157

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L D    I       + +   
Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 217

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 218 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 277

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E I          + K
Sbjct: 278 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 334


>gi|329115712|ref|ZP_08244429.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus parauberis NCFD 2020]
 gi|326906117|gb|EGE53031.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus parauberis NCFD 2020]
          Length = 445

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 65/223 (29%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             L     S   H++ +P+ +I    E +     DE  ++ E + +I   S+     ++ 
Sbjct: 214 EKLNMDFISNASHELRTPVTSIKGFAETIKSMPQDEEVLKKEFLDIIYNESLRLEHIVEH 273

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIE---------DFIAVDKRVQVSWTGEKIDLSRERAK 117
           M        +      +   E +               +  +  +             ++
Sbjct: 274 MLTLSKVKKTQLQKTDIDLNEFLQYIGNSLKHQLQQKHLHLKYDLEANVIIESDKYLLSQ 333

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           I+LNL   A      GG + +  +++K+     +K  G      E   +I +        
Sbjct: 334 IILNLLSNAIRYTEDGGDIMVITRETKDNITICVKDTGIGISQLEI-ERIFERFYRVNKG 392

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  L+     ++          + +  L 
Sbjct: 393 RSRQSGGTGLGLSIVKELSQILSGKISVSSQLGQGSIFTLTLP 435


>gi|302038538|ref|YP_003798860.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300606602|emb|CBK42935.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 651

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 60/232 (25%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSS 57
           M   +     +  L  L  + + I H+I +P+  I ++  LL D+    D     + +  
Sbjct: 401 MQSRLR---RAERLATLGQVAAGIAHEIRNPLVGIGSTTSLLLDDTDPTDARRPDLAVIL 457

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------SWTG 106
                  + +     Y    + +    D+ Q++++ + V                     
Sbjct: 458 QETKRLDRIVNQIIDYARPREIVAFAFDMAQLVQEVMKVLDEPLTRKQATIRLSAPDAPY 517

Query: 107 EKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +  ++LLN+   A  + P        +    +  +     ++   G       
Sbjct: 518 TIQADRDQLKQVLLNVLQNAIEASPSGGTTTVTLVQQARGVEPGLEVTVADRGTGISPTH 577

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       +   +   +  +        +     
Sbjct: 578 LPHVFEPFFTSGKPQGTGLGLAICRNILEAHGGEIALDSEVGRGTTVRVWAP 629


>gi|283851683|ref|ZP_06368962.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573013|gb|EFC20994.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 838

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/252 (8%), Positives = 62/252 (24%), Gaps = 40/252 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLI 53
           + ++I        +     S + H++ +P+ ++    +++           + +   +  
Sbjct: 361 LVRDITVEKEVDRMKTEFISTVSHELRTPLTSVLGFAKIIRRKFADLVAPALAEADPRTW 420

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109
           R +          +      T  VD ++ +  +E    ++      +             
Sbjct: 421 RGAQQIRENLDIIVAEGERLTELVDDVLDIAKMESGRCEWNMAALSLAEVADHAVKAATP 480

Query: 110 ---------------------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
                                       ++ LNL   A       G+V +       E +
Sbjct: 481 LAARKGLVLANQVPPTLPLVLGDRDRLVQVFLNLIGNAVKFTA-TGRVDVEAALDGPEIL 539

Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202
            +++  G      +   +I +                 +       +   +  R+  E  
Sbjct: 540 VTVRDTGPGIAAGDL-ERIFEKFKQAGDTLTEKPKGTGLGLPICRQIVERHGGRIWAESE 598

Query: 203 DDHNVVLSALLE 214
                     L 
Sbjct: 599 GGAGSAFRFTLP 610


>gi|239831952|ref|ZP_04680281.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239824219|gb|EEQ95787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 858

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 469 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 528

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 529 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWSVKAD 588

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 589 LGQFEQVAVNLAVNARDAMPEGGEITLRTRNVPMQEAAKLHYRDLPEADYVVFEVEDTGT 648

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 649 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLP 707

Query: 215 K 215
           +
Sbjct: 708 R 708


>gi|298491734|ref|YP_003721911.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298233652|gb|ADI64788.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1002

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 58/217 (26%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL---------- 69
           + + H++ +P+  I    +LL    ++ +       S          +            
Sbjct: 631 AILSHELRTPLNPILGWSQLLKTGKLDKDKTDEALKSIERNAKLQVDLIDDLLDVSRILR 690

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLF 123
                        D +    +   +      +  +  +     K+        +I+ NL 
Sbjct: 691 GKLTLNVTTVNLADIISAALETMSLAASVKQIAVQTLIEPNIGKVRGDPARLQQIVWNLL 750

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178
             A    P+GG+V + ++   +     +   G               +  DG+       
Sbjct: 751 SNAIKFTPQGGEVVVQLEQIGSMAHIIVSDQGKGINRKFLPHIFEHFRQEDGSTTRKFGG 810

Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
             +    V  L   +   +  +   +     L  +L 
Sbjct: 811 LGLGLAIVRHLVELHGGTVEADSPGEGQGTTLKVILP 847


>gi|194017044|ref|ZP_03055657.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
 gi|194011650|gb|EDW21219.1| sensor protein ResE [Bacillus pumilus ATCC 7061]
          Length = 593

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +        + E+ Q+I  
Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIVDDIAGSEEEKKEIAQIIYD 410

Query: 56  SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103
            S+     +  +   A    G +   +   D E++ E        +              
Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHITLNLESTDTEELTEKIYRKFLGIAKEKQVDLTYDIQV 470

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                +    +  ++  NL   A    P GG+V  SVQ  ++     +K +G+     + 
Sbjct: 471 DEPYFVLDPDKIEQVFTNLIDNAIRHTPEGGEVHFSVQSVESGLKMDVKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +    +           +    V  +   ++  +            +  + +
Sbjct: 531 PFIFERFYKADKARTRGRSGTGLGLAIVKNIVEAHQGSIHAHSKAGTGTHFTFYIPR 587


>gi|218437687|ref|YP_002376016.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218170415|gb|ACK69148.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 419

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 60/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLE--LLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             +   H++ +P+ AI N+ +  LL+  +   +   ++ I   + S  I +  +      
Sbjct: 200 FTADASHELRNPLAAIRNNAQFGLLEPIDPHQQQTSLENIDQIAQSMGILVSNLLFLARN 259

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKILLN 121
            G +D         +     I  +   Q                           + + N
Sbjct: 260 EGKLDPKALSLVDLESWLQPIIEEYTHQAEAKGLSLTYQLPQTRVMLKINPDLMRQAIAN 319

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176
           L   A    P GG V+++V       I  ++ +G     PE    F +            
Sbjct: 320 LLSNACRYTPSGGTVSLNVDVQTGWVILEVRDSGIGIPEPELSRIFERFYRVDPVRSRQT 379

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +      +        L 
Sbjct: 380 GGFGLGLAIAQQIVQAHGGEITATSRLEQGSTFQIKLP 417


>gi|182436429|ref|YP_001824148.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178464945|dbj|BAG19465.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 509

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 63/230 (27%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55
           + K +    +  +      + + H++ +P+ AI    E+L++     + M      L+  
Sbjct: 260 LEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLEDEADTLDPMIAPAVHLVVS 319

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +      ++ +     +             +       +          +         
Sbjct: 320 ETRRLNDLVENLMEVTRFDAGTARLVLDTVDVADQVTACIDARAWLDAVNLDAERGMMVR 379

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
              R    IL NL   A         V + V+    E +  ++ +G        P  F +
Sbjct: 380 LDPRRLDVILANLIGNALKHGG--SPVDVRVRTEGEELVIEVRDHGPGIPEDVLPHVFDR 437

Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +   +     +  AH +   +      D   V    L +
Sbjct: 438 FYKASASRPRSEGSGLGLSIALENAHIHGGDITAANSPDGGAVFELRLPR 487


>gi|172041314|ref|YP_001801028.1| two-component system sensor kinase [Corynebacterium urealyticum DSM
           7109]
 gi|171852618|emb|CAQ05594.1| two-component system sensor kinase [Corynebacterium urealyticum DSM
           7109]
          Length = 529

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 55/210 (26%), Gaps = 18/210 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM--SAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+ ++    EL      +D  M + R+S       + ++ +             
Sbjct: 306 SHELRTPLTSVRGYAELYRSGATDDADMVIGRISDEAERMGLLVEDLLALVRMDEGRPLQ 365

Query: 81  IGLGDIEQVI----------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
               D+ ++                +            +  +    +++ NL   A    
Sbjct: 366 NQRVDVLELTLRAADGARASFPGRNIGVENHYGSIPVVMGDANRLHQVISNLLTNALKHA 425

Query: 131 PRGGKVTISV-QDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTIDSHDIQFY 184
                V IS+ + S       ++ +G        P  F +    +           +   
Sbjct: 426 GEDANVKISLLKTSPELVTIDVQDDGEGIPADALPHLFERFYRPDGSRSRASGGSGLGLS 485

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V  L   +   +  +            L 
Sbjct: 486 IVQSLVKAHGGAITVDSTVGEGTTFRVQLP 515


>gi|197121582|ref|YP_002133533.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
 gi|196171431|gb|ACG72404.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. K]
          Length = 601

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 59/211 (27%), Gaps = 15/211 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----------FMR 68
           + + HD+ +P+ AI+ S  LL   G    + +       SA    +              
Sbjct: 390 AIVSHDLKNPLEAIYLSSALLLRSGAAPRLRRHAETIQRSAARMDRLIRELLDLSSIEAG 449

Query: 69  LAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFM 124
                         + +    +    +     +     G +  +  +R    ++L NL  
Sbjct: 450 RLVVEPRPEPLDAVVEEALAGLSPLALERGIALGADTGGAREPVPCDRERILQVLSNLVG 509

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A    PRGG VT+    +  E    ++ +G      +            +     +   
Sbjct: 510 NALQFTPRGGHVTVRATLAPAEARVEVRDDGPGIAPAQLRRVFDRYWKSGSRRGSGLGLS 569

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               L   +  R+  E            L +
Sbjct: 570 IAKGLVEAHGGRIEVESRLGAGSTFRFTLPR 600


>gi|121535018|ref|ZP_01666836.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121306431|gb|EAX47355.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 369

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 60/236 (25%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           M++ +     +  L   L + I H++ +P+  I  +LE + E            + +   
Sbjct: 135 MSRALA---ENNRLRKRLLADIAHELKTPLSVIQGNLEGMLEGVVETSPEQLHSLYEETV 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGE 107
             +       +      G       L  +         + + + D   +     +    E
Sbjct: 192 YLNKIINELRELSLAEAGQLTLERQLTDVNPLVSRAVNMLKPLADEKKIKLACSLQHVPE 251

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEK 163
                    ++L NL   A    P  GK+                 S++ NG      + 
Sbjct: 252 ISIDVMRINQVLYNLLSNAVRYTPANGKIEAVTAVVNLDSREYVAISIRDNGKGISADDL 311

Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 I    V  L   +  ++  +         +  L 
Sbjct: 312 PHIFEHFYRADFARDRKSGGSGIGLAIVKQLVELHGGKVEAKSELGKGSEFTVYLP 367


>gi|150388490|ref|YP_001318539.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149948352|gb|ABR46880.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 496

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +++       +   +L S I HD+ +PI +I   +E + +      E M     +   
Sbjct: 243 LKESLESQQQYEENRKILISNISHDLKTPITSIKGYIEGIKDGVADTPEKMDKYIGTIYK 302

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------------- 105
               +  +         +D      D +         D   ++++               
Sbjct: 303 KAEDMDHLIENLFLLSKLDLQKLPFDFKVFDIVGYLKDIGEELNFDLKKKQIQLSLKLPE 362

Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF-- 160
                        +++ N+         R         ++ K + +  ++ NG       
Sbjct: 363 ENIMINADGNNLRRVITNVVDNCIKYADRTPIEIHLTLKNRKEDVLVEIQDNGRGISKEA 422

Query: 161 -PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F      +     +     +       +  E+   +  E   +    +   L K
Sbjct: 423 LPHIFDDFYRADPSRNANTVGSGLGLAIFKKIIEEHDGTVWIESEVNQGTRVYFTLPK 480


>gi|299146842|ref|ZP_07039910.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298517333|gb|EFI41214.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 660

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + K       S  L +   + + H+I +P+ AI    +LL   ++   ++E +Q+I  ++
Sbjct: 280 LEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 339

Query: 58  MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +  +  +                 +  +V        + + + +       V    T
Sbjct: 340 ELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYET 399

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL N    A       G + +  +         ++  G      +K  
Sbjct: 400 CTVRLDKNRLAQILTNFVTNAIKYTS-KGMIEMGYEKIDGNIRLYVRDTGIGI-PEDKKD 457

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++       +       +       +    +  +  E   D   +  A+L 
Sbjct: 458 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508


>gi|240171668|ref|ZP_04750327.1| PhoR [Mycobacterium kansasii ATCC 12478]
          Length = 477

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   ++  I   +    + +  + +           
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVAMLLSRIESEASRMGLLVDDLLMLARLDVQRPLE 317

Query: 81  IGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLFMVAHAS 129
               D+  +  D +   + +               T E +       ++L NL   A   
Sbjct: 318 HHQVDLLALASDAVHDAQAIDPERTITLEFLEGPGTPEVLGDDARLRQVLSNLVANALQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    +T+ V    ++ +  +   G      +    F +    +           +   
Sbjct: 378 TPASADITVRVGTEGDDAVLEVADRGPGMSQEDASRVFERFYRTDSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVDSLVRAHGGAVSLATAPGEGCCFRVTLPR 468


>gi|228951934|ref|ZP_04114032.1| hypothetical protein bthur0006_13480 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807857|gb|EEM54378.1| hypothetical protein bthur0006_13480 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 423

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESISPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFIRITFTDNGIGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|229069110|ref|ZP_04202402.1| hypothetical protein bcere0025_13170 [Bacillus cereus F65185]
 gi|228714055|gb|EEL65938.1| hypothetical protein bcere0025_13170 [Bacillus cereus F65185]
          Length = 423

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESISPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFIRITFTDNGIGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|229078741|ref|ZP_04211295.1| hypothetical protein bcere0023_14040 [Bacillus cereus Rock4-2]
 gi|228704614|gb|EEL57046.1| hypothetical protein bcere0023_14040 [Bacillus cereus Rock4-2]
          Length = 429

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 192 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 251

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 252 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 311

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 312 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFIRITFTDNGIGI-PPAIQEYIF 370

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 371 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 415


>gi|206967933|ref|ZP_03228889.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|229189638|ref|ZP_04316653.1| hypothetical protein bcere0002_13160 [Bacillus cereus ATCC 10876]
 gi|206736853|gb|EDZ54000.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|228593902|gb|EEK51706.1| hypothetical protein bcere0002_13160 [Bacillus cereus ATCC 10876]
          Length = 423

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLASEVSLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLNNFIRITFTDNGIGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFTISIP 409


>gi|160894764|ref|ZP_02075539.1| hypothetical protein CLOL250_02315 [Clostridium sp. L2-50]
 gi|156863698|gb|EDO57129.1| hypothetical protein CLOL250_02315 [Clostridium sp. L2-50]
          Length = 460

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +  +     + + H++ +P+ AI    EL++     D  ++          
Sbjct: 225 REQHNDIMENAQMRQEFTANVSHELKTPLTAISGYSELIENGMAADGDVRRFATEIHRNS 284

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------------TGE 107
            RL  +         +D       +E++    +A      +                   
Sbjct: 285 NRLLTLINDIIRLSELDVTENAPSMERIDLCAVARSNVDMLMLSAEKHNVTLKFSGQPSY 344

Query: 108 KIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPE--- 162
            +       +++ NL   A          +VT+   +  +  +  +K  G          
Sbjct: 345 IMGNKMMMEELVYNLTDNAIRYNKPDGTVEVTVYSYEKDHSVVMKVKDTGIGIPEEHLGL 404

Query: 163 KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +     +     +    V  +  ++  +L      +    ++   +
Sbjct: 405 VFQRFYRVDKSRSKSTGGTGLGLAIVKHIVAQHDAKLDITSEPNVGTEITITFQ 458


>gi|27383256|ref|NP_774785.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27356430|dbj|BAC53410.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 579

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 67/247 (27%), Gaps = 36/247 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + ++++     + + H++ +P+ ++ +++E L           ++++I    
Sbjct: 334 MTNALYSRIEAIEM---FAADVAHELKNPLTSLRSAVETLPLARNENSRARLLEVIEHDV 390

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQ 101
                 +  +                 VD    LG +  V  +          A  +   
Sbjct: 391 KRLDRLISDISDASRLDAELQRQDAIPVDLRRLLGTLVSVANETKLGHDVAVEARFEGRG 450

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            + T           +++ NL   A +    G KV ++ +  + E    +  +G   R  
Sbjct: 451 PTDTFAVTGHDSRLGQVVSNLLSNAQSFSEAGSKVRLTCRRVRGEIEIVVDDDGPGIRDD 510

Query: 162 EKFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNV 207
                      +           +       +   +  R+  E                 
Sbjct: 511 ALERIFERFYTDRPHQGFGQNSGLGLSISKQIVDAHGGRIWAENRPGPADEDGAPTVAGA 570

Query: 208 VLSALLE 214
                L 
Sbjct: 571 RFVVRLP 577


>gi|332655315|ref|ZP_08421055.1| PAS/PAC sensor signal transduction histidine kinase
           [Ruminococcaceae bacterium D16]
 gi|332515820|gb|EGJ45430.1| PAS/PAC sensor signal transduction histidine kinase
           [Ruminococcaceae bacterium D16]
          Length = 475

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 19/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSAIIRL 64
            S    +   S + H++ +P+ AI    E      L +     + M +I   +      +
Sbjct: 249 QSEKTQSEFISSVSHELRTPLTAITGWAETIQSGELRDPKDVRKGMDIIVSEARRLTNMV 308

Query: 65  KFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDL 111
           + +      +          +D    L D      +F   +      +            
Sbjct: 309 EELLEFSRMSDGRFTLSVEPLDLKAELEDAVYTYREFFRREGIELTYQDCPEEAVPISGD 368

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-QIVDG 170
                ++  NL   A      G ++ +S+   +   +  ++  G      E    +    
Sbjct: 369 PERLRQVFCNLLDNAGKHGGSGKRIDVSIAQEEEFAVIRIRDYGPGIPEEELPHVKYKFY 428

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              S      I       +   ++  L     +    +++  L 
Sbjct: 429 KGSSKARGSGIGLAVCEEIVTRHEGTLDIGNAEGGGCLVTLRLP 472


>gi|301052938|ref|YP_003791149.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375107|gb|ADK04011.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 466

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    ++K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKLK 458


>gi|262394817|ref|YP_003286671.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio sp. Ex25]
 gi|262338411|gb|ACY52206.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Vibrio sp. Ex25]
          Length = 601

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L  L  + + I H++ +P+ AI +  E   L  +    + V   +  
Sbjct: 357 LRLTQDELVQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYERVEDNLTR 416

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103
            S          +    +                +   +    +  +             
Sbjct: 417 ISALTDRMANISQQLRSFAKKTSGNELAQSRLFPVIASVKELMKPALKSARVTLETQVPE 476

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E      +  ++L+NL   A  +L       +       +        +  NG    
Sbjct: 477 HDVEVQINIIQLEQVLVNLLTNAIEALKEQQDKQVQLSIEQDEHAGLVWIHVDDNGPGLG 536

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + +  +   +       +      RL  +  +      S  L 
Sbjct: 537 DFSLSD-LCEPFLTTKQNGLGLGLSISQQILASMNGRLCAQNREQGGARFSLCLP 590


>gi|302550248|ref|ZP_07302590.1| phosphate regulon sensor kinase PhoR [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467866|gb|EFL30959.1| phosphate regulon sensor kinase PhoR [Streptomyces
           viridochromogenes DSM 40736]
          Length = 386

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 52/240 (21%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 139 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 198

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G              R  +      
Sbjct: 199 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIHAYVAAGQPADRFLLRVQQPL 258

Query: 109 IDLSRERA---KILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKIN 154
            DL  +     ++L NL   A                       + Q  K     ++   
Sbjct: 259 PDLWADPDKIDQVLSNLLENAVRHGEGTVTIDVTATASPRDGEHAEQGEKAATSVTVSDE 318

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G                  S      +  Y V  +   +   +               L 
Sbjct: 319 GPGIPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTIEVGRAPGAGAEFRFTLP 378


>gi|254504175|ref|ZP_05116326.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
 gi|222440246|gb|EEE46925.1| hypothetical protein SADFL11_4214 [Labrenzia alexandrii DFL-11]
          Length = 827

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 66/249 (26%), Gaps = 37/249 (14%)

Query: 1   MAKNICFNLSSMDLVA----------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
           M K       + +L            +  + + H+I +P+  +   ++LL    ++DE M
Sbjct: 147 MEKAEANRKRAEELREKAESATKAKDMFLAAMSHEIRTPMNGVVGMIDLLTHTDLDDEQM 206

Query: 51  QLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIE----DFIAVDKRVQV 102
           Q+      SA          +  +    G +D  +    I  V+E              +
Sbjct: 207 QMAATVRDSAFALLTIINDILDFSKIEAGKMDLEMIPMSILDVVEGVGETMGPNACAKVL 266

Query: 103 SWTGEKIDLSR--------ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFS 150
            +                    +IL NL   A      G        +     +    + 
Sbjct: 267 DFIAYCDPRIPAEVAGDQVRLRQILFNLLGNAVKFTEAGQVTLRVDMNEISEGQATVRYQ 326

Query: 151 LKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++ +G     PE+   +                   +    V  L       +  E +  
Sbjct: 327 VQDHGIGM-TPEQTANLFQPFQQADVSTTRRFGGTGLGLTIVRRLVDMMGGTIDVESVPG 385

Query: 205 HNVVLSALL 213
                +  L
Sbjct: 386 DGSTFTVTL 394


>gi|163802223|ref|ZP_02196118.1| nitrogen regulation protein [Vibrio sp. AND4]
 gi|159174028|gb|EDP58838.1| nitrogen regulation protein [Vibrio sp. AND4]
          Length = 348

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+++  +  + +   +    A
Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTHIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     ++  + 
Sbjct: 176 DRLRVLVDRLLGPQKPGKKTQENLHQVLEKVRQLVELESQHSVVIERDYDPSLPEILMDA 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  Q  +      +  NG     
Sbjct: 236 DQIEQAMLNIVSNAAHILSQQAHGQITIRTRTVHQANIHGQRCRLAARIEITDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  ++  ++  +    H    +  L 
Sbjct: 295 PELRDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVDSWPGH-TTFTIYLP 347


>gi|153005298|ref|YP_001379623.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152028871|gb|ABS26639.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 382

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 10/219 (4%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSA 60
               +  +     L   I HD+ +P+G I  SL +L     E     + +  I      A
Sbjct: 164 QQARVERLSTFGQLVGSIGHDLRNPLGVIETSLYILRTRTGEDERARKHLDRIGEQLGVA 223

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRER 115
              +  +             + L  +     + +     V ++               + 
Sbjct: 224 NGIITNLLDMIRDRPLAREPVELAAVVGGAAESVRRPTGVSLALEGLDALPPVEGDPGQL 283

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ +NL   A  +    G V +    +       ++ +G     P    ++ +  + + 
Sbjct: 284 RQVFVNLLENAVFAASPEGVVAVRASRADGLVALDVEDSGPGV-DPATRRRLFEPLITTK 342

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +            +  L 
Sbjct: 343 DKGIGLGLALVKRIAERHGGTVEYSDRPGGGARFTVRLP 381


>gi|325914780|ref|ZP_08177118.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
 gi|325539057|gb|EGD10715.1| PAS domain S-box [Xanthomonas vesicatoria ATCC 35937]
          Length = 1364

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKVKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVVTLEK 872


>gi|295091655|emb|CBK77762.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 360

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 58/219 (26%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR----LSSMSAIIRL----- 64
           +     + + H+I +PI AI N  +LL++  +  E  +        S+      +     
Sbjct: 131 MRTDFIANVSHEIKTPIAAIQNYAQLLEKPDLTKEEQENYTAAILSSTHRLSALITNILR 190

Query: 65  ------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                 + +   +        L       + I +   +D    +               +
Sbjct: 191 LNKLESQQITPKYEAYDLCRQLCDCALGFETIWEEKEIDFEADLEDRAVIYADESLMELV 250

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVEST 175
             NL   A      GG V +      +     +   G           F +   G+    
Sbjct: 251 WNNLLSNAFKFTEPGGSVLLRQTSDSDCVTVEVSDTGCGISKETKKHIFEKFYQGDTSHA 310

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + + +     + +       +  E  +      +  + 
Sbjct: 311 TEGNGLGLALALRVLQMMGAAIEVESEEGKGTSFTVQIP 349


>gi|56752231|ref|YP_172932.1| two-component sensor histidine kinase [Synechococcus elongatus PCC
           6301]
 gi|81300681|ref|YP_400889.1| histidine kinase [Synechococcus elongatus PCC 7942]
 gi|56687190|dbj|BAD80412.1| two-component sensor histidine kinase [Synechococcus elongatus PCC
           6301]
 gi|81169562|gb|ABB57902.1| histidine kinase [Synechococcus elongatus PCC 7942]
          Length = 482

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 67/237 (28%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEVGI----EDEVMQ 51
           +AK     L+ +    +        + H++ +P+  I   L+ LL         +++ ++
Sbjct: 240 LAKAFNDMLNRLSISWEQQQQFVGNVSHELKTPLTVISGYLQSLLRRGDNLNSYQNQALE 299

Query: 52  LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +   I  L+ +                       + ++ ++          +Q  
Sbjct: 300 TASAEAERTIRMLQDLLDLARVDSGNLHFRLMPTVLNTLIAEVAEMTRRVTGRQIIMQTP 359

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
                         + L+NL   A     +   V I+++ S  + +  +   G       
Sbjct: 360 KSEIVVYADQNRLEQALINLLDNAAKYSNQDQVVYINLEQSNQQTLIHIIDQGVGIPLAH 419

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +  + D   +       L    + ++            + +L 
Sbjct: 420 QSRIFERFYRVDEAMTRSRDGTGLGLAIAKSLIEGMQGKITLRSKLGEGSTFTIILP 476


>gi|99082586|ref|YP_614740.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99038866|gb|ABF65478.1| multi-sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 1096

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 63/237 (26%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRL 55
            KN      +  +     +   H++ +P+  I   LE L+   +      +   ++LI  
Sbjct: 426 EKNAKLE-EADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDMLPAQASQLRLITF 484

Query: 56  SSMSAIIRLKFMRLAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           S+      +  +   +             VD+   L ++ Q+++    VD          
Sbjct: 485 SARRLSRLVDDLLDIYRIREGRMRLDLQPVDASHALRNVLQLLQPTFQVDPAKFHVDLPG 544

Query: 108 KID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +           +IL NL   A            + +        +++ +G      + 
Sbjct: 545 DLPALTADPVRFEQILFNLLSNAVKYGGGSEVYITAEERPSGHVALAIRDHGPGI-AADS 603

Query: 164 FTQIVDG------NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I         +         +       LA      +              +L 
Sbjct: 604 MERIFHPLEQLMPDGSGQATGTGLGLTIARHLADLMAGSIEVSSTPGEGSEFRVVLP 660


>gi|302038879|ref|YP_003799201.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
 gi|300606943|emb|CBK43276.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
          Length = 786

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 64/240 (26%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           ++       M+ V  L   + HD  + +  I     +L +   ++   +           
Sbjct: 402 EDQLRQAQKMEAVGRLAGGVAHDFNNVMTVILGYSAVLLQELSQNSSARYFVQEIQRAGE 461

Query: 60  -----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R    +  S+D    + D+  +++  I     + +      + +  +
Sbjct: 462 RCAALTGQLLAFSRKQMLHPVSLDLHRVIRDLMALLKSLIGEHISIVLQLDPLPLWVKAD 521

Query: 115 RAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
             ++   L      A  ++P                        + ++      +   G 
Sbjct: 522 AVQLEQVLLNLAVNARDAMPHGGTLTIDTRQVSREEVWGTDHDSRTARTYVRLRVHDTGT 581

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +        +    V  + H++   +  E        +S  L 
Sbjct: 582 GIDPA-TKAKIFEPFFTTKPPGRGTGLGLSTVYGIVHQSGGTITVESAVGQGTTMSVFLP 640


>gi|270295813|ref|ZP_06202013.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273217|gb|EFA19079.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 978

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     LL   +      E + +I  ++
Sbjct: 603 LIRAREKAQESDRLKSAFLANMSHEIRTPLNAIVGFSSLLTATENETERKEFISIIETNN 662

Query: 58  MSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             +   +           + +  +         + V      
Sbjct: 663 QLLLQLVSDILDLSKIEANTLEFNYQNVDLNQLAKDVENTVRGRLQTGVALQFVPEVPVC 722

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    +++L+NL + A       G++    +    E  F +K  G      E   +
Sbjct: 723 YVQTEHNRLSQVLINLLVNAAKFTE-KGEIMFGYKIRGEELYFYVKDTGIGISL-ENQKK 780

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           I +      + I    +       +  + K R+  E   +         + 
Sbjct: 781 IFERFTKVNTFIQGTGLGLSICKNIVTKMKGRIGVESEGEGKGSTFWFTIP 831


>gi|260770504|ref|ZP_05879437.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
 gi|260615842|gb|EEX41028.1| periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii CIP
           102972]
          Length = 807

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 60/236 (25%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           K+      + ++  +   S I H+I +P+ +I     LL    + D+    +     S  
Sbjct: 459 KDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTSNLSDDQRNHLITIDKSGK 518

Query: 62  IR----LKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKI 109
                    + ++    G VD      D         +           ++ +       
Sbjct: 519 HLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDLDKSLP 578

Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
                     +I+LN    A     +G           +E       S++ NG      +
Sbjct: 579 PLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIGLSTDD 638

Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +          D +         +       +AH     +  E            L
Sbjct: 639 QMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVESRLGDGSTFWLTL 694


>gi|162449443|ref|YP_001611810.1| histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161160025|emb|CAN91330.1| histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 549

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----------GIEDE 48
            + +   L  +  + +L  L + + H+I +P+  +  +++   +                
Sbjct: 283 RRQMETRLQLADRMASLGTLAAGVAHEINNPLAYMVANVDFARKELRAKGAGARLDALLS 342

Query: 49  VMQLIRLSSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +                   F R   G  G VD    +  + ++ +  I    R+ +  
Sbjct: 343 ALDEAAEGGSRVRHIVGGLKTFSRADDGELGPVDVDPVIQLVLRMAQQQIQSKARLVLEL 402

Query: 105 TGEKIDLSRERA--KILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNL 157
                  + E    +++LNL + A  +LP            +           +   G  
Sbjct: 403 RPVPAVRANEAQLGQVILNLLVNAAQALPEGKVSENEIRISTAPAPPGRVCIEVCDTGPG 462

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P+  ++I D    +    +   +       +    +  +  E           LL 
Sbjct: 463 I-APDLQSRIFDPFFTTKPIGEGTGLGLAICHGIVTSFRGEIGVESEVGKGACFRVLLP 520


>gi|160915023|ref|ZP_02077236.1| hypothetical protein EUBDOL_01030 [Eubacterium dolichum DSM 3991]
 gi|158432822|gb|EDP11111.1| hypothetical protein EUBDOL_01030 [Eubacterium dolichum DSM 3991]
          Length = 405

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 63/236 (26%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR--LSSM 58
           + +++   L    +     +   H++ +PI  I   +E+L+    +D  M+         
Sbjct: 171 LFQDVSKTLEGEKMQKRFIADASHELKTPIAVIKGMVEILNRDDFDDPQMEKEFLTQIES 230

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------------VQVSW 104
                   ++     +    S + L      + + I    +                  +
Sbjct: 231 EINRLDGLVKDLLILSRLSLSNVLLTKEFNDMNEIINKAIQSFKKQINEKGLKLVCDYQY 290

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  + + +++++NL   A     +G     + +++       +   G      E  
Sbjct: 291 QSPIRCDAMKMSQVIINLLSNAIKYSDQGTIRIQTYRENNFFVCT-VADEGQGI-AKENL 348

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I             +     +    V      +   +  +   +        + 
Sbjct: 349 DKIFHRFYRVDDARTRSKGGSGLGLSIVKSTVEAHGGNVEVDSELNKGTKFIVRIP 404


>gi|90419109|ref|ZP_01227020.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337189|gb|EAS50894.1| signal transduction histidine kinase [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 653

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53
           +   +     S    +   + + H++ +P+ AI    ++LD       E   + E + LI
Sbjct: 377 LQTALDAANQSSAAKSQFLAAVSHELRTPLNAIIGFSDILDQEFFGGFESDRQKEYVGLI 436

Query: 54  RLSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------- 102
           R S           L   ++  G    V    GLG+   +  D +  + R +        
Sbjct: 437 RQSGQHLLSVVNSLLDVSKIEAGRYELVPEAFGLGEAMDLAVDVVREEARRKDLRLDVRP 496

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                E     R   +ILLNL   A       G VT+  +       FS+   G      
Sbjct: 497 GCRDEEITADRRACHQILLNLLSNALKFTEV-GVVTLESRRVGAMVEFSVSDTGIGIAES 555

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++                   +    V  LA  +   +          +++  L 
Sbjct: 556 DI-ERLGRPFVQVSSGTTRRYQGTGLGLSLVKGLAELHGGDMTIRSQPGVGTMVTVRLP 613


>gi|46447515|ref|YP_008880.1| putative two-component sensor histidine kinase phoR [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46401156|emb|CAF24605.1| putative two-component sensor histidine kinase phoR [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 589

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/222 (9%), Positives = 59/222 (26%), Gaps = 19/222 (8%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSSMSAIIRLKFM 67
           ++     +   H++ +PI  I    E L +     + +Q         +       +K +
Sbjct: 360 EMRRDFIANASHELKTPITIIRGFAEALYDNPGLPQDIQNEITTKIVRNCKRMTALIKDL 419

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI--------- 118
                      S + L D+  +     ++   +           S +   I         
Sbjct: 420 LTLADIENIPSSRLSLCDLFDLTTRCQSMLHEIFPDAEVNIETSSDDIKLIVDEDLFELA 479

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VE 173
           ++NL   A     R   + + + D  +  +  +   G      ++               
Sbjct: 480 IMNLIENAAKYSSRPAHIFVKLNDLSDHIVIEVSDQGIGIPLADQEHIFDRFYTVDKAHS 539

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    +    V  +  ++   +  +         +  L K
Sbjct: 540 QKMGGSGLGLSIVKTIIEKHFGTITLKSELGKGSTFTITLPK 581


>gi|298207043|ref|YP_003715222.1| sensory box sensor histidine kinase/response regulator
           [Croceibacter atlanticus HTCC2559]
 gi|83849677|gb|EAP87545.1| sensory box sensor histidine kinase/response regulator
           [Croceibacter atlanticus HTCC2559]
          Length = 509

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 58/218 (26%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
           + I H+I +P+ AI    ELL +  +  E + L+ + + ++      +            
Sbjct: 139 ANISHEIRTPLTAIVGFSELLKKTNLNFEQLGLLDVITNASEQLTATINDMLDIAKIELG 198

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLF 123
                       + ++ +  + +       ++  V+         I       ++L NL 
Sbjct: 199 ELKISNEEINLKEVILDIAKVYKEKAKSKGINFSVEYDEEILSNTIGDKLRIQQVLGNLL 258

Query: 124 MVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176
             A      G           + +K    F ++  G           F      N     
Sbjct: 259 ENAIKFTNVGNVSLVVKKSFQRANKIGVDFYVEDTGQGIPEDHLRSVFESFHQVNASEKQ 318

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       L    + ++  E            L 
Sbjct: 319 KGTGLGLAITKTLVEALEGKIQVESELGKGSQFRVYLP 356


>gi|323498994|ref|ZP_08103976.1| sensor protein TorS [Vibrio sinaloensis DSM 21326]
 gi|323315930|gb|EGA68959.1| sensor protein TorS [Vibrio sinaloensis DSM 21326]
          Length = 959

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+ +    S      L  + + H+I +P+  +  +  LL + G+  +    + + + S  
Sbjct: 459 ARQLAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLQDEGLNKQQAYYVDVINRSGS 516

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIE-----DFIAVDKRVQVSWT 105
             L  +                     D    + D+EQ++        + +   V+    
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRPVDFDLRAMVEDVEQLLHGRATEKHLQLSCLVESELG 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK 163
                     +++L NL   A      G       +D +     +F +  +G      E+
Sbjct: 577 RYWRGDMTRISQVLNNLVGNAIKFTDHGHVDIYVAEDPEQPGRVLFEVSDSGIGISPSEQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S          +       +       L  E            + 
Sbjct: 637 QNLFDAFTQASGGLSSKGGTGLGLAISKKIVEAMGGELSLESSAGQGSRFWFSIP 691


>gi|317485574|ref|ZP_07944451.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923254|gb|EFV44463.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 1176

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 69/248 (27%), Gaps = 36/248 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSSM 58
           +AK      ++    +   + I H+I +P+  I    EL  L E       ++ I  SS 
Sbjct: 392 LAKEAADAATTAK--SQFLANISHEIRTPLHGIMAFAELALLKEKTPPHRYLRAILQSSR 449

Query: 59  SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + +  +             + L        D +  +  +         ++  V +    +
Sbjct: 450 ALLEIINDLLDVSKIEAGHLELEQAPFMLDDVVHHVCTVALHNAHAGGIELVVDMDPNMQ 509

Query: 108 K--IDLSRERAKILLNLFMVAHASLPRGGKVT--------------ISVQDSKNENIFSL 151
              I  +    +I++NL   A      GG++                  +  + + I  +
Sbjct: 510 IALIGDAGRLQQIIMNLVTNAVKFTGPGGQICVTLKQGHAEPLPSDTCPEQRRVQIICFV 569

Query: 152 KINGNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +  G               + VD +         +       L       +  E   +  
Sbjct: 570 RDTGVGIAPEFLGQLFQPFRQVDASTTRRHGGTGLGLCICRQLVEMMHGEIWVESEPNVG 629

Query: 207 VVLSALLE 214
              +  + 
Sbjct: 630 STFAFSIP 637


>gi|303242336|ref|ZP_07328821.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
 gi|302590099|gb|EFL59862.1| multi-sensor hybrid histidine kinase [Acetivibrio cellulolyticus
           CD2]
          Length = 917

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +       +    ++  + + H+I +P+  I    +L+           +    +I  
Sbjct: 421 MLQAKKIAEEANKTKSIFLANMSHEIRTPLNGIIGMSDLMLRVKMTPEEQRETTKTIISC 480

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103
           S     +    +  +      V+    + D++++I + I + K                 
Sbjct: 481 SQNLLHLLNNILDFSKIEAEKVEISSNVFDLKEIIGESINMYKIRAKEKSLDISAGFQDG 540

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLAR 159
                I    +  +IL NL   A      G    +  + +      E  F++   G    
Sbjct: 541 LENLWIGDKVKIQQILNNLINNAIKFTIEGRINVLVNKLNDDGSCCELQFTVSDTGIGIE 600

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +     V     DG+         +       L      R+  E         +  L+
Sbjct: 601 DKDLNKLFVAFSQVDGSYTRQFGGTGLGLSISKKLVELMGGRIWVESTMGVGSRFNFTLK 660


>gi|260574258|ref|ZP_05842263.1| histidine kinase [Rhodobacter sp. SW2]
 gi|259023724|gb|EEW27015.1| histidine kinase [Rhodobacter sp. SW2]
          Length = 854

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 57/245 (23%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           A+     L +  + A           + + H+I +P+  +    ELL +  + +E     
Sbjct: 318 AREQQTLLETARMAAEAANRAKSAFLANMSHEIRTPMNGVVGMAELLCDTNLTEEQRLFA 377

Query: 54  RLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQV-IEDFIAVDKRVQ 101
                S    L  +                +    D    + ++  +      A    + 
Sbjct: 378 DTIRSSGEALLVIINDILDYSKIEAERLTLHPEPFDLERTIHEVTMLLQPRARAKGLDLM 437

Query: 102 VSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKI 153
           + +                ++L NL   A      G  +   V         +   +++ 
Sbjct: 438 IDFDMFLPTRYIGDAGRLRQVLTNLMGNAVKFTETGHVLVRVVGIEAEPGSQQLHITVED 497

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G             + N          +   +       L       +  +        
Sbjct: 498 TGIGIAPEHLDHIFGEFNQVESETNRKFEGTGLGLAITQRLVERMGGAVWVDSEPGKGSC 557

Query: 209 LSALL 213
               L
Sbjct: 558 FGFRL 562


>gi|219850947|ref|YP_002465379.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219545206|gb|ACL15656.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 917

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + +     L +  + +L  L   I HD  + +  I   LEL    L +       +    
Sbjct: 671 LRQMEEELLRNQKIESLGVLAGGIAHDFNNILTIIVGHLELAGMDLADDDPVTLQLNKAT 730

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109
            +   A      +         V ++  L D+ +    F     + +  +          
Sbjct: 731 RALFRARGLTTQLLTFAQGGAPVRTVSYLSDMIEETATFALRGSKSRALFRLSASLPAVD 790

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----------DSKNENIFSLKINGNLA 158
               + ++++ NL M A  ++P GG V I+ +            S      S++  G   
Sbjct: 791 VDLDQISQVVSNLVMNADQAMPAGGTVIITGEVVTQAKGTLSLPSGEYVAISVEDTGIGI 850

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +I D    +      +     + +   +   +    +       +  L 
Sbjct: 851 -PSDLMGKIFDPYYSTHSVGRGLGLSSSLSIIRNHGGGIEVHSVIGEGSTFTFYLP 905


>gi|196231613|ref|ZP_03130471.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224466|gb|EDY18978.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 605

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59
           ++       ++ +  L S I HD+ + +  I  S  +L    +     +++ +I  S+  
Sbjct: 218 ESQFLRAQRLEGIGTLASGIAHDLNNILSPILMSCGILRKEFDDEDTLKMLSIIEGSAER 277

Query: 60  AIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +K +             +     + ++ +V+      +  +Q ++  +   +  + 
Sbjct: 278 GAGIVKQVLTFARGVEGERVLLQLKHLVSELAKVMAQTFPRNIDIQTNFPPDLWTVMGDA 337

Query: 116 ---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157
               ++LLNL + A  ++P+                              +      G+ 
Sbjct: 338 TQLHQVLLNLCVNARDAMPQGGGIRLSAENVNIDQHFASMNPGAQLGPYVVLRASDTGSG 397

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P+   +I D    +        +    VI +   +   L  +         S  L 
Sbjct: 398 M-SPQTMEKIFDPFFTTKEVGKGTGLGLATVIGIVKSHGGFLTVQSELGVGTTFSVFLP 455


>gi|158337655|ref|YP_001518830.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158307896|gb|ABW29513.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 801

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 25/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + K    N    +L +   +   H+  +P+  I +S ELL+       +   ++ +    
Sbjct: 564 LNKERELN----ELKSRFVAMTSHEFRTPLATILSSAELLEHYGHKWDDTRKLKHLNQIQ 619

Query: 58  MSAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            S       +               +      L                   +      +
Sbjct: 620 QSVEHMTGLLNDVLLLGKAESGNLAFKPIPMQLTEFCKGLAEELQITTKTHEIVCRLQDQ 679

Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +   +   +          A    P+GG V   +    N  IF+++ +G      E  
Sbjct: 680 PAETRMDEKLLRHIFTNLLSNAIKYSPQGGTVDFDLVFEDNYAIFNVQDHGLGIPQSE-C 738

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +          I    +    V      +   +     +      +  L 
Sbjct: 739 DRVFNSFNRASNVGNISGTGLGLAIVKRSVDLHGGEISLTSQEKVGTTFTVQLP 792


>gi|114778017|ref|ZP_01452917.1| sensory box histidine kinase/response regulator [Mariprofundus
           ferrooxydans PV-1]
 gi|114551623|gb|EAU54176.1| sensory box histidine kinase/response regulator [Mariprofundus
           ferrooxydans PV-1]
          Length = 903

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 70/243 (28%), Gaps = 32/243 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           +N   ++  ++ + +L   I HD  + + AI  + EL     ++   +Q           
Sbjct: 518 ENKMTHVQRLESLGILAGGIAHDFNNILAAIMGNAELAQFNALDGLPVQQELKNIIGGSA 577

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            ++      L +          V+    +    Q+I+  I+ +  +++  +     +  +
Sbjct: 578 RAADLCKQMLAYSGQGMFVKSEVNITTLVEKELQLIDISISKNISLKLELSNVLPSVCAD 637

Query: 115 RAKILLNLFMVAHASLPRG-----------------------GKVTISVQDSKNENIFSL 151
           + ++   +  +   +                                ++++     +  +
Sbjct: 638 KTQMQQIIMNLVTNAAESIGEEKQGDITIMTTVIEADSKALACPYIDAIREPGEYVLLEV 697

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             NG          +I D    +      +    V+ +   +   +  +           
Sbjct: 698 TDNGCGM-DKATMGKIFDPFFTTKFTGRGLGMSAVLGIVRAHGGTIQIDSKPGSGTCFKI 756

Query: 212 LLE 214
           LL 
Sbjct: 757 LLP 759


>gi|84496374|ref|ZP_00995228.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649]
 gi|84383142|gb|EAP99023.1| Sensory transduction histidine kinase [Janibacter sp. HTCC2649]
          Length = 678

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSS-MDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQ 51
            +     +     L AL          + H++ +P+ +I   LE+L +  +       ++
Sbjct: 431 EERQAQQVEHVARLEALDRQKDEFVGTVSHELRTPLTSIAGYLEMLADGDLGELSPAQLK 490

Query: 52  LIRLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQ-VIEDFIAVDKR 99
            + +   +       +                    VD    + D+ Q +       +  
Sbjct: 491 AMAVIERNTFRLRGLIEDVLVLNRIETRGLDPSFVPVDLAQLVRDVVQDLQPQARDNEVT 550

Query: 100 VQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           + VS   +   +  +  ++   L      A      GG V +SV    +      + +G 
Sbjct: 551 LDVSDLPQTCVVEGDALQLGRALTNVVGNAVKFSKSGGLVVVSVVVELDAVRIRCRDSGI 610

Query: 157 LARFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +           S      I    +    V  +   +   L    ++     +S 
Sbjct: 611 GIPAADMEQMFSRFFRASNATSGAIPGTGLGLAIVKAIIEAHHGELELHSVEGEGTTVSL 670

Query: 212 LLE 214
            L 
Sbjct: 671 TLP 673


>gi|314933668|ref|ZP_07841033.1| sensor protein SrrB [Staphylococcus caprae C87]
 gi|313653818|gb|EFS17575.1| sensor protein SrrB [Staphylococcus caprae C87]
          Length = 588

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 52/217 (23%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          + + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLGVVLDESKRLNRLVNELLNVARMD 423

Query: 74  -----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                                       +D     +    +             ++L NL
Sbjct: 424 AEGLSVEKEVQPIKNLLDKMKAKYRMQADDLGLTMEFNSGNDHLLWDYDMDRMDQVLTNL 483

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID-- 177
              A      G  + ++    +  NI  +   G         + F +    +        
Sbjct: 484 IDNASRYTQPGDTIAVTASKDEQYNILYISDTGTGIAPEHLQQVFDRFYKVDASRKRGKQ 543

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   ++  E+  ++  +            L 
Sbjct: 544 GTGLGLFICKMIIEEHGGQIDVKSELGKGTTFIIKLP 580


>gi|301309055|ref|ZP_07215000.1| two-component sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300833081|gb|EFK63706.1| two-component sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 571

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 72/233 (30%), Gaps = 24/233 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE   L   
Sbjct: 337 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLKLLEDARVGAMNDEQKALAES 394

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
              S+   L+     +++    TG +     +    ++IE  I  +          ++V 
Sbjct: 395 IKESSNRLLEITSELLKMTQVETGKLQLNPKITKPIELIEYAIKANQVQADRFNCHIEVE 454

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +   L  +  KI   L      A    P  G++ I  +   +     ++  G     
Sbjct: 455 YPEKISKLFVDSEKIAWVLTNLLSNAIHYTPENGRIIIGARQQDHSVEIYVQDFGKGIDP 514

Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +          + +    +           +   L  +           
Sbjct: 515 RYHQSIFDRYFRVPGTKVQGSGLGLAISKDFVEAHGGTLSVDSAVGKGSTFVI 567


>gi|284172996|ref|YP_003406377.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284017756|gb|ADB63704.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 361

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            + +  +   +   A + S   HD+  P+  + + L+LL+            E ++    
Sbjct: 131 QRRLEESNERLQQFAYVAS---HDLREPLRMVTSYLQLLESRYSDELDEDAKEFIEFAVD 187

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108
            +      ++ +              SVD    L D+   +          +        
Sbjct: 188 GAERMEAMIEGLLTYSRVETQGKSFESVDLEAVLDDVLTDLSIRIDETGAEITAEPLPTV 247

Query: 109 IDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
              + +  ++  NL   A      +  +VTIS    ++E + S+   G      +    F
Sbjct: 248 SGDASQLRQLFQNLLENALQYSGEQEPRVTISATRDEDEWMISVSDEGIGIDQEDVDRVF 307

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +         I       +   +   +  +   +     S  L
Sbjct: 308 EVFQRLHSHEEYKGTGIGLALCRRIVERHGGEIWVDSEPEEGSTFSFTL 356


>gi|229010689|ref|ZP_04167887.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048]
 gi|229132194|ref|ZP_04261051.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196]
 gi|229166233|ref|ZP_04293992.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621]
 gi|228617178|gb|EEK74244.1| hypothetical protein bcere0007_12070 [Bacillus cereus AH621]
 gi|228651242|gb|EEL07220.1| hypothetical protein bcere0014_11330 [Bacillus cereus BDRD-ST196]
 gi|228750583|gb|EEM00411.1| hypothetical protein bmyco0001_11440 [Bacillus mycoides DSM 2048]
          Length = 466

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 60/215 (27%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + +  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +      E        +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKLK 458


>gi|224535753|ref|ZP_03676292.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522613|gb|EEF91718.1| hypothetical protein BACCELL_00617 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 709

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 61/227 (26%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +AK        +    L  + + H+I +P+ AI     LL   D+   E  +  +   + 
Sbjct: 338 LAKEKAEESDRLKSAFL--ANMSHEIRTPLNAIVGFSSLLAEADDDERESYMSLVEENNE 395

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +   +    + ++    G+V+ +I       L             ++ V + +      +
Sbjct: 396 LLLNLISDILDISKIEAGTVELIITRVDVARLCREVISTCSHKKHEEAVGLRFDESSPQI 455

Query: 112 SRE-----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +       ++L N    A     +G        +      F +   G      ++   
Sbjct: 456 MVDADKNRIMQVLSNFITNALKFTTKGSVTLSYRLEDDGLLHFCVTDTGKGIPAEQQHEI 515

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +      +       L      ++     +         
Sbjct: 516 FSRFVKLDSFSQGAGLGLSICQSLVERMGGQIGVNSREGEGSCFWFT 562


>gi|186683398|ref|YP_001866594.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186465850|gb|ACC81651.1| PAS/PAC sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 379

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 61/219 (27%), Gaps = 22/219 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------------RL 64
            L S + H++  P+ AI     LL     +    ++    +                  +
Sbjct: 155 QLVSMVSHELRVPLNAISFCTNLLKRHSDDWSKKKIQEYVNRLQKGVEMLSLLIDEVLII 214

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF- 123
                           I       + E +     +  +++  +   LS    +I+L +  
Sbjct: 215 GRAEAGKLKFDPKPLNIFQFCRNLLAELYPNESYQNSINFRCQDDCLSTNLDRIMLQIIL 274

Query: 124 ----MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST---- 175
                 A    P GG V   V     + IF +K  G      ++  ++ +          
Sbjct: 275 TNLLENALKYSPSGGIVDFIVYHQDGKVIFRIKDRGIGILPGDR-ERLFEPFYRGKNVED 333

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  H +    V  L   +  ++  E         +  L 
Sbjct: 334 LPGHGLGLAIVKKLVDIHGGQITVESQIGVGTEFALALP 372


>gi|149375878|ref|ZP_01893645.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
 gi|149359758|gb|EDM48215.1| PAS/PAC sensor hybrid histidine kinase [Marinobacter algicola
           DG893]
          Length = 1054

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 57/236 (24%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           A++I        +     S + H++ +P+ ++  ++ L+       I ++  +L+  +  
Sbjct: 556 AQDITERKRLEQMKTEFISTVSHELRTPLTSVSGAIGLVLGGRLGDIPEKAQELLNTAQR 615

Query: 59  SAIIRLK---------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           ++                                     L +      +        +  
Sbjct: 616 NSERLAHLINDLLDTDKIAAGKIHFDMQVTPIIPILEQSLEENRTYCAEQNLKLVLTRKL 675

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +   ++L NL   A    P GG V+I    +  +   S+   G       +
Sbjct: 676 TQTSVKVDVQRLKQVLANLLSNAIKFSPDGGTVSIEATSTDTDITVSVVDQGPGIPEDFQ 735

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +       L       +  E  +         L 
Sbjct: 736 HKVFQKFAQADSSDTRQKGGTGLGLAITRELVKRMGGTIGFETTEGKGTRFFFTLP 791


>gi|34498958|ref|NP_903173.1| sensor/response regulator hybrid [Chromobacterium violaceum ATCC
           12472]
 gi|34332887|gb|AAQ61164.2| probable sensor/response regulator hybrid [Chromobacterium
           violaceum ATCC 12472]
          Length = 1229

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 68/245 (27%), Gaps = 35/245 (14%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + +     LS     A           + + H+I +P+ AI   L+L+ + G+       
Sbjct: 483 LEREREAWLSQAKSAADSANRAKSEFLANMSHEIRTPMNAILGMLQLIQQTGLNARQADY 542

Query: 53  IRLSSMSAIIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
              +S +A   L  +                         +   +G+     V +  + V
Sbjct: 543 ADKASSAARTLLGILNDILDFSRVEVGKLTLAPHPFSIDKLLRDVGVIMSANVGDKDVEV 602

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLK 152
              +           S    +IL+NL   A     RG  V         ++     FS++
Sbjct: 603 LFDIDPELPDWISADSLRLQQILINLSGNAIKFTERGEVVIAARLARRDEAGLRIAFSVR 662

Query: 153 INGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             G     PE   +I +G                +       L      +L  E  +   
Sbjct: 663 DTGIGI-APEHLQRIFEGFSQAEASTARRYGGSGLGLAISQRLVALMGGQLTVESEEGKG 721

Query: 207 VVLSA 211
            V   
Sbjct: 722 SVFRF 726


>gi|134298627|ref|YP_001112123.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134051327|gb|ABO49298.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 474

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-----MSAIIRLKFMRLAFG 72
             + + H++ +P+  I  +++L+  +G E   ++   +             +  M +   
Sbjct: 252 FVADVSHELKTPLTTIRGNIDLIRRMGEEHPDIRQEAMEDIASEAERMSRLVLDMLVLAR 311

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-----------KILLN 121
               +   +    + +VI+      K +      +                    +++L 
Sbjct: 312 ADAGLTLPLEPVFLSKVIQQVGRQAKLLAKDIEFKITVEESCEQVQILADTDYVKQLVLI 371

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178
           L   A       G V + V  +       +K NG      E    F +    +    +  
Sbjct: 372 LLDNAFKYTASPGVVELLVHCTHEHVKIHVKDNGVGIEQAELEHIFERFYRSDKSRPVGG 431

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A +++  +    I            
Sbjct: 432 SGLGLSIAKWIAEQHQATITVNSILHKGSTFIITFP 467


>gi|332707718|ref|ZP_08427745.1| PAS domain S-box protein [Lyngbya majuscula 3L]
 gi|332353421|gb|EGJ32934.1| PAS domain S-box protein [Lyngbya majuscula 3L]
          Length = 930

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            K +        L +   S + H+  +P+  I +S ++L           + +    I+ 
Sbjct: 689 RKALAKEKELGQLRSGFVSLVSHEFRTPLTTIQSSAQMLQRYEQKLSAEKKLKHHDKIQH 748

Query: 56  SSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           + +     L             ++        V     + +  ++   F      +    
Sbjct: 749 AVLRMTQLLDDVLTIGKADAGKLKFEPEPMDLVALCQDILENIKINLGFNHNLIFLSHGS 808

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             + +   R  + ++ NL + A    P GG +   +  + +  +  ++  G      +++
Sbjct: 809 CQDVLIDERLLSHVVNNLLLNAIKYSPEGGTIKFELNCNSSTAVIQVQDQGIGIPKKDQY 868

Query: 165 ---TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   +I    +    V      ++  +            +  L 
Sbjct: 869 QLFESFERASNVGSIPGTGLGLAIVKKCLDLHEGTIAVNSEVGVGTTFTVTLP 921


>gi|294506751|ref|YP_003570809.1| Signal transduction histidine kinase [Salinibacter ruber M8]
 gi|294343079|emb|CBH23857.1| Signal transduction histidine kinase [Salinibacter ruber M8]
          Length = 768

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 55/235 (23%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
           AK      S M     L +   H+  +P+ +I    E +     D+          I  S
Sbjct: 512 AKQEAEEASQMKSA--LLANTSHEFRTPLTSIIGFAEEIATMAEDDDAPIGRFADHIENS 569

Query: 57  SMSA-IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
                      + L+    G++       D+  V E+         V             
Sbjct: 570 GRRLLGTLDAILNLSRLQGGTLRRPSEPTDMTTVAEEAADQFYPEAVEADIALRTEANGT 629

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                         L NL   A      GG V I V+      +  ++  G         
Sbjct: 630 PVWTRADPEGLRIALQNLISNAVKYTEPGGDVWIRVRTGDEAAVLEVEDTGVGMDPAQTE 689

Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +     +    +   +          +    +  E         +  L 
Sbjct: 690 TLFEPFRQESEGMGREYEGTGLGLAVTKEAVEQMGGAIEVETEKGAGSRFTVRLP 744


>gi|291458569|ref|ZP_06597959.1| sensor histidine kinase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419102|gb|EFE92821.1| sensor histidine kinase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 347

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +     + +     +L S I HD+ +P+  I    E + +        + + ++ I  
Sbjct: 101 LKETQEEKIRNDTENKVLISNIAHDLKTPLTTIKGYSEGILDGIAKSPERQQKYIRTIYN 160

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------------AVDKRVQV 102
            +      +  +        +           +                       + +V
Sbjct: 161 KANDMDRLIDELNYYAKIETNKIPYHFRRISVREYFSDCADEIGLDMESKGYRFSYKNEV 220

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF- 160
             +   +    +  K++ N+   +   + +   +V I V D+ +     +  NG   +  
Sbjct: 221 EDSVLMLADPEQLRKVVNNIISNSVKYMDKANPEVRIFVGDAGDFVEVRIFDNGRGIQSS 280

Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +    +           I       +  ++  R+  E  +     +   L K
Sbjct: 281 ALPYVFERFFREDSSRNSRKGGSGIGLSIARKIIEDSGGRIWAESAEGAGTTIHFTLRK 339


>gi|227821337|ref|YP_002825307.1| two component sensor kinase [Sinorhizobium fredii NGR234]
 gi|227340336|gb|ACP24554.1| two component sensor kinase [Sinorhizobium fredii NGR234]
          Length = 527

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 64/224 (28%), Gaps = 27/224 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            L + + H++ +P+ AI    ++L          D   + + L   S    L  +     
Sbjct: 249 FLAA-VSHELRTPLNAILGFSDVLTGEYFGKLENDRQREYVSLIHRSGTHLLSVVNTMLD 307

Query: 73  YTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AK 117
            +        L                 +         R+    T    +++ ++    +
Sbjct: 308 VSKIEAGRYELVPEPFRVADAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAVQQ 367

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------ 171
           IL+NL   A     +GG VT+  +        ++   G      +K  ++          
Sbjct: 368 ILINLVGNAVKFTDKGGLVTVDAEVDGAMLNLTVSDTGIGI-AEDKLEKLGQPFVQIQND 426

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +   +    V  L   +   +     +    V+   + +
Sbjct: 427 YTRRYEGTGLGLSLVKGLVELHGGGISIRSSEGEGTVVVVSIPR 470


>gi|163746360|ref|ZP_02153718.1| phosphate regulon sensor protein, putative [Oceanibulbus indolifex
           HEL-45]
 gi|161380245|gb|EDQ04656.1| phosphate regulon sensor protein, putative [Oceanibulbus indolifex
           HEL-45]
          Length = 350

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 14/240 (5%), Positives = 58/240 (24%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++     +  +     + + H++ +P+ A+   +E L     D+    +  + ++   + 
Sbjct: 105 DVTEMAQAGQMRRDFVANVSHELRTPLTALIGFIETLQGPARDDTAARERFLGIMAQEAE 164

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKI 109
                +  +                              +       +  +      E  
Sbjct: 165 RMNRLVGELLSLSRVEAEERVRPEAPLDVRDVLGGTLRNLGPLAADSNVTLVPQLGEEPA 224

Query: 110 DLSRERAKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLKINGNLA- 158
            +  +  +++     +   ++                +            S++ +G    
Sbjct: 225 HVLGDADQLMQVFTNLIENAIKYGGRDSSVEISTEIASYDPAMRGPAVHVSVRDHGPGID 284

Query: 159 --RFPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               P    +      +    +    +    V  + + ++ RL              +L 
Sbjct: 285 AIHLPRLTERFYRVDSHRSRALGGTGLGLAIVKHIMNRHRGRLKITSTSGQGAEFRVILP 344


>gi|162448894|ref|YP_001611261.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159476|emb|CAN90781.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 918

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
           + + H++ +P+ AI     +L +  ++ +       +          +            
Sbjct: 549 ATLSHELRTPLTAILGWARMLRQGSLKPDTHVRALEAIERNGTLQAQLVEDLLDASRIIT 608

Query: 71  ---FGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123
                    VD    +      V     A    + V        +S ++    +++ NL 
Sbjct: 609 GKLRLDVMLVDLPPIINAAIDAVRHGADAKGIELLVQLDPNAGPISGDQTRLQQVVWNLL 668

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE--STIDS 178
             A    PRGGKV+I +  ++      +   G           F +    +         
Sbjct: 669 SNAIKFTPRGGKVSIQLGRAEGLARIQVSDTGQGIVPEFLPYVFDRFRQADSTSTRPHSG 728

Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             +       L   +   +  E   D      +  + 
Sbjct: 729 LGLGLAIARHLIELHGGTVKAESAGDGKGATFTVDIP 765


>gi|149200167|ref|ZP_01877190.1| sensory box histidine kinase [Lentisphaera araneosa HTCC2155]
 gi|149136704|gb|EDM25134.1| sensory box histidine kinase [Lentisphaera araneosa HTCC2155]
          Length = 385

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 78/231 (33%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
                     + L+ +L + + H++ +P+ +++  L+LL         DE     E++ +
Sbjct: 137 QSQSQNESEQLRLLTMLAAGVAHELGNPLNSLNIHLQLLNRLMKQIEGDEGDEARELLGV 196

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107
                      ++    A          I L  I       + ++    +  +++S    
Sbjct: 197 ASGEIERLDTIIRQFLGALRSDKPEMKAIELTSILREALQFMTKEIEDRNIELEISIPER 256

Query: 108 KIDLSRERAKI---LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +  ++     N+   A  ++P+GGK+ +      +    S    G      +  
Sbjct: 257 TPPIEGDETQLKQAFFNIMKNAIQAMPQGGKLALLCTGDDDFINISFADTGGGIDLNKIG 316

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I +           +  + V  +  E+  RL     ++   +L+  L +
Sbjct: 317 -KIFNSYKSDRHSGTGLGIFIVEKIIREHGGRLDISSAEEKGTILTISLPR 366


>gi|83815646|ref|YP_444896.1| sensory transduction histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83757040|gb|ABC45153.1| sensory transduction histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 757

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 55/235 (23%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
           AK      S M     L +   H+  +P+ +I    E +     D+          I  S
Sbjct: 501 AKQEAEEASQMKSA--LLANTSHEFRTPLTSIIGFAEEIATMAEDDDAPIGRFADHIENS 558

Query: 57  SMSA-IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------- 106
                      + L+    G++       D+  V E+         V             
Sbjct: 559 GRRLLGTLDAILNLSRLQGGTLRRPSEPTDMTTVAEEAADQFYPEAVEADIALRTEANGT 618

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                         L NL   A      GG V I V+      +  ++  G         
Sbjct: 619 PVWTRADPEGLRIALQNLISNAVKYTEPGGDVWIRVRTGDEAAVLEVEDTGVGMDPAQTE 678

Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +     +    +   +          +    +  E         +  L 
Sbjct: 679 TLFEPFRQESEGMGREYEGTGLGLAVTKEAVEQMGGAIEVETEKGAGSRFTVRLP 733


>gi|325662200|ref|ZP_08150815.1| hypothetical protein HMPREF0490_01553 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471452|gb|EGC74673.1| hypothetical protein HMPREF0490_01553 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 453

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
           M + +              S + H++ +P+  +    +  L E  + D   + I L +  
Sbjct: 223 MLEQLEMVFQREK---RFTSDVSHELRTPVSVMLAQCDACLSEETLTDRQREQIELIAKK 279

Query: 60  AIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           A      +      +                 +    + + +Q+I +   +  R  ++  
Sbjct: 280 AREMAGLISSLLLLSRADEGRQKLNKERVNLSELTQIIAEEQQMIAEEKEITVRTDITPD 339

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++++NL   A      GG V IS+Q  +   +  ++ NG      +   
Sbjct: 340 IYAQVDESFYIRMVVNLVSNAVFYGREGGIVKISLQVKEENVVGIVEDNGIGISVHDMEH 399

Query: 163 KFTQIVDGNVESTIDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +   T  SH  +    V  +A  +  R+  E  +      +  + 
Sbjct: 400 IWERFYRADTSRTDGSHSGLGLSMVKWIAEAHGGRVSVESREGEGSRFTFYIP 452


>gi|322514684|ref|ZP_08067712.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976]
 gi|322119382|gb|EFX91491.1| sensor histidine kinase [Actinobacillus ureae ATCC 25976]
          Length = 616

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 64/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           ++L + I H++ +P+  I     +L E  +  +  + ++  ++SA+              
Sbjct: 116 SVLMATISHELRTPLNGIIGLSRILLEGELTQQQREYLKTINISAVSLGHIFSDIIDLEK 175

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--LSRERAKIL 119
                             +  + +   ++ D   +   +  S          +   +++L
Sbjct: 176 IDSRRIELFNKEVEFSQLISDISNFANLMADQRKIKFHISYSDNLPNFILVDNARLSQVL 235

Query: 120 LNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES---- 174
            NL   A    P GG +     +   +   FSL+  G      E+               
Sbjct: 236 WNLVSNAVKFTPAGGDIYLDVQRVDDDHFSFSLRDTGIGIPKNEQRKVFAMFYQAENSQE 295

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L  E  +      +  ++
Sbjct: 296 KKAQGSGIGLAISKRIAKLMGGDLTLESEEGKGSTFTLTIQ 336


>gi|226310461|ref|YP_002770355.1| sensory histidine kinase AtoS [Brevibacillus brevis NBRC 100599]
 gi|226093409|dbj|BAH41851.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 607

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 68/227 (29%), Gaps = 16/227 (7%)

Query: 2   AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSM 58
            +       +  L  +    + I H++ +P+ AI    ++++E    +    +   +   
Sbjct: 376 RRMESRLAQAERLAVIGEWATSIAHEVRNPLTAIKAFAQIIEEEWPKDHGSREYTGIIVE 435

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------VQVSWTGE 107
                 +F      ++   +       +++VI+  + + +            V       
Sbjct: 436 EVERLNRFTDELLLFSRPNEESNVPVRVQEVIQHTLKLMEHAEGFNGVNVQLVYNEDIPA 495

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       ++ LN+   A  + P  G++ I +++  N+    +   G           I
Sbjct: 496 VMSSPELLKQVFLNILHNALQAKPMEGRIQIDIKNINNDVHVQITNEGPPIAEENLLA-I 554

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +       +  +      V  + +L 
Sbjct: 555 FEPFFTTKQTGTGLGLAISQRIVQVYGGHIFAQNTP-EGVCFTVVLP 600


>gi|240146423|ref|ZP_04745024.1| sensor histidine kinase [Roseburia intestinalis L1-82]
 gi|257201429|gb|EEU99713.1| sensor histidine kinase [Roseburia intestinalis L1-82]
          Length = 347

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  E  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWMNLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G + + ++  K+  +F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|225377202|ref|ZP_03754423.1| hypothetical protein ROSEINA2194_02848 [Roseburia inulinivorans DSM
           16841]
 gi|225210962|gb|EEG93316.1| hypothetical protein ROSEINA2194_02848 [Roseburia inulinivorans DSM
           16841]
          Length = 304

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  E  + +     +       +      +   
Sbjct: 85  FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 144

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 145 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWMNLLD 204

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G + + ++  K+  +F L+  G           F +    +     + + +
Sbjct: 205 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 264

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 265 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 297


>gi|212639756|ref|YP_002316276.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561236|gb|ACJ34291.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 448

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 15/216 (6%)

Query: 13  DLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE----------VMQLIRLSSMSA 60
            L   + + +   H+I +P+  +   ++ L++   ++            +          
Sbjct: 229 KLATVSEMAASFAHEIRNPLTTVRGFVQFLNQDTTDENVKKYAPIMLEELDRTNEIITEY 288

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           +   K            D L     +   +     V  ++      +         + LL
Sbjct: 289 LSLAKPAPFQLQKVNIDDVLHTSVHLLSPLGTMTNVSLQLYTEGKSDVYGDEHYLKQALL 348

Query: 121 NLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
           N+      ++  G    +  +V + + E I ++   G      E+  +I      +    
Sbjct: 349 NVIKNGIEAIEYGGLVTIHKTVDEKEKEVIITIHDTGKGM-TEEQLKKIGLPYYTTKSKG 407

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       L  E    +  E   +    ++  L 
Sbjct: 408 TGLGSMITARLIREMGGTITYESRLNVGTTVTITLP 443


>gi|209524981|ref|ZP_03273526.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209494630|gb|EDZ94940.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1242

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     L +  L +   + + H+I +P+  +     LL +  ++ +    ++    SA
Sbjct: 568 LVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTSA 627

Query: 61  IIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKR---------VQVSW 104
              L  +     ++          +    L +  + I D +A             V  + 
Sbjct: 628 DHLLSIINDILDFSKLEAQEIELEELDFDLEECLENIIDLLAAQAENKGIELAAIVDRNV 687

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLA 158
                       ++LLNL        P      R  +      ++     + ++  G   
Sbjct: 688 PRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRVSRPPNYDINAPLTLRYEVQDTGIGI 747

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E   ++ +                 +       L       +  E + D        
Sbjct: 748 -PAEAQERVFEAFSQVDASTTRKFGGTGLGLVICKQLLEVMGGEIGLESVVDQGSTFWFT 806

Query: 213 LE 214
           L 
Sbjct: 807 LP 808


>gi|197302213|ref|ZP_03167272.1| hypothetical protein RUMLAC_00940 [Ruminococcus lactaris ATCC
           29176]
 gi|197298644|gb|EDY33185.1| hypothetical protein RUMLAC_00940 [Ruminococcus lactaris ATCC
           29176]
          Length = 347

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  E  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWMNLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G + + ++  K+  +F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|30261402|ref|NP_843779.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47526578|ref|YP_017927.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184232|ref|YP_027484.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49480021|ref|YP_035527.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|165870335|ref|ZP_02214990.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167634324|ref|ZP_02392645.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167639386|ref|ZP_02397658.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170686693|ref|ZP_02877913.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170706391|ref|ZP_02896852.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177651547|ref|ZP_02934336.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190568704|ref|ZP_03021608.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|196035324|ref|ZP_03102729.1| sensor histidine kinase [Bacillus cereus W]
 gi|196040758|ref|ZP_03108057.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|218902507|ref|YP_002450341.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227815859|ref|YP_002815868.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|228913969|ref|ZP_04077593.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228926430|ref|ZP_04089502.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228944998|ref|ZP_04107359.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229120939|ref|ZP_04250181.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201]
 gi|229604389|ref|YP_002865818.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254682540|ref|ZP_05146401.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254726202|ref|ZP_05187984.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254733958|ref|ZP_05191672.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254740354|ref|ZP_05198045.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254753742|ref|ZP_05205777.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254758838|ref|ZP_05210865.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|30255256|gb|AAP25265.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47501726|gb|AAT30402.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178159|gb|AAT53535.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|49331577|gb|AAT62223.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164713830|gb|EDR19352.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167512825|gb|EDR88199.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167530212|gb|EDR92938.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170128925|gb|EDS97791.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170669216|gb|EDT19959.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172082825|gb|EDT67888.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190560120|gb|EDV14101.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|195992001|gb|EDX55964.1| sensor histidine kinase [Bacillus cereus W]
 gi|196028548|gb|EDX67156.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|218537752|gb|ACK90150.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|227003278|gb|ACP13021.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|228662599|gb|EEL18197.1| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201]
 gi|228814667|gb|EEM60927.1| hypothetical protein bthur0007_11640 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228833254|gb|EEM78819.1| hypothetical protein bthur0010_11490 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228845691|gb|EEM90718.1| hypothetical protein bthur0012_12070 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229268797|gb|ACQ50434.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 466

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    S+K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKLK 458


>gi|37519945|ref|NP_923322.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35210937|dbj|BAC88317.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 577

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 19/219 (8%), Positives = 56/219 (25%), Gaps = 24/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR----------- 68
           + + H++ +P+  I    ++L    +  E+      +          +            
Sbjct: 355 AMLSHELRTPLNPIIGWTQMLRRGNLTPEMQAKALETIERNGKLQNQLIEDLLDISRIIR 414

Query: 69  -LAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRERAKILLN 121
                    ++    L    + + +           +    +   +         +++ N
Sbjct: 415 GKFSIAPIPIELPPVLHSAIEAVRNLAEQKEVLLDCRCEPSALNRQVSADPTRLQQVIWN 474

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           L   A    P+GG+V + +         +++ NG                          
Sbjct: 475 LLTNAIKFTPKGGRVEVDLAGDSANLYVAVRDNGMGIAPEFLPYMFERFRQADSRSTRKE 534

Query: 177 DSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
               +  + V  +   +   +  E   +    V +  L 
Sbjct: 535 GGLGLGLFIVRHIVELHGGMVQAESEGEGKGAVFTVELP 573


>gi|15642707|ref|NP_232340.1| osmolarity sensor protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121586634|ref|ZP_01676419.1| osmolarity sensor protein EnvZ [Vibrio cholerae 2740-80]
 gi|153817434|ref|ZP_01970101.1| osmolarity sensor protein EnvZ [Vibrio cholerae NCTC 8457]
 gi|153821278|ref|ZP_01973945.1| osmolarity sensor protein EnvZ [Vibrio cholerae B33]
 gi|229507239|ref|ZP_04396744.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae BX
           330286]
 gi|229509840|ref|ZP_04399321.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae B33]
 gi|229606745|ref|YP_002877393.1| osmolarity sensor protein [Vibrio cholerae MJ-1236]
 gi|254851250|ref|ZP_05240600.1| osmolarity sensor protein EnvZ [Vibrio cholerae MO10]
 gi|255744329|ref|ZP_05418281.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholera CIRS 101]
 gi|262158561|ref|ZP_06029676.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae INDRE
           91/1]
 gi|297581548|ref|ZP_06943471.1| osmolarity sensor protein EnvZ [Vibrio cholerae RC385]
 gi|298500472|ref|ZP_07010276.1| osmolarity sensor protein EnvZ [Vibrio cholerae MAK 757]
 gi|9657310|gb|AAF95853.1| osmolarity sensor protein EnvZ [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121549193|gb|EAX59226.1| osmolarity sensor protein EnvZ [Vibrio cholerae 2740-80]
 gi|126512020|gb|EAZ74614.1| osmolarity sensor protein EnvZ [Vibrio cholerae NCTC 8457]
 gi|126521210|gb|EAZ78433.1| osmolarity sensor protein EnvZ [Vibrio cholerae B33]
 gi|229353314|gb|EEO18253.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae B33]
 gi|229354744|gb|EEO19665.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae BX
           330286]
 gi|229369400|gb|ACQ59823.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae MJ-1236]
 gi|254846955|gb|EET25369.1| osmolarity sensor protein EnvZ [Vibrio cholerae MO10]
 gi|255737854|gb|EET93247.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholera CIRS 101]
 gi|262029722|gb|EEY48371.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae INDRE
           91/1]
 gi|297534386|gb|EFH73224.1| osmolarity sensor protein EnvZ [Vibrio cholerae RC385]
 gi|297540641|gb|EFH76698.1| osmolarity sensor protein EnvZ [Vibrio cholerae MAK 757]
          Length = 438

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +    +     +       + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAGLAPALGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|313638847|gb|EFS03910.1| heme sensor protein HssS [Listeria seeligeri FSL S4-171]
          Length = 459

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 62/228 (27%), Gaps = 20/228 (8%)

Query: 8   NLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAII 62
            L   +       + + H++ SP+ ++     LL           E + ++   +     
Sbjct: 231 ELEKSEAARQEFVANVSHELQSPLTSMQGFATLLASDTLTEKERAEYLAVLSEETTRLSS 290

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSWTGEKIDLSRER 115
             K +          +         +V          +    K + ++   ++++ + + 
Sbjct: 291 LTKQLLTLASLDQEAELRKKDQVQLEVQWRQLLQTTEWSWRAKEITINLELDEVNCTGDA 350

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN- 171
               ++  NL   A    P  G + I +    +     ++ +G      +          
Sbjct: 351 ELLYQVWSNLLTNAIKFTPTSGAINIRLYQDASHAFVEVEDSGIGISEADIDKIFQRFYK 410

Query: 172 ----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     S  +       + H +   +  E   +     +  L K
Sbjct: 411 ANQSRTREEGSSGLGLSICKKIIHLHHGEIFVESKSEKGTKFTIKLPK 458


>gi|299768352|ref|YP_003730378.1| phosphate regulon sensor kinase PhoR [Acinetobacter sp. DR1]
 gi|298698440|gb|ADI89005.1| phosphate regulon sensor kinase PhoR [Acinetobacter sp. DR1]
          Length = 452

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 58/215 (26%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78
            I H++ +P+  +   +E   D+  I     +               +      +   + 
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDISPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMSQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAFFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L  +  ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 445


>gi|291482777|dbj|BAI83852.1| hypothetical protein BSNT_00667 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 472

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           MAK +  +               + + H++ +P+  I+  +E L+        +D+   L
Sbjct: 229 MAKKLKQSRDEIERLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 288

Query: 53  IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   +   +  +K                      ++    + +  Q   +       +Q
Sbjct: 289 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLQQQAEEKQNKLMIQ 348

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           V              +IL+N+   +      G      ++  K      ++  G      
Sbjct: 349 VEDHVIVHADYDRFIQILVNITKNSIQFTQNGDIWLRGMEGYKETI-IEIEDTGIGIPKE 407

Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +    ++         + +    V  L   ++  +  +  +         L 
Sbjct: 408 DIEHIWERFYKADISRTNTAYGEYGLGLSIVRQLVEMHQGTVEIKSEEGKGTKFIIRLP 466


>gi|260774776|ref|ZP_05883679.1| nitrogen regulation protein NR(II) [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609338|gb|EEX35490.1| nitrogen regulation protein NR(II) [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 348

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+ +  +  + +  ++    A
Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDQSLTEYTQIIIEQA 175

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +         G     +  + L  + Q++E  +A    ++  +     +   + 
Sbjct: 176 DRLRSLVDRLLGPQKPGKKQQENLHLILEKVRQLVELEVAQSVTIERDYDPSLPEFLMDS 235

Query: 116 AKILLNLFM---------------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L                           +  I  Q  K      +  NG     
Sbjct: 236 DQIEQALLNIVSNAGQILQKQNNGNIIIRTRTVHQTNIHGQRCKLAARVEIIDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V        +       L  +++ ++  E       + +  L 
Sbjct: 295 AELQDTLFYPMVSGREGGTGLGLSIAQNLIDQHQGKIDVESWPGR-TIFTIYLP 347


>gi|228995639|ref|ZP_04155303.1| hypothetical protein bmyco0003_2400 [Bacillus mycoides Rock3-17]
 gi|229003268|ref|ZP_04161099.1| hypothetical protein bmyco0002_2480 [Bacillus mycoides Rock1-4]
 gi|228757986|gb|EEM07200.1| hypothetical protein bmyco0002_2480 [Bacillus mycoides Rock1-4]
 gi|228764113|gb|EEM12996.1| hypothetical protein bmyco0003_2400 [Bacillus mycoides Rock3-17]
          Length = 336

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 66/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + K     + S +    L S I HDI +P+ +I   ++ L +        + E +++I  
Sbjct: 89  LEKVQIEAVKSHESRKQLLSSISHDIRTPLTSIIGYVDALKDDIATSEEEKREYLEIISK 148

Query: 56  SSMSAIIR------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVS 103
            S +          +  +                   E +IE    + K           
Sbjct: 149 KSGNLKQLVDEIFNMAKLDADEFPLKEEPLNFAEIARESLIEFLPELTKHDLELQVSIPE 208

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        +++ NL   A      G  + I + ++ NE    +   G      + 
Sbjct: 209 TPCPVTADYLSLIRVIGNLMKNAIYYGKSGKIIGIKLLETTNEYQLLIWDKGPGISKHDL 268

Query: 163 --KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N  ++  E I          + K
Sbjct: 269 NNVFERMYRSEQSRNHSHGGSGLGLAIAKALVEKNGGKIWVESIPWERTTFGFSIPK 325


>gi|251795024|ref|YP_003009755.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247542650|gb|ACS99668.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 626

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 72/221 (32%), Gaps = 11/221 (4%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           N       MD+++ L + + H++ +P+      L+LL+E    ++    + L+       
Sbjct: 405 NELQRSEKMDMISQLAASVAHEVRNPLQVTRGFLQLLEEKSGSNKEKNYMLLAINELDRA 464

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIED----------FIAVDKRVQVSWTGEKIDLSR 113
            + +     +       + + +I    +                 R+ +    +    S 
Sbjct: 465 SEIITDFLTFAKPQLEHVSVLNIANEFKHIGTILIPLANMQGGQIRLNIPDHLQINGNSS 524

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +  +  +N+   +  +L   G++ IS     N  +  +K NG      E   ++ +    
Sbjct: 525 KFKQAFINMIKNSIEALKNEGRIDISGYMEGNRVVICIKDNGEGMTEAELV-KLGEPYYS 583

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +       +    +  ++ + I      ++    
Sbjct: 584 NKSKGTGLGLMVTFSIIEVMQGDIVFKSIKGIGTEVTVTFP 624


>gi|167758625|ref|ZP_02430752.1| hypothetical protein CLOSCI_00965 [Clostridium scindens ATCC 35704]
 gi|167663821|gb|EDS07951.1| hypothetical protein CLOSCI_00965 [Clostridium scindens ATCC 35704]
          Length = 497

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 24/222 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           L S I HD+ +P+ AI    E + +      E M+    +  +    +  +         
Sbjct: 269 LISNISHDLKTPVTAIKGYAEGIMDGVADTPEKMERYIRTIYNKANEMDTLINELTLYTK 328

Query: 77  VDSLIGLGDIEQVIEDFIAVDK-----------------RVQVSWTGEKIDLSRERAKIL 119
           +D+     +   +  +    D                     V  + + I  + +  +++
Sbjct: 329 IDTNRIPYNFNTLSVNAYFDDCVEDLSIELESKNVEFGYFNYVEGSVKVIADAEQIKRVI 388

Query: 120 LNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
            N+   +   + +        V+D  +     L+ NG      +    F +    +    
Sbjct: 389 HNIVNNSLKYMDKPKGKINLRVKDVGDFIQVELEDNGKGIAAKDLPNIFDRFYRTDASRN 448

Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  I    V  +  E+  ++     ++    +  +L K
Sbjct: 449 SSKGGSGIGLSIVKKIIEEHGGKIWATSREETGTTMYFVLRK 490


>gi|158333594|ref|YP_001514766.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158303835|gb|ABW25452.1| sensory transduction histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 726

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 75/232 (32%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMD----LV--ALLCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVMQ 51
           +A++I     +      L     L + I H++ +P+  +   L   + +D        +Q
Sbjct: 490 LARDITERRQAEKDRERLAEIGELAAMIVHEVRNPLTTVLMGLNSFQRMDLPDRAKLRLQ 549

Query: 52  LIRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVS 103
           L    S      L     + +     T +V+      D+   +++  +   R    +   
Sbjct: 550 LALEESERLQRLLNEILLYAKQQKLDTTAVELNQLFADMLPTLQEMPSAADRPIQLMPAD 609

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK-INGNLARFPE 162
            +        +  ++ +NL   A  ++P G  +   +Q    ++   ++  NG      +
Sbjct: 610 ESAWVDADIDKLKQVFINLVSNACEAVPEGEPIIWQLQIVALQDQVKIEVNNGGDPIPAD 669

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              Q+      +    + +       +   +   L+ +        ++  L 
Sbjct: 670 VLPQLTKPFFTTKSSGNGLGLAITKRIVETHGGELVIQSSAASGTTVTVSLP 721


>gi|144901017|emb|CAM77881.1| sensor protein [Magnetospirillum gryphiswaldense MSR-1]
          Length = 906

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
           K     L+ +D +     S + H++ +P+ +I +  E+L      +     E + +I   
Sbjct: 662 KAANERLTELDRMKDDFISTVTHELRTPLTSIRSFSEILFDNPGIDEAQRLEFLAIIIKE 721

Query: 57  SMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           S      +                              +     + ED     +      
Sbjct: 722 SERLTRLINQVLDMAKMESGRMTWHFVMVEPRQLIQDSIAATGALFEDRRVTLETRLADD 781

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  + +  ++++NL   A   +    G+V +++  + N     +  NG        
Sbjct: 782 LPPLRTDADKFMQVVINLLSNAVKFVEAGQGRVRLTLAATANGIRVEVADNGPGLPANAL 841

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +      +       +      R+  + I+      +  L 
Sbjct: 842 EAVFDKFHQVGDTLTNKPKGTGLGLAISRTIVEHLGGRIWVDSIEGQGATFTFDLP 897


>gi|110833203|ref|YP_692062.1| sensory box histidine kinase [Alcanivorax borkumensis SK2]
 gi|110646314|emb|CAL15790.1| sensory box histidine kinase [Alcanivorax borkumensis SK2]
          Length = 982

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 63/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       +  L ++  L + I H+I +P+ AI    + LD     +E ++  +    
Sbjct: 743 LRQMEAHLTHNERLASIGRLAAGIAHEIGNPVTAIACLAQNLDSETDAEEQLESSQQILE 802

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
                 + +     ++ S            + +        + +     +          
Sbjct: 803 QTRRITRIVESLVTFSHSGGIRHSQHVPVNIRDTVDEAVSLLLLDPDHRQQPFDNRSKPE 862

Query: 117 -----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++ +NL   A  +      V I    +       ++  G+     E   
Sbjct: 863 HWVQGDPQRLLQVFINLLGNAADASIDKQPVVILSNATDQAVNVIVEDQGHGI-PEELRD 921

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLE 214
            + +  V S        +    V  +  E+   +  E    +         L 
Sbjct: 922 ALFEPFVTSKPPGRGTGLGLALVYSIIKEHLGSIQVESPVAEQGGTRFIIQLP 974


>gi|46202705|ref|ZP_00052736.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 686

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------- 56
            +  +   ++  A + S   HD+  P+  I++ L LL +  +     +            
Sbjct: 459 ELKESNQELEQFAYVAS---HDLRQPLRMINSYLGLLRKKLVSSFDAEAEEYFAFASDGA 515

Query: 57  ---SMSAIIRLKFMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKID 110
                     L+F R+        VD    L D  Q +   I+                 
Sbjct: 516 RRLDQMISDLLEFSRIGKQSAWESVDLNGVLADGLQNLHVAISDSGACVTMPEGLPVIPG 575

Query: 111 LSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              E  ++  NL   A    P   K    I+  D   + I S+K NG          ++ 
Sbjct: 576 DRSELTRLFQNLIGNALKYCPPERKPAVEIACGDGGRDWILSVKDNGIGIEADCL-ERVF 634

Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +  +   I       +A  +  R+  E + D        L K
Sbjct: 635 GIFQRLVSRTQYEGTGIGLAVCRKIAEHHGGRIWVESVLDQGSTFFVTLPK 685


>gi|327482123|gb|AEA85433.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 743

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 74/240 (30%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRLS 56
            ++    L    L AL  L + I H+  + + ++       E+L         ++  + S
Sbjct: 358 ERSHQALLQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRS 417

Query: 57  SMSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +  A    + +             VD  + +  + +++   +     + +          
Sbjct: 418 ARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPNRVTLTLELPEGAWPTV 477

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQD------------SKNENIFSLKINGNL 157
            +  +  L +      A  ++P GG + I++              +       ++ +G  
Sbjct: 478 LDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGLAAGPYLCVDVEDSGCG 537

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE    + +    +    +   +    V   A ++   +  +        +S LL +
Sbjct: 538 M-SPEVQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQSELGKGTRVSLLLPR 596


>gi|327403490|ref|YP_004344328.1| integral membrane sensor signal transduction histidine kinase
            [Fluviicola taffensis DSM 16823]
 gi|327318998|gb|AEA43490.1| integral membrane sensor signal transduction histidine kinase
            [Fluviicola taffensis DSM 16823]
          Length = 1205

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1    MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            +A        S    A   +  ++ H+I +P+  +  S++ L       +    + + ++
Sbjct: 970  LADAAARLAQSERESAWREMAKQVAHEIKNPLTPMKLSVQHLQRVFDPNDPKAAERIERV 1029

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVS 103
                                +      ++   DI +++            I V  ++  +
Sbjct: 1030 TNSLIEQIDALTSIANEFSNFAKLPQPIMTEVDILELLNAVAALFDGDGKIHVQVQLNTT 1089

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP 161
                         ++L NL      +     +  I  S+  +++     ++ NG      
Sbjct: 1090 EQLIIPADKEMILRVLNNLVSNGIQAASITSESHIGLSIDANEDFVFIRVRDNGTGIAED 1149

Query: 162  EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  T I +    +      +    V  +   +   +  E        +   L +
Sbjct: 1150 QIQT-IFEPYFTTKSTGTGLGLAMVKQIVETHHGSIEIENTSPEGTTVLVTLPR 1202


>gi|227889701|ref|ZP_04007506.1| phosphate regulon sensor histidine kinase [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849746|gb|EEJ59832.1| phosphate regulon sensor histidine kinase [Lactobacillus johnsonii
           ATCC 33200]
          Length = 552

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 63/216 (29%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     +   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQGSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ +++ I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRSQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|209514966|ref|ZP_03263835.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209504592|gb|EEA04579.1| multi-sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 1042

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 61/234 (26%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSS 57
           AK      S     +   + + H++ +P+ ++    +LL         + + + +I+ S 
Sbjct: 582 AKEAAEKASRAK--SEFLASMSHELRTPLNSVLGYAQLLRCEEELSQRQRKALNVIQQSG 639

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104
                 ++ +                +VD    L  I ++                    
Sbjct: 640 EHLQRLIEEILDMAKIEAGTLDIVAENVDLHRMLDGIVEITRSRAQSKGLAFTFAPGADV 699

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   R   ++L+NL   A      G  V  ++   +    F ++  G   R     
Sbjct: 700 PAVVSADERRLCQVLMNLLDNAIKYTRHGEVVLRTMMH-ERAVCFVVEDTGLGIRPEHLS 758

Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +        ++   +       L H     L               LE
Sbjct: 759 EIFDVFHQVRDPSMTVEGTGLGLAISKRLVHLMGGELQVASKPHEGSRFWFELE 812


>gi|146283794|ref|YP_001173947.1| hypothetical protein PST_3477 [Pseudomonas stutzeri A1501]
 gi|145571999|gb|ABP81105.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 762

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 74/240 (30%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRLS 56
            ++    L    L AL  L + I H+  + + ++       E+L         ++  + S
Sbjct: 377 ERSHQALLQGQKLEALGNLTAGISHEFNNLLQSMTMGLQLAEMLTSHPRARRAIEGCQRS 436

Query: 57  SMSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +  A    + +             VD  + +  + +++   +     + +          
Sbjct: 437 ARRATRLTRHLMTFSRSRTADAEQVDLRVLIIGMHELLTGALPNRVTLTLELPEGAWPTV 496

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQD------------SKNENIFSLKINGNL 157
            +  +  L +      A  ++P GG + I++              +       ++ +G  
Sbjct: 497 LDPVQCELAVLNLAINARDAMPEGGPLVIALHQLTLVQDNPFGLAAGPYLCVDVEDSGCG 556

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              PE    + +    +    +   +    V   A ++   +  +        +S LL +
Sbjct: 557 M-SPEVQAHVFEPFFTTKPVGEGTGLGLAQVYGFARQSGGTVSIQSELGKGTRVSLLLPR 615


>gi|153007235|ref|YP_001381560.1| signal transduction histidine kinase NtrB [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030808|gb|ABS28576.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. Fw109-5]
          Length = 351

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           L + + H+I +P+  +  S ELL         E   +I   +      ++ +        
Sbjct: 130 LAAGLAHEIRNPLAGLQGSAELLAREAEGPAREYAAVIAREAKRVDGLVRELLDLARPAA 189

Query: 76  SV----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAH 127
                 D    +GD+  ++      ++   V      +        +  ++LLNL   A 
Sbjct: 190 LQTAAIDLHEIVGDVLVLVRGIPGAERVTFVERYDPSLPKLHLDAEKLTQVLLNLVRNAL 249

Query: 128 ASLPRGGKVTIS-------------VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++       I+                ++     S++ NG+    P    ++      S
Sbjct: 250 DAVAGRQGAQIALETGVSSLRLRSASGRTRPLVRLSVQDNGSGIAEPMLH-RLFTPFATS 308

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +  R+  +         +  L 
Sbjct: 309 KAHGTGLGLAVSRRIVEAHGGRIEVKNRAGGGAEANVYLP 348


>gi|300854763|ref|YP_003779747.1| putative two component sensor histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300434878|gb|ADK14645.1| predicted two component sensor histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 467

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 68/237 (28%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
           +A      +  +       A   S   H++ +P+  I     LLD  G +D         
Sbjct: 228 LASTFNKMIDRLQEAFNKQAQFVSDASHELRTPVAVIQGYANLLDRWGKDDRDALEKSIY 287

Query: 50  ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---- 102
              ++   ++++   +       +               I++V+++   +++   +    
Sbjct: 288 GIKLEAANMANLIEKLLFLARGDSGTQLIEKKKFWLNELIDEVVKESRIIEQNHVISSSR 347

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           + T       +   ++L      +    P  GK+ I+ +        S+   G      E
Sbjct: 348 NDTVRVCADYKMIKQMLRVFIDNSMKFTPEHGKIDINSEVQGKVVKISVSDTGIGIPKEE 407

Query: 163 KFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +             +       +   ++  +  E  +     ++  L+
Sbjct: 408 IQNIFNRFYIVDKSRSKEKGGTGLGLSIAKWIIDMHQGAIDVESQEGKGTKITVTLK 464


>gi|227878533|ref|ZP_03996467.1| phosphate regulon sensor histidine kinase [Lactobacillus crispatus
           JV-V01]
 gi|227861867|gb|EEJ69452.1| phosphate regulon sensor histidine kinase [Lactobacillus crispatus
           JV-V01]
          Length = 552

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     +   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKDEDRDGFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQGSAYRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVEKSYSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|223940722|ref|ZP_03632560.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223890613|gb|EEF57136.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1463

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----- 57
            +N       M+ +  L   I HD+ + +  I  S ELL+    + E+ ++I         
Sbjct: 1084 ENQFLRAQRMESIGTLAGGIAHDLNNVLAPILMSCELLEHELRDAEIREVISSIKTGAQR 1143

Query: 58   --MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                    L F R   G   ++     + +IEQ++ +      +V VS   E   +  + 
Sbjct: 1144 GADLVRQVLSFARGVEGRRLALQPRHLIREIEQIMGETFPKSIQVDVSPDPELWMVVGDP 1203

Query: 116  ---AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNL 157
                ++LLNL + A  ++P                   +      +    +  +   G  
Sbjct: 1204 TQLHQVLLNLCVNARDAMPAGGQLTLSAGNVLREENQLMAGLNSQATAYVVIRVADTGTG 1263

Query: 158  ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I D    +        +     + +   +   +               L 
Sbjct: 1264 I-PPELREKIFDPFFTTKEVGKGTGLGLSTTLAIIKSHDGFIHVSSEPGRGSTFEIYLP 1321


>gi|167634148|ref|ZP_02392470.1| putative sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167640071|ref|ZP_02398338.1| putative sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170689712|ref|ZP_02880887.1| putative sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170709460|ref|ZP_02899864.1| putative sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|190567406|ref|ZP_03020320.1| putative sensor histidine kinase [Bacillus anthracis
           Tsiankovskii-I]
 gi|229600008|ref|YP_002864904.1| putative sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|254686670|ref|ZP_05150528.1| sensor histidine kinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724746|ref|ZP_05186529.1| sensor histidine kinase, putative [Bacillus anthracis str. A1055]
 gi|254736995|ref|ZP_05194700.1| sensor histidine kinase, putative [Bacillus anthracis str. Western
           North America USA6153]
 gi|254744176|ref|ZP_05201858.1| sensor histidine kinase, putative [Bacillus anthracis str. Kruger
           B]
 gi|254761866|ref|ZP_05213715.1| sensor histidine kinase, putative [Bacillus anthracis str.
           Australia 94]
 gi|167511882|gb|EDR87261.1| putative sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167530462|gb|EDR93177.1| putative sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170125627|gb|EDS94550.1| putative sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170666326|gb|EDT17114.1| putative sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|190561533|gb|EDV15504.1| putative sensor histidine kinase [Bacillus anthracis
           Tsiankovskii-I]
 gi|229264416|gb|ACQ46053.1| putative sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 337

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 95  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 154

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L D    I       + +   
Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 274

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E I          + K
Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 331


>gi|154504470|ref|ZP_02041208.1| hypothetical protein RUMGNA_01974 [Ruminococcus gnavus ATCC 29149]
 gi|153795245|gb|EDN77665.1| hypothetical protein RUMGNA_01974 [Ruminococcus gnavus ATCC 29149]
          Length = 528

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----------------I 45
            +       +  L A L   I HD+ +P+ +I  S  +L                     
Sbjct: 287 REEALAQAKNEQLRANLLRSISHDLRTPLTSISGSAGILLNSASALGEEKQKQLYKGIYD 346

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   +  +  + +S                 VD +I         +      K +     
Sbjct: 347 DSMWLINLVENLLSVTRLEDGTMNLNLQIELVDEVIEGALKHISRDHSDYELKFIHSEEL 406

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 SR   ++++N+   A    P+G K+ I  +        S+  NG          
Sbjct: 407 LLAKMDSRLIIQVIINIVDNALKYTPKGSKIEIYARKENQMIAISIADNGKGI-ADCAKE 465

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +            +  +    +   +   +       H  + +  L+
Sbjct: 466 KIFDMFYTADSKVADSRRGLGLGLFLCKSIIQAHGGTIQVADNVPHGTIFTFTLQ 520


>gi|167646307|ref|YP_001683970.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
 gi|167348737|gb|ABZ71472.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           sp. K31]
          Length = 509

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45
           + +     +    L A+  + S + H+I  P+ A+ N LE + +                
Sbjct: 267 LKELQAELVHVSRLSAMGTMASTLAHEINQPLTAVANYLETIRDLLIGDAEIDRSLLREA 326

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101
             E       +         F+          D    + +   +      +         
Sbjct: 327 VGEAASETLRAGFIVRRLRDFVARGDVDKSIEDLPRLIEEAGNLALVGARERGVRSFFRF 386

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ---DSKNENIFSLKINGNLA 158
                  +    +  ++L+NL   A  ++       ++V            S++  G   
Sbjct: 387 DLEATPALVDRVQIQQVLVNLMRNAVEAMAESEVRELTVSTLLRPDGAIEVSVEDTGPGI 446

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E   ++    V S  +   +       +   +  R+L + +          L
Sbjct: 447 -SDEIAPRLFQAFVSSKAEGMGLGLSICRTIIEAHGGRILADALPGGGTAFRFTL 500


>gi|313200853|ref|YP_004039511.1| osmosensitive k channel his kinase sensor [Methylovorus sp. MP688]
 gi|312440169|gb|ADQ84275.1| Osmosensitive K channel His kinase sensor [Methylovorus sp. MP688]
          Length = 906

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLS 56
           A++   ++ S  L   L S I HD+ +P+ ++    + L +              +   +
Sbjct: 662 ARDALISMESERLRNSLLSAISHDLRTPLTSLLGIADQLRQAPDMPSDRHAQLETMYDQA 721

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEKID 110
                + +  + +A    GSV        +E+V          ++   R++V+   E   
Sbjct: 722 FRMQQLVVNLLDMARLQAGSVQLNSQWQVLEEVLGSALRAMQPVSQQHRIEVTLPPELPL 781

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING---NLARFPEKF 164
           L  +     ++  NL   A    P    + IS Q    E   ++   G         + F
Sbjct: 782 LQFDAVLLERVFCNLLDNACKYSPPNTTIRISAQQHPGEVWVTVADEGWGLPAGMETQIF 841

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G VES      +       +   +   L  E    H       L 
Sbjct: 842 QKFTRGKVESPQPGVGLGLSICKAIIQAHGGALWAEAQQPHGTRFIFSLP 891


>gi|298241825|ref|ZP_06965632.1| signal transduction histidine kinase with CheB and CheR activity
            [Ktedonobacter racemifer DSM 44963]
 gi|297554879|gb|EFH88743.1| signal transduction histidine kinase with CheB and CheR activity
            [Ktedonobacter racemifer DSM 44963]
          Length = 1103

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 60/214 (28%), Gaps = 21/214 (9%)

Query: 21   RICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFM------- 67
             + H++ +P+ +    ++LL               ++ +  S       +  +       
Sbjct: 888  MVSHELKTPLTSAKGFVQLLQRRLSKAGDEHMAPELEQVDRSLEKLSRLISSLLDANALE 947

Query: 68   -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
              +   +         + ++ +  +        ++ +             ++L NL   A
Sbjct: 948  TGMLSIHASVFAVDDLVREMVKEQKQLWPHRLFLESTIQIRAYADRERSGQVLQNLLSNA 1007

Query: 127  HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID------SHD 180
                P    V +SV    +    S++  G      ++  +I +  V              
Sbjct: 1008 LKYSPVADPVWVSVSVDDDMIRLSVQNRGKGI-PQDQHARIFERFVRGAQPEQNTVKGMG 1066

Query: 181  IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  Y    +  +   R+  E   +  V     L 
Sbjct: 1067 LGLYIAAQIVTQQGGRIWVESTLNEGVTFFFTLP 1100


>gi|162448993|ref|YP_001611360.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159575|emb|CAN90880.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 636

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 67/240 (27%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----------GIED 47
           A+ +   L  S  L A+  L + + H+I +P+  +  +LELL                  
Sbjct: 245 AEELRSRLERSERLAAVGQLAAGVAHEINNPLAYVVANLELLAREVRRLADKGVATEHLA 304

Query: 48  EVMQLIRLSSMSAIIRLKFMRLA-----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           + +   R  +   +  +  + +          G  D    +     ++   +    RV  
Sbjct: 305 QPLADARHGAARVVDIVGDLGVFARAEANEAIGPTDVNAVIESALNIVHPQMKHRARVVR 364

Query: 103 SWTGEKIDL--SRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGN 156
                           ++ +NL + A  S+  G           +D   E +  +  +G 
Sbjct: 365 ELASVAPVSGAEGRLTQVFVNLLINAAQSIREGRVADNVVEVRTRDQGREVVAEIVDSGC 424

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   ++ +    +    +   +       +       +           +   L 
Sbjct: 425 GV-PEEHMHRLFEPFFTTKRAGEGTGLGLAICRNIVESCGGTIGVSSEAGVGTCVRVRLP 483


>gi|327441258|dbj|BAK17623.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 525

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 68/224 (30%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLI 53
           +N+      + LV  L + + H+I +P+  I   +++++E                 + I
Sbjct: 299 ENLILQSEKLKLVGELAAGVAHEIRNPMTVISGYVQMMNEDPNSPYYEYTKLIQNETERI 358

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLS 112
            L     ++  K     +      ++L  +    Q      A+   +   +     +   
Sbjct: 359 ELILSEFLVLSKPQANQYAPINLAEALSEVVQFLQYEFQSKAISLNIINEFLNITILGNK 418

Query: 113 RERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +  ++ +NLF  A  ++       + +       E    +   G     P    +I + 
Sbjct: 419 NQLKQVFINLFKNAIEAINEDGSITLQVCKSKDGKEIYIQMIDTGCGI-PPHVLERIFEP 477

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    +  +  +++  +  +        +     
Sbjct: 478 FYTTKTKGTGLGMMIINKIVQDHQGSIQIKSKQHVGTEILLTFP 521


>gi|312142591|ref|YP_003994037.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
 gi|311903242|gb|ADQ13683.1| PAS/PAC sensor hybrid histidine kinase [Halanaerobium sp.
            'sapolanicus']
          Length = 1186

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 58/241 (24%), Gaps = 30/241 (12%)

Query: 1    MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            M K     + +     L +   + + H+I +P+  I    ELL +   ED   + I+   
Sbjct: 797  MDKANKMAVKAEKANELKSQFLANMSHEIRTPLNIIMGYTELLAKDLEEDNYKRYIKSIR 856

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------------- 103
             +    L  +      +     +I +      +   +     +                 
Sbjct: 857  SAGDSLLDQVNDILDMSKIEAGIIEINYEYIDLAALLENITAIFADKVKAKGLDFQLKMD 916

Query: 104  -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-------DSKNENIFSLKING 155
                          +I++NL   A      G               ++  +    ++  G
Sbjct: 917  NLPPLVKMDEFRFRQIMINLLDNAVKFTKSGHIFIGVYCRPVSGKGNNNIKLRIIVQDTG 976

Query: 156  NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               +  ++       +              +       L      ++  +       V  
Sbjct: 977  IGIKAEKQEEIFKAFSQENAESTREFGGTGLGLSITRRLVDMMDGQISLQSTAGKGSVFK 1036

Query: 211  A 211
             
Sbjct: 1037 I 1037


>gi|296125344|ref|YP_003632596.1| PAS/PAC sensor signal transduction histidine kinase [Brachyspira
           murdochii DSM 12563]
 gi|296017160|gb|ADG70397.1| PAS/PAC sensor signal transduction histidine kinase [Brachyspira
           murdochii DSM 12563]
          Length = 393

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 74/235 (31%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQ 51
           ++      +  L +L  L + + H+I +P+G+I   ++L+D         +     +  +
Sbjct: 143 ESAQKLKRAEQLASLTTLAAGVAHEIKNPLGSISIYVQLIDKIIKKNMDNDCQCYKDFKE 202

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVS 103
              +           +         ++  I         L  +  +  +    +  + + 
Sbjct: 203 YSDIIKEEIGRLEDTINSFLFSVRKLELNIEDVNINALILSTVSFLKYEIEKNNVSIDIK 262

Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLAR 159
           +  + + L  +     + L+N+   A  ++    K      +   N  + S+K  G   +
Sbjct: 263 FDKDNLILKLDERYIKQALINIIQNAIDAMNDNKKEIYIKLKTIDNYAVISIKDTGIGIK 322

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +I +    +      +    V+ +   +   +  E        +   L 
Sbjct: 323 EEDLN-KIFEPYFTTKRHGTGLGLTNVVRIIEAHNGNITIESEYGKGSEVIIKLP 376


>gi|224538850|ref|ZP_03679389.1| hypothetical protein BACCELL_03746 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519525|gb|EEF88630.1| hypothetical protein BACCELL_03746 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 473

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 64/232 (27%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           + +     + + +L     + + H+I +P+ AI     LL  ++   ++E    I   + 
Sbjct: 231 LMRAKDLAIEA-ELKQSFLANMSHEIRTPLNAIVGFSNLLVSEDDLPDEEKADFINTINT 289

Query: 59  SAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +  +                  M  ++      + +  +     ++        +     
Sbjct: 290 NCELLLKLINDILELSRIESGNMTFSYSTCNLNNWVDSMYLTHSLLIPKEIEFIKEVPDA 349

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                      ++I+ N    A         K+   +  S  E    ++  G      E+
Sbjct: 350 AFFINTDVNRLSQIMTNFLNNATKFTKSGYIKLGYEIDFSTYEVSIYVEDTGKGIPKEEQ 409

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +        +     +++A +   ++            + LL 
Sbjct: 410 RMIFERFYKQDEFVQGTGLGLSISMVIAEKLGGKISVASEIGKGSRFTFLLP 461


>gi|220913623|ref|YP_002488932.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219860501|gb|ACL40843.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 553

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 61/228 (26%), Gaps = 17/228 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAII 62
           ++   + ++       + + H++ +P+ +I   L +  +    D  ++    ++  +A  
Sbjct: 313 DVTALVEALSAKDQFVASVSHELRTPLTSILGYLSIAMDEEGLDPELEHCLEVAKRNAER 372

Query: 63  RLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            L             + +        +      D  Q       V   ++          
Sbjct: 373 LLNLVADLLTIASGTLTVRPRQADLAEVAAQSVDAAQPRAASGGVTLSLETEGPAPGRFD 432

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                + + NL   A    PRGG VT+ V+      +  +   G      +         
Sbjct: 433 PDRLGQAIDNLVSNAIKYTPRGGVVTVRVRTEDGRLVCEVADTGVGMTDQDLANAFTRFF 492

Query: 172 -----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S I    +       +   ++  +            +  L 
Sbjct: 493 RTATAHSSAIPGAGLGLAITRSIIENHRGSVTLASSHGEGTTATLTLP 540


>gi|254524346|ref|ZP_05136401.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219721937|gb|EED40462.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1167

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 58/243 (23%), Gaps = 30/243 (12%)

Query: 2    AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
             +     +   +L        +   + + H++ +P+  +    ELL    ++        
Sbjct: 780  RQQWQLTVHKQELAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPLDPVQRSYAG 839

Query: 55   LSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +                             D    L  ++ +++      +     
Sbjct: 840  SIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQVLMQPMAKQRRLEFQR 899

Query: 104  WTGEKID-----LSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNL 157
                +             +ILLNL   A     R    + + ++D+     F +  +G  
Sbjct: 900  GNDPQGPISVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLEDNGGGVCFEVYDSGPG 959

Query: 158  ARF------PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                       +F Q       S      +       LA     R+  E           
Sbjct: 960  INAEQQERLFHRFEQADGPRTASRYGGSGLGLAICQELAVAMGGRIDVESSPGKGARFRV 1019

Query: 212  LLE 214
             L 
Sbjct: 1020 RLP 1022


>gi|197124740|ref|YP_002136691.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196174589|gb|ACG75562.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 646

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------------GI 45
           +       L +  L AL  L + + H++ +P+ AI   L +L                  
Sbjct: 408 LKTAQDQILRTRRLAALGSLGAGLAHELNNPMTAIVGYLAILKRELPPGSAHAEMIGRAQ 467

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           E        +  + +    +       ++        L   E  +               
Sbjct: 468 EQTARVARVVEDLRSFADQERSMQGRRFSLVAPVRAALALYEDRLRAAGIELTTRFDERL 527

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF 164
            +      +  +++ +L   A  ++PRGG + +S            +   G         
Sbjct: 528 PDAQGDPVQIQQVVAHLVENAINAMPRGGSLEVSLGTVDGEALRLRIADTGKGIPVT-IR 586

Query: 165 TQIVDGNVEST-IDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   +  R++ E  +     ++ LL 
Sbjct: 587 ERIFDPFFTTKEHPGRVGLGLSVSHSIVEAHHGRIVVESEEGAGAAITVLLP 638


>gi|167644599|ref|YP_001682262.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
 gi|167347029|gb|ABZ69764.1| multi-sensor signal transduction histidine kinase [Caulobacter sp.
           K31]
          Length = 501

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 64/236 (27%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEV----- 49
           +       +    L A+  + S + H++  P+ AI N L     LLD    ED+      
Sbjct: 252 LRDLQTELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLLDRGRPEDQAKVRDA 311

Query: 50  --------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                   ++   +         +        + S               + +   +   
Sbjct: 312 VDKASAQALRAGDVIHRMREFVRRGATERAPESLSKVVEDAAALALIGAREHLVQTRLQL 371

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLA 158
                       +  ++L+NL   A  ++    +  +++            S+   G+  
Sbjct: 372 DPAADAVYADRVQIQQVLVNLIRNAVDAMADSPRRELTIASQRLANGSVQVSVTDTGSGI 431

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   ++    + +  +   +       +   +  ++  +       V    L 
Sbjct: 432 -SDDFRERLFQPFMTTKAEGMGVGLSISRSIVEAHGGKIWADANPTGGTVFHFTLP 486


>gi|16801788|ref|NP_472056.1| hypothetical protein lin2727 [Listeria innocua Clip11262]
 gi|16415263|emb|CAC97953.1| lin2727 [Listeria innocua Clip11262]
          Length = 459

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 62/233 (26%), Gaps = 22/233 (9%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++  +           
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQKEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVQLAEQWRQLIQMTEWSWREKELTINLELADINY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++  NL   A    P GG + + + +        +  +G      E   +I 
Sbjct: 347 SGDAELLYQVWSNLLNNAIKYTPLGGNIQVRLYEETTNVFVEVWNSGAGI-SKEDMAKIF 405

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D              S  +       +   +   +  E   D        L K
Sbjct: 406 DRFYKASQSRTREEGSSGLGLSICKKIITLHHGEITVESNTDKGTTFKVKLPK 458


>gi|319900106|ref|YP_004159834.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
 gi|319415137|gb|ADV42248.1| PAS/PAC sensor signal transduction histidine kinase [Bacteroides
           helcogenes P 36-108]
          Length = 479

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 62/216 (28%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           S I H++ +P+ AI  SL+LL++          E     +   ++    I  + + +   
Sbjct: 263 STISHELKTPVSAILMSLQLLEDRRVGTLNDEQEQLSRSIRDNANRLLGITAELLNMTQV 322

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE------------RAKILL 120
             G +  +  +    ++IE  I  ++     +         +             A +L 
Sbjct: 323 EAGKLQMMPKITKPIELIEYAIKANQVQADRFNIHIEVEYPDGKIPKLFVDSEKIAWVLT 382

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--VESTIDS 178
           NL   A       G+V I V    +     ++  G         +          + +  
Sbjct: 383 NLLSNAIRYSKENGRVIIGVSHEDDFIEMYVQDFGKGIDPRYHQSIFDRYFRVPGTKVQG 442

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   L  +            L+
Sbjct: 443 SGLGLSISKDFVEAHGGTLTVQSEPGKGSRFMLRLK 478


>gi|303242270|ref|ZP_07328757.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302590180|gb|EFL59941.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 492

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 73/239 (30%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +   +   L   +      + I HD+ +P+ +I   ++ L +            M +I  
Sbjct: 242 LKSALEQQLKYDEERNEFIASISHDLKTPLTSIKGHIDGLKDGVADTPEKTARYMDIIYK 301

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103
             +     +  +      T             ++  + +  + ++++             
Sbjct: 302 KVIDMDRLINDLTFYSNQTLKKVPFNFSKVNLKIFIEDMIDEYQIELDKLGITITSCYNL 361

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP 161
                    S +  +++ N+F  +   +     ++ I VQD +++ +  +  NG   +  
Sbjct: 362 SGDTLVKADSEKLKRVIANIFENSIKYMNNENSQIKIDVQDRQDKVLIGIHDNGEGIKKE 421

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                F +    +           +       +  E+  R+  E    +   +   LEK
Sbjct: 422 HLPNIFNRFYRADPSRNTTKGGSGLGLAIASQIIEEHGGRIWAESEFGNGTSIYFQLEK 480


>gi|300313022|ref|YP_003777114.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300075807|gb|ADJ65206.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 556

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++    L +    +   S + H+  +P+  +    + L E   E  + Q       S 
Sbjct: 317 LVRSRREALQANQAKSRFLSNMSHEFRTPLNGVLGYSDALREELGESPLAQYAVAIHDSG 376

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLG----------------DIEQVIEDFIAVDKRVQVSW 104
              L  +      T   D  + +                    Q     + ++ R+    
Sbjct: 377 NRLLDLVNAILEVTELEDRRVAVHLDPANIRELVGQAIARHYPQAQAKGLPLECRIGEDV 436

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161
               +   R+  ++L NL   A      G  +    +    +    +K  G      +  
Sbjct: 437 PQILVCDERKIQRVLDNLISNAVRYTDHGRVMVEVERSGPQQLTMRIKDTGIGIAASQQN 496

Query: 162 EKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + F +    +     + +   +       L      +L+ +         S  L 
Sbjct: 497 DIFEKFTQADDSPRRSQEGAGLGLTIAQRLVMLMGGQLVLQSEQHQGSTFSFTLP 551


>gi|282858517|ref|ZP_06267689.1| sensor histidine kinase/response regulator [Prevotella bivia
           JCVIHMP010]
 gi|282588702|gb|EFB93835.1| sensor histidine kinase/response regulator [Prevotella bivia
           JCVIHMP010]
          Length = 565

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKF----MRLAFG 72
           S I H++ +PI AI  SL+LL++     + DE  +L +    ++   LK     +++   
Sbjct: 348 SVISHELKTPISAILMSLQLLEDKRIGTLSDEQQELAKSIGDNSDRLLKITGELLKMTQV 407

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------------ERAKILL 120
            +GS+     +    ++IE  I     +   +                     + A ++ 
Sbjct: 408 ESGSLQLSPKVTKPIELIEYAIKATHVLAERFECNIEVEYPTEKMPKLFVDSEKIAWVIT 467

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--VESTIDS 178
           NL   A    P+ G++ I  + ++N     ++  G         T          + +  
Sbjct: 468 NLLGNAIHYSPQHGRIIIGARQTENRIEIYVRDFGKGIDPRYHDTIFERYFRVPGTKVQG 527

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +           +   +  E            L
Sbjct: 528 SGLGLAISKDFVEAHGGNIRVESEIGKGSCFIVTL 562


>gi|229057029|ref|ZP_04196423.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603]
 gi|228720306|gb|EEL71882.1| hypothetical protein bcere0026_11450 [Bacillus cereus AH603]
          Length = 466

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 60/215 (27%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + +  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +      E        +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKLK 458


>gi|227082827|ref|YP_002811378.1| osmolarity sensor protein EnvZ [Vibrio cholerae M66-2]
 gi|227010715|gb|ACP06927.1| osmolarity sensor protein EnvZ [Vibrio cholerae M66-2]
          Length = 438

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +    +     +       + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETELQAGLAPALGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|94314241|ref|YP_587450.1| histidine kinase sensor [Cupriavidus metallidurans CH34]
 gi|93358093|gb|ABF12181.1| Histidine kinase, sensor, two components regulatory system (zniS)
           [Cupriavidus metallidurans CH34]
          Length = 529

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL----------------- 40
           A+ +   L++   +A L     S + H+  +P+  I    + L                 
Sbjct: 281 ARTLEITLANERRMAELQRNFVSMVSHEFRTPLTVIDGYAQRLSHIKPPLSLEAVQDRSS 340

Query: 41  --DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
                      +    L +   +                  +  + ++ +       + +
Sbjct: 341 RIRAAVRRMTALIEDMLGASQVLDLATPGAFQRTEFSLHLLVHEVCEMHRESSPDAQIVE 400

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +            +R   + + NL   A    P    V++ V       +  +   G   
Sbjct: 401 QWHADVPEVFHGDARLLFQAVSNLIGNAVKYSPPKTPVSVDVSMESGAILICVADQGIGI 460

Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    F + V G   +      +  Y V L A  +   +     +         L 
Sbjct: 461 PEKDLGHVFERYVRGANVTGTAGAGVGLYIVRLAAELHGGTVSVRSAEGTGSRFLLRLP 519


>gi|148253525|ref|YP_001238110.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
 gi|146405698|gb|ABQ34204.1| PAS/PAC sensor signal transduction histidine kinase [Bradyrhizobium
           sp. BTAi1]
          Length = 455

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/258 (9%), Positives = 71/258 (27%), Gaps = 44/258 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPI--------------GAIHNSLE------ 38
           + +     +    + +L  L + + H++ +PI               ++   L+      
Sbjct: 196 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFVYGNIHTLMRYRTSLVGYLDAVHEQP 255

Query: 39  ----------------LLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
                           +L++   + +  ++     S       +      G    V+   
Sbjct: 256 VADELAALRSDLRIDAILEDFGPLIEGTLEGAVRISEIVKNLRRLSFSKLGEVERVNIER 315

Query: 82  GLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-- 137
            +              VD +++V           +  ++++NL   A  ++    +    
Sbjct: 316 LINTAVLWAGRTKQHRVDIQIEVEPDVWISGNEGQLHQVIVNLVENAIDAMRSTEQPRLL 375

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIR 196
           ++     NE +F +  NG                    + +   +  +    +  E+   
Sbjct: 376 VAAGRQGNEIVFRIADNGPGIDQDHLSHIFEPFFTTKRVGEGTGLGLWISYGIVREHGGE 435

Query: 197 LLPEIIDDHNVVLSALLE 214
           L+     +     S  L 
Sbjct: 436 LIASNASEGGATFSFALP 453


>gi|327396224|dbj|BAK13646.1| aerobic respiration control sensor protein ArcB [Pantoea ananatis
           AJ13355]
          Length = 778

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 26/231 (11%)

Query: 10  SSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
            +++  +       S I H++ +P+  I     +L +  +  E ++ ++   +SAI    
Sbjct: 274 DALESASREKTTFISTISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGN 333

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKI 109
                          + L +       F+                      Q+    +  
Sbjct: 334 IFNDVIEVDKIERRKVQLDNQPVDFTSFLADLENLSGLLAQPKGLKFVMAPQLPLPHKIS 393

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +IL NL   A     +G  V     +      F ++ +G   R  E+      
Sbjct: 394 TDGTRLRQILWNLIGNAVKFTQQGEIVVRVAYEQDETLRFEVQDSGQGIRQEEQDKIFAM 453

Query: 170 GNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +            I       LA      +            + +++
Sbjct: 454 YYQVTDQHGGKPATGTGIGLAVSRRLAQAMGGDISVNSAPGQGSCFTVVIK 504


>gi|291615972|ref|YP_003518714.1| ArcB [Pantoea ananatis LMG 20103]
 gi|291151002|gb|ADD75586.1| ArcB [Pantoea ananatis LMG 20103]
          Length = 787

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 61/231 (26%), Gaps = 26/231 (11%)

Query: 10  SSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
            +++  +       S I H++ +P+  I     +L +  +  E ++ ++   +SAI    
Sbjct: 283 DALESASREKTTFISTISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGN 342

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKI 109
                          + L +       F+                      Q+    +  
Sbjct: 343 IFNDVIEVDKIERRKVQLDNQPVDFTSFLADLENLSGLLAQPKGLKFVMAPQLPLPHKIS 402

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +IL NL   A     +G  V     +      F ++ +G   R  E+      
Sbjct: 403 TDGTRLRQILWNLIGNAVKFTQQGEIVVRVAYEQDETLRFEVQDSGQGIRQEEQDKIFAM 462

Query: 170 GNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +            I       LA      +            + +++
Sbjct: 463 YYQVTDQHGGKPATGTGIGLAVSRRLAQAMGGDISVNSAPGQGSCFTVVIK 513


>gi|302865950|ref|YP_003834587.1| stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
 gi|302568809|gb|ADL45011.1| Stage II sporulation protein E [Micromonospora aurantiaca ATCC
           27029]
          Length = 1227

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT---- 74
           + + H+  +P+  +     E+L +  + +  +  + +   + +  LK +     ++    
Sbjct: 354 ANVSHEFRTPLTLVLGPMEEMLADRELPERYLDRLTVMHRNGLRLLKLVNTVLDFSRLES 413

Query: 75  -------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                     D       +               V                  KI+LNL 
Sbjct: 414 GRLAARYQPTDLSDYTSRLASTFRSATERAGLRLVVDCPPLPAPVYVDRDMWEKIVLNLL 473

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178
             A      G        D        +   G      E    F +     G    T + 
Sbjct: 474 SNAVKFTFDGEIRVRVRADDGAAV-LEVTDTGVGIAPEELPQVFERFHRVAGARSRTHEG 532

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I    V  L   +   +    + D     +  + 
Sbjct: 533 TGIGLALVRELVEMHGGTVTAHSVVDRGTTFTVTMP 568


>gi|229592506|ref|YP_002874625.1| putative phytochrome/sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229364372|emb|CAY52146.1| putative phytochrome/sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
          Length = 747

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 68/237 (28%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           +A+ +     ++     L + + HD+ +P+  I     ++      +       +     
Sbjct: 504 LARQVQREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKAFSSDGPHTSRRISSAID 563

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------V 100
           +   A  R+  +      T  +++   +     +    +  +                  
Sbjct: 564 TMQQAAARMNVLLEDLLDTSKIEAGRYVVKPVALDVSQMFEEAYSLLAPLAMEKGIDLSF 623

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                 +         ++L NL   A    PR G + IS   +  E +FS++ +G     
Sbjct: 624 NAEPGLQINGDPERLFQVLSNLIGNAIKFTPRQGNIGISAMSNGEEIVFSVRDSGEGIAP 683

Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +          ++        +  Y    +   +  +++ E            + +
Sbjct: 684 EQLPHVFDRYWTQTENNPTGSGLGLYITQGIVQAHGGKIVAESEVGRGSEFRFTVPR 740


>gi|229524691|ref|ZP_04414096.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae bv.
           albensis VL426]
 gi|229338272|gb|EEO03289.1| osmolarity sensory histidine kinase EnvZ [Vibrio cholerae bv.
           albensis VL426]
          Length = 438

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 7/213 (3%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLK 65
           + +++   ALL + I HDI +P+  I  + E++  ++  + + ++      +      + 
Sbjct: 220 IQALEEDRALLMAGISHDIRTPLTRIRLATEMMSPEDSYLAESIISDTEECNQIISQFMD 279

Query: 66  FMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
           +++         VD      D+      +    +    +     +       + L NL +
Sbjct: 280 YLKPVNREAFEAVDLNDIASDVASSEGGYEVQIETDLQAGLAPALGNPIAIKRSLSNLVV 339

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        KV+  +   K     S++ NG      +    F     G+     +   +
Sbjct: 340 NALRYGNGWVKVSSGMTADKKLVWLSVEDNGPGIDPSQVNKVFEPFTRGDTARGSEGTGL 399

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +         +       
Sbjct: 400 GLAIVKRIVSQHHGAVSVSNRSQGGLRAQISFP 432


>gi|218264827|ref|ZP_03478515.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221769|gb|EEC94419.1| hypothetical protein PRABACTJOHN_04225 [Parabacteroides johnsonii
           DSM 18315]
          Length = 794

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 64/230 (27%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + K       S  L +   + + H+I +P+ AI     LL   +     DE + +I  ++
Sbjct: 412 LRKAKDKAEESDRLKSAFLANMSHEIRTPLNAIVGFSNLLTIAENEEERDEYINIISSNN 471

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              +  +  +                 +D    L DIEQ          +V         
Sbjct: 472 ELLLQLINDILDVAKIEAGTLEFIDSEIDINALLSDIEQSSRLKAPEGVQVSFVEKLPYC 531

Query: 110 DLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +  ++    +++ N    A      G               F +K  G     PEK   
Sbjct: 532 IIMSDKNRLAQVMTNFINNAIKFTKEGSIRFGYEHKDDKLL-FYVKDTGCGI-EPEKKDL 589

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +  V   S      +      ++  +    +  E            L 
Sbjct: 590 VFNRFVKLNSFAQGTGLGLAICQMIIKKLGGEIGVESELGTGSTFWFTLP 639


>gi|196036933|ref|ZP_03104315.1| putative sensor histidine kinase [Bacillus cereus W]
 gi|218901476|ref|YP_002449310.1| putative sensor histidine kinase [Bacillus cereus AH820]
 gi|195990456|gb|EDX54442.1| putative sensor histidine kinase [Bacillus cereus W]
 gi|218535839|gb|ACK88237.1| putative sensor histidine kinase [Bacillus cereus AH820]
          Length = 337

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 95  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 154

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L D    I       + +   
Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREVLIDFLPEISKHNIKLQVLMPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 215 STCPIIADHLSLMRIIGNLMKNAIYYGKDGKTIGVELLETDAAYELLIWDKGPGIPKHDL 274

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E I          + K
Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESIPWERTTFGFSIPK 331


>gi|163939207|ref|YP_001644091.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163861404|gb|ABY42463.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 466

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 60/215 (27%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + +  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLNTYELQFVEKNLRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDREHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +      E        +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGEWRIESEKGKGTTVSIKLK 458


>gi|242237781|ref|YP_002985962.1| osmolarity sensor protein [Dickeya dadantii Ech703]
 gi|242129838|gb|ACS84140.1| histidine kinase [Dickeya dadantii Ech703]
          Length = 452

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 58/205 (28%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ +      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSKEDDYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +  V                    +  LNL + A      
Sbjct: 295 QMEVADLNSILGEVVAAESGYERVIDSQFADGELTVRISPLSIKRAALNLVVNATRYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             +V+   +       F ++ +G           F   V G+   +     +    V  +
Sbjct: 355 WIRVSSGRELQ--RAWFQVEDDGPGIDPLQLKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDAHNGSLDIGTSERGGLRIRAYLP 437


>gi|218245357|ref|YP_002370728.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|218165835|gb|ACK64572.1| histidine kinase [Cyanothece sp. PCC 8801]
          Length = 364

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 62/214 (28%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           L S + H++ +P+  +   LE L +       E+   +   +      ++ ++       
Sbjct: 148 LVSDMTHELRTPLTVVRGYLEELADNSIEPSPELYLKLVKETRRLERLIQDLQELSKAEA 207

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
              +          I +  +E+  +  +     +++ +      +  +  +I   L  + 
Sbjct: 208 GYLSITLRPINLIPILIALLEKFSDQILDEGPLLKLDYPKSLPPVLADSDRIEQILVNLI 267

Query: 127 HASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSH 179
             ++      TI++     ++    S+   G   +  +    F +    +   +      
Sbjct: 268 GNAIRYTETGTITIKAWRDRHRVFISVIDTGIGIKPEDLPFVFERFWRADKSRSRYSGGT 327

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            I       L       +            +  L
Sbjct: 328 GIGLAITRRLVELQGGNIEVSSQLGKGSTFTFYL 361


>gi|257058393|ref|YP_003136281.1| histidine kinase [Cyanothece sp. PCC 8802]
 gi|256588559|gb|ACU99445.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 364

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 62/214 (28%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           L S + H++ +P+  +   LE L +       E+   +   +      ++ ++       
Sbjct: 148 LVSDMTHELRTPLTVVRGYLEELADNSIEPSPELYLKLVKETRRLERLIQDLQELSKAEA 207

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
              +          I +  +E+  +  +     +++ +      +  +  +I   L  + 
Sbjct: 208 GYLSITLRPINLIPILIALLEKFSDQILDEGPLLKLDYPKSLPPVLADSDRIEQILVNLI 267

Query: 127 HASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSH 179
             ++      TI++     ++    S+   G   +  +    F +    +   +      
Sbjct: 268 GNAIRYTETGTITIKAWRDRHRVFISVIDTGIGIKPEDLPFVFERFWRADKSRSRYSGGT 327

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            I       L       +            +  L
Sbjct: 328 GIGLAITRRLVELQGGNIEVSSQLGKGSTFTFYL 361


>gi|188584718|ref|YP_001916263.1| PAS/PAC sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179349405|gb|ACB83675.1| PAS/PAC sensor signal transduction histidine kinase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 427

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 59/235 (25%), Gaps = 31/235 (13%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIR 63
            +  L     + +   H+I +P+  I   L+LL+   +      E +  I          
Sbjct: 165 QAEKLAIVGEMAAGTAHEIKNPLATIKGFLQLLESNELPESKRKEYLATITDEVNRMEQL 224

Query: 64  LKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
           +K        +   +           +     +       +K+V ++       +     
Sbjct: 225 VKEFLHLSKPSNQEEHETNETVSLCKVFQKTLIFFSPQFKNKKVMLNIKCPGHPIYLRGK 284

Query: 116 ----AKILLNLFMVAHASLPRGGKVT------------ISVQDSKNENIFSLKINGNLAR 159
                ++ +NL   +  ++ +  +               +  D   + I      G    
Sbjct: 285 SDKLQQVFINLIKNSLEAMEKIPQDCRKLTIKVDIYKSNNKDDKNEKVILEFIDTGPGIP 344

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 ++      + +    +     I +       L+ E            L 
Sbjct: 345 KN-IMNKLFSPFATTKVRGTGLGLPVSIQIIQNLGGYLVAENSPLRGACFRIELP 398


>gi|171915305|ref|ZP_02930775.1| sensory transduction histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 621

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 63/235 (26%), Gaps = 29/235 (12%)

Query: 9   LSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           L++ ++ A   SR        + H++ +P+ A+   ++LL +  ++    + ++ +    
Sbjct: 254 LTTAEMAAQASSRAKSDFLATMSHELRTPMNAVLGMIQLLQKANLKPVEHEYLKTAYEVG 313

Query: 61  IIRLKFMRLAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----- 107
              +  +     ++           D +     +E V        +  ++  T       
Sbjct: 314 DRLMTMINDILDFSQIDVGTIALVRDRVDLPALLEDVTASVRDEARLRKLDLTAHIAPGC 373

Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    ++L ++   A      G     +      E  F ++  G       + 
Sbjct: 374 PTLFWGDNTRLRQLLRHVVGNAVKFTDSGYVRITAKVVLPGEIQFKIEDTGVGIGKENQE 433

Query: 165 TQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                +       L    K R+  E            L 
Sbjct: 434 ALFDAFYQSDSSIRRRHGGTGLGLAISKRLCDAMKGRIWFESEVGRGTTFHIALP 488


>gi|167751596|ref|ZP_02423723.1| hypothetical protein EUBSIR_02597 [Eubacterium siraeum DSM 15702]
 gi|167655404|gb|EDR99533.1| hypothetical protein EUBSIR_02597 [Eubacterium siraeum DSM 15702]
          Length = 900

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +       +  L A L   I HD+ +P+ +I  +   L       DE         +  
Sbjct: 659 KEEAAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLISNGNSFDEATKNQLYTDIYD 718

Query: 55  LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            S                 +           VD +I         +              
Sbjct: 719 DSMWLINLVENLLSVTRIEEGRLNLHITEDLVDDVITEALHHVNRKSVEHHITVRHKEDY 778

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++++N+   A    P+G  + I      ++ + S+  +G+     E   
Sbjct: 779 LLAKMDAKLMVQVVINIVDNAIKYTPKGSNILIKTWKQGDKAVISIADDGDGI-PDEMKE 837

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D           +  S  +       + + +  ++       H  V +  L 
Sbjct: 838 RVFDMFYSGANKIADSRRSLGLGLSLCRSIVNAHAGKITVSDNTPHGTVFTITLP 892


>gi|301311598|ref|ZP_07217525.1| two-component sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300830684|gb|EFK61327.1| two-component sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 572

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 20/213 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           S I H++ +PI AI  SLELL++          E     +   S+    I  + ++++  
Sbjct: 357 STISHELKTPISAIMMSLELLEDNRIGKLNTEQESLSKNIKENSNRLLEITGELLKMSQV 416

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124
            +G +     +    ++I+  I  +         +++V +  +   L  +  KI   +  
Sbjct: 417 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKITKLFVDSEKIAWVVTN 476

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179
               A       G++ I  +         +K  G     R+ E           + +   
Sbjct: 477 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 536

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +           +   +  E            
Sbjct: 537 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 569


>gi|225174253|ref|ZP_03728252.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170038|gb|EEG78833.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 455

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------M 50
           +A+ +    S ++    L   L   I H++ +P+  I + LE   +  ++ +       +
Sbjct: 216 LAETMNRMASRLEDQSNLRKKLTGDISHELRTPLTTIQSYLEAFLDGVMKPDKQNITAVL 275

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105
                 +       +     +       + + L         +V       D R+ V+  
Sbjct: 276 DESHRLNSLVNDLQELSNAEYRGKNVNLTEMDLNSFVAREAERVRPAMRQKDIRLSVTPH 335

Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
            ++  +  +     ++L N+ + A     +GG+VT++V D+      ++   G       
Sbjct: 336 EKEAVVLADETLLGRVLGNILINAQKYTQQGGQVTVTVFDAGRRAGVAVTDTGEGISKEH 395

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +    +     +     I    V  L       +  E            L+K
Sbjct: 396 LPHIFERFYRADASRTRSTGGSGIGLAIVRELLELMDGEVDVESQPGKGSTFRIFLQK 453


>gi|153007303|ref|YP_001381628.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030876|gb|ABS28644.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 464

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 58/242 (23%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQL 52
            KN     S   L  L        + + H++ +P+ ++    E++ E     +  E  + 
Sbjct: 201 EKNRELEDSYAKLKELDRLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREY 260

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQ 101
           + +        L+ +      +             VD+   + D    +           
Sbjct: 261 LGIIMEKGENLLQLITSILDISKIEAGRVRLVLSDVDATQIMRDAIATVLPLARKKGLKV 320

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNL 157
               G    +  +R K+   L  +   ++                  +     +   G  
Sbjct: 321 ACDAGAMPRVQADRDKLRQCLVNLCSNAVKFTPAGGTIAVSAEALPGDRLAIHVADTGIG 380

Query: 158 ARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                           DG+         +    V      +   +    I       + +
Sbjct: 381 IGEEHLGKVFDVFYQVDGSSTREYGGAGLGLAIVKSFVEAHGGEVGVRSIPGVGTTFTVI 440

Query: 213 LE 214
           L 
Sbjct: 441 LP 442


>gi|288942691|ref|YP_003444931.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Allochromatium vinosum DSM 180]
 gi|288898063|gb|ADC63899.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Allochromatium vinosum DSM 180]
          Length = 359

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +            ALL   + H+I +P+G +  + +LL+    +  + +  R+    A 
Sbjct: 126 TREEQLLSQHQATQALL-RGLAHEIKNPLGGLRGAAQLLERELPDAALREYTRIIIDEAD 184

Query: 62  IRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                M    G         V+    L  +  +I        +V   +     D   ++ 
Sbjct: 185 RLQALMNRMIGPHRLPRRTPVNIHDVLEHVRTLILAESPRGPKVHRDYDPSIPDFIADQD 244

Query: 117 KILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +++  L  +A  +                  + TI  +  K      ++ NG+     E 
Sbjct: 245 RLIQALLNLARNAATAAGPHGCLQFKTRVLRQFTIGSRRHKLVLQVQVRDNGSGI-PDEI 303

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I    V    D   +       L +++   +  E       +    L 
Sbjct: 304 RDRIFYPMVSGRPDGTGLGLSIAQELINQHGGLIECESQPGD-TIFHVYLP 353


>gi|229042172|ref|ZP_04189927.1| hypothetical protein bcere0027_2450 [Bacillus cereus AH676]
 gi|228727169|gb|EEL78371.1| hypothetical protein bcere0027_2450 [Bacillus cereus AH676]
          Length = 314

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + +       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 72  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       +     
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQIRIPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++  E    +   G      + 
Sbjct: 192 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADTEYELHIWDQGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E            + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308


>gi|148654385|ref|YP_001274590.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148566495|gb|ABQ88640.1| integral membrane sensor hybrid histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 687

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 32/244 (13%)

Query: 1   MAKNICFNLS------SMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQ 51
           M +N+           +  + +   + + H++ +P+ +I N   ++       +  E + 
Sbjct: 175 MRENVRLATERAAAEHASQIKSEFLANMSHELRTPLNSIINFTRIISTGARGPVTPEQID 234

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------VDKRVQ 101
            +     S    L  +      +      + L      I D I            +K ++
Sbjct: 235 YLNRVRQSGEHLLGLINDILDLSKIEAGRMELFRESFQIGDLIQSVLATASGLVKEKPIE 294

Query: 102 VSWTGEKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           +                   ++LLNL   A      G     +   +       +   G 
Sbjct: 295 LRSEIAPHLPPVYADRTRVRQVLLNLLSNAAKFTDAGTITVHAEGCNGEIV-IHVSDTGI 353

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               PE   +I +             +   +       L   +  RL  E         S
Sbjct: 354 GI-APEHLEKIFEAFRQLDNASNRRYEGTGLGLAICRRLVDLHGGRLWVESAVGVGSTFS 412

Query: 211 ALLE 214
             L 
Sbjct: 413 FSLP 416


>gi|317489142|ref|ZP_07947666.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325833774|ref|ZP_08166150.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
 gi|316911762|gb|EFV33347.1| hsp90-like protein [Eggerthella sp. 1_3_56FAA]
 gi|325485216|gb|EGC87687.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Eggerthella sp. HGA1]
          Length = 377

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 67/240 (27%), Gaps = 33/240 (13%)

Query: 8   NLSSMDLVAL------LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
           N+++ +L +         S   H+  +PI ++    +LL ++   ++E  +   +    +
Sbjct: 129 NVAAEELASTEMMRAGFISDFSHEFRTPINSLSGFAQLLMEDDLTDEERREYAGIIVEES 188

Query: 61  IIR------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                          ++   +         +      +  +       D R+ ++     
Sbjct: 189 KRLSGLSERILLLSKMEAAAMLPSIEEVDVAEQLKRTVMLLEPKLEEKDIRIDLNLDACT 248

Query: 109 IDLSRER-AKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNL 157
           +  + +  A++ LNL   A    P G                   S +E +  +   G  
Sbjct: 249 VSGNADYLAQLWLNLLDNAVKFSPHGGRVSLALYGGRTGEEGRTASADEAVIWISDEGCG 308

Query: 158 AR---FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    F +   G+         +       +A  +   +  +       V    L 
Sbjct: 309 MDSATMAHIFDRFYQGDSSHASKGSGLGLALCKRIAELHGGTVDVQSAPGKGAVFEVRLP 368


>gi|291294703|ref|YP_003506101.1| histidine kinase [Meiothermus ruber DSM 1279]
 gi|290469662|gb|ADD27081.1| histidine kinase [Meiothermus ruber DSM 1279]
          Length = 360

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           +A++      +++        L S + H++ +P+ A+    E L +     E     + R
Sbjct: 123 LAQDFNRMTEALEKVEQHRTELLSSVAHELRTPLSALQGYSEALADGVLPPEQAAAHIER 182

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------VS 103
                  +      ++     +V+    +  +E   ++ +                  + 
Sbjct: 183 EVRAMGRLIDDLALVSRIEAQAVELHPQVVAVEAAFQEALERYATAFEACGVALKLNPLP 242

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160
            +           ++L NL   A    P GG+V +S     +     +   G        
Sbjct: 243 SSVALWADPLRLQQVLSNLLSNALRYTPAGGEVVLSASLQSHHVRICVCDTGVGIPLEHQ 302

Query: 161 PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           P  F +                +       L      ++  E            L +
Sbjct: 303 PRIFERFYRADPARSRHTGGSGVGLTIAKGLVEAMGGQMGFESEVGKGSCFWFTLPR 359


>gi|284052122|ref|ZP_06382332.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira platensis str. Paraca]
 gi|291571292|dbj|BAI93564.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 378

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 56/230 (24%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----------EVMQLI 53
           N     S+ +L     S + HD+  P+ ++    +LL     +            ++   
Sbjct: 148 NQQLLRSNQELE-QFASVVSHDLQQPLTSLKAFAQLLQIECSDQLKEKPREYVNHIINAS 206

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                     L +                      +  +  +    + +++ +   +   
Sbjct: 207 IRMQRMIQDLLIYCGCDTHSPALELIDCNQVLAQILVDLRLEIEKNNAQIKYNNLPQIKA 266

Query: 111 LSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
            +    ++  NL   A           + IS Q++    IF    NG      E    F 
Sbjct: 267 NNIHLTEVFQNLISNAIKYRSDDLAPLINISCQETDTNWIFCCADNGIGIDSQEFENIFK 326

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +         I       +      ++  E              K
Sbjct: 327 IFTRLHTFKKYPGTGIGLSICKKIIESYGGKIWLESNPGLGTQFYFTFPK 376


>gi|225017309|ref|ZP_03706501.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
 gi|224949926|gb|EEG31135.1| hypothetical protein CLOSTMETH_01235 [Clostridium methylpentosum
           DSM 5476]
          Length = 586

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 65/226 (28%), Gaps = 25/226 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     S + H++ +P+ +I   ++ L     ++       + +I + S      L+ 
Sbjct: 350 EQMRTDFVSNVSHELKTPLTSIIGFVDTLKAGAMEDADTARHFLDIISIESGRLYRLLQD 409

Query: 67  M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +            +        +    +  + +       +   ++V         +R+R
Sbjct: 410 ILTLSSIESADQDVNVSPVALGEIARQVDQLLRPKAGDKQLAFEIRVEDNLPPFACNRDR 469

Query: 116 A-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L+N+   A      G  V  +++   +     +   G      +   ++ +     
Sbjct: 470 ISQMLINIIENAVKYTEHGS-VITTIEKRGDNLKICVSDTGIGIPADQL-DRVFERFYRV 527

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 ++    +    V  +    +  +            +  L 
Sbjct: 528 DKGRSRSMGGTGLGLSIVKHIVLLYQGSVSVSSEVGKGSEFTIFLP 573


>gi|197116915|ref|YP_002137342.1| HAMP/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197086275|gb|ACH37546.1| sensor histidine kinase response regulator, HAMP and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 997

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 67/242 (27%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +    ++  ++ + +L   I HD  + + ++  + EL    L         +Q I +SS 
Sbjct: 617 EAQMLHVQKLESLGVLAGGIAHDFNNILMSVMGNAELALLTLPPESPARTNLQNIEISSQ 676

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    + M             +D    + ++  ++E  I+    V+ +       +S +
Sbjct: 677 RAADLARQMLAYSGKGNFIIEKIDVNRLINEMNHMLEVSISKKVDVRFNLDSGLPLVSVD 736

Query: 115 RAKILLNLFMVAHASLPRGGKVT----------------------ISVQDSKNENIFSLK 152
             +I   +  +   +    G                                    F + 
Sbjct: 737 ATQIRQVIMNLVINASEAIGDRCGVISISTGAMECDAAFLSKLWLNDTLKEGTYLYFEVA 796

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +G          +I D    +      +    V+ +   +K  +            +  
Sbjct: 797 DDGCGMDQATL-AKIFDPFFTTKFTGRGLGMAAVLGIIRGHKGTIEVHSEPGKGSRFTVF 855

Query: 213 LE 214
           L 
Sbjct: 856 LP 857


>gi|108756768|ref|YP_628988.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108460648|gb|ABF85833.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 859

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 64/245 (26%), Gaps = 30/245 (12%)

Query: 1   MAKNICFNLSSMDL-----VAL-----LCSRICHDIISPIGAIHNSLELLDE------VG 44
           +A+ +   L +  L      A+       S   H++ +P+ ++     L+D         
Sbjct: 607 LARRVAVALENASLYRDAQAAVRLRDEFLSVASHELKTPLTSLKLQHGLIDRAALGDVGD 666

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAV 96
                +             +  +                 VD    + D    +E+  + 
Sbjct: 667 KVRPRLATAVRQVQRLSALVDSLLDVSRISLGRLMLEPSDVDLGQAVRDAVDRMEEVFSQ 726

Query: 97  DKR---VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
                 V+V         +    ++L+NL   A         +  +  + +     S++ 
Sbjct: 727 AGCPVRVEVPGPLPGKWDALRLDQVLVNLLTNAAKYGAGRPVLVEAAFEGEEMVRVSVRD 786

Query: 154 NGNLARFPEKFT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            G      +      +      +       +  Y    +      R+  E       + +
Sbjct: 787 EGIGIAAEDLPRLFGRFERAVSDRHYGGLGLGLYISRQIVDAMGGRIEVESRPGLGSIFT 846

Query: 211 ALLEK 215
             L +
Sbjct: 847 VRLPR 851


>gi|320104460|ref|YP_004180051.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319751742|gb|ADV63502.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 976

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 61/225 (27%), Gaps = 30/225 (13%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70
           + L S + H+I +P+  I    E+L +   E    + +R+   +    L  +        
Sbjct: 536 SFLAS-MSHEIRTPLTLILGYTEMLMDQETEPWKTEALRVVRHNGEYLLALLNDILDLSK 594

Query: 71  ------FGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119
                       VD    L D+    +          +           +       ++L
Sbjct: 595 IEAGKLETRFEPVDPFDLLRDVVDPFQPRARAKGLRLELTCATPLPRRVVTDPVRVRQVL 654

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN------ENIFSLKINGNLARFPEKFTQIVDGNV- 172
           +NL   A     +G    ++  + +           ++   G     PE+ +++      
Sbjct: 655 VNLIGNALKFTDQGSVRVVASAEWEPTTGSARWIEIAVHDTGIGM-TPEQMSRLFRPFEQ 713

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    +   +       LA      +  E +     V    
Sbjct: 714 VDPSLTRRHEGTGLGLAISRRLARMLGGNITVESVAGQGSVFRFR 758


>gi|307721459|ref|YP_003892599.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
 gi|306979552|gb|ADN09587.1| Hpt sensor hybrid histidine kinase [Sulfurimonas autotrophica DSM
           16294]
          Length = 764

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 60/234 (25%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +         S + H+I +P+ AI   + LL +  I ++    + +   S  
Sbjct: 146 ARQEALRAAQAK--EYFLSNMSHEIRTPLNAILGFVNLLMDEDISNKHRNYLDIILNSGE 203

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +     ++        +      + + ++    + V                   
Sbjct: 204 NLLSIINDILDFSKLRSGEFNIEAKVFSLHEELSHTMELFVASANSKDITITSFIDPRIP 263

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            E         +I+ N    A    P GG + +       +   S+  NG      +   
Sbjct: 264 KELFGDVLRIKQIVSNFLSNAIKFTPVGGVIKVEASCHNQQLTISVNDNGVGINKEDLQN 323

Query: 166 QIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             V      +      +   +       LA     ++               + 
Sbjct: 324 IFVAFTQARSSEHDNKEGSGLGLCISHQLAELMHGKVHVNSKVGEGSTFWLDIP 377


>gi|256005571|ref|ZP_05430531.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281418897|ref|ZP_06249915.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|255990479|gb|EEU00601.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281407354|gb|EFB37614.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|316941508|gb|ADU75542.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 463

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 76/230 (33%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
           N+   L + + L   + + + H++ +P+  + + +E + +     + + ++      +  
Sbjct: 232 NLAQTLENQEALRKKMSADMAHELRTPLATLQSHMEAMIDGIWEPDADRLKSCYEEIIRI 291

Query: 61  IIRLKFMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +  +     Y         +V  +  L        +    +  +++++ G   ++  
Sbjct: 292 NKMVGDLEKLAKYESEGFVLDKTVFDMSALIRRIICNFEPEFKNNGIEIAFEGGTEEIFA 351

Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +    +++++NL   A      GGKV IS +   +     +K NG      +    F ++
Sbjct: 352 DKDKMSQVIINLLSNALKYTQEGGKVEISAKSKGDVLEIRVKDNGQGIPEEDLPFVFERL 411

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +           I       +   +   +      +        L K
Sbjct: 412 YRADKSRNRKTGGAGIGLTIAKTIVEAHNGHIEVYSKINEGTEFLITLPK 461


>gi|220917725|ref|YP_002493029.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955579|gb|ACL65963.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 379

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 64/219 (29%), Gaps = 10/219 (4%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSA 60
               +  +     L   I HD+ +P+G I  SL +L     +     + +  I      A
Sbjct: 161 QQARVERLSTFGQLVGSIGHDLRNPLGVIETSLYILRGRVGDDERARKHVDRIGEQLGVA 220

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
              +  +             + +G +       +     V V+  G +     +      
Sbjct: 221 NGIITNLLDMIRNRPLAREPVDVGQVVAAAAAAVKHAPGVSVAVEGFEGLPPVDGDPGQL 280

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ +NL   A  +    G VT+  +        +++  G       +  ++ +  + + 
Sbjct: 281 RQVFVNLLENAAFAAAPQGAVTVRARRDDGALEVAVEDTGPGVDPATRR-RLFEPLITTK 339

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +            +  L 
Sbjct: 340 DKGIGLGLALVKRIAERHGGSVEYSDRPGGGARFTVRLP 378


>gi|149174474|ref|ZP_01853100.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
 gi|148846584|gb|EDL60921.1| sensory box histidine kinase [Planctomyces maris DSM 8797]
          Length = 488

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 63/220 (28%), Gaps = 21/220 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAIIRLKFMRLAFGYT 74
           A   S + H++ +P+  I   +E+L +   E E   +L    +       + +       
Sbjct: 251 AEFVSSVAHELKTPMSGIKAYIEMLIDGDCEPEEADELYGFINDQIDRLTRLVNSMLNLA 310

Query: 75  GSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KIL 119
                ++ +   +             +       D +     +   + +  ++    + +
Sbjct: 311 RIESGVVEIKRHDHELNDILKTAADVISPTATEKDIKFTAELSDMYLPVFVDKDMLGQAI 370

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD-GNVEST 175
           +NL   A    P G +V +  +      +  ++  G        P  F +         +
Sbjct: 371 INLLSNAVKYTPNGREVRLRSRMEDTTAVIEVRDTGLGIPENSLPHIFDRFYRVPENNRS 430

Query: 176 IDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALLE 214
                +    V  +    +   +  +   D     +  + 
Sbjct: 431 AAGTGLGLALVHFIVTNVHNGSISVQSQVDEGTCFTVTIP 470


>gi|116748924|ref|YP_845611.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697988|gb|ABK17176.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Syntrophobacter fumaroxidans MPOB]
          Length = 491

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 64/232 (27%), Gaps = 22/232 (9%)

Query: 4   NICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           ++   +  ++ L A+  + + I H++ +P+G+I    EL+ E       + +   +I   
Sbjct: 244 SVRNQIQKLERLAAVGKVSAHIAHEVRNPLGSIKTLTELIREDLRPDETQAKYADVILDQ 303

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKIDL 111
                  ++ +      +        L  +   +       F      V+  +      +
Sbjct: 304 VGRLDRLIEDVLSFSRSSLLNVEKAELPVLLSQMIDLARHSFPEKGVNVEEQYDPVLPPV 363

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISV---------QDSKNENIFSLKINGNLARFPE 162
             +  ++      V   +                      + +     +K +G       
Sbjct: 364 WCDPERLCQAFLNVLINAFEACAAGGHIKVSATYERGGTANGSVIGIRVKDDGPGIPESN 423

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +      +       + + +  R+           +  LL 
Sbjct: 424 L-QKVFEPFFTTKSHGTGLGLACTYNIINAHGGRIEFANRPSGGASVHILLP 474


>gi|325287849|ref|YP_004263639.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
 gi|324323303|gb|ADY30768.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga lytica DSM 7489]
          Length = 495

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLI 53
           MA  I  N+  +     L   L + + HD+ +P+  +   +E L    +   E +  + +
Sbjct: 255 MADTIVSNIDKIQSVDTLRRELIANVSHDLRTPLAILKGYVETLQIKKDTLTEVQKDEYL 314

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQ 101
           +++  +       +   F Y+      +        I +                   +Q
Sbjct: 315 QITHNNIDRLSNLINQLFEYSKLESEQVTPVKEPFSITELSYDLIEKFKVIAEKKQITLQ 374

Query: 102 VSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +  + E   +  + + +   L      A       GKVT++++    +   ++   G   
Sbjct: 375 MDASNENNFVYADVSMVERALQNLLENAIKYTEPNGKVTLAIKKQAKKVEINITDTGAGI 434

Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E    F +    +         +    V  +   +   +            S  L 
Sbjct: 435 PINEQPYIFDRYKQLDKSEKKRGAGLGLAIVKKIMEMHDTTITVLSKPKEGSTFSFTLP 493


>gi|302036227|ref|YP_003796549.1| putative phosphate regulon sensor histidine kinase PhoR [Candidatus
           Nitrospira defluvii]
 gi|300604291|emb|CBK40623.1| putative Phosphate regulon sensor histidine kinase PhoR [Candidatus
           Nitrospira defluvii]
          Length = 619

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 19/233 (8%), Positives = 53/233 (22%), Gaps = 30/233 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--LIRLSSMSAIIRLKFMR- 68
             +     + + H++ +P+ +I   +E L + G ++       + +    +      +  
Sbjct: 371 EKIRKDFVANVSHELRTPLTSIKGYVEALLDGGKDEPATATAFLEIIMRQSNRLNLILDD 430

Query: 69  ----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRE 114
                             VD    L     VI+                           
Sbjct: 431 LLQLSQIESGQVLFRREPVDLRALLERTVAVIKPLADKKHHTIELSLPDEYWVVEGDEER 490

Query: 115 RAKILLNLFMVAHAS--------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
             ++ +NL   A           +       +     +      +  +G      +    
Sbjct: 491 LVQVFINLLENAVKYTPDQGRISMAIRNATHMRAATPRPMIEIVVADSGIGIPEADRPRV 550

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +      +    +    V  +   +  ++  E            L 
Sbjct: 551 FERFYRVDKARSRELGGTGLGLAIVKHIVEAHSGQVWVEGNTPRGSRFVVHLP 603


>gi|271499646|ref|YP_003332671.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
 gi|270343201|gb|ACZ75966.1| integral membrane sensor hybrid histidine kinase [Dickeya dadantii
           Ech586]
          Length = 962

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 463 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDANRLVEAM 522

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
             S+ + LK +     ++      + +   E    + I                     +
Sbjct: 523 QNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHIVSNYLPLVVKKRLELYCYI 582

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                 + +  +    ++L NL   A      G  V   V   +   +F ++  G     
Sbjct: 583 DPRVPLQLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVVCSDEGYLVFKVRDTGVGIDT 642

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       +       L       +  E            + 
Sbjct: 643 RAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEFGIRIP 701


>gi|262193875|ref|YP_003265084.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262077222|gb|ACY13191.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 321

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 57/219 (26%), Gaps = 23/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM------- 67
           S + H++ +P+ +I   +E L +        +D+ + L+          +  +       
Sbjct: 86  SSVSHELRTPLTSIRMFIETLRDNRVTDPEDKDQCLALLEREMHRLDGLVARLIELTRME 145

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                         + +               +   V V+   +        A+ L+NL 
Sbjct: 146 TGKHNFRRDPVSIDEVVRDALAAFDAATLPTRIPIDVTVTPGMKVTGDRATLAQALVNLL 205

Query: 124 MVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTI 176
             A    P         +    K      +  NG      E+             ++S  
Sbjct: 206 TNAWKYTPNEQPCIGLTATPHGKRHIEIVVADNGIGIPRAEQKAIFDKFERGQEAIQSRT 265

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +   +K R+       H       L K
Sbjct: 266 GGVGLGLATVRAIVRAHKGRIELRSRPGHGSEFRIYLRK 304


>gi|218129844|ref|ZP_03458648.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
 gi|217987954|gb|EEC54279.1| hypothetical protein BACEGG_01425 [Bacteroides eggerthii DSM 20697]
          Length = 629

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 15/235 (6%), Positives = 60/235 (25%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50
           + +     + + +       L +   + + H+I +P+ AI     LL   ++    +  +
Sbjct: 383 LKETEAMLIQAKEKAEESDRLKSAFIANMSHEIRTPLNAIIGFSGLLPYMEDAKEREYYI 442

Query: 51  QLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            LI  ++   +  +                          + +        +     ++ 
Sbjct: 443 SLINHNNKLLLNIINEVLDLSKIEAGHMELTPVWFSLSELIDESCTEYRSNVPEGVTLKK 502

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARF 160
            +      + ++  +I   L  +   +L    +  +    +  ++    S+   G     
Sbjct: 503 RYPASPFLIEQDSMRIKQILSNLLSNALKNTTQGYVEVSYETEQSGVKISVTDTGRGIPQ 562

Query: 161 PEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +      +       +  +    +    +       +    
Sbjct: 563 EKLGVIFERFEKVDSYIQGAGLGLSICKSIIEQMNGTIEVASVLGEGSTFTVTFP 617


>gi|196232941|ref|ZP_03131790.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196222919|gb|EDY17440.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 1151

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 28/239 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL-------IRL 55
            +        M+ +  L   I HD+ + +G I  SL++L     + +  +L        + 
Sbjct: 771  EQQFLRAQRMESIGTLAGGIAHDLNNSLGPILMSLDVLRMKFPDPDSRELLDLIQSSAQR 830

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            S+      L F R   G   +V     L +IE+++ D    + +++  +  +   +  + 
Sbjct: 831  SADMVRQVLSFGRGIEGRKMAVQVKHLLREIEKIVNDTFLKNIQMRADFPRDLWTVVGDP 890

Query: 116  ---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157
                ++LLNL + A  ++P+                              +  ++ +G  
Sbjct: 891  TQLHQVLLNLCVNARDAMPQGGLLSITAENLTLDAQYAALNPEAKPGRYVLIRVEDSGTG 950

Query: 158  ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I D    +        +  Y  + +   +   +      +        L 
Sbjct: 951  I-PPEILEKIFDPFFTTKEVGKGTGLGLYTSLGIVKSHGGFVRVSSEVNQGTRFQVYLP 1008


>gi|126731309|ref|ZP_01747116.1| C4-dicarboxylate transport sensor protein DctB, putative [Sagittula
           stellata E-37]
 gi|126708220|gb|EBA07279.1| C4-dicarboxylate transport sensor protein DctB, putative [Sagittula
           stellata E-37]
          Length = 586

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 66/233 (28%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +A        S  L AL  + + + H++  P+ A+   L     LL     +        
Sbjct: 347 LAVAEQSLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRPDEALTAFHR 406

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSW 104
           +  LI            F R        VD    L     ++E           R+    
Sbjct: 407 IDDLIERMGAITRQLKGFARKGQETFSPVDMGEALASSLSMMEPQLKSRRVKITRLLPDT 466

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
             + +       ++L+NL   A  +        + +   +      S++ NG+     E 
Sbjct: 467 PVKVMGDRMRIEQVLVNLLRNALDATKSVDDPQVEIILAAGETATLSVRDNGDGI---ED 523

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +    D   +       +  E   RL     +D   V    L 
Sbjct: 524 LDALFEPFYTTKAPGDGVGLGLAISSGIVSELGGRLTARNGEDGGAVFEMQLP 576


>gi|154249101|ref|YP_001409926.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
 gi|154153037|gb|ABS60269.1| histidine kinase [Fervidobacterium nodosum Rt17-B1]
          Length = 466

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 74/236 (31%), Gaps = 22/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60
            K +        +     + I H++ +P+ AI   +E +L+    ++E+ + + +    +
Sbjct: 230 EKEVQKLKELDKIKTNFIANISHELRTPLAAIKAYVETMLNMPMSQEEIHEFLDVVYSQS 289

Query: 61  IIRLKFMRLAFGYTGSVDSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           I   + +     ++                  + +      + +A +K V V +    ++
Sbjct: 290 IRLEELLSDLLDFSQLESHTMKILKESVNICEIIEHSIETLENMAKEKDVTVEYNCSNLE 349

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLAR---FP 161
           +  +R +I   +  +   ++    +            D        ++ NG       F 
Sbjct: 350 IKCDRKRIEQVIVNLLSNAIKFSDQAKEKRFVRIDVLDEGEIVKIIVEDNGIGIPESAFD 409

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + F +    +      +    +    V  +   ++  +L E            L K
Sbjct: 410 KIFERFYRVDNELTYAVPGTGLGLAIVKEIVELHEGNILVESEVGKYTKFIVTLPK 465


>gi|219848012|ref|YP_002462445.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542271|gb|ACL24009.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 430

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 54/236 (22%), Gaps = 40/236 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L + + H++ +P+ ++   +E L      D   +++   +       + +      +   
Sbjct: 194 LVANVSHELRTPLASLKLLVETLQSAPPPDIAARMLEQMAQEIDAVTQLVDELHELSRLE 253

Query: 78  D---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                               +  I    E          VS     +       ++LLNL
Sbjct: 254 SGRVSLKLEPLAVWPVIERAIERIRPQAERKHHTICTEPVSDLPPALMDGDRIGQVLLNL 313

Query: 123 FMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              A    P                     +       +    + S++  G      +  
Sbjct: 314 LHNAVKFTPEGGTITVAAQVLHIAVDDPPSRTDRPPHPAGTWILISVRDTGIGISSRDIR 373

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +                 +       L   +  R+     +         L 
Sbjct: 374 -RIFERFYKVDRARTRHTGGTGLGLAIAKHLVEGHGGRIWASSQEGRGSTFWFTLP 428


>gi|302035688|ref|YP_003796010.1| heavy metal sensor histidine kinase [Candidatus Nitrospira
           defluvii]
 gi|300603752|emb|CBK40084.1| Heavy metal sensor histidine kinase [Candidatus Nitrospira
           defluvii]
          Length = 467

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 19/218 (8%), Positives = 49/218 (22%), Gaps = 20/218 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL-LDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
              S   H++ +P+  +    EL L           V++            ++ +     
Sbjct: 244 QFSSDASHELRTPLTVMKGESELVLRRPRPVEDYIAVLESNLEEIDRMSRIVEELLFLSR 303

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                             +  +     ++     VD  +                +++LN
Sbjct: 304 ADLGQVKTECEPVRLEALVEDIQRQACLLGQERGVDVIMGTIQPATVRGDELRLRELILN 363

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----- 176
           +   A       G V I +         S++ +G                          
Sbjct: 364 IVDNAVKYSYPQGTVDIDLLVEGRTARLSVRDHGIGIPQDAHKQIFDRFFRTDDARAHTK 423

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +A  +   +  +         + +L 
Sbjct: 424 KGTGLGLAICAWIAEAHHGHIEVQSEIGQGSTFTIVLP 461


>gi|260427187|ref|ZP_05781166.1| C4-dicarboxylate transport sensor protein DctB [Citreicella sp.
           SE45]
 gi|260421679|gb|EEX14930.1| C4-dicarboxylate transport sensor protein DctB [Citreicella sp.
           SE45]
          Length = 577

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +A        S  L AL  + + + H++  P+ A+   L     LL     E        
Sbjct: 338 LASAEQTLEQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRPEEAMTAFHR 397

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSW 104
           +  LI            + R        VD    L     ++E  +   +    ++    
Sbjct: 398 IDDLIERMGAITRQLKSYARKGQSQLSPVDMGEALASSLSMMEPQLKARRVRIAKILPDE 457

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
               +       ++L+NL   A  +        I +   S    + S++ NG+     E 
Sbjct: 458 PVRVMGDRMRIEQVLVNLLRNAIDATKSEAHPEIEIILASGETAVLSVRDNGHGI---ED 514

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +    D   +       +  +   RL      D   V    L 
Sbjct: 515 LDALFEPFYTTKQPGDGTGLGLAISSGIVADLGGRLTARNGSDGGAVFEMQLP 567


>gi|229494556|ref|ZP_04388319.1| sensor kinase, two-component system [Rhodococcus erythropolis
           SK121]
 gi|229318918|gb|EEN84776.1| sensor kinase, two-component system [Rhodococcus erythropolis
           SK121]
          Length = 483

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 61/232 (26%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMS 59
           A       S   +         H++ +P+  I    EL  +  + D    M  I   +  
Sbjct: 248 ASEESARRSEEKMR-RFVGDASHELRTPLTTIRGFAELYRQGAMTDTETLMNRIEGEASR 306

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEK 108
             + ++ + +               D+  V  D +   + +                 E 
Sbjct: 307 MGLLVEDLLMLARLDEQRPLENKPVDLLAVAADSVQAARAIAPDRTVELQMTGGPGLPEV 366

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   +++ NL   A    P   +VT+ V  ++N  +  +   G      +    F 
Sbjct: 367 HGDEARLRQVVANLVGNAIKHTPPDAQVTVRVGTTENSAVVEVSDTGQGLSDEDAARIFE 426

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +           +    V  L   +   +  E            L +
Sbjct: 427 RFYRADTSRTRETGGAGLGLSIVSALVAAHDGTVSVETSLGQGTTFRVELPR 478


>gi|228920112|ref|ZP_04083461.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228839568|gb|EEM84860.1| hypothetical protein bthur0011_11290 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 463

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 61/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 241 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 300

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 301 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 360

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     ++  G             +    +          
Sbjct: 361 NAIRYTNQKGNIVITLEQIYDYCELKIQDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 420

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   E   D    +S  L
Sbjct: 421 GLGLAIVKQIVHIHGGQWQIESEKDKGTTVSIKL 454


>gi|223983561|ref|ZP_03633744.1| hypothetical protein HOLDEFILI_01025 [Holdemania filiformis DSM
           12042]
 gi|223964489|gb|EEF68818.1| hypothetical protein HOLDEFILI_01025 [Holdemania filiformis DSM
           12042]
          Length = 499

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 18/236 (7%), Positives = 66/236 (27%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           MA+ +   ++ ++       +  + + H++ +P+ +I    +LL          ++ + +
Sbjct: 232 MAETVEQKVAELETENQEKEIFINNLSHEMKTPLTSILGYTQLLRRTKMSPQDAEQALDI 291

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWT 105
           I   +         +         +               + ++         R+ V   
Sbjct: 292 IESEARRMERLSSRLMQLIVAARPLSECSAAALDSFIEQAVLRLKPALREKSLRLCVECE 351

Query: 106 GEKIDLSRERAKILLNLF-MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              + +  E  +  L      A  +      +TI  + ++     +++  G   + P   
Sbjct: 352 PLTVLIDEELMQAALRNVLDNAVKASQPQTLITIEAKTTETGWQITVRDEGCGIQDPH-P 410

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +++                  +       +   +   +  +    H   +  +  
Sbjct: 411 ERMLQPFVMEDQARSRKHHGAGLGLALTQRIVQAHGGMVEIDSQPGHGTEVRFVFP 466


>gi|198282503|ref|YP_002218824.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218665404|ref|YP_002424693.1| sensor protein PilS, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247024|gb|ACH82617.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218517617|gb|ACK78203.1| sensor protein PilS, putative [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 530

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 72/231 (31%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLS 56
           A  +        L AL  L + I H+I +P+  I ++  LL    +      ++ ++   
Sbjct: 292 ASALRAREREAQLAALGRLAANIAHEIRNPLSVIRHAGNLLAERMDDPASQHLLDILERE 351

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGEK 108
           ++     ++ +      + +    I L     ++   +  D  +        ++S     
Sbjct: 352 TVRINAIVESVLEMARPSPAHSEPISLRSWLPMLTAQLQADPLLAPMSIVIGEISPQLTV 411

Query: 109 IDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                +  ++  NL   +                +V + +   + +L+  G      E  
Sbjct: 412 YADPAQLRRVFWNLLHNSAQYGVAEDATMRVEIDAVPEDEGSIMVTLRDFGPGV-KAEVM 470

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I +    +      +    V  L   N  R+  E      V+    L +
Sbjct: 471 ERIFEPFFTTNPRGTGLGLSMVRELLRINDGRITCENHPQGGVLFRIFLPR 521


>gi|195940752|ref|ZP_03086134.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4024]
          Length = 741

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   M  V  L   + HD  + +  I  SLEL D    +   +     ++     
Sbjct: 390 EEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTDSSSPDAPRITRALKAAERGAM 449

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     + +        +  + +++
Sbjct: 450 LTQRLLAFSRKQALHPHAVEMKPLLENLSELMRHSLPATLTLDIEAQTPAWPVWIDVSQL 509

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G      E  +
Sbjct: 510 ENAIINLVMNARDAMEGQNGVIKIRTWNQRVTRSDGRRQDMVALEVIDHGCGM-SQEVKS 568

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 569 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 620


>gi|253700058|ref|YP_003021247.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774908|gb|ACT17489.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 810

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 68/242 (28%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +    +   ++ + +L   I HD  + + +I  + +L    LD        ++ I  ++ 
Sbjct: 424 QQQLLHTQKLESLGVLAGGIAHDFNNILTSIIGNADLALIHLDPASPAMINLKRIEKAAT 483

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    K M            + D  + + +++ +++  I+    +  +       +  +
Sbjct: 484 RAADLAKQMLAYSGKGRFVVEATDINLLVEELKHILQVSISKKAVMNYNLARSLPAVDAD 543

Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152
             +I   +  +   +                                           + 
Sbjct: 544 ATQIRQVVMNLVINASEALGEKDGVINITTGSVQCDGNYPQETWPTDTVLQGPYVFVEVA 603

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G     PE  ++I D    +      +    V+ +   +K  +          V + L
Sbjct: 604 DTGCGM-SPETVSKIFDPFFTTKFTGRGLGMAAVLGIVRGHKGTIKVGSESGKGSVFTVL 662

Query: 213 LE 214
           L 
Sbjct: 663 LP 664


>gi|148657711|ref|YP_001277916.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569821|gb|ABQ91966.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 577

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/226 (11%), Positives = 56/226 (24%), Gaps = 28/226 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           ++  + + H++ +P+ AI   ++LL          E++  +     +    L  +     
Sbjct: 310 SMFLATMSHELRTPLNAILGYVQLLHLEAHMRGRSEMLPDLERIRSAGKHLLTIISNILD 369

Query: 73  YTGSVDSLIGLGDIEQ---------------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           ++      + +                    +  +       V     G     + +  +
Sbjct: 370 FSKIEQGKMNVEINPFSVDTVAREVIGIIDPLARNRKNTLNLVCPPDAGMMQSDAGKVRQ 429

Query: 118 ILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
           IL NL   A      G     V        +   FS+   G     PE+   +       
Sbjct: 430 ILFNLLSNAVKFTEEGTVTLTVERERHPDGDWVQFSVADTGIGI-APEQMAHLFQPFYQV 488

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       L       +          V +  L 
Sbjct: 489 HQNRSRNYGGTGLGLALSRQLCRLLGGDIRVTSEVGRGSVFTVRLP 534


>gi|91789987|ref|YP_550939.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
 gi|91699212|gb|ABE46041.1| periplasmic sensor signal transduction histidine kinase
           [Polaromonas sp. JS666]
          Length = 919

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/248 (8%), Positives = 61/248 (24%), Gaps = 36/248 (14%)

Query: 3   KNICFNLSSMDLVAL-------------LCSRICHDIISPIGAIHNSLELLDEVG----- 44
           K+     ++  L A                S + H++ +P+ +I    E+L E       
Sbjct: 661 KSQELEAATAKLRAANDRLKELDRMKDDFMSTVTHELRTPLTSIRALSEILLETPQASLA 720

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIA 95
              + + +I   +      +  +            +  +      +    +      F  
Sbjct: 721 ERQKFLGIIVKEAERLTRLINQVLDMAKIESGNAEWHTSELDLREVIEESVAATYATFND 780

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSL 151
               +          +  +R +++  +  +   ++         V              +
Sbjct: 781 RHVTLTQDLASHTPRIRADRDRLIQVMLNLLSNAVKFCHPTRGQVHVSLRQEPGGLRVDV 840

Query: 152 KINGNLA---RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           + NG+          F +       + +      +       +      RL  +    + 
Sbjct: 841 RDNGSGISAANQKIIFERFRQVGDTMTNKPQGTGLGLPISRHIIERFGGRLWVQSEPGNG 900

Query: 207 VVLSALLE 214
              S  L 
Sbjct: 901 ATFSFTLP 908


>gi|75911003|ref|YP_325299.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704728|gb|ABA24404.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1287

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 20/251 (7%), Positives = 59/251 (23%), Gaps = 37/251 (14%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL- 55
            + +       +  +     + + H++ SP+ AI    +LL           + ++ I   
Sbjct: 879  LQRQTEQLTEANRMKDEFLAILSHELRSPLNAILGWAQLLQARRLSEAQTAKGLETIERN 938

Query: 56   ----------------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                                 +              +    I L    + I+    ++  
Sbjct: 939  AKAQTQLIEDLLDISRMIRGKLRLNVRTCNLIPIIETTIENINLAAQAKEIDLTFFLENP 998

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHASLP----------RGGKVTISVQDSKNENIF 149
               +   +         +++ NL   A    P          +      +   + +    
Sbjct: 999  ATENLPFQVSGDPERLQQVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNSYAQI 1058

Query: 150  SLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-ID 203
             +   G           F +    +  +  +     +    V  L   +   +      +
Sbjct: 1059 QVIDTGIGINSSFLPYVFDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGE 1118

Query: 204  DHNVVLSALLE 214
            +     +  L 
Sbjct: 1119 EQGSTFTVKLP 1129


>gi|95929116|ref|ZP_01311861.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135017|gb|EAT16671.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 595

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 57/221 (25%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMR---- 68
             + + H++ +PI AI   +E L +  ++     ++ ++++        + ++ +     
Sbjct: 373 FVANVSHELKTPITAIKGFVETLLDGALDSRDESEQFLKIVERQVERLSVIIEDLMSLSR 432

Query: 69  ------LAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRERAKIL 119
                               + +             +  + ++         +    + L
Sbjct: 433 IEQGEEHERFDLEPEKLAEVISESVNDCTVLAEGLGITLKQELDQDLTSPLNAPLLEQAL 492

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
            NL   A         VTI   +     I  +   G      E   ++ +          
Sbjct: 493 TNLLENAIKYSSTDSTVTIRCYEEDGRAIVRVCDEGCGI-EAEHLPRLFERFYRVDKARS 551

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    V  +   +  R+  E            L 
Sbjct: 552 RQAGGSGLGLAIVKHIVQIHHGRVEVESTPGKGSDFIISLP 592


>gi|186682604|ref|YP_001865800.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186465056|gb|ACC80857.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 709

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 57/217 (26%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  I   ++LL    + +E   +   +          +         +  
Sbjct: 350 AVLSHELRTPLNPILGWIKLLRTHQLSEEKKAIALETIERNAKLQTQLIADLLDVSRILQ 409

Query: 80  LIGLGDIEQVIEDFIA-------------VDKRVQVSWTGEKIDLSRER---AKILLNLF 123
                +I  V                      ++      +      +     +++ NL 
Sbjct: 410 GKLTLNISSVDLAATIAAANETVALAAEAKSIQIHTEIAPDVQLFMGDASRLQQVVWNLL 469

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVESTIDS 178
             A    P GG+V I ++ +       +   G               +  D         
Sbjct: 470 TNAVKFTPTGGEVKIKLESTNTYTQIQVSDTGKGITPEFLPYVFETFRQADSATTRKFGG 529

Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             +    V  +   +   +  +   +D   + +  L 
Sbjct: 530 LGLGLAIVRHIVEMHGGTVHADSKGEDQGAIFTVRLP 566


>gi|320102458|ref|YP_004178049.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
 gi|319749740|gb|ADV61500.1| GAF sensor hybrid histidine kinase [Isosphaera pallida ATCC 43644]
          Length = 815

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 68/256 (26%), Gaps = 43/256 (16%)

Query: 1   MAKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLEL-----LDEVGIED 47
           + +     L      A           + I H+I +PI A+    E+     ++E     
Sbjct: 367 LQRETEEELRRAKQAAEEANQAKSRFLANISHEIRTPIAALCGYSEMVLEPQMEEPERRQ 426

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IA 95
            ++ + R S     +    +  +    G +           ++ED             IA
Sbjct: 427 TLLAIRRNSRHLLELVDDILDFSKIEAGEMTIEHCPVSPRWILEDLLTTMGGRARSKGIA 486

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----------ISVQDSK 144
           +  R+                +ILLN    A     R  ++             ++  + 
Sbjct: 487 IHHRIVEPIPDTITTDPTRLRQILLNFLSNAIKFTDRDKRIDLILQVEPVPASGTLHSAA 546

Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLL 198
           N  +F+++  G     PE  +++                   +       LA      + 
Sbjct: 547 NRLVFTVEDQGPGI-APENLSRLFQPFWQVDGSITRRYGGTGLGLSISQRLAELLGGVIE 605

Query: 199 PEIIDDHNVVLSALLE 214
            E            L 
Sbjct: 606 VESEVGRGSRFRFALP 621


>gi|307353942|ref|YP_003894993.1| multi-sensor signal transduction histidine kinase [Methanoplanus
           petrolearius DSM 11571]
 gi|307157175|gb|ADN36555.1| multi-sensor signal transduction histidine kinase [Methanoplanus
           petrolearius DSM 11571]
          Length = 597

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 63/214 (29%), Gaps = 21/214 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRLSSMSAIIRLKF--------M 67
            H++ +P+  I   L LL +   + E+       ++   LS+      ++          
Sbjct: 382 AHELRTPLQPILGYLHLLTDKDYQAEMSPEVASIIEKCLLSTERECEIVEKILEAGLSES 441

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
                    ++    + +I  + +     +  V +S +           ++   + + A 
Sbjct: 442 FKINLNVEEIELKQLVEEILNINKIRCNAEVIVDLSDSVRFNADRDRIYQVFEGIILNAV 501

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STIDSHDI 181
                  KV+IS ++  + +I S+  NG                +              +
Sbjct: 502 KYNSDPKKVSISYREDDSNHIISISDNGIGIPPDSVNDIFEPFFIRNSSDLVRGTGRIGL 561

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +K  +  + +       + +L K
Sbjct: 562 GLSIAKRYISLHKGDIRVQSVPGEGSTFTVILPK 595


>gi|284803022|ref|YP_003414887.1| hypothetical protein LM5578_2779 [Listeria monocytogenes 08-5578]
 gi|284996163|ref|YP_003417931.1| hypothetical protein LM5923_2728 [Listeria monocytogenes 08-5923]
 gi|284058584|gb|ADB69525.1| hypothetical protein LM5578_2779 [Listeria monocytogenes 08-5578]
 gi|284061630|gb|ADB72569.1| hypothetical protein LM5923_2728 [Listeria monocytogenes 08-5923]
          Length = 459

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA  +     S        + + H++ SP+ ++     LL    + ++            
Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             RL  +        S+D    L   E V              W+  + +L+        
Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLAEQWRQLIQMTEWSWREKELTINLDLADV 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++  NL   A    P+ G + I + +        ++ +G      +    
Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQDGNIQIHLYEEGTNVFVEVQDSGVGISKVDMTKI 404

Query: 164 FTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 405 FDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458


>gi|229015740|ref|ZP_04172721.1| hypothetical protein bcere0030_3280 [Bacillus cereus AH1273]
 gi|228745545|gb|EEL95566.1| hypothetical protein bcere0030_3280 [Bacillus cereus AH1273]
          Length = 224

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRL 55
           M +     +     +  + + I H+I +P+ A+    ++     L++    + ++Q I  
Sbjct: 5   MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNLEDTMSYEIMLQEIER 59

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-GEKIDL 111
            +      +   +         +    L  + Q++E +     V   +QV          
Sbjct: 60  INEFVSELMLLGKPKPTNYEWCNIREILLYVVQLMESYATQYKVKFHLQVDGNLPVINGD 119

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P+GG + I            S++  G      EK  +I   
Sbjct: 120 DKQLKQVLLNIIKNGIESMPKGGDIQIRAYKKAGENLCISIEDQGFGI-ENEKIEKIGKA 178

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 179 FYTTKENGTGLGLMITYKIIEEHQGSIAIQSSVGVGTKVEIYLP 222


>gi|149195676|ref|ZP_01872733.1| hypothetical protein LNTAR_17328 [Lentisphaera araneosa HTCC2155]
 gi|149141138|gb|EDM29534.1| hypothetical protein LNTAR_17328 [Lentisphaera araneosa HTCC2155]
          Length = 589

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 57/220 (25%), Gaps = 22/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI--------------IR 63
             S + H++ +PI      LE +++   + + ++                          
Sbjct: 365 FVSNVSHELKTPITVTMGFLEAMEDCLDDPDQIKYFYNIIKRNTHRINDIIQDLLILSRL 424

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLN 121
               +         +    L +I  +  D I       VS       +         + N
Sbjct: 425 EIDEKNQNFGFMEKNIAHTLQNIVALTSDEINKKNVSLVSGFEDQVIVANHSLVELAVRN 484

Query: 122 LFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-- 175
           L   A     +   +      DS+N  I  +  NG           F +    +      
Sbjct: 485 LLENAIRYSHKDAPLVTLSLADSENHWIIRVSDNGPGIHTKFQGRIFERFFRMDESRDRN 544

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +A  +  ++  +    +    S  L K
Sbjct: 545 TGGSGLGLAIVKHIAQLHNGKIHLDSSLGNGCTFSLYLPK 584


>gi|121534002|ref|ZP_01665828.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
 gi|121307513|gb|EAX48429.1| integral membrane sensor signal transduction histidine kinase
           [Thermosinus carboxydivorans Nor1]
          Length = 361

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 57/222 (25%), Gaps = 19/222 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-----------S 59
           +  L   L + I H++ +PI  I  +LE + +  IE    QLI L               
Sbjct: 138 NEKLRKRLLADIAHELRTPITIIQGNLEGMIDGIIEPNKAQLISLYEEAVHLSRLIKDLR 197

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKI 118
            +       L    T      +    I  +          +  S              +I
Sbjct: 198 DLSLANAGHLPLEKTKVSLLQLAGRSIALLNPIAEEKGILLSYSGSDAIVEADPGRTTQI 257

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173
           + NL   A        +VT++V +       ++  +G                      +
Sbjct: 258 IQNLLSNALRYAR--TRVTVTVTEEDEWAEVAVADDGPGIPPEHLPHIFDQFYRIDEARD 315

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  I    V  L   +   +    +           +K
Sbjct: 316 RQSGGSGIGLAIVKSLVEAHGGTVSVHSVPGEGTTFMVRFKK 357


>gi|154253570|ref|YP_001414394.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Parvibaculum lavamentivorans DS-1]
 gi|154157520|gb|ABS64737.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Parvibaculum lavamentivorans DS-1]
          Length = 371

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 71/241 (29%), Gaps = 29/241 (12%)

Query: 1   MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51
           MA+ +   L+   +   V  + + + H+I +P+  I  + +LL+      +  +   + +
Sbjct: 123 MAQKMDRQLTHRGAARSVTGMAAILAHEIKNPLSGIRGAAQLLELSGSPDDKTLTRLICE 182

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                         F          V+  + LG ++Q+     A   R+   +      +
Sbjct: 183 ETDRICKLVDRMEVFSDERPVPREPVNIHLVLGHVKQLATTGFARGIRIVEEYDPSLPPV 242

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENI---------------FSLKI 153
             ++ +++         A  ++       +     +                     +  
Sbjct: 243 LGDKDQLIQVFLNLVKNAAEAIGNPDGEIVLTTAYRPGVRLSMPGSRDRVSLPLEICVID 302

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G      +    + D  V +      +    V  +  ++   +  E +     +   LL
Sbjct: 303 DGPGV-ADDLMEHLFDPFVTTKSSGTGLGLALVAKIIGDHGGIIECESLP-RRTIFRVLL 360

Query: 214 E 214
            
Sbjct: 361 P 361


>gi|189423629|ref|YP_001950806.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419888|gb|ACD94286.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 893

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 69/239 (28%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
           AK +    S       L + + H++ +P+  +   ++LL+       ++E +Q++R S+ 
Sbjct: 503 AKEMAEATSRAK--TELLATLSHELRTPLNGVMGGVQLLEMTDLSADQEEYLQMVRTSAT 560

Query: 59  SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWT 105
           + +  +  +              +   + L  +     +    +          +  S  
Sbjct: 561 NELALVNDLLDLAGLEASGLKVESTPFNLLESIKLAITLHRSALETRGLPLVTSLPESLA 620

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFP 161
              I   R   +I+ NL   A     +GG            S+      +   G      
Sbjct: 621 QLVIGDGRRLTQIVSNLLGNAIKFTEQGGISLAADCTPCGGSELRLQVRVSDTGIGIAEK 680

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I +  V              +       LA      +  + I       +  L 
Sbjct: 681 DL-QRIFEPFVQADMSSTRRFGGTGLGLAICHRLAERMGGSIRVDSIPGEGSSFTLELP 738


>gi|86357941|ref|YP_469833.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CFN 42]
 gi|86282043|gb|ABC91106.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CFN 42]
          Length = 867

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 70/246 (28%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  + A+  L   I HD  + + AI  S +  LL     +     L+ + 
Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDASFADLMEIK 523

Query: 57  SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106
                        L F R        ++    +GD+  +++                   
Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583

Query: 107 EKIDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P                      S   +++  +  +
Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPDGGTLTLRTRNLTAADVATFNYSYMPAEDMVLVEV 643

Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +I +    +        +    V  +  ++   + PE         
Sbjct: 644 ADTGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702

Query: 210 SALLEK 215
              L +
Sbjct: 703 RVFLPR 708


>gi|52144035|ref|YP_082793.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977504|gb|AAU19054.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 466

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    S+K  G             +    +          
Sbjct: 364 NAIRYTHQNGDIMITLRQIDDYCELSIKDTGIGIDKEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKLK 458


>gi|301057171|ref|ZP_07198302.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300448729|gb|EFK12363.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 411

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 61/224 (27%), Gaps = 17/224 (7%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSMSA 60
                    +L  + + I H+I +P+  I      L +   +   ++    +I   +   
Sbjct: 177 LATQVEKRSSLGRMAAGIAHEINNPLTGILLYSSNLRKKVEKGSQLEEGLNIIIKETQRC 236

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRER 115
              +K M            L  +  I       V  +F      ++       ++   ++
Sbjct: 237 KRIIKGMLEFSREQEPEMMLADINRIMESALGIVENEFRLRQVHIRKELAQNMVNTFLDK 296

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDG 170
            +I      +   +L    +  + +  S  +         +  +G      E   +I + 
Sbjct: 297 NQIEQVFINLLLNALQAVEEKGLVIVRSDVDSKAGSVHMEVSDDGCGI-VEENLNKIFEP 355

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  D   +       +   +K  +      +        L 
Sbjct: 356 FFSTKGDGTGLGLAVSYGIVENHKGNIRVISKPNRGARFIVELP 399


>gi|229071024|ref|ZP_04204250.1| hypothetical protein bcere0025_31970 [Bacillus cereus F65185]
 gi|228711964|gb|EEL63913.1| hypothetical protein bcere0025_31970 [Bacillus cereus F65185]
          Length = 417

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 71/223 (31%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58
           K          + + L + I H+I +P+  +H   +LL+E       +D+ ++++ +   
Sbjct: 195 KEKLQRAEKFYIASELAASIAHEIHNPLTTVHGFTQLLNEKHASKLSQDQYLEIMLIEMQ 254

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111
                +           ++   I +  I   ++D          V+ +   + +      
Sbjct: 255 QIQSTINNYLSLTKPQNTLKEKIDINHILNQVKDTISPLALSYKVEIKQNSTDSFYINGD 314

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +    L N+      ++  GG + I++Q  K   +  +  +G      +   +I    
Sbjct: 315 PEKFKLCLNNIIQNGIEAMKNGGLLQINIQKVKGNIMIDIIDSGIGMSSQQIK-RIALPF 373

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +T     +       +  E    +  E         S  + 
Sbjct: 374 YSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTRFSISIP 416


>gi|217037915|gb|ACJ76429.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 19/229 (8%), Positives = 56/229 (24%), Gaps = 25/229 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF 66
           S    +   + + H++ +P+  I    ++++    +     ++  L+        +    
Sbjct: 407 SNKAKSTFLATMSHELRTPLNGILGMAQIIESNIKDEEQHKQIKVLLESGDHLLSLLNDI 466

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRE 114
           +  +      ++          VI+      + +             ++     I     
Sbjct: 467 LDFSKIEQNKLELNHASFYFNDVIDPIANTYQSICEDKGLQFIIDNNINEKTIFIGDKPR 526

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVD- 169
             +I+ NL   A     +G              +      ++  G   R           
Sbjct: 527 IRQIIFNLISNAVKFTHKGSITLNFSHTLTAKGEQAVQIKVQDTGIGIRKKRLKHIFEPF 586

Query: 170 ----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         +    V  L    K  +     +      + +L 
Sbjct: 587 IQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635


>gi|209549555|ref|YP_002281472.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209535311|gb|ACI55246.1| multi-sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 867

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 73/246 (29%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  + A+  L   I HD  + + AI  S +  LL     +     L+ + 
Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLMEIK 523

Query: 57  SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106
                        L F R        ++    +GD+  +++                   
Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P GG                   S   +++  +  +
Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLIEV 643

Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             NG     PE   +I +    +        +    V  +  ++   + PE         
Sbjct: 644 ADNGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702

Query: 210 SALLEK 215
              L +
Sbjct: 703 RVFLPR 708


>gi|168703766|ref|ZP_02736043.1| sensor histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 483

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 62/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     + S  L A+  L + + H+I +P+ +I   ++   E        + +R+   
Sbjct: 248 LHERELEVIRSEHLAAVGQLAAGVGHEIRNPLTSIKMLVQTGLEGAAPPLSAEDLRIIES 307

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKID 110
                 + ++    +           D+  V                   ++   G  + 
Sbjct: 308 EIRRMERSLQTFLEFARPPKLERRPTDLGAVLESVLGLVRGRAEQQRVATRLELPGPPVV 367

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           L+ +  ++          A   +P GG +T+  + +       +   G          ++
Sbjct: 368 LTADAGQLQQVFVNLVLNALDVMPTGGALTVRARAAGGGIEVEVSDTGPGISKTMLP-RL 426

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 S      +       +  ++   +               L 
Sbjct: 427 FVPFASSKDTGLGLGLVISRRIVEDHGGTMNAGNRAGGGASFFVRLP 473


>gi|51894441|ref|YP_077132.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
 gi|51858130|dbj|BAD42288.1| two-component sensor histidine kinase [Symbiobacterium thermophilum
           IAM 14863]
          Length = 596

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 72/232 (31%), Gaps = 26/232 (11%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
            L  ++ +     + + H++ +P+  + + +E L     D+  + D  ++++   +    
Sbjct: 356 ELERLESMRREFVANVSHELKTPLTTVKSYVETLLDGAADDPEVRDRFLRVVDGETERMA 415

Query: 62  IRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             ++ +           R         + +       +V  D   +    +V        
Sbjct: 416 RLVRDLLRLTQMDEGTLRWNVRPQDVGELVAETVGRLRVQADRKRLTVLCEVDPETPPAL 475

Query: 111 LSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIV 168
              +   ++++NL   A    P GG++ +SV     +    ++   G      +   +I 
Sbjct: 476 CDYDKIQQVVINLLANAIEFTPNGGQIRVSVAPEGADAVRVTIADTGIGIPAQDLP-RIF 534

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           ++    +       +   +   +      D    ++  L 
Sbjct: 535 ERFYRVDKARSRSMGGTGLGLSIAKQIVELSGGAIAIASEVDRGTTVTFTLP 586


>gi|296447467|ref|ZP_06889391.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255005|gb|EFH02108.1| multi-sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 597

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 63/245 (25%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVALLCSR-------ICHDIISPIGAIHNSLELLDEV----GIEDEVM 50
            +       +    AL  +        + H++ +P+ AI    ++L           +  
Sbjct: 311 RRAEDMLAEARRESALASAGKTRFLANVSHELRTPLNAIIGFSDMLASEQLSPADPSKRR 370

Query: 51  QLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK- 98
           +   +   S                              +        ++++      + 
Sbjct: 371 EYAEIIHNSGQHLLAVVNSILDMSKIESGSMQIVPEPFSAQELADQCVKMMQLKAEQARI 430

Query: 99  ---RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                      E +   R   +IL+NL   A    P  G+V + +    N    ++  +G
Sbjct: 431 ALACDYADGLPEIVGDKRACKQILINLLSNAVKFTPADGRVAVRLYPDGNRLAIAVSDSG 490

Query: 156 NLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +   ++ D   +         +   +    V  L   +   +  E        +
Sbjct: 491 IGIAAADLG-RLGDPFFQASAAYDRAYEGTGLGLSVVRGLVGLHGGAIAVESAPQRGTCV 549

Query: 210 SALLE 214
           +  L 
Sbjct: 550 TVRLP 554


>gi|260426759|ref|ZP_05780738.1| phosphate regulon sensor protein PhoR [Citreicella sp. SE45]
 gi|260421251|gb|EEX14502.1| phosphate regulon sensor protein PhoR [Citreicella sp. SE45]
          Length = 346

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 17/226 (7%), Positives = 59/226 (26%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ A+   +E L     ++    D  + ++   +      +  +     
Sbjct: 118 FVANVSHELRTPLTALLGFIETLKGPAREDALARDRFLGIMEAEAGRMERLVGDLLSLSR 177

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                    T  VD    +  +   +          +        +++  +  ++   + 
Sbjct: 178 VEADERVRPTEPVDLPSMVRSVLSGLAPLAEEAGVELAFELPEGALEVPGDPDQLRQVVV 237

Query: 124 M---VAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDG 170
                      RG +            +   +  + ++   G             +    
Sbjct: 238 NLVENGVKYSGRGAEVKVSVSGPEYHSRLRGDAVVITVSDTGPGFDPLHIPRLTERFYRV 297

Query: 171 NV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +    +    V  + + ++ RL  E           +L 
Sbjct: 298 DNHRSREMGGTGLGLAIVKHIINRHRGRLRIESRPGAGAQFRVVLP 343


>gi|239932318|ref|ZP_04689271.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
 gi|291440682|ref|ZP_06580072.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
 gi|291343577|gb|EFE70533.1| two-component system sensor kinase [Streptomyces ghanaensis ATCC
           14672]
          Length = 381

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 52/237 (21%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 137 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 196

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G   Q          R  +      
Sbjct: 197 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQPADRFLLRVQHPL 256

Query: 109 IDLSRERA---KILLNLFMVAHAS--------LPRGGKVTISVQDSKNENIFSLKINGNL 157
            DL  +     ++L NL   A           +                   ++   G  
Sbjct: 257 PDLWADPDKIDQVLGNLLENAVRHGEGNVTIDITPSVSPRERDGAEHAATSVTVSDEGPG 316

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           S      +  Y V  +   +   +      +        L 
Sbjct: 317 IPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPEGGAQFRFTLP 373


>gi|298530365|ref|ZP_07017767.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509739|gb|EFI33643.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 645

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 64/257 (24%), Gaps = 44/257 (17%)

Query: 1   MAKNICFNLSSMDLVALL----------------CSRICHDIISPIGAIHNSLELLDEVG 44
           +A +    L      ALL                 + + H+I +P+  I   +++L    
Sbjct: 242 LAISRDITLQKQAQQALLNAKKDAEAANQSKNEFLANMSHEIRTPLNGIEGMMQMLLSTP 301

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------ 98
           +  E  + I +   ++    + +      +        +      ++D            
Sbjct: 302 LNSEQQKFIEMGHQASRRMTELLSDILDLSRLEAGREDVSKRTFNLKDVCDSLWDLLGIK 361

Query: 99  ----------RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDS 143
                      +  S     +  S    +IL NL   A                      
Sbjct: 362 SREKGIPLTFNLSPSLPDTLMGDSTMVRQILFNLVGNALKFTEHGQVTLDIHPLPQSHQD 421

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRL 197
           + + +F++   G      +K  +I               +   +       LA      +
Sbjct: 422 QLQVLFTVSDTGPGI-PDDKQDRIFKPFDMVNGSLTRKHEGKGLGLTVTHRLAKLMGGTI 480

Query: 198 LPEIIDDHNVVLSALLE 214
             +  +     +   L 
Sbjct: 481 SVDSAEGQGTSIYVTLP 497


>gi|184201521|ref|YP_001855728.1| two-component histidine kinase SenX3 [Kocuria rhizophila DC2201]
 gi|183581751|dbj|BAG30222.1| two-component histidine kinase SenX3 [Kocuria rhizophila DC2201]
          Length = 397

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 70/235 (29%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A +    + +  +     + + H++ +P+GA+    E +++   ++E ++    S    
Sbjct: 137 LADDQTEIVRAQSIRNDFVANVSHELKTPVGAVSLLSEAIEDAAGDEESVRHFAASLQRE 196

Query: 61  IIRLKFMRLAFGYT------------GSVDSLIGLGDIE---QVIEDFIAVDKRVQVSWT 105
            +RL  +                     VD    +G+     ++  +   ++ RV     
Sbjct: 197 SMRLSALVQDIIELSRLQGTDVVAKGTPVDLNRTVGEAVDRSRLAAETKHIEIRVGGRID 256

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                        + NL   A    P   +V + +++       ++   G      E   
Sbjct: 257 VPVFGDPDMLVTAVRNLIDNAVRYSPEHTRVGVGLRERDGMAQITVTDQGPGIPESE-QD 315

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +    V  +  ++   +            + +L 
Sbjct: 316 RVFERFYRVDSARSRQTGGTGLGLSIVKHVMAQHGGEVSVWSQPGRGSTFTLVLP 370


>gi|331085995|ref|ZP_08335078.1| hypothetical protein HMPREF0987_01381 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330406918|gb|EGG86423.1| hypothetical protein HMPREF0987_01381 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 453

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 75/233 (32%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
           M + +              S + H++ +P+  +    +  L E  + D   + I L +  
Sbjct: 223 MLEQLEMVFQREK---RFTSDVSHELRTPVSVMLAQCDACLSEETLTDRQREQIELIAKK 279

Query: 60  AIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           A      +      +                 +    + + +Q+I +   +  R +++  
Sbjct: 280 AREMAGLISSLLLLSRADEGRQKLNKERVNLSELTQIIAEEQQMIAEEKEITVRTEITPD 339

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++++NL   A      GG V IS+Q  +   +  ++ NG      +   
Sbjct: 340 IYAQVDESFYIRMVVNLVSNAVFYGREGGIVKISLQAKEENVVGIVEDNGIGISVHDMEH 399

Query: 163 KFTQIVDGNVESTIDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +   T  SH  +    V  +A  +  R+  E  +      +  + 
Sbjct: 400 IWERFYRADTSRTDGSHFGLGLSMVKWIAEAHGGRVSVESREGEGSRFTFYIP 452


>gi|313682906|ref|YP_004060644.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155766|gb|ADR34444.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 722

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK    + + +   +   + + H+I +P+ ++    +LL++   E + +Q +       
Sbjct: 237 MAKEEAVSANQLK--SEFLANMSHEIRTPLNSVIGFSDLLEQEVKEPKQVQYLHAIKNGG 294

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 + L   +       I    IE   +  + V   ++ + 
Sbjct: 295 KALLSLINNILDLSKIESGHMKVELHPLHFKPFLREIMNMFIEPGKKKGLEVTYEIEKNL 354

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLAR 159
               I       +IL NL   A     +G        T S  +   + IFS+K  G    
Sbjct: 355 PEWIIADEIRIRQILFNLISNAIKFTEKGSVRLSVLSTPSKNEGFVDLIFSIKDTGIGIS 414

Query: 160 FPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +          DG          +       LA   K  +  E         +  +
Sbjct: 415 PKNQIKIFDAFIQNDGQDSRQFGGTGLGLAICRKLAQLMKGDITIESQLGQGSEFTFTI 473


>gi|262277330|ref|ZP_06055123.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
 gi|262224433|gb|EEY74892.1| periplasmic sensor hybrid histidine kinase [alpha proteobacterium
           HIMB114]
          Length = 998

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K      +      L  + + H++ +P+ AI    E+L E   +++  + I         
Sbjct: 498 KEEAEQANKAKSAFL--ANMSHELRTPMNAIIGYSEILTEDATDNQHQEYIPDLKKINSA 555

Query: 63  -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVSW 104
                      + ++    G ++  I   +   + ++                  ++   
Sbjct: 556 GKHLLQLINDILDISKIEAGKMELDIQDINFTSLAQEVADTSDALVTKNGNTLKIIKDES 615

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE 162
                  S +  +IL NL   A      G       + QD  N     ++  G      +
Sbjct: 616 IQGITGDSVKIKQILFNLISNAAKFTENGTITLGYKTYQDDNNFLSIYVQDTGIGIEKDK 675

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +                +    V   +      +  E         +  + K
Sbjct: 676 AAKVFEEFGQADSSTTRKYGGTGLGLSLVKKFSELMGGSIKLESEIGKGSTFTVTIPK 733


>gi|260598667|ref|YP_003211238.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Cronobacter turicensis z3032]
 gi|260217844|emb|CBA32357.1| Sensor kinase protein rcsC [Cronobacter turicensis z3032]
          Length = 703

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 71/240 (29%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 207 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTQELPKGVDRLVTAM 266

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
             S+ + LK +     ++      + +   E    + ++                    +
Sbjct: 267 HNSSSLLLKIISDILDFSKIESEQLKIEPREFSPRELMSHITANYQPLVVRKQLGLYCFI 326

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +       +       +++ NL   A       G + + V    +   F ++  G     
Sbjct: 327 EPDVPMTLLGDPMRLQQVISNLLSNAIKFTDI-GCIILHVGTQGDYLCFRVRDTGVGIPA 385

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +         +  + 
Sbjct: 386 KEVV-RLFDPFFQVGTGVQRNFQGTGLGLAICEKLINMMDGDISVDTETGMGSQFTIRIP 444


>gi|223043250|ref|ZP_03613297.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus capitis SK14]
 gi|222443461|gb|EEE49559.1| sensor protein SrrB (Staphylococcal respiratory responseprotein B)
           [Staphylococcus capitis SK14]
          Length = 588

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 52/217 (23%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          + + ++   S      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLGVVLDESKRLNRLVNELLNVARMD 423

Query: 74  -----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                                       +D     +    +             ++L NL
Sbjct: 424 AEGLSVEKEVQPIKNLLDKMKAKYRMQADDLGLTMEFNSGNDHLLWDYDMDRMDQVLTNL 483

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID-- 177
              A      G  + ++    +  NI  +   G         + F +    +        
Sbjct: 484 IDNASRYTQPGDAIAVTASKDEQYNILYISDTGTGIAPEHLQQVFDRFYKVDASRKRGKQ 543

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   ++  E+  ++  +            L 
Sbjct: 544 GTGLGLFICKMIIEEHGGQIDVKSELGKGTTFIIKLP 580


>gi|261405267|ref|YP_003241508.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261281730|gb|ACX63701.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 629

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 63/223 (28%), Gaps = 10/223 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLI 53
           M  N       M++++ L + + H++ +P+      L+LL       +   ++  +++L 
Sbjct: 404 MFNNELQRSEKMEIISELAASVAHEVRNPLQVTRGFLQLLTGKAQSTEREYLDLALVELD 463

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDL 111
           R S +               T    S         +         R+ V           
Sbjct: 464 RASGIITDFLTFAKPEFGKDTVLRISEEFKHIEGILGPLAHLQGGRITVDIPEDITIRGN 523

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           S +  +  +N+   +  +L   G V I     + +    +  NG     P+   ++ +  
Sbjct: 524 SSKFKQAFINIVKNSIEALGDEGLVHIRCYRQQGQVFIHVVDNGEGM-GPDVLARLGEPY 582

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +               L 
Sbjct: 583 FSNKTKGTGLGLMVTFRIIEAMDGDIYFTSKQGVGTDAVITLP 625


>gi|170701268|ref|ZP_02892235.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
 gi|170133827|gb|EDT02188.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria IOP40-10]
          Length = 1276

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 23/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
           +R+ H+I +P+  +    ELL    +  +  + +     S    L  +     ++     
Sbjct: 568 ARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627

Query: 78  ---------DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123
                    +    L D+  ++E            +   S             +IL NL 
Sbjct: 628 KLTLERIDFNLHQLLDDVVALMEPNARRKELELVYQRADSVPQRMRGDPVRLRQILTNLL 687

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A      G     +        +F +  +G     P+   Q+     +          
Sbjct: 688 GNAIKFTEHGHVGLSAAYSDDGRIVFKIADSGIGI-APDVAAQLFRPFQQADSSTARKYG 746

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       LA      L  +       V +    
Sbjct: 747 GTGLGLVISRQLAEMMGGTLTLDSTPGKGSVFTVTTP 783


>gi|126651422|ref|ZP_01723626.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126591675|gb|EAZ85771.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 466

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 58/215 (26%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +PI  I    ++L +  +  +  Q      +    RL  +         +D 
Sbjct: 239 SSIAHELRTPITFIKGYTDILYKRDLSVQDRQKYLAIILEETNRLSRLIKDLFDLAKMDE 298

Query: 80  LIGLGDIEQVIEDFIA---------------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124
              + + + +                     +   V                +I++NL  
Sbjct: 299 NSFVIEKQNLDLQAFFTGIKGKLSPAFQEKDIHFDVCCEKGLTLWADEARLEQIIINLLN 358

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSH 179
            A     +G   T+ V+         ++  G      +    F +      +    +   
Sbjct: 359 NALTYCGQGDTTTVDVKKVNGVLTIIIRDTGRGIPNKDLPFIFERFYRVEKSRSRALGGT 418

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  L   +   +  +   +   V     +
Sbjct: 419 GLGLAIVKELVQAHGGEVTVKSELNKGTVFELSFK 453


>gi|108801552|ref|YP_641749.1| periplasmic sensor signal transduction histidine kinase
           [Mycobacterium sp. MCS]
 gi|119870706|ref|YP_940658.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
 gi|108771971|gb|ABG10693.1| periplasmic sensor signal transduction histidine kinase
           [Mycobacterium sp. MCS]
 gi|119696795|gb|ABL93868.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. KMS]
          Length = 473

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 58/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   +M  I   S    + ++ + L           
Sbjct: 254 SHELRTPLTTIRGFAELYRQGAARDVEMLMNRIESESRRMGLLVEDLLLLARLDAQRPLE 313

Query: 81  IGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILLNLFMVAHAS 129
               D+  +  D +   + +               T E +       ++L NL   A   
Sbjct: 314 RHRVDLLALATDAVHDAQSIAPERTITLQVLDGPGTPEVVGDEARLRQVLGNLVANALQH 373

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDSHDIQFY 184
            P+   +T+ V   +   +  +   G      +    F +    +           +   
Sbjct: 374 TPKHAGITVRVGTDETNAVLEVCDEGPGMTEEDARRVFERFYRTDSSRARESGGTGLGLS 433

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +            +  L +
Sbjct: 434 IVDSLVLAHGGTVRVTTAPGQGCRFTVHLPR 464


>gi|55377011|ref|YP_134861.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55229736|gb|AAV45155.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 726

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 53/197 (26%), Gaps = 7/197 (3%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + HD+ +P+      LELL E    + +  +         +    + LA       
Sbjct: 528 FASVVSHDLRNPLTVARGQLELLREESDSEHIDAIDTAHQRMDTLIDDLLTLARDGASPA 587

Query: 78  D--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
               +     ++   ++       ++               ++  NL   A         
Sbjct: 588 SPVVVDLEQFVQTCWQNVDTKAATLRTDIDRPIRADESRLRQLFENLVRNAVEHGGDDVS 647

Query: 136 VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI 195
           VT+          F ++ NG     PE+   +      + ++        V  +A  +  
Sbjct: 648 VTVGELADG----FYVEDNGAGIPEPERGD-VFSAGYSTAVEGTGFGLSIVKQVADAHGW 702

Query: 196 RLLPEIIDDHNVVLSAL 212
            +      D        
Sbjct: 703 TVRVVSGADGGARFEFT 719


>gi|116622312|ref|YP_824468.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116225474|gb|ABJ84183.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 781

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 64/243 (26%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53
           A+     +  ++ + LL   I HD  + + ++  +  L  E       +        Q  
Sbjct: 400 AEERLREVQKLESLGLLAGGIAHDFNNLLVSVIGNASLAQERLPAGHPLVELLERVVQSG 459

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++      L +         +++    + D+  V+++ I+    +          +  
Sbjct: 460 HQAAHLTNQMLAYSGKGKFLVETLNLSALIADMGFVVQESISPRIAIHFQLEENLPPIEA 519

Query: 114 E---RAKILLNLFMVAHASL-------------------PRGGKVTISVQDSKNENIFSL 151
           +     ++ +NL   A  ++                       +               +
Sbjct: 520 DRGQMKQVFMNLATNAADAIGSRDGLIIVKTGIRNVDGQFIQRRQEARDLMPGRYVYLDV 579

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             +G          +I D    +      +    V  +   +K  +            + 
Sbjct: 580 SDSGCGM-DEATRARIFDPFYSTKFMGRGLGLAAVGGIVRGHKGTVTVSSQPGQGSCFTV 638

Query: 212 LLE 214
           LL 
Sbjct: 639 LLP 641


>gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1172

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 19/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQL 52
            K     L +  L       I H+  +P+  +   LE          L+   I     + 
Sbjct: 523 RKQAERLLEADRLKTEFFQNISHEFRTPLTLMIGLLEEAVNYQQDLPLESSAIALRNSRR 582

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110
           +       +   +        +    SL+ L              K + +          
Sbjct: 583 LLRLVNQLLDLQRLDAGRMQPSFRPCSLVDLCRNIVESFTPYCQKKELSLVTDFSDTCLL 642

Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-- 165
                 +  K++ NL   A    P GG + IS++ S+   +  ++  G   R  +     
Sbjct: 643 VYLDVEKFDKVIYNLLSNAMKFTPAGGSIRISIESSQEYCLLKVEDTGIGIRQEQIPFLF 702

Query: 166 ---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +  +G+   + +   +    V  L   +  ++  E +          
Sbjct: 703 QRFRQAEGSANRSYEGSGLGLALVKELVELHGAQISVESVYGQGTTFKVW 752


>gi|329926967|ref|ZP_08281367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328938797|gb|EGG35173.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 490

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------ 48
           + ++I   L   +    L S I HD+ +PI  I   +E + +   +              
Sbjct: 245 LHESIQLRLRDEENRKELISNISHDLRTPITNIKGYVEGIRDGVADTPEKMDKYVNIIYT 304

Query: 49  -VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQV 102
             + L +L     +     ++        VD +  + D        +       + + + 
Sbjct: 305 KTIDLDKLVDELFLYSKLDLKQVPFMFEHVDIIGFIDDCIDEQRYVLEEKDILLEWKERP 364

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF- 160
               E I    +  + +LN+   A   + +    + +S++ S       ++ NG      
Sbjct: 365 GDPVEVIADLEKLKRTVLNIIGNAQNFMDKGQKNIGVSIRLSPEWVTVEIRDNGTGIAPE 424

Query: 161 --PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             P  F +                +       +   +  ++  E        L   L++
Sbjct: 425 AIPYIFERFYRAEPSRNSSTGGSGLGLAIASQIIEGHGGQIWAESELGVGTSLYFTLKR 483


>gi|319942263|ref|ZP_08016578.1| nitrogen metabolism transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804136|gb|EFW01036.1| nitrogen metabolism transcriptional regulator [Sutterella
           wadsworthensis 3_1_45B]
          Length = 385

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           +         +     + L   + H+I +P+G I  + +LL+   + DE  +   +    
Sbjct: 131 LRAERDAIAEAGRAANSELLRNLAHEIKNPLGGIRGAAQLLESELVRDEDRECTNVILEE 190

Query: 60  AIIRLKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           A    + +               V+    L  +  +I    A    ++  +      +  
Sbjct: 191 AARLQELVDRLLMPYRTPAAAGPVNIHEVLEHVRSLIGLEFAQGLTIERDYDISAPAVFG 250

Query: 114 E---RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKING 155
           +     ++ LNL   A  ++                    V ++   ++      +  NG
Sbjct: 251 DRGRFTQVFLNLARNAAEAMTEGRAHGTAVIIFKTRIARDVMLAGTRTRTALRIDVVDNG 310

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +I    V    +   +    V     E    +  E         + LL 
Sbjct: 311 PGV-PEHLKERIFFPLVTGRAEGSGLGLALVKTFVEEAGGSITLESRPGR-TDFTVLLP 367


>gi|297569538|ref|YP_003690882.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925453|gb|ADH86263.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 648

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 66/227 (29%), Gaps = 25/227 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMSAIIRLKFMRL 69
            +L     + + H++ +PI +I    E L +  +++     +   +    +      +  
Sbjct: 407 ENLRRDFVANVSHELKTPITSIEGFAETLLDGALDEPEQARRFTTIILQQSRRLHAIIED 466

Query: 70  AFGYTGSVD--------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +                              +   A +  ++V  +          
Sbjct: 467 LLALSRIEQEGKRRATELAELPVLETLQVAARTCADRAAAREITLEVDASPTLRAWINPA 526

Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
              + L+NL   A      G  + IS Q + +E + S+   G      E   ++ +    
Sbjct: 527 LLEQALVNLIDNAIKYGHAGRPIKISGQPAGDEILLSVSDQGPGI-PSEALPRLFERFYR 585

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +++    +    V  +A  +  R+    + +     +  L 
Sbjct: 586 VDKARSTSLGGTGLGLSIVKHIAQAHGGRVGVHSVLNRGSTFTLYLP 632


>gi|228932680|ref|ZP_04095554.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826998|gb|EEM72758.1| hypothetical protein bthur0009_11560 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 466

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKICILTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    S+K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWQIESEKGNGTTVSIKLK 458


>gi|254444627|ref|ZP_05058103.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258935|gb|EDY83243.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 561

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 68/239 (28%), Gaps = 30/239 (12%)

Query: 5   ICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL-- 55
               +S+ ++        +   + + H++ SP+  +    +L+++   E    ++     
Sbjct: 178 REELISAKEMAERTNAYKSEFLANMSHELRSPLNCVIGFSDLIEQDVEEKCFERIGEYAG 237

Query: 56  -----------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                           +   +              L  L ++   +    A +KR+ +  
Sbjct: 238 LIKAAGKHLLGMITEILDLARIDTGKMRLEKREVHLDELLELIASMLKLPAREKRLSIEL 297

Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             + I    +     ++L NL   A      G ++ +S Q         +   G     P
Sbjct: 298 DCDPIRFEADERRLHQVLHNLLSNAIKFSSEGSRIGVSAQGQGEIVEIVVWDEGRGI-AP 356

Query: 162 EKFTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I +   +             +    V  +   +  ++  E         S  L 
Sbjct: 357 DWLDRIFEPFEQVESGDSELGEGAGLGLAIVKRIVDLHGGQVSVESELGVGSRFSVRLP 415


>gi|167826595|ref|ZP_02458066.1| two-component system sensor protein [Burkholderia pseudomallei 9]
          Length = 923

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 420 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 479

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 480 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 539

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 540 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 599

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 600 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 659

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 660 TVTVALP 666


>gi|220919461|ref|YP_002494765.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957315|gb|ACL67699.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 646

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-------------GI 45
           +       L +  L AL  L + + H++ +P+ AI   L +L                  
Sbjct: 408 LKTAQDQILRTRRLAALGSLGAGLAHELNNPMTAIVGYLAILKRELPAGSAHAEMIGRAQ 467

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           E        +  + +    +       ++        L   E  +               
Sbjct: 468 EQTARVARVVEDLRSFADQERSMQGRRFSLVAPVRAALALYEDRLRAAGIELTTRFDERL 527

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF 164
            +      +  +++ +L   A  ++PRGG + +S            +   G         
Sbjct: 528 PDAQGDPVQIQQVVAHLVENAINAMPRGGSLEVSLGTVDGEALRLRIADTGKGIPVT-IR 586

Query: 165 TQIVDGNVEST-IDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   +  R++ E  +     ++ LL 
Sbjct: 587 ERIFDPFFTTKEHPGRVGLGLSVSHSIVEAHHGRIVVESEEGAGAAITVLLP 638


>gi|126437537|ref|YP_001073228.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. JLS]
 gi|126237337|gb|ABO00738.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium sp. JLS]
          Length = 473

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 56/211 (26%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   +M  I   S    + ++ + L           
Sbjct: 254 SHELRTPLTTIRGFAELYRQGAARDVEMLMNRIESESRRMGLLVEDLLLLARLDAQRPLE 313

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----------LSRERAKILLNLFMVAHAS 129
               D+  +  D +   + +    T                      ++L NL   A   
Sbjct: 314 RHRVDLLALATDAVHDAQSIAPERTITLHVLDGPGTPEVVGDEARLRQVLGNLVANALQH 373

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDSHDIQFY 184
            P+   +T+ V   +   +  +   G      +    F +    +           +   
Sbjct: 374 TPKHAGITVRVGTDETNAVLEVCDEGPGMTEEDARRVFERFYRTDSSRARESGGTGLGLS 433

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +            +  L +
Sbjct: 434 IVDSLVLAHGGTVRVTTAPGQGCRFTVQLPR 464


>gi|158520884|ref|YP_001528754.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158509710|gb|ABW66677.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 905

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 68/237 (28%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
           + +     +      AL  + S I HD  + + +I    +LL        +  +    + 
Sbjct: 525 LRQAQRRFVDQERQRALSQMASGIAHDFNNALSSIQGFSDLLLQSPEKFSDTPLVKRYVG 584

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKR------- 99
           LI  ++  A   ++ +R  +  +       VD    + +   + E       +       
Sbjct: 585 LINTAARDAAQVVRRLRKFYRPSDEETIEPVDVNRLIKEAVALTEPVWKHKTQARGAPII 644

Query: 100 --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
              +            E  ++L NL   A  ++P GG ++   +      +  +   G  
Sbjct: 645 VETRFQEQLSASGNRTELNEVLTNLIFNAVDAMPEGGSLSFGTRREAGWIVLEVSDTGVG 704

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +             +    V  +   ++ ++       +       + 
Sbjct: 705 MDATVRRQCMNPFFTTKGEAGSGLGLATVQGIVARHQGQIEIVSEPGNGTTFVLRIP 761


>gi|59711903|ref|YP_204679.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
 gi|59480004|gb|AAW85791.1| hybrid sensory histidine kinase [Vibrio fischeri ES114]
          Length = 692

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 25/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIED-------EV 49
           AK      +     +   + + H+I +P+ +I   ++     LL E  ++          
Sbjct: 317 AKTEAEKANKAK--SQFLAMMSHEIRTPLNSILGLVDVFHSSLLSEEQLDWLNQMESSSQ 374

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           + L  +S +  I R++                    I  +          + V+ +    
Sbjct: 375 LLLTIISDVLDISRIEAGTFVLNEQPIDLLRSLNTSINFLDTRAKDKGITLTVTASQNVP 434

Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     ++++ NL   A      G       +   N    S+   G          
Sbjct: 435 KYVFADATRLSQVIFNLVGNAIKFTNHGHVAVKIEKLPNNSISISVSDTGIGIASTTL-E 493

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           Q+          +        +    +  L    +  +  E   +        L 
Sbjct: 494 QLFKPFVQADSSITRKYGGTGLGLAIIKRLVELMQGTITVESRLNIGSTFKITLP 548


>gi|118578862|ref|YP_900112.1| GAF sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
 gi|118501572|gb|ABK98054.1| GAF sensor signal transduction histidine kinase [Pelobacter
           propionicus DSM 2379]
          Length = 458

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 63/233 (27%), Gaps = 21/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57
           +       +    L A+  + +++ H++ +P+  I      L+  +  E    +   + S
Sbjct: 226 LRDARERLIRGERLAAVGEMAAKLAHELKNPLITIGGFSWRLIKNLATESPEYRYADIIS 285

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGL----------GDIEQVIEDFIAVDKRVQVSWTGE 107
                  + +     +T                      E         +  +  S++G 
Sbjct: 286 KEVCRLERMLTDILSFTSKPMVCFDYGNCDLEEILGECFEVSSTPLEENNVSLTTSFSGG 345

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFP 161
              +  +  ++      +   +                V   KN  + S+   G     P
Sbjct: 346 PWIVLGDAHQLKQVFLNLILNACECMTDGGALEIGLQKVFLDKNSVMISISDTGGGIH-P 404

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D    +      +    V  +   +   +  E  +    V +  L 
Sbjct: 405 DMLPRIFDPFFTTKPQGSGLGLAIVKRIMLNHNGSIDVENGE-RGAVFTLTLP 456


>gi|315181590|gb|ADT88503.1| Periplasmic Sensor Hybrid Histidine Kinase [Vibrio furnissii NCTC
           11218]
          Length = 807

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 60/236 (25%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           K+      + ++  +   S I H+I +P+ +I     LL    + +E    +     S  
Sbjct: 459 KDAKLQAENANMAKSQFISNISHEIRTPMNSILGMSHLLMTSNLSEEQRNHLITIDKSGK 518

Query: 62  IR----LKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKI 109
                    + ++    G VD      D         +           ++ +       
Sbjct: 519 HLLSLINDILDMSKIDAGKVDIEEIPFDLAALVYDVHDIFEYKAKKHGVKLHLDLDKSLP 578

Query: 110 D---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
                     +I+LN    A     +G           +E       S++ NG      +
Sbjct: 579 PLLGDPFRIKQIMLNFVSNAIKFTEQGDVTIRVQGAVTSESVFALRLSVEDNGIGLSADD 638

Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +          D +         +       +AH     +  E            L
Sbjct: 639 QMKVFESFQQADASTTRKYGGTGLGLAICKRIAHLMGGEVGVESRLGDGSTFWLTL 694


>gi|218550493|ref|YP_002384284.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ATCC 35469]
 gi|218358034|emb|CAQ90680.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia fergusonii ATCC 35469]
 gi|324115186|gb|EGC09150.1| hsp90-like protein [Escherichia fergusonii B253]
 gi|325498791|gb|EGC96650.1| aerobic respiration control sensor protein ArcB [Escherichia
           fergusonii ECD227]
          Length = 778

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 57/229 (24%), Gaps = 26/229 (11%)

Query: 10  SSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
            +++  +       S I H++ +P+  I     +L +  +  E  + ++   +SA+    
Sbjct: 274 DALEQASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLNAEQEKYLKTIHVSAVTLGN 333

Query: 66  FMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKI 109
                          + L +                  Q  +  +       +    + I
Sbjct: 334 IFNDIIDMDKIERRKVQLDNQPIDFTGFLADLENLSGLQAQQKGLRFVMEPTLPLPHQVI 393

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++L NL   A     +G        D      F +  +G      E+      
Sbjct: 394 TDGTRLRQVLWNLISNAVKFTQQGKVEVRVRYDKGEMLHFEVADSGIGIPQEEQDKIFAM 453

Query: 170 GNVESTI------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                            I       LA +    +    +     V +  
Sbjct: 454 YYQVKDSQGGKPATGTGIGLAVSRRLARDMGGDISVSSVPGQGSVFTLT 502


>gi|118476874|ref|YP_894025.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196046439|ref|ZP_03113664.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225863262|ref|YP_002748640.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|229183592|ref|ZP_04310815.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1]
 gi|118416099|gb|ABK84518.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|196022623|gb|EDX61305.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|225787926|gb|ACO28143.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|228599835|gb|EEK57432.1| hypothetical protein bcere0004_11640 [Bacillus cereus BGSC 6E1]
          Length = 466

 Score =  112 bits (280), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    S+K  G             +    +          
Sbjct: 364 NAIRYTHQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKLK 458


>gi|320354510|ref|YP_004195849.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123012|gb|ADW18558.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1001

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 71/244 (29%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
            K     + S  + A+  L   I HD  + +GAI    E+  E      +  + +  +  
Sbjct: 613 RKLQTQLIQSQKMEAIGTLAGGIAHDFNNILGAILGYTEMAREIISLDPMASKYLDRVNE 672

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           ++  A   +K +        S          + +  +++   +     ++ +       +
Sbjct: 673 AANRASDLVKQILEFSRQVESKRVSLFPIYIVKEAIKLLRPSLPSTILIRQNLETSVWPI 732

Query: 112 SRER---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLK 152
             +     +IL+NL   A  ++ +                     +S          +++
Sbjct: 733 IADPTQVHQILVNLCTNAFHAMEKTGGVLEITLQNRELVESDVQHLSEIQPGKFVELAVR 792

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+     E   +I D    +        +    V  +   ++  ++ +       V  
Sbjct: 793 DTGDGI-SSEIRDKIFDPFFTTKSVGKGTGMGLSIVHGIVTSHEGFIICDSERGKGTVFR 851

Query: 211 ALLE 214
               
Sbjct: 852 VYFP 855


>gi|307543661|ref|YP_003896140.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
 gi|307215685|emb|CBV40955.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
          Length = 697

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 59/234 (25%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           + +     + S  L A+  + + + H+I +P+  I  +L++  +              LI
Sbjct: 461 LERTTEQLVMSEKLAAVGEITAGVAHEINNPVAVIQGNLDVARQSLGSRVDEVATEFDLI 520

Query: 54  RLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                     +  +               +     + D   +     +            
Sbjct: 521 DDQVHRISAIISKLLQFARPGEFSGSANRLVPAEVIDDCLVLTRHLSSKAGVTVERDDRS 580

Query: 108 KIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160
              +     E  ++++NL + A  ++P GG +T+  +D            +   G     
Sbjct: 581 MASILVERTELQQVIINLVVNAIHAMPEGGTLTLETEDRDVEGVPGVAIIVTDTGRGMMP 640

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +       L       +     +      +  + 
Sbjct: 641 EVLKRIFDPFFTTKRSQGTGLGLSISQTLMGRAGGWIEAASEEGAGSRFTVWIP 694


>gi|291546652|emb|CBL19760.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Ruminococcus sp.
           SR1/5]
          Length = 224

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/206 (10%), Positives = 58/206 (28%), Gaps = 13/206 (6%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---RLKFMRLAFGYTGS 76
           S+  H++ +P+  I++ L+++     + +  +       +       L  +         
Sbjct: 19  SKFSHELRNPLTLINSGLQMIASAHPDVKEYEHWDDVMDNLDYVKELLDELSAFNNAGHV 78

Query: 77  VDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHA 128
               I      +     +      ++  ++         ++ +R ++   L      A  
Sbjct: 79  KRENIDTCSYLRTILSSIKPTLDYLEITLETDIPDSLPSMALDRIRVRQMLLNLLKNAWE 138

Query: 129 SLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
           ++P  G         +N      ++ NG      E+   I      +      +      
Sbjct: 139 AVPIPGGKISFSVIPENSGIRIDIRDNGCGI-SKEQQATIFQPFFTTKESGTGLGLAVSK 197

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALL 213
            +A  +   +  E       V    L
Sbjct: 198 QIAQAHSGDITLESTPGQGTVFHIFL 223


>gi|282895997|ref|ZP_06304028.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9]
 gi|281199107|gb|EFA73977.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9]
          Length = 642

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 74/235 (31%), Gaps = 28/235 (11%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------RLSSMS 59
             +  ++ +  L S I HD+ + +  I  + ++L+    +++  QLI       +  +  
Sbjct: 263 LRVQRLESIGTLASGIAHDLNNVLTPILMTAQILETQVKDEKPRQLIPILIANAKRGANL 322

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116
               L F R   G    +     L +I+ VI++       +          +  +     
Sbjct: 323 VKQVLSFARGMEGERTILQIKHLLIEIQNVIKETFPQSIILTTEIPQSLWTVCGDATQLH 382

Query: 117 KILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++L+NL + A  ++P                    T +        + S+K  G   +  
Sbjct: 383 QVLMNLCINARDAMPNGGTLSIKSENLLIDDHYIQTHTDLKPGAYVLISIKDTGVGIKPT 442

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I +    +        +    V+ +   +   +     ++        L 
Sbjct: 443 -LIDRIFEPFFTTKNVAQGTGLGLSTVLGIVKAHGGFINVYSRENKGSEFQVYLP 496


>gi|193215934|ref|YP_001997133.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
 gi|193089411|gb|ACF14686.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
            ATCC 35110]
          Length = 1215

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 67/235 (28%), Gaps = 23/235 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS 57
             +     +  ++ +  L   I HD  + +  I   + L    LD+       +     + 
Sbjct: 835  TEQELHRMEKLESIGTLAGGIAHDFNNLLMGIFGKISLAKTALDKTHPAARYLDGAEQAM 894

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
              A    K +         +   + + ++ + I  F      V+  +   +     +   
Sbjct: 895  NRATRLTKQLLTFSKGGAPLKEHVNIFELVEEITRFDLSGSNVKALFNQPQNLWLADVDK 954

Query: 115  --RAKILLNLFMVAHASLPRGGKVTISVQDS-------------KNENIFSLKINGNLAR 159
                +   NL + A  ++PRGG + I+ ++                    +++  G    
Sbjct: 955  GQIQQAFSNLIINASQAMPRGGHLYITFENRDVTNANKEPNLEAGKYVKITVQDEGVGID 1014

Query: 160  FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   I D    +      +       +  ++   +  E        ++  L 
Sbjct: 1015 KKNI-DYIFDPYFTTKQSGSGLGLTTTYSIIKKHGGTIHVESELGVGTSVTLFLP 1068


>gi|189464191|ref|ZP_03012976.1| hypothetical protein BACINT_00528 [Bacteroides intestinalis DSM
           17393]
 gi|189437981|gb|EDV06966.1| hypothetical protein BACINT_00528 [Bacteroides intestinalis DSM
           17393]
          Length = 479

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 69/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSKS 301

Query: 56  SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              +A                    +++    T  ++ +       QV  D   +   V+
Sbjct: 302 IKENADRLLGITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVE 361

Query: 102 VSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       S + A +L NL   A       G+V I  +         ++  G    
Sbjct: 362 YPDEKMPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKHEDGIIEMYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVIRLK 478


>gi|182678849|ref|YP_001832995.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634732|gb|ACB95506.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 652

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 67/232 (28%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
           + +     L    L  +  L + + H++ +P+GAI N++  L E         D  +  +
Sbjct: 414 LVQAQEDLLKKERLSTIGQLTATVAHELRNPLGAIKNTVFTLKELSGAKNLKLDRPIARM 473

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEK 108
             S       +  +      +               + D +AV   + V           
Sbjct: 474 ERSVDRCNSIITHLLEYSRVSALKYECRDFDQWLVDVLDELAVPPTITVERVLAARDRNC 533

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ------DSKNENIFSLKINGNLARFPE 162
                   ++++NL   A  +L   G      +       +      ++   G      E
Sbjct: 534 AFDPERLRQVIVNLVENAIHALNDVGAERPEKRLRLSTRQNAGTIELTIADTGPGI-AAE 592

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             T++ D    +      +    V  +  ++   +           ++ ++ 
Sbjct: 593 NLTRVFDPLFSTKSFGTGLGLPAVKQIVEQHGGTITLASTLGQGTEVTVVIP 644


>gi|170738563|ref|YP_001767218.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168192837|gb|ACA14784.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 708

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +++    S  +  ++      + + H+  +P+  I    +L+ E  +  E    IR    
Sbjct: 190 RSLDEARSRAEAASVAKSRFLATVSHEFRTPLNGILGMADLVLETPLSPEQETYIRAIKT 249

Query: 59  SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQV 102
           S           +  +    G +D      D   ++E  +             +   +  
Sbjct: 250 SGEALLTLIDGILDFSKIEAGRLDLACEPFDPAALVESVVELLAPRAQDKGLEIAADLAD 309

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +       +ILLNL   A      GG    + +  ++    ++   G       
Sbjct: 310 DLPPRVLGDGDRVRQILLNLAGNAVKFTEAGGVGITAERVGEDLV-LAVHDTGPGIPEER 368

Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      DG+     +   +       L      R+              +L 
Sbjct: 369 LPLLFEEFEQGDGSASRRHEGTGLGLAITRRLVDRMGGRIETTSRPGAGSCFRVVLP 425


>gi|153955726|ref|YP_001396491.1| sensor kinase [Clostridium kluyveri DSM 555]
 gi|219856095|ref|YP_002473217.1| hypothetical protein CKR_2752 [Clostridium kluyveri NBRC 12016]
 gi|146348584|gb|EDK35120.1| Predicted sensor kinase [Clostridium kluyveri DSM 555]
 gi|219569819|dbj|BAH07803.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 321

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 69/241 (28%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
            +N      S  L   +    S I H++ +P+  I  ++++L      ++    ++  + 
Sbjct: 41  ERNTELLNESQKLNKNITEFISDISHELKTPLNVIFAAIQVLAACKSCEDQKCINKRDEY 100

Query: 53  IRLSSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           +++   +    +K +                         I       ++    +    +
Sbjct: 101 LKIMKENCYRLMKLINNLLDISKLDSGFIRLNCHNENVVSIVEDIALSLVPYVESKGIEL 160

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                 E+  ++ +     +I+LNL   A    P  GK+ ++VQ         +K  G  
Sbjct: 161 IFDTNVEEKIMAVDSDKMERIILNLLSNAVKFTPPEGKIYVNVQCDDENVYIVVKDTGIG 220

Query: 158 ARFPE---KFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +    F +               I  Y        +   +  +         +  L
Sbjct: 221 IPEDKLKVIFERFGQAGSTVEENQGSGIGLYLAKSFVCLHGGEISVKSSRGGGSEFTVRL 280

Query: 214 E 214
            
Sbjct: 281 P 281


>gi|90577498|ref|ZP_01233309.1| sensor protein LuxQ [Vibrio angustum S14]
 gi|90440584|gb|EAS65764.1| sensor protein LuxQ [Vibrio angustum S14]
          Length = 576

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 61/217 (28%), Gaps = 24/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---------------- 63
           + I H++ +P+  +  + ELL +  ++++  +L+   + S  +                 
Sbjct: 219 AMINHELRTPLNGLLGAAELLQDTPLDNDQQKLLTTLNHSGELLRAIINDLLDYSKINAG 278

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           +  +         +   +      +  E  +  +           I       +I +NL 
Sbjct: 279 MLELIEKPFDCHLLAVKLEDIFTHRSHEKRLDFNIYYSNDLPKIFIGDEDRIKQIFVNLI 338

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A    P  G V   +        F++K +G          ++     +       + +
Sbjct: 339 SNAIKFTPA-GFVHAKLWWQNKHLQFTVKDSGCGI-DHSDQHKLFKPFSQVDNTSKRSHE 396

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L  +    +  E         +  L 
Sbjct: 397 GTGLGLVICKQLCEQMGGSIRVESSLGRGACFNVSLP 433


>gi|75910897|ref|YP_325193.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75704622|gb|ABA24298.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1274

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 75/251 (29%), Gaps = 40/251 (15%)

Query: 2    AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49
              N    +S+ +L           + + H++ +P+ AI    E L E         + + 
Sbjct: 868  QSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINDKQFKA 927

Query: 50   MQLIRLSSMSAIIRLKF-------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
            ++ I  SS   +  +               +        ++     +   +Q ++  I V
Sbjct: 928  LETIERSSSHLLDLINDILDVAKIEAGQIKLDCTAISVAALCQSSLVFIKQQALQKRIQV 987

Query: 97   DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG-------GKVTISVQDSKNENIF 149
            + ++ ++     +D      ++L+NL   A    P          +V+  +   +N    
Sbjct: 988  EIKIPLNLPDLFVDER-RIRQVLINLLNNAVKFTPETGRISLEVTQVSPDISTVQNFLQI 1046

Query: 150  SLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
            ++   G      E   ++    +          +   +    V  +   +  R+      
Sbjct: 1047 AVIDTGIGIM-QENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTSEL 1105

Query: 204  DHNVVLSALLE 214
                  +  L 
Sbjct: 1106 GVGSCFTIELP 1116


>gi|115523889|ref|YP_780800.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
 gi|115517836|gb|ABJ05820.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisA53]
          Length = 615

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 64/246 (26%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L              +   + + H++ +P+ AI    E++ +        +  
Sbjct: 333 RKQQELALEQARAEAARADASRSRFLATVSHELRTPLNAIIGFSEMIVQEQALMISAERR 392

Query: 54  RLSSMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----- 97
           R  +                 L   ++  G    +              + +A+      
Sbjct: 393 REYAQLINDSGQHLLSVVNGILDMSKMDSGNFEILPEPFAPRPALLNCCNLLALKARDSG 452

Query: 98  ---KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
                       E     R   +I+LNL   A     RGG VT+S           +   
Sbjct: 453 IDLVTRAPDDLPEVNGDPRAFKQIVLNLVSNAIKFTERGGTVTVSAAVEGAHLALRVVDT 512

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      +   +I D         +   +   +    V  L   +   L      D    
Sbjct: 513 GVGIAADDL-ERIGDPFFQAGKTYQRRHEGTGLGLSIVKTLVALHGGELTVASQLDKGTT 571

Query: 209 LSALLE 214
           ++A+L 
Sbjct: 572 VTAMLP 577


>gi|296160597|ref|ZP_06843412.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. Ch1-1]
 gi|295889123|gb|EFG68926.1| Osmosensitive K channel His kinase sensor [Burkholderia sp. Ch1-1]
          Length = 944

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 63/238 (26%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++   N+ S  L   L S I HD+ +P+  I     +L +        +L+      A+
Sbjct: 668 ARDALVNMESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSPDAQPNAELVEAIHEEAL 727

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDL 111
                +             + L     +              +  +  VQV    +   L
Sbjct: 728 RMTGIVTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLANHPVQVKLPADLPLL 787

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA---RFP 161
             +     ++  NLF  A         +TI  Q       +    ++  NG         
Sbjct: 788 HLDAVLMERLFSNLFENAAKYTAPATPLTIGAQRLDADGKSFVRVTVDDNGPGLPAGMEA 847

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP---EIIDD--HNVVLSALLE 214
             F +   G  ES      +       +   +   +        D           L 
Sbjct: 848 RVFEKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIGALNRVSADGHVEGARFWFTLP 905


>gi|294805707|ref|ZP_06764586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|294447030|gb|EFG15618.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1333

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69
             I H+  +P+  I + LE+L E      +    +  I  +++     +  +       + 
Sbjct: 820  NISHEFRTPLTLIVSQLEMLMERNDIQPLVYGKLVGIHRNTLRMKRLITELLDFRKQEQG 879

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKILLNLFM 124
               +  S   +    D   +     A  K++   +  +           +  K++ NL  
Sbjct: 880  FEKFKYSKQDIYSFLDEIYLSFKEYARGKQIIFEYFNKDRSLDVWFDVVQLEKVIYNLLS 939

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181
             A    P GG V++SVQ+ +N  +  +   G         + F +    +         I
Sbjct: 940  NAFKYTPLGGTVSLSVQEYENSVMILISDTGIGIAEENLNKIFDRFYQVDSLDNQKGTGI 999

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +K ++     +         L 
Sbjct: 1000 GLALAKSIIEAHKGKIGARSREGKGTTFVVELP 1032


>gi|294644142|ref|ZP_06721917.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|292640507|gb|EFF58750.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
          Length = 1063

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69
             I H+  +P+  I + LE+L E      +    +  I  +++     +  +       + 
Sbjct: 820  NISHEFRTPLTLIVSQLEMLMERNDIQPLVYGKLVGIHRNTLRMKRLITELLDFRKQEQG 879

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKILLNLFM 124
               +  S   +    D   +     A  K++   +  +           +  K++ NL  
Sbjct: 880  FEKFKYSKQDIYSFLDEIYLSFKEYARGKQIIFEYFNKDRSLDVWFDVVQLEKVIYNLLS 939

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181
             A    P GG V++SVQ+ +N  +  +   G         + F +    +         I
Sbjct: 940  NAFKYTPLGGTVSLSVQEYENSVMILISDTGIGIAEENLNKIFDRFYQVDSLDNQKGTGI 999

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +K ++     +         L 
Sbjct: 1000 GLALAKSIIEAHKGKIGARSREGKGTTFVVELP 1032


>gi|291515126|emb|CBK64336.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Alistipes shahii WAL
           8301]
          Length = 349

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 25/220 (11%)

Query: 21  RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            + H++ +PI  I   +  L     ++  I  + ++    S    I  +  +        
Sbjct: 123 NVAHELKTPIFNIQGYISTLLDGGLEDELINRKYLERAEKSIDRLINIVNDLDTISKLES 182

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------------WTGEKIDLSRERAKILL 120
           S++ L         +   IA    ++                      +       ++ +
Sbjct: 183 SMNKLNLERFDVVALAKEIAEQAEMEADRKEIRISVKGTDNLPSPFWVLADKHYIGQVFV 242

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           NL + +      GG+  I  +D  ++ +  ++ NG+     +    F +    +      
Sbjct: 243 NLIINSIRYGKEGGQTRIRFRDMLDKILIEVEDNGSGIAKEDLPRVFERFYRTDKGRSRE 302

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +   +  R+            S  L+K
Sbjct: 303 QGGTGLGLAIVKHIVEAHGERITVRSELGVGSTFSFTLKK 342


>gi|262382250|ref|ZP_06075387.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295128|gb|EEY83059.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 570

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 20/213 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           S I H++ +PI AI  SLELL++          E     +   S     I  + ++++  
Sbjct: 355 STISHELKTPISAIMMSLELLEDNRIGKLNTEQESLSKNIKENSDRLLEITGELLKMSQV 414

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124
            +G +     +    ++I+  I  +         +++V +  +   L  +  KI   +  
Sbjct: 415 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKITKLFVDSEKIAWVVTN 474

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179
               A       G++ I  +         +K  G     R+ E           + +   
Sbjct: 475 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 534

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +           +   +  E            
Sbjct: 535 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 567


>gi|256839283|ref|ZP_05544793.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256740202|gb|EEU53526.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 572

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 20/213 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           S I H++ +PI AI  SLELL++          E     +   S     I  + ++++  
Sbjct: 357 STISHELKTPISAIMMSLELLEDNRIGKLNTEQESLSKNIKENSDRLLEITGELLKMSQV 416

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124
            +G +     +    ++I+  I  +         +++V +  +   L  +  KI   +  
Sbjct: 417 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKITKLFVDSEKIAWVVTN 476

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179
               A       G++ I  +         +K  G     R+ E           + +   
Sbjct: 477 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 536

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +           +   +  E            
Sbjct: 537 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 569


>gi|241896076|ref|ZP_04783372.1| sensor histidine protein kinase [Weissella paramesenteroides ATCC
           33313]
 gi|241870676|gb|EER74427.1| sensor histidine protein kinase [Weissella paramesenteroides ATCC
           33313]
          Length = 458

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 75/230 (32%), Gaps = 19/230 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++   +   D+     +   H++ +P+ +I    E L     ++     + +++I+  + 
Sbjct: 227 DMTEVIQMKDMQTAFVANASHELRTPLTSISGFTETLLNGAQEDPTDRQQFLEIIQSETK 286

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKI 109
             +     +          ++L      E V + F A  +            V+ T    
Sbjct: 287 RLLDLTDDILTLAKVPERANTLQQFNMSEMVEKIFNAKAEIKDNLNLTLKNEVNDTLVVN 346

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
                  +IL NL   A     + G V +S   + NE +F++K  G      E    F +
Sbjct: 347 QNKSNFEQILTNLIGNAMKYNRQDGSVKVSAMVTANELVFAVKDTGLGIPSDEQNRIFER 406

Query: 167 IVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +     +I    +    V  L  + + ++           ++  L 
Sbjct: 407 FYRVDKSRTKSIPGTGLGLAIVNDLVEQAQGKIELTSQVGVGTTITVTLP 456


>gi|237714770|ref|ZP_04545251.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262406954|ref|ZP_06083503.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|229445095|gb|EEO50886.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262355657|gb|EEZ04748.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
          Length = 1342

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 67/213 (31%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69
             I H+  +P+  I + LE+L E      +    +  I  +++     +  +       + 
Sbjct: 829  NISHEFRTPLTLIVSQLEMLMERNDIQPLVYGKLVGIHRNTLRMKRLITELLDFRKQEQG 888

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKILLNLFM 124
               +  S   +    D   +     A  K++   +  +           +  K++ NL  
Sbjct: 889  FEKFKYSKQDIYSFLDEIYLSFKEYARGKQIIFEYFNKDRSLDVWFDVVQLEKVIYNLLS 948

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181
             A    P GG V++SVQ+ +N  +  +   G         + F +    +         I
Sbjct: 949  NAFKYTPLGGTVSLSVQEYENSVMILISDTGIGIAEENLNKIFDRFYQVDSLDNQKGTGI 1008

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +K ++     +         L 
Sbjct: 1009 GLALAKSIIEAHKGKIGARSREGKGTTFVVELP 1041


>gi|229090353|ref|ZP_04221596.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42]
 gi|228692936|gb|EEL46654.1| hypothetical protein bcere0021_11820 [Bacillus cereus Rock3-42]
          Length = 466

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLQKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    S+K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELSIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWKIESEKGNGTTVSIKLK 458


>gi|229154966|ref|ZP_04283080.1| hypothetical protein bcere0010_11600 [Bacillus cereus ATCC 4342]
 gi|228628524|gb|EEK85237.1| hypothetical protein bcere0010_11600 [Bacillus cereus ATCC 4342]
          Length = 466

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKICISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    ++K  G             +    +          
Sbjct: 364 NAIRYTNQNGAIMITLRQIDDYCELNIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458


>gi|150010494|ref|YP_001305237.1| two-component system sensor histidine kinase, FrrD [Parabacteroides
           distasonis ATCC 8503]
 gi|149938918|gb|ABR45615.1| two-component system sensor histidine kinase, FrrD [Parabacteroides
           distasonis ATCC 8503]
          Length = 572

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 65/213 (30%), Gaps = 20/213 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           S I H++ +PI AI  SLELL++          E     +   S     I  + ++++  
Sbjct: 357 STISHELKTPISAIMMSLELLEDNRIGKLNTEQESLSKNIKENSDRLLEITGELLKMSQV 416

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124
            +G +     +    ++I+  I  +         +++V +  +   L  +  KI   +  
Sbjct: 417 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKITKLFVDSEKIAWVVTN 476

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179
               A       G++ I  +         +K  G     R+ E           + +   
Sbjct: 477 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 536

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +           +   +  E            
Sbjct: 537 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 569


>gi|117620646|ref|YP_855451.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
 gi|117562053|gb|ABK39001.1| virulence sensor protein BvgS, putative [Aeromonas hydrophila subsp.
            hydrophila ATCC 7966]
          Length = 1425

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 24/236 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +   +   +M + +   + + H++ +PI  +H  LELL    + D+   L+R    S 
Sbjct: 814  LREARAYAEQAMQVRSRFLATMSHELRTPISGMHGMLELLQMSELNDDQRYLLRNVVTST 873

Query: 61   IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                  +        SV   +  G         + V        
Sbjct: 874  NNLLYLVNDVLDFSKIEAGQLQLHYQDCRLASVICDVIRGHATLAHGKGLKVTLEWAPEV 933

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +    +    ++L NL   A     RG        + +   I  +   G      +K 
Sbjct: 934  PDQARIDAVRVGQVLSNLLNNAVKFTERGEIRIQVSFEKERLAIA-VSDTGIGI-AEDKQ 991

Query: 165  TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++          +        +       LA +    L+ E    H   L+    
Sbjct: 992  DRLFTPFEQVESDITRRFGGTGLGLAICHQLAQKMGGTLVLESKPGHGTRLTFDFP 1047


>gi|110803031|ref|YP_699592.1| sensor protein yycg [Clostridium perfringens SM101]
 gi|110683532|gb|ABG86902.1| sensor histidine kinase [Clostridium perfringens SM101]
          Length = 473

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 71/223 (31%), Gaps = 17/223 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS---------A 60
              ++   L   I H++ +P+  I + LE +     E    +L+ +   +          
Sbjct: 248 EQENIRKRLTGDISHELKTPLTNIQSHLEAMIYGIWEPTEERLLSVKEEAERLSSLVSDM 307

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
               K+   +        ++  +          +A  K +++ +  + I+L  ++    +
Sbjct: 308 QKLNKYDESSIKLKKDNVNISDIICFVIFQFSNLAKSKNIKIEYEKKNINLYCDKDKITQ 367

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--V 172
            L+N+   A      G  + I  +   N+ I S++  G      +    F +    +   
Sbjct: 368 ALVNILSNAIRYSNEGSTIFIEEKLKDNKVIISIEDQGIGISEEDLKYVFERFYRADKSR 427

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   I    V  +   +   +  E         + +L K
Sbjct: 428 TRATGGTGIGLTIVKSIVSSHGGEVKLESKLGEGSKFTIILPK 470


>gi|148260877|ref|YP_001235004.1| integral membrane sensor signal transduction histidine kinase
           [Acidiphilium cryptum JF-5]
 gi|146402558|gb|ABQ31085.1| integral membrane sensor signal transduction histidine kinase
           [Acidiphilium cryptum JF-5]
          Length = 549

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 76/245 (31%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSM--DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A+ +  +  ++   + A+    + + H+I +P+ +I +++E +          +L  + 
Sbjct: 305 LARALEESAHALWARMDAIERFAADVAHEIKNPLSSIRSAVETVRRTDDPARAARLFDII 364

Query: 57  SMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           S       +              ++      VD    L  + ++ +     D  V V   
Sbjct: 365 SQDVRRLDRLISDISDSSRLDSEMSRTALEPVDLAPILAALAEIHQSTREDDAPVMVLDA 424

Query: 106 GEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +             ++L NL   A +  P+ GK+ +  + + +    +++  G      
Sbjct: 425 PKTGLVVRGAEGRLVQVLRNLIGNAISFSPQRGKIWLRGRVTGSIVELAVEDEGPGIPDA 484

Query: 162 EKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLS 210
           +    + D                 +       +   ++ R+  E   D           
Sbjct: 485 KL-DHVFDRFYSERPQGEGFGNHSGLGLSISRQIVEAHQGRITAENRRDPEGAVIGARFV 543

Query: 211 ALLEK 215
             L +
Sbjct: 544 IRLPR 548


>gi|302671731|ref|YP_003831691.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
 gi|302396204|gb|ADL35109.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
          Length = 268

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 66/244 (27%), Gaps = 29/244 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +     L+   I HD+ +P+ AI ++++ L++   +  +       +   
Sbjct: 24  LLEANARLQQAERERKLMLENISHDLRAPLTAIRSAIDYLNQKNTDCGLQSSGDEMTQML 83

Query: 61  IIRLKF-----------------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
            +                           ++L                          + 
Sbjct: 84  HLIDNRTRTLEVLISDLYYLTCIENGSDELKLQKVPLSQFLEEYFFAAQIDDKYSARNLI 143

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             +   +  E      + +++L NLF  A      G  + + V D    + F +K  G  
Sbjct: 144 CEIPDDYDAEVNVDVGKMSRVLDNLFTNARKYSENGADIVLGVLDEGQLSTFYVKDTGKG 203

Query: 158 ARF---PEKFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                    F +    +   T D      +    V  +  ++  R+  E           
Sbjct: 204 IPEEALDHIFERTYRVSGARTPDGESSSGLGLSIVKGIVTQHGGRIWCESKLGKGSCFYV 263

Query: 212 LLEK 215
            L K
Sbjct: 264 ELPK 267


>gi|299069582|emb|CBJ40854.1| sensory histidine kinase in two-component regulatory system
           [Ralstonia solanacearum CMR15]
          Length = 676

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 73/234 (31%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL     ++ + +    +   + 
Sbjct: 288 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 345

Query: 62  I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                     + ++   +G V   I       + +  +   + +A  K++ V        
Sbjct: 346 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQITVDTEYLPVP 405

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG V I+VQ   +  + +++  G        P  
Sbjct: 406 LLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLVATVRDTGIGIEPTFLPHV 465

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           F +    +           +       L   +  R+       D    ++  L 
Sbjct: 466 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGRITAASSGADLGTTMAVTLP 519


>gi|295694967|ref|YP_003588205.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
 gi|295410569|gb|ADG05061.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus tusciae DSM 2912]
          Length = 371

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           +A+ +     S      + + I H++ +P+  + + LE   +     ++  ++       
Sbjct: 130 LAEALARQEDSRK---TMTADIAHELRTPLATLKSHLEAFLDGVWEPDEARLRGCYEEIE 186

Query: 59  SAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGE 107
             I  ++ +                 V+    LG    +          D  ++ +    
Sbjct: 187 RLIRLVRDVEALAELEAPGFRLQPTRVNLCDVLGRAVALYRPSYFQKGVDLAMECAGPVW 246

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    +++ NL   A  + P+ GKVT+S + +    +  ++  G      E    F
Sbjct: 247 AEADPERLTQVVTNLLSNALKATPQEGKVTVSAETAGVWRVIRIQDTGRGIPPQELAKVF 306

Query: 165 TQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +               I    V  L   +  R+          ++   L 
Sbjct: 307 ERFYQVGQRRSRDGGAGIGLTIVKRLVEAHGGRVQIHSELGKGTMVRVDLP 357


>gi|225569041|ref|ZP_03778066.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM
           15053]
 gi|225161840|gb|EEG74459.1| hypothetical protein CLOHYLEM_05120 [Clostridium hylemonae DSM
           15053]
          Length = 475

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 62/232 (26%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            +     +    + + +   I HD  +P+  I     L+ +         +  +  ++  
Sbjct: 237 QERTKVEMEREHMKSSMLRSISHDFRTPLTGILGDCSLIIDSKEMGREEEKQLLKDIMEQ 296

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------E 107
           S     + +  + +    +G          I+ VI         +               
Sbjct: 297 SMWLMKMVVNILNMTKIESGQQFVEKSGEVIDDVINGAERHVIGLGQRDYHVVLPKQVIM 356

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +   ++L+N+   A      GGK+ ++    +     S++ +G       +    
Sbjct: 357 AQMDGKMIMQVLVNILDNAVKHTQEGGKIILTASFRRKRLYVSIEDDGPGIEEGMEEKIF 416

Query: 168 VD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +     G          +       +   +   +  E   +     +  L 
Sbjct: 417 DEFVSLSGESMDQKRGIGLGLAICRQVVSAHGGEIWAENRSEGGARFTFWLP 468


>gi|209525937|ref|ZP_03274471.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
 gi|209493614|gb|EDZ93935.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira maxima CS-328]
          Length = 368

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS 57
           N+   L +      L S   HD+ +P+ +I  S +LL       +   + +  Q I+ S 
Sbjct: 134 NLFQELEAEK--TRLLSIASHDLKNPLTSIQMSTDLLAKYDSKLDEQKKLKHFQRIQSSI 191

Query: 58  MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWT 105
            S                         V+ +  +  +   +   +    ++++       
Sbjct: 192 NSMNQLLEDVLTLSKSSSGKLTFAPKLVNVVKLIQLLIDQLMVQVNDQHKLELRTSGDLD 251

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
              +   +    IL NL   A    P GG +   V   +N+ IF +K  G         +
Sbjct: 252 DPIMLDDKLLGHILANLLSNAIKYSPDGGVINFDVIRQENQIIFRIKDAGIGLPPEYKQK 311

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F     G+    I    +    V      +   +  +         + +L 
Sbjct: 312 LFQAFERGSNVGNIKGTGLGLSIVKQAVDLHGGEITVDSELGQGTTFTVILP 363


>gi|167913353|ref|ZP_02500444.1| two-component system sensor protein [Burkholderia pseudomallei 112]
          Length = 927

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 543

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 544 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 664 TVTVALP 670


>gi|158319898|ref|YP_001512405.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
 gi|158140097|gb|ABW18409.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus oremlandii OhILAs]
          Length = 446

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 74/235 (31%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
            +NI   +    + + L   I HD+ +P+  I  +  ++ E         + +L+   + 
Sbjct: 208 RENIRIAMEREKMRSNLLRAISHDLKTPLTGIVGASGVILENLTKLDNCNIKKLVCDINE 267

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---- 114
            A      +      T   +  + +    +V++D +    R   +++  K          
Sbjct: 268 EATWLSNLVENILNMTRISEGKLMIEKNYEVVDDIVYEAIRHVKNFSNTKNISVSMPEEV 327

Query: 115 ---------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L+NL   A        K+ I+V    +  +F +  NG+         
Sbjct: 328 VMVFIDGKLMVQVLINLLDNAMKHTGDDCKIQITVYVHNDSAVFEVSDNGSGIDNN-IED 386

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  V S++          +       +   ++  +      +   +    L 
Sbjct: 387 SLFDSFVTSSVKTIDGKRGMGLGLSICKSIIEAHQGTITAGRSKEGGALFRFTLP 441


>gi|119383347|ref|YP_914403.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans
           PD1222]
 gi|119373114|gb|ABL68707.1| multi-sensor hybrid histidine kinase [Paracoccus denitrificans
           PD1222]
          Length = 680

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 68/236 (28%), Gaps = 31/236 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62
           + S  + A+  L   I HD  + + AI    +LL    D+   +   +  I  ++  A  
Sbjct: 298 VQSQKMQAIGQLAGGIAHDFNNLLTAITGHCDLLMLRHDKADPDYADLDQISQNANRAAA 357

Query: 63  RLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            ++ +             +D    L ++  ++   +     +          +  +R ++
Sbjct: 358 LVRQLLAFSRKQTLKLQIMDLRDTLSELTHLLNRLVGERIVLTFDHDPALRMVHADRRQL 417

Query: 119 LLNLFM---VAHASLPRGGKVTISVQDS---------------KNENIFSLKINGNLARF 160
              +      A  ++P GG +TI   +                 +     ++  G     
Sbjct: 418 EQVIMNLVVNARDAMPEGGDITICTDNVRLETRAELGRAVLPAGDYVRVQVRDQGCGIAP 477

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I +    +    +   +       +  +    +  +         S    
Sbjct: 478 DDL-AKIFEPFFTTKRTGEGTGLGLSTAYGIVKQTGGYIFCDSTPGEGSCFSLFFP 532


>gi|325104528|ref|YP_004274182.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324973376|gb|ADY52360.1| multi-sensor signal transduction histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 675

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 80/227 (35%), Gaps = 21/227 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
              NL   + +A L S   H++ +P+ +I   L++L     + E+  L    ++  + +L
Sbjct: 446 KSLNLKKDEFIA-LAS---HELKTPLTSIKGYLQILSRSTHDKEMSDLFVNKALIQVGKL 501

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQV-----------IEDFIAVDKRVQVSWTGEKIDLSR 113
           + +         +++     +IE +              + +   ++ +      + +  
Sbjct: 502 ESLVSDLLNVSKIEAGKLQFNIEILDLRQLVLESIENFSYTSRSHKINLDDIKSPVIIEG 561

Query: 114 ERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQI 167
           ++    ++++NL   A    P+  KV + +   +N  I S+K  G           FT+ 
Sbjct: 562 DKQRLEQVIINLLSNAVKYSPKSDKVDVFLSSDENNAIVSIKDTGLGLSNESQKNIFTRF 621

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 S I    +  Y    +   +  ++  E         +  L 
Sbjct: 622 YRAEGVSNISGLGLGLYLTKEIVERHHGKIEVESELGQGAEFTFTLP 668


>gi|307325426|ref|ZP_07604628.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           violaceusniger Tu 4113]
 gi|306888895|gb|EFN19879.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           violaceusniger Tu 4113]
          Length = 398

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 54/225 (24%), Gaps = 26/225 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 166 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 225

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                          VD    +    Q +       +R  +   G    L  +     ++
Sbjct: 226 ISRIDSGRLEVRRQPVDLAAAVRRHVQALTAAGHTAERFLIRARGPLPRLWADPDKIDQV 285

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI---------FSLKINGNLARFPEKFTQIVD 169
           L NL   A         + I+        +          ++   G              
Sbjct: 286 LGNLLENAVRHGEGTVTIDIAPATPAKPVVEGPPVERTAVTVSDEGPGIPEESMSRVFTR 345

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               S      +  Y V  +   +   +  E           +L 
Sbjct: 346 FWRGSKRGGTGLGLYIVKGIVEAHGGTITVERARGGGAEFRFILP 390


>gi|298479786|ref|ZP_06997986.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298274176|gb|EFI15737.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
          Length = 1342

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------RL 69
             I H+  +P+  I + LE+L E      +    +  I  +++     +  +       + 
Sbjct: 829  NISHEFRTPLTLIVSQLEMLMERNDIQPLVYGKLVGIHRNTLRMKRLITELLDFRKQEQG 888

Query: 70   AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKILLNLFM 124
               +  S   +    +   +     A  K++   +  +           +  K++ NL  
Sbjct: 889  FEKFKYSKQDIYSFLEEIYLSFKEYARGKQIIFEYFNKDRSLDVWFDVVQLEKVIYNLLS 948

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDI 181
             A    P GG V++SVQ+ +N  +  +   G         + F +    +         I
Sbjct: 949  NAFKYTPLGGTVSLSVQEYENSVMILISDTGIGIAEENLNKIFDRFYQVDSLDNQKGTGI 1008

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   +K ++     +         L 
Sbjct: 1009 GLALAKSIIEAHKGKIGARSREGKGTTFVVELP 1041


>gi|260223179|emb|CBA33482.1| hypothetical protein Csp_B19280 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 450

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIR 54
            + +   +   DL +   +   H+  +P+  IH S++LL        V       +++  
Sbjct: 205 KRALQQQIELNDLKSRFITMASHEFRTPLATIHGSVDLLMHYDDRMPVDKKRLTLLKIDD 264

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----------EDFIAVDKRVQVSW 104
                  +    + +     G +        +                      ++ +  
Sbjct: 265 AVERMTHMLENVLVIGRSDAGRLQFKPQPSQVAVFCKSLVDELRSAMAEPFRRIQMAMDL 324

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-- 159
             +      +   I   +      A    P GG+VT+ V+    E + ++   G      
Sbjct: 325 PRDTDAYLVDEVLIRNIVGNLLSNAIKYSPHGGQVTLRVRPRPGELVITVSDQGIGIPLA 384

Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             P+ F      +    I    +    V      +   +  +         + +L
Sbjct: 385 DQPQLFESFHRASNVGNISGTGLGLAIVRDAVQCHGGSISLQSTPGEGSTFTVVL 439


>gi|255690627|ref|ZP_05414302.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
 gi|260623650|gb|EEX46521.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides finegoldii DSM 17565]
          Length = 1353

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 66/229 (28%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 817  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +       ++ + + +                  ++ +   E    
Sbjct: 875  ITELLDFRKQEQGHMKIKTSKHNLVEFLYENYLLFLEYASSKQINFNFIKQTDDIEVWYD 934

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         +TI V   ++  I  +K  G+     E         
Sbjct: 935  QKQMQKVINNLLSNALKHTKAEDTITIKVSQEQDHAIIEIKDTGSGIAAAEIDKIFDRFY 994

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +D         I       +   +   +  E            L+
Sbjct: 995  QTEHLDSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043


>gi|225027391|ref|ZP_03716583.1| hypothetical protein EUBHAL_01647 [Eubacterium hallii DSM 3353]
 gi|224955288|gb|EEG36497.1| hypothetical protein EUBHAL_01647 [Eubacterium hallii DSM 3353]
          Length = 347

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +       +  E  +         L K
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341


>gi|172037421|ref|YP_001803922.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171698875|gb|ACB51856.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 418

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 66/236 (27%), Gaps = 24/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           KN+     +    +   + I H++ +P+ AI    +LL     +    Q I +       
Sbjct: 178 KNLQLQ-EASRRQSQFLATISHELRTPMNAIMGFSQLLLRQYPDPLTDQQIDIIQRIFNN 236

Query: 63  -------RLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    + +  +    G +D  I            +E++    +  +  + V     
Sbjct: 237 SQNLLTLINEVLDFSKLEIGQMDLNIGKFDLDILVRFTVEELSSLTLNKNLSLNVDIHLA 296

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  ++    +IL+NL   A    P G       + +      +++  G         
Sbjct: 297 NNQVINDKNFLKRILINLLSNAIKFTPAGEIWVKVWEMNPERIAITIEDTGVGIAPEHLK 356

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           T     +              +    V  L    +  +      +   V    + +
Sbjct: 357 TIFTPFHQVDQTLTRQHLGTGLGLAIVYSLVKMMQGEIHVTSQLEQGSVFRVEIPR 412


>gi|153813052|ref|ZP_01965720.1| hypothetical protein RUMOBE_03460 [Ruminococcus obeum ATCC 29174]
 gi|160894162|ref|ZP_02074940.1| hypothetical protein CLOL250_01716 [Clostridium sp. L2-50]
 gi|149830854|gb|EDM85944.1| hypothetical protein RUMOBE_03460 [Ruminococcus obeum ATCC 29174]
 gi|156864195|gb|EDO57626.1| hypothetical protein CLOL250_01716 [Clostridium sp. L2-50]
          Length = 347

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +       +  E  +         L K
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341


>gi|153854282|ref|ZP_01995581.1| hypothetical protein DORLON_01576 [Dorea longicatena DSM 13814]
 gi|149753057|gb|EDM62988.1| hypothetical protein DORLON_01576 [Dorea longicatena DSM 13814]
          Length = 347

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +       +  E  +         L K
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341


>gi|83644997|ref|YP_433432.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83633040|gb|ABC29007.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 905

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 62/237 (26%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
           +++     +  +     S I H++ +P+ AI+ SL LLD          + +++ + R +
Sbjct: 667 RDVTERAEAERIKDEFISTISHELRTPLTAINGSLALLDAKVAMAAPDKQAQMIGIARRN 726

Query: 57  SMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVS 103
           +   +                        +    + D+  + +            ++   
Sbjct: 727 TDRLLNLVNAILDLKKMASGEMTLQLSHFNLAQLVSDVLALNQGLAHNADVSFSLQIPSD 786

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L NL   A    P   ++ +SV    +    S+   G        
Sbjct: 787 CVIVVEADEERLTQVLTNLISNAAKFSPPHTEIVVSVTLEDSIARVSVTDKGPGVPPEFL 846

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I                   +       +   +  ++               L 
Sbjct: 847 N-RIFGRFAQADSSNTRNKSGTGLGLNISKAIIERHGGKIGFHNNPGGGCTFYFELP 902


>gi|120556580|ref|YP_960931.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120326429|gb|ABM20744.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 966

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 56/214 (26%), Gaps = 21/214 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK--------------F 66
            + H+I +P+ AI    +L+ +  +++   + + +   SA   L                
Sbjct: 413 NMSHEIRTPMNAIIGFTDLVLDTPLDETQARHLGVVKTSARSLLNLLNDILDTAKLDGGH 472

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
             L             +   + +      +   +                +++LNL   A
Sbjct: 473 TELELHDFNLRRLCDQVIATQSLNAARKGLYLTLDYQAGEYYQGDPLRIQQVVLNLLSNA 532

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHD 180
                 GG      + S ++ +  ++  G      ++  +I +        +        
Sbjct: 533 VKFTQTGGVTLKVQEPSVHKVVIRVEDTGIGI-SADRIDRIFEPFTQADSSMTRRFGGTG 591

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L       +          V    L 
Sbjct: 592 LGTTIARQLVELMGGTISVTSSPGEGSVFQVELP 625


>gi|298506844|gb|ADI85567.1| sensor histidine kinase response regulator, PAS and PAC
           domain-containing, putative heme-binding site [Geobacter
           sulfurreducens KN400]
          Length = 882

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 64/242 (26%), Gaps = 33/242 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L +  L +L  L   I HD  + + AI  + +L    L+      + +  I  ++ 
Sbjct: 500 EKQLLHAQKLESLGVLAGGIAHDFNNILTAIVGNTDLALMRLNPESPVRDNLARIERAAN 559

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    K M             +D    + ++  +++  I+    ++ ++      +  +
Sbjct: 560 RASDLAKQMLAYSGKGKFVIEPIDLNRLVEEMTHMLQVSISKKAVLRFNFADSLPTVDAD 619

Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152
             ++   +  +   +                                           + 
Sbjct: 620 ATQLRQIIMNLVINASEAIADKSGVIAISTGCMQCDRKYLSNAWLNESIPEGLYVWLEVA 679

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G      E  ++I D    +      +    V+ +   +K  +              L
Sbjct: 680 DTGCGM-DRETVSKIFDPFFTTKFTGRGLGMAAVLGIVRGHKGAIRVYSEPGRGTTFKVL 738

Query: 213 LE 214
           L 
Sbjct: 739 LP 740


>gi|295095446|emb|CBK84536.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain./HAMP domain [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 765

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   M  V  L   + HD  + +  I  SLEL D    +   +     ++     
Sbjct: 390 EEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTDSASPDAPRITRALKAAERGAM 449

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R       +V+    L ++ +++   +     + +           + +++
Sbjct: 450 LTQRLLAFSRKQSLQPHAVEMKPLLENLSELMRHSLPATLTLDIEAQTPAWPAWIDVSQL 509

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G      E  +
Sbjct: 510 ENAIINLVMNARDAMEGQNGVIKIRTWNQRVTRSDGRRQDMVALEVIDHGCGM-SQEVKS 568

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 569 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 620


>gi|226304477|ref|YP_002764435.1| two-component histidine kinase PhoR [Rhodococcus erythropolis PR4]
 gi|226183592|dbj|BAH31696.1| two-component histidine kinase PhoR [Rhodococcus erythropolis PR4]
          Length = 483

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 62/232 (26%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMS 59
           A       S   +         H++ +P+  I    EL  +  + D    M  I   +  
Sbjct: 248 ASEESARRSEEKMR-RFVGDASHELRTPLTTIRGFAELYRQGAMTDTETLMNRIEGEASR 306

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110
             + ++ + +               D+  V  D +   + +    T E            
Sbjct: 307 MGLLVEDLLMLARLDEQRPLENKPVDLLAVAADSVQAARAIAPDRTVELQMTGGPGLPEV 366

Query: 111 --LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   +++ NL   A    P   +VT+ V  ++N  +  +   G      +    F 
Sbjct: 367 QGDEARLRQVVANLVGNAIKHTPPDAQVTVRVGTTENSAVVEVSDTGQGLSDEDAARIFE 426

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +           +    V  L   +   +  E            L +
Sbjct: 427 RFYRADTSRTRETGGAGLGLSIVSALVAAHDGTVSVETSLGQGTTFRVELPR 478


>gi|218671082|ref|ZP_03520753.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli GR56]
          Length = 330

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 72/246 (29%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  + A+  L   I HD  + + AI  S +  LL     +     L+ + 
Sbjct: 83  QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDASFADLMEIK 142

Query: 57  SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106
                        L F R        ++    +GD+  +++                   
Sbjct: 143 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 202

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P GG                   S   +++  +  +
Sbjct: 203 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLVEV 262

Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +I +    +        +    V  +  ++   + PE         
Sbjct: 263 TDTGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 321

Query: 210 SALLEK 215
              L +
Sbjct: 322 RVFLPR 327


>gi|94267839|ref|ZP_01291005.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451836|gb|EAT02580.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 262

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDL----VAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            KN      S +L      L      + HD+  P+  ++  ++LL+    +    +   +
Sbjct: 13  RKNRQLEEKSAELTRSNAELEQFAYVVSHDLRQPLRMVNGYMQLLERALDDKLDDETREM 72

Query: 56  SS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                         L  +          + +  L   E V E    ++  +  +    K 
Sbjct: 73  MGFAVGGAQRMDHMLVSLLDYSRVGRRGEPMAPLASREAVAEALHFLEPEINQTGATVKR 132

Query: 110 DLSR--------ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLAR 159
                       E  ++  NL   A        K  I   V    N   F++  NG    
Sbjct: 133 SGDWPEIVASRDEFTRLWQNLIGNALKYRDPQRKPEIELSVSPEANGWRFTVADNGIGID 192

Query: 160 FPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             + F ++             D   I       +   +  R+  E             L 
Sbjct: 193 PGQ-FDRLFKVFQRLHPKDQYDGTGIGLAVCRKIVERHGGRIWVESEGAGQGSRFIFTLP 251

Query: 215 K 215
           +
Sbjct: 252 R 252


>gi|42780488|ref|NP_977735.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
 gi|42736407|gb|AAS40343.1| sensor histidine kinase [Bacillus cereus ATCC 10987]
          Length = 466

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + ++++   +    ++K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIIVTLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458


>gi|225175360|ref|ZP_03729355.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169112|gb|EEG77911.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Dethiobacter alkaliphilus AHT 1]
          Length = 862

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           +      + ++ V+ L   I HD  + +  I  +L L      E+  +            
Sbjct: 485 QEEMLRSNKLESVSTLAGGIAHDFNNLLTVILGNLSLAKLYADENNKVMAKICEIEKAAK 544

Query: 59  ----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSR 113
                    L   +         +    + +  + +     V     +            
Sbjct: 545 NAQGLTKRLLTISKGGAPIKKVTNLGPLIREWAEFVLSGSNVACDYDLPHDLHPVEIDQG 604

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGNLAR 159
           +  + + NL + A  ++P GG +++   +                     S +  G    
Sbjct: 605 QLNQAINNLLLNAKEAMPNGGSISVKACNVTFSGEGIHSKKLAEGKYLRISFQDQGKGIP 664

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 ++ D    +  +   +  +    +   +   +      D   V +  L 
Sbjct: 665 PT-IIDRVFDPFFTTKPEGSGLGLFTAYSIIKHHNGTIEVTSEIDAGTVFTIHLP 718


>gi|225571267|ref|ZP_03780263.1| hypothetical protein CLOHYLEM_07364 [Clostridium hylemonae DSM
           15053]
 gi|225159743|gb|EEG72362.1| hypothetical protein CLOHYLEM_07364 [Clostridium hylemonae DSM
           15053]
          Length = 397

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIR 54
           + +     L  ++   L+     +   H++ +P+  I +SL++L+      + +  + + 
Sbjct: 158 LNEAFNDMLERLEDAFLIQKSFAANAAHELKTPLAVIKSSLQVLEMTPNPEQKDYEEFME 217

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------VQVS 103
            +  S    +K +          +  +        +      +             +   
Sbjct: 218 NTGKSLDRIIKTVDGLLSLANLTEVPVDQDIELSSLLRQAVQEMSGSAEKTDVEIVLTCE 277

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        + + NL   A      GGKV I++   +      +  +G        
Sbjct: 278 NDISVHGNPDLLYRAVFNLIENAVKYNIPGGKVLITLTADEQSASIRVSDSGIGIPTEAL 337

Query: 164 FTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                       +    I  + +    V ++A  +  ++  E  +      + LL
Sbjct: 338 GHIFEPFYRADPSRSQKIPGYGLGLATVKMIADRHGGQISVESTEGSGTAFTLLL 392


>gi|254410345|ref|ZP_05024124.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196182551|gb|EDX77536.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 526

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            K +       +L + + + I H+  +P+  I  S ELL           +   +  I++
Sbjct: 282 RKALTTEQELSELKSRVVAMISHEYRTPLAVILTSTELLKRYSTQLSQEKQQTYLDRIQM 341

Query: 56  SSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                   ++ +                   +    ++ V E  + V  R  +++  +  
Sbjct: 342 GVKQMAQLVEEVLTFNKAQAGELQFNPEPLNMEDFCLQLVDEQRLMVGDRYTLTYNPQLS 401

Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   +    I+ NL   A     +G  V++S++   +  I  ++  G      E+ 
Sbjct: 402 SGEAELDKQMLRHIVTNLLSNAIKYSAKGTTVSLSLRREDDTLIIQVQDQGIGIPESEQP 461

Query: 165 TQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    S +       +    V      ++ ++           ++  L 
Sbjct: 462 RLFSPFFRASNVSTIAGTGMGLSIVKNCVDLHQGQIAIASEVGKGTTVTVTLP 514


>gi|254412795|ref|ZP_05026568.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196180530|gb|EDX75521.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 797

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 53/222 (23%), Gaps = 20/222 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR 63
             ++  A + S   HD+  P+  I +  +LL            D+ +  I  S +     
Sbjct: 577 QELEQFAYVAS---HDLREPLRKIRSYSDLLVKRYQGQLDERADKYIGYITDSVIRMQAL 633

Query: 64  LKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +  +      + +           I    +  +          +  +        S +  
Sbjct: 634 ITDLLTYSRVSRNELVLEPTDLGEILQQTLTDLSPAIEENQAIINTTHLPIVQANSLQIG 693

Query: 117 KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA---RFPEKFTQIVDGNV 172
           ++L NL   A                   +    S++ NG           F      + 
Sbjct: 694 QVLQNLIANAIKFRREQPPQIDIKADCQDDFWQISIQDNGIGIDPSYSDRIFAIFQRLHY 753

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   I       +   +  ++  E            L 
Sbjct: 754 REEYPGTGIGLAICQKIVERHGGKIWVESELGQGSTFYFTLP 795


>gi|325972395|ref|YP_004248586.1| multi-sensor signal transduction histidine kinase [Spirochaeta sp.
           Buddy]
 gi|324027633|gb|ADY14392.1| multi-sensor signal transduction histidine kinase [Spirochaeta sp.
           Buddy]
          Length = 1041

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 68/222 (30%), Gaps = 17/222 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAI 61
               + +  +  +  L + I H++ +P+  I  + E +L E+  ++   + ++     + 
Sbjct: 591 QEELVRTEKMAGIGTLAAGIAHELNNPLAGIVGTAEIMLSELEEKNPHFEYVQDILTYSK 650

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------ 115
                ++    Y+   +           + +F        +      ++ +         
Sbjct: 651 TASDVIKELSIYSRKEEVKQTQQVELVRVLEFSLRLALRGIDSLNIHVERNYHALPSIEA 710

Query: 116 -----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++ LNL + A  S+   GK+T+S  +        +   G         +QI   
Sbjct: 711 NEGELQQLFLNLIVNAIQSMDGNGKLTLSCIEKDGFVQVKVGDTGCGIPEKH-MSQIFTP 769

Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +        +       +  +   R+  +  +      +
Sbjct: 770 FFTTKAPGSGTGLGLSNCYNIVEKMGGRIRVKSEEQVGSEFT 811


>gi|308172234|ref|YP_003918939.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307605098|emb|CBI41469.1| two-component sensor histidine kinase [YclJ] [Bacillus
           amyloliquefaciens DSM 7]
 gi|328552044|gb|AEB22536.1| two-component sensor histidine kinase (YclJ) [Bacillus
           amyloliquefaciens TA208]
 gi|328910308|gb|AEB61904.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 474

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           MA N+  +               + + H++ +P+  I+  +E L+        +++   L
Sbjct: 231 MAHNLKQSREQIDRLEKRRRQFIADVSHELRTPLTTINGLVEGLNSNTIPEKDKEKCFSL 290

Query: 53  IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   +   +  +K                      ++    + +      +      R+Q
Sbjct: 291 ISEETKRMLRLVKENLDYEKIRSQQIKLDKLSLPLIEVFEIIKEHLNQQAEEKQNRLRIQ 350

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           V    +         +IL+N+   +      G       +  K      ++  G      
Sbjct: 351 VEAGVKVFADYDRLIQILVNITKNSIQFTQNGDITLRGYEGYKETI-IEIEDTGIGISKE 409

Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    + +    +V         + +    V  L   +K  +            +  L 
Sbjct: 410 EIEHIWERFYKADVSRTNTAYGEYGLGLSIVKQLVELHKGTIDINSEKGQGTTFTIRLP 468


>gi|302344236|ref|YP_003808765.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301640849|gb|ADK86171.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 975

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 31/238 (13%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDE-------VGIEDEVMQLIRLS 56
             + +  + A+  +   + HD  + +GAI    E+ L +           +++++     
Sbjct: 590 QLMQARKMEAIGVMAGGVAHDFNNILGAILGYAEMALQDAKTKRANPADLEQIVKAGERG 649

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  L F R        +D    +    Q++E  I     +++        ++ +  
Sbjct: 650 KQLVRQILTFSRKVEVDLRPLDLNQAVSQAAQLLEKTIPRMIGLELELIRRLRPINADAN 709

Query: 117 KILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLA 158
           ++   L      A  ++P                   +      S      S+   G   
Sbjct: 710 QLEQILLNLGVNAADAMPDGGLLRIRTENVVVENRSCLACGRTFSGQYVSLSVSDTGQGM 769

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I +    +        +    V  +   +   +            +    
Sbjct: 770 DRQTI-ERIFEPFFTTKPKGKGTGLGLATVYGIVLGHGGHIDCHSELGQGTTFTVFFP 826


>gi|229107946|ref|ZP_04237574.1| hypothetical protein bcere0018_2400 [Bacillus cereus Rock1-15]
 gi|228675508|gb|EEL30724.1| hypothetical protein bcere0018_2400 [Bacillus cereus Rock1-15]
          Length = 314

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 65/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 72  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    +       +     
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELNFSEVTREVLIEFLPELSKHNIELQIRIPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++  E    +   G      + 
Sbjct: 192 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E            + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 308


>gi|298528280|ref|ZP_07015684.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511932|gb|EFI35834.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 940

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 54/240 (22%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
                    D+     +   + + H+I +PI  I   L+LL    +  E  +   +  +S
Sbjct: 470 EQKVATQQADVANKAKSEFLANMSHEIRTPINGIMGILQLLQSTELSPEQQEYTNMGIVS 529

Query: 60  AIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           A    + +                      L  L D    +    + +K + + +T +  
Sbjct: 530 ASRLTRLLSDILDLSRIEAGQMEIRKEQVDLKKLCDSVDELFMVTSREKDISLEFTQDPC 589

Query: 110 DLSR------ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLAR 159
                        +I+ NL   A      G                  + ++   G    
Sbjct: 590 LPQVLLGDEARLQQIVFNLVGNALKFTQEGRISVNWHLQQRRGRDARVLLTVSDTGIGMT 649

Query: 160 FPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                     +    V  L       L  +            L 
Sbjct: 650 DDTLDELFKPFAQAENAFTRRYQGAGLGLSIVKRLVELMHGTLAVDSTPGQGSTFFVSLP 709


>gi|218780773|ref|YP_002432091.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218762157|gb|ACL04623.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 571

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 61/223 (27%), Gaps = 21/223 (9%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDE--------------VGIEDEVMQLIRLS 56
            L +L  L + + H+I +P+  I+    LL++                I   ++  +   
Sbjct: 344 KLASLGRLAAGVAHEINNPLAIINEKAGLLEDLIHLTPDFPQKEKAHEIVQSILGSVDRC 403

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           S      L F R       ++     + ++   + ++    +  V++        +  +R
Sbjct: 404 STITHRLLGFARHIDVNFETIYLDNLVKNVLGFLEKESHYREIEVKLEVEENLPAIESDR 463

Query: 116 AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            ++      + + +       G           ++    ++ NG                
Sbjct: 464 GQLQQVFLNILNNAFAAVEDGGKIEIHINSVGDDQVAVRIEDNGCGMPPEHMKLIFEPFF 523

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +  + K  +  +  +         L 
Sbjct: 524 STKGRKGTGLGLSITYGIIKKLKGSIEVDSQEGIGTTFVVTLP 566


>gi|160886358|ref|ZP_02067361.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|260173508|ref|ZP_05759920.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921779|ref|ZP_07918019.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156108243|gb|EDO09988.1| hypothetical protein BACOVA_04368 [Bacteroides ovatus ATCC 8483]
 gi|313695654|gb|EFS32489.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 660

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + K       S  L +   + + H+I +P+ AI    +LL   ++   ++E +Q+I  ++
Sbjct: 280 LEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 339

Query: 58  MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +  +  +                 +  +V        + + + +       V    T
Sbjct: 340 ELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYET 399

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL N    A     +G    +  +         ++  G      +K  
Sbjct: 400 CTVRLDKNRLAQILTNFVTNAIKYTSKGTIE-MGYEKIDENIRLYVRDTGIGI-PEDKKD 457

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++       +       +       +    +  +  E   D   +  A+L 
Sbjct: 458 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508


>gi|149182950|ref|ZP_01861407.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148849342|gb|EDL63535.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 466

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 16/213 (7%), Positives = 63/213 (29%), Gaps = 21/213 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMR------- 68
            + H++ +P+  +    E + E         ++ +++I   +      +  +        
Sbjct: 245 NVSHELRTPLSYMRGYTEAMLEGMTTSGEEREKYLRIIHNETARLTRLVNDLLDLAQLEG 304

Query: 69  ----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
               +          ++ + +  +   +   +   +Q+         +    +++ NL  
Sbjct: 305 ESYPMRKEPIPFAQLVMDVTERFKFHAEQKHIHLGLQLDEEVIIEGDADRLEQVISNLLD 364

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV--DGNVESTIDSH 179
            A    P  G+V + ++ + +  + ++K  G      +      +               
Sbjct: 365 NAIRYTPEAGEVMMELKQNDHLAVLTVKDTGCGIPEEDLENIMDRFYRVHKPRTRNEGGF 424

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +    V  +  ++   +  +        +S  
Sbjct: 425 GLGLAIVKQIVWKHGGTIDVQSQPGKGTSISLT 457


>gi|172062325|ref|YP_001809976.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171994842|gb|ACB65760.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 1032

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 54/227 (23%), Gaps = 25/227 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------- 63
              +   + + H+I +P+ AI  +LEL++   +   + + +     S+            
Sbjct: 520 KAKSTFLATMSHEIRTPLNAIIGNLELMERAQMAVPLRRRLGTIMSSSDALLRVINDVLD 579

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERA 116
                       +   D    + D+  +              R+        +  S    
Sbjct: 580 LSKAESNQMVLESIPFDLRRVVNDVAAIFRPLADAKNLALTCRIAPDLANGYVGDSTRLR 639

Query: 117 KILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +++ NL   A     RGG            +      ++   G         T       
Sbjct: 640 QLVSNLVSNAIKFTKRGGVTIDVRLAKAGPAGRGVEIAVSDTGIGIPEDSLPTLFDVYVQ 699

Query: 173 E-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       +       L  +       +  A L 
Sbjct: 700 TDASIYRRFGGTGLGLPLCRRIVTLMGGALNVDSRLGEGTIFVAALP 746


>gi|116626893|ref|YP_829049.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230055|gb|ABJ88764.1| integral membrane sensor hybrid histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 551

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 62/240 (25%), Gaps = 31/240 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS---M 58
               + S  + A+  L   + HD  + +  I    E+L E    +   ++          
Sbjct: 170 EAQLIQSQKMEAIGRLAGGVAHDFNNLLTVILGYTEMLREHLEEDAVALEFGDEIHLAAH 229

Query: 59  SAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            A      +                 D +  +  + + I       + +           
Sbjct: 230 RASDLTNQLLAFSRRQMSIPRVVSLNDVVNQIEKMLRRIIGEDIRLETLLTDSIQPVKVD 289

Query: 112 SRERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
                ++++NL + A  ++P GG +                    ++    + ++   G 
Sbjct: 290 PTHIQQVIMNLAVNARDAMPTGGTLIIETANVELSAEYAGRHIGVEAGPYTLLAVSDTGT 349

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    ++ +    +        +    V  +  ++   +L      H       L 
Sbjct: 350 GM-DDATKARLFEPFFTTKEQGKGTGLGLSIVYGIIKQSGGEILVYSEPGHGTAFKIYLP 408


>gi|94264437|ref|ZP_01288226.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455127|gb|EAT05349.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 57/250 (22%), Gaps = 37/250 (14%)

Query: 2   AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
            +     + + +L           +   + + H+I +P+  +     LL    +  E + 
Sbjct: 143 RRLEEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTAEQLS 202

Query: 52  LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
            +++   S                       +         +   + L    Q     +A
Sbjct: 203 YVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLA 262

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIF 149
           +   +  S             ++LLNL   A      G                     F
Sbjct: 263 LTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDFSCHF 322

Query: 150 SLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++K +G      +    F +    +           +       L       +  E    
Sbjct: 323 AVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVG 382

Query: 205 HNVVLSALLE 214
                   + 
Sbjct: 383 KGSTFWFTVP 392


>gi|94267582|ref|ZP_01290931.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93451940|gb|EAT02659.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 57/250 (22%), Gaps = 37/250 (14%)

Query: 2   AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
            +     + + +L           +   + + H+I +P+  +     LL    +  E + 
Sbjct: 143 RRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTAEQLS 202

Query: 52  LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
            +++   S                       +         +   + L    Q     +A
Sbjct: 203 YVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLA 262

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIF 149
           +   +  S             ++LLNL   A      G                     F
Sbjct: 263 LTCEISPSLPAIVEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPDFSCHF 322

Query: 150 SLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++K +G      +    F +    +           +       L       +  E    
Sbjct: 323 AVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVG 382

Query: 205 HNVVLSALLE 214
                   + 
Sbjct: 383 KGSTFWFTVP 392


>gi|90420924|ref|ZP_01228829.1| histidine kinase/response regulator [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90334899|gb|EAS48671.1| histidine kinase/response regulator [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 845

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 66/236 (27%), Gaps = 31/236 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   I HD  + +  I  S++ L           + + LI+ S+  A   
Sbjct: 464 KSQKMQAIGNLAGGIAHDFNNVLTIITASVDFLLLNHRTGDPSFQDLLLIKQSANRAASL 523

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           ++ +        +        D +  +  + + +    A  +R         +    +  
Sbjct: 524 VRQLLAYSRRQTMRPKMLNLTDVVADMHLLLKRVSGDHAKLERHHARDLWPVMADIGQFE 583

Query: 117 KILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161
           +++ NL   A  ++P                      +     +  +  +   G      
Sbjct: 584 QVITNLVQNARDAMPDGGTITISTRNVEAAEAAAFGYAEMTEGDYVLAEISDTGTGMPV- 642

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   +I +    +        +    V  +  ++   +  +            L +
Sbjct: 643 EVAERIFEPFFTTKDIGKGTGLGLSMVYGIVKQSGGFIFVDTKPGEGTTFRIFLPR 698


>gi|114320953|ref|YP_742636.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227347|gb|ABI57146.1| GAF sensor signal transduction histidine kinase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 456

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 25/235 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLI 53
                L+ +    L  +   HD+ +P+G ++  ++LL +  +             +  + 
Sbjct: 212 ERLMELNDLKNRFLGVA--AHDLRNPLGVLNGYIDLLRQEALGPLNEAQQEVMGVMADVA 269

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEK 108
              S      L    +  G        + L    Q               R+ +      
Sbjct: 270 ERMSALVEDLLDVSAIESGQLELEREPLDLNRFLQGQAHAQGLIAQGKSIRIVLDIPEPL 329

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             ++ +     ++L NL   A    PR   +T+  +        S+   G      E+  
Sbjct: 330 PTVAVDSRRLGQVLDNLIANAVKFSPRDSTITLGGRADDQSVRISVSDQGPGIPAEERAQ 389

Query: 166 -----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +       +   S  +    V  L   +  ++  +         +  L +
Sbjct: 390 LFQPFRRGSNAPTADEKSTGLGLSIVQKLVQAHGGQVAVDAAPGGGARFTVTLPR 444


>gi|293603774|ref|ZP_06686191.1| sensor histidine kinase KdpD [Achromobacter piechaudii ATCC 43553]
 gi|292817843|gb|EFF76907.1| sensor histidine kinase KdpD [Achromobacter piechaudii ATCC 43553]
          Length = 928

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56
           A+    ++ S  L   L + + HD+ +P+ ++    + L            + ++ +R  
Sbjct: 684 AQQALVSMESERLRNSLLAAVSHDLRTPLTSLIGMTDTLTRQQATLAPDVQDTVRAMREQ 743

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------- 108
           +      +  +            L       + +        R  +S             
Sbjct: 744 AQRMHALVVNLLDMARLQSRDTPLRLEWQSIEELVGASLAAMREPLSAHHVTVGSLSQLP 803

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                     ++L NL   A    P G  + +      +E   ++  NG           
Sbjct: 804 LVECDGVLIERVLCNLLENAAKYTPAGSTLHLHAAVHDDELRVAVSDNGPGVAPGAERRI 863

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214
           F +   G  ES      +       +   +  R+  E              L 
Sbjct: 864 FEKFTRGERESATPGVGLGLAVCEAIISAHHGRIWVEHTPGQASGAQFVFSLP 916


>gi|260173727|ref|ZP_05760139.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|315921992|ref|ZP_07918232.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313695867|gb|EFS32702.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 785

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 18/221 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI    +LL      +E      + + ++ I L+    
Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPSAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    +  + +                           
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYTVHKERVKEGVTLVFDNEEEDLLMEGDQNRI 539

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173
            +++ N    A       G++ +       +    +K  G     PEK   I +  V   
Sbjct: 540 MQVITNFLTNASKFT-YEGEIRLGFGRMDKDIRVYVKDTGIGI-EPEKVDHIFERFVKLN 597

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +      ++  +    +               + 
Sbjct: 598 SFAQGTGLGLSICRMIIEKIGGEIGVTSELGKGSTFYFTIP 638


>gi|322421355|ref|YP_004200578.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
 gi|320127742|gb|ADW15302.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M18]
          Length = 743

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 73/241 (30%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           M++ I  +   M+ V +L   I HD  + +  +   +EL    L++       ++ +  +
Sbjct: 465 MSEQIRQS-QKMESVGVLAGGIAHDFNNLLTGMMGFVELAQMKLNKDDQAQVFLEQVLSA 523

Query: 57  SMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +  A    +    F R    +   V+    + ++ +++   +     + +    EK+ + 
Sbjct: 524 AERAASLTRGLLAFSRKQINHPQPVNLNQIVDNLRKLLSPLVIPQVGLIIDLYREKLPVV 583

Query: 113 RER---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154
            +     +++ NL   A  ++P                                 S+   
Sbjct: 584 ADSSQLDQLITNLVTNARDAMPEGGELTIRTGLMEMTEEWVDAHGYGAVGGYAKMSVTDT 643

Query: 155 GNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           G       K   +        +     +    V  +  +++  L  +         +  L
Sbjct: 644 GAGMDEATKAHILEPFFTTKEVGKGSGLGLAIVYGIVKQHEGYLEIDSKPGVGTTFNVYL 703

Query: 214 E 214
            
Sbjct: 704 P 704


>gi|291302593|ref|YP_003513871.1| histidine kinase [Stackebrandtia nassauensis DSM 44728]
 gi|290571813|gb|ADD44778.1| histidine kinase [Stackebrandtia nassauensis DSM 44728]
          Length = 496

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 55/232 (23%), Gaps = 21/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------EDEVMQL 52
            K+    L S + +    +   H++ +P+  +    EL  +               +   
Sbjct: 245 EKSEKRALESEERMRRFVADASHELRTPLTTVRGFAELYRQRADVDPVEVAGLMRRIEDE 304

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                +     L   RL          +  L      +           +  + +     
Sbjct: 305 ATRMGLLVEDLLLLARLDAERPFRDAQVDLLTISVDTVTAAEVTAHGRHIELSTQGGPFL 364

Query: 113 RER-----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L NL   A    P   ++ + ++         +  +G      E+  ++
Sbjct: 365 VRGDELSLRQVLSNLVSNALRYTPPESQIEVRLRSDDTHVELEVVDDGPGM-TEEQVERV 423

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +                 +    V  L   +   +            +  L
Sbjct: 424 FERFYRADKARSRNAGGTGLGLAIVAALVDAHNGEVSVWSKPGEGAKFTVRL 475


>gi|291302970|ref|YP_003514248.1| histidine kinase [Stackebrandtia nassauensis DSM 44728]
 gi|290572190|gb|ADD45155.1| histidine kinase [Stackebrandtia nassauensis DSM 44728]
          Length = 857

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 20/223 (8%)

Query: 11  SMDLVA------LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAII 62
           + DL A       L + + H++ +PI A+   LE L +       + +      +     
Sbjct: 113 AADLAAADGQRRELVANVSHELRTPIAALQAMLENLADGVAKPSTQSLSAAVAQTERLGR 172

Query: 63  RLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +  +                  D    + D          +D  V V            
Sbjct: 173 LVTELLDVSRLDAGDTPLRRTGFDVRSFVDDAIAEATFHSDIDTHVDVPEGLCGYADVER 232

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             +++ NL   A      GG V+++ +   +  +  +   G      +    F +   G 
Sbjct: 233 LHQVMANLLANAVRHNRPGGTVSVTARHRDDCLLLEVADEGPGIAPADRARIFERFTRGE 292

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +   +   +          V+   L 
Sbjct: 293 RSTRDGGTGLGLAIARWIVELHGGGIEVTEASP-GAVIRVRLP 334


>gi|307150289|ref|YP_003885673.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306980517|gb|ADN12398.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1093

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 57/243 (23%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            + +     +    A           + + H++ SP+  I    ++L    ++    Q  
Sbjct: 696 REQLLIREQAAREAAESANRIKDEFLAVLSHELRSPLNPILGWAQMLKNYELDQPTTQKA 755

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        +         +       +   V    +       V    +   +  
Sbjct: 756 LCIIERNARLQAELIEDLLDVSRILRGKLNLNTTSVSLVVVIEAALETVRLAAQAKSIEL 815

Query: 114 ERA----------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                              +++ NL   A    P GG+V I ++         +K  G  
Sbjct: 816 RTQLETPVGRVLGDAARLQQVVWNLLSNAVKFTPSGGQVEIELEQIHGGVEIRVKDTGKG 875

Query: 158 ARFPEK-----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSA 211
                      + +  D +         +       L   +  ++  E   ++       
Sbjct: 876 ITPEFLPYIFDYFRQADSSTTRKFGGLGLGLAIARHLVELHGGKIWAESLGENQGATFIV 935

Query: 212 LLE 214
            L 
Sbjct: 936 NLP 938


>gi|160889853|ref|ZP_02070856.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
 gi|156860845|gb|EDO54276.1| hypothetical protein BACUNI_02284 [Bacteroides uniformis ATCC 8492]
          Length = 759

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDE 48
           +  +    + S +L        + L   + H+I +P+ AI    ++L            E
Sbjct: 519 LKDHEQELIESRELAEQAELKQSFLN-NMSHEIRTPLNAIVGFSDMLANEPEFSDEERQE 577

Query: 49  VMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
            + +I  ++   +  +             +   F        L  +     ++       
Sbjct: 578 FVDIINTNTKLLLKLVGDVLELSRIESGNLSFIFQRESVRQLLDDVYQTHSLLIQPPLQF 637

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGN 156
            +       +         ++L N    A+     G         S   E    ++  G 
Sbjct: 638 LKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKEGSIQLGYCCPSGMSEVHLYVEDTGI 697

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E+          S       +     +L+  +   R+     +      + +L 
Sbjct: 698 GIPHSEQKMIFERFYKRSEFSQGVGLGLSICVLIVEKMGGRIELRSEEGRGSRFTVVLP 756


>gi|148978826|ref|ZP_01815179.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145962137|gb|EDK27422.1| signal transduction histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 574

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+ AI   ++ L    +  E   ++   S S+ 
Sbjct: 199 ARKDAERANKAK--SEFLAMMSHELRTPLNAIIGLIDTLKSTQLTPEQQSILLNMSTSSE 256

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +                    +   +       + +     +   +  + +     +   
Sbjct: 257 LLLAIISDVLDFSKIESGCFSLAPQWSNVRDTVTFVLSEQKKAADDKGLTLTISSDIPEG 316

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL NL   A       G V +S++  ++    +++  G      +  +
Sbjct: 317 ELHYIDPSRLAQILFNLIGNAIKFTEH-GHVHVSIKYQQSSFYIAVEDTGIGISSQQLSS 375

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +        +       L    + R+  E            L 
Sbjct: 376 LFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKGSKFEVQLP 429


>gi|158523278|ref|YP_001531148.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512104|gb|ABW69071.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1079

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 63/234 (26%), Gaps = 29/234 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDE-------VMQLIRLSSMSAI 61
             M+ V  L   + HD  + +  I    EL L  +  +D        ++   R SS    
Sbjct: 704 QKMESVGRLAGGVAHDFNNMLNVILGYTELALQNMDKDDPLYNDLTEILDAARRSSDITR 763

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L F R       ++D    +  + +++   I  D  +    +     ++ + A++   
Sbjct: 764 QLLAFARRQTIAPRTIDLNETVEGMLKMLRRLIGEDIDLAWEPSSGLWLVNMDPAQVDQV 823

Query: 122 LFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L  +   +                  L                 + ++  +G        
Sbjct: 824 LANLLVNARDAIDGVGRVTIETDNAVLDEAYCADRPGFVPGEFVLLAVSDSGCGMDKN-T 882

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              + +    +        +    V  +  +N+  +               L +
Sbjct: 883 MDNLFEPFFTTKTVGKGTGLGLATVYGIVRQNEGFITVHSEPGQGTTFKIYLPR 936


>gi|39997909|ref|NP_953860.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984854|gb|AAR36210.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 882

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 64/242 (26%), Gaps = 33/242 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L +  L +L  L   I HD  + + AI  + +L    L+      + +  I  ++ 
Sbjct: 500 EKQLLHAQKLESLGVLAGGIAHDFNNILTAIVGNTDLALMRLNPESPVRDNLARIERAAN 559

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    K M             +D    + ++  +++  I+    ++ ++      +  +
Sbjct: 560 RASDLAKQMLAYSGKGKFVIEPIDLNRLVEEMTHMLQVSISKKAVLRFNFADSLPTVDAD 619

Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152
             ++   +  +   +                                           + 
Sbjct: 620 ATQLRQIIMNLVINASEAIADKSGVIAISTGCMQCDRKYLSNAWLNESIPEGLYVWLEVA 679

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G      E  ++I D    +      +    V+ +   +K  +              L
Sbjct: 680 DTGCGM-DRETVSKIFDPFFTTKFTGRGLGMAAVLGIVRGHKGAIRVYSEPGRGTTFKVL 738

Query: 213 LE 214
           L 
Sbjct: 739 LP 740


>gi|332703945|ref|ZP_08424033.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554094|gb|EGJ51138.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 848

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 63/240 (26%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + +       S    +   + + H+I +P+ A+    E L    +    ++ V  +   +
Sbjct: 356 LRQAKREAEESNRAKSEFLANMSHEIRTPLNAVLGLAERLSFITEPRERDEYVRMIKHSA 415

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104
                I    + L+    G +D      ++  ++E  ++  +                  
Sbjct: 416 HALLAIIDDILDLSKIEAGKLDVHEQEFELAALLEKVVSPYRYQAQEKGLELAVSVGNAV 475

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
               +    + +++L NL   A                +        +  +   G     
Sbjct: 476 PAWMLADPDKFSQVLTNLVSNAIKFTEEGSVEISVTNDNRDSRDMGLLVCVHDTGLGI-P 534

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ +           +     +       L      R+  E +       S  L 
Sbjct: 535 WDMQARLFNSFSQLDSSYSKSFGGTGLGLAISKRLVEMLGGRIWVESMPGKGSSFSFTLP 594


>gi|320354954|ref|YP_004196293.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
 gi|320123456|gb|ADW19002.1| integral membrane sensor signal transduction histidine kinase
           [Desulfobulbus propionicus DSM 2032]
          Length = 547

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 24/226 (10%)

Query: 12  MDLV--ALLCSRICHDIISPIGAIHNSL----ELLDEVGIED------------EVMQLI 53
             +     L + I H+I +P+  I        ELL E   E             ++ Q +
Sbjct: 320 EKMANIGRLAAGIAHEINNPLQLIQMQAGWIDELLQEENPEQIANLDEYRQSVGKIKQHV 379

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             +       L F R          + +    I  +  +  + +  + + +      +  
Sbjct: 380 NRAGTITHRLLGFSRKISAEYDVQINELIRETISFLESEANSNNITLNLHFDDALPVIRT 439

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           + +++   L      +  ++  GG++ I+   S  E    +  NG     PE   +I + 
Sbjct: 440 DGSQVQQALLNLIENSLDAVGSGGQIDITTSRSPKEVSIQIADNGPGI-KPEVLAKIWEP 498

Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +        +       +AH+    ++ E         +  L 
Sbjct: 499 FFTTKEPGKGTGLGLSICSDIAHKLGGEIIAENRPQGGAQFTLKLP 544


>gi|299133218|ref|ZP_07026413.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
 gi|298593355|gb|EFI53555.1| multi-sensor hybrid histidine kinase [Afipia sp. 1NLS2]
          Length = 745

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 62/237 (26%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++   + +     +   +   H+I +P+  I     LL +  +  E     +    S 
Sbjct: 226 LARDHAVSANRAK--SKFLAVASHEIRTPLNGILGMSTLLLDTPLNPEQAAYAKAVKTSG 283

Query: 61  IIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              +                  +     +   +   I      +     I +   +    
Sbjct: 284 EALMSLVEELLDFSKIEAGKINLEHRPFHLAGMIEEITELLAPRAQARQIEIACYIDERL 343

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV-TISVQDSKNENIFSLKINGNLARFPEK 163
             E    +    ++LLNL   A     RGG    +      NE  F ++  G     P+ 
Sbjct: 344 PLEVAGDAARLRQVLLNLASNAVKFTSRGGVALIVEPGIWPNEISFMVRDTGIGI-APDA 402

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I          +        +       +      R+  E +          + 
Sbjct: 403 QQRIFREFEQADEHIARQYGGSGLGLAISERIVRRMGGRIALESVPGEGTTFEVSIP 459


>gi|268316749|ref|YP_003290468.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334283|gb|ACY48080.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 646

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 71/236 (30%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSA 60
           A+     ++++     L     HD+ +P+ ++   ++ + E    +    +L++L+  ++
Sbjct: 408 AERHLQEINALK--THLLGATAHDLRNPLSSVQGLIQTVREELPPDSPHRELLKLAEAAS 465

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104
                                      VD +  + +     +D     ++  V     + 
Sbjct: 466 QRMLGTIEQLITASALESGRVTFRRMRVDLVELVAETVHFHQDRATRKQQQLVFLGPSTG 525

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +        +  + L NL   A    P G ++T+ +    +    S++  G      ++ 
Sbjct: 526 SCVVETDPEQLRRALTNLLTNALKFTPSGKRITVQLARHTDTVRLSVRDEGPGLTEADR- 584

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                S  +       +      R+  +         + +L 
Sbjct: 585 ARLFGYFQRLSAQPTGDEPSSGLGLAITKQIVERLGGRIEVDSTPGQGSTFTIVLP 640


>gi|229060996|ref|ZP_04198350.1| hypothetical protein bcere0026_30900 [Bacillus cereus AH603]
 gi|228718365|gb|EEL69999.1| hypothetical protein bcere0026_30900 [Bacillus cereus AH603]
          Length = 418

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 16/226 (7%)

Query: 4   NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
            I   +   +   + + L + I H+I +P+  +    +LL ++   +    + + +  + 
Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252

Query: 60  AIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  +      T   +                 +I  +   +    K+   + +   
Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              + +    L N+      ++  GG + I++Q  K+  +  +   G      +   +I 
Sbjct: 313 NANTEKLKICLTNIIQNGIEAMKNGGVLQINIQKIKDNIVIDIIDTGIGMSSQQIK-RIA 371

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +T     +       +  E    +  E         S  + 
Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417


>gi|253699180|ref|YP_003020369.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774030|gb|ACT16611.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 997

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 67/242 (27%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +    ++  ++ + +L   I HD  + + ++  + EL    L         ++ I +SS 
Sbjct: 617 EAQLLHVQKLESLGVLAGGIAHDFNNILMSVMGNAELALLTLPPESPARTNLRNIEISSQ 676

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    + M             +D    + ++  ++E  I+    V+ +       +S +
Sbjct: 677 RAADLARQMLAYSGKGNFVIEEIDVNKLINEMNHMLEVSISKKVDVRFNLDSGLPLVSVD 736

Query: 115 RAKILLNLFMVAHASLPRGGK----------------------VTISVQDSKNENIFSLK 152
             +I   +  +   +    G                                    F + 
Sbjct: 737 ATQIRQVIMNLVINASEAIGDRSGVISISTGAMECDAAFLSKLWLNDALREGTYLYFEVA 796

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +G          +I D    +      +    V+ +   +K  +            +  
Sbjct: 797 DDGCGMDPATL-AKIFDPFFTTKFTGRGLGMAAVLGIIRGHKGTIEVHSEPGKGSRFTVF 855

Query: 213 LE 214
           L 
Sbjct: 856 LP 857


>gi|168702308|ref|ZP_02734585.1| two-component sensor histidine kinase PhoR [Gemmata obscuriglobus
           UQM 2246]
          Length = 461

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 58/231 (25%), Gaps = 25/231 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRL 64
            +  +     +   H++ +PI  I +S+E L +   ED       ++ +   S      +
Sbjct: 227 QAERMRQDFVANASHELKTPIAVIKSSVEALQDGAAEDPHTLASFLEQVARESDRMTYLV 286

Query: 65  KFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
           K M                 V     + D  +             V              
Sbjct: 287 KDMLSLSRIESGSLGLEPRVVVLDREISDCMERHHPRADTKTLTLVEKPPPDAPANVAAW 346

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +++ NL   A    P GG++T+    + +   F ++  G      +       
Sbjct: 347 ADPDALRQVMDNLVDNAIKYTPNGGRITVRWGATADTVSFEVEDTGVGIPEGDVNRVFER 406

Query: 170 GNVESTIDS-----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                           +    V  L    + ++               L +
Sbjct: 407 FYRVDRARGRAEGSTGLGLSIVKHLVQAMRGQVRVNSKLGKGTTFRVTLPR 457


>gi|149276964|ref|ZP_01883107.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
 gi|149232633|gb|EDM38009.1| multi-sensor hybrid histidine kinase [Pedobacter sp. BAL39]
          Length = 537

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 61/210 (29%), Gaps = 18/210 (8%)

Query: 23  CHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS-VD 78
            H++ +PI ++  SL+LL+        +  ++LI  S+ S       +      +    D
Sbjct: 326 SHELKTPITSLKASLQLLERMKNKPYSEMHIRLIEQSAKSMNKLGYMVDELLNMSKLNRD 385

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVSWTGE----------KIDLSRERAKILLNLFMVAHA 128
            L        + +        V++    E                   ++++N    A  
Sbjct: 386 QLNLEKSTFNLHDLMSMCCNHVRLEGKYELMLEGEKELLVHADEHRIDQVIVNFVNNAVK 445

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST-IDSHDIQFY 184
             P   ++ + +    N     +  +G        P  F +    +      +   +  Y
Sbjct: 446 YAPESYQIRLKISSKDNVAKVLVSDSGPGIDGEVLPNLFDRYYRASHSEKSYNGLGLGLY 505

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  ++   +  E +          L 
Sbjct: 506 ICKEIITKHGGEIGVESVLGQGSTFWFTLP 535


>gi|327191887|gb|EGE58878.1| putative two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CNPAF512]
          Length = 867

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 73/246 (29%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  + A+  L   I HD  + + AI  S +  LL     +     L+ + 
Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDASFADLMEIK 523

Query: 57  SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106
                        L F R        ++    +GD+  +++                   
Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P+GG                   S   +++  +  +
Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPQGGTLTLRTRNLTAADVAAFNYSYMPAEDMVLVEV 643

Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     P+   +I +    +        +    V  +  ++   + PE         
Sbjct: 644 TDTGTGI-APDIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702

Query: 210 SALLEK 215
              L +
Sbjct: 703 RVFLPR 708


>gi|291458231|ref|ZP_06597621.1| sensory box histidine kinase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291418764|gb|EFE92483.1| sensory box histidine kinase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 471

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 60/217 (27%), Gaps = 20/217 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM----- 67
              + + HD  SP+ +I   LE + +      +E + +Q + + +         +     
Sbjct: 245 QFIANVSHDFRSPLTSIKGYLEAILDGTIPPEMERKYLQRLIVETERLEKLTGSLLSLNS 304

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLN 121
             +  F    S D    +  + +  E      +                      ++L N
Sbjct: 305 VEQKGFLIRSSFDVNQVIKSVCESFEMSCQKKRITFELTFSEKREPVYADHARIQQVLYN 364

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177
           L   A         + I       +   S+K +G      +    + +    ++    D 
Sbjct: 365 LIDNALKFSGENSVIGIRSGLRGTKVFVSVKDSGIGIPKKDLTKIWDRFYKTDLSRGRDK 424

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +    V  + H +   +     +      +  L
Sbjct: 425 QGTGLGLSIVKSIIHAHGENIDCVSTEGVGTEFTFTL 461


>gi|302382299|ref|YP_003818122.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192927|gb|ADL00499.1| multi-sensor signal transduction histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 524

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54
            K +   L     + A+  + + + H++  P+G+I N L     +L     +  ++  + 
Sbjct: 282 RKQLEARLRRDSRVSAMGEMAAALAHELNQPLGSIVNYLHGCRRMLAGQTPDSPLLPHLD 341

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------RVQVS 103
            +   A+     +R    +  + D++     +  ++++  A                   
Sbjct: 342 KAVEEALRAGHVIRHLRSFVSTEDNVRQPMTLVPLVDEACAFAMLGALSKDVRLTTEHQD 401

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARF 160
           +       + +  +++ NL   A  +     +  + V          + S+  NG     
Sbjct: 402 FDLVVSVNAVQINQVIHNLIRNALDATALVTEPRLHVTTGPHDGGMVMISISDNGPGI-A 460

Query: 161 PEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P+   ++ +  V S       +       +   +  R+  E         S  L 
Sbjct: 461 PDVEGRLFEPFVSSKGTQGMGVGLAICRTIVEAHHGRIWVEPAAAGGACFSFTLP 515


>gi|229590227|ref|YP_002872346.1| putative sensor kinase/response regulator fusion protein
           [Pseudomonas fluorescens SBW25]
 gi|229362093|emb|CAY48995.1| putative sensor kinase/response regulator fusion protein
           [Pseudomonas fluorescens SBW25]
          Length = 726

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
           + +       S  L A+  L   + HD  + +  I +S++ L + G+ +E  Q       
Sbjct: 346 LTQAEAALRQSQKLEAIGQLTGGVAHDFNNLLTIIRSSVDFLRQPGLSEERRQRYMGAVS 405

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +S      L F R         D+   + +I +++E        VQV        
Sbjct: 406 DTVERASKLTSQLLAFARRQPLNPEVFDAGQRVKNIGEMLESVTGARIHVQVQLPERPCH 465

Query: 111 LSRERAKILLNLFM---VAHASLP-------------RGGKVTISVQDSKNENIFSLKIN 154
           +  + ++    L      A  ++                 ++    +  +     SL   
Sbjct: 466 VRVDASQFETALINIALNARDAMDGQGTLTLRVANVDSMPRIRGDEEAHQPFVSISLADT 525

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      + F +I +    +        +    V   A ++   +          V +  
Sbjct: 526 GTGI-SSDTFERIFEPFFTTKAVGKGTGLGLSQVFGFAKQSGGNVDVASRPGEGTVFTLY 584

Query: 213 LE 214
           L 
Sbjct: 585 LP 586


>gi|190892012|ref|YP_001978554.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Rhizobium etli CIAT 652]
 gi|190697291|gb|ACE91376.1| probable two-component sensor histidine kinase/response regulator
           hybrid protein [Rhizobium etli CIAT 652]
          Length = 867

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 73/246 (29%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  + A+  L   I HD  + + AI  S +  LL     +     L+ + 
Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDASFADLMEIK 523

Query: 57  SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106
                        L F R        ++    +GD+  +++                   
Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P+GG                   S   +++  +  +
Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPQGGTLTLRTRNLTAADVAAFNYSYMPAEDMVLVEV 643

Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     P+   +I +    +        +    V  +  ++   + PE         
Sbjct: 644 TDTGTGI-APDIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702

Query: 210 SALLEK 215
              L +
Sbjct: 703 RVFLPR 708


>gi|182412287|ref|YP_001817353.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839501|gb|ACB73753.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 642

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 71/244 (29%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K +   L  +  + +L  L   I HD  + +  IH   E   +   E  VMQ       
Sbjct: 253 RKALEAELRQAHKMESLGTLAGGIAHDFNNLLAIIHGYSEFCLQGAAEPAVMQKSLQEIH 312

Query: 59  S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R A      VD      D+  ++ +         +    +   
Sbjct: 313 RAAQRASGLVKQILTFSRKAEIRYAPVDLNQLARDLVALMSETFPRTITFTLDLAEKLPP 372

Query: 111 LSRERAKIL---LNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLK 152
           L  ++ ++    LNL + A  ++P G                    S +  +     S+ 
Sbjct: 373 LLADQTQVQQIVLNLCVNARDAMPDGGSIVVSTAIRLGAELQSRHYSAEPVRRYACLSIA 432

Query: 153 INGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            +G+    PE  ++I +    +        +    V  +A  +   +  E          
Sbjct: 433 DSGSGM-TPEVCSRIFEPFFTTKQSNQGTGLGLAVVYGIATSHNGFIDVESTVGIGSTFR 491

Query: 211 ALLE 214
             L 
Sbjct: 492 VYLP 495


>gi|220915246|ref|YP_002490550.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953100|gb|ACL63484.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 498

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 61/229 (26%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
           A+     L +  L  L  + +   H++ + +  I     +    L +       ++ IR 
Sbjct: 255 AQKTREVLRADRLATLGGIAAGFAHELGNSLNVIRGYAAVTSRELPDDSPHRSDVEAIRR 314

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKID 110
               A   ++   +          +  +  I +     +            V       +
Sbjct: 315 EVTRAAGLIERFLVFARARTVHPLVQPVEPILREAVEVLGPAAAHAKVERAVEVEPGLPE 374

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK--INGNLARFPEKFT 165
           +  +     +  LNL + A  ++   G   ++V+  +      ++    G      E   
Sbjct: 375 VLADAELLRQAFLNLGVNAVQAMQDRGGGKLTVRALREPGGLVVEFHDTGPGI-DAEAAA 433

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +      +    V   A  +   +               L 
Sbjct: 434 HVFEPFFTTKASGTGLGLAIVRQAAEAHGGTVEVAGAPGAGATFRVHLP 482


>gi|29347830|ref|NP_811333.1| two-component system histidine kinase, FrrD [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572216|ref|ZP_04849620.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
 gi|29339732|gb|AAO77527.1| two-component system histidine kinase, FrrD [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838396|gb|EES66483.1| two-component system histidine kinase [Bacteroides sp. 1_1_6]
          Length = 482

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +   +     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGARQEGDMIDLYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISRDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|15616039|ref|NP_244344.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10176100|dbj|BAB07196.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 294

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 66/213 (30%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIR---------LK 65
           + +   H+I +P+ +I    + L++      +  + Q   +    AI             
Sbjct: 77  MAAFFAHEIRNPLTSIIGFTQYLEQNETIRSDPTIAQYTSIIKDEAIRMEALIQELLTFA 136

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKIDLSRERAKILLNL 122
              L       +D    +  +  + +          R  ++             ++L+NL
Sbjct: 137 KAHLDEENLSLIDVKRSIEKVILIQKMKQDKKEIRFRTDLAEGLYISGNVTRFEQVLINL 196

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQ 182
              A  ++   G ++I + + ++  I  +  +G      +    I      +  +   + 
Sbjct: 197 IKNAVEAIEEEGTISIKLSNDQDAVILVIHDDGPGIAEDQL-ENIFYPFFTTKDEGTGLG 255

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    +  L  +      VV++  + K
Sbjct: 256 LPICKTIIEAMEGTLEIKNHPKRGVVVTLTIPK 288


>gi|330866571|gb|EGH01280.1| osmolarity sensor protein EnvZ [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 436

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+++    + +++ I       
Sbjct: 211 MAEDVEQAGQEREL---MLAGVSHDLRTPLTRLRLSLELMNDNEFSEGMVRDIEDMDAIL 267

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F+R           L  L        +      R+ +              ++L 
Sbjct: 268 DQFLAFIRDGRDEEIEEVDLGHLVRDVVAPFNNDEDSIRLCLEPIPPFPLRRVSMKRLLT 327

Query: 121 NLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           NL   A      G +V   +S   +    + S+   G      E    F   + G+   +
Sbjct: 328 NLIGNARHHAGNGIEVAAYVSGDRNAPYVVLSVLDRGAGIDPSELDTIFNPFIRGDRARS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +         +     L 
Sbjct: 388 GKGTGLGLAIVKRIAAMHGGNVELRNRSGGGLEGRVRLP 426


>gi|319405628|emb|CBI79251.1| Sensor protein [Bartonella sp. AR 15-3]
          Length = 850

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 61/243 (25%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           M ++       M  V  L   I HD  + + AI  S + L             +  I+ +
Sbjct: 462 MLEDKMIQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNTHRSSDPAHADLINIKNN 521

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKI 109
           +  A   ++ +             I   ++   I +            K +         
Sbjct: 522 ANRAAALVQQLLAFSRKQTLRLEKIDFTELLSDIRNLILPLLGNNIQLKIIHGKDLWNVK 581

Query: 110 DLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKIN 154
                  ++++NL + A  ++                +  +   +          S+   
Sbjct: 582 IDQPSFQRVIMNLVINARDAMLDGGIVTIATNNITKQQSAEFNYAGFVVGEYVQLSISDT 641

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          ++ +    +        +    V  +  +    +  +  +         
Sbjct: 642 GTGISAV-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIVKQTGGYIYCDSQEGEGTTFHIF 700

Query: 213 LEK 215
           L +
Sbjct: 701 LPR 703


>gi|300172952|ref|YP_003772118.1| histidine protein kinase sensor protein [Leuconostoc gasicomitatum
           LMG 18811]
 gi|299887331|emb|CBL91299.1| histidine protein kinase, sensor protein ' [Leuconostoc
           gasicomitatum LMG 18811]
          Length = 451

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 69/227 (30%), Gaps = 21/227 (9%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR 63
           L    + +   +   H++ +P+ AI   +E L     ++     + ++++   S      
Sbjct: 224 LQIERMQSDFLANASHELKTPLTAITGFVETLQGPAGEDPNTRKQFLKIVADESERLSSL 283

Query: 64  LKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +  +          D           +       + +     +  +  VS       L  
Sbjct: 284 VIDILSLSRVKQKNDAVDTKLIIKNVVDEQWQHIKTMAATKHITFKNNVSQNFVVHGLKT 343

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
           +   IL NL + A     +GG VT+SV         ++K +G      +    F +   G
Sbjct: 344 DLETILQNLIVNAVKYNKQGGDVTVSVYKDHQHWQINIKDSGIGIPKNQQSRIFERFYRG 403

Query: 171 NVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        +   +    V  +  ++   +           +S  L 
Sbjct: 404 DESRQRTIANGTGLGLAIVNEIVSKHNGEVKVNSQVGVGTTISVTLP 450


>gi|228984474|ref|ZP_04144651.1| hypothetical protein bthur0001_11790 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228775177|gb|EEM23566.1| hypothetical protein bthur0001_11790 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 466

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKICISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    ++K  G             +    +          
Sbjct: 364 NAIRYTNQNGAIMITLRQIDDYCELNIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458


>gi|220917252|ref|YP_002492556.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955106|gb|ACL65490.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 595

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 65/232 (28%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIH-NSLELLDEVGIEDEV---MQLIRLS 56
           M         +      L   + HD+ +P+ AI   +  LL    + D     +  IR +
Sbjct: 356 MRDEQRLR-QAQAFEQQLIGIVSHDLRNPLNAILLGASSLLAREDLSDRNVASIARIRSA 414

Query: 57  SMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106
           +  A   ++ +                   D       +   +   +      V+ S   
Sbjct: 415 AERAARLIRDLLDLTRARLGGGIPVQPRPADLRQVAQQVVDELEPSYPDRPISVEASGDT 474

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    A+++ NL   A     RG  V + +     E   S+   G         T 
Sbjct: 475 HGQWDPDRIAQVIGNLVTNALKYGARGTPVAVRIAAEDGEVRLSVHNQGTPIPAETVRTI 534

Query: 167 IVDGNVES-TIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              G   +         +  + V  +A  +  R+     ++     +  L +
Sbjct: 535 FEAGGRAAPDPTGRSVGLGLFIVERIADAHGGRVEVHSSEEDGTTFTVWLPR 586


>gi|312115732|ref|YP_004013328.1| multi-sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220861|gb|ADP72229.1| multi-sensor hybrid histidine kinase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 805

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 72/243 (29%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           +          +  V  L   I HD  + + AI    +LL           + +  I+ +
Sbjct: 418 LTDEKAAQGQKLQAVGELAGGIAHDFNNLLTAIIGFSDLLLRRFRASDPAFKDLMNIKNN 477

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWTGEKI 109
           +  A   +K +           +++ L D+ +  +  +          K           
Sbjct: 478 ATRAAELVKQILAYSRRQTLRPAILRLTDVIEEFQATMGRTLGEKVKAKVQHGRDLWFVK 537

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154
               +  ++++NL + A  ++P GG +TIS  +                       ++ +
Sbjct: 538 ADEGQIFQVIMNLAVNARDAMPEGGDITISTANVSERESLLLKERGVERGEYVTVEVRDS 597

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     PE   +I D    +        +    V  +  +    +L +            
Sbjct: 598 GTGI-KPEHLEKIFDPFFSTKEVGKGTGLGLSTVYGIVKQTGGTILVDSEMGKGSSFRIF 656

Query: 213 LEK 215
           L +
Sbjct: 657 LPR 659


>gi|270339991|ref|ZP_06006671.2| sensor histidine kinase/response regulator [Prevotella bergensis DSM
            17361]
 gi|270333078|gb|EFA43864.1| sensor histidine kinase/response regulator [Prevotella bergensis DSM
            17361]
          Length = 1362

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 27/238 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            M +     +    +  L+ +   HDI SP+  I   L+ L +   + + +  + +   +A
Sbjct: 835  MRRKR-VEMEESKMRFLINAT--HDIRSPLTLILGPLKKLKDRLTDPDTLADLDIIDRNA 891

Query: 61   IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWT 105
                             M+    +    D +  +  I+ + +            +  S  
Sbjct: 892  QRLLLLVNQILDRRKIDMKQMHLHCSETDLVELIMGIKSLFQYNATQRDITLRLIHDSHP 951

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                       K++ NL   A    P GG++TI++++  N     ++ NG      E   
Sbjct: 952  YMVWIDKNNFDKVVSNLLSNAFKFTPDGGEITITLEEDANSVRMIVQDNGPG-FQDEHPD 1010

Query: 166  QIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLEK 215
            +  D   + +           I       + H +   +      D       +  L K
Sbjct: 1011 RFFDRFYQGSGTPVSVQPGTGIGLNLCRSIVHMHGGTIKAANRSDGHSGACFTVELPK 1068


>gi|256839211|ref|ZP_05544721.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256740130|gb|EEU53454.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 656

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI    +++ +    +   +L  +   +  
Sbjct: 432 AKEKAEEADHLKSAFL--ANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNIIQSNNE 489

Query: 62  IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +  +                     + +    + DI  +I   +  +  +++        
Sbjct: 490 LLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPENVELRLDDCQPFTL 549

Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +      ++L NL   A     + G +      ++ E  F +   G      +   ++ 
Sbjct: 550 YTDRSRLTQVLTNLLTNAIKHTKK-GYICFGYDVTEQEIRFYVTDTGEGIPDDQL-ERVF 607

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D  V      +   +       L  +   R+            S +  +
Sbjct: 608 DRFVKLTQWTNGVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFPR 656


>gi|253564264|ref|ZP_04841721.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251948040|gb|EES88322.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 534

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 66/229 (28%), Gaps = 25/229 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           ++   L     + + H+  +P+  I + +EL+ +       +            ++K + 
Sbjct: 1   MNQAKLR--FFTNVSHEFRTPLTLIISQVELMLQKNTIPPSLHNSIFRIRKHAQQMKLLI 58

Query: 69  LAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLS 112
                    D                 +   +     A  K +                 
Sbjct: 59  SELLDFRKFDQNYIQLKLSEQSLNTFLEEVYLSFSAYASQKSISYHLKLLEQDISIWIDD 118

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  K+L NL   A   +P  G+++I    + ++ + ++K +GN     E   +I D   
Sbjct: 119 WQMRKVLFNLLSNAFKHVPDKGEISILTSTTPDQVVIAVKDSGNGISKEE-QERIFDRFY 177

Query: 173 ESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++            I       +   +   +  E   +        L K
Sbjct: 178 QADNRNKALHVGTGIGLALTKSIIQLHHGTIEVESESNEGSCFIVKLPK 226


>gi|228899003|ref|ZP_04063277.1| hypothetical protein bthur0014_2320 [Bacillus thuringiensis IBL
           4222]
 gi|228963366|ref|ZP_04124528.1| hypothetical protein bthur0004_2500 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796326|gb|EEM43772.1| hypothetical protein bthur0004_2500 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860637|gb|EEN05023.1| hypothetical protein bthur0014_2320 [Bacillus thuringiensis IBL
           4222]
          Length = 314

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 72  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQEYLKILYM 131

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    +       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 192 STCPIIADHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E       +    + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIPK 308


>gi|218134348|ref|ZP_03463152.1| hypothetical protein BACPEC_02241 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989733|gb|EEC55744.1| hypothetical protein BACPEC_02241 [Bacteroides pectinophilus ATCC
           43243]
          Length = 299

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  E  + +     +       +      +   
Sbjct: 80  FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 139

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 140 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWMNLLD 199

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G + + ++  K+  +F L+  G           F +    +     + + +
Sbjct: 200 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 259

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 260 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 292


>gi|196231516|ref|ZP_03130374.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224369|gb|EDY18881.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1025

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 65/232 (28%), Gaps = 24/232 (10%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRLSSMSA 60
                +  L +L  +   I HD  + + AI  ++ L      E +    +   + ++  A
Sbjct: 635 EERQKADKLESLGVVAGGIAHDFNNLLTAILGNISLALLCAPEPQVGERLGAAKRATSRA 694

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRER 115
               + +         V     +  + +          +  + +              + 
Sbjct: 695 QELAQQLLTFAKGGAPVKQTASMSQLLRDTLSLTLHGSKAHIEFHVADDLWPVDIDPGQM 754

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS-------------KNENIFSLKINGNLARFPE 162
           ++++ NL M A  ++P GG + +  ++                    SL+  G      E
Sbjct: 755 SQVINNLAMNADQAMPAGGVLRVQAENVDLVTHSVSLGLDAGRWVKISLQDQGIGI-PEE 813

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D    +      +       +   +   +  +         +  L 
Sbjct: 814 YLKKIFDPYFTTKPKGSGLGLATAYSIVKNHHGVIAVDSKPGEGSTFTICLP 865


>gi|182412630|ref|YP_001817696.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839844|gb|ACB74096.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 929

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 57/220 (25%), Gaps = 23/220 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIRLKFMRLA 70
           +   + + H++ +P+  I    ++L    +  E  +     +   +    ++    + L+
Sbjct: 474 SQFLASVSHELRTPLNGILGYTQILRRDPLLGEKQREGIRVIHESAEHLLVLINDVLDLS 533

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSWTGEKIDLSRERAKI 118
               G ++   G   + +       V            +  +                ++
Sbjct: 534 KIEAGRIELHPGDFALAEFAAGAERVFAPRAREKNLLLETALAPDLPEFVRGDEARLRQV 593

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173
           + NL   A     +GG V      +     FS+   G      +   +I +         
Sbjct: 594 VFNLLGNAVKFTAQGGVVFSISSSAGGGLRFSVSDTGRGIAAADLS-RIFEPFTQVGEST 652

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  +       L      RL  E            L
Sbjct: 653 GAATGTGLGLAISRSLVERMGGRLQVESKPGWGSRFWFDL 692


>gi|134299696|ref|YP_001113192.1| histidine kinase [Desulfotomaculum reducens MI-1]
 gi|134052396|gb|ABO50367.1| histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 324

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 66/237 (27%), Gaps = 27/237 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
           N        +    L S I H++ +P+ +I   L+ + +     + + + LI   ++   
Sbjct: 81  NENLR-QLEESRRQLVSDISHELGTPMTSIQGYLKAMLDNVIEPDRQYLNLIYDKTLLVN 139

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------SW 104
             ++ +              F      D +  +     +      ++  +          
Sbjct: 140 QLVEDLFELSKLEANQVSFNFKEVTIQDLMANITRKFALDFKNSGINFMIDPIENLTPDN 199

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
                       ++++NL   A    P       +  I   +   E I  +  +G+    
Sbjct: 200 HIIMNVDPARIDQVMVNLINNAVKYTPTGGTIRIQCQIQNAEKDGEVIIKVIDSGSGIDE 259

Query: 161 ---PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G     +    +       +  ++   +  + + +        L 
Sbjct: 260 KSLPFVFDRFFKGTQSQKVGGTGLGLAIAKQIIIKHGGYIGVDSMVNKGSTFYFSLP 316


>gi|302689121|ref|XP_003034240.1| histidine kinase [Schizophyllum commune H4-8]
 gi|300107935|gb|EFI99337.1| histidine kinase [Schizophyllum commune H4-8]
          Length = 1636

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 73/247 (29%), Gaps = 37/247 (14%)

Query: 1   MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM 50
           +A+    ++ +  L  L        S + H++ +P+  I   +E     L +  +    +
Sbjct: 589 LAREED-SIRAQRLADLDSAKTAFFSNVSHELRTPLTLIGGPVEDAVATLPDGALRTS-L 646

Query: 51  QLIRLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           ++   +       +  +              F        +  L  + +   +   +   
Sbjct: 647 RMAMRNVQRLSRLVDSLMDFSKLAAKRLEGAFRPVKLGPFVADLASMFRDPVERSGMGYE 706

Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           V      E+     +     KI+ NL   A       G +TI V    +E  FS++  G 
Sbjct: 707 VVCDLDPEQPLCYIDTQFWEKIVFNLIGNAFKYT-MSGTITIMVSFDDHEATFSVQDTGI 765

Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIID----DHNV 207
                +   +I +          + +   I       L H +   L     D    +H  
Sbjct: 766 GIPAADL-DKIFNRFHRVACVSRSYEGTGIGLSLTKELVHLHGGELTVTSNDNPDGNHGS 824

Query: 208 VLSALLE 214
             +  L 
Sbjct: 825 TFTVTLP 831



 Score = 64.4 bits (155), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 9/77 (11%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 144  KNENIFSLKINGNLARFPEK---FTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRL 197
                  S+  +G   +  +    F +   G++ +         +  +    L +    R+
Sbjct: 1394 PIYIYVSVTDSGPGLQPEDLTILFRRFQQGSLAAKSDVFGGSGLGLFVSRKLCNLMGGRI 1453

Query: 198  LPEIIDDHNVVLSALLE 214
                   +  V S  +E
Sbjct: 1454 QVTSELGNGAVFSFFIE 1470


>gi|283850290|ref|ZP_06367579.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283574316|gb|EFC22287.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 666

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 60/243 (24%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIR- 54
           + +     + +  +  L  + + I H++  P+ AI      L LL E G+      L   
Sbjct: 416 LVEKDAQLIQASKMKTLGEMSAGIAHELNQPLNAIKMGSDYLRLLAEKGLPPPAGHLAAV 475

Query: 55  -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQV 102
                     A   +  +R     +  +   + + +  +              ++  + +
Sbjct: 476 TSQVSEQVDRAAAIIGHLRDFGRKSEPMPENVDINEPIKGVFTIIGHELALQDIEVVLDL 535

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------KNENIFSLKI 153
                    +    ++  NL + A  +L          +                  +  
Sbjct: 536 ETVAPIKAHANRLEQVFFNLVVNARDALTGDPGQNPPDRPRRIAIRSRTEGGRVAVDVAD 595

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      E+  +I +    +        +       +  +    +          V   
Sbjct: 596 TGCGIAEGERR-KIFEPFFTTKATGRGMGLGLAITYGIIKDYGGNIEVGDAPGGGSVFRL 654

Query: 212 LLE 214
              
Sbjct: 655 TFP 657


>gi|262403756|ref|ZP_06080314.1| sensor protein TorS [Vibrio sp. RC586]
 gi|262350260|gb|EEY99395.1| sensor protein TorS [Vibrio sp. RC586]
          Length = 967

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 56/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL E  +       +++ + S  
Sbjct: 457 AKARYQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WT 105
             L  +     Y+      + +      +   +     +  S                 T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQTHFDLYRLVRETHELMQSRALEKGIKLRYQFADGVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +    + I    +     F ++ +G      E+ 
Sbjct: 577 QFWQGDEIRIGQVLNNLVGNGIKFTEQGEVCIQICQDPAGQGIRFEVQDSGIGIAQEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                   +       L       +            S  L 
Sbjct: 637 SLFDAFTQAEAGRRKQGGTGLGLAISRKLVQAMGGEMRLSSEQGQGSCFSFTLP 690


>gi|300773129|ref|ZP_07082998.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759300|gb|EFK56127.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 582

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 68/226 (30%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           S   L     S + H++ +P+ ++   +++L  +  + E  +L  +   S     K   +
Sbjct: 353 SEEQLKNDFISIVSHELKTPLTSLMGYVQILQLILKDHEDERLTGILDRSKSQVSKMNSM 412

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------------- 116
             G+        G   +E+   +   +   +    +        E               
Sbjct: 413 ISGFLNVSRFEDGNLYLEKQSFEINDMISEIISDVSLTHSAHRIEFEPTQSVVLYADRDK 472

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             +++ NL   A    P   ++ +    +    + S+K  G   +  E   ++       
Sbjct: 473 LGQVVNNLLSNAIKYAPHSKEIFVKCALNSGNLLVSVKDRGLGIQQEEL-ERLFTRFYRI 531

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 TI    I  Y    +   +  R+  E  +    V    + 
Sbjct: 532 ENKQTKTISGFGIGLYLCAEIIKRHNGRIWAESEEGKGSVFHFTIP 577


>gi|162454050|ref|YP_001616417.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
 gi|161164632|emb|CAN95937.1| two-component sensor histidine kinase [Sorangium cellulosum 'So ce
           56']
          Length = 586

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 55/225 (24%), Gaps = 19/225 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF-- 66
           +    L     S + HD+  P+ AI     +L     +  +         S     +   
Sbjct: 357 MERERLREEWLSIVAHDLKQPLTAIAACAGMLSRRSEDAGIQAWSGKIVASVQRLERMTE 416

Query: 67  ---------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ER 115
                     R         D    L    ++          V  +        +     
Sbjct: 417 DLLDASKLEARRFSLERRPTDLRALLHAAVELAAAERPERAVVLAADEDVPPVHADAARM 476

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK------FTQIVD 169
            ++L NL + A         + +++     E   +++  G      E       F ++  
Sbjct: 477 DQVLGNLLLNAAKYGDPDAPIRVTLSLRDAELEVAIENRGPGISPDELPRLFQRFQRLSS 536

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               S      +  Y    +   +  R+  +   D        L 
Sbjct: 537 DPARSRPPGTGLGLYICKGIVEAHGGRIWAQSQLDETTSFHFTLP 581


>gi|163783845|ref|ZP_02178825.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880894|gb|EDP74418.1| sensor histidine kinase HpkA [Hydrogenivirga sp. 128-5-R1-1]
          Length = 338

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 19/217 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69
             S + H++ +PI  +   +E L+    +    + I ++          +          
Sbjct: 121 FVSNVSHELKTPIAVLKGVIETLEAEENDKGKKKFISMAQKRINQMNTLINDLLIIARLE 180

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                           +  + +    +     V    +V+   +     ++ + +L NL 
Sbjct: 181 SKEDKIIKTNINLKRFIDQIYEDLSHLTQEKNVKFYNKVNENFKIYGDEKKLSILLKNLI 240

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDS 178
             A       GKV +     K+  +  +K  G           F +    +      +  
Sbjct: 241 ENAIKYNKENGKVEVKGFLDKDYTVIEVKDTGIGIPKEALPLIFERFYRVDKSRSRNVGG 300

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +A  +K ++  E            L K
Sbjct: 301 TGLGLSIVKHIAEAHKGKVSVESTLGKGSSFKVYLPK 337


>gi|17229180|ref|NP_485728.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17135508|dbj|BAB78054.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 676

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 73/240 (30%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +   +    ++  L +   + I H++++P+  +      L       +       ++   
Sbjct: 432 LRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQRQRDYLQTIH 491

Query: 58  MSAIIRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            S    L  +      +                  I    IE ++E  ++    +++   
Sbjct: 492 DSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLVKIAENTIESLLEKALSEQVNLKLDLQ 551

Query: 106 GEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +              +IL NL   A    P GG VT+ +   ++ +IF ++  G     
Sbjct: 552 IDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRIWVEEDTSIFQVEDTGIGIPE 611

Query: 161 ------PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  EKF Q+         +   +       L   ++ R+  E       + +  + 
Sbjct: 612 EQLPLLFEKFQQLDTPY-RRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 670


>gi|293372871|ref|ZP_06619245.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292632160|gb|EFF50764.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 250

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44
           K+    L +  L+A          + + H+I +P+ +I     +L               
Sbjct: 9   KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 68

Query: 45  -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                  + +++LI      + I   +M  +F      + +  +    QV+        +
Sbjct: 69  GAINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIAPRLEFLK 128

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
              +   E         ++L N    A         K+       +      ++  G   
Sbjct: 129 EVDNIPLEINVDRERLIQVLTNFLNNASKFTETGYIKLGYIYLPDEGHVRIYVEDTGRGI 188

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+         ++       +      ++  +   R+  +         + +L 
Sbjct: 189 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGRIELKSEVGKGSRFTVILP 245


>gi|325678508|ref|ZP_08158123.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324109819|gb|EGC04020.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 373

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 73/235 (31%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +       +  L A +   I HD+ +P+ +I  +        + LDE   +     +  
Sbjct: 132 KEEAALLAQNEQLRANMLRSISHDLRTPLTSISGNASTLISGGDTLDESARQQIYTDIYS 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWT 105
            S     +    +       G +   I +  ++ ++++ +   +R           +   
Sbjct: 192 ESMWLIGMVENLLYATRIEDGRMQLNISVEILDDIVQEAVRHTERTHSKRNIIVDMLDEI 251

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +  +    ++++NL   A         VT++V+      + S+  +G      E+  
Sbjct: 252 IPVMADANLIVQVIVNLMDNAVKYSDENSDVTVTVRRENAYAVISVSDHGTGI-SDEEKE 310

Query: 166 QIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D        S        +       +   +   +       +  ++S  L 
Sbjct: 311 KVFDMFYTGGSRSSDSRRSLGLGLALCRSIITSHGGTISVSDNIPNGTIVSFTLP 365


>gi|282895906|ref|ZP_06303946.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
 gi|281199151|gb|EFA74020.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Raphidiopsis brookii D9]
          Length = 428

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 79/243 (32%), Gaps = 29/243 (11%)

Query: 2   AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDEVG-------IEDE 48
            +     L ++ L       +   S I H++ +P+ AI    ++L             D 
Sbjct: 154 RQRQQIQLQNLKLLEVSRLKSQFLSTISHELRTPMNAIIGFAQILLRPKFSQLSSVQTDI 213

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103
           + +++  +   +++  + +  +   +G +     + D+ +V+   ++  + +  +     
Sbjct: 214 LKRILNNAKNLSMLLNEVLDFSKIDSGRLALKPEIFDLSKVVNHAVSEIRSLVEAKKLSL 273

Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                       +     ++IL+NL   A     RG       + SKN    S++  G  
Sbjct: 274 SVEIELENTLVFNDPMRVSQILINLLSNAIKFTERGCIWVRVTEPSKNRIAISIRDTGIG 333

Query: 158 ARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +        + VD  +        +    +  L      +++ E       +    
Sbjct: 334 ISSQDCEHIFEAFRQVDQGISRKYPGMGLGLAIIDSLVKIMGGKIILESQLAVGSLFGVE 393

Query: 213 LEK 215
           L +
Sbjct: 394 LPR 396


>gi|239905563|ref|YP_002952302.1| sensor protein KdpD [Desulfovibrio magneticus RS-1]
 gi|239795427|dbj|BAH74416.1| sensor protein KdpD [Desulfovibrio magneticus RS-1]
          Length = 889

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVGI 45
           AK          L A L S + HD  +P+ AI  S E L                + +  
Sbjct: 654 AKKTLVEAEREKLRAALLSTVTHDFKTPLSAIAGSAESLLALGEATTPEVRRSLEENIAQ 713

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           E   ++ +  + +          +       ++ ++G                       
Sbjct: 714 EASRLERLVDNLLRIAALESGSVVPDIKLIPIEDVVGSALARLDATLAGHAVHLDIPDDL 773

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++L+NL   A    P G ++ +S     ++ +  ++  G      +   
Sbjct: 774 PPIPMDEVLMEQVLINLLENAAKHTPLGTEILVSAAIRGHKAVIEVRDAGPGLPPGDPEK 833

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +   G+  S    + +       +   +   +  +         + +L 
Sbjct: 834 LFERFQRGDRSS-TSGYGLGLAICRAVVKAHGGSITADRNRPAGAAFTVILP 884


>gi|229083560|ref|ZP_04215891.1| hypothetical protein bcere0022_2310 [Bacillus cereus Rock3-44]
 gi|228699757|gb|EEL52411.1| hypothetical protein bcere0022_2310 [Bacillus cereus Rock3-44]
          Length = 286

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 65/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S      L S I HDI +P+ +I   ++ L +     E+E ++ + + S 
Sbjct: 39  LEKVQVEAKKSQKARKQLLSSISHDIRTPLTSIIGYIDALKDGIAASEEEKLEYLEILSN 98

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------S 103
            +    + +   F           L + +    +         +                
Sbjct: 99  KSNGLKQLVDEIFNMAKLDADEFPLKEEQLDFSEITRESLIAFLPELSTNNIELRVNIPE 158

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                   S    + + NL   A      G  + I + ++ ++    +   G      + 
Sbjct: 159 TPSIITGDSFSLMRAISNLLKNAIHYGKPGKIIGIELLETTHDYQLLIWDKGPGIATNDL 218

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++   +           +       L  ++   +  E I          + K
Sbjct: 219 EHVFERMYRTDQSRNLSHGGSGLGLAIAKALIEKHGGEIWAESIPWEKTTFGFSIPK 275


>gi|224540211|ref|ZP_03680750.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518173|gb|EEF87278.1| hypothetical protein BACCELL_05124 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 393

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 64/228 (28%), Gaps = 17/228 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSA 60
               ++S+  L +   + I H++ +P+ AI     L+    +   +   M +I  ++   
Sbjct: 159 ERKNSISAERLKSTFIANISHEVRTPLNAIVGFSGLIATASDEEEKKLYMDIISENNERL 218

Query: 61  IIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGE 107
           +  +             +   +    + D L  L  + +V          +      +  
Sbjct: 219 LRLINDIFDLSQIEAGTLNFEYSEFDANDLLRELEGMFKVKLFNNPSVDLICEDSVQSII 278

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +   +++ NL   A      G        +  +E  F +   G      E+    
Sbjct: 279 MYSERQRIIQVMANLIHNAIKFTKSGKIRFSCRMEGTDEVYFYVSDTGIGIPKEEQQEIF 338

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  +    +      ++      R   E   +       ++ 
Sbjct: 339 SSFKKLDREVPGTGLGLTLSQIIIQNLGGRAGLESEVNKGSTFWFVVP 386


>gi|153854308|ref|ZP_01995607.1| hypothetical protein DORLON_01602 [Dorea longicatena DSM 13814]
 gi|149753083|gb|EDM63014.1| hypothetical protein DORLON_01602 [Dorea longicatena DSM 13814]
          Length = 450

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 69/235 (29%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + + F+           S + H++ +P+  I +  E L        ++      +++ 
Sbjct: 219 MFERLEFSFEKER---QFTSDVSHELRTPVAVIISQCEYLLENENLSAEDKEEIAVILKQ 275

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +  S      L   R   G    ++          + +  Q       ++  +Q     
Sbjct: 276 AKRMSKLTNEMLMIARNEQGEQHLMEKLDFGLLSELVIEELQTKAQEKNIEITLQKQDDL 335

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++++NL   A       G + + ++   ++ +  +K +G      E   +
Sbjct: 336 FMNGDQTLILRMMMNLITNAINYGKTNGHIHVILKVENDQIVGEVKDDGIGI-SEEHLDR 394

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I +                 +    V  + + +   +  E I+           K
Sbjct: 395 IWERFYRIDKSRSRENGGTGLGLSMVRWIVNLHNGTIHVESIEGIGTSFIFRFPK 449


>gi|125974350|ref|YP_001038260.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|125714575|gb|ABN53067.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
          Length = 463

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 72/230 (31%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
           N+   L + + L   + + + H++ +P+  + + +E + +              + I   
Sbjct: 232 NLAQTLENQEALRKKMSADMAHELRTPLATLQSHMEAMIDGIWETDADRLKSCYEEIIRI 291

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +       K  +          ++  +           +    +  +++++ G   ++  
Sbjct: 292 NKMVGDLEKLAKYESEGFVLDKTVFDMSALIRRIICNFEPEFKNNGIEIAFEGGTEEIFA 351

Query: 114 E---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +    +++++NL   A      GGKV IS +   +     +K NG      +    F ++
Sbjct: 352 DKDKMSQVIINLLSNALKYTQEGGKVEISAKSKGDVLEIRVKDNGQGIPEEDLPFVFERL 411

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +           I       +   +   +      +        L K
Sbjct: 412 YRADKSRNRKTGGAGIGLTIAKTIVEAHNGHIEVYSKINEGTEFLITLPK 461


>gi|324997180|ref|ZP_08118292.1| signal transduction histidine kinase [Pseudonocardia sp. P1]
          Length = 492

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 57/204 (27%), Gaps = 12/204 (5%)

Query: 24  HDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           H++ +PI  +   L +L   +     E + L+          +  M              
Sbjct: 286 HELRTPITIVRGHLGVLDARDPEDVTETVALVDDELERMNRLVSEMLALTRAEQPSLLRP 345

Query: 82  GLGDIEQVIEDFIA-------VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
              D+ ++  +           D +++               + ++ L   A      G 
Sbjct: 346 ESVDVAELTRELFDKLTGLADRDWQLESVAHVHARMDPHRITQAVVALADNATRFTGAGD 405

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVESTIDSHDIQFYYVILLAH 191
           ++ +  +   +     +   G      ++     +   G      D   +    V  +A 
Sbjct: 406 RIALGSEAVGDRLRVWVADGGPGVAPEDRHRVFRRFARGENAPRSDGAGLGLSIVEAIAT 465

Query: 192 ENKIRLLPEIIDDHNVVLSALLEK 215
            +  R+L E    H    +  L +
Sbjct: 466 THGGRVLLESTPGHGATFTLDLPR 489


>gi|302846523|ref|XP_002954798.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
 gi|300259981|gb|EFJ44204.1| volvoxopsin-5, sensory rhodopsin with histidine kinase domain
           [Volvox carteri f. nagariensis]
          Length = 1238

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---- 70
             S + H++ +P+  I    + L       I D+ ++ I     S    L  +       
Sbjct: 335 FMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLINDILDAA 394

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILL 120
                        V+    + D+  + +       ++          +  +     ++  
Sbjct: 395 SMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKRGVKLVNDLRENVPFVLGDTGRIIQVFH 454

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVEST 175
           NL   +       G ++I+     +E   ++   G      +          VD +V   
Sbjct: 455 NLIGNSCKFT-HNGFISIAASVKDDEVEVAVSDTGIGIPEDKFDQIFLAFEQVDMSVTRK 513

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  L   +  R+  +  +         L+
Sbjct: 514 YGGTGLGLNLVKQLVEAHGGRISVKSKEGQGTTFFFTLK 552


>gi|239628811|ref|ZP_04671842.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239518957|gb|EEQ58823.1| two-component system protein sensor histidine kinase [Clostridiales
           bacterium 1_7_47FAA]
          Length = 984

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 69/238 (28%), Gaps = 28/238 (11%)

Query: 5   ICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           +   L +  L     +   SR+ HDI +P+  I    E+    L +     + +  IRLS
Sbjct: 467 LNTALEAAKLANAAKSEFLSRMSHDIRTPMNVIAGMTEIADAHLQDPERVKDCLHKIRLS 526

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVS 103
           S   +  +  +             +   +     + +I  +    +   +      +   
Sbjct: 527 SHHLLGLINDVLDMSQIESGKVSIHMAPLSLPDLVREIIMITLPNVRAKRQKFKVHLMNV 586

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN--IFSLKINGNLARFP 161
                        +ILLNL   A    P  G++   V+  +N     F++   G   +  
Sbjct: 587 RQEHFYSDELRLRQILLNLLSNASKFTPENGQIVFEVEQLENNAALSFTVSDTGPGIKED 646

Query: 162 EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +         E       I+   +    V  L       ++   +          L 
Sbjct: 647 FQEHIFETFARERDSRTDRIEGSGLGLAIVKRLTELMDGDIILGSLPGQGTTFRVTLP 704


>gi|225575182|ref|ZP_03783792.1| hypothetical protein RUMHYD_03271 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037590|gb|EEG47836.1| hypothetical protein RUMHYD_03271 [Blautia hydrogenotrophica DSM
           10507]
          Length = 472

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 69/213 (32%), Gaps = 21/213 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAF------ 71
           + H+I +P+ +I    +LL         + + ++ I   +       + +          
Sbjct: 245 MTHEINTPLTSILGYAQLLKTANCTRQQQIKALENIESEARRIQQMYQKLMQLHKIRAEG 304

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF---MVAHA 128
                V     L    +   D +   ++V+V +  E+  ++ +   + + L      A  
Sbjct: 305 WKAEPVKLR-DLEADLRQDLDQLFAKQQVRVEFQWERQTVNSDYLLLYILLSNLLRNAAL 363

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQ 182
              RGG+V +  ++ ++  +  ++  G      E   ++ +                 I 
Sbjct: 364 YSDRGGRVRVCAENCEDGFVLRVQDWGRGI-PAEAVERVTEPFYRVDKSRSRQTGGSGIG 422

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            Y    +  +    L     ++    ++A   +
Sbjct: 423 LYLCRQIVEQLGGWLEIHSAEEKGTTVTARFPR 455


>gi|254412242|ref|ZP_05026017.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196181208|gb|EDX76197.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 365

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 68/237 (28%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVM 50
            + +   L+       L     +   H+  +P+  I +S +LL+       +   E  + 
Sbjct: 127 EERLRLALAKEKELNQLKTQFIAITSHEFRTPLTTISSSNDLLERYCRDTMDAKKEKHLR 186

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q+    +    +    + +    +G V+  +   D+ +   + +   +            
Sbjct: 187 QIKLSVNQMIQLLDDVLLIGRAESGKVELQLIPIDLVKFCHNLVEEIQTNAGDKYQIIFT 246

Query: 111 LSRERAKILLNL----------FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E  +  L++             A    P+GG VT  +  +     F +K +G     
Sbjct: 247 HQGEFTETCLDINLLRPILSNLLANAVKYSPQGGVVTFHLFSNDTTITFQIKDSGIGIPP 306

Query: 161 P---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 F      +    I    +    V      +   +  +   +     +  L 
Sbjct: 307 EAQKYLFESFHRASNVGKIKGTGLGLSIVKRCVDIHGGEISVDSEVNVGTTFTVKLP 363


>gi|153808319|ref|ZP_01960987.1| hypothetical protein BACCAC_02612 [Bacteroides caccae ATCC 43185]
 gi|149129222|gb|EDM20438.1| hypothetical protein BACCAC_02612 [Bacteroides caccae ATCC 43185]
          Length = 482

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 71/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLGITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +   N     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKQEDNIIELYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISRDFVEAHGGTLTVESELGKGSRFVIRLK 481


>gi|51244806|ref|YP_064690.1| Ntr two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50875843|emb|CAG35683.1| probable two-component system sensor histidine kinase (Ntr family)
           [Desulfotalea psychrophila LSv54]
          Length = 406

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 1   MAKNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------------- 42
           + K        S  +  +  L + I H+I +P+ +I    + L                 
Sbjct: 162 LEKRYQVKYAQSEKMATVGTLAAGIAHEINNPLTSISGFAQGLQRRVNKLVGRVEDELVA 221

Query: 43  --VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                 + ++             L F R        V     +GDI  +++  +   + +
Sbjct: 222 DFDEYTETIITECLRCRDIVKTLLTFSRPLESTRSIVRLNQCVGDILFILQHHLKDQQNI 281

Query: 101 QVSWTGEKIDLSR-----ERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKIN 154
            V  T +           +  ++++NL + A  ++  G     I+ +   N      K  
Sbjct: 282 SVKTTLDPNLPVILGDESQLKQVIINLVINAFDAMKDGGEIEIITRKGMDNTVKLIFKDT 341

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G+     E   +I D    +        I       +   ++  +      +     + L
Sbjct: 342 GSGI-AEEILEKIFDPFFTTKQVGQGTGIGLSTCYGIVSNHQGTITALNNQEKGASFTVL 400

Query: 213 LE 214
           L 
Sbjct: 401 LP 402


>gi|328473329|gb|EGF44177.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           10329]
          Length = 600

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 61/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV--GIEDEVMQL 52
           +       + +  L  L  + + I H++ +P+ AI +  E     L +      ++ +  
Sbjct: 357 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLSR 416

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VS 103
           I   +       + +R         +               +                 +
Sbjct: 417 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 476

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E    + +  ++L+NL   A  ++       +         +N+ +  +  NG    
Sbjct: 477 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 536

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + +  +   +       +       L            S  L 
Sbjct: 537 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 590


>gi|294498816|ref|YP_003562516.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
 gi|294348753|gb|ADE69082.1| two-component sensor histidine kinase [Bacillus megaterium QM
           B1551]
          Length = 475

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 63/220 (28%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAIIRLKFM---- 67
             +   H++ +P+  + +S+  L+            +++  ++         +  +    
Sbjct: 249 FVADASHELRTPLSVMLSSINALEMQEEVTEDPFSKKLINNMKAEVKRMTSLVSDLLTLA 308

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                    A       D++  + +  + +     +D ++                +++ 
Sbjct: 309 RSDSNKVEKAMMPFDITDAVQKVMESVETLAISKHIDLQLDTPEKLVVTGDQERLTQLIY 368

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
            L   A       G V I V    +E I  ++  G      E   +I D           
Sbjct: 369 ILLDNAIKYTTPHGSVNIQVVQHGSECILKVRDTGVGIHPDE-KDRIFDRFYRADKSRSR 427

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  H +       +   +K ++  E   +     +  L 
Sbjct: 428 QMGGHGLGLAIAKWIVETHKGKIDVESEQEKGSTFTVRLP 467


>gi|237723230|ref|ZP_04553711.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|293372791|ref|ZP_06619172.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|229447752|gb|EEO53543.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|292632300|gb|EFF50897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 660

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 68/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + K       S  L +   + + H+I +P+ AI    +LL   ++   ++E +Q+I  ++
Sbjct: 280 LEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 339

Query: 58  MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +  +  +                 +  +V        + + + +       V     
Sbjct: 340 ELLLKLINDILDLSKIEAGSVELKYENFDLAVYFNELAASMHRRVVNPQVRLVPVNPYEA 399

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL N    A     +G    +  +         ++  G      +K  
Sbjct: 400 CTVRLDKNRLAQILTNFVTNAIKYTSKGTIE-MGYEKIDENIRLYVRDTGIGI-PEDKKD 457

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++       +       +       +    +  +  E   D   +  A+L 
Sbjct: 458 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508


>gi|258405057|ref|YP_003197799.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797284|gb|ACV68221.1| PAS/PAC sensor hybrid histidine kinase [Desulfohalobium retbaense
           DSM 5692]
          Length = 736

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/244 (9%), Positives = 59/244 (24%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
            + +   L     ++ +  L   + HD  + +  I    ELL           E +  I 
Sbjct: 347 QRELEKQLHNAQRLESIGRLAGGVAHDFNNLLSPILGYSELLMRGKISQDRFYECIGHIY 406

Query: 55  LSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            S        + +             +D    + D+ +++      + +++ +       
Sbjct: 407 ESGKRGRELTRQLLAFGRKQNLALHGLDINQIIYDLLKLLRKTTRENIQIETTLNACSAG 466

Query: 111 LSRERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLK 152
              +  +I   +      A  ++P                     +      +     + 
Sbjct: 467 FLGDIGQIEQVIMNLTINAQDAMPNGGKLSIATDHIYADENFVENLPKMAPGHYVRLVIS 526

Query: 153 INGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+          I D    +        +    V  +  ++   +  E         S
Sbjct: 527 DTGHGM-DDHTQEHIFDPFFSTKGKEKGSGLGLATVYGIIKQHGGFIFVESSPHKGTSFS 585

Query: 211 ALLE 214
               
Sbjct: 586 IYFP 589


>gi|218886320|ref|YP_002435641.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757274|gb|ACL08173.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 686

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 62/245 (25%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEV 49
           M       + +  + +L  + + + H++  P+ AI    + L                EV
Sbjct: 422 MMDKDAQIIQAAKMKSLGEMSAGVAHELNQPLNAIRMGSDFLSLVIEQGLPVPQSRLHEV 481

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101
            + I      A   +  +R       +V   + +    + +   +     +Q        
Sbjct: 482 ARDICTQVDRATEIINTLRSFGRKADTVIEPLDINRPTRAVLPLVERQFLLQNVEVKLDL 541

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----------ISVQDSKNENIFSL 151
                          ++  NL   A  ++    +               +   N  + ++
Sbjct: 542 AEGLPPVRAHENRLQQVFFNLVTNARDAILDRARTDGGLRGVITIATRAEADGNAVVATV 601

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             NG          QI      + +      +    V  +  +    +  E  +      
Sbjct: 602 SDNGAGI-PEALREQIFQPFFTTKVTGQGMGLGLSIVYGIVRDYGGDIRIESTEGKGTAF 660

Query: 210 SALLE 214
              L 
Sbjct: 661 HVRLP 665


>gi|17229296|ref|NP_485844.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130894|dbj|BAB73503.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1287

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/251 (8%), Positives = 60/251 (23%), Gaps = 37/251 (14%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL- 55
            + +       +  +     + + H++ SP+ AI    +LL           + ++ I   
Sbjct: 882  LQRQTEQLTEANRMKDEFLAILSHELRSPLNAILGWAQLLQARRLSEAQTAKGLETIERN 941

Query: 56   ----------------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                                 +              +    I L    + I+    ++  
Sbjct: 942  AKAQTQLIEDLLDISRMIRGKLRLNVRTCNLIPIIETAIENINLAAQAKEIDLTFFLENP 1001

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHASLP----------RGGKVTISVQDSKNENIF 149
               +   +    S    +++ NL   A    P          +      +   + N    
Sbjct: 1002 ATENLPFQVSGDSERLQQVIWNLLTNAIKFTPSGGKVEVRLTKNPGCEQNELITNNYAQI 1061

Query: 150  SLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-ID 203
             +   G           F +    +  +  +     +    V  L   +   +      +
Sbjct: 1062 QVIDTGIGINSSFLPYVFDRFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVHVHSPGE 1121

Query: 204  DHNVVLSALLE 214
            +     +  L 
Sbjct: 1122 EQGSTFTVKLP 1132


>gi|16264910|ref|NP_437702.1| putative two-component sensor histidine kinase protein [Sinorhizobium
            meliloti 1021]
 gi|307312312|ref|ZP_07591947.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
 gi|15141049|emb|CAC49562.1| putative two-component sensor histidine kinase protein [Sinorhizobium
            meliloti 1021]
 gi|306899481|gb|EFN30112.1| multi-sensor signal transduction histidine kinase [Sinorhizobium
            meliloti BL225C]
          Length = 1229

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 66/238 (27%), Gaps = 30/238 (12%)

Query: 4    NICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54
                 L+   L         A L + I H++  P+ AI  +       +  +   ++  +
Sbjct: 988  QEELRLAQERLARAGQAASLAELSASIAHEVNQPLAAIVANSHACYRWLSADPVNIERAK 1047

Query: 55   LSSMSAII--------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            +++   I                 K      G     D +     +         +   +
Sbjct: 1048 ITTERVIRDAKSAADVVSRIRALFKQSVENRGILVLSDVISEACSLVAAEALRRRIRLNI 1107

Query: 101  QVSWT-GEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGN 156
             V            +  ++L+NL      ++        V + +    +E    +  NGN
Sbjct: 1108 DVETNLAPVTVDRIQVQQVLVNLIRNGMEAMDAVDDNKTVDVRMHQVDDEVRIEIGDNGN 1167

Query: 157  LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               FPE   +I +    +  +   +       +   +  RL  E  +         L 
Sbjct: 1168 GVAFPE---RIFEPFFTTKENGMGMGLAISRSIVEAHGGRLWAEKNEPRGARFVFTLP 1222


>gi|322436333|ref|YP_004218545.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321164060|gb|ADW69765.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 797

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 65/233 (27%), Gaps = 24/233 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSL------ELLDEVGIEDEVMQLIRLSS 57
                L  M       S + H++ +P+ ++  +L       L        +++Q+   ++
Sbjct: 559 TERRQLDRMK--DEFISTVSHELRTPLTSLRAALGLVTGGALATRPDKMKQMLQIAIANT 616

Query: 58  MSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------- 108
              +      + +    +GS +    +   E ++E    + +                  
Sbjct: 617 DRLVRLVNDILDIERIGSGSSELRPVMSAAEDLLERATKIHQGATFKHNVRFRVESNDVR 676

Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPE---K 163
                    + L NL   A    P  G++T++ +   + E  F +   G           
Sbjct: 677 VWADPDRILQALSNLISNAIKFSPPEGEITLTARYLDEQEAQFDISDQGPGIPQDRLENI 736

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +      +    +       +  ++  R+               L 
Sbjct: 737 FERFQQVDASDTRAMGGTGLGLAICRSIIAQHGGRIWASSPPGKGATFHFTLP 789


>gi|256830038|ref|YP_003158766.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579214|gb|ACU90350.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 571

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 65/243 (26%), Gaps = 28/243 (11%)

Query: 1   MAKNICFNL-------SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------- 42
           + ++    L        S  L ++  L + + H+I +P+  I+    L+ +         
Sbjct: 324 LQESDEQRLGAIHQMEHSQKLSSIGRLAAGVAHEINNPLAIINEKAGLMRDIMELRPDFP 383

Query: 43  -----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAV 96
                    + +++ +          L F +        +D    L +    +  +    
Sbjct: 384 EKDKFSKQIESILRSVDRCRGITHRMLGFAKRMDVKIEILDLNAVLEETLGFLEREAQYR 443

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLK 152
           +  ++   +     ++ +  +I      + + +L                  +    S++
Sbjct: 444 NVELKRELSKNLPSIATDHGQIQQVFLNILNNALAAVPDGGRIVLSSWNVDDHYVAISIE 503

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG                         +       +       +  +   +    ++ L
Sbjct: 504 DNGCGMSEETAKNMFEPFFTTKKEKGTGLGMSITYGIVKRLGGEIKVKSKLNEGTTMTIL 563

Query: 213 LEK 215
           L K
Sbjct: 564 LPK 566


>gi|88861073|ref|ZP_01135708.1| osmolarity sensor protein [Pseudoalteromonas tunicata D2]
 gi|88817001|gb|EAR26821.1| osmolarity sensor protein [Pseudoalteromonas tunicata D2]
          Length = 433

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 70/222 (31%), Gaps = 11/222 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M+++I        L   L + + HD+ +P+  I  + E++   ++   +  +  +  +++
Sbjct: 214 MSRSIAALEEDRRL---LMAGVSHDLRTPLTRIRLATEMMSQNEDYLRDGIIADIEDMNA 270

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +                   D    +G++       + +                    +
Sbjct: 271 IIDQFIEYLRHHKLADLEPDDLNALVGEVVSAELQHLRIITTDLNEGIPNVPLSHVAIKR 330

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
           ++ N+   A         V   +  +K     S+  +G      E    F     G++  
Sbjct: 331 VVTNMIENALRYSDGDIHVVTGIDKAKKYAYISVLDHGPGIPENELERVFQPFTQGDLAR 390

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHN--VVLSALLE 214
             +   +    +  +   +  +++ +   +      +S LL+
Sbjct: 391 GSEGSGLGLAIIKRIVDMHNGKIVLKNRPEGGLEAKVSFLLK 432


>gi|116750047|ref|YP_846734.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699111|gb|ABK18299.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 610

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 65/217 (29%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           L S + H++ +P+ ++  +  +L       +  + ++++  +   +    + +      +
Sbjct: 384 LISTVSHELKTPLTSVRLAAHVLLSEKLGPLNPKQVEILVAAREDSDRLYQIIENLLDIS 443

Query: 75  GSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                             + L   +++   ++     + +    +   +  E   +    
Sbjct: 444 RIETDRSKIRLSPVDTEQMVLQATDEMRSAYMDRKVTLVLDLPEDVPPVLAEAFYLESVF 503

Query: 123 FM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTI 176
                 A    P GG+VT+S +   +   FS++  G+       P  F +   G      
Sbjct: 504 ANLLSNALRHTPAGGRVTVSARRKGDAVQFSVEDTGSGIPAESLPHVFEKFYRGPGREER 563

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +       +   +   +            +  L
Sbjct: 564 RDSGLGLAIAREIVEAHGGTIGVVSEPGKGARFTFTL 600


>gi|320158979|ref|YP_004191357.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
 gi|319934291|gb|ADV89154.1| CheY-like receiver [Vibrio vulnificus MO6-24/O]
          Length = 881

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    + +     ++  + + H+I +P+  I    E+L +  +  +  +++     S+ 
Sbjct: 363 AKESAISANRAK--SVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEILGDIDTSSQ 420

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +      +      + +   E  I + +     +                     
Sbjct: 421 SLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATSKNIELHITMGEDIP 480

Query: 106 GEKIDLSRERAKILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            + +       ++L NL   A        +           D +    F +   G     
Sbjct: 481 AKVMADDHRIKQVLTNLVGNAIKFTKEGYISTFVNYQADEHDHQGYLTFKVTDTGIGIDQ 540

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  T                    +       L       L            S  + 
Sbjct: 541 AKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGELTATSTKGLGSCFSFTIP 599


>gi|296532223|ref|ZP_06894972.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
 gi|296267453|gb|EFH13329.1| sensor histidine kinase [Roseomonas cervicalis ATCC 49957]
          Length = 463

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 68/240 (28%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           +  +     +   + A   +   H++ +P+ +I   +E L      +   +   + ++  
Sbjct: 223 LLSDRTRERAVERMRADFVTNASHELRTPLASIMGFIETLRGPARDDPDAQAHFLGIMAE 282

Query: 56  SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S      ++ +                    + +   + E +     A D  ++     
Sbjct: 283 QSERMRRLIEGLLGLSRIELAEHQAPTERVDLAALARREAEAMAPILAARDVTLEQKLEE 342

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARF 160
             I    +  ++   +  +   ++  G +            + +   + S+  +G     
Sbjct: 343 GAIAAPADAEQLAQVVRNLLENAVRHGREGGTVRLCVARTGNPRPGIMLSIADDGPGI-A 401

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ +                 +    V  + + ++ +LL E  +         L 
Sbjct: 402 REHIPRLTERFYRVDKARTRKDGGTGLGLAIVKHIVNRHRGQLLIESQEGEGATFKVWLP 461


>gi|251794821|ref|YP_003009552.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247542447|gb|ACS99465.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 460

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSM-DLVAL---LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQL 52
           +A +I     S+  L  +     S + H+I SP+ +I    E L          +  + +
Sbjct: 218 LADSINRMAHSLSQLETMRRDFVSNVSHEIQSPLTSIGGFAEALRSEDLTEGDRNRYVGI 277

Query: 53  IRLSSMSAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           I+  S       + +                T  +D  +    +               +
Sbjct: 278 IKQESSRLSRLSENLLKLASLDSEHHPYKPVTYRLDRQLRDVVLSCEPTWLAKRLTVELL 337

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                      + +++ +NL   +    P  GK++  + +     +  +   G+     E
Sbjct: 338 MEETVIKADEDQLSQVWINLLTNSIKFTPEEGKISFQLSEKNGYAVVRISDTGSGIPEEE 397

Query: 163 ---KFTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    D + + +     +    V  +   +   +  E  +    V    L 
Sbjct: 398 RDRVFERFYKIDPSRDRSEGGSGLGLSIVKKIIDIHGGTIEIEDAE-QGAVFVVRLP 453


>gi|167725871|ref|ZP_02409107.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei DM98]
          Length = 927

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 543

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 544 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 664 TVTVALP 670


>gi|114777667|ref|ZP_01452627.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
            PV-1]
 gi|114551883|gb|EAU54417.1| multi-sensor hybrid histidine kinase [Mariprofundus ferrooxydans
            PV-1]
          Length = 1427

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 67/251 (26%), Gaps = 40/251 (15%)

Query: 2    AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
             +     +      A L         + + H+I +P+  +  +++LL+   +E     ++
Sbjct: 754  QRRADKEIKEAKEAAELANRAKSSFLAAMSHEIRTPLNGVVGTIDLLEHTRLESNQRDMV 813

Query: 54   RLSSMSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            R +  S++  +  +     ++             V     +    + ++   A +    +
Sbjct: 814  RTARDSSLTLMGIIDDVLDFSKIEAGKLELDDAPVSLQRVVEGCVESMQPLAAKNNIELL 873

Query: 103  SWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISV----------QDSKNENI 148
             +    I           +ILLNL   A                        ++   +  
Sbjct: 874  VFCEPAIPEVMGDLVRLRQILLNLTGNAIKFSAGLKSGRQGRVEVSAALESVEEQDVKIR 933

Query: 149  FSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEII 202
             S+K NG      +   ++                   +       L       +  E  
Sbjct: 934  LSVKDNGIGM-SADAQEKLFRPFVQAESSTTRRFGGTGLGLAISRRLVEMMGGHIEVESR 992

Query: 203  DDHNVVLSALL 213
             D     S  L
Sbjct: 993  LDQGACFSVAL 1003


>gi|148657835|ref|YP_001278040.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569945|gb|ABQ92090.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 483

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 56/240 (23%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
            +  +L   +     L + I H++ +P+  I  +L  L +    +E + +  I   ++  
Sbjct: 227 TMAASLEQAEQARRRLIADIAHELRTPLSVIQGNLRALLDDVFPLEKKEIATIYDETLLL 286

Query: 61  IIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +  +R            Y   VD    +     +        +          +   
Sbjct: 287 SRLVADLRELTLAEAGQLHLYRTPVDVTAIIARSVTLFAAHADEKRVTLQMDCAPDLPPV 346

Query: 113 ----RERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLAR 159
                  A++L NL   A    P            +         +     +   G    
Sbjct: 347 LADADRIAQVLNNLLSNALRHTPADGIVRIVASHAQQAGCATSDTDMICTRVIDTGPGIP 406

Query: 160 FPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +                +       L   +   +  E            L 
Sbjct: 407 ADDLPHVFDRFWRADRGRARAQGGAGLGLAIARQLVLAHGGAIGVESEPGKGACFWFTLP 466


>gi|300023636|ref|YP_003756247.1| multi-sensor hybrid histidine kinase [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525457|gb|ADJ23926.1| multi-sensor hybrid histidine kinase [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 868

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 70/246 (28%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            K +   +  +  + A+  L   I HD  + + AI    +LL           + ++ I+
Sbjct: 473 QKQLEDRVSQAQKMEAVGNLAGGIAHDFNNVLTAIIGFSDLLLQTHRPSDPSYKDIKNIQ 532

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GE 107
            ++  A   +  +           S+  L ++   +   +    R ++            
Sbjct: 533 SAANRAANLVAGLLGFSRKQTQQVSVFDLNELTSDMRAMLKTQVREKIDLQFQAGRDLWY 592

Query: 108 KIDLSRERAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSL 151
               S +  +++LNL   A  ++P                       +        +  +
Sbjct: 593 VRADSNQLYQVILNLARNARDAMPSGGKLTIRTQNVTERESQRMSPAAGFTPGEYVLLEI 652

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +I +    +        +    V  +  ++   + PE         
Sbjct: 653 SDTGTGM-SPEVMAKIFEPFFTTKGIGKGTGLGLASVYGIIKQSGGYIFPESELGKGTTF 711

Query: 210 SALLEK 215
              L +
Sbjct: 712 KIFLPR 717


>gi|94500954|ref|ZP_01307479.1| probable two-component sensor [Oceanobacter sp. RED65]
 gi|94426894|gb|EAT11877.1| probable two-component sensor [Oceanobacter sp. RED65]
          Length = 990

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 23/233 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + S  L ++  L + + H+I +PI  I    + L     +  + ++          
Sbjct: 741 EEELVHSERLASVGRLAAGVAHEIGNPITGIAMLAQDLKYESDDPTIHEIGEQVLEQTQR 800

Query: 63  -------RLKFMRLAFGYTGSVDSLIGLGDI-------EQVIEDFIAVDKRVQVSWTGEK 108
                   + F              + +           ++ E    V            
Sbjct: 801 VSRIVQSLVNFSHTGNHLQHQEQGPVDIRQCAQDAIDLLKLSEKEQGVMFENHCPDDAIV 860

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +   +   ++ +NL   A  + P    + +S +  ++     +   G     PEK  +I 
Sbjct: 861 LGDEQRLQQVFVNLLSNARDASPDNTCINVSAELEQHTVTIRVVDEGEGI-APEKIERIF 919

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALLEK 215
           +    +        +    V  +  E+  ++  +   D        +   L +
Sbjct: 920 EPFFTTKEVGKGTGLGLALVYSIIEEHYGQISIQSPVDKTTQTGTAVIINLPR 972


>gi|260439185|ref|ZP_05793001.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876]
 gi|292808387|gb|EFF67592.1| sensor histidine kinase [Butyrivibrio crossotus DSM 2876]
          Length = 347

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  E  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G + + ++  K+  +F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQADGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|312111458|ref|YP_003989774.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216559|gb|ADP75163.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 442

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 56/219 (25%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL-- 69
             +   H++ +P+    +SLE+++    +       +V   ++         +  +    
Sbjct: 220 FVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVFDDMKDELRRMTKLINDLLWLA 279

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                       +      +  L    + + +   +     +              +++ 
Sbjct: 280 RSDANAIELTKEWFLLPPVIDELIRKCRSLAEQKHIKFVTNIQKDMAIYGDKERIIQLIF 339

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175
            L   A       G++ I+V+  +      +   G      +    F +      +    
Sbjct: 340 ILLDNAVKYNTENGQIKIAVERDRKNVNIEISDTGIGIPVEQQALIFERFYRADPSRSRK 399

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + I       +   +   +  +  +         L 
Sbjct: 400 QQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438


>gi|242278021|ref|YP_002990150.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242120915|gb|ACS78611.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 652

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 20/246 (8%), Positives = 53/246 (21%), Gaps = 34/246 (13%)

Query: 3   KNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           KN    +      A   SR        + H+I +P+  I   L+L++      +  + + 
Sbjct: 250 KNALERVEHEKAKAETASRTKSEFLANMSHEIRTPLNGIMGMLQLMESETQTPKQGEYVN 309

Query: 55  LSSMSAIIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
            +  ++                      +             +            + +  
Sbjct: 310 AAMQASKRLNNVLSDILDLARVEAGKLNLYNKEFNPADELKHVFELFEVTSRHSGVNLKL 369

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKI 153
           ++                +IL N+   A      G      ++           +F+++ 
Sbjct: 370 KLPPELPLTVTGDPARLQQILTNIVGNALKFTHEGHVLITAQLLPRSTPGNCHILFTVED 429

Query: 154 NGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +                       +       L       +  E   +    
Sbjct: 430 TGVGIADDKMNLLFQSFTQASEGYTRQYQGAGLGLSICKRLTELMGGTIAVESNVEQGTT 489

Query: 209 LSALLE 214
               + 
Sbjct: 490 FYISIP 495


>gi|126736534|ref|ZP_01752275.1| periplasmic sensor signal transduction histidine kinase
           [Roseobacter sp. CCS2]
 gi|126714072|gb|EBA10942.1| periplasmic sensor signal transduction histidine kinase
           [Roseobacter sp. CCS2]
          Length = 592

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
           + +     + +  L AL  + + + H+   P+ A+ +      E L+   + +    + R
Sbjct: 354 LERTQTDLIQAGKLSALGQMSAALSHEFNQPLAAVKSYADNAAEFLERDRLPEAQDNISR 413

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104
           +S M+  +      L         +   L     + +    ++ R+              
Sbjct: 414 ISKMADRMATISAHLRNFARRPQQATGPLLFNAVIQDALAVIEMRLTSEGGQVAYTPPEA 473

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +       ++++NL   A  ++    +  +++  +    +  ++  G      +  
Sbjct: 474 EIWVVGGHVRLQQVIVNLINNALDAMEDQSQPVVTLTLADTTLL--VRDTGPGIEPTKVR 531

Query: 165 TQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I D    +      +         +  +    L      D   V S  L+
Sbjct: 532 N-IFDPFFTTKAPGKGLGLGLSISYNIVSDFGGTLSAANHPDGGAVFSVTLQ 582


>gi|307152859|ref|YP_003888243.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
 gi|306983087|gb|ADN14968.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
          Length = 477

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 75/238 (31%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEV 49
           +A  +   +S + L ++        + + H++ +P+  +  +LE L+     E  + D  
Sbjct: 238 LADELN-RMSEL-LASVDRKRRTFLANVSHELRTPVSNVKVTLEALERGAISEPELCDRF 295

Query: 50  MQLIRLSSMSAIIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           +Q  +         ++ +                + S+ SLI        +  F    K 
Sbjct: 296 IQTAQQEINRLSRLVQDLLYLGSVEAGVTPLEKQSVSIRSLINRAVQTMELRTFPLRLKI 355

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                  +    S    + LLN+   A        K+ IS   + N+ +  +  +G    
Sbjct: 356 DNDIPDLQLQVDSERLLQALLNILENAIKYSRYPPKIAISGYIAGNQMLIKITDSGMGIS 415

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +     +   +       L   +  ++  + +      ++  L 
Sbjct: 416 QEDLSHIFEEFYRSDSSRHSEGTGLGLAISKRLVELHGGKITADSVVGQGTTITICLP 473


>gi|298374757|ref|ZP_06984715.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298269125|gb|EFI10780.1| His Kinase A domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 656

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI    +++ +    +   +L  +   +  
Sbjct: 432 AKEKAEEADHLKSAFL--ANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNIIQSNNE 489

Query: 62  IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +  +                     + +    + DI  +I   +  +  +++        
Sbjct: 490 LLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPENVELRLDDCQPFTL 549

Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +      ++L NL   A     + G +      ++ E  F +   G      +   ++ 
Sbjct: 550 YTDRSRLTQVLTNLLTNAIKHTKK-GYICFGYDVTEQEIRFYVTDTGEGIPDDQL-ERVF 607

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D  V      +   +       L  +   R+            S +  +
Sbjct: 608 DRFVKLTQWTNGVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFPR 656


>gi|228906048|ref|ZP_04069938.1| hypothetical protein bthur0013_2330 [Bacillus thuringiensis IBL
           200]
 gi|228853595|gb|EEM98362.1| hypothetical protein bthur0013_2330 [Bacillus thuringiensis IBL
           200]
          Length = 314

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 72  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQEYLKILYI 131

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    +       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 192 STCPIIADHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E       +    + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIPK 308


>gi|262199542|ref|YP_003270751.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262082889|gb|ACY18858.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 688

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 56/237 (23%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDE-------------V 43
           + ++       ++ +  L + + H+I +P+  +  ++E    LLD+              
Sbjct: 268 LLEDRLRRKQKLEALGTLAAGVAHEINNPLTWLMGNVECLKALLDDHASMLASSMTDELG 327

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQ 101
            I  E+                F R      G VD +  L     +   E         +
Sbjct: 328 EIVVEMRDGTERIRRIVAGLKPFTRSDEDTFGPVDLIQVLDTAVDLAGNEIRHRARLVRR 387

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGN 156
           +              +  +NL + A  ++  G      +     Q         ++  G 
Sbjct: 388 IRKVPPVYGNQARLTQAFVNLLVNAAQAISHGHATDNRIRIVTSQREDGRVCVIVEDTGV 447

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                               +   +       +       +               L
Sbjct: 448 GIPATVIDRIFEPFFTTRAPERTGLGLSICHSIIDSCGGEIEVTSSPGAGTRFCVYL 504


>gi|254471778|ref|ZP_05085179.1| phosphate regulon sensor protein PhoR [Pseudovibrio sp. JE062]
 gi|211958980|gb|EEA94179.1| phosphate regulon sensor protein PhoR [Pseudovibrio sp. JE062]
          Length = 455

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 65/240 (27%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +++        + A   +   H++ +P+ ++   +E L      +   +D+ + ++   +
Sbjct: 206 RDLTEARRLERMRADFVANASHELRTPLASLTGFIETLQGPAKGDPKAQDQFLGIMLDQA 265

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSWT 105
                 +  +         V           +I                           
Sbjct: 266 ERMRRLIDDLLSLSRIEMKVHVQPETLVDLGLIMRHSVESLLPVAKENGVELNVTVPDEP 325

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARF 160
            E    + E  ++  NL   A      GG+V ++ +           I  ++  G     
Sbjct: 326 AEIRGENDELVQVFNNLVENALKYGSSGGRVDVTCRPDPDSTETPHWIAEVRDYGPGI-D 384

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   ++ +            +    +    V  +   ++ RL  E   D        + 
Sbjct: 385 PEHLPRLTERFYRVDVVTSRQMKGTGLGLAIVKHILTRHRARLEIESKPDEGACFRVFIP 444


>gi|220909140|ref|YP_002484451.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865751|gb|ACL46090.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1391

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/252 (9%), Positives = 61/252 (24%), Gaps = 41/252 (16%)

Query: 4    NICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55
                     +L   +     + + H++ +P+  I    +LL     E     E ++ I  
Sbjct: 982  QEQTAREQAELANRMKDEFLAVLSHELRTPLNPILGWCKLLQTRPFEPARAMEALRTIER 1041

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            ++   +  ++ +            L         I        R+       ++    ++
Sbjct: 1042 NAQLQVQLIEDLLDFSKIVQGKLPLQIAPVQLSSIITAALESVRLAAEAKTIQLQTCLDQ 1101

Query: 116  A------------KILLNLFMVAHASLP---------------RGGKVTISVQDSKNENI 148
                         +++ NL   A    P                G +      ++ +   
Sbjct: 1102 HPILVWGDANRLQQVVWNLLSNAIKFTPEGGQVEVRLESGEGSPGKRAHPMPVNTSSYAQ 1161

Query: 149  FSLKINGNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
              +   G               +  DG +        +    V  +   +  R+  E   
Sbjct: 1162 ICVIDTGKGIASDFLPHVFDYFRQEDGAMTRRYGGLGLGLAIVKQIVEMHGGRIWAESPG 1221

Query: 204  -DHNVVLSALLE 214
                   +  L 
Sbjct: 1222 LGEGATFTVRLP 1233


>gi|187918616|ref|YP_001884181.1| nitrogen regulation protein NtrB [Borrelia hermsii DAH]
 gi|119861464|gb|AAX17259.1| nitrogen regulation protein NtrB [Borrelia hermsii DAH]
          Length = 386

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 77/235 (32%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSS 57
                    +  L A       I H+I +P+GAI  +L+LL +       + ++      
Sbjct: 138 KHKEELFRRAEALAAFTRHARNIAHEIKNPLGAIDINLQLLKKELDRQGIKSIKANNYFK 197

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
           +      +  +    +  +V  +  + + + + +   +V   +      + I        
Sbjct: 198 IIKEEINRMDKTVTDFLLTVRPIKIIPEKKDITDIIKSVYNLLNPELRNKDIKFILNLKK 257

Query: 115 ----------RAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160
                       ++++N+   A  +L     +  ++ IS+ +++ +   ++K NGN    
Sbjct: 258 VSLVLIDEKLIRQVIINIVKNAEEALLESNKKIKRIEISIHENEEKIYINIKDNGNGI-K 316

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            E    I      +      I       +  E+   +  E  +      +  L K
Sbjct: 317 NETKDDIFKPQFSTKESGSGIGLTISYKIVKEHGGEIFVESKEMKGTSFTITLPK 371


>gi|150010361|ref|YP_001305104.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149938785|gb|ABR45482.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 656

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI    +++ +    +   +L  +   +  
Sbjct: 432 AKEKAEEADHLKSAFL--ANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNIIQSNNE 489

Query: 62  IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +  +                     + +    + DI  +I   +  +  +++        
Sbjct: 490 LLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPENVELRLDDCQPFTL 549

Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +      ++L NL   A     + G +      ++ E  F +   G      +   ++ 
Sbjct: 550 YTDRSRLTQVLTNLLTNAIKHTKK-GYICFGYDVTEQEIRFYVTDTGEGIPDDQL-ERVF 607

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D  V      +   +       L  +   R+            S +  +
Sbjct: 608 DRFVKLTQWTNGVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFPR 656


>gi|46579829|ref|YP_010637.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602702|ref|YP_967102.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
 gi|46449244|gb|AAS95896.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562931|gb|ABM28675.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris DP4]
 gi|311234166|gb|ADP87020.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio vulgaris RCH1]
          Length = 579

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 20/230 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVM 50
           + KN+     +  L AL  L + + H+I +P+ A+    +           +      ++
Sbjct: 338 LEKNLS---EAEKLAALGTLAAGVAHEIRNPLSALRGFAQYFAKKLVGRQPDETYAQTMV 394

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109
           +     +      L   R       +V     + DI  +   D    +  ++VS   + +
Sbjct: 395 READRLNRVITDLLYLSRPRAMDARAVSLGQLVADIGNLVRFDLEKRNIALKVSLGPDIV 454

Query: 110 DLSRER-AKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKF 164
               +   + +LNL + +  +L         +              +  +G      ++ 
Sbjct: 455 WADEDALKQAVLNLVLNSIDALEGLATGEREIHVSSAQGDGGTWVFVGDSGPGMSALQRE 514

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +      +    V     E+  R   +        +S    
Sbjct: 515 QAF-EPFFTTKKKGTGLGLALVHKTMREHDGRAQIDSEMGRGTTVSLFFP 563


>gi|332526607|ref|ZP_08402714.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
 gi|332110870|gb|EGJ11047.1| histidine kinase [Rubrivivax benzoatilyticus JA2]
          Length = 601

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 55/219 (25%), Gaps = 22/219 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           +   + I H++ +P+ +I    EL++      +      L    A    + +        
Sbjct: 366 SEFLAAISHELRTPLTSIRGFAELMEHRLDNPKFRDQAGLIRKGAEYLNQLLGEILDLAK 425

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKIL 119
                    +  V+    +                 +   +        +       +IL
Sbjct: 426 VEAGSMTLSSEPVNLGSLVQGTVDFYALTAAGKGLTLAVEIDPEAPQVIVADGLRVKQIL 485

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDG--NVES 174
            NL   A    P  G+V + V+   +  +  ++  G           F +   G   V  
Sbjct: 486 NNLLSNAIKFTPA-GRVDVMVERLGDRVLMHVEDTGPGIAPELHETIFERFRQGSARVSY 544

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +       LA      L            +  L
Sbjct: 545 EHGGTGLGLALSRALAQLMGGTLTLASEPGRGARFTLAL 583


>gi|327485718|gb|AEA80124.1| Sensor protein torS [Vibrio cholerae LMA3894-4]
          Length = 984

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   +                     +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L  +            L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLDSQLGQGSCFWFTLP 690


>gi|323490237|ref|ZP_08095453.1| integral membrane sensor signal transduction histidine kinase
           [Planococcus donghaensis MPA1U2]
 gi|323396077|gb|EGA88907.1| integral membrane sensor signal transduction histidine kinase
           [Planococcus donghaensis MPA1U2]
          Length = 425

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 69/223 (30%), Gaps = 13/223 (5%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS 59
           N       M+ V+   + + H++ +P+ +I   ++L+ E       + E  +++     S
Sbjct: 196 NSLLKHEKMETVSHFAAAVSHELRNPLQSIKGFVQLMKEYEYSRDKQIEFHEMVLNEIES 255

Query: 60  AIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           A   +    +    T         S +    L  +              ++    E +  
Sbjct: 256 AEDLIDDYLVYAKPTYGQLEASNVSCEVQHVLKIMMPYANGKGIEMHITEMDRDAETLMD 315

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  + ++N+      ++P GG + I+V+ +       +   G      E   ++ +  
Sbjct: 316 RHKFQQAIVNIIRNGIEAMPNGGMLAIAVKSTPAIVSIHVTDEGIGMTKEEVR-RLGEPY 374

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S I    +       +  +    +  +   D          
Sbjct: 375 FSSKIKGTGLGMMVTYSIVSQMNGHIFVDSEKDKGTEFRLEFP 417


>gi|290512340|ref|ZP_06551707.1| sensor histidine kinase/response regulator [Klebsiella sp. 1_1_55]
 gi|289775335|gb|EFD83336.1| sensor histidine kinase/response regulator [Klebsiella sp. 1_1_55]
          Length = 761

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L     M  V  L   + HD  + +  I  SLEL++    +   +     ++ 
Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R    +  +V     L ++ +++   +     +++           +
Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLCELMRHSLPATLSLEIEAQSPAWPAWID 506

Query: 115 RAKIL---LNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++    +NL M A  ++              +VT S    ++     +  +G+     
Sbjct: 507 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               ++ +    +        +    V     ++  R+  E        +   L +
Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621


>gi|284047510|ref|YP_003397849.1| histidine kinase [Acidaminococcus fermentans DSM 20731]
 gi|283951731|gb|ADB46534.1| histidine kinase [Acidaminococcus fermentans DSM 20731]
          Length = 576

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           ++I        L     + + H++ +P+ +I    EL+       +  I      + + +
Sbjct: 343 QDITEAREREQLRRDFTANVTHELKTPLTSISGFAELMAAGMYQKKEDITHFGQLIRKEA 402

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
           +    +    + L+       ++L     +  +I+  +                   E  
Sbjct: 403 ARLLEMINSIIFLSRIEEVPAEALQEEVPLGGLIQSVVEFMDPFCKDRQVTIHCHLTEDK 462

Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++ +NL          GG V +++    ++ + ++K  G      +   ++
Sbjct: 463 VRGSSSMLREMAMNLIDNGVKYNRPGGHVYVTMGRDGDQVVLTVKDTGIGI-PEDVQERV 521

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +                 +    V  +  +++ ++      +    +   L +
Sbjct: 522 FERFYRVEGSRSKQSGGSGLGLSIVKHIVEQHRGKIRLTSRVNEGTSIEVQLPR 575


>gi|52080825|ref|YP_079616.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52786196|ref|YP_092025.1| ResE1 [Bacillus licheniformis ATCC 14580]
 gi|52004036|gb|AAU23978.1| two-component sensor histidine kinase ResE [Bacillus licheniformis
           ATCC 14580]
 gi|52348698|gb|AAU41332.1| ResE1 [Bacillus licheniformis ATCC 14580]
          Length = 593

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 76/237 (32%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +        + E+ Q+I  
Sbjct: 353 MTEERRL----DKLRKDFIANVSHELRTPISMLQGYSEAIVDDIASSEEEKKEIAQVIYD 408

Query: 56  SSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--- 107
            S+     +  +       A   + +V+ +      E+V   F  V     ++ +     
Sbjct: 409 ESLRMGRLVNDLLDLARMEAGHISLNVEPVELREFFERVFRKFYGVAGDKNITLSHNLDL 468

Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                +    +  ++L NL   A      GG V + VQ +++    ++K +G+     + 
Sbjct: 469 HEAKFVFDPDKMEQVLTNLIDNAIRHTNAGGTVHVDVQSAESGLKIAVKDSGSGIPEEDL 528

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +    +           +    V  +   +   +    + +     +  + +
Sbjct: 529 PFIFERFYKADKARTRGKGGTGLGLAIVKNIVDAHNGSITVHSMLNEGTSFTFYIPR 585


>gi|89099786|ref|ZP_01172659.1| hypothetical protein B14911_21793 [Bacillus sp. NRRL B-14911]
 gi|89085533|gb|EAR64661.1| hypothetical protein B14911_21793 [Bacillus sp. NRRL B-14911]
          Length = 1175

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 69/226 (30%), Gaps = 17/226 (7%)

Query: 3    KNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            K     L   ++   V  L + I H+I +P+ ++   L+L+ + G  ++  +   +    
Sbjct: 950  KASEAMLQKSEMLSAVGQLAAGIVHEIRNPLTSLKGFLQLMMQTGSYNK--EYTEVMMSE 1007

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEK 108
                   +           ++  L ++ +VI+D                  V      + 
Sbjct: 1008 FGRLEAIIDEFLVLAKPKAAVYDLVNVSKVIQDVCVLLDTQAIMQNISITAVHQDALPKI 1067

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +E  ++ +N+   A  ++  GG + I         +  +   G      +   ++ 
Sbjct: 1068 RGNEKELKQVFINMVKNAIEAMENGGTILIETGMEGKNLLVKISDQGKGIPEKQLN-KMG 1126

Query: 169  DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +       +   +K  L    I+         + 
Sbjct: 1127 EPFYTTKEKGTGLGVMVSFRIIENHKGTLNYASIEGKGTTAEIRIP 1172


>gi|116748069|ref|YP_844756.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697133|gb|ABK16321.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 753

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 26/238 (10%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            KN+   L +S  L +L  L + + H+I +PIG +    +L+ E      +E   ++ I 
Sbjct: 499 RKNLERQLINSEKLASLGTLAAGVAHEINNPIGIMLGFCDLMLERMDPGTMEYNDLKTIE 558

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTG 106
              +     ++ +      +   +    L +  Q +   +     +              
Sbjct: 559 RHGLHCKSIVERLLSFARMSEEAEDRCDLNENIQEVVSVVKHTLDINRIRLETALASDLP 618

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKF 164
                SR   ++LLNL   A  ++   G  ++       + +    +   G      E  
Sbjct: 619 PVNIDSRGLQQVLLNLVGNAIHAMDGDGVLRIISRTGRREEDVELIVADTGCGI-RKELI 677

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH------NVVLSALLE 214
            +I D    +    +   +       +  +    +      +         V +  L+
Sbjct: 678 AKIFDPFFTTKKVGEGTGLGLSVSYGIVSKYGGTVECASHAEEDGPGETGTVFTVTLK 735


>gi|323692079|ref|ZP_08106326.1| sensor protein [Clostridium symbiosum WAL-14673]
 gi|323503879|gb|EGB19694.1| sensor protein [Clostridium symbiosum WAL-14673]
          Length = 466

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           M++N+   L  ++    +     S   H++ +PI +I   +ELL+           + ++
Sbjct: 224 MSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGMALNEETTHDFLK 283

Query: 52  LIRLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            I+  +M     +  + +                  + +    +  +          +  
Sbjct: 284 RIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVIHK 343

Query: 103 SWTGEKIDLS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +    I    R+  ++ +NL   A       G++ +  +    + + +++ +G      
Sbjct: 344 QFESFAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLTVRDSGVGI-PQ 402

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +    V  + +     +  E         +  L 
Sbjct: 403 ESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVRLP 461


>gi|322383664|ref|ZP_08057415.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151876|gb|EFX44819.1| two-component sensor histidine kinase YclJ-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 425

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           MA  I     +  L     S I H++ +P+ +I    E L      +       + +I  
Sbjct: 193 MADEIQ---KNDKLKNEFISSISHELRTPLTSIKGWSETLVSGEFQDPEETRLGINIISK 249

Query: 56  SSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +   I  ++ +                       +  +G           +   VQ   
Sbjct: 250 ETDRLIGLVEDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEE 309

Query: 105 TGEKIDLS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               I        +IL+N    A    P+GG +T+S++    E + +++  G        
Sbjct: 310 EPIHIMGDGNRIKQILINSIDNAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPEIL 369

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     ++   + +       L      ++  E +      ++    
Sbjct: 370 KHVTEKFFKGTSRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFP 420


>gi|307311785|ref|ZP_07591424.1| histidine kinase [Sinorhizobium meliloti BL225C]
 gi|306899526|gb|EFN30156.1| histidine kinase [Sinorhizobium meliloti BL225C]
          Length = 633

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 24/223 (10%)

Query: 15  VALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLI------------RLSSM 58
              L + I H++  P+GAI  + E    +L+    + +++Q I             +   
Sbjct: 407 AGALSASIAHELNQPLGAIRINAETAALMLERPNPDLKLIQQILADIRDDDQRAGDIIDR 466

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLSRERAK 117
              +  K   + +      D +     I         V      S  G           +
Sbjct: 467 MRGLLRKRSEIDWQEFDLNDVVRSAIHILHPEAQRRDVTVSSVASAQGLPVRADRVHVQQ 526

Query: 118 ILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           ++LNL + A  ++       R      ++ +   +   S+   G+     +    I D  
Sbjct: 527 VILNLAINAMDAMLQAPTAERNLMFQTTMVERNEKVEVSISDTGSGIPSDKLSN-IFDAF 585

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +      ++      +L  +       V   +L 
Sbjct: 586 YTTKPTGTGLGLSIARVIIEIYGGKLWADNRPQGGAVFRFVLP 628


>gi|307322353|ref|ZP_07601714.1| histidine kinase [Sinorhizobium meliloti AK83]
 gi|306892000|gb|EFN22825.1| histidine kinase [Sinorhizobium meliloti AK83]
          Length = 633

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 24/223 (10%)

Query: 15  VALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLI------------RLSSM 58
              L + I H++  P+GAI  + E    +L+    + +++Q I             +   
Sbjct: 407 AGALSASIAHELNQPLGAIRINAETAALMLERPNPDLKLIQQILADIRDDDQRAGDIIDR 466

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLSRERAK 117
              +  K   + +      D +     I         V      S  G           +
Sbjct: 467 MRGLLRKRSEIDWQEFDLNDVVRSAIHILHPEAQRRDVTVSSVASAQGLPVRADRVHVQQ 526

Query: 118 ILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           ++LNL + A  ++       R      ++ +   +   S+   G+     +    I D  
Sbjct: 527 VILNLAINAMDAMLQAPTAERNLMFQTTMVERNEKVEVSISDTGSGIPSDKLSN-IFDAF 585

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +      ++      +L  +       V   +L 
Sbjct: 586 YTTKPTGTGLGLSIARVIIEIYGGKLWADNRPQGGAVFRFVLP 628


>gi|258592608|emb|CBE68917.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 441

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 69/224 (30%), Gaps = 20/224 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSA 60
               L AL  L + + H+I +P+G I + +EL      E        + +++I   +  A
Sbjct: 215 QVEKLSALGTLSAGLAHEINNPLGIITSRVELALMDAQETEIPKQFIDDLKVIEKHAQRA 274

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRER 115
               + +             + +  + +     +          ++         +    
Sbjct: 275 ARVARGLLSFSRPATGQRLSLDMNGVIEESLLLIERQLEKEQIVLERRLAPSLPKVKGNV 334

Query: 116 AK---ILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQIVDG 170
           ++   +LLNLF  A  ++  GG++ +  +           +   G+         QI D 
Sbjct: 335 SQLEEVLLNLFTNAREAMTAGGRLRVESRLGADDRTVQILVADTGDGV-PEMLVQQIFDP 393

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E+  RL       +       L 
Sbjct: 394 FFTTKQNGTGLGLSISYGIVKEHGGRLDVRSEAGNGTTFVMTLP 437


>gi|255012375|ref|ZP_05284501.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 656

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK        +    L  + + H+I +P+ AI    +++ +    +   +L  +   +  
Sbjct: 432 AKEKAEEADHLKSAFL--ANMNHEIRTPLNAIVGFSQVIADEEDAETRHELSNIIQSNNE 489

Query: 62  IRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +  +                     + +    + DI  +I   +  +  +++        
Sbjct: 490 LLQRLIEDVLDISKIESNTLTFVLANHEMKALMKDIYSIILLRMPENVELRLDDCQPFTL 549

Query: 111 LSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +      ++L NL   A     + G +      ++ E  F +   G      +   ++ 
Sbjct: 550 YTDRSRLTQVLTNLLTNAIKHTKK-GYICFGYDVTEQEIRFYVTDTGEGIPDDQL-ERVF 607

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D  V      +   +       L  +   R+            S +  +
Sbjct: 608 DRFVKLTQWTNGVGLGLAISKALVTKLGGRIEVTSQQGVGSTFSVIFPR 656


>gi|254416130|ref|ZP_05029885.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177063|gb|EDX72072.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 477

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 70/237 (29%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51
           +A+     L+ +    +      S + H++ +P+  +   L+  L         + E + 
Sbjct: 238 LAQTFDNMLNRLFEAWEQQRQFVSNVSHELRTPLTIVSGYLQSTLRRGKNLTPPQQEALG 297

Query: 52  LIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +    +   +  L+               +         + ++ ++   +        ++
Sbjct: 298 IAAAEADRTVQLLQDLLDLARVDHGRMHFHLELFVLNDLVAEVVEMAVQYSNRVIDSDIN 357

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
               ++   R+R  ++LLNL   A         VT+ +     +    +   G      +
Sbjct: 358 RELIEVLADRDRLKQVLLNLIDNAVKYSDPDQPVTVKLDKPGEQVRIQVCDRGQGIPLAQ 417

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   G+     +     +    V  L      ++          V + LL 
Sbjct: 418 QSRIFERFYRGDENRARSPGGTGLGLSIVKTLVEGMGGQVSVRSQLSQGSVFTVLLP 474


>gi|167464605|ref|ZP_02329694.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 473

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           MA  I     +  L     S I H++ +P+ +I    E L      +       + +I  
Sbjct: 241 MADEIQ---KNDKLKNEFISSISHELRTPLTSIKGWSETLVSGEFQDPEETRLGINIISK 297

Query: 56  SSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +   I  ++ +                       +  +G           +   VQ   
Sbjct: 298 ETDRLIGLVEDLLDFSKLQSGNLKISMIKLKLNPLVKEIGAQFGASCARKQIRLEVQAEE 357

Query: 105 TGEKIDLS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               I        +IL+N    A    P+GG +T+S++    E + +++  G        
Sbjct: 358 EPIHIMGDGNRIKQILINSIDNAMKFTPQGGVITVSLKQEGKEALITVQDTGEGIPPEIL 417

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     ++   + +       L      ++  E +      ++    
Sbjct: 418 KHVTEKFFKGTSRQGNGLGLSICKELTELQGGKMTIESVFGEGTTITIRFP 468


>gi|160939833|ref|ZP_02087180.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437267|gb|EDP15032.1| hypothetical protein CLOBOL_04724 [Clostridium bolteae ATCC
           BAA-613]
          Length = 465

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 82/239 (34%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50
           M+K++   LS ++    +     S   H++ +PI +I    ELL+   I+D+ +      
Sbjct: 223 MSKDVKEYLSQIEKEKQIRQEFFSNASHELKTPITSIQGYAELLESGMIQDDGLKLDFAK 282

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSW 104
           ++ + ++    +    + ++   +   + +     I  ++++ +          +V +  
Sbjct: 283 RIKKEAAGMTGLINDILMISRLESMDAEVMFSDVRISVLLQEIMDSLKPLAASCQVFLHV 342

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             + + +     ++          A      GG+V I+V +  ++ +  +K NG      
Sbjct: 343 DCKPLCIRANLQQMKELFTNLATNAIKYNRPGGQVWITVGEQGDDMLVRVKDNGVGI-PK 401

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +    V  + +     +      D     +  + 
Sbjct: 402 ESLDRIFERFYRVDKGRSRKQGGTGLGLSIVKHIVNFYHGTIHVTSELDKGTEFTVTIP 460


>gi|148243509|ref|YP_001228666.1| two-component system sensor histidine kinase [Synechococcus sp.
           RCC307]
 gi|147851819|emb|CAK29313.1| Two-component system sensor histidine kinase [Synechococcus sp.
           RCC307]
          Length = 484

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 65/238 (27%), Gaps = 25/238 (10%)

Query: 3   KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
                 +S ++  A       S I H+  +P+  +   ++  L     ++ +    + ++
Sbjct: 245 SEFNHMVSRLEQAATNQKQFASTISHEFRTPLTVVSGFIQSVLNRADDLKPQFRDALTVA 304

Query: 57  SMSAIIRLKFMR-------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +  A+   + +                     ++ +                +  ++   
Sbjct: 305 NQEALRLNRMLSDLLDLSRADNRQLRILQEPFAIKAACLQSLKLARAAFTNPITDQLAQV 364

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA----- 158
              E I       + L NL   A         + + +Q    E   ++   G        
Sbjct: 365 EEVEAIGDHDRLVQCLENLIGNAVKYSEPDRPIALDLQVDNFEVAVTVVDQGQGIANDQL 424

Query: 159 -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            R  E+F +     +     S  +    V +L       +    +       +  L++
Sbjct: 425 ERIFERFQRAEGVTLRQGQSSSGLGLSIVKMLVDGMGGSITVHSVPGEGSRFTIRLKR 482


>gi|172062322|ref|YP_001809973.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MC40-6]
 gi|171994839|gb|ACB65757.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           ambifaria MC40-6]
          Length = 1034

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 64/244 (26%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +   + + D       + L + + H+I +P+  I  +LELL+   ++      +R 
Sbjct: 483 LVQQLEEAVRAADSANAAKSSFLAA-MSHEIRTPLNVILGNLELLERSALDATQHGRVRT 541

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              SA   L  +     ++      + +  IE  + + +  +                  
Sbjct: 542 LHASATSLLALVSDILDFSKIEAGAMSVESIEFDVIETVERELHAFATIAKAKGLQLFCE 601

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155
           +    T          A++L NL   A      G          +          ++  G
Sbjct: 602 IHACGTQRMRGDPTRLAQVLRNLLSNALKFTAVGRVTVRVAVVVEGHDAPELSIEVEDTG 661

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                  +       +              +       L      R+  E          
Sbjct: 662 IGIGAEHRRKLFKAFSQVDASITRRYGGTGLGLALCDRLVAAMAGRIAVESEAGVGSRFK 721

Query: 211 ALLE 214
            LL 
Sbjct: 722 VLLP 725


>gi|20090591|ref|NP_616666.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19915625|gb|AAM05146.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 742

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 68/243 (27%), Gaps = 31/243 (12%)

Query: 3   KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQ 51
           K     L     +A +         + I H++ +P+ +I    +LL E     + ++ ++
Sbjct: 480 KKAVEKLIQEKQIAEIANRTKSEFLANISHELRTPLNSIIGFSDLLCEQIFGELNEKQLR 539

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKR 99
                S S    L  +      +      + L   E             +         +
Sbjct: 540 YAGNISKSGKHLLSLINDILDLSKVEAGKMELDYTEFELAGKLNTIKNLLAPIADRKSIQ 599

Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           +++       +L  +    A+I+ NL   A         V +  +   ++   ++   G 
Sbjct: 600 IEIEVDSRLTNLYADEAKFAQIMYNLVDNAIKFASENSPVNVGARMKGDKVEITVTDIGA 659

Query: 157 LARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             +  ++                      +  Y V  +   ++  +    +       + 
Sbjct: 660 GIKPEDQHKLFKPFSQVDYFASKQHQGTGLGLYLVKQIVQMHRGYVWFRSVPGEGSTFAF 719

Query: 212 LLE 214
            + 
Sbjct: 720 AIP 722


>gi|310817854|ref|YP_003950212.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309390926|gb|ADO68385.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 508

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 58/241 (24%), Gaps = 32/241 (13%)

Query: 5   ICFNLSSMDLVALLC----------SRICHDIISPIGAIHNSLELL------DEVGIEDE 48
               L+  ++ A L           + + HD+ +P+ A+  S  L               
Sbjct: 251 REMALTFNEMAATLAQRQEEQLTFLAGVAHDLRNPLAALKMSTALAGSGRNEASPERIQR 310

Query: 49  VMQLIRLSSMSAIIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           ++ L+R         +  +  A                   +                 +
Sbjct: 311 MLTLVRRQVARLDRMVGDLLDAARIEAGRLELHIEERDAREMARSVVELFEASGQGRELR 370

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                             ++L NL   A    P G  V ++V   ++E I ++   G   
Sbjct: 371 LSVPEVPVPLRCDGTRMEQVLNNLVSNALKYSPTGTSVDVTVSRQQDEAILTVTDRGIGL 430

Query: 159 RFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E    +    + +           +       +   +  R+  E            L
Sbjct: 431 -SAEAKHHLFSPFMRANNARDCAPGAGLGLSVARRIVEAHGGRIEVESQPGQGATFRVRL 489

Query: 214 E 214
            
Sbjct: 490 P 490


>gi|226947567|ref|YP_002802658.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226842367|gb|ACO85033.1| sensory box histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 615

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            KNI     S     L+    S I H++ +P+  I  +++LL       +   +D+ ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKL 405

Query: 53  IRLSSMSAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           I+ +    +  +  +                      +       V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      +      GG + ++V+D        +K  G     
Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNSIKFTNAGGNIFVNVKDCGENVYVHVKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +   +  +            L 
Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTIKSELGQGTEFIIKLP 584


>gi|167741025|ref|ZP_02413799.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 14]
          Length = 927

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 543

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 544 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 664 TVTVALP 670


>gi|153007204|ref|YP_001381529.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030777|gb|ABS28545.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter sp.
           Fw109-5]
          Length = 800

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 65/247 (26%), Gaps = 36/247 (14%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL--------------------- 37
            + +   L+ +  L ++  L + + H++ +P+  +  +L                     
Sbjct: 411 TRQLQARLALADRLASVGTLAAGVAHELNTPLAYVSANLAFVSDGVERLGRLLDGAPEAG 470

Query: 38  -ELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
            EL  +      +  +      +       F R      G V+    LG    +    + 
Sbjct: 471 AELARQVADAARDAREGAERMRVIVRDLRTFSRGQDDDEGPVELASVLGSCLNMAAAELC 530

Query: 96  VDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENI 148
              RV  S +             ++ LNL + A  ++P     R      +         
Sbjct: 531 RRARVTRSLSPVPPVRGNAARLGQVFLNLLVNAAQAIPEGARERHEVRVTTRTLPDGLVA 590

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHN 206
             ++  G      E   ++ D    +        +       +       +  E      
Sbjct: 591 AEVRDTGCGI-PAEHLARVFDPFFTTKPPGVGTGLGLAICHGIVTALGGAIEVESAPGAG 649

Query: 207 VVLSALL 213
                LL
Sbjct: 650 TTFRVLL 656


>gi|115380068|ref|ZP_01467111.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|310822011|ref|YP_003954369.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362927|gb|EAU62119.1| hybrid sensor [Stigmatella aurantiaca DW4/3-1]
 gi|309395083|gb|ADO72542.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 530

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 69/237 (29%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLS-SMDLVA--LLCSRICHDIISPIGAIHNSL---------------ELLDEV 43
            +     L  +  + A  +L + + H+I +P+  + ++L               ++ +  
Sbjct: 277 QRENELRLRLNERMAAIGMLAAGVAHEINNPLAFVSSNLNFIDTELRRPPPSAVDMAELK 336

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
               +  +      +         R     T  VD    L +   +    +    R+   
Sbjct: 337 EAISDAREGAERMRIIVQSLKALSRGDSITTQPVDLHEVLENSVHLAWSRLRSKGRLVRD 396

Query: 104 WTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLAR 159
           +         S + +++ +NL + A  +L + G      +   S +  +  +  NG    
Sbjct: 397 YGELSPVLGNSVQLSQVFVNLIINAAQALRKTGGEIRLVTRMHSPHRALVEVHDNGCGI- 455

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I +    +    +   +       +       L      D       LL 
Sbjct: 456 AAEHLDRIFEPFFTTKPVGEGTGLGLSISHDIIRGLGGELSVSSTLDVGTTFRILLP 512


>gi|114707286|ref|ZP_01440183.1| sensor kinase [Fulvimarina pelagi HTCC2506]
 gi|114537167|gb|EAU40294.1| sensor kinase [Fulvimarina pelagi HTCC2506]
          Length = 841

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 69/248 (27%), Gaps = 34/248 (13%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQ 51
           M            +  + A+  L   I HD  + +  I  S++ L           + + 
Sbjct: 446 MTDQRALEEQFAKAQKMQAVGNLAGGIAHDFNNVLTVITASVDFLLMNQKPGDPSFQDLL 505

Query: 52  LIRLSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           LI+ S+  A   ++ +        +        D +  L  + + I       +R     
Sbjct: 506 LIKQSANRAASLVRQLLAYSRRQTMRPKMLNLTDVVADLDLLLKRIAGDKTKLERRHARN 565

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIF 149
               +    +  +++ NL   A  ++P                      S   + +  + 
Sbjct: 566 LWPVMADIGQFEQVITNLVGNARDAMPNGGTIKIETRNVEEGHARVFGYSEMPAADYVLV 625

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +   G      +   +I +    +        +    V  +  ++   +  E  +    
Sbjct: 626 EVSDTGTGM-PADVAERIFEPFFTTKEIGKGTGLGLSMVYGIIKQSNGFIYVESTEGEGT 684

Query: 208 VLSALLEK 215
           V    L +
Sbjct: 685 VFRIFLPR 692


>gi|15602178|ref|NP_245250.1| hypothetical protein PM0313 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12720549|gb|AAK02397.1| ArcB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 618

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 63/237 (26%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   L +++  +     L + I H++ +P+  I     +L +  + +     ++   
Sbjct: 105 EKKLSIALDNIEKTSRDKTRLMATISHELRTPLNGIIGLSRILLDEKLTETQQNYLKTIH 164

Query: 58  MSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---- 102
           +SAI                         +V+    L DI  V        K        
Sbjct: 165 VSAISLGHIFSDIIDLEKIDARRIELNAKAVELNSFLNDISNVARLLAQQKKLAFQLVTD 224

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +     +      ++IL NL   A      G       + S+ +  FS+   G      
Sbjct: 225 KNLPTWFMVDYARLSQILWNLIGNAVKFTQEGRITLNVKRVSEYQISFSVSDTGIGIPAN 284

Query: 162 EKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E            +         I       +A      L            + +L 
Sbjct: 285 ELPRVFEMYYQVQSSGHKPLGSGIGLAISQTIAQLMGGDLYATSEMGKGSCFTLMLP 341


>gi|37676889|ref|NP_937285.1| hypothetical protein VVA1229 [Vibrio vulnificus YJ016]
 gi|37201433|dbj|BAC97255.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
          Length = 881

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    + +     ++  + + H+I +P+  I    E+L +  +  +  +++     S+ 
Sbjct: 363 AKESAISANRAK--SVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEILGDIDTSSQ 420

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +      +      + +   E  I + +     +                     
Sbjct: 421 SLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATSKNIELHITMGEDIP 480

Query: 106 GEKIDLSRERAKILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            + +       ++L NL   A        +           D +    F +   G     
Sbjct: 481 AKVMADDHRIKQVLTNLVGNAIKFTKEGYISTFVNYQADEHDHQGYLTFKVTDTGIGIDQ 540

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  T                    +       L       L            S  + 
Sbjct: 541 AKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGELTATSTKGLGSCFSFTIP 599


>gi|88813407|ref|ZP_01128644.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
 gi|88789373|gb|EAR20503.1| multi-sensor hybrid histidine kinase [Nitrococcus mobilis Nb-231]
          Length = 831

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 61/236 (25%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +    +   + + H++ +P+  I   LEL+         M+ IR      
Sbjct: 441 LRKTAADLSEANRRKSEFLATLGHELRNPLAPIRMGLELMKMAADSPAKMEEIRGMMERQ 500

Query: 61  IIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           ++++  +                        +      +      I++            
Sbjct: 501 VLQMVRLIDDLLDVSRITRGKLQLRICRVAVANVVQNAVEMARPFIDEADHQLTVAVPPQ 560

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      A++  NL   +    P GG + +S +   ++ + +++ NG       + 
Sbjct: 561 PIHLDADPNRLAQVFSNLLNNSAKYTPEGGHIWLSAERQGSDVVVTIRDNGIGIPADMQT 620

Query: 165 TQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
           +                    I    V  L   +  R+                L 
Sbjct: 621 SIFEMFTQVDRPLEQGYTGLGIGLTLVKQLVEMHGGRIDARSEGSGRGSAFEVRLP 676


>gi|186681380|ref|YP_001864576.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463832|gb|ACC79633.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1177

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51
            +     L            I H+  +PI  I   LE                      +
Sbjct: 527 RQQAERLLELDKQKTEFFQNISHEFRTPITLIQGPLESAVAAGEGLSYSQSAIALRNSRR 586

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108
           L+RL +    ++              D +  +  I +    +          Q+      
Sbjct: 587 LLRLVNQLLDLQRLDAGRMQPSFHPCDLVEFVSQIVESFRPYCEKKRLHLATQLDECSPV 646

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                +  K++ NL   A    P GG + + ++  ++  I  ++  G      +      
Sbjct: 647 YLDMEKFDKVVYNLLSNAMKFTPEGGTIGVRLKSEQDRCILQVQDTGIGIVKEQIPHLFE 706

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +  +G+   + +   +    V  L   +   +  E +       S  L
Sbjct: 707 RFRQAEGSANRSYEGSGLGLALVKELVELHGGHVTVESVYGQGTTFSLWL 756


>gi|291562929|emb|CBL41745.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 468

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 57/216 (26%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------R 68
           + + HD  SP+ +I   LE + +      + D+ + ++   +       + M        
Sbjct: 249 ANVSHDFRSPLTSIKGYLEAIKDGTIPPELYDKYLGILISETERLNKLTQGMLTLNSLDS 308

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNLFM 124
             F    + D    + D     E        V      +          +  ++L NL  
Sbjct: 309 KGFLTRSNFDINRVIKDTAATFEGTCNAKDIVLDLTFAADIQMVYADLGKIQQVLYNLID 368

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID--SH 179
            A         + I       +   S+K  G         + + +    ++    D    
Sbjct: 369 NAIKFSRENSVIYIQTSLKYEKVFVSVKDTGIGIPKESIKKIWDRFYKSDLSRGKDKKGT 428

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +   +               L K
Sbjct: 429 GLGLAIVKEIIQAHGENIDVISTQGVGSEFIFTLPK 464


>gi|172037459|ref|YP_001803960.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171698913|gb|ACB51894.1| probable two-component sensor histidine kinase [Cyanothece sp. ATCC
           51142]
          Length = 364

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 20/215 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           L S + H++ +P+  +   LE L      G  D  + L++ +     +      L+    
Sbjct: 148 LISDMTHELRTPLTVMRGYLEELANGSIEGNPDLYLNLVKETRRLERLIHDMQELSKAEA 207

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----------ERAKILLNLF 123
           G +   +   +I  ++   +       +                         +IL+NL 
Sbjct: 208 GYLSITLHPINIIPLLTSLVERFSDQIMDDGPMIQLDYPQELPPVLADSDRTEQILVNLI 267

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178
             A      G     +      +    +   G   +  +    F +    +   +     
Sbjct: 268 GNAIRYTETGTITIKAWSTK-KQVWIEIIDTGIGIKPEDLPYIFERFWRADKSRSRYSGG 326

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             I       L      ++  E            L
Sbjct: 327 TGIGLAITRRLVELQGGKIEVESEIGKGSTFRFSL 361


>gi|119513099|ref|ZP_01632152.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
 gi|119462233|gb|EAW43217.1| Response Regulator Receiver Signal Transduction Histidine Kinase
           [Nodularia spumigena CCY9414]
          Length = 444

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 67/230 (29%), Gaps = 23/230 (10%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------ 62
           L +  L +   + + H++ +P+ AI    ++L          Q   +             
Sbjct: 168 LEASRLKSQFLATMSHELRTPMNAIIGFSQILLRPKFGKLTHQQTDMVERILNNGKNLLM 227

Query: 63  -RLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              + +  +    G ++    L D        + Q+     A    ++V    ++  +  
Sbjct: 228 LLNEVLDFSKLEGGRLELKPELFDLTKIINIVVAQMRSLAEAKKLSLRVDIDMQQPLVFN 287

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT----- 165
           +  ++   L      A      G       +  +N+   +++  G      +        
Sbjct: 288 DSVRVRQILINLLSNAIKFTESGCIWIEVKELPQNQLAIAVRDTGIGIASRDFKHIFEAF 347

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + VD ++        +    +  L      R++ E       +    + +
Sbjct: 348 RQVDQSITRKYPGTGLGLAIIDSLVQMMGGRIILESQLGVGSMFRIEIPR 397


>gi|148265645|ref|YP_001232351.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146399145|gb|ABQ27778.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 492

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 65/227 (28%), Gaps = 16/227 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            + +   + +  L  +  + + + H++ +P+ AI  S+  LD    ++    +       
Sbjct: 258 QRAVSQMIQNEKLATIGKIVAGVAHEVNNPLAAISTSIYNLDGKAPQELKRYIEILKKGV 317

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109
                       F R+       V S +   +        +       V           
Sbjct: 318 HRIEAIVRQLTDFSRVNTLDLRPVPSELFFKEAAGFAGMALKGTDLRFVGTDSCPPTTLD 377

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  +++LNL + A  + P+ G +              +   G+    PE   +I +
Sbjct: 378 IDKGKLHQVVLNLILNALDASPQQGTIEFLAYCHDGFYFLVVTDQGSGI-PPEDREKIFE 436

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +   I       +   ++  ++ E            + 
Sbjct: 437 IFHTTKPAGEGSGIGLAICRSIVEMHRGEIILESRQG-MTTFIVKIP 482


>gi|330501968|ref|YP_004378837.1| sensor protein PilS [Pseudomonas mendocina NK-01]
 gi|328916254|gb|AEB57085.1| sensor protein PilS [Pseudomonas mendocina NK-01]
          Length = 530

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 70/219 (31%), Gaps = 19/219 (8%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL---- 64
           + L +L  L + I H+I +P+GAI ++ +LL E   ++    +L ++    +        
Sbjct: 305 LKLASLGRLTAGIAHEIRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIE 364

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
              +  R        +D    L             D+++ +   G  +    +  ++   
Sbjct: 365 NVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPADRQIHLETQGGSLQTRMDPHQLTQV 424

Query: 122 LFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L            +        + +   +S +  +  +  +G     PE+   I +    
Sbjct: 425 LTNLVQNGLRYSAQKHRLGQVWLRLFRDESSDLPVLEILDDGPGV-PPEQEQHIFEPFYT 483

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +      +  Y    L   N+ RL  +  +         
Sbjct: 484 TENKGTGLGLYISRELCQGNQARLDYKPREGGGSCFRIT 522


>gi|301058248|ref|ZP_07199291.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300447645|gb|EFK11367.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 587

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 29/237 (12%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------------ 51
              + +  L +L  L + + H+I +P+  I    ++L +   + + M             
Sbjct: 334 QQLMQTGKLASLGKLSAGVAHEINNPLAIILTERQILLDAAEDVDNMDPEFKTQLMDSLS 393

Query: 52  ----LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTG 106
                I+         L+F R        VD    +G+I  ++  D      +    +  
Sbjct: 394 QVDTQIQRCKRITHNLLRFSRRTQSSIAPVDLNAFIGEIIDLMERDARTSGIKFISDFQE 453

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFSLKINGNLAR 159
           +   LS + +++      +   ++     +            D K         +G+   
Sbjct: 454 DLPTLSSDSSQLQQVFLNMITNAIDAHAGMPYGTIRITTRSDDEKQGINVVFADSGSGI- 512

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +I D    +        +       +       +  E         S    
Sbjct: 513 PPEIMDKIFDPFFTTKEVGKGTGLGLSICYSIVKRLGGGISVESERGKGTSFSMFFP 569


>gi|296122333|ref|YP_003630111.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
 gi|296014673|gb|ADG67912.1| ATP-binding region ATPase domain protein [Planctomyces limnophilus
           DSM 3776]
          Length = 510

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 70/241 (29%), Gaps = 28/241 (11%)

Query: 3   KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL----------------DEVG 44
           +     + S  L     L + + H+I +P+ AI  + E L                ++  
Sbjct: 262 ERSRQLVRSERLAGVGFLAAGVAHEINNPLSAISMASESLASRVAGSNGEPLLISAEDAE 321

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVD 97
           +  + +++I+  +         +           G       +  +  +   +  F    
Sbjct: 322 VARQYLEMIQSEAGRCEEITSRLLTFARGQDAPRGRQDLTKIVQDVVQMVGHMGRFSGHT 381

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGN 156
              +   +        E  +++LNL   A  S+   GGK+++ +++  +E   + K  G 
Sbjct: 382 IDCRPVESVFAEVNGAEIKQVVLNLVANALESMGASGGKLSVEIKELSDEVCLAFKDTGC 441

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                           E        +       +  ++  R+                L 
Sbjct: 442 GMSARVLENLFEPFFTERKSGRGTGLGLSISHRIVVDHGGRIEAHSDGPGCGSTFRVHLP 501

Query: 215 K 215
           K
Sbjct: 502 K 502


>gi|296100715|ref|YP_003610861.1| integral membrane sensor hybrid histidine kinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055174|gb|ADF59912.1| integral membrane sensor hybrid histidine kinase [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 758

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 68/232 (29%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   M  V  L   + HD  + +  I  SLEL D    +   +     ++     
Sbjct: 390 EEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTDPDSSDAPRIARALNAAERGAL 449

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R       +V+    L ++ +++   +     +++           +  ++
Sbjct: 450 LTQRLLAFSRKQSLTPHAVEMKPLLENLRELMRHSLPATLSLEIEAQSPAWPAWIDVGQL 509

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +   G+     E  +
Sbjct: 510 ENAIINLVMNARDAMEGQTGVIKIRTWNQRVTRSDGRRQDMVALEVIDRGSGM-TQEVKS 568

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++ +    +        +    V     ++  R+  E        +   L +
Sbjct: 569 RVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLHLPR 620


>gi|225851110|ref|YP_002731344.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1]
 gi|225645199|gb|ACO03385.1| phosphate regulon sensor protein PhoR [Persephonella marina EX-H1]
          Length = 339

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 60/216 (27%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69
             S + H++ +PI  +   +E L++      + + + ++          +          
Sbjct: 119 FVSNVSHELKTPIAVMKGIVETLEQEEDVQTIRKFLNMAKKRIDQMDSLINDLLILAKLE 178

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                           +  + +  + +     +     +          ++   +L NL 
Sbjct: 179 SKEEKLNITKADLSRIVNSIFNDLEHLSKEKNIKLINDIPEGFLIDVDQKKFDILLKNLI 238

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDS 178
             A       G VT+S +    E + ++   G           F +    +      +  
Sbjct: 239 ENAIKYNKPEGSVTVSAERKDGEILINVTDTGIGIPKESQPLIFERFYRVDKSRSRNVGG 298

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +A  +  ++  +   +     +  + 
Sbjct: 299 TGLGLSIVKHIAEAHNGKVEVKSEPNVGSTFTVRIP 334


>gi|162456997|ref|YP_001619364.1| two-component hybrid sensor histidine kinase/response regulator
           [Sorangium cellulosum 'So ce 56']
 gi|161167579|emb|CAN98884.1| two-component hybrid sensor histidine kinase/response regulator
           [Sorangium cellulosum 'So ce 56']
          Length = 545

 Score =  112 bits (279), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 68/247 (27%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDL-----VAL-----LCSRICHDIISPIGAIHNSLELLD--------- 41
           +A++    L +  L      A      L + + HD+ +P+  I  +  LL          
Sbjct: 296 LAQSASVALENARLYNEAQAATRARDDLLAIVSHDLRNPLNTIAITASLLRSDLLQRKDG 355

Query: 42  EVGIEDEVMQLIRLSSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQV 89
           +     +++  +     S    ++ +                   G       L     +
Sbjct: 356 DDDDAVQLVDRMDRGIQSMTRLIEDLLDASRIEAGRLVVSPRVERGGTLVREALDAATSL 415

Query: 90  IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
            E       +  +    E +       ++  NL   A    PRGG V++S+    +   F
Sbjct: 416 AEAKGCRVTQGPLDAGLEVLADRDRVLQVFSNLLGNALKFTPRGGVVSVSLCRVADGARF 475

Query: 150 SLKINGNLARFPEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           S+   G       +           + +     +  Y    +   +   +  E       
Sbjct: 476 SVADTGPGIPPEHQPHLFDRYWKAAQESRTGAGLGLYIARGIVEAHHGTMAVESAPGQGT 535

Query: 208 VLSALLE 214
            +   L 
Sbjct: 536 TIHFSLP 542


>gi|307822507|ref|ZP_07652738.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacter tundripaludum SV96]
 gi|307736111|gb|EFO06957.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacter tundripaludum SV96]
          Length = 642

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 76/260 (29%), Gaps = 47/260 (18%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI--------------HNSLELLDEVG 44
           +       + S  + +L  L + I H+I +PIGAI                ++E      
Sbjct: 377 LQSAQTQLVQSEKMASLGQLVAGIAHEINNPIGAIYANMPPLEEYIDDIKGTVEFAQSCM 436

Query: 45  IEDEVMQLIRLSSMSAII--------------------------RLKFMRLAFGYTGSVD 78
            E E  +L    +                                  F RL  G   +V 
Sbjct: 437 DETEAQKLNAHMAQIDYTFVTDDLAKLLNSQKQAADRIRNIVLSLRNFSRLDQGEVKTVR 496

Query: 79  SLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV 136
              GL    Q++         V+            + E  ++ +N+   A  ++P  G++
Sbjct: 497 LEEGLDSTLQMLHHHYKDRITVEKDYALNEMVECYAGELNQVFMNILANAIQAIPDKGRI 556

Query: 137 TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENK 194
            I+     ++ + S+   G      E   +I D    +    +   +       +  +++
Sbjct: 557 FITTAKMNDQAVVSIADTGTGM-PDEVRKKIFDPFFTTKEVGEGTGLGLSISYGIIEKHQ 615

Query: 195 IRLLPEIIDDHNVVLSALLE 214
             L  E   +        + 
Sbjct: 616 GMLTVESELNRGTRFIIAIP 635


>gi|300813035|ref|ZP_07093418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300496005|gb|EFK31144.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 552

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     E   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVTDTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|283781767|ref|YP_003372522.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440220|gb|ADB18662.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 252

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 67/226 (29%), Gaps = 19/226 (8%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMS 59
               S  +L A L   + H+I +P+  I  ++ELL E         E   +  I + S  
Sbjct: 15  QLRASYQELAA-LAGSLAHEIKNPLSVIRMNMELLAEDFATPQTPKERRALAKIEMVSRQ 73

Query: 60  AIIRLKFMRLAFGYT----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                  +     ++             + +  + D+         V+           +
Sbjct: 74  CTRLENLLNDFLRFSRAGRLDIRLGNLNEQIARVLDLFDAQSRENGVEVIRYFDHDLPSV 133

Query: 110 DLSRERAKILL-NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +  E  +  L NL   A  ++P GG++    + ++N     L   G          ++ 
Sbjct: 134 SIDPEALQAALVNLVKNALEAMPAGGQLVARTRITRNGVALDLIDTGCGMDEKTAV-RMF 192

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +  R+  +   +     +    
Sbjct: 193 DAFYSTKSGGSGLGLPTARKIIEAHGGRIGVQSELNRGTQFTLEFP 238


>gi|238752096|ref|ZP_04613579.1| hypothetical protein yrohd0001_220 [Yersinia rohdei ATCC 43380]
 gi|238709673|gb|EEQ01908.1| hypothetical protein yrohd0001_220 [Yersinia rohdei ATCC 43380]
          Length = 895

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + D       ++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLDTALNHHPIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + + ++ +     ++ +NL   AH        + I      +     +  NG      +
Sbjct: 769 ADMVLINCDGSLLERVFINLLENAHKYAGFHALLGIRASVQGDWLQVEVWDNGPGVIAGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +        L 
Sbjct: 829 EQLIFDKFSRGNKESVIPGVGLGLAICRAIIDVHGGRIWVERNPEGGASFYFTLP 883


>gi|229029070|ref|ZP_04185169.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271]
 gi|228732350|gb|EEL83233.1| hypothetical protein bcere0028_11720 [Bacillus cereus AH1271]
          Length = 466

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    ++K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGNGTTVSIKLK 458


>gi|254442407|ref|ZP_05055883.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198256715|gb|EDY81023.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 724

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 65/245 (26%), Gaps = 34/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL----DEVGIEDEV 49
            K+    L    L A           + + H++ +P+  I    E+L    ++   +  +
Sbjct: 332 QKSRHEELMKAKLAAESANSAKDRFLAMVSHELRTPLNPIVGYAEILAAKIEDPMAQRFL 391

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQ 101
             +   +   A +    +  +   +G +D  +    +         Q+    +    ++Q
Sbjct: 392 KIIKESAKGMASLVSDILDYSMIESGRIDIEVETFRMSDLLSLVSRQIESVALERGNKIQ 451

Query: 102 VSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKIN 154
           V   G    +  ++    +++ NL   A      G  +                  +   
Sbjct: 452 VDLDGGDPWVEADKRKLSQVVSNLVANACKFTQNGKILISSSASQTSKEAYSVRIEVSDT 511

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      E    I +         ++      +       L       +          +
Sbjct: 512 GIGIPESEL-ETIFEPFEQLGSVHKAETRGVGLGLAICRQLVGALGGTISVSSQLGSGTI 570

Query: 209 LSALL 213
            +  L
Sbjct: 571 FTVDL 575


>gi|168701749|ref|ZP_02734026.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM 2246]
          Length = 1178

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 77/231 (33%), Gaps = 18/231 (7%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
            + +     L S  + A+  L   + HD  + +  I     +L       E  +  E+++ 
Sbjct: 807  LKQLEAQLLQSQKMEAVGRLAGGVAHDFNNLLTVILGFGGMLGDRLTGRERTLVGEIVKA 866

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               ++      L F R        +   + + + E+++   I  D  +      E   + 
Sbjct: 867  GERAAGLTRQLLAFSRQEVIQPRPLSLNVVVAEAERLLRRLIGEDIELTTVADPELAQVV 926

Query: 113  RER---AKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKFT 165
             +     ++L+NL + A  ++P GG++T+   + +       + S+   G      E   
Sbjct: 927  ADPGQAEQVLMNLVVNARDAMPTGGRLTVETSNVERDGARYVLLSVTDTGCGM-SDEVKA 985

Query: 166  QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +    +        +    V  +  +    +  + +  H         
Sbjct: 986  RLFEPFFTTKGAGRGTGLGLAVVHGVVEQAGGHIEVDSVIGHGTTFQVYFP 1036


>gi|166030752|ref|ZP_02233581.1| hypothetical protein DORFOR_00426 [Dorea formicigenerans ATCC
           27755]
 gi|166029544|gb|EDR48301.1| hypothetical protein DORFOR_00426 [Dorea formicigenerans ATCC
           27755]
          Length = 713

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 69/242 (28%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53
           + K+    + +    +   S + HDI +PI  I    E++ +   +   +          
Sbjct: 323 LEKSSQEVMRANQAKSDFLSHMTHDIRTPINGIMGMAEVIKKNCSDQNKVDECLDKIQKA 382

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEKI 109
                      L   +L  G          L       Q I +  A +K + V W    I
Sbjct: 383 SGHLLDLLNDVLDMSKLESGKIQLEQIPFELEKEMKELQTIMETQAEEKGLTVFWDMTGI 442

Query: 110 DLSR------ERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLA 158
             +          +ILLNL   A     +GG++      I   D      F +  NG   
Sbjct: 443 CHNELIGSPLHMRRILLNLLSNAVKYNKKGGEIHLTVNEIMQNDKTAMFEFKVADNGIGM 502

Query: 159 RFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  ++    V+      +      +    V  +  E    +  E  +      +  
Sbjct: 503 SESFIEDKLFQPFVQGTGEARTKYQGTGLGMSIVQRIVREMTGSIDVESKEGEGTTFTVT 562

Query: 213 LE 214
           L 
Sbjct: 563 LP 564


>gi|153932079|ref|YP_001382738.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934988|ref|YP_001386289.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
 gi|152928123|gb|ABS33623.1| sensory box histidine kinase [Clostridium botulinum A str. ATCC
           19397]
 gi|152930902|gb|ABS36401.1| sensory box histidine kinase [Clostridium botulinum A str. Hall]
          Length = 615

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            KNI     S     L+    S I H++ +P+  I  +++LL       +   +D+ ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKL 405

Query: 53  IRLSSMSAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           I+ +    +  +  +                      +       V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      +      GG + ++V+D        +K  G     
Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNIFVNVKDCGENVYVHVKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +   +  +            L 
Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVHIKSELGQGTEFIIKLP 584


>gi|78184328|ref|YP_376763.1| adaptive-response sensory kinase [Synechococcus sp. CC9902]
 gi|123757119|sp|Q3AYV8|SASA_SYNS9 RecName: Full=Adaptive-response sensory-kinase sasA; AltName:
           Full=Synechococcus adaptive sensor protein A
 gi|78168622|gb|ABB25719.1| histidine kinase [Synechococcus sp. CC9902]
          Length = 383

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 67/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + +     +  +     L   + H++ +P+ A   +L+         +   +    +L  
Sbjct: 132 LRQENETLIDRIHAQERLLRMVAHELRTPLTAAALALQSQRLGQIDMDRFQDVVTRRLEE 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           + ++S  +                     +    I ++ + ++  +  ++        + 
Sbjct: 192 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIRTDIPSDLPKV 251

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A      GG + +S+   +      S+  +G      E+    
Sbjct: 252 FADQRRMRQVLLNLLENALKYTGNGGHIALSMLHRTNQWVEVSVCDSGPGIPNEEQQRIF 311

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++             +       +   +  R+      +     +  + 
Sbjct: 312 LDRVRLPQTSDRTTGFGVGLSVCRRIVEVHGGRIWVVSEPEEGACFTFTVP 362


>gi|332534201|ref|ZP_08410048.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036367|gb|EGI72837.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 672

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 29/242 (11%)

Query: 1   MAKNI-CFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + + +      +  L    ++L ++I H++ +P+  I   L  L +   E +  + I+++
Sbjct: 284 LREELKNKQAQAERLLEDRSMLFAKISHELRTPLNGITGMLTTLIDEHNEQKRTEKIKVA 343

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------------- 101
             SA I L  +     ++      + L   + ++         +                
Sbjct: 344 LRSADILLSIINEVLDFSKINHGELKLEPTDVLLNTTFTDLISLYTPLFKNSNVELEVKN 403

Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNL 157
            +S +      +   ++I  NL   A      G      ++   ++K      +   G  
Sbjct: 404 EISDSCWAYCDNTRLSQITSNLLSNALKFTEHGCVKLHTSVINNNNKLTLNIKVADTGRG 463

Query: 158 ARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    +     +      +     +    V  L       +      +     S  
Sbjct: 464 MTSQFL-ESLFSPFTQEVDAKNSKGGTGLGLAIVKELVEYMGGTIKVSSKVNQGTTFSLS 522

Query: 213 LE 214
           + 
Sbjct: 523 IP 524


>gi|298492280|ref|YP_003722457.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc
           azollae' 0708]
 gi|298234198|gb|ADI65334.1| PAS/PAC sensor signal transduction histidine kinase ['Nostoc
           azollae' 0708]
          Length = 533

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 25/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K    +    +L A L + +CH   +P+  I  S  LL     + +  +++       
Sbjct: 295 LEKTKLLS----ELRAHLVAIVCHQFRTPLNVISFSNSLLKRHIDKWDEEKILPFIKHIQ 350

Query: 61  -----------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                       I       +  ++   + +  +   + +I   + ++    +++     
Sbjct: 351 IGVEQINQILDDILFLAKAESVQFSFQPEVIDLVEFCQDLISKMLIINSEYHINFDSRGN 410

Query: 110 DLSRERAK-----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  K     I+ NL   A    P G  V + V   + E IF +K  G      E  
Sbjct: 411 CEKVWIDKRLVEPIVNNLLENAIKYSPIGSVVELRVDCHEGEVIFHVKDQGIAI-PEEDQ 469

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +          +  H +    V  L + +  ++            + +L 
Sbjct: 470 NRLFEPFYRGSNIDKVPGHGLGLSIVKTLVNLHGGQMRVVSKVGVGTTFTVVLP 523


>gi|284046157|ref|YP_003396497.1| integral membrane sensor signal transduction histidine kinase
           [Conexibacter woesei DSM 14684]
 gi|283950378|gb|ADB53122.1| integral membrane sensor signal transduction histidine kinase
           [Conexibacter woesei DSM 14684]
          Length = 504

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 70/237 (29%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           +A      L  ++          +   H++ +P+  I   LE+L             V +
Sbjct: 253 LADAFDRMLDRLENAFERQRGFVADASHELRTPLTVIRGQLEVLARQTAVTPADVRHVDE 312

Query: 52  LIRLSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           ++R   +     +  +               S+D    + ++   +         +    
Sbjct: 313 VVRTEVLRMERLVDDLLLLARADEGELVRPHSLDLAPFVTELFDALTLTADRAFELGELP 372

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEK 163
            G  +      A++L NL   A      GG V ++V+     +  F+++ +G     PE+
Sbjct: 373 QGRLLADEDRVAQVLRNLARNAVEHTGPGGLVRLTVRVLDRTQVEFAIEDDGPGI-PPEQ 431

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ D                 +       +   +   +      +    ++  L 
Sbjct: 432 RDRVFDRFHRTDSARARRTGGAGLGLAIARAIVEAHGGTIAAGSSPEGGARVAFTLP 488


>gi|317154681|ref|YP_004122729.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944932|gb|ADU63983.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 493

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 78/228 (34%), Gaps = 18/228 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDEVGIEDEVMQLIRLSS 57
           M   +     +  L ++  L + + H+I +P+  I      L+   G++D+V + I +  
Sbjct: 258 MEHRLQ---QAEKLASIGELSTYMAHEIRNPLFTISGFANSLMRSGGLDDKVREKIGIIL 314

Query: 58  MSAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +    + ++    +T   +           +     +  +  +   V   V +     
Sbjct: 315 DESRRLDEILKSLLNFTRPTEAQVAEVDINELVTATMSVMSLPCENQGVTATVDLDENVA 374

Query: 108 KIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           ++  + +   + L+NL   +  ++  GG++ ++   + N  + +++  G+     E   +
Sbjct: 375 RVRANPDLIKQCLINLVKNSLEAMDGGGRLLVTTTMTHNYAVLAVEDTGHGIPL-EIRDK 433

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I      +      +       +  E    +           ++  L 
Sbjct: 434 IFSPFFSTRGKGAGLGLAQTRKIIDEIGGEVDLVSRVGAGTKITLFLP 481


>gi|256005028|ref|ZP_05429999.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
 gi|255990996|gb|EEU01107.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 2360]
          Length = 424

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 59/225 (26%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             +     S + H++ +PI +I   +E L    + +       +++I + +      +  
Sbjct: 198 EQIRTEFVSNVTHELKTPITSIRGFIETLKNGAMNNPVVAERFLEIIDIEAERLHELIND 257

Query: 67  M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                       +  +  + Q I     +     V             
Sbjct: 258 ILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVLMKANINRM 317

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++++NL         + G V++       + + S+K  G          +I +      
Sbjct: 318 KQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIP-RIFERFYRVD 376

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  + +     +    +          + 
Sbjct: 377 KGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 421


>gi|255012859|ref|ZP_05284985.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           sp. 2_1_7]
          Length = 1041

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN     + +    L  + + H+I +P+ AI     +L E  + +E  +   +   +  
Sbjct: 670 AKNKAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSNILAETDVLEEKQEYAEIIENNNA 727

Query: 62  IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106
           + L+ +                    VD    L D+E+ +   +  +    V        
Sbjct: 728 LLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVVNENVRLVFERKEKDC 787

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++++NL   A     +G         +K    F +   G      E+   
Sbjct: 788 YVSIAKNRLMQVIINLLTNAIKFTDQGSISYGYSCLNKKMLRFYVSDTGRGISV-EQQEA 846

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D  V  +S      +      ++       +  E              
Sbjct: 847 IFDRFVKLDSFAQGTGLGLSICRMIVDHLGGEMGVESEIGKGSTFWFTFP 896


>gi|239905717|ref|YP_002952456.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239795581|dbj|BAH74570.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 556

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
           + +     +    L +L  L S I H + +P+  I  S ++L E   + E          
Sbjct: 318 LERRQAQLVQEKKLSSLGVLTSGIAHQLNNPLNNISTSCQILIEEHGQCEPAFAGRMLTN 377

Query: 50  -MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTG 106
             Q +  +       L+F R              +    +++         +        
Sbjct: 378 IQQEVLRARDIVKGLLEFSRAKDFSLKPTPLAPVVAGAFRLVSSQTPSGITLSRDVPEDM 437

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                +    ++L+NL + A  ++             + +     ++  G      +   
Sbjct: 438 VLNLDAARMQEVLINLLLNAVQAIDAPSGAITVSARVEADAVALVVEDTGPGIADEDLG- 496

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D    +        +    V  +  +++  ++ E            L 
Sbjct: 497 RVFDPFYTTKEVGKGTGLGLSIVFGIIEKHQGSIVAEKTGGRGARFVIRLP 547


>gi|281418070|ref|ZP_06249090.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|281409472|gb|EFB39730.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum JW20]
 gi|316939890|gb|ADU73924.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum DSM 1313]
          Length = 589

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 59/225 (26%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             +     S + H++ +PI +I   +E L    + +       +++I + +      +  
Sbjct: 363 EQIRTEFVSNVTHELKTPITSIRGFIETLKNGAMNNPVVAERFLEIIDIEAERLHELIND 422

Query: 67  M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                       +  +  + Q I     +     V             
Sbjct: 423 ILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVLMKANINRM 482

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++++NL         + G V++       + + S+K  G          +I +      
Sbjct: 483 KQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIP-RIFERFYRVD 541

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  + +     +    +          + 
Sbjct: 542 KGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586


>gi|167905032|ref|ZP_02492237.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 922

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 419 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 478

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 479 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 538

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 539 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 598

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 599 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 658

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 659 TVTVALP 665


>gi|183220935|ref|YP_001838931.1| putative signal transduction histidine kinase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189911031|ref|YP_001962586.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775707|gb|ABZ94008.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779357|gb|ABZ97655.1| Putative signal transduction histidine kinase; putative membrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 1206

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 59/231 (25%), Gaps = 28/231 (12%)

Query: 10  SSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
              ++ ++      + + H+I +P+ AI    E+L      ++  + +     SA   L+
Sbjct: 585 EKAEMASITKSTFLANMSHEIRTPMNAIIGFTEVLLSDPNPNQNKKHLETIRNSAKSLLR 644

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKI 109
            +             + L  ++  +   +       +                       
Sbjct: 645 LLNDVLNSAKLDRGALELESVDFSLISLVDQVSSTFIMEAKRKGLEFLTHYSNELEDYYR 704

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S    +IL NL   A     +G              +F ++  G      ++  +I +
Sbjct: 705 GDSLRIRQILTNLIGNAIKFTKQGKIELFITPHKGQ-VLFHIQDTGIGI-AEDRMEKIFE 762

Query: 170 GN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +        +       L      ++  E            L 
Sbjct: 763 PFTQADVSMSRKFGGTGLGTTISKQLVELMGGKIWLESKLGVGTNFYFSLP 813


>gi|150009899|ref|YP_001304642.1| two-component hybrid sensor kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938323|gb|ABR45020.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Parabacteroides distasonis
           ATCC 8503]
          Length = 1041

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN     + +    L  + + H+I +P+ AI     +L E  + +E  +   +   +  
Sbjct: 670 AKNKAEESNRLKSAFL--ANMSHEIRTPLNAIVGFSNILAETDVLEEKQEYAEIIENNNA 727

Query: 62  IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106
           + L+ +                    VD    L D+E+ +   +  +    V        
Sbjct: 728 LLLQLINDILDLSKIEAGTLEFVYSDVDVNTLLSDLERSMSKRVVNENVRLVFERKEKDC 787

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++++NL   A     +G         +K    F +   G      E+   
Sbjct: 788 YVSIAKNRLMQVIINLLTNAIKFTDQGSISYGYSCLNKKMLRFYVSDTGRGISV-EQQEA 846

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D  V  +S      +      ++       +  E              
Sbjct: 847 IFDRFVKLDSFAQGTGLGLSICRMIVDHLGGEMGVESEIGKGSTFWFTFP 896


>gi|197116896|ref|YP_002137323.1| GAF domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197086256|gb|ACH37527.1| sensor histidine kinase, GAF domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 689

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 72/241 (29%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           MA+ I  +   M+ V +L   I HD  + +  +   + L    + E     + +  +  +
Sbjct: 444 MAEQIRQS-QKMEAVGVLAGGIAHDFNNLLTGMIGYVSLALMTIKEEDPATKYLDQVVSA 502

Query: 57  SMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +          L F R    +   VD    + ++ +++   +     ++V  +   + + 
Sbjct: 503 ADRAADLTQRLLAFSRKQINHPEPVDLNQIVNNVRKLLSRLVTAKIELKVEPSEGMLPVV 562

Query: 113 RERAKILLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154
            + ++I   +      A  ++P                    +       +  + S+   
Sbjct: 563 ADSSQIDQMVMNLVTNARDAMPTGGTLTITTEAMELTEEWVESHGYGSIGSYAVLSVTDT 622

Query: 155 GNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           G       +   +        +     +    V  +  +++  L           L+  L
Sbjct: 623 GTGMDEATRAHVLEPFFTTKEVGKGSGLGLAIVYGIVKQHEGHLEIYSKPGAGTTLNVYL 682

Query: 214 E 214
            
Sbjct: 683 P 683


>gi|187928757|ref|YP_001899244.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
 gi|187930010|ref|YP_001900497.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
 gi|187725647|gb|ACD26812.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
 gi|187726900|gb|ACD28065.1| integral membrane sensor signal transduction histidine kinase
           [Ralstonia pickettii 12J]
          Length = 535

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 65/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS---- 56
           + + +       +L     S   H+  +P+G I    + L       +   L        
Sbjct: 296 LQETLDKERRMAELQRNFISMASHEFRTPLGVIDGQAQRLIRTRDALQPEALEERCGKIR 355

Query: 57  --SMSAIIRLKFMRLAFGY-------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                    +  +  +  +                   L  + ++         ++  ++
Sbjct: 356 AAVQRMTHLMDHLLDSSQWLDSTTPAAMRRTDFPLAALLHEVCEMHLEGTPSARIEVCIE 415

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   +   NL   A    P G  V++ ++   +    +++  G      
Sbjct: 416 TDEPNTFFGDARLLFQAFSNLVGNAVKYSPPGAPVSVRMRSDADGVSVTVEDRGLGIPER 475

Query: 162 EK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F + V G   +      +  Y V L+   ++  +     +      +  L +
Sbjct: 476 DIERLFERYVRGGNVAGTVGAGVGLYLVKLVVELHRGTITVTSEEGKGSRFNVFLPR 532


>gi|115380076|ref|ZP_01467117.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362916|gb|EAU62110.1| two-component sensor histidine kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 410

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 66/234 (28%), Gaps = 27/234 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           + +     LS         + + HD+ +P+GA+      +        E+++ +   L  
Sbjct: 163 LKRQREVQLS-------FIAGVAHDLRNPLGALKLGASTMRPGQPLPAEEKIRERFTLIV 215

Query: 58  MSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQV--SW 104
                  + +                     D    + +   + +      + V      
Sbjct: 216 RQVERLERMVEDLLDTARIEAGRLELRLERYDLRGLVHEAVALHQGLSPAHELVSQLPEK 275

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      +++L NL   A    P GG V++ +Q +  E   +++ +G      E+ 
Sbjct: 276 AVSVQCDPTRISQVLNNLLSNAIKYSPEGGLVSVELQTTGGEAQVTVRDSGVGIPSTERE 335

Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        ++    I    +       +   +  R+  E            L 
Sbjct: 336 SIFEPFRRSTSNRDTIPGVGLGLSVARRIIEAHGGRIAVESTPGVGSTFHFHLP 389


>gi|86158622|ref|YP_465407.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775133|gb|ABC81970.1| PAS/PAC sensor hybrid histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 848

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIEDEV----- 49
            + +   +  +  + +L  + + + H++ +P+  ++     +LE L  V    E      
Sbjct: 458 RREMQARVQVAERMASLGTMAAGVAHEVNNPLTYVYGNVAFALERLRSVDARREAPLVEA 517

Query: 50  -------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                  +               F R        VD +  +    ++     A   +V V
Sbjct: 518 LQALREALAGADRVRHIVRDLKAFSRAEDDRLEPVDVVRVVEGCLKMTGTLTAGRAQVIV 577

Query: 103 SWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKING 155
            +              +++LNL + A  ++P G      ++ S           ++   G
Sbjct: 578 RFGPVPRVLASEARIGQVMLNLIVNAAHAIPEGDPGANRIEVSTALAADGRVEVAVADTG 637

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P+   +I D    +    +   +       +       +  E           LL
Sbjct: 638 TGI-APDVLPRIFDPFFTTKGVGEGTGLGLSICHGIVKALGGEIHVETEVGRGSRFRVLL 696


>gi|89070251|ref|ZP_01157575.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89044171|gb|EAR50329.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 455

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
            + +     + +L  +   S I H++ +P+ +I  ++ L+      +       ++ L  
Sbjct: 211 KERLLEETQAANLAKSEFISVINHELRTPLASIKGAVSLINGNAVGEVPERFRRMLSLAE 270

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------V 102
            +    I  +  +     ++             +          +              +
Sbjct: 271 RNCNHLIQLVNDLLDVEKFSAGKMEFHFKNIDLKSFLTAEIATNQTFANNFGVTIEAAPM 330

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +   ++L NL   A         + + ++ +  E + S++ +G      E
Sbjct: 331 PEGVHVWGDEKRLGQVLSNLLSNAAKFSKPDSTIVVGLKATGTEAVISVQDSGRGI-PRE 389

Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           K +++ +   +             +    V  +   ++ R+               LE+
Sbjct: 390 KQSRLFEPFYQVDSSNERERGGTGLGLSIVKSIVDAHQGRIRLVSEPGRGTTFYIKLER 448


>gi|134299991|ref|YP_001113487.1| multi-sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
 gi|134052691|gb|ABO50662.1| PAS/PAC sensor hybrid histidine kinase [Desulfotomaculum reducens
           MI-1]
          Length = 1271

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + +     +    +   + + H+I +P+  I    E+L +  +  +  + +++      
Sbjct: 527 EQALLVAEKASKAKSEFLANMSHEIRTPMNGILGFAEVLIQQELSPQQQESVKIIQQCGE 586

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WT 105
             +                + +          +    ++ +       V+ ++ +     
Sbjct: 587 QLMDLINDILDLSKIESGKLVMEETSFSLRKLIHEAVNVIESKFLEQNVEMKIDIEQNLH 646

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLAR 159
            +         ++L NL   A     +        + +IS  D + +  F ++  G    
Sbjct: 647 DQLKGDPTRIRQVLYNLISNAAKFTHQGYVKISVAEESISGADHQIKLRFCIEDTGIGIP 706

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           DG+         +       L       +  E   +   + S  + 
Sbjct: 707 KEKLKLIFDAFTQADGSTTRKYGGTGLGLTICKSLTQLMGGEINVESQVNKGSIFSFYIP 766


>gi|219667788|ref|YP_002458223.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219538048|gb|ACL19787.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 356

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 60/214 (28%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S + H+I SP+ +I     LL +  +  E  +           RL  +        ++D+
Sbjct: 138 SNVSHEIQSPLTSISGFAGLLKKEDLSAEQRRRYAEIIEGESKRLSSLSENLLKLTTLDN 197

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTG--------------EKIDLSRERAKILLNLFMV 125
                + +    D       + +                           +++  NL   
Sbjct: 198 SKLPLNRQDFRLDKQLEHVALLLEPQWSAKNLTLEAELPLCILCGDEDLLSQVWTNLLHN 257

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHD 180
           A    P GG+++I ++   +    ++   G      +    F +    +     +   + 
Sbjct: 258 AIKFTPEGGQISIGLKQEGDAAQVTIGDTGIGIGPEDRIHIFERFYKADKARARSAGGNG 317

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V  +   +   +  E            L 
Sbjct: 318 LGLSLVKKIVDLHGGSIRVESTIGEGTTFEVFLP 351


>gi|326693644|ref|ZP_08230649.1| histidine protein kinase; sensor protein [Leuconostoc argentinum
           KCTC 3773]
          Length = 451

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 21/227 (9%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIR 63
           L    + +   +   H++ +P+ AI   +E L      +    +  + ++   +      
Sbjct: 224 LQVERMQSDFLANASHELKTPLTAITGFIETLQGPAGADQATREMFLDIVAQEAKRLSSL 283

Query: 64  LKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +  +                    D +         + +  AV  R  V        L  
Sbjct: 284 VNDILSLSRVQQKREAVQTELVIHDMVAEQWQHVMPLAETKAVQLRNDVPDDFIIRGLKT 343

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
           +   IL NL + A     +GG + ++          ++K  G      +    F +   G
Sbjct: 344 DVEMILQNLIVNAVKYNVQGGDIHVTAYKDHQHWQLNVKDTGIGIPTNQQSRIFERFYRG 403

Query: 171 NVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            +    V  + +++   +  +        +S  L 
Sbjct: 404 DESRQRKIASGTGLGLAIVNEIVNKHNGEIKVQSQVAVGTTISVTLP 450


>gi|237712910|ref|ZP_04543391.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262409649|ref|ZP_06086189.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|294647129|ref|ZP_06724733.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294807884|ref|ZP_06766665.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|229447029|gb|EEO52820.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262352502|gb|EEZ01602.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|292637546|gb|EFF55960.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294444882|gb|EFG13568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 583

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + K       S  L +   + + H+I +P+ AI    +LL   ++   ++E +Q+I  ++
Sbjct: 203 LEKARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 262

Query: 58  MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +  +  +                 +  +V        + + + +       V    T
Sbjct: 263 ELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYET 322

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL N    A     +G       +   +     ++  G      +K  
Sbjct: 323 CTVRLDKNRLAQILTNFVTNAIKYTSKGTIEMGYEKIDGD-IRLYVRDTGIGI-PEDKKD 380

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++       +       +       +    +  +  E   D   +  A+L 
Sbjct: 381 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 431


>gi|229055190|ref|ZP_04195617.1| hypothetical protein bcere0026_3240 [Bacillus cereus AH603]
 gi|228721182|gb|EEL72712.1| hypothetical protein bcere0026_3240 [Bacillus cereus AH603]
          Length = 402

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 68/226 (30%), Gaps = 20/226 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +     +     +  + + I H+I +P+ A+    ++  E   ED +     +     
Sbjct: 183 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNPEDTM--SYEIMLQEI 235

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------EQVIEDFIAVDKRVQVSWT-GEKI 109
                F+           +     +I           +       V   +QV        
Sbjct: 236 ERINGFVSELMLLGKPKPTNYEWCNIGEILLYVVQLMESYAAQYKVKFHLQVDGNLPVIN 295

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIV 168
              ++  ++LLN+      S+P GG + I   +   +    S++  G      EK  +I 
Sbjct: 296 GDDKQLKQVLLNIIKNGIESMPGGGNIQIMAYEKAGDNLCISVEDQGIGI-ENEKIEKIG 354

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +   +       +  E++  +  E        +   L 
Sbjct: 355 KAFYTTKENGTGLGLMITYKIIEEHQGSIAIESSMGIGTKVEIYLP 400


>gi|171687465|ref|XP_001908673.1| hypothetical protein [Podospora anserina S mat+]
 gi|170943694|emb|CAP69346.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1417

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            N      +  L +   + + H+I +PI  +    ELL +V + +E   +      SA   
Sbjct: 821  NEAAAKEASRLKSQFLANMSHEIRTPITGVIGMSELLLDVELTEEQRDITENIYRSANAL 880

Query: 64   LKFMRLAFGYTGSV------------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            L  +     ++                     D    L    +  +     D    +   
Sbjct: 881  LTVINDILDFSKVESGRLDIEEVQFSLSVIVRDVSKMLSFAAERKDLAFHSDISEDIETD 940

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFP 161
               +       +I+ NL   +      G       ++          F ++  G      
Sbjct: 941  MVVMGDPGRVRQIITNLVTNSIKFTNHGHVKFSVFKEKDTPEITEIKFVIEDTGIGI-EE 999

Query: 162  EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++                   +       L    K R++ E         +  + 
Sbjct: 1000 EVRKRLFQPFSQGDASTARKFGGTGLGLTICKHLLDLMKGRMVLESTLGTGTTATFWIP 1058


>gi|220919555|ref|YP_002494859.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957409|gb|ACL67793.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 461

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 59/225 (26%), Gaps = 23/225 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL 69
            L +   + + H++ +P+ ++    E++ E     +  E  + + +        L+ +  
Sbjct: 217 RLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGIIMEKGENLLQLITS 276

Query: 70  AFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +                V  +         I     +      +          + 
Sbjct: 277 ILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCDTTPLPRIHADRDKL 336

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV-----D 169
            + L+NL   A    P GG +T+S +          +  +G                  D
Sbjct: 337 RQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVVDSGIGIPEEHLGKVFDVFYQVD 396

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G+         +    V      +   +          V + LL 
Sbjct: 397 GSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSVFTVLLP 441


>gi|197124838|ref|YP_002136789.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196174687|gb|ACG75660.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 461

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 59/225 (26%), Gaps = 23/225 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL 69
            L +   + + H++ +P+ ++    E++ E     +  E  + + +        L+ +  
Sbjct: 217 RLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGIIMEKGENLLQLITS 276

Query: 70  AFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +                V  +         I     +      +          + 
Sbjct: 277 ILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCDTTPLPRIHADRDKL 336

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV-----D 169
            + L+NL   A    P GG +T+S +          +  +G                  D
Sbjct: 337 RQCLVNLCSNAVKFTPPGGSITVSAEVLPAERLAIHVVDSGIGIPEEHLGKVFDVFYQVD 396

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G+         +    V      +   +          V + LL 
Sbjct: 397 GSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSVFTVLLP 441


>gi|73541976|ref|YP_296496.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ralstonia eutropha JMP134]
 gi|72119389|gb|AAZ61652.1| ATP-binding region, ATPase-like:Histidine kinase A,
           N-terminal:Osmosensitive K+ channel His kinase
           sensor:UspA [Ralstonia eutropha JMP134]
          Length = 951

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 25/239 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRL 55
           A+    ++ S  L + L + + HD+ +P+ ++    E L                 +   
Sbjct: 698 AQRALLSMESERLRSSLLAAVSHDLRTPLTSLIGMAETLQRGDPPLAPRVADTVSAMRDQ 757

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTG 106
           +   + + +  + +A      V         E+++                    +    
Sbjct: 758 ARRMSTMVVNLLDMARLQGRDVRMQKEWQSFEELVGAALGALRDALVGHRVAVADLHKMP 817

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++L NL   A    P G ++ I  +   +E    ++ +G         + 
Sbjct: 818 LVECDAVLMDRVLCNLLENAAKYTPAGTEIRIRAEVVDDEVRLVVEDDGPGVPPGSERQI 877

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD-------HNVVLSALLEK 215
           F +   G  ES      +       +   +  R+  E + D               L +
Sbjct: 878 FEKFTRGERESVTTGVGLGLAVCDAIVQAHGGRIWVEPVRDAATAGAGIGARFIVALPR 936


>gi|21228731|ref|NP_634653.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907241|gb|AAM32325.1| hypothetical sensory transduction histidine kinase [Methanosarcina
           mazei Go1]
          Length = 716

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 66/243 (27%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQ 51
            K I   L    +        +   + + H++ +P+ +I    +LL +     + ++ ++
Sbjct: 467 RKAIEKLLQEKQVAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLCDQIYGKLNEKQLK 526

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKR 99
                S S    L  +      +      + L   E             +       + +
Sbjct: 527 YTNNISKSGKHLLNLINDILDLSKVEAGKMELDYREFELADRLNSVKSLLSPIAARKNIK 586

Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           ++++   +   +  +     +I+ NL   A         V I  +        ++   G 
Sbjct: 587 IEINVNKDLTTICADEARFVQIMYNLVDNAIKFSFENNPVRIEARRKGEFLETTVTDIGI 646

Query: 157 LARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             +  ++                      +    V  + + +   +    I       + 
Sbjct: 647 GIKPEDQHKLFQPFSQVAAFSSKKFQGTGLGLSLVKQIVNLHGGYVWFRSIPGEGSTFAF 706

Query: 212 LLE 214
            + 
Sbjct: 707 AIP 709


>gi|330836391|ref|YP_004411032.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           coccoides DSM 17374]
 gi|329748294|gb|AEC01650.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           coccoides DSM 17374]
          Length = 627

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 65/220 (29%), Gaps = 22/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------ 65
             + + H++ +P+ AI+   E L    I  E + L          +++            
Sbjct: 382 FVANVSHELKTPLTAINGFSETLLGGMISSEDIGLFSKIINRNARQMQGIIDDLLLLASL 441

Query: 66  ---FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILL 120
                 L        + +    +      +  +V     V     +  +       + L+
Sbjct: 442 EDDHAALTMKRCTLEELVKETCEDTSYRANSRSVILTTTVHDENGRGVMVNPSLLVQALV 501

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           NL + A      G +V I  +  ++   FS+   G+          F +    +      
Sbjct: 502 NLVINAITYSEPGSEVRIKAEGDQDTVTFSVMDQGSGIPEKHLTRIFERFYRVDKARSRN 561

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +   +  ++  + +++     +  + +
Sbjct: 562 QGGTGLGLSIVKHVVSMHGGQVSVQSVENLGSTFTITIPR 601


>gi|330508806|ref|YP_004385234.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328929614|gb|AEB69416.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 1026

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 67/242 (27%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++     S+    +   + + H+I +P+ A+    ELL +   E           M  
Sbjct: 631 LQRSKEMAESATRAKSEFLANMSHEIRTPMNAVIGLTELLMDEKDEKLTSAQRECVEMIR 690

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------------------VIEDFIAVDKRVQ 101
           I     + +             + ++E                    V +  I    +++
Sbjct: 691 ISGDTLLSIINNILDLTKIEANMTELEHRPIDVKGCIESSMDLVSGSVGDKRIKFSYKIE 750

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNL 157
            +     +       +IL+NL   A     +G         ++ D   E  F++K  G  
Sbjct: 751 ENVPQFIMGDPTRLCQILINLLNNAVKFTEQGEIAVSVSNTNLDDGGYEIHFAVKDTGIG 810

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +K +++                   +       L      R+  E       V   
Sbjct: 811 I-PEDKMSRLFRSFSQVDASTARKYGGTGLGLAISKKLTEMMNGRMWVESAVGVGSVFHF 869

Query: 212 LL 213
            +
Sbjct: 870 TI 871


>gi|255009841|ref|ZP_05281967.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313147627|ref|ZP_07809820.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313136394|gb|EFR53754.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 479

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 67/237 (28%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQ 51
           + KNI     L S        S I H++ +PI AI  SL+LL++          E     
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAIMMSLQLLEDKRVGVLNGEQEQLSKN 301

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +   S     I  + + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 302 IKDNSQRLLDITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFNIQIEVE 361

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +  +      ++  G    
Sbjct: 362 YPEEKIPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGARREEEYIELYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  +            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSEPGKGSCFVIRLK 478


>gi|254784782|ref|YP_003072210.1| Two component sensor signal transduction histidine kinase
           [Teredinibacter turnerae T7901]
 gi|237685661|gb|ACR12925.1| Two component sensor signal transduction Histidine kinase
           [Teredinibacter turnerae T7901]
          Length = 994

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M       L S  L ++  L + + H+I +P+  I    + +     + ++++ +     
Sbjct: 746 MQLLEQELLHSERLASVGRLAAGVAHEIGNPVTGIACIAQNMKYETEDADLLESVDQILS 805

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------------KRVQVSW 104
                 + +     ++ S            +     A +                  V  
Sbjct: 806 QTDRVSRIVHSLVNFSHSGQQQQEDNAQLPIDLRDCAQEAIDLIKLQQKGDITFENTVDS 865

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +  ++   ++L+NL   A  + P GG + ++    KN    S+   G     PE  
Sbjct: 866 GLTAMGDTQRMIQVLVNLLSNARDASPDGGHIVVNGDLRKNWVHLSVTDEGTGI-SPELR 924

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALLEK 215
            QI +    +    +   +    V  +  E+   L      D            L K
Sbjct: 925 DQIFEPFFTTKEPGEGTGLGLAMVYSIVEEHGGLLEIISPVDEVLQKGTKFVIKLPK 981


>gi|210610306|ref|ZP_03288335.1| hypothetical protein CLONEX_00525 [Clostridium nexile DSM 1787]
 gi|210152536|gb|EEA83542.1| hypothetical protein CLONEX_00525 [Clostridium nexile DSM 1787]
          Length = 516

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49
           +       +        L S I HD+ +PI AI   +E + +   +              
Sbjct: 270 LKDTAEEKVEYDRKSKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTIYN 329

Query: 50  ----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI---EQVIEDFIAVDKRVQV 102
               M L+                    T  V+            ++    I       V
Sbjct: 330 KANEMDLLINELTLYSKIDSNRIPYNFSTVLVNDYFDDCAEDLAMELEARGIEFGYFNYV 389

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFP 161
               + I    +  +++ N+   +   + +        V+D  +     L+ NG      
Sbjct: 390 ESDVKIIADVEQLKRVINNIVSNSEKYMDKEHGKINLRVKDVGDFVQIELEDNGKGIGAK 449

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    F +    +           I    V  +  E+  ++     +    V+  ++ K
Sbjct: 450 ELPHIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSKEGTGTVMYFVIRK 508


>gi|206889635|ref|YP_002249063.1| cell cycle histidine kinase CckA [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206741573|gb|ACI20630.1| cell cycle histidine kinase CckA [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 261

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 66/242 (27%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            K     + +  +   ALL + I HD  + +  I     L++     +  +         
Sbjct: 6   KKTEEQLIQAQKIEAAALLANGIAHDFNNLLTPILGFSGLVESKLGANHPLYPYVEHIHS 65

Query: 54  --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +       L F R        +     L D  + I   +  D ++        I +
Sbjct: 66  SAEKAKELIKRLLSFSRKDTTEFKPLYLDDLLKDFLEFIHPILRKDIKIITDLNVGTIQI 125

Query: 112 SRERA---KILLNLFMVAHASLPRGGKVT---------------ISVQDSKNENIFSLKI 153
             ++    ++++NL   A  ++P GG +                          + S+  
Sbjct: 126 FADKNLIEQVIMNLVTNAKDAMPEGGILKISTSLIEIDETFVNTHGYGKPGRYVLLSISD 185

Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G+     E   +I +    +  D    +    V  +  ++   +               
Sbjct: 186 TGHGM-DEEVKQRIFEPFFTTKGDKGTGLGLSVVYNIVQQHNGYINVYSELQKGTTFEIY 244

Query: 213 LE 214
             
Sbjct: 245 FP 246


>gi|193212975|ref|YP_001998928.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327]
 gi|193086452|gb|ACF11728.1| multi-sensor hybrid histidine kinase [Chlorobaculum parvum NCIB 8327]
          Length = 1397

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 64/242 (26%), Gaps = 29/242 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLS 56
            + +        ++ +  L   I HD  + +  I    E    L+ E  +  +    I  +
Sbjct: 1011 LLEENLIKTQRLETIGTLAGGIAHDFNNILTPILGYAEMGSILMQENNLPHDFYTQIMQA 1070

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----- 111
            +  A   +  + +      +  ++I +  I +     +       +S             
Sbjct: 1071 AERAKNLVSQILMFSRAEKAEPAIIKVQQIVEEAMQLLRPSIPSTISIETRFSKCGNVLV 1130

Query: 112  -SRERAKILLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSLKIN 154
               +  ++++NL   A  ++                              +    ++  N
Sbjct: 1131 DPTQLHQVIMNLCTNAFQAMEDSGGEMSIDLREIIADNEFHKKHPNLKDSHYAQLTVTDN 1190

Query: 155  GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G+         +I +    +        +    V  +    K  +  E +  +       
Sbjct: 1191 GHGMEASTI-ERIFEPFYSTRGFNKGTGLGLSVVHGIVTSFKGDITVESLPGNGSTFRIY 1249

Query: 213  LE 214
            L 
Sbjct: 1250 LP 1251


>gi|119897209|ref|YP_932422.1| two-component sensor kinase [Azoarcus sp. BH72]
 gi|119669622|emb|CAL93535.1| two-component sensor kinase [Azoarcus sp. BH72]
          Length = 663

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 72/237 (30%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNS----LELLD----EVGIEDEV 49
           +A      L +   LV +  + S + H++  P+ AI +     L  L+    +     ++
Sbjct: 425 LALQQEERLQATSRLVTMGEMASTLAHELNQPLAAIASYNTGCLNRLEADEFDRDELRDI 484

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSW 104
            + I   +  A   ++ +             + L ++ +     V  D       +    
Sbjct: 485 HEKIGRQARRAGDIIRRVHDFVRRAEPRREALDLNEVIREALGLVEPDARKRRIHLVADL 544

Query: 105 TGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNL 157
             +   +  +     +I++NL      ++    +   S     + +       +  +G  
Sbjct: 545 AADLPVVHADAVMIEQIIVNLVRNGMDAMQDTPEPNRSLRIGTRSAGAVVTVRVTDHGTG 604

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E    +      +  +   +       +A  +  RL  E   D   + +  L 
Sbjct: 605 I-DAETARHLFQPFFTTKQEGMGMGLNICRSIAELHHGRLGFEPAPDGGTIFTLTLP 660


>gi|113867802|ref|YP_726291.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113526578|emb|CAJ92923.1| signal transduction histidine kinase [Ralstonia eutropha H16]
          Length = 350

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 58/221 (26%), Gaps = 23/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L + + HD+ +P+ ++   LE+L            +  +Q+           ++ +    
Sbjct: 129 LLANVSHDLRTPLASMQGYLEMLLLKAEEMTPEDRNRYLQVATRHCERLGKLVQDLFDLT 188

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WTGEKIDLSRERAKIL 119
                             +   +     +  +                         ++L
Sbjct: 189 KLEAREVQPRLESFPLSELAQDVVQKFALAANKRGLALLATSGPGCPPVSADIGMIERVL 248

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
            NL   A    P GG++++ VQ +      +++  G      +    F +        + 
Sbjct: 249 ENLIENAMRYTPAGGEISVDVQAAGERVELTVRDTGQGIDTSQVQGVFDRYYRVERTESD 308

Query: 177 DSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +     +       +   +   +            +  L +
Sbjct: 309 NGSNVGLGLAISRRIVQLHGGEIRVRSALGKGTAFTIDLAR 349


>gi|76800727|ref|YP_325735.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76556592|emb|CAI48163.1| signal-transducing histidine kinase; probable PAS/PAC domain
           protein [Natronomonas pharaonis DSM 2160]
          Length = 628

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 57/230 (24%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55
           A+      S+  L       + HD+  P+  + + L+LL+    +D   +          
Sbjct: 393 ARRRELRESNERL-QQFAYVVSHDLQEPLRMVSSYLDLLESEYSDDLDAEAREYIDFAVD 451

Query: 56  ----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD---IEQVIEDFIAVDKRVQVSWTGEK 108
                S      L + R+                      + +     + R++       
Sbjct: 452 GAERMSRMIDALLSYSRVETRGEEPAPVDAAAVFEEAHRDLKQRIEETNARIEADDLPTV 511

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLAR---FPEKF 164
           +    +  ++  NL   A         V    V+    E +F++   G         + F
Sbjct: 512 LADRSQLGQLFRNLLSNAIEYAGDEPPVVDVAVERQNGEYVFAVADEGVGIHERDREDIF 571

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                G          I       +   +   +  +            L 
Sbjct: 572 EVFQRGRNADRGSGTGIGLAICRRIVDRHGGDIWVDSTVGDGTTFYFTLP 621


>gi|119717119|ref|YP_924084.1| GAF sensor signal transduction histidine kinase [Nocardioides sp.
           JS614]
 gi|119537780|gb|ABL82397.1| GAF sensor signal transduction histidine kinase [Nocardioides sp.
           JS614]
          Length = 539

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 59/212 (27%), Gaps = 18/212 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + H++ +P+ +I   +ELL +        +E    ++   ++       + +  A  +  
Sbjct: 311 VAHELRTPLTSILGYVELLVDDVDGRGEDLERTARRIDEAATRLRDRITELLDTADRHRQ 370

Query: 76  SVDSLIGL---GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHA 128
              +   L              A    + ++   +  + +         ++ NL   A  
Sbjct: 371 LDLASTDLAALTRGLTDSFAAQARAADITLTTQAQHPEWAVVDEAGIEMVVRNLVSNAIK 430

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI--DSHDIQF 183
               GG + ++     +    ++  +G      E                       I  
Sbjct: 431 FTHPGGHIALTTTGQPDHVRITVTDDGVGMSPDEVAQACDMFWRAESSHRQALPGTGIGL 490

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                L   +   L  +   D    ++  L +
Sbjct: 491 ALARDLIAAHHGSLDIDSTPDVGTTITLTLPR 522


>gi|330718003|ref|ZP_08312603.1| PAS/PAC sensor signal transduction histidine kinase [Leuconostoc
           fallax KCTC 3537]
          Length = 621

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 66/240 (27%), Gaps = 32/240 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
                + S     +  S + H++ +P+ ++ + ++ L     D+  +    + +++  + 
Sbjct: 369 TEQQRIDSER--RMFVSNVSHELRTPLTSVRSYVDALADGAIDDPEMSHNFLGVVQDETQ 426

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------- 105
             I  +  +            +         + +F+     + +                
Sbjct: 427 RMIRMINDLLELSRLDQGTMEVKLEIVNLNSLFNFVLDRFDMILENDAKKDNGNKQYKIQ 486

Query: 106 -------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                          +  ++L N+   A    P GG +T  +  +K   I S+   G   
Sbjct: 487 REFTKQDVWVEVDPDKFTQVLDNIMNNAVKYSPDGGTITARLIKTKTRAILSISDEGLGI 546

Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +                       +       +  + K R+  + +++        L
Sbjct: 547 PRKDLDNIFNRFFRVDKSRSRAQGGTGLGLAISKEVVEKFKGRIWVDSVENRGSTFYISL 606


>gi|325286067|ref|YP_004261857.1| histidine kinase [Cellulophaga lytica DSM 7489]
 gi|324321521|gb|ADY28986.1| histidine kinase [Cellulophaga lytica DSM 7489]
          Length = 363

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 69/229 (30%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           + K        + ++  + + I H++ +P+  I    ELL +   +D          +  
Sbjct: 135 LIKRQVEQSDRLRILGEITAGIAHELNTPLANILGFAELLKDRTKQDSQATKDLDKIINS 194

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDL 111
              S       + F          V+ +    +  + +       +  +  S +  KI L
Sbjct: 195 AIYSREVVKKLMFFACEMPQQKSLVNIIPICKEAIELLKPILKTKNITLNFSSSNSKIAL 254

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
             +R ++   LF     A       G + + ++D        +K  G          +I 
Sbjct: 255 KIDRIQLTQVLFNLVINAIYFSEENGVIVLDIKDKSARVEIHIKDQGTGIDTN-LGDKIF 313

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +    +   +    V  +   +K  +          + +  + K
Sbjct: 314 EPFFTTKPVGEGSGLGLSVVHGIVKSHKGNISFSANMPKGTIFTVAIPK 362


>gi|291559354|emb|CBL38154.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
          Length = 450

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +  +           + + H++ +P+  I +  E L E  + +E  +   +  +  
Sbjct: 219 MFERLEESFEKEQ---QFTADVSHELRTPVTVIISQCEYLIEDPVLEEEEKEEIMIILRQ 275

Query: 61  IIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             R+  +                       +     + +  +   +   +   V      
Sbjct: 276 ARRMSKLINEMLMIARGEMSESYDMEEVDLILLTEVIVEELREQAEKKKIQISVFSDRDV 335

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
           + +       ++++NL   A +     G + I  ++  +  I  +K +G      +    
Sbjct: 336 KMMGNHTLLLRMMMNLVQNAISYGKEHGHIDILWKEQGDMIIGEVKDDGIGIDQEDIPKI 395

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +    +   + +     +    V  +   +  ++  E  +           K
Sbjct: 396 WDRFYRVDKSRSRENGGTGLGLSMVHFIVAVHGGQIHVESKNGEGTSFIFQFPK 449


>gi|260221574|emb|CBA30274.1| hypothetical protein Csp_C22730 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 785

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 62/254 (24%), Gaps = 42/254 (16%)

Query: 2   AKNICFNLSSMDLVA---------------LLCSRICHDIISPIGAIHNSLELLDEVGIE 46
            +     L    L A                  + + H++ +P+ AI   L+LL+   + 
Sbjct: 235 REGSRAALEQAKLAAEKARHTAEQASLAKSQFLANMSHELRTPMNAILGMLQLLEGTELT 294

Query: 47  DEVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVI 90
           D+       ++ +A                      +      T  +   + +     V 
Sbjct: 295 DKQRSYTHNTASAARSLLSLLNDILDFSKVEAGKMTLDPRPFRTDQLLRDLSVILSANVG 354

Query: 91  EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNE 146
              I V   V        +       ++L+NL   A     RG  V      +   +K  
Sbjct: 355 AKTIEVLFDVGTDVPNALVGDDMRLQQVLINLGGNAVKFTERGEVVIRLRLKATNGAKAF 414

Query: 147 NIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPE 200
             F++   G      E    I  G                +       L       L  +
Sbjct: 415 VEFAVSDTGIGI-ASENQAHIFSGFSQAEASTTRRFGGTGLGLAICQRLVGLMGGTLEVD 473

Query: 201 IIDDHNVVLSALLE 214
            +          + 
Sbjct: 474 SVPGEGSNFHFTVP 487


>gi|239908505|ref|YP_002955247.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239798372|dbj|BAH77361.1| sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 683

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 62/247 (25%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIR 54
           + +     + S  + +L  L   + H+I +P+G I    +LL E           +Q I 
Sbjct: 420 LKQFQEQLIQSQKMESLGKLAGGVAHEINTPLGVILGYSQLLQEDVPGGSQIQADLQTIE 479

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
             +      +  +        S    +   +        V          +         
Sbjct: 480 KQAKVCRKIVADLLGFSRQAESAKIEMCFNNSLMEAITLVRHALSLEKVVIATDLDERMP 539

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPEK 163
            +  +     ++ +NL   A  +L   G        +   + +       +G     P+ 
Sbjct: 540 IIYGDPEKLKQVWINLLSNASDALEGRGGTLLVRSRLFAHEQKVTAWFADDGPGI-SPDN 598

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH--------------NV 207
             ++ D    +        +       +  ++   +  E                     
Sbjct: 599 LGRVFDPFFTTKPVGQGTGLGLSVSFGIIKDHGGSIRVETPAPEGFFDALDDPGHDRPGT 658

Query: 208 VLSALLE 214
           V    L 
Sbjct: 659 VFVIDLP 665


>gi|209548975|ref|YP_002280892.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534731|gb|ACI54666.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 510

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 64/233 (27%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           +A+    N    +L     +   H+  +P+  I  + + L       E     + +  IR
Sbjct: 268 LAQERNIN----ELQRQFVAMASHEFRTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIR 323

Query: 55  LSSMSAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------W 104
            S    +  ++  +      TG +D       +  +I         +  +          
Sbjct: 324 ASVNRIVDLMESILSAGRLDTGKIDISYDACALRSLIRSCCERQSTIAKTHRFVLDIDGL 383

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                   R  A++  NL   A    P   ++ ++  +       S+  +G      +  
Sbjct: 384 PEFIDADPRTVAQVFTNLLSNAVKYAPGTSEIRVTAWEETGNVKVSISDDGVGIDPEDVP 443

Query: 164 --FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +       + I    I    V  +   +   +            +  L 
Sbjct: 444 RLFQRYFRAGTSTGIAGTGIGLNLVKQIVELHHGSIEVRSARGCGSTFTVTLP 496


>gi|167921296|ref|ZP_02508387.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei BCC215]
          Length = 927

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 543

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 544 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 664 TVTVALP 670


>gi|187922526|ref|YP_001894168.1| histidine kinase [Burkholderia phytofirmans PsJN]
 gi|187713720|gb|ACD14944.1| histidine kinase [Burkholderia phytofirmans PsJN]
          Length = 666

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 34/248 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE--DEVMQL 52
           +       + +  L AL  + + I H++  P+ A+    +    LL+        E ++ 
Sbjct: 404 LRAAHDELIQASKLAALGQMAAGITHELNQPLAALRGFSDNTRVLLERGDQASARENLEA 463

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------- 99
           I   +         ++L  G     ++   +    + +   +    +             
Sbjct: 464 IAALTERMGKITNQLKLFVGRARPRNARAPIVRALRNVVALLQKRLQGVEVDITLLDADS 523

Query: 100 --------VQVSWTGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIF 149
                                    ++L+NL   A  +       +++I ++ +     F
Sbjct: 524 GTRTPLSLADDHPELVAHCDDLRLEQVLINLLGNALDATADLHPPRISIEIEVADANLSF 583

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +  NG      +   ++ +    +        +       +A +    L+     D   
Sbjct: 584 VVSDNGPGI-ADDVLPRLFEPFFTTKEMGQGLGLGLAISSSIARDCGGSLVARNAPDGGA 642

Query: 208 VLSALLEK 215
           +    L +
Sbjct: 643 LFVLTLRR 650


>gi|308069542|ref|YP_003871147.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305858821|gb|ADM70609.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 480

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           ++I   +    + +   + + H+I +P+  +    E L +         +E++Q+I   S
Sbjct: 232 RDITEEVKLEKMRSDFVANVSHEIRTPLSMMQGYSEALLDGMAGSPEESEELVQVIHDES 291

Query: 58  MSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     +K +                   +  L +         + ++ + + +  +   
Sbjct: 292 LRMGRLVKDLLDLARMEAGHTDMHRQEVDVNELIERVHRKFTVRSKEQGLTLDYHEQGQR 351

Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160
                       ++L NL   A    P G KVTI+               +K  G     
Sbjct: 352 LLLPEADEDRLEQVLTNLLDNAFRHTPGGKKVTIAADRILGERHELIRIRIKDEGVGIAS 411

Query: 161 PE---KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +            +    V  +   +   +    +       + LL 
Sbjct: 412 EDLPYIFDRFYKADKARVRGEDKGTGLGLAIVKNIVEAHGGSVSAASVLGEGTEFTILLP 471


>gi|296160389|ref|ZP_06843206.1| histidine kinase [Burkholderia sp. Ch1-1]
 gi|295889370|gb|EFG69171.1| histidine kinase [Burkholderia sp. Ch1-1]
          Length = 666

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 70/248 (28%), Gaps = 34/248 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGI--EDEVMQL 52
           +       + +  L AL  + + I H++  P+ A+    +    LL+        E ++ 
Sbjct: 404 LRAAHDELIQASKLAALGQMAAGITHELNQPLAALRGFSDNTRVLLERGDQVSARENLEA 463

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------------- 97
           I   +         ++L  G      +   +    + +   +                  
Sbjct: 464 IAALTERMGKITNQLKLFVGRARPRSARAPIVRALRNVVALLQKRLQGVEIEFALLDAQS 523

Query: 98  ---KRVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIF 149
                + ++    ++    +     ++L+NL   A  +        IS++         F
Sbjct: 524 GSRMPLSLADDYPELIAHCDDLRLEQVLINLLGNALDATADIDSPRISIEIEVADANLSF 583

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +  NG      +   ++ +    +        +       +A +    L+         
Sbjct: 584 VVSDNGPGI-ADDVLPRLFEPFFTTKEMGQGLGLGLAISSSIARDCGGSLVARNAPGGGA 642

Query: 208 VLSALLEK 215
           +    L +
Sbjct: 643 LFVLTLRR 650


>gi|284051623|ref|ZP_06381833.1| response regulator receiver sensor signal transduction histidine
           kinase [Arthrospira platensis str. Paraca]
 gi|291570874|dbj|BAI93146.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 368

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 69/232 (29%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS 57
           N+   L +      L S   HD+ +P+ +I  S +LL       +   + +  Q I+ S 
Sbjct: 134 NLFQELEAEK--TRLLSIASHDLKNPLTSIQMSTDLLAKYDSKLDEQKKLKHFQRIQSSI 191

Query: 58  MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWT 105
            S                         V+ +  +  +   +   +    ++++       
Sbjct: 192 NSMNQLLEDVLTLSKSSSGKLTFAPKLVNVVKFIQLLIDQLMVQVNDQHKLELRTSGDLD 251

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
              +   +    IL NL   A    P GG +   V   +N+ IF +K  G          
Sbjct: 252 DPIMLDDKLLGHILANLLSNAIKYSPDGGVINFDVIRQENQIIFRIKDAGIGFPPEYIQK 311

Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F     G+    I    +    V      +   +  +         + +L 
Sbjct: 312 LFQAFERGSNVGNIKGTGLGLSIVKQAVDLHGGEITVDSELGQGTTFTVILP 363


>gi|302382462|ref|YP_003818285.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302193090|gb|ADL00662.1| integral membrane sensor hybrid histidine kinase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 580

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 63/235 (26%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +      S+    +   + + H+I +P+ A+ ++  LL    ++ E  + + +   +  
Sbjct: 194 ERRKAEVASAAK--SDFLAVVSHEIRTPMNAVISAANLLRRTRLDREQREHVSMLLDAGD 251

Query: 62  IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWT 105
           + +  +                    +D    +G + ++ E   + +       +  +  
Sbjct: 252 VLVGLLNDVLDFSKIEAGKMQLEAQDIDLRDKIGSLIRLWEPKASANGVRLKVLIDDAAP 311

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKF 164
                      ++L NL   A      G               I S+   G         
Sbjct: 312 ARIRTDPLRLQQMLFNLLSNAVKFTEDGTISIAVDWRAEDGRLIVSVADTGCGIPADRLA 371

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    D           +       LA     RL  E ++    V +  L 
Sbjct: 372 HIFDSFEQVDAGTTRKYGGTGLGLAISRRLAEIMGGRLTAESVEGEGSVFTLSLP 426


>gi|237793656|ref|YP_002861208.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|229262135|gb|ACQ53168.1| sensory box histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 615

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            KNI     S     L+    S I H++ +P+  I  +++LL       +   +D+ ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKL 405

Query: 53  IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103
           I+ +    +  +  +         Y         +          V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      +      GG + + ++D        +K  G     
Sbjct: 466 TDVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGHIFVKIKDCGENVYIHVKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +K  +  +            L 
Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLP 584


>gi|240146930|ref|ZP_04745531.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
 gi|257200913|gb|EEU99197.1| sensory transduction histidine kinase [Roseburia intestinalis
           L1-82]
          Length = 478

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM------ 67
             S + HD  SP+ +I   +E + +      ++D+ + +I   +       K +      
Sbjct: 252 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLLELNKF 311

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLN 121
                     S D    +    Q  E            +    T        +  ++L N
Sbjct: 312 GSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYN 371

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177
           L   A         +TI   +   +   S+K  G         + + +    ++    D 
Sbjct: 372 LIDNALKFSHANSSITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDK 431

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +   +     +         L 
Sbjct: 432 KGTGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLP 469


>gi|225571364|ref|ZP_03780360.1| hypothetical protein CLOHYLEM_07462 [Clostridium hylemonae DSM
           15053]
 gi|225159840|gb|EEG72459.1| hypothetical protein CLOHYLEM_07462 [Clostridium hylemonae DSM
           15053]
          Length = 471

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 64/219 (29%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + HD  SP+ +I   +E + +      ++++ +++I   +       + +     +
Sbjct: 249 FVANVSHDFRSPLTSIKGYVEAMTDGTIPAELQEKYLKIILFETERLTDLTQDLLTLNEF 308

Query: 74  --------TGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLN 121
                       D    + ++    E      K     +  +         R+  ++L N
Sbjct: 309 DTQNLLLNKEPFDIHEIIKNVAASFEGTCTQKKVSIELIFATKHLFVNADKRKIQQVLYN 368

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177
           L   A         VTI   +  ++   S+K  G           + +    ++    D 
Sbjct: 369 LLDNAIKFSDSESAVTIETTERGDKVFTSVKDYGIGIPRNALNKIWERFYKTDLSRGKDK 428

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V      +   +     +      S  L K
Sbjct: 429 KGTGLGLAIVKEAIQAHGENVNVVSTEGVGTEFSFSLPK 467


>gi|86157755|ref|YP_464540.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774266|gb|ABC81103.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 379

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 64/219 (29%), Gaps = 10/219 (4%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSA 60
               +  +     L   I HD+ +P+G I  SL +L     +     + +  I      A
Sbjct: 161 QQARVERLSTFGQLVGSIGHDLRNPLGVIETSLYILRGRVGDDERARKHVDRIGEQLGVA 220

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
              +  +             + +G +       +     V V+  G +     +      
Sbjct: 221 NGIITNLLDMIRNRPLAREPVDVGQVVAAAAAAVKHAPGVSVAVEGFEGLPPVDGDPGQL 280

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ +NL   A  +    G VT+  +        +++  G       +  ++ +  + + 
Sbjct: 281 RQVFVNLLENAAFAAAPQGAVTVRARRDDGALEVAVEDTGPGVDPATRR-RLFEPLITTK 339

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +A  +   +            +  L 
Sbjct: 340 DKGIGLGLALVKRIAERHGGSVEYSDRPGGGARFTVRLP 378


>gi|75763065|ref|ZP_00742850.1| Two-component sensor kinase ycbM [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74489443|gb|EAO52874.1| Two-component sensor kinase ycbM [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 340

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 98  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQEYLKILYM 157

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    +       + +   
Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 217

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 218 STCPIIADHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDL 277

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E       +    + K
Sbjct: 278 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIPK 334


>gi|186682169|ref|YP_001865365.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186464621|gb|ACC80422.1| GAF sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 595

 Score =  112 bits (279), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 58/224 (25%), Gaps = 22/224 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
            L     + + H++ SP+  I    +LL     +       +  I  ++      ++ + 
Sbjct: 219 RLKDEFLAVLSHELRSPLNPILGWAKLLQTRKLDEAKTAYALATIERNAKLQSQLMEDLL 278

Query: 69  LAFGYTGS--------VDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRER---A 116
                           VD    +      V     A    ++  +      +  +     
Sbjct: 279 DVSRILQRKLSLKISSVDLSAVIEVALDTVRLAAQAKSIELKTEFEPNIGQVLGDPSRLQ 338

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           +++ NL   A      GG+V I ++    +    +   G                     
Sbjct: 339 QVVWNLLSNAVKFTEDGGQVEIRLERVGTQAQIQVSDTGKGINPEFLPHVFDYFRQADNT 398

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              T     +       +   +   +  E   DD     + LL 
Sbjct: 399 TTRTFGGLGLGLAIARQIIELHGGAIQAESEGDDKGATFTVLLP 442


>gi|332083592|gb|EGI88812.1| HAMP domain protein [Shigella boydii 5216-82]
          Length = 736

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 73/232 (31%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q  + ++     
Sbjct: 368 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNTDSPDAPRIQRAQQAAERGAL 427

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 428 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLTLEIEAQSPAWPAWIDVSQL 487

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+        +
Sbjct: 488 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 546

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 547 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 598


>gi|282897495|ref|ZP_06305496.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
 gi|281197590|gb|EFA72485.1| Multi-sensor Signal Transduction Histidine Kinase [Raphidiopsis
           brookii D9]
          Length = 643

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 64/221 (28%), Gaps = 25/221 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           + I H++++P+  +      L       +     + ++    S    L+ +      +  
Sbjct: 418 ATISHELLTPLTYVIGMSSTLLRWPLGELTPRQREYLQTIHDSGERLLEMINDILDLSQI 477

Query: 77  VDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKIL 119
                 L   E             ++E        +++                   +I+
Sbjct: 478 QAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQII 537

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGNVES 174
            NL   A    P+GG VT+      N  IF ++  G            +  Q VD +   
Sbjct: 538 WNLLTNAIKFTPQGGSVTLRFWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHR 597

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +   I       L   ++ R+  E       V +  + +
Sbjct: 598 PYEGTGIGLALTKQLVELHRGRIEVESTVGVGSVFTVWIPR 638


>gi|239908793|ref|YP_002955535.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798660|dbj|BAH77649.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 788

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 61/248 (24%), Gaps = 37/248 (14%)

Query: 4   NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                L S  + A        +  + + H+I +P+  +   L+LLD     DE  + +  
Sbjct: 388 QAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTTAPNDEQKEYLLG 447

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKR 99
           +  S     + +      +      + + ++E  I++                    +  
Sbjct: 448 AVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKELFALEARRKGLILEFG 507

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--------ISVQDSKNENIFSL 151
                    I       +IL NL   A     +G             S + S    + ++
Sbjct: 508 CVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEKGKIRIDASLLPLLPSSKSSAIRVLITV 567

Query: 152 KINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G                   G+         +    V  L       +  +      
Sbjct: 568 HDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVSRLVKLLGGEIAIDSTPGEG 627

Query: 207 VVLSALLE 214
                 L 
Sbjct: 628 TAFYISLP 635


>gi|154490016|ref|ZP_02030277.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
 gi|154089458|gb|EDN88502.1| hypothetical protein PARMER_00245 [Parabacteroides merdae ATCC
           43184]
          Length = 720

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 19/233 (8%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +     +     +  L +   + + H+I +P+ AI     +L E   ++E  + +++ +
Sbjct: 486 TRQSELEIQKVREADKLKSAFLANMSHEIRTPLNAIIGFSNILAETDDKEEKEEFVKIIN 545

Query: 58  MSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
            ++ + L+ +     ++                     +  QV    +     +   +  
Sbjct: 546 KNSDLLLRLITDILDFSKIESGVLDYSLSDTSLKDIFHEQFQVHAMKMPEKVSLICDFDA 605

Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +   ++L NL   A      G          +   +  +   G       
Sbjct: 606 LPDIFVHTDPKRVTQVLSNLISNAVKFTEVGSIRFSYRIV-EKYVLVEVIDTGIGISPQH 664

Query: 163 KFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          ++      +       +       +  +            L 
Sbjct: 665 QQAIFDRFVKVNSFKQGTGLGLTICKTIIEALNGTIGVDSRPGEGARFWFTLP 717


>gi|149922685|ref|ZP_01911112.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149816482|gb|EDM75981.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 373

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 62/231 (26%), Gaps = 17/231 (7%)

Query: 2   AKNICFNL-SSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L  S  L +  ++ S   H++ +P+ A+    +LL       +  +L      
Sbjct: 127 REQLRTKLAQSERLASIGMMASVFAHEVGNPLNAMFLQAQLLRRRVDRPDRGELGPKVDA 186

Query: 59  S---AIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWT-- 105
                      +     Y       + + DI          +          ++      
Sbjct: 187 LLGEIQRLNTLLDEFRSYHRPTKLQLSMTDIAEVLAKVEHTLTLQAKDRGLLIESEIEGE 246

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  + +  ++ LNL   A  ++   G+V      +  E    + +       PE  
Sbjct: 247 LPRLFASANKLEQVFLNLCKNALEAMHERGEVLRLRAQATEEGGVRVDVIDEGVGVPEDL 306

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +      +      +    V  +   +   +     D      +  L +
Sbjct: 307 PDLFAPFATTKSSGMGLGLPLVRDIVRAHGGDIAYAGNDSGGTTFTVTLPR 357


>gi|89054222|ref|YP_509673.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
 gi|88863771|gb|ABD54648.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
          Length = 621

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 66/230 (28%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54
           + K     + +  L AL  + + + H+   P+ A+ +  E     LD   +++    + R
Sbjct: 375 LRKTQAELVQAGKLAALGQMSAALSHEFNQPLAAVKSYAENAGTFLDRGRMDEARGNIQR 434

Query: 55  ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTG 106
                   +  +     F R     TG V     + D  +++   +              
Sbjct: 435 ISGLADRMAAISKHLRNFARRPGDKTGPVPLRPVIADALELMAPRLRDADVRYDPPRVEV 494

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFT 165
                     ++++NL   A  ++ +    TI +  +  +    +++  G          
Sbjct: 495 WARGGRVRLQQVVVNLLGNALDAMAQVDPPTIEITLTGGDAPQIAVRDIGPGLSDEALAH 554

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +  +   RL  E       +    LE
Sbjct: 555 AFDPFFTTKEPGQGLGLGLSISYNIIGDFGGRLSAENHAGGGAIFRVTLE 604


>gi|83648936|ref|YP_437371.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83636979|gb|ABC32946.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 890

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 58/241 (24%), Gaps = 30/241 (12%)

Query: 2   AKNICFNLS-----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           AK    N       S    +   + + H+I +P+ AI    E L E  +  E        
Sbjct: 362 AKEQALNAQRAAEVSEAAKSRFLANMSHEIRTPMTAILGYSESLRESNLSREERNQFIDI 421

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-------------QVIEDFIAVDKRVQVS 103
            + +   L  +         +++     +                +          + ++
Sbjct: 422 IVRSGRHLLTIINDILDLSKIEAEKIEIEHMQISLPNLIEDLRSHIGMRAHEKGLTLDIT 481

Query: 104 ----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLA 158
                            +IL NL   A     +G        +       F++   G   
Sbjct: 482 PKLPLPAHFESDPTRLKQILFNLGANATKFTHKGSIHFGVSYEKDTNLLRFTVTDTGIGL 541

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E   +I +                 +  Y    LAH     L  +         S  
Sbjct: 542 GPGELK-KIFEPFVQADSSTTRQYGGTGLGLYISRQLAHMLGGELTVDSSQGEGSRFSVT 600

Query: 213 L 213
           +
Sbjct: 601 I 601


>gi|75908983|ref|YP_323279.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75702708|gb|ABA22384.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1557

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 54/217 (24%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
            + + H++ +P+  I    +LL     ++E ++    +          +            
Sbjct: 1190 AVLSHELRTPLNPIMGWAKLLRTRTYKEETIKQGLETIERNAKLQTQLIDDLLDVSRILR 1249

Query: 71   ---FGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKILLNLF 123
                     VD    +    + +             +      + +       +++ NL 
Sbjct: 1250 GKLNLNVCLVDLRNTVQAGLETVRLAAEAKSIAIHTILSDEPVQVMGDGDRLQQVIWNLV 1309

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDS 178
              A    P  G+V + ++    +    +   G                            
Sbjct: 1310 SNAVKFTPSEGRVEVRLEQVGRDAQIQVIDTGKGITPEFLPYVFEYFRQADAKTTRVFGG 1369

Query: 179  HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              +    V  L   +   ++ +   +D     +  L 
Sbjct: 1370 LGLGLAIVHHLVELHGGTVVAQSAGEDQGATFTVKLP 1406


>gi|163848362|ref|YP_001636406.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526284|ref|YP_002570755.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669651|gb|ABY36017.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450163|gb|ACM54429.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 957

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 74/241 (30%), Gaps = 32/241 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------------DEVGIEDEVM 50
                +  M       S + H++ +P+ +   +L+LL             D   +E +++
Sbjct: 466 TREREVEQMK--NEFVSMVSHELRTPLASTQGALQLLLGDSERGKSGLIRDMSSVERDLL 523

Query: 51  QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           Q    ++   +  +             ++L        +      D          V   
Sbjct: 524 QRALTNTNRLLRLVNDVLDIAKIERGQLQLQRHPVAPEEICRNAIDDLASFARQQQVTIS 583

Query: 100 VQVSWTGEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           + V      +D+ R+R  ++L+NL   A    P G +V +SV   +    FS++  G   
Sbjct: 584 LDVPPNLPLVDVDRDRIVQVLVNLLSNAIKFSPAGQQVVVSVAHEQGMVRFSVRDWGPGI 643

Query: 159 RFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    F +    +   +       +       L   +  R+  +         S  +
Sbjct: 644 SRADQLKLFQKFQQLDQSKSNVRGGSGLGLAISRQLVELHGGRIWVDSDVGFGSTFSFTV 703

Query: 214 E 214
            
Sbjct: 704 P 704


>gi|117925672|ref|YP_866289.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609428|gb|ABK44883.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1177

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 58/237 (24%), Gaps = 24/237 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +      ++    +   + + H+I +P+  +    E+L E  +  E  + I     + 
Sbjct: 778  LQQAKEDAEAANRSKSEFLAAMSHEIRTPMNVVIGMGEILLETPLNAEQTRYINSMQHAG 837

Query: 61   IIR------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104
                     +  +        +++      D   +        + +  +           
Sbjct: 838  DALLELIDNILDLSKIEAGRMTLEERAFRLDTMVISITDFFRLQALNHNLSLVVEIAPEL 897

Query: 105  -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                 +  +    ++L NL   A      GG       D+       +   G      + 
Sbjct: 898  EQQYVLGDAGRVRQVLYNLLGNALKFTEEGGVSLHLSLDANQHIHTRVSDTGIGIAPQQL 957

Query: 164  FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D                 +              R+  E I+         L 
Sbjct: 958  -ERIFDNFTQEDSSVTRRFGGTGLGLAICRRFTELMGGRIWVESIEGQGSTFHMTLP 1013


>gi|309790686|ref|ZP_07685237.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308227280|gb|EFO80957.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 830

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 65/240 (27%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55
           AK      +     +   S + H++ +P+ AI    +LL       +       +  I  
Sbjct: 448 AKEDAEAANRAK--STFLSMMSHELRTPLTAIIGYSQLLGQLMTVGDYEGVKSDLHHIYT 505

Query: 56  SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           S    +  +                    V+ +  + +   ++   +  ++         
Sbjct: 506 SGKHLLALINDVIELSRIDSGQRNLDMRPVNIVDLVTEAVSMVRPLVTRNRNTLQIECPL 565

Query: 108 KIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARF 160
            I +      +  +I+LNL   A      G     ++ D + E     F +   G     
Sbjct: 566 DIPIVITDSLKVRQIILNLLNNAAKFTENGEITFTTIYDPQGEVPTLIFQIADTGIGIDQ 625

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I D  V          +   +       L       +  +       + +  L 
Sbjct: 626 RQIP-RIFDPFVQVDEALNRRYEGTGLGLALCRRLCEVLGGEISVQSTLGVGSIFTVRLP 684


>gi|302670412|ref|YP_003830372.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
 gi|302394885|gb|ADL33790.1| two component system histidine kinase/response regulator hybrid
           protein [Butyrivibrio proteoclasticus B316]
          Length = 1269

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 63/239 (26%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +      +     +   + + H+I +PI A+    E++     ++++++  +    + 
Sbjct: 644 MEERRARAANEAK--SNFLANMSHEIRTPINAVLGMNEVILRECKDEKILEYAQNIEGAG 701

Query: 61  IIRLKFMRLAFGYTGSVDSLIGL----------------GDIEQVIEDFIAVDKRVQVSW 104
              L  +     ++      + +                    +  +  + +   +    
Sbjct: 702 RTLLSLINDILDFSKIEAGSMEITEAEYDFSSVLNDVYNMVHIKAEQKILDLKFDIDEDL 761

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                       +I++N+   A      GG    +               +   G   + 
Sbjct: 762 PDTMYGDEMRLRQIIVNVLNNAVKYTEEGGVTLEATGIRDYGDTITLKIKITDTGKGIKK 821

Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E  T              TI+   +       L       ++ + +       + +L 
Sbjct: 822 EELPTLFDKFKRLDAEKNRTIEGSGLGLAITHSLLELMGGSIMVDSVYGKGSTFTIVLP 880


>gi|281491701|ref|YP_003353681.1| osmosensitive K+ channel sensor histidine kinase [Lactococcus
           lactis subsp. lactis KF147]
 gi|281375418|gb|ABX75619.2| Osmosensitive K+ channel sensor histidine kinase [Lactococcus
           lactis subsp. lactis KF147]
          Length = 876

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 66/233 (28%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSM 58
            +     +    L   L   I HD+ +P+ +I    +LL +       +Q+         
Sbjct: 634 QQKNEIQIEQEQLRVNLLRAISHDLRTPLTSISGHAKLLMKNDSTINKLQIQELSAYIYD 693

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--------- 109
            ++  +  +      T   + +    +   + E      K V       +          
Sbjct: 694 DSMWLINLVENLLSITRLDEKIELKLEANIIDEVVEEALKHVDRHLEQHEFSLNLADELL 753

Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKF 164
                     ++++NL   A    P   K+ +  +   +E +  +  NG        EK 
Sbjct: 754 MAKMDVALMIQVIVNLINNAVKYTPINSKIELQTKKINDELVLEVSDNGPGITDKAKEKI 813

Query: 165 TQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    +D      +       +   +  ++  +    +  +    L 
Sbjct: 814 FDLFYTDENRQVDSKRGLGLGLSLCKSIILAHGGQIYVKDNQPNGAIFGFKLP 866


>gi|82702320|ref|YP_411886.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
 gi|82410385|gb|ABB74494.1| periplasmic sensor hybrid histidine kinase [Nitrosospira
           multiformis ATCC 25196]
          Length = 697

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N     S +       + + H++ +P+ AI    +L+    ++ E +     +     
Sbjct: 305 ARNEAERASRLK--DEFLATLSHELRTPLNAILGWSQLILSGNLKKEDIHRGLETIERNA 362

Query: 62  IRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                +                      D    +    + ++        +     G+K 
Sbjct: 363 RVQNKLIEDLLDMSSIISGKVRLDMRRQDIANLVETAVESVKPTAQAKGVILKKTLGKKF 422

Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
           D     S    +IL NL   +    P+GGK+ ++V+         +  +G+       P 
Sbjct: 423 DSIIGDSNRLQQILWNLLSNSIKFTPKGGKIEVTVEQRNLFLEIRISDSGSGITSAFMPY 482

Query: 163 KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
            F +   G+           +    V  L   +   +  E   +         L 
Sbjct: 483 VFDRFRQGDASLTRQYGGLGLGLAIVKQLVELHGGTVRAESPGEGQGSSFIVNLP 537


>gi|291440124|ref|ZP_06579514.1| two component sensor kinase [Streptomyces ghanaensis ATCC 14672]
 gi|291343019|gb|EFE69975.1| two component sensor kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 455

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 13/203 (6%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75
           H++ +PI  +   LEL+ +E    +E ++L+          ++ +       R  F    
Sbjct: 250 HELRTPITIVRGHLELMGEEPAEREETVRLVTDELDRMSRIVEDLLLLARAERPDFVTPE 309

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            V       D+        A D ++  +   E +   +   + ++ L   A      G  
Sbjct: 310 PVQLAELTADVFVKARTLGARDWQLAGTADREVVLDPQRITQAMVQLAQNAVQHTTTGQT 369

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190
           + I  +   +     +  +G+  R  +    F +   G            +    V  +A
Sbjct: 370 IRIGSRAEGSRIELYVADSGSGVRPQDRELIFERFRRGTSRRGAHGSGAGLGLSIVKAIA 429

Query: 191 HENKIRLLPEIIDDHNVVLSALL 213
             +  R+  +  +         L
Sbjct: 430 EGHGGRVRLDDTEGGGATFVLTL 452


>gi|283852334|ref|ZP_06369605.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572291|gb|EFC20280.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 480

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 73/230 (31%), Gaps = 20/230 (8%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------L 55
           N    L +  + AL    + + H++ +PI  I  +++ L E   +               
Sbjct: 235 NQEHLLQARKMAALGTFTAGVAHELNNPINNITLTVDALLEDHADYLDDDGRELVADIAG 294

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGE 107
            +  A   ++ +             +   D+       +                     
Sbjct: 295 QADRAADIVRNLLDFSRTERPPLLPLAARDVAASSLALVRNQLLGAGLAVAMQVQEDLPP 354

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166
                R   ++L+N+ + A  + PRGG+VT+SV   +N E  F++  +G     PE    
Sbjct: 355 IRGDLRSLQQVLVNILLNAVQATPRGGRVTLSVAAGENGETCFAVADSGPGV-SPEVRQH 413

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +        +       L   +  R+  E  +    V +  L 
Sbjct: 414 MFEPFYTTKGVGKGTGLGLAVAYSLTRRHGGRIEVESPETGGAVFTVCLP 463


>gi|20092217|ref|NP_618292.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19917449|gb|AAM06772.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 761

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L +    A +         + + H++ +P+ +I    +LL E        +  
Sbjct: 503 RKKAEEALINAKTAAEVANRTKSEFLTNMSHELKTPLNSIIGFSDLLKEEIAGPLNEKQS 562

Query: 54  RLSS-------MSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDK 98
           R              I    + L+   +G  D  +            I  V+      + 
Sbjct: 563 RYVQFISSSGKNLLEIINDILDLSKAESGEEDLNVEKFSVDESINKVISVVLPQAQEKNI 622

Query: 99  RVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            +        + ++ +     +I+ NL   A    P GG + ++++         +K  G
Sbjct: 623 ILNYQSENRTLWITADEGKFRQIMENLLSNAIKFTPAGGSIDVTLKQEGLLVTIEVKDTG 682

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 + F +I    +          +   +    V      +   +  E         
Sbjct: 683 IGI-PEDSFEKIFKPFIQIDSSLSRNFEGTGLGLTLVKKYVEMHGGNIYVESKIGEGSSF 741

Query: 210 SALLE 214
              L 
Sbjct: 742 RFELP 746


>gi|308125760|ref|ZP_05777151.2| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           K5030]
 gi|308115384|gb|EFO52924.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           K5030]
          Length = 575

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L  L  + + I H++ +P+ AI +  E   L  +    D V   +  
Sbjct: 332 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLTR 391

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103
            S          +    +                +        +               +
Sbjct: 392 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 451

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E    + +  ++L+NL   A  ++       +         +N+ +  +  NG    
Sbjct: 452 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 511

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + +  +   +       +       L            S  L 
Sbjct: 512 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 565


>gi|260902810|ref|ZP_05911205.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308108624|gb|EFO46164.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 600

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L  L  + + I H++ +P+ AI +  E   L  +    D V   +  
Sbjct: 357 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLTR 416

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103
            S          +    +                +        +               +
Sbjct: 417 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 476

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E    + +  ++L+NL   A  ++       +         +N+ +  +  NG    
Sbjct: 477 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 536

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + +  +   +       +       L            S  L 
Sbjct: 537 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 590


>gi|239908072|ref|YP_002954813.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
 gi|239797938|dbj|BAH76927.1| putative two-component hybrid sensor and regulator [Desulfovibrio
            magneticus RS-1]
          Length = 2042

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 53/225 (23%), Gaps = 26/225 (11%)

Query: 16   ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---------- 65
            +   + + H+I +P+  +   L+LLD   ++ E  + +  +  ++    +          
Sbjct: 1667 SEFLANMSHEIRTPLNGVLGMLQLLDGTDLDAEQGEYVDNAVKASKRLTRLLSDILDLSL 1726

Query: 66   ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKIDLSRERAKIL 119
                 + +        D    + D+  +      +   V +     G          +IL
Sbjct: 1727 VESGRLVIRQEAVDPADLRGAVMDLFSLPAREKGLALSVALDPSLPGRLWADEARLRQIL 1786

Query: 120  LNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--- 171
             NL   A                    D+    +  +   G      E            
Sbjct: 1787 FNLVGNAVKFTDAGGVSVHIAPASRQFDAAFHLLVIVTDTGIGIPDDELGVIFEPFGQVE 1846

Query: 172  --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V  L       +  E            L 
Sbjct: 1847 GVYVRRFGGAGLGLSIVRRLVRLMGGEIAVESELGRGTSFHVSLP 1891


>gi|238892577|ref|YP_002917311.1| putative histidine protein kinase [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238544893|dbj|BAH61244.1| putative histidine protein kinase [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 761

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L     M  V  L   + HD  + +  I  SLEL++    +   +     ++ 
Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R    +  +V     L ++ +++   +     +++           +
Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 506

Query: 115 RAKIL---LNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++    +NL M A  ++              +VT S    ++     +  +G+     
Sbjct: 507 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               ++ +    +        +    V     ++  R+  E        +   L +
Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621


>gi|197120207|ref|YP_002140634.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197089567|gb|ACH40838.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 352

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 57/217 (26%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             + + HD+ SP+  I   ++ L       +  +   + ++ + S+    +    +    
Sbjct: 118 FVAMMTHDLKSPLTVIMGYIQALVGEKAKIDASLHLFLGEMDKSSAKMLSMIDDVLDAYR 177

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVD-----------KRVQVSWTGEKIDLSRERAKILL 120
              G +       DI  ++E                 +             S++ +++  
Sbjct: 178 LEAGLLQIDRCRCDIRPLLEGCSRDGEREAAVHGSSFQSELCDEIPPLELDSKQISRVFA 237

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STID 177
           NL   A    PR G +T S +         +   G      E                  
Sbjct: 238 NLIGNAVKFTPRRGTITFSSEVRDGFLRVQVADTGIGIPPEELPRIFNKYFRAQGAHGFK 297

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +   +  E         S LL 
Sbjct: 298 GTGLGLTISKAIVEAHGGSIGVESTAGKGSRFSVLLP 334


>gi|153839645|ref|ZP_01992312.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           AQ3810]
 gi|149746835|gb|EDM57823.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           AQ3810]
          Length = 398

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L  L  + + I H++ +P+ AI +  E   L  +    D V   +  
Sbjct: 155 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLTR 214

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103
            S          +    +                +        +               +
Sbjct: 215 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 274

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E    + +  ++L+NL   A  ++       +         +N+ +  +  NG    
Sbjct: 275 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 334

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + +  +   +       +       L            S  L 
Sbjct: 335 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 388


>gi|86160736|ref|YP_467521.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777247|gb|ABC84084.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 461

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 59/225 (26%), Gaps = 23/225 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL 69
            L +   + + H++ +P+ ++    E++ E     +  E  + + +        L+ +  
Sbjct: 217 RLKSNFLATMSHELRTPLTSVIGYSEMMLEGLGGPLTAEQREYLGIIMEKGENLLQLITS 276

Query: 70  AFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +                V  +         I     +      S          + 
Sbjct: 277 ILDISKIEAGRVRLVLSEVDAVQLMRDAVATLLPIARKKGLKVSCDPSPLPRIHADRDKL 336

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIV-----D 169
            + L+NL   A    P GG +T++ +          +  +G                  D
Sbjct: 337 RQCLVNLCSNAVKFTPPGGSITVNAEVLQGERLAIHVVDSGIGIPEEHLAKVFDVFYQVD 396

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G+         +    V      +   +          + + LL 
Sbjct: 397 GSSTREYGGAGLGLAIVKSFVEAHGGEIRVRSAAGTGSIFTVLLP 441


>gi|28897689|ref|NP_797294.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260879434|ref|ZP_05891789.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260898325|ref|ZP_05906821.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           Peru-466]
 gi|28805902|dbj|BAC59178.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087999|gb|EFO37694.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308093196|gb|EFO42891.1| C4-dicarboxylate transport sensor protein [Vibrio parahaemolyticus
           AN-5034]
          Length = 600

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L  L  + + I H++ +P+ AI +  E   L  +    D V   +  
Sbjct: 357 LRLTQDELIQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYDRVEDNLTR 416

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103
            S          +    +                +        +               +
Sbjct: 417 ISALTDRMANISQQLRSFAKKASGNELTQTRLLPVIASSKELMKPAFKSARVLLATELPT 476

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E    + +  ++L+NL   A  ++       +         +N+ +  +  NG    
Sbjct: 477 DDIEVQINTIQLEQVLVNLLTNAIEAVKEQQDKQVWLLVETDTDENKVMIHVDDNGPGLG 536

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + +  +   +       +       L            S  L 
Sbjct: 537 SHTLSE-LCEPFLTTKKNGLGLGLSISQQILAGMNGSLSAHNRAQGGARFSLCLP 590


>gi|330003775|ref|ZP_08304762.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Klebsiella sp. MS 92-3]
 gi|328536808|gb|EGF63119.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Klebsiella sp. MS 92-3]
          Length = 1080

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55
           + +     + +    +   + + H++ +P+ AI   LELL +  +     +         
Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNGGQRKEAIELAGST 642

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103
           +     +    + +    +G         D+ Q++                 +     + 
Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQVTPQWSDVAQLVSQQCHTFDALAQQKGIDLHYHNALQ 702

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +   +IL NL   A         +         +++ E    +  +G    
Sbjct: 703 EGNMLWVDPQALRQILNNLIGNALKFTVEGAIQVSCRLTPANETQGELALMVSDSGCGIS 762

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    F +              +       L    + RL            +  L 
Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSRPGVGTTFTITLP 820


>gi|326424287|ref|NP_762701.2| CheY-like receiver [Vibrio vulnificus CMCP6]
 gi|319999673|gb|AAO07691.2| FOG: CheY-like receiver [Vibrio vulnificus CMCP6]
          Length = 881

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 57/239 (23%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    + +     ++  + + H+I +P+  I    E+L +  +  +  +++     S+ 
Sbjct: 363 AKESAISANRAK--SVFLANMSHEIRTPLNGIIGMTEILSQSELSSQQKEILGDIDTSSQ 420

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +      +      + +   E  I + +     +                     
Sbjct: 421 SLLILLNDILDLSKIESGNLNISLQEADIRETVYQAMTLFQSKATSKNIELHITMGEDIP 480

Query: 106 GEKIDLSRERAKILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            + +       ++L NL   A        +           D +    F +   G     
Sbjct: 481 AKVMADDHRIKQVLTNLVGNAIKFTKEGYISTFVNYQADEHDHQGYLTFKVTDTGIGIDQ 540

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  T                    +       L       L            S  + 
Sbjct: 541 AKLETIFEPFTQEDDSITRQFGGTGLGLAICRQLVAMMGGELTATSTKGLGSCFSFTIP 599


>gi|302669411|ref|YP_003829371.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
 gi|302393884|gb|ADL32789.1| two component system histidine kinase [Butyrivibrio proteoclasticus
           B316]
          Length = 504

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 68/241 (28%), Gaps = 26/241 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           + ++    +        L S I HD+ +PI AI    + L     D    + + +++I  
Sbjct: 246 LKESAEEKILREKQNKELISNISHDLKTPITAIKGYSQGLLEGVADNPEKQMKYIRIINN 305

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------ 103
            +      +  + L      +      +             +    +             
Sbjct: 306 KANDMNNLINELTLYSSIDNNRIPYNFIRLNVGEYFGDCIEEIGADLESKSIKLNYSNLT 365

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLAR 159
               + +    +  +++ N+   +   L R     ++ I + D  +     L+ NG    
Sbjct: 366 TPDTQIVADPEQIKRVINNVVSNSVKYLDRDDGTGQIDIRILDEIDSIRVELEDNGKGIA 425

Query: 160 FPEK---FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +           I    V  +  ++   +     +     +  +L 
Sbjct: 426 QRDIPNIFDRFYRTDASRNSKQGGSGIGLSIVKKIIEDHGGYIWATSHEGEGTCMHFVLR 485

Query: 215 K 215
           K
Sbjct: 486 K 486


>gi|296446460|ref|ZP_06888404.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296256095|gb|EFH03178.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 352

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 68/234 (29%), Gaps = 25/234 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +++  +     +     +   H++ +P+ ++   +E L     D+    +  + ++R  +
Sbjct: 112 RDLTESRRVERMRVDFVANASHELRTPLASLLGFVETLQGPARDDAKARERFLSIMREQA 171

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--------- 108
                 +  +         +           ++   I          +G +         
Sbjct: 172 QRMSRLVDDLLSLSRIEQHLHLRPDTPVDLAILVAHIVDTLGPMAEDSGIELKLDATGPV 231

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  E A++  NL   A       G V IS+       +FS++ +G     PE   +
Sbjct: 232 VVPGDRDELARVAENLIENAIKYGA--GPVEISLAPLGASAVFSVRDHGPGI-SPEHLPR 288

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +                 +    V  +   ++ RL  +   D        L 
Sbjct: 289 LTERFYRVDAGKSRAKGGTGLGLAIVKHIVARHRGRLAIDSAPDKGATFRVFLP 342


>gi|317152010|ref|YP_004120058.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316942261|gb|ADU61312.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 474

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 1   MAKNICF---NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLI 53
           + +             L  +  + + + H+I +P+G I +S EL+ +     +    +++
Sbjct: 243 LREKEQLIFELQQQEKLAGMGRMVAGVAHEIRNPLGIICSSAELILKKAVNEQSPHTRIL 302

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIG------LGDIEQVIEDFIAVDKRVQVS---- 103
           +     A    + +     Y       +       L D   V  +       V +     
Sbjct: 303 QALHEEAKRLTRTVGEFLDYARPKKPTMADVNVGRLLDQVAVFMEPECEKLGVTIDREYS 362

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +   NL   A  ++ +GG+V +     +     +++  G     PE 
Sbjct: 363 GDLSAKGDKDLLYRAFYNLIANALQAMDKGGQVFLRAAREEGRLHVTVQDTGPG-FAPEH 421

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ D    +      +    V  +   + + +     DD    +  +  
Sbjct: 422 IEKVRDPFFTTKDTGTGLGLALVSAILESHGVEMHLSNADDGGARVDIIFP 472


>gi|260173810|ref|ZP_05760222.1| putative two-component regulator sensor kinase [Bacteroides sp. D2]
 gi|315922073|ref|ZP_07918313.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695948|gb|EFS32783.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 754

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44
           K+    L +  L+A          + + H+I +P+ +I     +L               
Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 572

Query: 45  -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                  + +++LI      + I   +M  +F      + +  +    QV+        +
Sbjct: 573 GTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIAPRLEFLK 632

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
              +   E         ++L N    A         K+       +      ++  G   
Sbjct: 633 EVDNIPLEINVDRERLIQVLTNFLNNASKFTETGYIKLGYIYLPDEGRVRIYVEDTGRGI 692

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+         ++       +      ++  +   R+  +         + +L 
Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGRIELKSEVGKGSRFTVVLP 749


>gi|229514161|ref|ZP_04403622.1| sensor protein TorS [Vibrio cholerae TMA 21]
 gi|229348141|gb|EEO13099.1| sensor protein TorS [Vibrio cholerae TMA 21]
          Length = 984

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   +                     +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690


>gi|167818207|ref|ZP_02449887.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei 91]
          Length = 927

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 543

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 544 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 664 TVTVALP 670


>gi|119510644|ref|ZP_01629773.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119464695|gb|EAW45603.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 752

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 77/241 (31%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           ++  F    ++ +  L S I HD+ + +  I    +LL     D       +++++ +++
Sbjct: 374 ESQLFRTQRLESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTKRLLEILEINA 433

Query: 58  MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                 +K +            ++     + +I +++++       +  +   E   +S 
Sbjct: 434 KRGADLVKQVLSFARGVEGKRITLQIRHLIVEIAKILKETFPKSIEIHTNIPNELWLVSG 493

Query: 114 ER---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155
           +     ++++NL + A  ++P  G                      ++    + ++   G
Sbjct: 494 DSTQLHQVVMNLCVNARDAMPHRGILSISAENFVVDENYARMNLEAEAGLYVVITVTDTG 553

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 E   +I +    +        +    VI +   +   +       +       L
Sbjct: 554 VGI-PQETLDRIFEPFFTTKPVGQGTGLGLSTVIGIVKSHGGFINVYSEVGNGTSFKVYL 612

Query: 214 E 214
            
Sbjct: 613 P 613


>gi|163941050|ref|YP_001645934.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163863247|gb|ABY44306.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 418

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 66/226 (29%), Gaps = 16/226 (7%)

Query: 4   NICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
            I   +   +   + + L + I H+I +P+  +    +LL ++   +    + + +  + 
Sbjct: 193 KIKERMQRAEKFYIASELAASIAHEIHNPLTTVRGFTQLLNEDESAKMSQDKYLEIMLLE 252

Query: 60  AIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  +      T   +                 +I  +   +    K+   + +   
Sbjct: 253 MQQIQSTINNYLSLTKPQNIIKEELDINYILNQVKDNISPLALSYNVEIKQHITTDSLYI 312

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              + +    L N+      ++  GG + I++Q  K   +  +   G      +   +I 
Sbjct: 313 NANTEKLKICLTNIIQNGIEAMKNGGVLQINIQKIKGNIVIDIIDTGIGMSSQQIK-RIA 371

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +T     +       +  E    +  E         S  + 
Sbjct: 372 LPFYSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTHFSITIP 417


>gi|114320848|ref|YP_742531.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227242|gb|ABI57041.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 691

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 60/228 (26%), Gaps = 21/228 (9%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAI 61
              + +  L AL  L + + H+I +P   I  ++++L  +       V + + L      
Sbjct: 442 QQLVVAEKLAALGELTAGVAHEINNPTAVILGNMDVLIQELGEGVQPVRREVDLIIEQVY 501

Query: 62  IRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                +     Y+            D    +     +I       +    +W G    + 
Sbjct: 502 RIRDIVDNLLQYSRPGDYVGIVSETDVNTVVQQSVDLIGHLSRRREVAVETWLGACRTVR 561

Query: 113 RERAKILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               ++   L  +        +   G     +        + S+  NG           I
Sbjct: 562 ISPRELQQVLVNLLLNALHAVADRSGRVRVATTDWDDRGVVISVSDNGVGIPEQAL-DHI 620

Query: 168 VDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    + ++     +       L      ++  E  +         L
Sbjct: 621 FNPFYSTRVEGEGTGLGLSISYGLIRRYGGQITVESQEGEGSRFRVWL 668


>gi|90422120|ref|YP_530490.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90104134|gb|ABD86171.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 566

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 65/246 (26%), Gaps = 35/246 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M + +   + +++      + + H++ +P+ ++ +++E L           ++++I    
Sbjct: 322 MTEALYNRIEAIE---RFAADVSHELKNPLTSLRSAVETLPLAKNEKSRSRLLEVIEHDV 378

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFI-------AVDKRVQV 102
                 +  +                 VD    L  +  V  +          V      
Sbjct: 379 KRLDRLISDISDASRLDAELQRQDVAPVDLRRLLATLTSVANETKLGTNVGVEVRFEGAG 438

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +             +++ NL + A +    GGKV I  +  K E    +  +G   R   
Sbjct: 439 NDAFWVPGHDSRLGQVISNLLVNAQSFSSAGGKVRIVCRRRKTEIEIVVDDDGPGIRDDA 498

Query: 163 KFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNVV 208
                     +           +       +   +  ++  E                  
Sbjct: 499 LEKIFERFYTDRPHQGFGQNSGLGLSISKQIVEAHGGKIWAENRPGPVDADGEPSFAGAR 558

Query: 209 LSALLE 214
               L 
Sbjct: 559 FVVRLP 564


>gi|46123237|ref|XP_386172.1| hypothetical protein FG05996.1 [Gibberella zeae PH-1]
          Length = 2544

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 64/246 (26%), Gaps = 33/246 (13%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
             +N+     +    ++  + + H++ +P+  +  + ELL +  +  + +++     +SA 
Sbjct: 1909 KRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSELNRDQLEMADSIRVSAD 1968

Query: 62   IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---- 103
            +                  M+L        D +  +              K V++     
Sbjct: 1969 LLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKNVKIVQSIN 2028

Query: 104  -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLA 158
                          ++L NL   +      G                   F ++  G   
Sbjct: 2029 LPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETQEHATLTFWVRDTGIGI 2088

Query: 159  RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--L 209
               +   ++                   +       L     K ++  E  ++       
Sbjct: 2089 PPQQL-AKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEENVGTTAWF 2147

Query: 210  SALLEK 215
            +   EK
Sbjct: 2148 TVTFEK 2153


>gi|325125675|gb|ADY85005.1| Sensor histidine kinase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 552

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     E   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|288556019|ref|YP_003427954.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547179|gb|ADC51062.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 599

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 62/234 (26%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           +++        L     + + H++ +P+  +    E + +        + E  ++I   S
Sbjct: 355 RDMTEERRHDKLRKDFIANVSHELRTPVSMLQGYSEAIIDDIAGSEEDKKEFAKIIYDES 414

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWT 105
           +     +  +            L           D I    +              V   
Sbjct: 415 LRMGRLVNELLDLARMEAGHIELHMEAVELGAFSDRIVRKFQGYAKDEGVALRLDHVEDG 474

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++L NL   A       G+VT+ V+ ++    F +   G+     +   
Sbjct: 475 YTNSFDPDRIEQVLTNLIHNAIRHTGENGRVTVKVRSNEYGVKFDVIDTGSGIPEEDLPY 534

Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +           +       +   +K ++      D     S  + 
Sbjct: 535 VFERFYKADKARTRARGGTGLGLAIAKNIVDAHKGQISVHSKIDEGTTFSFFIP 588


>gi|271502325|ref|YP_003335351.1| integral membrane sensor signal transduction histidine kinase
           [Dickeya dadantii Ech586]
 gi|270345880|gb|ACZ78645.1| integral membrane sensor signal transduction histidine kinase
           [Dickeya dadantii Ech586]
          Length = 470

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGQEDEYLAESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++                   D    LG++      +                     
Sbjct: 277 CNAIIEQFIDYLRTGQEMQMEVADLNAILGEVVASESGYEREIDSELTLGELPMKVSPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171
             + + NL + A        +V+   +       F ++ +G           F   V G+
Sbjct: 337 IKRAVANLVVNAARYGNGWIRVSSGRELQ--RAWFQVEDDGPGIDPSQLAHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A L 
Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHNGSLDVGKSERGGLRVRAYLP 437


>gi|220908923|ref|YP_002484234.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865534|gb|ACL45873.1| Cache sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 970

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 53/237 (22%), Gaps = 28/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+ AI    E+L E   + E  + +        
Sbjct: 467 ARQAAEAANQAK--STFLANMSHELRTPMNAIIGYSEMLIEEAADLEPEEFVPDLQKIQA 524

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------------- 106
                + L            G  D+        ++   V  +                  
Sbjct: 525 AGKHLLSLINDILDLSKIEAGRMDLYLETFSLQSLLDGVIATIQPLLEKNSNTLEVKAPT 584

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     +  + L NL   A     RG       +       F +   G     P++
Sbjct: 585 DLGSMHADLTKVRQSLFNLLSNACKFTDRGTITLTVTRQDDA-INFKVSDTGIGM-TPDQ 642

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++                   +               +  E         +  L 
Sbjct: 643 MARLFQPFTQADASTTRKYGGTGLGLTITNRFCQMMGGNITLESTPGVGTTFTVSLP 699


>gi|217978045|ref|YP_002362192.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503421|gb|ACK50830.1| multi-sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 792

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 55/219 (25%), Gaps = 26/219 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKF------- 66
           + + H++ +P+ AI    ELL +            V++ +  +    +  +         
Sbjct: 566 ANMSHELRTPLNAILGYAELLRDGLYGELPDRAKSVLERVESNGAHLLGLINDVLDLSKL 625

Query: 67  -----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                  +   Y+        +G    + +       +             R   ++L+N
Sbjct: 626 EAGELSLVLDEYSMRNIVEQAIGATYSLAQAKGLRIDQTIEEPMPLGRGDERRLTQVLIN 685

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           +   A       G V I  Q   +     +   G     PE   +I +            
Sbjct: 686 ILSNAIKFTDE-GYVAIKAQTLADMFEIVVTDTGPGI-PPEDQARIFEAFQQGDNTSTRL 743

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +           +   +            + L+ 
Sbjct: 744 KGGTGLGLSISRRFVEMHGGAISVASKLGEGSSFTILVP 782


>gi|104773979|ref|YP_618959.1| phosphate regulon sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116513987|ref|YP_812893.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|103423060|emb|CAI97765.1| Phosphate regulon sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|116093302|gb|ABJ58455.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 552

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     E   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|307301500|ref|ZP_07581260.1| histidine kinase [Sinorhizobium meliloti BL225C]
 gi|152171|gb|AAA63511.1| dicarboxylate sensor protein [Sinorhizobium meliloti]
 gi|306903557|gb|EFN34145.1| histidine kinase [Sinorhizobium meliloti BL225C]
          Length = 621

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48
           +       + +  L     + + + H+I  P+  I    +                  + 
Sbjct: 390 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMES 449

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           + +L            +F R      G       +     +    F      +++    +
Sbjct: 450 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRIDLPPD 509

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
            +          ++L+NL   A  ++       I V+          ++  NG      +
Sbjct: 510 GLQALGNRIRLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGIALTVADNGPGI-AAD 568

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++      S  D   +       +  +    +  E         +  L+K
Sbjct: 569 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFTVNLKK 620


>gi|152172|gb|AAA63512.1| dicarboxylate sensor protein [Sinorhizobium meliloti]
          Length = 616

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48
           +       + +  L     + + + H+I  P+  I    +                  + 
Sbjct: 385 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMES 444

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           + +L            +F R      G       +     +    F      +++    +
Sbjct: 445 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRIDLPPD 504

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
            +          ++L+NL   A  ++       I V+          ++  NG      +
Sbjct: 505 GLQALGNRIRLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGIALTVADNGPGI-AAD 563

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++      S  D   +       +  +    +  E         +  L+K
Sbjct: 564 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFTVNLKK 615


>gi|308047811|ref|YP_003911377.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ferrimonas balearica DSM 9799]
 gi|307630001|gb|ADN74303.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Ferrimonas balearica DSM 9799]
          Length = 351

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 70/234 (29%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + I   L          LL   + H+I +P+G +  + +LL+    + E+ +   +   
Sbjct: 112 QQRISQELQHYAQQHAAQLLVRGLAHEIKNPLGGLRGAAQLLERELDDPELKEFTTIIIE 171

Query: 59  SAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            +      +         G     +    L  + ++ E        ++  +     D   
Sbjct: 172 QSDRLRGLVDRLLGPQYPGTWAEGNVHRLLEQVARLCEMEATGTLVIERDYDPSIPDFVM 231

Query: 114 ERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  ++   L  +   +                 G+ TI+ +  +     S+  +G     
Sbjct: 232 DAEQLQQALLNIVRNAVQALDGQGRIVLRTRSQGQTTIAGRRHRQVVAVSVVDDGPGIDP 291

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V +  D   +       +  +++ R+  E    H    + LL 
Sbjct: 292 S-IQDTLFYPMVTNKADGSGLGLSIAQKIVSQHQGRIELESWPGH-TEFTLLLP 343


>gi|322420752|ref|YP_004199975.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
 gi|320127139|gb|ADW14699.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           M18]
          Length = 672

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 78/241 (32%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
           + +     + S  +  L  + +   H++ +P+  I  ++++L    +   +         
Sbjct: 421 LKEAQAKLIQSEKMATLGEVIAGAAHELNNPLAGILGAIQMLRGSALAHPIDPELMEGID 480

Query: 50  -MQLIRLSSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-KRVQVS 103
            ++ I  +++         ++F   A      +D    L D  +++         +V++ 
Sbjct: 481 VLESIESAAIRCQKIVEDLVRFTTQARCNFSEMDINQVLKDTMEIMAGPFGEQKIKVKLH 540

Query: 104 WTGEKIDLSRERAK---ILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKING 155
              E   +  +  K   + +NL   A ++LP GG++ I          + +    ++ NG
Sbjct: 541 LDPEVPQIDGDFVKLLEVYVNLLQNAKSALPNGGRIDISTSLVKKYGEQLQVAVVIRDNG 600

Query: 156 NLARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I D    +        +       +   +   +           ++  +
Sbjct: 601 CGIPPQNL-AKIFDPFFTTKPAGKGPGLGLTVSYGIVKRHGGDIDVRSTVGKGTEVTVTV 659

Query: 214 E 214
            
Sbjct: 660 P 660


>gi|229528414|ref|ZP_04417805.1| sensor protein TorS [Vibrio cholerae 12129(1)]
 gi|229334776|gb|EEO00262.1| sensor protein TorS [Vibrio cholerae 12129(1)]
          Length = 984

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   +                     +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690


>gi|229195596|ref|ZP_04322362.1| hypothetical protein bcere0001_11630 [Bacillus cereus m1293]
 gi|228587845|gb|EEK45897.1| hypothetical protein bcere0001_11630 [Bacillus cereus m1293]
          Length = 466

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 64/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    ++K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIMITLRQIDDYCELNIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H ++ +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHEGQWRIESEKGNGTTVSIKLK 458


>gi|220933213|ref|YP_002512112.1| histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994523|gb|ACL71125.1| histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 485

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 70/227 (30%), Gaps = 14/227 (6%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            + +   L  S  L A+  L + + H++ SP+G I    +     L +       +  IR
Sbjct: 255 QRALEARLRESEKLAAIGQLAAGVAHELGSPLGVIDGKAQRGLRRLMDDDPLKRDLGEIR 314

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL 111
                    ++ +               L ++ +     +        V+V   GE   L
Sbjct: 315 AEVARMGGIVRQLMDFGRRNPLRRRPESLPELVRAEARRVTRGGCRVAVEVQEGGEMPPL 374

Query: 112 SRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +R+++   L  +   ++     +V ++      +    ++ +G          ++ + 
Sbjct: 375 PLDRSRLEQALGNLLRNAVQAARSRVRVAWSHDDRQARVVVEDDGPGIDPS-VRARLFEP 433

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    +   +          ++   L+ +         +  L +
Sbjct: 434 FFTTKAVGEGTGLGLSVAHGAVSDHGGTLVVDRSPLGGARFTLSLPR 480


>gi|172038471|ref|YP_001804972.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
 gi|171699925|gb|ACB52906.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
          Length = 1680

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 74/242 (30%), Gaps = 30/242 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            ++I        L     S + H++ +P+ ++  +L LL      +E    + +++++  +
Sbjct: 1433 QDITERRELDRLKTEFISVVSHELRTPLTSMRGALGLLNAGVLQEEPETVEHMLKIVLRN 1492

Query: 57   SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTG 106
                I      + L    +G V  +  +  ++ ++ D +     +             + 
Sbjct: 1493 CDRLIRLVNDILDLERLESGKVRLIKEVCQVDNLLTDAVETISAMATEASITIELTSISA 1552

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVT---------ISVQDSKNENIFSLKINGNL 157
                      + L NL   A      G K+           S   + +  +FS+K  G  
Sbjct: 1553 YVWASHDAIIQTLTNLLSNAIKFSTEGTKICLTAKLFNDPDSTAQTPSFVLFSVKDQGRG 1612

Query: 158  ARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                +  T       VD +         +       +  ++  R+  + I          
Sbjct: 1613 IPTNKLQTIFGRFQQVDASDARQKGGTGLGLAICQSIIQQHNGRIWVDSILGEGSTFYFT 1672

Query: 213  LE 214
            + 
Sbjct: 1673 VP 1674


>gi|153007726|ref|YP_001368941.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
 gi|151559614|gb|ABS13112.1| histidine kinase [Ochrobactrum anthropi ATCC 49188]
          Length = 430

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 66/240 (27%), Gaps = 30/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++    +    + +   +   H++ +P+ ++   +E L      +    D  + +++  +
Sbjct: 191 QSETRRID--RMRSDFIANASHELRTPLASLRGFIETLQGPARNDAAARDRFLDIMQKQA 248

Query: 58  MSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                 +              + +      +         +  +        +R      
Sbjct: 249 ERMSRLIDDLLSLSRLEMRAHLAVNECVDMTSILNHVADTLTPLAAGLDISIERQLPDHP 308

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                   E  ++  NL   A      G +V + + +  +    E + S++  G      
Sbjct: 309 VTVTGARDELIQVFQNLVENACKYGQAGKRVIVKLDEDNSGSSAEVVASVQDFGPGI-AA 367

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E   ++ +                 +    V  +   ++ RL+           +  + K
Sbjct: 368 EHLPRLTERFYRIDVETSRAQKGTGLGLAIVKHILARHRGRLVVRSQLGEGSTFTVRMPK 427


>gi|153829186|ref|ZP_01981853.1| sensor protein TorS [Vibrio cholerae 623-39]
 gi|148875299|gb|EDL73434.1| sensor protein TorS [Vibrio cholerae 623-39]
          Length = 984

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +         +          +  E  I +   +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690


>gi|45657401|ref|YP_001487.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45600640|gb|AAS70124.1| histidine kinase sensor protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 731

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 66/241 (27%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSM------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            +    NL            +   + + H++ +P+ +I     L+      +   + + L
Sbjct: 324 QRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQFPEGMERENRYLDL 383

Query: 56  SSMSAIIRLKFMRL-----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
              S +  L  +                    F     + + + +   E + +      +
Sbjct: 384 IFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEAITKKLEMTFE 443

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
               +   E     +   +++LNL   A       GK+ I++   +N    +++ +G   
Sbjct: 444 FFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQLAVQDSGIGI 503

Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E                +  +   +    V  +   +   +  E           + 
Sbjct: 504 PTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESALGKGSKFVVIF 563

Query: 214 E 214
            
Sbjct: 564 P 564


>gi|24215121|ref|NP_712602.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24196185|gb|AAN49620.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 731

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 66/241 (27%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSM------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            +    NL            +   + + H++ +P+ +I     L+      +   + + L
Sbjct: 324 QRTEELNLQKEMAEKANKAKSEFLANMSHELRTPLNSIIGFSRLMQFPEGMERENRYLDL 383

Query: 56  SSMSAIIRLKFMRL-----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
              S +  L  +                    F     + + + +   E + +      +
Sbjct: 384 IFHSGVHLLNIINDILDLSRIEADKLVLNESDFDLKELISTSVEMILGEAITKKLEMTFE 443

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
               +   E     +   +++LNL   A       GK+ I++   +N    +++ +G   
Sbjct: 444 FFPKNANFEIRADPKRIRQVILNLLGNAIKFTDSTGKILITLNKLENNFQLAVQDSGIGI 503

Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E                +  +   +    V  +   +   +  E           + 
Sbjct: 504 PTEEISKIFETFYQVKGEDRAAYEGSGLGLPIVKKIVEAHHGSIQVESALGKGSKFVVIF 563

Query: 214 E 214
            
Sbjct: 564 P 564


>gi|116626863|ref|YP_829019.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230025|gb|ABJ88734.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 822

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 59/218 (27%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVG--------------IEDEVMQLIRLSSMSAIIRLK 65
           S + H++ +P+ AI    ELL                   E + +  +    +       
Sbjct: 603 SLVSHEMRTPLTAIQGMTELLAAYDVEPSRRREMNLAINDEVKRLARMITEYLDITRLES 662

Query: 66  FMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                      V+      L  IE +         R   +     +      ++ + NL 
Sbjct: 663 GATQMRMAAVRVESILERILILIEPIAAQRQIQLVRQIPADLPAVLADPDLFSRAVENLV 722

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A    P G  VT+S +  ++     +   G      +   +I +          + + 
Sbjct: 723 TNAVKYSPNGTTVTVSARAEEDCLWIDVADQGYGIPETDLS-RIFEKFYRVPRVQDAGVP 781

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  +A  +   +            +  + +
Sbjct: 782 GTGLGLSLVREIAELHHGSVAVRSEVGKGSTFTLRIPR 819


>gi|291551174|emb|CBL27436.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain
           [Ruminococcus torques L2-14]
          Length = 352

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 30/242 (12%)

Query: 4   NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLS 56
            +     + + VA       L S I HD+ +PI AI   +E + +      E M     +
Sbjct: 102 RLRLKAQAEEKVAFDRENKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIRT 161

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------R 99
             +    +  +         +D+     +   +       D                  R
Sbjct: 162 IYNKANEMNLLINELTLYSKIDTNRIPYNFTTISAKGYFADCAEDLSVELESKGAEFTYR 221

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLA 158
             +    + I    +  +++ N+   +     +             +     L  NG   
Sbjct: 222 NFMEEDSKVIVDPEQLRRVINNIVSNSIKYTDKPKVKITMDVKDVGDFIQVELGDNGKGI 281

Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    F +    +           I    V  +  E+  ++     +     +  ++
Sbjct: 282 AAKDLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSEEGVGTTMYFVI 341

Query: 214 EK 215
            K
Sbjct: 342 RK 343


>gi|291535461|emb|CBL08573.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 478

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM------ 67
             S + HD  SP+ +I   +E + +      ++D+ + +I   +       K +      
Sbjct: 252 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLLELNKF 311

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLN 121
                     S D    +    Q  E            +    T        +  ++L N
Sbjct: 312 GSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYN 371

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177
           L   A         +TI   +   +   S+K  G         + + +    ++    D 
Sbjct: 372 LIDNALKFSHANSAITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDK 431

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +   +     +         L 
Sbjct: 432 KGTGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLP 469


>gi|229016834|ref|ZP_04173762.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
 gi|229023039|ref|ZP_04179554.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228738262|gb|EEL88743.1| hypothetical protein bcere0029_13840 [Bacillus cereus AH1272]
 gi|228744395|gb|EEL94469.1| hypothetical protein bcere0030_14020 [Bacillus cereus AH1273]
          Length = 591

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 68/237 (28%), Gaps = 27/237 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           M +          +     + + H++ +P+  +    E + +  ++ +    + +++   
Sbjct: 355 MTEERRL----EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYD 410

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG 106
            ++                      + G VD    +  I  +        + ++ V +  
Sbjct: 411 ESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQS 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +     ++L NL   A      GG VT+ +    +   F ++ +G      + 
Sbjct: 471 PIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTENSGLTFEVQDSGAGIPEEDI 530

Query: 164 ---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   T        +       +   +  ++    +       S  L 
Sbjct: 531 PFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSVYLP 587


>gi|159045872|ref|YP_001534666.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
 gi|157913632|gb|ABV95065.1| sensor histidine kinase/response regulator [Dinoroseobacter shibae
           DFL 12]
          Length = 819

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 58/238 (24%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      +      L  + + H++ +P+  +    ELL+E  +++E    +     S 
Sbjct: 200 LARTRAEAANRAKSAFL--ANMSHELRTPMNGVVAMSELLNESALDEEQALYVETIRKSG 257

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
                                  +    D    + D+  + +               +  
Sbjct: 258 EALLVIINDVLDYSKMEAEKLQLHPAPFDLERLMHDVVMLTKPTAQEKSVDLMLDYDIFL 317

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160
               I       +++ NL   A      G  +   +         E I S++  G     
Sbjct: 318 PSHFIGDQGRLRQVMTNLLGNAVKFTLEGHVLIRVIGMPPEDGTQEIIVSIEDTGIGIAP 377

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                   + N          +   +       L       +  +         S  +
Sbjct: 378 EMIDHIFGEFNQAEDERNRAFEGTGLGLAITKQLIDLMGGEIWVDSEIGEGSCFSFRI 435


>gi|219847438|ref|YP_002461871.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541697|gb|ACL23435.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 554

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 60/220 (27%), Gaps = 26/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG--- 72
           + + H++ +P+ AI    +LL             ++ I  S    +  +  +        
Sbjct: 313 ATMSHELRTPLNAILGYAQLLHIQKVVPDSHQPYLERILTSGRHLLSLISNVLDFARIEQ 372

Query: 73  -----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKILLNLF 123
                    V+    + ++  +             +    +I       R   ++L+NL 
Sbjct: 373 GALDLDYRPVEVAALVEEVVSMTLPLAQRHHNRIETDCPPEIGVIETDGRRLRQVLINLL 432

Query: 124 MVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
             A           +VT    + ++   F++   G     P+K  ++          V  
Sbjct: 433 SNAAKFTEDGLIRLEVTAIQHNGRDGLRFAVHDTGIGI-PPDKQHKLFQPFSQVDDSVTR 491

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +       +       +  +         S  + 
Sbjct: 492 RYEGTGLGLALSKQIVEALGGTITVQSTVGVGSTFSVWIP 531


>gi|159897122|ref|YP_001543369.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890161|gb|ABX03241.1| response regulator receiver sensor signal transduction histidine
           kinase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 397

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 69/238 (28%), Gaps = 28/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSM 58
           A N    L          + I H++ +P+  IH  ++LL+   +    D   + + L   
Sbjct: 159 ANNRLTRLDQAK--NDFLATISHELRTPLTVIHGYIDLLNMQALGPVSDGQREALELMKR 216

Query: 59  SAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------Q 101
           ++   L+ +                   D    +  I   ++       +          
Sbjct: 217 NSTRLLRHINDLIYLQQVRSNQMDFAQADLRGLVQSICNDMQPTFLEKNQTLVRNIYVSG 276

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +                + +L   A     +GG + +SV         S++ NG      
Sbjct: 277 IQTPLMIHMDVHGVDNAVRHLLENATQYTAQGGVIQVSVYQDDQLVRVSIRDNGVGI-PE 335

Query: 162 EKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + F +I +  V      ++I    +       +A  +   +  E       + +  L 
Sbjct: 336 DDFERIFEPFVRLDDTLASIGGAGLGLVIAKHVAEAHNGTVSLESTVGVGSIFTLQLP 393


>gi|57234234|ref|YP_181736.1| sensory box sensor histidine kinase/response regulator
            [Dehalococcoides ethenogenes 195]
 gi|57224682|gb|AAW39739.1| sensory box sensor histidine kinase/response regulator
            [Dehalococcoides ethenogenes 195]
          Length = 1258

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 23/235 (9%)

Query: 2    AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
             +       S     L A+  + + I H+I +P+  +     +L +         E +Q+
Sbjct: 884  EEQKKLRHQSEMSSRLAAIGEMAAGIAHEINNPLTGVIGFASILMDREDLPPDAMEQLQI 943

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107
            I   S   +  +K M      +  V S I + ++               +  V   +   
Sbjct: 944  INSGSQRVVEIVKRMLTFARQSKPVRSSINITELIDNTLELRSYVLKTANIDVVRHYEPG 1003

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLARFP 161
               L+ +  +I   +  +   +     K        I+V  + +    S + NG      
Sbjct: 1004 LPLLTVDSGQIQQVILNLILNAEYSMKKAHEKGTLTITVSRTGDRIRMSFRDNGMGM-SA 1062

Query: 162  EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++      +    +   +       +  E+   +  E I          L 
Sbjct: 1063 ETLGKLFQPFFTTKEPGEGSGLGLSLSHGIILEHDGTIRGESIPGEGAEFIVELP 1117


>gi|320352608|ref|YP_004193947.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
 gi|320121110|gb|ADW16656.1| histidine kinase [Desulfobulbus propionicus DSM 2032]
          Length = 376

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLS-----SMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           +A      L      +  L     L + + H++  P+ +I    +L  +       +   
Sbjct: 136 LANEQRSQLEDQLRHADRLAKVGQLTAGVAHELNEPLASILGFAQLATKKIDAPVHVARY 195

Query: 54  R--------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSW 104
                     +       + F      +   +D    L + +  +   F  VD + + ++
Sbjct: 196 LDKIIQSTLHAREIIKKMMLFSSPVPNHKAKIDLNAVLAEGMAFIEPRFAKVDIQFKSTF 255

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             E   +  + ++I   L      A  ++   G +T+    +       ++ NG      
Sbjct: 256 DPELPPILADASQITQVLINLVINAIHAMDSMGTLTLRTARAGRLVQMVVQDNGIGMDQQ 315

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               QI      +        +    V  +   +   +  +    +    +    
Sbjct: 316 TL-EQIFLPFFTTKDLDHGTGLGLSVVHGIVSAHDGTIDVKSEIGNGTTFTITFP 369


>gi|302035935|ref|YP_003796257.1| hypothetical protein NIDE0557 [Candidatus Nitrospira defluvii]
 gi|300603999|emb|CBK40331.1| protein of unknown function, putative Histidine kinase [Candidatus
           Nitrospira defluvii]
          Length = 949

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 61/237 (25%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           +     L  MD L +   + + H++ +P+ +I    + + E         +++ +  I+ 
Sbjct: 568 EAANAQLKQMDRLKSKFLAHVSHELRTPLTSIVGFADNMLEGLVGSLNMKQEQYLTRIKA 627

Query: 56  SSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +       +  +                           +  +  +        +     
Sbjct: 628 NGTRLARMITDLLDLSRVEAGKLVLSFEQVCLPTLVSDVVEQLLPLAITKHLNIELQSPD 687

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPE 162
                       ++IL NL   A    P GG+V +    D+ +     ++ NG       
Sbjct: 688 PELLVWADQDRLSQILTNLLDNAIKYTPDGGQVAVELSVDTHDMARIVIRDNGQGIPSDA 747

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           S      +    V  L   +   +      D     +  L 
Sbjct: 748 LPKLFDPFFRVQQEERSQTKGLGLGLAIVKDLVDLHGGSITVRSEVDQGTEFTFTLP 804


>gi|209963966|ref|YP_002296881.1| sensor histidine kinase [Rhodospirillum centenum SW]
 gi|209957432|gb|ACI98068.1| sensor histidine kinase [Rhodospirillum centenum SW]
          Length = 878

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 54/219 (24%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             + + H++ +P+ A+    +LL +  +  E  + + L   +    L  +     ++   
Sbjct: 392 FVAVMSHEVRTPLNALLGFADLLLQTPLTAEQREWVTLQREAGEALLTVVSDVLDFSKLE 451

Query: 78  DSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKILLN 121
              + +      +                         V           ++   ++LLN
Sbjct: 452 AGRLEVDPHPFQLARLARSTSDLVRPTAEERGLALRVAVDPRLPEVVQGDAKRVRQVLLN 511

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VEST 175
           L   A     RG         +     F +   G     PE+  ++              
Sbjct: 512 LLNNAVKFTERGHVALAVFPVADGRVRFEVLDTGIGI-APEQQERLFQEFVQADRATARR 570

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       L       +  E       +    L 
Sbjct: 571 YGGTGLGLAICRRLVDLMGGAIGVESAPGRGSLFWFELP 609


>gi|182413664|ref|YP_001818730.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840878|gb|ACB75130.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 785

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 73/233 (31%), Gaps = 29/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRLSSMSAI 61
             ++ + LL   + HD  + +  I      L+E              ++      +    
Sbjct: 413 QKLEAIGLLAGGVAHDFNNILQVIRGHAGFLEESLAGAAAPLEDVRTILSASERGAQLTR 472

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKI 118
             L F R       +V++   + D+ +++   +     VQ++   E      ++    ++
Sbjct: 473 QLLAFSRKQPLLPEAVEANALVTDLVKMLRRVLGEHIEVQLALLPEPCTFVADKAQLEQV 532

Query: 119 LLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPEK 163
           LLNL + A  ++P GG++ I ++                     + ++   G      E 
Sbjct: 533 LLNLCVNARDAMPSGGRLRIELKQTTLAAADTASLPELKPGPHLVLTVSDTGCGM-RREL 591

Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +        +    V  +  ++   +          V   LL 
Sbjct: 592 VEHLFEPFFTTKAPGHGTGLGLSVVYGVVRQHGGAIRVYSEVGQGSVFRILLP 644


>gi|163758655|ref|ZP_02165742.1| periplasmic sensor signal transduction histidine kinase [Hoeflea
           phototrophica DFL-43]
 gi|162283945|gb|EDQ34229.1| periplasmic sensor signal transduction histidine kinase [Hoeflea
           phototrophica DFL-43]
          Length = 360

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 17/234 (7%), Positives = 64/234 (27%), Gaps = 19/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----------LLDEVGIEDE 48
           + K     + +  L AL  + + + H+I  P+ A+ +  +            +       
Sbjct: 113 LRKTQKDLVQAGKLAALGQMSAALSHEINQPLAAVKSYADNAALYIERNRTAEAKANIAR 172

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104
           + ++    +  +     F R       ++     + +   +++  +              
Sbjct: 173 ISEMTDRMAKISRHLRNFARRPGDKLNAIPVCEVIREAVALMDPQVRKSGSRISFASGQT 232

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162
               +       ++L+N+   A  ++    +  + +    +       ++ +G   +   
Sbjct: 233 EHWVLGGRLRLQQVLVNIMTNAIDAMEGQSQKLMDISIDCADETVAIHVRDHGPGLKQDA 292

Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                              +       +  +   +L      D   + +  L +
Sbjct: 293 LNQAFEAFFTTKDAGAGMGLGLSISYNIIEDFGGKLTASNHPDGGGIFTVELRR 346


>gi|154491848|ref|ZP_02031474.1| hypothetical protein PARMER_01472 [Parabacteroides merdae ATCC 43184]
 gi|154088089|gb|EDN87134.1| hypothetical protein PARMER_01472 [Parabacteroides merdae ATCC 43184]
          Length = 1375

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 24/239 (10%)

Query: 1    MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLE---------------LLDEVG 44
            M +     +  ++   L   S I H+  +P+  I + +E               LL    
Sbjct: 833  MERKEKEAIEELNQAKLQFFSNISHEFRTPLTLIISQIELLLQSSSLSPSVYNKLLKVYK 892

Query: 45   IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                +  LI        +    M+L       V  L  +           ++        
Sbjct: 893  NTYHMRNLISELLDFRKLEQGHMKLKVYEQDIVPFLKEIYLSFYEYASSRSITYNFTAPQ 952

Query: 105  TGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     ++ + +  NL   A         + + +++ +NE    +  NG      + 
Sbjct: 953  ENVLCYFDPKQMQKVFYNLLSNAFKYTKPNAAIEMILENKENEVTIKVIDNGIGISKEDI 1012

Query: 164  FTQIVDGNVE-------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                             +   S  I       +   +   +  E    +  +    L+K
Sbjct: 1013 DKIFDRFYQAENGISNITKTPSTGIGLSLTKSIIELHHGTIQVESTPGYGSIFIVHLQK 1071


>gi|138895034|ref|YP_001125487.1| sensor histidine kinase [Geobacillus thermodenitrificans NG80-2]
 gi|196248392|ref|ZP_03147093.1| histidine kinase [Geobacillus sp. G11MC16]
 gi|134266547|gb|ABO66742.1| Sensor histidine kinase [Geobacillus thermodenitrificans NG80-2]
 gi|196212117|gb|EDY06875.1| histidine kinase [Geobacillus sp. G11MC16]
          Length = 367

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 14/217 (6%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             + L+  + S   H+  +P+ AI   ++LL         + +I         R+     
Sbjct: 152 DRLTLLGQMSSSFVHEFRNPLTAIIGFIQLLKFEHPHLPYLDIIDHELQQLKFRISQFLH 211

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                              L  + D          VD  + +  +        +  ++L+
Sbjct: 212 ASRKEIVESEKETFSLRQLLEEIMDFLYATIVDSDVDISLAIDESIHIFAYKDQLRQVLV 271

Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           N+ + +  ++    K        +  +   I  +  NG      +    I +    +   
Sbjct: 272 NILLNSIEAVKEKEKPRRIKIAARSQEGRVIIEIANNGPAI-PADIVETIFEPFFTTKKL 330

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I  Y    +  ++   +     D +    S  L 
Sbjct: 331 GTGIGLYICKKVIEDHGGEISC-SSDANMTTFSIRLP 366


>gi|189426007|ref|YP_001953184.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189422266|gb|ACD96664.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 810

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 66/247 (26%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHN----SLELLDEVGIEDEV 49
           + +N    + +           +L  + + H+I +P+ AI       +E LD   +++  
Sbjct: 417 LRQNQQDLVQARQAAEGANEAKSLFLANMSHEIRTPLNAIIGINSLLVERLDAGELKELA 476

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------ 103
              +  ++    I    + ++    G ++ +    D   +I     +   +         
Sbjct: 477 KDSMAAANNLLDIISDVLDISKIEAGKLEIVTVPFDPRMLINQLERMFGAIVREKGLRFD 536

Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKI 153
                   G  +       +I +NL   A     +G            DS  +    +  
Sbjct: 537 VSLGASLPGLLLSDPARIQQIGVNLLSNALKFTEQGTIRLRLTGSTLDDSTVQLDLIVSD 596

Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           +G      E   ++                   +       LA      +  E       
Sbjct: 597 SGKGI-LAENIERVFSPFVQEDLSTTRKFGGTGLGLAISRHLAEMLGGSIKVESRIGEGS 655

Query: 208 VLSALLE 214
             +  + 
Sbjct: 656 TFTCSIP 662


>gi|84500978|ref|ZP_00999213.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Oceanicola batsensis HTCC2597]
 gi|84391045|gb|EAQ03463.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Oceanicola batsensis HTCC2597]
          Length = 591

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 66/237 (27%), Gaps = 26/237 (10%)

Query: 1   MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE---- 46
           M K++         S  L AL  + + + H++  P+ A+   L     LL     E    
Sbjct: 346 MQKSLDVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAALLLRRNRPEEALS 405

Query: 47  --DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-- 102
               +  LI            + R        V+    +     ++E  +   +      
Sbjct: 406 SFQRIDDLISRMGAITRQLKSYARKGGEQFSPVNVGDAVNSALSMMEPQLRQRQVRITRA 465

Query: 103 --SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLAR 159
                 + +       ++L+NL   A  +        I V          +++ NG    
Sbjct: 466 VPDRRVQVMADRVRLEQVLINLMRNAIDATSSVENPAIDVILSVGETATITVRDNGTGI- 524

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    + +    +    D   +       + ++   RL     +    V    L 
Sbjct: 525 --ENLEDLFEPFYTTKRPGDGVGLGLAISSGIVNDFGGRLTARNAETGGAVFEIQLP 579


>gi|73748149|ref|YP_307388.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659865|emb|CAI82472.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 426

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            K +   +   M         + HD+ +P+ +I +S  +L  +  + +   L      S 
Sbjct: 185 EKKLRKRIQTEMKSRLEFTRIVVHDLKTPLTSIISSSGVLSNIAADGKYKALASNIYEST 244

Query: 61  IIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +     +                              +   +++      V   V     
Sbjct: 245 MNLNIRLDELLDMAQCEVRDPKLNKSRFNIKEMLEHIISIQQEICNTNHIVFNIVIAPEV 304

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       +IL NL   A       G ++I++   +N  +FS+  +G      E   
Sbjct: 305 TFIIADEDRLKQILDNLIDNAIKYSADSGIISINISHDQNNVLFSISDSGIGIEPGEIKN 364

Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  +    +    V      +  R+  E            + 
Sbjct: 365 IFKPYYRVENRQRKLQGLGLGLSIVRTYVKLHGGRIWVESECGKGTTFLFTIP 417


>gi|94986247|ref|YP_605611.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94556528|gb|ABF46442.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 770

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 59/230 (25%), Gaps = 23/230 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
           N+  + + ++  A + S   HD+  P+  + +  ELL            D+ +  ++ + 
Sbjct: 533 NLQRSNAELEQFAYVAS---HDLQEPLRTVGSYAELLARRYQGQLDPRADQYLAFMQDAV 589

Query: 58  MSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKID 110
                 ++ +               V     L    Q V     A    +          
Sbjct: 590 ERMRSLIQDLLGFARVGRMDTGLQPVQLEDVLRQAAQNVQGTLEATGATLSWDTPQTVWG 649

Query: 111 LSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                 ++  NL              +V ++      +    ++ NG     PE   ++ 
Sbjct: 650 HPGLLVQLFTNLIGNGLKFARAGVPPEVHVTAHQEGQQVRIKVQDNGIGI-APEYHERVF 708

Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         + I       +  ++   +    +          L 
Sbjct: 709 AIFQRLNRREAYPGNGIGLAICRKIVEQHGGSISLTSVPGEGTTFHLTLP 758


>gi|110633971|ref|YP_674179.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Mesorhizobium sp. BNC1]
 gi|110284955|gb|ABG63014.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Chelativorans sp. BNC1]
          Length = 377

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 69/242 (28%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51
           MA+ I   ++   +   V  L + + H+I +P+  I  + +LL+      +  +   + +
Sbjct: 117 MAEKIDRQMTHRGAARSVTGLAAMLAHEIKNPLSGIRGAAQLLEHVVSDEDRALARLITE 176

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                        +F          V+  + L  ++ + ++  A    +   +      +
Sbjct: 177 ETDRIVALVDRMEEFSDERPVDREPVNIHVVLDHVKAIAKNGFARHINIIEEYDPSLPPI 236

Query: 112 SRERAKILLNLFMVAHASLP-------------------RGGKVTISVQDSKNENIFSLK 152
              R +++     +   +                         V  + +       F + 
Sbjct: 237 FANRGQLVQVFLNLIKNASEAIGNASTGEIKLSTAFRPGIRFSVPGTRERVSLPMEFCVH 296

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG      +    I D  + +  +   +    V  +   +   +  +           L
Sbjct: 297 DNGPGV-PEDIQAIIFDPFITTKPNGSGLGLALVAKIVGAHGGVIECDSSS-RGTTFRVL 354

Query: 213 LE 214
           + 
Sbjct: 355 MP 356


>gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
          Length = 675

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 52/250 (20%), Gaps = 38/250 (15%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELL----DEVGIEDEV 49
            +     L      A   S         + H+I +PI AI    +LL             
Sbjct: 250 QRRDQQELEEAKRAAESASHAKDEFLANMSHEIRTPITAILGFSDLLIHDQRLQNEFPNW 309

Query: 50  MQLIRLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
            +  +    +    L                + +       ++ +  +  +  +      
Sbjct: 310 FESAQTVYRNGEHLLSLINDVLDLSKIEAGRLLIESIRCSPLEIVRDVCQLMSLKASEKD 369

Query: 96  VDKRVQV--SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---SKNENIFS 150
           +   V          +       ++L+NL   A    PRG                    
Sbjct: 370 LTLDVSFRTDIPVTAVTDPTRIKQVLINLVGNAVKFTPRGSVQITVDIHSSGHATMLAVE 429

Query: 151 LKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           +   G      +   ++                   +       +      ++       
Sbjct: 430 VTDTGIGMTSAQI-DRLFQPFTQADASTTRRFGGTGLGLVISKRIVEALGGQVSVVSQSG 488

Query: 205 HNVVLSALLE 214
                  LL 
Sbjct: 489 EGSTFRVLLP 498


>gi|37520808|ref|NP_924185.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211803|dbj|BAC89180.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 713

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 62/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55
           +A+       + +       + + H++ +P+  I    +LL         +   ++ I  
Sbjct: 470 LAEQARREAEAANRAKDEFLAVLSHELRTPLNPIIGFAQLLRRKSGLSAADYRALETIER 529

Query: 56  SSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +       +             MR+       +  +    +  +   +   +    ++  
Sbjct: 530 NGRLQAQLIDDVLDVSRIISGKMRVELRAVDLLPVVAAAIEAVRSPAELKGICLSGRLDD 589

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +       +++ NL   A    P GG+V I +       +  +  +G         
Sbjct: 590 GATAVADPTRMQQVVWNLLTNAIKFTPEGGRVVIDLCRGDRTLLIRVSDSGIGISPDFLP 649

Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                 +  DG          +    V  +   +   +  +             L 
Sbjct: 650 YVFERFRQADGTSTRKHSGLGLGLAIVRHIVELHGGAVSAQSDGVGQGTTFCVELP 705


>gi|326326124|ref|YP_004250934.1| putative sensor protein [Vibrio nigripulchritudo]
 gi|323669176|emb|CBJ93233.1| Putative sensor protein [Vibrio nigripulchritudo]
          Length = 688

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 25/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H+I +P+ AI   +++L     +     ++R+   SA 
Sbjct: 316 ARSEAEKANQAK--SQFLATMSHEIRTPLNAILGLIDVLLSKCTDKNNTDVLRMMESSAE 373

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +                    + +       V S           E  + +   +     
Sbjct: 374 LLLAIISDVLDLSKIESGRVELSVKSVNVRDVVSGNLQHYQLVANEKGLKLSLDLADDIP 433

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +    +   ++IL NL   A      G      ++      +  +   G          
Sbjct: 434 HQIHTDATRLSQILFNLVGNAVKFTEAGEIRVKVIRQPGQTLVIRVTDTGLGIDES-VLE 492

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++    +              +       LA      +  +         +  L 
Sbjct: 493 KVFKPFIQADGSITRRFGGSGLGLAISKQLAKLLGGDITVKSQRHQGSEFTLTLP 547


>gi|317478861|ref|ZP_07938012.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905037|gb|EFV26840.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 758

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDE 48
           +  +    + S +L        + L   + H+I +P+ AI    ++L            E
Sbjct: 518 LKDHEQELIESRELAEQAELKQSFLN-NMSHEIRTPLNAIVGFSDMLANEPEFSNEERQE 576

Query: 49  VMQLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
            + +I  ++   +  +             +   F        L  +     ++       
Sbjct: 577 FVDIINTNTKLLLKLVGDVLELSRIESGNLSFTFQRESVHRLLDDVYQTHSLLIRPPLQF 636

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGN 156
            +       +         ++L N    A+     G         S   E    ++  G 
Sbjct: 637 LKDFPPEDVQVNVDPMRLTQVLTNFLNNANKFTKGGSIRLGYCCPSGMSEVHLYVEDTGI 696

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E+          S       +     +L+  +   R+     +      + +L 
Sbjct: 697 GIPHSEQKMIFERFYKRSEFSQGVGLGLSICVLIVEKMGGRIELRSEEGRGSRFTVVLP 755


>gi|296501092|ref|YP_003662792.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296322144|gb|ADH05072.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 337

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + +       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 95  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 154

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       +     
Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQIRIPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++  E    +   G      + 
Sbjct: 215 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDL 274

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E            + K
Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 331


>gi|291570781|dbj|BAI93053.1| two-component hybrid histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 1235

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     L +  L +   + + H+I +P+  +     LL +  ++ +    ++    SA
Sbjct: 561 LVKAREAALENSRLKSQFLANMSHEIRTPMNGVLGMTGLLLKTELDTKQKDFVQAIRTSA 620

Query: 61  IIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKR---------VQVSW 104
              L  +     ++          D    L +  + I D +A             V  + 
Sbjct: 621 NHLLAIINDILDFSKLEAQEIELEDLDFDLEECLENIIDLLAAQAENKGIELAAIVDRNV 680

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLA 158
                       ++LLNL        P      R  +      ++     + ++  G   
Sbjct: 681 PRYLRGDPGRLRQVLLNLMSNGIKFTPAGEVTLRVSRPPNYDINAPLILRYEVQDTGIGI 740

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             PE   ++ +                 +       L       +  E +          
Sbjct: 741 -PPESHGRLFEAFSQVDASTTRKFGGTGLGLVICKQLVDVMGGEIGLESVVGQGSNFWFT 799

Query: 213 LE 214
           L 
Sbjct: 800 LP 801


>gi|284053861|ref|ZP_06384071.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira platensis str. Paraca]
 gi|291570304|dbj|BAI92576.1| two-component sensor histidine kinase [Arthrospira platensis
           NIES-39]
          Length = 368

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           L S + H++ +PI  +   LE + E       ++ Q +   +      +  ++       
Sbjct: 147 LISDLTHELRTPITVVRGYLEEMAEGRISPSPDIYQQLTKETKRLERLINNLQELSKVES 206

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---DLSRERAKILLNLF 123
                         +    +++  +  +     +++ ++ E            +IL+NL 
Sbjct: 207 GYLPINPQPLALRPLLESLVQRFSDQLLEEGPMLELDFSEELPLALADVDRTEQILVNLL 266

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVES--TIDS 178
             A      G                 +   G        P  F +    +         
Sbjct: 267 GNAIRYTKHGLIKIEVYTH-GGYLFVDVSDTGIGISEADLPHVFERFWRADRSRSRNYGG 325

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I       L       +            +  L 
Sbjct: 326 TGIGLAITRRLVELQGGEIFVSSQLGKGSTFTFSLP 361


>gi|285017626|ref|YP_003375337.1| two-component system sensor-response regulator hybrid protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472844|emb|CBA15349.1| putative two-component system sensor-response regulator hybrid
           protein [Xanthomonas albilineans]
          Length = 504

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVM-----QLIRLSSMS 59
                ++ +ALL + + HD+ + +  +    EL+       +   +     +  R     
Sbjct: 144 MRAQRLESLALLAAGLSHDLRNILQPLLIVPELMVGRSDDPQLRHLADVIAECGRRGHEM 203

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKIDLSRERA 116
           A   L F+R +   +  V        ++ +++  +     +QV     +        E  
Sbjct: 204 AESMLSFVRGSRTPSQRVCIAELFQAVQMLLKSSLPEGVALQVEVADASLSIEANYTELQ 263

Query: 117 KILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           + LLNL + A  ++P         +     + +++    ++ +G      E   ++    
Sbjct: 264 QCLLNLGLNAIQAMPNGGRLTFSAIQAIGTNGRDQVRILVRDSGMGM-DAETQARLFSPF 322

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  D   +       +       +  +           +L 
Sbjct: 323 FTTKPDGTGLGLISCKRIVEGYGGSIGVDSTPGEGTCFELMLP 365


>gi|229506132|ref|ZP_04395641.1| sensor protein TorS [Vibrio cholerae BX 330286]
 gi|229356483|gb|EEO21401.1| sensor protein TorS [Vibrio cholerae BX 330286]
          Length = 984

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 516

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +         +          +  E  I +   +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKAITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690


>gi|229074748|ref|ZP_04207768.1| hypothetical protein bcere0024_13040 [Bacillus cereus Rock4-18]
 gi|228708388|gb|EEL60541.1| hypothetical protein bcere0024_13040 [Bacillus cereus Rock4-18]
          Length = 423

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKHLLIPELDRA 245

Query: 61  IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITQFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSNELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L            +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNQ-AGTTFTISIP 409


>gi|297564622|ref|YP_003683594.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
 gi|296849071|gb|ADH62086.1| integral membrane sensor signal transduction histidine kinase
           [Meiothermus silvanus DSM 9946]
          Length = 365

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 61/237 (25%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRL 55
           +A++      +++        L   + H++ +P+  +    E L +     ++    I  
Sbjct: 122 LAQDFNRMAEALEKVEQSRVELIGSVAHELRTPLAGLQGYAEALADGVLPPEQAAHRIAH 181

Query: 56  SSMSAIIRLKFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +    ++ +          +         +       E+    F      +++    
Sbjct: 182 EVRAMRRLVEDLSLVSRVEAGAVEIRPQPLDPAEALRQAAERFELVFAEQGVALRLDVPP 241

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +  +  ++   L      A    P GG+V +      +   FS++  G     PE 
Sbjct: 242 RLPPVWADLERLQQVLSNLLANALRHTPSGGEVVLQAGLVPSGVCFSVRDTGPGI-PPEH 300

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +                 +       L       +               L 
Sbjct: 301 QARVFERFYRVDSARSRQDGGSGVGLTIAKGLVEAMGGTMGLRSEAGRGSTFWFTLP 357


>gi|307152177|ref|YP_003887561.1| histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982405|gb|ADN14286.1| histidine kinase [Cyanothece sp. PCC 7822]
          Length = 423

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 66/228 (28%), Gaps = 26/228 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
            ++       +   H++ +P+ AI  S+E++          + + +  I  ++       
Sbjct: 194 QNLK---QFTADASHELRNPLTAISTSIEVMLNHPERIHPKDVKKLAAIAKATEHMTRLT 250

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------------IDL 111
           + +       G +  +        + +    +   ++     ++             +  
Sbjct: 251 QDLLFLARTDGEIALVENPWQSISLNQILENLIDLLEPLAEDKEVKLNYEALTTVSVMGD 310

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             + +++  NL   A    P  G+VT+S+         S++  G      E    F +  
Sbjct: 311 PSQLSRLFSNLLQNAIQYTPPKGQVTLSLTKQNRLCYVSVQDTGIGIAPEELPFIFNRFW 370

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +    V  +A  +  ++               L 
Sbjct: 371 RADKARTRREGGSGLGLSIVAAIAQRHGGKITVSSEVGVGSCFKVQLP 418


>gi|197122464|ref|YP_002134415.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196172313|gb|ACG73286.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 618

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIH-NSLELLDEVGIEDEV---MQLIRLS 56
           M         +      L   + HD+ +P+ AI   +  LL    + D     +  IR +
Sbjct: 379 MRDEQRLR-QAQAFEQQLIGIVSHDLRNPLNAILLGASSLLAREDLSDRNVASIARIRSA 437

Query: 57  SMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106
           +  A   ++ +                   D       +   +   +      V+ +   
Sbjct: 438 AERAARLIRDLLDLTRARLGGGIPVQPRPADLRQVAQQVVDELEPSYPDRPISVEAAGDT 497

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                    A+++ NL   A     RG  V + +     E   S+   G         T 
Sbjct: 498 HGQWDPDRIAQVIGNLVTNALKYGARGTPVAVRIAAEDGEVRLSVHNQGTPIPAETVRTI 557

Query: 167 IVDGNVES-TIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              G   +         +  + V  +A  +  R+     ++     +  L +
Sbjct: 558 FEAGGRAAPDPTGRSVGLGLFIVERIADAHGGRVEVHSSEEDGTTFTVWLPR 609


>gi|153211921|ref|ZP_01947768.1| sensor protein TorS [Vibrio cholerae 1587]
 gi|124116997|gb|EAY35817.1| sensor protein TorS [Vibrio cholerae 1587]
          Length = 984

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   +                     +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690


>gi|153007232|ref|YP_001381557.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030805|gb|ABS28573.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 484

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 12/222 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +       +    L + I H++ +P+GA+     LL E          +       
Sbjct: 244 MRRALRARDEERE---TLLAGIAHEVRNPLGALDLFAGLLAEELQGRAQAPHVARIQSEL 300

Query: 61  IIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLS 112
               K +     Y          VD  I L ++  +           + V   GE     
Sbjct: 301 AALSKVVEEFLDYARARPPLREPVDLRIVLAEVADLAAPLAAQRQVSIAVEGEGEAKADR 360

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  + LLNL   A  + P   +V ++ + +  E    ++  G      E    +     
Sbjct: 361 EQLRRALLNLVRNAVEAAPAASEVEVAARVADGEAHIEVRDRGPGL-AAEARASLFRPFF 419

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +       +A  +   L  E  D    +    L 
Sbjct: 420 TTKEKGTGLGLALAKKVADAHGGTLSLEQRDGGGTIARLALP 461


>gi|219847901|ref|YP_002462334.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219542160|gb|ACL23898.1| GAF sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 725

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 70/244 (28%), Gaps = 33/244 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            +      S  L       + H++ +P+ +I    E+L      D     + ++ +   +
Sbjct: 470 SDRTRERESDRLKDEFIGIVSHELRTPLTSILGYTEILLNRQDLDSESQREFLLTVSNEA 529

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +    + ++    G V           + +   +      V  ++ +        
Sbjct: 530 DRLHKMVKDLLDVSRLEAGVVKLNRWAVGLWQVIEELTLQLHTQLVQHKLLIDMRTPLPP 589

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVT-----------ISVQDSKNENIFSLKINGN 156
           +  +R    +I++NL   A    P G ++             +   +    + +++  G 
Sbjct: 590 VFADRDKVKQIIVNLLSNAIKYSPEGTEIQLIVRQAEASDLPAGHPAGQWMLITVQDQGI 649

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               PE   ++ +                 +  Y   LL   +  R+  +         S
Sbjct: 650 GI-EPEDQARLFERFHRVDNSNTRQKSGVGLGLYITRLLVELHGGRIWVQSTVGVGSSFS 708

Query: 211 ALLE 214
             L 
Sbjct: 709 FTLP 712


>gi|16262960|ref|NP_435753.1| sensor histidine kinase of two-component system [Sinorhizobium
           meliloti 1021]
 gi|14523609|gb|AAK65165.1| Sensory histidine kinase [Sinorhizobium meliloti 1021]
          Length = 633

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 65/223 (29%), Gaps = 24/223 (10%)

Query: 15  VALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLI------------RLSSM 58
              L + I H++  P+GAI  + E    +L+    + +++Q I             +   
Sbjct: 407 AGALSASIAHELNQPLGAIRINAETAALMLERPNPDLKLIQQILADIRDDDQRAGDIIDR 466

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-EKIDLSRERAK 117
              +  K   + +      D +     I         V      S  G           +
Sbjct: 467 MRGLLRKRSEIDWQEFDLNDVVRSAIHILHPEAQRRDVTVSSVASAQGLPVRADRVHVQQ 526

Query: 118 ILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           ++LNL + A  ++       R      ++ +   +   S+   G+     +    I D  
Sbjct: 527 VILNLAINAMDAMLQAPTAERNLMFQTAMVERNEKVEVSISDTGSGIPSDKLSN-IFDAF 585

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +      ++      +L  +       V   +L 
Sbjct: 586 YTTKPTGTGLGLSIARVIIEIYGGKLWADNRPQGGAVFRFVLP 628


>gi|298387970|ref|ZP_06997518.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_14]
 gi|298259236|gb|EFI02112.1| two-component sensor histidine kinase [Bacteroides sp. 1_1_14]
          Length = 482

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGELNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +   +     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGARQEGDMIDLYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|239907626|ref|YP_002954367.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797492|dbj|BAH76481.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 988

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 61/245 (24%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K   F L +    A           + + H+I +P+  I   L+LL+    + E  + I
Sbjct: 580 RKQEEFELENAKRAAESSNKAKSEFLANMSHEIRTPLNGIMGMLQLLESTDTDHEQSEYI 639

Query: 54  RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
            ++  S                       +         +   +    I ++    I + 
Sbjct: 640 DIALSSCRNLTRLISDILDLSRIEHGNITLENHGFNISHLTEEVINTFITELSSKEIELS 699

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKIN 154
             ++ +        S    +I+ N+F  +      G          Q         +   
Sbjct: 700 TSIEKNIPEIVYGDSGRLRQIIFNIFGNSIKFTSSGRIFINIDSLIQRQTIYLFIEVSDT 759

Query: 155 GNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      +     V      G++        +    V  L       +  E   D     
Sbjct: 760 GIGIPEDKLDEIFVPFTQADGSLTRKYGGVGLGLSIVKKLLIAMGGTITVESNIDKGTTT 819

Query: 210 SALLE 214
              + 
Sbjct: 820 CIAIP 824


>gi|218128661|ref|ZP_03457465.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697]
 gi|217989116|gb|EEC55431.1| hypothetical protein BACEGG_00232 [Bacteroides eggerthii DSM 20697]
          Length = 1348

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 20/231 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + K     +S M +   +   I H++ +P+  I   L+ L E        + +     + 
Sbjct: 819  LDKEKQEEISQMKIRFYI--DISHELRTPLTLIVAPLQELIERIKGHWEHEKLSYIQRNT 876

Query: 61   IIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
               L  +     Y         +  +      + +       +   +           ++
Sbjct: 877  NRLLHLVNQLMDYRRAELGIFELRPVYANAYKKVLNCFLNYENLSKRKDIDYNLYTELQD 936

Query: 115  RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
               +    +           A     +G  +T+ +    N  +  +   G      EK  
Sbjct: 937  EELLFDETYLDLIVNNLLSNAFKYTEKGECITVRLYKEDNNLVLQVIDTGVGI-PAEKQK 995

Query: 166  QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +   +  S  +   I    V  L   +   +  E         S  + 
Sbjct: 996  KIFERFYQAESGHEGSGIGLSLVQRLVELHHGHITLESKVGEGSTFSIYIP 1046


>gi|126729800|ref|ZP_01745613.1| sensory box sensor histidine kianse/response regulator [Sagittula
           stellata E-37]
 gi|126709919|gb|EBA08972.1| sensory box sensor histidine kianse/response regulator [Sagittula
           stellata E-37]
          Length = 765

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 70/236 (29%), Gaps = 31/236 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62
           + S  + A+  L   + HD  + + AI    +LL    D+   +   +  I  ++  A  
Sbjct: 387 VQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDPDYGDLVQINQNANRAAA 446

Query: 63  RLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            +  +    R        +D    L D+  ++   +    R+ +        +  +R ++
Sbjct: 447 LVGQLLAFSRKQTMQPEVLDLRDTLSDLAHLLNRLVGEKVRLTLRHDPALPPVRGDRRQL 506

Query: 119 LLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARF 160
              +      A  ++P                  K   +V          +   G     
Sbjct: 507 EQVMMNLVVNARDAMPEGGEILVETERRLLREPLKRDRAVVAPGTYVSVRVIDEGVGI-P 565

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +K  ++ +    +    +   +    V  +  +    +  + +       + +L 
Sbjct: 566 ADKLQKVFEPFFTTKRTGEGTGLGLSTVYGIVKQTGGFIFVDSVVGQGTCFTLMLP 621


>gi|167621563|ref|YP_001672071.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167351686|gb|ABZ74412.1| PAS/PAC sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 524

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 58/234 (24%), Gaps = 28/234 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
           AK+     +     +   + + H++ +P+ AI    ELL  E  +  +    +     ++
Sbjct: 133 AKDRAEAGARSK--SEFLANMSHELRTPLTAIIGFAELLAREGSLAPQERHWLARIEDAS 190

Query: 61  IIRLKFMRLAFGYTGSVD--------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 +     ++   +               +     +     +   V   + V    
Sbjct: 191 KALHSIVNDVLDFSKLEEGAVELESEPFGLRKLVEDTVALLADQAERKGVGLAIFVDDGL 250

Query: 107 EK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160
                  +    +ILLNL   A      GG      +D       +  F++   G     
Sbjct: 251 CDGLRGDTGRLRQILLNLICNAVKFTNHGGVTIRVSEDVGAGGPPQVRFAISDTGIGIPD 310

Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                         G+V        +       L       +  E         
Sbjct: 311 AALDQVFQRFVQADGSVSREFGGTGLGLAICRRLVELMGGEIGVESRVGSGSTF 364


>gi|332702845|ref|ZP_08422933.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552994|gb|EGJ50038.1| GAF sensor hybrid histidine kinase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 562

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 55/239 (23%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSM 58
           +       +++    +   + + H+I +P+ AI    EL +    +   E  +LIR S  
Sbjct: 175 LESQKALAVAATRAKSEFLANMSHEIRTPLNAILGMAELAERRCPQHVKEHFKLIRQSGR 234

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
           + +  +                          L  +   +           +  V  +  
Sbjct: 235 ALLDIINDILDLSRIEAGRFAPQRKPFQPREALDSVLGPMSMIAEEKGLALNLAVSPTVP 294

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-------VQDSKNENIFSLKINGNLA 158
              +       ++L NL   A     RG                      FS++  G   
Sbjct: 295 VWLVGDEGRLRQVLTNLLGNALKFTERGRIELHVAREPSDLQHPEAVRLHFSVRDTGIGI 354

Query: 159 RFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +       +              +       L      R+  +            
Sbjct: 355 PAERQQAIFQSFSQAEASAHAKYGGTGLGLTISKELVERMGGRIWVDSEPGLGSTFHFT 413


>gi|323484204|ref|ZP_08089573.1| histidine kinase [Clostridium symbiosum WAL-14163]
 gi|323402446|gb|EGA94775.1| histidine kinase [Clostridium symbiosum WAL-14163]
          Length = 466

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           M++N+   L  ++    +     S   H++ +PI +I   +ELL+           + ++
Sbjct: 224 MSRNVKEYLERLEQEKQIRQEFFSNASHELKTPITSIRGYVELLESGMALNEETTHDFLK 283

Query: 52  LIRLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            I+  +M     +  + +                  + +    +  +          +  
Sbjct: 284 RIKKEAMRMTSLVDDILMISRLESRGAKTEIVTIQVADLLEETVSSLATQAAERGVVIHK 343

Query: 103 SWTGEKIDLS-RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +    I    R+  ++ +NL   A       G++ +  +    + + +++ +G      
Sbjct: 344 QFESFAIRADLRQMNELCMNLIGNAVKYNNTDGEIWVEARRENTDFVLAVRDSGVGI-PQ 402

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +    V  + +     +  E         +  L 
Sbjct: 403 ESLNRIFERFYRVDKGRSRKQGGTGLGLAIVKHVVNYYHGTVRVESEIGKGSTFTVRLP 461


>gi|312890080|ref|ZP_07749624.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
 gi|311297612|gb|EFQ74737.1| integral membrane sensor signal transduction histidine kinase
           [Mucilaginibacter paludis DSM 18603]
          Length = 352

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 62/218 (28%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIRLSSMSAIIRLKFMR------- 68
           S + H+  +P+ AI   +E L +   +  +    ++    +       +K +        
Sbjct: 121 SNVSHEFKTPLFAIQGYIEALQDDMDDPVMVKQFLEKASKNVDRLSYLVKDLDEISKLES 180

Query: 69  ----LAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAKILLNL 122
               + +      D +  + +  ++      +    + +            +  ++L+NL
Sbjct: 181 GEIPINYVKFKINDLIKEVMESLEMKAVQHKIKLSYKDKYDEPILVTADREKIRQVLVNL 240

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STID 177
              +       G  +I + D  ++ +  +  +G                         I 
Sbjct: 241 IDNSFKYGKENGNTSIRLYDLHDQVLVEVTDDGIGIEEKYLPRLFERFFRTDSSRSRQIG 300

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  +   ++  +     +         L+K
Sbjct: 301 GSGLGLAIVKHIIESHQQTINVRSTEGLGSTFGFTLQK 338


>gi|294664051|ref|ZP_06729455.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606178|gb|EFF49425.1| capsular synthesis regulatory two-component sensor kinase and
           response regulator hybrid transcription regulator
           protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 1092

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 57/238 (23%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     ++  + + H+I +P+      LELL    +  E  + + +   S  
Sbjct: 502 AKQTADEANRAK--SIFLAIVSHEIRTPLHGAMGHLELLARSPLGFEQAEWVDMIRRSFD 559

Query: 62  IRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             L                  +         V           ++++ +A          
Sbjct: 560 ALLSLVNDLLDSTKLEANALKINPMPMSPNEVAERCARSFGASILQNDVAFYCMTDPDLD 619

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           G      +  A+IL NL   A               +  Q       F +   G      
Sbjct: 620 GVVEGDDQRLAQILQNLLGNAVKFTERGSIMISSRCLKQQGDTIWARFEVADTGIGIPAS 679

Query: 162 EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            ++        +  +    L+     R+          V    L 
Sbjct: 680 MQSAIFKPLAQADDSISRRFGGTGLGLFLCRNLSRLMGGRISVSSEPGKGSVFRVDLP 737


>gi|261250586|ref|ZP_05943161.1| nitrogen regulation protein NR(II) [Vibrio orientalis CIP 102891]
 gi|260939155|gb|EEX95142.1| nitrogen regulation protein NR(II) [Vibrio orientalis CIP 102891]
          Length = 348

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+    +  + +  ++    A
Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERTLPDPSLTEYTQIIIEQA 175

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +         G     +  + L  + Q+++        ++  +     ++  + 
Sbjct: 176 DRLRALVDRLLGPQKPGQKKQENLHLILEKVRQLVDLEANQSIDIERDYDPSLPEILMDA 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           A+I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 236 AQIEQALLNIVSNAGQILRAQDNGQITIRTRTVHQANIHGQRCKLAARIEIIDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V        +       L  +++ ++  E         +  L 
Sbjct: 295 ADLQDTLFYPMVSGREGGTGLGLSIAQNLIDQHQGKIDVESWPGR-TTFTIYLP 347


>gi|262042632|ref|ZP_06015788.1| sensor protein EvgS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|259040066|gb|EEW41181.1| sensor protein EvgS [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
          Length = 1080

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 61/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55
           + +     + +    +   + + H++ +P+ AI   LELL +  +     +         
Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNVSQRKEAIELAGST 642

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103
           +     +    + +    +G         D+ Q++                 +     + 
Sbjct: 643 AQTLLGLIGNILDIEKIESGKYQVTPQWSDVAQLVSQQCHTFDALAQQKGIDLHYHNALQ 702

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +   +IL NL   A         +     +   +++ E    +  +G    
Sbjct: 703 EGTMLWVDPQALRQILNNLIGNALKFTVEGAIQVSCRLMLANETQGELALMVSDSGCGIS 762

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    F +              +       L    + RL            +  L 
Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSRPGVGTTFTITLP 820


>gi|229068099|ref|ZP_04201406.1| hypothetical protein bcere0025_3150 [Bacillus cereus F65185]
 gi|229077703|ref|ZP_04210333.1| hypothetical protein bcere0023_4060 [Bacillus cereus Rock4-2]
 gi|228705644|gb|EEL58000.1| hypothetical protein bcere0023_4060 [Bacillus cereus Rock4-2]
 gi|228714913|gb|EEL66781.1| hypothetical protein bcere0025_3150 [Bacillus cereus F65185]
          Length = 369

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D+L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCNLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHICAYQKTQGHLCISVEDQGCGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367


>gi|291287871|ref|YP_003504687.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290885031|gb|ADD68731.1| integral membrane sensor signal transduction histidine kinase
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 360

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 68/214 (31%), Gaps = 11/214 (5%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
            +  +  L + I H+I +P+ AI + + L+      D+V+ ++          ++     
Sbjct: 147 RLKAIGQLSAGIAHEIRNPLAAIKSGISLIKSGKGNDQVIDILSTEINHLDDFIRRFLQY 206

Query: 71  FGYTGSVDSLIGLGD---------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             +         L                   + ++  +                + L+N
Sbjct: 207 ARFGSEEKVTFELEQLVSELTELLNLASSRQKVIINYNIPDITGVTLTGDKNAIKQALVN 266

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
           + +    +      + IS++   +E IF++  NG      E   +I +    +      +
Sbjct: 267 IAINGIEACEGEAVLEISLEIKDSEVIFNITDNGKGL-DEELTGKIFEPFFTTKDMGTGL 325

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +A ++   L  +  +      S LL +
Sbjct: 326 GLALASKIAQQHGGSLNVKNQE-RGCTFSMLLSR 358


>gi|152971997|ref|YP_001337143.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150956846|gb|ABR78876.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 1080

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 60/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55
           + +     + +    +   + + H++ +P+ AI   LELL +  +     +         
Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNVGQRKEAIELAGST 642

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103
           +     +    + +    +G         D+ Q++                 +     + 
Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQVTPQWSDVAQLVSQQCHTFDALAQQKGIDLHYHNALQ 702

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR 159
                    +   +IL NL   A      G            +++ E    +  +G    
Sbjct: 703 EGTMLWVDPQALRQILNNLIGNALKFTVEGAIQVSCRLTLANETQGELALMVSDSGCGIS 762

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    F +              +       L    + RL            +  L 
Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSRPGVGTTFTITLP 820


>gi|56696905|ref|YP_167267.1| sensory box sensor histidine kianse/response regulator [Ruegeria
           pomeroyi DSS-3]
 gi|56678642|gb|AAV95308.1| sensory box sensor histidine kianse/response regulator [Ruegeria
           pomeroyi DSS-3]
          Length = 768

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 76/236 (32%), Gaps = 31/236 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62
           + S  + A+  L   + HD  + + AI    +LL    D+   +   +  I  ++  A  
Sbjct: 390 VQSQKMQAVGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDPDYGDLVQINQNANRAAA 449

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRER 115
            +  +            ++ L D    +   +      +V+ T              R+ 
Sbjct: 450 LVSQLLAFSRKQTLRPEVLDLRDTLADLIHLLNRLVGEKVTLTLSHDPVLKSVRADKRQL 509

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKINGNLARF 160
            ++L+NL + A  ++P+GG++ I  +                        ++  G     
Sbjct: 510 EQVLMNLVVNARDAMPQGGEIRIETEVMTLDEPLERDRATLPIGEYVTVKVRDEGTGI-E 568

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P+K  +I +    +    +   +    V  +  +    +  + +       +  L 
Sbjct: 569 PDKLQKIFEPFYTTKRTGEGTGLGLSTVYGIVKQTGGFIFVDSVLGKGSEFTLYLP 624


>gi|254229908|ref|ZP_04923311.1| conserved hypothetical protein [Vibrio sp. Ex25]
 gi|151937544|gb|EDN56399.1| conserved hypothetical protein [Vibrio sp. Ex25]
          Length = 341

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L  L  + + I H++ +P+ AI +  E   L  +    + V   +  
Sbjct: 97  LRLTQDELVQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLQKEKYERVEDNLTR 156

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103
            S          +    +                +   +    +  +             
Sbjct: 157 ISALTDRMANISQQLRSFAKKTSGNELAQSRLFPVIASVKELMKPALKSARVTLETQVPE 216

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E      +  ++L+NL   A  +L       +       +        +  NG    
Sbjct: 217 HDVEVQINIIQLEQVLVNLLTNAIEALKEQQDKQVQLSIEQDEHAGLVWIHVDDNGPGLG 276

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + +  +   +       +      RL  +  +      S  L 
Sbjct: 277 DFSLSD-LCEPFLTTKQNGLGLGLSISQQILASMNGRLCAQNREQGGARFSLCLP 330


>gi|329925248|ref|ZP_08280191.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328940081|gb|EGG36414.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 621

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 63/223 (28%), Gaps = 10/223 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLI 53
           M  N       M++++ L + + H++ +P+      L+LL       +   ++  +++L 
Sbjct: 396 MFNNELQRSEKMEIISELAASVAHEVRNPLQVTRGFLQLLTGKAQSTEREYLDLALVELD 455

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDL 111
           R S +               T    S         +         R+ V           
Sbjct: 456 RASGIITDFLTFAKPEFGKDTVLRISEEFKHIEGILGPLAHLQGGRITVDIPEDITIRGN 515

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           S +  +  +N+   +  +L   G V I     + +    +  NG     PE   ++ +  
Sbjct: 516 SSKFKQAFINIVKNSIEALGDDGLVHIRCYRQQGQVFIHVVDNGEGM-GPEVLARLGEPY 574

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +               L 
Sbjct: 575 FSNKTKGTGLGLMVTFRIIEAMDGDIYFTSKIGVGTDAVITLP 617


>gi|320354404|ref|YP_004195743.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320122906|gb|ADW18452.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1251

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 66/241 (27%), Gaps = 32/241 (13%)

Query: 5    ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
                + S  L A  +L   + HD  + +GAI    EL    +++       +Q I  ++ 
Sbjct: 867  QEQLMQSQKLEAVGILAGGVAHDFNNMLGAIIGYTELTLGTMEQTDPLRRNLQRILDAAE 926

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGDIE--QVIEDFIAVDKRVQVSW-----TGEKIDL 111
             +    + +            ++ L +     +      + + + ++W            
Sbjct: 927  RSAALTRQLLAFARKQTVAPVILDLNESVAGMLKMLRRLIGENITLAWLPGPLPCTVRID 986

Query: 112  SRERAKILLNLFMVAHAS----------------LPRGGKVTISVQDSKNENIFSLKING 155
              +  ++L NL + A  +                L        +        + ++  +G
Sbjct: 987  PTQLDQLLANLCVNARDAIGENIGTITIKTATVSLDETFCRAQASAAPGEYVLLAVSDDG 1046

Query: 156  NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                       I +    +        +    V  +  +N+  +            +  L
Sbjct: 1047 CGM-DKATMDHIFEPFFTTKELGQGTGLGLATVYGIVTQNEGFITAASEPGTGTTFTVHL 1105

Query: 214  E 214
             
Sbjct: 1106 P 1106


>gi|317497414|ref|ZP_07955736.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895334|gb|EFV17494.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 451

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +  +           + + H++ +P+  I +  E L E  + +E  +   +  +  
Sbjct: 220 MFERLEESFEKEQ---QFTADVSHELRTPVTVIISQCEYLIEDPVLEEEEKEEIMIILRQ 276

Query: 61  IIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             R+  +                       +     + +  +   +   +   V      
Sbjct: 277 ARRMSKLINEMLMIARGEMSESYDMEEVDLILLTEVIVEELREQAEKKKIQISVFSDRDV 336

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
           + +       ++++NL   A +     G + I  ++  +  I  +K +G      +    
Sbjct: 337 KMMGNHTLLLRMMMNLVQNAISYGKEHGHIDILWKEQGDMIIGEVKDDGIGIDQEDIPKI 396

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +    +   + +     +    V  +   +  ++  E  +           K
Sbjct: 397 WDRFYRVDKSRSRENGGTGLGLSMVHFIVAVHGGQIHVESKNGEGTSFIFQFPK 450


>gi|262402032|ref|ZP_06078597.1| nitrogen regulation protein NR(II) [Vibrio sp. RC586]
 gi|262352004|gb|EEZ01135.1| nitrogen regulation protein NR(II) [Vibrio sp. RC586]
          Length = 352

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  + +  ++    A
Sbjct: 117 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALTEYTQIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 176 DRLRSLVDRLLGPQRPGEKKWENLHLILEKVRQLVELETGENLTFERDYDPSLPNILMDT 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 236 DQIEQALLNIVSNAAQILANQPHGVITLRTRTVHQANIHGQRYKLAASIEIIDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +         +  L 
Sbjct: 295 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TTFTIYLP 347


>gi|238896576|ref|YP_002921319.1| putative sensor protein EvgS1 [Klebsiella pneumoniae NTUH-K2044]
 gi|238548901|dbj|BAH65252.1| putative sensor protein EvgS1 [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 1080

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55
           + +     + +    +   + + H++ +P+ AI   LELL +  +     +         
Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNVGQRKEAIELAGST 642

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103
           +     +    + +    +G         D+ Q++                 +     + 
Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQVTPQWSDVAQLVSQQCHTFDALAQQKGIDLHYHNALQ 702

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +   +IL NL   A         +         +++ E    +  +G    
Sbjct: 703 EGTMLWVDPQALRQILNNLIGNALKFTVEGAIQVSCRLTPANETQGELALMVSDSGCGIS 762

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    F +              +       L    + RL            +  L 
Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSRPGVGTTFTITLP 820


>gi|229172039|ref|ZP_04299604.1| hypothetical protein bcere0006_11530 [Bacillus cereus MM3]
 gi|228611382|gb|EEK68639.1| hypothetical protein bcere0006_11530 [Bacillus cereus MM3]
          Length = 466

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIHISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    ++K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIVITLRQIDDYCELNIKDTGIGIETEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    H   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESEKGHGTTVSIKLK 458


>gi|197104629|ref|YP_002130006.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196478049|gb|ACG77577.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 802

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 51/234 (21%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +      L  + + H+I +P+  +    + +    +     + + +   S  
Sbjct: 414 AKEEAEAANRAKSAFL--ATMSHEIRTPLNGVLGMAQAMAMDELSPAQRERLDVIRQSGE 471

Query: 62  IRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L  +                        + +  +      + +   +   + V+    
Sbjct: 472 SLLAILNDVLDLSKIEAGKLDLEEAEFDVEELVRTVHATFAAVAEAKGLGFEIAVARNAR 531

Query: 108 --KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +IL NL         RG       +       F ++  G      +   
Sbjct: 532 GLYRGDPIRVRQILWNLVSNGLKFTDRGAVEVRVRRAQGL-LAFEVRDTGIGIAPEQLAN 590

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +       LA      +  E         +  L 
Sbjct: 591 LFRKFEQADASTTRRFGGTGLGLAICRELAGLMGGEIAAESARGQGARFTVSLP 644


>gi|307153191|ref|YP_003888575.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306983419|gb|ADN15300.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1560

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 68/242 (28%), Gaps = 29/242 (11%)

Query: 2    AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51
             + I   L+       L +     + H+  +P+ +I    ELL+          + + + 
Sbjct: 1313 QQEIEKALAKEKELHKLKSQFIDIVSHEFRTPLTSILGYAELLERHSDKLTTEKKIKHLH 1372

Query: 52   LIRLSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             I+++       ++ +                 ++      D+ + I+  I     +   
Sbjct: 1373 NIQMAGQRLSDLIQDVLCISRAESGKLLYNPTLINVADFCQDLIEEIQIGIGQGYEILFK 1432

Query: 104  WTGEKIDLSRER--------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                +   S +           IL NL        P G +V +S+Q    + IF ++  G
Sbjct: 1433 QPNLRPHSSTDLIYLDEKLLRHILTNLLSNGIKYSPIGSRVELSLQYENQQVIFEIRDQG 1492

Query: 156  NLARFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  +    F      +    I    +    V    + +   +               
Sbjct: 1493 IGIPLEDHPKLFDSFYRASNVGNIPGTGLGLNIVQKYVNLHGGTIDFTSTVKVGTTFKVS 1552

Query: 213  LE 214
            L 
Sbjct: 1553 LP 1554


>gi|84385456|ref|ZP_00988487.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
 gi|84379436|gb|EAP96288.1| signal transduction histidine kinase [Vibrio splendidus 12B01]
          Length = 574

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 66/234 (28%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+ AI   ++ L    + DE   ++   S S+ 
Sbjct: 199 ARKDAERANKAK--SEFLAMMSHELRTPLNAIIGLIDTLKSTPLNDEQQSILLNMSTSSE 256

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +                    +   +       + +     +   +  +A+     +   
Sbjct: 257 LLLAIISDVLDFSKIESGCFSLAPQWSNVRDTVTFVLSEQKKTADDKGLALTVTSDIPEG 316

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL NL   A     R G V +S++  ++    +++  G      +  +
Sbjct: 317 ELHYIDPSRLAQILFNLIGNAIKFTER-GHVHVSIKYLQSSFYITVEDTGIGISSQQLSS 375

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +        +       L    + R+  E            L 
Sbjct: 376 LFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKGSKFEVQLP 429


>gi|91976349|ref|YP_569008.1| sensor histidine kinase [Rhodopseudomonas palustris BisB5]
 gi|91682805|gb|ABE39107.1| sensor histidine kinase [Rhodopseudomonas palustris BisB5]
          Length = 936

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 69/245 (28%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       +  L A+  L   + HD  + +  I  + E+L E   +   +  I     
Sbjct: 525 LKEAERRLHQAQKLEAIGQLTGGVAHDFNNMLTVISGTAEILIEELTDRPNLSNIAKMIE 584

Query: 59  S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R       +VD    + + EQ++   I    +V V    +   
Sbjct: 585 QAAERGADLTRQLLAFARKQPLQPRNVDVNAIVLETEQLLRATIGEHIQVDVRLEQDVDA 644

Query: 111 LSRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLK 152
              + +++   L      A  ++P  GK                           + ++ 
Sbjct: 645 ARIDPSQLSSALLNLAVNARDAMPISGKLLLETGGVVLDNDYAQQNPDVRPGRYVMIAVS 704

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      E   ++ +    +    +   +    V     ++   +     ++    + 
Sbjct: 705 DTGTGI-PAEMRDKVFEPFFTTKSLGNGTGLGLSIVYGFVKQSGGHVKIYSEENQGTTIK 763

Query: 211 ALLEK 215
             L +
Sbjct: 764 LYLPR 768


>gi|326797201|ref|YP_004315021.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
 gi|326547965|gb|ADZ93185.1| multi-sensor hybrid histidine kinase [Marinomonas mediterranea
           MMB-1]
          Length = 846

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 67/231 (29%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           ++       M+++  L   + HD  + + AI  +L+LL +        +           
Sbjct: 465 ESQLRQAQKMEMLGQLTGGVAHDFNNLLAAIMGNLQLLSDSEPLSSDQRRYTERALAVSE 524

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            SS      L F R    +         +  +  ++E  +    +V+ S     +    +
Sbjct: 525 KSSNLVQRLLAFSRRQQLFPECTHIDDLIEGMLDLVEYSVGSHIQVKPSLNCPDVHCLID 584

Query: 115 RAKILLNLFM---VAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +++   L      + A++P         K               ++  G+     E   
Sbjct: 585 PSQLENALLNLSLNSAAAMPSGGTLTFSTKACTLPDSDVPAIRIKVEDTGDGI-PKEVLA 643

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +        +    +     ++   ++    +     +   L 
Sbjct: 644 RIFEPFFTTKPVGKGSGLGLSMIYGFVKQSGGDIIVTSEEGKWTKVCIFLP 694


>gi|260846023|ref|YP_003223801.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
 gi|257761170|dbj|BAI32667.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O103:H2 str. 12009]
          Length = 778

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLCFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|229010880|ref|ZP_04168077.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
 gi|228750554|gb|EEM00383.1| hypothetical protein bmyco0001_13350 [Bacillus mycoides DSM 2048]
          Length = 591

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 69/237 (29%), Gaps = 27/237 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           M +          +     + + H++ +P+  +    E + +  ++ +    + +++   
Sbjct: 355 MTEERRL----EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYD 410

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG 106
            ++                      + G VD    +  I  +        + ++ V +  
Sbjct: 411 ESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQS 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                + +     ++L NL   A      GG VT+ +    +   F ++ +G      + 
Sbjct: 471 PIEQYTFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDI 530

Query: 164 ---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   T        +       +   +  ++    +       S  L 
Sbjct: 531 PFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKISVSSVVGEGTTFSVYLP 587


>gi|224368211|ref|YP_002602374.1| two-component hybrid sensor and response regulator histidine kinase
           (Ntr family) [Desulfobacterium autotrophicum HRM2]
 gi|223690927|gb|ACN14210.1| two-component hybrid sensor and response regulator histidine kinase
           (Ntr family) [Desulfobacterium autotrophicum HRM2]
          Length = 473

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 73/224 (32%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           +        +  +  + + + H+I +P+G I +S ELL +     G    ++ +I   S+
Sbjct: 246 EEKLRRAEHLSAIGEMTAGVSHEIRNPLGIIKSSAELLKKKMEKLGTSTTIVDIIVEESL 305

Query: 59  SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +K                         +  IE +I++     +        + + 
Sbjct: 306 RLNNIIKDFLDYARPRNPDLHPCRIKEVLEKNIAAIEPLIQEKCLEIETRFNDNIPKIMA 365

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +    +  LN+ + A  ++  GG++ ISV    +  I   +  G      E   +I + 
Sbjct: 366 DAPMLYQAFLNVLLNAIQAMDDGGRIIISVFADNSNIIILFEDEGKGI-SEEALKKIWNP 424

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +   +   +         V +  ++ 
Sbjct: 425 FFTTKDMGTGLGLGIVKNIIESHDGEIDISNRASMGVQVEIVIP 468


>gi|218895391|ref|YP_002443802.1| putative sensor histidine kinase [Bacillus cereus G9842]
 gi|218542923|gb|ACK95317.1| putative sensor histidine kinase [Bacillus cereus G9842]
          Length = 337

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 66/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +       S +    L S I HDI +P+ +I   ++ L +        + E ++++ +
Sbjct: 95  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAVSEIEKQEYLKILYM 154

Query: 56  SSMSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S +    +  +                    S  +   L +    +       + +   
Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 215 STCPIIADHLSLMRIMSNLMKNAIYYGKDGKIVGVELLETDREYELHIWDKGPGIPKHDL 274

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  E       +    + K
Sbjct: 275 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVESTPWKRTIFGFSIPK 331


>gi|168701012|ref|ZP_02733289.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 659

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 60/242 (24%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
           A+     + S  L AL  L   I HD  + +  I    EL           +        
Sbjct: 277 ARARDQMIRSQRLEALGTLAGGIAHDFNNLLAGIFGFAELAQSADDLGAAREHCGQLVRV 336

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +       L F R        V     + ++  ++    +    ++V        +S
Sbjct: 337 ATRARELIAQVLAFARPQPDGREPVSLPAVVRELLPLMRASFSKGIAIEVRLAESGALVS 396

Query: 113 RER---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154
            +     + +LNL   A  ++PR                    +           ++   
Sbjct: 397 ADGGQLHQAVLNLCTNAAQAMPRGGRLSVRVEVVDLADPVPADLCPLSPGPHAKLTVADT 456

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     P+   +  +    +        +    V  +   ++  +               
Sbjct: 457 GTGM-TPDTLRRAFEPFFTTKPVGQGTGLGLSVVHGIVCAHRGAIRVTTEPGAGTTFEVY 515

Query: 213 LE 214
           L 
Sbjct: 516 LP 517


>gi|126643383|ref|YP_001086367.1| two-component sensor [Acinetobacter baumannii ATCC 17978]
          Length = 394

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 61/215 (28%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78
            I H++ +P+  +   +E   +    +   +       S   R+  +        +++  
Sbjct: 173 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 232

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 233 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 292

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 293 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 352

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L  +  ++     +A+  K
Sbjct: 353 LGLAIVKHVLMQHGAYLDVQSKENEGSTFTAVFPK 387


>gi|121585528|ref|ZP_01675324.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121725847|ref|ZP_01679147.1| sensor protein TorS [Vibrio cholerae V52]
 gi|147672464|ref|YP_001215487.1| sensor protein TorS [Vibrio cholerae O395]
 gi|153818582|ref|ZP_01971249.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|262168553|ref|ZP_06036249.1| sensor protein TorS [Vibrio cholerae RC27]
 gi|121550145|gb|EAX60159.1| tmao reductase sytem sensor tors [Vibrio cholerae 2740-80]
 gi|121631612|gb|EAX63980.1| sensor protein TorS [Vibrio cholerae V52]
 gi|126510865|gb|EAZ73459.1| sensor protein TorS [Vibrio cholerae NCTC 8457]
 gi|146314847|gb|ABQ19387.1| sensor protein TorS [Vibrio cholerae O395]
 gi|262023082|gb|EEY41787.1| sensor protein TorS [Vibrio cholerae RC27]
          Length = 984

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   ++                    +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690


>gi|291561658|emb|CBL40457.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 347

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 59/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + ++    +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQDQEEYVKKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G + + ++  K+  +F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPAKGTIMMFLKQEKDSVMFILEDEGPGIEDDVKTRIFDKFYQTDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|237794329|ref|YP_002861881.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|229262203|gb|ACQ53236.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 454

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + +++      +     L   L S I H+I +P+  + N+LE + +    + +E +  + 
Sbjct: 213 LRESVNILAEKLKYQDSLRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272

Query: 55  LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101
              +     L  + +            F      + +  +            I +   ++
Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQTIFLDELIADICSDFYAIAENKNIKLQYHIE 332

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A      GG+V I +  S    +  +K NG   +  
Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392

Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F ++  G+      + + I    V  +   +   +  E  +          +K
Sbjct: 393 DLPFIFERLYRGDKSRHQFEGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKIYFDK 450


>gi|256830393|ref|YP_003159121.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256579569|gb|ACU90705.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 902

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 65/247 (26%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L  +   A           + + H+I +PI  +   L+LL+   ++ E    I
Sbjct: 492 RKEAEEALLKLKDAAEAANQAKSEFLANMSHEIRTPINGVMGMLQLLETTPLDAEQASYI 551

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------D 97
            +++ +A    + +      +      + + +    I+D I                  +
Sbjct: 552 HMAAEAANRLTRLLTDILDLSRVEAGKMEIREAPFHIQDIIDSVTGLFAVTARNKGLILE 611

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLK 152
            R+     G  +       ++L NL   A     RG             +        + 
Sbjct: 612 CRLAPDMPGILLGDEMRIRQVLFNLVGNALKFTERGRVEMDISALSAKDEDTCRVHLCVT 671

Query: 153 INGNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G               + V+ +         +    V  L       +  E       
Sbjct: 672 DTGIGIAEDRLGEIFEPFRQVENSFTRNYQGAGLGLSIVHRLVALMAGTISIESAPGEGT 731

Query: 208 VLSALLE 214
            +  +L 
Sbjct: 732 SVHVVLP 738


>gi|189462413|ref|ZP_03011198.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
 gi|189430851|gb|EDU99835.1| hypothetical protein BACCOP_03100 [Bacteroides coprocola DSM 17136]
          Length = 1466

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 74/234 (31%), Gaps = 25/234 (10%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS 59
            +I   +S + L     + I H++ +P+  I   +E L           E + +I  ++  
Sbjct: 930  SIEQEISDIKLR--FFTNISHELRTPLTLITGPVEQLLNNKTIEDKAREQLLIIERNANR 987

Query: 60   AIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +  +  +              V     L  I Q++E+F  +     ++ +    +    
Sbjct: 988  MLRLVNQILDFRKIQNKKMKMHVQQFDLLPFIRQIMENFNYLANEQHINLSLNAPEHPVI 1047

Query: 115  RA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                     KI+ NL   A    P+   + + V +++     S+   G      +   ++
Sbjct: 1048 LWADIDKLEKIIFNLISNAFKYTPKEKNIIVKVTENEKIISISIIDQGIGMTKNQLK-RL 1106

Query: 168  VDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         T +S  I       L   +   +  E   +     +  L+K
Sbjct: 1107 FIRFETFSDQHIHTQESTGIGLSLTKELVEMHNGTITVESQPNEGSCFTVNLQK 1160


>gi|168182888|ref|ZP_02617552.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|182674042|gb|EDT86003.1| sensor histidine kinase [Clostridium botulinum Bf]
          Length = 454

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + +++      +     L   L S I H+I +P+  + N+LE + +    + +E +  + 
Sbjct: 213 LRESVNILAEKLKYQDSLRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272

Query: 55  LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101
              +     L  + +            F      + +  +            I +   ++
Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQTIFLDELIADICSDFYAIAENKNIKLQYHIE 332

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A      GG+V I +  S    +  +K NG   +  
Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392

Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F ++  G+      + + I    V  +   +   +  E  +          +K
Sbjct: 393 DLPFIFERLYRGDKSRHQFEGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKIYFDK 450


>gi|153955812|ref|YP_001396577.1| histidine kinase-related protein [Clostridium kluyveri DSM 555]
 gi|219856179|ref|YP_002473301.1| hypothetical protein CKR_2836 [Clostridium kluyveri NBRC 12016]
 gi|146348670|gb|EDK35206.1| Histidine kinase-related protein [Clostridium kluyveri DSM 555]
 gi|219569903|dbj|BAH07887.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 745

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 73/231 (31%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           +  N    ++   L     + + I HD  + +  I+ S +L++   +    +E  + I++
Sbjct: 505 LKNNQERLINQEKLALLGQMGASIVHDTRNFLTTINGSCQLIELYSDDVKINECAKRIKM 564

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGE 107
            +      +                + + D+   +++ +     +               
Sbjct: 565 DTDEINRIMSDFLTLAKPANIAVEEVSVYDLLSSVKNLLQTSSLIKGINIEFKFNHDERY 624

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEK 163
            +       +++LN+   A  ++    +        + +  NE    +  NG      E 
Sbjct: 625 LMCDQVRIRQVILNICKNAIEAMENVEQPVLKIQTDIDEFTNEIYVGITDNGAGI-PKEI 683

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +++      +  +   +       +  E+K R+  +   +     + +L 
Sbjct: 684 ISKLGTPFFTTKKNGTGLGLSSCFQIISEHKGRIEIKSELNVGTTFTIILP 734


>gi|108760079|ref|YP_635068.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463959|gb|ABF89144.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 588

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 57/218 (26%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           L + + HD+ +P+G +     LL              +    I+ ++      +  +   
Sbjct: 350 LLAVVSHDLKNPLGVVQLGAALLLRGAGAKPGGESVAKQATRIQDATERMSRLISDLLDW 409

Query: 71  FG-YTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                G +    G   +  +             A   R+ V +    + +  ++ ++L  
Sbjct: 410 GRLEAGGLPLEWGEHGVVGLLTEALDSIRPLAEAKRLRLSVEFPAAGVRVRCDKVRVLQV 469

Query: 122 LFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--I 176
           L      A      GG + +  +    E    ++  G+                      
Sbjct: 470 LGNLLGNAVKFTTAGGDLMLGARARGGEVSVHVRDTGSGITPDALPHIFDRYWQARDAAS 529

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       L   +   +  E       V +  L 
Sbjct: 530 RGTGLGLAIAKGLVEAHGGGIQAESTLGEGSVFTFTLP 567


>gi|322804610|emb|CBZ02162.1| two-component sensor histidine kinase [Clostridium botulinum H04402
           065]
          Length = 615

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            KNI     S     L+    S I H++ +P+  I  +++LLD      +   +D+ ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLDFYEKDVDYEKQDKYLKL 405

Query: 53  IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103
           I+ +    +  +  +         Y         +          V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      A      GG + ++++DS+      +K  G     
Sbjct: 466 TEMEERVIAVDTDKIERIILNLLSNAIKFTNPGGNIFVNIKDSEENVYVHIKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +   +               L 
Sbjct: 526 DKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTINSELGKGTEFIIKLP 584


>gi|326780366|ref|ZP_08239631.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           cf. griseus XylebKG-1]
 gi|326660699|gb|EGE45545.1| PAS/PAC sensor signal transduction histidine kinase [Streptomyces
           cf. griseus XylebKG-1]
          Length = 388

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 52/221 (23%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 160 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAGRVTRLIAELLD 219

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                          VD    +    Q +        R +V   G    L  +     ++
Sbjct: 220 ISRIDSGRLELRRQPVDVSAAVARHIQALITGGQAPDRFRVRARGPLPALWADPDKVDQV 279

Query: 119 LLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L NL   A                    D +     ++   G                  
Sbjct: 280 LGNLLENAVRHGEGTVTIEIAPAPAPGADDETGTAVTVSDEGPGIPEESMSRVFTRFWRG 339

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +  Y V  +   +   +  +           +L 
Sbjct: 340 SKRGGTGLGLYIVKGIVEAHGGTITVDRGPGGGAEFRFILP 380


>gi|288871335|ref|ZP_06117244.2| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
 gi|288863842|gb|EFC96140.1| sensory box histidine kinase/response regulator [Clostridium
           hathewayi DSM 13479]
          Length = 894

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 68/242 (28%), Gaps = 31/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           + K      S     +   S++ H+I +P+  I   +EL    +DE G     +  I  S
Sbjct: 361 LEKERAEAASRAK--SDFLSQMSHEIRTPLNGIMGMVELGKNHIDEPGRMRNCLDKITFS 418

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVS 103
           S   +      + ++   +G ++    L                Q I   I     ++  
Sbjct: 419 STHLLSLINDILDMSKIESGKIELHPELFDLGKLLRALTTVFHVQAINRQIDFQIFLRGE 478

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLA 158
            T   +  +    +IL NL   A    P          T+   D +    F +K  G   
Sbjct: 479 VTEYLVGDALRLNQILTNLLSNAVKFTPAQGSVNLNIETLRRDDHRIWLRFEVKDTGRGI 538

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             PE   +I +        +        +               +          V +  
Sbjct: 539 -APENIHRIFEPFTQENSGIARNYGGTGLGLPITRSFTEMMGGSITVSSEVGTGSVFTVD 597

Query: 213 LE 214
           L 
Sbjct: 598 LP 599


>gi|258507900|ref|YP_003170651.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|257147827|emb|CAR86800.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus GG]
 gi|259649227|dbj|BAI41389.1| two-component sensor kinase [Lactobacillus rhamnosus GG]
          Length = 555

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +       + H++ +P+ AI    E L     ++    D+ +++I   S      +
Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKNDPATLDKFLKIIFDESKRLTQLI 383

Query: 65  KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
             +         +           +         +     +   V ++   + +   R+ 
Sbjct: 384 NDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDLQVVTDERKL 443

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I+ NL   A       G VTI+ Q  +     ++   G      E   +I +      
Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETE-QARIFERFYRVD 502

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L      ++            +  L 
Sbjct: 503 KARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547


>gi|256829166|ref|YP_003157894.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578342|gb|ACU89478.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 912

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 76/231 (32%), Gaps = 20/231 (8%)

Query: 3   KNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           + I   L  +  L A+  L +   H+I +P+  I    +LL+    +++  + +   S  
Sbjct: 532 QQINLQLLQTERLAAVGQLAAGAAHEINNPLAIISARTQLLESRENDEKKRRDLHQISEQ 591

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110
                  ++   G+       +   DI  ++   I + + +  +     +          
Sbjct: 592 IERISSILQSLMGFARPNAPQVINLDINSLLLKIIGLVESIFQTHRIPIVQSLAPDLPLI 651

Query: 111 --LSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              + +  ++ LNL + A  ++ + G    V+ +          S++  G     PE  +
Sbjct: 652 LADANQLEQVFLNLVINAQHAMEKEGGVLTVSSAFMPDGKRISISVRDTGTGI-SPENLS 710

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +  +     +       +   +   +           +  +L 
Sbjct: 711 RIFDPFFSTKSEGKGTGLGLSTAYGIVTNHYGEIKVISTPGQGTEMIVVLP 761


>gi|225376456|ref|ZP_03753677.1| hypothetical protein ROSEINA2194_02098 [Roseburia inulinivorans DSM
           16841]
 gi|225211832|gb|EEG94186.1| hypothetical protein ROSEINA2194_02098 [Roseburia inulinivorans DSM
           16841]
          Length = 470

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 60/216 (27%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR------------ 63
           S + HD  SP+ +I   +E + +      ++++ + +I   +                  
Sbjct: 249 SNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQEKYLNIILFETERLNKLTKSLLELNKFGS 308

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
              M     +  +      L   E +  +       +             +  ++L NL 
Sbjct: 309 HGVMLDVTDFDINQTIKTTLLTFEGICANKHIRFNLILSGEQLFVTADFSKIQQVLYNLI 368

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID--S 178
             A     +   +TI   +  ++   S+K  G         + + +    ++    D   
Sbjct: 369 DNAIKFSHQDSTITIETTEKNDKVFVSVKDTGIGIPKDSLKKIWERFYKTDLSRGKDKRG 428

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   +   +     +         L 
Sbjct: 429 TGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLP 464


>gi|206579898|ref|YP_002240949.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           342]
 gi|206568956|gb|ACI10732.1| sensor histidine kinase/response regulator [Klebsiella pneumoniae
           342]
          Length = 761

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 69/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L     M  V  L   + HD  + +  I  SLEL++    +   +     ++ 
Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R    +  +V     L ++ +++   +     +++           +
Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 506

Query: 115 RAKIL---LNLFMVAHASLPRGGKVTISVQDSKN----------ENIFSLKINGNLARFP 161
             ++    +NL M A  ++     V      ++                +  +G+     
Sbjct: 507 VGQLENALINLVMNARDAMAGCDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               ++ +    +        +    V     ++  R+  E        +   L +
Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621


>gi|223938141|ref|ZP_03630038.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223893185|gb|EEF59649.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 846

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----- 57
           +        M+ +  L   I HD+ + +  I  + EL+      +E  QLI +       
Sbjct: 454 EKQFLRAQRMESIGTLAGGIAHDLNNMLAPILMTCELMKMELPGEENQQLIAMIEGNAKR 513

Query: 58  --MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   L F R   G   S+     + +I  +I +      R+Q         LS + 
Sbjct: 514 GSELVKQVLSFARGVEGCYLSLQPRHLIREIASIIGETFPKSIRIQTRIAENLWPLSGDP 573

Query: 116 ---AKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNL 157
               +++LNL + A  ++P G                +         +  +  +   G  
Sbjct: 574 TQLHQVMLNLSLNARDAMPSGGDLTITAENIEIDAANRPMNLQAKPGSYVVIKVTDTGTG 633

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE   +I D    +    +   +     + +   +   +               L 
Sbjct: 634 I-APEMREKIFDPFFTTKEVGEGTGLGLSTALGIVKSHSGFINVYSEPGKGSTFEVWLP 691


>gi|241204893|ref|YP_002975989.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240858783|gb|ACS56450.1| PAS/PAC sensor hybrid histidine kinase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 867

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 73/246 (29%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  + A+  L   I HD  + + AI  S +  LL     +     LI + 
Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLIEIK 523

Query: 57  SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106
                        L F R        ++    +GD+  +++                   
Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P GG                   S   +++  +  +
Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLVEV 643

Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             NG     PE   +I +    +        +    V  +  ++   + PE         
Sbjct: 644 ADNGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702

Query: 210 SALLEK 215
              L +
Sbjct: 703 RVFLPR 708


>gi|153868974|ref|ZP_01998688.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
 gi|152074468|gb|EDN71320.1| two-component system sensory histidine kinase [Beggiatoa sp. PS]
          Length = 324

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 61/245 (24%), Gaps = 35/245 (14%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
            ++    + +       ++  + + H++ +P+ AI    E+L E   +     L+     
Sbjct: 68  EESQKARVQAEEANKAKSIFVANMTHELRTPLNAIIGYSEMLQEEAEDTGQKDLVPDLEK 127

Query: 54  ----------------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
                             S + A     ++      T   D +  +  + +   + + V+
Sbjct: 128 IASAGKHLLALINDVLDFSKVEAGKMGLYLEEFEINTMLQDVIGTIKQVIEKNNNHLIVN 187

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKIN 154
               +   G       +  + L NL   A+          +     Q  ++     +   
Sbjct: 188 YPKNL---GIMQSDVTKVRQCLFNLLSNANKFTETGTITLQANRYSQKGEDWISLKVSDT 244

Query: 155 GNLARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      +           D +         +               +  E         
Sbjct: 245 GIGMTADQIEKVFLAFTQADASTTRKYGGTGLGLVITKQFCQMMGGEVNVESQFGKGSTF 304

Query: 210 SALLE 214
           S  L 
Sbjct: 305 SINLP 309


>gi|189425740|ref|YP_001952917.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421999|gb|ACD96397.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 645

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 55/225 (24%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           +   S + H+I +P+  +    ELL    +  E  + +     SA               
Sbjct: 265 SQFLSNMSHEIRTPMSGVLGMTELLGFTELTPEQHEYLNDIKASADNLLSIINDILDLSK 324

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  +  A               + +++E  + ++ ++                +IL
Sbjct: 325 IEAGKIELEAANFSLQQCIRTTTAMQMPRILEKHLQIETKISPEIPEVVNGDQLRVKQIL 384

Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           LNL   A      G           ++       S+   G      E   +I D      
Sbjct: 385 LNLLSNAVKFTAHGQISIQASLLESRNEHLLVQISVSDTGVGI-AAEALDRIFDPFTQAD 443

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       LA      +  E  +         L 
Sbjct: 444 ASTSRKFGGTGLGLAICRQLAELMGGGIRVESEEGKGSRFHLRLP 488


>gi|116252386|ref|YP_768224.1| two-component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115257034|emb|CAK08128.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 867

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 73/246 (29%), Gaps = 33/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  + A+  L   I HD  + + AI  S +  LL     +     LI + 
Sbjct: 464 QKALEAQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLIEIK 523

Query: 57  SM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTG 106
                        L F R        ++    +GD+  +++                   
Sbjct: 524 RNANRAAVLVRQLLAFSRKQTMRPSVLNLTDVVGDLRMLVDRLLSGTNVKLDVQYGRDLW 583

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P GG                   S   +++  +  +
Sbjct: 584 PVKTDLSQFEQVLINLCVNARDAMPEGGTLTLRTRNLTAAEVSAFNYSYMPAEDMVLVEV 643

Query: 152 KINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             NG     PE   +I +    +        +    V  +  ++   + PE         
Sbjct: 644 ADNGTGI-APEIMDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIQPESEVGKGTTF 702

Query: 210 SALLEK 215
              L +
Sbjct: 703 RVFLPR 708


>gi|182439702|ref|YP_001827421.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|62896308|emb|CAH94295.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus]
 gi|178468218|dbj|BAG22738.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 388

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 52/221 (23%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 160 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAGRVTRLIAELLD 219

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                          VD    +    Q +        R +V   G    L  +     ++
Sbjct: 220 ISRIDSGRLELRRQPVDVSAAVARHIQALITGGQAPDRFRVRARGPLPALWADPDKVDQV 279

Query: 119 LLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L NL   A                    D +     ++   G                  
Sbjct: 280 LGNLLENAVRHGEGTVTIEIAPAPAPGADDETGTAVTVSDEGPGIPEESMSRVFTRFWRG 339

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +  Y V  +   +   +  +           +L 
Sbjct: 340 SKRGGTGLGLYIVKGIVEAHGGTITVDRGPGGGAEFRFILP 380


>gi|60683572|ref|YP_213716.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60495006|emb|CAH09824.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 557

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
           AK    N        L  + + H+I +P+ AI    ELL        + + ++++  +S 
Sbjct: 180 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAANTEEEKQKYLEILHTNSE 237

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105
             +  +                    VD  + L D+EQ+    I  +  VQ+       +
Sbjct: 238 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQLFRMKIGSNSPVQIITESGLPS 297

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A      G          +N   F +   G+     +   
Sbjct: 298 CMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS-ENGLRFYVSDTGSGISADKLEG 356

Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++S  + + +       + ++    +  E            L 
Sbjct: 357 VFDRFVRLQSDKNGNGLGLSICKTIVNKLGGEIGAESEVGKGSTFWFTLP 406


>gi|53715629|ref|YP_101621.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|253566558|ref|ZP_04844011.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|52218494|dbj|BAD51087.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|251944730|gb|EES85205.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|301165085|emb|CBW24653.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 557

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
           AK    N        L  + + H+I +P+ AI    ELL        + + ++++  +S 
Sbjct: 180 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAANTEEEKQKYLEILHTNSE 237

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WT 105
             +  +                    VD  + L D+EQ+    I  +  VQ+       +
Sbjct: 238 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQLFRMKIGSNSPVQIITEPGLPS 297

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A      G          +N   F +   G+     +   
Sbjct: 298 CMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS-ENGLRFYVSDTGSGISADKLEG 356

Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++S  + + +       + ++    +  E            L 
Sbjct: 357 VFDRFVRLQSDKNGNGLGLSICKTIVNKLGGEIGAESEVGKGSTFWFTLP 406


>gi|117923548|ref|YP_864165.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607304|gb|ABK42759.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1116

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 56/239 (23%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK            +   + + H+I +P+  I    ++L E  I+ E    +     +  
Sbjct: 725 AKEKAEAAYQAK--SEFLATMSHEIRTPMNVIIGLSDILMETPIDHEQRDHLLRLQKANK 782

Query: 62  IRLKFM-----------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
             L  +                 +        V+  + +  I    +      +  Q + 
Sbjct: 783 TLLDLVDSILDLSRIEANQISLKQEPLNLALMVEETMSMMSIVADQKGLRLESQVTQATD 842

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
               +       +IL+NL   A     +G         +           +K  G     
Sbjct: 843 DYWSLGDESRIRQILVNLIGNAVKFTEKGSIWVTLELFTDTLERTLVRLCVKDTGIGIGP 902

Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               T          +         +       +      ++  E       +    L 
Sbjct: 903 EHLETIFDKFTQVDSSYARRYSGTGLGLAITRRIIQLMGGKVWVESNPSQGSLFCVELP 961


>gi|325473732|gb|EGC76921.1| hypothetical protein HMPREF9353_02023 [Treponema denticola F0402]
          Length = 263

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 72/222 (32%), Gaps = 20/222 (9%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIR 63
            +L +L  + + + H+I +P+ AI   L+LL +              + I +        
Sbjct: 19  ENLASLTNVAAAVAHEIKNPLAAISIHLQLLKKNFTACNLSINQKAQKHIGVIEEEIERL 78

Query: 64  LKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            K +         +                 +   ++F      + +S++ E   +  + 
Sbjct: 79  NKIVVDFLFAVRPLKFEFVPVDINALLKNLYDTFFDEFNDSGIAISLSFSKELPKIQGDE 138

Query: 116 A---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +  +N+   A +++P GG + IS +   +  I ++  +G     PE   +I +   
Sbjct: 139 RFLRQAFMNVLTNAKSAMPNGGFLDISTKAVNDFIIITISDSGQGI-LPEDMHKIFEPYF 197

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  D   +       +  E+   +               L 
Sbjct: 198 TTKHDGTGLGLTMTYKVIKEHGGDINVYSDYGMGTSFKFSLP 239


>gi|284167284|ref|YP_003405562.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284016939|gb|ADB62889.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 883

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 54/231 (23%), Gaps = 23/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           M +     L      A       HD+  P+  + + L+LL+            E ++   
Sbjct: 652 MLEESNDRLEQFAYAA------SHDLQEPLRMVSSYLQLLERRYDDDLDEDGQEFLEFAV 705

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWTGE 107
             +      +  +          D    +          + +       +  +       
Sbjct: 706 DGADRMREMIDGLLKYSRVETRGDPFETVSLDDVLTEVCDDLQVMIQESNAEITTEDLPR 765

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---K 163
                 +  ++  NL   A               +   ++ + S++ NG      +    
Sbjct: 766 VEGDHGQLRQVFQNLLDNAIEYSGDDPPRIYIDAERDGDQWLVSVEDNGVGIDPEDTDRV 825

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F      +         I    V  +   +   +  E         S  L 
Sbjct: 826 FEVFQRLHARGEHAGTGIGLALVERIIERHGGDVWVESDPGQGSTFSFTLP 876


>gi|170744165|ref|YP_001772820.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168198439|gb|ACA20386.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 513

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV--------GIE 46
           + +     +    L A+  + S + H++  P+GA+ N       LLD+            
Sbjct: 264 LQELQAELVHVSRLSAMGEMASALAHELNQPLGAVSNYARGCRRLLDQAGGVPSRALDAI 323

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           D V +    +         F+               + +   +          V  S   
Sbjct: 324 DRVAEQALRAGQIIRRLRDFVARGETDKRIEPVSRLIEEASALALVGAREQGVVFRSRLD 383

Query: 107 EKID----LSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLAR 159
            ++        +  ++L+NL   A  ++    +  I+      +      ++   G    
Sbjct: 384 PQVRAVLADRVQIQQVLVNLIRNAREAMQPVPRREITVEARPAAPGMVEIAVADTGPGI- 442

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   ++    V +      +       +   +  RL            S  L 
Sbjct: 443 APEVADRLFQPFVTTKATGLGVGLSICRSIVEAHGGRLAVARNAAGGATFSLTLP 497


>gi|281355653|ref|ZP_06242147.1| integral membrane sensor signal transduction histidine kinase
           [Victivallis vadensis ATCC BAA-548]
 gi|281318533|gb|EFB02553.1| integral membrane sensor signal transduction histidine kinase
           [Victivallis vadensis ATCC BAA-548]
          Length = 546

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSSM 58
           M  N    L  +     +   I HD+ +PI  I    EL  L+     +    +    + 
Sbjct: 309 MTANTEKLLKELK---TISDNIAHDLRTPITRIRGKAELAVLNPEDSSELAGDVAEECAE 365

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGEK-- 108
              +    + +    +G         D+  +                  +      +   
Sbjct: 366 MLTMINTMLEITQTESGIAQDDFDDLDLTALTAAVLELFSTVAEDKGITLHQELPAQPLS 425

Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKF 164
                 +  ++L NL   A    P GG V++ ++   +E    +   G           F
Sbjct: 426 ACGNKVKYQRLLANLLDNAIKFTPSGGTVSVRLEPGDSEFTLRISDTGCGIPPEARSHIF 485

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +   ++  + +    V  +       +  E   +        L +
Sbjct: 486 ERFYRSDSSRSLPGNGLGLSLVKAIVSVAGGTIEVESEVNRGTTFLVTLPR 536


>gi|150388839|ref|YP_001318888.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149948701|gb|ABR47229.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 583

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS 57
              +   +    L     S I H++ +P+  I  SL+L    +          +  + + 
Sbjct: 310 RNELNEKMHFEKLRTDFFSNISHELRTPLNVILGSLQLQGLYIASENTSKYKKEYSKANK 369

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------- 109
                  + +RL            G  DI     D   + + + +S              
Sbjct: 370 RMKQNSYRLLRLVNNIIDITKIDSGFYDINLENYDINMLIREIVLSVEDYIENAGLQIEF 429

Query: 110 ----------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                         +  +I+LNL   A      GGK+ ++V+  +N    S++  G    
Sbjct: 430 KANTNQAIIACDPEKIERIMLNLLSNAIKFTEAGGKIVVTVKMVQNRIFMSVRDTGIGIP 489

Query: 160 FPEK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +            +   I    V LL   +K ++      +        L 
Sbjct: 490 QEKINSVFERFKQVGSYSHRKNEGSGIGLSLVRLLIEAHKGKVTVRSKLNEGTEFIIELP 549


>gi|150005262|ref|YP_001300006.1| two-component hybrid sensor kinase/response regulator [Bacteroides
           vulgatus ATCC 8482]
 gi|149933686|gb|ABR40384.1| two-component system sensor histidine kinase, with response
           regulator receiver domain [Bacteroides vulgatus ATCC
           8482]
          Length = 1045

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 67/228 (29%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     + +    L  + + H+I +P+ AI     +L     E E  + I +   +  
Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILAAAEEEQEKQEYINIIESNNT 732

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +  ++      D +  +  + +   +   +   VQ      
Sbjct: 733 LLLQLISDILDLSKIEAGTLEFSYCNIELNDIISEIESVTRYRTESNGIQLIVQKGLPSC 792

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   + R   +LN  +   +     G +T   +    E  F +K  G      +  +  
Sbjct: 793 LIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDKELYFYVKDTGCGIPADKVNSIF 852

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +      R+  E  +         + 
Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|147676382|ref|YP_001210597.1| signal transduction protein [Pelotomaculum thermopropionicum SI]
 gi|146272479|dbj|BAF58228.1| hypothetical signal transduction protein [Pelotomaculum
           thermopropionicum SI]
          Length = 414

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 17/219 (7%), Positives = 53/219 (24%), Gaps = 20/219 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS------MSAIIRLKFMRL 69
           + + + + HD+ +P+  I   +  L    +  +        +            +  +  
Sbjct: 181 SEMLAGLSHDLRTPLACIKGYITTLMREDVTWDPADEKEFMNIIVEETDHIESLINNLLD 240

Query: 70  AFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +  ++             +  ++     +            +                ++
Sbjct: 241 STTFSWKGEIELRKELISLPQIVNKVLRDPSYRIKNHQFTVLFPEGFPLVEADPVRIEQV 300

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A        ++ I  +    E + S+   G           F +     ++  
Sbjct: 301 LRNLVDNAVKYSMEDTQIVIKGEAMAGEIVVSIADQGIGIDSEHLKWLFEKFFRVGIKEN 360

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +  R+  E   +        L 
Sbjct: 361 NKGMGLGLPLARQILISHGGRIWAESKLNQGTTFYFTLP 399


>gi|16330584|ref|NP_441312.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653075|dbj|BAA17992.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 1261

 Score =  111 bits (278), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 59/242 (24%), Gaps = 27/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +       +  + A   + + H+I +P+ A+     L  +  +     + +     S 
Sbjct: 513 MKRAKELAEEASRIKADFLANMSHEIRTPMNAVIGMTHLALKTDLTPRQREYLHKIRFSG 572

Query: 61  IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
              L  +                 +   D    L ++  +I +            +  + 
Sbjct: 573 QHLLGVINDILDFSKIEAGKLPMESIDFDLDKVLDNVATLISEKATNKGLELLFDIDRNL 632

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160
               I       +IL+N    A     +G           +D       ++K  G   + 
Sbjct: 633 PRHFIGDPLRLGQILINYANNAVKFTEQGDITIVVRLQEYRDQDVVLYLAVKDTGIGIKP 692

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
                        D +         +       +A      +  E              L
Sbjct: 693 EHIANLFNSFQQADSSTTRNFGGTGLGLAICKRIAELMGGEVGVESEYGQGSTFWAKVCL 752

Query: 214 EK 215
           +K
Sbjct: 753 QK 754


>gi|294777096|ref|ZP_06742553.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|319643455|ref|ZP_07998078.1| sensor protein [Bacteroides sp. 3_1_40A]
 gi|294448965|gb|EFG17508.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|317384860|gb|EFV65816.1| sensor protein [Bacteroides sp. 3_1_40A]
          Length = 1045

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     + +    L  + + H+I +P+ AI     +L     E E  + I +   +  
Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILAAAEEEQEKQEYINIIESNNT 732

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +   +      D +  +  + +   +   +   VQ      
Sbjct: 733 LLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTESNGIQLIVQKGLPSC 792

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   + R   +LN  +   +     G +T   +    E  F +K  G      +  +  
Sbjct: 793 LIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDKELYFYVKDTGCGIPADKVNSIF 852

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +      R+  E  +         + 
Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|197117193|ref|YP_002137620.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086553|gb|ACH37824.1| sensor histidine kinase response regulator, PAS, PAS, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 953

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 66/244 (27%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            KN+   L  S  L A+  L   I HD  + +  I     LL+        + E++  I 
Sbjct: 569 RKNLEEQLRHSQKLEAVGHLAGGIAHDFNNLLTVIGGYASLLEMKMEPGDPKAEMVDQIV 628

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107
            S+  A    + +               L +I Q +  F+       ++ +         
Sbjct: 629 ASTDRAANLTRSLLAFSRKQEMHADDCSLNEIVQGVGKFLRRIIGEDITLSTTLGPEPLT 688

Query: 108 KIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLK 152
                 +  ++++NL   A  ++                     +          +  + 
Sbjct: 689 VFADKGQIEQVIINLATNARDAMENGGAFSISTGLTVFDGRFIQSRGFGKPGKFAVVKVS 748

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G          +I +    +        +    V  +  ++K  +  +         S
Sbjct: 749 DTGKGIDKG-VRGKIFEPFFTTKEFGKGTGLGLSIVYGIVKQHKGYIDVDGHPGKGTTFS 807

Query: 211 ALLE 214
             L 
Sbjct: 808 IYLP 811


>gi|85708496|ref|ZP_01039562.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
 gi|85690030|gb|EAQ30033.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. NAP1]
          Length = 421

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 17/218 (7%), Positives = 50/218 (22%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRL-A 70
             +   H++ +P+ AI   +E L       +     + + +I          +  +   +
Sbjct: 171 FVANASHELRTPLAAILGYVETLRESGDSLDSPTSQKFLGIIEREGQRLQNLISDLMSLS 230

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNL 122
                  D      ++  + E                             ++  +++ NL
Sbjct: 231 RVEAEKHDLPETRLELAALTERAACDAAGTNRIDRLKLEILSDPLVKGDLQQLEQVVRNL 290

Query: 123 FMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVD--GNVESTI 176
              A               +        ++   G+     +      +            
Sbjct: 291 VDNALKYGSADTSVTVRLDRSQDGMARIAVTDQGDGIAPEQLPHLTRRFYRTDPGRSRAS 350

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   ++ RL  +        +   L 
Sbjct: 351 GGTGLGLAIVKHIVERHRGRLNIDSDLGKGTRVVVRLP 388


>gi|153820784|ref|ZP_01973451.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229510010|ref|ZP_04399490.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229516429|ref|ZP_04405876.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229605664|ref|YP_002876368.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255746528|ref|ZP_05420475.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262158884|ref|ZP_06029997.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
 gi|126521827|gb|EAZ79050.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229346310|gb|EEO11281.1| sensor protein TorS [Vibrio cholerae RC9]
 gi|229352455|gb|EEO17395.1| sensor protein TorS [Vibrio cholerae B33]
 gi|229372150|gb|ACQ62572.1| sensor protein TorS [Vibrio cholerae MJ-1236]
 gi|255736282|gb|EET91680.1| sensor protein TorS [Vibrio cholera CIRS 101]
 gi|262029457|gb|EEY48108.1| sensor protein TorS [Vibrio cholerae INDRE 91/1]
          Length = 984

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   ++                    +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690


>gi|291527505|emb|CBK93091.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 479

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 58/218 (26%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK---FMRLA 70
             S + HD  SP+ +I   +E + +      ++D+ + +I   +       K    +   
Sbjct: 256 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLIDLNQF 315

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLN 121
             +   +D      +            K  +   +                 +  +IL N
Sbjct: 316 GHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLTGKELFVRGDMVKIQQILYN 375

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177
           L   A         + I       +   S+K +G         + + +    ++    D 
Sbjct: 376 LIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDSLSKIWERFYKSDLSRGKDK 435

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +   +     +         L 
Sbjct: 436 RGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLP 473


>gi|291524451|emb|CBK90038.1| Signal transduction histidine kinase [Eubacterium rectale DSM
           17629]
          Length = 479

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 58/218 (26%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK---FMRLA 70
             S + HD  SP+ +I   +E + +      ++D+ + +I   +       K    +   
Sbjct: 256 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLIDLNQF 315

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLN 121
             +   +D      +            K  +   +                 +  +IL N
Sbjct: 316 GHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLTGKELFVRGDMVKIQQILYN 375

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177
           L   A         + I       +   S+K +G         + + +    ++    D 
Sbjct: 376 LIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDSLSKIWERFYKSDLSRGKDK 435

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +   +     +         L 
Sbjct: 436 RGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLP 473


>gi|254883730|ref|ZP_05256440.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|254836523|gb|EET16832.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
          Length = 1045

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     + +    L  + + H+I +P+ AI     +L     E E  + I +   +  
Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILAAAEEEQEKQEYINIIESNNT 732

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +   +      D +  +  + +   +   +   VQ      
Sbjct: 733 LLLQLISDILDLSKIEAGTLEFCYSNVELNDIISEIESVTRYRTESNGIQLIVQKGLPSC 792

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   + R   +LN  +   +     G +T   +    E  F +K  G      +  +  
Sbjct: 793 LIRTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCDKELYFYVKDTGCGIPADKVNSIF 852

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +      R+  E  +         + 
Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGRIGVESEEGKGSTFWFTIP 900


>gi|238925263|ref|YP_002938780.1| sensory transduction histidine kinase [Eubacterium rectale ATCC
           33656]
 gi|238876939|gb|ACR76646.1| sensory transduction histidine kinase [Eubacterium rectale ATCC
           33656]
          Length = 479

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 58/218 (26%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK---FMRLA 70
             S + HD  SP+ +I   +E + +      ++D+ + +I   +       K    +   
Sbjct: 256 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLIDLNQF 315

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLN 121
             +   +D      +            K  +   +                 +  +IL N
Sbjct: 316 GHHGIHLDIADFDINTMIRTTILTFEGKCSEKGLSFDLLLTGKELFVRGDMVKIQQILYN 375

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177
           L   A         + I       +   S+K +G         + + +    ++    D 
Sbjct: 376 LIDNAVKFSNNDSSIKIETSIRNEKVFISVKDHGIGIPKDSLSKIWERFYKSDLSRGKDK 435

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +   +     +         L 
Sbjct: 436 RGTGLGLSIVKEIVQAHGENINVISTEGVGTEFIFTLP 473


>gi|224535763|ref|ZP_03676302.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522623|gb|EEF91728.1| hypothetical protein BACCELL_00627 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1031

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI     L+    +   ED +  +   + M   +    
Sbjct: 661 QSDKLKSAFLANMSHEIRTPLNAIVGFSGLMMYASDEEKEDYMQIINNNNEMLLKLISDI 720

Query: 67  MRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRER 115
           + L+    GSV+            +         A + ++Q+                  
Sbjct: 721 LDLSKLEAGSVELKYEEFDLTDYFNSMFASMKQRATNPKIQIVAVNPYQHCLVTLDRNRV 780

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           A+I+ N    A      G          +    F +K +G      +K            
Sbjct: 781 AQIITNYVTNAIKYTTEGTIEMGYEYR-EEGIYFYVKDSGIGIPDEKKNKVFHRFEKLDE 839

Query: 176 I-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +A      +  E       +  ALL 
Sbjct: 840 FAQGTGLGLSICKAIAEAMGGNVGFESEYGKGSLFWALLP 879


>gi|212694788|ref|ZP_03302916.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
 gi|212662642|gb|EEB23216.1| hypothetical protein BACDOR_04322 [Bacteroides dorei DSM 17855]
          Length = 1045

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     + +    L  + + H+I +P+ AI     +L     E E  + I +   +  
Sbjct: 675 AKDRAEESNRLKSAFL--ANMSHEIRTPLNAIIGFSNILATAEEEQEKQEYINIIESNNT 732

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +  ++      D L  +  + +   +   +           
Sbjct: 733 LLLQLISDILDLSKIEAGTLDFSYSNVELNDILSEIESVVRYRTETCGIQLIAHKGLPSC 792

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I   + R   +LN  +   +     G +T   +    E  F +K  G      +  +  
Sbjct: 793 PIKTEKNRLMQVLNNLLNNASKFTSQGSITFGYKLCGRELYFYVKDTGCGIPADKVNSIF 852

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S +    +       +       +  E  ++        + 
Sbjct: 853 GRFVKLNSFVQGTGLGLSICQTIVEHMGGHIGVESEEEKGSTFWFTIP 900


>gi|254437492|ref|ZP_05050986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198252938|gb|EDY77252.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 354

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 19/239 (7%), Positives = 64/239 (26%), Gaps = 35/239 (14%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRL 64
            + D+     + + H++ +P+ ++   +E L      +   +   + ++   +      +
Sbjct: 109 DANDMRRDFVANVSHELRTPLTSLLGFIETLRGPARDDSAAQTRFLGIMEQEARRMHSLV 168

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----------- 113
           + +       G              + D +    + +    G  +               
Sbjct: 169 QDLMSLNRVEGQERIKPTQQTDLCALMDDVLAAMKPRADTAGVSLMSDHPNEAVYVLADR 228

Query: 114 -ERAKILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +  +++ NL   A                R           ++    S+  +G+     
Sbjct: 229 DQMWQVIANLVENALKYGKKSGSNDGIVTVRLSAPQHEPALLQSGVRLSVIDHGDGIAAH 288

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++              +    +    V  + + ++ RL    +       +A+L 
Sbjct: 289 HL-ARLTQRFYRVDSHRNREVGGTGLGLAIVKHIINRHRGRLRISSVVGQGTEFTAVLP 346


>gi|182678613|ref|YP_001832759.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182634496|gb|ACB95270.1| multi-sensor signal transduction histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 583

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 73/249 (29%), Gaps = 37/249 (14%)

Query: 3   KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDE----VM 50
           + +   L +  + A           + + H++ +P+ AI    E+L +  +  +      
Sbjct: 297 RRVEQELDAARVAAETANQAKDRFLANMSHELRTPLNAIIGFSEMLADPQLCPQDPLKQR 356

Query: 51  QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           +   +   S    L                       +     +     ++       + 
Sbjct: 357 EYAAIIHSSGEHLLHVVNSILDMSKIHSGTFPLQPQPIVLAPLIASCCAMLRPQAEAKEI 416

Query: 100 VQVSWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLK 152
             V    +  D      +   +ILLNL   A    PR G+VT     V D  ++   +++
Sbjct: 417 ELVQIHADPWDEIVADQQACKQILLNLLSNAVKFTPRRGRVTIAVDCVVDCLDDIQIAVQ 476

Query: 153 INGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             G      +   ++ +   +         +   +    V  L   +   LL E   D  
Sbjct: 477 DTGIGISADDLT-RLGEPFFQAMVRQERPHEGTGLGLSIVRGLVELHGGTLLIESEPDQG 535

Query: 207 VVLSALLEK 215
             +   L +
Sbjct: 536 TSMIVRLPR 544


>gi|149190795|ref|ZP_01869060.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1]
 gi|148835357|gb|EDL52329.1| hypothetical protein VSAK1_07169 [Vibrio shilonii AK1]
          Length = 568

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 54/236 (22%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K+     +S        + I H++ +P+  +  S+ELL +  ++    +L    S S 
Sbjct: 186 LVKSKERAEASERSTREFLAMINHELRTPLNGLLGSVELLADTDLKGAQQELHSNLSQSG 245

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104
            +                  + L        +    L  I +       +   +      
Sbjct: 246 QLLRSIINDLLDFSKIDAGMLELIESTFKWTNLQSTLCSIFEHKAAEKQIGFTICADGFS 305

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I +NL   A      G               FS+   G         
Sbjct: 306 NKNFKGDLERITQIFVNLIGNAIKFTDEGSVKVTLTSQEGG-IGFSVTDTGIGISQT-AQ 363

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++    +          +   +       L       +               L 
Sbjct: 364 KKLFQPFIQADRSSSRNYEGTGLGLAICKRLVELMGGSISLTSELGQGTTFYGFLP 419


>gi|254225188|ref|ZP_04918801.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
 gi|125622287|gb|EAZ50608.1| tmao reductase sytem sensor tors [Vibrio cholerae V51]
          Length = 1020

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 493 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTATQQHYVQVINRSGR 552

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   +                     +    T
Sbjct: 553 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 612

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 613 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 672

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 673 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 726


>gi|119356709|ref|YP_911353.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354058|gb|ABL64929.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 590

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 62/221 (28%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF------ 66
             S + H++ +P+ +I    E L +  + D       +++I   S      +        
Sbjct: 367 FVSSVSHELRTPLTSIKGYTETLLDGAMHDPEHAAAFLRIILQESEQLTALVNDVLDLSR 426

Query: 67  --MRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        D    L    +++   I     ++ + +  E   +  + A + + + 
Sbjct: 427 IESGKIDYRFAPTDLRSILQKSSELVLPAIEKKKIKLDMQFQEELPLVYADAAYLEIAVR 486

Query: 124 MVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
            +   ++         +      S++  I  +  NG      +   +I +          
Sbjct: 487 NLLDNAVKYVEDTVGRIRVTAYKSESNVILEVHDNGLGIHPSDL-DRIFERFYRADKARS 545

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    V  +   +K  +      +   V    L 
Sbjct: 546 RQSGGTGLGLAIVKHIVLAHKGTIEVHSRLNQGSVFRMSLP 586


>gi|186687036|ref|YP_001870425.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
 gi|186469660|gb|ACC85457.1| putative PAS/PAC sensor protein [Nostoc punctiforme PCC 73102]
          Length = 1297

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 61/233 (26%), Gaps = 27/233 (11%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            +    +    L  L      H++ SP+  I   + LL    ++         +       
Sbjct: 922  DRANRIKDEFLAVL-----SHELRSPLNPILGWIRLLQNGKLDLPRQTEALKTIERNAKL 976

Query: 64   LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------------VDKRVQVSWTGEKID 110
               +         +           +   F+               + ++ +  +     
Sbjct: 977  QSQLIEDLLDISRIMQGKLTLTAAPISLTFVISAAIETVRLAAEAKNIQILLDLSTTVSY 1036

Query: 111  LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---- 163
            +S +     +++ NL   A    PRGG+V + ++         +   G            
Sbjct: 1037 VSGDANRLQQVVWNLLTNAVKFTPRGGQVIVELKQLDQLAQIRVSDTGKGIDPQFLPYVF 1096

Query: 164  -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
             + +  D           +    V  +   +   +  E   +D   + +  L 
Sbjct: 1097 EYFRQADSTTTRKFGGLGLGLAIVRQIVEMHGGTVKAESLGEDRGAIFTVQLP 1149


>gi|326799486|ref|YP_004317305.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
 gi|326550250|gb|ADZ78635.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
          Length = 579

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 57/235 (24%), Gaps = 27/235 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               L+     + + + + H+I +P+ AI   + L+    +  E  +++     S+ + +
Sbjct: 341 RAIALAEQK--SEMLATMSHEIRNPLTAITGFVYLMKNTPLTAEQNRMVSSIKASSDMLM 398

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------------TGE 107
             +      T        +  +          +    + +                    
Sbjct: 399 DTVNDILDMTKVESQQSEVLKVVSFTPFHEIKETVETMRFIAIKKNISLNFSFDGSQDEM 458

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPE 162
                    ++++NL   A      GG           +         +K +G      +
Sbjct: 459 VYGDPFRLKQVVINLLGNAIKYTDIGGVEVYCTMKKGEQDGMQELTVRIKDSGIGIPQEQ 518

Query: 163 KFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                    +  Y    L       +  E  +      S  + 
Sbjct: 519 QTKLFTKYYQAGKENARPGTGLGLYICYQLIKLQHGDIYVESEEGKGSTFSFRIP 573


>gi|312959223|ref|ZP_07773741.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
 gi|311286483|gb|EFQ65046.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
          Length = 344

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 63/206 (30%), Gaps = 13/206 (6%)

Query: 21  RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
            + H+I +P+G I  + +LL         +   ++ +          +            
Sbjct: 128 GLAHEIRNPLGIIKTATQLLHRRADLPDTDKRHLEYVISEVSRINDLITEFLDFAKPNPP 187

Query: 77  VDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHA 128
           + +L     + + I  F        +   Q+        +  +  ++          A  
Sbjct: 188 LRALQPARPLVEEILGFCAPELATHNIDAQIDDQAPGATIYADAKQLKQACLNLILNAID 247

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           ++P GG++T+ ++ +    + S+  +G      +   +I    V +      +    V  
Sbjct: 248 AMPDGGRLTVGIRTADGNTVISIADSGQGI-AADMIERIFTPFVTTKASGTGLGLAKVYS 306

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +   +      D     S  + 
Sbjct: 307 IMESHDGSIECASEKDAGATFSLYIP 332


>gi|284164195|ref|YP_003402474.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
 gi|284013850|gb|ADB59801.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
          Length = 1195

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 56/230 (24%), Gaps = 20/230 (8%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
             + +  +   ++  A   S   HD+  P+  + + L+L++      ++ +  + I  +  
Sbjct: 965  QRKLEESNERLEQFAYAAS---HDLQEPLRMVTSYLQLIENRYADELDADGREFIDFAVD 1021

Query: 59   SAIIRLKFMR---------LAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEK 108
             A    + +                  VD    L      +       D  +        
Sbjct: 1022 GAERMREMIEGLLAYSRVETRGDPFEPVDLEETLEAVRRDLELQIEESDAEITADSLPRV 1081

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPE---KF 164
                 +  ++  NL   A               +   +    S+   G      +    F
Sbjct: 1082 RGDPSQLRQVFQNLLSNAIEYSGPEPPRIHLEAERKGDRWRVSVTDEGIGIDPEDADRVF 1141

Query: 165  TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +     D   I       +   +   +  E         S  L 
Sbjct: 1142 EIFQRLHGREEHDGTGIGLALCQRIVERHGGEIRVESEPGEGSTFSVTLP 1191


>gi|228908953|ref|ZP_04072783.1| hypothetical protein bthur0013_31090 [Bacillus thuringiensis IBL
           200]
 gi|228850675|gb|EEM95499.1| hypothetical protein bthur0013_31090 [Bacillus thuringiensis IBL
           200]
          Length = 436

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSLRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQENHNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S+  +  +    V  +   +  ++  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSSTGNTGLGLSMVKWIVELHGGKITVESELGEGSTFTFKLP 431


>gi|228992748|ref|ZP_04152674.1| hypothetical protein bpmyx0001_34870 [Bacillus pseudomycoides DSM
           12442]
 gi|228767080|gb|EEM15717.1| hypothetical protein bpmyx0001_34870 [Bacillus pseudomycoides DSM
           12442]
          Length = 424

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 18/224 (8%), Positives = 65/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++++ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIISELAASVAHEVRNPLTVVRGFIQLLESTEDMKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++      + ++     +  I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNIVKNGIEAIQENKGYLKVTAIQKDDVIIVRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +            L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIITLP 418


>gi|218232217|ref|YP_002365187.1| sporulation kinase [Bacillus cereus B4264]
 gi|218160174|gb|ACK60166.1| sporulation kinase [Bacillus cereus B4264]
          Length = 408

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 243

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 303

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 362

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 363 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 406


>gi|91781650|ref|YP_556856.1| histidine kinase [Burkholderia xenovorans LB400]
 gi|91685604|gb|ABE28804.1| histidine kinase [Burkholderia xenovorans LB400]
          Length = 666

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 66/248 (26%), Gaps = 34/248 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGI--EDEVMQL 52
           +       + +  L AL  + + I H++  P+ A+    +    LL+        E ++ 
Sbjct: 404 LRAAHDELIQASKLAALGQMAAGITHELNQPLAALRGFSDNTRVLLERGDQVSARENLEA 463

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------- 99
           I   +         ++L  G      +   +    + +   +    +             
Sbjct: 464 IAALTERMGKITNQLKLFVGRARPRSARAPIVRALRNVVALLQKRLQGVEVELVLFDAQS 523

Query: 100 --------VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIF 149
                                    ++L+NL   A  +        IS++         F
Sbjct: 524 GTRAPLSLADDHPELVAHCDDLRLEQVLINLLGNALDATADINSPRISIEIEVADANLSF 583

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           ++  NG      +   ++ +    +        +       +A +    L+         
Sbjct: 584 AVSDNGPGI-ADDVLPRLFEPFFTTKEMGQGLGLGLAISSSIARDCGGSLVARNAPGGGA 642

Query: 208 VLSALLEK 215
           +    L +
Sbjct: 643 LFVLTLRR 650


>gi|30018601|ref|NP_830232.1| sporulation kinase [Bacillus cereus ATCC 14579]
 gi|296501171|ref|YP_003662871.1| sporulation kinase [Bacillus thuringiensis BMB171]
 gi|29894142|gb|AAP07433.1| Sporulation kinase [Bacillus cereus ATCC 14579]
 gi|296322223|gb|ADH05151.1| sporulation kinase [Bacillus thuringiensis BMB171]
          Length = 408

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 243

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 303

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 362

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 363 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 406


>gi|83953660|ref|ZP_00962381.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter
           sp. NAS-14.1]
 gi|83841605|gb|EAP80774.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter
           sp. NAS-14.1]
          Length = 347

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 16/241 (6%), Positives = 58/241 (24%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++I    ++  +     + + H++ +P+ A+   +E L      +    D  + ++   +
Sbjct: 103 QDITQVTNASQMRRDFVANVSHELRTPLTAMMGFIETLRGPARDDAPARDRFLGIMTGEA 162

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWT 105
                 +  +                    + +      +                    
Sbjct: 163 ERMNRLVGDLLSLSRVESDERVRPTDKVDLRYVLQSTMRNLNPLAVEANVTLVATMGDDP 222

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFSLKINGNLA 158
              +  + +  ++  NL          G  V                    +++ +G   
Sbjct: 223 LPLMGDTDQLLQVFTNLIENGIKYGGVGKDVEISVETTLRDPSLRGPAVRVTIRDHGPGI 282

Query: 159 RFPEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +    +      +    +    V  + + ++ RL            + +L
Sbjct: 283 DPVHLPRLTERFYRADSHRSRALGGTGLGLAIVKHILNRHRGRLKITSDLGDGARFTVIL 342

Query: 214 E 214
            
Sbjct: 343 P 343


>gi|284036959|ref|YP_003386889.1| histidine kinase [Spirosoma linguale DSM 74]
 gi|283816252|gb|ADB38090.1| histidine kinase [Spirosoma linguale DSM 74]
          Length = 906

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQ 51
           M +++      +           S + H+I +P+ +I    E+L      +  +  E + 
Sbjct: 663 MTQHLSLANERLKQSDEQKDDFVSTVTHEIRTPLTSIRALSEILHDQADMDESMRQEFLS 722

Query: 52  LIRLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            +   +      +             +       +        + ++ Q+  D     + 
Sbjct: 723 RVIRETERLSRLINQVLDLERYDSGRYHLSTERISMVDLVAEAVENVAQLARDKQVTLEI 782

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
                            ++L+NL   A    P   G VT+ +         +++ NG   
Sbjct: 783 CPTQAQPVVDGDRDRLMQVLINLLSNAIKFSPAGTGHVTVCLTIRDERVNLTVRDNGIGI 842

Query: 159 RFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             P+    I +   +             +       +   +  ++    +       +  
Sbjct: 843 -EPDVQQLIFEKFYQATNQTLRKPKGSGLGLAITKKIIALHNGQITVSSVPGEGAEFTCS 901

Query: 213 LE 214
           L 
Sbjct: 902 LP 903


>gi|262199968|ref|YP_003271177.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262083315|gb|ACY19284.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 532

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 65/242 (26%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----------DEVGIEDEV 49
            +     + S  L+A+  + + I H++ +P+ +I  + ELL           E  + +E 
Sbjct: 283 EERERELVRSERLIAVGKMSAVITHEVRNPLSSIGLNTELLTELVDEGFAEREDELAEEA 342

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----------K 98
             L    +               +       + +  ++Q+    +  +            
Sbjct: 343 RSLCAAITTEVDRLAAITEEYLQFARLPKPKLQVERVDQIARSLVDFEREQLALRGAELC 402

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLK 152
               +          +  + LLNL   A  ++              +  D        + 
Sbjct: 403 AELAAEDAAARVDDGQMRQALLNLVRNAADAVEAVGGGRVTVATRSTRDDEGEWVEIRVS 462

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G     PE   ++ +    +      +       +  E+   L  E   +        
Sbjct: 463 DTGAGI-APEVEPKLYEPFFSTKQGGTGLGLALTHQIIREHGGHLRVEAGPERGATFVIA 521

Query: 213 LE 214
           L 
Sbjct: 522 LP 523


>gi|149923393|ref|ZP_01911799.1| probable serine/threonine kinase protein with two-component sensor
            domain [Plesiocystis pacifica SIR-1]
 gi|149815751|gb|EDM75276.1| probable serine/threonine kinase protein with two-component sensor
            domain [Plesiocystis pacifica SIR-1]
          Length = 1896

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 68/247 (27%), Gaps = 35/247 (14%)

Query: 2    AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
             K +   +     ++ +  L S + H+I +PI  I N  EL+      +  + D   ++ 
Sbjct: 1639 RKALEAQVRQQQRLESIGTLASGVAHEINNPIQGIMNYAELIATRPQLDPMVLDFAREIG 1698

Query: 54   RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK 108
              +   + I    +  A   + +         I       V         +V      + 
Sbjct: 1699 AETERVSQIIRDMLTFARRDSEAEREWAAPKAIVASTLSLVHAIMRKSGMQVMSDLPSDL 1758

Query: 109  IDLSRERAKILLNLFM---VAHASL----------------PRGGKVTISVQDSKNENIF 149
             ++     +I   L      A  +L                    +V +  +  +    F
Sbjct: 1759 PEVYCRPQQIRQILVNLLTNARDALGELPAKTLDADNGLRRRIDLRVLVRERAEQRWLRF 1818

Query: 150  SLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             ++ +G     PE    I D    +        +       +A E+  +L          
Sbjct: 1819 EVEDHGPGM-PPEVQAHIFDPFFTTKSRDRGTGLGLAVSHGIAVEHGGKLEVTSELGAGT 1877

Query: 208  VLSALLE 214
                 L 
Sbjct: 1878 TFRLSLP 1884


>gi|172057054|ref|YP_001813514.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
 gi|171989575|gb|ACB60497.1| integral membrane sensor signal transduction histidine kinase
           [Exiguobacterium sibiricum 255-15]
          Length = 575

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 69/233 (29%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +++        + A   + + H++ +P+  +    E +     +      E   +I   S
Sbjct: 337 RDMTEAQQLEKMRADFVANVSHELRTPLVMLQGYSEAIVDGMTESDEATKEFASIIYDES 396

Query: 58  MSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107
                 +  +       A      ++ +  +   +++++ F  +    +VS+       +
Sbjct: 397 QRLSRLVNDLLDLARMEAGYQEKRIELIDAVPFAKRMVKKFKQMGLEKRVSFEVTGPDVQ 456

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
                 +  +++ NL   A      G       +D +     S+  +G+     +    F
Sbjct: 457 FEADPDQMDQVMTNLLGNALRYTEDGKIKIEITEDRET-ISLSVIDSGDGIPEEDVPFVF 515

Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +           I    V  +   +   +  E       V    L K
Sbjct: 516 DRFYKADKARTRGKTGTGIGLAIVANVVRSHDGEVQVESELGKGSVFRIQLPK 568


>gi|283852142|ref|ZP_06369416.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572532|gb|EFC20518.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 484

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN----SLELLDEVGIED------EV 49
            +     + S  L ++  L + + H + +P+  I      +LE L+             +
Sbjct: 242 ERRQDQLVQSKKLSSIGTLTAGVAHQLNNPLNNISTSSQIALEELETADPAFLKKLLGNI 301

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGE 107
            Q    +       L+F R+       V          +++    +   R+ +       
Sbjct: 302 HQETLRARDIVQGLLEFSRVREFSLRLVSLAELARRTVRLVSSQASSGVRLALDVPEDLS 361

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPEKFT 165
               +    + LLNL + A  ++   G+V          +E + ++   G      +   
Sbjct: 362 VPADASRLQEALLNLLINAIQAVGGQGEVRLAARRDPDADEAVITVSDTGPGI-PADIRG 420

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +  +     +    V  +  ++   +  E            L 
Sbjct: 421 RIFDPFYTTKEEGKGTGLGLSIVYGIVEKHAGSVTVESEPGQGAAFHIRLP 471


>gi|220922103|ref|YP_002497404.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
 gi|219946709|gb|ACL57101.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium nodulans ORS 2060]
          Length = 524

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 62/243 (25%), Gaps = 32/243 (13%)

Query: 2   AKNICFNLSSM--DLV--------ALLCSRICHDIISPIGAIHNSL----ELLDE----- 42
            +     L  +  +LV          + S + H+I  P+ AI + L     LL       
Sbjct: 271 RQRTETRLQELQSELVHMSRFTALGEMASTLAHEINQPLTAIASYLKGCRRLLQRMQGPE 330

Query: 43  ----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVD 97
                    +       +        +F+               + +   +         
Sbjct: 331 VPLLADAVGQAADQALRAGQVIRHLREFVARGESERHIEGLPKLIEEASALALVGAKERG 390

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-------QDSKNENIFS 150
            RV  ++  +   +  +R ++   L  +   ++    +            + ++      
Sbjct: 391 VRVTFAFDPDAPLVLADRIQVQQVLLNLIRNAIEAMQETPRRELVVRTRARPAEGLVEIV 450

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +   G     PE  +Q+    V +      +       +   +  ++  E          
Sbjct: 451 VSDTGTGI-APEIASQLFQPFVTTKARGMGVGLSICRTIVESHGGKIWVESRPGQGADFR 509

Query: 211 ALL 213
             L
Sbjct: 510 FTL 512


>gi|163735067|ref|ZP_02142503.1| multi-sensor hybrid histidine kinase [Roseobacter litoralis Och
           149]
 gi|161391525|gb|EDQ15858.1| multi-sensor hybrid histidine kinase [Roseobacter litoralis Och
           149]
          Length = 734

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LD--EVGIEDEVMQLIRLSS 57
           A+        ++ V LL   I HD  + +  I  S  L  LD  E       ++ I +++
Sbjct: 358 AREQVARAQKLEAVGLLAGGIAHDFNNILTTIVGSAHLATLDAPEGSDIAHEIEQIDIAA 417

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
             A   ++ +         +     LG I   +   +   K   ++     +        
Sbjct: 418 HRAQSLVRGLLTFARREPGIPRPTDLGVIITEVSRLLTAAKPPNITLDCTAVQDGMTVLG 477

Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTIS-------------VQDSKNENIFSLKINGNL 157
                 +I++NL   A  ++       +               Q S     F +  NG  
Sbjct: 478 DETHLHQIVMNLCRNAIEAIGGASGDIMVSARRMVDDLPEGLTQRSDGWVQFDVADNGPG 537

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    + D    +        +    V  L  E   ++            S  L 
Sbjct: 538 M-SAQTRRHLFDPFFTTKPLGKGSGLGLAVVFGLVEEMGGQIDVASQLGQGAKFSIFLP 595


>gi|83942440|ref|ZP_00954901.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter
           sp. EE-36]
 gi|83846533|gb|EAP84409.1| phosphate regulon sensor histidine kinase, putative [Sulfitobacter
           sp. EE-36]
          Length = 347

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 14/241 (5%), Positives = 56/241 (23%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++I    ++  +     + + H++ +P+ A+   +E L      +    D  + ++   +
Sbjct: 103 QDITQVTNASQMRRDFVANVSHELRTPLTAMMGFIETLRGPARDDAPARDRFLGIMTGEA 162

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------------VQVSWT 105
                 +  +                    + +      +                    
Sbjct: 163 ERMNRLVGDLLSLSRVESDERVRPTDKVDLRYVLQSTMRNLNPLAVEANVTLVATMGDDP 222

Query: 106 GEKIDLSRERAKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKINGNLA 158
              +  + +  ++  NL                                  +++ +G   
Sbjct: 223 LPLMGDTDQLLQVFTNLIENGIKYGGVGKEVEISVETTLRDPSLRGPAVRVTIRDHGPGI 282

Query: 159 RFPEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +    +      +    +    V  + + ++ RL            + +L
Sbjct: 283 DPVHLPRLTERFYRADSHRSRALGGTGLGLAIVKHILNRHRGRLKITSDLGDGARFTVIL 342

Query: 214 E 214
            
Sbjct: 343 P 343


>gi|265767426|ref|ZP_06095092.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263252731|gb|EEZ24243.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 556

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
           AK    N        L  + + H+I +P+ AI    ELL        + + ++++  +S 
Sbjct: 179 AKEKAENADRSKSAFL--ANMSHEIRTPLNAIVGFSELLAAANTEEEKQKYLEILHTNSE 236

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----- 105
             +  +                    VD  + L D+EQ+    I  +  VQ+        
Sbjct: 237 LLLQLVNDILDLSKIEAGTLEFVYSDVDINLLLNDLEQLFRMKIGSNSPVQIITEPGLSS 296

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A      G          +N   F +   G+     +   
Sbjct: 297 CMVHTDRNRIAQVVSNFVSNAIKFTTEGSIRIGYQSS-ENGLRFYVSDTGSGISADKLEG 355

Query: 166 QIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++S  + + +       + ++    +  E            L 
Sbjct: 356 VFDRFVRLQSDKNGNGLGLSICKTIVNKLGGEIGAESEVGKGSTFWFTLP 405


>gi|320115126|ref|YP_004185285.1| ATP-binding region ATPase domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|319928217|gb|ADV78902.1| ATP-binding region ATPase domain protein [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 461

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 67/219 (30%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   + S I H++ +P+  +H+ +E + +       E ++ +    +  I  +K +    
Sbjct: 242 LRKQMTSDIAHELRTPLTTLHSHIEAMLDGVWEPTYERLKSLNEEVLRLINIVKDLETLN 301

Query: 72  GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +   +           + +  +    +        +    +             A++ +
Sbjct: 302 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 361

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 362 NLISNSNKYTPVGGKIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 421

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +   +  ++  E   +        + 
Sbjct: 422 TGGSGIGLSIAKAIVLAHGGKINVESEINKGSKFIVKIP 460


>gi|288940381|ref|YP_003442621.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288895753|gb|ADC61589.1| multi-sensor signal transduction histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 847

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 64/217 (29%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM--------QLIRLSSMSAIIRLK 65
           + + + H++  P+ AI N        L     + E +           + +S        
Sbjct: 612 VATGMAHELNQPLSAIVNYANGCVRRLQGGQGQPEELVGAMNQITAQAKRASEIIKRLRA 671

Query: 66  FMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            +          D    + +    +  +   V   +++  + E I +  +  ++   L  
Sbjct: 672 LVGKQPPARAEADLNHLVREVCSFLEFETSRVGVAIELELSAEAIPVCVDLVQVEQVLLN 731

Query: 125 ---VAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
               A  +L    +    ++       +    ++  +G     PE   ++ D  V +   
Sbjct: 732 LVGNALDALEERPESERRLRICTELEDDWAQVAVADSGPGI-EPEHLKRLFDPFVTTKEG 790

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   ++ R+  E +  H       L 
Sbjct: 791 GMGMGLAISQTIVENHEGRIWAESVLGHGSTFHLRLP 827


>gi|227819483|ref|YP_002823454.1| sensory kinase [Sinorhizobium fredii NGR234]
 gi|227338482|gb|ACP22701.1| sensory kinase in two-component regulatory system with KdpD,
           regulates kdp operon [Sinorhizobium fredii NGR234]
          Length = 901

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 51/232 (21%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
                  +  L + L + I HD+ +P+ AI  S   L +           +++  +   S
Sbjct: 658 RARLAAEADRLRSALLTSISHDLKTPLAAIMGSAGTLRDYSGAMPEEDRTDLLSTVVDES 717

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
                 +  +                      +           ++     ID   +   
Sbjct: 718 ERLNRFIANLLDMTRIESGATEPNASLHDVGDVVGTALRRAAKMLARHKTAIDAPGDLPM 777

Query: 115 -------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L NL   A    P G  V I      N     +   G      +     
Sbjct: 778 LKLDPVLFEQVLFNLLDNAAKYAPPGSTVRIRAWVDDNSVALQVMDEGPGIPSGDLERVF 837

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
                    D       +               +      D    V +  + 
Sbjct: 838 DSFYRVRKGDHVRAGTGLGLSICRGFIEAMGGTIAAGNRTDRSGAVFTITMP 889


>gi|222148810|ref|YP_002549767.1| two component sensor kinase [Agrobacterium vitis S4]
 gi|221735796|gb|ACM36759.1| two component sensor kinase [Agrobacterium vitis S4]
          Length = 872

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 68/242 (28%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60
           +        M+ V  L   I HD  + + AI  S +  LL     +     L+ +   + 
Sbjct: 468 ETQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPSDSSFADLMEIKRNAN 527

Query: 61  II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTGEKID 110
                    L F R        ++    +GD+  +++                       
Sbjct: 528 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRLISGTNVKLHVDYGRDLWPVKA 587

Query: 111 LSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155
              +  ++L+NL + A  ++P+GG                        ++  +  +   G
Sbjct: 588 DLSQFEQVLINLCVNARDAMPQGGNITISTRNVTGVEAAAYNHRGLPHEDFVLIEVADRG 647

Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I +    +        +    V  +  ++   +  E            L
Sbjct: 648 TGI-APEILDKIFEPFFTTKDVGKGTGLGLAMVYGIVKQSGGYIYLESEVGEGTTFRIFL 706

Query: 214 EK 215
            +
Sbjct: 707 PR 708


>gi|219870720|ref|YP_002475095.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
 gi|219690924|gb|ACL32147.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parasuis SH0165]
          Length = 744

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + L + I H++ +P+  I     +L E  +  +  + ++  ++SA+              
Sbjct: 242 STLMATISHELRTPLNGIIGLSRILLEGELSAQQREYLKTINISAVSLGHIFSDIIDLEK 301

Query: 76  SV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKIL 119
                             +  +     ++ +   +   +Q            +   ++IL
Sbjct: 302 IDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQIL 361

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSL-KINGNLARFPEKFTQIVDGNVES---- 174
            NL   A    P GG++++ V+   +++   + K +G   +  E+               
Sbjct: 362 WNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQG 421

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L  E   +   V + +++
Sbjct: 422 KKAQGSGIGLAISKRIARLMGGDLTVESELNQGSVFTLIIQ 462


>gi|167855126|ref|ZP_02477898.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
 gi|167853761|gb|EDS25003.1| polynucleotide phosphorylase/polyadenylase [Haemophilus parasuis
           29755]
          Length = 744

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 70/221 (31%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + L + I H++ +P+  I     +L E  +  +  + ++  ++SA+              
Sbjct: 242 STLMATISHELRTPLNGIIGLSRILLEGELSAQQREYLKTINISAVSLGHIFSDIIDLEK 301

Query: 76  SV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSRERAKIL 119
                             +  +     ++ +   +   +Q            +   ++IL
Sbjct: 302 IDSRRIELFRSEVEFSQLISNISHFANLMAEQKKIKFTIQYDDNLPDFVCVDNARLSQIL 361

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSL-KINGNLARFPEKFTQIVDGNVES---- 174
            NL   A    P GG++++ V+   +++   + K +G   +  E+               
Sbjct: 362 WNLVNNAVKFTPSGGEISLKVERRDHDHYAFILKDSGIGIKKSEQRKIFAMFYQSENSQG 421

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L  E   +   V + +++
Sbjct: 422 KKAQGSGIGLAISKRIARLMGGDLTVESELNQGSVFTLIIQ 462


>gi|167036702|ref|YP_001664280.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|166855536|gb|ABY93944.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
          Length = 451

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 67/219 (30%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   + S I H++ +P+  +H+ +E + +       E ++ +    +  I  +K +    
Sbjct: 232 LRKQMTSDIAHELRTPLTTLHSHIEAMLDGVWEPTYERLKSLNEEVLRLINIVKDLETLN 291

Query: 72  GYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +   +           + +  +    +        +    +             A++ +
Sbjct: 292 KFESDMLKLNKIKFDASELVKSILTNFEASFAEKEQEVVKNIEDNIMLFGDKDRIAQVFV 351

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--T 175
           NL   ++   P GGK+ I      +  +F ++ NG      +    F +   G       
Sbjct: 352 NLISNSNKYTPVGGKIKIDFYKDGDYAVFIVEDNGMGISKDDIPFIFERFYRGEKSRNRE 411

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +   +  ++  E   +        + 
Sbjct: 412 TGGSGIGLSIAKAIVLAHGGKINVESEINKGSKFIVKIP 450


>gi|117924054|ref|YP_864671.1| PAS/PAC sensor signal transduction histidine kinase [Magnetococcus
           sp. MC-1]
 gi|117607810|gb|ABK43265.1| PAS/PAC sensor signal transduction histidine kinase [Magnetococcus
           sp. MC-1]
          Length = 756

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 62/227 (27%), Gaps = 31/227 (13%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---------SSMSAIIRLKFMR 68
           +  RI H+I +P+  I    + +    ++ E+  +                       + 
Sbjct: 507 VARRIAHEIKNPLTPIQLWAQRMRRRYLKPELADVTDWKVLDEGTQSIIQQVDELKVLVD 566

Query: 69  LAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
               +       +              + D    D  ++V           +RA+I   +
Sbjct: 567 EFSTFARLPRPDMKKDFLSDTLHEVLTLHDAEFKDLSIEVHLDESIPPFPFDRAQIKQVV 626

Query: 123 FM---VAHASLPRGGKVTI------------SVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 A A++       I             V ++       ++ NG       +  ++
Sbjct: 627 TNLLTNAVAAMEDDRAQEISAAPSDTLVIRACVAENGRGVYVQVEDNGPGIPVGSR-DRV 685

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +    V  +  ++  RL  +   +   ++  +L 
Sbjct: 686 FEPYFTTKQKGTGLGLAIVKKIIEDHGGRLWVKEAPNGGTLMEFMLP 732


>gi|330826610|ref|YP_004389913.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
 gi|329311982|gb|AEB86397.1| PAS/PAC sensor signal transduction histidine kinase [Alicycliphilus
           denitrificans K601]
          Length = 829

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 58/226 (25%), Gaps = 21/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLK 65
            +    +   + I H++ +P+ +I    EL      +      + Q I  +    +  + 
Sbjct: 591 EASRTKSEFVANISHELRTPLQSILGFSELGMVRARQYEKYAAMFQDIHAAGQRMLGLVN 650

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSW---TGEKIDLSR 113
            +        +V +     +  +         +          +++            S 
Sbjct: 651 DLLDISKIESTVGAFRFARNDVRDLLEDVAAELQMLLERKGLTLRLDLGRVPLVSKVDST 710

Query: 114 ERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
             A++  N+   A    P G      +    ++  +  ++ +G      E          
Sbjct: 711 RFAQVARNVLSNAVKFSPEGGTIEMSASTPDESTILVQVRDHGPGIPPAELEAVFDAFVQ 770

Query: 173 EST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S          +       +   +   +      D   +   +L 
Sbjct: 771 SSKTRDESGGTGLGLAICRKIVTAHGGHIHATNAPDGGTIFHIVLP 816


>gi|313906135|ref|ZP_07839484.1| integral membrane sensor signal transduction histidine kinase
           [Eubacterium cellulosolvens 6]
 gi|313469022|gb|EFR64375.1| integral membrane sensor signal transduction histidine kinase
           [Eubacterium cellulosolvens 6]
          Length = 367

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 72/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + ++    +SS      L S I HD+ +P+  I    E + +        + + ++ I  
Sbjct: 118 LKESAEEKISSDSKSKELISNISHDLKTPVTTIKGYAEGIIDGVAATPEKQKKYIRTIYN 177

Query: 56  SSMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            ++     +  +                  +              ++    I ++    +
Sbjct: 178 KAVEIERLIDELTTYSKIEANRIPYNFQKIHVRDYFIDCVDELNLELESQNIQLNYFNYL 237

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
           +     I    +  +++ N+   +   + +   +     +D        ++ NG      
Sbjct: 238 TGEPMIIADPEQMRRVINNIVGNSVKYMDKPAGIINIRLRDVDEFIQIEIEDNGKGISQK 297

Query: 162 EK---FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +   T      I    V  +  +++ ++     +    V+  +L K
Sbjct: 298 DISRVFDRFYRSDTARTSRGGSGIGLSIVKKIVEDHEGKVWATSREGVGTVIYFVLRK 355


>gi|229551747|ref|ZP_04440472.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|258539146|ref|YP_003173645.1| two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
 gi|229314878|gb|EEN80851.1| sensor histidine kinase [Lactobacillus rhamnosus LMS2-1]
 gi|257150822|emb|CAR89794.1| Two component sensor transduction histidine kinase [Lactobacillus
           rhamnosus Lc 705]
          Length = 555

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +       + H++ +P+ AI    E L     ++    D+ +++I   S      +
Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKNDPATLDKFLKIIFDESKRLTQLI 383

Query: 65  KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
             +         +           +         +     +   V ++   + +   R+ 
Sbjct: 384 NDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDLQVVTDERKL 443

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I+ NL   A       G VTI+ Q  +     ++   G      E   +I +      
Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETE-QARIFERFYRVD 502

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L      ++            +  L 
Sbjct: 503 KARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547


>gi|91772955|ref|YP_565647.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanococcoides burtonii DSM 6242]
 gi|91711970|gb|ABE51897.1| Multisensor signal transduction histidine kinase [Methanococcoides
           burtonii DSM 6242]
          Length = 765

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           + + H++ +P+  I    ++L            +   + + +  S    I  + + +   
Sbjct: 534 ANVSHELRTPLNPIIGFSDILVSGVAGELNEKQKKYALNIKQNGSKLLTIVNRIIDMCNI 593

Query: 73  YTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124
               +D       + ++I +               + +    E  ++  ++ K    L+ 
Sbjct: 594 RISKLDLKCDCFKVIEMIIETKDLLNSIALKKKILLDLHIDPELNEIVADKTKTREILYN 653

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NVESTI 176
               A    P GG V+I      +    S+   G      +             +     
Sbjct: 654 LIENAIKFTPSGGHVSIHAIQKDDYVQISVTDTGIGIAHSDIGIIFRPFLQVDSSTTRQY 713

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D   +    V          +  +         +  L 
Sbjct: 714 DGVGLGLMLVKEYVKLQGGDIWVDSELGKGSTFTFTLP 751


>gi|72161733|ref|YP_289390.1| sensor histidine kinase [Thermobifida fusca YX]
 gi|71915465|gb|AAZ55367.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Thermobifida
           fusca YX]
          Length = 475

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 62/209 (29%), Gaps = 18/209 (8%)

Query: 23  CHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
            H++ +PI  +   LEL+ D+     EV++L+          ++ + +           +
Sbjct: 256 SHELRTPITIVRGHLELMGDDPDERREVVRLVTDELDRMARIVEDLLVLAQAQRPDFLRV 315

Query: 82  GLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
               + ++  D           D R+     G      +   + ++ L   A      G 
Sbjct: 316 EDVSLAELTSDIDAKVRALGDRDWRLDEIGEGIIRVDPQRITQAMVQLASNAVRHSSSGD 375

Query: 135 KVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQFYY 185
            + +    +           ++  G     PE   +I +         +      +    
Sbjct: 376 TIVLGSSLTDDGGRRTVRLWVRDFGPGI-APEDQERIFERFARAGSPRAHRPGAGLGLAI 434

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +A  ++  +  +         + +L 
Sbjct: 435 VRAIAEAHRGTVHLDSALGRGSTFTLILP 463


>gi|46578526|ref|YP_009334.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46447937|gb|AAS94593.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
          Length = 410

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 62/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + ++      +  L     L + + H + +P+ ++   L  L+    ++ +  +   + +
Sbjct: 169 LEESHETLRQTEKLALVGKLAAGVAHSVRNPLTSVKLRLFSLERSLTLDTQQREDFEVIA 228

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKI 109
                    +     ++      +               +     + + +VQ+       
Sbjct: 229 DEIRHLDAIVSNFLEFSRRPKLRMQTVSPSDVVDNTLQLLKHRIESFNVQVQLHRAERLP 288

Query: 110 DLSRERAKILLNLFM---VAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFP 161
            +  +  ++   L      A  ++         +    +       +  +  +G      
Sbjct: 289 VVKGDPEQLKEALVNLVLNACEAMGYDGRLDITEERGIINPLGRAVVIRIADSGPGVPI- 347

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++   I      +  +   +       +  E+   L             A+L 
Sbjct: 348 DRRDDIFQPFFSTKEEGTGLGLPIAKSIFEEHGGWLHLHSAPGRGATFVAVLP 400


>gi|42527475|ref|NP_972573.1| sensory box histidine kinase [Treponema denticola ATCC 35405]
 gi|41818060|gb|AAS12484.1| sensory box histidine kinase [Treponema denticola ATCC 35405]
          Length = 415

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 72/222 (32%), Gaps = 20/222 (9%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIR 63
            +L +L  + + + H+I +P+ AI   L+LL +              + I +        
Sbjct: 171 ENLASLTNVAAAVAHEIKNPLAAISIHLQLLKKNFTACNLSINQKAQKHIGVIEEEIERL 230

Query: 64  LKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            K +         +                 +   ++F      + +S++ E   +  + 
Sbjct: 231 NKIVVDFLFAVRPLKFEFVPVDINALLKNLYDTFFDEFNDSGIAISLSFSKELPKIQGDE 290

Query: 116 A---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               +  +N+   A +++P GG + IS +   +  I ++  +G     PE   +I +   
Sbjct: 291 RFLRQAFMNVLTNAKSAMPNGGFLDISTKAVNDFIIVTISDSGQGI-LPEDMHKIFEPYF 349

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  D   +       +  E+   +               L 
Sbjct: 350 TTKHDGTGLGLTMTYKVIKEHGGDINVYSDYGMGTSFKFSLP 391


>gi|28898321|ref|NP_797926.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153839423|ref|ZP_01992090.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|260361910|ref|ZP_05774917.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
 gi|260878657|ref|ZP_05891012.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|260894876|ref|ZP_05903372.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|28806538|dbj|BAC59810.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149747047|gb|EDM58035.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|308087860|gb|EFO37555.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|308091142|gb|EFO40837.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           AN-5034]
 gi|308114538|gb|EFO52078.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           K5030]
          Length = 576

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 70/236 (29%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS 56
            +       +L     +   + + H+I +P+ ++   L++L +      + + +  +  S
Sbjct: 200 QLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSTLSDEQFDALNQMECS 259

Query: 57  SMSAIIRL-------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +   +  +               +   + +     + +     +  I   ++ +   Q+S
Sbjct: 260 AELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVISQQKQVAITKNLSFNFDCQIS 319

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +    S   ++IL NL   A      G       +++      S+   G      ++
Sbjct: 320 SDKQYWIDSTRLSQILFNLIGNAIKFTDSGSVSVSVAEENDEVV-VSISDTGIGISRAKQ 378

Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     D ++        +       L    +  +  +  ++     +  + 
Sbjct: 379 AHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434


>gi|115523269|ref|YP_780180.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
 gi|115517216|gb|ABJ05200.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisA53]
          Length = 463

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 71/259 (27%), Gaps = 46/259 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISP---------------------IGAIHNSL 37
           + +     +    + +L  L + + H++ +P                     + AIH   
Sbjct: 204 LQRAQRQLIEQEKMASLGRLVAGVAHELNNPISFVYGNIHTLERYRQRMSSYLAAIHGGA 263

Query: 38  E---------------LLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           E               LL++   + D  ++     S       +      G   SVD   
Sbjct: 264 EPDEIAALRRELRIDALLEDYGSLIDGTLEGAMRVSDVVKNLRRLTFPKPGEAESVDVER 323

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMVAHASLPR--GGKVT 137
                            ++          I    +  +I++NL   A  ++       + 
Sbjct: 324 VARTAALWASRAKPGRVQLSFDIEPELWVIGNEGQFHQIMVNLIDNAIDAVRGAAEPMIA 383

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195
           I+ +    E   S+  NG          +I +    +    +   +  +    +A E+  
Sbjct: 384 ITARQRDGEIAISIADNGTGLSDG-LIDKIFEPFFTTKPVGEGTGLGLWISYGIAREHGG 442

Query: 196 RLLPEIIDDHNVVLSALLE 214
            L      +   + +  L 
Sbjct: 443 TLAAMNRPEGGALFTLTLP 461


>gi|326938133|gb|AEA14029.1| sporulation kinase [Bacillus thuringiensis serovar chinensis CT-43]
          Length = 408

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 243

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHIQVDGNLPAINGD 303

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      +K  +I   
Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENDKLEKIGKA 362

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 363 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 406


>gi|308187582|ref|YP_003931713.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
 gi|308058092|gb|ADO10264.1| two component sensor kinase/response regulator protein RcsC
           [Pantoea vagans C9-1]
          Length = 950

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 67/240 (27%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   +  L+   
Sbjct: 453 MEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGIDSLVTAM 512

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +        + +                     +
Sbjct: 513 NNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLVVKKRLTLYCFI 572

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + +    ++    F ++  G     
Sbjct: 573 EHDVPQVLDGDPLRLQQVISNLLNNAIKFT-HTGCIILHAWVAEGYLAFRVRDTGVGIPA 631

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +            + 
Sbjct: 632 KELP-RLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQFIVRIP 690


>gi|307151996|ref|YP_003887380.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
 gi|306982224|gb|ADN14105.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
          Length = 538

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 65/217 (29%), Gaps = 19/217 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLA- 70
            L S + H++ +P+  +   L+  L         + E +++    +   I  L+ +    
Sbjct: 318 QLLSDVSHELRTPLTIVSGYLQSALRRGNNLTATQREALEIALSEADRTIQLLQDLLDLA 377

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
                  +      ++     E + +     D+++      + I +  +     ++L NL
Sbjct: 378 RADSGRMHFHLEPIILNDWLKEVMEKTQKYADRQIDFVIPCDPITIQADPVRLRQVLYNL 437

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTID 177
                        +T+ ++  ++  I  +   G     P+    F +    +     +  
Sbjct: 438 IDNGVKYSDAQTPITVKLEAQQHSCILQVCDRGIGISLPDQARIFERFYRADEARSRSTG 497

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  L       +          + S  L 
Sbjct: 498 GTGLGLAIVKTLVEGMDGHISLSSQPGQGSIFSITLP 534


>gi|302038751|ref|YP_003799073.1| putative sensor histidine kinase [Candidatus Nitrospira defluvii]
 gi|300606815|emb|CBK43148.1| putative Sensor histidine kinase [Candidatus Nitrospira defluvii]
          Length = 924

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAI 61
                 +  L AL  L + I H++ +P+  I N+  L+ +  G +    + + L      
Sbjct: 665 ESQRSQAEKLAALGHLAADIAHEVNNPLAGITNAFHLVKQGIGSDHRHYRFVELIDREIE 724

Query: 62  IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                ++  +     V                    +   +       +   V+      
Sbjct: 725 RLAIIVKKMYSLYQGVPATERQATNIDELLQDVATLVGHKLTSKRLRLRTDVVTRRQVVD 784

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               +  ++LLNL   A  + P   +V +SV +   +  +S+   G      +   +I +
Sbjct: 785 APRSDLFQVLLNLVQNAIDASPADSEVGLSVAERDGQLRWSVTDRGTGI-ATDILPRIFE 843

Query: 170 GNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LEK 215
               +          +       L +    R+  E   +H    + +  LE+
Sbjct: 844 PFFTTKSGAGWQGLGLGLSVSRGLVYAMGGRIEVETQPEHGSTFTVVHPLER 895


>gi|298675067|ref|YP_003726817.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
 gi|298288055|gb|ADI74021.1| PAS/PAC sensor signal transduction histidine kinase [Methanohalobium
            evestigatum Z-7303]
          Length = 1104

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 70/242 (28%), Gaps = 28/242 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
            ++K          +     S + H++ +PI +I    EL+           + E M  I 
Sbjct: 858  LSKTNEELRELDKMKDEFISNLSHELRTPITSIKGFSELIYNEKLGTLNEKQKEGMDSIV 917

Query: 55   LSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVS 103
             S       ++ +                 VD    +        +      +     V 
Sbjct: 918  KSCDRLRWLIESLLYVNKLQTEKIQYKFEPVDVETLIDGVVSNLSLQIKEKEISIEKYVD 977

Query: 104  WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNL 157
                 ++  ++   ++L++L   A      GGK+ I   +       N     +K NG  
Sbjct: 978  ENLPYVNGDKDYLRQVLVHLMDNARKFTSSGGKIQIHAFNDADKSMDNFVHIIVKDNGIG 1037

Query: 158  ARFPEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +             +DG++    +   +  Y    +   +   +  +  ++    +   
Sbjct: 1038 IKKESIPDIFKLFYQIDGSMTRKYEGTGLGMYLCNKIIETHNGYIWVDSEENAGTDVHVK 1097

Query: 213  LE 214
            L 
Sbjct: 1098 LP 1099


>gi|288958053|ref|YP_003448394.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288910361|dbj|BAI71850.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 843

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/247 (9%), Positives = 64/247 (25%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQ 51
           M +          S  + A+  L   + HD  + + A+    +LL             + 
Sbjct: 452 MTERKSLEAQFAQSQKMQAVGQLAGGVAHDFNNLLTAMIGFCDLLLLRHKPGDQSFSDIM 511

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108
            I+ ++  A   ++ +            +I + D+   + + +       +         
Sbjct: 512 QIKQNANRAANLVRQLLAFSRQQTLQPRVINVTDVLAELANLLRRLIGENIELKMIHGRE 571

Query: 109 ----IDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIF 149
                    +  ++++NL + A  ++                   +              
Sbjct: 572 LGLVKVDQNQLEQVIINLVVNARDAMAGGGKLTINTTNHVVSEPERREHETVPPGGYVSI 631

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +   G      E   +I +    +        +    V  +  +    +L +       
Sbjct: 632 DVIDTGCGI-ARENLQRIFEPFYTTKEVGSGTGLGLSTVYGIVRQTGGFVLVDSAVGEGT 690

Query: 208 VLSALLE 214
             + LL 
Sbjct: 691 TFTILLP 697


>gi|196231120|ref|ZP_03129980.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196224950|gb|EDY19460.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 892

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 27/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        MD +  L   + HD  + +  I  +  L             ++Q I  ++ 
Sbjct: 505 EEQYRQSQKMDAIGQLAGGVAHDFNNLLMVIQGNASLALMAELPPEEVHAILQDIVTATE 564

Query: 59  SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A      +    R        ++    + +  ++    I  D  +Q   T     +  +
Sbjct: 565 RAAALTSQLLAFSRRQPMQPRDLEMNTIVTEASRMFGRLIGEDITLQTELTPSPTPVHAD 624

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQ---------------DSKNENIFSLKINGN 156
                ++LLNL + A  ++P GG++T+  +               D +      +  NG 
Sbjct: 625 SGMIEQVLLNLAVNARDAMPHGGQLTLRTRVVPPQDLPGKLAARVDGEEFVQVDVSDNGQ 684

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                              +     +       +A ++   L  E +  H    S  L +
Sbjct: 685 GIAADCLPHIFEPFFTTKEVGKGTGLGLATAFGIAQQHGGWLTVESMVGHGSTFSLFLPR 744


>gi|171320942|ref|ZP_02909936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
 gi|171093807|gb|EDT38944.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           MEX-5]
          Length = 594

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 62/225 (27%), Gaps = 21/225 (9%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           S  L   L + + H++ +P+  I+  +E+L     +   +Q I     SA    + +   
Sbjct: 260 SNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALQLQAIDAIDRSARSLTRMVGDI 319

Query: 71  -----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRER 115
                            VD +    D     +   +    V      +        +   
Sbjct: 320 LDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERL 379

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++L NL   A    P GG VT+++       +  +   G                    
Sbjct: 380 RQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADD 439

Query: 176 ID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                     +    V  +A  +  ++  E    +     +  L 
Sbjct: 440 SPASPRRGLGLGLSIVRHIAQLHGGQVRVESAGRNRGATFTVTLP 484


>gi|291561249|emb|CBL40048.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SS3/4]
          Length = 468

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 61/228 (26%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     L S  +     + + H++ +P+ AI    EL++     +   +       +A 
Sbjct: 210 RQQHEDILKSSQVRQEFTANVSHELKTPLTAISGYAELIEHGMSGENTERFASEIHKNAA 269

Query: 62  IRLKFMRLAFGYTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
             L  +      +            D  +     E V    +   K+             
Sbjct: 270 RLLTLINDIIQLSQLDGGKKDVEYRDLDLFPLARECVDMLQMNAQKQNVTIRVQGGEAPV 329

Query: 113 RERAKIL----LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165
               +++     NL   A     + G VT++          S+K  G           F 
Sbjct: 330 FADKQLMEELIYNLCDNAIRYNKKDGTVTVTTGIENGHTFLSVKDTGIGISAEHQERVFE 389

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           +    +   +       +    V  +  ++  +L  E        +  
Sbjct: 390 RFYRVDKSRSKATGGTGLGLAIVKHIVAQHGAKLTLESEQGKGTEIRV 437


>gi|222086167|ref|YP_002544699.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221723615|gb|ACM26771.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 871

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 65/242 (26%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60
           +        M+ V  L   I HD  + + AI  S +  LL     +     L+ +   + 
Sbjct: 469 ETQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQARPADASFADLMEIKRNAN 528

Query: 61  II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSWTGEKID 110
                    L F R        ++    +GD+  ++E                       
Sbjct: 529 RAAVLVRQLLAFSRKQTMRPTILNLTDVIGDLRMLVERLLSGTHVKLDVDYGRDLWPVKT 588

Query: 111 LSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKING 155
              +  ++L+NL + A  ++                       +    +   +  +   G
Sbjct: 589 DLSQFEQVLINLCVNARDAMPGGGTLTLRTRNLPVMDVAAFNYAYLPHEEMVLVEVNDTG 648

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I +    +        +    V  +  ++   + PE            L
Sbjct: 649 TGI-APEIMDKIFEPFFTTKEVGKGTGLGLAMVYGIIKQSGGYIHPESEVGKGTTFRIFL 707

Query: 214 EK 215
            +
Sbjct: 708 PR 709


>gi|167767347|ref|ZP_02439400.1| hypothetical protein CLOSS21_01866 [Clostridium sp. SS2/1]
 gi|167711322|gb|EDS21901.1| hypothetical protein CLOSS21_01866 [Clostridium sp. SS2/1]
          Length = 451

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 69/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +  +           + + H++ +P+  I +  E L E  + +E  +   +  +  
Sbjct: 220 MFERLEESFEKEQ---QFTADVSHELRTPVTVIISQCEYLIEDPVLEEEEKEEIMIILRQ 276

Query: 61  IIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             R+  +                       +     + +  +   +   +   V      
Sbjct: 277 ARRMSKLINEMLMIARGEMSESYDMEEVDLILLTEVIVEELREQAEKKKIQISVFSDRDV 336

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
           + +       ++++NL   A +     G + I  ++  +  I  +K +G      +    
Sbjct: 337 KMMGNHTLLLRMMMNLVQNAISYGKEHGHIDILWKEQGDMIIGEVKDDGIGIDQEDIPKI 396

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +    +   + +     +    V  +   +  ++  E  +           K
Sbjct: 397 WDRFYRVDKSRSRENGGTGLGLSMVHFIVAVHGGQIHVESKNGEGTSFIFQFPK 450


>gi|167762401|ref|ZP_02434528.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC
           43183]
 gi|167699507|gb|EDS16086.1| hypothetical protein BACSTE_00755 [Bacteroides stercoris ATCC
           43183]
          Length = 923

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIR 54
           M +      ++   L     + I H+I +PI  I + ++LL   G          + + +
Sbjct: 387 MREKQYIEEMNQSKLR--FFTNISHEIRTPITLIISQVDLLLNSGKLSTYAYSKLLNIHK 444

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTG 106
            +     +  + +       G +   I   D+  ++++            +    +    
Sbjct: 445 NAGNLKSLISELLDFRKQEQGLLKLKISQFDLCDLLQEHFVLFKELSANRNISFSLHMNV 504

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
           +   +  +R ++   +      A      GG + +   +      FS+  NG      + 
Sbjct: 505 QHCMIWGDRMQLQKVINNLLSNAFKYTSDGGTIVLGFTEKDMVCRFSVTDNGAGISEEDY 564

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +              I       +   +K  +  +            L+K
Sbjct: 565 QKIFERFYQVENIGLYGGTGIGLALTQGIVKAHKGEINVKSQLGKGSCFQVTLKK 619


>gi|218780125|ref|YP_002431443.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761509|gb|ACL03975.1| PAS/PAC sensor signal transduction histidine kinase, HupT
           [Desulfatibacillum alkenivorans AK-01]
          Length = 558

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 67/244 (27%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRL 55
           M +     + +  +     + + + H++  P+ AI      L+++ E   +  + +L  +
Sbjct: 308 MLEKDALLIQAGKMTILGEMSAGVAHELNQPLNAIRVGNEFLKVMAEKDRQIPLDELKLV 367

Query: 56  SSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW 104
           +                   F R A      VD  + +  +   +       +  V +  
Sbjct: 368 ADEVTAQVDRAAAIINRLKAFGRKAECEKEPVDINVPVNGVLGMIGSQLALENITVTLEL 427

Query: 105 TGEKID---LSRERAKILLNLFMVAHASLPRGGKVTISVQ---------DSKNENIFSLK 152
                          ++L NL   A  ++      ++S              +     + 
Sbjct: 428 EKNLPPVIAHENRMEQVLFNLITNARDAIGDKRDCSMSPYVGNINIRSYRDGDMVAVEIT 487

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      +   +I +    +        +    +  +  +   R+  +  +    V +
Sbjct: 488 DTGVGM-SQDVQERIFEPFFTTKEVGKGMGLGLSIIYGIIRDYGGRIEVQSKEGAGSVFT 546

Query: 211 ALLE 214
               
Sbjct: 547 FFFP 550


>gi|86160633|ref|YP_467418.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85777144|gb|ABC83981.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 686

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 67/249 (26%), Gaps = 37/249 (14%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43
            K +   L+ +  +V++  L + + H++ +P+  +  +L  +DE                
Sbjct: 292 RKQLHARLALADRMVSVGTLAAGVAHELNNPLAYVVANLSYVDEQLTVLAPRLATARSPR 351

Query: 44  ---------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
                        +         +       F R      G V     L     V  + I
Sbjct: 352 EPDLANALLDAVHDARDGAERMRVIVRDLKTFSRPDEDRAGPVSLPPLLDSCVSVAWNEI 411

Query: 95  AVDKRVQVS--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-----SKNEN 147
               R+                  ++ LNL + A  ++P G      ++      + +  
Sbjct: 412 RHRARLVRDVADVPPVQGCEARLGQVFLNLLVNAAQAIPDGHADEHQIRVSARALTGDRV 471

Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDH 205
              +  +G+    PE   +I D    +        +       +       +  E     
Sbjct: 472 AVEVADSGSGI-APEHLPRIFDPFFTTKPPGVGTGLGLSICQSIVSAMGGEIQVESALGR 530

Query: 206 NVVLSALLE 214
                 +L 
Sbjct: 531 GTAFRVILP 539


>gi|89894513|ref|YP_518000.1| hypothetical protein DSY1767 [Desulfitobacterium hafniense Y51]
 gi|89333961|dbj|BAE83556.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 481

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 72/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           +  ++   L   D   +L S I HD+ +P+ +I   +E LLD +    E  +    +   
Sbjct: 241 LKNSVHTQLKYEDNRKMLISSISHDLKTPVTSIKGYVEGLLDGIANSPEKKEKYLKTIYR 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110
              ++  M         +D        E+        D   ++    E+           
Sbjct: 301 KAEQVDTMIDDLLLYAKLDLNQIPFSFEKTNIGEFLDDGLQEIEPEMERNGIKILFESEL 360

Query: 111 --------LSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
                         +++LN+   +   + +   V     +++ +  I  +K NG      
Sbjct: 361 TSAQEIPLDRERMMRVILNIIDNSRKYMDKEEGVITLSLRETHSSVIIEIKDNGRGIPKK 420

Query: 162 E---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +     I    +       +   ++ R+     +     +   L +
Sbjct: 421 DVAQIFERFYRSDTARTEIKGSGLGLAIAKQIVEGHEGRIWAVSREGKGTSVLISLPR 478


>gi|219668944|ref|YP_002459379.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219539204|gb|ACL20943.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 479

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 72/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           +  ++   L   D   +L S I HD+ +P+ +I   +E LLD +    E  +    +   
Sbjct: 241 LKNSVHTQLKYEDNRKMLISSISHDLKTPVTSIKGYVEGLLDGIANSPEKKEKYLKTIYR 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------- 110
              ++  M         +D        E+        D   ++    E+           
Sbjct: 301 KAEQVDTMIDDLLLYAKLDLNQIPFSFEKTNIGEFLDDGLQEIEPEMERNGIKILFESEL 360

Query: 111 --------LSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
                         +++LN+   +   + +   V     +++ +  I  +K NG      
Sbjct: 361 TSAQEIPLDRERMMRVILNIIDNSRKYMDKEEGVITLSLRETHSSVIIEIKDNGRGIPKK 420

Query: 162 E---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +     I    +       +   ++ R+     +     +   L +
Sbjct: 421 DVAQIFERFYRSDTARTEIKGSGLGLAIAKQIVEGHEGRIWAVSREGKGTSVLISLPR 478


>gi|260771991|ref|ZP_05880908.1| osmolarity sensory histidine kinase EnvZ [Vibrio metschnikovii CIP
           69.14]
 gi|260612858|gb|EEX38060.1| osmolarity sensory histidine kinase EnvZ [Vibrio metschnikovii CIP
           69.14]
          Length = 433

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 7/218 (3%)

Query: 4   NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60
            +   + +++   ALL + I HD+ +P+  I  + E++   +  + + ++      +   
Sbjct: 214 QMSQGIQALEEDRALLMAGISHDLRTPLTRIRLATEMMSPQDSYLAEGIISDTEECNEII 273

Query: 61  IIRLKFMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
              + +++     T   VD     GDI      +    +    +             + +
Sbjct: 274 SQFMDYLKPVDKQTFQAVDLNEIGGDIASSEGGYELHIETDFQASIEPVFGNPIAIKRAV 333

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176
            NL + A        K++  V   K      ++ NG      +    F   + G+     
Sbjct: 334 SNLVVNALRYGNGWVKISTGVTADKRMAWVCVEDNGPGIDPSQVQKVFEPFIRGDTARGS 393

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +    V  +  ++   ++     +  + +     
Sbjct: 394 EGTGLGLAIVKRIVGQHHGAVVLNNRSEGGLKIQLSFP 431


>gi|229096049|ref|ZP_04227024.1| hypothetical protein bcere0020_12980 [Bacillus cereus Rock3-29]
 gi|229115004|ref|ZP_04244416.1| hypothetical protein bcere0017_13000 [Bacillus cereus Rock1-3]
 gi|228668516|gb|EEL23946.1| hypothetical protein bcere0017_13000 [Bacillus cereus Rock1-3]
 gi|228687434|gb|EEL41337.1| hypothetical protein bcere0020_12980 [Bacillus cereus Rock3-29]
          Length = 423

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKHLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +            I L +  Q +         + + +            
Sbjct: 246 NSIITKFLSISKTREFKREPFPINIFLREYIQQLLASEVFLHNISIDYNFSNELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L            +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNQ-AGTTFTISIP 409


>gi|254445728|ref|ZP_05059204.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260036|gb|EDY84344.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 1032

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+       +  L +   + + H+I +P+  +     LL +  + +   + +     S 
Sbjct: 389 MAEKAIL---AERLKSEFLANMSHEIRTPMNGVIGMTHLLQDTELNETQQEYVETMLNST 445

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              L  +      +      + +  ++  + D  A    +                 +  
Sbjct: 446 ESLLVLINDILDLSKIEAGKMTIEQMDVDVMDLQAQVSSLFASNAQAKGVELVSVYPLDC 505

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARF 160
               +       ++L NL   A     +G           ++      F +   G     
Sbjct: 506 YKTFVTDPYRLKQVLANLLSNAIKFTEKGDVTLRIEIEEPREDGARIRFEVVDTGIGIAP 565

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               T     +              +       L      RL  E         +  LE
Sbjct: 566 EVVDTLFKSFSQADASTTRRFGGTGLGLAISQRLVQYLGGRLQVESELGVGTTFTFALE 624


>gi|167896670|ref|ZP_02484072.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 7894]
          Length = 927

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 424 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 483

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 484 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 543

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               +IL NL   A     RG       +       +     + 
Sbjct: 544 LSSIGEGVARHYAGDPTRIRQILSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 603

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 604 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 663

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 664 TVTVALP 670


>gi|218779450|ref|YP_002430768.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218760834|gb|ACL03300.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 1056

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 66/242 (27%), Gaps = 31/242 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60
            AK    +   +    L  + + H++ +P+ +I     + L E+       Q  ++  +  
Sbjct: 808  AKEKAESADRLKSAFL--ATMSHELRTPLNSIIGFSSIVLQELPGPLNKEQKKQMGMVRN 865

Query: 61   IIRLKFMRLAF-----------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
              R     +                    +  +      +  +  + E      +  Q +
Sbjct: 866  SARHLLALINDVLDISKIEADQLVLAPEEFDFTEAVNGVVQSVRPLAEKKGLELELKQDA 925

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNL 157
                     R   ++L+NL   A     +G         +       +  +  ++  G  
Sbjct: 926  SKLRIFCDKRRMEQVLINLVNNAIKFTEKGSVSVLVSGPSNRNPHGVDMVMIQIQDTGIG 985

Query: 158  ARFPE-----KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +  +     K  + ++  ++   +   +       L       +  E    H    +  
Sbjct: 986  IQPGDFSKLFKPFRQIETGLDRKYEGTGLGLSICKKLVGLMGGEITVESEIGHGSRFTVR 1045

Query: 213  LE 214
            L 
Sbjct: 1046 LP 1047


>gi|87309080|ref|ZP_01091217.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
 gi|87288071|gb|EAQ79968.1| sensory box sensor histidine kinase/response regulator
           [Blastopirellula marina DSM 3645]
          Length = 1013

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 28/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
           AK      ++    +   + + H+I +P+  +    +LL     ++    DE +Q+IR S
Sbjct: 482 AKETAEAANAAK--SEFLANMSHEIRTPLNGLLGFTDLLLRGAANDPQKRDEYLQIIRTS 539

Query: 57  SMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             + +  +  +                     +V + +      +  E  + +       
Sbjct: 540 GRNLLDVINDLLDLSKIEAGKLETESLPCDPQAVVAEVVSILRVKADEKALRLTCDWSGE 599

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPE 162
              + +  S    ++L NL   A      G     +   +   +  F ++  G      E
Sbjct: 600 VPPQIVTDSVRLRQLLTNLIGNAIKFTQFGSVSIDAGWHAPLQQLTFVIRDTGIGI-PEE 658

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           K   I D                 +       +A      +  E         +  +
Sbjct: 659 KLDLIFDPFTQADATTTRRFGGTGLGLAICRRIARLLGGDVSVESEIGAGSTFTVTI 715


>gi|328473673|gb|EGF44508.1| sensor histidine kinase/response regulator [Vibrio parahaemolyticus
           10329]
          Length = 576

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 70/236 (29%), Gaps = 26/236 (11%)

Query: 4   NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLS 56
            +       +L     +   + + H+I +P+ ++   L++L +      + + +  +  S
Sbjct: 200 QLARAREEAELANQSKSEFLAMMSHEIRTPLNSVLGMLDILRQSTLSDEQFDALNQMECS 259

Query: 57  SMSAIIRL-------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +   +  +               +   + +     + +     +  I   ++ +   Q+S
Sbjct: 260 AELLLAIISDILDLSKIESGSFQLNEQWIHLNDTVTFVISQQKQVAITKNLSFNFDCQIS 319

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +    S   ++IL NL   A      G       +++      S+   G      ++
Sbjct: 320 SDKQYWIDSTRLSQILFNLIGNAIKFTDSGSVSVSVAEENDEVV-VSISDTGIGISRAKQ 378

Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     D ++        +       L    +  +  +  ++     +  + 
Sbjct: 379 AHLFTAFHQGDRSITRRFGGTGLGLAITKHLVEMMRGEISVKSRENEGSDFTIRIP 434


>gi|310818754|ref|YP_003951112.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391826|gb|ADO69285.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 443

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 66/238 (27%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQ 51
           A+     +  + L+  + + + H++ +P+  +  +L  L+          +      V++
Sbjct: 197 AERERAEVERLVLMGQMAAGVAHEVNNPLAFVKANLNFLESKAAGEGLSLDRAELRTVLR 256

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                       +  ++         D         L +  ++    +    +V +    
Sbjct: 257 ETLEGVSRIQQIVTDLKDFSRAGNLDDKEGGALEDALREAGRLASVRLGAGCQVALELEP 316

Query: 107 EKIDL---SRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLA 158
               +    R   +++LNL + A  ++ +             +  +      ++ NG   
Sbjct: 317 GLPAVRLGQRHVVQVMLNLLLNAVDAVEQAEPPRSPEILVRARRVEQGVALLVEDNGPGI 376

Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE   +I +    +        +               L  E         +  L 
Sbjct: 377 -PPEVLPRIFEPFFTTKPPGKGTGLGLALCREYIVRAGGTLGAENRPGGGARFTLRLP 433


>gi|306833225|ref|ZP_07466354.1| sensor histidine kinase KdpD [Streptococcus bovis ATCC 700338]
 gi|304424592|gb|EFM27729.1| sensor histidine kinase KdpD [Streptococcus bovis ATCC 700338]
          Length = 899

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            + +     +  L A L   I HD+ +P+ +I  +   L       DE   +     +  
Sbjct: 659 KEKVAILAKNEQLRANLLRAISHDLRTPLTSISGNASNLLSNGDSFDEATKKQMYTDIYD 718

Query: 55  LSSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            S                 +           VD ++         +      +       
Sbjct: 719 DSMWLINLVENLLAVTRIEENNVNLRIIDDLVDDVVSEALRHVNRKSVEHHIEVKHKDEF 778

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +R   ++++N+   A    P+G  + I  +   N+ + S+  +G      E   
Sbjct: 779 LIAKMDARLIVQVIINIVDNAIKYTPQGSHILIQTERQGNKAVISISDDGEGM-SDEVKE 837

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D           +  S  +       + + +   +          + +  L 
Sbjct: 838 RVFDMFYSGINKVVDSHRSLGLGLALCKSIINAHGGEISVSDNIPQGSIFTFTLP 892


>gi|294501111|ref|YP_003564811.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
 gi|294351048|gb|ADE71377.1| two-component sensor histidine kinase ResE [Bacillus megaterium QM
           B1551]
          Length = 590

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 67/219 (30%), Gaps = 23/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + + H++ +PI  +    E + +         ++    +   S     +  + + LA   
Sbjct: 372 ANVSHELRTPISMLQGYSEAIIDDIASTDEEKKEIAQVIYDESLRMGRLVNELLDLARME 431

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERAKILLN 121
            G V   +    + +  E  +   + +            ++    E +  S    ++L N
Sbjct: 432 AGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKIEDEFEAMIDSDRMEQVLTN 491

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           L   A       G+V + +  S++E   S++  G      +    F +    +       
Sbjct: 492 LIDNAIRHTDDYGEVKLHLDKSQSEIHLSVQDTGAGIPKEDLPFVFERFYKADKARTRGK 551

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +       +   ++  +  E   +        L K
Sbjct: 552 SGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590


>gi|298491263|ref|YP_003721440.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
 gi|298233181|gb|ADI64317.1| signal transduction histidine kinase with CheB and CheR activity
            ['Nostoc azollae' 0708]
          Length = 1407

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 68/217 (31%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-------- 67
            S + H++ +P+  +    +LL     +    ++ ++ I  S+ +    +  +        
Sbjct: 1026 SVLSHELRNPLNCLLGWTQLLRKQQLDEAKTNQALEAIERSAKAQHQLIGDLLDISRISV 1085

Query: 68   RLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123
                     V  +  +     V++    A + ++Q         L  ++    +++ NL 
Sbjct: 1086 GQMRLEAQPVKLIPVIEAAIDVVQLAADAKNIQIQSRLDSAGRTLVGDQIRLQQVIWNLL 1145

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVESTIDS 178
              +    P GG++ I++  S  +    ++  G               +  D +   +   
Sbjct: 1146 SNSIKFTPVGGRIDITLDYSPFQGEIQVRDTGVGISADFLPYIFDRFRQADRSPTRSNTG 1205

Query: 179  HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
              +    V  L   +   +      +      +  L 
Sbjct: 1206 LGLGLSIVRHLVELHGGTVEVTSPGEGQGATFTVRLP 1242


>gi|87199946|ref|YP_497203.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
 gi|87135627|gb|ABD26369.1| periplasmic sensor signal transduction histidine kinase
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 742

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 61/220 (27%), Gaps = 22/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +  RI H+I +P+  I  + E L            +   +L            K +    
Sbjct: 510 VARRIAHEIKNPLTPIQLATERLKRRYGRQIENDPELFEELTSTIIRQVGDLRKMVDEFS 569

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------GEKIDLSRERAKILLNL 122
            +      +    D   ++   + + +    +                   + A+++ N+
Sbjct: 570 SFARLPKPVFRAEDASDLVRQSLFLQEVAHTAIDFSFACDAPSMPIQCDRHQFAQVMTNV 629

Query: 123 FMVAHASLPRGGKVTISVQDS-------KNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
              A  ++    K                + +  ++ +  N    P +  +I++  + + 
Sbjct: 630 LKNAVEAIEAKAKTEDVDYRGRIAVTLAGDHDTVTVSVTDNGIGLPAERERILEPYMTTR 689

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +  E+   +           ++    +
Sbjct: 690 EKGTGLGLAIVHKIVEEHGGEMAFTAEPGGGTRVTMRFAR 729


>gi|152170|gb|AAA63510.1| dicarboxylate sensor protein [Sinorhizobium meliloti]
          Length = 636

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48
           +       + +  L     + + + H+I  P+  I    +                  + 
Sbjct: 405 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMES 464

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           + +L            +F R      G       +     +    F      +++    +
Sbjct: 465 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRIDLPPD 524

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
            +          ++L+NL   A  ++       I V+          ++  NG      +
Sbjct: 525 GLQALGNRIRLEQVLINLLQNALEAIGDSENGAIQVRCKAAPGGIALTVADNGPGI-AAD 583

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++      S  D   +       +  +    +  E         +  L+K
Sbjct: 584 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFTVNLKK 635


>gi|114330247|ref|YP_746469.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
 gi|114307261|gb|ABI58504.1| multi-sensor hybrid histidine kinase [Nitrosomonas eutropha C91]
          Length = 1221

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 66/249 (26%), Gaps = 38/249 (15%)

Query: 2   AKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
            +++       +L      A L + + H+I +P+  +   +++LD+  +     ++  L 
Sbjct: 548 RQDLEQARHEAELANQAKSAFLAA-MSHEIRTPMNGVIGMIDVLDQTSLSTYQREMTDLI 606

Query: 57  SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             SA   L+               + +          +         +     V+  + V
Sbjct: 607 RESAFALLEIIEDILDFSKIEAGRLEIEQTPISLEKVVERACGTLTHMAASKEVELTLFV 666

Query: 103 S--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---------ENIFSL 151
                   +  +    +IL+NL   A        ++      +             +F +
Sbjct: 667 DPALPEGVLGDALRLRQILINLINNAIKFSSGMSRLGRVAVRASPAEEVDGDVVTVMFQV 726

Query: 152 KINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
             NG          ++                   +       L    K  +  E   D 
Sbjct: 727 IDNGIGM-DDAARERLFTPFSQGDASTTRRFGGTGLGLIICRRLVELMKGEISVESKPDV 785

Query: 206 NVVLSALLE 214
             V +  + 
Sbjct: 786 GSVFTVRIP 794


>gi|217037913|gb|ACJ76428.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 19/229 (8%), Positives = 55/229 (24%), Gaps = 25/229 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF 66
           S    +   + + H++ +P+  I    ++++    +     ++  L+        +    
Sbjct: 407 SNKAKSTFLATMSHELRTPLNGILGMAQIIESNIKDEEQHKQIKVLLESGDHLLSLLNDI 466

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------------E 114
           +  +      ++          VI+        +      + I  +              
Sbjct: 467 LDFSKIEQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIINNNINEKTIFLGDKPR 526

Query: 115 RAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD- 169
             +I+ NL   A     +G              +      ++  G   R           
Sbjct: 527 IRQIIFNLISNAVKFTHKGSITLNFSHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEPF 586

Query: 170 ----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         +    V  L    K  +     +      + +L 
Sbjct: 587 IQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635


>gi|193212167|ref|YP_001998120.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
 gi|193085644|gb|ACF10920.1| PAS/PAC sensor hybrid histidine kinase [Chlorobaculum parvum NCIB
           8327]
          Length = 648

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 66/233 (28%), Gaps = 30/233 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS-------MSAIIR 63
           M+LV  L   I HD  + + AI  + EL L ++      +  IR                
Sbjct: 271 MELVGQLAGGIAHDFNNALAAIIGNTELVLKKLDPAHPTVSNIRDIHTLATRSADLTRQL 330

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L F R         +    + +   + +  +  + +++     E I +  +  ++   L 
Sbjct: 331 LAFARKQVAMPQVFNLTEAISESLHLHQRLLDDNIQLEWHLCEEPIQVKFDPTQLEQILS 390

Query: 124 M---VAHASLPRGGKVTISVQ----------------DSKNENIFSLKINGNLARFPEKF 164
                A  ++   G++T+                      +    S+  NG+        
Sbjct: 391 NLLINARDAIEGSGRITVKCGGVRFDPDDGKTGTPGLSPGHYAKLSVTDNGSGIEAT-VL 449

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I +    +        +    V  +  +N   +               L +
Sbjct: 450 PHIYEPFFTTKEVGKGTGLGLSTVYGIVRQNNGHIECNSEPGKGTTFEIWLPR 502


>gi|169237687|ref|YP_001690890.1| putative signal-transducing histidine kinase [Halobacterium
           salinarum R1]
 gi|167728464|emb|CAP15281.1| putative signal-transducing histidine kinase [Halobacterium
           salinarum R1]
          Length = 494

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 58/215 (26%), Gaps = 6/215 (2%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       +  L     + + HD+ +P+  I   L+LL E    + +  +         
Sbjct: 280 EREQALTERNERL-DEFAAIVSHDLRNPLSIIGGYLQLLQEEHDSEHLETMAEAHGRMET 338

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIED--FIAVDKRVQVSWTGEKIDLSRERAKIL 119
           +    + LA       D                    + R++V      +       +++
Sbjct: 339 LIEDLLSLARHGDDVDDLNPVQLGALVEACWGNVETANARLRVETDQTVLADENRLKELV 398

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
            NL   A         VT+          F ++ +G+  +  ++      G   ++ +  
Sbjct: 399 ENLIRNAIEHGGEDVTVTVGDLSGDEG--FYIEDDGSGIQEADREDVFTSGF-STSTEGT 455

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 V  +   +   +               + 
Sbjct: 456 GFGLAIVKRIVDAHGWTVTVTDGSQGGARFEFRVP 490


>gi|167763266|ref|ZP_02435393.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
 gi|167698560|gb|EDS15139.1| hypothetical protein BACSTE_01639 [Bacteroides stercoris ATCC
           43183]
          Length = 624

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 63/228 (27%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK        +    L  + + H+I +P+ AI     LL   ++    +  + LI  ++ 
Sbjct: 393 AKEKAEESDRLKSAFL--ANMSHEIRTPLNAIIGFSSLLPHIEDAEERNHYISLINHNNE 450

Query: 59  SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +             + L+  +    D +       Q         K+   +    
Sbjct: 451 LLLNIINDVLDLSKIEAGHIELSPVWCNLSDLIDESCTECQPNVPEGVTLKKRYPATPNL 510

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L NL   A  +  + G V IS + + +E   S+   G      +     
Sbjct: 511 IKQDPMRIKQVLSNLISNALKNTVQ-GYVEISYETTPSETRISVSDTGRGIPEEKLGIIF 569

Query: 168 VDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    I    +       +       +      +     + +  
Sbjct: 570 ERFEKTDAFIQGAGLGLPICRSIMEHMNGTIEVTSTVNKGSTFTVVFP 617


>gi|120603892|ref|YP_968292.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris DP4]
 gi|120564121|gb|ABM29865.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris DP4]
 gi|311232452|gb|ADP85306.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris RCH1]
          Length = 368

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 16/233 (6%), Positives = 62/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + ++      +  L     L + + H + +P+ ++   L  L+    ++ +  +   + +
Sbjct: 127 LEESHETLRQTEKLALVGKLAAGVAHSVRNPLTSVKLRLFSLERSLTLDTQQREDFEVIA 186

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKI 109
                    +     ++      +               +     + + +VQ+       
Sbjct: 187 DEIRHLDAIVSNFLEFSRRPKLRMQTVSPSDVVDNTLQLLKHRIESFNVQVQLHRAERLP 246

Query: 110 DLSRERAKILLNLFM---VAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFP 161
            +  +  ++   L      A  ++         +    +       +  +  +G      
Sbjct: 247 VVKGDPEQLKEALVNLVLNACEAMGYDGRLDITEERGIINPLGRAVVIRIADSGPGVPI- 305

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++   I      +  +   +       +  E+   L             A+L 
Sbjct: 306 DRRDDIFQPFFSTKEEGTGLGLPIAKSIFEEHGGWLHLHSAPGRGATFVAVLP 358


>gi|148263295|ref|YP_001230001.1| osmosensitive K+ channel signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146396795|gb|ABQ25428.1| osmosensitive K+ channel signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 889

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           ALL S + HD+ +P+ +I  +L  L +      +    +L+  +   A    +F+     
Sbjct: 671 ALLNS-VSHDLRTPLVSITGALGTLRDKEHRLSDTRRRELLDAAWEEAGRLNRFVGNLLD 729

Query: 73  YTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQ------VSWTGEKIDLSRERAKIL 119
            T          +    + D+       +      +                     ++L
Sbjct: 730 MTRLEAGAVTLKEEPCDIQDLVGCALAALEQRIGAREVKVQLPDGLPLVKLDMALMTQVL 789

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176
           +NL   A    P    + I+ +         +   G      +    F +     V    
Sbjct: 790 VNLLDNALKYSPHASIIDIAARVDDGRLTLEVSDRGPGVPESDLKRIFDKFYRIPVPEGA 849

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  ++  E  D   + + A L 
Sbjct: 850 GGTGLGLSICKGIVEAHHGKIRAENRDGGGLRVIATLP 887


>gi|84385848|ref|ZP_00988878.1| putative histidine kinase [Vibrio splendidus 12B01]
 gi|84379164|gb|EAP96017.1| putative histidine kinase [Vibrio splendidus 12B01]
          Length = 1059

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 382 EKAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILADTPLTPTQRDYVDTIETSSQ 441

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105
           + L  +     ++     ++ +      I + I                 V+  +     
Sbjct: 442 LLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDTP 501

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFP 161
              +       +IL+N    A      G       T+   D      F+++  G      
Sbjct: 502 ARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIKTLEQSDDNVTIRFAVRDTGIGIDKQ 561

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++                      +       L      ++  + +          LE
Sbjct: 562 QQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKGEGSCFYFDLE 619


>gi|319408627|emb|CBI82282.1| sensor histidine kinase [Bartonella schoenbuchensis R1]
          Length = 842

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/247 (8%), Positives = 63/247 (25%), Gaps = 34/247 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            K +   +  +  + A+  L   I HD  + + AI  S +LL             +  I+
Sbjct: 449 QKTLEDKMVQNQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRSSDPAHADLINIK 508

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGE 107
            ++  A   ++ +             +   ++   I +            K +       
Sbjct: 509 NNANRAAALVQQLLAFSRKQTLKPEKVDFTELLSDIRNLILSLLGSNIQLKIIHGRDLWN 568

Query: 108 KIDLSRERAKILLNLFMVAHASLPRG-----------------GKVTISVQDSKNENIFS 150
                    ++++NL + A  ++                     +       S      +
Sbjct: 569 VKVDQASFQRVIMNLVINARDAIAMPGGGLITIKTNNITKQQSAEFNYVGFVSGEYVQLT 628

Query: 151 LKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +   G          ++ +    +        +    V  +  +    +  +  +     
Sbjct: 629 ISDTGEGI-SAFVQEKMFEPFFTTKEVGKGTGLGLSMVYGIVKQTGGYIYCDSQEGKGTT 687

Query: 209 LSALLEK 215
               L +
Sbjct: 688 FHIFLPR 694


>gi|319646652|ref|ZP_08000881.1| sensor protein [Bacillus sp. BT1B_CT2]
 gi|317391240|gb|EFV72038.1| sensor protein [Bacillus sp. BT1B_CT2]
          Length = 455

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 55/215 (25%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           S + H++ +PI  I    ++ + +        Q + +    A      +   F  T    
Sbjct: 238 SSVAHELRTPITYIKGYTDVAMRDKLEPQARNQYLSIIKEEADNLNTLVDDLFLLTKLKQ 297

Query: 79  SLIGLGDIEQVIEDFIAVDKR--------------VQVSWTGEKIDLSRERAKILLNLFM 124
               +   +  +  F+  + +                +             ++++ NL  
Sbjct: 298 PGFQINKKQVHLYTFVKKEIQKAAVAFSEKRISVSFDIPTDLYVTVDEVRFSQVISNLLN 357

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSH 179
            A           ++    +++   ++   G      E    F +    +          
Sbjct: 358 NARQYSDPESTAAVTASKLEDQVKITVADEGCGIPEEERDYIFERFYRIDKSRSRQTGGT 417

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +   +  ++  +            L 
Sbjct: 418 GLGLAIVKEIVELHGGQIAAKNRTPKGSEFIITLP 452


>gi|295103286|emb|CBL00830.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 347

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +   E             +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDESHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +       +  E  +         L K
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341


>gi|229102160|ref|ZP_04232871.1| hypothetical protein bcere0019_13230 [Bacillus cereus Rock3-28]
 gi|228681360|gb|EEL35526.1| hypothetical protein bcere0019_13230 [Bacillus cereus Rock3-28]
          Length = 423

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKHLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLSISKTREFKREPFPINTFLREYIQQLLASEVFLHNISIDYNFSNELDDILVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQITSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L            +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNQ-AGTTFTISIP 409


>gi|221210649|ref|ZP_03583629.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221169605|gb|EEE02072.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 1001

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 55/246 (22%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L    + A           + + H+I +P+ AI  +LEL+    +     + +
Sbjct: 499 RKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAPTERRRL 558

Query: 54  RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97
              + S+                            D    L DI        +       
Sbjct: 559 DTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLELR 618

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKI 153
            RV        +       +I+ NL   A     RG     + +             +  
Sbjct: 619 CRVAPELADGYVGDPVRLRQIMSNLVDNAIKFTERGSVSIDAQRVVRSAGGARVEIRIAD 678

Query: 154 NGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G         T                    +       +A      L  +  +     
Sbjct: 679 TGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHGDLTVDSREGEGTT 738

Query: 209 LSALLE 214
           +   L 
Sbjct: 739 MCVTLP 744


>gi|52079559|ref|YP_078350.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52784923|ref|YP_090752.1| hypothetical protein BLi01151 [Bacillus licheniformis ATCC 14580]
 gi|52002770|gb|AAU22712.1| two-component sensor histidine kinase [Bacillus licheniformis ATCC
           14580]
 gi|52347425|gb|AAU40059.1| putative protein [Bacillus licheniformis ATCC 14580]
          Length = 455

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 55/215 (25%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           S + H++ +PI  I    ++ + +        Q + +    A      +   F  T    
Sbjct: 238 SSVAHELRTPITYIKGYTDVAMRDKLEPQARNQYLSIIKEEADNLNTLVDDLFLLTKLKQ 297

Query: 79  SLIGLGDIEQVIEDFIAVDKR--------------VQVSWTGEKIDLSRERAKILLNLFM 124
               +   +  +  F+  + +                +             ++++ NL  
Sbjct: 298 PGFQINKKQVHLYTFVKKEIQKAAVAFSEKRISVSFDIPTDLYVTVDEVRFSQVISNLLN 357

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSH 179
            A           ++    +++   ++   G      E    F +    +          
Sbjct: 358 NARQYSDPESTAAVTASKLEDQVKITVADEGCGIPEEERDYIFERFYRIDKSRSRQTGGT 417

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +   +  ++  +            L 
Sbjct: 418 GLGLAIVKEIVELHGGQIAAKNRTPKGSEFIITLP 452


>gi|17230584|ref|NP_487132.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132186|dbj|BAB74791.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1290

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 2    AKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
             +     +    +  +     + + H++ SP+  I    +LL     +    ++ +++I 
Sbjct: 907  EQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQALEVIE 966

Query: 55   LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
             ++      +  +                +VD +  +      V     +    +Q   T
Sbjct: 967  RNAKLQARLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAESKSIHIQTELT 1026

Query: 106  GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +  +     +++ NL   A    P GG++ +S++   +     ++  G       
Sbjct: 1027 SHVCRVEGDPNRLQQVVWNLLTNAVKFTPEGGQIEVSLERVGSLAHIQVRDTGKGISLDF 1086

Query: 163  ---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                F +    +           +    V  L   +   +      +      +  L 
Sbjct: 1087 LPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGAVQVTSPGEGLGTTFTVKLP 1144


>gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 1347

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
            + +     L +        + + H++ +P+ +I    E L E         + + ++ I 
Sbjct: 835  LHRANAELLRAARTKDEFLANMSHELRTPLNSILALSESLLEELYGPLRDQQQKAIRAIE 894

Query: 55   LSSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
             S    +  +  +        +            D       + +       +   +Q+ 
Sbjct: 895  ASGRHLLALINDVLDLAKIEANRIELVKEVVAASDVCEASMALVKEQATKKQIHLSIQLD 954

Query: 104  WTGEKIDLSRER-AKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARF 160
                +      R  +IL+NL   A    P G    + ++   ++    F++   G     
Sbjct: 955  DPHARFVADPRRLKQILVNLLSNAVKFTPAGGAVSLQVTTDTTQGTIAFTVSDTGIGIAE 1014

Query: 161  PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   ++    V          +   +    V  L   +  ++  E +       +  L 
Sbjct: 1015 EDLS-RLFQPFVQLDSGLSRQHEGTGLGLVLVRRLVELHGGKVEVESMPGVGSRFTVTLP 1073


>gi|329922504|ref|ZP_08278108.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328942142|gb|EGG38422.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 460

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 63/243 (25%), Gaps = 31/243 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQL 52
           M + +   +          S + H++ +P+ AI    + L E   E+         ++Q 
Sbjct: 220 MGRQLHDYIQYQK---QFVSNVSHELKTPLAAIRGFSQYLVEGENENKELQKVYAHLLQE 276

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----------------VIEDFIA 95
               +      L   R     +  ++      +                    ++     
Sbjct: 277 SDRLTRLINELLLLSRFDKAGSNELEVEKTEMNELIQQVATSLGAKAKEKGIEIMFREAE 336

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            +   ++             +  + NL   A         + + +  + +E +  ++  G
Sbjct: 337 AEPVDKLLTRVHANVNPMLMSHAIANLVDNAIKYSGSPSLIELKLTHTPSEVVIRIRDQG 396

Query: 156 NLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 E      +       ST +   +       +       +  E        ++ +
Sbjct: 397 IGIAGDELERVQERFYRAKNASTANGSGLGLSICKEIVERFNGYIDMESQIGEGTTVTIV 456

Query: 213 LEK 215
           L +
Sbjct: 457 LPR 459


>gi|319780214|ref|YP_004139690.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317166102|gb|ADV09640.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 594

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 77/248 (31%), Gaps = 38/248 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + +++      + + H++ +P+ ++ +++E L           +M +I+   
Sbjct: 348 MTNALYARIEAIES---FAADVSHELKNPLTSLRSAVETLPLAKNDDSRGRLMDIIQHDV 404

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
                 +  +  A            G+VD    + D+  V  +     K V++ +     
Sbjct: 405 RRLDRLITDISDASRLDAELAREDAGTVDLKKFITDLVAVSREATRNKKAVEIEFKAAKL 464

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLA 158
                    +       +++ NL   A + +P   G +++S+  +   NI ++  NG   
Sbjct: 465 PQGVKGYVVVGHDLRIGQVITNLIENARSFVPEDHGHISLSLARAGKFNIVTVDDNGPGI 524

Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD------HN 206
              +   +I +                 +       +   +   L  E I          
Sbjct: 525 -RADNIDRIFERFYTDRPAGEAFGQNSGLGLSISRQIVEAHGGTLTAENIPGTKPGEIKG 583

Query: 207 VVLSALLE 214
                 L 
Sbjct: 584 ARFVVTLP 591


>gi|307318523|ref|ZP_07597957.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83]
 gi|306895863|gb|EFN26615.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti AK83]
          Length = 869

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60
           +N       M+ V  L   I HD  + + AI  S +  LL     +     L+ +   + 
Sbjct: 468 ENQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRNAN 527

Query: 61  II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        ++    +GD+  +++     + +V+V +  +   +  +
Sbjct: 528 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPVKTD 587

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156
                ++LLNL + A  ++P GG +T+  ++                ++  +  +   G 
Sbjct: 588 LGQFEQVLLNLAVNARDAMPAGGIITLRTRNLPASEVAALGRRELPEEDFVMVEVSDQGT 647

Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I +    +        +    V  +  ++   + PE           LL 
Sbjct: 648 GI-PPEIMDKIFEPFFTTKDVGKGTGLGLSMVYGIVKQSGGYIYPESEIGSGTTFRILLP 706

Query: 215 K 215
           +
Sbjct: 707 R 707


>gi|298377088|ref|ZP_06987042.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266072|gb|EFI07731.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 769

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 50/229 (21%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     LL E    +E  +   +   + 
Sbjct: 537 LRDKEKIE-ESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCHSEETREFCEIIETNN 595

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               M   +           L    Q                  
Sbjct: 596 ELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLYCEIPEQDC 655

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ N    A     +G       +       F +K  G           
Sbjct: 656 VIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDG-LYFYVKDTGKGIERKNLPHV 714

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   + I    +       +      ++  E  +         + 
Sbjct: 715 FERFAKFDSFIQGTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763


>gi|326789157|ref|YP_004306978.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326539921|gb|ADZ81780.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 395

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 65/233 (27%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIR 54
           M   I   +          S + H++ +P+  I    ++L+  G ++  +       +  
Sbjct: 164 MMDRIQVYVERQK---QFASDVSHELRTPLAIIQGYADMLERWGKDNPQILEESISSIAE 220

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            ++    +  K + L+     ++   I   D+  +  D +     +  +           
Sbjct: 221 ETANMNTLLEKLLFLSRSDKHTLKVDINTIDLSALCNDILRETSFIDDAHQLISKVSPNV 280

Query: 115 RAK--------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-- 164
             K        ++  L   A    P GG +T+    +    + S+K  G           
Sbjct: 281 MLKGDSALIKELIRILVDNALKYTPEGGSITLGCATTNQNIVLSVKDTGIGIPKEHIHKL 340

Query: 165 -TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +           +       +A  ++ ++      D          
Sbjct: 341 FERFYRVDEARNKNTGGTGLGLAIAHEIAETHQAKIFVNSDIDEGTEFVIFFP 393


>gi|229125843|ref|ZP_04254868.1| hypothetical protein bcere0015_3070 [Bacillus cereus BDRD-Cer4]
 gi|228657501|gb|EEL13314.1| hypothetical protein bcere0015_3070 [Bacillus cereus BDRD-Cer4]
          Length = 402

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 183 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 237

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 238 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 297

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 298 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 356

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 357 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 400


>gi|150009171|ref|YP_001303914.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149937595|gb|ABR44292.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 769

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 50/229 (21%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     LL E    +E  +   +   + 
Sbjct: 537 LRDKEKIE-ESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAETCHSEETREFCEIIETNN 595

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               M   +           L    Q                  
Sbjct: 596 ELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLYCEIPEQDC 655

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ N    A     +G       +       F +K  G           
Sbjct: 656 VIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDG-LYFYVKDTGKGIERKNLPHV 714

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   + I    +       +      ++  E  +         + 
Sbjct: 715 FERFAKFDSFIQGTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763


>gi|158521371|ref|YP_001529241.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfococcus oleovorans Hxd3]
 gi|158510197|gb|ABW67164.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfococcus oleovorans Hxd3]
          Length = 403

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 72/235 (30%), Gaps = 26/235 (11%)

Query: 5   ICFNLSSMD-LVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEV--------- 49
           +   +++MD L +L  L + + H+I +P+  +      + L+ E     +          
Sbjct: 131 MEQQMTAMDRLASLGTLSTGVAHEINNPLAMMREAAGYMRLVLEKEDMVQWPGKTGLAKG 190

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQ 101
           ++ I             +           +   + ++     + +  + +          
Sbjct: 191 LEKIEKGIERIRRITHLLLGFVRPADHACARTDVKELVSESIELVTKEMQGKQIAVDRKM 250

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
               G          ++++NL   A  ++ R G +T+S+ +++     ++   G      
Sbjct: 251 DDTEGVAWTDPYALRQVMINLLTNAVHAIQREGTITVSLSEAEGCLAIAVSDTGVGI-PG 309

Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +    +        +  Y    +      R+  +         +  + 
Sbjct: 310 ENLNKIFEPFFSTKPSDKGTGLGLYVSRGIVERLDGRIGVKSAVGRGTTFTVEIP 364


>gi|119487927|ref|ZP_01621424.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119455503|gb|EAW36641.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1524

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 60/240 (25%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
            + +       +  L     + + H++ +P+ +I    E+L +         +   +  I 
Sbjct: 1122 LRRTNAQLERATRLKDEFMANMSHELRTPLYSILGLSEVLQQEVYGVLNAEQLRSLSTIE 1181

Query: 55   LSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQV 102
             S    +  +                   +V+           ++          + +  
Sbjct: 1182 QSGQHLLELINEILDLSKIESGKMELQLSAVNLTQLCQSSLNFVKPQADQKNIQLQFIAT 1241

Query: 103  SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARF 160
                          ++L+NL   A    P G  +   I  +   N    S+   G     
Sbjct: 1242 PVPVIINIDELRIRQVLINLLSNAVKFTPEGNHILLKIETEPQNNCVHLSVTDTGIGI-A 1300

Query: 161  PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   ++ +  V              +    V  +   +   +  +            L 
Sbjct: 1301 PEDQVRLFEPFVQIDSSLSRRYSGTGLGLALVRQITQMHAGTVSLDSEVGRGSTFIVTLP 1360


>gi|94264431|ref|ZP_01288220.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455121|gb|EAT05343.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 57/250 (22%), Gaps = 37/250 (14%)

Query: 2   AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
            +     + + +L           +   + + H+I +P+  +     LL    +  E + 
Sbjct: 143 RRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTAEQLS 202

Query: 52  LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
            +++   S                       +         +   + L    Q     +A
Sbjct: 203 YVKVIITSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLA 262

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIF 149
           +   +                ++LLNL   A      G                +    F
Sbjct: 263 LTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSCYF 322

Query: 150 SLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++K +G      +    F +    +           +       L       +  E    
Sbjct: 323 AVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVG 382

Query: 205 HNVVLSALLE 214
                   + 
Sbjct: 383 KGSTFWFTVP 392


>gi|73539982|ref|YP_294502.1| sensor histidine kinase [Ralstonia eutropha JMP134]
 gi|72117395|gb|AAZ59658.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Ralstonia eutropha JMP134]
          Length = 659

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDE------VGIEDE 48
           +       + +  L AL  + + I H++  P+ A+    +    LL+        G    
Sbjct: 411 LRAAQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRVLLERGQLAAAEGNLSA 470

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----FIAVDKRVQVSW 104
           +  L             F   A     SV     +  +  ++             +    
Sbjct: 471 IADLTERMGKITGQLKLFAGKARPPRRSVLVSAAIEHVLALLAPRLTGVTLHVDGLHALP 530

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160
                    +  ++LLNL   A  ++         +        +     ++ NG     
Sbjct: 531 NIAVRADELKLEQVLLNLIGNALDAIASAAPAQGRIDVSVSADASAVTIQVRDNGTGISP 590

Query: 161 PEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   ++ +    +        +       +  E   +L     D    V + +L +
Sbjct: 591 EDLP-RLFEPFFTTKETGQGLGLGLAISSSIVREFGGQLSAANADGGGAVFTIVLTR 646


>gi|15965555|ref|NP_385908.1| putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307302675|ref|ZP_07582431.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti
           BL225C]
 gi|15074736|emb|CAC46381.1| Putative sensor histidine kinase transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306903039|gb|EFN33630.1| multi-sensor hybrid histidine kinase [Sinorhizobium meliloti
           BL225C]
          Length = 869

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60
           +N       M+ V  L   I HD  + + AI  S +  LL     +     L+ +   + 
Sbjct: 468 ENQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRNAN 527

Query: 61  II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        ++    +GD+  +++     + +V+V +  +   +  +
Sbjct: 528 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPVKTD 587

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156
                ++LLNL + A  ++P GG +T+  ++                ++  +  +   G 
Sbjct: 588 LGQFEQVLLNLAVNARDAMPAGGIITLRTRNLPASEVAALGRRELPEEDFVMVEVSDQGT 647

Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I +    +        +    V  +  ++   + PE           LL 
Sbjct: 648 GI-PPEIMDKIFEPFFTTKDVGKGTGLGLSMVYGIVKQSGGYIYPESEIGSGTTFRILLP 706

Query: 215 K 215
           +
Sbjct: 707 R 707


>gi|47566186|ref|ZP_00237214.1| histidin [Bacillus cereus G9241]
 gi|47556739|gb|EAL15070.1| histidin [Bacillus cereus G9241]
          Length = 466

 Score =  111 bits (278), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 63/215 (29%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKICISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +    S+K  G             +    +          
Sbjct: 364 NAIRYTNQNGAIMITLRQIDDYCELSIKDTGIGIDTEHLENLGQRFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +S  L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWRIESAKGNGTTVSIKLK 458


>gi|289624477|ref|ZP_06457431.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|298487714|ref|ZP_07005755.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298157806|gb|EFH98885.1| Signal transduction histidine kinase [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330870201|gb|EGH04910.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 697

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +A+       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 427

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      +    +
Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546

Query: 210 SALLEK 215
              L +
Sbjct: 547 CLYLPR 552


>gi|220909132|ref|YP_002484443.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
 gi|219865743|gb|ACL46082.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7425]
          Length = 1255

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 57/216 (26%), Gaps = 21/216 (9%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            + + H++ SP+ AI    +LL     E  +++    +    +     +         +  
Sbjct: 1035 AVVSHELRSPLNAILGWAKLLQTRSFEPAMLRRGLETIERNVETQVQLIEDLLDISRMVR 1094

Query: 80   LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------------LSRERAKILLNLF 123
                 +   V    +  +  + +  +                           +I  NL 
Sbjct: 1095 GTLRLNFMPVNLVALVEETLLNLQPSITAKQLDLGYYPGSEEIRVAGDLHRLQQIFANLL 1154

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST-IDSH 179
              A    P GG+V + + +   +    +   G           F +   GN      +  
Sbjct: 1155 TNAIKFTPAGGQVEVRLVNCGAQVQIMVIDTGKGIAADFLPYIFDRFRQGNDAREPQEGL 1214

Query: 180  DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             +    V  L   +K  +             +  L 
Sbjct: 1215 GLGLAIVRHLVELHKGTIQAASAGPGQGATFTVTLP 1250


>gi|189424887|ref|YP_001952064.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
 gi|189421146|gb|ACD95544.1| multi-sensor signal transduction histidine kinase [Geobacter
           lovleyi SZ]
          Length = 503

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 75/240 (31%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIR 54
           ++   +   M+    L   I HD  + +  I  + ++L         +     E+++ + 
Sbjct: 237 EDQLRHAQKMEAAGQLAGGIAHDFNNILQIISGNTQILQYDLKQTNPDPPQLLEILKAVE 296

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +      L F R     +  ++    + D + + +  +  +  +Q+      + ++ +
Sbjct: 297 RGTALTRSMLAFSRKQTINSIPLELNQLVKDSQLLAQKLLQKNTTLQLDLAETALIITAD 356

Query: 115 R---AKILLNLFMVAHASLPRGGKVTI---------------SVQDSKNENIFSLKINGN 156
                ++L NL   A  ++P GG +TI                 +      +  ++  G 
Sbjct: 357 EVLLQQVLFNLITNARDAMPTGGTITIATAERLLDEQSTGGAKDRVPGTYAVLMVQDTGQ 416

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +    V     ++   +  E         S  L 
Sbjct: 417 GI-PEEIRQKIFEPFFTTKEVGKGTGLGLAMVYGTVKQHGGFVQVESKAGLGSCFSVFLP 475


>gi|149927836|ref|ZP_01916087.1| PAS [Limnobacter sp. MED105]
 gi|149823458|gb|EDM82689.1| PAS [Limnobacter sp. MED105]
          Length = 1085

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        ++        + + H+I +P+ AI   L+LL++  ++      +     +A
Sbjct: 685 LTDRTQQAEAASKAKGAFLANMSHEIRTPMNAIMGLLQLLEDTDLQARQRDYLSKIGSAA 744

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSW 104
            + L  +      +    + + L     +++  ++                       + 
Sbjct: 745 DVLLNVLNDILDISRVEANKLELSHSRFLLDQVLSKATDLFAYRAEEKAIQLYCSKDANC 804

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                      A+IL NL   A     +    + +       +  FS+K  G      E+
Sbjct: 805 PVSLKGDRLRLAQILNNLLSNALKFTEKGRIHLQVQSVADGKQLQFSVKDTGIGMN-EEQ 863

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +                   +       L      ++  E            
Sbjct: 864 CAALFQPFSQVDDSSSRRYGGAGLGLSICKNLVELMGGQIWVESTPGLGTTFHFT 918


>gi|126737848|ref|ZP_01753578.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. SK209-2-6]
 gi|126721241|gb|EBA17945.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. SK209-2-6]
          Length = 351

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 19/244 (7%), Positives = 60/244 (24%), Gaps = 32/244 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSM 58
           ++     +  +     + + H++ +P+ A+   +E L     ++    D  + ++   + 
Sbjct: 108 DVSEREQAGQMRRDFVANVSHELRTPLTALVGFIETLQGPAREDSNARDRFLSIMSDEAA 167

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------------VQ 101
                +  +                     +    +    +                 V+
Sbjct: 168 RMNRLVGDLLTLNRVESRERQRPKERLDLALHLQSVLKTMQPLAENNSVTLNLGLPEGVE 227

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGN 156
                E      +  ++ +NL   A              +             +++ NG 
Sbjct: 228 SPDAYEIAGDPDQLLQVFINLVENAIKYGGDHVEVTLEFLERDRSLRGPAVQVTVRDNGQ 287

Query: 157 LA---RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                  P    +    +      +    +    V  +   ++ RL            + 
Sbjct: 288 GIDPIHLPRLTERFYRADSHRSRELGGTGLGLAIVKHIISRHRGRLRINSERAVGSTFTV 347

Query: 212 LLEK 215
           LL +
Sbjct: 348 LLPR 351


>gi|17230389|ref|NP_486937.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17131991|dbj|BAB74596.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 646

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 60/241 (24%), Gaps = 31/241 (12%)

Query: 4   NICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
                L    L                + + HD+ SP+ AI    +LL    +++     
Sbjct: 402 ERNQLLQLEKLARAEAEAANHTKDEFVAMVSHDLRSPLNAILGWSQLLRTRQLDETTFTR 461

Query: 53  IRLSSMSAII---------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
              +                         ++L F        +    +          + 
Sbjct: 462 ALETIERNAQSQSKLLEDLLDMSRVLRGKLQLEFCQVDLAAIIGVAIETAYPSAKAKNIH 521

Query: 98  KRVQVSWTGE-KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            +  +  +            ++L NL   A    P  G++T+ +  + +E   ++   G 
Sbjct: 522 LKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYTDSEAHITVTDTGI 581

Query: 157 LARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSAL 212
             +       F +    + +       +       L   +   +      +      +  
Sbjct: 582 GIKSEFLPYVFDRYRQADCQHKQHGLGLGLAIARYLIELHGGAIHVTSPGEGQGTTFTIK 641

Query: 213 L 213
           L
Sbjct: 642 L 642


>gi|163847015|ref|YP_001635059.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222524838|ref|YP_002569309.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163668304|gb|ABY34670.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222448717|gb|ACM52983.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 796

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 61/231 (26%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV------MQL 52
            ++      S  L A+    + I H+  + +  +    +L L +  +E +       +  
Sbjct: 417 QESQTELGRSAKLAAVGTFAASIAHEFNNLLSGMLGYAQLGLADDDVEMKNEALKVVLDT 476

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKI 109
            +         L F R         D    +     ++E  +         Q+      I
Sbjct: 477 CKRGRSITGSLLTFARRRDSRRELSDLREVVDGTLTLMEIELRKHNIRVVRQIDMVPPTI 536

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIV 168
             S + +++ LNL   A  ++   G        S N      +   G          QI 
Sbjct: 537 CDSGQISQVFLNLLTNARDAMKPQGGTLTVSLTSDNEWITLQVTDTGCGI-PEAVRRQIF 595

Query: 169 DGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V +           +       +   +      E        ++  L 
Sbjct: 596 QPFVTTKNTTGSQSGTGLGLAVSYGIIKNHNGHFDVESEVGKGTTMTIRLP 646


>gi|330844471|ref|XP_003294148.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum]
 gi|325075445|gb|EGC29332.1| hypothetical protein DICPUDRAFT_51346 [Dictyostelium purpureum]
          Length = 952

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     +++  + +   + I H+I +P+  +    E+L +    +     I  +   +
Sbjct: 278 LMEARDQAVAATKIKSQFLATISHEIRTPLNGVIGMAEMLLKTSPLNTEQHDIAETIFGS 337

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------------S 103
              L  +         +++     ++ +             +                  
Sbjct: 338 GELLLSITSDILDFSKIEASRLELEMIEFDFIGCLEGIAKTIGVSINNKPIEIVTLFDPD 397

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
                +       +I+LN+   A     +G  +        + +  +    ++ +G    
Sbjct: 398 IPHRLVGDPNRLVQIMLNMGTNAVKYTEKGHIIFKVSVLSRKHNWCKVKIGIEDSGIGI- 456

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSAL 212
             E+   + +                 +       LA      +L E        + S  
Sbjct: 457 KEEQRKHLFEPFHQIDASTTRKYGGSGLGLAISSKLAKLMGGSVLLEKSTPGVGSLFSVT 516

Query: 213 LE 214
           LE
Sbjct: 517 LE 518


>gi|319786168|ref|YP_004145643.1| multi-sensor signal transduction histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317464680|gb|ADV26412.1| multi-sensor signal transduction histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 533

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 61/224 (27%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI  +++LL E       +  ++Q+I    M   
Sbjct: 303 RAESLTLAAMGRFSASLAHEIRNPLAAISYAVQLLQESRGMDDADRRLLQIIHQQCMRTN 362

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113
             ++ +        +    + L    Q   +       ++               +    
Sbjct: 363 GIVENVLGMARRERAKPEHVDLTGFVQRFVEDYRATMPIETDTLEAGLPARAVPALVDPA 422

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSLKINGNLARFPEKFTQIVDG 170
              +IL  L   A        +               +  +   G          Q+   
Sbjct: 423 HLQQILTALVQNALRYGRMPDEPARVKVRVSTQDRNAVVEVMDRGPGIPEGTV-AQLFRP 481

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    LA  N+  L    +          L 
Sbjct: 482 FFTTSEHGTGLGLYIAGELARANQATLRYVPVPGGGACFRITLP 525


>gi|315646523|ref|ZP_07899641.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
 gi|315278166|gb|EFU41486.1| PAS/PAC sensor signal transduction histidine kinase [Paenibacillus
           vortex V453]
          Length = 1001

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 57/239 (23%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK                + + H++ +P+  I   +ELL    ++++      +   S+ 
Sbjct: 755 AKENAERADQAK--TEFLTMMSHELRTPMNGIIGMIELLKTTELDEDQRNYTDILMESSG 812

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +                 +  +D    L  I  +               +  +  
Sbjct: 813 SLLHILNEILDFSKIETGNMTLNSEPIDVQALLESIVDLFSAKAKEKGLLLSCSINTTVP 872

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLARF 160
              I       ++L+NL   A      G               +    F +K  G     
Sbjct: 873 DVIIGDGLRLRQVLVNLISNAIKFTNEGSISMSVEGLHRTGTQEFTLAFQVKDTGIGIPA 932

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++    +       ++        +       L       +  E  +         + 
Sbjct: 933 EQQHQLFMSFSQLHPSLNRKYGGTGLGLAISKKLVELMGGVIGVESREQLGSSFYFTIP 991


>gi|303246216|ref|ZP_07332496.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
 gi|302492279|gb|EFL52151.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
           JJ]
          Length = 928

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 68/248 (27%), Gaps = 35/248 (14%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L    L A           +R+ H+I +P+ +I    ELL+E  ++ +    +
Sbjct: 267 RKMVEQELHRAKLAAEAATRAKSEFLARMSHEIRTPMNSILGMSELLEETSLDFDQKNYV 326

Query: 54  RLSSMSAIIRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           +    S  + L  +                       +D + G+G I  +      +   
Sbjct: 327 QTLHSSGEMLLAIINDILDFSKIEAGQVDLECVPFDLIDLVEGIGRILGLKAQEKGLKLT 386

Query: 100 VQVSWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKI 153
             V+    +          +IL+NL   A      G          +   K   + ++  
Sbjct: 387 CWVAPEVHRHVLGDPTRLQQILINLLSNAIKFTEHGEVTLHILPGPLPADKETILVTVSD 446

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      ++ +     +              +       L       +  E  +     
Sbjct: 447 TGIGIPKDKQESVFESFSQADTSTTRKFGGTGLGLAISKKLIELMDGGIRIESNEGAGTT 506

Query: 209 L--SALLE 214
              +  L+
Sbjct: 507 FLLTVRLK 514


>gi|302662555|ref|XP_003022930.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
 gi|291186903|gb|EFE42312.1| hypothetical protein TRV_02917 [Trichophyton verrucosum HKI 0517]
          Length = 2406

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 62/238 (26%), Gaps = 29/238 (12%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
            N+     +    ++  + I HD+ +P+  +    ELL     +   +  V  +   +   
Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1934

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106
              +    +  +    G +   I   +                  +    ++    +    
Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTIEDLDSIDPDL 1994

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
              +       +I +NL   ++   P G     ++ +            +   G      +
Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2054

Query: 163  KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
               ++             +     +       +  +    R+  +  +     ++  L
Sbjct: 2055 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|302504154|ref|XP_003014036.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
 gi|291177603|gb|EFE33396.1| hypothetical protein ARB_07756 [Arthroderma benhamiae CBS 112371]
          Length = 2418

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 62/238 (26%), Gaps = 29/238 (12%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
            N+     +    ++  + I HD+ +P+  +    ELL     +   +  V  +   +   
Sbjct: 1883 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1942

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106
              +    +  +    G +   I   +                  +    ++    +    
Sbjct: 1943 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLNTIEDLDSIDPDL 2002

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
              +       +I +NL   ++   P G     ++ +            +   G      +
Sbjct: 2003 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2062

Query: 163  KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
               ++             +     +       +  +    R+  +  +     ++  L
Sbjct: 2063 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2119


>gi|297568711|ref|YP_003690055.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924626|gb|ADH85436.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 510

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 52/241 (21%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      S+    +   + + H++ +P+ AI    ELL E   E    ++        
Sbjct: 255 LQQAKETAESANRAKSRFLANMSHELRTPLNAIIGYSELLLEDASEWGEWEISEDLEKIK 314

Query: 61  IIRLKFMR------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                 +                                 +  I  ++       +    
Sbjct: 315 SAGQHLLMLISDILDISKIEAGRLDLHLEEVQWEPLLNDVVNTIRPLVVKNNNRLQVDTP 374

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLAR 159
                    + +  ++L NL   A      G  +          +    F++  +G    
Sbjct: 375 PEEITLFTDATKLRQVLYNLLSNATKFTTDGEIMLKASLCRLRRQPRLEFAVSDSGIGM- 433

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+  +I                   +               +            +  L
Sbjct: 434 SEEQLAKIFQPFTQADSSTTRKYGGTGLGLVISRYFCRMMGGDIKATSRPGAGATFTVSL 493

Query: 214 E 214
            
Sbjct: 494 P 494


>gi|209916101|gb|ACH90385.1| two-component osmosensing histidine kinase [Stemphylium vesicarium]
          Length = 1329

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 60/243 (24%), Gaps = 32/243 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 727 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 786

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 787 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 846

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 847 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAPEQECGPDHYVFQFAVSDTG 906

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 907 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 966

Query: 211 ALL 213
             L
Sbjct: 967 FTL 969


>gi|296131169|ref|YP_003638419.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
 gi|296022984|gb|ADG76220.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
          Length = 365

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 58/216 (26%), Gaps = 18/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFG 72
             +   H++ +P+  I    EL D    +D       +  IR  +      +  + L   
Sbjct: 150 FVADAAHELRTPVTTIRGYAELFDRGARDDPQELPKVLSRIRSEAERMGDLVDDLVLLAR 209

Query: 73  YTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                +   G  D+  +  D               V        +       ++L NL  
Sbjct: 210 LDAERELEHGPVDLTVLAHDAAMDARAADGERTVVVDEDGPVVVLGDEAALRQVLANLLT 269

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSH 179
                 P G + T+ V+      +  +  +G           F +    +          
Sbjct: 270 NVTRHTPPGTRATVRVRADGPHAVLHVADDGPGLAPEHREHVFERFYRADAGRARATGGA 329

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +AH +   +           ++  L +
Sbjct: 330 GLGLSIVAAIAHAHGGTVAAVPTPGGGTTITLQLPR 365


>gi|168184825|ref|ZP_02619489.1| sensory box histidine kinase [Clostridium botulinum Bf]
 gi|182672089|gb|EDT84050.1| sensory box histidine kinase [Clostridium botulinum Bf]
          Length = 615

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            KNI     S     L+    S I H++ +P+  I  +++LL       +   +D+ ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKQDKYLKL 405

Query: 53  IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103
           I+ +    +  +  +         Y         +          V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      +      GG + + ++D        +K  G     
Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGHIFVKIKDCGENVYIHVKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +K  +  +            L 
Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLP 584


>gi|166365091|ref|YP_001657364.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166087464|dbj|BAG02172.1| two-component sensor histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 434

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 67/232 (28%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55
               L   +L  L   L S I H+  +P+  I ++ +LL+      +      + ++   
Sbjct: 200 HRLLLQEKELSDLKIQLFSMISHEFRTPLTVILSASQLLENGLKDADQSSRKNLYRIQSS 259

Query: 56  SSMSAIIRLKFMRLAF-------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             +        + L              +D      ++ +  +     +  ++    G  
Sbjct: 260 VKLMNQFLTDILILTRAESGNLSCQLEPLDIEAFCLNLVEDFQFINKNNTPIKFVSQGLM 319

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
           I    +   +   L      A    P G  +++ +    +  +F ++ +G      +   
Sbjct: 320 IRPYLDEKLLYSILSNLLLNAIKYSPTGAGISLILWKDSDRIVFQVRDHGIGIAEEDRGK 379

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +     G     I    +    V      ++  +  +   D     +  L 
Sbjct: 380 IYEPFYRGQNVENIIGTGLGLAVVKKCVELHRGEIALDSQVDKGTSFTVKLP 431


>gi|254189618|ref|ZP_04896128.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254264527|ref|ZP_04955392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
 gi|157937296|gb|EDO92966.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254215529|gb|EET04914.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1710a]
          Length = 1014

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 630

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 631 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 751 TVTVALP 757


>gi|94264852|ref|ZP_01288627.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454673|gb|EAT04938.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 399

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/250 (9%), Positives = 57/250 (22%), Gaps = 37/250 (14%)

Query: 2   AKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
            +     + + +L           +   + + H+I +P+  +     LL    +  E + 
Sbjct: 143 RRLEEAAVQAEELARQAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLSEDLTAEQLS 202

Query: 52  LIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
            +++   S                       +         +   + L    Q     +A
Sbjct: 203 YVKVIKTSGEALLELINQILDFSKIEAGRLELDYRPFSPRELVQEVVLLLQPQAAAQNLA 262

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG------GKVTISVQDSKNENIF 149
           +   +                ++LLNL   A      G                +    F
Sbjct: 263 LTCEISPGIPAIAEGDPVRLRQVLLNLVGNAIKFTEVGGVAIELSPAPADPAAPEFSCYF 322

Query: 150 SLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++K +G      +    F +    +           +       L       +  E    
Sbjct: 323 AVKDSGIGIPAEKIDLLFQRFQQLDGSTCRKYGGTGLGLAICRRLVELMGGEVGVESEVG 382

Query: 205 HNVVLSALLE 214
                   + 
Sbjct: 383 KGSTFWFTVP 392


>gi|308174101|ref|YP_003920806.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|307606965|emb|CBI43336.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           DSM 7]
 gi|328552770|gb|AEB23262.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           TA208]
 gi|328912432|gb|AEB64028.1| two-component sensor histidine kinase [Bacillus amyloliquefaciens
           LL3]
          Length = 593

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 61/236 (25%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           M +          L     + + H++ +PI  +    E + +        + E+ Q+I  
Sbjct: 355 MTEERRL----DKLREDFIANVSHELRTPISMLQGYSEAIVDDIASTEEEKKEIAQIIYD 410

Query: 56  SSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S+     +  +              Y              +           +      
Sbjct: 411 ESLRMGRLVNDLLDLARMESGHTGLHYETVNLHEFLEKISRKFSGVAKEKGVSLTEDIAV 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            + +   +     ++  NL   A      GG V I+ Q  K+     +K +G+     + 
Sbjct: 471 SQPECVFDEDKMEQVFTNLIDNALRHTESGGSVHIAAQTVKDGLKIDIKDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +   +      D     +  + 
Sbjct: 531 PFIFERFYKADKARTRGRAGTGLGLAIVKNIVEAHGGSIAVHSSIDKGTAFTFYIP 586


>gi|296184967|ref|ZP_06853378.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296050749|gb|EFG90172.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 473

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 26/229 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMSAI 61
             L     + I H++ +P+  I  +++L                    + + + +    +
Sbjct: 204 EKLRTEFFANISHELKTPLNIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLL 263

Query: 62  IRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             +  +        +       + + +  + +I Q +  +I  +  +      E+  ++ 
Sbjct: 264 RLINNLIDSTEIDSKFIELNMVNCNIVNLVEEITQSVAKYINNNISITFDTDLEEKIIAC 323

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFT 165
           +  K+   +      +      GG + +++ D K+    ++K  G               
Sbjct: 324 DLDKVGRIILNLLSNSVKFTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRF 383

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + VD +     +   I    V  L   +K  +  E         +  L 
Sbjct: 384 RQVDKSFTRKNEGSGIGLSIVKSLVEMHKGSIFVESKYGIGTKFTIKLP 432


>gi|317052667|ref|YP_004113783.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316947751|gb|ADU67227.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 753

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 67/233 (28%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQ--- 51
           + +    N    +L +     + H+  +P+  I  S ELL +          DE +    
Sbjct: 515 LRQQEELN----ELKSTFVQMVSHEFRTPLAGIMGSAELLKKYLERLSPERRDEHLDTIL 570

Query: 52  ----LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                +       +           ++ S   L+ +    Q     I   +R+Q+ +   
Sbjct: 571 SGVQRMVFMMEEILALGAMDSGQTNFSPSPVDLVAMCRAIQDQLHSIFPGQRIQLDFRDI 630

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                 +      IL NL   A    P    V  S+ ++  E  F +   G      +  
Sbjct: 631 PTCAMLDESLLHHILTNLLSNALKYSPATSPVHFSIFNTTKELCFRVTDFGIGIPESDRG 690

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F     G+  S I    I    V      +   +  +   +     +  + 
Sbjct: 691 RLFEAFFRGSNASHIQGTGIGMMIVKRCLDLHNGTIQIQSKPNQGSTFTVTIP 743


>gi|288937602|ref|YP_003441661.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
 gi|288892311|gb|ADC60629.1| integral membrane sensor hybrid histidine kinase [Klebsiella
           variicola At-22]
          Length = 761

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L     M  V  L   + HD  + +  I  SLEL++    +   +     ++ 
Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R    +  +V     L ++ +++   +     +++           +
Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 506

Query: 115 RAKIL---LNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++    +NL M A  ++              +VT S    ++     +  +G+     
Sbjct: 507 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               ++ +    +        +    V     ++  R+  E        +   L +
Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621


>gi|255524740|ref|ZP_05391691.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255511513|gb|EET87802.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 330

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 70/229 (30%), Gaps = 26/229 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMSAI 61
             L     + I H++ +P+  I  +++L                    + + + +    +
Sbjct: 61  EKLRTEFFANISHELKTPLNIILGTIQLNKMIIENGENPINREKLINNINMEKQNCFRLL 120

Query: 62  IRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             +  +        +       + + +  + +I Q +  +I  +  +      E+  ++ 
Sbjct: 121 RLINNLIDSTEIDSKFIELNMVNCNIVNLVEEITQSVAKYINNNISITFDTDLEEKIIAC 180

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFT 165
           +  K+   +      +      GG + +++ D K+    ++K  G               
Sbjct: 181 DLDKVGRIILNLLSNSVKFTEPGGSIFVNIIDDKDYITITVKDTGIGIPQNKLNTIFDRF 240

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + VD +     +   I    V  L   +K  +  E         +  L 
Sbjct: 241 RQVDKSFTRKNEGSGIGLSIVKSLVEMHKGSIFVESKYGIGTKFTIKLP 289


>gi|218887082|ref|YP_002436403.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758036|gb|ACL08935.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 372

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 16/236 (6%), Positives = 59/236 (25%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + ++      +  L     L + + H I +P+ ++   L  L+        + E  +   
Sbjct: 128 LEESHETLRQTEKLALVGKLAAGVAHSIRNPLTSVKLRLFALERSLKLGPDQKEQQEDFE 187

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTG 106
           + +         +     ++      +            ++ +     + +  V V    
Sbjct: 188 VIAAEIRHLDAIVTNFLEFSRRPRLRMQPVSPSDVVDMTLQLLKHRLESFNVAVAVHRAE 247

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLA 158
               +  +  ++   L      A  ++         +    +       +  +  +G   
Sbjct: 248 RLPVVDGDAEQLKEALVNLILNACEAMGYDGTLDITEEKGIINPLGRAVVIRIADSGPGV 307

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++      +  +   +       +  E+   L              +L 
Sbjct: 308 -PQHIREEVFQPFFSTKEEGTGLGLPIARRIFEEHGGWLHLHSAHGKGATFVIVLP 362


>gi|165870288|ref|ZP_02214944.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|170705928|ref|ZP_02896390.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|190566438|ref|ZP_03019356.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227815223|ref|YP_002815232.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229604442|ref|YP_002866358.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|164714176|gb|EDR19697.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|170128930|gb|EDS97795.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|190562573|gb|EDV16540.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227007185|gb|ACP16928.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|229268850|gb|ACQ50487.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 346

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 112 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 168

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 169 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 228

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G+     +    
Sbjct: 229 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 288

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 289 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTECIVCIP 341


>gi|114570744|ref|YP_757424.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341206|gb|ABI66486.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 858

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 51/236 (21%), Gaps = 28/236 (11%)

Query: 4   NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                L + +   +   + I H+I +P+  I    ++L       +     R+   S   
Sbjct: 465 ERTRELEAANQAKSTFLANISHEIRTPLNGILGLAQVLRTTSRSKQRQDQARMIEESGET 524

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWTG 106
             + +      +      + L                                +  S   
Sbjct: 525 LTQLLNDVLDMSKIEAGKMELSPQVVDPARLFGDMHTLFQASAEAKSLDFSVEIDPSLPE 584

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
                     + L NL   A     +G     +    + +        +   G     PE
Sbjct: 585 RLEFDPLRVRQCLSNLLSNAIKFTSKGSVQLSARWHRETDQAGLLEIKVCDTGIGI-PPE 643

Query: 163 KFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           K   +     +S            +       LA      +  E         +  
Sbjct: 644 KLDTLFSPFTQSDAAIAGEFGGTGLGLSIARDLARLMGGDITAEATPGQGSTFTLT 699


>gi|94309174|ref|YP_582384.1| periplasmic sensor signal transduction histidine kinase
           [Cupriavidus metallidurans CH34]
 gi|93353026|gb|ABF07115.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Cupriavidus metallidurans CH34]
          Length = 668

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +       + +  L AL  + + I H++  P+ A+    +    LL+   ++        
Sbjct: 425 LRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRVLLERGQLDAATGNLSA 484

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107
           +  L             F   A     +V     +  + Q+I   +           G+ 
Sbjct: 485 IADLTERMGKITGQLKLFAGKARQRRNAVRVRAAIDHVLQLIAPRLGRVMLRVRGLDGDA 544

Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLAR 159
                     +  ++LLNL   A  ++   G     V      +       ++ NG    
Sbjct: 545 ADLAVWADELKLEQVLLNLVGNALDAIAAAGAEDGRVDIAVSATDETVTLVVRDNGPGI- 603

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P+   ++ +    +        +       +  E   +L    ++         L +
Sbjct: 604 APDALPRLFEPFFTTKEIGQGLGLGLAISSSIVREFGGQLTAGNVEGGGAEFVVTLRR 661


>gi|30261987|ref|NP_844364.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47527252|ref|YP_018601.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49184829|ref|YP_028081.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|167638312|ref|ZP_02396589.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|177650941|ref|ZP_02933838.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|30256613|gb|AAP25850.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47502400|gb|AAT31076.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49178756|gb|AAT54132.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|167513613|gb|EDR88982.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|172083402|gb|EDT68463.1| sensor histidine kinase [Bacillus anthracis str. A0174]
          Length = 351

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 117 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 173

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 174 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 233

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G+     +    
Sbjct: 234 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 293

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 294 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTECIVCIP 346


>gi|60680227|ref|YP_210371.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
 gi|60491661|emb|CAH06413.1| putative histidine kinase [Bacteroides fragilis NCTC 9343]
          Length = 389

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK      + +     L + + H+I +P+ AI     LL   D+   + E + LI+ ++ 
Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIIDDEKEQQEYIGLIQSNTE 213

Query: 59  SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106
             +  +  +              GS   L  L    ++     A    + ++W       
Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNA 273

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     +IL +L   A     +G       +    +  F +   G      +    
Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F + V  +  +      +      ++       +  E            + 
Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|332297791|ref|YP_004439713.1| PAS/PAC sensor signal transduction histidine kinase [Treponema
           brennaborense DSM 12168]
 gi|332180894|gb|AEE16582.1| PAS/PAC sensor signal transduction histidine kinase [Treponema
           brennaborense DSM 12168]
          Length = 397

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 78/238 (32%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHNSLELLDEV-----------GIED 47
            +     L  M+ L +L  L + + H+I +P+G+I   ++L+ +              E 
Sbjct: 147 QRRQETLLRRMEGLASLTNLAASVAHEIKNPLGSISIHIQLIQKAVKKARESGGTLPDEK 206

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKR 99
            + + + + +         +         V++ + L          +E  + +       
Sbjct: 207 FLEKYLNVVTEEIDRLNGIVVDFLFAVRPVNAELLLLDPNVLITQFLEFCMPELTEKHIE 266

Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           VQ     +   +  +     +++LNL   A  ++  GG + +S Q   +  + ++   G 
Sbjct: 267 VQTELMKDPPKILLDEKLFRQVVLNLIQNAEGAMSGGGMLLVSTQLKNDRFVINIADTGV 326

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +      +    V  +  E    +  +       + S  L 
Sbjct: 327 GMDEK-TSARIFEPYFTTKATGTGLGLTMVYKIIKEFSGDIQVQSFPGEGSLFSITLP 383


>gi|329908338|ref|ZP_08274851.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546735|gb|EGF31680.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 998

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 62/246 (25%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            +++   L    +VA           S + H+I +P+ A+     LL E  ++ +  +  
Sbjct: 334 REDVEVELKKAKIVAEQANAARGAFLSTVSHEIRTPMNAVIGMSGLLRETALDAQQEEFT 393

Query: 54  RLSSMSAIIRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVD 97
                SA   +  +                     +  S+          +  +  + + 
Sbjct: 394 VAIEDSANALMVIIDEILDFSRIDAGKLTIEATDCHLLSLVEGSADALAVKARQQGLRLL 453

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKI 153
             V+          +    ++LLNL   A    P    R     ++ Q       F +  
Sbjct: 454 CFVEPDLPVTVSVDAGRLRQVLLNLIGNAVKFTPAGEVRILVRQVNRQHDLCTVRFEVAD 513

Query: 154 NGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G     P             G+V        +       L       +  +        
Sbjct: 514 TGIGITAPVIALLFNPFVQADGSVTRKYGGTGLGLSICKRLVELMGGHIGVDSKPGAGST 573

Query: 209 LSALLE 214
               L 
Sbjct: 574 FWFELP 579


>gi|332655192|ref|ZP_08420933.1| sensor histidine kinase KdpD [Ruminococcaceae bacterium D16]
 gi|332516052|gb|EGJ45661.1| sensor histidine kinase KdpD [Ruminococcaceae bacterium D16]
          Length = 879

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
            +       +  L A L   I HD+ +P+ +I  +   L   G         Q+      
Sbjct: 638 KEAAAVLAKNEQLRANLLRSISHDLRTPLTSISGNANNLLSNGNLFDTKTKEQMYTDIYD 697

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---- 114
            A+  +  +      +   +  + L    +++++ +A   R     + E     +     
Sbjct: 698 DAMWLINLVENLLSVSRLEEGRMNLHVSTELMDEIVAEALRHINRKSVEYHLNVQSSEEY 757

Query: 115 ---------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++++N+   A    P G ++ I  +   N    S+  NG       K  
Sbjct: 758 LLVQVDAKLIIQVIINIVDNAIKYTPPGTEIDIGWRKQGNLVYVSVSDNGPGIPDQAKPH 817

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  +  S  +       + + +   +       H  + +  + 
Sbjct: 818 IFDMFYSVSNQIADSRRSMGLGLALCKSIINAHGGEITVTDQLPHGSIFTFSVP 871


>gi|189423635|ref|YP_001950812.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419894|gb|ACD94292.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 627

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +   +  +       +   + + H+I +P+  I   ++LL ++ +     + +     
Sbjct: 236 ETLRSTMQQLKSANEAKSRFLAVMSHEIRTPLNGITGMVQLLRDMEMPPAQREYLNFIDS 295

Query: 59  SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------------RVQV 102
           SA          +  +      ++  +      +++ D + V +                
Sbjct: 296 SAESLLNVINDILDFSKIEAERLELELVPFQPLKLLHDTLRVMRLRTQAKGLLLSLVCPP 355

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARF 160
                 +       +IL NL   A      G  V    S        +F++++  +    
Sbjct: 356 DLAEVLVGDPHRLTQILNNLVGNAIKFTAGGEIVVRASSRSRGDGTVLFAVEVQDSGIGM 415

Query: 161 PEKFTQ-IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +   Q I +  +              +       L       +       +       +
Sbjct: 416 DQATQQTIFEPFIQADSSTSRRFGGTGLGLAICKQLVELMHGTITVASSPGNGSTFCFAV 475

Query: 214 E 214
            
Sbjct: 476 P 476


>gi|166030503|ref|ZP_02233332.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC
           27755]
 gi|166029665|gb|EDR48422.1| hypothetical protein DORFOR_00164 [Dorea formicigenerans ATCC
           27755]
          Length = 957

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 28/222 (12%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            + HDI +PI  I   L +L++ G + E  +        +   L  +         ++S 
Sbjct: 584 NMSHDIRTPINGIMGMLTILEKSGNDGERAKDCLNKIHESSKLLLSLINDVLDMAKLESD 643

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWT-----------------GEKIDLSRERAKILLNLF 123
             +   E +  D +  +    +S+                        +    K+L+NLF
Sbjct: 644 TVVFGDESINLDQVCQEITESLSFQAEEKGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLF 703

Query: 124 MVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172
             +               TI   +      F ++ NG          ++           
Sbjct: 704 TNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIGMSEEFIKNELFTPFVQADNSP 763

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S  +   +    V  L  +    +  E         + +L 
Sbjct: 764 RSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTVILP 805


>gi|117926642|ref|YP_867259.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117610398|gb|ABK45853.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1059

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 61/239 (25%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    + +      L  + + H+I +P+  I   +ELL    +  E  Q +   S  ++
Sbjct: 528 AKQEAESANHAKSAFL--ATMSHEIRTPLNGITGMIELLQRSALSVEQRQQVETISKCSV 585

Query: 62  IRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + +  +                         +   +      Q     + +   +     
Sbjct: 586 VLMDILNDILDLSKIEAGQLVLERAPFSPTQLLLNLLEVMQPQARNKELDLQLNMDEKLP 645

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161
              +  +    ++ LNL   A    PRG            D       +++  G      
Sbjct: 646 STMLGDATRLRQVALNLIGNAIKFTPRGWVKISLLVHERIDDIVWVELAVQDQGIGI-AD 704

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           EK   + +        +        +       L       +    I+         L 
Sbjct: 705 EKLVHLFNPFTQADSSITRNYGGTGLGLAISKRLVEAMAGAISVTSIEGKGTHFRVTLP 763


>gi|330888950|gb|EGH21611.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 697

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +A+       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 427

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      +    +
Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546

Query: 210 SALLEK 215
              L +
Sbjct: 547 CLYLPR 552


>gi|327538030|gb|EGF24720.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
          Length = 1122

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 59/232 (25%), Gaps = 27/232 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+ +    S         + + H+I +P+ AI    +L+ ++  + + ++ +     +  
Sbjct: 713 ARAVAEAASQSKSA--FVANMSHEIRTPMTAILGYADLVRDMIEDPQAIEHLETIRRNGD 770

Query: 62  IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WT 105
             L+               + +          +  +  I +V      +   VQ      
Sbjct: 771 YLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDVRSIMEVRAKEGGLSLDVQYIGLLP 830

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  +   +IL+NL   A                        +   G      E+  
Sbjct: 831 KTIESDGKRLKQILINLVGNAIKFTQ--KGWVQIRVRFNKWLHIDIVDTGIGM-SDEQQK 887

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           ++          V  T     +       L       ++    +      + 
Sbjct: 888 RLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGGTIIASSTEGVGSTFTV 939


>gi|320101873|ref|YP_004177464.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749155|gb|ADV60915.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1021

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/244 (8%), Positives = 62/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + +     + +  + +   + + H+I +PI ++   ++LL    + +   +         
Sbjct: 532 LQRARAEAIEASRVKSQFLANLSHEIRTPIASVIGLIDLLSTSELSEAEREETTSLLRLA 591

Query: 52  --LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--- 106
              +       +   K          S      +      +    A  + +++       
Sbjct: 592 AEHLSSMVNDVLDLSKIEAGRMTLEWSPTDPCQVIRAALNLLAIQARARGIELVMEPLDQ 651

Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGN 156
                           +IL+NL   A     R      +    +++     +  +   G 
Sbjct: 652 SEPSPPSICTDPTRLRQILVNLISNAIKFSERGGRVTVRYGPRIEEDSRWLVIDVVDQGI 711

Query: 157 LARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               P++  ++     +             +       LA +    L            +
Sbjct: 712 GI-APDQIERLFTPYTQADETSQRRHGGTGLGLAISRRLAEQLGGELHVRSQVGVGSTFT 770

Query: 211 ALLE 214
             L 
Sbjct: 771 LTLP 774


>gi|317500634|ref|ZP_07958853.1| hypothetical protein HMPREF1026_00796 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089886|ref|ZP_08338779.1| hypothetical protein HMPREF1025_02362 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897952|gb|EFV20004.1| hypothetical protein HMPREF1026_00796 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403583|gb|EGG83141.1| hypothetical protein HMPREF1025_02362 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 351

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 73/242 (30%), Gaps = 30/242 (12%)

Query: 4   NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------ 51
            +    ++ + VA       L S I HD+ +PI AI   +E + +   +           
Sbjct: 102 RLRLKANAEEKVAFDRENKELISNISHDLKTPITAIKGYVEGIMDGVADTPERMDRYIKT 161

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSL------------IGLGDIEQVIEDFIAVDKR 99
           +   ++   ++  +    +   T  +                G     ++    I     
Sbjct: 162 IYNKANEMDLLINELTLYSKIDTNRIPYNFTTISAKGYFGDCGEDLHMELESKGIEFTYC 221

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLA 158
             +    + I    +  +++ N+   +   + +   KVT+ V+D  +     L  NG   
Sbjct: 222 NTMEEDCKVIVDPEQLRRVINNIVSNSLKYMDKPNGKVTMEVKDVGDFIQVELGDNGKGI 281

Query: 159 RFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    F +    +           I    V  +  E+   +     +     +  ++
Sbjct: 282 AAKDLPYIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGNIWATSEEGAGTTMYFVI 341

Query: 214 EK 215
            K
Sbjct: 342 RK 343


>gi|253563936|ref|ZP_04841393.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251947712|gb|EES87994.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 389

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK      + +     L + + H+I +P+ AI     LL   D+   + E + LI+ ++ 
Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIIDDEKEQQEYIGLIQSNTE 213

Query: 59  SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106
             +  +  +              GS   L  L    ++     A    + ++W       
Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETDNLVLAWDREQSNA 273

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     +IL +L   A     +G       +    +  F +   G      +    
Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVHWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F + V  +  +      +      ++       +  E            + 
Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|257069858|ref|YP_003156113.1| signal transduction histidine kinase [Brachybacterium faecium DSM
           4810]
 gi|256560676|gb|ACU86523.1| signal transduction histidine kinase [Brachybacterium faecium DSM
           4810]
          Length = 597

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 59/215 (27%), Gaps = 20/215 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRL------- 69
             + + H++ +P+ ++   LEL  +   +       ++++  +A   L  +         
Sbjct: 357 FVASVSHELRTPLTSVIGYLELAQDDLALSKASAAYLQVAHRNAEQLLLIVEDLLADQVA 416

Query: 70  -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                          +      +   +  +   +   + +  T E    ++   + + NL
Sbjct: 417 RSGTQELTLRPRRLSEIAQQAAESFALRAEEAGIALELDLQETPELPLDAQRLQQAVGNL 476

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-----TID 177
              A     RGG+V +      N    S+   G      E+                 I 
Sbjct: 477 LSNALKYTGRGGRVDLRTGVHGNHAELSVADTGIGMSAQEQRNLFTQYYRTRTARESAIA 536

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            H I       +   +  ++            +  
Sbjct: 537 GHGIGLSLTRQIVLAHGGQISVRSQPGEGSTFTLR 571


>gi|229172196|ref|ZP_04299760.1| hypothetical protein bcere0006_13100 [Bacillus cereus MM3]
 gi|228611184|gb|EEK68442.1| hypothetical protein bcere0006_13100 [Bacillus cereus MM3]
          Length = 423

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQETVSPSNKELFENLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYNFSTELDDVLVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG           I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGIGIPTA-IQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNQD-GTTFTISIP 409


>gi|225018009|ref|ZP_03707201.1| hypothetical protein CLOSTMETH_01945 [Clostridium methylpentosum
           DSM 5476]
 gi|224949215|gb|EEG30424.1| hypothetical protein CLOSTMETH_01945 [Clostridium methylpentosum
           DSM 5476]
          Length = 507

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHN----------------SLELLDEVGI 45
            ++    L    L   L   I HD+ +P+  I                  +L LL ++G 
Sbjct: 268 QESSKIELEKEKLRNNLLRSISHDLRTPLTGIAGSASFLMDSYDSLDKQTALSLLSDIGS 327

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   +  +  + ++         L       VD ++                +    +  
Sbjct: 328 DVTWLNNLVENLLNMTRIQDGKLLIKKENEVVDDVVSEAVRRVAKLQKEHDLQIHVPNDI 387

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  R   ++ +NL   A     +   V ++V   + + +F +  NG     PE   
Sbjct: 388 LLVPMDGRLIVQVFVNLLGNAFEHTRKDSSVELNVYVEEGQAVFEVADNGGGI-QPEILD 446

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +          +     +       +   +   +  +  D        LL 
Sbjct: 447 TLFESFVSAQNDTDSHRGIGLGLSICKAIVQAHGGDIQADNNDRGGATFRFLLP 500


>gi|220908496|ref|YP_002483807.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219865107|gb|ACL45446.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 469

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 65/237 (27%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIRL 55
           +N+   + S  L       I H++ +P+ AI    +LL     +           +++  
Sbjct: 204 QNLEL-IESNRLKNQFMGIISHELRTPMNAILGFSDLLLRRFHDRYEPQQIAFLERILNN 262

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGE 107
           +    ++  + +  +      ++  +   D+ +        +          +++     
Sbjct: 263 AKHLLLMIEEILAYSRLKAHRLELQLEAFDLLELARITAEEMQCMADQKALALELDLPPS 322

Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            + +  +R ++   L      A      G            + + +++  G         
Sbjct: 323 PLVVCNDRTRVRQILVNLLSNAIKFTDTGRVTLAIAPGKAEKLLITVQDTGIGIDPAH-Q 381

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I             +     +       L    + ++  E       V    L +
Sbjct: 382 GRIFQEFWQVNQSQTRSQGGTGLGLSITSSLVTLMQGKIWVESELGEGAVFRIELPR 438


>gi|170760992|ref|YP_001786290.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407981|gb|ACA56392.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 342

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 75/236 (31%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K +++ +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLKQKYYLDEQIRQTILLFEYQWTKKNITLDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     D + +    V  +    K  +     ++     +  L K
Sbjct: 287 KNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICKGTIEISSHEEVGTEFTVKLPK 342


>gi|218895467|ref|YP_002443878.1| sporulation kinase [Bacillus cereus G9842]
 gi|218543075|gb|ACK95469.1| sporulation kinase [Bacillus cereus G9842]
          Length = 408

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 71/224 (31%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           M +     +     +  + + I H+I +P+ A+    ++  +    +     ++      
Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPADTMSYDIMLQEIER 243

Query: 60  AIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
               +  +          +      D L+ +  + +       V   +QV          
Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYAMQYRVKCHLQVDGNLPAINGD 303

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 362

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 363 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 406


>gi|149184835|ref|ZP_01863153.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. SD-21]
 gi|148832155|gb|EDL50588.1| two-component signal transduction histidine kinase [Erythrobacter
           sp. SD-21]
          Length = 395

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 15/217 (6%), Positives = 54/217 (24%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMR--- 68
             +   H++ +P+ +I   +E L       +  + D+ +  I+         +  +    
Sbjct: 173 FVANASHELRTPLSSILGYVETLREDVNDFDPKMGDKFLATIQREGQRLQQLISDLMSLS 232

Query: 69  -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                       +++    +    + +         ++           ++  +++ NL 
Sbjct: 233 RIEAEKHDLPDTTLELGALMDRAARDVAGDRVERLDIEAHGEFHVCGDEQQLEQLVRNLV 292

Query: 124 MVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVD--GNVESTID 177
             A                      + S++  G             +             
Sbjct: 293 DNALKYGAADEQVTVRLQPRGDKRVMLSVQDRGGGIAPEHLPHLTRRFYRTDPGRSRASG 352

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   ++ +L  + +      +   L 
Sbjct: 353 GTGLGLAIVKHIVERHRGKLAIDSVLGEGTRIKVTLP 389


>gi|115374332|ref|ZP_01461616.1| FrgB [Stigmatella aurantiaca DW4/3-1]
 gi|115368642|gb|EAU67593.1| FrgB [Stigmatella aurantiaca DW4/3-1]
          Length = 504

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 64/226 (28%), Gaps = 17/226 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSS 57
               L  +  +    +++ HD+ +PI A+  + + L E          + + + L+    
Sbjct: 264 QRERLEHLATLGRFSAQMAHDLKNPIAALKGAAQFLKEEHTQGHSWEDKGDFLDLLLEQV 323

Query: 58  MSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                     + +      T  +D    + D+  +         +++ +   +    + +
Sbjct: 324 ERLDRVVSTYQRLGRVEPLTRPLDVNRLVEDVLGLQAFAGFPHVKLERALARDLPLCAGD 383

Query: 115 RAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +   L  +   +     +       T          +  ++  G       +  +  
Sbjct: 384 HDLLANALENLVRNACEAMPRGGTLTVRTRREDPDGRSVMLCVEDTGEGMDARTR-ERAF 442

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +   +V  +   +   +     + H  +L   L 
Sbjct: 443 DEFFTTKASGSGLGLAFVRRVVEAHGGEVSLTSREGHGTILLLRLP 488


>gi|88860607|ref|ZP_01135244.1| sensory box sensor histidine kinase [Pseudoalteromonas tunicata D2]
 gi|88817202|gb|EAR27020.1| sensory box sensor histidine kinase [Pseudoalteromonas tunicata D2]
          Length = 485

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 22/252 (8%), Positives = 68/252 (26%), Gaps = 39/252 (15%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------- 48
           + +       +  + ++  L + + H+I +PIG + +++  L E   E +          
Sbjct: 228 LEQAQQQLTQAEKMASIGQLAAGVAHEINNPIGYVMSNISSLKEYIDEFKSYFKTVELEN 287

Query: 49  --------------------VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ 88
                                M  +            F           +    +     
Sbjct: 288 KKTTDEVDFLLTDSAAIINSCMGGLERVRTIVKDLKTFSHSGQEQAVRFNLNQCVESALS 347

Query: 89  VIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK 144
           ++               +    + +    +  +++LN+ M A  ++P+GG + I      
Sbjct: 348 LMGSEFKYGSYEIELHLIEPFADVLGTKNQIEQVMLNILMNAKQAMPQGGVIRIRSYIDG 407

Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEII 202
           ++   +++  G          ++ D    +        +       +    +  +  +  
Sbjct: 408 DKACLAIEDQGCGMDSK-VQQRLFDPFFTTKPVGVGTGLGLSISFKIIEAYQGEIQVKSE 466

Query: 203 DDHNVVLSALLE 214
                  +  L 
Sbjct: 467 IGKGSCFTIKLP 478


>gi|119775347|ref|YP_928087.1| putative two-component sensor histidine kinase protein [Shewanella
           amazonensis SB2B]
 gi|119767847|gb|ABM00418.1| conserved hypothetical two-component sensor histidine kinase
           protein [Shewanella amazonensis SB2B]
          Length = 600

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 60/231 (25%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L  V  + + I H++  P+ AI +  +      E  +     + + +
Sbjct: 359 LKDTQDELIQAAKLTVVGTMSASINHELNQPLAAIRSYTQNTQTFLERDMPGRARENLAI 418

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSW 104
                      +     +T                   L  ++  ++   A         
Sbjct: 419 ILELTDRLADIVGQFKSFTRKSQGKDGVVMLANCLQQALTIVQPELDKQKAQLTIHCEDE 478

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEK 163
           + +         ++L+NL   A  ++ +     +S+     +     ++ +G   R    
Sbjct: 479 SLKVWCDGTRLQQVLVNLITNALNAMSQSPVKRLSISLLGGDPVTIRIQDSGPGVRDSLM 538

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S      +       +    +  +      +   +    L 
Sbjct: 539 EKIFEPYYTTSERQGLGLGLSISRRIIESMQGDIRVANAPEGGAIFDITLP 589


>gi|95930270|ref|ZP_01313008.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133733|gb|EAT15394.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 946

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 64/235 (27%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           + ++I        L     S   H++ +P+  I    ELL      +    ++  + +  
Sbjct: 703 LLRDITRERELDQLKNEFISSAAHELNTPLTVIMGFAELLVNREYRQSITLEQQQEFLET 762

Query: 56  SSMSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                 +    +                      D  + +  + +  E      + + + 
Sbjct: 763 IRNKGEVLTSIVDDLLKLEQLEFGQSIQLQYHCFDLQLDIMTLVKHYEKTYTDHRFIVMV 822

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              E         ++L NL   A    P   ++ IS+Q   ++ + +++  G        
Sbjct: 823 EPCELWADQERVGQVLDNLLSNAVKFSPPQTRIHISLQMKNHQAVITVRDEGIGMEQKNI 882

Query: 164 FTQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         ++     +       +   +   +  +   D    ++  L 
Sbjct: 883 DKVFDKFFRIDGSTTSKGGLGLGLTVAKSIIDAHHGSIRVDSEVDRGTTVTLTLP 937


>gi|219667581|ref|YP_002458016.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537841|gb|ACL19580.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 389

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMS 59
           + ++   N         L + I HD+ +PI +I   LE++ E  + E E ++    +  S
Sbjct: 147 LQESERSNQEYEKNRKTLVANISHDLKTPITSIQGYLEVILEGCVGEPEKIKRYLETIYS 206

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----------------KRVQV 102
               +  +         +D      + E +       D                  + + 
Sbjct: 207 NTAYMNKLIDDLFLFSKLDLDKVAMNYEVLSIGAYLDDLATELKFEFEERQFKFFYQNRT 266

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                     +   + + N+   A    P    KVT+ +   +++    +  NG      
Sbjct: 267 DRDYAVTIDGKRVYQGIRNIIDNAMKYGPEQDLKVTMELYVQEDDICIDIADNGPGIPEE 326

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                    S  +       L       +     D      +  L 
Sbjct: 327 QLPHIFNRFYRLDTERSKDFTSTGLGLAIAKELIEAQGGTISAASTDRAGSRFTIKLP 384


>gi|318042449|ref|ZP_07974405.1| two-component sensor histidine kinase [Synechococcus sp. CB0101]
          Length = 426

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 59/211 (27%), Gaps = 13/211 (6%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
              + + H++ +P+  +    E        + V+   +         L    L      +
Sbjct: 213 QFSADVAHELRTPLANLLAVAEAQRAQPGIERVLAQGQRLQQLIADLLLLASLERPGAKT 272

Query: 77  VDSLIG--------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
              L          + D  ++             + T       RE +++L+NL   A  
Sbjct: 273 PMQLCDLAEITADVVEDWSEIAVSSEQAVSMAHEAETTTLRGTERELSRLLINLISNALQ 332

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQF 183
             P GG V + +Q        S++  G      ++            +         +  
Sbjct: 333 HSPCGGTVDVRLQSQGRWLALSVRDQGPGIPLEDQQRIFDRFTRLQPDRSRQNGGSGLGL 392

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +AH +   +       H    +ALL 
Sbjct: 393 AIAQAIAHRHGGEIRVASEPGHGATFTALLP 423


>gi|253576783|ref|ZP_04854109.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251843814|gb|EES71836.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 639

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 62/223 (27%), Gaps = 10/223 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           M  N       M++++ L + + H++ +P+      L+LL   +   +   + +      
Sbjct: 408 MFNNELQRSEKMEIISELAASVAHEVRNPLQVTRGFLQLLVEKQQNSDKVYLSMALEELD 467

Query: 59  SAIIRLKFMRLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            A   +              T        +     +I        ++ V           
Sbjct: 468 RASAIITDFLTFAKPEGGKVTTLNVLEEFIHIEGILIPLANLQGGKITVHIPKNLYVRGN 527

Query: 114 --ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +  +  +N+   +  +L   G + I   +  ++ +  +K NG      E   ++ +  
Sbjct: 528 SSKFKQAFINIIKNSIEALRGEGDIQIWSYEENDDVVIHIKDNGEGM-DEEVLARLGEPY 586

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +      ++           +     
Sbjct: 587 FSNKTKGTGLGLMVTFRIIEVMNGQIHFTSKKGAGTEVVIRFP 629


>gi|228998792|ref|ZP_04158378.1| hypothetical protein bmyco0003_33520 [Bacillus mycoides Rock3-17]
 gi|229006308|ref|ZP_04163992.1| hypothetical protein bmyco0002_32260 [Bacillus mycoides Rock1-4]
 gi|228754954|gb|EEM04315.1| hypothetical protein bmyco0002_32260 [Bacillus mycoides Rock1-4]
 gi|228760967|gb|EEM09927.1| hypothetical protein bmyco0003_33520 [Bacillus mycoides Rock3-17]
          Length = 424

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 65/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDMKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++      + ++     +  I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNIVKNGIEAIQENKGYLKVTAIQKDDVIIVRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +            L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIITLP 418


>gi|159029672|emb|CAO87750.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 391

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 57/235 (24%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
             N       ++ L     S + HD  +P+  I  S  LL+E        Q +    M  
Sbjct: 149 RTNQLEKAQELNQLKTEFVSMLSHDFRNPLNKILLSAGLLEESRDRLTKDQQVSYFRMIR 208

Query: 61  IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                   +     VD L     + +           +     G
Sbjct: 209 SAIKDMDQLLTEVLLIGRADSGRLYCQFDPVDLLDYCQKLVESFMVKPEKQSAIIFQIEG 268

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +   I   L      A    P+G  V   +     + +F +   G      + 
Sbjct: 269 SLERGLWDVNLIKHILTNLLGNAIKYSPQGNPVEFKIIVESEQVVFKIIDRGIGIPSKD- 327

Query: 164 FTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +            I    +    V      +K ++  E  +     ++ +L 
Sbjct: 328 QEHLFKPFYRGSNVDNIQGTGLGLAIVGRCVEAHKGQIYLESEEGKGTKITVILP 382


>gi|94264854|ref|ZP_01288629.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454675|gb|EAT04940.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 262

 Score =  111 bits (277), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 26/240 (10%)

Query: 2   AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            KN      S DL             I HD+  P+  I++ ++LL+    +    +   +
Sbjct: 13  RKNRQLEEKSADLARSNAELEQFAYVISHDLRQPLRMINSYMKLLERALDDKLDDETREM 72

Query: 56  SS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                         L  +          + ++ L   + + E    +  +++ +    ++
Sbjct: 73  MGFAAGGAQRMDQMLVSLLEYSRVGRKGEPMVPLASRQALDEALDFLAPKIKETGATVRL 132

Query: 110 DLSR--------ERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLAR 159
                       E  ++  NL   A           + +          F++  NG    
Sbjct: 133 SGDWPEIAASRDEFTRLWQNLIGNALKYRDPDRVCEVEISVTPEDEGWRFTVADNGIGID 192

Query: 160 F--PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
               ++  ++          +   I       +   +  R+  E             L K
Sbjct: 193 PKQFDRLFKVFQRLHTRDKYEGSGIGLAVARKIVERHGGRIWVESQGAGQGCRFIFTLPK 252


>gi|301058094|ref|ZP_07199146.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300447726|gb|EFK11439.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 600

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 64/226 (28%), Gaps = 16/226 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54
               + +  +  +  L + + H+I +P+G +  +++L+              + + +   
Sbjct: 370 ERELVQADRMATIGKLAAGVAHEINNPLGIMQANVQLILARGWYDESAKEPLEAIRRNAV 429

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +       L   R        VD +  +     ++   +   +        E I  +  
Sbjct: 430 RAGQITKDLLNLTRPGDPRPTHVDLVELVRVTLSMLHPQLKRIRVDFQPNPEEIIVYADR 489

Query: 115 R--AKILLNLFMVA----HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               ++L+N+ + A      +  +  ++       +N     ++  G             
Sbjct: 490 NLLQQVLVNILLNAKNSLEEASKKEIRIRFCAICEENAACIRIEDTGRGIPRKYLNRIFE 549

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   D   +  +    +  ++   +  E        +   L 
Sbjct: 550 PFFSHGKADGFGLGLFISRRIIEKHNGMIFAESEKGKGTHIIIELP 595


>gi|261824752|pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
           Complex With Response Regulator Protein Trra (Tm1360)
          Length = 349

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 16/212 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + +R+ H+I +PI  I   +      LD+     + + +I          +K +      
Sbjct: 135 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 194

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RAKILLNLFM 124
              ++      +        +  +K  +++        + +           ++L+NL  
Sbjct: 195 RQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQ 254

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A  +    GK+ I+ +D   +   S+  +G      E   +I      +      +   
Sbjct: 255 NAIEATGENGKIKITSEDMYTKVRVSVWNSGPPI-PEELKEKIFSPFFTTKTQGTGLGLS 313

Query: 185 YVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215
               +   E+  ++  E  ++  VV    + K
Sbjct: 314 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 344


>gi|227812276|ref|YP_002812286.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|298499508|ref|ZP_07009314.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
 gi|227011418|gb|ACP07629.1| sensor protein TorS [Vibrio cholerae M66-2]
 gi|227015228|gb|ACP11437.1| sensor protein TorS [Vibrio cholerae O395]
 gi|297541489|gb|EFH77540.1| TMAO reductase system sensor TorS [Vibrio cholerae MAK 757]
          Length = 1020

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 493 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 552

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   ++                    +    T
Sbjct: 553 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVT 612

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 613 QYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 672

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 673 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 726


>gi|170289259|ref|YP_001739497.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
 gi|281412861|ref|YP_003346940.1| multi-sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
 gi|170176762|gb|ACB09814.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga sp.
           RQ2]
 gi|281373964|gb|ADA67526.1| multi-sensor signal transduction histidine kinase [Thermotoga
           naphthophila RKU-10]
          Length = 755

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 16/212 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + +R+ H+I +PI  I   +      LD+     + + +I          +K +      
Sbjct: 541 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 600

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RAKILLNLFM 124
              ++      +        +  +K  +++        + +           ++L+NL  
Sbjct: 601 RQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQ 660

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A  +    GK+ I+ +D   +   S+  +G      E   +I      +      +   
Sbjct: 661 NAIEATGENGKIKITSEDMYTKVRVSVWNSGPPI-PEELKEKIFSPFFTTKTQGTGLGLS 719

Query: 185 YVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215
               +   E+  ++  E  ++  VV    + K
Sbjct: 720 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 750


>gi|118589310|ref|ZP_01546716.1| phosphate regulon sensor protein phor [Stappia aggregata IAM 12614]
 gi|118438010|gb|EAV44645.1| phosphate regulon sensor protein phor [Stappia aggregata IAM 12614]
          Length = 451

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 63/242 (26%), Gaps = 33/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           + +N         +     +   H++ +P+ ++   +E L      +    D  + ++  
Sbjct: 201 LTENRRL----ERMRTDFVANASHELRTPLASLTGFIETLQGPARNDPDARDRFLSIMLD 256

Query: 56  SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTG 106
            +      +          ++        VD    +      +      +   +++    
Sbjct: 257 QAGRMRRLIDDILSLSRIELKAHVRPANEVDLSEIVRHTADALSPLASDMGVEIRLQLPE 316

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLA 158
             + +  +R    ++  NL   A      G  V       +          S++  G   
Sbjct: 317 TPVRIKGDRDELIQVTENLIENALKYGHDGKFVDVGLSKPAAPQDALSWQLSVRDYGEGI 376

Query: 159 RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E   ++ +            +    +    V  +   ++ RL  E            
Sbjct: 377 -PREHLPRLTERFYRVDVESSRAMKGTGLGLAIVKHILTRHRGRLEVESEPGQGATFKVS 435

Query: 213 LE 214
           L 
Sbjct: 436 LP 437


>gi|158321846|ref|YP_001514353.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
 gi|158142045|gb|ABW20357.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           oremlandii OhILAs]
          Length = 669

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 22/229 (9%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQLIR 54
           +    L +  ++A+  L + I H+I +P+G        I    E   E  +  + ++ I 
Sbjct: 439 SKRQILQANKMMAIGELAAGIAHEIRNPLGIVRNHSFIIRGYSE---ENPLISKSLEYID 495

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGE 107
            +           L F R++   T  VD  + +  I ++   ++  +     +       
Sbjct: 496 SAIDRASKIIDNLLNFSRISDNVTELVDINLFIHSIVELQCKYMQKNGITYEINCEKGYS 555

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I        IL+NL   A  + PRGGK+TI+V       +      G      +   +I
Sbjct: 556 AITNQESLKHILINLISNAIDATPRGGKITINVYPHNQGMVIECVDTGEGIDPKDI-ERI 614

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +        +  Y       + K  +  E            + 
Sbjct: 615 FNPFYTTKGPGKGTGLGLYIAYNEVKKLKGDIEVESKIHKGTKFKIYIP 663


>gi|15644111|ref|NP_229160.1| sensor histidine kinase [Thermotoga maritima MSB8]
 gi|4981919|gb|AAD36429.1|AE001790_1 sensor histidine kinase [Thermotoga maritima MSB8]
          Length = 755

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 16/212 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + +R+ H+I +PI  I   +      LD+     + + +I          +K +      
Sbjct: 541 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYINIITNELSRLETIVKEILEYSKE 600

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RAKILLNLFM 124
              ++      +        +  +K  +++        + +           ++L+NL  
Sbjct: 601 RQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRVEADRTRIKQVLINLVQ 660

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A  +    GK+ I+ +D   +   S+  +G      E   +I      +      +   
Sbjct: 661 NAIEATGENGKIKITSEDMYTKVRVSVWNSGPPI-PEELKEKIFSPFFTTKTQGTGLGLS 719

Query: 185 YVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215
               +   E+  ++  E  ++  VV    + K
Sbjct: 720 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 750


>gi|323136428|ref|ZP_08071510.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylocystis sp. ATCC 49242]
 gi|322398502|gb|EFY01022.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylocystis sp. ATCC 49242]
          Length = 390

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 63/222 (28%), Gaps = 27/222 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           L S + H+I +P+  I  + +LL+      +  + +LI   +   +  +  M +      
Sbjct: 156 LASMLAHEIKNPLSGIRGAAQLLEPGLGDADRALTRLICEETDRIVRLVDRMEVFSDARP 215

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------IDLSRERAKILLNLFMVAHA 128
                + +  +   ++         +V +                +  +  LNL   A  
Sbjct: 216 LKREQVNIHSVLDHVKQVAQSGFARRVRFVENYDPSLPPVYANRDQLVQAFLNLVKNAAE 275

Query: 129 SLPRGG----------------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           ++                    +             F ++ NG      +    + D  V
Sbjct: 276 AIGDAVDGEIELSTAFRPGVSLRAMGEKSPVGLPLEFCVRDNGPGV-PDDIAAHLFDPFV 334

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  + +++   +  E +         L+ 
Sbjct: 335 TTKSSGTGLGLALVAKIVNDHGGIIECESLP-RRTTFRILMP 375


>gi|315645081|ref|ZP_07898207.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
 gi|315279502|gb|EFU42807.1| Signal transduction histidine kinase [Paenibacillus vortex V453]
          Length = 409

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 63/235 (26%), Gaps = 25/235 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++    +      + L + + H+I +P+  I     LL    +++E  + + L   S+  
Sbjct: 167 EDENDRILQEK--SELLAVMSHEIRTPMNGIMGMSALLQLTSLDEEQREYVELIEQSSES 224

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTG 106
            L  +     Y+   ++ + L      +   +                     +      
Sbjct: 225 LLSMIEHILEYSKVENTKMELVMEPFYLRPLMKQVTSLFMNDVQRKGIRLHVVIGDEVPE 284

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
           +    + +  ++L+NL   A      G          + +    S++  G       +  
Sbjct: 285 KVTADANKIRQVLINLISNAIKFTSEGEVSVAVGISPETQAIKISVRDTGIGIPVDRRHR 344

Query: 166 ------QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 Q     V        +       L      R+  E         +  + 
Sbjct: 345 LFKSFSQAHHAEVTREYTGTGLGLSICKQLTELMNGRIWLEETSGEGACFTFTIP 399


>gi|298249355|ref|ZP_06973159.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297547359|gb|EFH81226.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 554

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 59/214 (27%), Gaps = 22/214 (10%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQ--------------LIRLSSMSAIIRLKFMR 68
            H++ +P+ A+    +L+ +   +    +              L RL      +      
Sbjct: 338 SHELRNPLAALKMQTQLVRKRLEKQSHHEAATALSRVEGPVKQLERLIGELLDVSKIQAG 397

Query: 69  LAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
                   VD    L ++   + +        V+ +     I       ++  NL   A 
Sbjct: 398 KLEYLQEPVDLEALLHEVADTMQQISTTHAVVVRGAAPCTLIGDKGRLEQVFTNLISNAI 457

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDI 181
              P    V I +  S       +  +G      E+  +I +         +  I    +
Sbjct: 458 KYSPDAKTVEIDLDASPEMVTIRVHDHGPGI-PREQRDKIFERFYRVADPNQKAIPGLGM 516

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             Y V  +   +   +  +         +  L +
Sbjct: 517 GLYIVAEIVKRHGGTITVDSEVGKGSTFTVTLPR 550


>gi|158523282|ref|YP_001531152.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512108|gb|ABW69075.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 962

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 62/241 (25%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
                    M+ V  L   + HD  + +  I    EL        + +           +
Sbjct: 582 STQLLQAQKMESVGRLAGGVAHDFNNMLSVILGYTELAMHRVPPHDPLYEDLREILSAAK 641

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            SS      L F R        +D    + ++ +++   I  D  +  +       ++ +
Sbjct: 642 RSSEITRQLLAFARKQTSSPKVIDLSDTVENMLKMLRRLIGEDIDLAWNPGPGLWTVNMD 701

Query: 115 RAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGN 156
            A+I   L  +   +                    +      +     +  + ++  +G 
Sbjct: 702 PAQISQILANLLVNARDAIGGVGKVTIETGNVSFDQDYCEDHNEFLPGDYVVLAVSDDGC 761

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  ++ +    +        +    V  +  +N   +               L 
Sbjct: 762 GMDRKTR-DRLFEPFFTTKEVGKGTGLGLATVYGIVSQNNGFINVYSEPGQGTTFRIYLP 820

Query: 215 K 215
           +
Sbjct: 821 R 821


>gi|115376297|ref|ZP_01463537.1| PilS2 [Stigmatella aurantiaca DW4/3-1]
 gi|115366722|gb|EAU65717.1| PilS2 [Stigmatella aurantiaca DW4/3-1]
          Length = 321

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     +  +  V  L + + H++ +P+  I   L L        E+   +        
Sbjct: 97  AQTELVAVERLATVGRLAAGVAHEVGNPLAGILGYLSLARMRATTPELKDFLDRIDHEVH 156

Query: 62  IRLKFMR-------LAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDL 111
                +R          G    VD         +++    +   V+    +         
Sbjct: 157 RIDGIVRGLLDLGRPRSGPLAPVDMGQVAETCVRLVSAGPELSRVEVSFALEPGLLARAD 216

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
               ++I++NL + A  ++   G V +S +    E   +++  G      E   ++ +  
Sbjct: 217 PGPLSQIVINLLLNAAQAMGGEGAVRVSTRREGGEVWLAVEDGGPGL-SAEVMARLFEPF 275

Query: 172 VESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +       +     + LA     RL+ E I       +  L
Sbjct: 276 FTTKDGKGTGLGLAVSLHLAQGMGGRLVAENIPAGGARFTLCL 318


>gi|330962291|gb|EGH62551.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 775

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 66/232 (28%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S     +   SR+ H++ +P+ +I    +LL+      +  Q+  +      
Sbjct: 394 AREEAERASRAK--SEFLSRMSHELRTPLNSILGFAQLLEMDSPASQRPQVGHILRAGQH 451

Query: 62  IR----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTG 106
           +                        V     L +   ++    A          Q+    
Sbjct: 452 LLKLINEVLDIARIEAGHISLSLEPVPLSNVLQEALVLVSPMAADGNIELPALPQLPDEL 511

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +   +   ++LLNL   A       G+V I V+ S      S+  +G+    PE   Q
Sbjct: 512 GVVADRQRLIQVLLNLLSNAIKYNRPNGQVRIEVEQSAERVAVSVVDSGHGI-APELIDQ 570

Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +           +++   +       +       L    +       +  L 
Sbjct: 571 LFKPFERLNADPSVEGTGLGLALSKSMLEMMHGTLSVHSVPGEGSRFTLELP 622


>gi|295706458|ref|YP_003599533.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
 gi|294804117|gb|ADF41183.1| two-component sensor histidine kinase ResE [Bacillus megaterium DSM
           319]
          Length = 590

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 23/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + + H++ +PI  +    E + +         ++    +   S     +  + + LA   
Sbjct: 372 ANVSHELRTPISMLQGYSEAIIDDIASTDEEKKEIAQVIYDESLRMGRLVNELLDLARME 431

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERAKILLN 121
            G V   +    + +  E  +   + +            +V    E +  S    ++L N
Sbjct: 432 AGHVQLHLESVAMVEFTERVLRKFQGLAKEKHIKLSLNGKVEDEFEAMIDSDRMEQVLTN 491

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           L   A       G+V + +  S++E   S++  G      +    F +    +       
Sbjct: 492 LIDNAIRHTDDYGEVKLHLDKSQSEIHLSVQDTGAGIPKEDLPFVFERFYKADKARTRGK 551

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +       +   ++  +  E   +        L K
Sbjct: 552 SGTGLGLAIAKNIVEAHQGIIAVESELNEGTTFFIKLPK 590


>gi|261211606|ref|ZP_05925893.1| signal transduction histidine kinase [Vibrio sp. RC341]
 gi|260838956|gb|EEX65588.1| signal transduction histidine kinase [Vibrio sp. RC341]
          Length = 569

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 64/235 (27%), Gaps = 25/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      +     +   + + H++ +P+ A+   +++L       +   L ++ + + 
Sbjct: 198 LAQKFAEQANQSK--SNFLAMMSHELRTPLNAVLGLIDVLRGDSTSYQAELLEQMENSAE 255

Query: 61  IIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           ++                   +   +           +   +   E  IA + +  ++  
Sbjct: 256 LLLIIINDVLDLSRIESGHFSLHCHWVDLKKKLDQSLVYHRQIAQEKGIAFNVQTHINER 315

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            E    S    +IL N+   A      G      +  + ++  F +K  G          
Sbjct: 316 LEYYTDSARLTQILFNIVGNAIKFTKSGQVDIDLIYGT-HQVTFRVKDTGIGIEKNRI-D 373

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++    +              +       L       +  E   +        + 
Sbjct: 374 RLFTPFIQADNSITRNYGGTGLGLAITKHLIELMGGSIQVESELEVGTTFILQVP 428


>gi|256829865|ref|YP_003158593.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579041|gb|ACU90177.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 534

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
              +      +     L +   + + H++ SP+ +I   L+ L       +    + +  
Sbjct: 294 TSELALANEELKTLDRLKSEFLATMSHELRSPLTSIRGGLDYLRRTETSADRQDYLHIMD 353

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------------S 103
            +       +   F  T      I        + + +     +                S
Sbjct: 354 KNVSRLTHLVTDIFDITRIEAEKIDWNFGPADMTELVGEIVEIMSPLAEERGLRLGLLSS 413

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +       ++++NL   A    P GG ++ ++Q+   E    ++  G      ++
Sbjct: 414 GPMIALADVERIEQVIVNLTDNAIKYSPDGGVISFTLQNEGGEIRILVRDQGPGIPPGDR 473

Query: 164 FTQIVDGNVESTIDSHDIQF-------YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I      +       +             +   +  R+  E       V +  L 
Sbjct: 474 -QAIFKKFHTAPSSGTGGKPGGTGLGLAICSQIVRAHGGRIWVEDNPGGGSVFTFTLP 530


>gi|205375080|ref|ZP_03227871.1| histidine kinase [Bacillus coahuilensis m4-4]
          Length = 343

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 26/241 (10%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----------- 45
           M+  +   +     S  L   L + + HD+ +P+ +I + +E L +  +           
Sbjct: 102 MSSRVKEMIDDVKESERLKTELIANVSHDLRTPVASIRSHVEALIDQILTDEKTREQYLS 161

Query: 46  ----EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKR 99
               E   +  +    +      +           VD   +  L   E++ E        
Sbjct: 162 TIKQESVKLSELLEEVLQLSQLERGSVPFHPERTKVDELLVSVLSSFERMAEKKGIEFVV 221

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    + + ++  ++L NL   A      G  +TI V+DS    IF +   G    
Sbjct: 222 QIDEREDSILIVPQQIHRVLSNLIENAIRYSNNGRTITIIVEDSGRATIFRVTDEGEGIP 281

Query: 160 FPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F E    F +                +           +   +  + +          + 
Sbjct: 282 FEEQKNIFDRFYRVEKSRNQAYGGSGLGLAICKEFVTLHGGEIGVKSVKGWGSEFWFTIP 341

Query: 215 K 215
           K
Sbjct: 342 K 342


>gi|197119238|ref|YP_002139665.1| PAS/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088598|gb|ACH39869.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 853

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 61/243 (25%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + +   F    M+ +  L   + HD  + +  I  S +L      E     + ++ I  +
Sbjct: 473 LLQAQLFQSQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQA 532

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
              +    + +             + L +    ++  +       +              
Sbjct: 533 GKRSSQITRQLLAFSRKEIIAPREVNLNEHFTEMQKTLGRLIGEDIRMNFNPEPGLWTID 592

Query: 114 ----ERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKIN 154
               +  +IL+NL + A  ++  GG                              ++  N
Sbjct: 593 ADTTQLDQILVNLAVNARDAMGNGGVLTIETANVRVDGSYSQFHLDASLGEYVQLAVSDN 652

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E   QI +    +        +    V  +  ++   +               
Sbjct: 653 GCGM-DRETLAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGEGTTFQIN 711

Query: 213 LEK 215
             +
Sbjct: 712 FPR 714


>gi|159901279|ref|YP_001547526.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894318|gb|ABX07398.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 810

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L   +   + HD+ +P+  I N L+LL    + +   +L+  +  S+
Sbjct: 575 LQTEHQQLQRSEQLREQMNQMVVHDLKNPLTVIINYLDLLRRQALPESQRELVEGARRSS 634

Query: 61  IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                               M +   +      L  + +  +   +  A    +Q     
Sbjct: 635 RTLVGLVSDLLDTARLQEGHMSINREHVPIAPLLHNVANELRSWAEQEAKIISIQADPEL 694

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP----- 161
                     ++L NL   A    P   ++ +    + ++  F +  NG           
Sbjct: 695 YATIDGDLMRRVLSNLLSNAIKHTPIQTEIKLIAYQADSQITFQVADNGPGIPEALQASL 754

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I++    +   S  +  Y+  L    ++  +          + +  + 
Sbjct: 755 FDRFTILNEQNHTRQRSTGLGLYFCKLAVEAHEGEIGVVSNSTTGTIFTITMP 807


>gi|88798530|ref|ZP_01114114.1| probable two-component sensor [Reinekea sp. MED297]
 gi|88778630|gb|EAR09821.1| probable two-component sensor [Reinekea sp. MED297]
          Length = 767

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 66/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +         +  +   ++I H+I +P+  +  +++LLD+  +++E  + I     S 
Sbjct: 385 LREERQKQQLKAEAQSYFLAQISHEIRTPLNGVLGTVDLLDQTQLDEEQKKYIETIQSSG 444

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----------------VQVSW 104
              L  +     Y+      + + + +  I+D                       +  + 
Sbjct: 445 KSLLNLVNDVLDYSRIEAGKMTVVEEQIHIQDLFRHQVELFRAQANQKSLNFKLTIDPNV 504

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
               +  ++   +I  NL   A     +G  V     + ++        ++  G      
Sbjct: 505 PEWILSDAQRIRQIATNLISNAIKFTDQGQVVVSLSSTRRNGHPYLSIQVRDTGIGIASH 564

Query: 162 EKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E                       +       L       +  +   +     +  L 
Sbjct: 565 EIAHLFDAYQQVDVGKRRVYGGTGLGLAISQQLVDLLGGTITVQSQQNQGSEFTVQLP 622


>gi|320156372|ref|YP_004188751.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
 gi|319931684|gb|ADV86548.1| signal transduction histidine kinase [Vibrio vulnificus MO6-24/O]
          Length = 569

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 17/235 (7%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      +     +   + + H++ +P+ ++   L++L +  +    + L+     SA
Sbjct: 198 LAREESERANRAK--SEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAGHINLLSHMESSA 255

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +                    +   +       + +            + ++  +++  
Sbjct: 256 GLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELSIELDD 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      +++L NL   A     +G        ++      S+   G      +  
Sbjct: 316 KRHYWLDPSRLSQVLFNLIGNAVKFTQQGQIDIRVNLENDE-LSISVIDTGIGIEKDKIS 374

Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  D ++        +       L       +               + 
Sbjct: 375 SLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKIP 429


>gi|295087713|emb|CBK69236.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Bacteroides
           xylanisolvens XB1A]
          Length = 754

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44
           K+    L +  L+A          + + H+I +P+ +I     +L               
Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSAEREEYI 572

Query: 45  -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                  + +++LI      + I   +M  +F      + +  +    QV+        +
Sbjct: 573 STINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIAPHLEFLK 632

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
                  E         ++L N    A         K+  S    +      ++  G   
Sbjct: 633 EVDDTPLEINVDRERLIQVLTNFLNNAGKFTETGYIKLGYSYLPDEGNVQIYVEDTGRGI 692

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+         ++       +      ++  +   ++  +         + +L 
Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGKIELKSEVGKGSRFTVILP 749


>gi|254994917|ref|ZP_05277107.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma
           marginale str. Mississippi]
          Length = 764

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 72/251 (28%), Gaps = 38/251 (15%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIR-- 54
            K++   L  S  L A+  L   I HD  + + AI    +LL       +     +++  
Sbjct: 422 RKSLETQLEQSQKLQAIGQLAGGIAHDFNNILTAIIGFCDLLLIQHPATDPSFRDIMQIK 481

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++      + F R        +D    + D+ Q+I+  I+ D  +++ +      
Sbjct: 482 QNANRATNLIKQLMAFSRKQTLQPKILDINNIVADLSQMIKRLISEDIELKIYYDKNIGL 541

Query: 111 LSRERAKILLNLFM---VAHASLPR---------------------GGKVTISVQDSKNE 146
           +  +  ++   +      A +++                                +    
Sbjct: 542 VKVDLCQLEQVIVNLVVNAKSAMNSGGVLTLRTYNLQVDASTIPKGMFVPDKDQVEHGEY 601

Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD 204
            +  +   G+     +   +I D    +  +     +    V  +  +    +       
Sbjct: 602 VVLEVIDTGHGM-DKQIIKKIFDPFFSTKSESYGTGLGLSTVYGIVKQTGGYVYVHSKVG 660

Query: 205 HNVVLSALLEK 215
                  LL +
Sbjct: 661 EGTKFMILLPR 671


>gi|288941217|ref|YP_003443457.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896589|gb|ADC62425.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 977

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 61/237 (25%), Gaps = 30/237 (12%)

Query: 6   CFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
              L +  L        + + H+I +P+ A+     LL+   + DE  +L R    S   
Sbjct: 567 QARLEAERLAQSKGEFLANMSHEIRTPMNAVLGLAYLLERQPLPDEAHELARQIHRSGQS 626

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------------QVSWTG 106
            L  +     ++      I +  I   + + +     +                      
Sbjct: 627 LLHIINDILDFSKIESGRIEIERIPFQLGEVLDNLVTIVGTSAADKAIDLVIRPPEDLES 686

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPE 162
             +       +IL+NL   A      G             ++    F+++  G     PE
Sbjct: 687 SLVGDPLRLGQILINLTSNAVKFTSDGQVEVRVESIARSHTEVTLRFTVRDTGIGI-DPE 745

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +                   +       LA     RL  + +          L
Sbjct: 746 TQAHLFQPFTQADASTTRRFGGSGLGLVICRRLAELMGGRLGLDSVPGEGSTFWLEL 802


>gi|228970525|ref|ZP_04131176.1| hypothetical protein bthur0003_3170 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228789257|gb|EEM37185.1| hypothetical protein bthur0003_3170 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
          Length = 402

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 183 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 237

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 238 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHIQVDGNLPAINGD 297

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      +K  +I   
Sbjct: 298 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENDKLEKIGKA 356

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 357 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 400


>gi|199597242|ref|ZP_03210673.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
 gi|199591758|gb|EDY99833.1| Signal transduction histidine kinase [Lactobacillus rhamnosus
           HN001]
          Length = 555

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 61/225 (27%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +       + H++ +P+ AI    E L     ++    D+ +++I   S      +
Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLSGAKNDPATLDKFLKIIFDESKRLTQLI 383

Query: 65  KFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
             +         +           +         +     +   V ++   + +   R+ 
Sbjct: 384 NDILTLSRPESNQTVQAQVPLKKLVDDALRNLAKVIKDKQIRVEVAIAPDLQVVTDERKL 443

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I+ NL   A       G VTI+ Q  +     ++   G      E   +I +      
Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTITAQVVEGHLSLAVADTGIGIPETE-QARIFERFYRVD 502

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L      ++            +  L 
Sbjct: 503 KARSRHNGGTGLGLAIVSELVKSMDGQVAVSSQVGVGSTFTVTLP 547


>gi|163857757|ref|YP_001632055.1| two-component hybrid sensor and regulator [Bordetella petrii DSM
           12804]
 gi|163261485|emb|CAP43787.1| two-component hybrid sensor and regulator [Bordetella petrii]
          Length = 533

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 63/231 (27%), Gaps = 27/231 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAI 61
             ++ + LL   + HD  + +  I  S ELL + G+ D   Q            ++    
Sbjct: 163 QKLEALGLLTGGVAHDFNNLLMVIRGSAELLRQPGLSDSKRQQYIDAISSTSDRAAHLTR 222

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L + R       + D    +  ++ +          +          +  +R ++   
Sbjct: 223 QLLAYARKQPLRPATFDVRSCIEGMQDLFHATTGSSIEIAYDLAPTPCYVHVDRNQLETC 282

Query: 122 LFM---VAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +      A  ++P                         +     ++   G     PE   
Sbjct: 283 ILNIIINARDAMPAGGTLTITVSAVDTVPATRHHGPAHRPHVAITIADTGLGI-APEVID 341

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +    +        +    V    +++   +      D   + +  LE
Sbjct: 342 RVFEPFFTTKEPGRGTGLGLSQVFGFINQSGGHVDVASTPDSGTMFTLYLE 392


>gi|297584934|ref|YP_003700714.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297143391|gb|ADI00149.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 475

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/216 (9%), Positives = 56/216 (25%), Gaps = 21/216 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            + HD+ +P+ ++    ELL +  +                  +K +   F  T  +   
Sbjct: 250 NVSHDLKTPLASVQGYAELLKDNQLSQADQHRYAEVIERQSRYMKELIDDFHLTMKLRHQ 309

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEK------------IDLSRERAKILLNLFMVAHA 128
                 E V  +    +  +QV                      +    +     M    
Sbjct: 310 ELPLSFESVAIEGFVRELVIQVLNEPRFEEADITFHSDASDICWQIDRHLYFRAVMNLLR 369

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYY 185
           +        +S++ + + +   +   G         + F +   G      +   +    
Sbjct: 370 NALVHNDDDVSIKVNVHSDRIEISDTGKGITRENQEQIFERYYKGTNTEDGEGSGLGMAI 429

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSA------LLEK 215
              +   +   +  +  +     ++        L+K
Sbjct: 430 ARDIIESHGGSVDLDSEEGMGTTITIFKGSQETLKK 465


>gi|157147983|ref|YP_001455302.1| hypothetical protein CKO_03790 [Citrobacter koseri ATCC BAA-895]
 gi|157085188|gb|ABV14866.1| hypothetical protein CKO_03790 [Citrobacter koseri ATCC BAA-895]
          Length = 760

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL+     +   +     ++     
Sbjct: 390 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVSPDSPDAPRITRALKAAERGAL 449

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  SV+    L ++ +++   +     +++           + +++
Sbjct: 450 LTQRLLAFSRKQSLHPHSVELKTLLENLSELMRHSLPATLTLEIEAQSPAWAAWIDVSQL 509

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G      E   
Sbjct: 510 ENAIINLVMNARDAMEGQTGTIKIRTWNQRVTRSDGRRQDMVALEVIDHGCGM-SQEVKA 568

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 569 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 620


>gi|114777041|ref|ZP_01452061.1| PAS/PAC sensor signal transduction histidine kinase [Mariprofundus
           ferrooxydans PV-1]
 gi|114552562|gb|EAU55022.1| PAS/PAC sensor signal transduction histidine kinase [Mariprofundus
           ferrooxydans PV-1]
          Length = 711

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 60/223 (26%), Gaps = 13/223 (5%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS------ 57
           +           A +  R+ H+I +P+  I  S E L            +  +       
Sbjct: 484 SELAEAQRNKAWAEVARRLAHEIKNPLTPIKLSAERLQRRFRVQVDNHQVFDACTQAIIA 543

Query: 58  --MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   +                + +  + Q + D     ++V+V +         + 
Sbjct: 544 QVERLQRLIADFSTLARMPQPKIREVPVNVLLQEMNDLFHGYRQVEVRFCDPHWQCPCDP 603

Query: 116 AKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            ++   L      A ++      + +    S +   + ++ +G+         ++ +   
Sbjct: 604 DQVRQVLINLMDNAVSASSDKVAIRLYAVLSDHWVEWHVEDDGDGIEEAAVS-RLFEAYY 662

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +      +       +A ++   LL              L +
Sbjct: 663 STKASGSGLGLAIAKRIAEDHHGELLLVSAA-APTHFCLRLPR 704


>gi|27365916|ref|NP_761444.1| signal transduction histidine kinase [Vibrio vulnificus CMCP6]
 gi|27362065|gb|AAO10971.1| Signal transduction histidine kinase [Vibrio vulnificus CMCP6]
          Length = 574

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 17/235 (7%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      +     +   + + H++ +P+ ++   L++L +  +    + L+     SA
Sbjct: 203 LAREESERANRAK--SEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAGHINLLSHMESSA 260

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +                    +   +       + +            + ++  +++  
Sbjct: 261 GLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELSIELDD 320

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      +++L NL   A     +G        ++      S+   G      +  
Sbjct: 321 KRHYWLDPSRLSQVLFNLIGNAVKFTQQGQIDIRVNLENDE-LSISVIDTGIGIEKDKIS 379

Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  D ++        +       L       +               + 
Sbjct: 380 SLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKIP 434


>gi|56416709|ref|YP_153783.1| sensory box histidine kinase/response regulator [Anaplasma
           marginale str. St. Maries]
 gi|222475075|ref|YP_002563490.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma
           marginale str. Florida]
 gi|255003053|ref|ZP_05278017.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma
           marginale str. Puerto Rico]
 gi|255004176|ref|ZP_05278977.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma
           marginale str. Virginia]
 gi|56387941|gb|AAV86528.1| sensory box histidine kinase/response regulator [Anaplasma
           marginale str. St. Maries]
 gi|222419211|gb|ACM49234.1| sensory box histidine kinase/response regulator (dhkA) [Anaplasma
           marginale str. Florida]
          Length = 827

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 72/251 (28%), Gaps = 38/251 (15%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIR-- 54
            K++   L  S  L A+  L   I HD  + + AI    +LL       +     +++  
Sbjct: 422 RKSLETQLEQSQKLQAIGQLAGGIAHDFNNILTAIIGFCDLLLIQHPATDPSFRDIMQIK 481

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++      + F R        +D    + D+ Q+I+  I+ D  +++ +      
Sbjct: 482 QNANRATNLIKQLMAFSRKQTLQPKILDINNIVADLSQMIKRLISEDIELKIYYDKNIGL 541

Query: 111 LSRERAKILLNLFM---VAHASLPR---------------------GGKVTISVQDSKNE 146
           +  +  ++   +      A +++                                +    
Sbjct: 542 VKVDLCQLEQVIVNLVVNAKSAMNSGGVLTLRTYNLQVDASTIPKGMFVPDKDQVEHGEY 601

Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD 204
            +  +   G+     +   +I D    +  +     +    V  +  +    +       
Sbjct: 602 VVLEVIDTGHGM-DKQIIKKIFDPFFSTKSESYGTGLGLSTVYGIVKQTGGYVYVHSKVG 660

Query: 205 HNVVLSALLEK 215
                  LL +
Sbjct: 661 EGTKFMILLPR 671


>gi|37679852|ref|NP_934461.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37198597|dbj|BAC94432.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 569

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 17/235 (7%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      +     +   + + H++ +P+ ++   L++L +  +    + L+     SA
Sbjct: 198 LAREESERANRAK--SEFLAMMSHELRTPLNSVLGMLDVLKQSDMSAGHINLLSHMESSA 255

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +                    +   +       + +            + ++  +++  
Sbjct: 256 GLLLAIISDILDLSKIESGEFSLSPQWININDTVTFVVSQQQLVAATKGLNIELSIELDD 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      +++L NL   A     +G        ++      S+   G      +  
Sbjct: 316 KRHYWLDPSRLSQVLFNLIGNAVKFTQQGQIDIRVNLENDE-LSISVIDTGIGIEKDKIS 374

Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  D ++        +       L       +               + 
Sbjct: 375 SLFTAFKQADSSITRKFGGTGLGLAITKHLVELMSGTVRVSSQFGKGSTFVVKIP 429


>gi|65319272|ref|ZP_00392231.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
          Length = 293

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 59  MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 115

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 116 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 175

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G+     +    
Sbjct: 176 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 235

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 236 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTECIVCIP 288


>gi|261856651|ref|YP_003263934.1| integral membrane sensor signal transduction histidine kinase
           [Halothiobacillus neapolitanus c2]
 gi|261837120|gb|ACX96887.1| integral membrane sensor signal transduction histidine kinase
           [Halothiobacillus neapolitanus c2]
          Length = 653

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
                  L    L ++  + + I H+I +P+  I     LL+     ++      L  + 
Sbjct: 414 QTAERQMLQQAKLASIGEMAAGIGHEINNPLNNILTLTRLLERQLPPEKTELRTDLEDLR 473

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-------------KRVQVSWTG 106
           A        +      +                   +D               +      
Sbjct: 474 AEALRVGHIVRGVMNFARQLPPDHQPTPITQWLLDLIDRLQPEAMEADVFLNLLLDDQDC 533

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  +++LNL   A  + P  G++TI+ +   +     +  NG     PE   +
Sbjct: 534 VASFDPNQIGQVVLNLVRNAIHASPPMGEITITARSKPDSFEIEVLDNGKGI-EPEALDK 592

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLEK 215
           + D    +        +     + +   +   L  E   D   V     L +
Sbjct: 593 VFDPFFTTKSVDKGTGLGLSISLGIVQYHGGTLEIENRQDRSGVRAFMSLPR 644


>gi|224372018|ref|YP_002606183.1| putative sensorkinase/phosphatase protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223694737|gb|ACN18019.1| putative sensorkinase/phosphatase protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 875

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 63/244 (25%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
            KN+ F +  +  + ++  L   I HD  + +  I    E+L E             +  
Sbjct: 485 RKNLEFQVQQAQKMESIGNLAGGIAHDFNNLLYPIIGFAEMLIEDLPPKSPEHESAQAIF 544

Query: 57  ------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                        L F R        V     L ++ ++    I  D  +      +   
Sbjct: 545 NAGKRGCELVKQILAFSRQVDHQLSPVRFQKILAEVFKLTRSTIPSDIEIYQDIQKDCGL 604

Query: 109 -IDLSRERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLK 152
            +    +  +I +NL   A+ +                     +           + S+ 
Sbjct: 605 VMAEETQLHQIAMNLITNAYHAVEKTGGKISVQLKEITLDNDDLKDRPLQVGQYVMLSVS 664

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG      E    I D    +        +    V  +  E+K  +            +
Sbjct: 665 DNGVGI-PREIMNNIFDPYFTTKEQGKGTGLGLAVVYGILREHKGDVKVYSEVGKGTTFN 723

Query: 211 ALLE 214
             L 
Sbjct: 724 VYLP 727


>gi|224370951|ref|YP_002605115.1| cold-shock inducible two-component sensory box histidine kinase
           /regulatory protein (Ntr family protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693668|gb|ACN16951.1| cold-shock inducible two-component sensory box histidine kinase
           /regulatory protein (Ntr family protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 1036

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------L 52
           M K +      M+ + LL   I HD  + +  I    ++L E   EDE++Q         
Sbjct: 647 MEKKLYQA-QKMEAIGLLAGGIAHDFNNILSPIIGYTQILLEENSEDELLQSSLDEILTA 705

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---I 109
              +       L F R        +     + +  ++I   I     +  +   +     
Sbjct: 706 SMRAKELVKQILTFSRQGSDEMRPLKVQSIVKETLKLIRSSIPKSIEIVENIQTDCGLIK 765

Query: 110 DLSRERAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKIN 154
                  +IL+NL   A+ ++                   + T          + S+  N
Sbjct: 766 ADPTHIHQILMNLTTNAYHAMEEIGGKIEIKVQEIILEGNERTGVSFWPGKYVLMSITDN 825

Query: 155 GNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           G       +                  +    +  +  E +  +            +  L
Sbjct: 826 GCGIPLSCRDKIFEPYFTTKEKHKGTGLGLSILYGIVKECRGYIDFSSEVGKGTTFNVYL 885

Query: 214 E 214
            
Sbjct: 886 P 886


>gi|209523399|ref|ZP_03271954.1| histidine kinase [Arthrospira maxima CS-328]
 gi|209496141|gb|EDZ96441.1| histidine kinase [Arthrospira maxima CS-328]
          Length = 728

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/257 (8%), Positives = 64/257 (24%), Gaps = 44/257 (17%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + ++      +  L +   + + H++ +P+ ++    +LL       +    +  ++   
Sbjct: 311 LRQSNEKLERASQLKSEFLASMSHELRTPLNSVLGFADLLKRQNSGTLNSRQLNQVQFIE 370

Query: 58  MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S    L                      SVD      +  ++++             + 
Sbjct: 371 KSGWHLLHLINDILDLSKIESGKTELNLESVDIHELCSECLKMVQPRADKKCLALSLESD 430

Query: 107 EKIDLSR----ERAKILLNLFMVAHASLP-------------------RGGKVTISVQDS 143
            +I           +I++NL   A    P                           + DS
Sbjct: 431 YRITQVWLDRRRVRQIMINLLSNAIKFTPEGGRVRLSGHLAYGSQIEGDYRPDCSPINDS 490

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRL 197
                  ++ +G      +++  +               +   +       LA  +   +
Sbjct: 491 TPYLCLEVQDSGIGI-PQDRWHLLFQPFQQIDSSLTRRHEGTGLGLLLTKRLAELHGGTV 549

Query: 198 LPEIIDDHNVVLSALLE 214
             +   +        L 
Sbjct: 550 SLQSQVNQGSRFRVWLP 566


>gi|168703719|ref|ZP_02735996.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 902

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 65/245 (26%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
            +     L S  L +L  L   I HD  + + A+     L    L       E M+ I  
Sbjct: 517 QRYERQLLQSQKLESLGVLAGGIAHDFNNLLTAVLGYASLSRMRLPPNDPIAEDMKRIES 576

Query: 56  SSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           ++  A    + M            +VD      ++ Q++   ++    ++ + T     +
Sbjct: 577 AAQRAAELCQQMLAYAGRGQFVVRAVDLNALTQEMTQLLGAVLSKKAVLKYNLTIGLPQV 636

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQ----------------------DSKNENIF 149
             +  ++   +  +   +    G  +  +                       D       
Sbjct: 637 QADPTQLRQIVMNLITNASDAIGPKSGVITLTTGLIDADARYLTEIQAGAELDPGRYVYL 696

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            +   G      E   +I D    +      +    V  +   +K  +            
Sbjct: 697 EVSDTGCGM-SEEVRAKIFDPFFTTKFTGRGLGLAAVQGIVRAHKGAIKVYTQSGKGTTF 755

Query: 210 SALLE 214
             LL 
Sbjct: 756 KVLLP 760


>gi|218782540|ref|YP_002433858.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763924|gb|ACL06390.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 934

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 63/243 (25%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRL---- 55
           + ++       M+ V  L   I HD  + + AI    E +L E     + +  +      
Sbjct: 521 LLESQLRQSQKMEAVGTLAGGIAHDFNNILSAIMAYTEAMLMEPDDRTKNVTRLENVKKA 580

Query: 56  ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +       L F R        V       +  +++   +    ++Q         + 
Sbjct: 581 SLRARELIRQILTFSRNTEHKKTPVSLPFITREALKLLRASLPSTIKIQYRAEENMGRVM 640

Query: 113 RER---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKI 153
            +     ++L+NL   A  ++ +                                 S+  
Sbjct: 641 ADPTQIHQVLMNLCGNAEHAMRKNGGVLDVSLDTVFLPPGEAAPHVNLSPGRYIRLSVAD 700

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G     P+   +I D    +    +   +    V  +    +  +  E           
Sbjct: 701 TGQGM-SPDVKKRIFDPYYTTKEKGEGTGLGLAVVHGIVEAGQGAVTVESEVGRGACFRV 759

Query: 212 LLE 214
            L 
Sbjct: 760 YLP 762


>gi|152972966|ref|YP_001338112.1| putative histidine protein kinase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150957815|gb|ABR79845.1| putative histidine protein kinase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 761

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +   L     M  V  L   + HD  + +  I  SLEL++    +   +     ++ 
Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVEPDARDAPRLSRALKAAE 446

Query: 59  S----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R    +  +V     L ++ +++   +     +++           +
Sbjct: 447 RGALLTQRLLAFSRKQALHPQAVAMAPLLENLSELMRHSLPATLSLEIEAQSPAWPAWID 506

Query: 115 RAKIL---LNLFMVAHASL----------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++    +NL M A  ++              +VT S    ++     +  +G+     
Sbjct: 507 VGQLENALINLVMNARDAMAGRDGVIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQ 565

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               ++ +    +        +    V     ++  R+  E        +   L +
Sbjct: 566 AVKARVFEPFFTTKATGSGSGLGLSMVYGFVRQSGGRVALESAPGQGTTVRLQLPR 621


>gi|76817983|ref|YP_336784.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
 gi|76582456|gb|ABA51930.1| two-component system sensor protein [Burkholderia pseudomallei
           1710b]
          Length = 988

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 485 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 544

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 545 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 604

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 605 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 664

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 665 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 724

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 725 TVTVALP 731


>gi|86137029|ref|ZP_01055607.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
 gi|85826353|gb|EAQ46550.1| sensor histidine kinase/response regulator [Roseobacter sp. MED193]
          Length = 782

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 53/239 (22%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +      L  + + H+I +P+  +    ELL++  + DE          S  
Sbjct: 210 ARERAEAANRAKSAFL--ANMSHEIRTPMNGVVGMAELLNDTTLSDEQKLYANTIKNSGE 267

Query: 62  IRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             L  +     Y+                       +  +          + V +     
Sbjct: 268 ALLVIINDVLDYSKIEADKLVLHEEVFDLERCIHEIVMLLQPTARDKGLTILVDYDLFLP 327

Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARF 160
                      ++L NL   A      G         S            ++  G     
Sbjct: 328 TQFVGDPGRIRQVLTNLAGNAVKFTNEGHVTLRVTGISNPEEGTCAVHCMIEDTGIGIPV 387

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      + N          +   +       L    K  +  E  +         + 
Sbjct: 388 EKIDHVFGEFNQVEDERNRKFEGTGLGLAISRRLIELMKGEIWVESDEGKGSCFGFRIP 446


>gi|309789734|ref|ZP_07684314.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
 gi|308228220|gb|EFO81868.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides DG6]
          Length = 1491

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 71/245 (28%), Gaps = 33/245 (13%)

Query: 2    AKNICFNLSSMDLV-ALLC-----SRICHDIISPIGAIH----NSLELLDEV--GIEDEV 49
             +    + ++ +L  A+       + + H++ +P+ AI       LE L       +   
Sbjct: 964  ERTEDLSRANQELARAVRAKDDFLANMSHELRTPLNAILALSEGMLEQLRGPLNERQIAA 1023

Query: 50   MQLIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRV 100
            ++ I  S    +      + L+    G +D  I            +  + E      +++
Sbjct: 1024 LRNIESSGRHLLALINDILDLSKIEAGRMDLQIDQILVSDVCAASMIFIKEQASKKQQKI 1083

Query: 101  QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-----FSLKING 155
             +      +    ++ ++   L  +   ++             K +        ++   G
Sbjct: 1084 NLIQEESGLRFYADQRRLKQMLVNLLTNAVKFTPVGGQIDLIVKADASQGVLAITVADTG 1143

Query: 156  NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                  E+  ++    +          +   +    V  LA  +   +  E         
Sbjct: 1144 IGI-SDEEMQRLFKPFIQLDSGLTRQHEGTGLGLALVRRLAELHGGSVSLESTPGVGSRF 1202

Query: 210  SALLE 214
            + LL 
Sbjct: 1203 TILLP 1207


>gi|301064573|ref|ZP_07204969.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300441321|gb|EFK05690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 485

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 73/240 (30%), Gaps = 30/240 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           M++ +   L  M +     S + H++ +P+  I  +  +L +       +   +L+ ++ 
Sbjct: 248 MSERLQ-ELDEMKI--DFISHVSHELRTPLTVIKEATGMLLDGTYADSRESQQELLTITQ 304

Query: 58  MSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                      + + L+      ++ +     +  +I++ +     + +          +
Sbjct: 305 QECDRLIDSVNRILDLSRMEAKMMEYVFVPCQLSPLIQETVLKLAPIAIREEIRLQLKLQ 364

Query: 114 ER-----------AKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLAR 159
           +             ++L NL   A     +G  V++     ++ ++    S+   G   +
Sbjct: 365 DHLPLVKMDEARIKQVLENLISNALKFSSKGDTVSVRTAVQRNGQDCIQISVADTGTGIQ 424

Query: 160 FPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I D                +       +  E+   +  E            L 
Sbjct: 425 -KENLERIFDRFKRIERGKETARGTGLGLSIAKHIVTEHGGNIWAESAPGRGSTFFFTLP 483


>gi|294672858|ref|YP_003573474.1| sensory box histidine kinase [Prevotella ruminicola 23]
 gi|294473160|gb|ADE82549.1| sensory box histidine kinase [Prevotella ruminicola 23]
          Length = 914

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  + A   + + H+I +P+ AI    +LL   +E     E +++IR + 
Sbjct: 684 LKDETQRAEESGKMKAAFLANMTHEIRTPLNAIVGFSDLLPVVEEHSERMEFIRIIRNNC 743

Query: 58  MSAIIRLKFMRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +  +  A             VD      DI Q +   +     + +     +  
Sbjct: 744 DMLMRLINDILEASNVGQALAIQPEQVDFAKVFDDICQTLAQRVDEAGVLFIKDNPYETF 803

Query: 111 L----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L N    A       G + +  ++      F  +  G      ++   
Sbjct: 804 PATLDKGRIQQVLTNFTTNAIKYT-HEGHIKVGYREQDGGIYFYCEDTGAGIPKDKQAAV 862

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
                     +    +       +A   + ++  E   + H       + +
Sbjct: 863 FERFVKLNDFVQGTGLGLSICKAIAERCEGKIGVESEGEGHGSTFWMWIPR 913


>gi|15601465|ref|NP_233096.1| sensor protein TorS [Vibrio cholerae O1 biovar eltor str. N16961]
 gi|254849869|ref|ZP_05239219.1| sensor protein TorS [Vibrio cholerae MO10]
 gi|9658128|gb|AAF96608.1| sensor protein TorS [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|254845574|gb|EET23988.1| sensor protein TorS [Vibrio cholerae MO10]
          Length = 1020

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 55/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 493 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 552

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   ++                    +    T
Sbjct: 553 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVT 612

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 613 QYWQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQA 672

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 673 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 726


>gi|89069857|ref|ZP_01157191.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Oceanicola granulosus HTCC2516]
 gi|89044533|gb|EAR50652.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Oceanicola granulosus HTCC2516]
          Length = 569

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 60/237 (25%), Gaps = 26/237 (10%)

Query: 1   MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSL---ELL---DEVGIEDE 48
           M K++         S  L AL  + + + H++  P+ A+   L    LL           
Sbjct: 324 MEKSLEVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMRTYLAGARLLLNRRRTEEALA 383

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVS 103
             Q I           K ++            +            +          +  +
Sbjct: 384 SFQRIDDLIERMGAITKQLKSYARKGAEQFEPVDARAAVLSALSMMEPQLKQRTVDITRT 443

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLAR 159
              + + +  +R ++   +  +   +L           D           +++ NG    
Sbjct: 444 LPSDPVLILGDRLRLEQVIINLLRNALDATKSAEDPQIDILLAAGETVRLTVRDNGPGI- 502

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    + +    +    D   +       +  +   RL      D   V    L 
Sbjct: 503 --EDLDALFEPFYTTKQPGDGVGLGLAISSGIVTDFGGRLTARNAVDGGAVFEVRLP 557


>gi|317484882|ref|ZP_07943772.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316923864|gb|EFV45060.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 603

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 60/232 (25%), Gaps = 31/232 (13%)

Query: 13  DLVALL------CSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSS 57
           ++  L+       + + H++ +P+ AI    E L +   ED          +++  +   
Sbjct: 364 EMARLMRVRKEFVANVSHELRTPLTAIAGYAETLRDSAAEDPSICAKFAETILRNAQHMG 423

Query: 58  MSAIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 LK  R       +      +   L  +    Q       +     +        
Sbjct: 424 TMVEDLLKLSRIESGAVPMEMETVKAASILSDVTTACQPQTAAHNLTLETDIDPALTVRA 483

Query: 111 LSRERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
                 ++  NL   A          +         +   E +F +  +G      +   
Sbjct: 484 DPHFIGQVFRNLIENACRYAPEGSTIKVSGGKRLDHNGLPEALFMICDDGPGIPQADIAR 543

Query: 164 -FTQIVDGNVESTIDS-HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            F +        +  +   +       +   +  R+  E      +  +  L
Sbjct: 544 VFERFYRVEKHRSSPASTGLGLAICKHIVERHGGRIWAEPGPGGCLQFTLPL 595


>gi|325678736|ref|ZP_08158343.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324109562|gb|EGC03771.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 373

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +       +  L A +   I HD+ +P+ +I  +        + L E   +     +  
Sbjct: 132 KEEAALLAQNEQLRANMLRSISHDLRTPLTSISGNASTLLSGGDTLYESARQQIYTDIYS 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWT 105
            S     +    +       G +   I +  ++ ++++ +   +R           +   
Sbjct: 192 ESMWLIGMVENLLYATRIEDGRMQLNISVEILDDIVQEAVRHTERTHSKRNIIVDMLDEI 251

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +  +    ++++NL   A         VT++V+      + S+  +G      E+  
Sbjct: 252 IPVMADANLIVQVIVNLMDNAVKYSDENSDVTVTVRRENEYAVISVSDHGTGI-SDEEKE 310

Query: 166 QIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D        S        +       +   +   +       +  V+S  L 
Sbjct: 311 KVFDMFYTGGSRSSDSRRSLGLGLALCRSIITSHGGTISVSDNIPNGTVVSFTLP 365


>gi|282165286|ref|YP_003357671.1| putative histidine kinase [Methanocella paludicola SANAE]
 gi|282157600|dbj|BAI62688.1| putative histidine kinase [Methanocella paludicola SANAE]
          Length = 589

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 59/217 (27%), Gaps = 23/217 (10%)

Query: 22  ICHDIISPIGAIHNSLELL----------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           I H++ +P+  I    ELL           +      V + +   +       +   L  
Sbjct: 360 ISHELRNPLAIIKGYTELLYDGTLGPINDKQKDKLARVRENVDKLADMVGKMSEISSLES 419

Query: 72  GYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLF 123
                    + LGD+       +   F      + V        +  +     ++LLNL 
Sbjct: 420 RKYTVDRVPVSLGDMVSEIAETMGFLFQNKRITLNVDIPENLPLVEVDRKKMEQVLLNLL 479

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES-----TIDS 178
             A    P GG VT++ +D   + + S+   G      +                     
Sbjct: 480 NNALKYTPEGGHVTVTAEDRPADILVSVWDTGIGIPQKDLDKIFSGFYHSGYKLSYEYKG 539

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +       +   +  R+  +            + K
Sbjct: 540 PGLGLAISRKIIEGHGGRIWAKSEVGKGSTFYFTIPK 576


>gi|254410720|ref|ZP_05024498.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182075|gb|EDX77061.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 539

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           + + +   L+       L + + + + H+  +P+  I +S E+L           +    
Sbjct: 295 LEEELRVALARERELSQLKSRIVATVSHEYRTPLTTILSSTEMLQRYSDRLTPEKKQTHF 354

Query: 51  QLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           Q ++ S       +             +          + +  + +  +           
Sbjct: 355 QRVKQSVEHLTNLVNDMIFIEQAETQALEFNPTLVNIEEIVGEVIEAVRPKSAGKHSLNL 414

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           +  S     +        IL NL   A    P GG + + +     E    +   G    
Sbjct: 415 ICPSECDRVVLDGNLLRLILDNLLSNAIKYSPEGGLIEVEISPQAQEIRLRVADEGIGIP 474

Query: 160 FPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++          S I       +    V      ++ R+  E         + +L 
Sbjct: 475 PDDQGKLFKAFYRASNIGITPGVGLGLVIVKECVELHQGRVEVESEVGAGTTFTIILP 532


>gi|124266107|ref|YP_001020111.1| signal transduction histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124258882|gb|ABM93876.1| signal transduction histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 343

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 76/232 (32%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +    +L +  L AL  + + +CH+I +P+ ++H+ +++L         +        
Sbjct: 110 LRQLQTSDLQTARLAALGFMVAGVCHEITNPLTSLHSIVQILRSEKQPSPALLDKGFDNI 169

Query: 51  -----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                +++ +S              +G+         L  + Q         + ++    
Sbjct: 170 AVNVKRILDISRRLVKFSRVGDEPRYGFAVDEAIEEALYVLRQDDLLRDVELQYLRRDAG 229

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +    + +  +I LNLF+ A  ++   G + I  +++       +   G      E   
Sbjct: 230 LKVFGNTGQIREIFLNLFVNAAQAMAGRGTLRIETREAGPMVEVLVGDTGPGV-PAEAVG 288

Query: 166 QIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I +    +        +       +AHE+   L               L +
Sbjct: 289 RIFEPFFTTKSSMHGTGLGLAISTEIAHEHGGSLSLRHTGSEGATFCVALPR 340


>gi|94270344|ref|ZP_01291716.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450841|gb|EAT01870.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 63/254 (24%), Gaps = 40/254 (15%)

Query: 1   MAKNICF---NLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIED 47
           M  N       + + +L           +   + + H+I +P+  +     LL    + D
Sbjct: 144 MESNRRLGEAAVQAEELAREAQAANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDLSD 203

Query: 48  EVMQLIRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------- 93
           E     ++   S         + +  +    G ++         ++I++           
Sbjct: 204 EQRSYAQIIMSSGQALLELINQILDFSKIEAGRLELDCRPFSPRELIQEVAVLLQPQAAA 263

Query: 94  --IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKN 145
             I +   V                ++LLNL   A      GG                 
Sbjct: 264 QNITLTSEVSPGVPAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPADPAAPHC 323

Query: 146 ENIFSLKINGNLARFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPE 200
              F++K +G      +    F +    +           +       L       +  E
Sbjct: 324 SLHFAVKDSGIGIPAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVE 383

Query: 201 IIDDHNVVLSALLE 214
             +         + 
Sbjct: 384 SEEGKGSTFWFTVP 397


>gi|89069260|ref|ZP_01156627.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
 gi|89045258|gb|EAR51325.1| two-component hybrid sensor and regulator [Oceanicola granulosus
           HTCC2516]
          Length = 460

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           + +      +S    +   S + H++ +P+ +I  +L +L+      ++    +L+ ++ 
Sbjct: 207 LEEAQVRAQASDKSKSEFISTVSHELRTPLTSIKGALAMLESGKFAELDGSAKRLLEMAL 266

Query: 58  MSAIIRLKFMRLAFGYTGSVD---------------SLIGLGDIEQVIEDFIAVDKRVQV 102
            +A +    +     +                        +  I+    D     +    
Sbjct: 267 KNAEVLHLLVDDLLDFGKLATGGLEIRPCATDIAGLVQDEVDRIDSYDADRQVECRYTGE 326

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                        A+++ NL   A    P GGKV +SV++        +K  G     P 
Sbjct: 327 RGPLFAHADPARIAQVVRNLLSNALKFSPVGGKVFVSVRERCGAIRVEVKDFGCGI-PPC 385

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +                 +       +   +  R+               L 
Sbjct: 386 DQERIFEKFTQIDSSNTRQHSGAGLGLAISKEIVEAHDGRIGVTSAPGRGSAFYIDLP 443


>gi|294630228|ref|ZP_06708788.1| sensor histidine kinase TcrS [Streptomyces sp. e14]
 gi|292833561|gb|EFF91910.1| sensor histidine kinase TcrS [Streptomyces sp. e14]
          Length = 541

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 20/226 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAII 62
              S   V    +   H++ +P+ +I    EL               +  I   +    +
Sbjct: 281 RQQSETRVRQFVADASHELRTPLASIRGYAELTRRGREEVGPDTRHALGRIESEAGRMTL 340

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--------- 113
            ++ + L               D+  ++ D ++  +                        
Sbjct: 341 LVEDLLLLARLDAGRPLRFEHTDLVPLVVDTVSDARAAGRDHNWRLDLPDEPALVSADAA 400

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDG 170
              ++L+NL   A    P G  VT  V+ +       ++ +G        P  F +   G
Sbjct: 401 RLQQVLVNLLANARTHTPPGTTVTARVRHAGPWLCVDVQDDGPGIPAELLPRVFERFARG 460

Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        S  +    V  +A  +   +  +       V +  L 
Sbjct: 461 DSARSRATGSTGLGLAIVQAVATAHGGAVTVDSEPGR-TVFTVHLP 505


>gi|269839401|ref|YP_003324093.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791131|gb|ACZ43271.1| multi-sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 709

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 19/231 (8%), Positives = 60/231 (25%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
              +   + S ++L     +   H++ +PI  +    ++L +   E  + + + + +   
Sbjct: 468 RSELLRQIESALELRNQFIATASHELKTPITLLKGYAQVLMDRSREGVLRRPLEIINRQV 527

Query: 61  IIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEK 108
               + +      +             +     + +V+ D        ++          
Sbjct: 528 DRMSELINDLLDVSKIEAGKLELVLRKVELTDAVREVVMDQREAASGFEIELLAAEPVWV 587

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +       +++ N    A        +V + V+    E   S+   G      ++     
Sbjct: 588 LGDRNRLQQVVANFISNAVKYSGNSRRVIVEVRRDGPEVEVSVTDYGIGIPEDQQPEVFG 647

Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +  Y    +   +  R+     +         L 
Sbjct: 648 LYFRGRNVSPRHYSGLGLGLYICRNIVERHGGRIGMSSREGEGSRFWFRLP 698


>gi|254932175|ref|ZP_05265534.1| sensor histidine kinase [Listeria monocytogenes HPB2262]
 gi|293583732|gb|EFF95764.1| sensor histidine kinase [Listeria monocytogenes HPB2262]
 gi|332313012|gb|EGJ26107.1| Sensor histidine kinase [Listeria monocytogenes str. Scott A]
          Length = 459

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 67/235 (28%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           MA  +     S        + + H++ SP+ ++     LL         + E + ++   
Sbjct: 228 MASELK---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSVTLTEKEQAEYLTVLSEE 284

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +       K +          +                  + ++   +K + ++     +
Sbjct: 285 TTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKELTINLDLADV 344

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           + + +     ++  NL   A    P+GG + + + +        ++ +G      E   +
Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDSGVGI-GKEDMAK 403

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I D              S  +       +   +   +  +   +        L K
Sbjct: 404 IFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGTTFKVKLPK 458


>gi|94968841|ref|YP_590889.1| response regulator receiver sensor signal transduction histidine
           kinase [Candidatus Koribacter versatilis Ellin345]
 gi|94550891|gb|ABF40815.1| response regulator receiver sensor signal transduction histidine
           kinase [Candidatus Koribacter versatilis Ellin345]
          Length = 381

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 66/233 (28%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
            +     + +  +  L  L + + H+I +P+ ++ N L LL    +       ++++ + 
Sbjct: 128 KRAEEALMHNEKIAMLGRLAATVAHEINNPLSSVTNVLYLLSTQPELTNDSRILIEMAQT 187

Query: 56  SSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKI 109
                               +   +D    L  +  + +  I     V   +V +  +  
Sbjct: 188 ELKRVAEISHQTLSFYRESPHAVPIDIAELLEGVLWLFDRQIREKDMVVERRVEYRKKFP 247

Query: 110 DLSRERAKILLNLFMVAHAS------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               E  + L NL   A  +      +      T      +    F +  +G      ++
Sbjct: 248 AFPGELRQALCNLVSNAIQAIPPNGRMVLRVHETTRRNTGERGLSFIIADSGGGIAPEDR 307

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214
           F            +   +  +    +  +++  +              S  L 
Sbjct: 308 FHIFEPFFSTKGENGTGLGLWVTKGVVEKHRGTIRMRSRQGENSGTTFSIFLP 360


>gi|117925226|ref|YP_865843.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608982|gb|ABK44437.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 791

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 69/239 (28%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      SS    +   + + H+I +P+ AI    ELL E  +  E  +L+ +   +A
Sbjct: 366 LQQARDRAESSNRAKSEFLALMSHEIRTPMNAILGMSELLAESNLSGEQRELLTVQRRAA 425

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SW 104
           +  L                + L        D  I + D+ +       +   + +    
Sbjct: 426 LALLDLINDILDLSRVESGRLELDHAPMHLPDFFIEIQDLFRQQAIKKNLAFSITLEDDL 485

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
                       ++++NL   A               +S Q    +  FS+  +G     
Sbjct: 486 PKTYFADRARLRQVMINLVGNAIKFTQQGGVWISVERLSQQGEMVKLKFSVVDSGCGI-P 544

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E  +QI +                 +       L       L  E   +     S +L
Sbjct: 545 SEAQSQIFEPFTQADAYVTRHHGGTGLGLTISQRLVQLFGGTLQVESTPNQGSRFSFIL 603


>gi|330504046|ref|YP_004380915.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
 gi|328918332|gb|AEB59163.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina NK-01]
          Length = 916

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 58/238 (24%), Gaps = 27/238 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               L +  + +   + + H+I +P+  I     LL +  +       +     SA   L
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLSTIEKSADSLL 333

Query: 65  KFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK 108
             +     ++              +    L D   ++       +      +        
Sbjct: 334 GIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELVSLIYRDTPLAL 393

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164
                   ++L NL   A      G  V  ++ + ++    +   S+   G      +  
Sbjct: 394 RGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESTDSAQLRISVMDTGIGLSDEDLR 453

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLEK 215
                 +              +       L  +    +  +           +  L K
Sbjct: 454 ALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWITLTLPK 511


>gi|326389794|ref|ZP_08211358.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994062|gb|EGD52490.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 457

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50
           +AK     L  +        +  S   H++ +PI  I   +++LD  G ED+ +      
Sbjct: 219 LAKTFNDMLDRLEDSFKRQNMFVSDASHELRTPISVIKGYIDMLDRWGKEDKAVLQEAIE 278

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV 102
              +            L   +              L D+ +     +     + +  V+ 
Sbjct: 279 AIKRETLDMEHLIERLLLLAKGDNKSIKLNKEQFNLKDVIKEVAEEIKMLNESKNIVVKG 338

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +   +++      A       G + I V    ++    +K +G      +
Sbjct: 339 QNDINITADKKLIKELIRIFLDNAAKYTSSDGNIEIDVGKDNSKAYIKIKDDGIGIPQED 398

Query: 163 K---FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +           +       +  E+K  +  +         +  L 
Sbjct: 399 IPHIFDRFYRVDKARAKETGGAGLGLAIAKWIIEEHKGSVTVKSEVGKGSEFTITLP 455


>gi|307245847|ref|ZP_07527932.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254820|ref|ZP_07536646.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307259262|ref|ZP_07540991.1| hypothetical protein appser11_10590 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307263601|ref|ZP_07545215.1| hypothetical protein appser13_10180 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306853207|gb|EFM85427.1| hypothetical protein appser1_10490 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862191|gb|EFM94159.1| hypothetical protein appser9_10580 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306866629|gb|EFM98488.1| hypothetical protein appser11_10590 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306871064|gb|EFN02794.1| hypothetical protein appser13_10180 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 586

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I     +L E  + D+  + ++  ++SA+              
Sbjct: 86  SVLMATISHELRTPLNGIIGLSRILLEGELTDQQREYLKTINISAVSLGHIFSDIIDLEK 145

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                       ++ I                 +   ++IL
Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
            NL   A    P GG + +SV+   N    FSL+  G      E+               
Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQRKVFAMFYQAENSQE 265

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L            +  ++
Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLRSEMGKGSTFTLTIQ 306


>gi|262277653|ref|ZP_06055446.1| phosphate regulon [alpha proteobacterium HIMB114]
 gi|262224756|gb|EEY75215.1| phosphate regulon [alpha proteobacterium HIMB114]
          Length = 380

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 66/234 (28%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           +++   L    L +   + + H++ +P+ +I   LE +       +   + + + +++  
Sbjct: 144 QDLTDLLKIEKLKSDFVANVSHELRTPLQSIKLGLETITDGPAKSDNAAKQKFLNIMKNE 203

Query: 57  SMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +      +  +           +         D +  +    + +     +     +S  
Sbjct: 204 TNRMDQLITDLLTLSKIEQEEHKRPNDKVNVKDIINIVISNLETLSQNKKIKISNLISSD 263

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162
              +    +  ++  N+   A        ++++  +   +     +   G          
Sbjct: 264 KIVLGDHNKLIEVFYNIIENAIKYSDENKEISVHAEIKDDFVEIKIIDQGYGIPKTSLGR 323

Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           I    +    V  L ++++ +L      D        L 
Sbjct: 324 VTERFFRVDPEKSKKIGGTGLGLAIVKHLINQHRGQLNIRSELDKGSEFEIKLP 377


>gi|257438017|ref|ZP_05613772.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
 gi|313115943|ref|ZP_07801370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|257199677|gb|EEU97961.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
 gi|310621707|gb|EFQ05235.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 347

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +   E             +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +       +  E  +         L K
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341


>gi|253580440|ref|ZP_04857705.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848170|gb|EES76135.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 227

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 61/223 (27%), Gaps = 13/223 (5%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-------EDEVMQLIRLS 56
            I     S      L SR+ H+I +P+  I++ L+L+             D +M  +   
Sbjct: 2   QIEITKQSEKDFRFLLSRLSHEIRNPVTLINSELQLMASSHPELCSYRQWDSLMDNLEYV 61

Query: 57  SMSAIIRLKFMRLAFGYTGSVD----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                    F          V+        L   +  ++      +      +       
Sbjct: 62  KELLKELSDFSHAQTVTLVPVNPAEFLTTVLSCQKNTLDYLGIRLEIHVEHTSSPVFLDR 121

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +  +++ NL   +  ++ + G   I     + +     +K NG      ++   I    
Sbjct: 122 IKMRQVIFNLIKNSCEAIDQPGGKIIVNLTPADSGICICIKDNGCGM-THKQTENIFHPF 180

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +   +       +   +  ++               L 
Sbjct: 181 ITYKPEGTGLGLAVTAEIISAHHGQIRVSSTPGQGSAFYIYLP 223


>gi|283796728|ref|ZP_06345881.1| sensor histidine kinase [Clostridium sp. M62/1]
 gi|291075612|gb|EFE12976.1| sensor histidine kinase [Clostridium sp. M62/1]
          Length = 347

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +   E             +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +       +  E  +         L K
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 341


>gi|225378511|ref|ZP_03755732.1| hypothetical protein ROSEINA2194_04179 [Roseburia inulinivorans DSM
           16841]
 gi|225209614|gb|EEG91968.1| hypothetical protein ROSEINA2194_04179 [Roseburia inulinivorans DSM
           16841]
          Length = 304

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 85  FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 144

Query: 78  DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +   E             +   +   +   QV     K   +      I +NL  
Sbjct: 145 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 204

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 205 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 264

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +       +  E  +         L K
Sbjct: 265 GLALVKRIVDSAGGTIKAENREYGGCRFVIELPK 298


>gi|254467598|ref|ZP_05081007.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
 gi|206684346|gb|EDZ44830.1| periplasmic sensor hybrid histidine kinase [Rhodobacterales
           bacterium Y4I]
          Length = 761

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/247 (9%), Positives = 58/247 (23%), Gaps = 35/247 (14%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
                F L      A +         + + H+I +P+  +    ELL E  ++D+     
Sbjct: 219 RDEREFALEQAREAADIANRAKSEFLANMSHEIRTPMNGVIGMAELLQETRLDDDQRMYA 278

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VD 97
                S    L  +     ++      + L      ++  +                 V 
Sbjct: 279 ETIGKSGSALLTIINDILNFSKIEAGKLELSCAPFNLQTAVEDVVTLLSPKAAEKGVEVT 338

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKI 153
            R   +        +    +++ N+   A                +  D        +  
Sbjct: 339 MRYDPALPELFEGDAGRIRQVITNIAGNAVKFTCEGYVFIEVTGTAQPDGGLLVRLQVTD 398

Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G      ++  +I               +   +       L       +  + +     
Sbjct: 399 TGIGI-AQDRIGRIFRAFEQADNAATRNFEGTGLGLAISSRLLELMGGSVEVQSVPGKGS 457

Query: 208 VLSALLE 214
           V +  + 
Sbjct: 458 VFTIQIP 464


>gi|53729018|ref|ZP_00134277.2| COG0642: Signal transduction histidine kinase [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208411|ref|YP_001053636.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae L20]
 gi|190150262|ref|YP_001968787.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|126097203|gb|ABN74031.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|189915393|gb|ACE61645.1| aerobic respiration control sensor protein [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 616

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I     +L E  + D+  + ++  ++SA+              
Sbjct: 116 SVLMATISHELRTPLNGIIGLSRILLEGELTDQQREYLKTINISAVSLGHIFSDIIDLEK 175

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                       ++ I                 +   ++IL
Sbjct: 176 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 235

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
            NL   A    P GG + +SV+   N    FSL+  G      E+               
Sbjct: 236 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLRDTGIGIPKHEQRKVFAMFYQAENSQE 295

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L            +  ++
Sbjct: 296 RKAQGSGIGLAISKRIAKLMGGDLTLRSEMGKGSTFTLTIQ 336


>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
 gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
           GP-6]
          Length = 808

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 58/239 (24%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++     ++ +  +   + + H+I +P+ A+     +L    +  E    + +   S 
Sbjct: 407 LRRSKEAAEAATNAKSEFLANMSHEIRTPLNAVIGLTGILLGTDLNREQRDHMEIIRSSG 466

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
                                       D    + D   ++              ++ S 
Sbjct: 467 DALLAIINDILDFSKIDSGKMELEVQPFDVKKSIEDAVDLMAPVAQEKGLTLGYDIEESI 526

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160
               +       +IL+N+   A      G          +   ++E  F++   G     
Sbjct: 527 PKTIVSDPTRLRQILVNILGNAVKFTSSGEVRILVSGRDLGGREHEIHFAVMDTGIGIPA 586

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +           +       L       +  E  +         ++
Sbjct: 587 EKMNCLFQSFCQVEPCTTRRYGGAGLGLAISKRLVELMDGSIWAESEEGKGSTFHFTIK 645


>gi|330811069|ref|YP_004355531.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379177|gb|AEA70527.1| Putative histidine kinase, Hybrid [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 633

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 69/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           MA+ I     +       +   + + H++ +P+  +   L+LL+   + DE  +   L+S
Sbjct: 248 MAQLIKTREEAEKANSAKSEFLAMMSHELRTPMNGVLGMLQLLETTRMTDEQHEYTALAS 307

Query: 58  MSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S                     + L        + +       Q       +   + V 
Sbjct: 308 ESTEHLLKVINDILDFSRIERSALELEHIPFNLAELVSSCAQSFQHSAAQRKLGLDLLVP 367

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGN 156
              + + +  +  +I   L  +   +L    +  ++VQ               +++ +G 
Sbjct: 368 DDMQALQVQGDPTRIRQILVNLIGNALKFTEQGRVTVQCQWQALDHELLWFTCTVRDSGI 427

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E   ++ D                 +       LA      L  +  +    V +
Sbjct: 428 GI-PAESLERMFDAFQQADNSISRRYGGTGLGLPIARTLAERMGGTLRAQSEEGQGSVFT 486

Query: 211 ALLE 214
             + 
Sbjct: 487 LEIP 490


>gi|290959132|ref|YP_003490314.1| two component system sensor kinase [Streptomyces scabiei 87.22]
 gi|260648658|emb|CBG71771.1| putative two component system sensor kinase [Streptomyces scabiei
           87.22]
          Length = 572

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 20/217 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              +   H++ +P+ +I    EL               +  I   S    + ++ + L  
Sbjct: 305 QFVADASHELRTPLASIRGYAELTRRGREEIGPDTRHALGRIESESGRMTMLVEDLLLLA 364

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRER---AKILLNL 122
                        D+  ++ D ++           ++        +S +     ++L+NL
Sbjct: 365 RLDAGRPLQFEQTDLIPLVVDTVSDARVAGRSHSWRLDLPDVPALVSADAARLQQVLVNL 424

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVEST--ID 177
              A    P G  VT  VQ         ++ +G        P  F +   G+   +    
Sbjct: 425 LANARTHTPPGTTVTARVQRRGPWMCVDVEDDGQGIPEELLPHVFERFARGDSSRSRASG 484

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S  +    V  +A  +   +  + +     V +  L 
Sbjct: 485 STGLGLAIVQAVADAHGGAVTVDSVPGR-TVFTVHLP 520


>gi|251790598|ref|YP_003005319.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya zeae Ech1591]
 gi|247539219|gb|ACT07840.1| histidine kinase [Dickeya zeae Ech1591]
          Length = 955

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 454 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDANRLVTAM 513

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
             S+ + LK +     ++      + +   E    + I                     +
Sbjct: 514 QNSSALLLKIISDILDFSKIESEQLKIEPSEFAPREVINHILNNYLPLVVKKRLELYCYI 573

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             +     +  +    ++L NL   A      G  V       +   +F ++  G     
Sbjct: 574 DPNVPSRLMGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACSDEGYLVFKVRDTGVGIDT 633

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       +       L       +  E            + 
Sbjct: 634 RSVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEFGIRIP 692


>gi|238756866|ref|ZP_04618054.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
 gi|238704696|gb|EEP97225.1| PAS/PAC domain [Yersinia aldovae ATCC 35236]
          Length = 1334

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 60/242 (24%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57
           +         +    +   + + H++ +P+ AI   L LL + G+ ++       S    
Sbjct: 569 LQSARQAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRKTGLNNKQADYAVKSEAAT 628

Query: 58  ----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSW 104
                     L F ++  G          +  +           +    + V   +  + 
Sbjct: 629 RTLLRLLNDILDFSKIEAGKMVLECIPFDIHVMLRDLAVILSSNLKIKKVEVLFDIDPTL 688

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160
                  S    +IL NL   A     +G  V           +    F ++  G     
Sbjct: 689 PQFVEGDSMRLQQILTNLGGNALKFTEQGEVVLFIKVLKQDSQQVTLHFGVRDTGIGI-A 747

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSAL 212
           PE    I  G                +              RL  E       +   +  
Sbjct: 748 PEHQESIFGGFTQAEASTTRRFGGTGLGLVISQRFVALMGGRLELESQPGQGSLFHFTIT 807

Query: 213 LE 214
           L 
Sbjct: 808 LP 809


>gi|196233948|ref|ZP_03132785.1| integral membrane sensor signal transduction histidine kinase
           [Chthoniobacter flavus Ellin428]
 gi|196221997|gb|EDY16530.1| integral membrane sensor signal transduction histidine kinase
           [Chthoniobacter flavus Ellin428]
          Length = 695

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 26/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56
            + +       D      S + H++ +P+ +I    EL+            + +++I + 
Sbjct: 456 RRQLALAQQKTD----FVSNVSHELKTPLTSIRMFAELMQNGNGGSTEKYPQYLRIIMVE 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +      +  +                    + + +       + +  +G          
Sbjct: 512 AERLTRLINNVLDFARLERKQKQFDKKPLDLRSVVERTWEGHALHLQESGFTTRWQAAPG 571

Query: 117 ------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +IL+NL   A        +V +           S+   G      ++ 
Sbjct: 572 PYPVIGDEDALAQILVNLLSNAEKYAGERKEVELHSYLDGGHACVSVLDRGIGVPPGDER 631

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         S I    +       LA E+   +L +   +     +  + 
Sbjct: 632 KIFESFYRAHDSLSSGIQGSGLGLTLAQQLAREHGGEILYQPRLEGGSNFTLRVP 686


>gi|126444558|ref|YP_001061186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
 gi|126224049|gb|ABN87554.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 668]
          Length = 1014

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 630

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 631 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 751 TVTVALP 757


>gi|189423631|ref|YP_001950808.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419890|gb|ACD94288.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 940

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 58/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S         + + H+I +P+  I +   LL    +  E  + +    +S+ 
Sbjct: 554 AKERAEAASRAK--TEFLANMSHEIRTPMNGIISMAHLLRMTELTSEQQEYLASLQISSK 611

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +  A     +    +    + ++ +  + +   +     
Sbjct: 612 NLLALISDILDISKIEAGKLELEYADFSVRATIEEVVASQMPRITQKRLDICTELSDGLP 671

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
              +  S    +ILLNL   A     +          +  D++      +   G     P
Sbjct: 672 EILLGDSLRFKQILLNLLGNAIKFTEQGGISIVAKPSARHDNQLIMRIMIADTGIGM-SP 730

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++                   +       L      R+               L 
Sbjct: 731 EVLERVFSPFEQADSSTTRKYGGTGLGLSICRRLVELMGGRIWAASRPGSGSTFFVELP 789


>gi|51245777|ref|YP_065661.1| Ntr family two-component system sensory/regulatory protein
           [Desulfotalea psychrophila LSv54]
 gi|50876814|emb|CAG36654.1| related to two-component system sensory/regulatory protein (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 1018

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 62/240 (25%), Gaps = 29/240 (12%)

Query: 4   NICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53
            +   L  +  + A+  L   I HD  + +  I    EL  +    + V++         
Sbjct: 636 KLEMQLQQAQKMEAIGTLAGGIAHDFNNILAVILGYAELAKDEVPANSVIEKDLDQVIVG 695

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +       L F R        +   + L +  +++   +     +Q         + 
Sbjct: 696 GNRAKELVKQILAFSRQEKVERLPMKVQVLLKEAMRMLRPSLPSTIEIQTEIDPLCGFIL 755

Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDS--------------KNENIFSLKING 155
            +     +I++NL   A+ ++ + G                        +  +  +   G
Sbjct: 756 ADPTQVHQIIMNLCTNANHAMDKSGGRLHIELKRISIDEENEHSSLRSGDYVVLVVADTG 815

Query: 156 NLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               I     +    +  +  E   R+    +  H    S    
Sbjct: 816 KGIAPDNIGKIFEPYFTTKEIGKGTGMGLATIHGIIREYGGRIDVVSVPGHGAAFSVYFP 875


>gi|319404182|emb|CBI77775.1| Sensor protein [Bartonella rochalimae ATCC BAA-1498]
          Length = 850

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 62/241 (25%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
               + S  + A+  L   I HD  + + AI  S + L             +  I+ ++ 
Sbjct: 463 EDKMIQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNTHRSSDPAYADLINIKNNAN 522

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---- 114
            A   ++ +             +   ++   I + I       +           +    
Sbjct: 523 RAAALVQQLLAFSRKQTLRPQKVDFTELLSDIRNLILPLLGNNIQLKIIHGKDLWDVKVD 582

Query: 115 ---RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGN 156
                ++++NL + A  ++                +  +   +          ++   G 
Sbjct: 583 QASFQRVIMNLVINARDAMLDGGIVTITTNNITKQQSAEFDYAGFVVDEYVQLTISDTGT 642

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    ++ +    +        +    V  +  +    +  +  +         L 
Sbjct: 643 GIPAV-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGYIYCDSQEGEGTTFHIFLP 701

Query: 215 K 215
           +
Sbjct: 702 R 702


>gi|301161754|emb|CBW21294.1| putative histidine kinase [Bacteroides fragilis 638R]
          Length = 389

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK      + +     L + + H+I +P+ A+     LL   D+   + E + LI+ ++ 
Sbjct: 156 AKEKAEEANRLKSA--LIANMNHEIRTPLNAVVGFASLLSIIDDEKEQQEYIGLIQSNTE 213

Query: 59  SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106
             +  +  +              GS   L  L    ++     A    + ++W       
Sbjct: 214 HLLRLMNDVIDLSNIESGVMDIVGSDVVLDSLMKEMELTYVPKAETNNLVLAWDREQSNA 273

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     +IL +L   A     +G       +    +  F +   G      +    
Sbjct: 274 HIYTDRDRLIQILEHLLDNAIKFTTKGTVRWGYQEKENGQIRFYVTDTGCGIPNDKKEVI 333

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F + V  +  +      +      ++       +  E            + 
Sbjct: 334 FERFVKLDSFTQ--GLGLGLSLCKIIIERMHGTIGVESEVGEGSTFWFTIP 382


>gi|229016645|ref|ZP_04173582.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273]
 gi|229022860|ref|ZP_04179380.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272]
 gi|228738395|gb|EEL88871.1| hypothetical protein bcere0029_12060 [Bacillus cereus AH1272]
 gi|228744635|gb|EEL94700.1| hypothetical protein bcere0030_12160 [Bacillus cereus AH1273]
          Length = 466

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 59/215 (27%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYELQFIEKKLRISTNLNPEIIVMIDDDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIIITLKQIDDYCELHIKDTGIGIDTEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +      E        +   L+
Sbjct: 424 GLGLAIVRQIVHIHDGEWRIESEKGKGTTVIIKLK 458


>gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1078

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/247 (9%), Positives = 63/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
           + K     L + +             + + H+I +P+  I   ++LL +      +++ +
Sbjct: 682 LKKTEAALLEAKETAETANRVKTEFLANMSHEIRTPLNGILGMMQLLRQTSLEPEQEKYV 741

Query: 51  QLIRLSSMSAIIR-------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
           +L   S+                      +  A      +   +         E  + + 
Sbjct: 742 ELSITSAARLTRLLADILDISRIEAGKMSLFNAPFSAAELVDSVVELFAVPAREKGLRLR 801

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLK 152
             +        +       +IL NL   A     +G          +           + 
Sbjct: 802 CAIHPGLPPLLVGDEARVRQILFNLVGNALKYTEQGDITLELFARDADLCRSECMCIRVV 861

Query: 153 INGNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G            +  + V+G+   + +   +    V  L    +  +  +       
Sbjct: 862 DTGVGIPAHMLSGVFEPFRQVEGSHTRSYEGAGLGLAIVQRLVELMQGEISVQSEPGAGT 921

Query: 208 VLSALLE 214
            +   L 
Sbjct: 922 AVLVSLP 928


>gi|225414556|ref|ZP_03761745.1| hypothetical protein CLOSTASPAR_05779 [Clostridium asparagiforme
           DSM 15981]
 gi|225041912|gb|EEG52158.1| hypothetical protein CLOSTASPAR_05779 [Clostridium asparagiforme
           DSM 15981]
          Length = 465

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 1   MAKNICF---NLSSMD-LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           M++++      +     +     S   H++ +PI +I    ELL+     +  ++ +   
Sbjct: 225 MSRDVEEYLARIEKEKQIRQEFFSNASHELKTPITSIQGYAELLEGGLIRDENMQRDFAG 284

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQV 102
            I+  ++     +  + +          ++                +     A    + +
Sbjct: 285 RIKKEAVRMTGLINDILMISRLETKEAEVVMTDVRVSVLLEEIVGGLKPQAAAGQVFIHI 344

Query: 103 SWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                 I  + +  + +  NL   A      GG+V ++V++S  + +  ++ NG      
Sbjct: 345 DCQPLMIRANAQHMRELFTNLIGNAVKYNRPGGQVWVNVRESDRQMVARVRDNGVGI-PE 403

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I +                 +    V  +       +  E   D        L 
Sbjct: 404 DSLDRIFERFYRVDKGRSRKQGGTGLGLSIVKHIVGYYHGTIRVESKLDEGSEFVVTLP 462


>gi|167769574|ref|ZP_02441627.1| hypothetical protein ANACOL_00908 [Anaerotruncus colihominis DSM
           17241]
 gi|167668542|gb|EDS12672.1| hypothetical protein ANACOL_00908 [Anaerotruncus colihominis DSM
           17241]
          Length = 453

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 61/216 (28%), Gaps = 18/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIR------------ 63
              S   H++ +P   I +  E  L +   E E  + + +    A               
Sbjct: 230 QFSSDASHELRTPTAVIISQCEYALSDAVDEAERRESLGVVLRQARRMSAIISQLLLLAR 289

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                   ++      +    +    +       +   +Q+              ++L N
Sbjct: 290 AENGKFEPSWERLNLSELCEMVLLEMEDTAQSQGIALEMQLEPDIMLTGDQTLLMRLLTN 349

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178
           L   A     +GG+V + ++  +   +  +   G   R  +    +++    +   +   
Sbjct: 350 LITNAIRYNRKGGRVEVCLRRMETGAVLRVADTGVGIREEDLPKIWSRFFRADASRSSTG 409

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +A  +   +  E +     V +  + 
Sbjct: 410 TGLGLSMARWIAQVHGGTITVESVYGQGSVFTVTIP 445


>gi|78356727|ref|YP_388176.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219132|gb|ABB38481.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 581

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 70/229 (30%), Gaps = 18/229 (7%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           + +  +LS +  L A+  L + + H+I +P+ A+    +   +   +    ++   + + 
Sbjct: 335 RTLEKSLSDAEKLAAVGTLAAGVAHEIRNPLSALRGFAQYFAKKFKDRHPEEVYAQTMVR 394

Query: 60  A--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGEKI 109
                       L   R        V     + ++E ++   +   K   V      E  
Sbjct: 395 EADRLNRVITDLLYLARPRRVTPRLVRLRALVSEVEDLVRFDLDERKVNMVVSLGPEEVW 454

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFT 165
                  + +LNL + +  +L         V  +    K+     ++   N     E+  
Sbjct: 455 ADEDTLKQAVLNLVLNSLDALKETDGGARQVDVASGLAKDGVWLFVRDTANGM-TKEQAE 513

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           Q  +    +      +    V     ++  + + +    H   +     
Sbjct: 514 QAFEPFYTTKKKGTGLGLALVHKTMRDHGGKAIIDTAPGHGTTVGLFFP 562


>gi|71909646|ref|YP_287233.1| response regulator receiver:ATP-binding region,
           ATPase-like:histidine kinase, HAMP region:histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
 gi|71849267|gb|AAZ48763.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           kinase A, N-terminal [Dechloromonas aromatica RCB]
          Length = 659

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 59/243 (24%), Gaps = 32/243 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S     +   S + H++ +P+ AI     +L     +   +  +     +A 
Sbjct: 261 AKEAAEAASRAK--STFLSNMSHELRTPMNAIIGMTYMLKRQNADPLQVDKLGKIDNAAN 318

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKI 109
             L+ +      +      + L                 +     +   R  +       
Sbjct: 319 HLLQLLNDVLDLSKIDAERMTLEQTAFSIPELAADVASLLTPRAESARLRFILDVDSRLK 378

Query: 110 D-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                       ++LLNL   A     RG    ++     +        S++  G     
Sbjct: 379 GLRLLGDPLRLQQVLLNLAGNAIKFTERGEVRIVARVVEDDEKAVHIELSVRDTGIGI-A 437

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VLSAL 212
           PE   +I +                 +       L       +              +  
Sbjct: 438 PEAIGRIFNPFEQADGSTTRKYGGTGLGLPICQRLVRLMGGEIQVVSTPGAGSEFTFTVR 497

Query: 213 LEK 215
           L++
Sbjct: 498 LQR 500


>gi|326798783|ref|YP_004316602.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
 gi|326549547|gb|ADZ77932.1| integral membrane sensor signal transduction histidine kinase
           [Sphingobacterium sp. 21]
          Length = 341

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 66/242 (27%), Gaps = 28/242 (11%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLE------LLDEVGIEDEVMQ 51
           A+     + ++           S I H+  +P+ AI   LE      + ++    +  +Q
Sbjct: 99  AREKKIEIDALKNQEQFRREFLSNISHEFKTPLFAIQGYLEAVQDGLMYEDPERAEVFLQ 158

Query: 52  LIRLSSMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
               +       +K +            + +        +  + +  ++  +   ++   
Sbjct: 159 KASNNIDRLSYLIKDLDEIAKLESGEIKINYQRFDLSLLVKEVMESLELKAEKHDIELIF 218

Query: 101 QVSWTGEKIDLSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +  ++      +      ++L+NL   +       G   I   +  ++ +  +  +G   
Sbjct: 219 KQKYSYPIFVNADREKIRQVLVNLISNSIKYGKEKGHTYIKTYELHDQVLIEVTDDGIGI 278

Query: 159 RFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                                 I    +    V  +   ++  +     +         L
Sbjct: 279 EEKYLPRLFERFFRTDRSRSRQIGGSGLGLAIVKHILEAHQQTISVRSTEGLGSTFGFTL 338

Query: 214 EK 215
            K
Sbjct: 339 AK 340


>gi|295402180|ref|ZP_06812138.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294975771|gb|EFG51391.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 442

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 56/219 (25%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSMSAIIRLKFMRL-- 69
             +   H++ +P+    +SLE+++    +       +V   ++         +  +    
Sbjct: 220 FVANASHELRTPLSIFQSSLEVIEADERDKLGEFSLQVFDDMKDELRRMTKLINDLLWLA 279

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                       +      +  L    + + +   +     +              +++ 
Sbjct: 280 RSDANAIELTKEWFLLPPVIDELIRKCRPLAEQKHIKFVTNIQKDMAIYGDKERIIQLIF 339

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175
            L   A       G++ I+V+  +      +   G      +    F +      +    
Sbjct: 340 ILLDNAVKYNTENGQIKIAVERDRKNVNIEISDTGIGIPVEQQALIFERFYRADPSRSRK 399

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + I       +   +   +  +  +         L 
Sbjct: 400 QQGNGIGLSIAKWIVDAHGGTIRVQSEEGKGSRFIVTLP 438


>gi|226198683|ref|ZP_03794247.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
 gi|225929123|gb|EEH25146.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei Pakistan 9]
          Length = 1032

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 529 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 588

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 589 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 648

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 649 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 708

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 709 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 768

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 769 TVTVALP 775


>gi|254444094|ref|ZP_05057570.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198258402|gb|EDY82710.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 658

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + +       S  + A+  L   I HD  + +  I +  +L    +++     + +  IR
Sbjct: 264 LRRLEQDLFQSQKMEAVGRLAGGIAHDFNNILAVILSFSDLVIDKIEDGDPNRKFITEIR 323

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTG 106
            ++  A    + +        ++             +  I + +                
Sbjct: 324 KAAERAADLTQQLLSFSRRNKNLKPEVLDAIKVTRDMQKILRRLVPENIQYNLRFSDTPI 383

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---------------NENIFSL 151
                     +IL+N    A  ++P GG++ +S+   +                  + S 
Sbjct: 384 FVNINRTALEQILINFTTNARDAMPDGGQMELSMVSCEVDQAELLLPDYMDAKPYLVLSF 443

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           +  G      E   +I +    +        +    V  +  +    +            
Sbjct: 444 QDTGTGI-DAETQKRIFEPFFTTKEQGKGTGLGLATVYGIVKQVNGHIEVASEKGKGTRF 502

Query: 210 SALLE 214
              L 
Sbjct: 503 RIFLP 507


>gi|163793613|ref|ZP_02187588.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
 gi|159181415|gb|EDP65930.1| Signal transduction histidine kinase [alpha proteobacterium BAL199]
          Length = 649

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 74/242 (30%), Gaps = 28/242 (11%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVM 50
            + +   L   ++     +L  + + H++ +P+ AI    +LL +           +   
Sbjct: 391 QRELQEALRQAEIANRSKSLFLATVSHELRTPLNAIIGFSDLLAQKVFGPLGDERYEGYA 450

Query: 51  QLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQ 101
             I+ S    +  ++         M       G VD  I +     ++      +   +Q
Sbjct: 451 HDIQTSGQHLLSLIEDVLDLSRIEMGQIRLRLGLVDLPIEIQAAVAMVRARRGQEIASIQ 510

Query: 102 VSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +        L+ +     +IL+NL   A    P  G++ ++ Q   +    ++  +G   
Sbjct: 511 IEVAEGFPTLNADARLIRQILINLISNAAKFTPPSGRILVTAQVVDDGISIAVIDDGIGI 570

Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    +              +   +           +  +L  E        ++  L
Sbjct: 571 DPADHAKVLRPFEQADNRLSRRYEGVGLGLPLTKAFVEVHNGQLQLESAIGEGTTITIRL 630

Query: 214 EK 215
            K
Sbjct: 631 PK 632


>gi|149926856|ref|ZP_01915115.1| PAS/PAC sensor signal transduction histidine kinase [Limnobacter
           sp. MED105]
 gi|149824408|gb|EDM83626.1| PAS/PAC sensor signal transduction histidine kinase [Limnobacter
           sp. MED105]
          Length = 777

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAI----HNSLELLD----EVGIEDEV 49
           M++     L  +  L+ L  L S + H+I  P+ AI      S+  L            V
Sbjct: 526 MSRQQQEKLQFTSRLITLGELASSLAHEINQPLAAISNYNMGSVTRLKAGKVSPEDLLPV 585

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSW 104
           ++ + + +  A   ++ +R              +G I          +      R++++ 
Sbjct: 586 LEKVNVQAQRAGDVIRRIREFVKQQEPKRGPCPIGKIIEDAISFSRLEAKHQSARIEMNL 645

Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNL 157
               + +  +     ++L+NL      ++           I V  S    +  ++ +G  
Sbjct: 646 PDALMSVVADPVLIEQVLMNLIKNGLEAMGHLPPEQKLIEIQVGQSAQFALIEVRDHGVG 705

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   ++ +    +  D   +       +   ++ +L  E       V    L 
Sbjct: 706 V-PEEIRQRLFESFFTTKSDGMGMGLNICRTIIEYHQGQLWVEPAQGQGSVFKFTLP 761


>gi|606149|gb|AAA58012.1| protein kinase [Escherichia coli str. K-12 substr. MG1655]
          Length = 776

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 53/214 (24%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS----H 179
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            I       LA      +            +  +
Sbjct: 468 GIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 501


>gi|88808936|ref|ZP_01124445.1| adaptive-response sensory kinase [Synechococcus sp. WH 7805]
 gi|88786878|gb|EAR18036.1| adaptive-response sensory kinase [Synechococcus sp. WH 7805]
          Length = 383

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 66/231 (28%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54
           + +     +  +     L   + H++ +P+ A   +L+      I+          +L  
Sbjct: 132 LRQENETLIDRLQSQERLLRMVAHELRTPLTAATLALQSQQLGQIDLNRFRDVLKRRLDE 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWTGE---K 108
           ++ +S  +                     +    I ++ + ++  D  +      +    
Sbjct: 192 IALLSKDLLEVGSTRWEALFNPQRLDLASVAAEAILELEKLWLGRDVTIHTDIPADLPLV 251

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A      GG +++++   +      S+  +G      E+    
Sbjct: 252 YADQRRMRQVLLNLLENALKYTQDGGTISVAMLHRTSQWVQVSVSDSGPGIPEQEQQRIF 311

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++             +       +   +  R+            +  + 
Sbjct: 312 LDRVRLPQTSGGTSGFGVGLSVCRRIVEVHGGRIWVVSEPGKGACFTFNVP 362


>gi|90426098|ref|YP_534468.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90108112|gb|ABD90149.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 461

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 61/232 (26%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM-------- 50
           +    +++ +  +  + + + H++  P+ AI N L     LL +   +            
Sbjct: 226 QTELLHVARLGTMGEMSAALAHELNQPLAAIANYLKGSRRLLQDSSDKSAERIRNALDKA 285

Query: 51  -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEK 108
            +    +        +F+        +      + D   +           V +S     
Sbjct: 286 AEQALRAGEVIQRLRQFVSRGETEKSNERLDRIVDDALALALVVAKDRAVAVSLSLDPSA 345

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFPE 162
             +  ++ +I   L  +   +L      T         +        ++  NG     PE
Sbjct: 346 QHVLVDKVQIQQLLLNLIRNALEAMEHQTPRELKISSTRCDDGMIEVTVADNGPGI-DPE 404

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++    + +      +       +   +   +  E            + 
Sbjct: 405 LADRLFLPFMTTKSTGMGVGLSLCRTIVTAHGGGIQAEPQPGGGTAFRFTIP 456


>gi|332710709|ref|ZP_08430650.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332350486|gb|EGJ30085.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 480

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 65/238 (27%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51
           +A+     L     +++      S + H++ +P+  +   ++  L         + E ++
Sbjct: 241 LAQTFDEMLVRLNEALENQRQFVSNVSHELRTPLTLVSGYVQSTLRRGANLSPPQREALE 300

Query: 52  LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QV 102
           +    +   +  L+ +                S      + ++ ++   +     +V  +
Sbjct: 301 IASSEADRTVQMLQDLLDLARADSGHIHFNLESFVLDELVEEVAEMARQYTKRVIKVECI 360

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         ++LLNL   A         VT+ +          +   G      +
Sbjct: 361 KPGIWVKGDINRLKQVLLNLIDNAVKYSSVDKPVTVKLTQVDGRGRIEVCDRGIGIPLKQ 420

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D           +     +    V  L       +      +   + +  L 
Sbjct: 421 -QARIFDRFYRVDETRTRSTGGAGLGLSIVKTLVEGMGGSVKVRSQLNKGSIFTVCLP 477


>gi|300088283|ref|YP_003758805.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528016|gb|ADJ26484.1| multi-sensor signal transduction histidine kinase [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 581

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 61/217 (28%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           L   I H++ +PI  I   +E L     D+     + +  I          +  +     
Sbjct: 363 LVGNISHELRTPITGIKAMVETLHDGAIDDKEAAKDFLTRIESEVDRLAQTVSELTELSR 422

Query: 73  --------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLSRERAKILL 120
                       +D  + + D+ + ++      +    +       E +       + ++
Sbjct: 423 IETGKAELRLEPLDLNVLVKDVIEQLQPLAERQQVTVSATLAKDLPEVLADRDRIRQTII 482

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177
           NL   A      GG V +  + + NE I  +   G      +    F +    +   +  
Sbjct: 483 NLVHNAVKFNRVGGNVKLYTKTNNNEVIVDISDTGIGISKDDLPHVFERFYKADRARSKS 542

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           +  ++       +    S  L 
Sbjct: 543 GSGLGLAIAKHTIQAHNGKIWVASEQGNGSTFSFSLP 579


>gi|294497989|ref|YP_003561689.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium QM B1551]
 gi|294347926|gb|ADE68255.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium QM B1551]
          Length = 1012

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 25/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58
           AK      +     +   S++ H++ +P+ +I    ++L+E     + ++ +  IR    
Sbjct: 635 AKEEAEKANQAK--SEFLSKVSHELRTPLNSILGYAQILEEQGEKDLTEKQLNRIRKILK 692

Query: 59  SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +    L                       V     + D  ++++        +  +    
Sbjct: 693 AGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHA 752

Query: 108 KIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             ++          +ILLNL   A    P    +TI  + +++     ++  G      E
Sbjct: 753 YQEVFVEVDELRFQQILLNLLTNAIKYSPAYRDITIYTEITQHHVTILIEDRGFGIPASE 812

Query: 163 KFTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +          D   I    V  L             +           
Sbjct: 813 LN-RIFEPFYRINRLEKDGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFP 866


>gi|296121904|ref|YP_003629682.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296014244|gb|ADG67483.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 895

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 69/244 (28%), Gaps = 35/244 (14%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54
               + +  L  +  + S + HD  + I  I    E L         +  +   + +   
Sbjct: 639 EQELIQNQRLSVMKQMASGLSHDFNNLISVILGYCETLLIRPDTTDQQRSLILPIREAGH 698

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKIDL 111
            +S      + F R        ++    +  +E ++   +  +  + +         +  
Sbjct: 699 HASRMIRQLIAFSRKQPVAFERINLNSIIRSMEMMVRGILRQNFVLDLRLAELLPNIMAD 758

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-------------------NIFSLK 152
             +  +IL+NL + A  ++P GG   I  +   +                       ++ 
Sbjct: 759 PVQIDQILVNLAINARDAMPEGGTFAIKTEWVSSHADHPQSIRTTETVVQANDLVRITVS 818

Query: 153 INGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      +   +I +    +  +   H +    V  + ++    +             
Sbjct: 819 DTGTGI-PKDLIPRIFEPFFTTKGEGQGHGLGLSVVHGIVNQAGGTIRVFSEPGKGTTFE 877

Query: 211 ALLE 214
             L 
Sbjct: 878 IDLP 881


>gi|256826676|ref|YP_003150635.1| signal transduction histidine kinase [Cryptobacterium curtum DSM
           15641]
 gi|256582819|gb|ACU93953.1| signal transduction histidine kinase [Cryptobacterium curtum DSM
           15641]
          Length = 319

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 65/233 (27%), Gaps = 26/233 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----S 56
           +A+     L            + H++ +P+ AIH + ELL +  +  E+ +         
Sbjct: 90  LARQEKQQLQ-------FVGDVAHELRTPLTAIHGNAELLADPDLPPEMREKFGHTVVTE 142

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTG 106
           S      +  +                 VD      +    +   +       V +    
Sbjct: 143 SERLTRLVNDLLSLQHIEGDSYVLNFTRVDLRPVAQEAVDALAPVLQERGAHCVVIGEAP 202

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEK 163
           + +       +++ NL   A   +  GG + + +      +I ++K +G           
Sbjct: 203 DVLGNRDRLKQVVSNLVDNASRFIEPGGHIRVELYGVGGNSIIAVKDDGTGFGDVDPKML 262

Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   +   +    + +        + 
Sbjct: 263 FERFFRTDFSRARNTGGSGLGLSIVKSVVEAHDGTVEAYNLPEGGACFIVAIP 315


>gi|218709788|ref|YP_002417409.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32]
 gi|218322807|emb|CAV18984.1| hypothetical protein VS_1800 [Vibrio splendidus LGP32]
          Length = 565

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 53/218 (24%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------ 65
             + I H++ +P+  +  S EL+ +  + +   +++   S S                  
Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSNSQREIVNNLSQSGEFLRTIINDLLDYSKIN 267

Query: 66  --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLN 121
              + L        D    +  I         +   V V+               ++ +N
Sbjct: 268 AGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVN 327

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           L   A     +G         +       ++ +G         T                
Sbjct: 328 LIGNAIKFTDQGHVSVEIKWLNDQFIFS-VEDSGVGIAQSAIKTLFEPFTQADNSSSRNY 386

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +       LA   +  +    I       +  L 
Sbjct: 387 EGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLP 424


>gi|149176869|ref|ZP_01855479.1| hypothetical protein PM8797T_14002 [Planctomyces maris DSM 8797]
 gi|148844306|gb|EDL58659.1| hypothetical protein PM8797T_14002 [Planctomyces maris DSM 8797]
          Length = 491

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 18/242 (7%), Positives = 58/242 (23%), Gaps = 29/242 (11%)

Query: 1   MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-------- 51
           +        +  +  V  L + + H++ +P+  +     L+    + +  ++        
Sbjct: 243 LQTQQQLRHIDRLGTVGTLAAGVAHELGTPLNVVSGRAGLISSGQLSEADVRSSAQTIQK 302

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTG 106
                +      L F R       S+D +       ++++          +     +   
Sbjct: 303 ETERMTAIIRQLLDFARRTGTEQASIDLIRLAQQTCELMQPLAMKAHVELIVSANENLPV 362

Query: 107 EKIDLSRERAKILLNLFMVAHA------------SLPRGGKVTISVQDSKNENIFSLKIN 154
             +    +  +++ NL   A                       +   +        +   
Sbjct: 363 NTVGDPGQLQQVITNLISNAIQAIPDGGKIRITVHSEDIQPPAMIESELNRFACLEVIDT 422

Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E    + +    +    +   +       +  E+   +      D        
Sbjct: 423 GTGMTNIE-TEHVFEPFYTTKDVGEGTGLGLSIAYGIVREHGGWIDVASEKDQGTTFRVW 481

Query: 213 LE 214
           L 
Sbjct: 482 LP 483


>gi|146312440|ref|YP_001177514.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Enterobacter sp. 638]
 gi|145319316|gb|ABP61463.1| integral membrane sensor hybrid histidine kinase [Enterobacter sp.
           638]
          Length = 949

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 452 MEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + +                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPSEFSPREVMNHISANYMPLVVRKQLGLYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +       +       +++ NL   A       G + + V  + +     ++  G     
Sbjct: 572 EPDVPLTLLGDPMRLQQVISNLLSNAIKFTDV-GCIILHVSRAGDYLSIRIRDTGVGIPA 630

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L       +  +         +  + 
Sbjct: 631 KEVVKLFDPFFQVGTGVQRNFQGTGLGLAICEQLISMMDGDISVDTEPGMGSQFTIRIP 689


>gi|297529553|ref|YP_003670828.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
 gi|297252805|gb|ADI26251.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           C56-T3]
          Length = 597

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 59/236 (25%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 359 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 414

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVS 103
                       L   R+  G+                 +     + ++           
Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E         ++L NL   A      GG V + ++ S +     ++ +G+     + 
Sbjct: 475 RDIEIAFDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +   +K  +      +     S  L 
Sbjct: 535 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLP 590


>gi|239931755|ref|ZP_04688708.1| two component sensor kinase [Streptomyces ghanaensis ATCC 14672]
          Length = 491

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 64/203 (31%), Gaps = 13/203 (6%)

Query: 24  HDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGYTG 75
           H++ +PI  +   LEL+ +E    +E ++L+          ++ +       R  F    
Sbjct: 286 HELRTPITIVRGHLELMGEEPAEREETVRLVTDELDRMSRIVEDLLLLARAERPDFVTPE 345

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            V       D+        A D ++  +   E +   +   + ++ L   A      G  
Sbjct: 346 PVQLAELTADVFVKARTLGARDWQLAGTADREVVLDPQRITQAMVQLAQNAVQHTTTGQT 405

Query: 136 VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD--IQFYYVILLA 190
           + I  +   +     +  +G+  R  +    F +   G            +    V  +A
Sbjct: 406 IRIGSRAEGSRIELYVADSGSGVRPQDRELIFERFRRGTSRRGAHGSGAGLGLSIVKAIA 465

Query: 191 HENKIRLLPEIIDDHNVVLSALL 213
             +  R+  +  +         L
Sbjct: 466 EGHGGRVRLDDTEGGGATFVLTL 488


>gi|227819691|ref|YP_002823662.1| sensor-regulator protein [Sinorhizobium fredii NGR234]
 gi|227338690|gb|ACP22909.1| putative sensor-regulator protein [Sinorhizobium fredii NGR234]
          Length = 989

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 68/240 (28%), Gaps = 31/240 (12%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            + +     + +  ++      + + H+I +P+  +    ELL+   + ++  + + +  
Sbjct: 329 REELERARDAAEQASIAKSEFLANMSHEIRTPMNGVIGIAELLEGTELSEQQRRYVSIIL 388

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVDKRVQ 101
            SA   +  +     ++      + L  I  V+ D +                 +   + 
Sbjct: 389 HSADTLMDLINDILDFSKIEAGRLELETIPFVLRDTLGDTLQTLAKRAADKGLELACHIP 448

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNL 157
                  +       +I++NL   A      G  V         D      F ++  G  
Sbjct: 449 PEVPDHLMGDPTRLRQIIVNLVGNAIKFTENGEVVVDVTLVGQGDHGAHLQFEVRDTGIG 508

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +   +I +                 +       LA +   R+  +       V + 
Sbjct: 509 IPEAQ-QERIFEAFAQADASTTRQYGGTGLGLAIAAQLAEKMGGRMQLDSKPGVGSVFTF 567


>gi|153003674|ref|YP_001377999.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152027247|gb|ABS25015.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 663

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 56/215 (26%), Gaps = 19/215 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLA-- 70
           + + HD+ +P+ +I  +   L+          +       IR +       ++ +     
Sbjct: 446 AEVSHDLRNPLSSIILAAAQLERSAGRSELPDLVGRRAASIRRAGDRMNHLVQDLLDLAR 505

Query: 71  --------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                        S   L+                +                  ++L NL
Sbjct: 506 AENGRLELDVGEHSARELVDDAVESIAPVVRERELRVRAAVEPLLVRCDRERVHRVLANL 565

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--SHD 180
              A    PR G V ++ +  +   +F++   G      E+                   
Sbjct: 566 LSNAVKVSPRKGTVELTARQRERAVLFTVADEGPGISLDEQRHMFEHYWRGRESGAQGVG 625

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I    V  L   +  ++  + +       S  L +
Sbjct: 626 IGLSIVKTLVERHGGKVWVDSVPGAGARFSFTLPR 660


>gi|194467365|ref|ZP_03073352.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri 100-23]
 gi|194454401|gb|EDX43298.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri 100-23]
          Length = 443

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 57/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIR 54
                +          +   H++ +P+  I   + L+   G +   +         Q  +
Sbjct: 221 RQYRTMQREK---EFIANASHELKTPLAGILGHVNLIRRHGDKHPELIGKSLKYIDQEAQ 277

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             S      L            ++    +    + ++          ++          +
Sbjct: 278 RMSQLINELLILEGHQTKKLTEINLSKIIFAEVESLQGAYQQKFITDLNPNISYQITKGD 337

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171
              ++ NL   A    P    + + +       I  +   G         + F +    +
Sbjct: 338 FQSLVHNLLENAAKYSPTDSTIDVLLTTDDRHIILRVADQGRGIAKENREKVFERFYRED 397

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 I    I    V ++  +   ++     +    + +  L K
Sbjct: 398 ESHSNKIAGSGIGLAIVKMIIEKYHGKITIRDNEPSGTIFTVYLPK 443


>gi|56695022|ref|YP_165368.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
 gi|56676759|gb|AAV93425.1| sensory box sensor histidine kinase/response regulator [Ruegeria
           pomeroyi DSS-3]
          Length = 743

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 59/247 (23%), Gaps = 39/247 (15%)

Query: 6   CFNLSSMDLVA-------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
                + +L A                + + H+I +P+  +    ELL E  +  E  Q 
Sbjct: 343 AAKAQAEELAAARVAAEEGARAKAEFLATMSHEIRTPMNGVVGMAELLSETKLSIEQRQY 402

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------ 100
           +     S+   L  +      +      + L  +       +    R+            
Sbjct: 403 VDTIRSSSTALLAIINDILELSRLDARKMELHPVNFDPVSCVRDTMRLLKPQAQAKGLRL 462

Query: 101 ----QVSWTGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKI 153
                               ++L+NL   A     R     ++    QD        ++ 
Sbjct: 463 SLETGADVPPLVYGDDGRLRQVLINLLGNAIKFTERGGVTLRLRSEAQDPGYLLTLEVED 522

Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G      EK  ++ +                 +       L      R+  +       
Sbjct: 523 TGIGI-AAEKIERVFERFSQADADTTRLYGGTGLGLTISRELVALMGGRITVDSTLGQGS 581

Query: 208 VLSALLE 214
             +  L 
Sbjct: 582 CFTLCLP 588


>gi|30022095|ref|NP_833726.1| sporulation kinase B [Bacillus cereus ATCC 14579]
 gi|228960272|ref|ZP_04121926.1| hypothetical protein bthur0005_37410 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229047695|ref|ZP_04193278.1| hypothetical protein bcere0027_36750 [Bacillus cereus AH676]
 gi|229129286|ref|ZP_04258258.1| hypothetical protein bcere0015_37300 [Bacillus cereus BDRD-Cer4]
 gi|229146581|ref|ZP_04274949.1| hypothetical protein bcere0012_37220 [Bacillus cereus BDRD-ST24]
 gi|296504502|ref|YP_003666202.1| sporulation kinase B [Bacillus thuringiensis BMB171]
 gi|29897652|gb|AAP10927.1| Sporulation kinase B [Bacillus cereus ATCC 14579]
 gi|228636873|gb|EEK93335.1| hypothetical protein bcere0012_37220 [Bacillus cereus BDRD-ST24]
 gi|228654212|gb|EEL10078.1| hypothetical protein bcere0015_37300 [Bacillus cereus BDRD-Cer4]
 gi|228723655|gb|EEL75017.1| hypothetical protein bcere0027_36750 [Bacillus cereus AH676]
 gi|228799407|gb|EEM46370.1| hypothetical protein bthur0005_37410 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296325554|gb|ADH08482.1| sporulation kinase B [Bacillus thuringiensis BMB171]
          Length = 424

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TNEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|291523429|emb|CBK81722.1| amino acid-binding domain sensor hybrid histidine kinase
           [Coprococcus catus GD/7]
          Length = 953

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 28/222 (12%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            + HDI +PI  I   L +L++ G + E  +        +   L  +         ++S 
Sbjct: 584 NMSHDIRTPINGIMGMLTILEKSGNDGERAKDCLNKINESSKLLLSLVNDVLDMAKLESD 643

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWT-----------------GEKIDLSRERAKILLNLF 123
             +   E +  D +  +    +S+                        +    K+L+NLF
Sbjct: 644 TVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLF 703

Query: 124 MVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172
             +               TI   +      F ++ NG          ++           
Sbjct: 704 TNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIGMSEEFIKNELFTPFVQADNSP 763

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S  +   +    V  L  +    +  E         + +L 
Sbjct: 764 RSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTVILP 805


>gi|296822116|ref|XP_002850232.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
 gi|238837786|gb|EEQ27448.1| two-component sensor protein histidine protein kinase [Arthroderma
            otae CBS 113480]
          Length = 2349

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 63/238 (26%), Gaps = 29/238 (12%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
            N+     +    ++  + I HD+ +P+  +    ELL     +   +  V  +   +   
Sbjct: 1843 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1902

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106
              +    +  +    G +   I   +                  +    V+    +    
Sbjct: 1903 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPNL 1962

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
              +       +I +NL   ++   P+G     ++ +            +   G      +
Sbjct: 1963 LVMGDPVRLHQIFMNLLSNSYKFTPKGSVTVQAIVEEDTPEQIRVTCKVADTGIGISEEQ 2022

Query: 163  KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
               ++             +     +       +  +    R+  +  +     ++  L
Sbjct: 2023 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2079


>gi|225027309|ref|ZP_03716501.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353]
 gi|224955371|gb|EEG36580.1| hypothetical protein EUBHAL_01565 [Eubacterium hallii DSM 3353]
          Length = 955

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 62/222 (27%), Gaps = 28/222 (12%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            + HDI +PI  I   L +L++ G + E  +        +   L  +         ++S 
Sbjct: 584 NMSHDIRTPINGIMGMLTILEKSGNDGERAKDCLNKINESSKLLLSLVNDVLDMAKLESD 643

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWT-----------------GEKIDLSRERAKILLNLF 123
             +   E +  D +  +    +S+                        +    K+L+NLF
Sbjct: 644 TVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDDYSGIYVWSNAVHLKKVLMNLF 703

Query: 124 MVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172
             +               TI   +      F ++ NG          ++           
Sbjct: 704 TNSMKYNKVNGSIYMSMRTIERSEDHMTCEFKIRDNGIGMSEEFIKNELFTPFVQADNSP 763

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S  +   +    V  L  +    +  E         + +L 
Sbjct: 764 RSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTVILP 805


>gi|163850140|ref|YP_001638183.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163661745|gb|ABY29112.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 648

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + +       + ++     + + H++ +P+ AI    ++L          +   +   + 
Sbjct: 339 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAMSLSPERSREYAGII 398

Query: 57  SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQ 101
           + S    L  +                    VD    +     ++               
Sbjct: 399 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGIALTSAP 458

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           V  +   +  +R   ++L+NL   A    PRGG+V + V+         +  +G      
Sbjct: 459 VPASCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEA 518

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++ D   +       + +   +    V  LA  +   +  E        ++  L 
Sbjct: 519 DLP-RLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 576


>gi|163853028|ref|YP_001641071.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163664633|gb|ABY32000.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 684

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53
           A+++      ++++  L   + HD  + +  I +S +LL    + ++             
Sbjct: 299 AQDVLRQSQKLEVIGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAEDRRTRYIEAISNTV 358

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++      L F R          +   +  + +++         V          ++ 
Sbjct: 359 DRAAKLTGQLLAFARRQTLKPKVFAACDSVRSLSEMLGTLTGSRITVVTELPENACFVNA 418

Query: 114 ERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNL 157
           + ++    L+N+ + A  ++              +   V             S+   G+ 
Sbjct: 419 DPSQFDTALVNMAVNARDAMEGEGQLTIRVEPVEQMPSVRAHPAVQGPFVAVSISDTGSG 478

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +I +    +        +    V   A ++   ++ E         +  L +
Sbjct: 479 I-AKDVVERIFEPFFTTKAVGQGTGLGLSQVFGFAKQSHGEVVVESEVGQGTTFTLYLPR 537


>gi|110636005|ref|YP_676213.1| multi-sensor hybrid histidine kinase [Mesorhizobium sp. BNC1]
 gi|110286989|gb|ABG65048.1| multi-sensor hybrid histidine kinase [Chelativorans sp. BNC1]
          Length = 744

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 55/236 (23%), Gaps = 25/236 (10%)

Query: 4   NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           N         +  +   + + H+I +P+  I     LL +  +  E    +   S SA  
Sbjct: 226 NARERAEQASIAKSRFLATVSHEIRTPMNGIIGMATLLSDTRLSSEQRTYVAAISTSASA 285

Query: 63  R----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                               +         +   +      +     I +   +  +   
Sbjct: 286 LLALIEDLLDYSKIEAGRLELEPQRMAARELIESVIELMAVRAFTKKIGLGCHIAPTVPD 345

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRG---GKVTISVQDSKNENIFSLKINGNLARFPEK 163
             +       +ILLNL   A      G     VT ++ D   +  F +   G        
Sbjct: 346 TILADPGRLRQILLNLLGNAIKFTDEGGVLMTVTTTIHDGAPKLAFRVDDTGPGIEKDSL 405

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +                +       L    +  +  +         +  + 
Sbjct: 406 SRIFQEFEQADTSSTRKHGGAGLGLAITRRLIDAMEGTVTVDSAPGEGATFTVYIP 461


>gi|330900231|gb|EGH31650.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 417

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/255 (10%), Positives = 72/255 (28%), Gaps = 41/255 (16%)

Query: 1   MAKNICFNLS---------SMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIED 47
           + +     +           M++V  L + I HD  + + A+  S  L    L     + 
Sbjct: 154 LRQREEERVQMISDRFQAQKMEIVGQLTAGIAHDFNNMLTAVTGSASLAEHYLKNDKPDH 213

Query: 48  ------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                   ++  + +S      + F R     +  ++    +  + ++    +      +
Sbjct: 214 AKKHLANALRASQTASAMTARLMAFSRRHKLGSEVINVNPLITSLIELGRGSLGSKVLYE 273

Query: 102 VSWTGEKIDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSK-------------- 144
                       +  ++     NL + A  ++P GG ++I   +                
Sbjct: 274 TDLASNLWLTKVDPHQLESAVFNLMVNARDAMPAGGTISIRTSNVDVSEQMAAKGSLLVT 333

Query: 145 --NENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPE 200
             +     +   G          +I +    +  +     +    V    ++    L  E
Sbjct: 334 GQSCVRIQVSDTGTGMPVA-LIERIFEPFFTTKEEGKGTGLGLTMVYGYVNQAGGCLTVE 392

Query: 201 IIDDHNVVLSALLEK 215
             + H    S  + +
Sbjct: 393 SQEGHGTTFSLFMPR 407


>gi|304397529|ref|ZP_07379407.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304355147|gb|EFM19516.1| integral membrane sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 950

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 65/240 (27%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   +  L+   
Sbjct: 453 MEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPSGIDSLVTAM 512

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +        + +                     +
Sbjct: 513 NNSSSLLLKIISDILDFSKIESEQLKIEPRPFAPREIVTHIVGNYLSLVVKKRLTLYCFI 572

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A      G  +  +         F ++  G     
Sbjct: 573 EHDVPQVLDGDPLRLQQVISNLLNNAIKFTHTGCIILHAYVAQG-YLAFRVRDTGVGIPA 631

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +            + 
Sbjct: 632 KELP-RLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQFIVRIP 690


>gi|294495114|ref|YP_003541607.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
 gi|292666113|gb|ADE35962.1| PAS/PAC sensor signal transduction histidine kinase
            [Methanohalophilus mahii DSM 5219]
          Length = 1034

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 68/237 (28%), Gaps = 28/237 (11%)

Query: 3    KNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53
            +     + +       +   + + H++ +P+ ++    ++L      +    + + +  I
Sbjct: 797  RANEMAIQAEYANKTKSQFLANMSHELRTPLNSVIGFSDILLKEIKGELNDSQKKYISNI 856

Query: 54   RLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                   +  +             M LA            +  +        ++D  +  
Sbjct: 857  SNGGRHLLDLINDILDLSKIEAGKMELACEDLNLDSVFSEIESVISPQAQKKSIDLEISK 916

Query: 103  SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFP 161
                E      +  +I+ NL   A       GKV++S  +    +   ++K  G      
Sbjct: 917  PADIEINADKSKIKQIIFNLLSNAIKFTDENGKVSMSAGEVDRDQVEITVKDTGIGI-PE 975

Query: 162  EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +K  +I D  +              +    V      +   +L E       V + L
Sbjct: 976  DKLDKIFDPFMQADSSTSRKYGGTGLGLPLVKEYVEMHGGEILVESEVGKGSVFTLL 1032


>gi|242238486|ref|YP_002986667.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii Ech703]
 gi|242130543|gb|ACS84845.1| histidine kinase [Dickeya dadantii Ech703]
          Length = 934

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 68/240 (28%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 432 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLRTKSLSRDANRLVEAM 491

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
             S+ + LK +     ++      + +        + I                     +
Sbjct: 492 QNSSSLLLKIISDILDFSKIESEQLKIEPGRFAPREVINHIISNYLPLVVKKRLTLYCYI 551

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + S     +  +    ++L NL   A      G  V    +       F ++  G     
Sbjct: 552 EPSVPVSILGDAVRLQQVLSNLLSNAIKFTDTGCIVLQVQRRHDGYLAFQVRDTGVGIEP 611

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++ D   +             +       L       +  E       +    + 
Sbjct: 612 RSVM-KLFDPFYQAGTGVQRHFQGTGLGLAICEKLVSLMDGDISIESEPGLGSLFGVRIP 670


>gi|218260978|ref|ZP_03476005.1| hypothetical protein PRABACTJOHN_01669 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224270|gb|EEC96920.1| hypothetical protein PRABACTJOHN_01669 [Parabacteroides johnsonii
           DSM 18315]
          Length = 582

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 61/230 (26%), Gaps = 19/230 (8%)

Query: 2   AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
             N    +  +  L +   + + H+I +P+ AI    +++ E   EDE  + + +   + 
Sbjct: 353 RDNELIRVKEADKLKSAFLANMSHEIRTPLNAIVGFSDIVAETPDEDEKKEYLEIIHKNN 412

Query: 61  IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L                +      T   +    +     +           +   + 
Sbjct: 413 DLLLHLIDDILDFSKIESGTLDYHITETNIKEICGEVFLASSLKMKPGVKLVFDKELPSI 472

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 +   +++ N    A     +G       Q+       S++  G      ++  +
Sbjct: 473 RLQTDPQRVMQVISNFVNNAIKFTEKGSITISYKQERN-YLRVSVQDTGIGISEDDRK-R 530

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  +          +       +       +  + +          L 
Sbjct: 531 IFERFIKINEFKQGTGLGLTISRTIIESLNGTIGVDSVKGSGSTFWFTLP 580


>gi|254182943|ref|ZP_04889536.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
 gi|184213477|gb|EDU10520.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1655]
          Length = 1014

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 630

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 631 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 751 TVTVALP 757


>gi|254195423|ref|ZP_04901851.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
 gi|169652170|gb|EDS84863.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei S13]
          Length = 1014

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 630

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 631 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 751 TVTVALP 757


>gi|89054475|ref|YP_509926.1| PAS/PAC sensor hybrid histidine kinase [Jannaschia sp. CCS1]
 gi|88864024|gb|ABD54901.1| PAS/PAC sensor hybrid histidine kinase [Jannaschia sp. CCS1]
          Length = 752

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 75/243 (30%), Gaps = 32/243 (13%)

Query: 3   KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
           K +    + S  + A+  L   + HD  + + AI    +LL    D+   +   +  I  
Sbjct: 362 KTLEQQFVQSQKMQAIGELAGGVAHDFNNLLTAITGHCDLLLLRHDQGDQDYADLVQINQ 421

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---- 111
           ++  A   +  +            ++ L D    +   +      ++S +          
Sbjct: 422 NANRAASLVGQLLAFSRKQTLEPEVLDLRDSIGELTHLLNRLVGERISLSLSNDPDLAPI 481

Query: 112 ---SRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKI 153
               R+  ++++NL + A  ++                       ++  + +     ++ 
Sbjct: 482 RADRRQLDQVIMNLVVNARDAMADGGEVRVETRMVHLAEPMSRDQAIVPAGSYVTIRVRD 541

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           +G+    P+K  +I +    +    +   +       +  +    +  + +       + 
Sbjct: 542 HGHGI-PPDKLHRIFEPFFTTKRTGEGTGLGLSMAYGIVKQTGGYIFVDSVVGSGTTFTI 600

Query: 212 LLE 214
            + 
Sbjct: 601 YIP 603


>gi|150016956|ref|YP_001309210.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149903421|gb|ABR34254.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 644

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 29/243 (11%)

Query: 1   MAKNICF---NLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQL 52
           +A+N       +    L     + + H++ +P+  I ++ +L       +  +  E M+ 
Sbjct: 368 LAENKRLLEETVQYEKLKTEFIANMSHELRTPLNIIFSTAQLFNVLINRDENLNTEKMKN 427

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKR 99
              S      RL  +         +D               +     +   E    + + 
Sbjct: 428 YTNSIKQNCYRLVRLVNNLIDITKIDSGYMKLELKNGNIVQVVEDITQSTAEYVEYMSRT 487

Query: 100 VQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           +      E+  ++ +  K+   L      A      G K+++ + D  +  + S+K  G 
Sbjct: 488 IIFDTDNEEKIMAFDEEKLERILLNLISNATKFTEPGDKISVDLYDMDDHIVISVKDTGR 547

Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +                 + +   I    V  L   ++  +  + I         
Sbjct: 548 GIPEEKVSQLFQRFKQVERLLNRSHEGSGIGLSIVKALVEMHEGTIEVKSIYGEGTEFII 607

Query: 212 LLE 214
            L 
Sbjct: 608 CLP 610


>gi|332306726|ref|YP_004434577.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174055|gb|AEE23309.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1115

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 56/239 (23%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++       +  A       + + H+I +P+ A+    ++L +   E E  + +   
Sbjct: 520 MEQSLLIAKDKAEQAASSRAAFLANMSHEIRTPMNAVIGFSDILLDDVFEAEQRKHLTTI 579

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------------IEQVIEDFIAVDKRV 100
           + SA   L  +                                    Q  +  + ++  V
Sbjct: 580 NQSAKSLLHLLNDILDSAKLDKGKFEFEMRDFSLIEEIDAVVSTLWLQANKKELYLNVSV 639

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                G          ++L NL   A      GG              F++   G     
Sbjct: 640 APEVAGAFHGAPDRIRQVLTNLIGNAIKFTVLGGVNIKVGVKPSGCIEFAIIDTGIGMTK 699

Query: 161 PEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +              +        +       L      ++            S  L 
Sbjct: 700 EQLNLVFDAFGQADASMSRRFGGTGLGTTISKQLIELMGGKISATSTYGEGSCFSFTLP 758


>gi|326478067|gb|EGE02077.1| serine/threonine protein kinase [Trichophyton equinum CBS 127.97]
          Length = 2408

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 29/238 (12%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
            N+     +    ++  + I HD+ +P+  +    ELL     +   +  V  +   +   
Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1934

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106
              +    +  +    G +   I   +                  +    V+    +    
Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPDL 1994

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
              +       +I +NL   ++   P G     ++ +            +   G      +
Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2054

Query: 163  KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
               ++             +     +       +  +    R+  +  +     ++  L
Sbjct: 2055 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|294644343|ref|ZP_06722109.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294810705|ref|ZP_06769353.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292640313|gb|EFF58565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442038|gb|EFG10857.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 744

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44
           K+    L +  L+A          + + H+I +P+ +I     +L               
Sbjct: 503 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 562

Query: 45  -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                  + +++LI      + I   +M  +F      + +  +    QV+        +
Sbjct: 563 STINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIAPHLEFLK 622

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
                  E         ++L N    A         K+  S    +      ++ +G   
Sbjct: 623 EVDDTPLEINVDRERLIQVLTNFLNNACKFTETGYIKLGYSYLPDEGNVQIYVEDSGRGI 682

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+         ++       +      ++  +   ++  +         + +L 
Sbjct: 683 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGKIELKSEVGKGSRFTVILP 739


>gi|237715167|ref|ZP_04545648.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408882|ref|ZP_06085427.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229445000|gb|EEO50791.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353093|gb|EEZ02188.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 754

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44
           K+    L +  L+A          + + H+I +P+ +I     +L               
Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 572

Query: 45  -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                  + +++LI      + I   +M  +F      + +  +    QV+        +
Sbjct: 573 STINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIAPHLEFLK 632

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
                  E         ++L N    A         K+  S    +      ++ +G   
Sbjct: 633 EVDDTPLEINVDRERLIQVLTNFLNNACKFTETGYIKLGYSYLPDEGNVQIYVEDSGRGI 692

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+         ++       +      ++  +   ++  +         + +L 
Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGKIELKSEVGKGSRFTVILP 749


>gi|256827994|ref|YP_003156722.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256577170|gb|ACU88306.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 758

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 55/241 (22%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         + +  +L  + + H+I +P+  I    EL         V + + L   S 
Sbjct: 373 LQSARRKADEANEAKSLFLAHMSHEIRTPLTGIMGLAELAIGNPGNPGVQEYLTLIRQSG 432

Query: 61  IIRLKF----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              L                  ++       S+           + E  + +   +    
Sbjct: 433 QNLLHIINDILDFSKVEAGKIELQKNRFNARSMLEATIAFFKPGIREKGVTLSLVLAEEL 492

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLA 158
               +       +I  NL   A     +G         T     ++    F +  +G   
Sbjct: 493 PQAVVGDENRIRQIFFNLVGNAVKFTEKGKIELRLTGLTSEENSARMMLHFEIMDSGCGI 552

Query: 159 R---FPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                   F +          T     +    V  L       +     +         +
Sbjct: 553 PADKQDSIFERFTQAARFPTRTYQGTGLGLAIVKQLIEAMGGSIGVRSTEGVGTTFFFNI 612

Query: 214 E 214
            
Sbjct: 613 P 613


>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
 gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
           5692]
          Length = 1316

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 64/243 (26%), Gaps = 33/243 (13%)

Query: 3   KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           +     L      A +         + + H+I +P+ AI   L L+ +  +  +    + 
Sbjct: 687 EKANTALEEAKDAAEVANRTKSAFLANMSHEIRTPMNAILGMLHLIKQTHLSAKQANYMD 746

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDK 98
               S    L  +     ++      + L   E  IE  +                 ++ 
Sbjct: 747 KVHTSTEALLNIINDILDFSKIESGKLQLEQTEFDIETEMRTVAELLGLEAQQKGIVLNF 806

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKIN 154
            + ++     +  +    ++L+NL   A      G            +++ E IF ++  
Sbjct: 807 DLDLNAPERFVGDAMRLRQVLINLVGNAIKFTEHGHIQVTQRLTQWVEAQAECIFEVEDT 866

Query: 155 GNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      ++       +              +       L       +  +         
Sbjct: 867 GPGIAPGQQELLFQAFSQADASTTREFGGTGLGLAISKRLVEMMGGEIGLQSTPGQGSRF 926

Query: 210 SAL 212
           +  
Sbjct: 927 TFR 929


>gi|212639804|ref|YP_002316324.1| signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
 gi|212561284|gb|ACJ34339.1| Signal transduction histidine kinase [Anoxybacillus flavithermus
           WK1]
          Length = 469

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 25/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           MA  +              + + H++ +P+  +    E L      E   + + ++LI  
Sbjct: 234 MAHALAKEDERKK---EFLANVSHELRTPLSYVKGYSEALLDGVIKEEAQQKKYVRLIHR 290

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----- 110
            +      ++ +       G+   +     I Q++E+ I   + +        +      
Sbjct: 291 EASRMQRLVRDLLDLAQLEGTYPLVRTPFSIAQLVEETIEKYEPMLQEKNIRLLLDLDHD 350

Query: 111 -----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N+   A    P  G +++   + +      +  +G      +   
Sbjct: 351 LIVDGDPDRIEQVLQNVLDNALRYTPSFGTISLRAVNKQPMCELIIADSGCGMSKEDI-E 409

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +    V  +   +   +  E        +   L 
Sbjct: 410 RLGERFFRADRSRSREHGGTGLGIAIVKQIIKLHGGSIRFESEQGKGTTVYMELP 464


>gi|197302290|ref|ZP_03167349.1| hypothetical protein RUMLAC_01017 [Ruminococcus lactaris ATCC
           29176]
 gi|197298721|gb|EDY33262.1| hypothetical protein RUMLAC_01017 [Ruminococcus lactaris ATCC
           29176]
          Length = 247

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 18/213 (8%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
            S I H+I +P+  I +SL++++    E +     + +          +     Y     
Sbjct: 35  VSLISHEIRNPLTLISSSLQIMELEHPEVKEFFNWKQTMDDVDFMCSLLNELSDYNNGNT 94

Query: 79  SLIGLGDIEQV---------------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
             + +  IEQ+                           +   G       +  +++LNL 
Sbjct: 95  LHLSVFSIEQLLKNIAVSFAISLESEQSVHPIEFTSRIMPDMGSFTGDKIKLEEVILNLL 154

Query: 124 MVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
             A  ++       I        +  +   K NG      +    I +  +        +
Sbjct: 155 RNAKDAVMEQSYRKIRLTADRIDDRIVIRCKDNGCGI-PEDLQKTIFEPFITHKPGGTGL 213

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +K  L  E         +  L 
Sbjct: 214 GLAVSKRIIEAHKGTLSFESKKGPGTTFTVSLP 246


>gi|153812003|ref|ZP_01964671.1| hypothetical protein RUMOBE_02396 [Ruminococcus obeum ATCC 29174]
 gi|149831902|gb|EDM86988.1| hypothetical protein RUMOBE_02396 [Ruminococcus obeum ATCC 29174]
          Length = 385

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 71/247 (28%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIR 54
           M + +  +     +        L S I HD+ +PI A+   +E + +      E M    
Sbjct: 133 MRRRLKESAE-EKIAMDKENKELISNISHDLKTPITAVKGYVEGIMDGVADTPEKMDRYV 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------------- 99
            +  +    +  +     +   +D+        ++  +    D                 
Sbjct: 192 RTIYNKTNEMDHLINELTFYSKIDTNRIPYTFSKLNVEDYFSDCAEEVGLELETRGIQLC 251

Query: 100 --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKI 153
               V      I    +  +++ N+   A   + +   +   +Q       +     ++ 
Sbjct: 252 YANYVDKDVLVIADGEQIRRVIHNIISNAIKYMDKQNGMKGIIQIRVKDVGDFVQVEIED 311

Query: 154 NGNLARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           NG      +    F +    +V          I    V  +  ++  ++     +    +
Sbjct: 312 NGKGIASKDLPYIFDRFYRTDVSRNSSKGGSGIGLSIVRKILEDHGGKVWATSREGIGTI 371

Query: 209 LSALLEK 215
           +  +L K
Sbjct: 372 MYFVLRK 378


>gi|333011090|gb|EGK30504.1| HAMP domain protein [Shigella flexneri K-272]
 gi|333012716|gb|EGK32096.1| HAMP domain protein [Shigella flexneri K-227]
          Length = 679

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 73/232 (31%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q  + ++     
Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNTNSPDAPRIQRAQQAAERGAL 445

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLTIEIEAQSPAWSAWIDVSQL 505

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+        +
Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616


>gi|330448533|ref|ZP_08312181.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492724|dbj|GAA06678.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1305

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +    +L++ +  +   + + H+I +PI  I + LEL++    + E+ Q+    S S 
Sbjct: 660 LMEANAKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPHAQKPELRQIHHNLSQSG 719

Query: 61  IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +  L                + +        D +  L     +  +   V   + +    
Sbjct: 720 LNLLNIVNDVLDFSKIEAGKLNINPSRHVLSDLIHALVQPHSIHANQKEVSFTLWLDPAV 779

Query: 107 EKIDLSRERA--KILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160
                  +    ++L NL   A      G        +   +++    F++   G   + 
Sbjct: 780 AHYLSFDDFRLTQVLNNLLNNAIKFTTMGNIHLAVDVVKETNTEQTLAFTIHDTGIGIKP 839

Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +             +         +       L       +            + ++ 
Sbjct: 840 EDLSQLFQPFVQVEQSSNRRFSGTGLGLSICYQLVQLMDGDIHATSEVGKGTSFTVIVP 898


>gi|319783400|ref|YP_004142876.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169288|gb|ADV12826.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 380

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51
           MA  I   ++   +   V  L + + H+I +P+  I  + +LL+      +  +   +  
Sbjct: 123 MADKIDRQMTHRGAARSVTGLAAMLAHEIKNPLSGIRGAAQLLELSASDEDRALTRLITD 182

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EK 108
                         F          V+  + L  ++ + ++  A   ++   +       
Sbjct: 183 ETDRIVSLVDRMEVFSDERPIDRYPVNIHVVLDHVKAIAKNGFAKRIKILEDYDPSLPPV 242

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLK 152
                +  ++ LNL   A  ++    +                V  +         F ++
Sbjct: 243 FANRDQLIQVFLNLVKNAAEAIGSDPQGEIVLSTAFRPGIRVSVPGTQDRVSLPLEFCVR 302

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG+     +    + D  + +  +   +    V  +  E+   +  E           L
Sbjct: 303 DNGSGV-SEDILPILFDPFITTKPNGSGLGLALVAKIVGEHGGIIECESTP-RGTTFRIL 360

Query: 213 LE 214
           + 
Sbjct: 361 MP 362


>gi|315127469|ref|YP_004069472.1| sensory transduction histidine kinase [Pseudoalteromonas sp.
           SM9913]
 gi|315015983|gb|ADT69321.1| sensory transduction histidine kinase [Pseudoalteromonas sp.
           SM9913]
          Length = 885

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/233 (8%), Positives = 55/233 (23%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +   I     +  L +   + + H+I +P+ AI    E L            +     ++
Sbjct: 395 LETAIAQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHSDKPTNDKHHLGTILRNS 454

Query: 61  IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSW 104
                             + + +       V  +  +  I + +     +   +   +  
Sbjct: 455 KHLLELINNILDLSKIEAEKLAVEQTPLNVVQLIHDVESIIKPLAQEKQLSFTINYALPL 514

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +IL+N+   A     +G     +   +     F ++  G      +  
Sbjct: 515 PHTINSDITRLKQILINIASNAVKFTEQGQVTITAKYQAPKTLTFVIEDTGIGMSSNQIK 574

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            ++                   +       LA      +            + 
Sbjct: 575 -RLFTPFEQADATTTRRFGGTGLGLCISKNLAQLLGGDVSVTSEVGVGSCFTI 626


>gi|269839880|ref|YP_003324573.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269791610|gb|ACZ43750.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 593

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 74/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           + +++     +  +     + + H++ +P+ A+ + +E L+     +  +  + +  + +
Sbjct: 354 LLRDVTELRRAETIRQEFVANVSHELRTPVAALKSLVETLEEGALEDEEVARDFLARMHV 413

Query: 56  SSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS- 103
                   ++ +                    V+ +    +  +   +   VD  V V  
Sbjct: 414 EVDKLAQLIEELLELSRIESGKVELRIHPVNLVEVVRAGAERLRPQAERQGVDLEVTVEQ 473

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
                +       ++++NL   A    P GG++T+ V     E   +++  G        
Sbjct: 474 PEILALADPERIQQVVINLVHNAIKFTPPGGRITVRVYSLDREVAVTVQDTGVGIEPELL 533

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              F +    +   +     +       L   ++ R+  E          +  L 
Sbjct: 534 DRLFERFFKVDRARSAGGTGLGLAIAKHLVLAHRGRIWAESEGMGKGARFTFTLP 588


>gi|210613372|ref|ZP_03289692.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787]
 gi|210151214|gb|EEA82222.1| hypothetical protein CLONEX_01899 [Clostridium nexile DSM 1787]
          Length = 470

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 65/217 (29%), Gaps = 21/217 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + + HD  SP+ +I   LE + +      ++D+  ++I   +       + +     +  
Sbjct: 251 ANVSHDFRSPLTSIKGYLEAMADGTIPVEMQDKYFKIILFETERLTDLTQDLLTLNQFDT 310

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------------LSRERAKILLNLF 123
               L         +    A       +     I               R+  ++L NL 
Sbjct: 311 KNMLLDKTSFDIHEVIKNTAATFEGTCTGKRISIKLLFATKVLNVSADKRKIQQVLYNLL 370

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID--S 178
             A    P   ++ I   +   +   S+K +G         + + +    ++    D   
Sbjct: 371 DNAIKFSPNDSEIIIETTEHNEKVFVSVKDHGIGIPKKSLNKIWERFYKTDLSRGKDKKG 430

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +   +K  +     +      +  L+K
Sbjct: 431 TGLGLSIVKEIIQAHKQNINVVSTEGVGTEFTFSLQK 467


>gi|209547459|ref|YP_002279377.1| multi-sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
 gi|209538703|gb|ACI58637.1| multi-sensor signal transduction histidine kinase [Rhizobium
            leguminosarum bv. trifolii WSM2304]
          Length = 1211

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 63/235 (26%), Gaps = 24/235 (10%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLI 53
            + +       +  + +L  L + I H++  P+ A+  +       L+ E    +   + +
Sbjct: 973  LRQAREGLARASQVASLAELSASIAHEVNQPLAAVVANSHACQRWLMAEPPNMERAQRTV 1032

Query: 54   RLSSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                 K       +T     +    ++             V+V 
Sbjct: 1033 ERIIRDANSAADVVSRIRALFKQSADRRVHTTLFGVVDEARNLMAAEAARRRARIDVEVD 1092

Query: 104  WTGE-KIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLAR 159
                       +  ++L+NL      ++          + V+   N     +   G    
Sbjct: 1093 GNLPLIAIDRVQIQQVLINLIRNGIEAMDTVDGDRVIGMRVRHMGNAIQTEISDRGQGI- 1151

Query: 160  FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   ++ +    +  +   +       +   +  RL  E  D H   L   L 
Sbjct: 1152 --EFPEKMFEPFFTTKENGMGMGLAICRSIVELHGGRLWAEKNDPHGATLIFTLP 1204


>gi|148270553|ref|YP_001245013.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
 gi|147736097|gb|ABQ47437.1| PAS/PAC sensor signal transduction histidine kinase [Thermotoga
           petrophila RKU-1]
          Length = 720

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 69/212 (32%), Gaps = 16/212 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + +R+ H+I +PI  I   +      LD+     + + +I          +K +      
Sbjct: 506 MTARVAHEIRNPITIIGGFIMRMKKHLDDPETLKKYVNIITNELSRLETIVKEILEYSKE 565

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---------RAKILLNLFM 124
              ++      +        +  +K  +++        + +           ++L+NL  
Sbjct: 566 RQVLEFTEFNLNELIREVYVLFEEKIRKMNIDFCFETDNEDLRIDADRTRIKQVLINLVQ 625

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFY 184
            A  +    GK+ I+ +D       S+  +G      E   +I      +      +   
Sbjct: 626 NAIEATGENGKIKITSEDMYTRVRVSVWNSGPPI-PEELKEKIFSPFFTTKTQGTGLGLS 684

Query: 185 YVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215
               +   E+  ++  E  ++  VV    + K
Sbjct: 685 ICRKIIEDEHGGKIWTENREN-GVVFIFEIPK 715


>gi|114797754|ref|YP_761588.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
 gi|114737928|gb|ABI76053.1| non-motile and phage-resistance protein [Hyphomonas neptunium ATCC
           15444]
          Length = 821

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 68/243 (27%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEV------------- 43
           +++         +  AL      + + H++ +P+ A+    E++                
Sbjct: 564 LSRKYSEEKEKAERAALAKSAFLANMSHELRTPLNAVIGFSEIMTNELAGPLGDPSYKEY 623

Query: 44  --GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-SLIGLGDIEQVIEDFIAVDKRV 100
              I      L+ + +    +              +D        +  +          +
Sbjct: 624 AKDILMSGQHLLDMINDILDMAKIEAGKMTISPQPIDPIDPVDAAMRMIRRKAEEKAIDL 683

Query: 101 QVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            +       D+  +     +++LNL   A     R G +T+ V+    +  F +   G  
Sbjct: 684 VLEAEDNLPDIDADHRAIRQMMLNLLSNAIKFTDRSGTITVRVEQRGTDIYFGVTDTGIG 743

Query: 158 ARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +   ++     +         +   +        A  +  R+L   I      ++ 
Sbjct: 744 IPAEDLP-RLAQPFEQVAKTKDRNHEGTGLGLSLTKSFAEMHGGRMLLSSIYGEGTTVAF 802

Query: 212 LLE 214
           +L 
Sbjct: 803 VLP 805


>gi|114570424|ref|YP_757104.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114340886|gb|ABI66166.1| periplasmic sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 575

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 72/238 (30%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  + +   + + H+I +P+  +     +LD+  +  +    ++  + S 
Sbjct: 190 LQRKSEQAEEATRVKSEFLATVSHEIRTPLNGVLGMARVLDDGSLRPDQSDQVQAITRSG 249

Query: 61  IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQV 102
            + L  +                 T   D    +  + Q+             ++    +
Sbjct: 250 EVLLSTLNDVLDLSRIEEGLMVVETRPFDLPAMINGVAQLYVITAAEKSVEFFIEISPDL 309

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP 161
             T +++       +IL NL   A          + +S  ++ ++  F+++  G      
Sbjct: 310 DLTQKRVGDENRITQILHNLLSNAIKFTAEGRVDLVVSPGETPSDIRFTVRDTGIGMSEA 369

Query: 162 EK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    F +    +           +       LA     R+  +         +A L+
Sbjct: 370 EVRRVFERFTQADQSTSRKYGGSGLGLCIASQLATLMGGRIDVQSEPGVGSCFTASLK 427


>gi|227543946|ref|ZP_03973995.1| sensor histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300909696|ref|ZP_07127157.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
 gi|77745271|gb|ABB02536.1| signal transduction histidine kinase [Lactobacillus reuteri]
 gi|227186062|gb|EEI66133.1| sensor histidine kinase [Lactobacillus reuteri CF48-3A]
 gi|300893561|gb|EFK86920.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
          Length = 491

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50
           M   +   +   +D  +   S + H++ +P+  I   LE+L   G +D  +         
Sbjct: 246 MFNEMLDRMQRYIDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPKVLDDSIKATL 305

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105
              + ++      +   +  ++   +      +  +          +  D   ++     
Sbjct: 306 IETRRMKNLVQEMLDLSRAEQVEINFRNQHTIVNDVVHQVYNNFKMLYPDFTFRLDDDLK 365

Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                        ++L+ L   A        K    +           ++  G     PE
Sbjct: 366 EPIMVDIYRDHLEQVLVILCDNAVKYSTDDHKEIHIILSRGMNTVEIGIQDFGEGI-SPE 424

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ D               + +       L       +  E       +   +L 
Sbjct: 425 NVKRVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSVGAGSLFRIILP 482


>gi|146276766|ref|YP_001166925.1| integral membrane sensor signal transduction histidine kinase
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145555007|gb|ABP69620.1| integral membrane sensor signal transduction histidine kinase
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 604

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 61/224 (27%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELL---DEVGIEDEVMQLIRLSSMSAI 61
            S  L AL  + + + H++  P+ A+   L   +LL             Q I        
Sbjct: 374 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQRRRTEEALASFQRIDDLIERMG 433

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKIDLSR 113
              + ++      G     + +          +    +++V              +    
Sbjct: 434 AITRQLKSYARKGGEAFEPVDVRICVSSALTMMEPQLKIRVVRITRTLPRQPVMVMADRL 493

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +        I +   +      +++ NG      E    + +   
Sbjct: 494 RLEQVIINLLRNALDATKGVASPQIDIVLAAGETATLTVRDNGQGI---EDLDNLFEPFY 550

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +       +  +   RL     +    V    L 
Sbjct: 551 TTKKPGEGVGLGLAISSGIVTDLGGRLTARNAEGGGAVFEVQLP 594


>gi|296332738|ref|ZP_06875198.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305673083|ref|YP_003864755.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296150018|gb|EFG90907.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305411327|gb|ADM36446.1| two-component sensor histidine kinase (YclJ) [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 472

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 64/239 (26%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSS----MDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           MAK +  +               + + H++ +P+  I+  +E L+        +D+   L
Sbjct: 229 MAKKLKQSRDEIDRLEKRRRQFIADVSHELKTPLTTINGLVEGLNSHTIPEDKKDKCFSL 288

Query: 53  IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I   +   +  +K                      ++    + +  +           +Q
Sbjct: 289 ISEETKRMLRLVKENLDYEKIRSQQITLNKLDVPLIEVFEIVKEHLEQQAKEKQNKLTIQ 348

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           V              +IL+N+   +      G      ++  K      ++  G      
Sbjct: 349 VEDHIIVHADYDRFIQILVNITKNSIQFTRNGNIWLRGLEGYKETI-IEIEDTGIGISKE 407

Query: 162 EK---FTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +    ++         + +    V  L   ++  +  +            L 
Sbjct: 408 DIEHIWERFYKADISRTNTAYGEYGLGLSIVKQLVEMHQGTVEIKSEKGKGTTFIIRLP 466


>gi|253575400|ref|ZP_04852738.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251845397|gb|EES73407.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 459

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 68/237 (28%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           +A+     L S++          S   H++ +P+ AI  +L++L +        + E++ 
Sbjct: 220 LAETFNEMLDSLEKAFVSQRRFISYASHELRAPLTAIRGNLDILQKNVNIPSEEKAEILS 279

Query: 52  LIRLSSMSAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-VS 103
            +   +      +  +              G VD    L ++E  I+      +      
Sbjct: 280 DVSKEAKRMSKLVGDLLSLARADAGHEIQKGIVDISNILNELESRIQSSNHKMEITFEYQ 339

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +           +++L L   A    P  GK+T+S     +     +   G      + 
Sbjct: 340 LSVMAWGNEDLLKQLILILLENAIRYTPDSGKITLSTFQDSDYCGVQVADTGIGIEPDDM 399

Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                           T +   +       +   +   +    +     +    L K
Sbjct: 400 PHIFDRFYRSKSARMHTSEGTGLGLALAKSIVDLHDGSIGVTSVPGQGSLFKVSLPK 456


>gi|228956808|ref|ZP_04118593.1| hypothetical protein bthur0005_3470 [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228802849|gb|EEM49682.1| hypothetical protein bthur0005_3470 [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 369

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCYLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 367


>gi|224368411|ref|YP_002602574.1| sensory histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223691127|gb|ACN14410.1| sensory histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 874

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 69/242 (28%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M +        M+ + +L   I HD  + + AI    +L            G  +EV++ 
Sbjct: 493 MLQAQLIQSQKMEAIGILAGGIAHDFNNILSAIMGYTQLAAVLIPKDNKAQGKLEEVLKA 552

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEKID 110
              ++   +  L F R       +V     + ++ +++   +     +   ++   +   
Sbjct: 553 SSRAANLIMQILSFSRQTEQKKSTVFLRPIVKEVLKLLRATLPPTIEIKENLTGKQKVNA 612

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT----------------ISVQDSKNENIFSLKIN 154
              +  +I+LNL   A  +L +   +                             S+   
Sbjct: 613 DPGQIYQIILNLCTNASQALGQCPGMIEVTLESVDIDPSVGEGYFDLPKGQYVKISVADT 672

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G+     +   +I +    +        +       +  +    +  E   +        
Sbjct: 673 GSGI-PEDIKKRIFEPYFTTKAKNTGTGLGLATTHGIIKKYGGDIRFESQVNKGTTFHVY 731

Query: 213 LE 214
           L 
Sbjct: 732 LP 733


>gi|218442076|ref|YP_002380405.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218174804|gb|ACK73537.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 482

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 61/237 (25%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            KN+      + LV        +   H++ +P+ AI ++ ++      + +    +    
Sbjct: 240 EKNLQATNQQLSLVCEQLQRFTANASHELRAPLAAILSNAQMGLLTPNQAQSRHRLEKVV 299

Query: 58  MSAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                                         +  +  ++ + +++        ++ T    
Sbjct: 300 ELTKSMSVLVNDLLFLARYEGVNLRQEFKVVDLVNLLQPLTQEWQNRAYSYNLTLTSYWP 359

Query: 110 DLSRERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             S           + ++NL   A    P GG +   V     + I  ++ NG      +
Sbjct: 360 QSSIMVMAESNLLRQAIVNLLSNACRYTPAGGSIYFKVFCQNLKAIVEVEDNGIGIPTQD 419

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +     +       +   +   +      +   +   +L 
Sbjct: 420 LPHIFERFYRVDTMRSRSTGGFGLGLAITKQIIEAHGGHIDVSSTLEKGTIFQIILP 476


>gi|167848113|ref|ZP_02473621.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei B7210]
          Length = 988

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 485 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 544

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 545 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 604

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 605 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 664

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 665 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 724

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 725 TVTVALP 731


>gi|254299737|ref|ZP_04967186.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
 gi|157809305|gb|EDO86475.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 406e]
          Length = 1035

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 532 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 591

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 592 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 651

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 652 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 711

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 712 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 771

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 772 TVTVALP 778


>gi|188579430|ref|YP_001922875.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
 gi|179342928|gb|ACB78340.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium populi BJ001]
          Length = 1048

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
            +     L+ +D       S + H+  +P+  +   LE  L + GI     + + ++  +
Sbjct: 326 ERRRAEALAELDRAKTRFFSNVSHEFRTPLTLMLGPLEEALRDPGIAPGSRKELEVAHRN 385

Query: 60  AIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104
           A+  L+ +     ++              D      D+       +       +   +  
Sbjct: 386 ALRLLRLVNTLLDFSRVEAGRVEATFAPADLAALTADLASTFRSAVERGGLALRVDCLPL 445

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
                       K++LNL   A       G + + +     +   ++   G        P
Sbjct: 446 PETVFVDRDMWEKVVLNLLSNAFKFT-FHGSIDVRLGPGPADVCLTVADTGVGIPAEALP 504

Query: 162 EKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +     G    +     I    V  L   +   +            +  L 
Sbjct: 505 HVFDRFHRIEGTRSRSHKGSGIGLALVRDLVSLHGGDVEVRSTLGQGTTFTVTLP 559



 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           A+     + +  + A+  L   + HD  + + A+  SLEL +    ++  ++L+  +  +
Sbjct: 740 AEAQEQAVQTRKMDAIEQLTGGVAHDFNNLLAAVMGSLELAERKVTDERALRLLHNAMQA 799

Query: 60  AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           A          L F          VD    L  + + +   +     V      +     
Sbjct: 800 AQRGARLTEQLLAFSLKQRLEAHPVDLNGVLSAMAEQLHRTLGGGTAVVTRLAADLWPAV 859

Query: 113 RERAKILLNLFM---VAHASLP------------RGGKVTISVQDSKNENIFSLKINGNL 157
            +  +I L +      A  +L               G        + +  + ++   G+ 
Sbjct: 860 ADPHRIELAVLNLVTNARDALQGAGEIRIETENLPAGAPRPGTVPAGDLVVLTVADTGDG 919

Query: 158 ARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              P+   +  +    +        +    V   A +    +            S  L +
Sbjct: 920 M-SPDVLARAFEPFFTTKPQGKGTGLGLAQVYGTARQLGGAITLRSRHGEGTTASIYLLR 978


>gi|153808539|ref|ZP_01961207.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
 gi|149128861|gb|EDM20078.1| hypothetical protein BACCAC_02834 [Bacteroides caccae ATCC 43185]
          Length = 622

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 59/234 (25%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + +     + + +       L +   + + H+I +P+ AI     +L E    +E +Q +
Sbjct: 386 LKETERMLIQAKEKAEESDRLKSAFLANMSHEIRTPLNAIVGFSSMLQEADNPEEKLQYV 445

Query: 54  RLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            +   +    L+                   F    +      L    Q+        + 
Sbjct: 446 TIIEENNKRLLQLISDILDLSKIEAGTFDFTFEKVNAKRLCNELYQAMQMRTSPQVELRL 505

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                  +         ++L N  + A      G            E  FS++  G    
Sbjct: 506 SPDLPDLQLTSDKSRLYQVLSNFVVNALKFTSEGSITISYQIK-GKEAKFSVEDTGIGIE 564

Query: 160 FPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             ++           + I    +       +  +   ++  +            
Sbjct: 565 PEKQTAVFNRFVKLNNFIPGTGLGLSICQSIITQLGGKIGVDSEPGKGSCFWFT 618


>gi|147668774|ref|YP_001213592.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
 gi|146269722|gb|ABQ16714.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalococcoides sp. BAV1]
          Length = 433

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            K +   +   M         + HD+ +P+ +I +S  +L  +  + +   L      S 
Sbjct: 192 EKKLRKRIQTEMKSRLEFTRIVVHDLKTPLTSIISSSGVLSNIAADGKYKALASNIYEST 251

Query: 61  IIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +     +                              +   +++      V   V     
Sbjct: 252 MNLNIRLDELLDMAQCEVRDPKLNKSRFNIKEMLEHIISIQQEICNTNHIVFNIVIAPEV 311

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       +IL NL   A       G ++I++   +N  +FS+  +G      E   
Sbjct: 312 TFIIADEDRLKQILDNLIDNAIKYSADSGIISINISHDQNNVLFSISDSGIGIEPGEIKN 371

Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  +    +    V      +  R+  E            + 
Sbjct: 372 IFKPYYRVENRQRKLQGLGLGLSIVRTYVKLHGGRIWVESECGKGTTFLFTIP 424


>gi|92115976|ref|YP_575705.1| periplasmic sensor hybrid histidine kinase [Nitrobacter
           hamburgensis X14]
 gi|91798870|gb|ABE61245.1| periplasmic sensor hybrid histidine kinase [Nitrobacter
           hamburgensis X14]
          Length = 722

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 74/237 (31%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL---SSMS 59
           +N   +   M+ +  L   + HD  + +  I  S++ L     + + ++L+ +   ++  
Sbjct: 337 ENALRHAQRMEAIGQLTGGVAHDFNNLLMIISGSVQRLRRELTDKKSLRLLDMIGTATHR 396

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------ 113
                + +            +I L     V+ + +    R  +    E  D         
Sbjct: 397 GETLTRHLLTYSRRQTLTPEVIDLAQRLPVLRELLTRSLRTDIEINVEVPDTVCAVRVDP 456

Query: 114 -ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARF 160
            E    +LNL + A  ++P GG +++S +               +     +   G     
Sbjct: 457 SEFELAILNLAVNAKDAMPNGGALSMSARPVTLKGDASEEGLSGDFVAVYVADTGQGI-P 515

Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   ++ +    +        +    V   A ++         +     ++  L +
Sbjct: 516 ADVMMRVFEPFFTTKDVSKGTGLGLSQVYGFAKQSGGTATVTSTEGQGTTVTLYLPR 572


>gi|332188134|ref|ZP_08389864.1| sensory box protein [Sphingomonas sp. S17]
 gi|332011848|gb|EGI53923.1| sensory box protein [Sphingomonas sp. S17]
          Length = 511

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +     +    L A+  + S + H++  P+ A+   LE + ++  E +          
Sbjct: 267 LKELQAELVHVSRLSAMGTMASTLAHELNQPLAAVALYLETIRDMLDERDDEPFVSLRSV 326

Query: 51  -----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101
                Q    +         F+          +    + +  Q+      +         
Sbjct: 327 MDDAAQETLRAGHIVRRLRDFVARGEVDKSLHELPQVIAEASQLALVGARERGIRSFFAV 386

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLA 158
                  +    +  ++L+NL   A  ++           +          +++  G   
Sbjct: 387 DPAATPVLVDRVQIQQVLVNLMRNAIEAMAECPVRDLKVATRLRPDGLIEVTVEDTGPGI 446

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E   Q+      +  D   +       +   +  R+  E  D         L
Sbjct: 447 -ADEVREQLFTAFNSTKADGMGLGLSICRTIIEAHGGRIWMERPDRGGTCFHFTL 500


>gi|322385261|ref|ZP_08058907.1| sensor histidine kinase [Streptococcus cristatus ATCC 51100]
 gi|321270684|gb|EFX53598.1| sensor histidine kinase [Streptococcus cristatus ATCC 51100]
          Length = 344

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 77/236 (32%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +       S     ++ +++ HDI +PI +I  ++E + +       +   +  I   
Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +      ++ + +                       LI +    Q++ +    D  +QVS
Sbjct: 166 TERLNKLVEELDVLTLNAQPRIESDGEAEIVFLDQLLIEVMSEFQLLIEQEERDIYIQVS 225

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               KI    ++ ++IL+NL   A      G K+ +  Q +      S+K  G      +
Sbjct: 226 PESAKIKSHYDKLSRILVNLLNNAFKYSDPGTKIEVVAQLTGQILTISVKDEGQGIAPED 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +       LAH+    +  E         +  L
Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEITVESQCGLGSTFTFTL 341


>gi|288958495|ref|YP_003448836.1| two-component sensor histidine kinase [Azospirillum sp. B510]
 gi|288910803|dbj|BAI72292.1| two-component sensor histidine kinase [Azospirillum sp. B510]
          Length = 589

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMS 59
            + +   L + D        + H+  +P+  I ++ +LL     +   E+++ + +   S
Sbjct: 358 ERALERELQARDQQRQFLGMVSHEFRTPLAIIDSAAQLLAMRAGQVEPEMLERLAVIRGS 417

Query: 60  AIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQVSW--TG 106
                  +                    VD    + ++ Q         +          
Sbjct: 418 VQRLTGLIDAHMTDERLQRNALVLELAEVDLPDLIRNVVQPFRVAYPDREFRMTLDGLPR 477

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                +   A +L NL   A      GG + +  +      +  +   G      E    
Sbjct: 478 RAEIDANLIALVLSNLVNNAVKYSGPGGPIHLHGETDGAMAVIEVTDRGRGIPEGELPRL 537

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   G   S +    I  + V  + H +   +  +           L  
Sbjct: 538 FDRFFRGAGASGVPGTGIGLHTVQQIVHLHGGAVAVDSEPGTGSTFRILFP 588


>gi|317052559|ref|YP_004113675.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316947643|gb|ADU67119.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 502

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEV 49
           +   +     S  L ++  + + + H I +P+  I   L++L          +     + 
Sbjct: 264 LESTLNKLAHSSKLASIGRMAAGVAHQINTPLTNISLGLDMLKKQARITMAPDDPQYSKC 323

Query: 50  MQLIRLSSMSAI-------IRLKFMRLAFGYTGSVDSLIGLG-DIEQVIEDFIAVDKRVQ 101
           M  I     +           L F R        ++    +     QV +       R Q
Sbjct: 324 MNRIEAIERNLQKAAMVARELLLFSRQKETDFLPLNLNQVIMGACRQVEQQLKGYTVRYQ 383

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +      + +  +  +I +NL   A  + P GG +T+  +         +   G      
Sbjct: 384 LQKVPPMLGIPWKLEEIYVNLLNNAMDATPPGGTITLVTELDGKTIRSRIIDTGAGI-AS 442

Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    + D    +  +     +  +    +   +   +  E        +     
Sbjct: 443 EHKAMLFDPFFTTKPEGKGTGLGLFICYGIIQMHNGNIAIESSLGKGTTVIMEFP 497


>gi|239904838|ref|YP_002951576.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
 gi|239794701|dbj|BAH73690.1| two-component sensor histidine kinase [Desulfovibrio magneticus
           RS-1]
          Length = 478

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 30/234 (12%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----------------M 50
            +  +    +L + + H+I +P+ A++   E +                          +
Sbjct: 238 QAEKMATIGMLAAGVAHEINNPLTAVYGLAEGIRRRLPAIRQAVDDDLYGDVAEYTETIL 297

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              R         L F R        V     + D   +++  +       +  T     
Sbjct: 298 MECRRCRDIVRSMLSFSRPHTLAFSPVCLNEVVTDTLNILKSRLEDRAAAGLRLTVNLHQ 357

Query: 111 -------LSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +  ++LLN+ + +  ++   G     +  ++ N    S++  G     P+
Sbjct: 358 GLPTVPGDEAQLKQVLLNILVNSMDAIEGEGEITITTHPENDNTVNLSVEDTGRGI-PPD 416

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +        I       +  E+   +            +  L 
Sbjct: 417 NMDKLFNPFFTTKPVGQGLGIGLSTCYSIVREHHGVIEVASEVGIGTHFTVKLP 470


>gi|153824523|ref|ZP_01977190.1| sensor protein TorS [Vibrio cholerae MZO-2]
 gi|149742077|gb|EDM56106.1| sensor protein TorS [Vibrio cholerae MZO-2]
          Length = 984

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 457 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     Y+      + +      +   +                     +    T
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHHTHFDLYRLVRETHELMQSRAREKGITLTYHIDDDVT 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRVRLALDGQGIRFAVEDSGIGIAEEEQA 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 637 TLFDAFTQADAGRRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLP 690


>gi|94967551|ref|YP_589599.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549601|gb|ABF39525.1| periplasmic sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 751

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 66/243 (27%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +  +    L S  + AL  L   + HD  + I  I    EL  +    D  +        
Sbjct: 359 LQTSQEQLLRSARMEALGRLAGGVAHDFNNLITIISGYGELALDKSSGDPQLTSFIQEIR 418

Query: 59  --------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R        +D    L +I +++   +  D ++ +        
Sbjct: 419 KAGERATGLTRQLLAFSRKQVLQAQPLDLNAILSNINKMLRVLVGEDVQLVIVQGAGMPT 478

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDS--------------KNENIFSLKI 153
           +  +  +I   +      A  ++P GG + ++                  +   + ++  
Sbjct: 479 VMADPGQIEQVIMNLTANARDAMPGGGTLGMTTSVQSGDALTVPSGEKAAERYVVLAISD 538

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      +    I +    +        +    V  +  ++   L  +           
Sbjct: 539 TGTGM-TQDTIKHIFEPFFTTKAPGKGTGLGLATVYGIVQQSGGFLEVQSELGKGTTFRV 597

Query: 212 LLE 214
            L 
Sbjct: 598 CLP 600


>gi|94270081|ref|ZP_01291647.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93450946|gb|EAT01937.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 709

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS----- 56
            K+  F  S+ +L       + HD+  P+  I++ + LL+    +    +   +      
Sbjct: 467 EKSAEFQRSNAELE-QFAYVVSHDLRQPLRMINSYMGLLERDLNDKLTDETREMMGFAVG 525

Query: 57  --SMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  + +  +  +                     I  +  D    +  V++S    +
Sbjct: 526 GARRMDQMLVSLLEYSRVGRKGEPMAPLASRQPVDEAIRFLEPDIAEANATVRISGQWPE 585

Query: 109 IDLSRE-RAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165
           I  SR+   ++  NL   A           + +          F++  NG      + F 
Sbjct: 586 IVASRDEFTRLWQNLIGNALKYRDPDRPPDVDIAVTPEDGGWRFTVADNGIGIDPQQ-FD 644

Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
           ++             +   I       +   +  R+  E             L K
Sbjct: 645 RLFKVFQRLHARDKYEGTGIGLAVARKIVERHGGRIWVESEGAGQGCRFIFTLPK 699


>gi|326440160|ref|ZP_08214894.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 408

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 48/223 (21%), Gaps = 24/223 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 178 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADASRVTRLIAELLD 237

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                          VD    +G   Q          R  V        L  +  KI   
Sbjct: 238 ISRIDSGRLEVRRQPVDIAAAVGRHVQAHMASGQGSDRFFVRVRRGLPALWADPDKIDQV 297

Query: 122 LFMVAHASLPRGGKVTISVQDS----------KNENIFSLKINGNLARFPEKFTQIVDGN 171
           L  +   ++  G                    +     ++   G                
Sbjct: 298 LGNLLENAVRHGAGTVTIEVAPVAATGGESGAERGTAVTVSDEGPGIPEESMSRVFTRFW 357

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S      +  Y V  +   +   +               L 
Sbjct: 358 RGSKRGGTGLGLYIVKGIVEAHGGTITVGRGPGGGAEFRFTLP 400


>gi|298481754|ref|ZP_06999944.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D22]
 gi|298271976|gb|EFI13547.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D22]
          Length = 754

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44
           K+    L +  L+A          + + H+I +P+ +I     +L               
Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 572

Query: 45  -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                  + +++LI      + I   +M  +F      + +  +    QV+        +
Sbjct: 573 STINKNSELLLKLINDILELSRIESGYMSFSFKRCKVRELIDDIYMTHQVLIAPHLEFLK 632

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
                  E         ++L N    A         K+  S    + +    ++  G   
Sbjct: 633 EVDDTPLEINVDRERLIQVLTNFLNNAGKFTETGYIKLGYSYLPDEGKVQIYVEDTGRGI 692

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+         ++       +      ++  +   ++  +         + +L 
Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGKIELKSEVGKGSRFTVILP 749


>gi|294811656|ref|ZP_06770299.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
 gi|294324255|gb|EFG05898.1| putative two-component system sensor kinase [Streptomyces
           clavuligerus ATCC 27064]
          Length = 422

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 48/223 (21%), Gaps = 24/223 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 192 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADASRVTRLIAELLD 251

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                          VD    +G   Q          R  V        L  +  KI   
Sbjct: 252 ISRIDSGRLEVRRQPVDIAAAVGRHVQAHMASGQGSDRFFVRVRRGLPALWADPDKIDQV 311

Query: 122 LFMVAHASLPRGGKVTISVQDS----------KNENIFSLKINGNLARFPEKFTQIVDGN 171
           L  +   ++  G                    +     ++   G                
Sbjct: 312 LGNLLENAVRHGAGTVTIEVAPVAATGGESGAERGTAVTVSDEGPGIPEESMSRVFTRFW 371

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             S      +  Y V  +   +   +               L 
Sbjct: 372 RGSKRGGTGLGLYIVKGIVEAHGGTITVGRGPGGGAEFRFTLP 414


>gi|218531287|ref|YP_002422103.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|218523590|gb|ACK84175.1| histidine kinase [Methylobacterium chloromethanicum CM4]
          Length = 632

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            +       +  L A+  L   + HD  + +  I +S +LL    +  E  +        
Sbjct: 246 ERTEEALRQAQKLEAVGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAPERRERYVAAISD 305

Query: 54  --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R          +   +  +  ++        R+          +
Sbjct: 306 TVDRAAKLTGQLLAFARRQSLKPEVFAACDSVRALSDMMGTLTGSCIRIVTDLPEGTCFV 365

Query: 112 SRERAK---ILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKING 155
             ++++    L+N+ + A  ++                  +             S+   G
Sbjct: 366 HADQSQFDTALVNMAVNARDAMEGEGQLTIRVLGVEGMPPIRGQAAVEGPYVAVSISDTG 425

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 ++  +I +    +        +    V   A ++   +       H    +  L
Sbjct: 426 VGI-PGDRLERIFEPFFTTKGVGQGTGLGLSQVFGFAKQSGGEVTVASGLGHGATFTMYL 484

Query: 214 EK 215
            +
Sbjct: 485 PR 486


>gi|119512919|ref|ZP_01631982.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
 gi|119462415|gb|EAW43389.1| Multi-sensor Hybrid Histidine Kinase [Nodularia spumigena CCY9414]
          Length = 632

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++       ++ +  L S I HD+ + +  I  + +LL+    ++   +L+ +   +A  
Sbjct: 252 ESQFLRAQRLESIGTLASGIAHDLNNVLAPIMMTAQLLESQMHDERSRRLLPILISNAKR 311

Query: 63  -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   L F R   G    +     + +I+Q+I++       V          +S + 
Sbjct: 312 GASLVNQVLSFTRGLEGERTLLQLKHLIIEIQQIIKETFPKSIEVTSQIPPHLWTVSGDA 371

Query: 116 ---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNL 157
               ++L+NL + A  ++P+GG                         +  + ++   G  
Sbjct: 372 TQLHQVLMNLCVNARDAMPKGGNLKILAENLLVDENYARMNIDTQIGSYVVITVMDTGMG 431

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE   +I +    +        +    V+ + + +   +  +            L 
Sbjct: 432 I-SPEILDRIFEPFFTTKETGKGTGLGLSTVMGIINSHGGFVKVQSQPGKGSQFQVYLP 489


>gi|152974105|ref|YP_001373622.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152022857|gb|ABS20627.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 338

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 69/237 (29%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + K       S      L S I HDI +P+ +I   ++ L +      E          +
Sbjct: 96  LEKVQIEAKKSQKARKQLLSSISHDIRTPLTSIIGYIDALKDGIATSKEEELEYLEILSN 155

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------S 103
               LK +     +   +D+       EQ+    I  +  ++                  
Sbjct: 156 KSNSLKQLVDEIFHMAKIDADELPFKEEQLDLSEITRETLIEFLPELSKYHIELKIDIPE 215

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                   S    +++ NL   A     +G  + + + +  NE    +   G      + 
Sbjct: 216 KPCLITGDSFHIIRVMNNLIKNAIHYGKQGAILGVKLLEHHNEYHILVWDKGPGIPHQDL 275

Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++   +     +  S  +       L  +++ R+  E I          + K
Sbjct: 276 EHVFERMYRIDQSRTLSSRSSGLGLAIAKALVEKHRGRIWVESIPWERTTFGFSIPK 332


>gi|332525160|ref|ZP_08401337.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332108446|gb|EGJ09670.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 751

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + + I    S+     L  + + H+I +P+ A+    +L+        +   + + R + 
Sbjct: 363 LEREIAARSSATKSAFL--ATVSHEIRTPLNAVLGVADLMTATPLSDEQRRHVDVFRHAG 420

Query: 58  MSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104
            +    +  +                       L  +  +++   A      V       
Sbjct: 421 QTLAALIDDLLDLGKIEAGRLELVVEPFVLRASLDSVAALLQPRAAAKGLRFVLDVDEDL 480

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   R   + L NL   A     RG     + + +     F+++  G      ++ 
Sbjct: 481 PAWVSGDRRRVEQALTNLLGNAIKFTARGEVSLQAARSAAGGVRFTVRDTGIGIAPAQQA 540

Query: 165 TQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +        +        A +    L  E         +  L 
Sbjct: 541 LVFEPFVQADDRITRDYGGTGLGLAITRATAQQMGGDLRLESRPGVGSTFTLELP 595


>gi|313899083|ref|ZP_07832610.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
 gi|312956282|gb|EFR37923.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridium sp. HGF2]
          Length = 468

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 62/231 (26%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M   +  +  +      +   + H++ +P+  I +  EL  E   +              
Sbjct: 239 MMDRLEASFQAEK---QVTRDMSHELRTPVTVILSQCELSLEEEQDKSTYADALRLIQRQ 295

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------------VQVSWTG 106
             ++  +         ++       + Q+    +                    Q+    
Sbjct: 296 GQKMSVLINDMLMMTRMEQKRDSICMVQLDFSSLCASVCEDLRLIREKNIALSWQLEEHV 355

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EK 163
             +       ++L NL   A+      G + + ++    E + S+  +G           
Sbjct: 356 MVMGNRELLQRLLANLIANAYRYGKEHGHIQVDLKQEHAEVLLSVTDDGRGIAKDQLAHI 415

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +   +     +    V  +A  +   +  E +       +  + 
Sbjct: 416 WQRFYQADASRSNQGSGLGLAMVQEIAQLHHGYMKVESVQGKGSCFTFCVP 466


>gi|310824787|ref|YP_003957145.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397859|gb|ADO75318.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 555

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------M 50
           + +          L AL  + S I HD+ + + A+   LE+L                 M
Sbjct: 178 LEQARAALARQEHLRALGEMSSGIAHDLNNTLNAMRLRLEMLQRDAAFAPHQAKNLKSLM 237

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSW 104
           Q++  +        +F R  F  +     L G+           +         ++++  
Sbjct: 238 QIVSDAGTRVRHLQEFSRQRFEPSQEQVHLHGIIHEAVELARDNIEHRARNEGVKLRIEN 297

Query: 105 TGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
               +        +   + LNL + A  ++P GG V +      ++ + +++  G     
Sbjct: 298 EVPVLPAVNGEAADLRYVFLNLLLNARDAMPHGGTVHLRGTVCASKVVITVEDEGTGIPQ 357

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +            +       +       L          V +    
Sbjct: 358 DHLDSIFLPFFTTKGAQGTGLGLSMAYGVVSRAGGTLTAANRPKGGAVFTLTFP 411


>gi|226227148|ref|YP_002761254.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226090339|dbj|BAH38784.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 885

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 76/230 (33%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVM 50
           + ++      +  L AL      I HD  + + AI  + ELL +             E++
Sbjct: 511 LEQSREQLRQAQKLEALGAFAGGIAHDFNNYLSAIATNAELLRDELPLLSSHRLEASEIL 570

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              + +S      L F R    +   +D    +  + +++   +     V+++   +   
Sbjct: 571 GAAQRASALTRQILVFSRRQVVHDERLDVNSAIHALRRLLSRLVGEQIEVRITVAPDAPR 630

Query: 111 LSRER---AKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +     ++L+NL   A  ++P GG     + + +  +    +  +G     PE   +
Sbjct: 631 VMFDHGRLEQVLMNLAANARDAMPAGGCLTISTERTTAGDLRLRVSDSGAGI-PPEVLPR 689

Query: 167 IVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +        +    V  +    +  ++          +     
Sbjct: 690 VFEPFYTTKTRERGTGLGLAMVYSIVTAARGEIVVTSDVGQGTEIVITFP 739


>gi|218887817|ref|YP_002437138.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758771|gb|ACL09670.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1007

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 64/244 (26%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            K +   L  +  + A+  L   I HD  + +G +    E+     +E   +   +  + 
Sbjct: 621 RKQLEARLRQAQKMEAIGTLAGGIAHDFNNILGVMMGYTEMSLDQTEEGDAQHRRLTEVL 680

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            +   A   ++ +             +      +     +       V    +  +    
Sbjct: 681 AAGRRARDLIRQILTFSRQEEPSRLPLPPLAPIKETVRLLRATLPANVDIRLDLAETGPL 740

Query: 114 -----ERAKILLNLFMVAHASLPRGGKVTI----------------SVQDSKNENIFSLK 152
                +  ++++NL   A  ++   G V                  S+          ++
Sbjct: 741 LANLSQLQQVIMNLCANAAHAMKEHGGVLHLALDAVELDEDEAAARSLPAPGGYARLRVR 800

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+     +    I D    +    +   +    V  +   +   +  +          
Sbjct: 801 DTGHGI-PADIMENIFDPFFTTKKPDEGTGMGLALVHGIVTAHGGAVAVQSTVGVGTEFE 859

Query: 211 ALLE 214
            LL 
Sbjct: 860 VLLP 863


>gi|198274559|ref|ZP_03207091.1| hypothetical protein BACPLE_00711 [Bacteroides plebeius DSM 17135]
 gi|198272613|gb|EDY96882.1| hypothetical protein BACPLE_00711 [Bacteroides plebeius DSM 17135]
          Length = 1346

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 24/228 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------------IEDEVMQLIRL 55
             L+   L     + I H+  +P+  I   LE L +                   +QL  L
Sbjct: 816  RLNQNKLR--FFTSISHEFRTPLTLIIGQLEKLMQTSQLSPSVYSNVLLAYKSGVQLKEL 873

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTGEKIDL 111
                   R +           ++ +  L +   + + +        +  +     E    
Sbjct: 874  IGELLDFRKQEQGKMKLKVCRMNLVNFLNETYLLFQPYAESKQIHLEFHKSQDDIELWFD 933

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A   +P  GK+ + V  +  E  FS++ NG+  +  +   +I D  
Sbjct: 934  WKQMRKVINNLLSNAVKHVPSQGKIVMEVGVTDEEAWFSVEDNGSGIQPADI-DKIFDRF 992

Query: 172  VESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +S++D        I       +   +  ++  E            + 
Sbjct: 993  YQSSLDTEINVGTGIGLALTKGIVELHHGKISVESAQGKGTKFIVRIP 1040


>gi|297582880|ref|YP_003698660.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141337|gb|ADH98094.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 693

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 26/231 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----------VGIEDEVMQLIRL 55
           + +  L AL  + S   H++ +P+ ++    E L +            G     +Q+IR 
Sbjct: 451 IQTDKLSALGLMASSFAHEVNNPLASVQIYAEDLSDRLTEDEAELLESGDMAHYLQVIRK 510

Query: 56  SSMSAI----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGE 107
           +           L F R        +     + +   ++   +          +      
Sbjct: 511 NIDRCKTITGNLLNFSRKENWEERDIRVRQVVEESLVLMNHSLNKQGVDVTVTEEEGLPA 570

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARFPEKFT 165
               + + +++ +N    A  ++        +I +     + +  +  NG+  R  +   
Sbjct: 571 IRGDALKLSQVFVNFIQNAIDAMAGKTAPALSIRLYQEGQDLLVDVADNGSGIRPEDL-D 629

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D    S        +       +  +    L  E       V    L 
Sbjct: 630 KLFDPFFTSKPTGKGTGLGLSVCYGIIKQMNGVLEVESEPGEGAVFRVRLP 680


>gi|148262814|ref|YP_001229520.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
 gi|146396314|gb|ABQ24947.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter uraniireducens Rf4]
          Length = 644

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 66/242 (27%), Gaps = 29/242 (11%)

Query: 1   MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           M +         + S  L +L  L + + H+I +P+  I NS +L+ E            
Sbjct: 392 MRREKEEAQADAIRSSHLASLGELAAGVAHEINTPVNTIINSADLILESDDRTATEHDAA 451

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQVSWTGEK 108
           +           +     +            +  +      +       + + ++     
Sbjct: 452 VIKKHGRRIAIIVSSLLFFARRPALEKTPFAVAALLHGTLDMIGARLRQENIAITEQIPP 511

Query: 109 I-----DLSRERAKILLNLFMVAHASLPRGGKVTIS-----------VQDSKNENIFSLK 152
                    ++  ++ LN+ + A  +L                      + +     +  
Sbjct: 512 DLAEVLVHPQQIEQVFLNILINAMHALDEKHGGGYDGKRLEISASELFINGRPFVRITFH 571

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG     PE   ++ +  V +    + +       +  ++   L  E        +S  
Sbjct: 572 DNGIGI-PPELLNRVTESFVTTKQTGNGLGLSICRQIIADHGGFLRIESRVGEYATVSVD 630

Query: 213 LE 214
           L 
Sbjct: 631 LP 632


>gi|227543689|ref|ZP_03973738.1| signal transduction histidine kinase [Lactobacillus reuteri
           CF48-3A]
 gi|300908751|ref|ZP_07126214.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
 gi|77745277|gb|ABB02539.1| signal transduction histidine kinase [Lactobacillus reuteri]
 gi|227186336|gb|EEI66407.1| signal transduction histidine kinase [Lactobacillus reuteri
           CF48-3A]
 gi|300894158|gb|EFK87516.1| sensor histidine kinase [Lactobacillus reuteri SD2112]
          Length = 443

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 18/226 (7%), Positives = 61/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRLSSM 58
                +          +   H++ +P+  I   + L+   G +   +     + I   + 
Sbjct: 221 RQYQVMQREK---EFIANASHELKTPLAGILGHVNLIRRHGDKHPELIAKSLRYIDQEAQ 277

Query: 59  SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                +  +             ++    +    + ++          +         + +
Sbjct: 278 RMSQLINELLILEGHQTKKLTEINLSQVVLAEVKSLQGAYHQKIITDLDPELSYRITTGD 337

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171
              ++ NL   A    P    + + +    ++ I S+   G         + F +    +
Sbjct: 338 FQSLVHNLLENAAKYSPPDSTINVQLTADDHQIILSVADQGQGIARENREKVFERFYRED 397

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    I    V ++  +   ++     +    + +  L K
Sbjct: 398 ESHSNKVAGSGIGLAIVKMIIEKYHGKITIRDNEPSGTIFTVYLPK 443


>gi|88809221|ref|ZP_01124730.1| two component sensor histidine kinase [Synechococcus sp. WH 7805]
 gi|88787163|gb|EAR18321.1| two component sensor histidine kinase [Synechococcus sp. WH 7805]
          Length = 478

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 56/220 (25%), Gaps = 21/220 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              S + H++ +PI  I      L          +   + ++   S      +  +    
Sbjct: 245 QFASTVSHELRNPITLIGGYSRRLLRRSDNLSDDQRHQLGIVEEESRRLGRLVTDLLALT 304

Query: 72  G--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-----IDLSRERAKI 118
                        +     +     +          ++     +              + 
Sbjct: 305 RAETGSLQLDLKPLSVCDAVQQAIDLAGGAGERRFLLRPDDGIDPHTLQAWADRDRVVQC 364

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
           L+NL   A    P+   V I    + +     ++ +G      E    F +   G   + 
Sbjct: 365 LVNLIENACKYSPQQSPVEIGCSTTPSVVELRVRDHGPGIPPEERSLIFERFRRGQHNTG 424

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I    I    V  L  + +  +  E  +    V    L +
Sbjct: 425 IPGSGIGLAVVSTLVSQMEGEVSVEDGEGGGAVFVISLRR 464


>gi|289432805|ref|YP_003462678.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT]
 gi|288946525|gb|ADC74222.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. GT]
          Length = 1262

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 23/235 (9%)

Query: 2    AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
             +       S     L A+  + + I H+I +P+  +     +L E         E +Q+
Sbjct: 884  EEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFASILMEREDLPADVMEELQI 943

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSW 104
            I   S   +  +K M         V             L     V++       R     
Sbjct: 944  INSGSQRVVEIVKRMLTFARQAKPVRSSVNITELIDSTLDLRSYVLKTANIEVVRHYEPD 1003

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFP 161
                   S +  +++LNL + A  S+ +  +    TI V+        S + NG      
Sbjct: 1004 LPLLTVDSGQMQQVILNLILNAEYSMKKAHEKGILTIRVKKEGEWVRMSFRDNGLGM-SA 1062

Query: 162  EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++      +    +   +       +  E++  +  E I       +  L 
Sbjct: 1063 ETLGKLFQPFFTTKDPGEGTGLGLSLSHGIILEHEGTIRGESILGEGAEFTIELP 1117


>gi|228967034|ref|ZP_04128071.1| hypothetical protein bthur0004_38380 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792658|gb|EEM40223.1| hypothetical protein bthur0004_38380 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 424

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKGETIIIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|298530575|ref|ZP_07017977.1| integral membrane sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509949|gb|EFI33853.1| integral membrane sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 487

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 65/229 (28%), Gaps = 17/229 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            + +   L  +  L AL  L + + H++ +P+  +    +            +  MQ IR
Sbjct: 258 QEELQARLRQAEKLAALGQLAAGVAHELGTPLSVVSGKAQRAQRKKGLPPELNATMQEIR 317

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKI 109
                    ++ +             + +            E+       + +     +I
Sbjct: 318 QEVERMENIIRQLLDFSRRNEQQKRNVSMKQLARSAHASAEEEARNTGHELSIQEPDREI 377

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFTQI 167
            +  +  +I   L  +   +L         +   ++     F +  NG      +  +++
Sbjct: 378 HIKADPTRIEQALVNLLKNALQSSSNALARISWGEDSGWAWFQVDDNGPGI-SEDIKSKL 436

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +        +    V  +A E+   +     D    +    L 
Sbjct: 437 FEPFFTTKSVGMGTGLGLAVVHGIAEEHSGYVEVGQSDMGGAMFRIWLP 485


>gi|153007213|ref|YP_001381538.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030786|gb|ABS28554.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 667

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45
           +       L +  L AL  L + I H++ +P+ AI   L +L +                
Sbjct: 429 LKTAQDQILRTRRLAALGSLGAGIAHELNNPMTAITGYLAILRKQLGPASPQGELISHAQ 488

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           E        +  + +    +       ++        +   E  +       +       
Sbjct: 489 EQAARVARVIEDLRSFADQERAAQGQRFSLVRPVRAAVDLYEDRLRAAGIEVRIRFDEPL 548

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF 164
            +      +  +++ +L   A  ++P+GG + +SV     +     +   G      +  
Sbjct: 549 PDTQGDPVQLQQVVAHLVENAINAMPQGGVLEVSVGSIDGDALRLRVADTGKGI-PSQLR 607

Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   ++ ++L E  +     ++ LL 
Sbjct: 608 ERIFDPFFTTKDQAGRVGLGLSVSHSIVEAHRGKILVESEEGTGSAITVLLP 659


>gi|156743609|ref|YP_001433738.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
 gi|156234937|gb|ABU59720.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
           13941]
          Length = 1034

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 70/234 (29%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +    +   ++ +  L   + HD  + +  I  S +L    L         +Q I+ S+ 
Sbjct: 654 QTQLMHAQRLEAIGRLAGGVAHDFNNILTVISGSADLALTTLPSDSPAYPDIQAIQQSAR 713

Query: 59  SAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A   ++ +    R    +  ++D    +  +  +I   I  D R+          +  +
Sbjct: 714 RATHLVRQLLTFARRQPSHPQTIDVNALIDGMVPLILRLIGEDIRLTWMPAPHPCPIRID 773

Query: 115 RAK---ILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSLKINGNLARFPE 162
             +   +L+NL + A  ++P              T  +         S++  G      E
Sbjct: 774 PHQFEQVLMNLIVNARDAMPEGGALVIATSQTAPTGDIVVETPYIRISVQDTGVGIPV-E 832

Query: 163 KFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I +    +        +     + +  ++   +  E            L 
Sbjct: 833 VKAHIFEPYFTTKAPGQGAGLGLATCLGIVQQHAGFIRCESQPGQGARFDVYLP 886


>gi|110598715|ref|ZP_01386978.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339660|gb|EAT58172.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 604

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 72/233 (30%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRL 55
           +++   +  ++L   + + + H + +P+ ++  S+ LL E           + ++     
Sbjct: 365 RDVTQIIEQLELKRSVIATVSHQLRTPLTSLRMSIYLLLEERIGTLNSKQAELLLAAREE 424

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------IEDFIAVDKRVQV-----SW 104
           S   + I    + L    +G     I      ++           A DKRV +       
Sbjct: 425 SERLSHILDDLLDLNRIESGKAHLNIQPASPFRLATEGVDPFTAEARDKRVNLVNTVPEG 484

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161
             E +        +  NL   A    P  G +T+S  + ++   FS+  +G         
Sbjct: 485 VSEVMADPERIRHVFANLLSNALRFTPPDGSITVSACEDEDNVRFSVANSGEGIASEHLE 544

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F Q      +       +    V  +   +   +  E       +    L 
Sbjct: 545 HLFEQFYRVPGQRDESGIGLGLSIVKEIVEAHGGTVGAESNPGTGSIFYFTLP 597


>gi|83945614|ref|ZP_00957960.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850980|gb|EAP88839.1| non-motile and phage-resistance protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 849

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 69/244 (28%), Gaps = 33/244 (13%)

Query: 3   KNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLEL--------LDEVGIE 46
           + +  N     + A           + + H++ +P+ AI+   E+        L     +
Sbjct: 578 QELAANYEQEKIRAEEANRSKSEFLANMSHELRTPLNAINGFSEIMAGEMFGPLGHERYQ 637

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
           D V  ++        +    + ++    G +          +VIE  + + +      + 
Sbjct: 638 DYVRDILSSGQHLLSLINDILDMSKIEAGKMQLQPEPLMPAEVIEQCVRIMRARAEEKSI 697

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                     E     R   +++LNL   A    P GGKV +    + +  +  +   G 
Sbjct: 698 ELTVEGSELPEITADPRALKQVILNLMSNAVKFTPEGGKVKLRGFQAADGVVLQVSDTGI 757

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                +   ++                   +       L   +   L  +        +S
Sbjct: 758 GISEDDL-QRVGRPFEQIESQHSKKHQGSGLGLALSKSLIEMHGGALRIDSRLGEGTTVS 816

Query: 211 ALLE 214
             L 
Sbjct: 817 FTLP 820


>gi|310815577|ref|YP_003963541.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Ketogulonicigenium vulgare Y25]
 gi|308754312|gb|ADO42241.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Ketogulonicigenium vulgare Y25]
          Length = 411

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 59/225 (26%), Gaps = 22/225 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DEVMQLIRLSS 57
            S  L AL  + + + H++  P+ A+   L     LL     +        +  LI    
Sbjct: 179 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRKRPDEALSAFQRIDDLIDRMG 238

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSR 113
                   F R         D    +     ++E  +   K   V               
Sbjct: 239 SITRQLKSFARKGTDAFEPFDMRNAISSALAMMEPQLKARKIAIVRTLPSTPVLVLGDRL 298

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +        +++          +++ NG      +    + +   
Sbjct: 299 RMEQVIINLLRNAFDATQGTPHPEVTITLAQGETVTLTVRDNGPGI---DDLDALFEPFY 355

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    D   +       +  +   RL               L +
Sbjct: 356 TTKAPGDGVGLGLAISSGIVADLGGRLTAHNATSGGAAFEVQLPR 400


>gi|307256989|ref|ZP_07538765.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306864473|gb|EFM96380.1| hypothetical protein appser10_9910 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 586

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I     +L E  + D+  + ++  ++SA+              
Sbjct: 86  SVLMATISHELRTPLNGIIGLSRILLEGELTDQQREYLKTINISAVSLGHIFSDIIDLEK 145

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                       ++ I                 +   ++IL
Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
            NL   A    P GG + +SV+   N    FSLK  G      E+               
Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 265

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L            +  ++
Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 306


>gi|269139259|ref|YP_003295960.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|267984920|gb|ACY84749.1| PAS/PAC domain protein [Edwardsiella tarda EIB202]
 gi|304559167|gb|ADM41831.1| hypothetical protein ETAF_1723 [Edwardsiella tarda FL6-60]
          Length = 1520

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 59/245 (24%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            +     L +  L A           + + H++ +P+ AI   L LL + G+        
Sbjct: 743 QRQAEATLQAAKLAAENANQAKSAFLANMSHELRTPLNAILGMLTLLLKSGLTHRQADYA 802

Query: 54  RLS-------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVD 97
             S              L + ++  G          L ++ Q           +  + V 
Sbjct: 803 TKSEAAARALLRLLNDILDYSKIEAGKMELETEPFSLCNLLQDLAVILSSSSRQKPVEVL 862

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKI 153
             +  S     +  S    ++L+NL   A     RG                   F ++ 
Sbjct: 863 FDIDPSLPHWLVGDSLRLQQVLINLGGNALKFTERGEVTLFIRLLAQDQQTVTLHFGVRD 922

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      ++       +              +               L  E       +
Sbjct: 923 TGIGIAPEKQRAIFSGFSQAEASITRRFGGTGLGLSISQRFVTMMGGTLQVESEPGKGSL 982

Query: 209 LSALL 213
               L
Sbjct: 983 FHFTL 987


>gi|260174381|ref|ZP_05760793.1| two-component system histidine kinase, FrrD [Bacteroides sp. D2]
 gi|315922648|ref|ZP_07918888.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696523|gb|EFS33358.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 482

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +  +N     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENWIELYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|217037909|gb|ACJ76426.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 19/229 (8%), Positives = 55/229 (24%), Gaps = 25/229 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF 66
           S    +   + + H++ +P+  I    ++++    +     ++  L+        +    
Sbjct: 407 SNKAKSTFLATMSHELRTPLNGILGMAQIIESNIKDEEQHKQIKVLLESGDHLLSLLNDI 466

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRE 114
           +  +      ++          VI+        +             ++     I     
Sbjct: 467 LDFSKIEQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIIDNNINEKTIFIGDKPR 526

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVD- 169
             +I+ NL   A     +G              +      ++  G   R           
Sbjct: 527 IRQIIFNLISNAVKFTHKGSITLNFSHTLTAKGEQAIQIKVQDTGIGIRKKRLKHIFEPF 586

Query: 170 ----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         +    V  L    K  +     +      + +L 
Sbjct: 587 IQAETSTTRQYGGTGLGLAIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635


>gi|218676127|ref|YP_002394946.1| putative sensor protein [Vibrio splendidus LGP32]
 gi|218324395|emb|CAV25783.1| putative sensor protein [Vibrio splendidus LGP32]
          Length = 537

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 63/238 (26%), Gaps = 29/238 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    + +      L  + + H+I +P+  I    E+L +  +     +++     S+ 
Sbjct: 34  AKEDAISANKAKSAFL--ANMSHEIRTPLNGIIGMAEILSQSQLSANQQEVLEDIESSSH 91

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L                + L+       +++     +         ++  + +     
Sbjct: 92  SLLVLLNDILDLSKIESGNLMLSPHNADLREAVYDSVSVILSKAISKDIELDINIDAQTP 151

Query: 108 K--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L NL   A     +G   T       +    +   S+  +G     P
Sbjct: 152 TQLFFDEYRVRQVLTNLLSNAIKFTSKGTITTDIAYTPMSLGRGKLECSVSDSGIGI-EP 210

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           EK   I +        +        +       L       +    +       +  L
Sbjct: 211 EKLESIFEPFTQEDGSITRQFGGTGLGLAICRQLVDLMGGYITARSVKGGGSTFTFCL 268


>gi|222110689|ref|YP_002552953.1| pas/pac sensor signal transduction histidine kinase [Acidovorax
           ebreus TPSY]
 gi|221730133|gb|ACM32953.1| PAS/PAC sensor signal transduction histidine kinase [Acidovorax
           ebreus TPSY]
          Length = 465

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 65/247 (26%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +++++     +  +     + + H+I +P+  +   +E L             ++++   
Sbjct: 192 LSRDVTALEQAEAMRRDFVANVSHEIRTPLTVLMGFVETLQTLQLSNEERARYLRMMSQQ 251

Query: 57  SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           ++     ++ +                    +  +      G     +       K  Q+
Sbjct: 252 AVRMQNLVQDLLTLSRLEGSPPPSMHEWVAVSTLLRRCEDEGRALSALLTQNQPGKPHQI 311

Query: 103 SWTGEKIDLSRERAK--------ILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKI 153
           ++   +   +  +           L NL   A    P G         +      F ++ 
Sbjct: 312 TFPTAEAAQAAGQVAGNAAELQSALANLVNNAVRYTPPGGSITVAWDVEPDGSARFMVRD 371

Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           +G     PE   +I +                 +    V  +   +   L    +     
Sbjct: 372 SGPGI-EPEHLPRITERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHGAALQVASVVGQGS 430

Query: 208 VLSALLE 214
             + +  
Sbjct: 431 TFTVVFP 437


>gi|168798240|ref|ZP_02823247.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC508]
 gi|189379117|gb|EDU97533.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC508]
          Length = 756

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 70/232 (30%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q    ++     
Sbjct: 389 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 448

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 449 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 508

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +         ++              +VT S    ++     +  +G         +
Sbjct: 509 ENAIINLVMNVRDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGCGM-SQAVKS 567

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 568 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 619


>gi|167748369|ref|ZP_02420496.1| hypothetical protein ANACAC_03113 [Anaerostipes caccae DSM 14662]
 gi|317472096|ref|ZP_07931428.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
 gi|167652361|gb|EDR96490.1| hypothetical protein ANACAC_03113 [Anaerostipes caccae DSM 14662]
 gi|316900500|gb|EFV22482.1| hsp90-like protein [Anaerostipes sp. 3_2_56FAA]
          Length = 497

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I   +        L S I HD+ +PI AI   +E + +      E M     +  +
Sbjct: 249 LKESIEARIIYEKQNRDLISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTIYN 308

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
               +  +         +DS I   +  ++  +    D   ++    E+  +        
Sbjct: 309 KANDMDVLINELSLYSKIDSNIIPYNFRKIDINAYFKDCVDEIGSDLEQKGMMFSYSNYC 368

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFP 161
                         +++ N+   A     +              +   ++K NG      
Sbjct: 369 SANVAVMADPEQLKRVMNNIINNACKYTNKAKGKVSITLKELDRKIQVAIKDNGIGISKE 428

Query: 162 E---KFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    ++         +       +  E+   +  E        +   L K
Sbjct: 429 DLPNIFRRTYRADMSRNSAGGSGLGLSICKKIIEEHGGEIWAESRLRSGTTIFFTLNK 486


>gi|197120363|ref|YP_002140790.1| GAF domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197089723|gb|ACH40994.1| sensor histidine kinase, GAF domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 765

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 62/233 (26%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           +++     L    L A+  + + I H++  P+ +I      L      +        L  
Sbjct: 532 LSEAQENLLQKERLAAIGEMAAGIAHELKGPLVSIGGFAGRLARKLPQDTSEWAHADLIV 591

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKI 109
              +     +     ++          D+          V          V   +   K+
Sbjct: 592 REVLRLEGILSEILLFSKKTTICYTRCDLSEVVKESLAVVTPPLEEKQISVNAKFPRHKL 651

Query: 110 DLSRERA---KILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162
            L  +     ++ +N+ + A  ++        +V+ +  D K      +   G      E
Sbjct: 652 LLLGDGQQLKQVFINIILNALDAMGTGGALNIQVSAAEMDDKEAVQVKISDTGGGIPL-E 710

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               I      +      +       +   +  ++         V    +L K
Sbjct: 711 SLNSIFTPFFTTKGSGTGLGLPIANRIITNHGGKIQVTNNPGLGVEFRVILPK 763


>gi|126455824|ref|YP_001074202.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242312265|ref|ZP_04811282.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
 gi|126229592|gb|ABN93005.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106a]
 gi|242135504|gb|EES21907.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 1106b]
          Length = 1032

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 529 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 588

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 589 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 648

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 649 LSSIGEGVARHYTGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 708

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 709 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 768

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 769 TVTVALP 775


>gi|326470773|gb|EGD94782.1| serine/threonine protein kinase [Trichophyton tonsurans CBS 112818]
          Length = 2374

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 29/238 (12%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
            N+     +    ++  + I HD+ +P+  +    ELL     +   +  V  +   +   
Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDPKQDVYVESIRVCADTL 1934

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106
              +    +  +    G +   I   +                  +    V+    +    
Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHREKGLETVEDLDSIDPDL 1994

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
              +       +I +NL   ++   P G     ++ +            +   G      +
Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIVEEDTPEKIRVTCKVADTGIGISEEQ 2054

Query: 163  KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
               ++             +     +       +  +    R+  +  +     ++  L
Sbjct: 2055 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|325686294|gb|EGD28333.1| phosphate regulon sensor histidine kinase protein PhoR
           [Lactobacillus delbrueckii subsp. lactis DSM 20072]
          Length = 552

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     E   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHRIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK+ I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKIKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVIFP 541


>gi|322382892|ref|ZP_08056727.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153161|gb|EFX45616.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 606

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 58/233 (24%), Gaps = 31/233 (13%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ A+    E L     ++  +    +Q+I   S      +  
Sbjct: 372 ERIRSEFVANVSHELKTPVAAVKGFAETLMAGALEDKEMARSFLQIIYDESDRLNRLIGD 431

Query: 67  --------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRER 115
                    +        VD    + +  Q+++             V             
Sbjct: 432 ILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENELYIEADEDRL 491

Query: 116 AKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +IL+NL     +  P             ++            +   G      +   +I
Sbjct: 492 RQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGIGIPEKDLP-RI 550

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +     +    V  L   +   +  E         +  L 
Sbjct: 551 FERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNIELP 603


>gi|295690957|ref|YP_003594650.1| multi-sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432860|gb|ADG12032.1| multi-sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 495

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVMQLIRL 55
           + +     +    L A+  + S + H++  P+ AI N L     L E G E +  ++   
Sbjct: 245 LQELQNELVHVSRLTAMGEMASTLAHELNQPLSAIANLLTGSRRLMERGRESDQAKIRDA 304

Query: 56  SSMS----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSW 104
              +                F+R       +      + +   +           V+++ 
Sbjct: 305 IDRAAAQALRAGEVIHRMRDFVRRGASEREAESLSKLIEEASALALIGEKERQVDVRLNL 364

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTI-----SVQDSKNENIFSLKINGN 156
             +   +  +R ++   L         ++             S    +  +  S+   G 
Sbjct: 365 DPKADAVFADRVQVQQVLLNLIRNGIDAMQVQDPKKRALLISSAMTEEGWSQVSVDDTGP 424

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   ++    + +      +       +   +  R+  E            L 
Sbjct: 425 GI-ADEVRERLFQPFMTTKPQGMGVGLSISRSIIEAHGGRIWAEANSAGGARFCFTLP 481


>gi|259503599|ref|ZP_05746501.1| sensor histidine kinase [Lactobacillus antri DSM 16041]
 gi|259168423|gb|EEW52918.1| sensor histidine kinase [Lactobacillus antri DSM 16041]
          Length = 489

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 18/236 (7%), Positives = 63/236 (26%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           M   +   +      +   S + H++ +P+  I   LE+L   G +D  +          
Sbjct: 250 MLDRMQRYIDQQ---SQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPQVLDDSLAASLV 306

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             + ++      +   +  ++   +      +  +          +  +    +    ++
Sbjct: 307 ETKRMKNLVQEMLDLSRAEQVEINFRDQRTVVNDVVHQVFNNFKMLYPEFTFTLDDDVDE 366

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++L+ L   A        ++ +++    +     ++  G      +  
Sbjct: 367 KIVANIYRDHLEQVLVILCDNAVKYSGERKEIHLTLSRGMSTVEIGVQDFGEGIAPADA- 425

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ D               + +       L       +  E       +   +L 
Sbjct: 426 QRVFDRFYRVDKARSRKKGGNGLGLSIAQRLIEGYHGSISLESSLGAGSLFKVVLP 481


>gi|228902515|ref|ZP_04066667.1| hypothetical protein bthur0014_36900 [Bacillus thuringiensis IBL
           4222]
 gi|228857105|gb|EEN01613.1| hypothetical protein bthur0014_36900 [Bacillus thuringiensis IBL
           4222]
          Length = 424

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|228909837|ref|ZP_04073658.1| hypothetical protein bthur0013_39870 [Bacillus thuringiensis IBL
           200]
 gi|228849672|gb|EEM94505.1| hypothetical protein bthur0013_39870 [Bacillus thuringiensis IBL
           200]
          Length = 424

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|228922759|ref|ZP_04086057.1| hypothetical protein bthur0011_37440 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836814|gb|EEM82157.1| hypothetical protein bthur0011_37440 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 424

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|228941170|ref|ZP_04103724.1| hypothetical protein bthur0008_38100 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974103|ref|ZP_04134674.1| hypothetical protein bthur0003_38570 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980694|ref|ZP_04141000.1| hypothetical protein bthur0002_38600 [Bacillus thuringiensis Bt407]
 gi|228779033|gb|EEM27294.1| hypothetical protein bthur0002_38600 [Bacillus thuringiensis Bt407]
 gi|228785614|gb|EEM33622.1| hypothetical protein bthur0003_38570 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818500|gb|EEM64571.1| hypothetical protein bthur0008_38100 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326941780|gb|AEA17676.1| sporulation kinase B [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 424

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|228989444|ref|ZP_04149431.1| hypothetical protein bpmyx0001_2180 [Bacillus pseudomycoides DSM
           12442]
 gi|228770292|gb|EEM18869.1| hypothetical protein bpmyx0001_2180 [Bacillus pseudomycoides DSM
           12442]
          Length = 286

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 67/237 (28%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S      L S I HDI +P+ +I   ++ L +     E+E ++ + + S 
Sbjct: 39  LEKVQVEAKRSQKARKQLLSSISHDIRTPLTSIIGYIDALKDGIAASEEEKLEYLEIISN 98

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            A    + +   F                      +   L +    +       +     
Sbjct: 99  KANSLKQLVDEIFNMAKLDADEFPLKEEQLDFSEITRESLIEFLPELSKHSIELQINIPE 158

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                   S    +++ NL   A      G  V I + ++ N+    +   G      + 
Sbjct: 159 EPCIITADSFSLIRVISNLLKNAIHYGHSGKIVGIELLETTNDYQLLIWDKGPGISTDDL 218

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++   +           +       L  +N  ++  E I          + K
Sbjct: 219 ENVFERMYQIDQSRNPSHGGSGLGLAIAKALVEKNGGQIWVESIPWKKTTFGFSIPK 275


>gi|229192217|ref|ZP_04319182.1| hypothetical protein bcere0002_38700 [Bacillus cereus ATCC 10876]
 gi|228591167|gb|EEK49021.1| hypothetical protein bcere0002_38700 [Bacillus cereus ATCC 10876]
          Length = 424

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMSLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|206971173|ref|ZP_03232124.1| sporulation kinase B [Bacillus cereus AH1134]
 gi|218235962|ref|YP_002368809.1| sporulation kinase B [Bacillus cereus B4264]
 gi|218899165|ref|YP_002447576.1| sporulation kinase B [Bacillus cereus G9842]
 gi|228954283|ref|ZP_04116310.1| hypothetical protein bthur0006_36540 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229071509|ref|ZP_04204728.1| hypothetical protein bcere0025_36790 [Bacillus cereus F65185]
 gi|229081262|ref|ZP_04213766.1| hypothetical protein bcere0023_38970 [Bacillus cereus Rock4-2]
 gi|229111481|ref|ZP_04241032.1| hypothetical protein bcere0018_37260 [Bacillus cereus Rock1-15]
 gi|229152207|ref|ZP_04280400.1| hypothetical protein bcere0011_37460 [Bacillus cereus m1550]
 gi|229180283|ref|ZP_04307626.1| hypothetical protein bcere0005_36280 [Bacillus cereus 172560W]
 gi|206733945|gb|EDZ51116.1| sporulation kinase B [Bacillus cereus AH1134]
 gi|218163919|gb|ACK63911.1| sporulation kinase B [Bacillus cereus B4264]
 gi|218545396|gb|ACK97790.1| sporulation kinase B [Bacillus cereus G9842]
 gi|228603030|gb|EEK60508.1| hypothetical protein bcere0005_36280 [Bacillus cereus 172560W]
 gi|228631169|gb|EEK87805.1| hypothetical protein bcere0011_37460 [Bacillus cereus m1550]
 gi|228671863|gb|EEL27156.1| hypothetical protein bcere0018_37260 [Bacillus cereus Rock1-15]
 gi|228702029|gb|EEL54511.1| hypothetical protein bcere0023_38970 [Bacillus cereus Rock4-2]
 gi|228711596|gb|EEL63552.1| hypothetical protein bcere0025_36790 [Bacillus cereus F65185]
 gi|228805411|gb|EEM52003.1| hypothetical protein bthur0006_36540 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 424

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|154498428|ref|ZP_02036806.1| hypothetical protein BACCAP_02417 [Bacteroides capillosus ATCC
           29799]
 gi|150272496|gb|EDM99681.1| hypothetical protein BACCAP_02417 [Bacteroides capillosus ATCC
           29799]
          Length = 497

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 58/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLV--ALL--CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL- 55
           +A+ I   L  ++    + +   S   H++ +PI  I     +L+  G +D   +   + 
Sbjct: 241 LAEAINAMLDRINEAYRSQMRFVSDASHELRTPIAVIQGYANMLNRWGKDDPETRQEAID 300

Query: 56  --------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI-----EQVIEDFIAVDKRVQV 102
                           L   R              L  +      +            + 
Sbjct: 301 AISAEAASMKELVEQLLFLARGDNESMHVEFEDFDLTAMAAEVLRETEMIDQTHQFSARW 360

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         + +  L   +    P GG + + V+        +++  G       
Sbjct: 361 EENVTVHADVGLIKQAMRILVDNSIKYTPAGGCIRLGVEKRNGTARLTVQDEGQGIDAAS 420

Query: 161 -PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P  F +    +           +       +   +         +     ++ +L 
Sbjct: 421 LPHIFERFYRTDQSRARQTGGTGLGLAIAKWIVDRHGGWFEVTSREGIGTRMTVVLP 477


>gi|149173454|ref|ZP_01852084.1| sensor histidine kinase [Planctomyces maris DSM 8797]
 gi|148847636|gb|EDL61969.1| sensor histidine kinase [Planctomyces maris DSM 8797]
          Length = 480

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 69/227 (30%), Gaps = 15/227 (6%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDE---VMQLIRL 55
           + ++    +      A  LL + I H++ +P+  I + ++LL+    ++     +  +  
Sbjct: 231 LQESQALLVQQEKHAAFGLLAAGIAHEVGNPLAGISSLVQLLNRHNNDEYTNKRLDEVDA 290

Query: 56  SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGE 107
                       + F R A            + +   + + +     +  +         
Sbjct: 291 QLRRIQRILRELIDFSRPATTERNRCQINELITESLNISKYYKRKKGKNIITRFAEDLPV 350

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +  +  ++ LNL + A  +   G  + I+ +    + + S+  +G      E   ++
Sbjct: 351 VQVVRDQLVQVFLNLILNAMDATEEGESIEITTEARGGQIVISIHDDGEGI-REEDKARL 409

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENK-IRLLPEIIDDHNVVLSALL 213
                 +      +  +    +   +    +  +            L
Sbjct: 410 FQPYFTTKAKGTGLGLFVCKNILEHSNSGTIEIDDTVKDGARFIVSL 456


>gi|152995279|ref|YP_001340114.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150836203|gb|ABR70179.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 936

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 54/236 (22%), Gaps = 29/236 (12%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------------- 50
              + S  L +   + I H++ +P+ AI    + L +   + +                 
Sbjct: 289 REAMESNRLKSQFLANISHEVRTPLNAILGYTKTLQKDITDTQQRLYVDTIEQSTNSLLT 348

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
               ++  S + A             T   D    L       E  I +           
Sbjct: 349 IIGDILDFSKIEAGKLNLESNHFNLKTLLDDVYQILSINLLTKEKQIDLVPEFSQDVPEW 408

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFPEK 163
            +  S    +IL NL   A     +G   T          +    F +   G      + 
Sbjct: 409 FVGDSTRVRQILTNLIGNAIKFTHQGSVRTKVSIASQTPQEITLSFQIIDTGIGIAEHKI 468

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++                   +       L  +   ++               +
Sbjct: 469 N-RLFKPFSQVDTSTTRQFGGTGLGLVITKKLVEQMNGKIEVSSDPSIGSTFRFTI 523


>gi|20091382|ref|NP_617457.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916518|gb|AAM05937.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 740

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 72/244 (29%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            +     L     VA +         + + H++ +P+ +I    +LL E     + ++ +
Sbjct: 470 ERKEAEKLLQEKQVAEVANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKIYGDLNEKQL 529

Query: 51  QLIRLSSMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           + +   S S    L                + L +        L  + ++   I D   +
Sbjct: 530 KAVGNISRSGKHLLNLINDILDLSKVEAGKLELEYKEFELSSKLNSIKNLLSPIADRKMI 589

Query: 97  DKRVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           + ++QV  +           A+I+ NL   A       G V I  +   +    ++K  G
Sbjct: 590 EVQIQVDESLNTIRADEARFAQIMYNLLDNAIKFSKENGLVEIDAKRKGDTVEITVKDYG 649

Query: 156 NLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +  ++                 +    +    V  + + +   +            +
Sbjct: 650 IGIKVEDQSKLFKPFSQIASFSSKKVQGTGLGLALVKQIVNLHGGYIWFNSRIGEGSTFA 709

Query: 211 ALLE 214
             + 
Sbjct: 710 FTIP 713


>gi|87303321|ref|ZP_01086114.1| PAS protein [Synechococcus sp. WH 5701]
 gi|87282216|gb|EAQ74177.1| PAS protein [Synechococcus sp. WH 5701]
          Length = 549

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 56/245 (22%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMD-LVA-----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           A+ +   L+  + L A        S I H+I +P+ A+    +LL +  ++ +  +L+  
Sbjct: 135 ARTLELQLARDEALAATGAMGQFLSTISHEIRTPLNAVIGMSDLLLDTSLDGQQQELVHT 194

Query: 56  SSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            + SA +                    +        S+           V    + +   
Sbjct: 195 INSSAELLLRLINDILDLSKIEARKMKISSETFSLRSLVLDCCRMMDAAVRAKRLELRCS 254

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKING 155
                    I       +I+LNL   A      G                E    +   G
Sbjct: 255 FSDDPPDALIGDGLRIRQIVLNLLNNAIKFTSHGSVDVKIGWRPLTSSAIELDLVVADTG 314

Query: 156 NLARFPEKFTQI------VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                              +    S      +       L       +            
Sbjct: 315 TGISEDFLSKIFQDFTQEHNQAHASHHHGTGLGLAICDRLCRLMGGSIEAVSQLGQGSRF 374

Query: 210 SALLE 214
              L 
Sbjct: 375 HVRLP 379


>gi|75760903|ref|ZP_00740914.1| Sporulation kinase B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
 gi|74491607|gb|EAO54812.1| Sporulation kinase B [Bacillus thuringiensis serovar israelensis
           ATCC 35646]
          Length = 409

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 181 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 240

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 241 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 300

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      E+  ++   
Sbjct: 301 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIIIRVKDSGVGM-TKEQLARLGQP 359

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 360 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 403


>gi|333010340|gb|EGK29773.1| HAMP domain protein [Shigella flexneri VA-6]
          Length = 679

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 74/232 (31%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
               L S  L A+  L   + HD  + +  I  SLEL++    +   +Q  + ++     
Sbjct: 386 EEALLHSQKLKAVRQLTGGLAHDFNNLLAVIIGSLELVNTNSPDAPRIQRAQQAAERGAL 445

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLTIEIEAQSPAWSAWIDVSQL 505

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+        +
Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616


>gi|332704445|ref|ZP_08424533.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554594|gb|EGJ51638.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 499

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 60/233 (25%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + ++      S  L  +  L + + H I +P+ ++   L  L         + E  ++I 
Sbjct: 258 LRESREVLAQSEKLAVVGKLAAGVAHSIRNPLTSVKMRLYTLQRTLHLDDAQKEDFEVIS 317

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKI 109
                    ++           V   + L D+       +     +    V V   G   
Sbjct: 318 EEVGQIDGIVRSFLEFARPPKLVVRPVSLSDVVDSTLALLRHKLESYHVDVLVEREGPLP 377

Query: 110 DLSRERAKILLNLFM---VAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++  +  ++   L      A  ++         +    +       +  +   G      
Sbjct: 378 EVMADPEQVKEVLVNLVLNACEAMGVGGTITIAEEEGHIAPQGRVTLLRISDTGPGVPET 437

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I +    +  +   +       +  E+   L               + 
Sbjct: 438 -VRARIFEPFFTTKEEGSGLGLAIAARIMTEHGGWLHLASGQGRGATFVVGMP 489


>gi|270263750|ref|ZP_06192019.1| hypothetical protein SOD_e03800 [Serratia odorifera 4Rx13]
 gi|270042634|gb|EFA15729.1| hypothetical protein SOD_e03800 [Serratia odorifera 4Rx13]
          Length = 897

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 68/231 (29%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
           A+    +     L   L + + HD+ +P+  +    E+L                ++ Q 
Sbjct: 653 AEEAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSSHAPQASQIRQQ 712

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKI 109
           +  ++      L   R+  G          L +I       +       +++V    E +
Sbjct: 713 VLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGASLHMLEPLLTQHQIKVELPPELV 772

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            ++ +     ++  NL   A+        + I            +  NG      +    
Sbjct: 773 LVNCDGSLLERVFTNLLENANKYAGIDAIIGIRAHTLPEWLEVEVWDNGPGIPEGKKQLI 832

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 833 FDKFARGNKESAIPGVGLGLAICRAIIEVHGGRIWAENGANGGASFRFVLP 883


>gi|237653851|ref|YP_002890165.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
 gi|237625098|gb|ACR01788.1| PAS/PAC sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
          Length = 902

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 60/237 (25%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSL---------------ELLDEV 43
           A+     L     L+ +  + S + H++  P+ AI N                 ++L  +
Sbjct: 655 AREQEERLQRTSRLITMGEMASTLAHELNQPLAAIANYCAGSVTRLQSGKARTEDVLAAM 714

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                  +            +K           V+ L        +      +    ++ 
Sbjct: 715 QKASFQAERAGKIIRRVREFVKKSEPQRCAVDLVEVLEDAIGFADIDAHRTRIRIHTELE 774

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNL 157
                         ++LLNL      ++                   +    ++   G+ 
Sbjct: 775 PGLPPVYADRIMIEQVLLNLIRNGLDAMADALPEARVLTVRVRTVGADAVEVAVIDRGHG 834

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   Q+      +  +   +       +   +  RLL +   +   + +  L 
Sbjct: 835 I-SEEGRAQLFTPFYTTKAEGMGMGLNICRSIVEFHNGRLLVDANPEGGTIFTFTLP 890


>gi|297200794|ref|ZP_06918191.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
 gi|197712365|gb|EDY56399.1| two-component system sensor kinase [Streptomyces sviceus ATCC
           29083]
          Length = 551

 Score =  111 bits (277), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 64/232 (27%), Gaps = 26/232 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLS 56
            +     +          +   H++ +P+ +I    EL               +  I   
Sbjct: 294 RQQSEMRVRQ------FVADASHELRTPLASIRGYAELTRRGREEIGPDTRHALGRIESE 347

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--- 113
           +    + ++ + L               D+  ++ D I+  +   +              
Sbjct: 348 AGRMTLLVEDLLLLARLDAGRPLQFEQTDLIPLVVDTISDARAAGMDHNWRLDLPDEPAL 407

Query: 114 ------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164
                    ++L+NL   A    P G  VT  VQ         ++ NG        P  F
Sbjct: 408 VSGDAARLQQVLINLLGNARKHTPPGTTVTARVQRRGPWMCVDVEDNGQGIPSDLLPHVF 467

Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G+        S  +    V  +A  +   +  + +     V +  L 
Sbjct: 468 ERFARGDSARSRATGSTGLGLAIVQAVATAHGGAVTVDSVPGR-TVFTMHLP 518


>gi|329765439|ref|ZP_08257018.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138080|gb|EGG42337.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 441

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 81/227 (35%), Gaps = 16/227 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQL 52
           + +     + S    A+  L SR+ HD+ +P+  I  +++LL +  I        E ++L
Sbjct: 215 LDQKTKQLIQSERFSAIGELSSRLAHDLRNPLAVIKATIDLLKQKSIAQSDTYTTERLEL 274

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +  S      ++  +      T        L  I Q     I +   V +      I   
Sbjct: 275 VSDSIFRMTHQIDGVLDYVRKTPITKETHSLRKIIQNSLIPIKIPANVTIILPENDIMYK 334

Query: 113 RERAK---ILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +  K   +  NLF+ +  ++    G++ I + ++ N  I  ++ +G      ++  QI 
Sbjct: 335 CDSIKMDIVFGNLFLNSIQAIGKEQGQIIIKIGETANSVIMEIQDSGKGV-ENDQVEQIF 393

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    +  +   +    V  +  ++K  +            +    K
Sbjct: 394 EPLFTTKQEGTGLGLSSVKSIVEQHKGTITFRNNP---STFTMTFPK 437


>gi|304309810|ref|YP_003809408.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
 gi|301795543|emb|CBL43741.1| Putative two-component sensor histdine kinase [gamma
           proteobacterium HdN1]
          Length = 816

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 65/238 (27%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A       S     +   +++ H+I +P+  +    +LL +  ++ +  Q + +   S 
Sbjct: 406 LAAREAQTESRAK--SQFLAQMSHEIRTPMNGVIGMADLLRQTKLDVQQKQYLDIIVNSG 463

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIE-DFIAVDKRVQVSW---- 104
              L  +     ++             +D    + +  Q+           ++  W    
Sbjct: 464 RTLLTIINDILDFSKIAAGKMDLEIRPIDFKQIVRECIQLFTLPAEEKAIYLKKDWKEGA 523

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +      S    ++L NL   A           +V   ++DS+      ++  G      
Sbjct: 524 SPIIYGDSTRLRQVLTNLLSNALKFTEKGGITLRVKPCLRDSEPYLQVEVEDTGIGISV- 582

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   ++                   +       L       +     +    +    L
Sbjct: 583 ENQQRLFSAFSQAEASTTRRFGGTGLGLAISKQLVELMGGEIGVRSEEGVGSIFWFTL 640


>gi|224543643|ref|ZP_03684182.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM
           15897]
 gi|224523416|gb|EEF92521.1| hypothetical protein CATMIT_02853 [Catenibacterium mitsuokai DSM
           15897]
          Length = 529

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 20/224 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-SMSAIIRLKFMRL 69
           S  +     S + H++ +PI AI    ELL +  I DE  + + LS   + +  +  +  
Sbjct: 303 SQKMREEFFSSVSHELKTPITAIRGYSELLSQGFINDENQKKMMLSKIQTEVTNMSSLIN 362

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVD-----------KRVQVSWTGEKIDLSRERAKI 118
                  +DS   + +   V    +  D             V++    + I      ++I
Sbjct: 363 DILMLSRLDSDDLIVEKVPVKMQALMKDISQDYEGLLLKYNVELHTDVDPITYIGNGSQI 422

Query: 119 LLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172
              +      A       G V + +   ++     +K  G      +    F +    + 
Sbjct: 423 ETLISNLVSNAIKYNKEDGHVYVHIYSKEDNMFIEVKDTGIGIPLADQGRVFERFYRVDK 482

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +    V  +   NK  +           ++  L 
Sbjct: 483 GRSRIKGGTGLGLAIVKHIVSYNKGTVKLHSQLGEGTCITITLP 526


>gi|170748607|ref|YP_001754867.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655129|gb|ACB24184.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 628

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 27/239 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            + +   L  S  + AL  L   I HD  + + AI  SLEL      +      +++  R
Sbjct: 250 QRTLEARLRQSDKMQALGTLAGGIAHDFNNLLTAILGSLELAGPKVADQPRVQRLIENAR 309

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            ++          L F R        VD    +  +  +    +     V+         
Sbjct: 310 GAAERGASLTKRLLSFSRAHDLQARPVDVNTLITGMSDLFGRSLGGLVTVRTDLEDGLPA 369

Query: 111 LSRERAKILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNL 157
           +  +  ++ L +  +   +               R                 S+   G  
Sbjct: 370 VQVDPDQLELAVLNLCINARDAMPDGGAITVATRRLAISGDPEIADGPYLGISVTDEGTG 429

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   ++ +    +        +    V  LA ++K RL+ + +      +   L 
Sbjct: 430 I-PEEILRRVCEPFFTTKAVGQGTGLGLAMVFGLAQQSKGRLVIDSVVGRGTRVELALP 487


>gi|218781735|ref|YP_002433053.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763119|gb|ACL05585.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 729

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 56/243 (23%), Gaps = 30/243 (12%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
            K++   L     M+ +  L   I HD  + + +I    EL  +        +       
Sbjct: 339 RKDLEERLKHSQRMESIGTLAGGIAHDFNNILNSIIGFTELALDDAKPGAQQEECLQEVL 398

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--QVSWTGEK 108
                +S      L F R        V       +  Q++   +    ++   +      
Sbjct: 399 KAGTRASGLVKQILTFARRGSEEPKPVRVSSITKETLQLLRSTVPPSIKIKQNIQSESLV 458

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK----------------VTISVQDSKNENIFSLK 152
           +    +  ++LLNL   A  ++   G                                ++
Sbjct: 459 MADPTQIHQVLLNLCTNAVQAMEEKGGLLQVDLADVLVDAELASRTPNLHPGEYLKIGIR 518

Query: 153 INGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             G         +                +    V  +       +L           + 
Sbjct: 519 DTGYGIPADAIQSIFEPYFTTKGFGKGTGLGLAVVHGIVQNCGGEILASSKVGGGSEFTI 578

Query: 212 LLE 214
            L 
Sbjct: 579 YLP 581


>gi|154500841|ref|ZP_02038879.1| hypothetical protein BACCAP_04526 [Bacteroides capillosus ATCC
           29799]
 gi|150270341|gb|EDM97667.1| hypothetical protein BACCAP_04526 [Bacteroides capillosus ATCC
           29799]
          Length = 881

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------------EVGI 45
            +       +  L A L   I HD+ +P+ +I  +   L                 ++  
Sbjct: 640 KEAAAVLAKNEQLRANLLRSISHDLRTPLTSISGNASNLLSNGALFDTKTKEQMYTDIYD 699

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   +  +  + +S     +        T  VD ++         +              
Sbjct: 700 DAMWLINLVENLLSVSRLEEGKMNLHMSTELVDEVVAEALRHINRKSVEYRLNVQNSEDY 759

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++L+N+   A    P G ++ I  +        S+  NG       K  
Sbjct: 760 VLAQIDAKLIIQVLINIVDNAIKYTPPGSQIDIGWKRQGRFIYISIGDNGPGIPDQAKPH 819

Query: 166 QIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                   S        S  +       + + +   +       H  + + 
Sbjct: 820 IFDMFYSASNRIADSRRSMGLGLALCKSIVNAHGGEITVADNVPHGSIFTF 870


>gi|91200167|emb|CAJ73211.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 569

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 66/228 (28%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSS 57
           +       + S  L  +  +   I H+I +P+  I      +     +++ ++    +  
Sbjct: 340 LKDAQERLVRSEKLAVIGNMAGYIAHEIRNPLVTIGGFARSIARETADNKTIKNSAEIII 399

Query: 58  MSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                  K + +   ++           +  + D    + +    +  + V    E +  
Sbjct: 400 DEVSRLEKILAVVMDFSKVAKPAKVKTQVNEIVDNTISLMESYFKNIGIDVVKKYESMIP 459

Query: 112 -----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  +  ++ LN+F  A  S+  GGK+ +            +   G      +    
Sbjct: 460 DIVVDQDQIRQVFLNIFKNAAESMQNGGKLIVGTTKEDEYVRIDITDTGVGM-DADTIEN 518

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I         +   I       +  +++  +  +   +     S  L 
Sbjct: 519 IFTPFYTKKREGTGIGLAVSQKIVDDHEGFIKVKSELNQGATFSIFLP 566


>gi|84624296|ref|YP_451668.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|84368236|dbj|BAE69394.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 1364

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I +++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVITLEK 872


>gi|13471100|ref|NP_102669.1| two component sensor-kinase [Mesorhizobium loti MAFF303099]
 gi|14021844|dbj|BAB48455.1| two component sensor-kinase [Mesorhizobium loti MAFF303099]
          Length = 993

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 60/240 (25%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDE 48
                   +S +L         A L + I H++  P+ A+  +       L+ E      
Sbjct: 750 RAEEALRRASEELARAMNAASLAELSASIAHEVNQPLAAVVANSNACERWLMAEPPNVQR 809

Query: 49  VMQLIRLSSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
             +++                     K    A   T     +     +         V  
Sbjct: 810 AQKIVGRIIRDANSAADVVSRIRALFKQSLDARLDTTLGGVVDQARTLMAEEAARSRVPI 869

Query: 99  RVQVSWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKIN 154
            + V      I     +  ++L+NL      ++   G      + V    +     +   
Sbjct: 870 NIDVERDLPVIALDRVQIQQVLVNLMRNGIEAMDGVGDPKSLAVRVHRVGDAIQTEVSDW 929

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G      E+  ++ +    +      +       +   +  RL  E  +         L 
Sbjct: 930 GPGV---EQLDRMFEPFFTTKEQGMGMGLAISRSIVESHGGRLWVEKNEPRGATFIFTLP 986


>gi|323496999|ref|ZP_08102022.1| nitrogen regulation protein NR(II) [Vibrio sinaloensis DSM 21326]
 gi|323317843|gb|EGA70831.1| nitrogen regulation protein NR(II) [Vibrio sinaloensis DSM 21326]
          Length = 348

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 70/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+ +  +  + +  ++    A
Sbjct: 117 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDQSLTEYTQIIIEQA 175

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +         G     +  + L  + Q++E  I     ++  +     +   + 
Sbjct: 176 DRLRSLVDRLLGPQKPGKKQHENLHLILEKVRQLVELEIGQRVVIERDYDPSLPEFLMDA 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 236 DQIEQALLNIVSNAGQILQQQNNGKITIRTRTVHQANIHGQRCKLAARVEIIDNGPGI-P 294

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V        +       L  +++ ++  E       + +  L 
Sbjct: 295 ADLQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIDVESWPGR-TIFTIYLP 347


>gi|311281365|ref|YP_003943596.1| integral membrane sensor hybrid histidine kinase [Enterobacter
           cloacae SCF1]
 gi|308750560|gb|ADO50312.1| integral membrane sensor hybrid histidine kinase [Enterobacter
           cloacae SCF1]
          Length = 760

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            + +   L     M  V  L   + HD  + +  I  SLEL+     +       +Q   
Sbjct: 387 RQELEEALLHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELVTPDGADSPRISRALQAAE 446

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             ++     L F R    +  +V+    L ++ +++   +     +++           +
Sbjct: 447 RGALLTQRLLAFSRKQSLHPRAVEMKTLLENLGELMRHSLPATISLEIEAQSPAWPAWID 506

Query: 115 RAKI---LLNLFMVAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++   ++N+ M A  ++              +VT S     +     +  +G      
Sbjct: 507 VGQLENAMINMVMNARDAMEGQAGVIRIRTWNQRVTRSDSRRHDMVALEVIDHGCGM-SQ 565

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 566 AVKAQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLHLPR 621


>gi|302038857|ref|YP_003799179.1| putative hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
 gi|300606921|emb|CBK43254.1| putative Hybrid sensor histidine kinase [Candidatus Nitrospira
           defluvii]
          Length = 1033

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 19/246 (7%), Positives = 66/246 (26%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + +       S  + A+  L   + HD  + +  I    EL    L       + ++ ++
Sbjct: 644 LRRTEAQLQQSQKMEAVGRLAGGVAHDFNNMLTVIRGYSELVLSRLAPTDGFRKELEEVK 703

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------- 106
            ++  A      +            ++ L  +   +E  +       +            
Sbjct: 704 KAADRASGLTGQLLAFSRRQFIAPKVLDLNSVIHNMEGMLRRLLGEDIVELCTVLDPGLG 763

Query: 107 EKIDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSL 151
           +      +  ++++NL + A  ++P               +         +  +     +
Sbjct: 764 QLKADPGQVEQVIMNLAVNARDAMPNGGRLTVETSNVQFGQRRNRPPMGAEPGSYVALIV 823

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           +  G+     +  + + +    +        +    V  +  ++   +  E         
Sbjct: 824 RDTGHGM-DEDTQSHVFEPFFTTKEKGKGTGLGLSTVYGIVKQSGGCIEVESKPGRGATF 882

Query: 210 SALLEK 215
                +
Sbjct: 883 KIYFPR 888


>gi|293376179|ref|ZP_06622424.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292645166|gb|EFF63231.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 623

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 63/220 (28%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           +++ H++ +P+ AI   ++LL       + ++ I +   S+ + LK +     ++   D 
Sbjct: 394 AKVSHELKTPLNAIKGYIQLLKLSIDNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIEDG 453

Query: 80  LIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLNLF 123
            + L      +     V + + +                              +I++NL 
Sbjct: 454 KVKLEIDTIDLFHTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIINLM 513

Query: 124 MVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174
             A                   +++      +K  G      +  +        + ++  
Sbjct: 514 SNALKFTEHGKIEVSFDLDYQTENEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSISR 573

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       LA      L+ E   +     +  L 
Sbjct: 574 QFGGTGLGLSISKRLAEVMGGNLIVESKVNVGSTFTLFLP 613


>gi|262165686|ref|ZP_06033423.1| signal transduction histidine kinase [Vibrio mimicus VM223]
 gi|262025402|gb|EEY44070.1| signal transduction histidine kinase [Vibrio mimicus VM223]
          Length = 573

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 68/246 (27%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNS------------L 37
           + + +      + L   L            + + H++ +P+ A+               +
Sbjct: 185 LQRLVEIRTRELRLAQKLAEQANQSKSNFLAMMSHELRTPLNAVLGLIDILRGDSTSYQV 244

Query: 38  ELLDEVGIEDEVMQLIRLSSMSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
           ELL+++    E++ +I    +           +   +           +   +   +  +
Sbjct: 245 ELLEQMENSAELLLIIINDILDLSRIESGHFSLHCHWIDLEKKLDQSLVYHRQIAQDKGV 304

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
             + +   +   E    S    +IL N+   A     + G+V I +   ++     ++  
Sbjct: 305 QFNVQSNKNTAIEYYTDSARLTQILFNIVGNAIKFTKQ-GRVDIQLNYIEDGIDIQVQDT 363

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          Q+    +              +       L       +  +   D   +
Sbjct: 364 GIGIEPKRI-EQLFTPFIQADNSITRNYGGTGLGLAITKHLVELMGGAINVDSKIDIGTL 422

Query: 209 LSALLE 214
            +  + 
Sbjct: 423 FTLRIP 428


>gi|254422278|ref|ZP_05035996.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196189767|gb|EDX84731.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 606

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           A+     + + +L AL   L S   H++ +P+ +I  S ++L+   +      + + IR 
Sbjct: 370 AQTQSALIKTQELSALKIRLFSMASHELRTPLASILLSAQVLETDLDRTERPRIYRRIRA 429

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------- 108
           ++      L  +                     +    I  + R                
Sbjct: 430 AAKRMNQLLGDLLTLARAESGKLEFSPETLNLSLFCKQIIDEVRCSFDVPPTVNFIVSST 489

Query: 109 -----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                    +    +L NL   A        +V++SV    +  +F +   G      + 
Sbjct: 490 VPTAAYFDPQLLRAVLTNLLSNAVKYSKELPQVSLSVTCQLHNLVFQVSDRGIGIHKADQ 549

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    G     I    +    V      +   LL E         +  L 
Sbjct: 550 ARLNEAFYRGKNVGHIQGTGLGLSVVSACLQLHHGTLLCESALGEGTTFTVTLP 603


>gi|193215882|ref|YP_001997081.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193089359|gb|ACF14634.1| PAS/PAC sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1791

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 73/251 (29%), Gaps = 38/251 (15%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
             + +   L  +  + A+  L   + HD  + + A+  + E+L++    +E +        
Sbjct: 1539 RRELEEQLRQAQKMEAVGRLTGGVAHDFNNLLTAVLGNAEILEKKLTGNEFVLKNIERIK 1598

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                  S      L F R   G++  V     + ++  ++E  I     V  S   E + 
Sbjct: 1599 ASATRGSELTRKLLTFSRQKKGFSKPVQINKCIENVIGLMEHTIDKRIDVLTSLCSENLV 1658

Query: 111  LSRERAKILLNLFMVAHASLPRGGK------------------------VTISVQDSKNE 146
            +  +  ++ + L  +A  +                                  ++ +++ 
Sbjct: 1659 VMGDENQLEMVLLNLAVNASDAMSPVLDMKKEGKLCFETRIEKISKTFAEQHQLELAQSY 1718

Query: 147  NIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD 204
               S+   G      E   +I +    +        +           ++  +L E    
Sbjct: 1719 VRISVSDTGTGI-PDEIRQKIFEPFFTTKDIESGTGLGLAITYGAVKSHRGAILLESEVG 1777

Query: 205  HNVVLSALLEK 215
                    L +
Sbjct: 1778 VGSTFHIYLPR 1788


>gi|332702027|ref|ZP_08422115.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332552176|gb|EGJ49220.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 604

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 51/221 (23%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + H++ +P+ +I    E L             + +I  ++      L  +      
Sbjct: 373 FVANVSHELRTPLTSIKGYAETLQSDPAASPQAKGFLDIIVKNANHMTKILGDLLNLSRL 432

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDK------------RVQVSWTGEKIDLSRERAKILLN 121
                +        Q        +                       +       ++  N
Sbjct: 433 EADRQAFELAPVDAQAAVMSAYRECESLGRGRGVGLVCRIPEKAVFVLADYDRLVQVFRN 492

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES-TID 177
           L   A    P  G VT+  Q    E +F +   G      E    F +          + 
Sbjct: 493 LIENALRYSPEHGSVTVFHQTGDGEVLFGVSDRGPGIPRDEQAKIFERFYRVEKHRLKMG 552

Query: 178 S-HDIQFYYVILLAHENKIRLLPEI---IDDHNVVLSALLE 214
               +       +   +  R+        +D        + 
Sbjct: 553 GSSGLGLAIAKHIVERHGGRIWVVSPATGEDTGATFYFNMP 593


>gi|331086633|ref|ZP_08335710.1| hypothetical protein HMPREF0987_02013 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409799|gb|EGG89234.1| hypothetical protein HMPREF0987_02013 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 276

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 67/231 (29%), Gaps = 23/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------------GIEDE 48
            K    N+ S      + S I H + +P+  I    ELL E                  +
Sbjct: 51  TKAERENIQS------MISDISHQMKTPLANIMLYSELLQEQTEGEQEKYLAEQIETYAK 104

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSV-DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            ++ + ++ +        +         V   L    +          +   +     G+
Sbjct: 105 KLEFLTMALVKMSRLESDVFKICPSVQRVGSLLRQATEEILPRARQKEIQIEICGDIEGK 164

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-- 165
                +   + L N+   A    P+G ++ +     +     ++K  G   R  E+    
Sbjct: 165 ANFDQKWTQEALYNILDNAVKYSPKGSRIEVEGISYEMYFCIAVKDQGIGIREEERAQIF 224

Query: 166 -QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    ++    +   I  Y    +       +  E  + +  +    L+K
Sbjct: 225 SRFYRSDLVQQEEGIGIGLYLAREIVQREGGYIKVESKEGNGSIFKIFLQK 275


>gi|313905593|ref|ZP_07838955.1| integral membrane sensor signal transduction histidine kinase
           [Eubacterium cellulosolvens 6]
 gi|313469540|gb|EFR64880.1| integral membrane sensor signal transduction histidine kinase
           [Eubacterium cellulosolvens 6]
          Length = 446

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 3   KNICFNLSSMDL--VALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +N        ++   AL+     + + H++ +P+ AI    ELL+   +++E ++     
Sbjct: 209 QNEQLKQDQKEIEKAALIRQEFTANVSHELKTPLHAISGYAELLENEMVKEEDIKPFASK 268

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------ 104
                 R+  +         +D+       E      IA +    +              
Sbjct: 269 IRGESSRMTKLVEDIIDLTRLDNGGDEMKWEDCDLYRIAENAVDSLEVAATALGVEVTVD 328

Query: 105 --TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                   + +    I+ NL   A      GG V + VQ +    + S+K  G       
Sbjct: 329 GSDATTRAIPQLIYSIVYNLCDNAIKYNHSGGSVQVRVQQTSYNIVLSVKDTGIGIPEES 388

Query: 160 FPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +    +      +    +    V      +  ++  +        +   + K
Sbjct: 389 RERIFERFYRVDKSRSKEVGGTGLGLSIVKHAVIIHNGKIEVKSKLGEGTEMIVTIPK 446


>gi|295703343|ref|YP_003596418.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium DSM 319]
 gi|294801002|gb|ADF38068.1| two-component sensor histidine kinase/ response regulator [Bacillus
           megaterium DSM 319]
          Length = 1012

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 66/235 (28%), Gaps = 25/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58
           AK      +     +   S++ H++ +P+ +I    ++L+E     + ++ +  IR    
Sbjct: 635 AKEEAEKANQAK--SEFLSKVSHELRTPLNSILGYAQILEEQGEKDLTEKQLNRIRKILK 692

Query: 59  SAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +    L                       V     + D  ++++        +  +    
Sbjct: 693 AGNHLLYLINETLDLSKIESGHLAINLEPVSVKEAIEDALKIMKPLAKDKHSILYTRFHA 752

Query: 108 KIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             ++          +ILLNL   A    P    +TI    +++    S++  G      E
Sbjct: 753 YQEVFIEVDELRFQQILLNLLTNAIKYSPAYRDITIYTDITQHHVTISIEDKGFGIPASE 812

Query: 163 KFTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +          D   I    V  L             +           
Sbjct: 813 LN-RIFEPFYRVNRLEKDGTGIGLALVKQLVVLMNGTCGVRSEEGKGSTFWVRFP 866


>gi|283852156|ref|ZP_06369429.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283572382|gb|EFC20369.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 550

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 67/231 (29%), Gaps = 27/231 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------------VGIEDEVMQ 51
            S  + AL  L + + H++ +P+  I      + +                     ++  
Sbjct: 318 QSSKMAALGKLAAGVAHEVNNPLAIIMEKAGWMRDLLGEEDIKASPNFQEFEDAVAKIEF 377

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKID 110
            +R +       L F R        +D  + L      +  +           +  +   
Sbjct: 378 HVRRAKDVTHRLLGFARRMEPTQEDIDVNLLLDQTRSFLENEASFRGITFLSDYQKDLPR 437

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFT 165
           ++ +     ++ LN+   A  ++ + G +T++ + +    E    +   G      E   
Sbjct: 438 IASDTSQLQQVFLNIMDNAIDAIDKNGSITVTTRAAPDVPEVEIVIADTGKGM-SKEAMA 496

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +    +   +       +  +   R+     +         L 
Sbjct: 497 KIFDPFFTTKKVGEGTGLGLTISYSIIKKLGGRIEVTSEEGRGTAFHITLP 547


>gi|217422964|ref|ZP_03454466.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
 gi|217393872|gb|EEC33892.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 576]
          Length = 1014

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 630

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 631 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 751 TVTVALP 757


>gi|39726359|gb|AAR30122.1| putative histidine kinase HHK1p [Gibberella moniliformis]
          Length = 2362

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 62/246 (25%), Gaps = 33/246 (13%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53
             +N+     +    ++  + + H++ +P+  +  + ELL +  +  + +++         
Sbjct: 1927 KRNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSDLNKDQLEMADSIRVSAD 1986

Query: 54   ----------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                        S M A     ++          + +  +    +       V     ++
Sbjct: 1987 LLLTVINDILDFSKMEADKMKLYIIAFNPEDMVREVVRAVSYSNREKTSKKNVKIVQNIN 2046

Query: 104  WTGE-KIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLA 158
                          ++L NL   +      G                   F ++  G   
Sbjct: 2047 LPPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARLDKETKEHATLTFWVRDTGIGI 2106

Query: 159  RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--L 209
               +   ++                   +       L     K ++  E  ++       
Sbjct: 2107 PPQQL-AKLFQPFSQADASTARKYGGSGLGLSICKSLIETMMKGKIRLESEENVGTTAWF 2165

Query: 210  SALLEK 215
            +   EK
Sbjct: 2166 TVTFEK 2171


>gi|71735973|ref|YP_275436.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556526|gb|AAZ35737.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 697

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +A+       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSAGL 427

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      +    +
Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546

Query: 210 SALLEK 215
              L +
Sbjct: 547 CLYLPR 552


>gi|148264822|ref|YP_001231528.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
 gi|146398322|gb|ABQ26955.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 897

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 69/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
           + K     L +  + ++  L   + HD  + +  I    +LL      +       +++ 
Sbjct: 513 LRKTEAQLLHAQKMESIGTLAGGVAHDFNNLLTVIGGYADLLRLSLKGDERRVAFALEIS 572

Query: 54  RLSSM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGE 107
                        L F           D  + + ++++ I   +  D  +          
Sbjct: 573 NSVKRGAELTRSLLAFSGKHEPQKRYDDLNLIVANLQKSISRLLRSDITLTFGLCDDRLS 632

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---------------SVQDSKNENIFSLK 152
                 +  ++L+NL + A  +L  GG++ +                     +  + ++ 
Sbjct: 633 VFAERVQIEQVLINLMVNARDALTSGGRIHVATALVEVREAVVTGGVTVPPGSYGLVTVM 692

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG      E   +I +    +        +       +   +  R+  E       +  
Sbjct: 693 DNGVGM-DKETVGRIFEPFFTTKETGKGTGLGLSIAFGIVGNHNGRITVESAPGKGAMFR 751

Query: 211 ALLE 214
             L 
Sbjct: 752 VYLP 755


>gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
 gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 3_1_23]
          Length = 1353

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 71/229 (31%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 826  KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883

Query: 63   RLKFMRLAFGYTG----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107
             L  +     Y              ++   L     +  D +A  K++  +        E
Sbjct: 884  LLHLVNQLMDYRRAELGVFELKAKRENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKE 943

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            ++        I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 944  ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|294678968|ref|YP_003579583.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
 gi|294477788|gb|ADE87176.1| sensor histidine kinase/response regulator receiver protein
           [Rhodobacter capsulatus SB 1003]
          Length = 743

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 56/241 (23%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N     +      L  + + H+I +P+  +    ELL E  + +E    +     S  
Sbjct: 214 ARNKAEAANRAKSAFL--ANMSHEIRTPMNGVVGMAELLGETELNEEQQLYVETIRSSGE 271

Query: 62  IRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             L  +     Y+                       +  +         ++ V +     
Sbjct: 272 ALLTIINDVLDYSKIEAERLKLYPEVFDLERCLHEIMVLLQPSAKDKGVKLLVDYDLFLP 331

Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFP 161
                      +IL NL   A      G      V         E   +++  G      
Sbjct: 332 TRFIADPGRMRQILTNLLGNAVKFTHTGHVLARVVGFERDAEHYELHVTVEDTGIGISPD 391

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214
                  + N          +   +       L H     +  +              L 
Sbjct: 392 NLDHVFGEFNQVEATSNRRFEGTGLGLAITRQLVHLMGGSVWVDSQLGEGSCFGFRVTLP 451

Query: 215 K 215
           +
Sbjct: 452 R 452


>gi|291615283|ref|YP_003525440.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585395|gb|ADE13053.1| multi-sensor signal transduction histidine kinase [Sideroxydans
           lithotrophicus ES-1]
          Length = 450

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 54/211 (25%), Gaps = 19/211 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------------RLKFMRL 69
           + HD+ +P+  I +  + L     +           +                    +  
Sbjct: 229 VSHDLKAPLRGISSLADWLSTDYADKFDEDGKEQMRLLINRVHRMDGLIDGILLYSRVGR 288

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                 +VD    + ++  ++     +   ++       +       ++  NL   A   
Sbjct: 289 VKETMTAVDIGRLVPEVIDLLAPPANIAVTIE-DPLPTVMAEPTRIQQLFQNLLSNAIKY 347

Query: 130 LPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVE----STIDSHDIQFY 184
           + +              +  FS+  NG      + F +I            ++S  +   
Sbjct: 348 MDKPEGRIRINCCAEGKQWKFSVSDNGPGI-KQQHFEKIFQLFQTLAPRDRVESSGVGLA 406

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  +       +  E +          L +
Sbjct: 407 LVKKIVEMYGGTIWVESVVGEGSTFFFTLPR 437


>gi|237509957|ref|ZP_04522672.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
 gi|235002162|gb|EEP51586.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei MSHR346]
          Length = 1032

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 529 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 588

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 589 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHTLLQETVDAYAPLAESKGLAL 648

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 649 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 708

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 709 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 768

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 769 TVTVALP 775


>gi|228919208|ref|ZP_04082579.1| hypothetical protein bthur0011_2370 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840450|gb|EEM85720.1| hypothetical protein bthur0011_2370 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 314

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 72  LEKVRIKAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 132 KSNNLKHLVDEIFNMAKLDANEFPLKEEKLDFSEVTREALIEFLPELSKHNIKLQVLIPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++       +   G      + 
Sbjct: 192 STCPIIADHLSLMRIIGNLMKNAIYYGKNGKTIGVELLETDAAYELLIWDKGPGIPKHDL 251

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L   N   +  + I          + K
Sbjct: 252 QNVFERMYRSEQSRNSSFGGSGLGLSISKALVERNGGHIWVKSIPWERTTFGFSIPK 308


>gi|166711696|ref|ZP_02242903.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1364

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I +++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVITLEK 872


>gi|95929173|ref|ZP_01311917.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
 gi|95134671|gb|EAT16326.1| periplasmic sensor signal transduction histidine kinase
           [Desulfuromonas acetoxidans DSM 684]
          Length = 657

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 62/235 (26%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----------------I 45
            +      ++ +L A     + HD+ +P+ AI    ++L +                   
Sbjct: 421 QRTEQLQRTNKELEAF-SYSVSHDLRAPLRAISGFSQILQDEYSENLSPEASRYLSLVVD 479

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             ++M  +    +      +                 + ++ Q           +++   
Sbjct: 480 NSQMMGTLIDDLLRFSRLNRHELKKQMIDTEALVRQVVDELLQDCVYTFIHAPEIEIGSL 539

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE- 162
                      ++ +N+   A     +     I +          F++  NG        
Sbjct: 540 ERCYGDPALIKQVFINVLSNALKFTQKTSYPHICITSTHQGEIVTFNISDNGAGFDMQYA 599

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F      + +S      +    V  +   ++  +  +   +     S  LE+
Sbjct: 600 EKLFGVFQRLHHQSEFTGTGVGLAIVQRVIARHQGTIWAQAEPNKGATFSFTLER 654


>gi|318040258|ref|ZP_07972214.1| adaptive-response sensory kinase [Synechococcus sp. CB0101]
          Length = 381

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 69/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54
           + +     +  + +   L   + H++ +P+ A   +L+ L    I++         +L  
Sbjct: 143 LRQENETLIERLRVQERLLRMVAHELRTPLTASKLALQSLKLGQIDETRFRDVLGRRLDD 202

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDS---LIGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           +  +S  +                     +    I ++ + ++     +         + 
Sbjct: 203 IEQLSKDLLEVGTTRWEALFNPQRLALGPVAAEAILELEKLWVGRGLELLTDIPTDLPDV 262

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A    P GG+V++++   +      S+  +G      E+    
Sbjct: 263 YADQRRMRQVLLNLLENAFKYTPDGGQVSLTILHRTSQWLQISVCDSGPGIPRDEQERIF 322

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      S      +       +   +  R+               + 
Sbjct: 323 LERVRLPQTSSNTSGFGVGLSVCRRITEVHGGRIWVVSEPGEGACFHFTVP 373


>gi|302036178|ref|YP_003796500.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604242|emb|CBK40574.1| putative Histidine kinase, containing PAS domain S-box [Candidatus
           Nitrospira defluvii]
          Length = 578

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 49/243 (20%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L      A   S         + H+I +P+  +    ELL    + D   +  
Sbjct: 304 RKQQEERLCRAKEAAEAASLAKSQFLANMSHEIRTPMNGVLGMTELLLTTPLNDTQRRYA 363

Query: 54  RLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----D 97
                S    L  +     ++                   L +   +  +          
Sbjct: 364 HTVHNSGTNLLHIINDILDFSKIEAGRLVLEYIPFGLRQLLTETIGLYHEQARKKGLALS 423

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKING 155
             +                +IL NL   A      G        D          +   G
Sbjct: 424 VTMTPDIPDMAHGDPHRLRQILTNLVGNALKFTETGTVAVFVRPDEGRPGRVRIEVTDTG 483

Query: 156 NLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                  +          DG++        +    V  L      +L             
Sbjct: 484 IGIPLQAQEKIFDSFSQADGSMTRKYGGTGLGLAIVKQLVGMMGGQLGLTSTPGQGTTFW 543

Query: 211 ALL 213
             +
Sbjct: 544 FTI 546


>gi|291541633|emb|CBL14743.1| Signal transduction histidine kinase [Ruminococcus bromii L2-63]
          Length = 347

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 59/214 (27%), Gaps = 16/214 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEKYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               V  +       +  E  +         L K
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELPK 341


>gi|209517665|ref|ZP_03266502.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
 gi|209501840|gb|EEA01859.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. H160]
          Length = 789

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 54/233 (23%), Gaps = 23/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60
           AK      +     +   + + H++ +P+ AI    ++L  +  ++   +  + +   S 
Sbjct: 315 AKEHADAANQAK--SDFLAHMSHELRTPLNAILGYAQILKLDTTLDQRQINGLTVIQRSG 372

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
              L  +             + L   +  +E  +                     +    
Sbjct: 373 EHLLMLINDILDIAKIEAGRMELNLSDVSLEQLVHFIAESIRVKATEKGLAFACEMPPDL 432

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       + LLNL   A     +G               F ++  G         
Sbjct: 433 PAGVRVDEIRLRQALLNLLSNAIRFTEQGSVRLSVAFTPPTRLCFEVQDTGIGIDEGRLE 492

Query: 165 TQIVDG----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +         +       L       +  E   D     S +L
Sbjct: 493 EIFRPFEQVSDERHRFGGTGLGLAISRQLVRLMGGEIHVESRRDIGSTFSIVL 545


>gi|163802260|ref|ZP_02196155.1| osmolarity sensor protein [Vibrio sp. AND4]
 gi|159174065|gb|EDP58875.1| osmolarity sensor protein [Vibrio sp. AND4]
          Length = 430

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/209 (11%), Positives = 63/209 (30%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  +   ++      +      + +++ 
Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAQGIISDTEECNEIISQFMDYLKP 279

Query: 70  AFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
               +   VD    + D+      +    +                  + + NL + A  
Sbjct: 280 VNRESFERVDINTIISDVATSEGSYDIDIETELNPTKPVAKGSPIAIKRAVSNLVVNALR 339

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 K++  V   K      ++ NG      +    F     G+     +   +    
Sbjct: 340 YGNGRVKISTGVTADKQLVWVCVEDNGPGIEPSQVARLFEPFTRGDTARGSEGTGLGLAI 399

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++        +       
Sbjct: 400 VKRIVSQHSGSVVVRNRSQGGLSAQISFP 428


>gi|134280682|ref|ZP_01767392.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
 gi|134247704|gb|EBA47788.1| response regulator/sensor histidine kinase [Burkholderia
           pseudomallei 305]
          Length = 1014

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 630

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 631 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 751 TVTVALP 757


>gi|115351649|ref|YP_773488.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115281637|gb|ABI87154.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
          Length = 705

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 56/217 (25%), Gaps = 23/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
           +R+ H+I +P+  +    ELL    +  +  + +     S    L  +     ++     
Sbjct: 32  ARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 91

Query: 78  ---------DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123
                    +    L D+  ++E            +   S             +IL NL 
Sbjct: 92  KLTLERIDFNLHQLLDDVVALMEPNAQRKELELVYQRADSVPQRMRGDPVRLRQILTNLL 151

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A      G     +        +F +  +G     P+   Q+     +          
Sbjct: 152 GNAIKFTEHGHVALSAAYSDDGRIVFKIADSGIGI-APDVAAQLFRPFQQADSSTARKYG 210

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       LA      L  +       V +    
Sbjct: 211 GTGLGLVISRQLAEMMGGTLALDSTPGKGSVFTVTTP 247


>gi|53721153|ref|YP_110138.1| histidine kinase/response regulator fusion protein [Burkholderia
           pseudomallei K96243]
 gi|52211567|emb|CAH37562.1| putative histidine kinase/response regulator fusion protein
           [Burkholderia pseudomallei K96243]
          Length = 1014

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 62/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K     L    + A           + + H+I +P+ AI  +LELL    + ++  + 
Sbjct: 511 LRKESELKLKEARIAADQANKAKSTFLATMSHEIRTPLNAIIGNLELLRRSPLSEQQSER 570

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
           + +    +   L  +      +      + L +I   I   +                  
Sbjct: 571 LHVVESCSNALLHIINDILDLSKVESGQMTLENIPFDIHALLQETVDAYAPLAESKGLAL 630

Query: 106 ---------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLK 152
                               ++L NL   A     RG       +       +     + 
Sbjct: 631 LSSIGEGVARHYAGDPTRIRQVLSNLIGNAIKFTERGHISIDVHRAKAARDGSAIEIWVN 690

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G   R     T        D ++        +       L       +  + + D   
Sbjct: 691 DTGIGIRPDRIATLFDVYTQADASIHRRFGGSGLGLPLCQRLVTIMGGSIEIDSLPDFGT 750

Query: 208 VLSALLE 214
            ++  L 
Sbjct: 751 TVTVALP 757


>gi|75906539|ref|YP_320835.1| signal transduction histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75700264|gb|ABA19940.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Anabaena variabilis ATCC 29413]
          Length = 1399

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK---------- 65
            S + H++ +P+  I     LL     E    ++ ++ I  S+ +    +           
Sbjct: 1020 SILSHELRNPLNTILGWASLLSTHQLEADTVNQGLEAIERSAQAQAHLISDLLDVSRISS 1079

Query: 66   -FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKILLNLF 123
              +R+       +  +     + ++  +   +    Q+       +       +++ NL 
Sbjct: 1080 GRLRMDAQPIELIPIIEAAIAVVRLAAEAKNIHIETQLDPTQKTIVGDPIRLQQVIWNLL 1139

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD--GNVESTIDS 178
              A    P  G++ I+++ +       +   G        P  F +     G+   +   
Sbjct: 1140 SNAIKFTPVRGRIDITLEYTDFHAQIQISDTGQGISPDFLPFIFERFRQADGSRTRSNTG 1199

Query: 179  HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
              +    V  L   +   +  +   +      +  L 
Sbjct: 1200 LGLGLSIVRHLVELHGGTVAAQSPGEGLGATFTIRLP 1236


>gi|118580025|ref|YP_901275.1| histidine kinase [Pelobacter propionicus DSM 2379]
 gi|118502735|gb|ABK99217.1| histidine kinase [Pelobacter propionicus DSM 2379]
          Length = 400

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 68/240 (28%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLI 53
            +        ++ +  L   + HD  + +  I  +  LL+    +               
Sbjct: 21  REENMSRSQKLECIGTLAGGVAHDFNNILTVIIGACTLLEMNAADYPDQMPFVSRIRNYA 80

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++      L F R      G  + +    D+ + +   I  D ++      + + +  
Sbjct: 81  ERAAQLTQDLLIFSRRQAVVMGPENLVEVFHDMHRFLGSIIGEDIQLITDQQEKTVMVMV 140

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTIS--------------VQDSKNENIFSLKINGN 156
           +  +I   L      +  ++PRGG + +                    +  + ++   G 
Sbjct: 141 DLGQIEQVLMNLAANSRDAMPRGGVLRMRLSRVTNDGALPHLEGCPLGDYALMTVSDTGT 200

Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +    V  +  ++   +  +       + S  L 
Sbjct: 201 GI-DRENLCRIYEPYFTTKELHAGAGLGLSVVYGIISQHNGAIHVQSSPGEGTLFSIYLP 259


>gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
          Length = 1603

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 20/234 (8%)

Query: 2    AKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
             + +   L     L     +   H++ +P+  I    E L E  ++ E    + +   S 
Sbjct: 890  ERRMNERLQQVDKLKDQFLANTSHELRTPLQGIIGLSEALLEDELDPERKANLTMVVSSG 949

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEK 108
                  +     ++   ++ I L      +                     +  S + + 
Sbjct: 950  KRLNSLVNDILDFSKLKNADIELDLRPISLHSMADVVLKNISPLVAGKSIELLNSVSVDF 1009

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ 166
               S +  ++   L+ +   ++       I +   +  N+ +  ++  G      ++   
Sbjct: 1010 PAASADENRLQQILYNLLGNAVKFTESGYIKIDALERDNDLVVCVEDTGPGIPPDKRDAI 1069

Query: 167  IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +                +       L   +   +  E   D        L+K
Sbjct: 1070 FQEFTQGDASTTRAFSGTGLGLSISKRLVELHGGTMWLESEIDQGSKFFFSLQK 1123


>gi|317475545|ref|ZP_07934807.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908249|gb|EFV29941.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 594

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     +S M +   +   I H++ +P+  I   L+ L E        + +     + 
Sbjct: 65  LDKEKQEEISQMKIRFYI--DISHELRTPLTLIVAPLQELIERIKGHWEHEKLSYIQRNT 122

Query: 61  IIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
              L  +     Y         +  +      + +       +   +           ++
Sbjct: 123 NRLLHLVNQLMDYRRAELGIFELRPVYANAYKKVLNCFLNYENLSKRKDIDYNLYTELQD 182

Query: 115 RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +    +           A     +G  +T+ +    N  +  +   G      EK  
Sbjct: 183 EELLFDETYLDLIVNNLLSNAFKYTEKGECITVRLYKEDNNLVLQVIDTGVGI-PAEKQK 241

Query: 166 QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +   +  S  +   I    V  L   +   +  E         S  + 
Sbjct: 242 KIFERFYQAESGHEGSGIGLSLVQRLVELHHGHITLESKVGEGSTFSIYIP 292


>gi|254457993|ref|ZP_05071420.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
 gi|207085386|gb|EDZ62671.1| sensor histidine kinase/response regulator fusion protein
           [Campylobacterales bacterium GD 1]
          Length = 798

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 60/237 (25%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +    +   + + H+I +P+  I   + LL +   + +  + +++   S+
Sbjct: 417 LNKAKYEAEKANKSKSEFLANMSHEIRTPLNGIMGFVNLLYKDEKDIKKQEKLKIIKDSS 476

Query: 61  IIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
              +  +     ++                       I    +     +  +++S   + 
Sbjct: 477 YTLIDIVNDILDFSKIESGMLSIEKVPFNILDAISQTILLFRQRAKEKNITIKLSIDDKI 536

Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
                       ++  NL   A         V ++V    N       +  +G      +
Sbjct: 537 PKFIEGDITRTKQVFSNLLSNALKFSNEDSDVKVNVNYLDNTNEIYCEVLDSGVGISPSK 596

Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             T        D +         +    V  L      ++               L 
Sbjct: 597 TDTIFEAFEQEDSSTTRKYGGTGLGLSIVKQLVELMGGKIGVNSELGVGSTFYFTLP 653


>gi|189424607|ref|YP_001951784.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189420866|gb|ACD95264.1| Hpt sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 929

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 62/239 (25%), Gaps = 30/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S     +   + + H+I +P+  I    ELL +  +  +    +R   +SA 
Sbjct: 271 AKEQAEASSRAK--SEFLANMSHEIRTPMNGILGMTELLMDTELNPQQFDYLRSVKVSAE 328

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSWT 105
             +  +     ++      +    I  ++   +                    +V     
Sbjct: 329 NLMDIINDILDFSKIEVGRLETEAIPFMLRSMLGQTLRTLSVRAAQKGLELVFQVDPDLP 388

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARF 160
              I       ++LLNL   A     +G    +  +  +         F ++  G     
Sbjct: 389 DTLIGDPGRLRQVLLNLAGNAVKFTDQGEVELLVSKQQELPGKELLLRFEVRDRGIGI-S 447

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           PE   +I                   +       L       +  E +          L
Sbjct: 448 PEHQQRIFAPFEQADLSTTKKYGGTGLGLAISSRLVQLMGGEIGLESVAGQGSTFWFTL 506


>gi|170748647|ref|YP_001754907.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655169|gb|ACB24224.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 925

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 79/247 (31%), Gaps = 34/247 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            + +   +  +  + A+  L   I HD  + + AI    +LL           + +  I+
Sbjct: 487 QRQLEQQVAQAQKMNAVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPTDPAFQDIMQIK 546

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            ++  A   ++ +            ++ +G+    +   +      +V+   +       
Sbjct: 547 QNANRAAGLVRQLLAFSRRQTLRPEVMNVGEALSELTLLLKRLLGERVALELKHGREVWP 606

Query: 114 ------ERAKILLNLFMVAHASLPRGGKVTISVQD-----------------SKNENIFS 150
                 +  ++++NL + A  ++P GGK+ I  ++                 + +  +  
Sbjct: 607 VKADVNQFEQVIVNLAVNARDAMPEGGKLMIRTENVSDPGAAAGAEGRGGAPAGDHVLIE 666

Query: 151 LKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           ++  G     PE   +I +    +        +    V  +  ++   +  +        
Sbjct: 667 VRDTGQGI-PPELMEKIFEPFFTTKEIGKGTGLGLSTVFGIVKQSGGTIDVQSKVGEGTA 725

Query: 209 LSALLEK 215
               L +
Sbjct: 726 FRIYLPR 732


>gi|170746837|ref|YP_001753097.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653359|gb|ACB22414.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 519

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVM 50
            +     L S       L A+  + S + H++  P+GAI N       LL     E    
Sbjct: 270 TQARLQELQSELAHVSRLSAMGEMASALAHELNQPLGAIANYTKGCRRLLARADPEAIAR 329

Query: 51  ---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVD 97
                    +    +        +F+               + +   +      +     
Sbjct: 330 TMEVLDKTAEQALRAGQIIRRLREFVARGEAEKRVEPVARLIEEASALALVGAREQGIAA 389

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKIN 154
           +       G  +    +  ++L+NL   A  ++ +G +      +          ++   
Sbjct: 390 RVAVDPRAGCVLADRVQVQQVLVNLLRNAREAMHQGDRRELTVEARSVDGETVEITVSDT 449

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G      E   ++    V +      +       +   +  RL  E  +         L+
Sbjct: 450 GPGI-AAEVADRLFQPFVTTKRSGMGVGLSICRTIVEAHGGRLDVERNETGGATFRLTLQ 508


>gi|116748776|ref|YP_845463.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697840|gb|ABK17028.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 822

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 64/245 (26%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           + K +   L  +  + A+  L   I HD  + +  I    E+L    ++     + ++ I
Sbjct: 431 LQKKLQAQLFHAHKMEAIGTLAGGIAHDFNNLLQVIQGYAEMLLFGKEQDDPFQKELEEI 490

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------G 106
             ++       + +        S    I L          +       ++          
Sbjct: 491 FFAAKRGGELTRQLLTFSRRIESKPRPIHLNRQIVETRKLLERTIPKMITIELNLATDLR 550

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSL 151
                  +  ++L+NL + A  ++P G                 +           + S+
Sbjct: 551 PVNADPAQFEQVLMNLAVNARDAMPEGGVLTIETRNVVLDELFCMGQVGVSPGEYVMLSV 610

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             NG+          I +    +        +    V  +   +   +L           
Sbjct: 611 SDNGHGIDAGTL-EHIFEPFYSTKGVGRGTGLGLAMVYGIVQSHAGCILCFSEAGKGTRF 669

Query: 210 SALLE 214
              L 
Sbjct: 670 DIYLP 674


>gi|82779179|ref|YP_405528.1| putative histidine kinase [Shigella dysenteriae Sd197]
 gi|309784320|ref|ZP_07678959.1| HAMP domain protein [Shigella dysenteriae 1617]
 gi|81243327|gb|ABB64037.1| putative histidine kinase [Shigella dysenteriae Sd197]
 gi|308927827|gb|EFP73295.1| HAMP domain protein [Shigella dysenteriae 1617]
          Length = 754

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q    ++     
Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 445

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQPPAWPAWIDVSQL 505

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+        +
Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616


>gi|51245778|ref|YP_065662.1| Ntr family two-component system sensory/regulatory protein
           [Desulfotalea psychrophila LSv54]
 gi|50876815|emb|CAG36655.1| related to two-component system sensory/regulatory protein (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 1018

 Score =  111 bits (276), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
              +   L  +  + A+  L   I HD  + +  I    EL  +    + V++       
Sbjct: 637 KSRLELQLQQAQKMEAIGTLAGGIAHDFNNILAVILGYAELAKDEAPANSVIEKDLDQVI 696

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +       L F R        +   + L +  +++   +     +Q         
Sbjct: 697 VGGNRAKELVKQILAFSRQEKVERLPMKVQVLLKETMRMLRPSLPSTIEIQTEIDPLCGF 756

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKV--------------TISVQDSKNENIFSLKI 153
           +  +     +I++N+   A+ ++ + G                  S   S +  +  +  
Sbjct: 757 ILADPTQVHQIIMNICTNANHAMDKSGGRLNIELKRISIDEENEHSSLRSGDYVVLVVAD 816

Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G                    I     +    +  +  E   R+    +  H    S  
Sbjct: 817 TGEGIAPNNIGKIFEPYFTTKEIGKGTGMGLATIHGIIREYGGRIDVVSVLGHGSAFSVY 876

Query: 213 LE 214
             
Sbjct: 877 FP 878


>gi|317492549|ref|ZP_07950976.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919299|gb|EFV40631.1| response regulator receiver domain-containing protein
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 952

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    ++  + + H++ +P+  I  +L+LL    + +E  +L+   S S+
Sbjct: 458 LQELANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPEETQRLLAAMSNSS 517

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
            + LK +     ++      + +          I                     ++   
Sbjct: 518 GLLLKIISDILDFSKIESEQLKIEPGTFEPRKVIPHIIGNYLPLVVRKRLVMYCFIEPEV 577

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++L NL   A       G + + V+       F ++  G    F +  
Sbjct: 578 PDSVAGDIMRIQQVLSNLLSNAIKFTDT-GCIILQVRVQDFYLEFRIRDTGLGIPFRDVM 636

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +       +       L       +  E       + +  + 
Sbjct: 637 KLFDPFFQVGTGVQRHFQGTGLGLAICEKLVSLMDGDIAVESEPGMGSIFTVRIP 691


>gi|319793166|ref|YP_004154806.1| pas/pac sensor signal transduction histidine kinase [Variovorax
           paradoxus EPS]
 gi|315595629|gb|ADU36695.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax
           paradoxus EPS]
          Length = 445

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 59/238 (24%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + ++I     +  +     + + H+I +P+  +   +E L     +       + L+   
Sbjct: 196 LTRDITALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQNLPLDADERMRYLSLMGQQ 255

Query: 57  SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           S      +  +                       +      G         +       +
Sbjct: 256 SHRMETLVNDLLTLSRLEGSASPSGNQWIRIRALLAQCEDEGRGLSGRLAPLGHRLSFTI 315

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFP 161
               E      E    + NL   A    P GG+V +S +        +++K  G      
Sbjct: 316 DAESEISGAPTELQSAMSNLLSNAIRYTPGGGEVAVSWRVLPDGRGEYAVKDTGPGIAAE 375

Query: 162 EKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +      +         +    V  +A  +   L  E         + +  
Sbjct: 376 HIPRLTERFYRIDRSRSRETGGTGLGLAIVKHIAQRHGAELRIESTVGKGSRFALVFP 433


>gi|311893920|dbj|BAJ26328.1| putative two-component hybrid sensor and regulator [Kitasatospora
           setae KM-6054]
          Length = 1247

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 56/237 (23%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
            +     L+ +D    +  S I H++ +P+  I    E L       + +V +       
Sbjct: 324 QRRRAEQLAELDRAKTVFFSNISHELRTPLTLIAGPAEDLRRRLADADPDVREDAETIHR 383

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVS 103
           +A+                          VD      ++  V    +             
Sbjct: 384 NALRLGRLVDTLLDFSRIEAGRMRARPRPVDLAAVTAELAAVFRPAVQRAGLTLEIDCPP 443

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +           K++ NL   A    P G       +        S++  G      E 
Sbjct: 444 LSAPVAVDPGLWEKVVFNLLGNALKFTPEGTVRVRVRERDGRAL-VSVEDTGIGVPAAEL 502

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ D           + +   I       L   +   +            +  L 
Sbjct: 503 P-RLFDRFHRVEDARARSHEGSGIGLALAKELVELHDGTITAASTAGSGTTFTVDLP 558


>gi|307261423|ref|ZP_07543096.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306868880|gb|EFN00684.1| hypothetical protein appser12_9870 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 586

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I     +L E  + ++  + ++  ++SA+              
Sbjct: 86  SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 145

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                       ++ I                 +   ++IL
Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
            NL   A    P GG + +SV+   N    FSLK  G      E+               
Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 265

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L            +  ++
Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 306


>gi|307247923|ref|ZP_07529957.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307250179|ref|ZP_07532137.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306855573|gb|EFM87742.1| hypothetical protein appser2_9100 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306857778|gb|EFM89876.1| hypothetical protein appser4_9650 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 586

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I     +L E  + ++  + ++  ++SA+              
Sbjct: 86  SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 145

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                       ++ I                 +   ++IL
Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
            NL   A    P GG + +SV+   N    FSLK  G      E+               
Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 265

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L            +  ++
Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 306


>gi|303251394|ref|ZP_07337571.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|302649748|gb|EFL79927.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
          Length = 616

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I     +L E  + ++  + ++  ++SA+              
Sbjct: 116 SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 175

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                       ++ I                 +   ++IL
Sbjct: 176 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 235

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
            NL   A    P GG + +SV+   N    FSLK  G      E+               
Sbjct: 236 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 295

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L            +  ++
Sbjct: 296 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 336


>gi|209966017|ref|YP_002298932.1| sensory box histidine kinase [Rhodospirillum centenum SW]
 gi|209959483|gb|ACJ00120.1| sensory box histidine kinase [Rhodospirillum centenum SW]
          Length = 843

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 16/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLS 56
           A+   F    ++ V  L   + HD  + + AI N+LEL            +  ++  R  
Sbjct: 466 AQERLFQAQKLETVGQLTGGVAHDFNNLLTAIVNNLELARRDPAGAAERLEGALKAARAG 525

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +      L F R+        D    L DI  ++   +     V V+       +  +  
Sbjct: 526 TELVRRLLAFARMQPLEPQPTDPGRLLHDILPLLRRAVGERVEVSVTAGRRLPPVLVDPV 585

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLARFPEKFTQIV 168
           ++   L  +A  +             +          + + ++   G     PE   ++ 
Sbjct: 586 QLENALLNLAVNARDAMPGGGRLEIRAGVELAEDGTPQVVLTVADTGTGM-TPEVAQRMF 644

Query: 169 DGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +        +    +     ++  ++  E       V      
Sbjct: 645 EPFFTTKPPGKGTGLGLASLYGFVRQSGGQVRVETAPGRGTVFHLSFP 692


>gi|167464857|ref|ZP_02329946.1| two-component sensor histidine kinase [Paenibacillus larvae subsp.
           larvae BRL-230010]
          Length = 582

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 58/233 (24%), Gaps = 31/233 (13%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + +   + + H++ +P+ A+    E L     ++  +    +Q+I   S      +  
Sbjct: 348 ERIRSEFVANVSHELKTPVAAVKGFAETLMAGALEDKEMARSFLQIIYDESDRLNRLIGD 407

Query: 67  --------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKIDLSRER 115
                    +        VD    + +  Q+++             V             
Sbjct: 408 ILELSKIESKRIPLQFSPVDVESIVENSIQMMKAEAEKKHITLESCVENELYIEADEDRL 467

Query: 116 AKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +IL+NL     +  P             ++            +   G      +   +I
Sbjct: 468 RQILINLLSNGISYTPEGGRVSIGVEFVPSLDDNPDNERMRIRISDTGIGIPEKDLP-RI 526

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +     +    V  L   +   +  E         +  L 
Sbjct: 527 FERFYRVDKARSRSSGGTGLGLSIVKHLTELHHGTISVESEAGKGTTFNIELP 579


>gi|165976354|ref|YP_001651947.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|303252978|ref|ZP_07339133.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|165876455|gb|ABY69503.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|302648169|gb|EFL78370.1| sensor histidine kinase [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
          Length = 616

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I     +L E  + ++  + ++  ++SA+              
Sbjct: 116 SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 175

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                       ++ I                 +   ++IL
Sbjct: 176 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 235

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
            NL   A    P GG + +SV+   N    FSLK  G      E+               
Sbjct: 236 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 295

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L            +  ++
Sbjct: 296 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 336


>gi|116073068|ref|ZP_01470330.1| adaptive-response sensory kinase [Synechococcus sp. RS9916]
 gi|116068373|gb|EAU74125.1| adaptive-response sensory kinase [Synechococcus sp. RS9916]
          Length = 397

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 69/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54
           + +     +  ++    L   + H++ +P+ A   +L+      I+          +L  
Sbjct: 142 LRQENETLIDRLEAQERLLRMVAHELRTPLTAATLALQSQQLGQIDHNRFQDVLKRRLEE 201

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           ++ +S  +                     +    I ++ + ++  D  VQ        + 
Sbjct: 202 IALLSKDLLEVGSTRWEAMFNPQRLNLATVAAEAILELEKQWLGRDVTVQTDIPTDLPKV 261

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A      GG+V++++   +      S+  +G      E+    
Sbjct: 262 YADQRRMRQVLLNLLENALKFTQDGGQVSLTMLHRTSQWLQVSVCDSGPGIPTQEQERIF 321

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      S      +       +   +  ++               + 
Sbjct: 322 LDRVRLPQTSSETSGFGVGLSVCRRIVEVHGGKIWVVSEPGEGACFFFTVP 372


>gi|73748783|ref|YP_308022.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
            CBDB1]
 gi|73660499|emb|CAI83106.1| sensor histidine kinase/response regulator [Dehalococcoides sp.
            CBDB1]
          Length = 1262

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 68/235 (28%), Gaps = 23/235 (9%)

Query: 2    AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
             +       S     L A+  + + I H+I +P+  +     +L E         + +Q+
Sbjct: 884  EEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFASILMEREDLPADVMDELQI 943

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGE 107
            I   S   +  +K M         V S + + ++               +  V   +  +
Sbjct: 944  INSGSQRVVEIVKRMLTFARQAKPVRSSVNITELIDSTLDLRSYVLKTANIEVVRHYEPD 1003

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTIS------VQDSKNENIFSLKINGNLARFP 161
               L+ +  +I   +  +   +     K          V+        S + NG      
Sbjct: 1004 LPLLTVDSGQIQQVILNLILNAEYSMKKAHEKGILTISVKKEGEWVRMSFRDNGLGM-SA 1062

Query: 162  EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++      +    +   +       +  E++  +  E I       +  L 
Sbjct: 1063 ETLGKLFQPFFTTKDPGEGTGLGLSLSHGIILEHEGTIRGESILGEGAEFTIELP 1117


>gi|186680570|ref|YP_001863766.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186463022|gb|ACC78823.1| multi-sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 768

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 69/231 (29%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+++  + + +   A + S   HD+  P+  + N ++LL+    E+         S + 
Sbjct: 518 LAQDLERSNAELKKFAYVAS---HDLQEPLNQVVNYVQLLEMRYSEELDEDAQEFISYAV 574

Query: 61  I--IRLKFMRLAFGYTGSVDSLIGLGDIE-----------QVIEDFIAVDKRVQVSWTGE 107
                ++ +         VD       +             + +        +       
Sbjct: 575 QGVSLMQTLIDDVLAYSKVDMQAIAFQMNDVETALMRGLGNLRQRINETGATITHDPLPT 634

Query: 108 KIDLSRERAKILLNLFMVAHA-SLPRGGKVTISVQDSKNENIFSLKINGNLARFP--EKF 164
            +  S +  ++  NL   A      +  ++ +  +  ++  +FS++ NG        ++ 
Sbjct: 635 VMADSTQLMQLFQNLIGNAIKFHSDQPPQIHVGAERIEDAWLFSVRDNGIGIDPKFSDRI 694

Query: 165 TQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I              +       +   ++ R+  E            + 
Sbjct: 695 FVIFQRLHTRDEYTGTGMGLAICKKIVECHRGRIWVESELGQGATFYFTIP 745


>gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1130

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 64/238 (26%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           +     L  +D L     +   H++ +P+  I    E + +        ++++ + +I +
Sbjct: 440 ERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIAESMMDGATGNISELQNKNLSMIVV 499

Query: 56  SSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
           S           +  +     S+   +    + +V E  +   + +      + I+    
Sbjct: 500 SGHRLANLVNDILDFSKLRHHSIKLKMSSVGMREVTEVVLTFSRIILKEKDVQLINAISS 559

Query: 111 -------LSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARF 160
                        +I+ NL   A      G            +  +   ++   G     
Sbjct: 560 DLPPVEADENRIQQIMHNLVGNAIKFTEVGVITISAELIDLKNNPKMAITVSDTGIGIPE 619

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +           DG+ E       +       L   +   +  +         +  L
Sbjct: 620 DKHEAIFASFEQGDGSTERRYGGTGLGLPITKQLVELHGGTISVKSNPGVGSEFTFTL 677


>gi|328953514|ref|YP_004370848.1| PAS/PAC sensor hybrid histidine kinase [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453838|gb|AEB09667.1| PAS/PAC sensor hybrid histidine kinase [Desulfobacca acetoxidans
           DSM 11109]
          Length = 838

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +     +  ++ + +L   I HD  + +  I  + +L    L         +Q I  +S 
Sbjct: 453 EARMREVQKLESLGVLAGGIAHDFNNLLMGIMGNADLAQLSLSPASPAIPYLQEITRASQ 512

Query: 59  SAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            A      M                 + +  +  + +V     A+               
Sbjct: 513 RAADLCNQMLAYSGKGRFLVRRYNLSEIVREMARMLEVSISKKAMLNYRLADALPAVEAD 572

Query: 112 SRERAKILLNLFMVAHASLPRGG-------------------KVTISVQDSKNENIFSLK 152
           + +  +I++NL + A  +L                                       + 
Sbjct: 573 ATQLRQIIMNLIINASEALNDQNGVITLSTGVMDCDRRYLSESYLDDNLAEGRYVFLKVS 632

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +G      E   +I D    +      +    V+ +   ++  +      D     + L
Sbjct: 633 DSGAGI-DEETRQRIFDPFFTTKFTGRGLGLAAVLGIVRGHRGAIRVGSEPDRGTTFTIL 691

Query: 213 LE 214
           L 
Sbjct: 692 LP 693


>gi|320353326|ref|YP_004194665.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfobulbus propionicus DSM 2032]
 gi|320121828|gb|ADW17374.1| signal transduction histidine kinase, nitrogen specific, NtrB
            [Desulfobulbus propionicus DSM 2032]
          Length = 1165

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 67/239 (28%), Gaps = 30/239 (12%)

Query: 5    ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQLIRLS 56
                   M+ +  L   I HD  + +G I    E+  E   +         ++++    +
Sbjct: 779  QLQQAQKMEAIGTLAGGIAHDFNNLLGVIIGYGEIAKEALPDHSTTARDLEKILEAGERA 838

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
            +      L F R A      ++ +  + +  +++   +     ++   +     +  +  
Sbjct: 839  ADLVKQILAFGRRANVEKIPLEPVHLVKEAVKLLRATLPSTITIRQQLSARTGTILADPT 898

Query: 116  --AKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKINGNL 157
               +I++NL   A  ++ +                   +           + ++   G  
Sbjct: 899  QIHQIVMNLCTNAFHAMEQTGGVLDITLAECERDVQDLLYHPQVRPGKFVVLTVADTGPG 958

Query: 158  ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I +    +        +    V  +  +    +  E            L 
Sbjct: 959  I-PPEIRDKIFEPYFTTKGVGKGTGLGLAIVHGIVADTGGFITCESEPGQGTAFHVFLP 1016


>gi|315640982|ref|ZP_07896073.1| sensor histidine kinase [Enterococcus italicus DSM 15952]
 gi|315483253|gb|EFU73758.1| sensor histidine kinase [Enterococcus italicus DSM 15952]
          Length = 464

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/222 (10%), Positives = 68/222 (30%), Gaps = 17/222 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
             + L   L + I H++ +P+  +  ++E + +    I  E +Q            +  +
Sbjct: 241 KQLGLRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNI 300

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAK 117
            +        D L         + + +  +   ++      +++  +            +
Sbjct: 301 EVINKIEAKYDHLNKTEFNIYKLIESVIENFASKIESKDLHVEIQGDNINISADKDKMNQ 360

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNV 172
           +++NL   A     + G +  S+  +K+  +  ++ NG           F +      + 
Sbjct: 361 VVINLLNNAIKFTQKEGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSR 420

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    I    V  +   +K  +  +            L 
Sbjct: 421 SRALGGQGIGLAIVKSVVEAHKGSITVKSKLGLGTKFVIKLP 462


>gi|315169595|gb|EFU13612.1| PAS domain S-box [Enterococcus faecalis TX1342]
          Length = 591

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGPYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|254796403|ref|YP_003081239.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois]
 gi|254589640|gb|ACT69002.1| Sensor histidine kinase PleC [Neorickettsia risticii str. Illinois]
          Length = 447

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 21/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60
           AK     +SS    +   + + H++ +P+ AI    +L+     +  E  +       S 
Sbjct: 211 AKESIEEISSQK--SQFLANVSHELKTPLNAIIGFSDLIRTAEVLGTEHREYANDIYYSG 268

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108
                            +          D +       ++        K V+  ++ +  
Sbjct: 269 NHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRMTTTKRKKIKIVKSFFSNKIL 328

Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +   +++LN+   +       G + IS+    +E    +  NG      +    +
Sbjct: 329 IKSDHKRVKQVILNILSNSIKFTNEDGLIKISIIRLPSEIEIEISDNGVGIPEKDIAKAL 388

Query: 168 VDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         D   I       L          E  +    V+   L 
Sbjct: 389 SVFGQSNTELSRKYDGAGIGLPLSKKLVELMGGAFEIESKEGSGTVVKIRLP 440


>gi|229086573|ref|ZP_04218742.1| hypothetical protein bcere0022_31540 [Bacillus cereus Rock3-44]
 gi|228696655|gb|EEL49471.1| hypothetical protein bcere0022_31540 [Bacillus cereus Rock3-44]
          Length = 424

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 65/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDMKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S     I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISENLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++     +  I  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNIVKNGIEAIQGNKGYLKVTAIQKDHAIIVRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +            L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIITLP 418


>gi|206602092|gb|EDZ38574.1| Putative multi-sensor signal transduction histidine kinase
           [Leptospirillum sp. Group II '5-way CG']
          Length = 453

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 50/220 (22%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKF--------- 66
             + + H+I +P+ +I    E L + G        +   +    A               
Sbjct: 221 FVANVSHEIRTPLTSIRGFAEALHDGGINDPKTAREFSGIILSHAERLGNIVSDLLHLSE 280

Query: 67  ------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 +      + S                            T        +   +L 
Sbjct: 281 LETGKAIMRYGSVSLSRQIAHIRDVYADHARKKGIRFIVQLPEETLTYETDEGKMDLVLG 340

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P GG+V        +  +F ++ +G      E   +I +           
Sbjct: 341 NLVDNALKYTPEGGEVFFGGWREGDAIVFEVRDSGVGIPRTEV-DRIFERFYRVDRARSR 399

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V  +    +  +               + 
Sbjct: 400 EMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFLVRVP 439


>gi|218438404|ref|YP_002376733.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
 gi|218171132|gb|ACK69865.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7424]
          Length = 404

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 61/243 (25%), Gaps = 29/243 (11%)

Query: 2   AKNICFNLSSM------DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQL 52
            +     + +        L +   + + H++ +PI AI    ++L       +      L
Sbjct: 158 RQRRQIEIQNEQLQETSRLKSQFLATMSHELRTPINAIMGFSQMLLRRYPEPLTPAQTDL 217

Query: 53  IRLSSMSAIIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           ++    ++   L  +                          ++   +  + +     +  
Sbjct: 218 VQRIFDNSKNLLTLLNDVLDFSKIEAGKLILHPHEFDLKQLVVLTTEELRSLAISKNLSL 277

Query: 99  RVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           ++QV     KI   +    +IL+NL   A      GG      + + +    +++  G  
Sbjct: 278 QIQVEVENPKIINDQSCLRRILVNLLSNAIKFTETGGVSVTVWELNPDLMAIAVEDTGIG 337

Query: 158 ARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                                       +       L      ++          +    
Sbjct: 338 IAQEHLEHIFEVFRQADQTLTRKYGGTGLGLAISESLIKMMHGKITVTSELGKGSIFQIE 397

Query: 213 LEK 215
             +
Sbjct: 398 FPR 400


>gi|168784716|ref|ZP_02809723.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC869]
 gi|261225212|ref|ZP_05939493.1| putative histidine kinase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255536|ref|ZP_05948069.1| putative histidine kinase [Escherichia coli O157:H7 str. FRIK966]
 gi|189374926|gb|EDU93342.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC869]
          Length = 756

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 71/232 (30%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q    ++     
Sbjct: 389 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 448

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 449 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 508

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G         +
Sbjct: 509 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGCGM-SQAVKS 567

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 568 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 619


>gi|167723946|ref|ZP_02407182.1| two-component sensor kinase protein [Burkholderia pseudomallei
           DM98]
          Length = 723

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHPRDDAWLLRVRDNGIGI-DPQYFERI 657

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709


>gi|149201950|ref|ZP_01878924.1| periplasmic sensor signal transduction histidine kinase
           [Roseovarius sp. TM1035]
 gi|149144998|gb|EDM33027.1| periplasmic sensor signal transduction histidine kinase
           [Roseovarius sp. TM1035]
          Length = 644

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLI 53
           +       + S  L ++  + + + H+I +P   I  +L+++ +            + LI
Sbjct: 409 LETTYQQLVMSEKLASIGEITAGVAHEINNPAAVIQGNLDVIRQTLGAHTEPVITELNLI 468

Query: 54  RLSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VS 103
                     +  +           +  +VD    L D   +++  +             
Sbjct: 469 DRQIGRITAIVGKLLQFARPGEFGTFEENVDLASVLRDCLVLVDHVVTRSGHTVTLNAHP 528

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKINGNLAR 159
            T        E  ++++NL   A  ++   G +T++ +     +       +   G    
Sbjct: 529 DTPPVRINPGELQQVIINLVTNAAQAMKTPGHLTLTTRPEDRGSCPGAALLVADTGPGIP 588

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +              +   +       L  +   R+      +     +  + 
Sbjct: 589 KDKLPLVFDPFFTTKQGEGTGLGLSVSQTLIQQAGGRITVRNRVEGGAEFTVWMP 643


>gi|186471316|ref|YP_001862634.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
 gi|184197625|gb|ACC75588.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           phymatum STM815]
          Length = 720

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 55/235 (23%), Gaps = 25/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
           A+ +    +         + + H++ +P+  I    ++L  +  +       + +   S 
Sbjct: 254 ARRMAEAANRAK--GEFLANLSHELRTPLNGILGYAQILGRDDSLSLRQRDGVAVIQQSG 311

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SW 104
              L                +R+          +  + +I  V  +   +     V    
Sbjct: 312 EHLLTLIDETLDFAKVEAGKLRIEICDVPLAGLVDTIREIIGVKAEQRRLAFACSVAADA 371

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++LLNL   A     RG       +       F +   G      E  
Sbjct: 372 PCGVRADEHRLRQVLLNLLSNAVKFTDRGEVRLFIRRGESGAVRFEVHDTGIGI-CAEYH 430

Query: 165 TQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I     +            +               +  + +     V    L 
Sbjct: 431 ETIFMPFEQAGGAERRAGGTGLGLAISRQFVRAMGGEVNVDSVVGRGSVFWFELP 485


>gi|116333654|ref|YP_795181.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116099001|gb|ABJ64150.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
          Length = 536

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 62/215 (28%), Gaps = 23/215 (10%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVM------------QLIRLSSMSAIIRLKFMRL 69
           + H++ +P+  I   +E+LD  G ED  +            + ++      +   +  ++
Sbjct: 281 VSHELRTPVAIIQGHMEMLDRWGKEDPEVLDESIKASLQETKRMKSLVQEMLDLQRAEQI 340

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----IDLSRERAKILLNLFMV 125
              Y   V  +  + +        I  D    +     +            +IL+ L   
Sbjct: 341 EVNYPNEVTDVSEVVEQVFDNFKMIHPDYVFILDDDVHQPLQAQIYRNHLEQILIILMDN 400

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A        +V ++ +        +++  G      E   ++ +           T   +
Sbjct: 401 AVKYSQTRKEVHLTYESDLRNLEVAVQDFGEGI-SQENRKRVFNRFYRVDKARSRTKGGN 459

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L      ++  E    H  V    L 
Sbjct: 460 GLGLAIAKRLIEAYHGQITIESALGHGSVFRISLP 494


>gi|83594821|ref|YP_428573.1| Cache sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
 gi|83577735|gb|ABC24286.1| Cache sensor hybrid histidine kinase [Rhodospirillum rubrum ATCC
           11170]
          Length = 1041

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 61/220 (27%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL-------KFMRLAFG 72
           + + H+I +P+ A+     LL +  +E   +   R    S    L        F R+  G
Sbjct: 510 ATMSHEIRTPMNAVIGMTGLLLDGPLEPRQIDYARTIQRSGEHLLGLINDILDFSRIDTG 569

Query: 73  YTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
               VD    L    Q +             +V   +  +        S+   +IL+NL 
Sbjct: 570 RLVLVDRDFSLSHEVQAVVSLCGVAASAKRLSVRIDLDRALAPGYRGDSQRLRQILVNLV 629

Query: 124 MVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174
             A     +G          +++  +     +   G                  DG+   
Sbjct: 630 GNAVKFTDKGMVTVQGDVLKIENDIHWLRLRVVDTGCGIPRERFNDLFAAFQQLDGSATR 689

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T     +       LA      +          V S ++ 
Sbjct: 690 THGGTGLGLAISRKLARLMGGDITVSSTPGEGSVFSVVVP 729


>gi|33865287|ref|NP_896846.1| adaptive-response sensory kinase [Synechococcus sp. WH 8102]
 gi|54036403|sp|Q7U871|SASA_SYNPX RecName: Full=Adaptive-response sensory-kinase sasA
 gi|33632456|emb|CAE07268.1| two-component sensor histidine kinase [Synechococcus sp. WH 8102]
          Length = 383

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 67/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54
           + +     +  +     L   + H++ +P+ A   +L+      I+          +L  
Sbjct: 132 LRQENETLIDRIHAQERLLRMVAHELRTPLTAAALALQSQRLGQIDMTRFQDVITRRLEE 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           + ++S  +                     +    I ++ + ++  +  ++        + 
Sbjct: 192 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIRTDIPSDLPKV 251

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A      GG +T+++   +      S+  +G      E+    
Sbjct: 252 FADQRRMRQVLLNLLENALKYTGNGGHITLTMLHRTSQRVEVSVCDSGPGIPTEEQQRIF 311

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++             +       +   +  R+            +  + 
Sbjct: 312 LDRVRLPQTSDRTTGFGVGLSVCRRIVEVHGGRIWVVSEPGEGACFTFTVP 362


>gi|307154472|ref|YP_003889856.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
 gi|306984700|gb|ADN16581.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
          Length = 373

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 61/217 (28%), Gaps = 22/217 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMR------ 68
           L S + H++ +P+  +   LE L +       +  ++L++  +         ++      
Sbjct: 157 LISDLTHELRTPLTVVRGYLEQLSDYSIEPSTELYLKLVK-ETRRLERLTYDLQELSKAE 215

Query: 69  --LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNL 122
                     +     L  + +   D +  +  V      +     +       +IL+NL
Sbjct: 216 AGYLVINIQPLYLYTLLQSLIEKFSDQLMDEGPVLALDCPADLPPVLADIDRTEQILVNL 275

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--ID 177
              A     +G  +  +  +       ++   G      +    F +    +   +    
Sbjct: 276 LGNALRYTEKGNILLKAWLEKDR-IWIAVIDTGIGISQEDLPFVFERFWRADRSRSRYSG 334

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I    V  L      ++  E       +    L 
Sbjct: 335 GSGIGLAIVRRLVELQNGQIEVESELGKGTIFRFCLP 371


>gi|228915803|ref|ZP_04079380.1| hypothetical protein bthur0012_30210 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843845|gb|EEM88917.1| hypothetical protein bthur0012_30210 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 436

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|228934471|ref|ZP_04097306.1| hypothetical protein bthur0009_29270 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228825108|gb|EEM70905.1| hypothetical protein bthur0009_29270 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 436

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|229042245|ref|ZP_04189998.1| hypothetical protein bcere0027_3160 [Bacillus cereus AH676]
 gi|229108016|ref|ZP_04237642.1| hypothetical protein bcere0018_3080 [Bacillus cereus Rock1-15]
 gi|229143136|ref|ZP_04271568.1| hypothetical protein bcere0012_3090 [Bacillus cereus BDRD-ST24]
 gi|228640217|gb|EEK96615.1| hypothetical protein bcere0012_3090 [Bacillus cereus BDRD-ST24]
 gi|228675416|gb|EEL30634.1| hypothetical protein bcere0018_3080 [Bacillus cereus Rock1-15]
 gi|228727104|gb|EEL78308.1| hypothetical protein bcere0027_3160 [Bacillus cereus AH676]
          Length = 369

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 367


>gi|269128961|ref|YP_003302331.1| multi-sensor signal transduction histidine kinase [Thermomonospora
           curvata DSM 43183]
 gi|268313919|gb|ACZ00294.1| multi-sensor signal transduction histidine kinase [Thermomonospora
           curvata DSM 43183]
          Length = 1383

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 58/238 (24%), Gaps = 29/238 (12%)

Query: 5   ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
                 + +L  L        + I H+  +P+  I   LE L            E +++I
Sbjct: 331 RAQQRRAEELAELNRAKTVFFTDISHEFRTPLTLIVGPLEELRSRLGPADQWVRENLEII 390

Query: 54  RLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101
           R S++     +  +                  D  +   D+  V    +           
Sbjct: 391 RHSALRMTRLVDTLLDFARIEAGRMEARYQPTDLAVFTADLAGVFRAAVDKAGLRLEVDC 450

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          KI+LNL   A      G        +        +   G      
Sbjct: 451 PPLPEPVYVDRGMWEKIVLNLLSNALKFTFEGSITVRLRAEDGQAV-LRVSDTGVGMSEQ 509

Query: 162 E---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +          +I+   I    V  L H +   +  +         +  L 
Sbjct: 510 DLPRVFERFQRVKAAQTRSIEGSGIGLALVRELVHLHGGTIGVDSTLGKGTTFTIRLP 567


>gi|255693529|ref|ZP_05417204.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620730|gb|EEX43601.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 480

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 72/238 (30%), Gaps = 26/238 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  +L + 
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDSRVGSLNDEQQELAQS 301

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +    +G +     +    ++IE  I  ++     +  +    
Sbjct: 302 IQDNSDRLLSITSELLNMTQVESGKLQLKPRVTKPIELIEYAIKANRVQAEKFNIQVEVQ 361

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLA 158
             E               +L NL   A       G++ I   +   N     ++  G   
Sbjct: 362 YPEEKMGKLFVDSEKIAWVLTNLVSNAIRYSAENGRIIIGARKTKDNWIEMFVRDFGKGI 421

Query: 159 RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +          + +    +           +   L  E         +  L+
Sbjct: 422 DPRYHQSIFEHYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESEIGKGSCFTLRLK 479


>gi|225619216|ref|YP_002720442.1| sensory box histidine kinase [Brachyspira hyodysenteriae WA1]
 gi|225214035|gb|ACN82769.1| sensory box histidine kinase [Brachyspira hyodysenteriae WA1]
          Length = 393

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 72/239 (30%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQ 51
           ++      +  L +L  L + + H+I +P+G+I   ++L+D         E     +  +
Sbjct: 143 ESAQKLKRAEQLASLTTLAAGVAHEIKNPLGSISIYVQLIDKIIKKNMDNECQCYKDFKE 202

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG--------LGDIEQVIEDFIAVDKRVQVS 103
              +         + +         ++  I         L  I  +  +    +  + + 
Sbjct: 203 YSDIIKEEISRLEETINSFLFSVRKLELNIEDVNINELILSTIAFLKYEIEKNNVNIDIK 262

Query: 104 WTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKING 155
           +  + + L  +     + L+N+   A  ++                   N  + S+K  G
Sbjct: 263 FDKDNLILKLDEKYIKQSLINIIQNAIDAMSDNADDKKKEIFIKLKTVDNYAVISIKDTG 322

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     E   +I +    +      +    V+ +   +   +  E            L 
Sbjct: 323 SGI-KEESLGKIFEPYFTTKRHGTGLGLTNVVRIVEAHNGNVTIESEYGKGSEFIIKLP 380


>gi|197118536|ref|YP_002138963.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087896|gb|ACH39167.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 753

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 66/239 (27%), Gaps = 31/239 (12%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRL 55
              L S  + A+  L   + HD  + +G I  + EL                 ++     
Sbjct: 376 EQLLQSQKMEAVGKLAGGVAHDFNNMLGVIIGNAELAMMEVEPSGKLHERLQGILDAANR 435

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           S+      L F R        +D    +  + +++   I  D  V  S   +   +  + 
Sbjct: 436 SADITRQLLAFSRQQHAKPKVLDLNEVIAKMLKMLHRLIGEDIEVVWSPGRDIWKVKLDP 495

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISV---------------QDSKNENIFSLKINGNL 157
               +I+ NL + A  ++   G++ I                        +  +  +G  
Sbjct: 496 TQLDQIMANLCVNARDAIAGIGRMDIRTENVELSPEQKNPAVEMPQGRCVMLEVSDSGCG 555

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I +    +        +    V  +  +N   +  +              
Sbjct: 556 M-RREVMERIFEPFYTTKEVGRGTGLGLATVFGIVKQNDGHIEVQSEPGAGTSFRIYFP 613


>gi|116251585|ref|YP_767423.1| two component sensor histidine kinase transcriptional regulatory
           protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115256233|emb|CAK07314.1| putative two component sensor histidine kinase transcriptional
           regulatory protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 564

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           +A+    N    +L     +   H+  +P+  I  + + L       E     + +  IR
Sbjct: 322 LAQERNIN----ELQRQFVAMASHEFRTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIR 377

Query: 55  LSSMSAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------ 107
            S    +  ++  +      TG +D       +  +I+        +  S +        
Sbjct: 378 ASVTRIVDLMESILSAGRLDTGKIDINYDACALRSLIKTCCERQSTIAKSHSFVLDIDGL 437

Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                   R  A++  NL   A    P   +V ++          S+  +G      +  
Sbjct: 438 PESIDADPRTLAQVFTNLLSNAVKYAPGTSEVRVTAWAETGNVKVSISDDGVGIDAEDVP 497

Query: 164 --FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +       + I    I    V  +   +   +            +  L 
Sbjct: 498 RLFQRYFRARTSTGIAGTGIGLNLVKQIIELHNGSIEVRSARGCGSTFTVTLP 550


>gi|42524257|ref|NP_969637.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576465|emb|CAE80630.1| sensor histidine kinase/response regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 878

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 25/235 (10%)

Query: 4   NICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++   L  + +  +   + + H+I +P+  I    +LL+E  + ++    + +S  +   
Sbjct: 484 DLNVQLKKASETKSEFLANMSHEIRTPLNVIVGMSDLLEESPLNEDQKHYVDISKKAGHN 543

Query: 63  RLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            L  +      +                   +  + ++ ++      ++  V +S     
Sbjct: 544 LLSIINDILDISKIEAGLLTLEKTEVDLHSLVNDITEMFELKAREKNLELSVYLSEDTHS 603

Query: 109 IDL--SRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           I +       ++L NL   +           +V  +  + +   IF +   G      + 
Sbjct: 604 IFMGDPTRIRQVLSNLISNSLKFTTDGSIRVEVMKNQTEMEGNLIFHVSDTGIGIPRDKI 663

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                                 +       L       +  E         S  L
Sbjct: 664 PQLFQPFTQADSTITRKFGGTGLGLSISKRLVKMMNGDITVESELHRGSRFSFSL 718


>gi|148544451|ref|YP_001271821.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri DSM 20016]
 gi|184153815|ref|YP_001842156.1| two-component system histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|227363121|ref|ZP_03847256.1| sensor histidine kinase [Lactobacillus reuteri MM2-3]
 gi|325682773|ref|ZP_08162289.1| sensor histidine kinase [Lactobacillus reuteri MM4-1A]
 gi|148531485|gb|ABQ83484.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri DSM 20016]
 gi|183225159|dbj|BAG25676.1| two-component system histidine kinase [Lactobacillus reuteri JCM
           1112]
 gi|227071839|gb|EEI10127.1| sensor histidine kinase [Lactobacillus reuteri MM2-3]
 gi|324977123|gb|EGC14074.1| sensor histidine kinase [Lactobacillus reuteri MM4-1A]
          Length = 491

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50
           M   +   +   +D  +   S + H++ +P+  I   LE+L   G +D  +         
Sbjct: 246 MFNEMLDRMQRYIDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPKVLDDSIKATL 305

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105
              + ++      +   +  ++   +      +  +          +  D   ++     
Sbjct: 306 IETRRMKNLVQEMLDLSRAEQVEINFRNQHTIVNDVVHQVYNNFKMLYPDFTFRLDDDLK 365

Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                        ++L+ L   A        K    +           ++  G     PE
Sbjct: 366 EPIMVDIYRDHLEQVLVILCDNAVKYSTDDHKEIHIILSRGMNTVEIGIQDFGEGI-SPE 424

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ D               + +       L       +  E       +   +L 
Sbjct: 425 NVKRVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSVGAGSLFRIILP 482


>gi|114048722|ref|YP_739272.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
 gi|113890164|gb|ABI44215.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-7]
          Length = 1118

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 57/214 (26%), Gaps = 21/214 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------------ 69
           + H+I +P+ AI    ++L E  +++E  + +   + SA   +  +              
Sbjct: 550 MSHEIRTPMNAIIGFSDILLESVLDNEQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKL 609

Query: 70  --AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMV 125
                     D +  +     +      +   V ++ +     I       ++L+NL   
Sbjct: 610 ELENRVFCLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGN 669

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHD 180
           A      G         + N   F +   G      +           D ++        
Sbjct: 670 AVKFTCEGKVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTG 729

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L      +L  E            + 
Sbjct: 730 LGTTISKQLVELMGGQLEAESTLGQGSTFRFTIP 763


>gi|329901629|ref|ZP_08272868.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549058|gb|EGF33662.1| sensor histidine kinase, putative [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 762

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 64/234 (27%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      ++    ++  S + H+I +P+  I     LL E  +  E  +  R+   SA 
Sbjct: 376 AKTCAEQANAAK--SVFLSTMSHEIRTPMNGIIGMTGLLLETPLNTEQREFARIIETSAD 433

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------------IEDFIAVDKRVQVSWT 105
             L  +     ++      + +  +                    +  +A++  +  +  
Sbjct: 434 ALLTVINDILDFSRIEAGKLMVESVAFALPATVAGCIDVIAGKACDKGLALNCTIDPALP 493

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---- 161
              +  +    +ILLNL   A      G               F +  +G          
Sbjct: 494 VFVMGDAGRLRQILLNLLGNAIKFTATGKVALHVTPVLAGAVRFVVADSGIGIDQKNAAE 553

Query: 162 -EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +DG++        +       L       +  E +          L 
Sbjct: 554 LFIPFHQIDGSITRKYGGTGLGLSITKRLVELMGGTIGFESVPGQGATFWVELP 607


>gi|320102737|ref|YP_004178328.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
 gi|319750019|gb|ADV61779.1| integral membrane sensor signal transduction histidine kinase
           [Isosphaera pallida ATCC 43644]
          Length = 583

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELL----------------DEV 43
            +     + S  L     L + + H+I +P+ +I    E L                +E 
Sbjct: 308 QERSRQLIRSERLAGVGFLAAGVAHEINNPLASIAFCAEALERRLISPNRPPSSSGGEEG 367

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAV 96
               + +++I+  +       + +      +            +  + ++ + +  +   
Sbjct: 368 DAVRDYLRMIQEEAFRCKRITEKLLDFSRTSELRRAPTELNALVTDVVEMVRHLGKYRGK 427

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
              V+ +     +  ++E  ++ LNL + A  S+  GG + I+++ ++         NG 
Sbjct: 428 SIEVKSTEAVYALADAQEIKQVALNLVVNALDSVDPGGWLVITLRYAEGMAEMEFVDNGK 487

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALL 213
               PE    I +    +        +       +  ++   +  E    D        L
Sbjct: 488 GM-TPEVLENIFEPFFTTRPVGKGTGLGLSITHRIISQHDGLIFAESDGPDRGARFVVRL 546

Query: 214 E 214
            
Sbjct: 547 P 547


>gi|315920858|ref|ZP_07917098.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
 gi|313694733|gb|EFS31568.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D2]
          Length = 1352

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 817  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  +     E    
Sbjct: 875  ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 934

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V   K+  I  +K  G      E         
Sbjct: 935  QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 994

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++         I       +   +   +  E            L+
Sbjct: 995  QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043


>gi|331664824|ref|ZP_08365729.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
 gi|331058072|gb|EGI30054.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA143]
          Length = 778

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTTEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|301167603|emb|CBW27186.1| two-component sensor kinase [Bacteriovorax marinus SJ]
          Length = 615

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 72/231 (31%), Gaps = 24/231 (10%)

Query: 8   NLSSMDLVALL----CSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS 57
           N+S   L   +     + + H++ +P+ A+   +++L       E     E +  I  +S
Sbjct: 383 NISHKKLAQQMREDFVTNVSHEVRTPLTAMKGYVQILLGMKELTENPTVKESLSKIEHNS 442

Query: 58  MSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               I  + +                     +     +    +  +   ++       ++
Sbjct: 443 NRLAILFQEILNLSMIESRHKLDLVKSSTQDITQNVLMNLKQVHKNSNRKIHCDYSAKEV 502

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165
             +     ++L NL   ++    + G+  I  + +++     ++ NG           F 
Sbjct: 503 LVDSSLIEQVLTNLIDNSYKYANQDGESFIKWEQNESSFTLLVEDNGPGIEAIHQKRIFE 562

Query: 166 QIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +     ++    +    V  +  ++K  +     D   V    ++ 
Sbjct: 563 RFYRVDSSRSRSLGGTGLGLSIVKHIVQKHKGTISVYSNDLGGVSFKIIIP 613


>gi|284051659|ref|ZP_06381869.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 1081

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           + +     + +  L     + + H++ +P+ AI    E + E         + + +Q I 
Sbjct: 687 LRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQKQALQTIE 746

Query: 55  LSSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWT 105
            S+   +  +     +         +D                + +        + V   
Sbjct: 747 RSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGISINVQIP 806

Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKING 155
               DL  +     ++L+NL   A    P  GK           +   K+   F++   G
Sbjct: 807 QALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRFAVIDTG 866

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 E+ +++               +   +    V  +   +   +            
Sbjct: 867 IGIN-EEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVGSGSQF 925

Query: 210 SALLE 214
              + 
Sbjct: 926 IFEIP 930


>gi|262405544|ref|ZP_06082094.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|294644578|ref|ZP_06722332.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|294809610|ref|ZP_06768303.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|262356419|gb|EEZ05509.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_1_22]
 gi|292640131|gb|EFF58395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CC 2a]
 gi|294443222|gb|EFG11996.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1352

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 817  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  +     E    
Sbjct: 875  ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 934

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V   K+  I  +K  G      E         
Sbjct: 935  QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 994

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++         I       +   +   +  E            L+
Sbjct: 995  QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043


>gi|260172565|ref|ZP_05758977.1| two-component system sensor histidine kinase/response regulator,
            hybrid ('one-component system') [Bacteroides sp. D2]
          Length = 1324

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 789  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 846

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  +     E    
Sbjct: 847  ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 906

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V   K+  I  +K  G      E         
Sbjct: 907  QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 966

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++         I       +   +   +  E            L+
Sbjct: 967  QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1015


>gi|237720524|ref|ZP_04551005.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|293371540|ref|ZP_06617958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298480439|ref|ZP_06998636.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|299146986|ref|ZP_07040053.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
 gi|229450275|gb|EEO56066.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|292633488|gb|EFF52053.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|298273260|gb|EFI14824.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. D22]
 gi|298514871|gb|EFI38753.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 3_1_23]
          Length = 1352

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 817  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  +     E    
Sbjct: 875  ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 934

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V   K+  I  +K  G      E         
Sbjct: 935  QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 994

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++         I       +   +   +  E            L+
Sbjct: 995  QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043


>gi|237716769|ref|ZP_04547250.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|229442752|gb|EEO48543.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
          Length = 1344

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 809  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 866

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  +     E    
Sbjct: 867  ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 926

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V   K+  I  +K  G      E         
Sbjct: 927  QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 986

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++         I       +   +   +  E            L+
Sbjct: 987  QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1035


>gi|160884022|ref|ZP_02065025.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483]
 gi|156110752|gb|EDO12497.1| hypothetical protein BACOVA_01996 [Bacteroides ovatus ATCC 8483]
          Length = 1352

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 65/229 (28%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 817  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 874

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  +     E    
Sbjct: 875  ITELLDFRKQEQGHMKIKVSQHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 934

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V   K+  I  +K  G      E         
Sbjct: 935  QKQMQKVINNLLSNAVKHTKAEDTISINVSQEKDHVIIEIKDTGTGIAAAEIDKIFDRFY 994

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++         I       +   +   +  E            L+
Sbjct: 995  QTEHLNSLNTGAGTGIGLALTKGIVELHHGTIRVESEPGKGSSFIITLK 1043


>gi|153932658|ref|YP_001382669.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153935782|ref|YP_001386220.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|152928702|gb|ABS34202.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152931696|gb|ABS37195.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 472

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 232 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 291

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 292 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDLK 351

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + R++  +++LN+   A    P  G++ +      +    S+K +G      +  
Sbjct: 352 HINIMIDRDKISQVILNIISNAIKYTPDKGEIFVRCFIKSDNVYISIKDSGIGISDEDKD 411

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 412 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 466


>gi|148378339|ref|YP_001252880.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
 gi|148287823|emb|CAL81889.1| two-component sensor histidine kinase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 615

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            KNI     S     L+    S I H++ +P+  I  +++LLD      +   +D+ ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLDFYEKDVDYEKQDKYLKL 405

Query: 53  IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103
           I+ +    +  +  +         Y         +          V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLRLNLVNYNIVSLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      A      GG + ++++DS+      +K  G     
Sbjct: 466 TEMEERVIAVDTDKIERIILNLLSNAIKFTNPGGNIFVNIKDSEENVYVHIKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +  ++               L 
Sbjct: 526 DKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFVEMHNGKVTINSELGKGTEFIIKLP 584


>gi|148378267|ref|YP_001252808.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|148287751|emb|CAL81817.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 465

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 225 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 284

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 285 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDLK 344

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + R++  +++LN+   A    P  G++ +      +    S+K +G      +  
Sbjct: 345 HINIMIDRDKISQVILNIISNAIKYTPDKGEIFVRCFIKSDNVYISIKDSGIGISDEDKD 404

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 405 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 459


>gi|124515848|gb|EAY57357.1| putative multi-sensor signal transduction histidine kinase
           [Leptospirillum rubarum]
          Length = 454

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 50/220 (22%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIRLKFM-------- 67
             + + H+I +P+ +I    E L + G        +   +    A      +        
Sbjct: 222 FVANVSHEIRTPLTSIRGFAEALHDGGINDPKTAREFSGIILSHAERLGNIVSDLLHLSE 281

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                        + S                            T        +   +L 
Sbjct: 282 LETGKAVMRYGSVSLSRQIAHIRDVYADHARKKGIRFTVQLPEETLTYETDEGKMDLVLG 341

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P GG+V        +  +F ++ +G      E   +I +           
Sbjct: 342 NLVDNALKYTPEGGEVFFGGWKEGDAIVFEVRDSGVGIPRTEV-DRIFERFYRVDRARSR 400

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V  +    +  +               + 
Sbjct: 401 EMGGTGLGLSIVRHILEILQGTVRVTSSPGQGSTFFVRVP 440


>gi|29833283|ref|NP_827917.1| two-component system sensor kinase [Streptomyces avermitilis
           MA-4680]
 gi|29610405|dbj|BAC74452.1| putative two-component system sensor kinase [Streptomyces
           avermitilis MA-4680]
          Length = 387

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 52/240 (21%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 140 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKKLMLETVDAD 199

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G   Q          R  +      
Sbjct: 200 ANRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQPADRFLLRIEQPL 259

Query: 109 IDLSRERA---KILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKIN 154
             L  +     ++L NL   A                   + T     +      ++   
Sbjct: 260 PALWADPDKIDQVLSNLLENAVRHGEGTVTIDVTPSASPRERTDDEGTAHAATSVTVSDE 319

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G                  S      +  Y V  +   +   +               L 
Sbjct: 320 GPGIPEESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGGITVGRAPGGGAEFRFTLP 379


>gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
 gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC 29413]
          Length = 1431

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 57/217 (26%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
            + + H++ SP+  I     LL    +++   +               +            
Sbjct: 1068 AVLSHELRSPLNPILGWSRLLQNGKLDEAKAKQAVNIIERNAKLQVELIEDLLDISRILQ 1127

Query: 71   ------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKILLNLF 123
                           + G  +  ++  +  ++   V +          S    +++ NL 
Sbjct: 1128 GKLSLTSSPINLASVIKGAIETVRLAAEANSIRIEVNLDGEIGLVSGDSTRLQQVMWNLL 1187

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178
              A    P GG V I ++   N+   S+   G             + +  D         
Sbjct: 1188 SNAVKFTPTGGLVEIRLEQVGNQAQISVSDTGKGISPDFIPYVFDYFRQADSATTRKFGG 1247

Query: 179  HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              +    V  L   +   +  E   +      +  L 
Sbjct: 1248 LGLGLAIVRHLVELHGGTIHAESQGEGMGATFTLKLP 1284



 Score =  104 bits (260), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 61/236 (25%), Gaps = 26/236 (11%)

Query: 5   ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
                 +  L  L        S + H+  +P+  + + LE LL    +  E  Q + L  
Sbjct: 315 EEERKRAEKLAELDRAKTTFFSNVSHEFRTPLTLMLSPLEELLTADDLSQEQRQEMTLIH 374

Query: 58  MSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + +                           D      ++  +    I            
Sbjct: 375 RNGLRLLKLVNTLLDFSRIEAGRVQAVYEPTDLSTFTAELASIFRSAIEQAGLQFSVTCE 434

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEK 163
              +L     ++   + +   ++  +           +  +++   ++   G      E 
Sbjct: 435 PLPELVYVDRQMWEKIILNLLSNAFKFTFSGAIALTLRQVQHQVEITVTDTGIGIPQAEL 494

Query: 164 ---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +     G    T +   I    V  L   +  ++  + ++      +  + 
Sbjct: 495 PHLFERFHRVEGARGRTQEGSGIGLALVQELVRLHGGQVQVDSLEGLGTTFTITVP 550


>gi|152974826|ref|YP_001374343.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023578|gb|ABS21348.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 459

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRL------- 69
           + + H++ +P+  I    E + +    G +++ MQLI   +      +  +         
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGKQEKFMQLIHKEAGRMQRLVHDLLDLAQLEGE 303

Query: 70  ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  + +  +       V+  +++      +       ++L N+   
Sbjct: 304 HFPLQKQPIVFAQLIEDVVETYEWKCIEKQVEISMELDPDIIVMIDEDRMQQVLHNILDN 363

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A       GK+T+ +Q  K +    +   G      E   Q+ +                
Sbjct: 364 AIRYTNEKGKITVQLQKLKKDCQLKIMDTGIGI-EREHVEQLGERFYRVDKARSRQHGGT 422

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E        +   L+
Sbjct: 423 GLGLAIVKQIVHIHDGKWKIESEKGKGTTVMIQLQ 457


>gi|75762776|ref|ZP_00742603.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
 gi|74489732|gb|EAO53121.1| Sporulation kinase [Bacillus thuringiensis serovar israelensis ATCC
           35646]
          Length = 408

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           M +     +     +  + + I H+I +P+ A+    ++  +    +     ++      
Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPADTMSYDIMLQEIER 243

Query: 60  AIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
               +  +          +      D L+ +  + +       V   +QV          
Sbjct: 244 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 303

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 304 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 362

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 363 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 406


>gi|125973908|ref|YP_001037818.1| multi-sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
 gi|125714133|gb|ABN52625.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           thermocellum ATCC 27405]
          Length = 589

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 58/225 (25%), Gaps = 23/225 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
             +     S + H++ +PI  I   +E L    + +       +++I + +      +  
Sbjct: 363 EQIRTEFVSNVTHELKTPITPIRGFIETLKNGAMNNPVVAERFLEIIDIEAERLHELIND 422

Query: 67  M-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +                       +  +  + Q I     +     V             
Sbjct: 423 ILLLSEIETKLKDTNLEIFDLKSMVDDVFKVMQNIAKEKKISLNNNVRDEVLMKANINRM 482

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            ++++NL         + G V++       + + S+K  G          +I +      
Sbjct: 483 KQLIMNLVDNGIKYNVQNGSVSVDGYREDGKVVISVKDTGIGIPSAHIP-RIFERFYRVD 541

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    +    V  + +     +    +          + 
Sbjct: 542 KGRSRGMGGTGLGLSIVKHIVNLYNGEIKVNSVVGEGTEFIVKIP 586


>gi|323976120|gb|EGB71213.1| phosphate regulon sensor kinase PhoR [Escherichia coli TW10509]
          Length = 431

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  ++          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLQGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNDLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLHIESTVGKGTRFSFVIP 422


>gi|315645639|ref|ZP_07898763.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315279117|gb|EFU42427.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 621

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 60/223 (26%), Gaps = 10/223 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           M  N       M++++ L + + H++ +P+      L+LL       E E + L  +   
Sbjct: 396 MFNNELQRSEKMEIISELAASVAHEVRNPLQVTRGFLQLLTGKAEAAEREYLDLALVELD 455

Query: 59  SAIIRLKFMRLAFGY-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            A   +                    +    +  I   +         V +         
Sbjct: 456 RASGIITDFLTFAKPEFGKDTLLQISEEFKHIEGILAPLAHLQGGRITVDIPEDITIRGN 515

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           S +  +  +N+   +  +L   G V I     +N+    +  NG      +   ++ +  
Sbjct: 516 SSKFKQAFINIIKNSIEALGEEGVVHIRCYRQQNQVFIHVVDNGEGM-GADVIARLGEPY 574

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +       +               L 
Sbjct: 575 FSNKTKGTGLGLMVTFRIIEAMDGDIFFTSRKGVGTDAIITLP 617


>gi|313891467|ref|ZP_07825083.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313120242|gb|EFR43418.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 650

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 15/225 (6%), Positives = 56/225 (24%), Gaps = 21/225 (9%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLK 65
           +  +     + + H++ +P+  I    E++      +          I   S   +  + 
Sbjct: 343 AEKMRREFSANVSHELKTPLTTISGFAEMIAKGMCKDTEDIKNFSNKIHQESRRMLSLID 402

Query: 66  FMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            +             +  + S+  +      +    A  K ++++   E + +    A +
Sbjct: 403 TIMHLSKIEEKETTISWKLVSVDSVLKYVADLITSQATKKDLKINLDIEPVYMYGNAALL 462

Query: 119 LLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGN 171
                 +   ++              +  +     ++   G           F +     
Sbjct: 463 SELFMNLLDNAVKYNVKGGNITVHIKRLKEKLMKITISDTGVGIPEEKQNRVFERFFRAE 522

Query: 172 VEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       +   +  ++    I+     +   L 
Sbjct: 523 ESRNKATGGSGLGLSICKHIIERHNGKIEISSIEGKGTTVIVELP 567


>gi|307252561|ref|ZP_07534456.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306859966|gb|EFM91984.1| hypothetical protein appser6_10770 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 586

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 62/221 (28%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I     +L E  + ++  + ++  ++SA+              
Sbjct: 86  SVLMATISHELRTPLNGIIGLSRILLEGELTEQQREYLKTINISAVSLGHIFSDIIDLEK 145

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                       ++ I                 +   ++IL
Sbjct: 146 IDSRRVELFRKEIEFSQLISDISNFGNLMAEQNKIKFHIDYSDDLPNFIYVDNARLSQIL 205

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVE----- 173
            NL   A    P GG + +SV+   N    FSLK  G      E+               
Sbjct: 206 WNLVSNAVKFTPAGGDIYLSVKRIDNDHFSFSLKDTGIGIPKHEQRKVFAMFYQAENSQE 265

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  I       +A      L            +  ++
Sbjct: 266 RKAQGSGIGLAISKRIAKLMGGDLTLHSEMGKGSTFTLTIQ 306


>gi|301310964|ref|ZP_07216893.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300831027|gb|EFK61668.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 769

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 52/232 (22%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           M + +        S  L +   + + H+I +P+ AI     LL +    +E  +   +  
Sbjct: 533 MEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQTNPSEETKEFCEIIE 592

Query: 58  MSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +  + L+               M   +           L    Q               
Sbjct: 593 TNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKGGVTLYCEIPE 652

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +++ N    A     +G       +       F +K  G        
Sbjct: 653 QDCVIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDG-LYFYVKDTGKGIERKNL 711

Query: 164 FTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      + I    +       +      ++  E  +         + 
Sbjct: 712 PHVFERFAKFDSFIQGTGLGLSICQTILENLHGKIGVESEEGKGSTFWFTIP 763


>gi|295102318|emb|CBK99863.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [Faecalibacterium
           prausnitzii L2-6]
          Length = 358

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 61/235 (25%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSM--DLVALLCSRICHDIISPIGAIHNS----------------LELLDEV 43
            K     + S    + A L   + HD+ +P+ +I+ +                ++LL E 
Sbjct: 110 KKQEQLRMESETEKMRANLLRAVSHDLRTPLTSIYGACSTVIDNYDSLGREQKIKLLSEA 169

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             + + +  +  + +S                 ++ L+    +           +     
Sbjct: 170 CADAQWLNRMVENLLSVTRIDADGVAIQKTPTVLEELVDTVLVRFQKLHPGVPVEVKLPD 229

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S    ++L NL   A        ++T+ V       +F +  NG        
Sbjct: 230 DFIVIPMDSMLIQQVLTNLLENAVLHAKGMTRLTLRVFTLGQRAVFEVIDNGCGIPKERL 289

Query: 164 FTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            T      +             I       +   +   +  E        +   L
Sbjct: 290 KTLFTGTTLTQDTSSGGKHGMGIGLSVCAAIIKAHGGEIKAESTPGEGTTIRFWL 344


>gi|291537898|emb|CBL11009.1| Signal transduction histidine kinase [Roseburia intestinalis XB6B4]
          Length = 478

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM------ 67
             S + HD  SP+ +I   +E + +      ++D+ + +I   +       K +      
Sbjct: 252 FVSNVSHDFRSPLTSIKGYVEAMLDGTIPVEMQDKYLNIILFETERLNKLTKSLLELNKF 311

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLN 121
                     S D    +    Q  E            +    T        +  ++L N
Sbjct: 312 GSHGVMLDITSFDINHTIRMTVQTFEGTCMEKHISFNLILSGETLFVSADFSKIQQVLYN 371

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID- 177
           L   A         +TI   +   +   S+K  G         + + +    ++    D 
Sbjct: 372 LIDNALKFSLANSAITIETTEKNEKVFVSVKDTGIGIPKDSIKKIWDRFYKTDLSRGKDK 431

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +   +     +         L 
Sbjct: 432 KGTGLGLSIVKEIIQAHGENINCISTEGVGTEFIFTLP 469


>gi|317050581|ref|YP_004111697.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945665|gb|ADU65141.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 483

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 18/228 (7%), Positives = 64/228 (28%), Gaps = 16/228 (7%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
            + +   L  +  L A+  L + + H++ +P+  I    +  L    + +   + ++   
Sbjct: 248 EQRLQQRLRQTEKLAAIGQLAAGVAHELGTPLSVIDGKAQRALRRQDMCEHGREALQQVR 307

Query: 58  MSAIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                          F   +     +  + +       + +       R+Q+        
Sbjct: 308 HEVQRMEHIVRQLLDFSTNSMHCRNTSAARLAQSAASALADRQKRSAVRLQLRGESTAPL 367

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++   L  +   ++       +    +   +   F+++ +G          +I 
Sbjct: 368 FRADPIRLEQVLVNLLENAMEAAPGGEVHLAWEVCSHRLCFTVEDSGPGVPES-ISHRIF 426

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +        +    V  +  E+   +          +   +L 
Sbjct: 427 EPFFTTWPVGQGTGLGLAVVHGIIEEHGGTIEVGRSALGGALFQVVLP 474


>gi|323528784|ref|YP_004230936.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
 gi|323385786|gb|ADX57876.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1001]
          Length = 941

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 56/233 (24%), Gaps = 23/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60
           AK      +     +   + + H++ +P+  I    ++L  +  +E      I +   S 
Sbjct: 471 AKEHADAANQAK--SDFLAHMSHELRTPLNGILGYAQILRRDKNLEQRQADGIAVIQRSG 528

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
              L  +             + L   + ++E FI                     +    
Sbjct: 529 EHLLAIINDILDMAKIEAGKVDLYLSDVLLERFIYFIAGTIRLKATEKGLAFSCDMAPGL 588

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   +   ++LLNL   A      G               F ++  G       + 
Sbjct: 589 PAAVRVDEKRLRQVLLNLLSNAIKFTETGSVCLRVDWTPPTRLRFEVQDTGIGIEEAHRE 648

Query: 165 TQIVDG----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           T         +    +    +       L       +  E       +    L
Sbjct: 649 TIFRPFEQVSDARHRVGGTGLGLAISRQLVRLMGGEIHVESRRGGGSIFRFEL 701


>gi|300771713|ref|ZP_07081588.1| phosphate regulon sensor histidine kinase protein PhoR
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761702|gb|EFK58523.1| phosphate regulon sensor histidine kinase protein PhoR
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 343

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
              I    S         S I H+  +P+ AI   +E L      ++  +    +     
Sbjct: 103 KSEIDKLRSQEKFRREFLSNISHEFKTPLFAIQGYIETLQDGLIEEDPEMAKGFLDKASK 162

Query: 56  SSMSAIIRLKFMRLAF-----GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +       +  +           + +++       I++ IE+     +  ++    ++  
Sbjct: 163 NLDRLSYLIHDLDEISKLESGRISLNIEKFDLSELIKETIENLDDKARSQKIDIVFKQKY 222

Query: 111 LS--------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
            +        ++  ++L NL   +      GG   I +     + +  +  +G       
Sbjct: 223 QNVTFVKADRKKIQQVLTNLIDNSIKYGKTGGSTDIRIFPLFEQVLVEVTDDGQGIEEKN 282

Query: 161 -PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +    +      I    +    V  +   ++  +     +         LEK
Sbjct: 283 LPRVFERFYRTDKSRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTLEK 340


>gi|269838216|ref|YP_003320444.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
 gi|269787479|gb|ACZ39622.1| histidine kinase [Sphaerobacter thermophilus DSM 20745]
          Length = 538

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 64/251 (25%), Gaps = 39/251 (15%)

Query: 1   MAKNICFNLSSMDLVAL-------------LCSRICHDIISPIGAIHNSLE--LLDEVGI 45
           MA  +   +   +L A              L + + H++ +P+  +   LE  L      
Sbjct: 277 MAAELERAMR--ELAAERDTVAHLLQSQRELVAAVSHELRTPVATLRGYLESALAHWNEE 334

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               ++           +L+ +         V++      +E V    +        +  
Sbjct: 335 PPPTLRADLAIMARETEQLQRLIDDLFTLSRVEAGQLPLRLEGVDVGTVLRRCAAAAAGL 394

Query: 106 GEK-----------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
             +                    +    +I+ NL   A    P GG V +  +   +  +
Sbjct: 395 AWERSRVEVLVEVAPDLPPAHADAARLEQIVRNLLTNAVRHTPPGGLVLLGAERDGDAIV 454

Query: 149 FSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIID 203
             +  +G      +    + +   G            +    V  L       +  E   
Sbjct: 455 VQVSDSGEGIVPEDLPRIWERFYRGASARDDARGGSGLGLALVKELTEAMGGSVAVESTL 514

Query: 204 DHNVVLSALLE 214
                 +  L 
Sbjct: 515 GQGSRFTVRLP 525


>gi|188576089|ref|YP_001913018.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520541|gb|ACD58486.1| two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1364

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I +++   ++      +    
Sbjct: 687 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LEK
Sbjct: 866 FVITLEK 872


>gi|170744480|ref|YP_001773135.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168198754|gb|ACA20701.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 688

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 76/238 (31%), Gaps = 26/238 (10%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVM 50
            K +  +L  +  L A+  L   + HD  + +  +  +L+LL +               +
Sbjct: 304 RKEMELSLVHASKLEAVGRLTGGVAHDFNNMLSIVIGNLDLLQKSLVADEKAHQRVQNAI 363

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  +      L   R +      +D    +  + Q++   +     V +        
Sbjct: 364 DGAQRCAELTSRLLAVSRRSPLQPAPLDLGSFMPGLVQLLRRTLGERIGVTLDLGDAPPA 423

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNE---------NIFSLKINGNLA 158
           +S +R+++   L      A  ++P GG ++I+V+ +             + S+   G   
Sbjct: 424 VSVDRSQLEAALINLAVNARDAMPEGGHLSIAVRRAGEADRAGRAADAVLISVADTGTGM 483

Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++ +    +  +     +    V     ++   +  E +       +  L 
Sbjct: 484 PAS-VLARVFEPFFTTKAEGKGTGLGLSMVHGFLQQSGGHIDVESVPGQGTTFTMSLP 540


>gi|163747897|ref|ZP_02155231.1| Osmosensitive K+ channel histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161378833|gb|EDQ03268.1| Osmosensitive K+ channel histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 523

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED--------------- 47
           +       +  L + L S + HD+ +P+ +I  +   L E G                  
Sbjct: 284 EAARLATETEKLRSALLSSVSHDLRTPLVSIIGAASTLAEGGDRYTEPMRQDLAETIREE 343

Query: 48  -EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            E +     + +                  +  +IG                        
Sbjct: 344 GERLDRYVQNLLDMTRLSHGALRPRCVASDLLEIIGNARRRLRSNLAPYKIVLSLPDSMP 403

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L+N+   A    P   ++ +S          ++   G       +   
Sbjct: 404 LIDVDPILIEQLLVNVLDNAAKYAPDNSEILLSGHAESTWLKLAISDQGPGIPAQARSDV 463

Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPE--IIDDHNVVLSALLE 214
                  +  D       +       +   +   +  +    D+    +   L 
Sbjct: 464 FEMFYRVTAGDTQRAGTGLGLAIARGIVDAHGGDIYVQATNPDESGTTIVFRLP 517


>gi|154505268|ref|ZP_02042006.1| hypothetical protein RUMGNA_02782 [Ruminococcus gnavus ATCC 29149]
 gi|153794466|gb|EDN76886.1| hypothetical protein RUMGNA_02782 [Ruminococcus gnavus ATCC 29149]
          Length = 353

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 66/239 (27%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           +  N    ++       L S I HD+ +PI AI   +E + +      E M     +  +
Sbjct: 107 LKANAEEKVAYDKENKELISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTIYN 166

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------------VDKRVQV 102
               +  +     +   +D+     +   +                          R  +
Sbjct: 167 KANEMDLLINELTFYSKIDTNRIPYNFTTISAKQYFGDCAEDLFMELEAKGVQFRYRNYL 226

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
               + I    +  +++ N+   +   + +         +D  +     L  NG      
Sbjct: 227 ETDSKVIVDPEQLRRVISNIVGNSVKYMDKSDPSITMDLKDVGDFVQIELGDNGKGIAAK 286

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  E+  ++     +     +  ++ K
Sbjct: 287 DLPNIFDRFYRTDASRNSSKGGSGIGLSIVKKIVEEHGGKIWATSEEGVGTTMYFVIRK 345


>gi|15804683|ref|NP_290724.1| putative histidine kinase [Escherichia coli O157:H7 EDL933]
 gi|15834328|ref|NP_313101.1| histidine protein kinase [Escherichia coli O157:H7 str. Sakai]
 gi|168748055|ref|ZP_02773077.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168755270|ref|ZP_02780277.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760949|ref|ZP_02785956.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766359|ref|ZP_02791366.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774458|ref|ZP_02799465.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168780512|ref|ZP_02805519.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4076]
 gi|195935879|ref|ZP_03081261.1| putative histidine protein kinase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806652|ref|ZP_03248989.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208811940|ref|ZP_03253269.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819744|ref|ZP_03260064.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400726|ref|YP_002273636.1| hypothetical protein ECH74115_5603 [Escherichia coli O157:H7 str.
           EC4115]
 gi|217324536|ref|ZP_03440620.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254796113|ref|YP_003080950.1| putative histidine kinase [Escherichia coli O157:H7 str. TW14359]
 gi|12519054|gb|AAG59289.1|AE005642_8 putative histidine kinase [Escherichia coli O157:H7 str. EDL933]
 gi|13364551|dbj|BAB38497.1| putative histidine protein kinase [Escherichia coli O157:H7 str.
           Sakai]
 gi|187769930|gb|EDU33774.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017420|gb|EDU55542.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001820|gb|EDU70806.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357544|gb|EDU75963.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189363911|gb|EDU82330.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189368536|gb|EDU86952.1| integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. EC4501]
 gi|208726453|gb|EDZ76054.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733217|gb|EDZ81904.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739867|gb|EDZ87549.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162126|gb|ACI39559.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217320757|gb|EEC29181.1| conserved hypothetical protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254595513|gb|ACT74874.1| putative histidine kinase [Escherichia coli O157:H7 str. TW14359]
 gi|320190778|gb|EFW65428.1| Putative histidine kinase [Escherichia coli O157:H7 str. EC1212]
 gi|326341857|gb|EGD65640.1| Putative histidine kinase [Escherichia coli O157:H7 str. 1125]
 gi|326346568|gb|EGD70302.1| Putative histidine kinase [Escherichia coli O157:H7 str. 1044]
          Length = 756

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 71/232 (30%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q    ++     
Sbjct: 389 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 448

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 449 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 508

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G         +
Sbjct: 509 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGCGM-SQAVKS 567

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 568 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 619


>gi|117920460|ref|YP_869652.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
 gi|117612792|gb|ABK48246.1| putative PAS/PAC sensor protein [Shewanella sp. ANA-3]
          Length = 1119

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +          + +   + + H+I SP+ AI   +ELL +  +  +      ++  + 
Sbjct: 484 LQQAKEQAEQGSKVKSRFLATMSHEIRSPLNAILGGVELLLDSSLSKDQRIHANIAREAG 543

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------------QVSW 104
              L  +     ++      + L   E   +  +A   ++                  + 
Sbjct: 544 SALLHTINDILDFSKIEAGQMVLESHEFEPDKLVAQVLQILEPKAFEKGLELVSFVNRNV 603

Query: 105 TGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160
               +   +   ++L NL   A                    ++ +    +  +G     
Sbjct: 604 PRTVVGDQQRLRQVLHNLVDNAIKFTASGTITVEMWIPDNHQTEVQLYCRVTDSGIGI-S 662

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            E  +++            +      +       L       +  +         +  
Sbjct: 663 AEAQSKLFKEFSQVHDTHNTNYKGTGLGLAICSELITMMGGTIELQSELGQGSRFTFY 720


>gi|328543926|ref|YP_004304035.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [polymorphum gilvum SL003B-26A1]
 gi|326413670|gb|ADZ70733.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 379

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 69/242 (28%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51
           MA+ I   L+S         L + + H+I +P+  I  + +LL+      +  +   +M 
Sbjct: 126 MAEKIDRQLTSRGAARTVTGLAAMLAHEIKNPLSGIRGAAQLLEQSASEEDRALTRLIMD 185

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                         F          V+  + L  ++++ +   A  KR+   +      +
Sbjct: 186 EADRIVKLVDRMEVFSDERPIEREPVNIHVVLDHVKRLADSGFARGKRIVEDYDPSLPPV 245

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------------------ENIFSLK 152
              R +++     +   +    G                                 F ++
Sbjct: 246 HANRDQLIQVFLNLVKNASEAIGDDPDGEIRITTAFRPGVRLSVPGTTEKVSLPLEFCVR 305

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG      +    + +  + +  +   +    V  +  ++   +  +           L
Sbjct: 306 DNGPGV-PEDLLPHLFEPFITTKPNGSGLGLALVAKIIGDHGGVIECDSQPRK-TTFRIL 363

Query: 213 LE 214
           + 
Sbjct: 364 MP 365


>gi|323965349|gb|EGB60807.1| phosphate regulon sensor kinase PhoR [Escherichia coli M863]
 gi|327254716|gb|EGE66332.1| phosphate regulon sensor kinase PhoR [Escherichia coli STEC_7v]
          Length = 431

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  ++          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLQGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQQRQTFTFEIDNDLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLHIESTVGKGTRFSFVIP 422


>gi|315122102|ref|YP_004062591.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter solanacearum CLso-ZC1]
 gi|313495504|gb|ADR52103.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter solanacearum CLso-ZC1]
          Length = 794

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 79/249 (31%), Gaps = 36/249 (14%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  L A+  L   I HD  + + AI  S +  LL     +     L+ + 
Sbjct: 395 QKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIK 454

Query: 57  SMSAII------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +          L F R        ++    + ++  +I+  I+   +V++    E+  
Sbjct: 455 HNANRAAILVRQLLAFSRKQTMCLVVLNLTEVISNLRMMIQKLISEPPQVKLHVDYERDL 514

Query: 111 LSR-----ERAKILLNLFMVAHASLP-----------------RGGKVTISVQDSKNENI 148
                   +  ++L+NL + AH ++                         S    K+  +
Sbjct: 515 WDVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTIRTRNIPSTEIHSFNYSDLPKKDMVL 574

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             ++  G      +   +I +    +        +    V  +  ++   +LPE      
Sbjct: 575 VEVEDTGIGI-SSDIMEKIFEPFFTTKEVGKGTGLGLSVVYGIIRQSGGYILPESEVGKG 633

Query: 207 VVLSALLEK 215
            +    L +
Sbjct: 634 TIFRIFLPR 642


>gi|313157976|gb|EFR57382.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Alistipes sp. HGB5]
          Length = 474

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 54/231 (23%), Gaps = 21/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57
           +         S  L +   + + H+I +P+ AI     LL    I     +    S    
Sbjct: 222 LRAARDKARESDRLKSAFLANMSHEIRTPLNAIIGFANLLTSEDIPFSEAEKQEYSRLIT 281

Query: 58  ---MSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                 +  +             M   FG       L  +   +++        +     
Sbjct: 282 SNGDQLLRLISDILDLSKIESNTMEFHFGEHSLHALLTDIYQAQRLCMPEGVRLRLDMPQ 341

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE 162
                +  +    +++ NL   A      G             +    +   G      E
Sbjct: 342 ADTPIVTDASRLKQVVNNLINNAAKFTDDGSITFGFRSPQGCEQVELFVHDTGKGI-AQE 400

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              +I +   ++   +    +       +       +  E         + 
Sbjct: 401 HLDRIFERFYKADSFVKGVGLGLSICRTITEYLGGAISVESESGKGTRFTI 451


>gi|294055461|ref|YP_003549119.1| PAS/PAC sensor hybrid histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614794|gb|ADE54949.1| PAS/PAC sensor hybrid histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 760

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 78/238 (32%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + ++      +  +  ++ L   I HD  + + A+  ++ +    L     E   ++   
Sbjct: 371 LKQHEEELFMAEKMQSISQLAGGIAHDFNNMLTAVLGNISVVRMSLGSEHEEANRLESAE 430

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++ A    + +         V     +  + +    F+     V+     +    + +
Sbjct: 431 KAALQARTLTQQLLSFSKGGAPVIEATTIDQLVEDCAQFLLRGSNVRCEVEKDAELWAVD 490

Query: 115 RA-----KILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNL 157
                  +++ NL + A+ ++P GG + + +++              +    ++   G  
Sbjct: 491 ADKGQVGQVVNNLIINANQAMPDGGVIRLRLENASVRSNDITSLERGDYVCIAVADEGTG 550

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               E   +I D    +  D + +       +   +K  +L E +          L K
Sbjct: 551 I-PAENLNRIFDPYFTTKKDGNGLGLASCYSIIRNHKGVILVESVVGEGTEFKVYLPK 607


>gi|317151881|ref|YP_004119929.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316942132|gb|ADU61183.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 670

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/244 (8%), Positives = 62/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIR- 54
           M +     + +  + +L  + + + H+I  P+ AI    +   L+ E   +      +  
Sbjct: 418 MIEKDAQLIQASKMKSLGEMSAGVAHEINQPLNAIKMGSDFLCLMGEENADVPKEHFMEV 477

Query: 55  -----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101
                +    A   +  +R     +  ++  + L    + +   +     +         
Sbjct: 478 VREISIQVDRAAEIINTLRSFGRKSDFMEERVDLNQPVRAVLSMLRRQFELDNISFDLEL 537

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------KNENIFSLK 152
                  +  S    +++ NL   A  ++           D                 ++
Sbjct: 538 TEGLAPVMAHSNRLQQVVFNLVANARDAINDKSSPHDEGSDRRISIRSGAEGASVFIEVE 597

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+     E   +I +    +        +       +  +    +          V  
Sbjct: 598 DTGSGI-DEEDREKIFEPFFTTKEAGQGMGLGLAITYGIVKDYGGDIRIRSEKGKGSVFR 656

Query: 211 ALLE 214
               
Sbjct: 657 MQFP 660


>gi|298528476|ref|ZP_07015880.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
 gi|298512128|gb|EFI36030.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
            thiodismutans ASO3-1]
          Length = 1599

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 63/248 (25%), Gaps = 34/248 (13%)

Query: 1    MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            + K     + + +         +   + + H+I +P+  I  S+E+L      +   +++
Sbjct: 1034 LEKAQQELIQAKEQAEAANRAKSTFLANMSHEIRTPLTGIMGSMEMLASEISSENGRRIM 1093

Query: 54   RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-- 111
             ++  SA    + +      +      + L   E V+   +   + +  +    K     
Sbjct: 1094 DMTRESARSLQRIIDDILDLSKVEAGRMELSSREFVLSAVLDRVQGLYAAQAENKNVRLS 1153

Query: 112  --------------SRERAKILLNLFMVAHASLPRGG------KVTISVQDSKNENIFSL 151
                          +    +IL NL   A      G               SK    F +
Sbjct: 1154 KSLDPGVQDNLLGDASRLEQILRNLVGNAVKFTSHGQVTLRARPADSQDGSSKQVVRFEV 1213

Query: 152  KINGNLARFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
            +  G      +            +          +       L       +  E      
Sbjct: 1214 QDTGPGIPEDKLTDIFESFTQADSSFKKSHQGTGLGLTICRQLTRLMGGNINVESAPGEG 1273

Query: 207  VVLSALLE 214
                A + 
Sbjct: 1274 STFVAEIP 1281


>gi|254444992|ref|ZP_05058468.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198259300|gb|EDY83608.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 777

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 53/226 (23%), Gaps = 21/226 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           +   L +  L +   + + H++ +P+  I    ++L    + +      +L        +
Sbjct: 394 LERALEASRLKSEFIATMSHELRTPMNGILGMADILLLTELSESQKDSAKLIKKCGQNLM 453

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEK 108
             +     ++        L      I+  +                     +    +   
Sbjct: 454 SIISDILDFSKIETRNFQLEVEPLEIQLIVNETLAFFRPKAESKGISLRCEIDEHCSDIF 513

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              S+   ++L NL   A      G     +    +      ++  G       +     
Sbjct: 514 YGDSKRIRQVLTNLVGNAIKFTEEGYVRVRADFLGEGRMRIEVEDTGVGIDEVFQSKVFQ 573

Query: 169 -----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                DG+         +       L       +  +         
Sbjct: 574 AFTQEDGSDSRRYGGTGLGLAITKQLVELMGGLIDFDSQVGVGSRF 619


>gi|192289948|ref|YP_001990553.1| ATP-binding region ATPase domain protein [Rhodopseudomonas palustris
            TIE-1]
 gi|192283697|gb|ACF00078.1| ATP-binding region ATPase domain protein [Rhodopseudomonas palustris
            TIE-1]
          Length = 1710

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 69/237 (29%), Gaps = 24/237 (10%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIED----EVM 50
            + +       +  + AL    + I H+I  PI +I    E     L+    +     + +
Sbjct: 1468 LREARAELGRTSQMTALGSFAASIVHEINQPIASILAQTEAALRWLNREQPDIAEVTQGL 1527

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQV 102
              IR S       +K +R       +  S I L ++ + +   IA D          V +
Sbjct: 1528 TRIRNSGRRTADIVKSLRSLGKQAPATFSPICLEEVVEEVMRLIAEDLDAGSVQITVVLL 1587

Query: 103  SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKINGNL 157
                       +  +++ NL   A  ++    +    +  S           +++ +G  
Sbjct: 1588 DQRRRISADRVQLQQVIFNLVTNAIHAMAEMEESARRIVISTTEAGDGMVRLTIEDSGCG 1647

Query: 158  ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +      +       +   ++  +               + 
Sbjct: 1648 M-SEEVRGRIFEPFFTTKTAGMGVGLAICRSIVELHRGTISVRSTPGQGSTFEIAIP 1703


>gi|18450332|ref|NP_569203.1| hypothetical protein pli0050 [Listeria innocua Clip11262]
 gi|16415833|emb|CAC42048.1| pli0050 [Listeria innocua Clip11262]
          Length = 888

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIRLSS 57
           I   +    +   L   I HD+ +P+ +I  +         +L+E   ++    +   S 
Sbjct: 650 ISLRMQQEQVRTNLLRAISHDLRTPLTSISGNAGVLKANSHILEEKQKQNLYNDIYDDSI 709

Query: 58  MSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                           +           +D +I         +                 
Sbjct: 710 WLINLVENLLSITRLDEGSSNINMQPDLIDEVISEALRHIDRKSIEYNISMEIQDEDLIV 769

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              S+   ++++N+   A    P G K+ I  +   +     +K NG      E   +I 
Sbjct: 770 NIDSQLIMQVIINIVDNAIKYTPPGSKICIVAKQDMDSVCVEIKDNGEGIPDKE-KDKIF 828

Query: 169 DGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D                 +  Y  + +   ++  +  +       +   +L 
Sbjct: 829 DMFYTANNINADGRRGLGLGLYLCMSIIQAHQGEMYVKDNIPKGAIFGLVLP 880


>gi|22297573|ref|NP_680820.1| adaptive-response sensory kinase [Thermosynechococcus elongatus
           BP-1]
 gi|54036427|sp|Q8DMT2|SASA_THEEB RecName: Full=Adaptive-response sensory-kinase sasA
 gi|22293750|dbj|BAC07582.1| two-component sensor histidine kinase [Thermosynechococcus
           elongatus BP-1]
          Length = 380

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 65/241 (26%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +        +     + S + H++ +P+ A   +LE L+    E+   QL        
Sbjct: 137 LRQERDRLAEQLQFKDRIISLLAHELRNPLTAGGIALETLESNLQEESSQQLPIEDIQRL 196

Query: 61  IIR----------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
                                       +++               +  ++  +      
Sbjct: 197 FHHARSQTQTMGQLITDLLLAARGPQDKLQIMARQLDLRQLCQETVEDVRLNFERKKQHF 256

Query: 99  RVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGN 156
              +      +    +R  ++L+NL   A    P GGK+   +      +   ++   G 
Sbjct: 257 TTDIPLDLPLVYGDGDRIRQVLVNLLDNACKYTPEGGKIHLSAFHRMTQKVQVTVSDTGP 316

Query: 157 LARFPEKFTQIVDG---NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                ++     +    + +  I+ + I       +   +  ++  +            L
Sbjct: 317 GIPIEQQEKIFGETVRLDRDRAIEGYGIGLALCRQIIRMHYGQIWVDSQPGKGSCFHFTL 376

Query: 214 E 214
            
Sbjct: 377 P 377


>gi|329904912|ref|ZP_08273950.1| Osmosensitive K+ channel histidine kinase KdpD [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547808|gb|EGF32577.1| Osmosensitive K+ channel histidine kinase KdpD [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 287

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 16/229 (6%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++    + S  L   L S + HD+ +P+ A+    E L    + +    L       A+
Sbjct: 46  ARSALVQMESERLRNSLLSALSHDLRTPLTALVGLAEALVRSSLAEAPAALATALHREAL 105

Query: 62  IR----LKFMRLAFGYTGSVDSLIGLGDIEQVI------EDFIAVDKRVQVSWTGEKIDL 111
                 +  + +A    G+V   +    +E+V+               +          +
Sbjct: 106 RMSTLVVNLLDMARLEAGAVQLRLEWQSLEEVVGTALAACGNTLAQHHIVTDLPASLPLV 165

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FT 165
             +     ++L NL   A    P G  + IS   + N+   ++  NG      +    F 
Sbjct: 166 RFDAVLIERVLCNLIENALKYTPPGSTIRISALPAGNKICLTVADNGPGFPAGQIGALFD 225

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   G  ES I    +       +   +   +      D        L 
Sbjct: 226 KFARGVNESAIPGVGLGLAICRAIIDAHGGSIEGATNADGGASFVITLP 274


>gi|319407199|emb|CBI80838.1| Sensor protein [Bartonella sp. 1-1C]
          Length = 850

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 62/243 (25%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           M ++       M  V  L   I HD  + + AI  S + L             +  I+ +
Sbjct: 461 MLEDKMIQNQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNTHRSFDPAYADLINIKNN 520

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
           +  A   ++ +             +   ++   I + I       +           +  
Sbjct: 521 ANRAAALVQQLLAFSRKQTLRPKKVDFTELLSDIRNLILPLLGNNIQLKIIHGKDLWDVK 580

Query: 115 -----RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKIN 154
                  ++++NL + A  ++                +  K   +          ++   
Sbjct: 581 VDQASFQRVIMNLVINARDAMLDGGIVTITTNNITKQQSAKFNYAGFVVGEYVQLTVSDT 640

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          ++ +    +        +    V  +  +    +  +  +         
Sbjct: 641 GTGISAV-IQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGYIYCDSQEGEGTTFHIF 699

Query: 213 LEK 215
           L +
Sbjct: 700 LPR 702


>gi|313673210|ref|YP_004051321.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939966|gb|ADR19158.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 616

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 64/225 (28%), Gaps = 12/225 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSS 57
            +     L+ +  + LL S I H++ +P+ +I    ++L E         + +  I+  +
Sbjct: 387 RQKKIELLNRLSSIGLLSSGISHELNTPLNSIILLCDILLEEAKKGKVNTDDINNIKNEA 446

Query: 58  MSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +  +K +     +        +     L    +   +             G  +   
Sbjct: 447 KRCVSIIKNLKLLDPQNKIQTNEVISIKEVLERNIKYFNNIFKKLHVESDIKDGTILANR 506

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               ++  N+F+ A  +     ++ +   +   E    +K  G           I     
Sbjct: 507 VLINQVFFNIFLNAIEASDEECRIFVRSFEKDGEVWIVIKDYGRGMDEDTINN-IFVPFF 565

Query: 173 ESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +        +    V  +  ++  ++            +    K
Sbjct: 566 TTKQPDKGMGLGLSLVYKIVSDHNGKIEVTSKKGEWTEFTLRFLK 610


>gi|295317727|gb|ADF98104.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 417

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDLK 296

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + R++  +++LN+   A    P  G++ +      +    S+K +G      +  
Sbjct: 297 HINIMIDRDKISQVILNIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411


>gi|189466425|ref|ZP_03015210.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM
           17393]
 gi|189434689|gb|EDV03674.1| hypothetical protein BACINT_02800 [Bacteroides intestinalis DSM
           17393]
          Length = 628

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 64/229 (27%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI     +L E     E  + IR+   + 
Sbjct: 395 LIQAKERAEESDRLKSAFLANMSHEIRTPLNAIVGFSSILAETTDTPENHEYIRIIEDNN 454

Query: 61  IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            + L+ +                    VD    +  +E      +  + +    ++ +K 
Sbjct: 455 YLLLQLINDILDLSRIEAGLLDFCYTDVDVNSCIRKLEDTFRFRMPANVKCVTEFSMKKC 514

Query: 110 DLS---RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +        ++L N F  A     +G            +  F ++  G      ++ T 
Sbjct: 515 YIHTEKNRLMQVLGNYFSNAIKYTNQGSITIGYYPPKNEKIRFYVRDTGCGISPDKQQTI 574

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +      ++A +    +      +          
Sbjct: 575 FQRFVKLDNFKQGTGLGLSICQMIAEKMNATVGIHSEVNKGSEFWIEFP 623


>gi|254830992|ref|ZP_05235647.1| hypothetical protein Lmon1_06518 [Listeria monocytogenes 10403S]
          Length = 459

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA  +     S        + + H++ SP+ ++     LL    + ++            
Sbjct: 228 MASELE---KSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEE 284

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             RL  +        S+D    L   E V              W+  + +L+        
Sbjct: 285 TTRLSSLSKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADV 344

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++  NL   A    P+GG + + + +        ++ +G      +    
Sbjct: 345 NYTGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDMTNVFVEVQDSGVGISKVDMTKI 404

Query: 164 FTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 405 FDRFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458


>gi|153940624|ref|YP_001389635.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152936520|gb|ABS42018.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
          Length = 472

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 232 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 291

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 292 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDLK 351

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + R++  +++LN+   A    P  G++ +      +    S+K +G      +  
Sbjct: 352 HINIMIDRDKISQVILNIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 411

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 412 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 466


>gi|86160642|ref|YP_467427.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777153|gb|ABC83990.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 613

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIR 54
           +       L +  L AL  L + + H++ +P+ AI   L +L           E++   +
Sbjct: 375 LKTAQDQILRTRRLAALGSLGAGLAHELNNPMTAIVGYLAILKRELPAGSAHAEMIGRAQ 434

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV---------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +      ++ +R       S+              L   E  +               
Sbjct: 435 EQTARVARVVEDLRSFADQERSMQGRRFSLVGPVRAALALYEDRLRAAGIELTTRFDERL 494

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF 164
            +      +  +++ +L   A  ++PRGG + +S            +   G         
Sbjct: 495 PDAQGDPVQIQQVVAHLVENAINAMPRGGSLEVSLGTVDGEALRLRIADTGKGIPVT-IR 553

Query: 165 TQIVDGNVEST-IDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +        +       +   +  R++ E  +     ++ LL 
Sbjct: 554 ERIFDPFFTTKEHPGRVGLGLSVSHSIVEAHHGRIVVESEEGAGAAITVLLP 605


>gi|77359078|ref|YP_338653.1| sensor protein [Pseudoalteromonas haloplanktis TAC125]
 gi|76873989|emb|CAI85210.1| putative sensor protein; similar to LuxQ in Vibrio harveyi, similar
           to ArcB sensor in E. coli [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 896

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57
           + +       +  + +   + + H++ +PI  I     L  +     +    I  +    
Sbjct: 513 LRQEKQKADEASQIKSQFLANMSHEVRTPINGIKGLHYLALQQNDWQQARTYIEQADGAL 572

Query: 58  ----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEK 108
                     L F ++  G    +   + +G + +     +  +       +++ +    
Sbjct: 573 GVLLRVLNDLLDFSKMEAGKLDLMQEPVDIGRLAEEVINLIQFEVSVKSLEIKLDYDKNT 632

Query: 109 IDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +         ++LLNL   A     +G       Q        S+   G      E  
Sbjct: 633 NLMINTDAIRLKQVLLNLLNNAVKFTAQGSITLKIWQSK-TMTYLSVSDTGIGI-SKEAQ 690

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                   +       L       +  +         +  L 
Sbjct: 691 KKLFRPFAQADNSTSRQYGGTGLGLSICKKLVELMGGAIDLKSTAGQGSTFTFSLP 746


>gi|17230612|ref|NP_487160.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132215|dbj|BAB74819.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 1286

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 75/250 (30%), Gaps = 38/250 (15%)

Query: 2    AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEV 49
              N    +S+ +L           + + H++ +P+ AI    E L E         + + 
Sbjct: 880  QSNQQLAISNQELARATRLKDEFLANMSHELRTPLNAILGMTEGLQEGVFGMINNKQFKA 939

Query: 50   MQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            ++ I  SS   +  +  +         ++    T    + +    +  + +  +    +V
Sbjct: 940  LETIERSSSHLLDLINDILDVAKIEAGQIKLDCTTISVANLCESSLVFIKQQALQKRIQV 999

Query: 101  QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFS 150
            ++       DL  +     ++L+NL   A    P          +++  +   +N    +
Sbjct: 1000 EIKIPFNLPDLFVDERRIRQVLINLLNNAVKFTPEAGRISLEVTQLSPDISTVQNFLQIA 1059

Query: 151  LKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
            +   G      E   ++    +          +   +    V  +   +  R+       
Sbjct: 1060 VIDTGIGIM-QENINKLFQPFIQIDSALNRQYEGTGLGLALVKKIVELHGGRVGLTSELG 1118

Query: 205  HNVVLSALLE 214
                 +  L 
Sbjct: 1119 IGSCFTIELP 1128


>gi|313147366|ref|ZP_07809559.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136133|gb|EFR53493.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 955

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 64/230 (27%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +LL     + +  + +++ + + 
Sbjct: 569 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQADREEYMQIINTNN 628

Query: 61  IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            + LK +      +              D       +   ++  +   +   V+     +
Sbjct: 629 ELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMKQRMVNPEVRLVTINPYDV 688

Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A    P+G    +  +         +K  G      +K  
Sbjct: 689 CLVKLDRNRVAQVMTNYVTNAIKYTPKGSIE-MGYEVMDTGIRLYVKDTGIGIPEEKKNK 747

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +       +  E       +  A++ 
Sbjct: 748 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESKYHEGSLFWAIIP 797


>gi|255009587|ref|ZP_05281713.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1023

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 64/230 (27%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +LL     + +  + +++ + + 
Sbjct: 637 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQADREEYMQIINTNN 696

Query: 61  IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            + LK +      +              D       +   ++  +   +   V+     +
Sbjct: 697 ELLLKLINDILDLSKLESGSVELKYEDFDLAEYFNGMASSMKQRMVNPEVRLVTINPYDV 756

Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A    P+G    +  +         +K  G      +K  
Sbjct: 757 CLVKLDRNRVAQVMTNYVTNAIKYTPKGSIE-MGYEVMDTGIRLYVKDTGIGIPEEKKNK 815

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +       +  E       +  A++ 
Sbjct: 816 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESKYHEGSLFWAIIP 865


>gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 1143

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 61/240 (25%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +  + +   + + H+I +PI  I   L+LL    +  +    + ++  S 
Sbjct: 758 LKKAKEQAEEASRVKSGFLASMSHEIRTPINGIMGMLQLLQTADLNADQASFVDMAVRSC 817

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
              ++ +     ++             +        + ++       +       +  + 
Sbjct: 818 DRLVRLLSDIMDFSRIEAGKLTIQSAPMSLESVFSHVRELFTPLSGSNGVVLDFTLDPAL 877

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLAR 159
               +  +    +IL NL   A      G     +              F +   G    
Sbjct: 878 PDRILGDAFRLQQILNNLVDNACKFTTSGRITVQAWNLTAVEPRTVRVFFEVSDTGIGIP 937

Query: 160 FPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +   ++ D  ++       +     +       L       +            +  L
Sbjct: 938 DEDLR-RLFDPFIQLCDGYVRSHKGVGLGLSICKRLVELMGGGMSVTSEAGKGTTFAFSL 996


>gi|167828470|ref|ZP_02459941.1| two-component sensor kinase protein [Burkholderia pseudomallei 9]
 gi|226199125|ref|ZP_03794687.1| sensory box histidine kinase [Burkholderia pseudomallei Pakistan 9]
 gi|225928900|gb|EEH24925.1| sensory box histidine kinase [Burkholderia pseudomallei Pakistan 9]
          Length = 723

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598

Query: 117 ----KILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRSKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709


>gi|149918850|ref|ZP_01907336.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149820224|gb|EDM79641.1| sensor histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 422

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 65/253 (25%), Gaps = 40/253 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + I        L +   + + H++ +P+ +I    E+L +        +    ++M  
Sbjct: 164 LERAIAHLRDVDQLKSNFLATVSHELRTPLTSIIGFSEMLAKGIAGPLNEEQTEYANMIL 223

Query: 61  II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-----------EDFIAVDKRVQV 102
                      + + ++    G+V   +    +  V+           +       R   
Sbjct: 224 DRGEELLRLITQILEMSKMEMGTVRLKLRPTPLADVVGRAFGSAVIPADRAHVNLVRDFA 283

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNEN 147
                 +    +  ++L+NL                      + R  +     ++  +  
Sbjct: 284 DDLPLMLVDPDKVLQVLINLVTNGIKFNRPDGHVAVRAELAPIRRPFEEDFFGEEVADAM 343

Query: 148 IFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEI 201
             S+   G      +   +I D                 +    V  L   +   +  E 
Sbjct: 344 RVSVSDTGIGIPEDQL-ARIFDAFYQVDSSSTREHGGAGLGLSIVKKLIEAHGGEIWAES 402

Query: 202 IDDHNVVLSALLE 214
           I          L 
Sbjct: 403 IVGVGTTFHFTLP 415


>gi|39997026|ref|NP_952977.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983914|gb|AAR35304.1| sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 793

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           ++K      S+    +   + + H+I +P+  +   + LL E  ++ +  +   +   S 
Sbjct: 272 LSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDLQAKQREYAEIIRSSG 331

Query: 61  IIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            + ++                 M         V   +     E+  +  + ++  +    
Sbjct: 332 ELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFLEYSMAGEV 391

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFP 161
               +       ++L NL   A     +G          +         +   G      
Sbjct: 392 PDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVRGSVEGGVCRLSCIVSDTGIGI-PQ 450

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +   ++                   +    V  L       +  +       V    
Sbjct: 451 DMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDSEPGCGSVFRFT 507


>gi|32474484|ref|NP_867478.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32445022|emb|CAD75024.1| probable sensory transduction histidine kinase [Rhodopirellula
           baltica SH 1]
          Length = 304

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 19/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQL 52
           A+         +L   L   + H+I +P+  IH +++LL E  +E            + +
Sbjct: 71  AEMREARGQYEELA-ELAGSLAHEIKNPLSIIHMNIDLLSEDLMEIDSPSSRRCQNRVDM 129

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWT 105
           +R         L+                 L D  Q + D             +  +   
Sbjct: 130 VRNQCERMEGLLRDFLRFARLRHIDLVPGSLNDQIQQVLDAYQAQADSQDVELQRYLDPD 189

Query: 106 GEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              I L  +  +  L+NL   A  ++P GG++      ++      L   G         
Sbjct: 190 LPSIRLHSDALQSALMNLVKNALEAMPDGGQLWARTYSTRGGVNLDLIDTGTGVDDNTVL 249

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +      +       +   +  R+  +         S    
Sbjct: 250 -HMFEPFYSTKDGGSGLGLPTARKIIEAHGARISVQSETGRGTKFSLQFP 298


>gi|15613951|ref|NP_242254.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174004|dbj|BAB05107.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 368

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 62/215 (28%), Gaps = 11/215 (5%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM-- 67
             M+ V+ + + + H++ +P+  I   L+L        +    I          ++    
Sbjct: 152 HQMEAVSHIAAGVAHELRNPLSVIKGFLQLSQLTDGFSKYYDTIMSELNRMNGIIEDFLS 211

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-TGEKIDLSRERAKILLNL 122
               ++          +  L +I +       V   + +   +           +++LNL
Sbjct: 212 VSRKKIERKAQSPKKIMDSLTEIIKSECLLHNVSFEIDLQPTSKMVYVNESMIKQVILNL 271

Query: 123 FMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
              +  +           +     ++E + +++ NG      E   Q+      +     
Sbjct: 272 LRNSIEAFGDAKIDRLFRVQAIPKEHEYVLTVEDNGKGM-TKEVLAQLGKPFFTTKDRGT 330

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I       +  ++      E        ++  L 
Sbjct: 331 GIGIPLCKKIIEDHNGTFQIESERYKGTKVTIRLP 365


>gi|150015596|ref|YP_001307850.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
 gi|149902061|gb|ABR32894.1| histidine kinase [Clostridium beijerinckii NCIMB 8052]
          Length = 781

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 27/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +S    +   + + H+I +P+  I     LL+   + DE + ++++   S+ 
Sbjct: 397 AKEEAERANSAK--SQFLANMSHEIRTPMNGIMGMTSLLEFSKLTDEQIDIVKMIETSSK 454

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L+ +      +      I L      I + +   + +                  +  
Sbjct: 455 HLLQIINDILDLSVMDVGKIELKPERINIFNLMNESRNLFTYLAENKGLKLEIIVDNNLP 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
            E I       ++L NL   A     +G       +        + +FS+K  G   +  
Sbjct: 515 NEIILDKGRLMQVLSNLIGNAIKFTEKGKIQVSVDKVEDKENKVKLMFSVKDTGIGIKEE 574

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +                       +       +       +  E            
Sbjct: 575 DIPRLFNYFTQLDISASKKFQGTGLGLAISKNIVELMGGEISVESQYGKGSTFYFT 630


>gi|325122525|gb|ADY82048.1| sensory kinase (soluble) in two-component regulatory system
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 369

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +    +   L   + H+I +P+  I  + +LL     +    +   +       
Sbjct: 126 SKEENLVQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLNDKSYAEFTDVIINEVDR 185

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                    G         V+    L  +  +I +      ++   +     D++ +R +
Sbjct: 186 LTNLADTMLGSRQLPSYENVNVHEPLERVRSLIANQTKKKIKIIRDYDLSLPDVNADRDQ 245

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKN---------------------ENIFSLKINGN 156
           ++  +  ++  ++    +      D +                           ++ NG 
Sbjct: 246 LIQVMLNISVNAIQAITENKAFFIDHEPELILRTRIQRLVTINGVLNRSTVRVDIEDNGP 305

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V        +       + H++   +  + +     + S  L 
Sbjct: 306 GIPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGK-TIFSLYLP 361


>gi|308275109|emb|CBX31708.1| hypothetical protein N47_E52200 [uncultured Desulfobacterium sp.]
          Length = 1266

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 35/246 (14%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K +       ++         + + H+I +P+  I  + ELL    I D+    +R+ 
Sbjct: 502 LEKELIKAKEKAEVATGAKDEFLANMSHEIRTPMNGIIAASELLSNEDISDKAKHYLRII 561

Query: 57  SMSAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           + SA   L+               + L        D +  L ++         ++  V +
Sbjct: 562 TTSAYSLLEIINDILDVSKIEAGKLDLEIRDFKIEDVIDKLVNMFFHRTSKKFIELLVDI 621

Query: 103 SWTGEK--IDLSRERAKILLNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLK 152
                +          +IL+NL   A     +              S +  + +  F +K
Sbjct: 622 DPEIPRALRGDELRLYQILVNLVSNAVKFTKKGGIIIVGVKELENRSAESGEVKLRFFIK 681

Query: 153 INGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             G      E   +I +                 +       L       +  E   +  
Sbjct: 682 DTGIGI-AHENIEKIFEPFSQADASTTRNYGGTGLGLCICKQLVEMMGGEIRVESEPEKG 740

Query: 207 VVLSAL 212
              S  
Sbjct: 741 STFSFT 746


>gi|301055499|ref|YP_003793710.1| transmembrane sensor histidine kinase [Bacillus anthracis CI]
 gi|300377668|gb|ADK06572.1| transmembrane sensor histidine kinase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 424

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|229098474|ref|ZP_04229417.1| hypothetical protein bcere0020_37050 [Bacillus cereus Rock3-29]
 gi|228684945|gb|EEL38880.1| hypothetical protein bcere0020_37050 [Bacillus cereus Rock3-29]
          Length = 424

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEEMKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAVQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|229104612|ref|ZP_04235275.1| hypothetical protein bcere0019_37550 [Bacillus cereus Rock3-28]
 gi|228678808|gb|EEL33022.1| hypothetical protein bcere0019_37550 [Bacillus cereus Rock3-28]
          Length = 424

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEEMKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAVQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|229117501|ref|ZP_04246874.1| hypothetical protein bcere0017_37760 [Bacillus cereus Rock1-3]
 gi|228665954|gb|EEL21423.1| hypothetical protein bcere0017_37760 [Bacillus cereus Rock1-3]
          Length = 424

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 66/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEEMKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAVQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|221234751|ref|YP_002517187.1| nitrogen regulation protein ntrB [Caulobacter crescentus NA1000]
 gi|220963923|gb|ACL95279.1| nitrogen regulation protein ntrB [Caulobacter crescentus NA1000]
          Length = 373

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 58/221 (26%), Gaps = 29/221 (13%)

Query: 21  RICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            + H+I +P+  I  + +LL       +  +   ++               F   A    
Sbjct: 143 MLAHEIKNPLAGIRGAAQLLKTGASAVDQPLAQLIVDETDRIRRLVDRMEAFSEQAPTMR 202

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLP 131
             V+    L  +  ++ + +A    ++ S+      +  +     +I LNL   A  +  
Sbjct: 203 EPVNIHQVLDRVRALVANGVADGLTLKESYDPSLPPVWGDEDHLIQIFLNLMKNAAEAAH 262

Query: 132 RGGKVTISVQDSKNE------------------NIFSLKINGNLARFPEKFTQIVDGNVE 173
             G     +                            +  NG           +    V 
Sbjct: 263 MRGDDRGVLSIHTAWRPGVRVRGADGKATSGAPIEVRVIDNGPGVPAT-LRDHLFQPFVT 321

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +   +    V  L   +   +  E       V   LL 
Sbjct: 322 TKSNGTGLGLALVTKLVTAHGGLIDFESEPGR-TVFRVLLP 361


>gi|220929310|ref|YP_002506219.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999638|gb|ACL76239.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 508

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 80/238 (33%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A++    +  +    +L     + + H++ +P+ +I   +E + +       +   + +
Sbjct: 262 LAESFNNMVEDLQRLEELRRGFIANVSHELRTPMTSIRGFIEGILDGTIPPEKQRGYLTI 321

Query: 53  IRLSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVS 103
           +R  +      +  +                  D    +      +     + + +++ +
Sbjct: 322 VRDETNRLNRLVNDLLDLARMESGELTLSMKPFDINELIRICVIKLETLITSKNLQIEAN 381

Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  + + +  ++    ++++NL   A       GK+ +    +K +   S+K NG     
Sbjct: 382 FDVDSMMVLADKDSIERVIINLLHNAVKFSNENGKIIVETAKNKEKVFISVKDNGIGIDS 441

Query: 161 PE---KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    + +    +     D     +    V  +  E+K  +L E         +  L
Sbjct: 442 DDKKRIWDRFYKSDKSRGKDKTGTGLGLAIVKNILTEHKQDILLESDVGKGTKFTFTL 499


>gi|218528744|ref|YP_002419560.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
 gi|218521047|gb|ACK81632.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium chloromethanicum CM4]
          Length = 646

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
           + +       + ++     + + H++ +P+ AI    ++L   G      +   +   + 
Sbjct: 337 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGII 396

Query: 57  SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + S    L  +                    VD    +     ++            S  
Sbjct: 397 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAP 456

Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   ++L+NL   A    PRGG+V + V+         +  +G      
Sbjct: 457 VPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEA 516

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++ D   +       + +   +    V  LA  +   +  E        ++  L 
Sbjct: 517 DLP-RLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 574


>gi|167769054|ref|ZP_02441107.1| hypothetical protein ANACOL_00377 [Anaerotruncus colihominis DSM
           17241]
 gi|167668694|gb|EDS12824.1| hypothetical protein ANACOL_00377 [Anaerotruncus colihominis DSM
           17241]
          Length = 901

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 59/233 (25%), Gaps = 23/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSA 60
                     L A L   + HD+ +P+  I  S  +L +      +    +L        
Sbjct: 662 QAALQAQKEHLQANLLRAVSHDLRTPLTNISGSASILMQKECPLDDAAKERLYTGIYDDT 721

Query: 61  IIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +         T               L  +        D  A +  + +      + 
Sbjct: 722 NWLISMTENLLAATHLEADKGALPMEPQLLEDIFQSAATQLDRRAREHNISIVLQDPMLM 781

Query: 111 LSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       ++++N+   A    P G  + +S +   +    S+  +G      E    +
Sbjct: 782 ANINAKLILRVIINIMNNAIQYTPNGSHIVLSGERKGDMVEVSISDDGPGI-PDEAKKHL 840

Query: 168 VDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +            +       +  ++  ++          V    L 
Sbjct: 841 FDLFYTAEQGRSDCQRGLGLGLNLCRSIIAQHNGQITVSDNRPSGTVFRFTLP 893


>gi|167760790|ref|ZP_02432917.1| hypothetical protein CLOSCI_03175 [Clostridium scindens ATCC 35704]
 gi|167661677|gb|EDS05807.1| hypothetical protein CLOSCI_03175 [Clostridium scindens ATCC 35704]
          Length = 468

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 61/219 (27%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + HD  SP+ +I   +E + +      + ++ +++I   +       + +     +
Sbjct: 249 FVANVSHDFRSPLTSIKGYVEAMTDGTIPPEMHEKYLKIILFETERLTDLTQDLLTLNEF 308

Query: 74  TGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRERAKILLN 121
                        +  +        +     K++ +               R+  ++L N
Sbjct: 309 DTKNILLTKEVFDIHEMIKNVAAAFEGTCTQKKISIELIFATKYLNVTADKRKIQQVLYN 368

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID- 177
           L   A         VTI   +  ++   S+K  G           + +    ++    D 
Sbjct: 369 LLDNAIKFSETDSTVTIETTERGDKIYTSVKDYGIGIPRNALNKIWERFYKTDLSRGKDK 428

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V      +   +     +         L K
Sbjct: 429 KGTGLGLAIVKEAIQAHGENINVVSTEGVGTEFIFSLPK 467


>gi|220924453|ref|YP_002499755.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
 gi|219949060|gb|ACL59452.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
            2060]
          Length = 1350

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 55/250 (22%), Gaps = 38/250 (15%)

Query: 2    AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELL-DEVGIEDEVMQL 52
             +     L      A   SR        + H+I +P+  I    +LL ++  + +   + 
Sbjct: 838  RQQQAEALEQARDAAEQASRAKTDFLALMSHEIRTPLNGILGYTDLLLEDATLGEGQRRQ 897

Query: 53   IRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
                  +                       +        ++           V +  IA+
Sbjct: 898  AERIQSAGAALLTIVNDILDFSKIEAGQVELDPRPFLLDALVDNTISVVRGFVGKKAIAI 957

Query: 97   DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLK 152
               V        +       ++LLNL   A      G                   FS+ 
Sbjct: 958  STVVDPDVPRTLVGDQDRLRQVLLNLLNNAVKFTHAGSVTLSVSCLEPAGATAALRFSVT 1017

Query: 153  INGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G      +K  ++     +             +       L       +  E      
Sbjct: 1018 DTGIGI-PEDKRGRLFQRFSQLDSSIGRDFGGTGLGLAISKNLVELMGGTIDVESEVSKG 1076

Query: 207  VV--LSALLE 214
                 +  L 
Sbjct: 1077 TTFWFTVTLP 1086


>gi|218783087|ref|YP_002434405.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764471|gb|ACL06937.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 801

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L +  + A+  L   + HD  + + ++    EL    +D  G   E +  I  ++ 
Sbjct: 416 EQMLLHAQKMKAIGTLAGGVAHDFNNILTSVRAYTELAQFRIDNQGAVQESLDQIMNATD 475

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------WTGEKIDL 111
            A   +K +      TG     + LG + +     +       +        W       
Sbjct: 476 RAKEMVKQILNFSRQTGEEKKPVQLGPVIKEAVTLLKAALPSTIDVVMALKEWECIIHAD 535

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----------------KNENIFSLKING 155
           + +  +I++NL   A  ++ + G +                        N     ++  G
Sbjct: 536 ATQVHQIIMNLGTNAAHAMVQSGGILHFSMIREEVDRKTAAKIPELKSGNYIKLRVQDTG 595

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE    I D    +        +    V  +  ++   ++ +       +     
Sbjct: 596 CGM-EPEVMKHIFDPYYTTRETGKGSGMGLAVVYGIVKQHGGAIVVKSKPGKGTLFDVYF 654

Query: 214 E 214
            
Sbjct: 655 P 655


>gi|111220169|ref|YP_710963.1| putative sensor histidine kinase [Frankia alni ACN14a]
 gi|111147701|emb|CAJ59358.1| Putative Sensor histidine kinase [Frankia alni ACN14a]
          Length = 648

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 64/218 (29%), Gaps = 20/218 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              + + H++ +P+ AI    EL               M  +   S      +  + L  
Sbjct: 356 QFLADVSHELRTPLAAISGYAELTRRTREPVPPDVTYAMSRVESESARMTALVSDLLLLA 415

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------TGEKIDLSRERAKILLNL 122
                        DI +++ D ++                         +    ++L NL
Sbjct: 416 RLDSGRPLEHEPVDISRMVVDAVSDAHVAAPDHRFALDLPEEPVTVTGDAARLHQVLANL 475

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN--VESTID 177
              A A  P G +VT S+  + +E   ++  +G        PE F +   G+        
Sbjct: 476 LANARAHTPPGTRVTASLAVTDDEVTVAIVDDGPGIPADLLPEVFERFARGDSSRSRAAG 535

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           S  +    V  +   ++ R+               L +
Sbjct: 536 STGLGLAIVAAVVEAHQGRVEATSQPGR-TAFVVTLPR 572


>gi|16125984|ref|NP_420548.1| nitrogen regulation protein NR(II) [Caulobacter crescentus CB15]
 gi|13423160|gb|AAK23716.1| nitrogen regulation protein NR(II) [Caulobacter crescentus CB15]
          Length = 363

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 58/221 (26%), Gaps = 29/221 (13%)

Query: 21  RICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            + H+I +P+  I  + +LL       +  +   ++               F   A    
Sbjct: 133 MLAHEIKNPLAGIRGAAQLLKTGASAVDQPLAQLIVDETDRIRRLVDRMEAFSEQAPTMR 192

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLP 131
             V+    L  +  ++ + +A    ++ S+      +  +     +I LNL   A  +  
Sbjct: 193 EPVNIHQVLDRVRALVANGVADGLTLKESYDPSLPPVWGDEDHLIQIFLNLMKNAAEAAH 252

Query: 132 RGGKVTISVQDSKNE------------------NIFSLKINGNLARFPEKFTQIVDGNVE 173
             G     +                            +  NG           +    V 
Sbjct: 253 MRGDDRGVLSIHTAWRPGVRVRGADGKATSGAPIEVRVIDNGPGVPAT-LRDHLFQPFVT 311

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +   +    V  L   +   +  E       V   LL 
Sbjct: 312 TKSNGTGLGLALVTKLVTAHGGLIDFESEPGR-TVFRVLLP 351


>gi|17227924|ref|NP_484472.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129773|dbj|BAB72386.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 637

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----------VGIEDEV 49
           + + +       +L A   S +CH   +P+  +  S  LL               ++   
Sbjct: 402 LTQALEQAKHLGELRASFLSMVCHQFRNPLNIVSFSNSLLKRYLNAQTEETIQPLLDQVQ 461

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           + + +L+ M   + L     A            +     VI           +++  +  
Sbjct: 462 LSIQQLNQMLDDMLLFAKTEAAKLKFEPSRFEIVEFCNDVISQMQMAHFPNYINFISQTE 521

Query: 110 DLSRERAK-----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            L+    K     IL NL   A    P G  V + +  +  + IF +K +G      +  
Sbjct: 522 YLTVWMDKNILDSILKNLIDNAIKYSPLGSMVELRLLGNNEKIIFQVKDDGIGISTLD-Q 580

Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +          I    +    V  L   +  ++  E         + +L 
Sbjct: 581 KRLFEPFYRGKNVDNIPGTGLGLSIVKTLVDLHGGQVAVESKVGVGTTFTVVLP 634


>gi|307297187|ref|ZP_07577000.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
 gi|306877411|gb|EFN08642.1| multi-sensor hybrid histidine kinase [Sphingobium chlorophenolicum
           L-1]
          Length = 914

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 69/237 (29%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AKN     +     +   + + H+I +P+  +  + ELL++  +     + + + + SA 
Sbjct: 382 AKNRAEEATRAK--SQFLANMSHEIRTPMNGVIGAAELLNDTRLNASQREYLTMITQSAD 439

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSWT 105
             L  +     ++      + L  +   + D                 I +   V +   
Sbjct: 440 ALLHLINDILDFSKIEAGRLELEHVAFSLRDELADTLQAFAGRATEKGIELACHVALDVP 499

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFP 161
                      ++++NL   A     RG  V       ++D +    F++   G      
Sbjct: 500 DALEGDPHRLRQVVINLVGNALRFTERGEVVMDVAVERMEDQQAWLRFAVSDTGPGIAAD 559

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           ++          D +         +       L      RL  +       V    +
Sbjct: 560 KRKLIFEAFSQADTSFTRRFGGTGLGLTIASQLVQLMGGRLELDSCVGRGSVFHFTI 616


>gi|304406984|ref|ZP_07388638.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
 gi|304343971|gb|EFM09811.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus curdlanolyticus YK9]
          Length = 482

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 65/244 (26%), Gaps = 32/244 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLI 53
           +++        L     + + H+I +P+  +    E +         +   +   +    
Sbjct: 231 RDVTEEFKLEKLRRDFVANVSHEIRTPLSMLQGYSEAILDGFADSPEERDELVQVIHDES 290

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEK 108
                     L   R+  G+T        + +       + +      D R+      + 
Sbjct: 291 VRMGRLVKDLLDLARMEAGHTELKLMPCDIDNLVKRVHRKFLTFAKERDIRLVCELPEQH 350

Query: 109 IDLS----RERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKINGN 156
           + +         ++L NL   A    P G  +T+S +                 +K  G 
Sbjct: 351 LFMESADEDRLEQVLTNLLDNALRHTPAGAVITVSGKMRAEELGRSEPAYVELQIKDEGE 410

Query: 157 LARFPE---KFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                +    F +    +            +    V  +   ++  +  + +       +
Sbjct: 411 GIPAEDLPYIFERFYKADKSRKRGSSSGTGLGLAIVKNIVESHEGHIHVDSLVGKGTTFT 470

Query: 211 ALLE 214
            LL 
Sbjct: 471 LLLP 474


>gi|269967809|ref|ZP_06181855.1| sensor protein TorS [Vibrio alginolyticus 40B]
 gi|269827585|gb|EEZ81873.1| sensor protein TorS [Vibrio alginolyticus 40B]
          Length = 895

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPIQKRYAEIINRSGK 516

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +                     D    + D  Q++              ++   +
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVS 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A      G          + +++ +F +   G       +
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQ 636

Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T            S      +       +       L  +  + +       + 
Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIP 691


>gi|256830476|ref|YP_003159204.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579652|gb|ACU90788.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 564

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 64/218 (29%), Gaps = 14/218 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAIIR 63
            +  L A+  + + + H+I +P+ A+    +     L     E+   + +   +      
Sbjct: 340 RNEKLAAIGRMAAGVAHEIRNPLSALRGFAQFFAKKLAGRDPEELYARTMVQEADRLNRV 399

Query: 64  LKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +  +               +  +         ++      +    + T           +
Sbjct: 400 ITDLLFLARPRQLSFAQVPLAEIFREVHTLLSMDAGARNGRLEHWTDTETVQADRDALKQ 459

Query: 118 ILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            ++NL M +  +LP    +     + + +     ++ NG      E+   + +    +  
Sbjct: 460 AVINLLMNSVEALPGEEGLIELWAEGNDDGTWIRVRDNGAGMSPEEREHAL-EPFFTTRD 518

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +  E+   +  E       V+S    
Sbjct: 519 KGTGLGLAIVHTIMQEHGGLIQIETPTAGGTVVSLFFP 556


>gi|225165722|ref|ZP_03727518.1| Histidine kinase [Opitutaceae bacterium TAV2]
 gi|224800031|gb|EEG18464.1| Histidine kinase [Opitutaceae bacterium TAV2]
          Length = 508

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 55/219 (25%), Gaps = 23/219 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           +   + + H+I +P+  +    +LL +  +    M+ + L + S                
Sbjct: 137 SRFLAMMSHEIRTPMNGVIGFTQLLRDTPLNPRQMEYVDLITRSGQSLLVIIDDILDYSK 196

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  +  A      +             +  I +D  +        I  +    +I+
Sbjct: 197 VSAGHLQLERAPCELRRLIEQHIQLLHTGARQKNITIDLHIDPLVPSLIIGDAVRIGQIV 256

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173
            NL   A      GG     V D        +   G     PE   +I +          
Sbjct: 257 SNLVSNAIKFTHHGGVHIHLVPDGPRCLALHVTDTGIGI-PPEAHRRIFEPFSQADGSTT 315

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  +      LL       L       H    +A 
Sbjct: 316 RRYGGTGLGLPITRLLCTLMGGTLTLSSQPGHGSTFTAT 354


>gi|254453386|ref|ZP_05066823.1| periplasmic sensor signal transduction histidine kinase
           [Octadecabacter antarcticus 238]
 gi|198267792|gb|EDY92062.1| periplasmic sensor signal transduction histidine kinase
           [Octadecabacter antarcticus 238]
          Length = 567

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQ------LIRLSS 57
            +  L AL  + + + H++  P+ A+   L     L+     ++ V+       LI   +
Sbjct: 333 QTSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLIARERPDEAVVAVQRIDGLIERMA 392

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSR 113
                   + R        VD    +     ++E  +   + +                 
Sbjct: 393 AITKQLKSYARKGKDSLEPVDIKDAVLSSLSMMEPQLRQRQVIITRTLPDQPVMIYGDRM 452

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +     + ++ +     +    S++ NG+     E   ++ +   
Sbjct: 453 RLEQVIINLLRNALDATKMALEPSVEILLVQGDVARLSVRDNGSGI---EDLDELFEPFY 509

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    D   +       + ++   RL     D    V    L 
Sbjct: 510 TTKQAGDGTGLGLAISSGIVNDFGGRLTARNSDKGGAVFEVELP 553


>gi|91227910|ref|ZP_01262049.1| sensor protein TorS [Vibrio alginolyticus 12G01]
 gi|91188319|gb|EAS74616.1| sensor protein TorS [Vibrio alginolyticus 12G01]
          Length = 987

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPIQKRYAEIINRSGK 516

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +                     D    + D  Q++              ++   +
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRHMGFDLHQMVEDTFQLMNSRAQEKKLLFSYHIESDVS 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A      G          + +++ +F +   G       +
Sbjct: 577 RYWKGDVTRISQVLNNLVGNAIKFTDEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKYQ 636

Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T            S      +       +       L  +  + +       + 
Sbjct: 637 RTLFDAFTQAEGGMSQTGGTGLGLAISKRIIEAMGGVLEVDSEEGNGSRFWFSIP 691


>gi|86156931|ref|YP_463716.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773442|gb|ABC80279.1| periplasmic sensor signal transduction histidine kinase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 414

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 61/205 (29%), Gaps = 9/205 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIR-LKFMRLA 70
           + + + H+I +P+G I  + EL+           + E +  +             F+ LA
Sbjct: 207 MAAMVAHEIRNPLGVIRGAAELVRARSGAALAPRDVEALGDVLGEVERLRRLTDDFLDLA 266

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS- 129
                + +         +           V+V+ +   + +  + A++   L  +   + 
Sbjct: 267 RDPAIAAEPADLAELAAEAARALGRAHPAVEVALSVPPLRVRADAARVRQVLANLLENAA 326

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
           L    +V ++   +       ++ +G      +   ++ +           +       +
Sbjct: 327 LAGARRVAVTAGPAGPMARVEVRDDGPGV-DADLRARLFEPFASGRARGAGLGLAISRRI 385

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
           A  +   L            +  L 
Sbjct: 386 AERHGGALELADPGPPGAAFALTLP 410


>gi|37523305|ref|NP_926682.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214309|dbj|BAC91677.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 910

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 60/218 (27%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---------------RL 64
           + + H++ +P+ AI    ++L    ++ E       +                       
Sbjct: 679 ATVSHELRTPLNAILGWTQILRRRKLDAESQARALETIERNGRAQNQLIEDILDVSRIIT 738

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-ERAKILLNLF 123
             ++L          +    D   +  +   +     +      +        +++ NL 
Sbjct: 739 GKLKLDVRPLDLAAVIEEALDSVCLASEAKHIALHCTLDAEAASVSGDPARLQQVVWNLL 798

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGNVESTIDS 178
             A    P GG++ + +       + S++ +G            +  +  DG+       
Sbjct: 799 SNAIKFTPEGGRIDVRLAADGASALLSVRDSGVGITPEALPYIFERFRQADGSNTRAFGG 858

Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLEK 215
             +    V  L   +   +           + +  L +
Sbjct: 859 LGLGLAIVRHLVELHGGTVTAHSDGPGRGALFAVRLPR 896


>gi|329962433|ref|ZP_08300433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328529989|gb|EGF56877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1481

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 25/234 (10%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDE---VMQLIRLSSMS 59
            ++   +S + L     + + H++ +P+  I   +E +L    +  E    + L+  ++  
Sbjct: 932  SVEQQISDIKLR--FFTNVSHELRTPLTLIAGPIEQILQNGHLNHEEKEQLSLVERNTSR 989

Query: 60   AIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGE 107
             +  +  +              V  +  +     ++E F  +    Q+ +       +  
Sbjct: 990  MLRLVNQILDFRKIQNNKMKMRVQQIDLIPFTRHIMESFNYLADEHQIDFGLKTELASLH 1049

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                + +  KIL NL   A    P+G ++   + +++ E   +++  G      +K   +
Sbjct: 1050 IWADTDKLEKILFNLLSNAFKYTPQGKQIKTVITETETEVAVTVEDQGIGI-AEDKQKSL 1108

Query: 168  VDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            S  I    V  L   +   +            +  L K
Sbjct: 1109 FVRFENLMDKNLFNQSSTGIGLSLVKELVEMHHGHISLHSHPGEGSRFTIRLPK 1162


>gi|284166174|ref|YP_003404453.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015829|gb|ADB61780.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 642

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 56/231 (24%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            + +  +   ++  A   S   HD+  P+  + + L+LL+           +E +     
Sbjct: 408 ERALEESNERLEQFAYAAS---HDLQEPLRMVSSYLQLLERRYADEFDEDGEEFLDYAVD 464

Query: 56  SSMSAIIRLKFMRLAFG------YTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEK 108
            +      +  +               VD    L D+   +       D  V+       
Sbjct: 465 GAERMREMIDGLLAYSRVETRGDPFEPVDLDCLLEDVLDDLSLQLEETDAEVETEPLPRV 524

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE---K 163
              + +  ++  NL   A                Q        S+   G      +    
Sbjct: 525 RGDASQLRQVFQNLLANALEYSGPEPPRVHLEAAQREGAMWEVSVVDEGIGIDPEDQDRV 584

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F      +     D   I       +   +   +  E         S  L 
Sbjct: 585 FDVFQRLHSREEYDGTGIGLALCERIVERHDGEIWVESEPGEGSTFSVTLP 635


>gi|316931662|ref|YP_004106644.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
 gi|315599376|gb|ADU41911.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris DX-1]
          Length = 590

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 61/246 (24%), Gaps = 35/246 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  ++   + +++      + + H++ +P+ ++ +++E L     ++   +L+ +     
Sbjct: 346 MTDSLYNRIEAIE---RFAADVSHELKNPLTSLRSAVETLPLAKTDNSRARLLSVIEHDV 402

Query: 61  IIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                 +               +   +        + V      
Sbjct: 403 KRLDRLISDISDASRLDAELQRQDAAQVDLRRLLTTLTLVANETRLGHSTMVEVKFDGPA 462

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           S             +++ NL   A +    GGKV I  +  K E    ++  G   R   
Sbjct: 463 SDQFSVPGHDSRLGQVISNLLSNAQSFSCEGGKVRILCRRRKAEIEIIVEDEGPGIREDA 522

Query: 163 KFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNVV 208
                     +           +       +   +  R+  E                  
Sbjct: 523 LEKIFERFYTDRPHQGFGQNSGLGLSISKQIVEAHGGRIWAENRVGPRGEDGEPTVAGAR 582

Query: 209 LSALLE 214
               L 
Sbjct: 583 FVVRLP 588


>gi|297568693|ref|YP_003690037.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924608|gb|ADH85418.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 536

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 70/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICF-----NLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQ 51
           M +             ++ V ++   I HD  + + A++  + L    L         + 
Sbjct: 271 MEEQQALHRRFFQQQKLESVGVMAGGIAHDFNNLLTALYGQISLAELSLPADHPARAHLS 330

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----G 106
           L   S+  A    + +             + L  +      F       ++ ++      
Sbjct: 331 LAEGSANRARFLTRQLLTFTTGNHLHRRPLTLSRLLPETARFALTGSNCELQFSADEDLW 390

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKIN 154
                  +   +  NL + A  ++   G++TIS ++                     + N
Sbjct: 391 PTELDPEQMGNVFHNLVLNARDAMGDNGELTISCRNLELPADTRLPLPPGRYVRIVFQDN 450

Query: 155 GNLARFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           G     PE  ++I D    +          +       + +++   +  + +     V +
Sbjct: 451 GCGM-EPEVLSRIFDPYFSTKEKSSRKGTGLGLAICYSVINQHGGHIEVDSVKGQGTVFT 509

Query: 211 ALLE 214
             L 
Sbjct: 510 LYLP 513


>gi|153853515|ref|ZP_01994895.1| hypothetical protein DORLON_00884 [Dorea longicatena DSM 13814]
 gi|149753670|gb|EDM63601.1| hypothetical protein DORLON_00884 [Dorea longicatena DSM 13814]
          Length = 497

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           +  +    L        L S I HD+ +P+  I    E + +        I+  V  +  
Sbjct: 251 LKDSAEEKLKYDKESKELISNISHDLKTPVTTIKGYAEGIIDGVADTPEKIDRYVRTIYN 310

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQV 102
            ++    +  +    +   T  +     +    +   D                     V
Sbjct: 311 KATEMNTLINELTLYSKIDTNKIPYNFNIVSANEYFNDCADDLSVELAAQNVGFGYFNYV 370

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                 I    +  +++ N+   +   + +    + + V+D  +     L+ NG      
Sbjct: 371 EKNVRIIADPEQVKRVIHNIVNNSLKYMDKPKGMINLRVKDVGDFVQIELEDNGKGIAAK 430

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           I    V  +  E+  ++     ++    +  +L K
Sbjct: 431 DLPNIFDRFYRTDASRNSSTGGSGIGLSVVKKIVEEHGGKIWATSREETGTTMYFVLRK 489


>gi|126731549|ref|ZP_01747355.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
 gi|126708085|gb|EBA07145.1| sensory box histidine kinase/response regulator [Sagittula stellata
           E-37]
          Length = 886

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     ++     A L + + H++ +P+  I  +LELL+   +  E  + +R+   S+
Sbjct: 351 LRRARDRAVAGEKQKAELLAVMSHEMRTPLNGILGTLELLEADSLPAEDQRYLRIIRQSS 410

Query: 61  IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
            I L  +                     D +  L +I +   D       +         
Sbjct: 411 EILLGHVNEVLDISRLDAGKMTLRKTRFDLVALLEEIVESQADRARAQGNLLTLRPPNPA 470

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK 163
             E         +ILLNL   A      G  +  +  DS  +     +   G   +  + 
Sbjct: 471 LHEVYSDPDRLRQILLNLVSNAIKFTAGGRIMIEADCDSGMDDCELRVIDTGVGIKPDDL 530

Query: 164 FTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D  V              +       LA      L  E       V    L 
Sbjct: 531 -ARIFDDFVTIDSSYGRRNTGTGLGLSISQRLATALGGELGAESEPGDGSVFWLRLP 586


>gi|56420058|ref|YP_147376.1| histidine protein kinase [Geobacillus kaustophilus HTA426]
 gi|56379900|dbj|BAD75808.1| histidine protein kinase [Geobacillus kaustophilus HTA426]
          Length = 375

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 61/217 (28%), Gaps = 14/217 (6%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             + L+  + S   H+  +P+ AI   ++LL         + +I         R+     
Sbjct: 160 DRLTLLGQMSSSFVHEFRNPLTAIIGFIQLLKFEHPHLPYLDIIDHELQQLKFRISQFLH 219

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                              L  + +          VD  V +  +        +  ++L+
Sbjct: 220 ASRKEIVESEKETFSLYQLLEEIIEFLYATIVDSDVDLSVAIDESIHIFAYKDQLRQVLV 279

Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           N+ + +  ++    K        +      I  +  NG      +    I +    +   
Sbjct: 280 NILLNSIEAVKEREKPRRINIAARCQDGSIIIEIANNGPSI-PADIVETIFEPFFTTKKL 338

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I  Y    +  ++   +     DD+    S  L 
Sbjct: 339 GTGIGLYICKKVIEDHGGDICC-SSDDNMTTFSICLP 374


>gi|86146268|ref|ZP_01064593.1| hypothetical protein MED222_16191 [Vibrio sp. MED222]
 gi|85835979|gb|EAQ54112.1| hypothetical protein MED222_16191 [Vibrio sp. MED222]
          Length = 565

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 52/218 (23%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------ 65
             + I H++ +P+  +  S EL+ +  +     +++   S S                  
Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSSSQREIVNNLSQSGEFLRTIINDLLDYSKIN 267

Query: 66  --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLN 121
              + L        D    +  I         +   V V+               ++ +N
Sbjct: 268 AGMLELIPKTFALQDLKNTIDSIFTNRAIEKQIQFDVNVTDGVPSHFYGDLERITQLFVN 327

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           L   A     +G         +       ++ +G         T                
Sbjct: 328 LIGNAIKFTDQGHVSVEIKWLNDQFIFS-VEDSGVGIAQSAIKTLFEPFTQADNSSSRNY 386

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +       LA   +  +    I       +  L 
Sbjct: 387 EGTGLGLAICRKLAALMRGDIEVSSIVGSGTTFTISLP 424


>gi|145219951|ref|YP_001130660.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206115|gb|ABP37158.1| multi-sensor signal transduction histidine kinase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 597

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 63/221 (28%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKFM----- 67
             S + H++ +P+ +I    E L +  + D       +++I   S      +  +     
Sbjct: 367 FVSSVSHELRTPLTSIRGYTETLLDGAMHDAEHTEAFLRIIHQESEQLTALVNDVLDLSK 426

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
               R+ + +       +    +  +   F   D R+ +S   +   +  + + + + + 
Sbjct: 427 IESGRIEYSFAPVSLMEVVERSMSTLAPQFAKKDVRLDLSIPADLPLVRGDASYLEIVVR 486

Query: 124 M---VAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
                A   +         S           ++ NG      +   +I +          
Sbjct: 487 NLLDNAVKYVDEHNGRIRLSAAKRDGFVTLEVEDNGIGIAQKDL-DRIFERFYRVDKARS 545

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +    V  +   +K  +      +     +  L 
Sbjct: 546 RQLGGTGLGLSIVKHIVLAHKGDIKVRSRLNRGTAFTLTLP 586


>gi|30264081|ref|NP_846458.1| sporulation kinase B [Bacillus anthracis str. Ames]
 gi|47529516|ref|YP_020865.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186914|ref|YP_030166.1| sporulation kinase B [Bacillus anthracis str. Sterne]
 gi|49481643|ref|YP_038067.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|65321398|ref|ZP_00394357.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|167633550|ref|ZP_02391874.1| sporulation kinase B [Bacillus anthracis str. A0442]
 gi|167639461|ref|ZP_02397732.1| sporulation kinase B [Bacillus anthracis str. A0193]
 gi|170687306|ref|ZP_02878524.1| sporulation kinase B [Bacillus anthracis str. A0465]
 gi|170705724|ref|ZP_02896187.1| sporulation kinase B [Bacillus anthracis str. A0389]
 gi|177652687|ref|ZP_02935103.1| sporulation kinase B [Bacillus anthracis str. A0174]
 gi|190565758|ref|ZP_03018677.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I]
 gi|196035880|ref|ZP_03103282.1| sporulation kinase B [Bacillus cereus W]
 gi|218905141|ref|YP_002452975.1| sporulation kinase B [Bacillus cereus AH820]
 gi|228916646|ref|ZP_04080211.1| hypothetical protein bthur0012_38600 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228929056|ref|ZP_04092086.1| hypothetical protein bthur0010_37460 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935324|ref|ZP_04098147.1| hypothetical protein bthur0009_37750 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228947728|ref|ZP_04110015.1| hypothetical protein bthur0007_38550 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093058|ref|ZP_04224186.1| hypothetical protein bcere0021_38010 [Bacillus cereus Rock3-42]
 gi|229123530|ref|ZP_04252726.1| hypothetical protein bcere0016_38170 [Bacillus cereus 95/8201]
 gi|229600618|ref|YP_002868307.1| sporulation kinase B [Bacillus anthracis str. A0248]
 gi|254683773|ref|ZP_05147633.1| sporulation kinase B [Bacillus anthracis str. CNEVA-9066]
 gi|254721609|ref|ZP_05183398.1| sporulation kinase B [Bacillus anthracis str. A1055]
 gi|254736119|ref|ZP_05193825.1| sporulation kinase B [Bacillus anthracis str. Western North America
           USA6153]
 gi|254744009|ref|ZP_05201692.1| sporulation kinase B [Bacillus anthracis str. Kruger B]
 gi|254758098|ref|ZP_05210125.1| sporulation kinase B [Bacillus anthracis str. Australia 94]
 gi|300118636|ref|ZP_07056371.1| sporulation kinase B [Bacillus cereus SJ1]
 gi|30258726|gb|AAP27944.1| sporulation kinase B [Bacillus anthracis str. Ames]
 gi|47504664|gb|AAT33340.1| sporulation kinase B [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180841|gb|AAT56217.1| sporulation kinase B [Bacillus anthracis str. Sterne]
 gi|49333199|gb|AAT63845.1| sporulation kinase B [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|167512520|gb|EDR87895.1| sporulation kinase B [Bacillus anthracis str. A0193]
 gi|167530956|gb|EDR93643.1| sporulation kinase B [Bacillus anthracis str. A0442]
 gi|170129264|gb|EDS98128.1| sporulation kinase B [Bacillus anthracis str. A0389]
 gi|170668923|gb|EDT19668.1| sporulation kinase B [Bacillus anthracis str. A0465]
 gi|172082022|gb|EDT67090.1| sporulation kinase B [Bacillus anthracis str. A0174]
 gi|190562677|gb|EDV16643.1| sporulation kinase B [Bacillus anthracis Tsiankovskii-I]
 gi|195991529|gb|EDX55495.1| sporulation kinase B [Bacillus cereus W]
 gi|218536215|gb|ACK88613.1| sporulation kinase B [Bacillus cereus AH820]
 gi|228659927|gb|EEL15571.1| hypothetical protein bcere0016_38170 [Bacillus cereus 95/8201]
 gi|228690320|gb|EEL44109.1| hypothetical protein bcere0021_38010 [Bacillus cereus Rock3-42]
 gi|228811715|gb|EEM58049.1| hypothetical protein bthur0007_38550 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228824341|gb|EEM70150.1| hypothetical protein bthur0009_37750 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830605|gb|EEM76212.1| hypothetical protein bthur0010_37460 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228842833|gb|EEM87916.1| hypothetical protein bthur0012_38600 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|229265026|gb|ACQ46663.1| sporulation kinase B [Bacillus anthracis str. A0248]
 gi|298723963|gb|EFI64670.1| sporulation kinase B [Bacillus cereus SJ1]
          Length = 424

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|331656452|ref|ZP_08357414.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA206]
 gi|331054700|gb|EGI26709.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA206]
          Length = 350

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 128 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 187

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 188 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 247

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 248 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 306

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 307 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 341


>gi|300717614|ref|YP_003742417.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
 gi|299063450|emb|CAX60570.1| Capsular synthesis regulator component C [Erwinia billingiae Eb661]
          Length = 949

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   V  L+   
Sbjct: 453 MEESLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQGVESLVTAM 512

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 513 NNSSSLLLKIISDILDFSKIESEQLRIEPREFSPREVITHISSNYLAMVVKKRLTLWCFI 572

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           +++ NL   A       G + + V        F ++  G     
Sbjct: 573 DSDVPVTLDGDPLRLQQVISNLLNNAIKFT-HTGGIILQVFVKDGYLAFRVRDTGVGIPA 631

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +            + 
Sbjct: 632 KEIT-RLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQFVVRIP 690


>gi|254559285|ref|YP_003066380.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
 gi|254266563|emb|CAX22327.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens DM4]
          Length = 646

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
           + +       + ++     + + H++ +P+ AI    ++L   G      +   +   + 
Sbjct: 337 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGII 396

Query: 57  SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + S    L  +                    VD    +     ++            S  
Sbjct: 397 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAP 456

Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   ++L+NL   A    PRGG+V + V+         +  +G      
Sbjct: 457 VPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEA 516

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++ D   +       + +   +    V  LA  +   +  E        ++  L 
Sbjct: 517 DLP-RLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 574


>gi|227536008|ref|ZP_03966057.1| two-component sensor histidine kinase, phosphate regulation
           [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244121|gb|EEI94136.1| two-component sensor histidine kinase, phosphate regulation
           [Sphingobacterium spiritivorum ATCC 33300]
          Length = 343

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
              I    S         S I H+  +P+ AI   +E L      ++  +    +     
Sbjct: 103 KSEIDKLRSQEKFRREFLSNISHEFKTPLFAIQGYIETLQDGLIEEDPEMAKGFLDKASK 162

Query: 56  SSMSAIIRLKFMRLAF-----GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +       +  +           + +++       I++ IE+     K  ++    ++  
Sbjct: 163 NLDRLSYLIHDLDEISKLESGRISLNIEKFDLSELIKETIENLDDKAKSQKIDIVFKQKY 222

Query: 111 LS--------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
            +        ++  ++L NL   +      GG   I +     + +  +  +G       
Sbjct: 223 QNVTFVKADRKKIQQVLTNLIDNSIKYGKTGGSTDIRIFPLFEQVLVEVTDDGQGIEEKN 282

Query: 161 -PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +    +      I    +    V  +   ++  +     +         LEK
Sbjct: 283 LPRVFERFYRTDKSRSRGIGGSGLGLAIVKHIVEAHQQNVNVRSTEGIGTTFGFTLEK 340


>gi|209525035|ref|ZP_03273579.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
 gi|209494444|gb|EDZ94755.1| integral membrane sensor signal transduction histidine kinase
           [Arthrospira maxima CS-328]
          Length = 397

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           L S + H++ +PI  +   LE + E       ++ Q +   +      +  ++       
Sbjct: 176 LISDLTHELRTPITVVRGYLEEMAEGRISPSPDIYQQLTKETKRLERLINNLQELSKVES 235

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---DLSRERAKILLNLF 123
                         +    +++  +  +     +++ ++ E            +IL+NL 
Sbjct: 236 GYLPINPQPLALRPLLESLVQRFSDQLLEEGPMLELDFSEELPLALADVDRTEQILVNLL 295

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVES--TIDS 178
             A      G                 +   G        P  F +    +         
Sbjct: 296 GNAIRYTKHGLIKIEVYTH-GGYLFVDVSDTGIGISEADLPHVFERFWRADRSRSRNYGG 354

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I       L       +            +  L 
Sbjct: 355 TGIGLAITRRLVELQGGEIFVSSQLGKGSTFTFSLP 390


>gi|171909587|ref|ZP_02925057.1| multi-sensor hybrid histidine kinase [Verrucomicrobium spinosum DSM
           4136]
          Length = 957

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 67/230 (29%), Gaps = 26/230 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRL 64
             M+ V  L   + HD  + +  I     LL    I       E+   +  +S      L
Sbjct: 576 QKMEAVGQLAGGVAHDFNNILTVIQGYASLLQSGHISPADGVREISASVERASSLTRQLL 635

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121
            F R        +D  + + ++  ++   +     + V        +  +     +I+LN
Sbjct: 636 TFSRKQIMQPRELDLNVVVQNMITLLRRTLGEHVTLLVEADPHLPSVMADQGMMEQIILN 695

Query: 122 LFMVAHASLPRGGKVTIS---------------VQDSKNENIFSLKINGNLARFPEKFTQ 166
           L + A  ++ +GG +T+                        +  +   G      E  T+
Sbjct: 696 LAVNARDAMCKGGTLTVHTGSAVITEEEARLHADARVGLAVLIKVTDTGYGIPV-ENLTR 754

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +    +        +    V  +  ++   +              LL 
Sbjct: 755 IFEPFFTTKEVNQGTGLGLATVHGIVRQHGGLVRVSSQLGVGTEFQILLP 804


>gi|329939047|ref|ZP_08288421.1| two-component sensor kinase [Streptomyces griseoaurantiacus M045]
 gi|329301932|gb|EGG45825.1| two-component sensor kinase [Streptomyces griseoaurantiacus M045]
          Length = 381

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 52/234 (22%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 140 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDAD 199

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G   Q          R  +      
Sbjct: 200 ADRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQPADRFLLRIEHPL 259

Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             L  +     ++L NL   A                   +  +     ++   G     
Sbjct: 260 PALWADPDKIDQVLSNLLENAVRHGEGTVTIEITPSASPREGEEAGTSVTVSDEGPGIPE 319

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        S      +  Y V  +   +   +          +    L 
Sbjct: 320 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGVITVGRAPSGGALFRFTLP 373


>gi|325111286|ref|YP_004272354.1| histidine kinase [Planctomyces brasiliensis DSM 5305]
 gi|324971554|gb|ADY62332.1| histidine kinase [Planctomyces brasiliensis DSM 5305]
          Length = 567

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 75/236 (31%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           + +     + +  + A+  L S + H+  + + AI          L+E       ++L+ 
Sbjct: 184 LREKDRQLMHAQRMEAVGTLASGVAHEFNNLLHAIRGYTSFAQGRLEEGHAAHADLELVF 243

Query: 55  LSSMS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +S          L + R        VD    + ++ +++   +  D  VQ     +   
Sbjct: 244 NASDHAAVLTRQLLDYSRTGTDDLTIVDVGETVSNLVKMLRPILGKDVEVQSQIPEQSEL 303

Query: 111 L----SRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARF 160
                    ++ ++NL + A  ++   G+          V +  ++ + ++  +G     
Sbjct: 304 FVLASRVYLSQAIMNLCVNARDAMNASGRLTLTLSRKAGVDNQNDQIVITVADSGGGI-P 362

Query: 161 PEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I D    +        +    V     +    +  + +       +  L 
Sbjct: 363 DEIREKIFDPFFTTKAPGKGTGLGLAMVFNTIKKLGGSIEIDSVVGAGTTFTLTLP 418


>gi|254734856|ref|ZP_05192568.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254755511|ref|ZP_05207545.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254760047|ref|ZP_05212071.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
          Length = 357

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M   +        +     S + H+I SP+ +I      L +           + +I   
Sbjct: 123 MTDELNAM---EKMRQEFVSNVSHEIQSPLTSIKGFARALQDTNLPEEKRKHYLTIIETE 179

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKI 109
           +       + +           +   +            +  + +  +K +++    EK+
Sbjct: 180 TTRLSKLSQNLLKLTLLESEEYTPERVTYRLDQQLKQIVLNSEPLWAEKEIELDLDLEKV 239

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            ++ +    +++ +NL   +    P  G ++I +++ +      ++  G+     +    
Sbjct: 240 HITADQESMSQVWINLIHNSIKFTPSSGTISIKLKEYETLVEVRIRDTGSGISEEQKQHI 299

Query: 164 FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +    V  +   ++  +  E  + +       + 
Sbjct: 300 FERFYKADSSRNRAYGGSGLGLAIVKKVLDLHQGEIKVESEEGNGTECIVCIP 352


>gi|225026831|ref|ZP_03716023.1| hypothetical protein EUBHAL_01083 [Eubacterium hallii DSM 3353]
 gi|224955838|gb|EEG37047.1| hypothetical protein EUBHAL_01083 [Eubacterium hallii DSM 3353]
          Length = 437

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 57/223 (25%), Gaps = 19/223 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           L S  +     + + H++ +P+ AI    EL++   +  E +            RL  + 
Sbjct: 214 LKSARMRQDFTANVSHELKTPLTAISGYAELMENGMVPPEEIGSFAQKIEKNARRLLSLI 273

Query: 69  LAFGYTGSVD--------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                   +D                  +      I                E       
Sbjct: 274 NDIIRLSELDSSNTQLLVEKFDLFEEAQICVENMQIYAEKNDVTITYEGGHQEITANREM 333

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171
             +++ NL   A     + G V + V  S+     S+   G           F +    +
Sbjct: 334 INELINNLCANAIRYNKKNGSVKVRVDSSQGHPYISVADTGIGISKEHQKRVFERFYRVD 393

Query: 172 VEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +       +    V  +   +  +L  E        ++  
Sbjct: 394 KSRSKQTGGTGLGLAIVKHIVALHDAQLNLESEVGKGTTITVT 436


>gi|195978473|ref|YP_002123717.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
 gi|195975178|gb|ACG62704.1| alkaline phosphatase synthesis sensor protein PhoR [Streptococcus
           equi subsp. zooepidemicus MGCS10565]
          Length = 432

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 59/215 (27%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAFGY 73
           +   H++ +P+ +I    E + E+  ++  ++      +   S     I    + L+   
Sbjct: 214 ANASHELRTPVTSIKGFAETIKEMPDDETSLKEDFLDIIYNESLRLERIVEHLLTLSKAN 273

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSRERAKILLNLFMV 125
              +D          +        +           +  +          ++I+LNL   
Sbjct: 274 KTPLDLTEFQLRSFLLYTGQSMRPQLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSN 333

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A      GG++ +S Q        ++   G      E   +I +                
Sbjct: 334 AIQYTDNGGRIQLSSQRVAGGVAITVADTGIGISQIEL-DRIFERFYRVNKGRSRQSGGT 392

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  L+     ++            +  L 
Sbjct: 393 GLGLAIVKELSQLLGGQITVTSQLGEGSQFTLFLP 427


>gi|165871168|ref|ZP_02215818.1| sporulation kinase B [Bacillus anthracis str. A0488]
 gi|227816783|ref|YP_002816792.1| sporulation kinase B [Bacillus anthracis str. CDC 684]
 gi|254754211|ref|ZP_05206246.1| sporulation kinase B [Bacillus anthracis str. Vollum]
 gi|164713087|gb|EDR18614.1| sporulation kinase B [Bacillus anthracis str. A0488]
 gi|227005756|gb|ACP15499.1| sporulation kinase B [Bacillus anthracis str. CDC 684]
          Length = 424

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGQGTEAIIILP 418


>gi|163743182|ref|ZP_02150564.1| sensory box histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161383599|gb|EDQ07986.1| sensory box histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 880

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L+     A L + + H++ +P+  +  ++ELL+   +  +    +     S 
Sbjct: 336 LTRTRDEALAGERAKADLLTVMSHEMRTPLTGVLGAVELLEGTALSPDQHDYVSAIRTSG 395

Query: 61  IIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +                        D +  L D  Q        D  +  S   
Sbjct: 396 DRLMAHVNDVLQLSQLETSVDYEHQRIFNLSDLVQELIDAHQSTARRGRNDLSLHCSLGA 455

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPE 162
              D+      +   L  +   +L         V +      +    S+   G      +
Sbjct: 456 SGGDVLGRPVALKKVLVNLIENALQFTTDGAVSVDVQRLGQSDTVEISIADTGAGIAERD 515

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +           + +   +       +       +  E       + +  L 
Sbjct: 516 L-DRIFEDFIRLDASYARSSEGTGLGLAITRRIVVALGGDISCESELGEGSLFTISLP 572


>gi|90414670|ref|ZP_01222641.1| putative nitrogen regulation protein [Photobacterium profundum
           3TCK]
 gi|90324212|gb|EAS40787.1| putative nitrogen regulation protein [Photobacterium profundum
           3TCK]
          Length = 349

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 66/232 (28%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +   +  +    A  L   + H+I +P+G +  + +LL++   +    +  ++    A  
Sbjct: 118 SQELSQHAQQQAAKELVRGLAHEIKNPLGGLRGAAQLLEKTLPDPCYTEYTQMIIEQADR 177

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
               +    G          +  I L  + Q++      + ++   +     D + +  +
Sbjct: 178 LRNLVDRLLGPQRPGLQKIDNIHIVLEKVRQLVNLDCGENIQLHRDYDPSLPDFTMDSEQ 237

Query: 118 ILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +   +  +   +                    +  I  +  +      +  +G      E
Sbjct: 238 LEQAILNIVSNAALELQQVSGGNITLKTRTAHQALIQGKRYRIAAKIDIIDDGPGI-PSE 296

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V +      +       L  ++  ++       H    +  L 
Sbjct: 297 IQDTLFYPMVTAREGGTGLGLSIARNLVDQHHGKIEVVSWPGH-TKFTIYLP 347


>gi|83268889|gb|ABB99941.1| hypothetical protein pCT0023 [Listeria monocytogenes]
          Length = 370

 Score =  111 bits (276), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 67/218 (30%), Gaps = 17/218 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   L + I H++ +P+  +  ++E + +    I  E +Q            +  + +  
Sbjct: 151 LRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNIEIIN 210

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLN 121
                 D L         + + +  +   ++      +++  +            ++++N
Sbjct: 211 KIEAKYDHLNKTEFNIYKLIESVIENFASKIESKNLHVEIQGDNINISADKDKMNQVVIN 270

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTI 176
           L   A     + G +  S+  +K+  +  ++ NG           F +      +    +
Sbjct: 271 LLNNAIKFTQKEGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSRSRAL 330

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    V  +   +K  +  +            L 
Sbjct: 331 GGQGIGLAIVKSVVEAHKGSITVKSKLGLGTKFVIKLP 368


>gi|313149047|ref|ZP_07811240.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313137814|gb|EFR55174.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 913

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           MA+ +       +L   L     + + H+I +P+ AI    EL+   D+   ++E M +I
Sbjct: 535 MAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSCDDPEEKEEYMGII 594

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------- 103
           + ++   +  +  +         +            + + +    + +++          
Sbjct: 595 QSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEVELRLGN 654

Query: 104 --WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +N    A       G + +     K    F ++ +G      
Sbjct: 655 SGPDCWIFLDRNRLKQVWMNYLTNAVKCT-HSGYIKMGYSIEKGGIRFYVEDSGVGIPL- 712

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++               +       +      ++    +        A + 
Sbjct: 713 EVQDRVFGRFQKLNEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGSTFWAWIP 767


>gi|304406484|ref|ZP_07388140.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
 gi|304344542|gb|EFM10380.1| integral membrane sensor hybrid histidine kinase [Paenibacillus
           curdlanolyticus YK9]
          Length = 1088

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 63/231 (27%), Gaps = 22/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-------EDEVMQLIRLSSM 58
              LS   L     +R  H++ +P+  I    E L +          E+  +QLIR S  
Sbjct: 424 ERLLSLDKLKDEFLARTSHELRTPLHGIIGLTESLLDGPAGSRLSAEENGHLQLIRSSGQ 483

Query: 59  SAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +  +             +  +++    +  +  ++         + ++     + 
Sbjct: 484 RLAHLVNDILDFSKLRNREIQLHPVTINVHQIVELVLHLLRPLAEGKGLLLINEVPPALQ 543

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  +  ++   L  +   +     +  + +  +    +   ++K  G             
Sbjct: 544 VRADENRLHQMLHNLVGNATKFTLQGHVVISARKQARQITINIKDTGIGIAQESLGVIFE 603

Query: 169 -----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                D    S      I       L   +  R+  E         S  L 
Sbjct: 604 SFEQLDPTTNSRFGGTGIGLSITKKLVELHGGRIWAESTPGLGSSFSFTLP 654


>gi|303245364|ref|ZP_07331648.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio fructosovorans JJ]
 gi|302493213|gb|EFL53075.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfovibrio fructosovorans JJ]
          Length = 1137

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 72/240 (30%), Gaps = 31/240 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L S  + A+  L   I HD  + + +I NS EL    L E     + M+ +  +  
Sbjct: 753 ERQLLQSQKMEAIGTLAGGIAHDFNNILTSIINSAELALLDLPEDEPIGDDMRRVLKAGH 812

Query: 59  SAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                +K +      + +    ++    +G+   +I+  +  + ++ +      +    +
Sbjct: 813 RGSRLVKQILSFTRPSQAGFAAINVADVVGEAAGLIKASVPRNIKIVLDVPERAVTCRAD 872

Query: 115 R---AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156
                +I++NL   A  ++                   +       +      S+   G 
Sbjct: 873 PTQLHQIVMNLCTNAFQAMRETGGLLTVSLAEEALDETQAGHVGARAGRYAKLSIVDTGP 932

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I D    +    +   +    V  +   ++  +               L 
Sbjct: 933 GI-PPEILDKIFDPFFTTKQKGEGTGLGLAVVRGIVKSHRGAVRVVSQPGTRTDFDVYLP 991


>gi|296447368|ref|ZP_06889295.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylosinus trichosporium OB3b]
 gi|296255147|gb|EFH02247.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylosinus trichosporium OB3b]
          Length = 409

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 63/222 (28%), Gaps = 27/222 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           L S + H+I +P+  I  + +LL+      +  + +LI   +   +  +  M +      
Sbjct: 158 LASMLAHEIKNPLSGIRGAAQLLESSVGDEDRALTRLICDETDRIVRLVDRMEVFSDQRP 217

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRERAKILLNLFMVAHA 128
                + +  +   ++          + +                +  ++ LNL   A  
Sbjct: 218 PERDKVNIHIVLDHVKRVARSGFARHIRFIENYDPSLPPVAANRDQLIQVFLNLVKNAAE 277

Query: 129 SLPRGG----------------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           ++                    +     +       F ++ NG      +    + D  V
Sbjct: 278 AIGDAVDGEIELSTAFRPGVSLRTMGEGRPVGLPLEFCVRDNGRGV-PEDIAAHLFDPFV 336

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  + +++   +  E           L+ 
Sbjct: 337 TTKSSGSGLGLALVAKIVNDHGGIVECESHP-RRTTFRILMP 377


>gi|265751821|ref|ZP_06087614.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_33FAA]
 gi|263236613|gb|EEZ22083.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_33FAA]
          Length = 748

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 59/224 (26%), Gaps = 20/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
              +L     + + H+I +P+ AI     LL          + E   +I  ++   +  +
Sbjct: 524 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 583

Query: 65  K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        M        +      +    QVI        +              
Sbjct: 584 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 643

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172
              +++ N    A     +G        D + +   F ++  G      E    I +   
Sbjct: 644 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEEL-QMIFERFY 702

Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    +      ++  +    +  +   +     +A+L 
Sbjct: 703 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 746


>gi|255011234|ref|ZP_05283360.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 910

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           MA+ +       +L   L     + + H+I +P+ AI    EL+   D+   ++E M +I
Sbjct: 532 MAQELKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVSCDDPEEKEEYMGII 591

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------- 103
           + ++   +  +  +         +            + + +    + +++          
Sbjct: 592 QSNNELLLRLINDILDLSKIESGILERKRERFNLSKVCNELYTMMQPKITNPEVELRLGN 651

Query: 104 --WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +N    A       G + +     K    F ++ +G      
Sbjct: 652 SGPDCWIFLDRNRLKQVWMNYLTNAVKCT-HSGYIKMGYSIEKGGIRFYVEDSGVGIPL- 709

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++               +       +      ++    +        A + 
Sbjct: 710 EVQDRVFGRFQKLNEFAQGTGLGLAISRAIIEGADGKVGFSSVPGVGSTFWAWIP 764


>gi|237726273|ref|ZP_04556754.1| two-component system response regulator sensor kinase [Bacteroides
           sp. D4]
 gi|229434799|gb|EEO44876.1| two-component system response regulator sensor kinase [Bacteroides
           dorei 5_1_36/D4]
          Length = 748

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 59/224 (26%), Gaps = 20/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
              +L     + + H+I +P+ AI     LL          + E   +I  ++   +  +
Sbjct: 524 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 583

Query: 65  K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        M        +      +    QVI        +              
Sbjct: 584 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 643

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172
              +++ N    A     +G        D + +   F ++  G      E    I +   
Sbjct: 644 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEEL-QMIFERFY 702

Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    +      ++  +    +  +   +     +A+L 
Sbjct: 703 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 746


>gi|217969885|ref|YP_002355119.1| multi-sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
 gi|217507212|gb|ACK54223.1| multi-sensor signal transduction histidine kinase [Thauera sp.
           MZ1T]
          Length = 745

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 72/244 (29%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMD----------LVALLCSRICHDIISPIGAIHNSLE----LLDEVGIE 46
           + +     L S+            +A++ S + H++  P+ AI ++ +    +L    + 
Sbjct: 499 LRRRDELELESLRAQRWHADRVAQIAVMTSSLAHELSQPLTAILSNAQAGLRMLRAGALP 558

Query: 47  --------DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIA 95
                   ++++   + ++         +R        V+    + D+  ++        
Sbjct: 559 AEEGEAILEDIVADDKRAAQVIESLRAMLRRRPTERQRVEIAQLVRDVMGLMHSELVMND 618

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFS 150
           V   + +   G       +  ++L+NL M    ++               +D      FS
Sbjct: 619 VRFELDLLAEGCIEVDRAQIQQVLINLIMNGIEAMHELPPGGRLLSLTVTRDEARGVKFS 678

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +   G+     +   ++      +      +       +      R+  E         S
Sbjct: 679 VTDVGHGLEVLD-PGKVFQPFWTTKTTGIGMGLAICRSIVEAQGGRIWGENNAGPGATFS 737

Query: 211 ALLE 214
             L 
Sbjct: 738 FTLP 741


>gi|212691439|ref|ZP_03299567.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
 gi|212666049|gb|EEB26621.1| hypothetical protein BACDOR_00931 [Bacteroides dorei DSM 17855]
          Length = 757

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 59/224 (26%), Gaps = 20/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
              +L     + + H+I +P+ AI     LL          + E   +I  ++   +  +
Sbjct: 533 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 592

Query: 65  K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        M        +      +    QVI        +              
Sbjct: 593 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 652

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172
              +++ N    A     +G        D + +   F ++  G      E    I +   
Sbjct: 653 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHFFVEDTGAGIPKEEL-QMIFERFY 711

Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    +      ++  +    +  +   +     +A+L 
Sbjct: 712 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755


>gi|254183746|ref|ZP_04890338.1| sensory box histidine kinase [Burkholderia pseudomallei 1655]
 gi|184214279|gb|EDU11322.1| sensory box histidine kinase [Burkholderia pseudomallei 1655]
          Length = 821

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 580 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 636

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 637 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 696

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 697 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 755

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 756 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 807


>gi|30019452|ref|NP_831083.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|218234975|ref|YP_002366083.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|228957670|ref|ZP_04119417.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229043139|ref|ZP_04190864.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676]
 gi|229108855|ref|ZP_04238460.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15]
 gi|229126715|ref|ZP_04255727.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4]
 gi|229144004|ref|ZP_04272420.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24]
 gi|229149600|ref|ZP_04277832.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550]
 gi|296501981|ref|YP_003663681.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|29894996|gb|AAP08284.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|218162932|gb|ACK62924.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|228633946|gb|EEK90543.1| hypothetical protein bcere0011_11600 [Bacillus cereus m1550]
 gi|228639401|gb|EEK95815.1| hypothetical protein bcere0012_11670 [Bacillus cereus BDRD-ST24]
 gi|228656655|gb|EEL12481.1| hypothetical protein bcere0015_11720 [Bacillus cereus BDRD-Cer4]
 gi|228674624|gb|EEL29863.1| hypothetical protein bcere0018_11320 [Bacillus cereus Rock1-15]
 gi|228726198|gb|EEL77430.1| hypothetical protein bcere0027_11940 [Bacillus cereus AH676]
 gi|228802012|gb|EEM48882.1| hypothetical protein bthur0005_11870 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|296323033|gb|ADH05961.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 466

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   E   D    +   L
Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|320353817|ref|YP_004195156.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122319|gb|ADW17865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1002

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 70/240 (29%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           ++       M++V  L   + HD  + +  I + +E+    L E       +  +  +  
Sbjct: 623 ESQLLQSQKMEVVGRLAGGVAHDFNNMLTVIGSYVEMTLSDLTEQHPLYRRLFEVHKAVQ 682

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------IDL 111
            +    + +            ++ L +        +       +    +           
Sbjct: 683 HSADLTRQLLAFARKQVIAPKVLDLNETITAALKMLQRLIGEHIDLQWQPGASLWPVRMD 742

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGNL 157
           S +  ++L NL + A  ++   G + I   +                +  + S+K +G  
Sbjct: 743 STQIGQVLANLAVNARDAISGAGHLHIQTANVVVPADDAPCLELSPGDYVLISVKDDGCG 802

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               E  ++I +    +  +     +    V  +  +N   +          V    L +
Sbjct: 803 M-DQETQSRIFEPFFTTKENGCGTGLGLATVYGIVKQNDGAITVASAPGQGTVFHVYLPR 861


>gi|312215607|emb|CBX95559.1| similar to putative histidine kinase group protein [Leptosphaeria
           maculans]
          Length = 1313

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 57/242 (23%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  N      +  + + L +   H++ +PI  +    ELL ++ + +E  +       SA
Sbjct: 710 LLANTAAAKEASRMKSNLLANTSHELRTPIAGVIGMSELLFDMDLNEEQKECTENIHRSA 769

Query: 61  I------------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                              D    +    Q          + +V
Sbjct: 770 SSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLAYQSFIQDEV 829

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLA 158
                 +       +IL+N+   +      G          + +      F++   G   
Sbjct: 830 EMDLRVMGDPGRLRQILINVLTNSIKFTSVGVVKLTVGISRETKNTVTVNFTVSDTGIGI 889

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E   ++                   +       L    K ++  +         +  
Sbjct: 890 -EEEVRKRLFQPFSQADSSTARRFGGTGLGLAISKNLVELMKGQIWLDSKLGQGTTATFW 948

Query: 213 LE 214
           + 
Sbjct: 949 IP 950


>gi|298385951|ref|ZP_06995508.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
 gi|298261179|gb|EFI04046.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides sp. 1_1_14]
          Length = 1346

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 21   RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78
             I H+  +P+  I   +E+L ++ +   V   I+    +A      +     +       
Sbjct: 827  NISHEFRTPLTLILGQIEVLMQMDLGTTVYNRIQRIYKNAWHMRNLISELLDFRKQEQGY 886

Query: 79   ----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---V 125
                                  E     +   +     E I +  +  ++   +F     
Sbjct: 887  LKLRVEEQNLVTFTRQIYMCFYEYAQKKEITYRFDSVEETISVWFDPIQLQKVIFNLLSN 946

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-------S 178
            A       G +T+ V+   ++ + S+   G                              
Sbjct: 947  AFKYTSNKGNITVEVRKVASQAVVSVCDTGIGIPVEHISKIFDRFYQTENASSSSSFTLG 1006

Query: 179  HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       + + +  ++  E            L 
Sbjct: 1007 TGIGLALAKGIMNMHHGKIEVESTVGEGTKFILSLP 1042


>gi|284923232|emb|CBG36326.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli 042]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTVEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|270293636|ref|ZP_06199838.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275103|gb|EFA20963.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 300

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 60/236 (25%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMD-------LVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50
           + +     + + +       L +   + + H+I +P+ AI     LL   +     ++ +
Sbjct: 60  LKQTEAMLIQAKEKAEEADWLKSAFLANMSHEIRTPLNAIIGFSSLLHYVENEQEREQYI 119

Query: 51  QLIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            LI  ++   +  +             + L   +    + +       +           
Sbjct: 120 SLINHNNQLLLKLINDVLDLSKIEAGHIELHSEWFNPAELIEESITEYERNVPAGVKLFA 179

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
              +  G+         +IL N    A  +  +G        D+      S+   G    
Sbjct: 180 RYPAAPGQIEHDPMRIKQILNNFISNALKNTVQGYIEVYYETDTDG-IRISVSDTGCGIP 238

Query: 160 FPEKFTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +            +      +       +  +    +  +         +  L 
Sbjct: 239 PDKLGMIFERFEKVDSFAQGAGLGLSICKSIVEKMNGVITVDSTMGVGSTFTVELP 294


>gi|330831032|ref|YP_004393984.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
 gi|328806168|gb|AEB51367.1| Two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas veronii B565]
          Length = 770

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 54/219 (24%), Gaps = 24/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++    Q ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRMLMDTPLDPSQRQQLKTIHLSAVTLGNIFNDIIDLDKLDRR 347

Query: 80  LIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + +                    Q  +  + +            +       ++L NL 
Sbjct: 348 RLEIAPTRLDLPAFLDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLV 407

Query: 124 MVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDGNVES---T 175
             A      GG     +    +E       F ++  G      ++               
Sbjct: 408 GNAVKFTDEGGVTVRCLSHPADEPGKLALHFEVEDTGIGIPRAQQEKIFAMYYQVQGKKH 467

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       L      RL  +         +A LE
Sbjct: 468 ATGTGIGLAVSRQLVQAMGGRLYVDSDPGEGSCFTAELE 506


>gi|298675021|ref|YP_003726771.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
 gi|298288009|gb|ADI73975.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanohalobium evestigatum Z-7303]
          Length = 370

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 64/235 (27%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK      S     + L + + H++ +P+ +I    +++       + +  +  +     
Sbjct: 128 AKLEAEATSQAK--SELLANVSHELRTPLTSIIGFSDIMLKGKAGKLNNNQINYLNKIHK 185

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSWTG 106
           S    L  +      +      + L              + ++          +      
Sbjct: 186 SGQNLLDLINDLLDLSKIESGKMELHYEKISLTEIIEDLMAKLSPLASEKGLTLDSKINP 245

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKF 164
           +   +  +  K+   L+ + + ++       +T  V    N   FS+   G      ++ 
Sbjct: 246 DIEYVCMDNIKLRQILYNLIYNAIKFTNNGSITTEVDFVDNNYQFSVIDTGIGIPEDKQD 305

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    D + +       +    V  L   +   +  E         +  + 
Sbjct: 306 EIFESFKQLDSSTKRRHAGTGLGLTLVKRLVEIHGGYIEVESKYGEGSRFTFTIP 360


>gi|317051405|ref|YP_004112521.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316946489|gb|ADU65965.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 811

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 17/254 (6%), Positives = 63/254 (24%), Gaps = 43/254 (16%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------------ 50
           +      + + L+  L + + H+I +P   I  +  +L ++  +  ++            
Sbjct: 546 QQEAMRAAHLSLMGQLSAGVAHEINNPNNFIMLNTSVLQDIWGDISMLLERMHAHQPLHA 605

Query: 51  ------QLIRLSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIA 95
                 +L            +  +        +              +   + + +    
Sbjct: 606 GGFTFDELRDEIPQMLSRIHRGSQRIKVIVDHLKEFSSQEKATLRDDVEINQVIRDGLTM 665

Query: 96  VDKRVQVSWTGEK----------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK- 144
           +   ++      +                  ++++NL M A  +     +  I       
Sbjct: 666 MANEIRKHGEQFRLELTDQLPLLRGRGPRLEQVIINLVMNALEATHGMQEEVIVASRFNA 725

Query: 145 --NENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPE 200
             +    ++   G     P+    + +    +        +       +  E+   +  +
Sbjct: 726 DTSMVEVTVSDTGCGI-EPDTLKHLFEPFFTTKYAAGGTGLGLAICQSIIEEHMGSIRVD 784

Query: 201 IIDDHNVVLSALLE 214
                    +  L 
Sbjct: 785 SSPGIGTTFTVSLP 798


>gi|283853339|ref|ZP_06370587.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571263|gb|EFC19275.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 923

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 30/241 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK++    +         +++ H+I +P+ +I    + L    + D+  + + +   S+
Sbjct: 388 LAKDLAEEANKTK--TDFLAKVTHEIRTPLNSIKGMNDYLLSTSLNDDQRECLSIIKESS 445

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SW 104
              L                +            +     I Q + +   +D  V      
Sbjct: 446 NHLLTIVNDLLDLSKIEAGQLVFEHIDFALKQLIESTIRILQPLANQKKLDLHVAYEGDA 505

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159
                       ++L NL   A      G                     S+K  G    
Sbjct: 506 DIVVRGDPSRIRQVLFNLANNALKFTQTGTVGIVASVAWQESLDAYAITISIKDTGIGI- 564

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E   +I                   +       L       +            +  L
Sbjct: 565 AAEALQRIFQPFVQSDNSTSRKFGGTGLGLSICNQLIALMGGTIAVSSRPGQGSTFTFTL 624

Query: 214 E 214
           +
Sbjct: 625 Q 625


>gi|255523525|ref|ZP_05390493.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296186515|ref|ZP_06854918.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255512782|gb|EET89054.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296048962|gb|EFG88393.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 462

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 71/222 (31%), Gaps = 17/222 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
               L   L   I H++ +P+  + + +E L +       E +       +     +  +
Sbjct: 239 EQEKLRQRLTRDISHELRTPLSTLQSHMEALIDRVWEPTTERLTSCHEEILRLKRLVGDL 298

Query: 68  RLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---K 117
                Y G           +  + +   V  +   +DK VQ+    E I +  ++    +
Sbjct: 299 EKLAEYEGENLILNKTKFNMREVINNIAVNFEKQFLDKGVQLILNAEDISIYADKDKIIQ 358

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
           +++NL   A     + GKV +++ +  +    S++  G      +    F +    +   
Sbjct: 359 VIVNLISNALKYTEKDGKVEVNLLEDSHFVKLSVRDTGIGISEVDLQYIFERFYRADESR 418

Query: 175 T--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   I       +   +   ++ E   +       ++ 
Sbjct: 419 NKLTGGAGIGLTITKSIIEAHNGSIVVESKINEGSEFVIMIP 460


>gi|240137274|ref|YP_002961743.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
 gi|240007240|gb|ACS38466.1| Two-component sensor histidine kinase with a PAS domain
           [Methylobacterium extorquens AM1]
          Length = 646

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
           + +       + ++     + + H++ +P+ AI    ++L   G      +   +   + 
Sbjct: 337 LDRARAEAERADEVKTHFLATVSHELRTPLNAIIGFSDVLGGEGAVSLSPERSREYAGII 396

Query: 57  SMSAIIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + S    L  +                    VD    +     ++            S  
Sbjct: 397 AQSGRHLLDVVNTLLDISRIRGGHFDFQPEPVDVEALIRGCCDLMRLKADASGITLTSAP 456

Query: 106 GEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +R   ++L+NL   A    PRGG+V + V+         +  +G      
Sbjct: 457 VPAGCALVADARACRQMLINLISNAVKFTPRGGRVEVMVRRGGAYLDIVVSDDGIGITEA 516

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++ D   +       + +   +    V  LA  +   +  E        ++  L 
Sbjct: 517 DLP-RLGDPFFQVGGGYGRSHEGTGLGLSVVRGLAGLHGGAVSVESAPGKGTAVTVTLP 574


>gi|227356090|ref|ZP_03840480.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
 gi|227163735|gb|EEI48647.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis ATCC 29906]
          Length = 919

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +      ++  + + H++ +P+  I  +LELL  +   +E  +L++  
Sbjct: 429 MERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLTQNEETARLLKTM 488

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRV 100
             S+ + LK +     ++      + +          ++                +   +
Sbjct: 489 DNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKKDLAIYCFI 548

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +        +      +++ NL   +       G +T+ +   +    F +   G     
Sbjct: 549 EPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYRDEYYLYFDIHDTGRGINE 607

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            ES  +   +       L +     +     ++     +  + 
Sbjct: 608 KMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVGSRFTVRIP 666


>gi|254448754|ref|ZP_05062211.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
 gi|198261595|gb|EDY85883.1| multi-sensor hybrid histidine kinase [gamma proteobacterium
           HTCC5015]
          Length = 882

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 72/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       +S+    ++  + + H+I +P+  I   L++L+   ++ +  Q I  + ++A
Sbjct: 281 LTIAQAEAVSANKAKSVFLANMSHEIRTPLNGIIGFLDMLNRTKVDSQQNQYISTAQVAA 340

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104
              ++     +  +   +G +        I+ ++ +   +                    
Sbjct: 341 KSLIQLINGILDFSRIESGKMPLKQDEIPIDDLLAEIYDLHAPSAFEKGVELLFFPAQSL 400

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARF--- 160
               +  +    +I+ NL   A      G         ++N  I  S+  +G        
Sbjct: 401 PSTLMLDANVFKQIIGNLLSNAIKFTQHGDIQLHMNYFAENRAIAISVLDSGVGISQEVI 460

Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + F +   G+  +        +       L   +   +      +        ++
Sbjct: 461 NDIFNEFEQGDNTTARVHGGSGLGLAITRSLVELHGGSISAHTRPEGGARFDLTIQ 516


>gi|254442095|ref|ZP_05055571.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198256403|gb|EDY80711.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 536

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 66/240 (27%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            +  +L +  L A   S+        + H+  +P+  I   LE+L      D   ++  +
Sbjct: 142 RLAKDLENEKLKAEAASKAKSEFLAVMSHEFRTPMNGIIGGLEILKNEPAGDSSREIQSM 201

Query: 56  SSMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------------AVDKR 99
               A          + L+   + SV+  IG   +  VI   +             ++  
Sbjct: 202 MRECAFNQLELINDVLDLSKIESNSVELEIGPVCLSDVITSTMGTLGFKAESKSIKLESF 261

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           V  S        +R   +ILLNL   A      G               F++   G    
Sbjct: 262 VDPSVPNSFRSDARRIRQILLNLVGNAVKFTDSGEVKLKVTSSLGGMLEFTVTDTGIGIA 321

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           DG+ +       +       L       +  E         S  + 
Sbjct: 322 EADIKKVFESFSQVDGSYQRRYQGTGLGLTICKRLTRILGGEIRVESQLGVGSKFSVTIP 381


>gi|197285590|ref|YP_002151462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Proteus mirabilis HI4320]
 gi|194683077|emb|CAR43602.1| two component system, [includes both sensor kinase and response
           regulator domains] (capsular synthesis regulator
           component C) [Proteus mirabilis HI4320]
          Length = 942

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +      ++  + + H++ +P+  I  +LELL  +   +E  +L++  
Sbjct: 452 MERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLTQNEETARLLKTM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRV 100
             S+ + LK +     ++      + +          ++                +   +
Sbjct: 512 DNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKKDLAIYCFI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +        +      +++ NL   +       G +T+ +   +    F +   G     
Sbjct: 572 EPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYRDEYYLYFDIHDTGRGINE 630

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            ES  +   +       L +     +     ++     +  + 
Sbjct: 631 KMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVGSRFTVRIP 689


>gi|171317408|ref|ZP_02906601.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
 gi|171097425|gb|EDT42266.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria MEX-5]
          Length = 1242

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 23/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
           +R+ H+I +P+  +    ELL    +  +  + +     S    L  +     ++     
Sbjct: 568 ARMSHEIRTPMNGVLGMTELLQRTRLTSKQRKFVDTVYRSGQTLLVIIDDILDFSKIEAG 627

Query: 78  ---------DSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123
                    +    L D+  ++E            R   S             +IL NL 
Sbjct: 628 KLTLERIDFNLHQLLDDVVALLEPNARRKALELVYRRADSVPQRMRGDPVRLRQILTNLL 687

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A      G     +        +F++  +G     P+   Q+     +          
Sbjct: 688 GNAIKFTEHGHVGLSASYSDDGRIVFTIADSGIGI-PPDISAQLFRPFQQADSSTARKYG 746

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       LA      L  +       V +    
Sbjct: 747 GTGLGLVISRQLAEMMGGTLTLDSAPGKGSVFTVTTP 783


>gi|170759965|ref|YP_001787669.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169406954|gb|ACA55365.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 303

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S I HDI +P+ A+   ++LL +  I  E  +            LK +   F     +
Sbjct: 82  MISNISHDIRTPLTALMGYVDLLSDNSITKEKKEEYISIIRERGTALKDLMEEFFQMAKL 141

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLN 121
           +       IE+     +     +                        +      ++I+ N
Sbjct: 142 ECNDVEITIEKFNISEVVRKNIITFMNEINERNIAPKINIGDEEIFALGDKNYMSRIITN 201

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   +      G  + I +++       S+   G      E    F ++  G        
Sbjct: 202 LISNSLKYGYEGNVIGIDLKEDNKWITLSIWDKGKGIDKNELPYIFDRLYTGEKSRNRSF 261

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +A      +  + I     + +  + K
Sbjct: 262 QGSGLGLSIVRNMAQHMNGSITAQSIPYERTIFTVKIPK 300


>gi|150396735|ref|YP_001327202.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
 gi|150028250|gb|ABR60367.1| multi-sensor hybrid histidine kinase [Sinorhizobium medicae WSM419]
          Length = 872

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 83/241 (34%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSA 60
           +N       M+ V  L   I HD  + + AI  S +  LL     +     L+ +   + 
Sbjct: 468 ENQMAQTQKMNAVGTLAGGIAHDFNNVLTAILLSADHLLLSARPADATFADLMEIKRNAN 527

Query: 61  II------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        ++    +GD+  +++     + +V+V +  +   +  +
Sbjct: 528 RAAVLVRQLLAFSRKQTMRPTVLNLTDVIGDLRMLVDRMTGTNVKVEVDYGRDLWPVRTD 587

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156
                ++LLNL + A  ++P GG +T+  ++                ++  +  +   G 
Sbjct: 588 LGQFEQVLLNLAVNARDAMPAGGIITLRTRNLPAGEVAALGRRELPEEDFVMVEVSDEGT 647

Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I +    +        +    V  +  ++   + PE           LL 
Sbjct: 648 GI-SPEIMDKIFEPFFTTKDVGKGTGLGLSMVYGIVKQSGGYIYPESEIGSGTTFRILLP 706

Query: 215 K 215
           +
Sbjct: 707 R 707


>gi|3320466|gb|AAC82662.1| RcsC [Proteus mirabilis]
          Length = 507

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 72/239 (30%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +      ++  + + H++ +P+  I  +LELL  +   +E  +L++  
Sbjct: 23  MERSLQNMATAAEQANQAKSMFLATVSHELRTPLYGIIGNLELLQSLTQNEETARLLKTM 82

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRV 100
             S+ + LK +     ++      + +          ++                +   +
Sbjct: 83  DNSSSLLLKIISDILDFSKIESKQLKIDVKPFNCRQVVSFVISNYLPLIAKKDLAIYCFI 142

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +        +      +++ NL   +       G +T+ +   +    F +   G     
Sbjct: 143 EPDVPKIVNNDPVRVQQVISNLLNNSIKFTTT-GCITLHLYRDEYYLYFDIHDTGRGINE 201

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            ES  +   +       L +     +     ++     +  + 
Sbjct: 202 KMLHQLFEPFFQVSQNTESASEGTGLGLAICEKLINLMDGDISVVSQENVGSRFTVRIP 260


>gi|75910949|ref|YP_325245.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704674|gb|ABA24350.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 630

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 74/235 (31%), Gaps = 28/235 (11%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR 63
                ++ +  L S I HD+ + +  I  + +LL+   +      ++ ++  ++      
Sbjct: 256 LRAQRLESIGTLASGIAHDLNNVLAPILMTAQLLESQIKDERSQRLLPILITNAKRGANL 315

Query: 64  LKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116
           +K +             +     +G+I+Q+I++       +    +     +S +     
Sbjct: 316 VKQVLSFTRGLEGERTLLQLKHLVGEIQQIIKETFPKSIELAAHISQNLWTVSGDATQLH 375

Query: 117 KILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNLARFP 161
           ++L+NL + A  ++P+GG                            + ++   G      
Sbjct: 376 QVLMNLCVNARDAMPKGGTLKITAENFLIDENYARMNIDAKVGPYVVVTVTDTGIGI-SS 434

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I +    +        +    V+ +   +   +     +         L 
Sbjct: 435 DILDRIFEPFFTTKELGKGTGLGLSTVLGIIKSHGGFINVYTEEGEGSQFKVYLP 489


>gi|329765784|ref|ZP_08257351.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137736|gb|EGG42005.1| histidine kinase [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 510

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 79/224 (35%), Gaps = 16/224 (7%)

Query: 3   KNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +     +    L  +  L +RI HD+ +P+  I  +++ ++      ++ ++ + I + +
Sbjct: 285 QAQNDLIKKEKLSVIGELTARISHDLRNPLSVIKLAVDNMESRISKKLDPKIEEYIPVIN 344

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDLSRE 114
            S       +    G+  + +  + L  I +++E+ I        + ++   +   L   
Sbjct: 345 DSLSRINYQINQVLGFVKTTNIDMKLVSILKILEESIKHTNIPDNIILTLPEKDFSLIAN 404

Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDG 170
           R ++          +  ++ +          ++ ++ I   + +G+     E   +I + 
Sbjct: 405 RIQLEAAFSNILSNSVDAIGQSNGKITIRARNEKDQIILEFEDSGDGI-AKENIEKIFEP 463

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +   +  ++  +       V +  L 
Sbjct: 464 LFTTKQKGTGLGLASVKSIIDTHGGKISVKSPP---TVFTITLP 504


>gi|325960004|ref|YP_004291470.1| multi-sensor signal transduction histidine kinase [Methanobacterium
            sp. AL-21]
 gi|325331436|gb|ADZ10498.1| multi-sensor signal transduction histidine kinase [Methanobacterium
            sp. AL-21]
          Length = 1077

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 66/238 (27%), Gaps = 28/238 (11%)

Query: 1    MAKNICFNL--------SSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIE 46
            +A+N    +          ++  A + S   HD+  P+  + +  +LL+           
Sbjct: 830  LAQNSLMEMVTKLKTSNKELEQFAYVAS---HDLQEPLRMVASFTQLLERRYKNHLDDDA 886

Query: 47   DEVMQLIRLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            ++ +  I   +      +  +            +   +  +        +       +  
Sbjct: 887  NDYIDFIVEGAQRMKDLIDDLLAFSRLNTEVHKFEPILVEVALDDVSFNLKSSIEENNAT 946

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHA-SLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            +             +  ++  NL   A         K+ +S Q+  +E IF +  NG   
Sbjct: 947  ITYDPLPTINGDPSQIRQLFQNLISNAIKFHGDTPPKIHVSAQELDDECIFGVTDNGIGI 1006

Query: 159  RF--PEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 E+   I          +   I       +   +  ++  E  + +       +
Sbjct: 1007 NQNHQEQIFSIFKRLHTRKDYEGTGIGLAICKRIVERHGGKIWVESEEGNGSTFYFTI 1064


>gi|331659497|ref|ZP_08360439.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
 gi|315297924|gb|EFU57194.1| PAS domain S-box [Escherichia coli MS 16-3]
 gi|331054079|gb|EGI26108.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA206]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 52/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQLVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|326792832|ref|YP_004310653.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
 gi|326543596|gb|ADZ85455.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium lentocellum DSM 5427]
          Length = 583

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 17/221 (7%), Positives = 53/221 (23%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIR--------- 63
             + + H++ +P+  + +  E L +  I+        + ++   +               
Sbjct: 357 FVANVSHELRTPLTTVKSYTETLLDGAIDEKETAMHFLGVMEKEADRMTALVQDLLELSR 416

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  +         +   +       +I+    ++                   +IL
Sbjct: 417 IDNKQIQLEFVRLNLKPLLEEVLEAQYIHIIKHGHQLEVGYDKKEEYFIEGDLSRIRQIL 476

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
            N+   A    P  G + + ++      I  +   G      +   +I +          
Sbjct: 477 HNILSNAIKYSPEPGTLGVYMKKENAYVIVEITDTGMGIPEEDL-ERIFERFYRVDKARS 535

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +       L   +   +  E        +     
Sbjct: 536 RKMGGTGLGLSIAKELMLLHGGDIKIESQLGQGTKVILNFP 576


>gi|226312404|ref|YP_002772298.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
 gi|226095352|dbj|BAH43794.1| sporulation kinase [Brevibacillus brevis NBRC 100599]
          Length = 606

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/225 (8%), Positives = 62/225 (27%), Gaps = 13/225 (5%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIR 54
            +N      +  L  +  L + I H+I +P+ A+   ++ L           D ++  + 
Sbjct: 380 KQNEELLRRTEKLSVIGELAASIAHEIRNPLTALKGFIQYLRPTLSGGATYTDIMLSELD 439

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKID 110
             +      L   +        +     +  + + +E     +      +          
Sbjct: 440 RINFIVSELLVLAKPQTLNVKRILLHPLIESVVKFLESEANRNNTSINTIFSDIPIAIKG 499

Query: 111 LSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  ++ +NL   +  +    G     +     N+       NG      E   ++ +
Sbjct: 500 EENQVKQVFINLLKNSLDAITSNGTISIETTCLPNNQVRIRFTDNGCGI-SQELLPRLGE 558

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  +++  +      +    +  +  
Sbjct: 559 PFYTTKEKGTGLGLLVSNKIMKDHQGTINISSEVNKGTTVEIMFP 603


>gi|242280736|ref|YP_002992865.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242123630|gb|ACS81326.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 774

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 67/245 (27%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           AK+    + +       +   + + H+I +P+ AI    E+L +  ++DE  + + +   
Sbjct: 251 AKSEAMAVEAAKGTRAKSQFLAAMSHEIRTPMNAILGMAEILADSHLDDEQRRFVEILQE 310

Query: 59  SAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVD-------KRVQV 102
           S    L  +      +            D  +     +       A           +  
Sbjct: 311 SGESLLHLINEILDLSKIEAGEVAFEKRDLNLDRIIGKAFKVTAHAGHGKGLELAYNINR 370

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG--------KVTISVQDSKNENIFSLKIN 154
               + +       +I +NL   A     RG         +  ++      +  F++K +
Sbjct: 371 DVPVQLMGDPSRLQQIFVNLIGNAIKFTERGFVVVETSLVQPDMADNGGSLKIHFAVKDS 430

Query: 155 GNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      +    F +    +           +       L      ++  E        +
Sbjct: 431 GIGIEDDKLDSIFDRFTQADSSTTRKYGGTGLGLSICKSLCEAMGGKIWLESRKGFGTTV 490

Query: 210 SALLE 214
              L 
Sbjct: 491 HMELP 495


>gi|124383088|ref|YP_001023999.1| sensory box histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126447644|ref|YP_001078619.1| sensory box histidine kinase [Burkholderia mallei NCTC 10247]
 gi|254356639|ref|ZP_04972914.1| sensory box histidine kinase [Burkholderia mallei 2002721280]
 gi|124291108|gb|ABN00378.1| sensory box histidine kinase [Burkholderia mallei NCTC 10229]
 gi|126240498|gb|ABO03610.1| sensory box histidine kinase [Burkholderia mallei NCTC 10247]
 gi|148025666|gb|EDK83789.1| sensory box histidine kinase [Burkholderia mallei 2002721280]
          Length = 821

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 580 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 636

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 637 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 696

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 697 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 755

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 756 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 807


>gi|115373547|ref|ZP_01460843.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|310825046|ref|YP_003957404.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115369389|gb|EAU68328.1| histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|309398118|gb|ADO75577.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 675

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 57/237 (24%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSL----------------ELLDE-VGI 45
               + S  L     L + + H+I +P+  +  ++                E++ E    
Sbjct: 295 REKLIQSEKLAVAGQLAAGVGHEINNPLSFVMGNIHFAVEQLAALAEVASPEVIQETEEA 354

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVS 103
             E  +              F R        VD    L     +  +             
Sbjct: 355 LHEAREGAERIRRIVRDLKTFARGDDAQLRPVDVHAALEFSLSMAMNHVRYRAQVVRCYG 414

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR 159
                        ++ LNL + A  ++P G      +       ++  +  +   G    
Sbjct: 415 TVPPVWANEARLGQVFLNLLINAAQAIPEGDVAQHRILLTTYVQEDRVVVDVTDTGMGM- 473

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE   +  +    +    +   +       +    +  +              +L 
Sbjct: 474 SPEVLARAFEPFFTTKSQGEGTGLGLSICHGIIKALRGEMSAASTPGKGSTFRVMLP 530


>gi|94269593|ref|ZP_01291503.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451157|gb|EAT02080.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 478

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 19/230 (8%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            + +   L     LVAL  + + + H++ +P+ +I     LL         +      ++
Sbjct: 248 RREMEKELQKNQQLVALGKMAAGVAHEVRNPLSSIKGLATLLGGRFAADDRDHDTARLLI 307

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106
             +   + S    L + R       ++D    L D  +++E   +      +    +   
Sbjct: 308 NEVERLNRSIGELLDYARPLPLDRRAIDLNELLRDSLKLVESDASRQGVKLEFTPAAGQP 367

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I       ++LLNL++ A  ++P GG + ++           +  +G     PE    
Sbjct: 368 RPILDRDRLLQVLLNLYLNALQAMPAGGTLQLTATVQGGLVRLWVGDDGQGI-APEHLKV 426

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214
           + D    +  +   +    V  + +E+  RL             +   L 
Sbjct: 427 VTDPYFTTKPEGSGLGLAMVQKIINEHGGRLWLTS-PGKQRGTTVEIELP 475


>gi|182440353|ref|YP_001828072.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326781021|ref|ZP_08240286.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
 gi|50058179|dbj|BAD27459.1| putative sensor kinase [Streptomyces griseus]
 gi|178468869|dbj|BAG23389.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326661354|gb|EGE46200.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 499

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 17/209 (8%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLIRLSSMSAIIRLKFMRLAFG 72
           + H++ +PI  +   LEL+DE                +  +R      ++  +  R  F 
Sbjct: 259 VAHELRTPITVLRGHLELMDEDPDSRHGQTRALLFDELDRMRRIVDDLLLLARAERPDFL 318

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
             G       + D     +        V            +   + L+ L + A +    
Sbjct: 319 TLGQTSLTDLVVDTAAKAQALGRRHWTVAEVADVSVHLDEQRVTQALMQLAVNAVSHTGE 378

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-------STIDSHDIQFYY 185
           G  + I  +  +   +  +   G     PE   +I     +              +    
Sbjct: 379 GDAIEIGSRLWRGRVVLWVADTGPGV-APEDRERIFQCFYQGGTAVPGRAAPGIGLGLAL 437

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +A  +      E            L 
Sbjct: 438 VREIAQAHDGVAHVEEAPGGGARFVIDLP 466


>gi|42523783|ref|NP_969163.1| hypothetical protein Bd2335 [Bdellovibrio bacteriovorus HD100]
 gi|39575990|emb|CAE80156.1| unnamed protein product [Bdellovibrio bacteriovorus HD100]
          Length = 713

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 58/236 (24%), Gaps = 25/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
           AK+     S     +   +R+ H+I +P+ ++   LELL E      ++  + L   +  
Sbjct: 314 AKDQAEEASRAK--SEFLARMSHEIRTPLNSVLGMLELLRETQLSKDQERYLTLFSHAGE 371

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------------AVDKRVQVSWT 105
           +    +  +           ++  +          +               +  +     
Sbjct: 372 NLKALINDLLDFSKIEAKALTVENVSYNIHSTVRSVFDILQIKAEEQGLHFELHISKDVP 431

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEK 163
             +        ++L NL   A      G              + +  ++  G       +
Sbjct: 432 PLQWGDPTRLRQVLFNLIGNALKFTNEGSVKVKLELTKDAPEQLLIEVQDTGIGIPRERQ 491

Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     D  +        +       L       +  + +         LL 
Sbjct: 492 SKLFSSFAQGDPTIARKYGGTGLGLVISKNLVEIMGGTMEMKSLAGRGTTFKILLP 547


>gi|228937637|ref|ZP_04100274.1| hypothetical protein bthur0008_3170 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228977095|ref|ZP_04137497.1| hypothetical protein bthur0002_3150 [Bacillus thuringiensis Bt407]
 gi|228782631|gb|EEM30807.1| hypothetical protein bthur0002_3150 [Bacillus thuringiensis Bt407]
 gi|228822011|gb|EEM68002.1| hypothetical protein bthur0008_3170 [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 369

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHIQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      +K  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENDKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367


>gi|254525199|ref|ZP_05137254.1| histidine kinase-response regulator hybrid protein
           [Stenotrophomonas sp. SKA14]
 gi|219722790|gb|EED41315.1| histidine kinase-response regulator hybrid protein
           [Stenotrophomonas sp. SKA14]
          Length = 503

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 65/227 (28%), Gaps = 16/227 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59
           +        ++ ++LL + + HD+ + +  +    +LL    E      +  +I      
Sbjct: 140 ETELMRAQRLESLSLLAAGLSHDLRNILQPLLIMPDLLKARTEDPQLHHLADVIAECGRR 199

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LS 112
                + M      +      I +  +   +   +  +    V    +  D         
Sbjct: 200 GHEMAESMLSFVRGSRKPSERIEIDGLFDAVALLLRSNVPDAVRLELQVQDEGLVVDANY 259

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQI 167
            E  +++LNL + A  ++P GG++++    +            +   G      +  + +
Sbjct: 260 TELQQVMLNLALNAIQAMPNGGRLSLIASHAGQRDGVDWMHIRVADEGIGM-DADTLSHL 318

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  D   +       +       +               L 
Sbjct: 319 FNPFFTTKADGTGLGLMSCKRIVEGAGGSIHVSSQPGQGTCFELRLP 365


>gi|196046814|ref|ZP_03114036.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|229182902|ref|ZP_04310135.1| hypothetical protein bcere0004_4810 [Bacillus cereus BGSC 6E1]
 gi|196022349|gb|EDX61034.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|228600526|gb|EEK58113.1| hypothetical protein bcere0004_4810 [Bacillus cereus BGSC 6E1]
          Length = 392

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 170 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 229

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V      +       ++++
Sbjct: 230 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 289

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 290 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKREDIPKLFDRFYQGDKARSTS 349

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 350 EGAGLGLSIANWIVEKHYGKISVESRWGEGTCFEVILPK 388


>gi|158333452|ref|YP_001514624.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158303693|gb|ABW25310.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 788

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 25/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + K    N    +L +   +   H+  +P+  I +S ELL+      +   + + +  I+
Sbjct: 557 LNKERELN----ELKSRFVAMTSHEFRTPLATILSSAELLEHYGHKWDETRKLKHLSQIQ 612

Query: 55  LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S       L             +          +   GL +  Q+      +  R+Q  
Sbjct: 613 QSVDHMTGLLNDVLLLGKAESGNLAFNPVPMQLTEFCTGLAEELQITTQTHEIVCRLQEQ 672

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            T  ++D       I  NL   A    P+GG +   +    +E I  ++ +G      E 
Sbjct: 673 LTEVQMDEKL-LRHIFTNLLSNAIKYSPQGGIINFDLVFESDEAILKVQDHGLGIPPSEC 731

Query: 164 FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  N  + +       +    V      +   +     +    + +  L 
Sbjct: 732 SHVFNSFNRATNVGNISGTGLGLAIVKRSVDLHGGEITLTSQETVGTIFTVRLP 785


>gi|126442556|ref|YP_001062929.1| two-component sensor kinase protein [Burkholderia pseudomallei 668]
 gi|126222047|gb|ABN85552.1| two-component sensor kinase protein [Burkholderia pseudomallei 668]
          Length = 723

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709


>gi|121597261|ref|YP_990084.1| sensory box histidine kinase [Burkholderia mallei SAVP1]
 gi|238563116|ref|ZP_00439398.2| sensory box histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|251766917|ref|ZP_04819875.1| sensory box histidine kinase [Burkholderia mallei PRL-20]
 gi|254176051|ref|ZP_04882709.1| sensory box histidine kinase [Burkholderia mallei ATCC 10399]
 gi|254200388|ref|ZP_04906753.1| sensory box histidine kinase [Burkholderia mallei FMH]
 gi|254204412|ref|ZP_04910765.1| sensory box histidine kinase [Burkholderia mallei JHU]
 gi|254301655|ref|ZP_04969099.1| sensory box histidine kinase [Burkholderia pseudomallei 406e]
 gi|121225059|gb|ABM48590.1| sensory box histidine kinase [Burkholderia mallei SAVP1]
 gi|147748000|gb|EDK55075.1| sensory box histidine kinase [Burkholderia mallei FMH]
 gi|147753998|gb|EDK61062.1| sensory box histidine kinase [Burkholderia mallei JHU]
 gi|157810685|gb|EDO87855.1| sensory box histidine kinase [Burkholderia pseudomallei 406e]
 gi|160697093|gb|EDP87063.1| sensory box histidine kinase [Burkholderia mallei ATCC 10399]
 gi|238521351|gb|EEP84803.1| sensory box histidine kinase [Burkholderia mallei GB8 horse 4]
 gi|243064372|gb|EES46558.1| sensory box histidine kinase [Burkholderia mallei PRL-20]
          Length = 821

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 580 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 636

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 637 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 696

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 697 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 755

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 756 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 807


>gi|118476260|ref|YP_893411.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118415485|gb|ABK83904.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 416

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V      +       ++++
Sbjct: 254 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 313

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKREDIPKLFDRFYQGDKARSTS 373

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESRWGEGTCFEVILPK 412


>gi|86160538|ref|YP_467323.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
 gi|85777049|gb|ABC83886.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-C]
          Length = 1853

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 61/240 (25%), Gaps = 28/240 (11%)

Query: 3    KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            +++      + L++       + + H++ +P+ ++    ++L    +  +  E ++    
Sbjct: 1440 RSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTVEQVKFAST 1499

Query: 56   SSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
               S                       +        SV   +            +    R
Sbjct: 1500 VYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQVR 1559

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +                +IL NL   A     RG  V      +     F+++  G    
Sbjct: 1560 MAPDLPDRIHTDPTRLQQILKNLISNAFKFTERGEVVLEVSPAAGGALAFAVRDTGIGIP 1619

Query: 160  FP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +  Q  DG          +       +A      +  E       V + +L 
Sbjct: 1620 ADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLVLP 1679


>gi|220932996|ref|YP_002509904.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
 gi|219994306|gb|ACL70909.1| multi-sensor signal transduction histidine kinase [Halothermothrix
           orenii H 168]
          Length = 594

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 69/227 (30%), Gaps = 24/227 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             L     + + H++ +P+ +I   ++ +      +       + +I+  +    + +K 
Sbjct: 367 EQLRKEFVANVSHELKTPLTSIIGYIDTIIDNDIKDDTTIKRFLSIIKDEADRLYLLIKD 426

Query: 67  M--------RLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWT---GEKIDLSRE 114
           +        +         D    +      + E   + D  +++           +  +
Sbjct: 427 LLDLSKLEAKRGEVILQPGDLNKIVKKIYLMLQEQAESKDIDLKLDIKEKLPFVYLIPEQ 486

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++L+NL          GG+V +   +  N  +  ++ NG      E   +I +     
Sbjct: 487 IEQVLINLVDNGIKYTEPGGRVILRAYEENNRVVVEVEDNGIGI-PEEDQGRIFERFYRV 545

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 ++    I    V  +   +   +  E       +    L K
Sbjct: 546 DKARSRSMGGTGIGLSIVKHIIKNHDSEIKVESEPGKGSLFRFYLNK 592


>gi|147669545|ref|YP_001214363.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1]
 gi|146270493|gb|ABQ17485.1| PAS/PAC sensor hybrid histidine kinase [Dehalococcoides sp. BAV1]
          Length = 1262

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 2    AKNICFNLSSM---DLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
             +       S     L A+  + + I H+I +P+  +     +L E         + +Q+
Sbjct: 884  EEQKKLRYQSEMSSRLAAVGEMAAGIAHEINNPLTGVIGFASILMEREDLPADVMDELQI 943

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSW 104
            I   S   +  +K M         V             L     V++       R     
Sbjct: 944  INSGSQRVVEIVKRMLTFARQAKPVRSSVNITELIDNTLDLRSYVLKTANIEVVRHYEPE 1003

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFP 161
                   S +  +++LNL + A  S+ +  +    TI V+        S + NG      
Sbjct: 1004 LPLLTVDSGQMQQVILNLILNAEYSMKKAHEKGILTIRVKKEGEWVRMSFQDNGLGM-ST 1062

Query: 162  EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++      +    +   +       +   ++  +  E I       +  L 
Sbjct: 1063 ETLGKLFQPFFTTKDPGEGTGLGLSLSHGIILAHEGTIRGESILGEGAEFTIELP 1117


>gi|325107359|ref|YP_004268427.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
 gi|324967627|gb|ADY58405.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           brasiliensis DSM 5305]
          Length = 642

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + I   LS + L         + + H++ +P+  I   +ELL     + EV+Q       
Sbjct: 389 EQILTTLSDLSLANQRKDEFLAMLAHELRNPLAPIRTGIELLRIAADDPEVLQETIEVMD 448

Query: 59  SAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        + ++    G +D    L ++  VI+  +   + +      E      
Sbjct: 449 QQSRQLVTLVDDLLDVSRIARGKIDLRHDLINLADVIDQAVTASRPLLDDANHEFHVELP 508

Query: 114 ERA-----------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +             +++ NL   A    PRGG+V + VQ   N    +++  G       
Sbjct: 509 DCPLQVQGDSRRLVQVVSNLLNNAAKYTPRGGRVDLIVQPEPNRIGIAIRDTGIGI-PEH 567

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
              +I +                 I    V  L H +   +             + LL 
Sbjct: 568 MRERIFELFTQVDERQHDRYSGLGIGLTLVRTLVHLHNGEIQVHSDGQGQGSTFTVLLP 626


>gi|304383610|ref|ZP_07366069.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           marshii DSM 16973]
 gi|304335134|gb|EFM01405.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
           marshii DSM 16973]
          Length = 901

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 57/233 (24%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           + +     L  M  L     + I H+I +P+  I      +       + ++    +   
Sbjct: 375 LRRRNHILLKKMSTLRENFFTNITHEIRTPLTVILGLSRDITAADDTPDDLKEKSRTIER 434

Query: 60  A--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSW 104
                       L   ++             +     +         +   +  +     
Sbjct: 435 QGSQLLTLINQLLDISKMKSAVGDPDWQSGNIVAQIGMTVESFRAYANSRNITLQYVNDG 494

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
             E   ++    K++ NL   A    P  G+VT++V         S+   G         
Sbjct: 495 DVETNFVADYINKVMNNLLSNALKFTPEYGEVTVNVFHRDGLLHLSVADTGCGIDANNIT 554

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F     G          +    V  +       +  + + D        L 
Sbjct: 555 HIFEPFYQGTASGHTGGTGVGLALVKQIVDTLGGTISVDSVPDSGTTFHITLP 607


>gi|317050262|ref|YP_004111378.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945346|gb|ADU64822.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 777

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 67/248 (27%), Gaps = 33/248 (13%)

Query: 1   MAKNICFNLSSMDLVA-----------LLCSRICHDIISPIGAIHNSLELLDE------- 42
           M K +      ++                 + + H++ +P+ AI    E+  E       
Sbjct: 257 MLKRLRLAQQELEQARTAAEAASEAKAQFLANMSHELRTPLNAIIGYSEMTQEDIAAGNT 316

Query: 43  -------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
                    I    + L+ + +    I          +    D    L D+  ++   + 
Sbjct: 317 QSVQQDLEKINKAGLHLLSIVNDILDISKIEAGKMDLFLEDFDITQLLHDVVAIMTPLME 376

Query: 96  VD-KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
               + Q+  + +   +  ++ K+   L  +   +     +  I+V+   +     + ++
Sbjct: 377 KQGNQFQLVLSPDIGMMHADQTKVRQILINLLSNATKFTHQGEITVEVQNHGEHIVVSVH 436

Query: 155 GNLA-RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
                  PE+  ++                   +         H     +  E       
Sbjct: 437 DTGIGMDPEQVDRLFKAFTQADASTTRKYGGTGLGLSISQHFCHMMGGSIRVESTPGKGS 496

Query: 208 VLSALLEK 215
             +  L +
Sbjct: 497 HFTVQLPR 504


>gi|229148746|ref|ZP_04276996.1| hypothetical protein bcere0011_3180 [Bacillus cereus m1550]
 gi|228634754|gb|EEK91333.1| hypothetical protein bcere0011_3180 [Bacillus cereus m1550]
          Length = 369

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 75/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55
           M +     +     +  + + I H+I +P+ A+    ++  E    D +     +Q I  
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---IAVDKRVQVSWT-GEKIDL 111
            +      +   +         +    L  +  ++E +     V   +QV          
Sbjct: 205 INGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCNLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGCGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367


>gi|213646010|ref|ZP_03376063.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 233

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 66/215 (30%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         ++ 
Sbjct: 11  ANVSHELRTPLTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEV 70

Query: 80  LIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   E+V    +                     V  +   +    +    + NL   
Sbjct: 71  APALLLNEKVDVPMMLRVVEREAQTLSQQKHTFTFAVDDSLSVLGNEEQLRSAISNLVYN 130

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+S + + +   F ++ NG      E   ++ +                
Sbjct: 131 AVNHTPAGTHITVSWRRAAHGAEFCIQDNGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 189

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  +         S +L 
Sbjct: 190 GLGLAIVKHALNHHESRLEIDSSPGKGTRFSFVLP 224


>gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 1145

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54
           +      +L     L   L +   H++ +PI  I    E +     D    +   + LI 
Sbjct: 459 LTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQDLTEGQQNQLGLII 518

Query: 55  LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S+      +  +             +   V S   +  +  + +  +       V  + 
Sbjct: 519 KSADGLARLVDDLLDYHQMRYGQLEIHPQPVASKGVIRLVLDLCQHLVQAKPLTLVDISP 578

Query: 107 EKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
            ++       +   +++ NL   A    P+ GKV +S     N     +   G       
Sbjct: 579 AELPPVLADEQRLEQVIYNLVGNAIKYTPQ-GKVVLSALVEGNFLRIRVTDTGIGIAKDH 637

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F  +V  + E +     +       L H     L  E         +  L 
Sbjct: 638 LEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLP 692


>gi|156742948|ref|YP_001433077.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
            13941]
 gi|156234276|gb|ABU59059.1| multi-sensor hybrid histidine kinase [Roseiflexus castenholzii DSM
            13941]
          Length = 1234

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 69/234 (29%), Gaps = 19/234 (8%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQ 51
            + +          L AL  L +   H++ +P+  I    +L       L      +++ +
Sbjct: 866  LRRLEAQVRQHEKLAALGRLVAGAAHELNNPLAVILGLSQLQLGEDIPLSVRADLEQIER 925

Query: 52   LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKID 110
              R ++        F +        +D  + + +  Q +     A    V V    +   
Sbjct: 926  AARRAAAIVHQLRAFGQPRALELVPLDLSLVIDETLQRLASRIAAEHIAVTVDLPPDLPR 985

Query: 111  LSRERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +  E  +I   +F +A  ++             +  S ++  +  + +++  G       
Sbjct: 986  VLGELHQIEQVVFNIALNAVQALALRLPGEPRHLRFSAREDSDSVVLTIEDTGPGIAPEH 1045

Query: 163  KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +     +    V  +  +++  +  E       V    L +
Sbjct: 1046 LSRVFEPFFTTRDVGQGMGMGLAVVYSIMQQHRGEVWVESSQGVGTVFRVRLLR 1099


>gi|119944598|ref|YP_942278.1| sensor histidine kinase PAS domain-containing protein [Psychromonas
           ingrahamii 37]
 gi|119863202|gb|ABM02679.1| sensor histidine kinase, PAS domain [Psychromonas ingrahamii 37]
          Length = 599

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 62/220 (28%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             +   H++ +PI  I    E + +     E M+   +  +          +    + S 
Sbjct: 379 FVANASHELKTPITVILGLAETILDYKDMPENMRTRFMGDIQTQTLRLSSLVTDLMSISR 438

Query: 78  -----------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                                 L +++ +  +                     E  +++ 
Sbjct: 439 LETTQNGVMTETVDLTASVKNALSNVDNICREKKITLSNRLPKGEMLINGDKEEINQLID 498

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P  G V+++++    +    +K  G          +I +           
Sbjct: 499 NLIGNAIKYTPSLGHVSVTLKALDEQAQIIVKDTGIGISLSH-QQRIFERFYRVDKARSR 557

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V  +  ++K  +    I++H    + LL 
Sbjct: 558 DLGGTGLGLSIVKNIVEKHKGTISVSSIENHGSTFTLLLP 597


>gi|113969135|ref|YP_732928.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
 gi|113883819|gb|ABI37871.1| multi-sensor hybrid histidine kinase [Shewanella sp. MR-4]
          Length = 1118

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 56/214 (26%), Gaps = 21/214 (9%)

Query: 22  ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------------ 69
           + H+I +P+ AI    ++L E  ++ E  + +   + SA   +  +              
Sbjct: 550 MSHEIRTPMNAIIGFSDILLESVLDTEQHKQLSTINRSAKSLMHLLNDVLDSAKLDKGKL 609

Query: 70  --AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMV 125
                     D +  +     +      +   V ++ +     I       ++L+NL   
Sbjct: 610 ELENRVFCLTDEIDTVISTLWLQAKKQRLSLEVDIAPSMAANFIGSPERIRQVLINLIGN 669

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHD 180
           A      G         + N   F +   G      +           D ++        
Sbjct: 670 AVKFTCEGKVTVSVFPQNDNLVTFEIIDTGIGMTPEQLNRVFEAFAQADASMSRKYGGTG 729

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L      +L  E            + 
Sbjct: 730 LGTTISKQLVELMGGQLEAESTLGQGSTFRFTIP 763


>gi|167906877|ref|ZP_02494082.1| two-component sensor kinase protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 709

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 468 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 524

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 525 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 584

Query: 117 ----KILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 585 GIEAQLVLLFQNLIGNAIKFRSKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 643

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 644 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 695


>gi|229541696|ref|ZP_04430756.1| histidine kinase [Bacillus coagulans 36D1]
 gi|229326116|gb|EEN91791.1| histidine kinase [Bacillus coagulans 36D1]
          Length = 420

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 64/220 (29%), Gaps = 20/220 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSMSAIIRLKFM--- 67
               S   H+I +P+  I + +ELL     E      + +  +          +  +   
Sbjct: 188 TQFVSDASHEIRTPLAVIQSRVELLLRKPNETVRDVLQDISTVLNECRRLTKLVSNLLTL 247

Query: 68  --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                    +        + L  + D    +         ++ +             +++
Sbjct: 248 ARSDSDKIEIERKPFYLDELLREIMDHFSELAAIQGKTLILKSAPPVTFSGDRDRIHQLI 307

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----EST 175
           + L   A      GGK+ ++  +SKN    S++ NG   +  ++              + 
Sbjct: 308 VILLDNAMKYTGDGGKIELACFESKNHVGISVQDNGIGLKEEDREKIFDRFFQVSKSRTK 367

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +S  +       +  ++  ++  +         +    K
Sbjct: 368 TESLGLGLSIAKWIVEKHSGKIRVDSKLGEGTTFTITFPK 407


>gi|148263612|ref|YP_001230318.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
 gi|146397112|gb|ABQ25745.1| response regulator receiver sensor signal transduction histidine
           kinase [Geobacter uraniireducens Rf4]
          Length = 520

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 51/216 (23%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S + H++ +P+ A+    EL+    +    ++           +L  +   +      
Sbjct: 302 MLSAVSHEMRTPLTALMGYTELMLTNELSMPQLKEYLKVIQREADKLNELIGNYLDIQRQ 361

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------------KILLNLF 123
            +         V    +  +             +  +                ++L  L 
Sbjct: 362 KASRSTAGFRPVNIRPLMEETADLFGAASRNHRIIVDCPVDLAPVLGDEKLLRRMLEMLV 421

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDS 178
             A    P GG+V +            ++  G      E                     
Sbjct: 422 SNAVKFSPNGGEVCLGASMEAGNITILVRDQGVGIPAEELEHIFELFYRVDNTDRRMFGG 481

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +A  +  R+  E            L 
Sbjct: 482 IGLGLALVKEIAIGHGGRVWAESSIGKGSAFYVSLP 517


>gi|189347008|ref|YP_001943537.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
 gi|189341155|gb|ACD90558.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium limicola DSM
           245]
          Length = 926

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 57/229 (24%), Gaps = 26/229 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLK 65
            S  L       + H+I +P+  I    ELL E  ++    DE ++LI  S    +  + 
Sbjct: 554 ESDRLKTCFLENMSHEIRTPMNGILGFSELLKEPLLDGSKKDEYIELIHQSGKRMLSIIN 613

Query: 66  FMRLAFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------- 113
            +                          +   F     R  +                  
Sbjct: 614 DLIDISKIEAGEIAIQYTEASLDKIFHDLQAFFEPQATRKGLLLHCTGCVPPSASVIVTD 673

Query: 114 --ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                +IL NL   A      G  +      + +   F ++  G          +I D  
Sbjct: 674 KSRLVQILTNLVQNALKYTASGE-ICFGCTKNGDFLDFYVRDTGIGI-PDFLTEKIFDRF 731

Query: 172 VE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +         +   +       L      R+  +       V S  L 
Sbjct: 732 RQAQVDPVREYEGVGLGLSISKSLVELLGGRIGVQSSAGEGSVFSFSLP 780


>gi|317132096|ref|YP_004091410.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315470075|gb|ADU26679.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 452

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 64/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           + +N    +   +    L S I HD+ +P+ +I   LE +  + G+  +          S
Sbjct: 210 LQENERLKIEYENNRKALISNISHDLKTPMTSIQGYLEAITADAGMPADRQARYLKIIQS 269

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----------------V 102
               +  +        ++D          V       D   +                 +
Sbjct: 270 NSAYMNRLIDDLFLFSTLDLQKLEFHFAPVSIRPFLRDMMEEFRLDLEERGALFRYEDAL 329

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
                     +   +IL NL   A    P+ G  V +     +     ++K NG      
Sbjct: 330 DREYTVDLDPKRFHQILRNLIGNAVKYGPKQGLAVRVKAYVIEENLRLAVKDNGQGIPAK 389

Query: 162 EK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +             S  +       LA  +  ++      +     +  + 
Sbjct: 390 DLPHLFERFYRADPERTKDFSSTGLGLAIAQELAQAHGGKITVASEINAGSCFTVSIP 447


>gi|229172567|ref|ZP_04300126.1| hypothetical protein bcere0006_16790 [Bacillus cereus MM3]
 gi|228611038|gb|EEK68301.1| hypothetical protein bcere0006_16790 [Bacillus cereus MM3]
          Length = 288

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL      +    E  V 
Sbjct: 46  MAKSLKESIENEKKSQEMKTEMISNISHDLRTPVTSLIGYADLLGNQLHSNREECEQSVS 105

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++  IE  +           +  R+
Sbjct: 106 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPLLDDADMSFRI 165

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++  N+   +      G  + I V          +K  G     
Sbjct: 166 NGDKELHVEIDVAVMVRLFENVISNSIMYGKDGKDILIQVSKRDMNAEIEIKNFGQCIPD 225

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     +    V + +L 
Sbjct: 226 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIVLP 283


>gi|206967740|ref|ZP_03228696.1| sporulation kinase [Bacillus cereus AH1134]
 gi|229188614|ref|ZP_04315653.1| hypothetical protein bcere0002_3090 [Bacillus cereus ATCC 10876]
 gi|206736660|gb|EDZ53807.1| sporulation kinase [Bacillus cereus AH1134]
 gi|228594803|gb|EEK52583.1| hypothetical protein bcere0002_3090 [Bacillus cereus ATCC 10876]
          Length = 369

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D+L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCNLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGCGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367


>gi|227819916|ref|YP_002823887.1| two component sensor-kinase [Sinorhizobium fredii NGR234]
 gi|36958717|gb|AAQ87185.1| Sensory Transduction Protein Kinase [Sinorhizobium fredii NGR234]
 gi|227338915|gb|ACP23134.1| two component sensor-kinase [Sinorhizobium fredii NGR234]
          Length = 1333

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 59/240 (24%), Gaps = 30/240 (12%)

Query: 2    AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQL 52
                   L+   L         + L + I H++  P+ A+  +          E   +Q 
Sbjct: 1090 RAEEKLRLAQESLARASQAASLSELSASIAHEVNQPLAAVVANSHACQRWLTAEPPNLQR 1149

Query: 53   IRLSSMSAII--------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
             + +    +                 K              +  + ++         V  
Sbjct: 1150 AQRTVERIVRDANSAADVVSRIRALFKQSIGTRINAALASVISEVRNLLADEAARRRVRI 1209

Query: 99   RVQVSWT-GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKIN 154
             +++            +  ++L+NL      ++        + +      +     +   
Sbjct: 1210 DLKIDGDLPPIAIDHIQIQQVLINLIRNGMEAMGSLAGDRVLGMRASYIGDVVQTEISDL 1269

Query: 155  GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            G      E   ++ +    +  D   +       +   +  RL  E  + H       L 
Sbjct: 1270 GPGI---EFPDRVFEPFFTTKKDGMGMGLAICRSIVELHGGRLWAEKNEPHGAKFIFTLP 1326


>gi|34498900|ref|NP_903115.1| two-component sensor [Chromobacterium violaceum ATCC 12472]
 gi|34104749|gb|AAQ61106.1| probable two-component sensor [Chromobacterium violaceum ATCC
           12472]
          Length = 381

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 59/220 (26%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
               L ++  + + + H + +P+ +       L +     E        S++ +  L+ +
Sbjct: 159 QQQKLASMGSMAAALAHQLRTPLASAMLYTANLKQDIPRPEDRARFVDKSLARMRALEGL 218

Query: 68  RLAF-----------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                                  L  +  +         V     +        L   +A
Sbjct: 219 IQNMLGFVRGQVSSLEKAPLEPLLEDVCAVLAPQCHDKGVFFDCNLPADSAITVLIDRKA 278

Query: 117 K--ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
               L+NL   A      GG+V ++V     + +F ++ +G          +I +     
Sbjct: 279 LQGALINLLENALQFASPGGRVGLAVASDGADVVFCVEDDGPGI-DEAVRERIFEPFFTQ 337

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +A E    +               L 
Sbjct: 338 RPGGTGLGLAIVKKVAEELGGSVRCYNKVAGGACFELRLP 377


>gi|27366581|ref|NP_762108.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6]
 gi|27358147|gb|AAO07098.1| TMAO reductase sytem sensor TorS [Vibrio vulnificus CMCP6]
          Length = 970

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 458 AKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQKRYADIINRSGK 517

Query: 62  IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+          +S   L  + +     +              ++    
Sbjct: 518 NLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVN 577

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A     +G          + +N   F +   G      E+
Sbjct: 578 HYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQ 637

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T        S          +       +      ++     +         + 
Sbjct: 638 ATLFDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVP 692


>gi|49474327|ref|YP_032369.1| sensor histidine kinase [Bartonella quintana str. Toulouse]
 gi|49239831|emb|CAF26224.1| Sensor histidine kinase [Bartonella quintana str. Toulouse]
          Length = 829

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 60/243 (24%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           M ++       M  V  L   I HD  + + AI  S + L             +  I+ +
Sbjct: 440 MLEDKIMQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDFLLNMHRSSDPAYADLINIKNN 499

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKI 109
           +  A   ++ +             +   ++   I +            K +         
Sbjct: 500 ANRAAALVQQLLAFSRKQTLRPEKVDFTELLSDIRNLILPLLGNNIQLKIIHGRDLWSVE 559

Query: 110 DLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKIN 154
                  ++++NL + A  ++                +  +              ++   
Sbjct: 560 VDQASFQRVIINLVINARDAMSEGGVVTIATNNITKQQSAEFDNVGFAIGEYVQLTISDT 619

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          ++ +    +        +    V  +  +    +  +  +         
Sbjct: 620 GTGISAA-VQEKMFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGYIYCDSREGEGATFHIF 678

Query: 213 LEK 215
           L +
Sbjct: 679 LPR 681


>gi|238790320|ref|ZP_04634093.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
 gi|238721584|gb|EEQ13251.1| PAS/PAC domain [Yersinia frederiksenii ATCC 33641]
          Length = 1522

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 55/239 (23%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--- 57
           +         +    +   + + H++ +P+ AI   L LL   G++ +       S    
Sbjct: 757 LKTAREAAEEANKAKSAFLANMSHELRTPMNAILGMLTLLRRTGLDRKQADYAVKSEAAT 816

Query: 58  ----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSW 104
                     L F ++  G          +  +           +    + V   +  S 
Sbjct: 817 RTLLRLLNDILDFSKIESGKMELECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPSL 876

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
                  S    +IL NL   A               I+         F ++  G     
Sbjct: 877 PQFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGI-A 935

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           PE    I  G                +               L  E       +    L
Sbjct: 936 PENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLESQPGQGSLFHFTL 994


>gi|294498535|ref|YP_003562235.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
 gi|294348472|gb|ADE68801.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium QM B1551]
          Length = 995

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 23/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK     ++     +   S++ H++ +P+  I    +LL+     +E  +      +S  
Sbjct: 258 AKEEAEKVNMAK--SSFLSKMSHELRTPLNGILGFAQLLEMDESLNEQQRDFAQEILSGG 315

Query: 62  IRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             L  +         ++               +    I  V       +  +       +
Sbjct: 316 SHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPLAKKKNISIYSQLDQWE 375

Query: 109 ID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +ILLNL   A       GKV +  +  +N+    +   G      E +
Sbjct: 376 DMIVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQENKQYIHIVDTGVGFSVEE-Y 434

Query: 165 TQIVDGNV---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T++         +  +   I    V  L H     +               L 
Sbjct: 435 TKVFVPFYRIESTKEEGTGIGLSLVKQLVHLMGGEINVTSNKGTGSEFCFSLP 487


>gi|108759669|ref|YP_629805.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
 gi|108463549|gb|ABF88734.1| sensory box histidine kinase [Myxococcus xanthus DK 1622]
          Length = 706

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 63/241 (26%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQL 52
           M +     +       +   + + H+  +P+ AI     +L +          +  + ++
Sbjct: 462 MLRRQAIQVEQASAAKSQFLANMSHEFRTPLNAILGYTNMLLQGVSGELNPAQKRNLTRI 521

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------- 105
                    +  + + +     G +   +    I +++++ +A    +            
Sbjct: 522 DSNGRHLLEVINEILDITRIEAGRMPLNLSDFGIPELLQEVMAEMDPIIARSKLTVSAHL 581

Query: 106 ----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF 160
                      ++  +I+LNL   A      G     +   +       S+   G     
Sbjct: 582 GPRVPAVYSDRQKVKQIVLNLLSNALKFTHEGSVQVQAEYVAATSTLTISVTDTGIGI-D 640

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P    +I +                 +       LA     R+  +         +    
Sbjct: 641 PANQEKIFEDFQQVDSSPTRAYGGTGLGLSICRRLATMLGGRVTLQSTQGEGSTFTLHFP 700

Query: 215 K 215
           +
Sbjct: 701 R 701


>gi|320638850|gb|EFX08496.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. G5101]
 gi|320644218|gb|EFX13283.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H- str. 493-89]
 gi|320649537|gb|EFX18061.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H- str. H 2687]
 gi|320654933|gb|EFX22894.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320660440|gb|EFX27901.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320665710|gb|EFX32747.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 753

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q    ++     
Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 445

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 505

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+        +
Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616


>gi|320354830|ref|YP_004196169.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320123332|gb|ADW18878.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 946

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 59/234 (25%), Gaps = 30/234 (12%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMS 59
            +  + A+  L   I HD  + +G I    ++          +           + ++  
Sbjct: 571 QAQKMEAIGTLAGGIAHDFNNILGGIIGFTDMALLQCAPGTELHSNLLHIRQGGKRAADL 630

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L F R +      V     + +  +++   +     ++         +     +I 
Sbjct: 631 VQQILTFSRQSAEEKSPVVVAALIQESLKLMRATLPATIDIKQELWENTAKVMAAPVQIQ 690

Query: 120 LNLFMVAHASLPRGGKV-----------------TISVQDSKNENIFSLKINGNLARFPE 162
             +  +   +     +                       ++ +     ++  G      E
Sbjct: 691 QIVMNLCANAFYSMKEKGGRLTLRLRRKRAAELGKTGDHEAGDWLALVVEDTGQGM-ENE 749

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I      +    +   +    V  +  +    +      +   V + LL 
Sbjct: 750 TLQRIFTPFFTTKKPGEGTGMGLSVVHGIVRDLGGEITVRSQPEEGTVFTVLLP 803


>gi|312149029|gb|ADQ29100.1| sensory transduction histidine kinase, putative [Borrelia
           burgdorferi N40]
          Length = 382

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 20/227 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAII 62
            + ++         I H+I +P+GAI  +L+LL +   + ++         ++       
Sbjct: 146 RVEALASFTRHARNIAHEIKNPLGAIDINLQLLKKEIEKQKMKNGKAENYFKVIKEEINR 205

Query: 63  RLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             K +         +   +   D         E +         ++ ++       L  E
Sbjct: 206 VDKIVTEFLLTVRPIKINLQEKDIKQVIGSVCELLNPGLENKHIKLLLNLNKISNILIDE 265

Query: 115 R--AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +   ++++N+   A  +L        K+ I + +  N+   ++K NGN     E   +I 
Sbjct: 266 KLLKQVIINIVKNAEEALLETKKEIKKIEIFLFEKDNKIHINIKDNGNGI-KDEVKEEIF 324

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +      I       +  E    +  E  +    + +  L K
Sbjct: 325 KPQFSTKEKGSGIGLTISYKIIKELGGEIFVESKEGKGTIFTITLPK 371


>gi|300118430|ref|ZP_07056176.1| sensor histidine kinase [Bacillus cereus SJ1]
 gi|298724215|gb|EFI64911.1| sensor histidine kinase [Bacillus cereus SJ1]
          Length = 436

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGINEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|293417597|ref|ZP_06660219.1| histidine kinase [Escherichia coli B185]
 gi|291430315|gb|EFF03313.1| histidine kinase [Escherichia coli B185]
          Length = 753

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q    ++     
Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 445

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDVSQL 505

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+        +
Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616


>gi|262279365|ref|ZP_06057150.1| signal transduction histidine kinase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262259716|gb|EEY78449.1| signal transduction histidine kinase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 369

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 62/238 (26%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +    +   L   + H+I +P+  I  + +LL     +    +   +       
Sbjct: 126 SKEENLVQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLNDKTYAEFTDVIINEVDR 185

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                    G         V+    L  +  +I +      ++   +     D++ +R +
Sbjct: 186 LTNLADTMLGSRQLPSYENVNVHEPLERVRSLIANQTKKKIKIIRDYDLSLPDVNADRDQ 245

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKN---------------------ENIFSLKINGN 156
           ++  +  ++  ++    +      D +                           ++ NG 
Sbjct: 246 LIQVMLNISVNAIQAITENKAFFIDQEPELILRTRIQRLVTINGVLNRSTVRVDIEDNGP 305

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V        +       + H++   +  + +     + S  L 
Sbjct: 306 GIPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGK-TIFSLYLP 361


>gi|261212467|ref|ZP_05926752.1| sensor protein TorS [Vibrio sp. RC341]
 gi|260838398|gb|EEX65054.1| sensor protein TorS [Vibrio sp. RC341]
          Length = 969

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 55/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL E  +       +++ + S  
Sbjct: 457 AKARYQAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLQETSLTSTQQHYVQVINRSGR 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +     Y+      + +      +   +     +                  + +
Sbjct: 517 SLLAILNDVLDYSKIEAGHLEIHQSHFDLYRLVRETHELMQSRALEKGITLSYQIDENVS 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +    + +          F+++ +G      ++ 
Sbjct: 577 QYWQGDEIRIGQVLNNLVGNGIKFTEQGQVCIRVRFDTQSGGLCFAVEDSGIGIAEQDQV 636

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                   +       L       L               L 
Sbjct: 637 SLFDAFTQAEAGRRKQGGTGLGLAISRKLVEAMGGELQLSSQLGQGSCFYFTLP 690


>gi|197118247|ref|YP_002138674.1| HAMP/PAS domain-containing phosphate sensor histidine kinase
           [Geobacter bemidjiensis Bem]
 gi|197087607|gb|ACH38878.1| phosphate sensor histidine kinase, HAMP and PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 460

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 62/228 (27%), Gaps = 23/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------- 62
               +     + + H++ +PI  I    E L    +E        +S + +         
Sbjct: 218 QMEKMRRDFVANVSHELRTPITIIKGYAETLLAGALEHPTQATKFVSIVHSHADRLASLV 277

Query: 63  -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLS 112
                  +    A         +  + +   V+ +    ++ + V           +   
Sbjct: 278 SDLLTLSQLESGAVPLEARSVKVQEIAERVVVLLERKIRERGIIVDLAGLKDAPSVMADP 337

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
               ++++NL   A    P GG VT+S  D +     +++  G      +    F +   
Sbjct: 338 GRLEQVIVNLLDNAVKYTPAGGSVTLSAADREESVTIAVQDTGIGIPSKDLSRIFERFYR 397

Query: 170 GN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +           +    V  +       +  +            L +
Sbjct: 398 VDSARSRDEGGTGLGLSIVKHIVQLQGGTVSAQSS-GQGSTFFVTLNR 444


>gi|186683296|ref|YP_001866492.1| Chase sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
 gi|186465748|gb|ACC81549.1| Chase sensor signal transduction histidine kinase [Nostoc
           punctiforme PCC 73102]
          Length = 441

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 59/231 (25%), Gaps = 24/231 (10%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLSSM 58
               LS + L     S + H+  +P+  I  S +LL +   +       + +  I+ S+ 
Sbjct: 199 QEKELSELKLR--FFSMVSHEFRTPLSIILGSAQLLAQSNQQWTEEKKLKNLYRIQSSAR 256

Query: 59  SAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           S                     +   +D      ++ +  +        ++    G    
Sbjct: 257 SINQLLTDILTLTRAEAGKLEFHPELIDLEAFCINLIEDFQFSNQQQHTIKFISQGNCTH 316

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +   +   L      A    P    + + +    +   F +K NG      E    +
Sbjct: 317 AKLDENILYSVLSNLLSNAIKYSPPEESIFLILSCESSAIFFQVKDNGIGIPC-EFQEHL 375

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +          I    +    V      +   +  +         +    
Sbjct: 376 FEPFHRANNVGKIVGSGLGLAVVKKCLEIHHGEIYVDSEVGGGTSFTIKFP 426


>gi|332998333|gb|EGK17932.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           VA-6]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|332752371|gb|EGJ82761.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           4343-70]
 gi|333000305|gb|EGK19888.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-218]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|327251301|gb|EGE62990.1| aerobic respiration control sensor protein arcB [Escherichia coli
           STEC_7v]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|324018338|gb|EGB87557.1| PAS domain S-box [Escherichia coli MS 117-3]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|323979073|gb|EGB74151.1| hsp90-like protein [Escherichia coli TW10509]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|323951271|gb|EGB47146.1| hsp90-like protein [Escherichia coli H252]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|323936096|gb|EGB32390.1| hsp90-like protein [Escherichia coli E1520]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|320661959|gb|EFX29367.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|320174576|gb|EFW49712.1| Aerobic respiration control sensor protein arcB [Shigella
           dysenteriae CDC 74-1112]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|312972515|ref|ZP_07786689.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|310334892|gb|EFQ01097.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1827-70]
 gi|332754418|gb|EGJ84784.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2747-71]
          Length = 595

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 105 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 164

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 165 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 224

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 225 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 284

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 285 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 320


>gi|300918972|ref|ZP_07135527.1| PAS domain S-box [Escherichia coli MS 115-1]
 gi|300413914|gb|EFJ97224.1| PAS domain S-box [Escherichia coli MS 115-1]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|301022112|ref|ZP_07186038.1| PAS domain S-box [Escherichia coli MS 69-1]
 gi|300397708|gb|EFJ81246.1| PAS domain S-box [Escherichia coli MS 69-1]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGNPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|297518051|ref|ZP_06936437.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           OP50]
          Length = 724

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|297530277|ref|YP_003671552.1| histidine kinase [Geobacillus sp. C56-T3]
 gi|297253529|gb|ADI26975.1| histidine kinase [Geobacillus sp. C56-T3]
          Length = 367

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 59/217 (27%), Gaps = 14/217 (6%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             + L+  + S   H+  +P+ AI   ++LL         + +I         R+     
Sbjct: 152 DRLTLLGQMSSSFVHEFRNPLTAIIGFIQLLKFEHPHLPYLDIIDHELQQLKFRISQFLH 211

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                              L  + +          VD  V +  +        +  ++L+
Sbjct: 212 ASRKEIVESEKETFSLRQLLEEIIEFLYATIVDSDVDLSVAIDESIHIFAYKDQLRQVLV 271

Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           N+ + +  ++    K        +      I  +  NG      +    I +    +   
Sbjct: 272 NILLNSIEAVKEREKPRRINIAARCQDGSIIIEIANNGPSI-PADIVETIFEPFFTTKKL 330

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I  Y    +  ++   +      D     S  L 
Sbjct: 331 GTGIGLYICKKVIEDHGGDICCFSN-DKVTTFSIRLP 366


>gi|269139680|ref|YP_003296381.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|267985341|gb|ACY85170.1| integral membrane sensor hybrid histidine kinase [Edwardsiella
           tarda EIB202]
 gi|304559549|gb|ADM42213.1| Two-component sensor protein RcsC [Edwardsiella tarda FL6-60]
          Length = 956

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 24/221 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++  + + H++ +P+  I  +L+LL    + +EV +L+   S S+ + LK +     ++ 
Sbjct: 474 SMFLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSK 533

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +     V  + I                     ++               ++L
Sbjct: 534 IESEQLKIEPGRFVPREVIPHIIGNYLPLVVRKRLTLYCFIEPDVPEALSGDIMRIQQVL 593

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173
            NL   A       G + +  + +     F ++  G      +   ++ D   +      
Sbjct: 594 SNLLSNAIKFTDT-GCIILQARVNDFYLEFRVRDTGLGIPPRDVL-RLFDPFFQVGSGVQ 651

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       L       +  E       + +  L 
Sbjct: 652 RHFHGTGLGLAICEKLVSLMDGDIAVESSPGLGSIFTIRLP 692


>gi|256024215|ref|ZP_05438080.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           4_1_40B]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|254163152|ref|YP_003046260.1| aerobic respiration control sensor protein ArcB [Escherichia coli B
           str. REL606]
 gi|253975053|gb|ACT40724.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli B str. REL606]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|238757994|ref|ZP_04619175.1| hypothetical protein yaldo0001_8720 [Yersinia aldovae ATCC 35236]
 gi|238703748|gb|EEP96284.1| hypothetical protein yaldo0001_8720 [Yersinia aldovae ATCC 35236]
          Length = 900

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 650 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 709

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 710 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSYHQIKVELP 769

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I            +  NG      +
Sbjct: 770 DEIVLINCDGSLLERVFINLLENAHKYAGNTASLGIRAIVQGEWLNVEVWDNGPGVTAGQ 829

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   D        L 
Sbjct: 830 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQDGGASFRFTLP 884


>gi|255039050|ref|YP_003089671.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254951806|gb|ACT96506.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 710

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 68/233 (29%), Gaps = 25/233 (10%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--- 63
               +        +++ H+I +P+ AI    +L+D   ++ +  + +     S+ I    
Sbjct: 325 MATEAAKQKGEFLAQVTHEIRTPLNAIIGFSQLMDTQRLDGQEKESVDAIQSSSRILLTL 384

Query: 64  -----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--D 110
                         + L +     VD++  +  + +V+     ++   +++         
Sbjct: 385 VNDLLDFSKLESGKLTLQYQPFNPVDAVNEVVALMRVLASEKNIEIEPKIAIGNRVCLLG 444

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++++NL   A    P  GKV         +  K      +K +G          
Sbjct: 445 DEFRVKQVVINLLSNAIKFTPARGKVVVEASLDQSEGQKKCLKIRVKDSGIGIAPEHLKE 504

Query: 166 QI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   G   +      +       +   +  ++  E +          + 
Sbjct: 505 IFEDFKQIGAASAGKPGTGLGLAICKRIVELHGGKISVESVVGKGSEFKIGIP 557


>gi|237706038|ref|ZP_04536519.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
 gi|226899078|gb|EEH85337.1| aerobic respiration control sensor protein ArcB [Escherichia sp.
           3_2_53FAA]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|194434503|ref|ZP_03066763.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|194417282|gb|EDX33391.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae 1012]
 gi|320181485|gb|EFW56403.1| Aerobic respiration control sensor protein arcB [Shigella boydii
           ATCC 9905]
 gi|332086332|gb|EGI91484.1| aerobic respiration control sensor protein arcB [Shigella boydii
           5216-82]
 gi|332086398|gb|EGI91545.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 155-74]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|91212635|ref|YP_542621.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|117625502|ref|YP_858825.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215488526|ref|YP_002330957.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O127:H6 str. E2348/69]
 gi|218560280|ref|YP_002393193.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           S88]
 gi|306816448|ref|ZP_07450580.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|312968451|ref|ZP_07782660.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|331649010|ref|ZP_08350098.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
 gi|91074209|gb|ABE09090.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UTI89]
 gi|115514626|gb|ABJ02701.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           APEC O1]
 gi|215266598|emb|CAS11037.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O127:H6 str. E2348/69]
 gi|218367049|emb|CAR04820.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli S88]
 gi|281180252|dbj|BAI56582.1| aerobic respiration sensor-response protein [Escherichia coli SE15]
 gi|294492786|gb|ADE91542.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IHE3034]
 gi|305850013|gb|EFM50472.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           NC101]
 gi|307625191|gb|ADN69495.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UM146]
 gi|312286669|gb|EFR14580.1| aerobic respiration control sensor protein arcB [Escherichia coli
           2362-75]
 gi|315288991|gb|EFU48389.1| PAS domain S-box [Escherichia coli MS 110-3]
 gi|323957642|gb|EGB53356.1| hsp90-like protein [Escherichia coli H263]
 gi|324008722|gb|EGB77941.1| PAS domain S-box [Escherichia coli MS 57-2]
 gi|330909262|gb|EGH37776.1| aerobic respiration control sensor protein arcB [Escherichia coli
           AA86]
 gi|331042757|gb|EGI14899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M605]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|82778524|ref|YP_404873.1| aerobic respiration control sensor protein ArcB [Shigella
           dysenteriae Sd197]
 gi|309785538|ref|ZP_07680169.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
 gi|81242672|gb|ABB63382.1| aerobic respiration sensor-response protein [Shigella dysenteriae
           Sd197]
 gi|308926658|gb|EFP72134.1| aerobic respiration control sensor protein arcB [Shigella
           dysenteriae 1617]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|74313747|ref|YP_312166.1| aerobic respiration control sensor protein ArcB [Shigella sonnei
           Ss046]
 gi|73857224|gb|AAZ89931.1| histidine protein kinase/phosphatase [Shigella sonnei Ss046]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|73668585|ref|YP_304600.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
 gi|72395747|gb|AAZ70020.1| sensory transduction histidine kinase [Methanosarcina barkeri str.
           Fusaro]
          Length = 1046

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 70/245 (28%), Gaps = 34/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            ++    + +  L A           + + H++ +P+ +I    ++L E     + ++  
Sbjct: 484 RRSEEKLIQA-KLEAEEANNSKSEFLANVSHELRTPLNSIIGFSDILIEKVFGELNEKQF 542

Query: 51  QLIRLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           + +   S S                     M L +           +  +   +     +
Sbjct: 543 RYVNNISTSGKHLLVLINDILDLSKVEAGKMELHYSEFSIDPVFEEVKAVLFPLIQAKPL 602

Query: 97  DKRVQVSWTGEK-IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           +    V               +IL NL   A    P GGKV++  ++S N  + S+   G
Sbjct: 603 EVTFNVEPDFTTLEADRGRLIQILYNLISNAIKFTPNGGKVSVYCKESGNRALISVIDTG 662

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 E   ++                   +    V  + + ++  +  E         
Sbjct: 663 IGI-SAEDQVKLFQPFTQLDASTSRQYCGTGLGLALVKKIVNLHQGDIWVESDPGKGSNF 721

Query: 210 SALLE 214
           +  L 
Sbjct: 722 TFALP 726


>gi|83311055|ref|YP_421319.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945896|dbj|BAE50760.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 514

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 56/228 (24%), Gaps = 23/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR- 68
            +  L A   + + H+I +P+  +   L LL    +  +    +  +  SA   L  +  
Sbjct: 144 ETARLKANFLATMSHEIRTPMNGVLGMLHLLTGSPLTPDQRDHLETAQSSARALLAIIND 203

Query: 69  ----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSR 113
                              D    L ++  +++            R+  +    +     
Sbjct: 204 ILDFSKLEAGQMKLEATKFDLHRLLEEMVALLKGAARDKGLTLSLRIADTVPRYQAGDPT 263

Query: 114 ERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG- 170
              ++L NL   A     +G         +   +   F +   G             +  
Sbjct: 264 RLRQVLTNLMGNAVKFTEKGDVAVSVEPEESDSSRLRFEVADTGIGIEPAAAPALFSEFV 323

Query: 171 ----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++        +       L       +  + I          L 
Sbjct: 324 QADSSITRRFGGTGLGLSICKRLVEMMGGEIGFDSIPGEGTTFHFTLP 371


>gi|15803750|ref|NP_289784.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 EDL933]
 gi|15833343|ref|NP_312116.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. Sakai]
 gi|168751616|ref|ZP_02776638.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754192|ref|ZP_02779199.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763747|ref|ZP_02788754.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|168769066|ref|ZP_02794073.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|168777265|ref|ZP_02802272.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781354|ref|ZP_02806361.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786096|ref|ZP_02811103.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|168800924|ref|ZP_02825931.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208808181|ref|ZP_03250518.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208813912|ref|ZP_03255241.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820710|ref|ZP_03261030.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397926|ref|YP_002272680.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327107|ref|ZP_03443190.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795159|ref|YP_003079996.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14359]
 gi|261228221|ref|ZP_05942502.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255077|ref|ZP_05947610.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. FRIK966]
 gi|17366312|sp|P58363|ARCB_ECO57 RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|12517831|gb|AAG58344.1|AE005549_1 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase, sensor for arcA [Escherichia coli
           O157:H7 str. EDL933]
 gi|13363562|dbj|BAB37512.1| aerobic respiration sensor-response protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187767463|gb|EDU31307.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014362|gb|EDU52484.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4113]
 gi|189001033|gb|EDU70019.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4076]
 gi|189358652|gb|EDU77071.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361737|gb|EDU80156.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366120|gb|EDU84536.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373850|gb|EDU92266.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC869]
 gi|189376853|gb|EDU95269.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC508]
 gi|208727982|gb|EDZ77583.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735189|gb|EDZ83876.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740833|gb|EDZ88515.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4042]
 gi|209159326|gb|ACI36759.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757940|gb|ACI77282.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757942|gb|ACI77283.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757946|gb|ACI77285.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|217319474|gb|EEC27899.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594559|gb|ACT73920.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli O157:H7 str. TW14359]
 gi|320189563|gb|EFW64222.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. EC1212]
 gi|326337911|gb|EGD61745.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1125]
 gi|326347480|gb|EGD71205.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O157:H7 str. 1044]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|13472735|ref|NP_104302.1| two-component sensor KdpD [Mesorhizobium loti MAFF303099]
 gi|14023482|dbj|BAB50088.1| two-component sensor; KdpD [Mesorhizobium loti MAFF303099]
          Length = 907

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 59/232 (25%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------LS 56
                  +  L + L + I HD+ +P+ AI  +   L E   +                S
Sbjct: 658 RAKLAAEADRLRSALLTSISHDLKTPLSAIMGAAGTLKEFAPDLPEQDRAELLSTVIDES 717

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKID 110
                     + +    +G+++    L  +  ++   +        + +++V    +   
Sbjct: 718 ERLNRFIANLLDMTKIESGAMEPNYALHYVGDIVGTALNRARKITSEHKIEVDIPPDLPM 777

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           L  +     ++L NL   A    P G  + +         I  +   G      +     
Sbjct: 778 LKLDPVLFEQVLFNLLDNASKYSPPGSTIRLQGWADNGSVIVQIMDEGPGIPSHDLERVF 837

Query: 168 VDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
                    D       +               +      D      +  + 
Sbjct: 838 DTFYRVRKGDQVRAGTGLGLSICRGFVESMGGTISAANRTDRPGAAFTIRMP 889


>gi|187730817|ref|YP_001881876.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
 gi|187427809|gb|ACD07083.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           CDC 3083-94]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|124266471|ref|YP_001020475.1| multi-sensor signal transduction histidine kinase [Methylibium
           petroleiphilum PM1]
 gi|124259246|gb|ABM94240.1| multi-sensor signal transduction histidine kinase [Methylibium
           petroleiphilum PM1]
          Length = 460

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           ++++I     +  +     + + H+I +P+  +   +E +            V+ L+   
Sbjct: 196 LSQDITERERADAMRRDFVANVSHEIRTPLTVLSGFIETMSTLPLTEVESRRVLVLMSQQ 255

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +      +  +       GS             +   +  D R              + A
Sbjct: 256 AQRMQTLVSDLLTLAQLEGSPRPAADRWIAVSRLLQLVEADARTLSQGRHTLTLAGDDSA 315

Query: 117 KIL----------LNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKF- 164
           +I            NL   A    P GG++ IS +  +     F+++  G          
Sbjct: 316 QIAGAETELLSALTNLANNAVRYTPEGGRIDISWRRLADGSGEFAVRDTGLGIEREHLPR 375

Query: 165 --TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     G+         +    V  +A  +   L  +           +  
Sbjct: 376 LTERFYRVDGSRSRDTGGTGLGLSIVKHVAQRHGGELDVQSEPGKGSTFRLVFP 429


>gi|24114498|ref|NP_709008.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 301]
 gi|30064547|ref|NP_838718.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           2a str. 2457T]
 gi|49176326|ref|YP_026207.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|82545553|ref|YP_409500.1| aerobic respiration control sensor protein ArcB [Shigella boydii
           Sb227]
 gi|89109973|ref|AP_003753.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. W3110]
 gi|110807075|ref|YP_690595.1| aerobic respiration control sensor protein ArcB [Shigella flexneri
           5 str. 8401]
 gi|157159325|ref|YP_001464688.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|170018540|ref|YP_001723494.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ATCC 8739]
 gi|170082744|ref|YP_001732064.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170683438|ref|YP_001745482.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188492706|ref|ZP_02999976.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|191168636|ref|ZP_03030418.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|193065369|ref|ZP_03046440.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|193070312|ref|ZP_03051255.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194429137|ref|ZP_03061667.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194439214|ref|ZP_03071295.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209920685|ref|YP_002294769.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SE11]
 gi|218555780|ref|YP_002388693.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI1]
 gi|218696915|ref|YP_002404582.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           55989]
 gi|218701979|ref|YP_002409608.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           IAI39]
 gi|218706830|ref|YP_002414349.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMN026]
 gi|238902312|ref|YP_002928108.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|253771956|ref|YP_003034787.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038375|ref|ZP_04872433.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|256018871|ref|ZP_05432736.1| aerobic respiration control sensor protein ArcB [Shigella sp. D9]
 gi|260857337|ref|YP_003231228.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|260869961|ref|YP_003236363.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|291284584|ref|YP_003501402.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|293406819|ref|ZP_06650745.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|293412581|ref|ZP_06655304.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293416639|ref|ZP_06659278.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|293449543|ref|ZP_06663964.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|298382560|ref|ZP_06992157.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|300817535|ref|ZP_07097751.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300897978|ref|ZP_07116354.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300904402|ref|ZP_07122250.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300926045|ref|ZP_07141867.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300929906|ref|ZP_07145348.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300938126|ref|ZP_07152900.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300948865|ref|ZP_07162930.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|301025888|ref|ZP_07189375.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|301326357|ref|ZP_07219721.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301644924|ref|ZP_07244893.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|307139896|ref|ZP_07499252.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|307313085|ref|ZP_07592711.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|309793789|ref|ZP_07688215.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|331643908|ref|ZP_08345039.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331654814|ref|ZP_08355814.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331670037|ref|ZP_08370882.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331679289|ref|ZP_08379961.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331684857|ref|ZP_08385449.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332279959|ref|ZP_08392372.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|83287862|sp|P0AEC3|ARCB_ECOLI RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|83287863|sp|P0AEC4|ARCB_SHIFL RecName: Full=Aerobic respiration control sensor protein ArcB
 gi|40951|emb|CAA37397.1| arcB [Escherichia coli]
 gi|24053684|gb|AAN44715.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 301]
 gi|30042806|gb|AAP18529.1| histidine protein kinase/phosphatase, aerobic respiration
           sensor-response protein, sensor for arcA [Shigella
           flexneri 2a str. 2457T]
 gi|48994928|gb|AAT48172.1| aerobic respiration control sensor histidine protein kinase,
           cognate to two-component response regulators ArcA and
           RssB [Escherichia coli str. K-12 substr. MG1655]
 gi|81246964|gb|ABB67672.1| aerobic respiration sensor-response protein [Shigella boydii Sb227]
 gi|85676004|dbj|BAE77254.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K12 substr. W3110]
 gi|110616623|gb|ABF05290.1| aerobic respiration sensor-response protein [Shigella flexneri 5
           str. 8401]
 gi|157081355|gb|ABV21063.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E24377A]
 gi|169753468|gb|ACA76167.1| multi-sensor hybrid histidine kinase [Escherichia coli ATCC 8739]
 gi|169890579|gb|ACB04286.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli str. K-12 substr. DH10B]
 gi|170521156|gb|ACB19334.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           SMS-3-5]
 gi|188487905|gb|EDU63008.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           53638]
 gi|190901330|gb|EDV61097.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B7A]
 gi|192927010|gb|EDV81633.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E22]
 gi|192956371|gb|EDV86831.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           E110019]
 gi|194412862|gb|EDX29154.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B171]
 gi|194421910|gb|EDX37916.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           101-1]
 gi|209757938|gb|ACI77281.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209757944|gb|ACI77284.1| aerobic respiration sensor-response protein [Escherichia coli]
 gi|209913944|dbj|BAG79018.1| aerobic respiration sensor-response protein [Escherichia coli SE11]
 gi|218353647|emb|CAU99866.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli 55989]
 gi|218362548|emb|CAR00172.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI1]
 gi|218371965|emb|CAR19821.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli IAI39]
 gi|218433927|emb|CAR14844.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli UMN026]
 gi|222034927|emb|CAP77670.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LF82]
 gi|226839999|gb|EEH72020.1| multi-sensor hybrid histidine kinase [Escherichia sp. 1_1_43]
 gi|238861439|gb|ACR63437.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BW2952]
 gi|242378753|emb|CAQ33543.1| ArcB sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253323000|gb|ACT27602.1| multi-sensor hybrid histidine kinase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253979209|gb|ACT44879.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli BL21(DE3)]
 gi|257755986|dbj|BAI27488.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O26:H11 str. 11368]
 gi|257766317|dbj|BAI37812.1| hybrid sensory histidine kinase ArcB in two-component regulatory
           system with ArcA [Escherichia coli O111:H- str. 11128]
 gi|260447763|gb|ACX38185.1| multi-sensor hybrid histidine kinase [Escherichia coli DH1]
 gi|281602592|gb|ADA75576.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           2002017]
 gi|290764457|gb|ADD58418.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           O55:H7 str. CB9615]
 gi|291322633|gb|EFE62062.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B088]
 gi|291426825|gb|EFE99857.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1412]
 gi|291431995|gb|EFF04978.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           B185]
 gi|291469352|gb|EFF11843.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298277700|gb|EFI19216.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           FVEC1302]
 gi|299879910|gb|EFI88121.1| PAS domain S-box [Escherichia coli MS 196-1]
 gi|300358326|gb|EFJ74196.1| PAS domain S-box [Escherichia coli MS 198-1]
 gi|300403676|gb|EFJ87214.1| PAS domain S-box [Escherichia coli MS 84-1]
 gi|300417903|gb|EFK01214.1| PAS domain S-box [Escherichia coli MS 182-1]
 gi|300451670|gb|EFK15290.1| PAS domain S-box [Escherichia coli MS 116-1]
 gi|300456889|gb|EFK20382.1| PAS domain S-box [Escherichia coli MS 21-1]
 gi|300462192|gb|EFK25685.1| PAS domain S-box [Escherichia coli MS 187-1]
 gi|300529833|gb|EFK50895.1| PAS domain S-box protein [Escherichia coli MS 107-1]
 gi|300846921|gb|EFK74681.1| PAS domain S-box [Escherichia coli MS 78-1]
 gi|301076775|gb|EFK91581.1| PAS domain S-box [Escherichia coli MS 146-1]
 gi|306906996|gb|EFN37504.1| multi-sensor hybrid histidine kinase [Escherichia coli W]
 gi|308122746|gb|EFO60008.1| PAS domain S-box [Escherichia coli MS 145-7]
 gi|309703636|emb|CBJ02976.1| aerobic respiration control protein (bifunctional two-component
           sensor kinase/response regulator) [Escherichia coli ETEC
           H10407]
 gi|312947767|gb|ADR28594.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|313648546|gb|EFS12988.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2a str. 2457T]
 gi|315062516|gb|ADT76843.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli W]
 gi|315137796|dbj|BAJ44955.1| aerobic respiration control sensor protein arcB [Escherichia coli
           DH1]
 gi|315257138|gb|EFU37106.1| PAS domain S-box [Escherichia coli MS 85-1]
 gi|315617017|gb|EFU97627.1| aerobic respiration control sensor protein arcB [Escherichia coli
           3431]
 gi|320186696|gb|EFW61420.1| Aerobic respiration control sensor protein arcB [Shigella flexneri
           CDC 796-83]
 gi|320202124|gb|EFW76699.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           EC4100B]
 gi|320640281|gb|EFX09853.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. G5101]
 gi|320645578|gb|EFX14587.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. 493-89]
 gi|320650888|gb|EFX19345.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H- str. H 2687]
 gi|320656269|gb|EFX24181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320666794|gb|EFX33773.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154425|gb|EFZ40626.1| aerobic respiration control sensor protein arcB [Escherichia coli
           EPECa14]
 gi|323162902|gb|EFZ48737.1| aerobic respiration control sensor protein arcB [Escherichia coli
           E128010]
 gi|323173530|gb|EFZ59159.1| aerobic respiration control sensor protein arcB [Escherichia coli
           LT-68]
 gi|323178614|gb|EFZ64190.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1180]
 gi|323183164|gb|EFZ68562.1| aerobic respiration control sensor protein arcB [Escherichia coli
           1357]
 gi|323376896|gb|ADX49164.1| multi-sensor hybrid histidine kinase [Escherichia coli KO11]
 gi|323941690|gb|EGB37869.1| hsp90-like protein [Escherichia coli E482]
 gi|323946936|gb|EGB42952.1| hsp90-like protein [Escherichia coli H120]
 gi|323961135|gb|EGB56749.1| hsp90-like protein [Escherichia coli H489]
 gi|323966390|gb|EGB61824.1| hsp90-like protein [Escherichia coli M863]
 gi|323970227|gb|EGB65498.1| hsp90-like protein [Escherichia coli TA007]
 gi|324119575|gb|EGC13457.1| hsp90-like protein [Escherichia coli E1167]
 gi|331037379|gb|EGI09603.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H736]
 gi|331048196|gb|EGI20273.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           M718]
 gi|331062950|gb|EGI34864.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           TA271]
 gi|331073354|gb|EGI44677.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H591]
 gi|331078472|gb|EGI49678.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           H299]
 gi|332090932|gb|EGI96023.1| aerobic respiration control sensor protein arcB [Shigella boydii
           3594-74]
 gi|332102311|gb|EGJ05657.1| histidine protein kinase/phosphatase [Shigella sp. D9]
 gi|332345167|gb|AEE58501.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           UMNK88]
 gi|332752897|gb|EGJ83282.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-671]
 gi|332765209|gb|EGJ95436.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           2930-71]
 gi|332999289|gb|EGK18875.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-272]
 gi|333014521|gb|EGK33868.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-304]
 gi|333014660|gb|EGK34006.1| aerobic respiration control sensor protein arcB [Shigella flexneri
           K-227]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|26249796|ref|NP_755836.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           CFT073]
 gi|110643451|ref|YP_671181.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|191174415|ref|ZP_03035918.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227887931|ref|ZP_04005736.1| histidine kinase [Escherichia coli 83972]
 gi|300979941|ref|ZP_07174793.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300990940|ref|ZP_07179392.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|301047943|ref|ZP_07194988.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|26110224|gb|AAN82410.1|AE016767_170 Aerobic respiration control sensor protein arcB [Escherichia coli
           CFT073]
 gi|110345043|gb|ABG71280.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           536]
 gi|190905305|gb|EDV64941.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           F11]
 gi|227835327|gb|EEJ45793.1| histidine kinase [Escherichia coli 83972]
 gi|300300175|gb|EFJ56560.1| PAS domain S-box [Escherichia coli MS 185-1]
 gi|300307876|gb|EFJ62396.1| PAS domain S-box [Escherichia coli MS 200-1]
 gi|300407016|gb|EFJ90554.1| PAS domain S-box protein [Escherichia coli MS 45-1]
 gi|307555303|gb|ADN48078.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ABU 83972]
 gi|315294870|gb|EFU54209.1| PAS domain S-box [Escherichia coli MS 153-1]
 gi|323189169|gb|EFZ74453.1| aerobic respiration control sensor protein arcB [Escherichia coli
           RN587/1]
 gi|324012146|gb|EGB81365.1| PAS domain S-box [Escherichia coli MS 60-1]
          Length = 778

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|320353090|ref|YP_004194429.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320121592|gb|ADW17138.1| PAS/PAC sensor signal transduction histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 740

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 54/224 (24%), Gaps = 20/224 (8%)

Query: 10  SSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLIRLSSM 58
            +  L A   +  RI H+I +P+  I  S + L +  ++         D+    I     
Sbjct: 515 KAQRLAAWQEVARRIAHEIKNPLTPIQLSAQRLRKRYLDTIGENRAIFDQCTATIINQVD 574

Query: 59  SAIIRLKFMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                +                     L     V+         +         +   + 
Sbjct: 575 EIKNLVSEFSDFARMPQLHKERKNLGLLVQEVVVLYQEAHKQLTITCHADPALPEFLFDA 634

Query: 116 AKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            +I   L  +   ++          VT+    +       +   G      E   +I + 
Sbjct: 635 VQIKRVLINLLDNAVSVLAGGGNIAVTLGPGGNGATVRLEVADTGPGI-SDEVKLRIFEP 693

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E+   +          V +  L 
Sbjct: 694 YFSTRKSGTGLGLAIAHTIVSEHGGSIRVYDNTPTGAVFAVELP 737


>gi|320108083|ref|YP_004183673.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319926604|gb|ADV83679.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 682

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            +     L S  L A+  L S I H+I +P+ ++ N L L+  +  +  +    +  +  
Sbjct: 425 KQAEAALLQSEKLAAVGRLASSISHEINNPLASVTNLLYLIRSDESMSPQSRDYLETADR 484

Query: 59  SAII---------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             I          R                +  +  +         ++ + + +   +  
Sbjct: 485 ELIRVSQVAAQTLRFHRQSTRPMTIAPETLMDEVLALYGGRLVNFNINVQREYAPDVQLT 544

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLARFPEK 163
               +  ++L NL   A   +  GG + +  + S            ++   G        
Sbjct: 545 CYEGDVRQVLNNLIGNAVDVMRNGGWLRVRTRPSTLWSTGRAGVRITVADTGGGMTPKVA 604

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII---DDHNVVLSALLE 214
                        +   +  +    + H+++  L        +    V +  L 
Sbjct: 605 KHIFEAFFTTKGNNGTGLGLWISSRIVHKHQGALKVRTSTANEHRGSVFTLWLP 658


>gi|255263227|ref|ZP_05342569.1| sensory box histidine kinase/response regulator [Thalassiobium sp.
           R2A62]
 gi|255105562|gb|EET48236.1| sensory box histidine kinase/response regulator [Thalassiobium sp.
           R2A62]
          Length = 835

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 58/238 (24%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA++         L     + + H+I +P+  +  ++ LL +  ++    + +     S 
Sbjct: 342 MARDKALA--GEKLKTDFLATMSHEIRTPLNGLLGNMSLLRDTHLDTAQDRYVGYMETSG 399

Query: 61  IIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
            + +  +                  G V+    L DI        +        +     
Sbjct: 400 RLLMNHISDVLDITRYDAGKLDTRLGPVNISALLQDIVDNQSSAASKHETSLTWKWLSEE 459

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFP 161
           T   +        +++NL   A     R      V    +         +K  G      
Sbjct: 460 TSWILSDHDRLQHVMINLIGNAVKFTKRGRVDITVEEIKEHDNPTLQIQIKDTGPGMTED 519

Query: 162 EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   D      +    +    +         +     +  E            L 
Sbjct: 520 LVKSVFDDFVTGDTSYHRDVSGTGLGLSIAKRFVNALGGDIRVESKAGFGSTFWVTLP 577


>gi|302873564|ref|YP_003842197.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|307688256|ref|ZP_07630702.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
 gi|302576421|gb|ADL50433.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium cellulovorans 743B]
          Length = 483

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 75/238 (31%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           +  ++       +   L+ S I HD+ +PI +I   +E +LD V   +E +         
Sbjct: 234 LKDSVTLKSKYDENRRLIVSSISHDLKTPITSIKGYVEGILDGVANTEEKVFDYLKIINM 293

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
               +  +         +D      + E+        D   +     +K ++        
Sbjct: 294 KADYMNVIIDDLLLHSKLDLNQIPYNFEKTDIVNYFEDCICECEGELKKYNIDMNLDNQL 353

Query: 116 -------------AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP 161
                         ++++N+   A   + +  G++ I ++++    I  ++ NG      
Sbjct: 354 VTTRMVKIDREKLRRVIINIIDNARKYMDKEYGQINIDLRETNTSIIIEIRDNGMGIDEE 413

Query: 162 E---KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           E    F +    +          +       +  ++K R+  +        +   L K
Sbjct: 414 EVNKIFNRFYRIDKSRNQTKGSGLGLAIAKQIVEDHKGRIWAKSHGGEGTSILMSLPK 471


>gi|262199012|ref|YP_003270221.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262082359|gb|ACY18328.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 602

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 68/241 (28%), Gaps = 28/241 (11%)

Query: 1   MAKNI--CFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--- 48
           MA+ I     L S       L A+  + + + H++ +P+  +    +LL E   E     
Sbjct: 357 MARRIGEREKLQSALARGDRLAAVGTMAASVAHEVNNPLTTVLGYAKLLLEDKPEQHADR 416

Query: 49  -VMQLIRLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             ++LI   +      +  +             G  D    L     ++   +   +   
Sbjct: 417 PGLELIAEEAERMKGIIGTLLDYSRSERAPRPEGRTDVNESLRHTAALMVPQLRRMRVEL 476

Query: 102 VSWTGEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKIN 154
               GE +      S    ++ +NL   A  S+   G                +  +   
Sbjct: 477 ELELGEDLPPAAAGSHALQQVFVNLVQNAAQSMLPAGGPVRVSSALGPGKVALVVQVSDE 536

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALL 213
           G      E+  +I +  V + +    +       L       +   +           ++
Sbjct: 537 GPGVPEAERK-RIFEPFVTTKVSGTGLGLAVCKHLVVSFGGSIEVSDNASGRGATFRVVI 595

Query: 214 E 214
            
Sbjct: 596 P 596


>gi|307152019|ref|YP_003887403.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306982247|gb|ADN14128.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 398

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 60/245 (24%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSM-----------DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           M + +   +               L     S + HD  +P+  I  S  LL++       
Sbjct: 138 MNEKLQMRVEERTAELTKAKEINQLKTEFVSMLSHDFRNPLNTILLSAGLLEDCRDRLSQ 197

Query: 50  MQLIRLSSMSAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
            Q +    M                                ++      +I Q     I+
Sbjct: 198 EQQLNYFQMIRSAIKDMDQLLTEVLIIGRADAGRLKFNPVPLNLKEFCANILQAFRLNIS 257

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLK 152
              ++     G   D   +   +   L      A    P GG + + + + K + IF+++
Sbjct: 258 EAHQLIFKADGNFNDGLWDDNLLRHILNNLLGNALKYSPNGGIIRLDLIEGKGQVIFTVQ 317

Query: 153 INGNLARFPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             G                  + +D      +    V      +   +  +         
Sbjct: 318 DQGIGIPPEAIEGLFKPFFRATNVDNIAGTGLGLAIVQRCVETHGGYVEVKSQVGVGTTF 377

Query: 210 SALLE 214
              L 
Sbjct: 378 MVTLP 382


>gi|206972722|ref|ZP_03233659.1| putative sensor histidine kinase [Bacillus cereus AH1134]
 gi|206732355|gb|EDZ49540.1| putative sensor histidine kinase [Bacillus cereus AH1134]
          Length = 337

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + +       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 95  LEQVQIEAKRSEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKVLYM 154

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 155 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   I       +I+ NL   A      G  + + + ++  E    +   G      + 
Sbjct: 215 STCPIIADHLSIMRIIGNLMKNAIYYGKDGKTIGVELLEADAEYKLHIWDQGPGIPQHDL 274

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E            + K
Sbjct: 275 QNIFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSVPK 331


>gi|157273376|gb|ABV27275.1| alkaline phosphatase synthesis sensor protein PhoR [Candidatus
           Chloracidobacterium thermophilum]
          Length = 363

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 15/218 (6%), Positives = 63/218 (28%), Gaps = 22/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRL----- 69
           + + H++ +P+ +I   +E L      +     + +Q+I   +      ++ +       
Sbjct: 133 ANLSHELRTPLTSILAYVETLLNGAIYDNENNIQFLQIINKHATRMQNLVRDIADLSAIE 192

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
                    +++    + ++  ++       +    +     + +  +   +   L  + 
Sbjct: 193 AGEFKLEPVTIELKAFVDNLAVLVLPEATTRQVTFRNEVPAGVQVYADPQALEQILMNLI 252

Query: 127 HASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TID 177
             ++         V  +  +S    + +++  G           F ++   +      + 
Sbjct: 253 INAVKFNRPGGEVVVTANFESDVRTVIAVRDTGIGIEAKHLGRIFERLYRVDKSRSQEVG 312

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L   +   +  +            L +
Sbjct: 313 GTGLGLAIVKHLVLNHGGDISVDSTPGVGSEFRVRLPR 350


>gi|120555156|ref|YP_959507.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120325005|gb|ABM19320.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 956

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 27/236 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               L +  + +   + + H+I +P+  I    ELL +  +  +    +     S+ I L
Sbjct: 282 RKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLPRQQRDHLNTIRKSSEILL 341

Query: 65  KFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK 108
             +     ++                   + ++  ++              V        
Sbjct: 342 TIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPDNI 401

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPE 162
           +       +++ NL   A      G             + ++     S+  +G      +
Sbjct: 402 MGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEDEDTEHNRVTLRLSITDSGVGLSRAQ 461

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           + +     +              +       L  E   ++  E            L
Sbjct: 462 QQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517


>gi|329571903|gb|EGG53581.1| PAS domain S-box protein [Enterococcus faecalis TX1467]
          Length = 591

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|317154224|ref|YP_004122272.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944475|gb|ADU63526.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 881

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 38/252 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------- 49
           + +     +   +L +   S + H++ +P+ ++    +++        +           
Sbjct: 427 LRQANRRLMELDELKSAFLSSVSHELRTPLTSLLGFSKIIRRDFTRTFMHLADTAQAQRL 486

Query: 50  -------MQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQ-----V 89
                  + +I          +                    +D    +          +
Sbjct: 487 GERIQSNLDIIGSEGERLTRLINDVLDLSRIESGQEDWRFTEIDLAGCVNRAVSAASGLL 546

Query: 90  IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
                      ++              ++L+NL   A      G        D +     
Sbjct: 547 SPKPQVRLTIRRMDPVPLVHADQDRIHQVLMNLLSNAVKFTDFGEVAVDLYLDDQGMARI 606

Query: 150 SLKINGNLARFPEKFTQIVDGNV-------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202
            ++  G   +           +                +       +      R+  E  
Sbjct: 607 RVEDTGRGIKARYLEQIFDKFHQVHRGDTLTEKPAGTGLGLAISRQIVEHYHGRIWAESK 666

Query: 203 DDHNVVLSALLE 214
                V++  L 
Sbjct: 667 LGRGTVMNVALP 678


>gi|315172457|gb|EFU16474.1| PAS domain S-box [Enterococcus faecalis TX1346]
          Length = 591

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILSSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|294781584|ref|ZP_06746920.1| sensor histidine kinase/response regulator [Enterococcus faecalis
           PC1.1]
 gi|294451280|gb|EFG19746.1| sensor histidine kinase/response regulator [Enterococcus faecalis
           PC1.1]
          Length = 590

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|293382857|ref|ZP_06628775.1| sensory box histidine kinase [Enterococcus faecalis R712]
 gi|293389656|ref|ZP_06634111.1| sensory box histidine kinase [Enterococcus faecalis S613]
 gi|307269515|ref|ZP_07550854.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|307273087|ref|ZP_07554333.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|312901892|ref|ZP_07761157.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|312907672|ref|ZP_07766663.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|312910289|ref|ZP_07769136.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|291079522|gb|EFE16886.1| sensory box histidine kinase [Enterococcus faecalis R712]
 gi|291081049|gb|EFE18012.1| sensory box histidine kinase [Enterococcus faecalis S613]
 gi|306510072|gb|EFM79096.1| PAS domain S-box [Enterococcus faecalis TX0855]
 gi|306514135|gb|EFM82711.1| PAS domain S-box [Enterococcus faecalis TX4248]
 gi|310626700|gb|EFQ09983.1| PAS domain S-box [Enterococcus faecalis DAPTO 512]
 gi|311289562|gb|EFQ68118.1| PAS domain S-box [Enterococcus faecalis DAPTO 516]
 gi|311291085|gb|EFQ69641.1| PAS domain S-box [Enterococcus faecalis TX0470]
 gi|315037116|gb|EFT49048.1| PAS domain S-box [Enterococcus faecalis TX0027]
 gi|315144943|gb|EFT88959.1| PAS domain S-box [Enterococcus faecalis TX2141]
 gi|315162379|gb|EFU06396.1| PAS domain S-box [Enterococcus faecalis TX0645]
 gi|315168898|gb|EFU12915.1| PAS domain S-box [Enterococcus faecalis TX1341]
 gi|315576087|gb|EFU88278.1| PAS domain S-box [Enterococcus faecalis TX0309B]
 gi|315580661|gb|EFU92852.1| PAS domain S-box [Enterococcus faecalis TX0309A]
          Length = 591

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|257086990|ref|ZP_05581351.1| hypothetical protein EFLG_00581 [Enterococcus faecalis D6]
 gi|256995020|gb|EEU82322.1| hypothetical protein EFLG_00581 [Enterococcus faecalis D6]
 gi|315027860|gb|EFT39792.1| PAS domain S-box [Enterococcus faecalis TX2137]
          Length = 591

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|257085051|ref|ZP_05579412.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
 gi|256993081|gb|EEU80383.1| sensory box histidine kinase [Enterococcus faecalis Fly1]
          Length = 584

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 357 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 416

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 417 QEILELSRGSATIPYAEQEITLEKFITEILSSYQQQLAAKQLKTVVHGLPESQFFTKYEL 476

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 477 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 535

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 536 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 581


>gi|256961794|ref|ZP_05565965.1| hypothetical protein EFGG_00872 [Enterococcus faecalis Merz96]
 gi|256964991|ref|ZP_05569162.1| hypothetical protein EFHG_00287 [Enterococcus faecalis HIP11704]
 gi|257079145|ref|ZP_05573506.1| hypothetical protein EFIG_00410 [Enterococcus faecalis JH1]
 gi|256952290|gb|EEU68922.1| hypothetical protein EFGG_00872 [Enterococcus faecalis Merz96]
 gi|256955487|gb|EEU72119.1| hypothetical protein EFHG_00287 [Enterococcus faecalis HIP11704]
 gi|256987175|gb|EEU74477.1| hypothetical protein EFIG_00410 [Enterococcus faecalis JH1]
          Length = 576

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 346 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 405

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 406 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 465

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 466 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 524

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 525 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 570


>gi|256959113|ref|ZP_05563284.1| hypothetical protein EFEG_00565 [Enterococcus faecalis DS5]
 gi|256949609|gb|EEU66241.1| hypothetical protein EFEG_00565 [Enterococcus faecalis DS5]
          Length = 583

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 357 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 416

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 417 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 476

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 477 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 535

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 536 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 581


>gi|256853259|ref|ZP_05558629.1| sensory box histidine kinase [Enterococcus faecalis T8]
 gi|256711718|gb|EEU26756.1| sensory box histidine kinase [Enterococcus faecalis T8]
          Length = 587

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|256762633|ref|ZP_05503213.1| sensor histidine kinase [Enterococcus faecalis T3]
 gi|256683884|gb|EEU23579.1| sensor histidine kinase [Enterococcus faecalis T3]
          Length = 506

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 276 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 335

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 336 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 395

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 396 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 454

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 455 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 500


>gi|229545684|ref|ZP_04434409.1| sensor histidine kinase [Enterococcus faecalis TX1322]
 gi|257422479|ref|ZP_05599469.1| two component system sensor histidine kinase [Enterococcus faecalis
           X98]
 gi|300860668|ref|ZP_07106755.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|307275836|ref|ZP_07556975.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|307291859|ref|ZP_07571730.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|229309134|gb|EEN75121.1| sensor histidine kinase [Enterococcus faecalis TX1322]
 gi|257164303|gb|EEU94263.1| two component system sensor histidine kinase [Enterococcus faecalis
           X98]
 gi|300849707|gb|EFK77457.1| PAS domain S-box protein [Enterococcus faecalis TUSoD Ef11]
 gi|306497125|gb|EFM66671.1| PAS domain S-box [Enterococcus faecalis TX0411]
 gi|306507528|gb|EFM76659.1| PAS domain S-box [Enterococcus faecalis TX2134]
 gi|315029564|gb|EFT41496.1| PAS domain S-box [Enterococcus faecalis TX4000]
 gi|315032036|gb|EFT43968.1| PAS domain S-box [Enterococcus faecalis TX0017]
 gi|315156146|gb|EFU00163.1| PAS domain S-box [Enterococcus faecalis TX0043]
          Length = 591

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|229149756|ref|ZP_04277986.1| hypothetical protein bcere0011_13140 [Bacillus cereus m1550]
 gi|228633787|gb|EEK90386.1| hypothetical protein bcere0011_13140 [Bacillus cereus m1550]
          Length = 429

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 192 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 251

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 252 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLVSEVSLHNISIDYNFSNELDDILVN 311

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 312 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 370

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      +     +  + 
Sbjct: 371 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSASN-GTTFTISIP 415


>gi|218233711|ref|YP_002366239.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218161668|gb|ACK61660.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 423

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L D  Q +         + + +            
Sbjct: 246 NNIITKFLAISKTREFTREPFPINTFLRDYIQQLLVSEVSLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      +     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSASN-GTTFTISIP 409


>gi|220915651|ref|YP_002490955.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953505|gb|ACL63889.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 414

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 60/205 (29%), Gaps = 9/205 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRL-KFMRLA 70
           + + + H+I +P+G I  + EL+           + E +  +             F+ LA
Sbjct: 207 MAAMVAHEIRNPLGVIRGAAELVRARSGAALAPRDQEALADVLGEVERLRRLTEDFLDLA 266

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS- 129
                + +         +           V+V+ +   + +  + A++   L  +   + 
Sbjct: 267 RDPAIAAEPADLAELAAEAARALGRAHPSVEVALSVPPLRVRADAARVRQVLANLLENAA 326

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
           L    +V ++   +       ++ +G          ++ +           +       +
Sbjct: 327 LAGARRVAVTAGPAGPMARLEVRDDGPGVDAA-VRARLFEPFASGRARGAGLGLAISRRI 385

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
           A  +   L            +  L 
Sbjct: 386 AERHGGALELADPGPPGAAFALTLP 410


>gi|119898703|ref|YP_933916.1| two-component system sensor protein [Azoarcus sp. BH72]
 gi|119671116|emb|CAL95029.1| probable two-component system sensor protein [Azoarcus sp. BH72]
          Length = 915

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 64/248 (25%), Gaps = 35/248 (14%)

Query: 2   AKNICFNLSSMDLVAL-------------LCSRICHDIISPIGAIHNSLELLDEV----- 43
            K+    +++ +L A                S + H++ +P+ +I    E+L E      
Sbjct: 660 EKSHALEVATEELRAANEQLKEFDRLKDDFMSSVTHELRTPLTSIRALSEMLYEDPRIGL 719

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFI 94
                 + +I   +      +  +            +  +      + L   +   + F 
Sbjct: 720 EDRTRFLGIIVSEAERLTRLVNQVLDLAKIESGHAEWHNSDVDMRELALHAADTTAQLFR 779

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFS 150
                + +        L  +R ++L  L  +   +          V+       +     
Sbjct: 780 ERGAALVLDLPERVPLLRADRDRLLQVLLNLLSNAAKFVPPAGGEVRLVLRPENSGLRAD 839

Query: 151 LKINGNLARFPE---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +  NG      +    F +   G           +       +      RL  E      
Sbjct: 840 VIDNGPGIPPEQQQVIFEKFRQGGDARARPPGTGLGLPISRQIIEHFGGRLWVESGPGEG 899

Query: 207 VVLSALLE 214
              S +L 
Sbjct: 900 SRFSFVLP 907


>gi|172060290|ref|YP_001807942.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171992807|gb|ACB63726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 989

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 56/238 (23%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRL 55
           + + +     + +  +       + I H++ +P+  I    ++L     ++   +  + +
Sbjct: 522 LEETVRVAKDAAEAASRAKDQFLANISHELRTPLNGILGYAQILQRDVRLDTRQLASVGV 581

Query: 56  SSMSAIIRLKFMRLAFGYTGS----------------VDSLIGLGDIEQVIEDFIAVDKR 99
              S    L  +     +                       I      +  +  + ++  
Sbjct: 582 IEQSGQHLLTLINDILDFARLGAGKLELQVGEVPLRGFLETIAEIVAVRAQQKRLVLNYV 641

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                        R   ++LLNL   A     RG       + +     F ++  G    
Sbjct: 642 AAPDLPAVVRVDERRLRQVLLNLLANAVQFTDRGEVTLSVSRGAAGRLRFEVRDTGIGVS 701

Query: 160 FPEKFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                         G+         +       L       +          V    L
Sbjct: 702 ADRLEAIFQPFEQAGDHTRRSGGAGLGLAISQQLVRMMGGEIEVTSSAGEGSVFGFEL 759


>gi|94265844|ref|ZP_01289575.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93453619|gb|EAT04012.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 696

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 34/243 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54
               + S  +  L  L   + H+I +P+  I    +LL +    DE +        +  +
Sbjct: 437 QEKLIHSQKMEDLGRLAGGVAHEINTPLSIILGYAQLLLQDIPPDEPVAQDVAIIEKQTQ 496

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110
                    L F R        +D    + ++  ++E     ++   +            
Sbjct: 497 ACRKIVADLLSFSRGTDQAREKMDINESIREVTSLVEHIFRQNRITILQRLDDQIPPIHG 556

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQIV 168
                 ++ +NL   A  ++   G + I       +   + S+   G+     +   +I 
Sbjct: 557 NRERLRQVWMNLLNNAADAIGSDGSIQIKTKLCAHRRRLVVSVADTGSGITEHDL-DKIF 615

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLP---------------EIIDDHNVVLSA 211
           +    +        +       +  ++  R+                 E       V   
Sbjct: 616 EPFFTTKPADKGTGLGLSLTFGIIKDHGGRISALSPVPSEYMEFPAEFEHSAGPGTVFFV 675

Query: 212 LLE 214
            L 
Sbjct: 676 ELP 678


>gi|21231797|ref|NP_637714.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768077|ref|YP_242839.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113508|gb|AAM41638.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573409|gb|AAY48819.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1364

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKIKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LE+
Sbjct: 866 FVITLER 872


>gi|15893728|ref|NP_347077.1| sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|15023292|gb|AAK78417.1|AE007558_7 Sensory transduction histidine kinase [Clostridium acetobutylicum
           ATCC 824]
 gi|325507851|gb|ADZ19487.1| Sensory transduction histidine kinase [Clostridium acetobutylicum
           EA 2018]
          Length = 637

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 60/226 (26%), Gaps = 27/226 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMR 68
                 I H++ +P+  I ++L+++D                +   +   +    LK + 
Sbjct: 379 TQFMGTISHELRTPLNIILSALQVMDLYANYGDLEEKCRVYEKYSVVMKQNGYRLLKMIN 438

Query: 69  LAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                T   D              I       V        K +      E+  +  ++ 
Sbjct: 439 NFMDITQIEDGARKLNFVQGNIVTIVEDVTLAVAAFLKDKGKNIIFDTDVEEKIMIFDKE 498

Query: 117 KILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-- 171
           KI   +      A     +   + +++ D  +    S++ NG      +K          
Sbjct: 499 KIERIVLNLLSNAVKFTGKDANIRVAIHDVGSNIQISVEDNGMGIPEDKKKMIFERFFQL 558

Query: 172 ---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +   I    V LL   +   +  +         +  L 
Sbjct: 559 DKTFTRKNEGSGIGLSIVKLLVELHDGTIEVKSKVGIGSEFTVKLP 604


>gi|77362188|ref|YP_341762.1| signal transduction histidine kinase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76877099|emb|CAI89316.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 927

 Score =  111 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/236 (7%), Positives = 55/236 (23%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLI 53
           + K +     +    +L  + + H+I +P+  I    +LL        +   E +++Q  
Sbjct: 550 LIKAVGVANKANKTKSLFLANMSHEIRTPLNGILGMTQLLIKNSKIAADEQNELQMIQQS 609

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------RVQVS 103
             + +  +  +            +D               +  +            +   
Sbjct: 610 AHNLLLILNEILDFSKIEANALKLDVQPTEIKKLIRQLATVFDNSGLSANVTFKLTIAPE 669

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S   ++++ N+   A      G        +  +     +   G      ++
Sbjct: 670 LPPFIALDSLRFSQVINNILSNAGKFTDTGLITMDCFVE-DDCLFIKITDTGIGISALQQ 728

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++                +       L       L     +         + 
Sbjct: 729 QNLFIEFTQADVSTTRKYGGTGLGLTISKRLIELMGGSLTLRSEEGVGSCFKIKIP 784


>gi|332971703|gb|EGK10651.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 343

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSM 58
           + K    ++ S +    L S I HDI +P+ +I   ++ L +     E+E  + I + S 
Sbjct: 104 LEKIQVQSIKSQEARRRLLSSISHDIRTPLTSIIGYVDALKDDIASSEEEKREYIGIISK 163

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +    + +   F                          L +    I+      K +   
Sbjct: 164 KSNGLKQLIDEIFTMAKLDADEIPLKIESLDFAEIVRESLIEFLPEIKKHDLELKVIIPE 223

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +I+ N+   A     RG  + I + +  +E    +   G      + 
Sbjct: 224 EKYMITADRLSLMRIIGNIVKNAIHYGKRGKTLGIELTEKADEYQLLIWDQGPGISQVDI 283

Query: 164 ---FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++   +           +       L  +N  R+  E I          + K
Sbjct: 284 GNVFERMHRSDGARNLSHGGSGLGLAIAKALVEKNNGRIWVESIPWEKTTFGFSIPK 340


>gi|313123614|ref|YP_004033873.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280177|gb|ADQ60896.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 552

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 63/216 (29%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     E   +    ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENHLVKEEDRDSFYKKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   I L     V E   A+                    +   R   +I  NL  
Sbjct: 387 DENQRFEEIKLNLKSPVTEALEALQSSADRHGIKLETNLSDTMILANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            +       GK  I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NSIRYNKEKGKTKITVKEHRGQAILQVADTGIGI-PQEAQNRIFERFYRVDKSHSRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E       + + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSIFTVIFP 541


>gi|302552563|ref|ZP_07304905.1| two-component system sensor kinase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302470181|gb|EFL33274.1| two-component system sensor kinase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 534

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 63/226 (27%), Gaps = 20/226 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAII 62
              S   V    +   H++ +P+ +I    EL               +  I   +    +
Sbjct: 280 RQQSETRVRQFVADASHELRTPLASIRGYAELTRRGREKVGPDTRHALGRIESEAGRMTL 339

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--------- 113
            ++ + L               D+  ++ D I+  +                        
Sbjct: 340 LVEDLLLLARLDAGRPLQFEQTDLVPLVVDTISDARAAGQDHNWRLDLPDEPALVSADAA 399

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDG 170
              ++L+NL   A    P G  VT  VQ         ++ NG        P  F +   G
Sbjct: 400 RLQQVLVNLLGNARNHTPPGTTVTARVQRRGTWLCVDVEDNGQGIPAELLPHVFERFARG 459

Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        S  +    V  +A  +   +  + +     V +  L 
Sbjct: 460 DSARSRATGSTGLGLAIVQAVATAHGGAVTVDSVPGR-TVFTVHLP 504


>gi|297516444|ref|ZP_06934830.1| phosphate regulon sensor protein [Escherichia coli OP50]
          Length = 345

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 69/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 123 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 182

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 183 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 242

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+      +   FS++ NG     PE   ++ +                
Sbjct: 243 AVNHTPEGTHITVRWLRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 301

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 302 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 336


>gi|297539091|ref|YP_003674860.1| integral membrane sensor signal transduction histidine kinase
           [Methylotenera sp. 301]
 gi|297258438|gb|ADI30283.1| integral membrane sensor signal transduction histidine kinase
           [Methylotenera sp. 301]
          Length = 562

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 76/227 (33%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
           + ++      +  L     + + + H++ +P+G + +S + LL E  I +E  ++     
Sbjct: 332 LERSKENLTRAAKLAVVGEMAAAMSHEVRTPLGILRSSAQVLLREPNISEEGHEVCGFII 391

Query: 58  MSAIIRLKFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                  K +             F +T   +       + ++  +   ++   + +    
Sbjct: 392 SETERLNKLVSALIDSARPRLPDFKHTDLAELAQQCVAMLRMQAENKKIELICEANEKAI 451

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +    +  ++LLNL + A   L   GK+ + V  S ++ + ++  NG      E   Q+
Sbjct: 452 ALCDVEQITQVLLNLLLNAIQVLQDNGKIILKVTSSIDQVLITVSDNGPGIPV-EHRNQV 510

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +    V  +   N   +     +         L 
Sbjct: 511 FEPFFSKRRGGIGLGLAIVKQIVMANHGNISVHQSNLGGAEFRLQLP 557


>gi|291285507|ref|YP_003502325.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli
           O55:H7 str. CB9615]
 gi|290765379|gb|ADD59340.1| Integral membrane sensor hybrid histidine kinase [Escherichia coli
           O55:H7 str. CB9615]
          Length = 785

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q    ++     
Sbjct: 418 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 477

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 478 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 537

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+        +
Sbjct: 538 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 596

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 597 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 648


>gi|257885995|ref|ZP_05665648.1| sensor histidine kinase [Enterococcus faecium 1,231,501]
 gi|257821851|gb|EEV48981.1| sensor histidine kinase [Enterococcus faecium 1,231,501]
          Length = 464

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 67/218 (30%), Gaps = 17/218 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   L + I H++ +P+  +  ++E + +    I  E +Q            +  + +  
Sbjct: 245 LRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNIEVIN 304

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLN 121
                 D L         + + +  +   ++      +++  +            ++++N
Sbjct: 305 KIEAKYDHLNKTEFNIYKLIESVIENFASKIESKNLHVEIQGDNINISADKDKMNQVVIN 364

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTI 176
           L   A     + G +  S+  +K+  +  ++ NG           F +      +    +
Sbjct: 365 LLNNAIKFTQKEGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSRSRAL 424

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    V  +   +K  +  +            L 
Sbjct: 425 GGQGIGLAIVKSVVEAHKGSITVKSKLGLGTKFVIKLP 462


>gi|228951780|ref|ZP_04113879.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228807902|gb|EEM54422.1| hypothetical protein bthur0006_11950 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 468

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   E   D    +   L
Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|197120953|ref|YP_002132904.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
 gi|196170802|gb|ACG71775.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. K]
          Length = 414

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/205 (10%), Positives = 60/205 (29%), Gaps = 9/205 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRL-KFMRLA 70
           + + + H+I +P+G I  + EL+           + E +  +             F+ LA
Sbjct: 207 MAAMVAHEIRNPLGVIRGAAELVRARSGAALAPRDQEALADVLGEVERLRRLTEDFLDLA 266

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS- 129
                + +         +           V+V+ +   + +  + A++   L  +   + 
Sbjct: 267 RDPAIAAEPADLAELAAEAARALGRAHPSVEVALSVPPLRVRADAARVRQVLANLLENAA 326

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
           L    +V ++   +       ++ +G          ++ +           +       +
Sbjct: 327 LAGARRVAVTGGPAGPMARLEVRDDGPGVDAA-VRARLFEPFASGRARGAGLGLAISRRI 385

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
           A  +   L            +  L 
Sbjct: 386 AERHGGALELADPGPPGAAFALTLP 410


>gi|194367205|ref|YP_002029815.1| response regulator receiver sensor hybrid histidine kinase
           [Stenotrophomonas maltophilia R551-3]
 gi|194350009|gb|ACF53132.1| response regulator receiver sensor hybrid histidine kinase
           [Stenotrophomonas maltophilia R551-3]
          Length = 503

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 66/227 (29%), Gaps = 16/227 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59
           +        ++ ++LL + + HD+ + +  +    +LL    +      +  +I      
Sbjct: 140 ETELMRAQRLESLSLLAAGLSHDLRNILQPLLIMPDLLKARTDDPQLHHLADVIAECGRR 199

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------S 112
                + M      +      I +  +   +   +  +    V    +  D         
Sbjct: 200 GHEMAESMLSFVRGSRKPSERIEIDGLFDAVALLLRSNVPDAVRLELQVQDQGLVVDANY 259

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQI 167
            E  +++LNL + A  ++P GG+++++   +            +   G      +  + +
Sbjct: 260 TELQQVMLNLALNAIQAMPNGGRLSLTASHAGQRDGVDWMQIRVVDEGIGM-DADTLSHL 318

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  D   +       +       +               L 
Sbjct: 319 FNPFFTTKADGTGLGLISCKRIVEGAGGSIHVSSQPGQGTCFELRLP 365


>gi|118479215|ref|YP_896366.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam]
 gi|196045893|ref|ZP_03113122.1| sporulation kinase B [Bacillus cereus 03BB108]
 gi|225865992|ref|YP_002751370.1| sporulation kinase B [Bacillus cereus 03BB102]
 gi|229186251|ref|ZP_04313418.1| hypothetical protein bcere0004_37960 [Bacillus cereus BGSC 6E1]
 gi|118418440|gb|ABK86859.1| sporulation kinase B [Bacillus thuringiensis str. Al Hakam]
 gi|196023333|gb|EDX62011.1| sporulation kinase B [Bacillus cereus 03BB108]
 gi|225787116|gb|ACO27333.1| sporulation kinase B [Bacillus cereus 03BB102]
 gi|228597201|gb|EEK54854.1| hypothetical protein bcere0004_37960 [Bacillus cereus BGSC 6E1]
          Length = 424

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|148654298|ref|YP_001274503.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148566408|gb|ABQ88553.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 382

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 22/227 (9%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK 65
                 L   L + + H++ +P+  I   +E L +     +++   LIR  +       +
Sbjct: 143 RTEQRRLA--LIADVAHELRTPLTTIEGYMEGLLDGVIAPDEQTFTLIRHEAARLRRLTE 200

Query: 66  FM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +           R+          L  L    Q       V+ R+ +S     +    +
Sbjct: 201 ELGLLSRAEAGELRVQPRLFDLCTMLQELIARFQPQFAACEVELRLYLSVQSLTVYADPD 260

Query: 115 R-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
           R  ++++NL   A    P GG V +S+         S++  G           F +    
Sbjct: 261 RLMQVMVNLLSNALRYTPAGGLVEVSLTPLGEYVRISVRDTGIGIEAEHLPLIFERFYRV 320

Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
           +           I       L + +   +  E             L 
Sbjct: 321 DKSRTRNSGGTGIGLTIARHLVYASGGEIWAESDGAGKGSTFHVTLP 367


>gi|42783105|ref|NP_980352.1| sporulation kinase B [Bacillus cereus ATCC 10987]
 gi|42739033|gb|AAS42960.1| sporulation kinase B [Bacillus cereus ATCC 10987]
          Length = 424

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|83311066|ref|YP_421330.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945907|dbj|BAE50771.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 566

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 72/244 (29%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQ 51
           + +     + S  + +L  L + I H+I +P+        +I N L  +           
Sbjct: 318 LRETQVHLIQSEKMASLGQLVAGIAHEINNPLSFALSNVFSIENWLAAVMTEAAPCLSED 377

Query: 52  LIRLSSMSAII-----------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
            +     +                       F RL  G   +VD    +  +   +   +
Sbjct: 378 HLVKLDKARKRIADTGQGLERVRELVVKLRTFSRLDEGEFKTVDIKEAVESVLLFLRHKM 437

Query: 95  AVDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
           +    V+ ++         + +  ++++N+   A  ++   G +T+           ++ 
Sbjct: 438 SDRIEVRRNFAEDNMLACYAGQLNQVIMNVVANAVDAIEGKGVITVRTFRQDGMFAIAVS 497

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+    PE   +I D    +        +       +   +  R+           + 
Sbjct: 498 DTGSGI-PPEIQERIFDPFFTTKPVGQGTGLGLSISYGIIKSHDGRIEVSSHPGQGTEIR 556

Query: 211 ALLE 214
            L+ 
Sbjct: 557 ILIP 560


>gi|37523003|ref|NP_926380.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35214006|dbj|BAC91375.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 640

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 75/238 (31%), Gaps = 31/238 (13%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAII-- 62
                ++ +  L   I HD+ + +  I  + +LL      ++ + ++L+R+   ++    
Sbjct: 264 LRAQRLESLGTLAGGIAHDLNNILTPIVAAAQLLPLRLTDLDQQDLRLLRMLEENSRRGS 323

Query: 63  -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
                 L F R   G    +     LG++ Q++         +++  + + +   +    
Sbjct: 324 HLVTQILSFARGMEGRRTILQIRHLLGEVGQIVRQTFPKSIEIRIDASAQDLWTIQADAT 383

Query: 114 ERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLA 158
           +  ++ +NL + A  ++P                     I    +    + ++   G   
Sbjct: 384 QMHQVFMNLCVNARDAMPAGGVLTLTARNLIVDEHYARLIPDAAAGAYVVVTVSDTGTGI 443

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE   +I +    +        +    V+ +   +   +               L 
Sbjct: 444 -TPEIVEKIFEPFFTTKELGKGTGLGLSTVLGIVKHHGGFVGVYSEPGRGTEFRVHLP 500


>gi|47565887|ref|ZP_00236926.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein protein [Bacillus cereus G9241]
 gi|228987195|ref|ZP_04147316.1| hypothetical protein bthur0001_38670 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229157589|ref|ZP_04285665.1| hypothetical protein bcere0010_37700 [Bacillus cereus ATCC 4342]
 gi|47557167|gb|EAL15496.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein protein [Bacillus cereus G9241]
 gi|228625867|gb|EEK82618.1| hypothetical protein bcere0010_37700 [Bacillus cereus ATCC 4342]
 gi|228772424|gb|EEM20869.1| hypothetical protein bthur0001_38670 [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 424

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
 gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
           griseoaurantiacus M045]
          Length = 1389

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 31/239 (12%)

Query: 5   ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLI 53
                 + +L  L        S I H++ +P+  I   +E L              + +I
Sbjct: 338 QAQQRRAEELAELDRAKTTFFSNISHELRTPLTLIMGPVEELRTRLSGAGEEVHAELDVI 397

Query: 54  RLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101
             + +     +  +                 V+      ++  V    +           
Sbjct: 398 HRNGLRLGKLVNTLLDFSRLEAGRMQARYEPVELAAVTAELASVFRSAVERAGLTLDVDC 457

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +             K++LNL   A       G V + V+ S  + +  +   G      
Sbjct: 458 PALDEPVYVDRAMWEKVVLNLLSNALKFT-FEGAVRVRVRRSGPDAVVVVADTGTGVPEA 516

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ +           + +   I    V  L   +   +  E  +      +  + 
Sbjct: 517 E-MPRLFERFHRIENARARSHEGSGIGLALVRELVGLHGGTIDAESTEGVGTTFTLRIP 574


>gi|322805362|emb|CBZ02926.1| two component system histidine kinase [Clostridium botulinum H04402
           065]
          Length = 451

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + +++      +     L   L S I H+I +P+  + N+LE + +    + +E +  + 
Sbjct: 213 LRESVNILAEKLKYQDSLRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272

Query: 55  LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101
              +     L  + +            F      + +  +            I +   ++
Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQKIFLDELIADICSDFYAIAENKNIKLQYHIE 332

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A      GG+V I +  S    +  +K NG   +  
Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392

Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F ++  G+        + I    V  +   +   +  E  +           +
Sbjct: 393 DLPFIFERLYRGDKSRHQFKGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKVYFHR 450


>gi|315125214|ref|YP_004067217.1| sensor protein [Pseudoalteromonas sp. SM9913]
 gi|315013727|gb|ADT67065.1| sensor protein [Pseudoalteromonas sp. SM9913]
          Length = 896

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 61/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  + +   + + H+I +PI  I     L  +     +    I  +  + 
Sbjct: 513 LRQEKQKADEASAIKSQFLANMSHEIRTPINGIKGMHYLALQQQDWQQAKGYIEQADGAL 572

Query: 61  IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+ +                             +  + Q   +  ++  +++     
Sbjct: 573 SVLLRVLNDVLDFSKMEAGKLELMQEPVNLKQLAEDIVGLMQFEVESKSLSLKLEYDSDA 632

Query: 107 EK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +ILLNL   A     + G +T+ +  S     FS+   G       + 
Sbjct: 633 HLILNTDPIRLKQILLNLLNNAVKFTAK-GCITLKIWQSSKMTYFSVNDTGIGISSAAQK 691

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +              +       L       +  +  + H    +  L 
Sbjct: 692 QLFKPFSQADSSTSRQYGGTGLGLSICKKLVELMGGAIDLKSSEGHGSTFTFSLP 746


>gi|301162296|emb|CBW21841.1| putative two-component sensor histidine kinase [Bacteroides
           fragilis 638R]
          Length = 792

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/229 (7%), Positives = 58/229 (25%), Gaps = 21/229 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSM 58
                  +L     + + H+I +P+ AI     +L        +   +  ++++I  ++ 
Sbjct: 552 KQMAEKAELKQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNE 611

Query: 59  SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             +  +  +                 +  +          + +I   +     +  +   
Sbjct: 612 LLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIRSSLQFRLELDDTVPV 671

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                    A+++ N    A+         +   V     E    ++ +G      E   
Sbjct: 672 PVHTDRLRFAQVISNFLNNANKFTQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMM 731

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      +    +      ++      R+            + +L
Sbjct: 732 IFERFYKTDEFEQGSGLGLAISKVIIERLSGRIKVHSEKGKGSCFTVIL 780


>gi|260574718|ref|ZP_05842721.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sp. SW2]
 gi|259023135|gb|EEW26428.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sp. SW2]
          Length = 346

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 57/226 (25%), Gaps = 29/226 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ A+   +E L     D+ G  +  + ++   +      ++ +     
Sbjct: 119 FVANVSHELRTPLTALVGFIETLQGAARDDAGARERFLTIMAREAGRMNRLVQDLLQLSR 178

Query: 73  YTGSVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                                      Q+ +      +   +         + +  ++L 
Sbjct: 179 VESEERLRPTEMLDIVALIRGVKATLRQLADATAVTVQMTGIEAPVLLAADADQITQVLH 238

Query: 121 NLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD- 169
           NL   A                +             ++   G             +    
Sbjct: 239 NLIENAVKYGGPGKTVTIETSLIARDPVLRGPGVRITVTDQGEGIDPVHLPRLTERFYRV 298

Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +    +    V  + + ++ RLL +         S +L 
Sbjct: 299 DSHRSREMGGTGLGLAIVKHIVNRHRGRLLIDSEKGKGSRFSVILP 344


>gi|254883253|ref|ZP_05255963.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|319642628|ref|ZP_07997274.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
 gi|254836046|gb|EET16355.1| two-component system sensor histidine kinase [Bacteroides sp.
           4_3_47FAA]
 gi|317385716|gb|EFV66649.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_40A]
          Length = 554

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 59/233 (25%), Gaps = 24/233 (10%)

Query: 4   NICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
            +     + +L      A L   + H+I +P+ AI     LL           +++I+ +
Sbjct: 179 ELEEARRNAELAGEQKTAFLA-NMSHEIRTPLNAIVGFAGLLGTASDQDRISYVEIIKGN 237

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   +  +             +   +        +  L  I ++  +   V  R+     
Sbjct: 238 TNMLLQLVNDILDMSKIEAGTLEFIYTDVDVNQIMRELEGIFRLRLEEADVPVRIIFEPK 297

Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                        ++++ N    A     +G          +N   F +   G      +
Sbjct: 298 LPVCFIHTEKNRISQVISNFLSNAFKYTVQGSITMGYEIR-ENGICFYVSDTGTGIPEDK 356

Query: 163 KFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      ++      +       +  +    +              +L 
Sbjct: 357 VSQVFERFTKLDAKRQGTGLGLSISRTIIKKMGGEIGVTSKYGEGSTFWFVLP 409


>gi|253563388|ref|ZP_04840845.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
 gi|251947164|gb|EES87446.1| two-component system histidine kinase [Bacteroides sp. 3_2_5]
          Length = 792

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/229 (7%), Positives = 58/229 (25%), Gaps = 21/229 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSM 58
                  +L     + + H+I +P+ AI     +L        +   +  ++++I  ++ 
Sbjct: 552 KQMAEKAELKQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNE 611

Query: 59  SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             +  +  +                 +  +          + +I   +     +  +   
Sbjct: 612 LLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIRSSLQFRLELDDTVPV 671

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                    A+++ N    A+         +   V     E    ++ +G      E   
Sbjct: 672 PVHTDRLRFAQVISNFLNNANKFTQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMM 731

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      +    +      ++      R+            + +L
Sbjct: 732 IFERFYKTDEFEQGSGLGLAISKVIIERLSGRIKVHSEKGKGSCFTVIL 780


>gi|188991208|ref|YP_001903218.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris
           str. B100]
 gi|167732968|emb|CAP51164.1| Two-component system sensor histidine kinase-response regulator
           hybridprotein [Xanthomonas campestris pv. campestris]
          Length = 1364

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 627 EKQLRLAMDAARSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVTKID 686

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I  ++   ++      +    
Sbjct: 687 RSARSLLEIINDILDFSKIEAGRIDLERAPFDLNQLFDNIADLMRSSLSAKPVEMIVEPL 746

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 747 PRECRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKIKLLFSVRDTGI 806

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 807 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGALEVESVPGRGSEFY 865

Query: 209 LSALLEK 215
               LE+
Sbjct: 866 FVITLER 872


>gi|154251104|ref|YP_001411928.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154155054|gb|ABS62271.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 661

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 77/241 (31%), Gaps = 30/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIR 54
           A+      S     +   + + H++ +P+ AI    E+L              E  QLI 
Sbjct: 400 ARERAETASRTK--SRFLANMSHELRTPLNAIIGFSEILRMQMFGALGHPRYTEYAQLIN 457

Query: 55  LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQV------IEDFIAVDKRV 100
            S    +  +  +             +  +VD+   +    ++            V K  
Sbjct: 458 ESGALLLDLISDILDMSKIEAGKYELHPETVDAAALIESCVRLVRGRAEENGIHLVKKIQ 517

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                G  +   R   +I+LNL   +    P GG++++++ +++    F++   G     
Sbjct: 518 CAELGGTLVADERALKQIMLNLLSNSAKFTPAGGRISVALTETEETICFAVADTGRGIPA 577

Query: 161 PEKFTQIVDGNVESTI------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++     +         +   +    V  LA  +   +  +        ++  L 
Sbjct: 578 DQI-ARLGQPFEQIATDAALSKEGTGLGLALVRSLAELHGGSMAIDSELGVGTTVTVTLP 636

Query: 215 K 215
           K
Sbjct: 637 K 637


>gi|94264440|ref|ZP_01288229.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455130|gb|EAT05352.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 505

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 64/240 (26%), Gaps = 26/240 (10%)

Query: 2   AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            KN      S DL             I HD+  P+  I++ ++LL+    +    +   +
Sbjct: 256 RKNRQLEEKSADLARSNAELEQFAYVISHDLRQPLRMINSYMKLLERALDDKLDDETREM 315

Query: 56  SS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                         L  +          + ++ L   + + E    +  +++ +    ++
Sbjct: 316 MGFAAGGAQRMDQMLVSLLEYSRVGRKGEPMVPLASRQALDEALDFLAPKIKETGATVRL 375

Query: 110 DLSR--------ERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLAR 159
                       E  ++  NL   A           + +          F++  NG    
Sbjct: 376 SGDWPEIAASRDEFTRLWQNLIGNALKYRDPDRVCEVEISVTPEDEGWRFTVADNGIGID 435

Query: 160 F--PEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
               ++  ++          +   I       +   +  R+  E             L K
Sbjct: 436 PKQFDRLFKVFQRLHTRDKYEGSGIGLAVARKIVERHGGRIWVESQGAGQGCRFIFTLPK 495


>gi|29348380|ref|NP_811883.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides thetaiotaomicron VPI-5482]
 gi|253569248|ref|ZP_04846658.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
 gi|29340284|gb|AAO78077.1| two-component system sensor histidine kinase/response regulator,
            hybrid (one-component system) [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251841267|gb|EES69348.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 1_1_6]
          Length = 1346

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 21   RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78
             I H+  +P+  I   +E+L ++ +   V   I+    +A      +     +       
Sbjct: 827  NISHEFRTPLTLILGQIEVLMQMDLGTTVYNRIQRIYKNAWHMRNLISELLDFRKQEQGY 886

Query: 79   ----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---V 125
                                  E     +   +     E I +  +  ++   +F     
Sbjct: 887  LKLRVEEQNLVTFTRQIYMCFYEYAQKKEITYRFDSVEETISVWFDPIQLQKVIFNLLSN 946

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-------S 178
            A       G +T+ V+   ++ + S+   G                              
Sbjct: 947  AFKYTSNKGNITVEVRKVASQAVVSVCDTGIGIPVEHISKIFDRFYQTDNASSSSSFTLG 1006

Query: 179  HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       + + +  ++  E            L 
Sbjct: 1007 TGIGLALAKGIMNMHHGKIEVESTVGEGTKFILSLP 1042


>gi|53712586|ref|YP_098578.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
 gi|52215451|dbj|BAD48044.1| two-component system histidine kinase [Bacteroides fragilis YCH46]
          Length = 792

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/229 (7%), Positives = 58/229 (25%), Gaps = 21/229 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSM 58
                  +L     + + H+I +P+ AI     +L        +   +  ++++I  ++ 
Sbjct: 552 KQMAEKAELKQSFLNNMSHEIRTPLNAIVGFTNVLLGEGSEEIDPDEKASMLEIINHNNE 611

Query: 59  SAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             +  +  +                 +  +          + +I   +     +  +   
Sbjct: 612 LLLKLINDVLEISRLDSGSLDFDMKEWNMTDIVKEIYKTYQPLIRSSLQFRLELDDTVPV 671

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                    A+++ N    A+         +   V     E    ++ +G      E   
Sbjct: 672 PVHTDRLRFAQVISNFLNNANKFTQNGYIALGCKVDKKHREVRIYVEDSGKGIDEKELMM 731

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      +    +      ++      R+            + +L
Sbjct: 732 IFERFYKTDEFEQGSGLGLAISKVIIERLSGRIKVHSEKGKGSCFTVIL 780


>gi|332360673|gb|EGJ38482.1| sensor histidine kinase [Streptococcus sanguinis SK49]
          Length = 344

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +       S     ++ +++ HDI +PI +I  ++E + +       +   +  I   
Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +      ++ + +                       LI +    Q++ +    D  +QVS
Sbjct: 166 TERLNKLVEELDILTLNAQPQIESDGEAEIVFLDQLLIEVMSEFQLLIEREERDIYIQVS 225

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               KI    ++ ++ILLNL   A      G K+ I  Q ++     S+K  G       
Sbjct: 226 PESAKIKSHYDKLSRILLNLLNNAFKYSDPGTKIEIVAQLTEQILTISVKDEGRGISPEN 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +       LAH+    +  E         +  L
Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEITVESQYGLGSTFTFTL 341


>gi|322412684|gb|EFY03592.1| histidine kinase protein [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 342

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 75/236 (31%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +  +      S    +++ +++ HDI +P+ +I  ++E + +       E   +  I   
Sbjct: 106 LEASFESLNESEHEKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPKEEERHYLNTISRQ 165

Query: 57  SMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +      ++ +                        LI +    Q+  +       ++V+ 
Sbjct: 166 TNRLNQLVEELHVVSLNDQKQKEKQHRQVIYLEKLLIDILSEFQLTLEQENRSVDIKVAP 225

Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              KI+   +  ++I+LNL   A         +TI            ++  G   +  + 
Sbjct: 226 EVVKINSQYDALSRIILNLVSNALKYSEASTPLTIHAYRQDQSICIDVRDKGQGIKKEDL 285

Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F ++             H +  Y    LAH+    ++ E         + LL 
Sbjct: 286 PLIFKRLYRVEASRNMKTGGHGLGLYIAKQLAHQLSGDIVVESQVGKGSSFTLLLP 341


>gi|307129983|ref|YP_003881999.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
 gi|306527512|gb|ADM97442.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Dickeya dadantii 3937]
          Length = 951

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 450 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPSDANRLVTAM 509

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
             S+ + LK +     ++      + +   E    + I                     +
Sbjct: 510 QNSSALLLKIISDILDFSKIESEQLKIEPGEFAPREVINHIVSNYLPLVVKKRLVLYCYI 569

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             +     +  +    ++L NL   A      G  V           +F ++  G     
Sbjct: 570 DPNVPFRLLGDAVRLQQVLSNLLSNAIKFTDTGCIVFQVACCDDGYLVFKMRDTGVGIDT 629

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       +       L       +  E            + 
Sbjct: 630 RAVMKLFDPFFQAGTGVQRHFQGTGLGLAICEKLVSLMDGDITIESEPGLGSEFGIRIP 688


>gi|283781850|ref|YP_003372605.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283440303|gb|ADB18745.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 760

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 65/243 (26%), Gaps = 34/243 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSM 58
           AK +  N +      LL + + H++ +P+ AI    +L+          E + +IR ++ 
Sbjct: 246 AKEVAENANREK--DLLLANVSHELRNPLHAILGYSDLVLRDLPSSVAREHLAIIRDAAE 303

Query: 59  SAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVI-------------EDFIAVD 97
           + +  +  +                 VD    +     +                     
Sbjct: 304 TQLRLVNDLLDISQLTSSTLRLQLEPVDPHSIIRRCLSITAPLATQKNIQLRLIPHTQKG 363

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGN 156
           + +  +             ++L NL   A      G     +  D ++     +++  G 
Sbjct: 364 QSLAENAPTYVEADPLRLLQVLWNLVTNAIKFSEHGEVTIHTCTDWEHSRFTITVRDRGP 423

Query: 157 LARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E+  +I D   +             +       L       +  E         +
Sbjct: 424 GIGLAEQT-KIFDPFYQIDTSLERKHGGIGLGLAICKFLVEGMGGSIRLESELSQGSEFT 482

Query: 211 ALL 213
             L
Sbjct: 483 IEL 485


>gi|262198688|ref|YP_003269897.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
 gi|262082035|gb|ACY18004.1| response regulator receiver sensor signal transduction histidine
           kinase [Haliangium ochraceum DSM 14365]
          Length = 524

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 74/232 (31%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSR--ICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRL 55
           A+     +    L AL  +   + HD+ SPIGAI NS ELL     E     E++ +I  
Sbjct: 294 ARLHQALVDKEKLSALGQAMGYVVHDLRSPIGAIVNSTELLRYELGEDSESRELLDIIEE 353

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGL-------GDIEQVIEDFIAVDKRVQVSWTGEK 108
           ++ +AI  +  +               +           +V      V+ RV     G  
Sbjct: 354 AADNAIAVVDDVLDFTREGIPSRKECEIAEVLGRLERSLEVRVRECGVNFRVTGPREGSL 413

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKF 164
           +   R+  + L NL + A  ++           I V    +E  F +  NG         
Sbjct: 414 LCDPRKVHRALENLAVNALDAVASSPTSAPAVWIEVAQEADEVRFLVCDNGPGIAPT-IM 472

Query: 165 TQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +        +   +    V  +   +   +  +            L +
Sbjct: 473 RRLFEPFATAGKENGTGLGLAIVKQIVTAHGGSITVDSSS-AGTSFVVTLPR 523


>gi|255283041|ref|ZP_05347596.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255266343|gb|EET59548.1| sensor histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 351

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 61/232 (26%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57
                 +  ++ + +   + H+  +PI +I    + L       E     + ++LI   +
Sbjct: 121 TKELRSTKEEMDSFVN-NLAHEFKTPITSISGFADYLYQTGGSIETEERMQFLKLISDQA 179

Query: 58  MSAIIRL-----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                               +          + +     +     D   +   +   +  
Sbjct: 180 QRLSSLSQNTLLLSKLEACQIVTEKETFALGEQIKQCVILLLRQFDEKHITVDIPEEFDF 239

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +         ++ +NL   A    P GG VT+    + +    S+   G      E   +
Sbjct: 240 DYCGNKELMEQVWINLLNNALKFTPEGGTVTVRCARTDSSLKISVADTGVGMN-QETQER 298

Query: 167 IVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D   ++        + I    V  +       +  E            L 
Sbjct: 299 IFDKYYQNDTSSLTKGNGIGLSIVRRITELCGGSIAVESQPGCGSTFMVFLP 350


>gi|253700689|ref|YP_003021878.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775539|gb|ACT18120.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 752

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIRL 55
              L S  + A+  L   + HD  + +G I  + EL                 ++     
Sbjct: 376 EQLLQSQKMEAVGKLAGGVAHDFNNMLGVIIGNAELAMMGVEPSGKLHDRLQGILDAANR 435

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           S+      L F R        +D  + +G + +++   I  D  V  S   +   +  + 
Sbjct: 436 SAEITRQLLAFSRQQHAEPKVLDLNVVIGKMLKMLHRLIGEDIEVVWSPGQDIWKVKLDP 495

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISV--------------QDSKNENIFSLKINGNLA 158
               +I+ NL + A  ++   G++ I                       +  +  +G   
Sbjct: 496 SQLDQIMANLCVNARDAIAGIGRMDIRTENVELSPEKRGPAEMPQGRCVMLEVSDSGCGM 555

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I +    +        +    V  +  +N   +                 
Sbjct: 556 -RREVMERIFEPFYTTKEVGRGTGLGLATVFGIVKQNDGHIEVRSEPGAGTSFRLYFP 612


>gi|170745452|ref|YP_001766909.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659053|gb|ACB28107.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 916

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 72/246 (29%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
           +A+       S  + A+  L   + HD  + +  I  SLEL+     +  +  L R    
Sbjct: 528 LARTEEALRQSQKMEAVGQLTGGLAHDFNNLLAGISGSLELMQTRMSQGRMGDLERYMTV 587

Query: 57  --------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                   +      L F R         +    + D+E+++   +     ++V      
Sbjct: 588 AQGAAKRAAALTHRLLAFSRRQTLDPKPTNVNRLVKDMEELVRRTVGPSIHLEVVGLSGL 647

Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKV--------------TISVQDSKNENIFSL 151
                +  ++    LNL + A  ++P GG++                            +
Sbjct: 648 WPALIDPGQLENALLNLCINARDAMPDGGRITIETANKWIDEAGGRQHDLSPGQYLSVCV 707

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G      +   ++ +    +    +   +    V   A ++  ++           +
Sbjct: 708 TDTGTGM-SADLVDKVFEPFFTTKPTGEGTGLGLSMVYGFARQSGGQVRIYSEVGEGTTV 766

Query: 210 SALLEK 215
              L +
Sbjct: 767 CLYLPR 772


>gi|162456999|ref|YP_001619366.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161167581|emb|CAN98886.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 947

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 62/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           + +       +  L  L     + + H++ +P+ +I     +L    ++ E ++    + 
Sbjct: 549 LDQEQRARQHAEQLNRLKDEFLATVSHELRTPLQSILGWARILRTGEVDAESLERGLATI 608

Query: 58  MSAIIRLKFMRLA------------FGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQ 101
                    +                  T  VD    L     ++               
Sbjct: 609 ERNAKAQSQLIEDVLDASTILAGKLQLRTDPVDVRQVLATALDLVRPAALAKGVAVDTSV 668

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
               G  +  +    +++ NL   A    P GG+V    +  +      ++ NG      
Sbjct: 669 ADDVGIFLGDAERLQQVVWNLLANAVKFTPSGGQVRALARRVEATLEVEVEDNGEGIPKS 728

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                    +  DG +        +    V  LA      +  E   +         L 
Sbjct: 729 FLPFLFERFRQADGGMTRAHGGLGLGLAIVRHLAEAQGGSVHAESDGEGKGARFRVRLP 787


>gi|37676294|ref|NP_936690.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
 gi|37200835|dbj|BAC96660.1| signal transduction histidine kinase [Vibrio vulnificus YJ016]
          Length = 984

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 472 AKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQKRYADIINRSGK 531

Query: 62  IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+          +S   L  + +     +              ++    
Sbjct: 532 NLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVN 591

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A     +G          + +N   F +   G      E+
Sbjct: 592 HYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQ 651

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T        S          +       +      ++     +         + 
Sbjct: 652 ATLFDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVP 706


>gi|148264080|ref|YP_001230786.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
 gi|146397580|gb|ABQ26213.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 1021

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 29/234 (12%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSA 60
           +  ++ +  L   I HD  + +  I    +++     E + +             +    
Sbjct: 628 VQKIEAIGQLAGGIAHDFNNLLTPIIGYADMIQHKLPEGDPLSGKVNGITAAAFKARDLT 687

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F R       SVD    LG+ + ++   I  +  + +      I +  +R +I  
Sbjct: 688 QQLLSFGRKQMLDMKSVDLNQVLGNFQDILRRTIRENITIDIRLASGGIAIWADRGQIEQ 747

Query: 121 NLFM---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFPE 162
            L      A  ++   G + +                        +     NG      E
Sbjct: 748 ILLNLVVNAQDAISGNGMILMETGHVMLDNEYTRLHPGVQPGPYALLDFSDNGCGMN-DE 806

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + I +    +        +    V  +  +++  +  +         S  L 
Sbjct: 807 TLSHIFEPFFTTKQVGHGTGLGLATVYGIIKQHEGYISVKSRVGEGTTFSIYLP 860


>gi|318604800|emb|CBY26298.1| osmosensitive K+ channel histidine kinase KdpD [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 899

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +       ++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLNHHHIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I            +  NG      +
Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYDALLGIRATVQGEWLNVEVWDNGPGVTAGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +        L 
Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQEGGASFHFTLP 883


>gi|296132713|ref|YP_003639960.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola sp. JR]
 gi|296031291|gb|ADG82059.1| integral membrane sensor signal transduction histidine kinase
           [Thermincola potens JR]
          Length = 547

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 72/245 (29%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELL----------DEVGI 45
            +      ++ +L  +        + + H++ +P+ AI    E L          ++   
Sbjct: 294 ERTAELAAANKELAEISQYKTEFLANMSHELRTPLTAILAFTEELLTKSMGQLNAEQEEY 353

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDK 98
             ++    R         L   ++  G            +++ G+  + + +     +D 
Sbjct: 354 LKDIRDSGRQLLNLINDLLDLSKIESGKMALNLTEVNVGEAVRGVEKLLRPLAQQKNIDM 413

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKING 155
           +  ++ T   I    +  +++ NL   A    P   R               + ++K +G
Sbjct: 414 QSAITGTNVIIADEEKVRQVIRNLLGNAIKFTPAGGRIELYVRDTDRPDEGVLLTVKDSG 473

Query: 156 NLARFPEKFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 ++  +I D   +             +    V  +   +   +  E  +      
Sbjct: 474 PGIPAKDR-ARIFDSFYQGHRGRNKEYGGTGLGLALVKRIVEMHLGEITLESTEGQGSAF 532

Query: 210 SALLE 214
           +  L 
Sbjct: 533 TVYLP 537


>gi|317130174|ref|YP_004096456.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475122|gb|ADU31725.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 475

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 65/219 (29%), Gaps = 24/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRL----- 69
           S I HD+ +PI  I     ++ +            + +I   +      +  + L     
Sbjct: 253 SHISHDLRTPITYIKGYSAVMKDAKTVEKEDLKRNLNVIYNEATRMEQLVSDLFLLTKLE 312

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                           L  L +   ++ D   +  R+++    +++ +  +  ++   L 
Sbjct: 313 EGKIKLEMELVPIGVWLENLYESRALMFDQKRIKHRIEIDKHCQELMIMMDSYRMEQALI 372

Query: 124 M---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI- 176
                A    P+ G++ + ++   NE    +K  G      +    + +    +      
Sbjct: 373 NLIENAIRHTPKDGEIELILRKDDNEVTVCVKDTGCGISKHDLPHIWERFYKADASRNRN 432

Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   ++ ++            S  L 
Sbjct: 433 DSGTGLGLAIVKEVVEAHQGKVDVYSKLGKGTTFSIHLP 471


>gi|269961047|ref|ZP_06175416.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834266|gb|EEZ88356.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 601

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVMQLIRL 55
           +       + +  L  L  + + I H++ +P+ AI +  E   L  E    + V   +  
Sbjct: 357 LRLTQDELMQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLEKEKFERVEDNLTR 416

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------S 103
            S          +    +         +      +   +    +  +             
Sbjct: 417 ISALTDRMANISQQLRSFAKKTSGNELVHTHLLPVIASVKELMKPALKSARVTLETNLLQ 476

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLAR 159
              E    + +  ++L+NL   A  +L       +                +  NG    
Sbjct: 477 QDVEVQINTIQLEQVLVNLLTNAIEALKEHDDKQVVLSVEQDSEAKLVWIHVDDNGTGLG 536

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + +  +   +       +      +L  +  +      S  L 
Sbjct: 537 AFTLSE-LCEPFLTNKQNGLGLGLSISQQILAGMNGKLSAQNREQGGARFSLCLP 590


>gi|288933211|ref|YP_003437270.1| integral membrane sensor signal transduction histidine kinase
           [Klebsiella variicola At-22]
 gi|290512015|ref|ZP_06551383.1| two-component system, OmpR family, osmolarity sensor histidine
           kinase EnvZ [Klebsiella sp. 1_1_55]
 gi|288887940|gb|ADC56258.1| integral membrane sensor signal transduction histidine kinase
           [Klebsiella variicola At-22]
 gi|289775805|gb|EFD83805.1| two-component system, OmpR family, osmolarity sensor histidine
           kinase EnvZ [Klebsiella sp. 1_1_55]
          Length = 451

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +         +             + L N+ + A      
Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIATALQAGEIPVRMHPLSIKRALANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     +   F ++ +G      +    F   V G+   +     +    V  +
Sbjct: 353 NGWIKVSSGSEASRAWFQVEDDGPGIKPEQREHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +  RL     +   +++ A L 
Sbjct: 413 IDNHNGRLEIGSSERGGLLIRAWLP 437


>gi|237510628|ref|ZP_04523343.1| sensory box histidine kinase [Burkholderia pseudomallei MSHR346]
 gi|235002833|gb|EEP52257.1| sensory box histidine kinase [Burkholderia pseudomallei MSHR346]
          Length = 723

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHPRDDAWLLRVRDNGIGI-DPQYFERI 657

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709


>gi|206580141|ref|YP_002236224.1| osmolarity sensor protein EnvZ [Klebsiella pneumoniae 342]
 gi|206569199|gb|ACI10975.1| osmolarity sensor protein EnvZ [Klebsiella pneumoniae 342]
          Length = 451

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +         +             + L N+ + A      
Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIATALQAGEIPVRMHPLSIKRALANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     +   F ++ +G      +    F   V G+   +     +    V  +
Sbjct: 353 NGWIKVSSGSEASRAWFQVEDDGPGIKPEQREHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +  RL     +   +++ A L 
Sbjct: 413 IDNHNGRLEIGSSERGGLLIRAWLP 437


>gi|182412789|ref|YP_001817855.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840003|gb|ACB74255.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 1177

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 66/232 (28%), Gaps = 25/232 (10%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM---S 59
                 L S+    +L   I HD  + +  I  +L L L +  + +  ++ +R        
Sbjct: 786  QRAARLESL---GVLAGGIAHDFNNLLTIIIGNLGLALADGKLSESTIRFLREIERGATR 842

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RE 114
            A    + +         +   I   +  +   +       V+  +              +
Sbjct: 843  ARSLTRQLLTFAEGGEPLRLPIEAPEFVRAAAERALHGSAVRAEYVVPPGLWHVLADKDQ 902

Query: 115  RAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLARFPE 162
             A+ + NL + A  ++P              G    +  +       +L  +G     PE
Sbjct: 903  IAQAIQNLVVNAIQAMPNGGALLVTFSNETIGAGDKNNLEHGRYVKITLADSGEGI-RPE 961

Query: 163  KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I D    +      +    V  +   +   +  +    +    +  L 
Sbjct: 962  VLPRIFDPYFTTRRTGSGLGLATVYSILKRHAGSIEVDSRVGYGTTFTLRLP 1013


>gi|160882267|ref|ZP_02063270.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483]
 gi|156112356|gb|EDO14101.1| hypothetical protein BACOVA_00213 [Bacteroides ovatus ATCC 8483]
          Length = 754

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 65/237 (27%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVAL-------LCSRICHDIISPIGAIHNSLELLDEVG----------- 44
           K+    L +  L+A          + + H+I +P+ +I     +L               
Sbjct: 513 KDREEELEAARLLAEKAELKQSFLANMSHEIRTPLNSIVGFANILALEDGLSSVEREEYI 572

Query: 45  -----IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                  + +++LI      + I   +M  +F      + +  +    QV+        +
Sbjct: 573 GTINKNSELLLKLINDILELSRIESGYMSFSFKKCRVRELIDDIYMTHQVLIAPRLEFLK 632

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
              +   E         ++L N    A         K+       +      ++  G   
Sbjct: 633 EVDNIPLEINVDRERLIQVLTNFLNNASKFTEIGYIKLGYIYLPDEGHVRIYVEDTGRGI 692

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+         ++       +      ++  +   R+  +         + +L 
Sbjct: 693 PREEQRMIFSRFYKQNEFSQGAGLGLSICQVIIEKLGGRIDLKSEVGKGSRFTVILP 749


>gi|123443178|ref|YP_001007152.1| sensor protein KdpD [Yersinia enterocolitica subsp. enterocolitica
           8081]
 gi|122090139|emb|CAL13002.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 899

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +       ++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLNHHHIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I            +  NG      +
Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYDALLGIRATVQGEWLNVEVWDNGPGVTAGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +        L 
Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQEGGASFHFTLP 883


>gi|119509764|ref|ZP_01628909.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
 gi|119465630|gb|EAW46522.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Nodularia spumigena CCY9414]
          Length = 1389

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 62/217 (28%), Gaps = 22/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            S + H++ +P+ ++    +LL +   +   +     +   +      +         + +
Sbjct: 1012 SILSHELRNPLNSMLGWSKLLQKKQFDQATINKGLAAIERSAQAQAHLIKDLLDISRISA 1071

Query: 80   LIGLGDIEQVIEDFIAVDKRVQVSW----------------TGEKIDLSRERAKILLNLF 123
                 D +++    +       V +                    +  +    ++  NL 
Sbjct: 1072 GRLRIDAQKLDLVSVIESAMEVVRFSAEAKNIQIESNLAPAPRSMVGDANRLQQVFWNLL 1131

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDS 178
              A    P GGKVTIS+  +  +    +   G               +  DG+   +   
Sbjct: 1132 SNAIKFTPSGGKVTISLDYTDFQAQIQISDTGYGISADFLPHVFERFRQADGSRTRSNPG 1191

Query: 179  HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              +    V  L   +   +  E   +      +  L 
Sbjct: 1192 LGLGLSIVRYLVELHGGTIDAESQGEGQGATFTVRLP 1228


>gi|331655920|ref|ZP_08356908.1| putative histidine kinase [Escherichia coli M718]
 gi|331046274|gb|EGI18364.1| putative histidine kinase [Escherichia coli M718]
          Length = 753

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +    +   +  V  L   + HD  + +  I  SLEL++    +   +Q    ++     
Sbjct: 386 EEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVNPDSPDAPRIQRALQAAERGAL 445

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R    +  +V+    L ++ +++   +     +++           + +++
Sbjct: 446 LTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPATLALEIEAQSPAWPAWIDISQL 505

Query: 119 LLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +      A  ++              +VT S    ++     +  +G+        +
Sbjct: 506 ENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRSSGQRQDMVALEVIDHGSGM-SQAVKS 564

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 565 QVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVEIESAPGQGTTVRLQLPR 616


>gi|258516891|ref|YP_003193113.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257780596|gb|ACV64490.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 544

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 69/251 (27%), Gaps = 40/251 (15%)

Query: 2   AKNICFNLSSMDLV------------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           A+ +   +  + L             A L   + H+I +P+ AI    +LL E  +  E 
Sbjct: 138 AEELEQKMMQLSLAQKAAEAANIAKSAFLA-NMSHEIRTPMNAIIGMADLLWETSLTKEQ 196

Query: 50  MQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93
            + + +   +                       +         +          Q    F
Sbjct: 197 REYVGIFRTAGQNLLNLINDILDLSKVEAGHLKLEQQDFNIKKLVEKTVEFMSVQANIKF 256

Query: 94  IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIF 149
           +++  +++    G  +       +IL+NL   A     +G  + I     +Q+      F
Sbjct: 257 LSLSYQIKPDVPGFVVGDQNRLQQILVNLLGNAIKFTEKGEVILIIEKLSMQEENVFLKF 316

Query: 150 SLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
           S+   G      EK   I +          S      +       L       +  E   
Sbjct: 317 SVSDTGIGI-EKEKSEIIFESFTQADASTTSKFGGTGLGLTICKRLVEAMGGHIGVESEI 375

Query: 204 DHNVVLSALLE 214
           +        ++
Sbjct: 376 EQGSTFFFSIQ 386


>gi|229176936|ref|ZP_04304331.1| hypothetical protein bcere0005_3160 [Bacillus cereus 172560W]
 gi|228606411|gb|EEK63837.1| hypothetical protein bcere0005_3160 [Bacillus cereus 172560W]
          Length = 369

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D+L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCNLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGCGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367


>gi|225023058|ref|ZP_03712250.1| hypothetical protein CORMATOL_03106 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305682103|ref|ZP_07404907.1| signal transduction histidine-protein kinase/phosphatase MprB
           family protein [Corynebacterium matruchotii ATCC 14266]
 gi|224944281|gb|EEG25490.1| hypothetical protein CORMATOL_03106 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658576|gb|EFM48079.1| signal transduction histidine-protein kinase/phosphatase MprB
           family protein [Corynebacterium matruchotii ATCC 14266]
          Length = 517

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 63/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD-----------EVGI 45
           +  +    L+++D      A L +   H++ +P+ ++  ++ELL            +   
Sbjct: 234 LTMSFNQMLAALDQSRQRQAQLVADAGHELKTPLTSMRTNIELLMLLQKPGAPQISDEEK 293

Query: 46  EDEVMQLIRLSSMSAIIRLK--FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +     ++      + +      +         +         +   E        V+  
Sbjct: 294 KALEHDVMAQMEELSTLIGDLVDLAREDAAETELQETDLAQVAQTAFERVRRRRPDVEFR 353

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLAR 159
                  L  +   +   +  +   +               +  +     ++  +G    
Sbjct: 354 LHVTPWYLWGDAHSLGRAILNLMDNAAKWSPADGVVRVKMTRLDEGRMQITISDSGPGIP 413

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    F +        ++    +    V  +   +   +  E  +D   +   +L 
Sbjct: 414 EEEREKVFERFYRCIQSRSMPGSGLGLAIVRQVVDRHGGSITAEESEDGGAMFRMILP 471


>gi|167840004|ref|ZP_02466688.1| sensory box histidine kinase [Burkholderia thailandensis MSMB43]
          Length = 709

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 64/232 (27%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 475 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 531

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 532 ATRMQSLIDDLLSYSRVGRLEDARQPVDGERALDEALRNLSAAIRESGAQITHDRLPVVH 591

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKFTQI 167
               +++L L  +   ++    K  ++          +  +F ++ NG     P+ F +I
Sbjct: 592 GIAAQLVLLLQNLIGNAIKFRSKDRVAQIHLEADARDDAWVFRVRDNGIGI-DPQYFERI 650

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 651 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGRGTTFSFTLSR 702


>gi|149914993|ref|ZP_01903522.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. AzwK-3b]
 gi|149811181|gb|EDM71018.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. AzwK-3b]
          Length = 586

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +A        S  L AL  + + + H++  P+ A+   L     LL+    +        
Sbjct: 347 LAVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLNRNRPDEALSSFQR 406

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGE 107
           +  LI            + R +      V+    L      +          +  +   E
Sbjct: 407 IDDLIERMGSITRQLKSYARQSGDTFAPVNLGDALSSALSMMEPQLRQRHVNITRTLPEE 466

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEK 163
            + +  +R ++   +  +   ++        +  D         + +++ NG+     E 
Sbjct: 467 PVLVMADRVRVEQVMINLLRNAMDATEGTDDASIDILLAAGETAVLTVRDNGHGI---ED 523

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F  + +    +    D   +       + ++   RL          V    L 
Sbjct: 524 FDNLFEPFYTTKQPGDGVGLGLAISSGIVNDLGGRLTARNASGGGAVFEVQLP 576


>gi|119478375|ref|ZP_01618383.1| Multi-sensor Signal Transduction Histidine Kinase [marine gamma
           proteobacterium HTCC2143]
 gi|119448584|gb|EAW29830.1| Multi-sensor Signal Transduction Histidine Kinase [marine gamma
           proteobacterium HTCC2143]
          Length = 987

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 65/230 (28%), Gaps = 22/230 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + S  L ++  L + + H+I +PI AI    + L       E ++  +   +    
Sbjct: 749 EDELIHSERLASIGRLAAGVAHEIGNPITAIACLAQNLRYDTDNPESLETGKEIIVQTGR 808

Query: 63  R--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                           +              +     +  + +D   V        T   
Sbjct: 809 VSKIVQTLVNFSHAGTENSHHEREPVHLKSCVDEAIHLLHLNKDAKIVSFDNHCPGTIYI 868

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  ++   ++ +NL   A  + P    +++  +        ++   G+         QI 
Sbjct: 869 LGDTQRLLQVFVNLLSNARDASPALSSISVDSKALNERVSITVTDTGSGIENSH-QEQIF 927

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIID---DHNVVLSALL 213
           D    +    +   +    V  +  +    +  E      DH    +  L
Sbjct: 928 DPFFTTKEAGEGTGLGLALVYSIVDDLDGHISVESPVNGTDHGTRFTIRL 977


>gi|189425993|ref|YP_001953170.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
 gi|189422252|gb|ACD96650.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter lovleyi SZ]
          Length = 415

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 71/231 (30%), Gaps = 18/231 (7%)

Query: 1   MAKNICFNLSS----MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           + +     L +      LV L  L + + H++ +P+  I    +LL E   E    +   
Sbjct: 180 LQQRDLQRLEAMARHEQLVRLGELGAVLAHEVRTPLAGIKGFAQLLRERVQESREREYAG 239

Query: 55  LSSMSAIIR----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                +              +   +  G    ++ +    D          V  ++  + 
Sbjct: 240 KIVAESERLEGLVTDLLTYTRQETMQAGSAVVLELVQDAWDHLAEEALQAKVALQITGAV 299

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +      +    ++LLNLF  A  ++P+GG + + + D   +    +  +G      E  
Sbjct: 300 SRPVACPADRLRQLLLNLFTNAQQAMPQGGDLRVDLSDDGEQATILISDSGPG-FAEESL 358

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
            +  D    +      +       +A      +            ++ LL 
Sbjct: 359 KRAFDPFYTTRASGSGLGLAVCHKIAAGYGGTVRLANARSGGGAEVTLLLP 409


>gi|75910023|ref|YP_324319.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
 gi|75703748|gb|ABA23424.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
            29413]
          Length = 1297

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 60/238 (25%), Gaps = 25/238 (10%)

Query: 2    AKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
             +     +    +  +     + + H++ SP+  I    +LL    ++            
Sbjct: 906  EQERAARIELERANRMKDDFLAIVSHELRSPLNPILGWAKLLKSRKLDALKTNQALEVIE 965

Query: 59   SAIIRLKFMRLA------------FGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                    +                    +VD +  +      V     +    +Q   T
Sbjct: 966  RNAKLQAGLIDDLLDVSRILRGKLSLNVCTVDLVTTIEAALETVRLTAESKSIHIQTDLT 1025

Query: 106  GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +  +     +++ NL   A    P GG++ + ++   +     ++  G       
Sbjct: 1026 ASVCRVEGDPNRLQQVVWNLLSNAVKFTPEGGEIEVKLERVGSLAHIQVRDTGKGISLDF 1085

Query: 163  ---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                F +    +           +    V  L   +   +      +      +  L 
Sbjct: 1086 LPYVFERFRQADEVTTRKFGGLGLGLAIVRHLVELHGGSVQVTSPGEGLGTTFTVKLP 1143


>gi|325838906|ref|ZP_08166712.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325490647|gb|EGC92958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 623

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 63/220 (28%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           +++ H++ +P+ AI   ++LL       + ++ I +   S+ + LK +     ++   D 
Sbjct: 394 AKVSHELKTPLNAIKGYIQLLKLSIDNPKQLRQIEIIDHSSDLLLKQVDELLDFSVIEDG 453

Query: 80  LIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLNLF 123
            + L      +     V + + +                              +I++NL 
Sbjct: 454 KVKLEIDTIDLFQTAHVIEELFIINTSKKSLDYVVNIDEQIPSVLYGDEARIKQIIINLM 513

Query: 124 MVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174
             A                   +++      +K  G      +  +        + ++  
Sbjct: 514 SNALKFTEHGKIEVSFDLDYQTETEVYLSIRVKDTGKGIAENKLNSIFDSFTQENNSISR 573

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       LA      L+ E   +     +  L 
Sbjct: 574 QFGGTGLGLSISKRLAEVMGGNLIVESQVNVGSTFTLFLP 613


>gi|310818980|ref|YP_003951338.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392052|gb|ADO69511.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 513

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/226 (8%), Positives = 64/226 (28%), Gaps = 17/226 (7%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSS 57
               L  +  +    +++ HD+ +PI A+  + + L E          + + + L+    
Sbjct: 273 QRERLEHLATLGRFSAQMAHDLKNPIAALKGAAQFLKEEHTQGHSWEDKGDFLDLLLEQV 332

Query: 58  MSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                     + +      T  +D    + D+  +         +++ +   +    + +
Sbjct: 333 ERLDRVVSTYQRLGRVEPLTRPLDVNRLVEDVLGLQAFAGFPHVKLERALARDLPLCAGD 392

Query: 115 RAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +   L  +   +     +       T          +  ++  G       +  +  
Sbjct: 393 HDLLANALENLVRNACEAMPRGGTLTVRTRREDPDGRSVMLCVEDTGEGMDARTR-ERAF 451

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +   +V  +   +   +     + H  +L   L 
Sbjct: 452 DEFFTTKASGSGLGLAFVRRVVEAHGGEVSLTSREGHGTILLLRLP 497


>gi|307265850|ref|ZP_07547400.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919125|gb|EFN49349.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 457

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 64/237 (27%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------ 50
           +AK     L  +        +  S   H++ +PI  I   +++LD  G ED+ +      
Sbjct: 219 LAKTFNGMLDRLEDSFKRQNMFVSDASHELRTPISVIKGYIDMLDRWGKEDKAVLQEAIE 278

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQV 102
              +            L   +              L D+ +     +     + +  V+ 
Sbjct: 279 AIKRETLDMEHLIERLLLLAKGDNKSIKLNKEQFNLKDVIKEVAEEIKMLNESKNIVVKG 338

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +   +++      A       G + I V    ++    +K +G      +
Sbjct: 339 QNDINITADKKLIKELIRIFLDNAAKYTSSDGNIEIDVGKDNSKAYIKIKDDGIGIPQED 398

Query: 163 K---FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +           +       +  E+K  +  +         +  L 
Sbjct: 399 IPHIFDRFYRVDKARAKETGGAGLGLAIAKWIIEEHKGSVTVKSEVGKGSEFTITLP 455


>gi|307298320|ref|ZP_07578124.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916406|gb|EFN46789.1| Hpt sensor hybrid histidine kinase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 776

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 67/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56
           + +       + +  +   +R+ H+I +P+ AI     LL +          V ++ + S
Sbjct: 126 LERAKREAEDANEFKSSFMARMSHEIRTPLNAITGMAYLLKKTEISLTQSMYVDRITQAS 185

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104
           +    I    +  +    G V+  I    ++Q+I+D + +                    
Sbjct: 186 NNMLSIINDILDFSKIEAGKVELEITSFSMDQIIQDVVNIVSYKIEEQGIGFRLSKDPLI 245

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
                   +   +ILLN+   A      G           ++ K    FS++  G     
Sbjct: 246 PNWFFGDQKRIEQILLNILNNAAKFTSAGEVSLDVRLVAKENEKYHLSFSVRDTGIGMTE 305

Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +     +        +        +    V  L      ++               L
Sbjct: 306 EQIKNLFMPFIQGDSTINRRFGGSGLGLSIVKNLVEMMGGKIEVFSTPGEGSTFIIHL 363


>gi|295838625|ref|ZP_06825558.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces
           sp. SPB74]
 gi|295827101|gb|EFG65239.1| signal transduction histidine-protein kinase afsQ2 [Streptomyces
           sp. SPB74]
          Length = 573

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 65/230 (28%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55
           + + +    +  +      + + H++ +P+ AI    E+L+E     + M     +L+  
Sbjct: 294 LERRVADMSAREESSRRFVADMSHELRTPLTAITAVTEVLEEEIDTLDPMIEPAVRLVVS 353

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +      ++ +     +          D  I       V          +         
Sbjct: 354 ETRRLNTLVENLMEVTRFDAGTARLVCDDVDIADQITACVDARAWLDAVELDAERGITAR 413

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
              R    IL NL   A         V +SV+      +  ++ +G        P  F +
Sbjct: 414 VDPRRLDVILANLIGNALKHGG--SPVRVSVRVEGPSLVIRVRDHGPGIPEDVLPHVFDR 471

Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +   +        AH +   +      D   V +  L +
Sbjct: 472 FYKASASRPRSEGSGLGLSIAQANAHIHGGDITAANSPDGGAVFTLRLPR 521


>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1191

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 65/244 (26%), Gaps = 33/244 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           A++I   L      A           + + H+I +P+  +    ELL +  ++ E  + +
Sbjct: 523 ARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTLDAEQQEYL 582

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVD 97
            +   S+   L+ +     ++      + +  I                 +  +  + V 
Sbjct: 583 NIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAHDKGLEVV 642

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKI 153
             V        +       ++L+N+   A     RG  V    Q+  +        ++  
Sbjct: 643 WDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNGKPLLHLAVSD 702

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +  +     +              +       L       +  E       V
Sbjct: 703 TGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVESTPGQGSV 762

Query: 209 LSAL 212
               
Sbjct: 763 FHFT 766


>gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
 gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D2]
          Length = 1353

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 826  KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883

Query: 63   RLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107
             L  +     Y  +           ++   L     +  D +A  K++  +        E
Sbjct: 884  LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKE 943

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            ++        I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 944  ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|289580119|ref|YP_003478585.1| integral membrane sensor signal transduction histidine kinase
           [Natrialba magadii ATCC 43099]
 gi|289529672|gb|ADD04023.1| integral membrane sensor signal transduction histidine kinase
           [Natrialba magadii ATCC 43099]
          Length = 409

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 56/236 (23%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + + +    +S + +    S + HD+  P+  I   L+LL+E           + +    
Sbjct: 159 LRRTVRQLEASNEQLDHFASTVSHDLQEPLRMISRYLQLLEERYGDELDEDATDFIDYAV 218

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +      +  +          +                   +       D  +     
Sbjct: 219 DGADRMQAMVTGLLEYSKIDTQANGGQFERVDVEQTLQDVRTDLQVRIDESDAEITTESL 278

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSLKINGNLARFPE 162
            +      +  ++  NL   A                  ++  E  F+++  G       
Sbjct: 279 PQVYANPSQLRQLFQNLLSNAIEYSGDEPPRVHVSAAPSETGTEWEFTVRDEGIGIEPS- 337

Query: 163 KFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +               I       +   +   L  E       V S  L 
Sbjct: 338 AQDRIFELFQRLHALDDHSGSGIGLALCQRIVEHHGGELWVESEPGVGSVFSFTLP 393


>gi|220934204|ref|YP_002513103.1| two-component sensor CbrA [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995514|gb|ACL72116.1| two-component sensor CbrA [Thioalkalivibrio sp. HL-EbGR7]
          Length = 986

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 63/219 (28%), Gaps = 18/219 (8%)

Query: 13  DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
            L ++  L + + H+I +P+  I +  + L     E E     +            ++  
Sbjct: 758 RLASIGRLAAGVAHEIGNPLTGIASLAQNLHYEPDESERELSAQQILEQTRRINNIVQSL 817

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------K 117
             ++ + +          +        + VQ+S T                        +
Sbjct: 818 ITFSHTGEVPSTAMGAVDIKICVDEAMQLVQLSDTARAHLFENRLPPGITVRGSHQKLLQ 877

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI- 176
           + +NL   A  +   G ++ I  + +       ++  G          ++ +    +   
Sbjct: 878 VFVNLINNAMQASGPGDRIRIQGEATAGFAEILVEDEGTGIPET-LLDRVFEPFFTTKPP 936

Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  ++   +  + +       +  L 
Sbjct: 937 GEGTGLGLSVVYSIIQDHGGAVYVDNLPQGGACFTLRLP 975


>gi|253698673|ref|YP_003019862.1| histidine kinase [Geobacter sp. M21]
 gi|251773523|gb|ACT16104.1| histidine kinase [Geobacter sp. M21]
          Length = 290

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 65/241 (26%), Gaps = 32/241 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIR 54
               L    L  +  +   I HD+ + +  I  +LELL +            D  +   R
Sbjct: 48  EKQLLQVQKLAGVGVMAGSIAHDLNNLLMGISGNLELLRQAIEPEAASQKYMDHALDASR 107

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111
            ++  +   L F R       SVD    + +   +++  +     +      E   +   
Sbjct: 108 RAANLSRQMLAFSRKGGQEVKSVDLNRLVAENLDLMKGSMRKGISLSARLEPELPPIEAE 167

Query: 112 SRERAKILLNLFMVAHASL------------------PRGGKVTISVQDSKNENIFSLKI 153
             +  ++++NL   A  +L                              S       +  
Sbjct: 168 PGQMQQLIVNLITNAAEALGETGAIDVSTGFADLPAAEFTWSRVEPKPASGRFVFIEVSD 227

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G      E   ++      +      +    V  +   +   +L +        +   L
Sbjct: 228 SGCGM-DGETSDRMFHPFFSTKAAGRGLGLAAVRWMVKASGGAILVDTAPGEGTTIKVFL 286

Query: 214 E 214
            
Sbjct: 287 P 287


>gi|182414650|ref|YP_001819716.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177841864|gb|ACB76116.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 964

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++     +     +   + + H++ +P+  +   L+LL        + +   ++  SA
Sbjct: 433 LARDAAERATKAK--SDFLAVMSHELRTPLAGVIGVLDLLRNNPPAHLLREYTAVARDSA 490

Query: 61  IIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              L+ +                        +    + +  ++  +   ++ +   S   
Sbjct: 491 ESLLRILDDILDTAKIEAGKLRIEAVPFRPREVFKNVCEAARLRAEAKKLEFKHIFSANM 550

Query: 107 EKI--DLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARF 160
            ++         +++ NL   A      G          V+      + +++  G     
Sbjct: 551 PEVLVGDPVRLRQVVDNLQNNALKFTESGSITVTLTCPEVRKESVVFLIAVRDTGCGIDQ 610

Query: 161 P---EKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 F +    +           +    V  LA      +  E         + ++ 
Sbjct: 611 ATQLRLFEKFEQADVSTTRRYGGTGLGLSIVKALAESMNGSVSVESEPGRGATFTFVVP 669


>gi|108756960|ref|YP_634851.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
 gi|108460840|gb|ABF86025.1| response regulator/sensory box histidine kinase [Myxococcus xanthus
           DK 1622]
          Length = 671

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
                  L+S    + L +   H++ +P+ A      L       +      + +++I  
Sbjct: 420 RAETALRLASEAKDSFLAAA-SHELRTPLAAAKGHAHLALLKLGGETEAGPGKSLKIINR 478

Query: 56  SSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTG 106
                   ++ +                  D    + +    +       +  V+ S   
Sbjct: 479 QIDRMAKLVEDLLDISRLQAGRLSLELERFDLSHLVHETRDRMAVLSQGHEIHVEASDQL 538

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPE--- 162
           E         ++L NL   A    P GG V + VQ +       S+   G      +   
Sbjct: 539 EGTWDRGRLDQVLTNLLSNALRYSPEGGPVWVRVQGEHDEGVHLSVTDTGVGIPKEKQGL 598

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLEK 215
            F +       S      +       +  ++  R+  E   +          L +
Sbjct: 599 IFERF-GRAHGSKYGGLGLGLTISQGIVEQHGGRIWVESPGVAGEGSTFHVWLPR 652


>gi|94264253|ref|ZP_01288047.1| PAS [delta proteobacterium MLMS-1]
 gi|93455298|gb|EAT05505.1| PAS [delta proteobacterium MLMS-1]
          Length = 799

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 67/240 (27%), Gaps = 26/240 (10%)

Query: 2   AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                    S +L             + HD+  P+  I++ ++LL     +    +   +
Sbjct: 555 RAEEELRKRSAELARSNAELEQFAYVVSHDLRQPLRRINSYMQLLKRAPNDQLDDESREM 614

Query: 56  S-------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQV 102
                        + +  +  +                        ++ +    +  V +
Sbjct: 615 MGLAAGGVQRMDQMLVSLLEYSRVGRKGEPMAPLASREVVDEALDFLVPEINETNATVHI 674

Query: 103 SWTGEKIDLSRE-RAKILLNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLA- 158
           S    +I  SR+   ++  NL   A     L R  +V I+V     +  FS+  NG    
Sbjct: 675 SGDWPEIVASRDEFTRLWQNLIGNALKYCGLDRVPEVEIAVTPGDGDWRFSVADNGIGID 734

Query: 159 -RFPEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
            +  ++  ++          +   I       +   +  R+  E             L +
Sbjct: 735 PQQFDRLFKVFQRLHTRDQYEGTGIGLAVARKIVERHGGRIWVESQGAGMGCRFIFTLPR 794


>gi|83647884|ref|YP_436319.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635927|gb|ABC31894.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 540

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 64/233 (27%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS---------LELLDEVGIEDEVMQL 52
            ++   ++S + ++  + + I H++  P+ AI N           E LD+  +++ + ++
Sbjct: 292 QRSQLAHISRLSMMGEMAAGIAHEVNQPLTAIVNYIRVANRIAKAEQLDKALMDETLKKI 351

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---- 108
                 ++ +               + L      + ++E      K   +          
Sbjct: 352 ESQCLRASQVIQHIRDFVKKPLQGKEILSANTLAKDILELAEIEAKEHGIELRANIEPLL 411

Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161
                   +  ++ LNL      ++              Q +    +F +   G      
Sbjct: 412 PELYIEPVQVQQVALNLLRNGMEAMGHANMRGSVKFKVAQANGKGILFEVTDEGPGV-AE 470

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    +      +      I       + H +   +     +         L 
Sbjct: 471 EHQNNLFSPFFTTKKSGMGIGLTLCQSIIHSHGGEIGFRPGESGGSTFYFTLP 523


>gi|189345724|ref|YP_001942253.1| histidine kinase [Chlorobium limicola DSM 245]
 gi|189339871|gb|ACD89274.1| histidine kinase [Chlorobium limicola DSM 245]
          Length = 231

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 65/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLA--- 70
           S + H++ +P+ +I      L             E + +I   S      ++ + +    
Sbjct: 7   STVSHELRTPLFSILGFTGTLLREQDELERETRMEFISIIHDESKRLSALIEDVLMISKI 66

Query: 71  ------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
                 +  +    S+        +       +  +++        +  ++    ++ +N
Sbjct: 67  DSGRVSYKKSELDPSITVSEVCRSLKIRADEKNIDLRLRVCAPMEHIFADQDSLKQVAIN 126

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST----ID 177
           +   A    P GG V +S+        FS++ NG      E                 +D
Sbjct: 127 IIGNALKFTPPGGVVQVSLFCEAQTMCFSVEDNGPGIPAEEAEKIFEKFFRVERPGEAVD 186

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +   +  + + + + V    L 
Sbjct: 187 GTGLGLSIVKEIVAAHDGTVEVKSVPNQSTVFMVRLP 223


>gi|302341505|ref|YP_003806034.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301638118|gb|ADK83440.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 568

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 26/234 (11%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRLSS--- 57
              L +  L A+  L + I H+I +P+  +      LE L E                  
Sbjct: 326 ERMLEAGRLAAVGELAAGIAHEINNPVAIMVEEAGWLEDLLEEDDVVSNADRAEFERALA 385

Query: 58  ------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWT- 105
                          +      T      I + ++ Q     + +     + ++Q     
Sbjct: 386 QIKTQGARCKGITHKLLSFARKTDPEAREISVNEMIQEALSLLAQKSRYANVKIQARLQP 445

Query: 106 --GEKIDLSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     E  ++L+NL   A  ++   GG VT+S +   ++ +  +   G      E
Sbjct: 446 GLPSVKASPSELQQVLVNLVNNAVDAIGAAGGAVTVSSERVGDKIVLKVADTGKGIPEAE 505

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D    +        +       + H+   ++  E            L 
Sbjct: 506 LS-RIFDPFFTTKPVGQGTGLGLSICYGIIHKLGGQISVESQLGQGTTFVITLP 558


>gi|302036482|ref|YP_003796804.1| putative histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604546|emb|CBK40878.1| putative Histidine kinase [Candidatus Nitrospira defluvii]
          Length = 645

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 67/225 (29%), Gaps = 16/225 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58
                  +    L ++  L + + HD+ +P+G I +S ++ L+    E    ++ R    
Sbjct: 416 RSQQHELIRQEKLASVGQLLAALAHDLRNPLGVIRSSAQVVLEGPQEEPIRQEMARYIID 475

Query: 59  SAIIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                   +     Y               +    + Q          R++  +      
Sbjct: 476 EVDKLSLRLHDFLRYARQKPPDLKAEPAEAVVRAALRQWEAQGGHERIRIEQQFGNALPS 535

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  +  ++   L      A  ++P GG +T  +     N+    +   G+    PE  ++
Sbjct: 536 IQVDPEQVKEALMNLLINAREAMPEGGTLTLTTRAGPGNKVEIEVADTGSGI-APEHLSR 594

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           I +    +      +    V  L  +N   L            S 
Sbjct: 595 IFEPFFTTKAYGTGLGLTNVKRLVEDNGGTLAVTSSQGMGTTFSL 639


>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
 gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
          Length = 916

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 52/240 (21%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK      S     +   + + H+I +P+  I    ELL +  +  +  +       S 
Sbjct: 257 LAKESAEAASKAK--SEFLATMSHEIRTPMNGILGMTELLLQTQLNRDQQRFAETVQSSG 314

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVS 103
                                   +   D +  + D   +              + +  +
Sbjct: 315 RHLLGIINDILDFSKIESDHMELESIDFDLVQLIEDTLAMFAQPADKKGLELAAQFIPPN 374

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLAR 159
                   S    +I  NL   A     +G  V  +               ++  G    
Sbjct: 375 RAFMVRGDSFRLRQIFANLISNAIKFTSQGEVVIRTQLCEAAGSRVNLRICVEDTGIGIP 434

Query: 160 FPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          G+         +       L       +  +            LE
Sbjct: 435 PEYHKKIFQQFSQADGSTTRQYGGTGLGLTICKKLLELMGGSIHIDSTPGQGTKFQINLE 494


>gi|256422621|ref|YP_003123274.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
 gi|256037529|gb|ACU61073.1| PAS/PAC sensor signal transduction histidine kinase [Chitinophaga
           pinensis DSM 2588]
          Length = 566

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 54/216 (25%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFM--------- 67
           + I H++ +PI +I  S +LL +     +  E  +L++  +  A   LK           
Sbjct: 346 ATISHELKTPIASIKMSAQLLTDTRVGAVNREQEELVKSIADDANRLLKITSELLNISQV 405

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
               +          +I       V       +  +++        +  +  K    L  
Sbjct: 406 ETGHIQLKIEPVFPDIIIDNATNTVSALAQQKNIAIRIHNNTHAHKIMTDPEKTAWVLTN 465

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID---S 178
               A    P  G++ ++     N   FS+  +G                          
Sbjct: 466 FLTNAVKYSPEDGEIDLTTSIRNNSVEFSVADHGRGIEEKYLSRIFDRYFKVPGTPEKVG 525

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +               +  +            L 
Sbjct: 526 TGLGLSISREFIEAQGGTIWVDSTLGEGSTFGFTLP 561


>gi|163939391|ref|YP_001644275.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|229132383|ref|ZP_04261237.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
 gi|229166419|ref|ZP_04294175.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|163861588|gb|ABY42647.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           weihenstephanensis KBAB4]
 gi|228616993|gb|EEK74062.1| hypothetical protein bcere0007_13910 [Bacillus cereus AH621]
 gi|228651089|gb|EEL07070.1| hypothetical protein bcere0014_13190 [Bacillus cereus BDRD-ST196]
          Length = 591

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 68/237 (28%), Gaps = 27/237 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           M +          +     + + H++ +P+  +    E + +  ++ +    + +++   
Sbjct: 355 MTEERRL----EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYD 410

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG 106
            ++                      + G VD    +  I  +        + ++ V +  
Sbjct: 411 ESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQS 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +     ++L NL   A      GG VT+ +    +   F ++ +G      + 
Sbjct: 471 PIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDI 530

Query: 164 ---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   T        +       +   +  ++    +       S  L 
Sbjct: 531 PFLFDRFYKADKARTRGKKIGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTTFSVYLP 587


>gi|187929099|ref|YP_001899586.1| multi-sensor signal transduction histidine kinase [Ralstonia
           pickettii 12J]
 gi|187725989|gb|ACD27154.1| multi-sensor signal transduction histidine kinase [Ralstonia
           pickettii 12J]
          Length = 442

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 53/217 (24%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM------ 67
             + + H++ +P+  +   LE + +       +   + ++   +M     ++ +      
Sbjct: 210 FVANVSHELKTPLTVLSGFLETVRDIPLPEEDKRRYLDMMHTQAMRMQHLVEDLLALATL 269

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        +  ++     +            +             E      NL 
Sbjct: 270 EGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRHTVSMTCDPAVSVCGAELELLSAFSNLA 329

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG + +         ++S+   G     PE   ++ +              
Sbjct: 330 SNAVRYTPDGGTIRLDWGVRDGHAVYSVTDTGIGI-APEHIPRLTERFYRVDRSRSRDTG 388

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +   L             A+  
Sbjct: 389 GTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425


>gi|94264410|ref|ZP_01288200.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455167|gb|EAT05385.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 478

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 78/230 (33%), Gaps = 19/230 (8%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            + +   L     LVAL  + + + H++ +P+ +I     LL         +      ++
Sbjct: 248 RREMEKELQKNQQLVALGKMAAGVAHEVRNPLSSIKGLATLLGGRFAADDRDHDTARLLI 307

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTG 106
             +   + S    L + R       ++D    L D  +++E   +      +    +   
Sbjct: 308 NEVERLNRSIGELLDYARPLPLDRRAIDLNELLRDSLKLVESDASRQGVKLEFTPAAGQP 367

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I       ++LLNL++ A  ++P GG + ++           +  +G     PE    
Sbjct: 368 RPILDRDRLLQVLLNLYLNALQAMPAGGTLRLTATVQGGLVRLWVGDDGQGI-APEHLKV 426

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214
           + D    +  +   +    V  + +E+  RL             +   L 
Sbjct: 427 VTDPYFTTKPEGSGLGLAMVQKIINEHGGRLWLTS-PGKQRGTTVEIELP 475


>gi|87200289|ref|YP_497546.1| histidine kinase [Novosphingobium aromaticivorans DSM 12444]
 gi|87135970|gb|ABD26712.1| histidine kinase [Novosphingobium aromaticivorans DSM 12444]
          Length = 394

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 55/216 (25%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSSMSAIIRLKFM 67
             +   H++ +P+ +I   +E L +                V++  R         +   
Sbjct: 169 FVANASHELRTPLASIIGYIETLADPDAKVDEATAARFHATVLREARRLQSLVEDLMSLS 228

Query: 68  RL----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           R+           +D    +G I       +   +    +         ++  +++ NL 
Sbjct: 229 RIEAEKHELPRDRIDLGQLVGSIASETAMTVGDGRLEVETCPALVAGDRQQLDQLVRNLI 288

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDS 178
             A         V + V    NE   S+   G             +              
Sbjct: 289 DNAFKYGDTAAPVAVKVAIHGNEAELSVTDRGEGIHPDHLPYLTRRFYRTDPGRSRAAGG 348

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   ++ +L           ++  L 
Sbjct: 349 TGLGLAIVKHIVERHRGKLDIASQLGIGTTVTVRLP 384


>gi|91782579|ref|YP_557785.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia xenovorans LB400]
 gi|91686533|gb|ABE29733.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia xenovorans LB400]
          Length = 944

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++   N+ S  L   L S I HD+ +P+  I     +L +        +L+      A+
Sbjct: 668 ARDALVNMESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQSPDAQPNAELVEAIHEEAL 727

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDL 111
                +             + L     +              +  +  VQV    +   L
Sbjct: 728 RMTGIVTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLANHPVQVKLPADLPLL 787

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLA---RFP 161
             +     ++  NLF  A         +TI  Q            ++  NG         
Sbjct: 788 HLDAVLMERLFSNLFENAAKYTAPATPLTIGAQRLDTDGKSFVRVTVDDNGPGLPAGMEA 847

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD-----HNVVLSALLE 214
             F +   G  ES      +       +   +   +                    L 
Sbjct: 848 RVFEKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIGALNRVSANGHVEGARFWFTLP 905


>gi|83816795|ref|YP_444479.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
 gi|83758189|gb|ABC46302.1| two-component system sensor protein [Salinibacter ruber DSM 13855]
          Length = 1111

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 56/245 (22%), Gaps = 34/245 (13%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----------- 50
            AK     L+ M    L  + + H+I +P+ +I    E++ +                   
Sbjct: 861  AKEEAERLNRMKSAFL--ANMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTAL 918

Query: 51   -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101
             Q   L   S    L+ +      +      + L      + D +A    +         
Sbjct: 919  DQFADLIEESGHRLLETLDTVLNLSRLEAGEMELDCSPLNLADEVAEATDLFEPQALTEG 978

Query: 102  -------VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
                                    L NL   A      GG V +      ++    ++  
Sbjct: 979  IDLQGETAEGPLWARVDEGGLRIALQNLISNALKYTEEGGTVRVRAGRRGDDVALEVEDT 1038

Query: 155  GNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            G               +        T +   +          +    +  E         
Sbjct: 1039 GVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGEGSCF 1098

Query: 210  SALLE 214
            +  + 
Sbjct: 1099 TVRVP 1103


>gi|317123601|ref|YP_004097713.1| PAS/PAC sensor hybrid histidine kinase [Intrasporangium calvum DSM
           43043]
 gi|315587689|gb|ADU46986.1| PAS/PAC sensor hybrid histidine kinase [Intrasporangium calvum DSM
           43043]
          Length = 1090

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 59/236 (25%), Gaps = 24/236 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMS 59
            +     L  +D   +   + + H++ +P+  I     E L + G+  E  + + L   +
Sbjct: 321 ERQRAETLEVLDAAKSSFFTNVSHELRTPLTLIAGPVAEALGDPGLTPEQRERLDLVQRN 380

Query: 60  AIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +   + +                    +D  +    +               V      
Sbjct: 381 TVRLTRMVDAMLDFGRMAANKLQPLPEPLDVALQTRTMADSFTQAFDRAGLDFVVDCDHA 440

Query: 109 IDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---- 160
              +        +++LNL   A    P G         +      S+   G   R     
Sbjct: 441 PRTAHLDRDMYERVVLNLLSNALKYTPAGSVRLRLECSADGFA-VSVADTGIGIRRRDLA 499

Query: 161 --PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+F Q+             I    V  L       +  E         +  L 
Sbjct: 500 RIFERFEQLPRRGRARFQGGAGIGLAMVKQLTELMGGSVDVESTLGRGSTFTIRLP 555


>gi|304311694|ref|YP_003811292.1| hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
 gi|301797427|emb|CBL45647.1| Hypothetical protein HDN1F_20640 [gamma proteobacterium HdN1]
          Length = 1000

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 55/236 (23%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K +    ++        + + H++ +P+ AI    E L++  +     Q    + + +
Sbjct: 613 LEKELATASATAK--GDFLANMSHELRTPLTAIIGYSESLNDQSLSATDEQQAVDTIIRS 670

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----------------VQVS 103
              L  +         V++ I   +   +    +  D                       
Sbjct: 671 SHHLLNIINDILDFSKVEASIVEVENVPLNPYLLLKDVYSYFTQKARSQNLAFEVVYHFP 730

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPE 162
                        +ILLNL   A      G        D + +     +   G      +
Sbjct: 731 LPNRIHADPTRLKQILLNLCSNALKFTKEGSVTIDVGWDEERKLTRFSVIDTGAGLSEEQ 790

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                                  +       LA +    +            +  +
Sbjct: 791 IGKLFQSYAQAEASTARQFGGTGLGLVISKQLAEKMGGTIEVTSEPGKGSCFTVYI 846


>gi|294643685|ref|ZP_06721486.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294806835|ref|ZP_06765661.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292640987|gb|EFF59204.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294446005|gb|EFG14646.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 802

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 63/232 (27%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++   N   +     L + + HD+ +P+ AI    EL+            +     S+
Sbjct: 315 LEQSDKRNRELLRSRKELMASVAHDLRTPLAAIRGCAELMPSENDVSRRTDYLDNILHSS 374

Query: 61  IIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WT 105
              L  +     Y       V S   + ++E + E+     +   +              
Sbjct: 375 DYMLGLVNTLMEYHQLDESGVRSNNTVFNLEALFEEIADSHRLAALQKDLAFTASFSGLD 434

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                 S    +I  NL   A      G     +     N     ++  G      E   
Sbjct: 435 AIVCCDSSHIRQIAGNLLSNALKFTFHGEVRLEAEYRPGN-LRIVVRDTGVGINAKERER 493

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F      +    I    +     + L  E + R+  E +       S  L 
Sbjct: 494 IFGAFERLDSARNIPGFGLGLAITVRLVSEMQGRVEVESVPSEGSRFSVFLP 545


>gi|20092182|ref|NP_618257.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
 gi|19917410|gb|AAM06737.1| sensory transduction histidine kinase [Methanosarcina acetivorans
            C2A]
          Length = 1447

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 68/244 (27%), Gaps = 31/244 (12%)

Query: 2    AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
             K I  NL     +A +         + + H++ +P+ +I    ++L E     +  + +
Sbjct: 1192 EKKISENLLHEKQMAEIANRTKNDFLANMSHELRTPLNSIIGFSDMLYEQAYGELNRKQL 1251

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDK 98
            + I   S S    L  +      +    + + L   E             +       + 
Sbjct: 1252 RAIGNISSSGKHLLNLINGILDLSKIEANKMELNYREFDLATKLELIRNVLYPVADKKNI 1311

Query: 99   RVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
             +++    E   +  +     +I+ NL   A         V I  + + N    ++   G
Sbjct: 1312 DIEIDMDTELTKICADEEKFTRIMYNLVDNAIKFSYENSLVKIGARKNGNLVEITVTDAG 1371

Query: 156  NLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
               +  ++                      +    V  + + +   +            +
Sbjct: 1372 IGIKAEDQHKLFKPFSQVNSFPSKKFQGTGLGLSLVKQIVNLHGGYVWFRSEQGEGSTFA 1431

Query: 211  ALLE 214
              + 
Sbjct: 1432 FAIP 1435


>gi|37521628|ref|NP_925005.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212626|dbj|BAC90000.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 682

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 62/233 (26%), Gaps = 27/233 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII- 62
                +    L  L      H++ +P+  I    +LL +  +++        +       
Sbjct: 357 EEANRIKDEFLATL-----SHELRTPLNPIIGFTQLLRKGQLDEASAARALETIERNARA 411

Query: 63  --------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107
                             +RL          +    D  +       ++ R ++      
Sbjct: 412 QSRIIEDMLDLSRIITGKLRLEVRPVALATVVEDALDTVRFAAQSKNIELRARLDPNVVL 471

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-- 165
               S    +++ NL   A    P  G + + ++  + E + +++ +G            
Sbjct: 472 PFGDSNRLRQVVWNLLSNAIKFTPENGSIEVQLERGRAEAVLTVRDSGVGIAGDFLPHVF 531

Query: 166 ---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              +  +     +     +    V  L   +   +  E    D     +  L 
Sbjct: 532 ERFRQANSTTTRSHGGLGLGLAIVRQLVELHGGTVGVESPGSDQGATFTVRLP 584


>gi|117925682|ref|YP_866299.1| response regulator receiver sensor hybrid histidine kinase
           [Magnetococcus sp. MC-1]
 gi|117609438|gb|ABK44893.1| response regulator receiver sensor hybrid histidine kinase
           [Magnetococcus sp. MC-1]
          Length = 518

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVG 44
           + K      +      L  + + H+I +P+ AI    ELL                   G
Sbjct: 132 LQKERAEAANQAKNAFL--AMVSHEIRTPMNAIMGMNELLTLTQLTDKQQEYVATQKRAG 189

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +  ++    L           + LA  Y   V +++      Q     I  +   Q   
Sbjct: 190 EDLLILLDDVLDVCDMERGAFTLTLAPFYLADVVAVVQAVVGAQASAKGIGFNITCQSGL 249

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             + +       ++LLNL           G V++ ++       F ++  G      +  
Sbjct: 250 AEQLVGDRHRITQVLLNLCGNGVKFT-HEGSVSMLLETHPKGVCFVVRDTGIGIGAGD-Q 307

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D                 +  +    L       L  +         + ++ 
Sbjct: 308 ARIFDAFSQSDVSLTRRYGGLGLGLHITRQLVELMHGTLRLQSQQGQGTTFTVVIP 363


>gi|324327910|gb|ADY23170.1| sporulation kinase B [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 424

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|262403778|ref|ZP_06080336.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
 gi|262350282|gb|EEY99417.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC586]
          Length = 830

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 60/240 (25%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 439 KQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLTDEQREHVAVLCS 498

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  + + +    R+      +K          
Sbjct: 499 SGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLNELVYAIDRIYRPLCNDKGLELVVDSNI 558

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G    +      +   + +  +   G   R
Sbjct: 559 TSAVLVRSDQVRINQILFNLLNNAIKFTHQGSIRVVLELIEGDPLAQLVIQVVDTGIGIR 618

Query: 160 FPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +                       +    V  L      +L               L 
Sbjct: 619 EQDLTVIFEPFVQAESTTTREYGGSGLGLAIVHSLVEMLSGQLHVSSEYGRGTRFEIQLP 678


>gi|256004999|ref|ZP_05429971.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|255991068|gb|EEU01178.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
          Length = 1105

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 69/243 (28%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEV 49
                  L + +L       +   + + H++ +P+ +I    ++L           + E 
Sbjct: 519 RTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKDMEK 578

Query: 50  MQLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           +++I  +    +  +             M L      S + +  L  + +       +  
Sbjct: 579 IEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKNISF 638

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGN 156
            V+ S     +    + ++IL N    A      G         +D +N+ IFS+   G 
Sbjct: 639 FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFSVTDTGI 698

Query: 157 LARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                         + VDG +        +       LA   K  +              
Sbjct: 699 GIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEGSTFFL 758

Query: 212 LLE 214
            L 
Sbjct: 759 KLP 761


>gi|254476816|ref|ZP_05090202.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
 gi|214031059|gb|EEB71894.1| sensor histidine kinase/response regulator [Ruegeria sp. R11]
          Length = 778

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 52/225 (23%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------L 64
           A L   + H+I +P+  +    ELL +  + +E          S                
Sbjct: 218 AFLA-NMSHEIRTPMNGVVGMAELLSDTNLSEEQRLYANTIKNSGEALLVIINDVLDYSK 276

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKIL 119
              +    +    D    + ++  +++               +      +       ++L
Sbjct: 277 IEAQKLILHPEPFDLERSVHEVLMLLQPTAREKGLNLILDYDLFLPTSFVGDPGRIRQVL 336

Query: 120 LNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG---- 170
            NL   A      G          S +D       +++  G      +      +     
Sbjct: 337 TNLVGNAVKFTTEGHVNLQITGISSPEDEFCSIHVAIEDTGIGIPAEKVQHIFGEFNQVD 396

Query: 171 -NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +   +       L       +  E            ++
Sbjct: 397 DEQNRKFEGTGLGLAITKRLIELMGGEIWVESEVGKGSCFGFRIK 441


>gi|281417008|ref|ZP_06248028.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281408410|gb|EFB38668.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 1160

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 69/243 (28%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEV 49
                  L + +L       +   + + H++ +P+ +I    ++L           + E 
Sbjct: 519 RTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKDMEK 578

Query: 50  MQLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           +++I  +    +  +             M L      S + +  L  + +       +  
Sbjct: 579 IEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKNISF 638

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGN 156
            V+ S     +    + ++IL N    A      G         +D +N+ IFS+   G 
Sbjct: 639 FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDVIFSVTDTGI 698

Query: 157 LARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                         + VDG +        +       LA   K  +              
Sbjct: 699 GIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEGSTFFL 758

Query: 212 LLE 214
            L 
Sbjct: 759 KLP 761


>gi|186686383|ref|YP_001869579.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186468835|gb|ACC84636.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 762

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 71/241 (29%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +   F    ++ +  L S I HD+ + +  I    +LL     D       +++++ +++
Sbjct: 381 EAQLFRAQRLESIGTLASGIAHDLNNILTPILAGAQLLPLKFPDADERTHHLLEILEINA 440

Query: 58  MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKID 110
                 +K +            ++     + ++ +++++      ++             
Sbjct: 441 RRGADLVKQVLSFARGVEGKRITLQLRHLIVEVAKILKETFPRSIQISTDVLQDLWMVSG 500

Query: 111 LSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155
            S +  ++L+NL + A  ++P GG                              ++   G
Sbjct: 501 DSTQLHQVLMNLCVNARDAMPNGGSLIISAENLLIDENYARMNLEAKEGPYIAITVSDTG 560

Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 E   +I +    +        +    V+ +   +   +               L
Sbjct: 561 VGI-SKEILDRIFEPFFTTKDVGKGTGLGLSTVLGIIKSHGGFVNVYSELGSGTSFKVYL 619

Query: 214 E 214
            
Sbjct: 620 P 620


>gi|119953538|ref|YP_945748.1| sensor protein HydH [Borrelia turicatae 91E135]
 gi|119862309|gb|AAX18077.1| sensor protein HydH [Borrelia turicatae 91E135]
          Length = 386

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIR 54
                    +  L A       I H+I +P+GAI  +L+LL +      +         +
Sbjct: 138 KHKEELFRRAEALAAFTRHARNIAHEIKNPLGAIDINLQLLKKEIDRQSIKSTKANNYFK 197

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +         K +         +          D +  + ++     +   +   + +  
Sbjct: 198 IIKEEINRMDKTVTDFLLTVRPIKIVPEKRNITDVIKSVYNLLNPELNNKDIKFLLNLKK 257

Query: 105 TGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160
               +   +   ++++N+   A  +L     +  K+ IS+ ++  +    +K NG+    
Sbjct: 258 VSPALIDEKLIRQVIINIVKNAEEALLESNKKTKKIEISIHENTEKIYIGIKDNGHGI-K 316

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            E    I      +      I       +  E+   +  E  +      +  L K
Sbjct: 317 NETKDDIFKPQFSTKESGSGIGLTISYKIIKEHGGEIFVESKETKGTSFTITLPK 371


>gi|115377551|ref|ZP_01464750.1| sensory box histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|310821655|ref|YP_003954013.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365438|gb|EAU64474.1| sensory box histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|309394727|gb|ADO72186.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 724

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 73/252 (28%), Gaps = 41/252 (16%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50
            +    N+ +  L A+  L + I H+I +PI  +  +L+LL +   + E           
Sbjct: 473 RRMEQQNIQNDRLAAMGVLTAGIAHEINNPISYMLANLDLLRQWEDDLEQQLPALPGLPP 532

Query: 51  -------------------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE 91
                               L     +  +  L         +  VD    L  +  + +
Sbjct: 533 ELLERLPEARSVIADCIEGSLRIGDIVRGMRLLSHTGQGDVLS-PVDIHRSLDAVLHIAQ 591

Query: 92  DFIAVDKRVQVSWTGEKIDL---SRERAKILLNLFMVAHASLPRGGKVTISVQDS----K 144
             +    R++  +      +        ++ LNL + A  ++  G      +       +
Sbjct: 592 GELKHTARLKQDYARNLPMVLGSEGRLGQVFLNLIINAVHAMRPGSPADHVLHIRSRLDE 651

Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEII 202
            +    +   G+    PE   +I D    +        +       +  +    +  E  
Sbjct: 652 GQVRIDISDTGHGI-PPEVLPRIFDPFFTTKPAGIGTGLGLSISYAIIQKMGGSMRVESR 710

Query: 203 DDHNVVLSALLE 214
             H    S LL 
Sbjct: 711 VGHGTTFSLLLP 722


>gi|15896910|ref|NP_350259.1| sensor protein KdpD [Clostridium acetobutylicum ATCC 824]
 gi|18273032|sp|P94608|KDPD_CLOAB RecName: Full=Sensor protein kdpD
 gi|15026781|gb|AAK81599.1|AE007863_2 Sensor protein KdpD (ATPase containing sensor domain and histidine
           kinase domain) [Clostridium acetobutylicum ATCC 824]
 gi|325511086|gb|ADZ22722.1| Sensor protein KdpD (ATPase containing sensor domain and histidine
           kinase domain) [Clostridium acetobutylicum EA 2018]
          Length = 900

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 77/235 (32%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +     +    L + L   I HD+ SP+  I  +        EL+DE   ++ +  +  
Sbjct: 664 QEKSKVEIERERLRSNLLRSISHDLRSPLAGIKGAASTILENGELIDEKRKQELINGIYE 723

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------IAVDKRVQVSWTGEK 108
            +     +    + +     G+      +  +E+V+ +          + +++VS   + 
Sbjct: 724 DTEWLIRLIENLLSMTKFDEGNTKIKKDVELVEEVVSEAVQRSSKYFKNHKIKVSVPEDV 783

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +S +     ++++NL   A    P+G  + I V + K + +F +   G          
Sbjct: 784 IMVSMDGSLIEQVIINLLDNASKFSPKGSTIEIKVYEKKKDVVFEIIDEGQGISEDILPN 843

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +  +     +       +   +  ++          +    + K
Sbjct: 844 IFDRFFTNGSKISDSRRGVGLGLAICKSIVEAHGGKIEAVNKGSGGAIFKFNIPK 898


>gi|332527231|ref|ZP_08403299.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rubrivivax benzoatilyticus JA2]
 gi|332111651|gb|EGJ11632.1| osmosensitive K+ channel signal transduction histidine kinase
           [Rubrivivax benzoatilyticus JA2]
          Length = 467

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 65/234 (27%), Gaps = 20/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     + S  L   L S I HD+ +P+ A+    + L           L+     SA 
Sbjct: 215 AQQSALQIESERLRNSLLSAISHDLRTPLAALVGLADTLAIAPPGPAPRGLVDAIRESAR 274

Query: 62  IR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---------SWTGEK 108
                    + +A    G+V        +E+V+   +A  + V                 
Sbjct: 275 RMAALVGNLLDMARLQAGAVRLRRAWQPLEEVVGSALAACQPVLQGRPVTVALADGLPLL 334

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFT 165
              +    ++L+NL   A    P G  + I  +         +   G           F 
Sbjct: 335 SLDAVLFERVLVNLLENAARYTPPGSTLVIRAEALDQTVRLVVDDQGPGLPPGREEALFE 394

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
           +   G  ES      +       +   +   +      +         +  L +
Sbjct: 395 KFERGERESATPGVGLGLAISRAIVQAHGGTIRGANRLEAGRVAGARFTIELPR 448


>gi|329849802|ref|ZP_08264648.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
 gi|328841713|gb|EGF91283.1| non-motile and phage-resistance protein [Asticcacaulis biprosthecum
           C19]
          Length = 836

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 70/238 (29%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------------GI 45
           MAK      +     +   + + H++ +P+ AI+   E++                   I
Sbjct: 585 MAKIRAEAANHAK--SEFLANMSHELRTPLNAINGFSEIMATEMFGPLGHARYKEYAGDI 642

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                 L+ L +    +              V     + D  +++               
Sbjct: 643 LGSGQHLLSLINDILDMSKIEAGKMTLRIEPVSLDEVIEDTLRLVRQRAEKAGLKIRVHM 702

Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +  ++  +     +ILLNL   A    P+ G VTIS   + N    ++   G      +
Sbjct: 703 PQLPEIEADFRALKQILLNLLTNAIKFTPQHGTVTISAAMTDNNVHIAVADTGIGIAAKD 762

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++             T +   +       L   +  RL  +  +     ++ +L 
Sbjct: 763 -MERLARPFEQIENQFSKTKEGTGLGLALTKSLIEMHSGRLEIDSTEGQGTTVNVILP 819


>gi|312958366|ref|ZP_07772887.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
 gi|311287430|gb|EFQ65990.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
          Length = 437

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 9/220 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+D      + M        + 
Sbjct: 211 MAEDVEQAGREREL---MLAGVSHDLRTPLTRLRLSLELMDNHTDLTDDMVRDIEDMDAI 267

Query: 61  IIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           + +              +     L        +  +   R+++              ++L
Sbjct: 268 LDQFLAFIRDGRDEVVEEVDLTDLVREVVAPYNQSSEQVRMRLEPIQPFALRRISMKRLL 327

Query: 120 LNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
            NL   A             +S  ++    + S+   G      E    F     G+   
Sbjct: 328 NNLIGNALHHAGSDVEVAAYVSGDNAAPYVVLSVMDRGAGIDPAELEGIFNPFTRGDRAR 387

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +A  +   +     +   +     L 
Sbjct: 388 GGKGTGLGLAIVRRIASMHGGNVELRNREGGGLEARVRLP 427


>gi|268317981|ref|YP_003291700.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
 gi|262335515|gb|ACY49312.1| multi-sensor signal transduction histidine kinase [Rhodothermus
           marinus DSM 4252]
          Length = 662

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 60/233 (25%), Gaps = 23/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     ++ +   + L + + H++ +P+  +    +++ E      +            
Sbjct: 422 AREEAEAMNRLK--STLLTNLSHELRTPLTTVIGFADVIREEAAPGTLFHEFAQLIADGG 479

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL-- 119
            RL  +         +++       E+++                E+  L     +    
Sbjct: 480 RRLLHLMEEVMDLAQLEAQTLKAGRERLLLPERLRPLMATYRARAEQKGLKFRVQQAPGV 539

Query: 120 -------------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                         +L   A     RGG VT+  +  +++    ++  G           
Sbjct: 540 AVWADPELLERAVEHLLDNAIKFTERGG-VTVRFRQVEDQVGIVVEDTGIGIPEAALPHV 598

Query: 167 IVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +          T +   +              R+  E         +  L 
Sbjct: 599 FDEFWQASSGIGRTHEGLGLGLAVARRFVEIMGGRIEVESTPGRGSRFTIWLP 651


>gi|238917774|ref|YP_002931291.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Eubacterium eligens ATCC 27750]
 gi|238873134|gb|ACR72844.1| two-component system, OmpR family, phosphate regulon sensor
           histidine kinase PhoR [Eubacterium eligens ATCC 27750]
          Length = 475

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 64/235 (27%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA  +     S        S I HD  SP+ +I   LE + +  I  E++       +  
Sbjct: 241 MASQLN---ESDKFQQKFLSNISHDFRSPLTSIKGYLEAIQDGTIPPEMLDKYIGIMLFE 297

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------- 113
             RL  +         +D      DI     + I          T +K  +         
Sbjct: 298 TERLTKLTSNILTLNELDPKSVCLDISVFDLNSIIRHTVETFEGTCKKKGIKFNITYANS 357

Query: 114 ---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       +++ NL   A      G  + I+V++   +   S+K  G      +  
Sbjct: 358 IQNVKADKGRIQQVIYNLIDNAIKFSKDGSYIYITVKEKGEKAQISIKDTGCGISKEDID 417

Query: 164 --FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +     D     +       +   +   +               LE
Sbjct: 418 KIWDRFYKSDSSRGRDKKGSGLGLSITKEVIQAHGENIDVVSTLGVGTEFIFTLE 472


>gi|206890531|ref|YP_002249149.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742469|gb|ACI21526.1| two-component system sensory histidine kinase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 890

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53
           + +     L  +D L +   + + H++ +P+ AI    +LL +         +   ++ +
Sbjct: 286 LLQKANKQLKELDTLKSAFIANMSHELRTPMNAIIGYTDLLLDEVDGPLNDDQKTSLKKV 345

Query: 54  RLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--- 102
             ++   +  +                +   +D    +  I    E  IA          
Sbjct: 346 AANARHLLQLINDVLDISKIESGKIELHPREIDLKELIDGIMVTFEPLIAKKGLSFTLNI 405

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------KNENIFSLKI 153
            S   +      +  +IL+NL   A     +GG    +                  S+  
Sbjct: 406 ESGAEKLYVDEDKTKQILINLISNAVKFTHQGGITIKAKVSERGKAKDGSPQFIEISVSD 465

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G   +  +                   +   +    V  L   +K  +  E        
Sbjct: 466 TGIGIKREDLDKIFDKFAQADVSTTRQYEGTGLGLSIVRGLVALHKGMVWAESEVGKGST 525

Query: 209 LSALLE 214
              LL 
Sbjct: 526 FYVLLP 531


>gi|167820093|ref|ZP_02451773.1| two-component sensor kinase protein [Burkholderia pseudomallei 91]
          Length = 709

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 468 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 524

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 525 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 584

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 585 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 643

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 644 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 695


>gi|163797148|ref|ZP_02191103.1| PAS/PAC domain [alpha proteobacterium BAL199]
 gi|159177664|gb|EDP62217.1| PAS/PAC domain [alpha proteobacterium BAL199]
          Length = 666

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 79/236 (33%), Gaps = 22/236 (9%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51
            + +     ++++     +   + + +++ +P+ AI    E+L++         + E  +
Sbjct: 422 QRALQERTEALEMADRLKSEFLANVSYELRTPLNAIIGFSEILEQEYAGPMNDRQKEYAR 481

Query: 52  LIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            I  SS   +  +            ++ L       +  +  +  + +       +D  V
Sbjct: 482 AILQSSNRLVRLVNDILDLASIEAGYLELERIEVDPLRLIEAVEGLGRERARARRIDFSV 541

Query: 101 QVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           ++  T   I +   R  + L NL   A A  P GG+V ++V+D  +  +F +   G    
Sbjct: 542 RIDGTVAPIMVDERRLTQALYNLVSNAFAFTPDGGRVLVTVEDDDDMVLFRVADTGVGIA 601

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++                 +    V  L   +   +       H   +   + +
Sbjct: 602 LEDQGRVFDRFERAGRDAGAGLGLALVKSLVELHHGTVELLSEPGHGTEVICRIPR 657


>gi|170724519|ref|YP_001758545.1| osmolarity sensor protein [Shewanella woodyi ATCC 51908]
 gi|169809866|gb|ACA84450.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella woodyi ATCC 51908]
          Length = 436

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 8/213 (3%)

Query: 8   NLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRL 64
           ++  ++   ALL + I HD+ +P+  I  + E++  ++  ++D ++  I          +
Sbjct: 224 SMKQLEQDRALLMAGISHDLRTPLTRIRLASEMMVEEDEYLKDGIVHDIEDMDAIINQFI 283

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            ++R     T   + +  L       E        V+++   +         +IL NL  
Sbjct: 284 AYIRQDQESTREQEQINYLIQDVVQAESNREGKIEVELATCPDIPMQGIAIKRILSNLVE 343

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDI 181
            A        K++           FS++ NG        PE F     G++        +
Sbjct: 344 NAFRYGQGWVKLSSHFD--GKRVGFSVEDNGPGIPEDQIPELFQPFTQGDIARGSVGSGL 401

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   ++  ++     +  +     L 
Sbjct: 402 GLAIIKRIVDRHQGEVILTNRAEGGLHAQVWLP 434


>gi|76819580|ref|YP_335541.1| sensory box histidine kinase [Burkholderia pseudomallei 1710b]
 gi|254264074|ref|ZP_04954939.1| sensory box histidine kinase [Burkholderia pseudomallei 1710a]
 gi|76584053|gb|ABA53527.1| sensory box histidine kinase [Burkholderia pseudomallei 1710b]
 gi|254215076|gb|EET04461.1| sensory box histidine kinase [Burkholderia pseudomallei 1710a]
          Length = 723

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709


>gi|119716583|ref|YP_923548.1| PAS sensor protein [Nocardioides sp. JS614]
 gi|119537244|gb|ABL81861.1| PAS sensor protein [Nocardioides sp. JS614]
          Length = 668

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 56/222 (25%), Gaps = 19/222 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRLSSMS 59
              +L A     + HD+ +P+ AI    E++ +             +           M 
Sbjct: 444 RRAELAAF-AGVVAHDLRNPLAAIDGWTEMIADELDSGNLSADLARDFVSRVRSSSRRMR 502

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
            +IR                 + L  +   +      + RV+V      +       ++L
Sbjct: 503 ELIRDLLAHATASQRDLEVERVDLAALVAEVATARHAESRVRVDPLPVVLADPVLVRQVL 562

Query: 120 LNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--- 173
            NL   A   +        V    +         +  NG      E   ++ D       
Sbjct: 563 DNLIGNALKYVAAGVEPEIVVQGCRTDSRMVTVQVADNGIGIPAGE-HERVFDEFHRAHY 621

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              +   +    V  +   +   ++          +    L 
Sbjct: 622 RDYEGSGLGLSIVRRIISRHDGTIVARANPSGQGSMFEFTLP 663


>gi|330954362|gb|EGH54622.1| sensor histidine kinase [Pseudomonas syringae Cit 7]
          Length = 933

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 71/232 (30%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               + S  L ++  L + + H+I +PI  I    + L E          I  ++++  +
Sbjct: 694 EDKLVHSERLASIGRLAAGVAHEIGNPITGIACLAQNLREEREEDGELKEISSQILEQTK 753

Query: 55  LSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             S      + F                        +  +      V      +     +
Sbjct: 754 RVSRIVQSLMSFAHAGAHQHSDEAVCLAVVAQDAIGLLALNRRNFEVQFYNLCNPEHWAV 813

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +  A++L+NL   A  + P G  V +  + S++     ++  G+         ++ +
Sbjct: 814 GDPQRLAQVLINLLSNARDASPAGSAVRVRSEVSEHTVDLIVEDEGSGI-SKAIMDRLFE 872

Query: 170 GNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLEK 215
               +    +   +    V  +  E+  ++  +   D        +   L +
Sbjct: 873 PFFTTKDPGEGTGLGLALVYSIVEEHYEQITIDSPADPEQQRGTRIRVTLPR 924


>gi|328952324|ref|YP_004369658.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
 gi|328452648|gb|AEB08477.1| multi-sensor hybrid histidine kinase [Desulfobacca acetoxidans DSM
           11109]
          Length = 946

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +        ++ +  L   I HD  + +  I  +  L    L     E   + +I  + +
Sbjct: 570 EEEQARADKLESLGFLAGGIAHDFNNILAVIRGNAGLALLSLPAGSRELNNLIVIEGACL 629

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113
            A    + +         V  L  L ++ Q    F      V+  +            + 
Sbjct: 630 KAQSLAQQLLTFAQGGVPVKKLSDLKELIQETFIFATRGSPVRCEFNLATDLWAAEIDAG 689

Query: 114 ERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNENIFSLKINGNLARFP 161
           + +++  NL + A  ++P G               +            ++   G      
Sbjct: 690 QISQVFHNLAINAVQAMPTGGAIRVQAENAVLQTSSGFSLPPGEYVKITVTDQGVGILPK 749

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++ D    +      +    V  +  ++   +  +       V    L 
Sbjct: 750 YL-AKVFDPYFTTKQVGSGLGLTTVFSIVKKHGGDISVQSTLGEGTVFVIHLP 801


>gi|320194695|gb|EFW69325.1| Aerobic respiration control sensor protein arcB [Escherichia coli
           WV_060327]
          Length = 778

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPEDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|313202675|ref|YP_004041332.1| integral membrane sensor signal transduction histidine kinase
            [Paludibacter propionicigenes WB4]
 gi|312441991|gb|ADQ78347.1| integral membrane sensor signal transduction histidine kinase
            [Paludibacter propionicigenes WB4]
          Length = 1204

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 64/234 (27%), Gaps = 20/234 (8%)

Query: 1    MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            + ++      S    A   +  ++ H+I +P+  +  +++ L       +   +D   + 
Sbjct: 970  LEQSARLLAKSERESAWRSMARQVAHEINNPLTPMKLTIQQLQRTKKMQDKQFDDYFEKS 1029

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG---------DIEQVIEDFIAVDKRVQVS 103
              +         +       +    ++                  +  +           
Sbjct: 1030 SVMLIEQIDNLSRIAGTFSNFARMPEASFVRVDVAAKIYSVFRLFMNNNEHVTMHYEGAE 1089

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFP 161
                      +  ++  NL   A  ++P   +  IS++ ++   E   ++  NG      
Sbjct: 1090 QNVFVYADPEQLVQVFNNLIKNALQAIPEEREGEISIRLTEEAKEVTITVSDNGAGI-VA 1148

Query: 162  EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            E   ++   N  +      +       +   +   +      D     +  L K
Sbjct: 1149 EIQDKLFIPNFTTKSTGMGLGLAIAKNIIEISGGSITFSTAIDEGTTFTVRLPK 1202


>gi|308272535|emb|CBX29139.1| hypothetical protein N47_J01200 [uncultured Desulfobacterium sp.]
          Length = 772

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 73/236 (30%), Gaps = 24/236 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRL 55
            +     L +  L +L  L   I HD  + + AI  ++ L            + +    L
Sbjct: 394 KRTEEELLKAKKLESLGILAGGIAHDFNNILTAISGNISLAKMDVDSDSKIFDFLNAAEL 453

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---- 111
           +S+ A      +         V  +  +  I +    F+    + +  ++  +       
Sbjct: 454 ASVRAQALTMQLLTFAKGGTPVKEISSIASILKESSLFVLTGSKSKCEFSIAENLWSVEA 513

Query: 112 -SRERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLA 158
              + ++++ N+ + A+ ++P GG + I   +                 + ++K  G   
Sbjct: 514 DPGQISRVINNIVINANQAMPEGGVIQIRAWNKEIEKEHGLPVKPGRYIMITIKDQGVGI 573

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I D    +      +       +  ++   +      D   + +  L 
Sbjct: 574 AENNLS-KIFDPYFSTKQTGRGLGLASAYSIIKKHHGHISVNSSQDKGTIFTIYLP 628


>gi|262171204|ref|ZP_06038882.1| sensor histidine kinase [Vibrio mimicus MB-451]
 gi|261892280|gb|EEY38266.1| sensor histidine kinase [Vibrio mimicus MB-451]
          Length = 701

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 57/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 308 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTAKQRQHLTSLYESG 367

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
              +  +     Y+                   +G I+ +                 +  
Sbjct: 368 EHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHSDIID 427

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
           T           +I+ NL   A     +G           D +      ++ +G      
Sbjct: 428 TRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIDDEYFLTIKVQDSGIGI-PQ 486

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +   +I                   +    V  +A      +  +            
Sbjct: 487 DALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEVR 543


>gi|255008019|ref|ZP_05280145.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313145735|ref|ZP_07807928.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
 gi|313134502|gb|EFR51862.1| two-component sensor histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 794

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 61/234 (26%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53
           +AK +       +L     + + H+I +P+ AI     +L        +   +  ++ +I
Sbjct: 550 LAKQMA---EKAELKQSFLNNMSHEIRTPLNAIVGFTNVLIGEGSEEIDPDEKASMLDII 606

Query: 54  RLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             ++   +  +  +                 +  +          + +I+  +     + 
Sbjct: 607 NHNNELLLKLINDVLEISRLDSGSLDFEIKEWDMTEIMKEIYLTYQPLIQPSLQFHLELG 666

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF 160
                          +++ N    A+     G  +     D ++      +K  G     
Sbjct: 667 NPVPLLVHIDRFRFTQVISNFLNNANKFTQNGHIILGCKVDEEHHEVCIYVKDTGKGIDE 726

Query: 161 PEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E              +    +      ++      R+            + +L
Sbjct: 727 KELMMIFDRFYKTDEFEQGSGLGLAISKVIIERLSGRIEVHSEKGKGSCFAVIL 780


>gi|256829549|ref|YP_003158277.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256578725|gb|ACU89861.1| histidine kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 742

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 67/251 (26%), Gaps = 37/251 (14%)

Query: 1   MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           MA+     + ++              +   + + H+I +P+  +   L+LL+      E 
Sbjct: 352 MAQERQVAVDALRAAKDAAEDASRSKSEFLANMSHEIRTPLNGVLGMLQLLESGRPSAEQ 411

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGS----------------VDSLIGLGDIEQVIEDF 93
            + +  +  S     + +      +                  V   I         E  
Sbjct: 412 REYVETAIRSTNRLTRLLSDILDLSRIESNKLVIQEESFAVADVRQSILDIFETPAREKG 471

Query: 94  IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENI 148
           + ++ RV                +IL NL   A    P+G      V  S       +  
Sbjct: 472 VRLEVRVDPRIPAHLFGDEARLRQILFNLVGNAVKFTPKGQVAVNFVLVSAAGESTCQIR 531

Query: 149 FSLKINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
           F+++ +G                   G+   +     +    V  L      +L  +   
Sbjct: 532 FTVQDSGVGIPSERLKDIFEPFIQVDGSCVRSHQGAGLGLAIVRRLVDLMHGQLQIQSTQ 591

Query: 204 DHNVVLSALLE 214
               ++   L 
Sbjct: 592 GEGTLVGVTLP 602


>gi|170749079|ref|YP_001755339.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655601|gb|ACB24656.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 991

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/221 (8%), Positives = 50/221 (22%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H++ +P+ A+    E++ E   +     L+             + L      
Sbjct: 497 SQFLANMSHELRTPLSAVIGYSEMVQEELEDIGEADLVTDMKKIETNARHLLGLINDVLD 556

Query: 76  SVDSLIGLGDIEQVIEDFI---------------AVDKRVQVSWTGEKIDLSRERAKILL 120
                    +I     +                      + +           +  K+  
Sbjct: 557 ISKIEADRVEIYAEDFEVAAVVQEVAVTVEGLVAKKGNTLALELEPNLGSAHTDVTKLRQ 616

Query: 121 NLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VE 173
            L  +   +        I+  V  +     F++   G      +    F +    +    
Sbjct: 617 CLINLLSNAAKFTEDGRITLAVTRADGALRFAVTDTGIGMTQEQLGKLFERFTQADASTT 676

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +        A      +  E  D      +  L 
Sbjct: 677 RRFGGTGLGLAITRAFAEMLGGAIAVESRDGAGTTFTLTLP 717


>gi|148657294|ref|YP_001277499.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
 gi|148569404|gb|ABQ91549.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus sp. RS-1]
          Length = 572

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 58/235 (24%), Gaps = 27/235 (11%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
                S   V LL   + HD+ +P+ A+   LELL    + D    LI  +  +      
Sbjct: 337 AMRQQSERNVTLLAQMVIHDLKNPLTALIGFLELLSTGELNDPQRALIESALRTGRNLAG 396

Query: 66  ------FMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEKIDLSR 113
                  +         +                          K + +        +  
Sbjct: 397 LVDDLLDLARYNEGRLRLRLSDVSLPDLCAECAIELSGWLAYESKTLILDVPQTLPTIRA 456

Query: 114 E---RAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +     ++LLNL   A    P G             D   + +  +   G     P++  
Sbjct: 457 DSRLLRRVLLNLLSNALKHTPYGTTIMLRAWREPHPDGGEQTVIEVADTGPGI-PPDQIE 515

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +          +   S  +   +  +    +   +               L 
Sbjct: 516 RIFEPFVGAGESRPARQSSTGLGLAFCKMAVDAHGGTIEVSSFPGDGATFRIRLP 570


>gi|58582420|ref|YP_201436.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427014|gb|AAW76051.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1402

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 70/247 (28%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            K +   + +        +   + + H+I +P+ AI   L LL    +      ++    
Sbjct: 665 EKQLRLAMDAAKSANQSKSDFLANMSHEIRTPMNAILGMLYLLQRSELPGAAQDMVAKID 724

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            SA   L+ +     ++              D      +I +++   ++      +    
Sbjct: 725 RSARTLLEIINDILDFSKIEAGRIDLECAPFDLNQLFDNIAELMRSSLSAKPVEMIVEPL 784

Query: 107 EKIDLSR-----ERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGN 156
            +             ++L+NL   A     +G      +   S   +K + +FS++  G 
Sbjct: 785 PRDSRWLLGDALRINQVLVNLVGNAIKFTEQGEVVLSVRRFPSGDPNKFKLLFSVRDTGI 844

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV-- 208
                EK + I                   +       L       L  E +        
Sbjct: 845 GI-SKEKQSLIFSPFLQADTSTSRRYGGSGLGLTISRRLIELMGGELEVESVPGRGSEFY 903

Query: 209 LSALLEK 215
               LEK
Sbjct: 904 FVITLEK 910


>gi|75907391|ref|YP_321687.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75701116|gb|ABA20792.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 676

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 73/240 (30%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +   +    ++  L +   + I H++++P+  +      L       +       ++   
Sbjct: 432 LRDALLAAEAASRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQRQRDYLQTIH 491

Query: 58  MSAIIRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            S    L  +      +                  +    IE ++E  ++    +++   
Sbjct: 492 DSGEHLLDMINDILDLSQIEAGKTVLNIAEFSLIKVAENTIESLVEKALSEKVNLKLDLQ 551

Query: 106 GEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +              +IL NL   A    P GG VT+ V   ++ +IF ++  G     
Sbjct: 552 IDPRRDRFTADAARIEQILWNLLTNAIKFTPEGGNVTLRVWVEEDTSIFQVEDTGIGIPE 611

Query: 161 ------PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  EKF Q+         +   +       L   ++ R+  E       + +  + 
Sbjct: 612 EQLPLLFEKFQQLDTPY-RRRYEGTGLGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 670


>gi|146277153|ref|YP_001167312.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555394|gb|ABP70007.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 346

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 14/237 (5%), Positives = 53/237 (22%), Gaps = 32/237 (13%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
               + A+     + + H++ +P+ A+   +E L     ++       + ++   +    
Sbjct: 108 EQEQMGAIRRDFVANVSHELRTPLTALLGFIETLQGAAREDPAARARFLAIMAREAGRMN 167

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLS 112
             ++ +                              +     A    ++ +     + L 
Sbjct: 168 RLVQDLLSLSRVEAEERVRPVTQVDVSAVIGQAVAALRPMAEAAGVAIERTGETGHLPLP 227

Query: 113 RERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
            +  ++      +   +               +    +          +   G       
Sbjct: 228 GDADQLTQVFHNLIENAVKYGASGKLVTVEVTRDPDGLARLGPAVRIEVVDRGEGIDAIH 287

Query: 160 FPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P    +    +           +    V  + + ++ R   E            L 
Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFRIESELGKGSRFIVTLP 344


>gi|117924342|ref|YP_864959.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117608098|gb|ABK43553.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1041

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-- 59
           AK +    S+        S + H++ +P+ AI    +++     E         +     
Sbjct: 659 AKEVAERASAAK--TRFLSSMSHELRTPMNAILGFAQVMQSDPNEPLSESQRECTREIIQ 716

Query: 60  -------------------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                                     M          +++  +  +       +      
Sbjct: 717 AGGHLLELINDVLDLAKIEENRISLKMAPVHVQEVIREAVALVTPMANRKGIRLYHGMGE 776

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLA- 158
            V    +         +IL+NL          GG+V IS + ++       ++  G    
Sbjct: 777 GVCERCDVQADRTRLKQILINLATNGVKYNREGGEVEISCRLAEAGRARIEVRDTGIGIA 836

Query: 159 --RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  + F        + TI+   I    V  L       L  E  +         L 
Sbjct: 837 ALKQGDIFEPFHRLVEDGTIEGTGIGLSIVKRLVEAMGGTLGLESQEGQGSRFWFQLP 894


>gi|328470975|gb|EGF41886.1| sensor protein LuxQ [Vibrio parahaemolyticus 10329]
          Length = 858

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 52/242 (21%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      +       A   +++ H+I +PI  I    +LL +    +E    I +   
Sbjct: 466 KQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVEAEEQKNQIDVLRH 525

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102
           S    L  +     ++        +        D +   + +                 +
Sbjct: 526 SGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQL 585

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNL 157
               E         +IL NL   A    P G                +  +  +   G  
Sbjct: 586 DGNVEIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQFYGADNSVLVVEISDTGIG 645

Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +    V  L       +               
Sbjct: 646 IESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVT 705

Query: 213 LE 214
           L 
Sbjct: 706 LP 707


>gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1353

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 826  KEHQEEINQMKMRFFI--NISHELRTPLTLILTPLQEIINKISDRWTRNQLEYIQRNANR 883

Query: 63   RLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107
             L  +     Y  +           ++   L     +  D +A  K++  +        E
Sbjct: 884  LLHLVNQLMDYRRAELGVFELKAKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEDKE 943

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            ++        I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 944  ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|298528267|ref|ZP_07015671.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511919|gb|EFI35821.1| integral membrane sensor hybrid histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 809

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 61/239 (25%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H+I +P+  I   ++LL    ++    + + L+  SA 
Sbjct: 418 ARDKAETANRAK--SEFLANMSHEIRTPLNGITGMMQLLQTTRLDSNQKEYVDLALSSAS 475

Query: 62  IRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106
              + +                  +          V E F        +           
Sbjct: 476 RLTRLLSDILDLSRVEAGRMVILEEEFNVQELCRSVCELFRIQAGEKGIELEYTLDPSLP 535

Query: 107 -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFP 161
              +       +IL NL   +      G              +++ + ++   G+    P
Sbjct: 536 SRLMGDETRLQQILFNLVGNSLKFTREGRVRINWTLQKRGLDRHQVLITVTDTGSGI-AP 594

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           EK   +    V          +   +    V  L       +  +            L 
Sbjct: 595 EKLDDLFQPFVQEDGSSTRRHEGAGLGLSIVSRLVDLMHGTISVDSAPGEGTAFYIFLP 653


>gi|153837140|ref|ZP_01989807.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AQ3810]
 gi|260900476|ref|ZP_05908871.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
 gi|149749557|gb|EDM60303.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AQ3810]
 gi|308106963|gb|EFO44503.1| LuxQ, periplasmic family [Vibrio parahaemolyticus AQ4037]
          Length = 858

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 52/242 (21%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      +       A   +++ H+I +PI  I    +LL +    +E    I +   
Sbjct: 466 KQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVEAEEQKNQIDVLRH 525

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102
           S    L  +     ++        +        D +   + +                 +
Sbjct: 526 SGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENRL 585

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNL 157
               E         +IL NL   A    P G                +  +  +   G  
Sbjct: 586 DGNVEIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQFYGADNSVLVVEISDTGIG 645

Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +    V  L       +               
Sbjct: 646 IESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVT 705

Query: 213 LE 214
           L 
Sbjct: 706 LP 707


>gi|75909673|ref|YP_323969.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703398|gb|ABA23074.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 865

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 56/233 (24%), Gaps = 27/233 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            I   +    L  L      H++ +P+  I    +LL     +         +       
Sbjct: 488 EIANRIKDEFLAVL-----SHELRTPLNPILGWSKLLRSRQFDAATTDRALETIERNATL 542

Query: 64  LKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              +                      +  +     +  +    E      + V     G+
Sbjct: 543 QTQLIEDLLDVSRILQGKLSLNVCPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPELGQ 602

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---- 163
            +  +    +++ NL   A      GG V I ++   ++    +   G            
Sbjct: 603 VMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQIQVIDTGKGITPEFLPYVF 662

Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
            + +  DG          +    V  +   +   +      +      +  L 
Sbjct: 663 DYFRQADGTTTRKFGGLGLGLAIVRQVVELHGGTVQATSPGEGLGATFTVNLP 715


>gi|28901075|ref|NP_800730.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
 gi|260364054|ref|ZP_05776777.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
 gi|260879926|ref|ZP_05892281.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AN-5034]
 gi|260894602|ref|ZP_05903098.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus Peru-466]
 gi|50401015|sp|Q87GU5|LUXQ_VIBPA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|28809588|dbj|BAC62563.1| sensor protein LuxQ [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086409|gb|EFO36104.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus Peru-466]
 gi|308092294|gb|EFO41989.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus AN-5034]
 gi|308114073|gb|EFO51613.1| LuxQ, periplasmic family [Vibrio parahaemolyticus K5030]
          Length = 858

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 52/242 (21%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      +       A   +++ H+I +PI  I    +LL +    +E    I +   
Sbjct: 466 KQSNLARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVEAEEQKNQIDVLRH 525

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102
           S    L  +     ++        +        D +   + +                 +
Sbjct: 526 SGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFADTMRTLENIYRPICENKGVELVIENQL 585

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIFSLKINGNL 157
               E         +IL NL   A    P G                +  +  +   G  
Sbjct: 586 DGNVEIFTDQVRLNQILFNLVSNAVKFTPSGCVRLHAELEQFYGADNSVLVVEISDTGIG 645

Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +    V  L       +               
Sbjct: 646 IESDKLDEMFEPFVQEEATTTREYGGSGLGLTIVKNLVDMLDGDVQVRSQKGQGTTFVVT 705

Query: 213 LE 214
           L 
Sbjct: 706 LP 707


>gi|15614144|ref|NP_242447.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174198|dbj|BAB05300.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 594

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
           +++        L     + + H++ +PI  +    E + +   G + E  +L ++    +
Sbjct: 354 RDMTEERRHDKLRKDFIANVSHELRTPISMLQGYSEAIIDDIAGTDQEKKELAKIIYDES 413

Query: 61  II----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--- 107
           +             +        +     +    +        +A ++++ + +      
Sbjct: 414 LRMGRLVNELLDLARMEAGHIDLSYEEIEVKTFCERITRKFQGLAKEQQLTLDFIYRGDE 473

Query: 108 ---KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       ++L NL   A      GG V ++    +N     +   G      +  
Sbjct: 474 GKRIQVDPDRLEQVLTNLLSNAIRHTDPGGTVQLACHVMENGVKIDVTDTGTGIPEEDLP 533

Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +    V  +   +   +            +A   
Sbjct: 534 YVFERFYKADKARTRGRSGTGLGLAIVKNIVDAHSGEISVHSKQQEGTTFTAFFP 588


>gi|332981016|ref|YP_004462457.1| histidine kinase [Mahella australiensis 50-1 BON]
 gi|332698694|gb|AEE95635.1| histidine kinase [Mahella australiensis 50-1 BON]
          Length = 440

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 63/206 (30%), Gaps = 11/206 (5%)

Query: 19  CSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
            S + H++ + I  +   ++LL      +    ++++Q +   +       +  +     
Sbjct: 231 ASVLSHEVRNSISTLGAYIQLLQLDKLVDDERANKMLQEMARVNRMMQDFRRLTKYIKFK 290

Query: 74  TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHAS 129
             + +    L  +   ++         +       +I ++ +     ++ LNL   A  +
Sbjct: 291 FSNFNINAVLNKVIEFILPKAQLKGIEIITELDDREIYINGDMDAIEQVFLNLLENAIQA 350

Query: 130 LPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVIL 188
           + R    + I    S +     ++ +G      E    +      +      I   +   
Sbjct: 351 IERDRGHIWIKSMRSNDSVKIIIRDDGCGI-SDENKANLFKPFFTTKASGSGIGLAFCKD 409

Query: 189 LAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +   +  E  +      +  L 
Sbjct: 410 VLKAHGGDITAESQEGEGTSFTITLP 435


>gi|307289242|ref|ZP_07569198.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|306499951|gb|EFM69312.1| PAS domain S-box [Enterococcus faecalis TX0109]
 gi|315163856|gb|EFU07873.1| PAS domain S-box [Enterococcus faecalis TX1302]
          Length = 591

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|295105314|emb|CBL02858.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase. [Faecalibacterium
           prausnitzii SL3/3]
          Length = 592

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +       + +L A L   I HD+ +P+ +I  +        E LD          +  
Sbjct: 351 KEQAALQARNEELRANLLRTISHDLRTPLTSISGNASNLLSNGETLDTETRNKICTDIFD 410

Query: 55  LSSMS---------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +                             +D +I         +              
Sbjct: 411 DAQWLIGLVENLLSITRIEDGRMNLQISPQLMDEMIEEALHHVNRKSCEHTITTQYGDEI 470

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +R   ++++NL   A    P G  + IS     ++ +  +  NG       K  
Sbjct: 471 LLVNVDARLIMQVVVNLVDNAIKYTPVGSVIQISAYRKDHQVVVDVADNGPGIPDRAKAQ 530

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  +  S  +       +   +   L       +  V S  L 
Sbjct: 531 VFEMFYTGQSRIADSHRSLGLGLPLCRAILTAHGGTLTLRDNIPNGSVFSFALP 584


>gi|294776221|ref|ZP_06741706.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
 gi|294449904|gb|EFG18419.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
           PC510]
          Length = 757

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 58/224 (25%), Gaps = 20/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
              +L     + + H+I +P+ AI     LL          + E   +I  ++   +  +
Sbjct: 533 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 592

Query: 65  K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        M        +      +    QVI        +              
Sbjct: 593 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 652

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172
              +++ N    A     +G        D + +     ++  G      E    I +   
Sbjct: 653 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHIFVEDTGAGIPKEEL-QMIFERFY 711

Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    +      ++  +    +  +   +     +A+L 
Sbjct: 712 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755


>gi|269965582|ref|ZP_06179696.1| C4-dicarboxylate transport sensor protein [Vibrio alginolyticus
           40B]
 gi|269829807|gb|EEZ84042.1| C4-dicarboxylate transport sensor protein [Vibrio alginolyticus
           40B]
          Length = 601

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48
           +       + +  L  L  + + I H++ +P+ AI +  E     L +            
Sbjct: 357 LRVTQDELVQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLKKEKYERVEDNLTR 416

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103
           +  L    +  +     F +   G   +   L  +    + +        RV +      
Sbjct: 417 ISALTDRMANISQQLRSFAKKTSGDELAQSRLFPVIASVKELMKPAFKSGRVTLETNLPE 476

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E      +  ++L+NL   A  +L       +       +  +     +  NG    
Sbjct: 477 HDVEVQINIIQLEQVLVNLLTNAIEALKEQQDKQVELSVEHDEHTDLVWIHVDDNGPGLG 536

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + + ++   +       +      +L     +      S  L 
Sbjct: 537 SFSLSD-LCEPFLTTKLNGLGLGLSISQQILASMNGKLCAHNREQGGARFSLCLP 590


>gi|257419429|ref|ZP_05596423.1| predicted protein [Enterococcus faecalis T11]
 gi|257161257|gb|EEU91217.1| predicted protein [Enterococcus faecalis T11]
          Length = 576

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 346 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 405

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 406 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 465

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 466 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 524

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 525 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 570


>gi|254881711|ref|ZP_05254421.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|319643677|ref|ZP_07998294.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
 gi|254834504|gb|EET14813.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 4_3_47FAA]
 gi|317384707|gb|EFV65669.1| two-component system response regulator sensor kinase [Bacteroides
           sp. 3_1_40A]
          Length = 757

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 58/224 (25%), Gaps = 20/224 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
              +L     + + H+I +P+ AI     LL          + E   +I  ++   +  +
Sbjct: 533 EQAELKQSFLANMSHEIRTPLNAIVGFSNLLTTEKNISEEEKKEFASIIDNNTRLLLKLV 592

Query: 65  K-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                        M        +      +    QVI        +              
Sbjct: 593 NDVLELSRIESGNMSFHCEDCSAHHFAETVYQTHQVIILPPVEFIKEFPDEDVTIHIDRM 652

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV 172
              +++ N    A     +G        D + +     ++  G      E    I +   
Sbjct: 653 RLTQVITNFLGNAKKFTSQGHIKLGYFCDKEKKEIHIFVEDTGAGIPKEEL-QMIFERFY 711

Query: 173 EST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    +      ++  +    +  +   +     +A+L 
Sbjct: 712 KRNEFVQGVGLGLAISKVIVEKMNGHIDVQSEVNKGSRFTAVLP 755


>gi|288942183|ref|YP_003444423.1| histidine kinase [Allochromatium vinosum DSM 180]
 gi|288897555|gb|ADC63391.1| histidine kinase [Allochromatium vinosum DSM 180]
          Length = 368

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 27/232 (11%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIR 63
            S  L A+  L + I HD  + +GAI    ELL++           +  I+ +S  A   
Sbjct: 118 QSRRLEAVGTLAAGIAHDFNNILGAILGFSELLEDELAPESAGRHHLAYIQQASFRARDL 177

Query: 64  LKFMRLAFGY----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEKIDLSRERA 116
           +  M             V+ +  + +   ++   +    RV+ +        +    +  
Sbjct: 178 IARMLTFARDLADSPVPVEVVALVRETLALLRASLPAGARVEFTPAVDEAWVLAEPSQIQ 237

Query: 117 KILLNLFMVAHASL-----------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +I++NL + A  ++               +   +     +    S+  +G     PE   
Sbjct: 238 QIVMNLCINAADAIGQAQGRIEIGVEWVRRPEGTPAARADLVRLSVSDDGEGM-TPEVRE 296

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++ D    +        +    +  L  +   ++  E            L +
Sbjct: 297 RVFDPFFTTKAPGKGSGLGLSVIHGLVGKLGGQIRIESAPGRGSRFVIELPR 348


>gi|225175738|ref|ZP_03729731.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168662|gb|EEG77463.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 535

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 3   KNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIR 54
             +   L  S  L +   + + H++ +P+ ++    EL+ +           + ++ +  
Sbjct: 287 SQLNEKLGESNRLKSEFTATMTHELRTPLTSVVAFCELMLDEVSGPITPEQRENLLDIKT 346

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWT--- 105
            +    ++    + +A    GS+           +  + +     IA    + +      
Sbjct: 347 SAQQLMVLVNDILDMAKHEAGSLRIHKEKVDLNDVLRMVRRSMSAIAHQNGISLDVEKTT 406

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
                       ++++NL   A      GG++T+S     +  I S++  G        P
Sbjct: 407 LPFVYGDRDRIQQMVVNLVANAIKFTKDGGRITVSANGEGDFAIISVQDTGIGISPELLP 466

Query: 162 EKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   G+          +    V  LA     ++  +            L 
Sbjct: 467 HIFEKFRQGDHPKQRRKGTGLGLALVKTLAELQDGKVAVDSEVGEGSCFKIYLP 520


>gi|192360747|ref|YP_001981263.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
 gi|190686912|gb|ACE84590.1| two-component hybrid sensor and regulator [Cellvibrio japonicus
           Ueda107]
          Length = 758

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIRL 55
           AK    + S     +   S + H++ +P+ AI    EL      LD      + ++ +  
Sbjct: 391 AKRKAEDASQAK--SEFLSLMSHELRTPLQAIIGYTELVIEELKLDSDDRHVKDLERVIH 448

Query: 56  SSMSAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTG 106
           +    +  +   + +A   +GS+D  +    +  ++++            + +V      
Sbjct: 449 NGERLLRLINGVLDMAKIESGSMDLDLTEVRLSSLVDEARGTVAPLLEKSEIQVVQEVDD 508

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKF 164
            +     +  K+L  L  +   +     K  V+I       +   S+   G     PE+ 
Sbjct: 509 GESLPKADPEKLLHILINLLGNASKFAPKGVVSIKAYHRAEKIYISVADTGIGM-SPEQQ 567

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I D                 +       L       +  E            L 
Sbjct: 568 QHIFDPFRQADSGTTRKYQGSGLGLSITRQLCELMGGSIRVESELGKGSTFIVELP 623


>gi|190575870|ref|YP_001973715.1| putative histidine sensor kinase/response regulator fusion protein
           [Stenotrophomonas maltophilia K279a]
 gi|190013792|emb|CAQ47429.1| putative histidine sensor kinase/response regulator fusion protein
           [Stenotrophomonas maltophilia K279a]
          Length = 503

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 67/227 (29%), Gaps = 16/227 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMS 59
           +        ++ ++LL + + HD+ + +  +    +LL    +      +  +I      
Sbjct: 140 ETELMRAQRLESLSLLAAGLSHDLRNILQPLLIMPDLLKARTDDPQLHHLADVIAECGRR 199

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LS 112
                + M      +      I +  +   +   +  +    V    +  D         
Sbjct: 200 GHEMAESMLSFVRGSRKPSERIEIDGLFDAVALLLRSNVPDAVRLELQVQDEGLVVDANY 259

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFTQI 167
            E  +++LNL + A  ++P GG+++++   + +          +   G      +  + +
Sbjct: 260 TELQQVMLNLALNAIQAMPNGGRLSLTASHAGHRDGVDWMHIRVADEGIGM-DADTLSHL 318

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +  D   +       +       +               L 
Sbjct: 319 FNPFFTTKADGTGLGLISCKRIVEGAGGSIHVSSQPGQGTCFELRLP 365


>gi|91227735|ref|ZP_01261962.1| C4-dicarboxylate transport sensor protein [Vibrio alginolyticus
           12G01]
 gi|91188382|gb|EAS74677.1| C4-dicarboxylate transport sensor protein [Vibrio alginolyticus
           12G01]
          Length = 601

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48
           +       + +  L  L  + + I H++ +P+ AI +  E     L +            
Sbjct: 357 LRVTQDELVQAAKLAVLGQMSASISHELNNPLAAIRSFAENGKLFLKKEKYERVEDNLTR 416

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103
           +  L    +  +     F +   G   +   L  +    + +        RV +      
Sbjct: 417 ISALTDRMANISQQLRSFAKKTSGDELAQSRLFPVIASVKELMKPAFKSGRVTLETNLPK 476

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
              E      +  ++L+NL   A  +L       +       +  +     +  NG    
Sbjct: 477 HDVEVQINIIQLEQVLVNLLTNAIEALKEQQDKQVELSVEHDEHTDLVWIHVDDNGPGLG 536

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +  + + ++   +       +      +L     +      S  L 
Sbjct: 537 SFSLSD-LCEPFLTTKLNGLGLGLSISQQILASMNGKLCAHNREQGGARFSLCLP 590


>gi|148264748|ref|YP_001231454.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
 gi|146398248|gb|ABQ26881.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
          Length = 776

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 61/242 (25%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        M+ +  L   I HD  + + +I    E+  +         E++ ++  SS 
Sbjct: 379 ERQLSQAQRMEAIGTLAGGIAHDFNNNLASIITCTEMARDDVPEGSPMRELLDVVLKSSY 438

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------IDL 111
                +K +             + +  I       +       +  +             
Sbjct: 439 RGRNLVKQILTFSCQVEQERQPVQVERIISECLKLLRASFPTSIEISQNIAGRPGLVQAD 498

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS----------------KNENIFSLKING 155
             +  +I++NL   A  ++   G     +  +                      +++  G
Sbjct: 499 PTQMHQIVMNLCTNAGHAMQANGGKLDIMLVNIDLDTAAVSGFPDLPSGPYLRLTVQDTG 558

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +         +I D    +    +   +    V  +   +   +               L
Sbjct: 559 HGMDSA-TMERIFDPFFTTKGHGEGTGLGLSVVHGIVKNHGGAITVNSEPGKGTSFHVFL 617

Query: 214 EK 215
            +
Sbjct: 618 PR 619


>gi|291294435|ref|YP_003505833.1| histidine kinase [Meiothermus ruber DSM 1279]
 gi|290469394|gb|ADD26813.1| histidine kinase [Meiothermus ruber DSM 1279]
          Length = 423

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+ +   L +      + + I H++ +P+  +   LE + +    +E   +  +   + 
Sbjct: 189 MAEALE-RLEAERRA--MIADIAHELRTPLTVMQGRLEAIQDGVMPLEMSEVDRLHQQAR 245

Query: 59  SAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTG 106
                ++ +R                ++       +    +  +   +    R       
Sbjct: 246 LLSRLVEDLRTLSLADAGRLNLTLQPLNLAELADRMADTFQAALEAKRITLERRLPEGPV 305

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                S   A+++ NL   A    P GG + + V     +    +  +G           
Sbjct: 306 LVRADSDRLAQVIGNLLSNALGHTPAGGWIGLEVAAEAAQARLRVLDSGPGIPAEALNKV 365

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +    V  L   +K  +      +   V    L 
Sbjct: 366 FDRFYRAEASRSRATGGSGLGLSIVKALVELHKGTVTARNRPEGGAVFEVRLP 418


>gi|257052938|ref|YP_003130771.1| PAS/PAC sensor signal transduction histidine kinase [Halorhabdus
           utahensis DSM 12940]
 gi|256691701|gb|ACV12038.1| PAS/PAC sensor signal transduction histidine kinase [Halorhabdus
           utahensis DSM 12940]
          Length = 385

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 60/231 (25%), Gaps = 20/231 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
            + +  +  S+   A + S   HD+  P+  + + ++LL+           +E M+    
Sbjct: 145 REALEKSNESLREFAYIAS---HDLQEPLRMVSSYVDLLEREYGDQFDDEAEEYMEFAVN 201

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEK 108
            +      +  +          +    +          + +          + V      
Sbjct: 202 GAKRMKRMINSLLEYSRVHTQAEEFDEVDAAEVFESARQDLELLIADHSAEITVGDLPTA 261

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFT- 165
                +  ++  NL   +       G   I V  +       F++  NG      E+   
Sbjct: 262 SADRDQLGQVFQNLLKNSIEHAGEDGTPQIDVTVTDRPEAYEFAVADNGPGIPADEQDDV 321

Query: 166 -QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             I      +   +  I       +   +   +  E            + K
Sbjct: 322 FDIFRQGANAEAGNTGIGLAITRRIVQRHGGEIWIESEPGEGAAFKFTIPK 372


>gi|225574600|ref|ZP_03783210.1| hypothetical protein RUMHYD_02677 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038214|gb|EEG48460.1| hypothetical protein RUMHYD_02677 [Blautia hydrogenotrophica DSM
           10507]
          Length = 442

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     L +  +     + + H++ +P+ AI    EL++    E E           + 
Sbjct: 207 KKQHEDILQNARIRQEFTANVSHELKTPLTAISGYSELIENRMAEGEAAVRFAKEIHHSS 266

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------- 110
            RL  +     +   +DS+      E V    +A      +    EK             
Sbjct: 267 NRLLTLINDVIHLSELDSMQLEETKEMVDLYEVARSCVAMLQLQAEKHQVNLALLGVSCQ 326

Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                ++  +++ NL   A     +GG V ++V+ S  + I S+K  G      E   +I
Sbjct: 327 VLSTRQKMEELVYNLCDNAIRYNNKGGSVYVTVRPSGKKVILSVKDTGIGI-PKEHQERI 385

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +           +     +    V  +   +   +  +  +     +  +
Sbjct: 386 FERFYRVDKSRSKSTGGTGLGLAIVKHIVAGSNASMELDSEEGKGTEIRVI 436


>gi|5052340|gb|AAD38510.1|AF133262_2 histidine protein kinase-response regulator hybrid protein CvgSY
           [Pseudomonas syringae pv. syringae]
          Length = 671

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +++       S  + A+  L   I HD  + +  I  SLELL     +    +L R    
Sbjct: 282 LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGA 341

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 342 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 401

Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151
                +  ++    LNL + A  ++PRGG++TI   +                      +
Sbjct: 402 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWTDERGSQGRDLIPGQYLSLCV 461

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   ++ D    +        +    V     ++  ++           +
Sbjct: 462 SDTGTGM-SPEVINRVFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPGQGTNM 520

Query: 210 SALLEK 215
              L +
Sbjct: 521 CLYLPR 526


>gi|85715579|ref|ZP_01046559.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85697518|gb|EAQ35395.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 611

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 71/239 (29%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56
           +A+       +        + + H++ +P+ AI    E++ +            +  +L 
Sbjct: 338 LARTAAERADAAK--TRFLATMSHELRTPLNAIIGFSEMIVQEATLPLDATRRKEYAQLI 395

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------Q 101
           + S    L  +      +        +        + +     +                
Sbjct: 396 NDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLNGCNLLALKARDNGIELVTRV 455

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                + I   R   +I+LNL   A     RGG+VTIS +      +  +  +G      
Sbjct: 456 PENLPQMIGDPRAFRQIVLNLVSNAIKFTERGGRVTISARVEGARMVLRVMDDGVGIAQE 515

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D         +   +   +    V  L   ++  +  +   +    ++ +L 
Sbjct: 516 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKNLVELHRGEIDVQSKVEEGTTVTVMLP 573


>gi|325972366|ref|YP_004248557.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
 gi|324027604|gb|ADY14363.1| Hpt sensor hybrid histidine kinase [Spirochaeta sp. Buddy]
          Length = 935

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 56/225 (24%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   +R+ H+I +P+  I     LL++  ++   M+ ++  S +       +     ++ 
Sbjct: 319 SRFLARVSHEIRTPLNGIRGMSYLLEKTSLDANQMRYVKTISGATQTMQSIINDILEFSR 378

Query: 76  SVD----------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
             +                      +   + +  +              +      A+IL
Sbjct: 379 LDEDRIILENIPFALDDVLENCISIESYLIQQKGLHFRLNQPDDVPQHLVGDPTRLAQIL 438

Query: 120 LNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQIVDGN---- 171
           +NL   A      G                   F +K  G      +    +        
Sbjct: 439 INLLNNAVKFTEAGSIDLTVQVQTLAEQSCSLSFEVKDTGIGMNEQQ-MENLFKPFVQAN 497

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +        +    V  L  +    L            +A + 
Sbjct: 498 ASIHRKYGGSGLGLSIVKALVEKMGGTLTVTSEMGKGSAFTATIP 542


>gi|304392331|ref|ZP_07374272.1| two-component sensor/response regulator hybrid [Ahrensia sp.
           R2A130]
 gi|303295435|gb|EFL89794.1| two-component sensor/response regulator hybrid [Ahrensia sp.
           R2A130]
          Length = 708

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/221 (9%), Positives = 56/221 (25%), Gaps = 23/221 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + I H++ +P+  +    +LL    ++      + +   S    L  +        
Sbjct: 242 SRFLATISHEVRTPLNGVMGVAQLLARTPLDATQRDHLSILKTSGDTLLALIEDLLDTAR 301

Query: 76  SVD----------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                                +      +     + +   +  +     +       ++L
Sbjct: 302 MEQGDLSIQTEPVKLEQLLEGVAAMMASRAAAKSLPISTYIDPTLPASILADGGRLRQVL 361

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A     +G     + + S +E    +   G      ++  +I    V       
Sbjct: 362 VNLLGNALKFTDQGSVSLCAHRHSIDELCLVVSDTGPGIADKDR-DRIFQPFVQTDDGST 420

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +       +       +      D   V +  L 
Sbjct: 421 RAHNGAGLGLAISRHIVVRMGGDISVSTGKDSGSVFTVTLP 461


>gi|229019212|ref|ZP_04176044.1| hypothetical protein bcere0030_37220 [Bacillus cereus AH1273]
 gi|229025457|ref|ZP_04181869.1| hypothetical protein bcere0029_37570 [Bacillus cereus AH1272]
 gi|228735849|gb|EEL86432.1| hypothetical protein bcere0029_37570 [Bacillus cereus AH1272]
 gi|228742100|gb|EEL92268.1| hypothetical protein bcere0030_37220 [Bacillus cereus AH1273]
          Length = 424

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 67/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+ T++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIVIRVKDSGVGM-TKEQLTRLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|298531136|ref|ZP_07018537.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509159|gb|EFI33064.1| PAS/PAC sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 840

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 60/238 (25%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H+I +PI  I   ++LL+   ++ E  Q +++   SA 
Sbjct: 402 ARDEAEAANRAK--SEFLANMSHEIRTPINGIMGMMQLLEATSLDVEQAQYVQMGLTSAR 459

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
              + +                     D       + ++            +  +     
Sbjct: 460 RLTRLLSDILDLSRIEAGQMEIRQEEFDVRKLCFSVTELFMVTCREKNIALEYSLDPQLP 519

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFP 161
              +       +IL NL   A     +G                + + ++   G      
Sbjct: 520 EILLGDETRLQQILFNLVGNALKFTEQGRVQVNWHLMKRRERDIQVLLTVSDTGIGMTPH 579

Query: 162 EKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                   +    V  L       +  E + D     + LL 
Sbjct: 580 RAGDLFKPFVQAENAYTRKYQGAGLGLSIVKRLVELMHGEVTVESMPDAGSTFNILLP 637


>gi|170748811|ref|YP_001755071.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655333|gb|ACB24388.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 676

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           ++    L   +  ++      + + H++ +P+  I    +L+    +  E    +     
Sbjct: 158 RSRDAALERAEAASVAKSRFLATVSHEMRTPLNGILGMADLVLGTELNPEQRTYVEAVRT 217

Query: 59  SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQV 102
           S           +  +    G +D      D+  +             +  I +   V  
Sbjct: 218 SGQALLGLIDGVLDFSRIEAGRLDLAAEPFDLPALSEGVVELLAPRAQDKGIEIALDVAE 277

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLAR 159
            +    +  +    +IL+NL   A     RGG       +   +  E + ++   G    
Sbjct: 278 DFPAAVLGDADRVRQILINLAGNAIKFTERGGVGVSLGFARAGTGGEVVLAVADTGPGIP 337

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         DG+   + +   +       L      R+  +           LL 
Sbjct: 338 EERLPILFEEFEQGDGSASRSHEGTGLGLAITRRLVTRMGGRIEADSRLGRGSTFRVLLP 397


>gi|83310944|ref|YP_421208.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945785|dbj|BAE50649.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 525

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 54/224 (24%), Gaps = 14/224 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           MA         +       + + H+  +P+  I  ++ELL E          +  +  + 
Sbjct: 304 MAATQERRADYIR---DFAAHVSHEFKTPLATITGTVELLREHLTDMTPEDRERFLDNLE 360

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDL 111
             +      ++ +              G      VI            +           
Sbjct: 361 SEASRLSRLVQRLLDLARADVMPAGQDGCCRPLAVIAGLAERAGLTIEIMADGDMMVRMG 420

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +     +  NL   A      G +VT++++   +E +  L  +G                
Sbjct: 421 AEAMETVFGNLLDNACRHGGPGSRVTLALRRDDDEVVLILADDGPGISPANAGRVFTPFF 480

Query: 172 VE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V  L   +   +     +         L 
Sbjct: 481 TTARKEGGTGLGLSIVRSLVTAHGGAIALRPSE-RGARFEIRLP 523


>gi|307634952|gb|ADI84766.2| sensor histidine kinase response regulator, HAMP and Hpt
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 810

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           ++K      S+    +   + + H+I +P+  +   + LL E  ++ +  +   +   S 
Sbjct: 289 LSKAKEAADSASQSKSRFLANVSHEIRTPMNGVLGMVSLLLETDLQAKQREYAEIIRSSG 348

Query: 61  IIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            + ++                 M         V   +     E+  +  + ++  +    
Sbjct: 349 ELLMQVINDLLDFSRIESGKLKMEQLPFAARRVIEEMATIYGERARQKGVFLEYSMAGEV 408

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFP 161
               +       ++L NL   A     +G          +         +   G      
Sbjct: 409 PDRLLGDRHRLRQVLGNLLDNAVKFTLKGTITLTVRGSVEGGVCRLSCIVSDTGIGI-PQ 467

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +   ++                   +    V  L       +  +       V    
Sbjct: 468 DMLPRLFHPFTQADDSNTRRFGGTGLGLAIVRHLVELMGGTVSCDSEPGCGSVFRFT 524


>gi|307299747|ref|ZP_07579540.1| integral membrane sensor signal transduction histidine kinase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914613|gb|EFN45006.1| integral membrane sensor signal transduction histidine kinase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 418

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSS-----MDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVM 50
           +++ +   + S       + A + S I H++ +P+ ++    EL+ +         +E +
Sbjct: 176 LSRRLEKTMESVDSERDKMRAFI-SFISHELKTPLASLKTMNELMLDGKNMEREQIEEFL 234

Query: 51  QLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                        +             +R +F      +    +      I     ++  
Sbjct: 235 GRSGEDIERMEWLIGDVLNIARIESGAIRFSFRKADLAELARDIMRNYIEIARRKKIEIS 294

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           +    +       +   + + NL   A    P GG V++S+  S+     S+   G    
Sbjct: 295 LNTESSAIVFCDEKWITQAIGNLLKNAIDYSPEGGSVSVSISGSETYAYISVSDEGPGIP 354

Query: 160 FPEKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           S+         +       +   ++  +  +   +     +  L 
Sbjct: 355 QEDSSKIFQSFYRGSSAGRSKKGSGLGLSLAKAIIERHQGDIKLKSSTERGSTFTIELP 413


>gi|295705734|ref|YP_003598809.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
 gi|294803393|gb|ADF40459.1| two-component sensor histidine kinase/response regulator [Bacillus
           megaterium DSM 319]
          Length = 995

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 23/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK     ++     +   S++ H++ +P+  I    +LL+     +E         +S  
Sbjct: 258 AKEEAEKVNMAK--SSFLSKMSHELRTPLNGILGFAQLLEMDESLNEQQHDFVQEILSGG 315

Query: 62  IRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             L  +         ++               +    I  V       +  +       +
Sbjct: 316 SHLLSLINDILDVSRIETGNLKISVEEVHLLTVIKECINIVQPLAKKKNISIYSQLDQWE 375

Query: 109 IDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +         +ILLNL   A       GKV +  +  +N+    +   G      E +
Sbjct: 376 DMMVLADPIRLKQILLNLLDNAIKYNQENGKVIVFCRLQENKQYIHIVDTGVGFSVEE-Y 434

Query: 165 TQIVDGNV---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T++         +  +   I    V  L H     +               L 
Sbjct: 435 TKVFVPFYRIENTKEEGTGIGLSLVKQLVHLMGGDINVTSNKGTGSEFCFSLP 487


>gi|317128536|ref|YP_004094818.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473484|gb|ADU30087.1| multi-sensor signal transduction histidine kinase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 597

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           +       L    L     + + H++ +PI  +    E + +        + E+ Q+I  
Sbjct: 356 LRDMTEERLHD-KLRKDFIANVSHELRTPISMLQGYSEAIIDGIASSEEEKTELAQIIYD 414

Query: 56  SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104
            S+     +  +   A    G +   +         +  +   + +              
Sbjct: 415 ESLRMGRLVNELLDLARMEAGHIQLNVETISFTDFTKRVLRKFQGIAKEHGIKLSGDIEE 474

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        ++L NL   A    P GG+VT+ ++        +++  G      + 
Sbjct: 475 NIQYVYADEDRIEQVLTNLIDNAIRHTPEGGEVTLQMEVLDQGVKVNIQDTGIGISEEDL 534

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +    V  +   +  ++      +     S  L 
Sbjct: 535 PFVFERFYKADKARTRGRAGTGLGLAIVKNIVEAHHGKVSVHSKLNEGTTFSFFLP 590


>gi|261419764|ref|YP_003253446.1| histidine kinase [Geobacillus sp. Y412MC61]
 gi|319766580|ref|YP_004132081.1| histidine kinase [Geobacillus sp. Y412MC52]
 gi|261376221|gb|ACX78964.1| histidine kinase [Geobacillus sp. Y412MC61]
 gi|317111446|gb|ADU93938.1| histidine kinase [Geobacillus sp. Y412MC52]
          Length = 367

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 60/217 (27%), Gaps = 14/217 (6%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             + L+  + S   H+  +P+ AI   ++LL         + +I         R+     
Sbjct: 152 DRLTLLGQMSSSFVHEFRNPLTAIIGFIQLLKFEHPHLPYLDIIDHELQQLKFRISQFLH 211

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                              L  + +          VD  V +  +        +  ++L+
Sbjct: 212 ASRKEIVESEKETFSLRQLLEEIIEFLYATIVDSDVDLSVAIDESIHIFAYKDQLRQVLV 271

Query: 121 NLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           N+ + +  ++    K        +      I  +  NG      +    I +    +   
Sbjct: 272 NILLNSIEAVKEREKPRRINIAARCQDGSIIIEIANNGPSI-PADIVETIFEPFFTTKKL 330

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I  Y    +  ++   +     +D     S  L 
Sbjct: 331 GTGIGLYICKKVIEDHGGDIRCLSDED-MTTFSIRLP 366


>gi|218531838|ref|YP_002422654.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218524141|gb|ACK84726.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 684

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53
           A+++      ++++  L   + HD  + +  I +S +LL    + ++             
Sbjct: 299 AQDVLRQSQKLEVIGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAEDRRSRYIEAISNTV 358

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++      L F R          +   +  + +++         V          ++ 
Sbjct: 359 DRAAKLTGQLLAFARRQTLKPKVFAACDSVRSLSEMLGTLTGSRITVVTELPENACFVNA 418

Query: 114 ERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNL 157
           + ++    L+N+ + A  ++              +   V             S+   G+ 
Sbjct: 419 DPSQFDTALVNMAVNARDAMEGEGQLTIRVEPVEQMPSVRAHPAVQGPFVAVSISDTGSG 478

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +I +    +        +    V   A ++   ++ E         +  L +
Sbjct: 479 I-AKDVVERIFEPFFTTKAVGQGTGLGLSQVFGFAKQSHGEVVVESEVGRGTTFTLYLPR 537


>gi|13641117|gb|AAK31604.1| RtpA-like protein [Pseudomonas synxantha]
          Length = 848

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 172 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELSPRQLDYLGTIEKSA 229

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
                 +     ++              +    L D   +        +      V    
Sbjct: 230 DNLXGIINEIXDFSKIEAGKLVLDSVPFNLRDLLQDTLTIFAPAAHAKQLELVSLVYRDT 289

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
               +       +IL NL   A      G          Q+   +   S++  G      
Sbjct: 290 PLALVGDPLRLKQILTNLISNAIKFTREGTSSPGDGRDEQEDSVQLRISVQDTGIGLSNQ 349

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLE 214
           +        +              +       L  +    +  +           S  L 
Sbjct: 350 DVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLP 409

Query: 215 K 215
           K
Sbjct: 410 K 410


>gi|27380599|ref|NP_772128.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
 gi|27353764|dbj|BAC50753.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum
           USDA 110]
          Length = 907

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 65/240 (27%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLI 53
            +        MD +  L   + HD  + +  I  ++E++ E   +               
Sbjct: 524 TEERLRQSQKMDAIGQLTGGVAHDFNNVLTVITGTIEIIQEGLADRPQFAAIAQLIDDAA 583

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
              +      L F R        +D    + +  ++++  +     +      +      
Sbjct: 584 ARGAEITSQLLTFARRQPLEPREIDVNALVVETAKLLKPILGEHIEIVTRLADDAWSAMA 643

Query: 114 ERAKILLNLFM---VAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNL 157
           + +++   +      A  ++P               G  +          + ++   G+ 
Sbjct: 644 DPSQLSSAIVNLAVNARDAMPDGGRLTLETANRELDGVRSDGDIMRGAFVMIAVTDTGHG 703

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   ++ +    +        +    V   A +    +  E  +    V+   L +
Sbjct: 704 I-PADIRERVFEPFFTTKGVGRGTGLGLSMVYGFARQTGGTVAIESEEGQGTVMRLFLPR 762


>gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
 gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. D22]
          Length = 1353

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 826  KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
             L  +     Y  +   +  L   ++     I  +          K              
Sbjct: 884  LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 943

Query: 116  --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 944  ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain./Two component regulator
           propeller./Bacterial regulatory helix-turn-helix
           proteins, AraC family./Y_Y_Y domain. [Bacteroides
           xylanisolvens XB1A]
          Length = 1298

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 771 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 828

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
            L  +     Y  +   +  L   ++     I  +          K              
Sbjct: 829 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 888

Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                     I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 889 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 947

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 948 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 996


>gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 1298

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 771 KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 828

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
            L  +     Y  +   +  L   ++     I  +          K              
Sbjct: 829 LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 888

Query: 116 --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                     I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 889 ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 947

Query: 168 VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 948 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 996


>gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
 gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides ovatus SD CMC 3f]
          Length = 1353

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 826  KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
             L  +     Y  +   +  L   ++     I  +          K              
Sbjct: 884  LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 943

Query: 116  --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 944  ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|258591885|emb|CBE68188.1| putative Sensor protein yycG [NC10 bacterium 'Dutch sediment']
          Length = 610

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 61/240 (25%), Gaps = 33/240 (13%)

Query: 8   NLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
            L  ++       + + H++ +P+ ++   LE L     ++       +++I   +    
Sbjct: 362 ELRRLEAARTEFVANVSHELRTPLTSVRGYLETLLEGALEDREHARPFLEVIHKHTERLG 421

Query: 62  IRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKI 109
             L  +             +         + ++  +            +          +
Sbjct: 422 RLLDDLLDLSNLELGKVTLHRQPTVLAEVVHNVMAIYGPQATKQKIELRTELPDDLPRVM 481

Query: 110 DLSRERAKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLAR 159
                 A++L+NL         +G               ++    +    +++  G    
Sbjct: 482 ADRDRIAQVLINLLDNGFKFTQKGGAVRVSASLAHPTPDTLHPIVDFVEVAVQDTGIGIP 541

Query: 160 FPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +           +    +    V  L   +   LL E   +    +   L 
Sbjct: 542 SQDLPRITERFYRVDRARSREMGGTGLGLAIVKHLVKAHGGELLIESELNKGTTVRFTLP 601


>gi|253681304|ref|ZP_04862102.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
 gi|253562542|gb|EES91993.1| sensory transduction histidine kinase [Clostridium botulinum D str.
           1873]
          Length = 469

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 75/235 (31%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           MAK++       +   +  S + H++ SPI +I   +  + +       E+  + +    
Sbjct: 236 MAKSLE---EVEENRRVFISNVSHELRSPITSIKGFIGGILDGVIPKEKENYYLSVAYEE 292

Query: 57  SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                  +  +                     + +       + +     ++  V +   
Sbjct: 293 IQRLTRLINDLLDLSSIEAGKFVLNVKEEDINEIIRLSIIKFETVIKSKKINVEVWLDEE 352

Query: 106 GEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              + + R+   +++ NL   A       G + I  +    +   S+  +G      +  
Sbjct: 353 RLSVLVDRDKIIQVITNLIDNAIKYGKEEGNIEIRTKVKGQKVFVSVYNDGPNISEEDGK 412

Query: 163 -KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +   G+   T+  S  +    V  +  ++   +  E  ++  V  +  L+K
Sbjct: 413 YIWDRFYKGDKSRTLKVSTGLGLSIVRRIVTQHGGDVWFENRENKGVKFTFTLKK 467


>gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
 gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. D1]
 gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides
            sp. 2_1_22]
          Length = 1353

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 826  KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
             L  +     Y  +   +  L   ++     I  +          K              
Sbjct: 884  LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 943

Query: 116  --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 944  ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|227358257|ref|ZP_03842598.1| histidine kinase [Proteus mirabilis ATCC 29906]
 gi|227161593|gb|EEI46630.1| histidine kinase [Proteus mirabilis ATCC 29906]
          Length = 778

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E +  ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELSPEQLNYLKTIHVSAITLGNIFNDVIEMDKIERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            I L +      +FI+  + +                Q +   +         +IL NL 
Sbjct: 348 KIQLDNQPIDFTEFISDLENLSGLLVQPKGLKFTLEAQETLPHKITTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A      G       Q++ ++  F +K +G      E                  +  
Sbjct: 408 GNAVKFTQEGEIKVRIWQEAPDKLFFEVKDSGIGIPQGELEKIFAMYYQVNDSQGGRSAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +  E    H  + +  +
Sbjct: 468 GTGIGLAVSKRLAQHMGGDIHVESELGHGSIFTLSI 503


>gi|197287481|ref|YP_002153353.1| aerobic respiration control sensor protein ArcB [Proteus mirabilis
           HI4320]
 gi|194684968|emb|CAR47176.1| aerobic respiration control sensor/response regulatory protein
           [Proteus mirabilis HI4320]
          Length = 778

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 61/216 (28%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E +  ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELSPEQLNYLKTIHVSAITLGNIFNDVIEMDKIERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            I L +      +FI+  + +                Q +   +         +IL NL 
Sbjct: 348 KIQLDNQPIDFTEFISDLENLSGLLVQPKGLKFTLEAQETLPHKITTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A      G       Q++ ++  F +K +G      E                  +  
Sbjct: 408 GNAVKFTQEGEIKVRIWQEAPDKLFFEVKDSGIGIPQGELEKIFAMYYQVNDSQGGRSAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +  E    H  + +  +
Sbjct: 468 GTGIGLAVSKRLAQHMGGDIHVESELGHGSIFTLSI 503


>gi|182415836|ref|YP_001820902.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177843050|gb|ACB77302.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 846

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 32/244 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53
           M + +      ++ + LL   I HD  + +  I     L       +  +          
Sbjct: 465 MERRL-LESQKLESLGLLAGGIAHDFNNILTGILGHANLARCAPASETELVEHLRQIEAG 523

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              ++      L F       T +VD    + D   +++  + V  R+Q++   E + ++
Sbjct: 524 AARAAELCQQMLAFSGRGRFVTETVDLNRIVRDTLPLLQGSLPVRARLQLALAPEPVLVT 583

Query: 113 RERAKILLNLFMVAH----------------------ASLPRGGKVTISVQDSKNENIFS 150
            +  +       +                         +    G    +   + +     
Sbjct: 584 GDATQFRQIAMNLILNAGEALPPAGGQVAVRSGRRAFDATFLAGVRGQNNLAAGDYVFLE 643

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +   G     PE   +I D    +      +    V+ +   +   L  +       + +
Sbjct: 644 VHDTGCGM-TPETIAKIFDPFFTTKFTGRGLGLAAVLGIVRGHAGGLRVDSEPGKGSIFT 702

Query: 211 ALLE 214
            LL 
Sbjct: 703 LLLP 706


>gi|163740009|ref|ZP_02147414.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
 gi|161386754|gb|EDQ11118.1| multi-sensor hybrid histidine kinase [Phaeobacter gallaeciensis
           BS107]
          Length = 879

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L+     A L + + H++ +P+  +  ++ELL+   +  +    +     S 
Sbjct: 335 LTRTRDEALAGERAKADLLTVMSHEMRTPLTGVLGAVELLEGTALSSDQHDYVSAIRTSG 394

Query: 61  IIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +                        D +  L D  Q        D  +  S   
Sbjct: 395 DRLMAHVNDVLQLSQLETSVDYEHQRIFNLSDLVQELIDAHQSTARRGRNDLSLHCSLGA 454

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPE 162
              D+      +   L  +   +L         V +      +    S+   G      +
Sbjct: 455 SGGDVLGRPVALKKVLVNLIENALQFTTDGAVSVDVQRLGQSDTVEISIADTGAGIAERD 514

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +           + +   +       +       +  E       + +  L 
Sbjct: 515 L-DRIFEDFIRLDASYARSSEGTGLGLAITRRIVVALGGDISCESELGEGSLFTISLP 571


>gi|158339430|ref|YP_001520607.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158309671|gb|ABW31288.1| two-component hybrid sensor and regulator, putative [Acaryochloris
            marina MBIC11017]
          Length = 1660

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 58/220 (26%), Gaps = 25/220 (11%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIRLKFMRLAFGYT 74
            + + H++ +P+  I    ++L          Q     + +       +    + +A    
Sbjct: 1209 ANMSHELRTPLNGILGYAQVLKRDHHLLPCHQQALNTIHQSGEHLLTLIDDILDIAKIEA 1268

Query: 75   GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------------AKILLNL 122
              ++  I       ++E  + + +        + +    +              +ILLNL
Sbjct: 1269 RKLELNISDIHFPSLLESIVNLFQMRAQEKNIQFVYRPADSLPQGIQSDKKCLRQILLNL 1328

Query: 123  FMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD----GNVES 174
               A     +G              + +  F++   G      +           G++  
Sbjct: 1329 LSNAIKFTDQGQVTLSVEIEQHTSQQIKLKFTITDTGIGISPDQIEQIFHPFEQVGDLNR 1388

Query: 175  TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +       L       L  E  ++        + 
Sbjct: 1389 RAEGTGLGLSISRQLVELMGGTLQAESCEEKGSTFWFSIP 1428


>gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
 gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
 gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides xylanisolvens SD CC 1b]
          Length = 1353

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     ++ M +   +   I H++ +P+  I   L+ +     +      +     +A  
Sbjct: 826  KEHQEEINQMKMRFFI--NISHELRTPLTLILAPLQEIINKISDRWTRNQLEYIQRNANR 883

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
             L  +     Y  +   +  L   ++     I  +          K              
Sbjct: 884  LLHLVNQLMDYRRAELGVFELKVKKENAHQLIQDNFLFYDKLARHKKITYTLHSELEEKE 943

Query: 116  --------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      I+ NL   A      G  +T+++++  N  +  +   G       K  +I
Sbjct: 944  ELFDPNYLELIVNNLLSNAFKYTESGQSITVTLKEENNWLVLQVSDTGIGIPIN-KQGKI 1002

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  L   +  R+  +  +      S  L 
Sbjct: 1003 FERFYQIESEHVGSGIGLSLVQRLVELHHGRIELDSEEGKGSTFSVYLP 1051


>gi|109898070|ref|YP_661325.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700351|gb|ABG40271.1| PAS/PAC sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 660

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 57/228 (25%), Gaps = 22/228 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIRLSSMSAI 61
               L     + + H++ +P+  I N  E+L  +   D  +        + +R  +    
Sbjct: 300 EQDKLKDEFLAMLAHELRNPLAPIRNVSEILLNMEQRDPKLKNIGDILARQVRHMTHLMD 359

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113
             L   R++              DI  +  +        +                  S 
Sbjct: 360 DLLDVSRISQNLINLQLEPTNFSDIVDLTIESQQSALDTKQHTLEVVDTPQDLYVNGDST 419

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
              + L N+   A    P GG +T+            +  NG       +          
Sbjct: 420 RLVQSLSNVLNNAIKYTPEGGHITLECVADIETVQVIISDNGYGICPSMQGKVFELFAQV 479

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
               + +     I    V  L   +   +        H    +  L +
Sbjct: 480 QQTLDRSQGGLGIGLNIVQRLVQMHGGSISVSSQGLGHGSCFTITLPR 527


>gi|254508393|ref|ZP_05120514.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
 gi|219548706|gb|EED25710.1| two-component hybrid sensor and regulator [Vibrio parahaemolyticus
            16]
          Length = 1594

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/239 (7%), Positives = 61/239 (25%), Gaps = 26/239 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +       + +  +   + + H+I +P+  +   ++LL E  +  + + ++     S+
Sbjct: 952  LERETLSAKQANEAKSRFLATMSHEIRTPMNGVIGMVDLLRETNLSRDQVNMVSTIRDSS 1011

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEK 108
               L+ +     ++      + L   +             +  +    D  + +      
Sbjct: 1012 FSLLEIINDILDFSKIESGQMELDLTDVNILNLVEKTLDALWVNAHQKDVGLYLEVEDNL 1071

Query: 109  ID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFP 161
             +          ++LLNL   A        +                 +++ NG      
Sbjct: 1072 PESLLLDPVRTRQVLLNLLGNAIKFTASHEQQGYVKVYVGYTEGELRIAVEDNGVGMTQD 1131

Query: 162  EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++                   +               +       H    +  + 
Sbjct: 1132 QL-ERLFKPFTQADTSTTRKFGGTGLGLSISKSFVELMGGEIRVTSKHHHGSRFTFTIP 1189


>gi|195977457|ref|YP_002122701.1| two component system histidine kinase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195974162|gb|ACG61688.1| two component system histidine kinase [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 336

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK 65
            S    +++ +++ HDI +P+ +I  ++E + +       E   +  I   +      ++
Sbjct: 103 ESEHEKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPREEERHYLNTISRQTNRLNQLVE 162

Query: 66  FMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            + +                      LI +    Q+  +       ++V+    KI+   
Sbjct: 163 ELHMVSLNDQKQDDKQQLQIIYLEKLLIDMLSEFQLTLEQENRSVHIEVAKEVVKINSRY 222

Query: 114 ER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
           +  ++I+LNL   A         +TI     +      +   G   +  +    F ++  
Sbjct: 223 DALSRIMLNLVSNALKYSKANTALTIHAYQQEQSIRIDVIDQGQGIKKEDLPLIFKRLYR 282

Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      H +       LA +    +  E         S LL 
Sbjct: 283 VEASRNMKTGGHGLGLSIARQLARQLGGDIAVESQLGKGSCFSLLLP 329


>gi|171689430|ref|XP_001909655.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944677|emb|CAP70788.1| unnamed protein product [Podospora anserina S mat+]
          Length = 2424

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/245 (8%), Positives = 62/245 (25%), Gaps = 33/245 (13%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------ 56
            +N+     +    ++  + + H++ +P+  +  + ELL + G+  E M++          
Sbjct: 1931 RNVKLAEEATKAKSIFLANVSHELRTPLNGVIGNSELLRDSGLNREQMEMADSIRVSADL 1990

Query: 57   ----------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                + +       +   +         E     + ++      
Sbjct: 1991 LLTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNREKTSKKNVKIVQDINL 2050

Query: 107  EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLAR 159
              + +  +     ++L NL   +      G     +  D +        F +K  G    
Sbjct: 2051 PPMLIYGDPIRLHQVLGNLIGNSLKFTEDGSITIGARIDEETPDKATLTFWVKDTGIGIS 2110

Query: 160  FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--LS 210
                   +                   +       L     +  +  E  ++       +
Sbjct: 2111 QQHL-ENLFQPFSQADASTARKYGGSGLGLSICKSLIETMMEGTIQLESEENVGTTAWFT 2169

Query: 211  ALLEK 215
               EK
Sbjct: 2170 VTFEK 2174


>gi|196038847|ref|ZP_03106155.1| sporulation kinase B [Bacillus cereus NVH0597-99]
 gi|196030570|gb|EDX69169.1| sporulation kinase B [Bacillus cereus NVH0597-99]
          Length = 424

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 66/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+ T++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLTRLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|110833833|ref|YP_692692.1| phosphotransferase-histidine kinase family protein [Alcanivorax
           borkumensis SK2]
 gi|110646944|emb|CAL16420.1| phosphotransferase-histidinkinase, family protein [Alcanivorax
           borkumensis SK2]
          Length = 867

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 26/237 (10%)

Query: 4   NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +   N  +     +L  +R+ H+I +P+  +    ELL E        + I L   +   
Sbjct: 358 SRAINARAESQAKSLFLARMSHEIRTPLNGVIGLAELLRETDPSPRQQEYISLIDSAGRT 417

Query: 63  RLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +     +               D  + L +  Q+     + +  + +     +   
Sbjct: 418 LTALINDVLDFAKIEAGKLELVEEHFDLPVLLAECVQMFNLPASDNGTLVILDVDPQTPS 477

Query: 112 S-----RERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPE 162
                     +IL+NL   A      G  V                FS+   G      E
Sbjct: 478 DVVGDAIRLRQILINLVGNAVKFTRNGRVVLSLVCRRQYGEAPLYTFSVADTGIGLSQVE 537

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +        +       L       +            S  ++
Sbjct: 538 QAQLFQRFTQASANTAQRYGGTGLGLSISRELVELMGGEIHVHSAPGQGSRFSFSIQ 594


>gi|89092215|ref|ZP_01165169.1| two-component sensor PhoR [Oceanospirillum sp. MED92]
 gi|89083303|gb|EAR62521.1| two-component sensor PhoR [Oceanospirillum sp. MED92]
          Length = 468

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 59/232 (25%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+++   +          +   H++ +P+  I   LE   +  +   +++ +      A 
Sbjct: 192 ARDVSRLMRLEQTRQDFVANASHELRTPLTVIRGYLETFLDQELPRPLLRGLGSMQQQAR 251

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                                           +  + +  + + +      ++ +    +
Sbjct: 252 RMENLVSDLLLLSRLEASHQISDEQPIQLQSVVNHIMEGAEQLGNEKGHRFKLDIDPDHD 311

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKF 164
                 E      NL   A    P  G +++          FS+K NG        P   
Sbjct: 312 LCGQEIELHSAFSNLVYNAVRYTPSEGDISVKWWVDDQGAHFSVKDNGPGIESIHLPRLT 371

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +       +    V  +   +  +L  +         +    
Sbjct: 372 ERFYRVDESRSSASGGTGLGLAIVKHVLARHNGQLTIKSKIGKGSTFACHFP 423


>gi|125974329|ref|YP_001038239.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|256003451|ref|ZP_05428441.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|125714554|gb|ABN53046.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|255992475|gb|EEU02567.1| Hpt sensor hybrid histidine kinase [Clostridium thermocellum DSM
           2360]
 gi|316941476|gb|ADU75510.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
           1313]
          Length = 932

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H+I +PI +I     LL    +  +  + +    ++A 
Sbjct: 328 ARDEADKANRAK--SEFLASMSHEIRTPINSIIGYQYLLKNSVLSPKQREYVENIGLAAK 385

Query: 62  IRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L  +     ++                 D L  L  I  +      ++ R++V     
Sbjct: 386 NLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVP 445

Query: 108 KI--DLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
           +          ++++NL                   +   +      FS+   G      
Sbjct: 446 RFLKGDITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDE 505

Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +    F     G+           +       L    K  +  E         S  L
Sbjct: 506 QKKLLFQAFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562


>gi|229029236|ref|ZP_04185328.1| hypothetical protein bcere0028_13330 [Bacillus cereus AH1271]
 gi|228732075|gb|EEL82965.1| hypothetical protein bcere0028_13330 [Bacillus cereus AH1271]
          Length = 422

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 60/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFENLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NGIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNIAIDYNFSTELDDVLVH 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKKLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L     +D     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSNED-GTTFAISIP 409


>gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
 gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7822]
          Length = 1382

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLE-LLD--EVGIEDEVMQLIRLSS 57
            +     L+ +D    +  S I H++ +P+  I   LE +L   E  +       + ++ 
Sbjct: 338 ERKRAEALAELDRAKTVFFSNISHELRTPLTLIQGPLEEVLHQTESPLAPSTRASLVMAQ 397

Query: 58  MSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + +   K +     ++              D      ++  V    I       V    
Sbjct: 398 RNVLRLQKLVNTFLEFSRLEAGRIRAFYQPTDLGTFTQELASVFRSAIEQSGMRLVVHCP 457

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEK 163
                     ++   + +   ++  +             + +   F ++  G      E 
Sbjct: 458 PLPQPVYVDHQMWEKIVLNLLSNAFKFTFEGEIKVSLTWAGDRVKFEIQDTGIGIAEAEI 517

Query: 164 ---FTQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +     G    T +   I    V  L H +   +    I          L 
Sbjct: 518 PYLFDRFYRIQGAPSRTYEGSGIGLSLVQELVHLHGGTIEVNSIPAQGTCFRIYLP 573



 Score = 92.9 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 68/227 (29%), Gaps = 20/227 (8%)

Query: 5    ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSM 58
            +      +D  A +   + HD+ +P+ AI N  + + E             ++L+R    
Sbjct: 1158 LQKRNQELDQFAYV---VSHDLKAPLRAIANLSQWIQEDLEDVLPQENQAQLELLRQRVY 1214

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
                 +  +        + +++  +     + +   ++      +        +      
Sbjct: 1215 RMNNLIDSLLEYSRIGRTEETIEDVNVKNLLDDIIDSLSPPPSFTINVASSMPTVTTQKV 1274

Query: 117  ---KILLNLFMVAHA-SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               ++L NL            GK+ ISVQ+ KN   F +  +G      +   +I     
Sbjct: 1275 LLSQVLTNLISNGIKHHGRLDGKLEISVQEQKNFYQFFVSDDGQGI-PAQYQQKIFAIFQ 1333

Query: 173  ESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +S  I    V  +       ++    +      S    K
Sbjct: 1334 TVKTRETKESTGIGLSIVKKIVEIQGGNIILASQEGQGSTFSFTWPK 1380


>gi|307592363|ref|YP_003899954.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306986008|gb|ADN17888.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1262

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 63/232 (27%), Gaps = 27/232 (11%)

Query: 10   SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSA 60
             S  L  +     S + H++ +P+ ++  +L LL E  I+       E +++        
Sbjct: 1027 ESEKLARMKDEFISVVSHELRTPLTSLQAALSLLYEKIIDPTSDEGQETIEIATEGVNRL 1086

Query: 61   IIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------WTGEKID 110
            +      + L    +G +         + VI   +   K +                   
Sbjct: 1087 VRLVNDILDLERLSSGKIRLEKQFCQTDGVILAALDQIKEIAKEAQIIIKSEYENFFFWC 1146

Query: 111  LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFPEKFTQI 167
             S    +IL+NL   A    P+   + + VQ   +      FS+   G      +  +  
Sbjct: 1147 DSDRLVQILINLLNNAIKFSPQNSIIELKVQQQNSPMPSLLFSISDQGRGIPSDKLESIF 1206

Query: 168  VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +       +  ++   +               + 
Sbjct: 1207 DRFGQVDASDSRAKGGTGLGLAICRSIVTQHGGEIWVNSKLGQGSTFYFTIP 1258


>gi|189463855|ref|ZP_03012640.1| hypothetical protein BACINT_00188 [Bacteroides intestinalis DSM
            17393]
 gi|189438805|gb|EDV07790.1| hypothetical protein BACINT_00188 [Bacteroides intestinalis DSM
            17393]
          Length = 1347

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 59/231 (25%), Gaps = 20/231 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + K     +S M +   +   I H++ +P+  I   L+ L            ++    + 
Sbjct: 820  LDKEKQEEISQMKIRFYV--NISHELRTPLTLIVAPLQELINHINGHWEQAQLQYIQRNT 877

Query: 61   IIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
               L  +     Y         +           +           +           ++
Sbjct: 878  NRLLHLVNQLMDYRRAELGIFELRPTYSNAYKRVLNCFINYESLAKRKDIDYNFYTELQD 937

Query: 115  RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
               +    +           A      G  +T+ +    N  I  +   G      EK  
Sbjct: 938  EKMLFDENYLDLIVNNLLSNAFKYTEVGESITVKLCKEDNNLILQVVDTGIGI-PKEKQK 996

Query: 166  QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +   +  +  +   I    V  L   +  R++ +         S  L 
Sbjct: 997  KIFERFYQVENGCEGSGIGLSLVQRLVELHHGRIVLQSEVGKGSTFSIYLP 1047


>gi|86751212|ref|YP_487708.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86574240|gb|ABD08797.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 557

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 61/235 (25%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           + I        L     + + H++ +P+ +I  SL LL              ++ +   +
Sbjct: 187 REISARKHMERLRDEFVATVSHELRTPLTSISGSLGLLVGQWVGIFPEPAARLVAIAYKN 246

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------ 104
           S   +  +  +                      I +      R                 
Sbjct: 247 SQRLVRLINDILDIEKLGDGRVVFNLCRVDVHAIVEQAIESNRGFAEGYGVNVGLTTASR 306

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
           + +        A+++ NL   A  + P G  V ++V+        S++  G+        
Sbjct: 307 SSDVNADPDRLAQVITNLLSNAIKASPPGRDVLVAVEPHDAFVRISVRDQGDGIPATFRL 366

Query: 162 EKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +    V  +      R+  E       V    L 
Sbjct: 367 HIFEKFAQADATDARQKGGTGLGLSIVKQIVERLNGRVSFEDAAGGGTVFCVDLP 421


>gi|41016070|dbj|BAD07401.1| histidine kinase [Cochliobolus heterostrophus]
          Length = 359

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +N+     +    +L  + + H++ +P+  +    ELL    +  E         + A  
Sbjct: 8   RNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPLNGEQSGYADSIRVCADT 67

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTG 106
            L  +     Y+      + + ++   + + IA                  +++++    
Sbjct: 68  LLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELDPEM 127

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162
             +       +IL+NL   ++   PR       V         +   S+   G      E
Sbjct: 128 LVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEWADVTCSVIDTGIGI-PDE 186

Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
           +  ++     +       +     +       L        +  +        ++  L
Sbjct: 187 QKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTVTFSL 244


>gi|302338211|ref|YP_003803417.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635396|gb|ADK80823.1| multi-sensor signal transduction histidine kinase [Spirochaeta
           smaragdinae DSM 11293]
          Length = 603

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 59/230 (25%), Gaps = 26/230 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     + + H++ +PI +I   +E L     D+       + +++  +      +
Sbjct: 371 QLERMRKEFVANVSHELKTPITSIKGFVETLLDGAIDDRENAFRFLTIVQNQTTRLGNII 430

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------------DKRVQVSWTGEKIDL 111
             +        + +      +   +                    D  V+     E +  
Sbjct: 431 DDLLTLSRLEQNDEESGISMEKIPLCHPVNEAISICQGRADEKSIDIHVECDRELEILGN 490

Query: 112 SRERAKILLNLFMVAHASLPRGGKV-TISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                + ++NL   A    P G  V     ++     +  ++ NG      +   +I + 
Sbjct: 491 GHLIEQAVVNLVDNAVKYCPEGSVVLVRCEREEDRRILLVVQDNGPGIPEAD-QERIFER 549

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    +    V  +   +   +  E              
Sbjct: 550 FYRVEKARSRDMGGTGLGLAIVKHIMLLHGGTVALESSRGEGASFLLRFP 599


>gi|258621420|ref|ZP_05716454.1| sensor histidine kinase [Vibrio mimicus VM573]
 gi|258586808|gb|EEW11523.1| sensor histidine kinase [Vibrio mimicus VM573]
          Length = 733

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 58/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTAKQRQHLTSLYESG 399

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
              +  +     Y+                   +G I+ +                ++  
Sbjct: 400 EHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHSEIID 459

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
           T           +I+ NL   A     +G           D +      ++ +G      
Sbjct: 460 TRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIDDEYFLTIKVQDSGIGI-PQ 518

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +   +I                   +    V  +A      +  +            
Sbjct: 519 DALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEVR 575


>gi|170077996|ref|YP_001734634.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
 gi|169885665|gb|ACA99378.1| two-component hybrid sensor and regulator [Synechococcus sp. PCC
           7002]
          Length = 1019

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 61/255 (23%), Gaps = 43/255 (16%)

Query: 2   AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEV 49
            K     L +    A        L  + + H++ +P+  I    ++L         +   
Sbjct: 609 RKADELALQAAKKQAEEANRAKSLFLANMSHELRTPLNGILGYAQILMFDESLSAEQKSS 668

Query: 50  MQLIRLSSMSAIIRLKF-------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           + +I       +  +               +             I      +  E  + +
Sbjct: 669 LSIIEQCGQHLLRLIADVLDFSKIEAQRLELIPTAVQFHYFILDIIQTCQIKATEKQLLL 728

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSK 144
           +  +        +   +   ++LLNL   A     +                  S +   
Sbjct: 729 NYDIDPDIPDYLLVDDQRLRQVLLNLLGNAIKFTHQGSVVLDVQLSQPPQTPPKSPKHHW 788

Query: 145 NENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLP 199
           +   F+++  G     PE   +I           S      +       L       L  
Sbjct: 789 HRVHFAVRDTGCGI-DPENHQKIFLPFEQIGDRRSRPHGTGLGLAISQKLVAMMGGELQL 847

Query: 200 EIIDDHNVVLSALLE 214
               +     S  LE
Sbjct: 848 TSYPNKGSCFSFDLE 862


>gi|160945543|ref|ZP_02092769.1| hypothetical protein FAEPRAM212_03072 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443274|gb|EDP20279.1| hypothetical protein FAEPRAM212_03072 [Faecalibacterium prausnitzii
           M21/2]
          Length = 627

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +       + +L A L   I HD+ +P+ +I  +        E LD          +  
Sbjct: 386 KEQAALQARNEELRANLLRTISHDLRTPLTSISGNASNLLSNGETLDTETRNKICTDIFD 445

Query: 55  LSSMS---------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +                             +D +I         +              
Sbjct: 446 DAQWLIGLVENLLSITRIEDGRMNLQISPQLMDEMIEEALHHVNRKSCEHTITTQYGDEI 505

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +R   ++++NL   A    P G  + IS     ++ +  +  NG       K  
Sbjct: 506 LLVNVDARLIMQVVVNLVDNAIKYTPVGSVIQISAYRKDHQVVVDVADNGPGIPDRAKAQ 565

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  +  S  +       +   +   L       +  V S  L 
Sbjct: 566 VFEMFYTGQSRIADSHRSLGLGLPLCRAILTAHGGTLTLRDNIPNGSVFSFALP 619


>gi|126654761|ref|ZP_01726295.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126623496|gb|EAZ94200.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 364

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 58/215 (26%), Gaps = 20/215 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           L S + H++ +P+  +   LE L      G  D  + L++ +     +      L+    
Sbjct: 148 LISDMTHELRTPLTVMRGYLEELANGSIEGNPDLYLNLVKETRRLERLIHDLQELSKAEA 207

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----------ERAKILLNLF 123
           G +   +   ++  +++  +       +                         +IL+NL 
Sbjct: 208 GYLSITLHPINMIPLLKSLVERFSDQILEDGPTIQLNCPQELPQVLADSDRIEQILVNLM 267

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178
             A      G     +      +    +   G   +  +    F +    +   +     
Sbjct: 268 GNAIRYTEIGTITIKAWSTK-KQVWIEIIDTGIGIKSEDLPYVFERFWRADKSRSRYSGG 326

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             I       L      ++  E       V    L
Sbjct: 327 TGIGLAITRRLVELQGGKIEVESEIGKGSVFRFSL 361


>gi|126659304|ref|ZP_01730440.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619386|gb|EAZ90119.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 649

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 71/237 (29%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
           A+     L+ +       + + H++ +P+ AI   ++LL          +  +++I  ++
Sbjct: 266 AQEEAERLNHVK--DEFLATLSHELRTPLNAIIGWMQLLRSGTLNEDQFNTGLEVIERNA 323

Query: 58  MSAIIRLKFMRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 ++ +                      + L  I+ V     A +  + +  + + 
Sbjct: 324 NVQTQLIEDLLDVSRIICGTLKLEAQPINVISVILSSIDTVSPTAKAKNININLQLSSQT 383

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA------ 158
           I+++ ++ ++    + +   ++           +            +   G         
Sbjct: 384 IEINGDKERLQQVFWNLLINAVKFTPIDGSITIEGGEENNQMAFIRITDTGKGISGDVLP 443

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              ++F Q    +   T     +    V  +   +   ++ E    D     +  L 
Sbjct: 444 HIFDRFRQAEHKSSTRTQGGLGLGLAIVRHIVEMHGGSVMAESEGIDKGSTFTVELP 500


>gi|118468443|ref|YP_890098.1| sensor histidine kinase PhoR [Mycobacterium smegmatis str. MC2 155]
 gi|118169730|gb|ABK70626.1| sensor histidine kinase PhoR [Mycobacterium smegmatis str. MC2 155]
          Length = 475

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   +M  I   S    + ++ + L           
Sbjct: 257 SHELRTPLTTIRGFAELYRQGAARDIEMLMGRIESESRRMGLLVEDLLLLARLDAQRPLE 316

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----------ERAKILLNLFMVAHAS 129
               D+  +  D +   + +      +                    +++ NL   A   
Sbjct: 317 RRRVDLLALATDAVHDAQSIAPKRRVKMEVFDGPGTPEVLGDEARLRQVIGNLVANAVQH 376

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFY 184
            P    +T+ V    +  +  +   G      +    F +    +           +   
Sbjct: 377 TPETAGITVRVGTDGDNAVLEVCDEGPGMSQEDARRVFERFYRADTSRTRASGGTGLGLS 436

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L + +   +            +  L +
Sbjct: 437 IVDSLVYAHGGTVKVTTALGKGSRFTVSLPR 467


>gi|114798077|ref|YP_760121.1| sensor histidine kinase ChvG [Hyphomonas neptunium ATCC 15444]
 gi|114738251|gb|ABI76376.1| sensor histidine kinase ChvG [Hyphomonas neptunium ATCC 15444]
          Length = 544

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 71/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           M + +   + + +      + + H++ +P+ +I +++E L+   +      +  +I    
Sbjct: 305 MTEALIERIEANE---QFAADVAHELKNPLTSIRSAVETLERVQDPDAAARLRAVIASDV 361

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108
                 +            +    + ++D    + D+    E      + V V++T    
Sbjct: 362 KRLDRLITDISNASRLEAEMTRLPSETIDIARFVRDVVHTYEGLSDNAQAVHVAFTDATL 421

Query: 109 ------IDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLA 158
                         ++L NL   A +          ++  +    +      ++  G   
Sbjct: 422 GARLLVRGREGPLGQVLRNLVDNARSFSRPGSKVEVRLEQTNDGPRTIARILVEDAGPGI 481

Query: 159 RFPEKFTQIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +K   I +                 +    V  +   ++ ++  E   +     +  
Sbjct: 482 -PADKVETIFNRFYTDRPKGTAFGNNSGLGLSIVKQIVATHRGQVWAENRPEGGARFTVD 540

Query: 213 LE 214
           L 
Sbjct: 541 LP 542


>gi|295097697|emb|CBK86787.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 772

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 283 STISHELRTPLNGIVGLSRILLDTELTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 342

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  ++      +    + +       +IL NL 
Sbjct: 343 KVQLDNQPVDFTGFLADLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLI 402

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E+                    
Sbjct: 403 SNAVKFTQKGQVAVRIRYDEGDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPAT 462

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +            +  
Sbjct: 463 GTGIGLAVSKRLAKSMGGDITVASQPGKGSTFTLT 497


>gi|284048185|ref|YP_003398524.1| integral membrane sensor signal transduction histidine kinase
           [Acidaminococcus fermentans DSM 20731]
 gi|283952406|gb|ADB47209.1| integral membrane sensor signal transduction histidine kinase
           [Acidaminococcus fermentans DSM 20731]
          Length = 549

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 16/224 (7%), Positives = 56/224 (25%), Gaps = 21/224 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +PI  I    E L +          +  +LI   +      +  
Sbjct: 286 EKMRRDFVANVSHELRTPITIIQGYNEALSDGTITDPEDVKKYRKLINDETRRLERLINE 345

Query: 67  MRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +                      +  + ++ +       +     V  +           
Sbjct: 346 LLDISRLQRGEGEEMEPIPLGKVVESVVNMLEGRAKKRDIRLEQYVDDSLLVYGNGDRLY 405

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK---FTQIVDGN- 171
           ++++ L   A    P    +   V ++  +  + ++   G      +    + +    + 
Sbjct: 406 QLVMILGDNAMKYSPDSSVIRFQVMENGRKGTVLTVADQGFGIPEEDIPYIWERFYKADK 465

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I    +       +   +K ++  +              
Sbjct: 466 SHSRHIPGTGLGLAIGKEIIRMHKAKVQVQSKVGKGTAFVITFP 509


>gi|284041387|ref|YP_003391317.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820680|gb|ADB42518.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 863

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 63/240 (26%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  L     + + H+I +P+ A+    ELL+   ++ +  + +RL   + 
Sbjct: 345 LQEARIMAEKAAKLKEDFLANMSHEIRTPLNAMLGFSELLETTNLDADQQEFLRLIRTAG 404

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104
                     + ++    G +        I+ +     A+ +                  
Sbjct: 405 KNLLTIVNDILDISKIEAGMIQLESIPFSIQMLTASIKAMCQGAATDKGLQLIVEVDPNL 464

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLAR 159
               +       +ILLNL   A     +G      +       +     F ++  G    
Sbjct: 465 PTVFMGDPTRLTQILLNLINNAIKFTKQGSVTLLIEQGERKTSASIPVRFIVQDTGIGMA 524

Query: 160 FPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  F +                +    V  L    K  +  E         +  + 
Sbjct: 525 REALPTIFERFQQADKFTTRYYGGTGLGLNIVKSLTELQKGSVSVESTLGKGSRFTVEIP 584


>gi|312113934|ref|YP_004011530.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219063|gb|ADP70431.1| integral membrane sensor signal transduction histidine kinase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 481

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/203 (8%), Positives = 65/203 (32%), Gaps = 7/203 (3%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + + + HD+ +PI ++    E +++  +  +++Q +          L + +         
Sbjct: 262 MLAALSHDLRTPITSLRLRAEFIEDDEMRRKILQTLAEMFQMTEAALAYAKGGELEELEE 321

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
             L+ +G +   +   +                L      +   L  +   ++  G    
Sbjct: 322 SRLVDVGALVSSVCADLEDMGAPVECSDTPSFSLHCRAFALKRALRNIVVNAVAYGTHAR 381

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAH 191
           ++ Q + NE +  ++ +G      +   ++            +      +       +A 
Sbjct: 382 VTTQLTGNEALIVVEDDGPGI-PEDDMEKVFSPFVRLENSRNADTGGMGLGLAIARGIAR 440

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ +   +  + ++  L 
Sbjct: 441 FHGGDVILKNRPEGGLRVTIALP 463


>gi|297569334|ref|YP_003690678.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925249|gb|ADH86059.1| histidine kinase [Desulfurivibrio alkaliphilus AHT2]
          Length = 520

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 64/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--LDEVGIEDEV------MQL 52
           + ++       M+ +  L   + HD  + +  +    EL  L     +         ++ 
Sbjct: 136 LLQSQLNQAQKMEAIGALAGGVAHDFNNILTVVKGYAELGLLRLQESQPGHEEFAGILEA 195

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            + S+      L F R        +D    +  + +++   I  +  +      +   + 
Sbjct: 196 AQRSTDLTRQLLAFARKQTANPIVLDLNETVTGMLKMLRRLIGEEIELDWQPAADLWPVK 255

Query: 113 RERAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKIN 154
            +  ++   L  +   +                  L      T +        + ++  N
Sbjct: 256 MDPGQVDQVLANLCINARDAISYEGRISIATANVVLNDQYCTTHASCLPGEYVLLTVSDN 315

Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E  T I +    +        +    V  +  +N+  +               
Sbjct: 316 GAGM-DRETQTHIFEPFFTTKETGKGTGLGLATVYGIIKQNQGFINFYSEPGQGSTFRIY 374

Query: 213 LE 214
           L 
Sbjct: 375 LP 376


>gi|257879040|ref|ZP_05658693.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257881664|ref|ZP_05661317.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|257890892|ref|ZP_05670545.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|258615326|ref|ZP_05713096.1| sensor histidine kinase [Enterococcus faecium DO]
 gi|293562841|ref|ZP_06677313.1| two component sensor kinase [Enterococcus faecium E1162]
 gi|294623350|ref|ZP_06702210.1| two component sensor kinase [Enterococcus faecium U0317]
 gi|314950223|ref|ZP_07853507.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0082]
 gi|257813268|gb|EEV42026.1| histidine kinase [Enterococcus faecium 1,230,933]
 gi|257817322|gb|EEV44650.1| histidine kinase [Enterococcus faecium 1,231,502]
 gi|257827252|gb|EEV53878.1| histidine kinase [Enterococcus faecium 1,231,410]
 gi|291597244|gb|EFF28435.1| two component sensor kinase [Enterococcus faecium U0317]
 gi|291605165|gb|EFF34627.1| two component sensor kinase [Enterococcus faecium E1162]
 gi|313643450|gb|EFS08030.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0082]
          Length = 347

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           + K+    +  ++    L     S + H+  +P+  I   ++LL      +   +  + +
Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 170

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWT 105
           +I   +  + +    ++L       +                 V        +++++   
Sbjct: 171 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFFQPKWEKEQLELDIE 230

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
              ++ +       ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQINGQIHIKLFETATEIVLEVTDSGVGMNEET 290

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 346


>gi|213022585|ref|ZP_03337032.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhi str. 404ty]
          Length = 320

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 79  ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 137

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 138 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 197

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      N     +  NG      +  
Sbjct: 198 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDNRLQLDVWDNGPGIPAGQEQ 257

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 258 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 310


>gi|195940455|ref|ZP_03085837.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           O157:H7 str. EC4024]
          Length = 777

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  ++      +    + +       +IL NL 
Sbjct: 348 KVQLDNQPVDFTGFLADLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQKGQVAVRIRYDEGDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +            +  
Sbjct: 468 GTGIGLAVSKRLAKSMGGDITVASQPGKGSTFTLT 502


>gi|169350203|ref|ZP_02867141.1| hypothetical protein CLOSPI_00947 [Clostridium spiroforme DSM 1552]
 gi|169292986|gb|EDS75119.1| hypothetical protein CLOSPI_00947 [Clostridium spiroforme DSM 1552]
          Length = 464

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLS 56
           MA+ +       +      S I H+  +P+ AI     +L +  +      +   +I   
Sbjct: 217 MAQQLA---KQEETRQKFISDISHEFQTPLTAIQGFANILKDEDLPKSQRQKYADIILFH 273

Query: 57  SMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           S       K M                 ++        +   E             +   
Sbjct: 274 SKRLSTLSKNMLQLTLLEREEVELEYTTFSIVEQLSRVISTQENQAILKDIEIVFEKPRK 333

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                   +   ++ +N+   A      GG +TI V+ +  E   S++  G         
Sbjct: 334 DITVNGDEQRLEQVWINIISNAIKYTDNGGLITIKVKKTSKEVEVSIEDTGRGMSKEVIS 393

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +   +++ + +    V  +   +   +      D        L 
Sbjct: 394 HIFERFYREDKARSVEGNGLGLSIVKSIIDLHHGNIDVISQVDVGSTFIIKLP 446


>gi|152972282|ref|YP_001337428.1| osmolarity sensor protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238896871|ref|YP_002921616.1| osmolarity sensor protein [Klebsiella pneumoniae NTUH-K2044]
 gi|262045240|ref|ZP_06018266.1| osmolarity sensor protein EnvZ [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|150957131|gb|ABR79161.1| osmolarity sensor protein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|238549198|dbj|BAH65549.1| osmolarity sensor protein [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259037450|gb|EEW38695.1| osmolarity sensor protein EnvZ [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 451

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +         +             + L N+ + A      
Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIATALQAGEIPVRMHPLSIKRALANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     +   F ++ +G      +    F   V G+   +     +    V  +
Sbjct: 353 NGWIKVSSGSEASRAWFQVEDDGPGIKPEQREHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +  RL     +   +++ A L 
Sbjct: 413 IDNHNGRLEIGSSERGGLLIRAWLP 437


>gi|332361249|gb|EGJ39053.1| sensor histidine kinase [Streptococcus sanguinis SK1056]
          Length = 344

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 77/236 (32%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +       S     ++ +++ HDI +PI +I  ++E + +       +   +  I   
Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +      ++ + +                       LI +    Q++ +    D  +QVS
Sbjct: 166 TERLNKLVEELDILTLNAQPQIESDGEAEIVFLDQLLIEVMSEFQLLIEREERDIYIQVS 225

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               KI    ++ ++ILLNL   A      G K+ I  Q ++     S+K  G       
Sbjct: 226 PESAKIKSHYDKLSRILLNLLNNAFKYSDPGTKIEIVAQLTEQILTISVKDEGRGISPEN 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +       LAH+    +  E         +  L
Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEITVESQYGLGSTFTFTL 341


>gi|309792417|ref|ZP_07686883.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308225527|gb|EFO79289.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 616

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 60/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLI 53
           + +       +  L     + + H++ +P+  I    E L +          +  V  + 
Sbjct: 224 LEEANTNLAKAARLKDQFLANMSHELRTPLTGIIGFSEALSQGLYGALGDAQQRAVQHVF 283

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSL-----------IGLGDIEQVIEDFIAVDKRVQV 102
                   +    + LA    G VD               +  +  + +           
Sbjct: 284 DNGQHLLQLINDILDLARIGAGHVDLKLGPVLVDDACGEVIDLLNGLFQSKKQQFTYTAC 343

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARF 160
                         +IL+NL   A    PRGG +   I     + E  F +  +G     
Sbjct: 344 EAGLSIEADILRVRQILINLLSNASKFTPRGGALGLEIHYDAQRKEVQFCIWDHGIGIAA 403

Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++             +        +    V  L   +  R+  E            L 
Sbjct: 404 NQQNMLFQPFVQLDDRLARDQPGTGLGLALVRQLVTLHGGRIEVESRVGEGSRFRVFLP 462


>gi|289548061|ref|YP_003473049.1| histidine kinase [Thermocrinis albus DSM 14484]
 gi|289181678|gb|ADC88922.1| histidine kinase [Thermocrinis albus DSM 14484]
          Length = 322

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 47/221 (21%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
               L   L   + H++ +P+ A+   LE   +       +             +  M +
Sbjct: 99  QYEKLKRDLVENVAHELKTPLSAVTLLLERAAKECPSSFAIHRALHRLQQMEKLIDDMLI 158

Query: 70  -----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                              + L  +    +   +   V+    V  +   +    +   I
Sbjct: 159 LARLESGVERLHLTEIHLREFLQDVYYQLREEFEKAKVNFENLVDESFVLVADENKLYLI 218

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----E 173
           L NL   A      GG V +         +  +   G                       
Sbjct: 219 LRNLLENAVRYNREGGSVRVRGWKEGQMAVVEVSDTGIGIPKEHIPFIFDRFYRVDKGRS 278

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    V      +   +  +            + 
Sbjct: 279 RDRGGTGLGLSIVRNAVRLHGGSIELQSEVGKGSTFRIYIP 319


>gi|226225613|ref|YP_002759719.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
 gi|226088804|dbj|BAH37249.1| putative two-component hybrid sensor and regulator [Gemmatimonas
           aurantiaca T-27]
          Length = 806

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 65/238 (27%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57
            ++   +   M+ +  L   + HD  + + AI  S +L  +           +  I+ S+
Sbjct: 419 RQDRMRHAERMESLGRLAGGVAHDFNNLLTAIVGSADLALDELPIDHPARAELATIKSSA 478

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----- 112
             +    + +          ++   L  I Q     +       V+              
Sbjct: 479 SRSGSLTRQLLDFSRRAPLSNAPQRLDAIVQGAAALLVRVMPASVTLDVHTASHKLVRVD 538

Query: 113 -RERAKILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNLA 158
                + ++NL + +  ++P+               + +     +      ++   G+  
Sbjct: 539 AGRIEQAIMNLAVNSRDAMPKGGRLVIELDDVETTSQESPDHPPAGAWVRLTVSDTGHGM 598

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P+   +I +    +        +    V      +   +           ++  L 
Sbjct: 599 -TPDVRRRIFEPFFTTKGVGQGTGLGLAMVYGTVQYHGGHVHVRTAPGDGTTITIWLP 655


>gi|94263959|ref|ZP_01287761.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455631|gb|EAT05813.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 422

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 63/241 (26%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDL----VAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            KN      S +L      L      + HD+  P+  ++  ++LL+    +    +   +
Sbjct: 173 RKNRQLEEKSAELTRSNAELEQFAYVVSHDLRQPLRMVNGYMQLLERALDDKLDDETREM 232

Query: 56  SS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                         L  +          + +  L   E V E    ++  +  +    K 
Sbjct: 233 MGFAVGGAQRMDHMLVSLLDYSRVGRRGEPMAPLASREAVAEALHFLEPEINQTGATVKR 292

Query: 110 DLSR--------ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLAR 159
                       E  ++  NL   A        K  I   V    N   F++  NG    
Sbjct: 293 SGDWPEIVASRDEFTRLWQNLIGNALKYRDPQRKPEIELSVSPEANGWRFTVADNGIGID 352

Query: 160 FPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             + F ++             D   I       +   +  R+  E             L 
Sbjct: 353 PGQ-FDRLFKVFQRLHPKDQYDGTGIGLAVCRKIVERHGGRIWVESEGVGQGSRFIFTLP 411

Query: 215 K 215
           +
Sbjct: 412 R 412


>gi|88604425|ref|YP_504603.1| response regulator receiver sensor signal transduction histidine
           kinase [Methanospirillum hungatei JF-1]
 gi|88189887|gb|ABD42884.1| response regulator receiver sensor signal transduction histidine
           kinase [Methanospirillum hungatei JF-1]
          Length = 391

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 75/232 (32%), Gaps = 20/232 (8%)

Query: 2   AKNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------- 53
            +     +     ++  L + I HD+ +P+  I N   LL+    +    +L        
Sbjct: 159 ERTRQLQVAQRFAVIGELATMIGHDMRNPLQVITNMQYLLEMRMQKMSKEELEILHRNGI 218

Query: 54  -----------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                      +  +        + R        ++    + D+   I    +V  ++++
Sbjct: 219 PEIFDRIGTEIQYLNKIISDLQDYAREVNPEKSRINLKTFIEDLILKISPPPSVLVKIEI 278

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +      ++++ NL + A  ++  GG +T++   ++++ I S++  G      E
Sbjct: 279 QSGMIVLVDPVLLSRVMENLMINAIQAMDTGGTLTLTSHIAEDDIIISIRDTGPGI-SAE 337

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++I D    +      +       L   +  ++               L 
Sbjct: 338 AQSRIFDPLFTTKPKGTGLGLSVTKRLIEAHGGKITLVETSPAGTTFEVSLP 389


>gi|78213432|ref|YP_382211.1| adaptive-response sensory kinase [Synechococcus sp. CC9605]
 gi|78197891|gb|ABB35656.1| histidine kinase [Synechococcus sp. CC9605]
          Length = 411

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 68/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + +     +  +     L   + H++ +P+ A   +L+         +   +    +L  
Sbjct: 160 LRQENETLIDRVSAQERLLRMVAHELRTPLTAAALALQSQKLGQIDMDRFQDVITRRLEE 219

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           + ++S  +                     +    I ++ + ++  +  +Q        + 
Sbjct: 220 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIQTDIPADLPKV 279

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A      GG +++++   +      S+  +G      E+    
Sbjct: 280 FADQRRMRQVLLNLLENALKYTNDGGHISLTMLHRTSQRVEVSVCDSGPGIPETEQQRIF 339

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++           + +       +   +  ++            +  + 
Sbjct: 340 LDRVRLPQTSDQTTGYGVGLSVCRRIVEVHGGKIWVVSDPGEGACFTFTVP 390


>gi|115522289|ref|YP_779200.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115516236|gb|ABJ04220.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 911

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 71/243 (29%), Gaps = 30/243 (12%)

Query: 1   MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--- 56
           M          ++  +  L   + HD  + +  I   +E+L +   +   ++ + L    
Sbjct: 522 METERQLREAQNLQTIGQLTGGVAHDFNNILTVITGGVEILADGVTDRPALKDVALMVDQ 581

Query: 57  -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                       L F R       SVD    + DI +++   +     ++V    + +  
Sbjct: 582 AVSRGRELTNQLLSFARKQPLRPRSVDVNALVLDIAKLLRSTLGEQIEIEVEPASDLLPA 641

Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153
             + +++   L      A  ++P GGK                  S   +    + ++  
Sbjct: 642 LADPSQLGSALINLAINARDAMPGGGKLLLETGIVDLDAAYAAQHSEVVAGCYVMLAVSD 701

Query: 154 NGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G          ++ +    +    +   +    V     ++   +     + H   +  
Sbjct: 702 TGTGIPAA-IRDRVFEPFFTTKDVGEGTGLGLSMVYGFVKQSGGHIEVYSEEGHGTTIRL 760

Query: 212 LLE 214
            L 
Sbjct: 761 YLP 763


>gi|119385688|ref|YP_916743.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119376283|gb|ABL71047.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 597

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 29/240 (12%)

Query: 1   MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE---- 46
           M K +         S  L AL  + + + H++  P+ A+   L     LL     E    
Sbjct: 346 MQKELRVAEQTVQQSSKLAALGEMSAGVSHELNQPLAAMKTYLAGARLLLQRGRAEEAQS 405

Query: 47  --DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRV 100
               +  L+            + R        VD    L     ++E          +R 
Sbjct: 406 SFQRIDDLVERMGAITRQLKSYARKGGEAFEPVDLRAALSSALVMMEPQLRSRTIRLQRT 465

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLAR 159
              +            +I++NL   A  ++             S +    S++ NG    
Sbjct: 466 IPRYPVMVYCDRIRLEQIIINLLRNAVDAIKGVRDPAIEITVSSGSHAFLSVRDNGPGVS 525

Query: 160 FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI---IDDHNVVLSALLE 214
             E    + +    +    +   +       +A +   RL             V    L 
Sbjct: 526 DLEN---LFEPFFTTKKPGEGTGLGLAISSGIAADFGGRLTAHNALDEGGRGAVFELELP 582


>gi|269965885|ref|ZP_06179978.1| Osmolarity sensor protein envZ [Vibrio alginolyticus 40B]
 gi|269829438|gb|EEZ83679.1| Osmolarity sensor protein envZ [Vibrio alginolyticus 40B]
          Length = 430

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/209 (11%), Positives = 69/209 (33%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHA 128
               +     +  +       E    V+    ++         +    + + NL + A  
Sbjct: 280 VNQESFEAVDISTIASDVASSEGGYEVEIETDLNLNLPPAKGSAIAIKRAISNLVVNALR 339

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 K++  V   K     S++ NG      +    F     G+     +   +    
Sbjct: 340 YGNGWVKISTGVTADKQLVWISVEDNGPGIEHSQIARLFEPFTRGDTARGSEGTGLGLAI 399

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++     +  ++    L 
Sbjct: 400 VKRIISQHSGSVVMRNRSEGGLIAQISLP 428


>gi|197124763|ref|YP_002136714.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
 gi|196174612|gb|ACG75585.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
          Length = 363

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 57/220 (25%), Gaps = 24/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM------SAIIRLKFMRLAF 71
           L + + H+I +P+  +  S ELL              ++             L   R A 
Sbjct: 141 LAAGLAHEIKNPLAGLQGSAELLAREAEGPAREYAAVIAREAKRVDGLVRELLDLARPAA 200

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILLNLFMV-- 125
              G V     LGD   +       D+   V      +        +  +++LNL     
Sbjct: 201 LQQGPVALHDVLGDALVLARGIPGADRIAFVERYDPSLPPVLGDEEKLMQVVLNLVRNAV 260

Query: 126 -----------AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
                         +     ++ ++   ++     S++  G          ++      S
Sbjct: 261 DAVAATAAPRVTIETSVSPLRLRVASGRTRPLARISIQDEGPGIPEAML-QRLFTPFATS 319

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +  R+            +  L 
Sbjct: 320 KPHGTGLGLAISRRIVEAHGGRIEVRNRAGGGAEANVYLP 359


>gi|312114352|ref|YP_004011948.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311219481|gb|ADP70849.1| multi-sensor signal transduction histidine kinase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 875

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 72/235 (30%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           + +N     +S  L     S + +++ +P+  I    ++L E     + ++  + +    
Sbjct: 618 LERNEALE-ASDRLKTAFLSHVSYELRTPLTTIIGFTDMLAEPAFGALNNKQREYLDHIK 676

Query: 58  MSAIIRLKFMRLAFGYTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG- 106
            S+ + L  +                      +  L +  ++          V +     
Sbjct: 677 TSSEVLLNIINDIIDLAALDAGALDLKLAPVEIESLIEAAELGVRERLSRANVNLDVHIA 736

Query: 107 ----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +  +    ++L NL   A    P  G +T++ +  KN    S++  G      E
Sbjct: 737 SGAGTVMADANRLIQVLYNLLSNAIGFSPEDGTITLACRREKNGVAISVQDTGLGIPEEE 796

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  S      +    V  +   +K R+           ++  L 
Sbjct: 797 QATVFDRFESRSKGSRHRGAGLGLTLVKSIVELHKGRIDLRSTPGAGTTVTVFLP 851


>gi|238751146|ref|ZP_04612641.1| Osmolarity sensor protein envZ [Yersinia rohdei ATCC 43380]
 gi|238710624|gb|EEQ02847.1| Osmolarity sensor protein envZ [Yersinia rohdei ATCC 43380]
          Length = 434

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 198 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 257

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T S D    LG++      +  V +                
Sbjct: 258 CNAIIEQFIDYLRTGQEMPTESSDLNAVLGEVIAAESGYERVIETDLCDGEVMVDIHPLS 317

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  +    F   V G+
Sbjct: 318 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 375

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A + 
Sbjct: 376 SARSTSGTGLGLAIVQRIIDAHAGSLEIGASERGGLRIRAYIP 418


>gi|218781754|ref|YP_002433072.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763138|gb|ACL05604.1| multi-sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1104

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 58/224 (25%), Gaps = 25/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT- 74
           +   + + H+I +P+  +     LL +  +++   +       SA   L  +     ++ 
Sbjct: 456 SQFVANMSHEIRTPMNGVIGMTGLLLDTDLDERQREFAETIQSSAANLLTVINDILDFSK 515

Query: 75  -------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKIL 119
                            +L  + D+  +      ++    V        +       +++
Sbjct: 516 IEADKLELESIGFDLRFTLEDVSDLLAIKAQAKNLEFVCMVDPDVPSLLVGDPGRLRQLI 575

Query: 120 LNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQI-----VDG 170
           +N+   A      G  V   V +     K    F++   G      ++         +D 
Sbjct: 576 INICNNAIKFTREGEVVVRVVGEEIKEDKAYLRFTITDTGIGIPEDKQNDLFAPFTQMDA 635

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +         +       L       +               L 
Sbjct: 636 STTREYGGTGLGLSICKRLVQLMNGEIGVSSRPGEGATFWFSLP 679


>gi|158338978|ref|YP_001520155.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
 gi|158309219|gb|ABW30836.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
           marina MBIC11017]
          Length = 811

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 53/231 (22%), Gaps = 22/231 (9%)

Query: 4   NICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIR 54
           N     S+ +L   A + S   HD+  P+  I +  +LL +          +  +  +  
Sbjct: 584 NSELIRSNQELGHFAYVAS---HDLQEPLRKIGSFTDLLADRYQGQLDETADRYIRYITD 640

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +     +    +  +      +                 + +        + +      
Sbjct: 641 GAMRMQGLIDDLLNYSRVGRAELKVQPTALSSILEKVKSDLEKVIEKRQVEIIIDSLPTV 700

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPE---KF 164
                   ++  NL   A                   +     ++ NG           F
Sbjct: 701 AVDPVLMGQVFQNLISNAIKYCQADRPRIYIRATQDQKFWTISVQDNGIGINPQFTDRIF 760

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +         I       L   +  ++  +  +      S  L K
Sbjct: 761 VIFQRLHHREEYSGTGIGLAICKKLVERHGGQIWVDSEEGKGANFSFTLPK 811


>gi|51244735|ref|YP_064619.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875772|emb|CAG35612.1| related to two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 1041

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 69/226 (30%), Gaps = 28/226 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +  + + H+I +P+ AI   L ++ E       +   ++     +    +I    + ++ 
Sbjct: 449 IFLANMSHEIRTPMNAILGFLAIVLESSSLPADLRKHIVTAHGSAESLLVIINDVLDVSK 508

Query: 72  GYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKIL 119
             +G ++ +  +  +        + +       +  + +          +  S    +++
Sbjct: 509 FDSGRMELVFSVFHLPRTIGKALQTLYMPAQEKELNIHLNYDEDLPYCFLGDSVRLRQVI 568

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +NL   A      G         S  +   +F++   G     PE+  +I +        
Sbjct: 569 INLVANAIKFTEEGSITIEVKGTSGEDDLLLFTVVDTGIGI-RPEQVARIFEPFTQADDS 627

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LEK 215
               I    +       +      R+  E         + +  L +
Sbjct: 628 STRNIGGTGLGLAICKEIVDLMGGRIWVESEKGKGSSFNFMVPLPR 673


>gi|320103763|ref|YP_004179354.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera
           pallida ATCC 43644]
 gi|319751045|gb|ADV62805.1| PAS/PAC sensor signal transduction histidine kinase [Isosphaera
           pallida ATCC 43644]
          Length = 460

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/230 (8%), Positives = 54/230 (23%), Gaps = 26/230 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I    +      L++  I    +  I   +    + +  
Sbjct: 197 ERMRQDFVANVSHELKTPLASIRAYADSLLDWALEDPEITRRFVSQIDEQAERLDVLIHD 256

Query: 67  M-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +                      +         ++     +++    ++      +    
Sbjct: 257 LLSLARIESGQDLITFRPLALAPLVERRVESFRDRAQSRNVSLSFVTELPPQFTILADEE 316

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE---KFTQI 167
              +IL NL   A             V             +  NG      E    F + 
Sbjct: 317 ALRQILDNLIDNAIKYSSDVDPWVKVVCRGDGEAGMVAIDVIDNGLGIASEEQTRIFERF 376

Query: 168 VDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +           +    V  L    +  +  +         +  L +
Sbjct: 377 YRVDKARSRERGGTGLGLAIVKHLVQALRGEIELQSRVGAGSRFTVRLPR 426


>gi|260463215|ref|ZP_05811417.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259031065|gb|EEW32339.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 594

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 78/248 (31%), Gaps = 38/248 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + +++      + + H++ +P+ ++ +++E L           +M++I+   
Sbjct: 348 MTNALYARIEAIES---FAADVSHELKNPLTSLRSAVETLPLAKNDNSRSRLMEIIQHDV 404

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
                 +  +  A            G+VD    + D+  V  +     K V++ +     
Sbjct: 405 RRLDRLITDISDASRLDAELAREDAGTVDLKKFITDLVAVSREATRNKKAVEIEFKVAKL 464

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLA 158
                    +       +++ NL   A + +P   G +++S+  +   NI ++  NG   
Sbjct: 465 PQGVKGYFVVGHDLRIGQVITNLIENARSFVPEDHGHISLSLARAGKFNILTIDDNGPGI 524

Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD------HN 206
              +   +I +                 +       +   +   L  E I          
Sbjct: 525 -RADNIDRIFERFYTDRPAGEAFGQNSGLGLSISRQIVEAHGGTLTAENIPGTKPGEIKG 583

Query: 207 VVLSALLE 214
                 L 
Sbjct: 584 ARFVVTLP 591


>gi|229018449|ref|ZP_04175311.1| hypothetical protein bcere0030_29750 [Bacillus cereus AH1273]
 gi|229024705|ref|ZP_04181144.1| hypothetical protein bcere0029_30160 [Bacillus cereus AH1272]
 gi|228736548|gb|EEL87104.1| hypothetical protein bcere0029_30160 [Bacillus cereus AH1272]
 gi|228742801|gb|EEL92939.1| hypothetical protein bcere0030_29750 [Bacillus cereus AH1273]
          Length = 436

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNTPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S               +     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARVDQGEHSTFQFECINMSELTEIVVEELSLMVQEASIDITTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGIVNMQLFRDETNIIGKVSDNGIGISEQHIA 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|229116991|ref|ZP_04246373.1| hypothetical protein bcere0017_32730 [Bacillus cereus Rock1-3]
 gi|228666395|gb|EEL21855.1| hypothetical protein bcere0017_32730 [Bacillus cereus Rock1-3]
          Length = 417

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 71/223 (31%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58
           K          + + L + I H+I +P+  +H   +LL+E       +D+ ++++ +   
Sbjct: 195 KEKLQRAEKFYIASELAASIAHEIHNPLTTVHGFTQLLNEKHASKLSQDQYLEIMLIEMQ 254

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111
                +           ++   I +  I   +++          VD +   + +      
Sbjct: 255 QIQSTINNYLSLTKPKNTLKEKIDINYILNQVKETISPLALSYKVDIKQNSTDSFYINGD 314

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +    L N+      ++  GG + I++Q  K   I  +  +G      +   +I    
Sbjct: 315 PEKFRLCLNNIIQNGIEAMKNGGVLQINIQKIKGNIIVDIIDSGVGMSSQQIK-RIALPF 373

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +T     +       +  E    +  E         S  + 
Sbjct: 374 YSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTRFSISIP 416


>gi|218780781|ref|YP_002432099.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762165|gb|ACL04631.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 808

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 23/233 (9%)

Query: 5   ICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-------- 54
               + S  L A   L + + H+I SP+ AI   L  +     +D  +            
Sbjct: 562 ESQLIRSERLAATGQLAASVAHEINSPLQAITMMLGAIKREYADDRELCSQIDLLKGAFL 621

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKIDL-- 111
               +    L   R         +    +     +   ++   +  V +       D+  
Sbjct: 622 NIRDTVKNLLDLNRPGKEKRQKTNINRIIEGSVGLGASYLKKSRVEVSLDLDESIPDILA 681

Query: 112 -SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---------FSLKINGNLARFP 161
             ++ ++++LNL   A  ++                             +  +G      
Sbjct: 682 SPQQMSQVVLNLVNNAVEAISANADDYGPGLKGGIVVKTQRRNSSLVMQVMDDGPGIAPE 741

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                  +     + +  E++  +      +   + +  L 
Sbjct: 742 DLNKVFDPFYTRKKKMGMGVGLSICLGIIEEHRGSISVANNPEGGAIFTITLP 794


>gi|219851326|ref|YP_002465758.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
 gi|219545585|gb|ACL16035.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanosphaerula palustris E1-9c]
          Length = 929

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 25/231 (10%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRL 55
                S+ +L   A + S   HD+  P+ +I +  +LLD       +   ++ +  ++  
Sbjct: 701 EKLMASNEELQRYAYVAS---HDLQEPLRSIVSFSQLLDRRYRGKLDKDADEYIKFIVDG 757

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 +    ++++   T +               I  +       + RV V      +
Sbjct: 758 GVRMQALIKDLLQVSRIETQAQPLAPTDANAVVADSIRSLKTPIHDNNARVTVDPLPIVM 817

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQI 167
               +  +I  NL   A           I+V  +   N   FS++ NG      E F +I
Sbjct: 818 ADPSQLEQIFTNLIGNAIKYHRPEMPPAITVSAERHGNWWEFSVRDNGIGI-KAEFFDRI 876

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +   I    V  +   +  R+  E            L 
Sbjct: 877 FEMFRRLHTIDEYEGTGIGLAIVKKIVERHGGRIRIESELGEGSTFFFTLP 927


>gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response
           regulator subunits [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component
           complex [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane
           protein; putative signal peptide [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 1065

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 70/236 (29%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           + +   L ++  L     +   H++ +P+  I    E + +         + + + +I  
Sbjct: 416 ETLSKRLLALDKLKDEFLANTSHELKTPLNGIIGIAESMFDGIGGKLNQEQRQNLGMIVS 475

Query: 56  SSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
           S           +  +      +D  +   D+ Q+ +  + + + + V+      +    
Sbjct: 476 SGKRLSSLVDDILDFSKMKNRDLDLDLKAIDLHQICDFVLVISRPLYVTKNLTVRNNVPI 535

Query: 114 ----------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +IL N+   A     + G++ +S +  +   + S++  G      + 
Sbjct: 536 DFPPILGDEARLQQILFNIIGNAIKFTEK-GRIDVSAEIIEKMAVISIRDTGIGIPKDKF 594

Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     D +         +       L   +   +  E       + S  L 
Sbjct: 595 GDIFRSFEQVDASTTRKFGGTGLGLAISKRLVELHGGNIWVESTPAEGSMFSFSLP 650


>gi|71734748|ref|YP_273029.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555301|gb|AAZ34512.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 530

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L           A ++ + V  +   +   
Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVTEFRSSTAPNQSIHVDISPGTLTTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            R        + +      +  I  ++ +G         
Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHL- 474

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++ +    +      +  Y    L   N+  L           L   
Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522


>gi|33240571|ref|NP_875513.1| adaptive-response sensory kinase [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|54036392|sp|Q7BWI3|SASA_PROMA RecName: Full=Adaptive-response sensory-kinase sasA
 gi|6469285|emb|CAB61760.1| putative His-kinase [Prochlorococcus marinus]
 gi|33238099|gb|AAQ00166.1| Signal transduction histidine kinase [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 381

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 63/231 (27%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--------LLDEVGIEDEVMQL 52
           + +      + ++    L   + H++ +P+ A   +L+        L+    +    ++ 
Sbjct: 134 LRQENETLSNQIESQERLLRMVAHELRTPLSAAKLALQSQALGQIDLIKLQEVVKRRLEE 193

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDS-LIGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           I   S   +        A       +   I    I ++ + +++    +           
Sbjct: 194 IESLSKDLLEVGTTRWEALFNPQEANLANIAAEVILELEKFWLSRGIGINTDIPADLPNV 253

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
                   ++LLNL   A      G  V I++   +      S+   G      E+    
Sbjct: 254 FADQSRMKQVLLNLIENALKFSNDGDTVEITMLHRTNQWVQISVSDKGPGIPEEEQQRIF 313

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      +      I       +   +  ++               + 
Sbjct: 314 LDRVRLPQTSNETSGFGIGLSVCRRIVEVHGGKIWVVSQPGEGSCFYFTVP 364


>gi|163939372|ref|YP_001644256.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus weihenstephanensis KBAB4]
 gi|229132364|ref|ZP_04261218.1| hypothetical protein bcere0014_13000 [Bacillus cereus BDRD-ST196]
 gi|163861569|gb|ABY42628.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Bacillus weihenstephanensis KBAB4]
 gi|228651070|gb|EEL07051.1| hypothetical protein bcere0014_13000 [Bacillus cereus BDRD-ST196]
          Length = 416

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L +      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQDNVSPSNKELFKSLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYEFSTELDGVLVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   R   + IS     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAIDARGERPLSIQISSYRLDNFVRITFTDNGTGV-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L            +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKVTSNH-SGTTFTISIP 409


>gi|150392115|ref|YP_001322164.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149951977|gb|ABR50505.1| PAS/PAC sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 784

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------------V 49
            K +   +    L       I H++ +P+  I  +L+LL+    +DE             
Sbjct: 509 KKLLEETIKYDKLKTEFFVNIAHELRTPLNVIFGALQLLELDFKQDEIEKKEALLGVDKR 568

Query: 50  MQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           ++ ++ +    +  +  +                      +       V E        +
Sbjct: 569 IKSMKQNCYRLLRLVNNIIDITKIESGYYQLELQNVDIVNVVENITMSVSEYMEIRGINL 628

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           Q     E   ++ +     +I+LNL   A      GG++ +++ + +   + S++  G  
Sbjct: 629 QFDTQVESKLIACDPDKMERIMLNLLANAIKFTESGGQIKVNMYEKEENMMISIQDTGIG 688

Query: 158 ARFPEK---FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    F +    +     + +   I    V  L      ++  +            
Sbjct: 689 IPEDRINVIFERFSQVDRSLTRSHEGSGIGLSLVKSLVELQGGQITVKSKIGQGSEFIIA 748

Query: 213 LE 214
           L 
Sbjct: 749 LP 750


>gi|323493472|ref|ZP_08098594.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
 gi|323312295|gb|EGA65437.1| CheY-like receiver protein [Vibrio brasiliensis LMG 20546]
          Length = 1052

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 67/237 (28%), Gaps = 27/237 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       ++++ ++  + + H+I +P+ AI     L  +  +  +    I     SA
Sbjct: 289 LNQARSKAEEAVEVKSMFLANMSHEIRTPMNAIIGMSHLALKTELTPKQHDYISKIHNSA 348

Query: 61  IIRLKFMRLA----------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            + L  +                     +   V   + +   ++  E  + +  ++    
Sbjct: 349 SLLLGIINDILDFSKIEAGKLSIETIEFHLDDVLHNVSMVTGQKAFEKGLELIFQIDRDV 408

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
                       +I++NL   A     +G            D K E  FS++  G     
Sbjct: 409 PKVLYGDPLRLGQIIINLVNNAVKFTEQGEITVHVTRTPHSDQKVELKFSVQDTGIGM-S 467

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           PE+  ++                   +       L       +  E I       + 
Sbjct: 468 PEQSDKLFSAFTQADGSTTRRYGGTGLGLSICRRLVELMGGSIQVESILGQGSEFTF 524


>gi|323143396|ref|ZP_08078081.1| nitrogen regulation protein NR(II) [Succinatimonas hippei YIT
           12066]
 gi|322416801|gb|EFY07450.1| nitrogen regulation protein NR(II) [Succinatimonas hippei YIT
           12066]
          Length = 362

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/225 (11%), Positives = 60/225 (26%), Gaps = 26/225 (11%)

Query: 14  LVAL-LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMR--- 68
           L A  L   + H+I +P+G I  + +LL+   G   ++    ++    +      +    
Sbjct: 129 LAARDLIRNLAHEIKNPLGGIRGAAQLLEMTFGKAADITDYTKVIIEQSDRLKTLVDNLL 188

Query: 69  --LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLF 123
                      +    +  +  +         R +  +     +L  +     +  +N+ 
Sbjct: 189 GPQRPNPMSLANIHYVVEKVLSLEAMATKDKIRFEKDYDPSLPELMLDVDAMQQTFINII 248

Query: 124 MVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             A  +                    + I+          S+  NG          +I  
Sbjct: 249 SNAIQALTESNTERPLIKIQTRAVNGMVINGFKYPTSICVSITDNGPGIPES-IMPKIFY 307

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             V S    + +       +   +   +  E         S +L 
Sbjct: 308 PMVTSRSKGNGLGLSIAQSIVERHNGTIECESHKGK-TTFSVILP 351


>gi|196228679|ref|ZP_03127545.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196226960|gb|EDY21464.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 916

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 28/235 (11%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS-------MS 59
                M+ +  L   I HD+ + +  I  S++LL     +   ++++             
Sbjct: 540 LRAQRMESIGTLAGGIAHDLNNVLSPIVMSVDLLKMKTDDPACLEVLETVETSARRGADM 599

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116
               L F R   G    V     L ++++++ D    +  +++S   +  ++  +     
Sbjct: 600 VQQVLSFARGVEGQRIIVQPKHLLKEVQKIVADAFPKNIELKLSQKPDLWNVLGDPTQLH 659

Query: 117 KILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGNLARFP 161
           ++LLNL + A  ++P GG++                     +    I  ++ NG      
Sbjct: 660 QVLLNLCVNARDAMPEGGRITIAAENMTVDEPYASMHHDAKAGPHVIIQVQDNGTGM-PS 718

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I D    +        +     + +   +   +L              L 
Sbjct: 719 ALIEKIFDPFFTTKELGKGTGLGLSTSLAIVKSHGGFILVSSEVGRGSTFKIHLP 773


>gi|254422726|ref|ZP_05036444.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
 gi|196190215|gb|EDX85179.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Synechococcus sp. PCC 7335]
          Length = 497

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 61/212 (28%), Gaps = 22/212 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIE--DEVMQLIRLSSMSAIIRLKFM-------RLAFGYT 74
           H++ +PI  I   LEL+DE   +   E ++L+          +  M       R  F   
Sbjct: 283 HELRTPITIIQGHLELMDEENPQECRETIKLVMDELDRMGRLVSDMLLLAKSERPNFLQL 342

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
            +V+      +I             ++V   G  +   ++    +LNL   A        
Sbjct: 343 ETVEIDAFAEEIFTKATALAQRHWILKVEGKGNVVCDRQKLTGAILNLLKNAVQHTQGTD 402

Query: 135 KVTISV-------QDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDIQ 182
            + +           + ++  F ++  G      +   +I          +   D   + 
Sbjct: 403 TIELGCYSKKDADHPNHDQVRFWVRDTGEGISPAD-QQRIFSRFARGQNYQRRSDGSGLG 461

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +A  +  ++               L 
Sbjct: 462 LAITAAVAEAHGGQVTLHSKVGQGTTFWLDLP 493


>gi|167566984|ref|ZP_02359900.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis EO147]
          Length = 749

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                   +S  L   L + + H++ +P+  I+  +E+L          Q I     SA 
Sbjct: 382 RDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPAGGALQQQAIDAIDRSAR 441

Query: 62  IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              +               +RL       V  +  +            +D  V  +    
Sbjct: 442 SLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQAEGLDLTVDCALETC 501

Query: 108 KID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT- 165
            +        ++L NL   A    PRGG+VT+S+  + +     +   G           
Sbjct: 502 IVSGDGERLRQVLSNLLSNAFKFTPRGGRVTVSLMRTDSHATLVVADTGQGISPEFLPHV 561

Query: 166 ----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
               +  DG+  S+     +    V  +A  +  ++             +  L 
Sbjct: 562 FEAFRRADGSPASSRRGLGLGLSIVRHIAELHGGKVEVASAGKRLGTTFTVTLP 615


>gi|156935053|ref|YP_001438969.1| phosphate regulon sensor protein [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533307|gb|ABU78133.1| hypothetical protein ESA_02904 [Cronobacter sakazakii ATCC BAA-894]
          Length = 437

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 63/215 (29%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E  + +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMHEQTLEGPLREKALHTMREQTFRMEGLVKQLLTLSKIEA 268

Query: 80  LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              +   E +    +                    +V    + +    +    + NL   
Sbjct: 269 APAMQLNETIDVPMMLRVVEREAQTLSQQKQTFTFEVDPQLKVLGNDEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  +   N   FS+   G      E   ++ +                
Sbjct: 329 AVNHTPAGTHITVRWEHVANGARFSVADTGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V      +  RL  E         S LL 
Sbjct: 388 GLGLAIVKHALTHHDARLEIESTPGKGTTFSFLLP 422


>gi|154302225|ref|XP_001551523.1| hypothetical protein BC1G_09793 [Botryotinia fuckeliana B05.10]
 gi|150855567|gb|EDN30759.1| hypothetical protein BC1G_09793 [Botryotinia fuckeliana B05.10]
          Length = 1187

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 62/208 (29%), Gaps = 11/208 (5%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L S I H++ SP+  I  S+ELL +  I       +      +   L  +     Y    
Sbjct: 677 LISSISHELRSPLQGIQGSIELLQDTQISTYQRSALETIGHCSTTLLDTLTNVLDYAKIN 736

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP------ 131
           +        ++V    +AV   V        +       +IL+N+F  A           
Sbjct: 737 NFTTAQKTEQRVDSAPLAVILDVDHKSNWTFLTQPGAWKRILMNIFGNALKYTTSGLIKV 796

Query: 132 ---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYV 186
                   + + + ++     ++   G          QI     +         +    V
Sbjct: 797 SLGCKTVTSKNSRVNQALVTLTISDTGRGIAEDFLKRQIYTPFAQEDSLTPGAGLGLSIV 856

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      ++    I     V++ +L+
Sbjct: 857 RQIVGALDGKIDVFSIQGAGTVVNVVLK 884


>gi|170734548|ref|YP_001773662.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
 gi|169820586|gb|ACA95167.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           MC0-3]
          Length = 768

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 59/234 (25%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                   +S  L   L + + H++ +P+  I+  +E+L   G      Q +     SA 
Sbjct: 381 RDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTGDHALQHQAVDAIDRSAR 440

Query: 62  IRLKFMRLA-----------FGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
              + +                    VD +    D          +    ++        
Sbjct: 441 SLTRMVGDILDASSLATGKLRLDATPVDVVRLFSDQVGTFQTAASSAGILLEFDCDASAC 500

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +S +  ++   L      A    P GG VT+ +       + ++   G           
Sbjct: 501 IVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLARDGGHAVLTVADTGQGIATEFTPYV 560

Query: 167 IVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                              +    V  +A  +   +       D     +  L 
Sbjct: 561 FDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGSVTVASAGRDRGTTFTVTLP 614


>gi|94263414|ref|ZP_01287228.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|94264197|ref|ZP_01287993.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455372|gb|EAT05573.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456250|gb|EAT06384.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 520

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 64/241 (26%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLI------R 54
                 +  + A+  L   + HD  + +  I    E  LL+    +    +L       R
Sbjct: 138 QAQLNQAQKMEAIGTLAGGVAHDFNNLLTVIKGYAEIALLEIKPDQPGHAELQGIMQAAR 197

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            S+      L F R        +D    +  + Q++   I  D  +      +   +  +
Sbjct: 198 RSAELTRQLLAFARKQTVKPQKLDLNETVEGMLQMLRRLIGEDIELTWQPGADLWPVRID 257

Query: 115 RAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGN 156
             ++   L  +   +                  L      T +          S+  NG+
Sbjct: 258 PGQVDQILANLCVNARDAVGDQGRIGIATANLVLDEDYCATHAGFTPGEYVQLSISDNGS 317

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E    I +    +        +    V  +  +N+  +          +    L 
Sbjct: 318 GM-DTETRKHIFEPFFTTKEVGKGSGLGLATVYGIVKQNEGFINFYSEPGQGTIFRIYLP 376

Query: 215 K 215
           +
Sbjct: 377 R 377


>gi|293369955|ref|ZP_06616522.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634873|gb|EFF53395.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 479

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 301

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 302 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 361

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +  +N     ++  G    
Sbjct: 362 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 422 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 478


>gi|291619234|ref|YP_003521976.1| EnvZ [Pantoea ananatis LMG 20103]
 gi|291154264|gb|ADD78848.1| EnvZ [Pantoea ananatis LMG 20103]
 gi|327395563|dbj|BAK12985.1| osmolarity sensor protein EnvZ [Pantoea ananatis AJ13355]
          Length = 454

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E+++E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMNEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
            T   D    LG++      +    +   ++             + L NL + A      
Sbjct: 295 QTELADLNSVLGEVVAAESGYEREIENAVMAEELMLEINPLSIKRALANLVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G   +       F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGRELH--RAWFQVEDDGPGIKPDQLAHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              ++  L     +   + + A L 
Sbjct: 413 IDAHQGSLEIGDSERGGLRIRAWLP 437


>gi|291287961|ref|YP_003504777.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885121|gb|ADD68821.1| multi-sensor hybrid histidine kinase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 1005

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK       +    +   + + H+I +P+  I    +L+ ++ + ++    +R    SA
Sbjct: 259 LAKARDAAEQASKAKSSFLANMSHEIRTPLNGIIGLTKLMLDLELSNKQKDYMRKIDRSA 318

Query: 61  IIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              L  +                        SV   I      ++ E  + +   +    
Sbjct: 319 KALLGILNDVLDLSKIEAGKLRIDNHDFVFESVFKSIDDLFTIKIEEKGLELFFEIDPEI 378

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
                       ++L+NL   A                 + DS    +FS++  G     
Sbjct: 379 PQHLTGDPLRIKQVLINLVSNAVKFTDEGEIHIKAEVTEITDSDISILFSVRDTGVGIPA 438

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E   +I               +   +       L       +  E   +   + S  L
Sbjct: 439 NEL-EKIFTAFTQVDETSTRRYEGTGLGLAITKNLVSMMGGTVTVESDINMGSIFSFKL 496


>gi|283778882|ref|YP_003369637.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283437335|gb|ADB15777.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 262

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 60/234 (25%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +A  +   L    L +L      + H+I +P+  I    + L       +  + + +   
Sbjct: 30  LAAELPKLLEQQKLASLHAFAYGLSHEINNPLANIATRAQTLLADEPHPDRKRRLAVIVA 89

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVS 103
            A    + +     +            +  ++ + +   +                 + +
Sbjct: 90  QAFRAHEMLADVMLFAKPPRLNRETVLVFSLLRELVDQFQSEAAAQQTSLTLVPPGDETA 149

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                          +  +   A  ++   G VT+ +  +       ++  G      E 
Sbjct: 150 EQVAISADPVHLKMGVQAMLRNALEAVAHQGAVTLQLCVASKTIAIVVRDTGPGL-SEEA 208

Query: 164 FTQIVDGNVESTIDSHDIQFYYVI--LLAHENKIRLLPEIIDDHNVVLSALLEK 215
              + D           +         +A  +   +  E +       +  L +
Sbjct: 209 REHLYDPFYSGREAGRGLGLGLSKTWRIAELHGGAIAAENLAPTGCQFTLTLPR 262


>gi|260773908|ref|ZP_05882823.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii
           CIP 69.14]
 gi|260610869|gb|EEX36073.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio metschnikovii
           CIP 69.14]
          Length = 855

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 68/239 (28%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+       S  L A   +++ H++ +P+  I  + +LL +  +  E  +L+ +   S 
Sbjct: 469 LAREQAE--ESARLRADFLAKMSHELRTPLNGILGASQLLKQNSLTQEQQELVNVLCSSG 526

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              L  +     ++        + + +  +   ++  +R+                 +  
Sbjct: 527 EHLLAVLNDILDFSKIEQGKFLIQNSDFPVVAMVSAIRRIYNPLCKEKGLELIIECAIEP 586

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFP 161
                       +IL NL   A     +G          +   ++ + S++  G      
Sbjct: 587 EIRLHSDQIRLNQILFNLLSNAVKFTHQGSICIKLALIQQGGIDKLMISIEDTGIGIAAT 646

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I                   +    V  L       +  +    +      L  
Sbjct: 647 DL-QRIFAPFVQAESTTTREYGGSGLGLSIVSSLVELLHGEITVKSEVGYGTRFDLLFP 704


>gi|237717986|ref|ZP_04548467.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
 gi|229452627|gb|EEO58418.1| two-component system histidine kinase [Bacteroides sp. 2_2_4]
          Length = 482

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +  +N     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|257792573|ref|YP_003183179.1| Osmosensitive K channel His kinase sensor [Eggerthella lenta DSM
           2243]
 gi|317488865|ref|ZP_07947395.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Eggerthella sp. 1_3_56FAA]
 gi|325832785|ref|ZP_08165548.1| putative histidine kinase KdpD [Eggerthella sp. HGA1]
 gi|257476470|gb|ACV56790.1| Osmosensitive K channel His kinase sensor [Eggerthella lenta DSM
           2243]
 gi|316911939|gb|EFV33518.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Eggerthella sp. 1_3_56FAA]
 gi|325485924|gb|EGC88385.1| putative histidine kinase KdpD [Eggerthella sp. HGA1]
          Length = 926

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 68/242 (28%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEVMQ 51
            + +   +    L A L   I HD+ +P+ +I    ++L           +  +  ++  
Sbjct: 667 RRRMEMRMEKETLRANLLRTISHDLRTPLTSISGDADMLLHDRGALSAQQKEHLYRDIHD 726

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTG 106
                       L   R+  G     +    + D+       V          V++    
Sbjct: 727 DACWLVTLVENLLSITRIDNGTLQLAEQPELVADVVREALQHVDRRAGRRRVDVELEDEL 786

Query: 107 EKIDLSRE-RAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161
              D+      ++++NL   A +  P  G++       V+  +     ++   G      
Sbjct: 787 LMADMDARLIVQVIINLVNNAVSYTPADGRIVVSARRVVEHDRPRVRIAVADEGPGISEE 846

Query: 162 E---KFTQIVDGNVESTID-------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           +    F    +G+                +       +   +   L    ++ H    S 
Sbjct: 847 DRKHIFDMFYNGSTGRRGGKSGDFKRGMGLGLSLCRSIVEVHGGTLDVRNVNPHGSEFSF 906

Query: 212 LL 213
            L
Sbjct: 907 TL 908


>gi|255693955|ref|ZP_05417630.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620229|gb|EEX43100.1| putative two-component sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 482

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +  +N     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENMIELYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|197104163|ref|YP_002129540.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196477583|gb|ACG77111.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 631

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
                 S  L AL  L   + HD  + + AI  SLEL       +       +    L++
Sbjct: 247 EQQLRQSDKLRALGTLAGGVAHDFNNLLTAIVGSLELASKRLDRDPETVRRYLDNAALAA 306

Query: 58  MS----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                     L F R        VD    +  +  ++   +     V+     +    S 
Sbjct: 307 QRGASLTQRLLGFSRRTDSRLAVVDVAAAMTGMRDLLSRTLGGGVEVEWRIAADLWPTSV 366

Query: 114 ERAKILLNLFM---VAHASLPRGGKVTISVQDS--------------KNENIFSLKINGN 156
           E  ++ + +      A  ++P GG +TI+ ++                +  +  +   G 
Sbjct: 367 EPDQLEVAILNLAINARDAMPDGGVITIAARNVSLPAEADLERGLTAGDYVMLVIADTGE 426

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   ++++    +        +    V   A  +   L           +   L 
Sbjct: 427 GM-PPELLERVLEPFFTTKPVGKGTGLGLPMVYGFAQRSGGTLSIRSTPGQGTEVVMYLP 485

Query: 215 K 215
           +
Sbjct: 486 R 486


>gi|206967910|ref|ZP_03228866.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|229068950|ref|ZP_04202244.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185]
 gi|229078584|ref|ZP_04211142.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2]
 gi|206736830|gb|EDZ53977.1| sensor histidine kinase [Bacillus cereus AH1134]
 gi|228704728|gb|EEL57156.1| hypothetical protein bcere0023_12500 [Bacillus cereus Rock4-2]
 gi|228714234|gb|EEL66115.1| hypothetical protein bcere0025_11590 [Bacillus cereus F65185]
          Length = 466

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   E   D    +   L
Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|167756877|ref|ZP_02429004.1| hypothetical protein CLORAM_02426 [Clostridium ramosum DSM 1402]
 gi|237734587|ref|ZP_04565068.1| signal transduction protein kinase [Mollicutes bacterium D7]
 gi|167703052|gb|EDS17631.1| hypothetical protein CLORAM_02426 [Clostridium ramosum DSM 1402]
 gi|229382407|gb|EEO32498.1| signal transduction protein kinase [Coprobacillus sp. D7]
          Length = 463

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-LIRLSSMS 59
           MA+ +       +      S I H+  +P+ AI     +L E  +  E  Q    +    
Sbjct: 218 MAQQLA---KQEETRQKFISDISHEFQTPLTAIQGFANILKEEDLPKEQRQKYADIILFH 274

Query: 60  AIIRLKFMRLA---------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +       +                   Y+        +   E          +  +   
Sbjct: 275 SKRLSTLSKNMLQLTLLEREEVELEFTTYSIVEQLSRVISTQENQAILKDIEIQFEKPRK 334

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                   +   ++ +NL   A      GG +T++V+ +  E   S++  G         
Sbjct: 335 DIMVYGDEQRLEQVWINLISNAIKYTGEGGLITVTVKKASREVEVSIEDTGYGMSKEVVS 394

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +        +++ + +    V  +   +   +      D        L 
Sbjct: 395 HIFERFYREEKARSVEGNGLGLSIVKTIVDLHHGNIDVISQVDVGSTFVVKLP 447


>gi|254829515|ref|ZP_05234202.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165]
 gi|258601930|gb|EEW15255.1| sensor histidine kinase [Listeria monocytogenes FSL N3-165]
          Length = 459

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P+GG + + + +        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISKVDMTKIFD 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458


>gi|149189236|ref|ZP_01867523.1| osmolarity sensor protein [Vibrio shilonii AK1]
 gi|148836990|gb|EDL53940.1| osmolarity sensor protein [Vibrio shilonii AK1]
          Length = 439

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 66/218 (30%), Gaps = 7/218 (3%)

Query: 4   NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60
            +   +  ++    LL + I HDI +P+  I  + E++  ++  + + ++      +   
Sbjct: 215 QMAKGIQELEQDRTLLMAGISHDIRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEII 274

Query: 61  IIRLKFMRLAFGYTG-SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
              + +++     +   +       DI      +    +   ++   +         + +
Sbjct: 275 GQFMDYLKPVNTQSFEPMSLNDISSDIVSSEGGYEIQIEYAPMATIKDIEGSPIAIKRAI 334

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
            NL + A        KVT  +         +++ NG      +    F     G+     
Sbjct: 335 TNLVVNAVRYGNGWVKVTTGMTADNKLAWVTIEDNGPGIEESQIGRLFEPFTRGDTARGS 394

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +    V  +  ++   +         +       
Sbjct: 395 EGTGLGLAIVKRIISQHHGSVSISNRSAGGLKAQVSFP 432


>gi|50084548|ref|YP_046058.1| sensory kinase (soluble) in two-component regulatory system
           [Acinetobacter sp. ADP1]
 gi|49530524|emb|CAG68236.1| sensory kinase (soluble) in two-component regulatory system
           [Acinetobacter sp. ADP1]
          Length = 369

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 65/232 (28%), Gaps = 28/232 (12%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           +    +   L   + H+I +P+G I  + +LL     + +  +   +             
Sbjct: 132 IQQHQVARQLIRGVAHEIKNPLGGIRGATQLLARSLNDPKYAEFTDIIINEVDRLRNLAD 191

Query: 69  LAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
              G         V+    L  +  +I +      ++   +     D+  +R +++  + 
Sbjct: 192 TMLGSRQLPSYEDVNIHEPLERVRSLIVNQTKKKIKIIRDYDLSLPDVKADRDQLIQVML 251

Query: 124 MVAHASLPRGGKVTISVQDSKNE---------------------NIFSLKINGNLARFPE 162
            ++  ++    +      + + +                         ++ NG      +
Sbjct: 252 NISVNAIQAITENKEFFVEHEPQLMLRTRIQRLVTINGVLNRSAVRIDIEDNGPGI-PED 310

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V        +       + H++   +  + I     V S  L 
Sbjct: 311 ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSIPGK-TVFSLYLP 361


>gi|16804620|ref|NP_466105.1| hypothetical protein lmo2582 [Listeria monocytogenes EGD-e]
 gi|16412070|emb|CAD00660.1| lmo2582 [Listeria monocytogenes EGD-e]
          Length = 459

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P+GG + + + +        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISKVDMTKIFD 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458


>gi|47096765|ref|ZP_00234348.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|224503625|ref|ZP_03671932.1| hypothetical protein LmonFR_14163 [Listeria monocytogenes FSL
           R2-561]
 gi|254900964|ref|ZP_05260888.1| hypothetical protein LmonJ_14156 [Listeria monocytogenes J0161]
 gi|254913822|ref|ZP_05263834.1| sensor histidine kinase [Listeria monocytogenes J2818]
 gi|254938211|ref|ZP_05269908.1| sensor histidine kinase [Listeria monocytogenes F6900]
 gi|47014851|gb|EAL05801.1| sensor histidine kinase [Listeria monocytogenes str. 1/2a F6854]
 gi|258610823|gb|EEW23431.1| sensor histidine kinase [Listeria monocytogenes F6900]
 gi|293591839|gb|EFG00174.1| sensor histidine kinase [Listeria monocytogenes J2818]
          Length = 459

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 65/232 (28%), Gaps = 20/232 (8%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +   L   +       + + H++ SP+ ++     LL    + ++              
Sbjct: 227 KMASELEKSEAARQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAEYLTVLSEETT 286

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------- 115
           RL  +        S+D    L   E V              W+  + +L+          
Sbjct: 287 RLSSLTKQLLTLASLDQESELRKKEPVHLAKQWRQLIQMTEWSWREKELTINLDLADVNY 346

Query: 116 -------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++  NL   A    P+GG + + + +        ++ +G      +    F 
Sbjct: 347 TGDAELLYQVWSNLLTNAIKFTPQGGNIQVRLYEDTTNVFVEVQDSGVGISKVDMTKIFD 406

Query: 166 QIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    + +      S  +       +   +   +  +   +     +  L K
Sbjct: 407 RFYKANESRTREEGSSGLGLSICQKIITLHHGEVTVQSSLEKGTTFTVKLPK 458


>gi|330501102|ref|YP_004377971.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           NK-01]
 gi|328915388|gb|AEB56219.1| alginate biosynthesis sensor protein KinB [Pseudomonas mendocina
           NK-01]
          Length = 598

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 60/212 (28%), Gaps = 21/212 (9%)

Query: 23  CHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            H++ +PI  +H +  LL E            +   V + +          L F R   G
Sbjct: 387 SHELRTPITGMHMAFSLLRERLSLPSSGREQELMRTVDEEMHRLVQLIDDLLNFSRYQNG 446

Query: 73  YTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLFM--- 124
                     L ++ +             +  +          LS + A++   +     
Sbjct: 447 MQTLQRRPCDLAEMIRQAPQRFVEKTAEREVTLVCEVHEPLPRLSLDAAQLERLIDNLID 506

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQ 182
            A      G +V + V+    + I S++ +G      E+  +I +  V+         + 
Sbjct: 507 NALRYSNPGDEVRLQVRRHGEQVIVSVQDDGEGI-PFEQQARIFEPFVQVGRRKGGVGLG 565

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +  +L               L 
Sbjct: 566 LALAREIVQLHGGQLSVHSRPGEGSTFYFSLP 597


>gi|330466349|ref|YP_004404092.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
 gi|328809320|gb|AEB43492.1| stage II sporulation protein E [Verrucosispora maris AB-18-032]
          Length = 1183

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 50/216 (23%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIR-----------LKFM 67
           + + H+  +P+  +   LE +L +  + +   Q + +   + +                 
Sbjct: 318 ANVSHEFRTPLTLVLGPLEEMLADPELPEAYTQRLTVMHRNGLRLLKLVNTVLDFSRLES 377

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                +    D     G +               V                  KI+LNL 
Sbjct: 378 GRLAAHYEPTDLADYTGRLASTFRSATERTGVRLVVDCPPLAEPVYVDQDMWEKIVLNLV 437

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV--DGNVESTIDS 178
             A      G                 +   G      E    F +     G    + + 
Sbjct: 438 SNAVKFTFDGEIQIRVRPVDGA-ARLEVTDTGVGIHPDELPHVFERFHRVPGVRSRSHEG 496

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I    V  L   +  ++      D     +  + 
Sbjct: 497 TGIGLALVRELVEMHGGQVSASSQVDKGSTFAVTIP 532


>gi|296131357|ref|YP_003638607.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
 gi|296023172|gb|ADG76408.1| integral membrane sensor signal transduction histidine kinase
           [Cellulomonas flavigena DSM 20109]
          Length = 370

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 21/232 (9%)

Query: 4   NICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSA 60
           ++   L     L   L + + H+I +P+  +   LE +++    +  E + L+R  +   
Sbjct: 137 SMAARLQEGERLRGRLLADVAHEIRTPVATLTAYLEAIEDGVQDLGAETVALLRDQASRL 196

Query: 61  IIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                 +                      +    +    E        ++   +    ++
Sbjct: 197 TRLSDDLTAVTRAESGDLALDREHVAPGDLVAAAVAASRERAAERGVDLREDSSASLPEV 256

Query: 112 SRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
             +R   A++L NL   A    P GG VT+    +  +   +++  G      +    F 
Sbjct: 257 LVDRLRLAQVLDNLVTNALRHTPPGGTVTVGAASAGRDVTLTVRDTGEGIAAEDLPHVFE 316

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
           +    +           I     + L H +   L             +  L 
Sbjct: 317 RFYRADTARDRAHGGSGIGLAICLALVHAHGGTLSAASPGPGAGSTFTVTLP 368


>gi|302557886|ref|ZP_07310228.1| His Kinase A (phosphoacceptor) domain-containing protein
           [Streptomyces griseoflavus Tu4000]
 gi|302475504|gb|EFL38597.1| His Kinase A (phosphoacceptor) domain-containing protein
           [Streptomyces griseoflavus Tu4000]
          Length = 594

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 61/216 (28%), Gaps = 18/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL----- 69
           ++ S I H++ +P+  I   L+   +     +  ++  ++  +      +  +++     
Sbjct: 378 VMVSDIAHELRTPLTNIRGWLDAAQDGLAETDSALLTSLQEEAELLQHIVDDLQVLAAAD 437

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                         D +  +    +       V+  V                ++L NL 
Sbjct: 438 AGTLRLRPEDLDLRDLIKQIVSAHRATAQAGGVEIAVHAPDGLSVHADPVRLRQVLGNLL 497

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178
             A    P  G+VT+S +         +K  G+  R  +    F +      +       
Sbjct: 498 SNAIRHTPPAGRVTLSARRVAGAVAIEVKDTGSGIREADLPRVFDRFWRAEQSRSRRTGG 557

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  L   +   +          V    L 
Sbjct: 558 SGLGLSIVRQLVRAHGGDVSVASRPHVETVFLVRLP 593


>gi|228919278|ref|ZP_04082648.1| hypothetical protein bthur0011_3060 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228840385|gb|EEM85656.1| hypothetical protein bthur0011_3060 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 369

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYAMQYRVKCYLQVDGNLPTINGN 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGYLCISVEDQGFGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSIGVGTKVEIFLP 367


>gi|228950901|ref|ZP_04113024.1| hypothetical protein bthur0006_3320 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228808830|gb|EEM55326.1| hypothetical protein bthur0006_3320 [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 369

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 76/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D+L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDTLLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGYLCISVEDQGFGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSVGVGTKVEIFLP 367


>gi|217425387|ref|ZP_03456881.1| sensory box histidine kinase [Burkholderia pseudomallei 576]
 gi|217391638|gb|EEC31666.1| sensory box histidine kinase [Burkholderia pseudomallei 576]
          Length = 723

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709


>gi|218528555|ref|YP_002419371.1| histidine kinase [Methylobacterium chloromethanicum CM4]
 gi|218520858|gb|ACK81443.1| histidine kinase [Methylobacterium chloromethanicum CM4]
          Length = 632

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 27/234 (11%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMS 59
               ++ V  L   + HD  + +  I +S +LL    +  E  +            ++  
Sbjct: 254 QAQKLEAVGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAPERRERYVAAISDTVDRAAKL 313

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-- 117
               L F R          +   +  +  ++        R+          +  ++++  
Sbjct: 314 TGQLLAFARRQSLKPEVFAACDSVRALSDMMGTLTGSRIRIVTDLPEGTCFVHADQSQFD 373

Query: 118 -ILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             L+N+ + A  ++                  +             S+   G      ++
Sbjct: 374 TALVNMAVNARDAMEGEGQLTIRVLGVEGMPPIRGQAAVEGPYVAVSISDTGVGI-PGDR 432

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I +    +        +    V   A ++   +       H    +  L +
Sbjct: 433 LERIFEPFFTTKGVGQGTGLGLSQVFGFAKQSGGEVTVASELGHGATFTMYLPR 486


>gi|52141484|ref|YP_085345.1| sporulation kinase B [Bacillus cereus E33L]
 gi|51974953|gb|AAU16503.1| sporulation kinase B [Bacillus cereus E33L]
          Length = 424

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|15673418|ref|NP_267592.1| sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
 gi|12724425|gb|AAK05534.1|AE006373_13 sensor protein kinase [Lactococcus lactis subsp. lactis Il1403]
          Length = 517

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 15/209 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-----RLA 70
           + + H++ +P+ +I    ELL+              +I   S   +  ++       +  
Sbjct: 309 ANVSHELKTPLTSIKGFAELLETDSISSSDTKNFASIINKESSRLMNLVQDTLLLTKQNH 368

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                 ++    + +I Q     I                         I  NL   A  
Sbjct: 369 RIDKKKINLTTLIQNILQSSGPQINEKSLHFESQIEEITFKTNEPMVHSIFENLIENAIK 428

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVES-TIDSHDIQFY 184
             P  G++ +S+   +N+ IFS+  NG      +    F +    +     +    +   
Sbjct: 429 YTPANGQIFVSLHLEQNKVIFSVTDNGPGLSEIQKERIFDRFYRVDESRAEVSGTGLGLA 488

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213
            V     E    +    I       +  L
Sbjct: 489 IVEKNVQELHGTIDVVSILGKGTTFTVNL 517


>gi|89098509|ref|ZP_01171392.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086754|gb|EAR65872.1| sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 376

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 58/229 (25%), Gaps = 24/229 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
            +  L   L + + HD+ SP+ +I   L L+      +       +Q+I   +      +
Sbjct: 140 KAEQLKNELVTNVAHDLRSPLTSIIGYLNLINEDRYQDEVELRHYIQVITDKTAGLHSLI 199

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------- 116
             +                    + + + +AV  RVQ+   G +     E          
Sbjct: 200 DDIFEYTYMQNQQALFEKHPIDLEELMNQLAVQSRVQLEDAGMEWRQFLEGDEPPIVLGD 259

Query: 117 -----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                ++  NL   A      G  + I +  + +     +   G      E         
Sbjct: 260 GGKLIRVFENLIQNAVRYGREGKYLDIILGGTGHNVEIQVANYGPAIPGAELPHIFERFF 319

Query: 172 VESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +       +   +   +  +            L +
Sbjct: 320 RVEKSRSHFTGGSGLGLAIAKSIIELHGGTIEAKSRPGR-TAFIIRLPR 367


>gi|67920724|ref|ZP_00514243.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67856841|gb|EAM52081.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 473

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQ 51
           +A+ +   L+ +         L S I H++ +P+  +   L+  L        I+ E ++
Sbjct: 236 LAQTLQTTLTDLSHAWEDQRQLVSNISHELRTPLTVVSGYLQSTLRRGNNLTDIQREALE 295

Query: 52  LIRLSSMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +   I  L+ +           + +  +V     L +IE +++ +    K     
Sbjct: 296 TASSEAERTIQLLQDLLDLARAENGRMYFHLETVVLNELLTEIEGMVDQYPTPVKISLPD 355

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160
              +         ++ LNL   A         + + +   K +    +   G        
Sbjct: 356 QLVKIKGDKNRLKQVFLNLVDNAVKYSHSSEPILLKLSQEKQQANIQVCDRGVGIPLTHQ 415

Query: 161 PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +      I    +    V  L    +  +      +     + L  
Sbjct: 416 TRIFERFYRVDEARSRNIGGTGLGLSIVKTLVEGMEGTIKVISQPNQGTTFTILFP 471


>gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1343

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEV--MQLIRLSSMS 59
                  ++ M L   +   I H++ +P+  I   + E+LD V        ++ ++ ++  
Sbjct: 818  SERQKEMNEMKLRFFI--NISHELRTPLTLILAPVQEMLDRVSDRWLHKQLEHVQKNTNR 875

Query: 60   AIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--- 109
             +  +  +          F     +  +  + +   +  D +A  KR+  ++        
Sbjct: 876  LLHLVNQLMDYRRAELGVFNLKVRLTPIHDVIEKNFLFYDRLAQRKRISYNFNSNVEGRE 935

Query: 110  --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      I+ NL   A      G  VT+++Q+  +E +  +K  GN     +K  +I
Sbjct: 936  ILCDPDYMELIVNNLLSNAFKYTGEGKSVTVTLQEENHELLLRVKDTGNGIPI-DKQGKI 994

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  LA  +  R+  E  +      S  L 
Sbjct: 995  FERFYQIDNEHLGSGIGLSLVQRLADLHHGRIELESEEGAGSTFSVYLP 1043


>gi|315054893|ref|XP_003176821.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
 gi|311338667|gb|EFQ97869.1| serine/threonine protein kinase [Arthroderma gypseum CBS 118893]
          Length = 2384

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 29/238 (12%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
            N+     +    ++  + I HD+ +P+  +    ELL     +   +  V  +   +   
Sbjct: 1875 NVKLKEDAAKAKSIFLANISHDLRTPMTGVIGLSELLKATKLDAKQDVYVESIRVCADTL 1934

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTG 106
              +    +  +    G +   I   +                  +    V+  V +    
Sbjct: 1935 LTLINDILDFSKLEAGKMKVSIVPINLRQTIAEVVRALRYTHRDKGLTTVEDLVSIDPNL 1994

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPE 162
              +       +I +NL   ++   P G     ++ +            +   G      +
Sbjct: 1995 LVMGDPVRLHQIFMNLLSNSYKFTPAGSVTVRAIIEEDTPEKIRMTCKVADTGIGISEEQ 2054

Query: 163  KFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
               ++             +     +       +  +    R+  +  +     ++  L
Sbjct: 2055 LV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGRIWLQSKEGEGTTVTFTL 2111


>gi|307718036|ref|YP_003873568.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Spirochaeta thermophila DSM 6192]
 gi|306531761|gb|ADN01295.1| sensory histidine kinase in two-component regulatory system with
           AtoC [Spirochaeta thermophila DSM 6192]
          Length = 616

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 62/204 (30%), Gaps = 14/204 (6%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL--------AFGYTG 75
           H+I +P+G I   +E+L    +  E+ + +            F+             +  
Sbjct: 396 HEINNPLGIISAYIEVLKLQDLSPEISRKLEKIQNEITRIQNFVSSLGRLADASRMEWGT 455

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPR 132
                +    +      F      V        + +  +     ++L+NL + +  +L  
Sbjct: 456 VDLVEMVKDVLLLFQHLFQEKRITVYTDLPETPVKIEGDAGRLKQLLINLVLNSVEALLH 515

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLA 190
           GG + I ++  + + + S+  NG+     E   +I      +     S  +       +A
Sbjct: 516 GGWIRIRLERKEGKIVLSVSDNGHGI-PKEIQDRIFRPFFSTKAGKQSTGLGLAICEHIA 574

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   +            +    
Sbjct: 575 KLHGGEIGFTSTPGEITTFTVTFP 598


>gi|332873326|ref|ZP_08441280.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           6014059]
 gi|323519818|gb|ADX94199.1| Signal transduction histidine kinase [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332738389|gb|EGJ69262.1| phosphate regulon sensor kinase PhoR [Acinetobacter baumannii
           6014059]
          Length = 452

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78
            I H++ +P+  +   +E   +    +   +       S   R+  +        +++  
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L     ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAYLDVLSKENEGSTFTAVFPK 445


>gi|240949675|ref|ZP_04754010.1| sensor histidine kinase [Actinobacillus minor NM305]
 gi|240295933|gb|EER46609.1| sensor histidine kinase [Actinobacillus minor NM305]
          Length = 616

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 63/219 (28%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL-------- 69
           L + I H++ +P+  I     +L E  +E +  + ++  ++SA+                
Sbjct: 120 LMATISHELRTPLNGIIGLSRILLEGELEPKQREYLKTINISAVSLGHIFSDIIDLEKID 179

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERAKILLN 121
                        +  +  +     ++     +   ++            +   ++++ N
Sbjct: 180 SKRIELFNKPVEFIQLINDINHFANLMAGKKEIKFHLEYAKQLPHYINVDNARLSQVIWN 239

Query: 122 LFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS-- 178
           L   A    P  G +T+ +   S +   F +  +G      E+             D   
Sbjct: 240 LLSNAVKFTPEKGDITLKINQLSPSCFQFIVIDSGIGIAKEEQDKIFNMFYQSERSDGNK 299

Query: 179 ---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       +A      L  E         +  ++
Sbjct: 300 AQGSGIGLAVSKHIAQLMGGDLTVESQLGEGAAFTLTIQ 338


>gi|166031389|ref|ZP_02234218.1| hypothetical protein DORFOR_01078 [Dorea formicigenerans ATCC
           27755]
 gi|166028794|gb|EDR47551.1| hypothetical protein DORFOR_01078 [Dorea formicigenerans ATCC
           27755]
          Length = 498

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------ 49
           M K +        L        L S I HD+ +P+  I    E + +   +         
Sbjct: 248 MRKRLKNTAE-EKLKFDKENKELISNISHDLKTPVTTIKGYAEGIMDGVADTPDKVAKYV 306

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------D 97
             +   +S   ++  +    +   T  +     +  +     D                 
Sbjct: 307 RTIYNKASEMDVLINELTLYSKIDTNRIPYNFTILSVNDYFNDCSEDLSLDLEAKNVEFG 366

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGN 156
               V    + I    +  +++ N+   +   + +        V+D  +     ++ NG 
Sbjct: 367 YFNYVEPKVKVIADPEQIKRVVHNIVNNSVKYMDKDKPKINLRVKDVGDFVQIEIEDNGK 426

Query: 157 LARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    F +    +           I    V  +  E+  ++     +     +  
Sbjct: 427 GIASKDLPNVFERFYRTDASRNSSKGGSGIGLSIVKKIIEEHGGKIWATSREHTGTTMYF 486

Query: 212 LLEK 215
           +L K
Sbjct: 487 VLRK 490


>gi|163744984|ref|ZP_02152344.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
 gi|161381802|gb|EDQ06211.1| multi-sensor hybrid histidine kinase [Oceanibulbus indolifex
           HEL-45]
          Length = 547

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 67/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           M  +I   +    + +   S + H++ SP+ +I  S+ LL       +  +   L+ +S 
Sbjct: 292 MLNDISDIIGEERMKSEFISMVSHELRSPLTSIKGSMGLLLSRAAGELPSKARALLEISH 351

Query: 58  MSAIIRLKFMRLA---------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            +A   +  +                       +            + +      +    
Sbjct: 352 RNADRLVLIINDILDLEKISTGQLEFNLEETDIAELLRETSAANSSLEQRHGVRIQVENT 411

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +         ++L N    A      G ++TI  +++ +E   S+   G      E
Sbjct: 412 DTPMQVTTDPNRVIQVLTNFLSNAAKFSKPGERITIRAEENDHELRISVSDRGQGIPASE 471

Query: 163 KF---TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +     +  D +     +     +       +      ++  +  +         L K
Sbjct: 472 EHKVFQRFADLSNSKRAEKGGTGLGLSVCKAIVENLGGKIGFDSREGFGTTFYFTLPK 529


>gi|159897332|ref|YP_001543579.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890371|gb|ABX03451.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 399

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 65/234 (27%), Gaps = 38/234 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           L + + H++ +P+ +I   +E L           ++  +     + +  +  +       
Sbjct: 162 LVANVSHELRTPLASIKLLVETLATQPPPELAQRMLGQVDTELDAVMQLVDELHELSQIE 221

Query: 74  --------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                     +    I     +++       D RV V+   +  ++  +R +I   L  +
Sbjct: 222 SGRTALQLQPTPVEDIVERANDRIQPQAKRKDLRVAVTIAPDLPEVYVDRDRISQVLLNL 281

Query: 126 AHASLPRG-------------------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            H ++                        ++  ++ S    I ++   G      E   +
Sbjct: 282 LHNAVKWTDAGGTITIEAGLRSRSELGHHLSRMLEPSNRWVIMAIHDTGAGI-PAEAIPR 340

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +            +    +    V  L   +   +     +      +  L 
Sbjct: 341 IFERFYKVDRARTRGVGGTGLGLAIVKHLVEGHGGVVWVASSEGRGSTFTVALP 394


>gi|159897466|ref|YP_001543713.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890505|gb|ABX03585.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 534

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 58/235 (24%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLS 56
           ++I          +   S + H++ +P+  I      L           + E++  I   
Sbjct: 282 RDITKQKRDEQQQSTFISVMSHELKTPVAIIKGYASTLSRTDVKLNKATKAEMLTGIEEE 341

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +             +    D      D+       +      Q+ +  + 
Sbjct: 342 ADRLARLIGDLLEVSRMQAGGLRLHPAPFDLSELAADVVAAFAATVDQRFEFQLRFEPKL 401

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  ++ +I + L      A    P GG + +         +  +   G      E   
Sbjct: 402 PHVYADQERIRMVLSNLISNAIKYSPEGGVIRLGGWPENGHVLSYVTDEGIGIAQEELP- 460

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++                   +  Y    +   +  R+  +            L 
Sbjct: 461 KLFTPFYRVDNRLARETQGAGLGLYLTKSIIEAHGGRMWADSTVGKGSRFYWTLP 515


>gi|194466633|ref|ZP_03072620.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri 100-23]
 gi|194453669|gb|EDX42566.1| integral membrane sensor signal transduction histidine kinase
           [Lactobacillus reuteri 100-23]
          Length = 491

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 60/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------- 50
           M   +   +   +D  +   S + H++ +P+  I   LE+L     +D  +         
Sbjct: 246 MFNEMLDRMQRYIDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWIKDDPKVLDDSIKATL 305

Query: 51  ---QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105
              + ++      +   +  ++   +      +  +          +  D   ++     
Sbjct: 306 IETRRMKNLVQEMLDLSRAEQVEINFRNQHTIVNDVVHQVYNNFKMLYPDFTFRLDDDLK 365

Query: 106 --GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE 162
                        ++L+ L   A        K    +           ++  G     PE
Sbjct: 366 EPIMVDIYRDHLEQVLVILCDNAVKYSTDDHKEIHIILSRGMNTVEIGIQDFGEGI-SPE 424

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ D               + +       L       +  E       +   +L 
Sbjct: 425 NVKRVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSVGAGSLFRIILP 482


>gi|39933660|ref|NP_945936.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39647506|emb|CAE26027.1| sensor histidine kinase with PAS/PAC and Response regulator
           receiver domains [Rhodopseudomonas palustris CGA009]
          Length = 913

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------Q 51
            ++      +  + A+  L   + HD+ + +  I   +E+L +   +   +        Q
Sbjct: 523 KESERQLRQAQKMQAIGQLTGGVAHDLNNILTVITGGIEILADGVSDRPGLKDVAAMVDQ 582

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            +  +S      L F R       S+D    + D  +++   +     + V    +    
Sbjct: 583 AVTRASDLTHGLLSFSRKQPLQPRSIDVNALMLDTVKLLRPTLGAGIEIDVEPAPDLRPA 642

Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153
             + +++   L      A  ++   GK                      +    + ++  
Sbjct: 643 LADPSQLGSALINLAINARDAMKGNGKLLLETGNVDLDQAYAAQHDEVSAGRYVMLAVSD 702

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G          ++ +    +    +   +    V     ++   +     + H   +  
Sbjct: 703 TGCGIPAS-IRDRMFEPFFTTKAVGEGTGLGLSMVYGFVKQSGGHIELYSEEGHGTTIRL 761

Query: 212 LLE 214
            L 
Sbjct: 762 YLP 764


>gi|238785376|ref|ZP_04629363.1| hypothetical protein yberc0001_15290 [Yersinia bercovieri ATCC
           43970]
 gi|238713703|gb|EEQ05728.1| hypothetical protein yberc0001_15290 [Yersinia bercovieri ATCC
           43970]
          Length = 921

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSPHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSHHQIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            + + ++ +     ++ +NL   AH        + I            +  NG      +
Sbjct: 769 DKMVLINCDGSLLERVFINLLENAHKYAGNVALLGIRAVVQGEWLNVEVWDNGPGVTPGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   D        L 
Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQDGGASFHFTLP 883


>gi|114561509|ref|YP_749022.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella frigidimarina NCIMB 400]
 gi|114332802|gb|ABI70184.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella frigidimarina NCIMB 400]
          Length = 345

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 69/230 (30%), Gaps = 22/230 (9%)

Query: 5   ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
              N+ +    A  L   + H+I +P+G +  + +LL       E+ +   L    A   
Sbjct: 116 QQLNMDAQQQAAQFLVRNLAHEIKNPLGGLRGAAQLLSRELDSPELKEFTSLIIEQADRL 175

Query: 64  LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---R 115
              +               +    +  + +++E  +  +  ++  +     D+  +    
Sbjct: 176 RNLVDRLLGPQRPTQHTEHNIHQVIQKVLKLVEMALPDNICLKRDYDPSIPDIQMDPDQM 235

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIF-----------SLKINGNLARFPEKF 164
            + +LN+   A  +L   G   +    ++++              S+  NG      E  
Sbjct: 236 QQAVLNIVQNAIQALEHCGGDIVIRTRTQHQVTIGTQRYKVVLALSIIDNGPGI-PAELM 294

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V    +   +       +A  +  R+       H       L 
Sbjct: 295 DTLFYPMVTGRDEGSGLGLSIAHNIARLHGGRIDCVSAPGH-TEFIINLP 343


>gi|322804531|emb|CBZ02082.1| two component system histidine kinase [Clostridium botulinum H04402
           065]
          Length = 417

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 296

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + +++  ++++N+   A    P  G++ +      +    S+K +G      +  
Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411


>gi|314936382|ref|ZP_07843729.1| sensor protein SrrB [Staphylococcus hominis subsp. hominis C80]
 gi|313655001|gb|EFS18746.1| sensor protein SrrB [Staphylococcus hominis subsp. hominis C80]
          Length = 588

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 57/219 (26%), Gaps = 23/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   +      +  +       
Sbjct: 364 ANVSHELRTPISLLQGYTESIVDGIVTEPNEIKESLSIVLDETKRLNRLVNELLNVARMD 423

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKILLN 121
                    +  ++ L    Q+     A D  + +               +    ++L N
Sbjct: 424 AEGLTINKEIQPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNYDADRIDQVLTN 483

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTI 176
           L   A      G  +TI+        I ++   G+                         
Sbjct: 484 LIDNATRYTHPGDSITITANKDSQYQILNINDTGSGIAPEHLDHVFDRFYKVEASRTRGK 543

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +  +   ++  E+   +  E   +        L K
Sbjct: 544 QGTGLGLFISKMIIQEHGGIISVESTVNKGTTFIIKLPK 582


>gi|301167704|emb|CBW27287.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 628

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 72/241 (29%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  +    L++    +L  + + H+I +P+  I     LL +  +     +++ + +   
Sbjct: 248 LEDSRNKALAAEKAKSLFLANMSHEIRTPMNGILGMASLLKDTSLNPLQEEMLSIINSCG 307

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSW 104
              L  +     ++      + +  +   ++                  I +  ++  S 
Sbjct: 308 DSLLTIINDILSFSKIESGKLSIEKVSFNLKKSVEDVTSLIANIASEKGITIHSKIDNSI 367

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLAR 159
                       +I+ NL   A    P   KV + ++ +         +FS+K NG    
Sbjct: 368 PQFLKSDIVRLKQIITNLLSNAVKFSPDEEKVFLDIKLTGCNGNIVKVLFSVKDNGIGMS 427

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+  ++                   +       LA     ++  E         S  L
Sbjct: 428 EEEQS-RLFQEFTQADEGVTRKFGGTGLGLSISSKLAKLLGGKIKVESRKGEGSKFSFEL 486

Query: 214 E 214
           E
Sbjct: 487 E 487


>gi|283851414|ref|ZP_06368695.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283573152|gb|EFC21131.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 699

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/244 (9%), Positives = 50/244 (20%), Gaps = 35/244 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H+I +P+  I     L      + +  + + L+  S  
Sbjct: 300 AREDAERANRAK--SEFLANMSHEIRTPLNGILGMTSLALMTCTDHKGREYLGLAQQSGQ 357

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105
             L  +      +        L   E    + +    +                      
Sbjct: 358 HLLGIINDILDISKIESQRFELEKAEFNPRETLENLFQTMRVEADAKGVRFDATVAPDVP 417

Query: 106 GEKIDLSRERAKILLNLFMVAHA--------------SLPRGGKVTISVQDSKNENIFSL 151
              I       +I +NL   +                +     +        +   I S+
Sbjct: 418 DCVIGDEGRLRQIYVNLIGNSIKFTTAGEVEVRVAVAATDGRREPAAMGGKGRICLISSI 477

Query: 152 KINGNLARFPEKFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +  G                  S         +       L      R+  E        
Sbjct: 478 RDTGIGIPQKNLKRIFDTFAQVSVGARYGGTGLGLSISKRLVELMGGRIWVESEPGRGST 537

Query: 209 LSAL 212
               
Sbjct: 538 FHFT 541


>gi|229177807|ref|ZP_04305180.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W]
 gi|228605598|gb|EEK63046.1| hypothetical protein bcere0005_11710 [Bacillus cereus 172560W]
          Length = 466

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   E   D    +   L
Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|228475987|ref|ZP_04060695.1| sensor protein ResE [Staphylococcus hominis SK119]
 gi|228269810|gb|EEK11290.1| sensor protein ResE [Staphylococcus hominis SK119]
          Length = 589

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 57/219 (26%), Gaps = 23/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + H++ +PI  +    E + +          E + ++   +      +  +       
Sbjct: 365 ANVSHELRTPISLLQGYTESIVDGIVTEPNEIKESLSIVLDETKRLNRLVNELLNVARMD 424

Query: 74  ------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKILLN 121
                    +  ++ L    Q+     A D  + +               +    ++L N
Sbjct: 425 AEGLTINKEIQPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNYDADRIDQVLTN 484

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTI 176
           L   A      G  +TI+        I ++   G+                         
Sbjct: 485 LIDNATRYTHPGDSITITANKDSQYQILNINDTGSGIAPEHLDHVFDRFYKVEASRTRGK 544

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +  +   ++  E+   +  E   +        L K
Sbjct: 545 QGTGLGLFISKMIIQEHGGIISVESTVNKGTTFIIKLPK 583


>gi|226947490|ref|YP_002802581.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226844514|gb|ACO87180.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 417

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 296

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + +++  ++++N+   A    P  G++ +      +    S+K +G      +  
Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411


>gi|261366316|ref|ZP_05979199.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176]
 gi|282571916|gb|EFB77451.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176]
          Length = 448

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/205 (10%), Positives = 59/205 (28%), Gaps = 15/205 (7%)

Query: 24  HDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           H++ +P+ +I    ++L     +   + E    I           + +       G    
Sbjct: 242 HELKTPMTSIIGYADVLRNLQTDPDEQREAAAAIYHEGRRLESLSQKLLALLALGGEELE 301

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKV 136
           L  +     + +   A    V +        +  +   +L  L         +   G  V
Sbjct: 302 LTDVDL-ATLWKPLRAACPTVSLETPAGHWMVRGDADLLLDLLCNLVQNGAKASAPGTPV 360

Query: 137 TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLA 190
            +  +D+    + +++ +G      E   ++ +                 +       +A
Sbjct: 361 AVLCRDNGTAVMLAVEDHGCGIPETEIR-RVTEPFYMVDKSRARKQGGSGLGLALCKRIA 419

Query: 191 HENKIRLLPEIIDDHNVVLSALLEK 215
             +   L+ E +      +   L+K
Sbjct: 420 AAHGSDLVIESVQGRGTTVRVFLQK 444


>gi|254507346|ref|ZP_05119482.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus 16]
 gi|219549806|gb|EED26795.1| nitrogen regulation protein NtrB [Vibrio parahaemolyticus 16]
          Length = 354

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 70/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL+ +  +  + +  ++    A
Sbjct: 123 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDQSLTEYTQIIIEQA 181

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +         G     +  + L  + Q++E  I     ++  +     +   + 
Sbjct: 182 DRLRNLVDRLLGPQKPGKKQHENLHLILEKVRQLVELEIGQSIVIERDYDPSLPEFLMDA 241

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 242 DQIEQALLNIVSNAGQILQGQENGKIVIRTRTVHQANIHGQRCKLAARIEIMDNGPGI-P 300

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V        +       L  +++ ++  E       + +  L 
Sbjct: 301 ADLQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIDVESWPGR-TIFTIYLP 353


>gi|187777131|ref|ZP_02993604.1| hypothetical protein CLOSPO_00676 [Clostridium sporogenes ATCC
           15579]
 gi|187774059|gb|EDU37861.1| hypothetical protein CLOSPO_00676 [Clostridium sporogenes ATCC
           15579]
          Length = 465

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 225 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 284

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 285 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 344

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + +++  ++++N+   A    P  G++ +      +    S+K +G      +  
Sbjct: 345 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 404

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 405 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 459


>gi|170756447|ref|YP_001779913.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169121659|gb|ACA45495.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 417

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 296

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + +++  ++++N+   A    P  G++ +      +    S+K +G      +  
Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411


>gi|154483121|ref|ZP_02025569.1| hypothetical protein EUBVEN_00822 [Eubacterium ventriosum ATCC
           27560]
 gi|149735929|gb|EDM51815.1| hypothetical protein EUBVEN_00822 [Eubacterium ventriosum ATCC
           27560]
          Length = 359

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 63/226 (27%), Gaps = 21/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLE-------LLDEVGIEDEVMQLIRLSSMSAII 62
               + A L   I HD+ +P+ +I  +          L E      +  +   ++    +
Sbjct: 133 EKEKMRANLLRSISHDLRTPLTSIIGASSSLTNDSLNLSEEERSHLMRNITEDAAWLLNM 192

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKIDLSRE-- 114
               + +      +         +E+++ D +        D  ++++   E + +  +  
Sbjct: 193 VENILSVTKIQDDNRTLNKSSEPLEEIMSDSVHRVKRRIPDANIKITLPDEFVLVPMDAL 252

Query: 115 -RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              ++++NL   A         + +            +K  G      +K          
Sbjct: 253 LIEQVIINLLENALKHSHSKKPIELYATIEPKTVTVYVKDYGIGISNDKKDEIFKSYTRR 312

Query: 174 STID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +          I       +   +   +  +   D   V    L K
Sbjct: 313 NNSPDRDKGMGIGLSICQTIIEAHNGEIHADTH-DEGSVFYFSLPK 357


>gi|318607816|emb|CBY29314.1| osmolarity sensory histidine kinase EnvZ [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 450

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 217 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +  V +                
Sbjct: 277 CNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVIAAESGYERVIETDLCEGEVMVDIHPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  +    F   V G+
Sbjct: 337 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A + 
Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 437


>gi|300857094|ref|YP_003782078.1| putative osmosensitive K+ channel histidine kinase [Clostridium
           ljungdahlii DSM 13528]
 gi|300437209|gb|ADK16976.1| predicted osmosensitive K+ channel histidine kinase [Clostridium
           ljungdahlii DSM 13528]
          Length = 911

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQ 51
            +     +    L + L   I HD+ SP+  I  ++  + E            + + +  
Sbjct: 668 QEKSKVEIERERLRSNLLRSISHDLRSPLAGIKGAVSTIIENGKFIPEKTKEDLLNGIYD 727

Query: 52  LIRLSSMSAIIRLKFMRL---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                       L   +          +++ +  +             D +++V    + 
Sbjct: 728 DTEWLISLVENLLSMTKFDEGNMKINKNLELVEEVVSEAVQRSSKYFKDHKIKVEVPKKL 787

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +  +     ++L+NL   A     +   + I V +S ++  F +  +G          
Sbjct: 788 IMVPMDGNLIEQVLINLIQNAAKFSKKQSFIQIKVYESVDDVFFEVIDDGIGISDKILPH 847

Query: 166 QIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +          +       +   +   +  E   +   +    + K
Sbjct: 848 IFDRFFTNGSSIADSRRGVGLGLTICKSIVEAHCGTIEAENKKEGGAIFRFNIPK 902


>gi|294673053|ref|YP_003573669.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
 gi|294472787|gb|ADE82176.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
            ruminicola 23]
          Length = 1314

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 60/208 (28%), Gaps = 15/208 (7%)

Query: 21   RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
             I H+I +P+  I   LE + + G   + +++I  ++   +  +  +            +
Sbjct: 812  MIAHEIRTPVSLIIGPLEKMLKHGTPSDDLKVIDRNAHRLLELVNQLLDFRKVEQQSLVM 871

Query: 81   IGLGDIEQVIE---------DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHA 128
                     +           F    K   V +  E      ++  I+  +      A+ 
Sbjct: 872  HFATHNIYQLMVSVSERFAPTFEQNGKHFTVEYPSEHFTAIVDKEAIIKTISNLLTNANK 931

Query: 129  SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STIDSHDIQFYYV 186
                  +++ S          S+  NG   R  +   +I     +         I    V
Sbjct: 932  YTKDQVRLSCSEDPDGEHLRISVSDNGVGIRQVD-QERIFQPFFQAEGNQPGTGIGLNIV 990

Query: 187  ILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  ++   +  +         + +L 
Sbjct: 991  KNIVTQHHGTISVDSEIGKGSTFTIILP 1018


>gi|282878423|ref|ZP_06287209.1| sensor histidine kinase/response regulator [Prevotella buccalis
           ATCC 35310]
 gi|281299409|gb|EFA91792.1| sensor histidine kinase/response regulator [Prevotella buccalis
           ATCC 35310]
          Length = 471

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 22/235 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60
           K +       D L   L   I H++ +P+ +I   LE +LD   I +   Q     S + 
Sbjct: 235 KRLQSTRQEQDILKRQLTQNIAHELKTPVASIQGYLETILDNPHINEATRQQFLQHSYAQ 294

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
             RL  +         +D    L +   V    +  +   +         ++        
Sbjct: 295 SQRLTSLLQDISTLNRIDDAPDLMEYSPVNISQMIENICKETELQMHNHHMAFVNNLPEN 354

Query: 116 ----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
                       +  NL   A      G  +T+  ++ + E  F+ + NG          
Sbjct: 355 VIIQGNQSLLYSVFRNLTDNAITYAGDGTTITLDGKEDEQEWRFTFRDNGIGVSNQHLSR 414

Query: 164 -FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +           +    +    V      +   +    ++   +     L+K
Sbjct: 415 LFERFYRVDKGRSRKLGGTGLGLAIVKNAIMLHGGSIQVHNVETGGLCFEFNLKK 469


>gi|260428060|ref|ZP_05782039.1| sensory box sensor histidine kianse/response regulator [Citreicella
           sp. SE45]
 gi|260422552|gb|EEX15803.1| sensory box sensor histidine kianse/response regulator [Citreicella
           sp. SE45]
          Length = 755

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 68/236 (28%), Gaps = 31/236 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62
           + S  + A+  L   + HD  + + AI    +LL    D+   +   +  I  ++  A  
Sbjct: 377 VQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDPDYADLVQINQNANRAAA 436

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRER 115
            +  +            ++ L D    +   +      +V  +              R+ 
Sbjct: 437 LVGQLLAFSRKQTLRPEVLDLRDTLSDLTHLLNRLVGEKVQLSLSHDPVLPTIRGDRRQL 496

Query: 116 AKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLARF 160
            ++++NL + A  ++                       +V +  +     +   G     
Sbjct: 497 EQVMMNLVVNARDAMPDGGEIVIETERRVVMEPMMRDRAVVEPGDYASVKVIDQGVGI-P 555

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +K  ++ +    +    +   +    V  +  +    +  +         + L  
Sbjct: 556 QDKLQKVFEPFYTTKRTGEGTGLGLSTVYGIVKQTGGFIFVDSTAGKGSCFTLLFP 611


>gi|258654527|ref|YP_003203683.1| histidine kinase [Nakamurella multipartita DSM 44233]
 gi|258557752|gb|ACV80694.1| histidine kinase [Nakamurella multipartita DSM 44233]
          Length = 492

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 62/229 (27%), Gaps = 20/229 (8%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-----LDEVGIEDEVMQLIRLSSMSA 60
               +   L   +     H++ +P+ A+    +L     L +    D  MQ +   +   
Sbjct: 241 ERRRNEDKLRRFIA-DASHELRTPVAAVRGYTDLYQAGALPDESAVDRAMQRMGFEARRM 299

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---------KIDL 111
              +  +               L D+ +++   +     +  +                 
Sbjct: 300 GALVDDLLTLIQADAENAVGHELVDLNELLTGVVDDAAVIDPTRIWRLAASNGGVDVFGD 359

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIV 168
                ++  NL          G   T+SV    +E   S+  +G      +    F +  
Sbjct: 360 RLRLHQVFANLLSNIRTHTAEGTVATVSVLPGLDEIAVSVSDDGPGVSDEDLDRLFDRFY 419

Query: 169 D--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +         +    V  +   +  R+         + ++ +L +
Sbjct: 420 RVDPSRSRERGGTGLGLSIVAAIVRGHGGRIAATHTPGGGLTITVVLPR 468


>gi|297568744|ref|YP_003690088.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924659|gb|ADH85469.1| multi-sensor signal transduction histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 646

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 72/221 (32%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           L + + H++ +P+ +I  + +LL +            E+++L  +S   A+   K +   
Sbjct: 422 LTAGLTHEMRNPLSSIRMNTQLLQQSTRLLQQGLQRPELVELAEISRQQALRLEKMLNDL 481

Query: 71  FGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
            GY   +   +GL  + ++          +      ++ V    +   +  +   ++  L
Sbjct: 482 LGYGKPLTLRLGLIRMGELLQSVVEAVEVEREQAGVQLAVDDQTDDCRMELDGELMIRAL 541

Query: 123 FMVAHASLPRGGKVTI---------SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             +   ++    +            +  D   + +F ++ +G      EK  ++      
Sbjct: 542 SNLVLNAIQWSPQGQTVELLARFGENSDDGAKQVVFEVRDHGPGV-TAEKRHRLFQPFFT 600

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +    V  +   +   +    +     V    L 
Sbjct: 601 TRSGGTGMGLANVKKIVEYHGGTVSAANLPAGGAVFRLELP 641


>gi|228899068|ref|ZP_04063340.1| hypothetical protein bthur0014_2960 [Bacillus thuringiensis IBL
           4222]
 gi|228963451|ref|ZP_04124610.1| hypothetical protein bthur0004_3340 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228796244|gb|EEM43693.1| hypothetical protein bthur0004_3340 [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228860509|gb|EEN04897.1| hypothetical protein bthur0014_2960 [Bacillus thuringiensis IBL
           4222]
          Length = 369

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 72/224 (32%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           M +     +     +  + + I H+I +P+ A+    ++  +    +     ++      
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPADTMSYDIMLQEIER 204

Query: 60  AIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
               +  +          +      D L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367


>gi|225870858|ref|YP_002746805.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
           subsp. equi 4047]
 gi|225700262|emb|CAW94499.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus equi subsp. equi 4047]
          Length = 441

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 59/215 (27%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAFGY 73
           +   H++ +P+ +I    E + E+  ++  ++      +   S     I    + L+   
Sbjct: 223 ANASHELRTPVTSIKGFAETIKEMPDDETSLKEDFLDIIYNESLRLERIVEHLLTLSKAN 282

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSRERAKILLNLFMV 125
              +D          +        +           +  +          ++I+LNL   
Sbjct: 283 KTPLDLTEFQLRNFLLYTGQSMRPQLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSN 342

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A      GG++ +S Q        ++   G      E   +I +                
Sbjct: 343 AIQYTDNGGRIQLSSQRVAGGVAITVADTGIGISQIEL-DRIFERFYRVNKGRSRQSGGT 401

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  L+     ++            +  L 
Sbjct: 402 GLGLAIVKELSQLLGGQITVTSQLGEGSQFTLFLP 436


>gi|253701352|ref|YP_003022541.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251776202|gb|ACT18783.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 886

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 68/251 (27%), Gaps = 38/251 (15%)

Query: 1   MAKNICFNLS-----SMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEV 49
           +A+     L      +  L +L  L   I HD  + + AI  + +L    L+      + 
Sbjct: 497 LAEQERLKLEQQLLHAQKLESLGVLAGGIAHDFNNLLTAIVGNTDLALMRLNPESPVRDN 556

Query: 50  MQLIRLSSMSAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           ++ I  ++  A    K M            ++D    + ++  ++E  ++    +  + T
Sbjct: 557 LERIEQAASRAADLAKQMLAYSGKGRFIIQTIDLNRLIREMTHMLEVSVSKKAILNFNLT 616

Query: 106 GEKIDLSRERAKILLNLFMVAHAS----------------------LPRGGKVTISVQDS 143
                +  +  ++   +  +   +                          G         
Sbjct: 617 DPLPAIEADATQLHQIIMNLIINASEAIDKESGVITIATGSMQCDRTYLNGIWVHEQLAE 676

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
                  +   G      E   +I D    +      +    V+ +   +K  +  E   
Sbjct: 677 GLYVWLEITDTGCGM-DAETVAKIFDPFFTTKFTGRGLGMAAVLGIIRGHKGAITVESYP 735

Query: 204 DHNVVLSALLE 214
                    L 
Sbjct: 736 GRGAAFKVFLP 746


>gi|188582500|ref|YP_001925945.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179345998|gb|ACB81410.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 622

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 60/224 (26%), Gaps = 20/224 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLE---------LLDEVGIEDEVM-QLIRLSS 57
            +  L AL    + + H+I  P+ AI +  +          +++       + +L     
Sbjct: 381 QAGRLAALGQFAASMAHEINQPLAAIRSYADNTAILVRRGRIEDAAENVSAIGRLTERIG 440

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSR 113
                   F R A G    V     +    +V+    A                      
Sbjct: 441 TLTRQLKGFARRASGRREPVRLADIIHGSLEVVSWRAAQAGITLDVPPPAPDLAVLGDGP 500

Query: 114 ERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
              ++++NL   A  ++       I   ++++       +  NG          Q+ D  
Sbjct: 501 RLEQVVVNLLQNALDAVTGRPDPWIAVRIEEAGERVAVEVADNGPGI-PEAVRAQVFDPF 559

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   +       +  E    L      D        L +
Sbjct: 560 FTTKSEGLGLGLAICRGIVEECGGTLGLRSGAD-GTTFRMELTR 602


>gi|162453719|ref|YP_001616086.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161164301|emb|CAN95606.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 2019

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 60/251 (23%), Gaps = 40/251 (15%)

Query: 1    MAKNICFNLSSMDLVA------------LLCSRICHDIISPIGAIHNSLELLDE------ 42
            +A      L +  L A            LL +   H++ +P+ ++     LL        
Sbjct: 1754 LASRAALALDNSRLFAEAQEAIERRDEFLLVA--SHELKTPLTSLTMQAHLLARLLPRLQ 1811

Query: 43   -----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDI 86
                     D  +QL+          +  +                          + + 
Sbjct: 1812 RAEVAPERIDAAIQLLNRQIARLAHLVNELLDVTRLNAGQLTLSRAPVDLAALAREVVER 1871

Query: 87   EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE 146
                        ++++              ++L+NL   A      G  + + V+     
Sbjct: 1872 MHQQLTDARCRTQLELDEPVMGHWDPSRMEQVLINLLSNALKYGAGGL-IHVIVRREGAR 1930

Query: 147  NIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
             +  ++ +G      +    F +              +  Y V  +   +   +  E   
Sbjct: 1931 AVLVVRDHGMGIAEADQARIFERFERAVSVRNFGGLGLGLYIVRWIVTSHGGTIRVESRP 1990

Query: 204  DHNVVLSALLE 214
                     L 
Sbjct: 1991 GAGATFIVELP 2001


>gi|160933135|ref|ZP_02080524.1| hypothetical protein CLOLEP_01978 [Clostridium leptum DSM 753]
 gi|156868209|gb|EDO61581.1| hypothetical protein CLOLEP_01978 [Clostridium leptum DSM 753]
          Length = 476

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 62/234 (26%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58
           MA+ +    +S  +     S + H++ +P+ AI    E +          + + + +   
Sbjct: 236 MAQELG---ASEKMKNDFISSVSHELRTPLTAIKGWAETMKMTGPADAVTMEKGMSIIVR 292

Query: 59  SAIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                  + +        +    +    +            +  
Sbjct: 293 ETERLSGIVEELLDFSRMQNKAMVLMMDKIDLLAELDEAVYMYRERAISENKHLDFEEPE 352

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +       ++ +N+   A    P  G V+I VQ+ +      +  NG      E 
Sbjct: 353 SISPVLADKNRMRQVFVNVIDNALKYTPEDGMVSIRVQEDEKFIHIYIVDNGCGI-PAEH 411

Query: 164 FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++ D       T     I       +   +   L  E  +     +   + K
Sbjct: 412 LPRVKDKFYKANQTQRGSGIGLAVADEIMTLHSGSLQIESEEGVGTTVIISIPK 465


>gi|126455985|ref|YP_001075878.1| sensory box histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242312376|ref|ZP_04811393.1| sensory box histidine kinase [Burkholderia pseudomallei 1106b]
 gi|126229753|gb|ABN93166.1| sensory box histidine kinase [Burkholderia pseudomallei 1106a]
 gi|242135615|gb|EES22018.1| sensory box histidine kinase [Burkholderia pseudomallei 1106b]
          Length = 723

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709


>gi|119476350|ref|ZP_01616701.1| Signal transduction histidine kinase [marine gamma proteobacterium
           HTCC2143]
 gi|119450214|gb|EAW31449.1| Signal transduction histidine kinase [marine gamma proteobacterium
           HTCC2143]
          Length = 437

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 67/220 (30%), Gaps = 22/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAIIRLKFM--- 67
             + + H++ +P+  I   LE L       D+       +  + + S      +K +   
Sbjct: 208 FVANVSHELRTPLTVITGYLETLSDNSYSLDDELRWRRAVDQMLVQSHRMESLIKDLIVL 267

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +A     ++  ++ +   + +       +  +    + + +  S E      
Sbjct: 268 SRLESLPDIAEQLPMAIRPMLEVIRDDVLTAVKSPREIIIDCDDSLQLVGNSIELQSAFS 327

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTID 177
           NL M A    P  G++TI           S++ NG             +    +   +I+
Sbjct: 328 NLIMNAAKYTPVEGEITIRWFADGQHLCLSVEDNGEGIDSHHLPRLTERFYRVDKSRSIE 387

Query: 178 --SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +   ++  L+           S L  +
Sbjct: 388 TGGTGLGLAIVKHILLHHEAELMISSQVGKGSTFSCLFPR 427


>gi|66046584|ref|YP_236425.1| PAS [Pseudomonas syringae pv. syringae B728a]
 gi|63257291|gb|AAY38387.1| PAS [Pseudomonas syringae pv. syringae B728a]
          Length = 646

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 77/246 (31%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +++       S  + A+  L   I HD  + +  I  SLELL     +    +L R    
Sbjct: 257 LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYLGA 316

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 317 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 376

Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151
                +  ++    LNL + A  ++PRGG++TI   +                      +
Sbjct: 377 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQGRDLIPGQYLSLCV 436

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   ++ D    +        +    V     ++  ++           +
Sbjct: 437 SDTGTGM-SPEVINRVFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPGQGTNM 495

Query: 210 SALLEK 215
              L +
Sbjct: 496 CLYLPR 501


>gi|29346857|ref|NP_810360.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29338754|gb|AAO76554.1| two-component system sensor histidine kinase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 785

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 50/220 (22%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNS------LELLDEVGIEDEV--------MQLIRL 55
            S  L     + + H+I +P+ AI          E L+E  +   +        +QLI  
Sbjct: 421 QSDRLKTAFLANMSHEIRTPLNAIVGFSNLLPSAETLEEEKLYSSIINQNSEILLQLIND 480

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               + I    +          +    +  I +                     +     
Sbjct: 481 ILDLSKIEAGTLEYVRQPMNLGEICRNIYQIHKDRVQEGVTLILDNQDEDLIIEEDRNRI 540

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
           A+++ N    A      G        +      F +K  G      +            S
Sbjct: 541 AQVITNFLTNAGKFTLSGEIRFGFKVN-NQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNS 599

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      ++  +    +               + 
Sbjct: 600 FAQGTGLGLAICRMIIEKIGGEIGVTSEIGKGSTFYFTIP 639


>gi|37522318|ref|NP_925695.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
 gi|35213318|dbj|BAC90690.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
            7421]
          Length = 1296

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/216 (9%), Positives = 55/216 (25%), Gaps = 21/216 (9%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            + + H++ +P+  I    ++L    +  +                  +         +  
Sbjct: 1070 AILGHELRTPLNPIIGWTQMLRRGKVGPDKHDQALEIIERNARLQTQLIDDLLDVSRIMR 1129

Query: 80   LIGLGDIEQVI---------------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                   + +                 +   V    Q+  T           +++ NL  
Sbjct: 1130 GSLRIAPQPITLAAIVVCALEAVRGLAEQKQVQLFEQLRTTAPLSADPTRLQQVVWNLLT 1189

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNV--ESTIDSH 179
             A    P GG+V + ++        ++   G        P  F +    +          
Sbjct: 1190 NAVKFTPAGGQVQVRLESGGGMARLTISDTGVGIPAEFLPHLFERFRQADTKSTREQKGL 1249

Query: 180  DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             +  + V  +   +   +  E   +      + +L 
Sbjct: 1250 GLGLFIVRHIVEAHGGTVQAESEGEGKGAAFTVVLP 1285



 Score =  101 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 54/217 (24%), Gaps = 24/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIR-----------LKFM 67
           S + H+  +P+  +   LE +L   GI     + + L+  +                   
Sbjct: 378 SNVSHEFRTPLSLLLGPLEDVLAGDGISAPTREQLTLAQRNGRRLLKLVNTLLDFSRIEA 437

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                     D       +  V    +       V                  KI+LNL 
Sbjct: 438 GRIQANFLPTDLASLTAQLVSVFRSAVEKAGLRLVIDCPPLAEAVYVDRDMWEKIVLNLL 497

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A     RG       Q +       L+  G      E   +I D           + +
Sbjct: 498 SNAFKFTLRGQIAVRLRQQTGE-VCLELEDTGVGIAAHELP-RIFDRFHRVAGVAGRSHE 555

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I    V  L   +  ++  + +       +  L 
Sbjct: 556 GSGIGLALVAELVEIHGGKVSVQSVSGRGSTFTVRLP 592


>gi|332798326|ref|YP_004459825.1| histidine kinase [Tepidanaerobacter sp. Re1]
 gi|332696061|gb|AEE90518.1| histidine kinase [Tepidanaerobacter sp. Re1]
          Length = 324

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 72/232 (31%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            ++    + +  L A   + +   H+I +PI +I   L++L +   ED+  +      +S
Sbjct: 90  KESQREKVQNESLTAEKQMAASYIHEIKNPIFSIRGFLQILHQSFSEDDKRKEYVNIIIS 149

Query: 60  AIIRLKFMRLAFGYTGSVD-------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + R+  +   F      D                    +      F   D   +   + 
Sbjct: 150 ELDRMNSLINEFLSKYKDDSFINGEDKGGTSVKKTIEEVVAFFQYGFKLKDITCKCDLSS 209

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPE 162
           +++ +  ++ +++  L      +  ++  G  ++I             +K  G   R  +
Sbjct: 210 DELVIMVDKEQLIQILINLIQNSIEAMKTGANLSIKAYAKDKTTCIVEIKDEGIGIRQDD 269

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +    +  +   +  Y    + +     +  E  +           
Sbjct: 270 I-DKIFNPFFSTKENGTGLGLYITKKIINNYGGSIYLESTEGKGTTFYLEFP 320


>gi|253567089|ref|ZP_04844540.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944213|gb|EES84722.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1022

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +LL     + +  + +++ + + 
Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105
            +        + L+   +GSV+      D+ +  +   +  K+   +             
Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A    P+G    +  +         ++  G      +K  
Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDTGIRLYVRDTGIGIPEEKKRK 814

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +       +  E       +  A+L 
Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864


>gi|256830042|ref|YP_003158770.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfomicrobium baculatum DSM 4028]
 gi|256579218|gb|ACU90354.1| response regulator receiver sensor signal transduction histidine
           kinase [Desulfomicrobium baculatum DSM 4028]
          Length = 382

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 63/238 (26%), Gaps = 28/238 (11%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLSS 57
           +      +  L AL  L + + H+I +P+  I N      E+L E  +E    + I  S 
Sbjct: 125 SRQRMAETAKLAALGELATGVAHEINNPLQVILNEAGWIEEILGETALEGNSREQILESI 184

Query: 58  MSAII--------------RLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQV 102
                                  +      T   D +  +       IE      ++   
Sbjct: 185 ALIRRQGLRCKAITSKLLTLRCALDAKGATTNLPDLVHEVLIARRAQIEKMGIRVEKHWP 244

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLA 158
               E      E ++IL NL   A  +L                   E I S++ +G   
Sbjct: 245 EQLREVKLPDSEWSQILGNLVDNAMDALESTPAEERLLTIQADVDDAELIISVQDSGCGI 304

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 T+I +    +        +       +       +       H    +  + 
Sbjct: 305 -EEHLLTRIFEPFFSTKEVGKGIGLGLAICHGIIEAMGGSISVRSTPGHGSTFTIKVP 361


>gi|253699979|ref|YP_003021168.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774829|gb|ACT17410.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 859

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 61/243 (25%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + +   F    M+ +  L   + HD  + +  I  S +L      E     + ++ I  +
Sbjct: 473 LLEAQLFQSQKMESIGRLAGGVAHDFNNMLSVILGSAQLAMRCVTEGTPVWQDLEQIVQA 532

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKI 109
              +    + +             + L +    ++                         
Sbjct: 533 GKRSSQITRQLLAFSRKEIIAPREVNLNEHFTEMQKTLGRLIGEDIRMNFNPAPGLWTID 592

Query: 110 DLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKIN 154
             + +  +IL+NL + A  ++  GG                              ++  N
Sbjct: 593 ADTTQLDQILVNLAVNARDAMGNGGVLTIETANVRVDRSYSQFHLDASLGEYVQLAVSDN 652

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E   QI +    +        +    V  +  ++   +       H       
Sbjct: 653 GCGM-DRETLAQIFEPFFTTKEVGKGTGLGLATVYGIVRQHNGFINVYSEPGHGTTFQIN 711

Query: 213 LEK 215
             +
Sbjct: 712 FPR 714


>gi|220911015|ref|YP_002486324.1| multi-sensor signal transduction histidine kinase [Arthrobacter
           chlorophenolicus A6]
 gi|219857893|gb|ACL38235.1| multi-sensor signal transduction histidine kinase [Arthrobacter
           chlorophenolicus A6]
          Length = 563

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 61/223 (27%), Gaps = 28/223 (12%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIRLKF------- 66
           + + H++ +P+ +I   L+++ E   +       +++ ++  ++      ++        
Sbjct: 332 ATVNHELRTPLTSIMAYLDMIQESTEQPGSAEIHQMLDIVVRNTERLRTLIEDMLSVSRN 391

Query: 67  -MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLN 121
            +     +   V     L  +   +     +         V    E +    +  ++  N
Sbjct: 392 GLDDTLMHLTPVRLGHTLDLVASALRPLAKLQNVTIALDPVPDDPEILADEIQLQQVFTN 451

Query: 122 LFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFTQIVDGN----- 171
           L   A    P GG++ +  +              +  NG      E              
Sbjct: 452 LVSNAIKFTPSGGRIEVGSESHAAADGSRWATVRVADNGIGISSDEIDHVFTRFYRASNA 511

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   I    +       +   +   +           ++  L 
Sbjct: 512 MSGAIPGTGLGLAITKDIVARHGGTIDVASTLGAGTTVTVSLP 554


>gi|169826281|ref|YP_001696439.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
 gi|168990769|gb|ACA38309.1| sensor histidine kinase [Lysinibacillus sphaericus C3-41]
          Length = 446

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 56/211 (26%), Gaps = 15/211 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI----------IRLKFMRL 69
           S + HD+ +P+ +I    ELLD+  +  +                            +R 
Sbjct: 233 SNVSHDMKTPLASIRGYAELLDDETLTSQEKAEYAQIIEKQSLHMQNLLDDLNLTMRLRH 292

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLNLFMVAH 127
                   +  +     E VI+        +         +   +      +    +   
Sbjct: 293 QQLPLTLKEVNMVPFIREIVIDTLNTPQFELANIDFEAISENHHQLIDEHFMRRAIINFL 352

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFY 184
            +        +SV  S +++  ++  NG      +    F +   G          +   
Sbjct: 353 HNALLHNTPDVSVHVSVDKDSITIADNGKGISSEDLEHIFERYYRGTNTDNTAGTGLGTA 412

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +   +          ++S  L+K
Sbjct: 413 IARDIIEAHGGFVTITSEKGKGTIVSINLKK 443


>gi|153003555|ref|YP_001377880.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027128|gb|ABS24896.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 380

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIED-----EVMQL 52
           A+        +     L S I H++ +P+GAI    EL    L +          E  + 
Sbjct: 142 ARESLVRAERLATAGQLASGIAHEVGNPLGAITGYAELARSRLRDGSPPALAQAAEFAER 201

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110
           I   +      ++ +      +  V   I +    +          R +     E +   
Sbjct: 202 IAAETARIDRIVRDLLDLARPSAPVVRPIDVRGPLEAALRLARAQPRFRAVEVTEDLPAA 261

Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   +  A++LLNL + A  ++   G   +  + +      +++  G      +  
Sbjct: 262 LPRALADEQRLAQVLLNLLLNAGDAMGGAGAARVRARAAGGFVELAVEDAGPGFDTADLS 321

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++ +    +        +       +       +  E        +   L K
Sbjct: 322 -RVFEPFFTTKGAGQGTGLGLAICRSIVEALGGDIRAENAPGGGARVVVRLVK 373


>gi|13476354|ref|NP_107924.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
 gi|14027115|dbj|BAB54069.1| two component histidine sensor kinase [Mesorhizobium loti
           MAFF303099]
          Length = 541

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 66/220 (30%), Gaps = 26/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAII-----RLKFM 67
           + + H++ +P+ AI    ++L            + E + L+R S    +           
Sbjct: 289 AVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVTLVRDSGQHLLAVVTSILDVSR 348

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------AKILL 120
             +  YT   +    +  ++          +   +    +    + +         ++L+
Sbjct: 349 IESGAYTADPEPFRFMEAVDMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQMLI 408

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
           NL   A    P GG V +  +   +   F ++  G      E F  +             
Sbjct: 409 NLVSNAIKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGI-AEEDFANLGKPFTQIQNDYTR 467

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    V  L   ++  +  E +      ++  L 
Sbjct: 468 RFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 507


>gi|15612936|ref|NP_241239.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10172986|dbj|BAB04092.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 459

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 54/218 (24%), Gaps = 22/218 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYT 74
              S   H++ +P+  I +   +L   G++   +  + +      A+             
Sbjct: 234 QFVSDASHELKTPLTVIESYASMLRRWGMKKPELLDEAVEAIHEEAVRMKAMTEQMLQLA 293

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----------GEKIDLSRERAKILLNLF 123
                 +       ++E      + + VS+                    +  +++  L 
Sbjct: 294 NEDAREVLEKKEVDLLEVAEKACQHIHVSFEREIQVVKQGEVFRVWADENKLKQVVYILL 353

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A         VTI           S+   G      +   +I D              
Sbjct: 354 DNARKYSQGRITVTIKETS--ETCSLSVMDQGIGISKGDL-EKIFDRFYRVDKARARETG 410

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +       +   +   +  E  +     +  +L K
Sbjct: 411 GAGLGLSIAKAIVDAHGGEIAIESREGKGTTVLVVLPK 448


>gi|332708955|ref|ZP_08428926.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
 gi|332352497|gb|EGJ32066.1| PAS/PAC sensor hybrid histidine kinase [Lyngbya majuscula 3L]
          Length = 701

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +    +   M+ +  L   I HD+ + +  I  S +LL     +   +QL++    +A  
Sbjct: 323 ETQFLHAQRMESIGTLAGGIAHDLNNLLAPILMSAQLLQLKISDQRHLQLLKTVENNARR 382

Query: 63  -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   L F R   G    +     + +I  +I +       +          +S + 
Sbjct: 383 GAGLVKQVLSFARGITGQRTVLQVRHLIREIRHIILETFPRSIELSTDIDPNLWSVSGDA 442

Query: 116 ---AKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNL 157
               ++L+NL + A  ++                          D     + ++  +G  
Sbjct: 443 TQLHQVLMNLCINARDAMVDGGTLTLSAQNIFLDPNYARMHIDADVGPYIVVTVADSGIG 502

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +I +    +        +    V  +   +   +               L 
Sbjct: 503 IPLK-IQPRIFEPFFTTKEIGQGTGLGLSTVRGIVKSHGGFVNVYSEVGVGTNFKVYLP 560


>gi|330012468|ref|ZP_08307382.1| osmolarity sensor protein EnvZ [Klebsiella sp. MS 92-3]
 gi|328533819|gb|EGF60498.1| osmolarity sensor protein EnvZ [Klebsiella sp. MS 92-3]
          Length = 451

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +         +             + L N+ + A      
Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIATALQAGEIPVRMHPLSIKRALANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     +   F ++ +G      +    F   V G+   +     +    V  +
Sbjct: 353 NGWIRVSSGSEASRAWFQVEDDGPGIKPEQREHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +  RL     +   +++ A L 
Sbjct: 413 IDNHNGRLEIGSSERGGLLIRAWLP 437


>gi|320158468|ref|YP_004190846.1| sensor protein torS [Vibrio vulnificus MO6-24/O]
 gi|319933780|gb|ADV88643.1| sensor protein torS [Vibrio vulnificus MO6-24/O]
          Length = 970

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 458 AKARSLAEQANRAKSAFLATMSHEIRTPMNGVLGTARLLMDSGLNPLQKRYADIINRSGK 517

Query: 62  IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+          +S   L  + +     +              ++    
Sbjct: 518 NLLAILNDVLDYSKIEAGHLEIRESAFELHQMVEDTFQLMQSRAAEKSLTFSYHIESDVN 577

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A     +G          + +N   F +   G      E+
Sbjct: 578 HYWRGDVTRISQVLNNLVGNAIKFTHQGAVDIYVSLDLEQENVVQFEVTDTGIGIAQQEQ 637

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T        S          +       +      ++     +         + 
Sbjct: 638 ATLFDAFTQASGGQKAAGGTGLGLAISRRIIQAMGGQMEMASEEGEGSRFWFTVP 692


>gi|307822681|ref|ZP_07652912.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
 gi|307736285|gb|EFO07131.1| multi-sensor hybrid histidine kinase [Methylobacter tundripaludum
           SV96]
          Length = 872

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 60/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-----RLKFMRLAFGYT 74
           + + H++ +P+  I N++ LL      D  + L        +          + +A    
Sbjct: 517 AMLAHELRNPLAPIRNAVRLLKMQEATDPKLTLSCNIIDRQVTHMTRLLDDLLDMARIMQ 576

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAKILLNLF 123
           G +   I   ++  ++ + I   + +           Q              A++L NL 
Sbjct: 577 GKIRLKIEHFELTDIVNNAIETSRPLLESRKQELIISQTMTPQWLEGDHVRLAQVLSNLL 636

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-----DS 178
             A      GGK+ +SV    ++ +  +K  G                            
Sbjct: 637 NNAAKYTGEGGKIMLSVMRKGSDAVIEIKDTGIGISPDILPQIFDLFTQADHTLAHSQGG 696

Query: 179 HDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
             I    V  L   +   +             +  L 
Sbjct: 697 LGIGLTLVRQLVEIHGGTVTAASEGIGQGSTFTVRLP 733


>gi|237756786|ref|ZP_04585277.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691052|gb|EEP60169.1| alkaline phosphatase synthesis sensor protein PhoR
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 337

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 64/217 (29%), Gaps = 19/217 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H++ +PI  + +++E +++   +  +++ + ++          +          
Sbjct: 120 FVSNVSHELKTPISVLKSAMETIEDEIKDSNILKFVDMAKKRINQMDSLINDLLILARLE 179

Query: 78  DSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEKIDLSRERAK----ILLNLF 123
                +   + ++             +  DK +++     K        +     L NL 
Sbjct: 180 SQEDLVKKKKYLLRKQVEDIFEDLQHLTKDKNIKLKNNIPKNFEVYADEQKLSIALKNLI 239

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VESTIDS 178
             A     + G V ++ +     +  S+   G           F +    +      I  
Sbjct: 240 ENAIKYNVQNGIVEVNAKTDGKYDTISVIDTGIGIPPESIPLVFERFYRVDKSRSRNIGG 299

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +   +K ++  E            + K
Sbjct: 300 TGLGLSIVKHITEAHKGKVWVESQVGKGSRFYIKIPK 336


>gi|284035090|ref|YP_003385020.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283814383|gb|ADB36221.1| multi-sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 1153

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 64/238 (26%), Gaps = 29/238 (12%)

Query: 5   ICFNLSSMDLVALLCS------RICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
                 +  L A+  +       I H+  +P+  +   LE LL +  +++   +    ++
Sbjct: 327 QEEQKRAEALAAIDQAKTAFFNNISHEFRTPLTLMLGPLEELLQDTALQESTYKQPIEAT 386

Query: 58  MSA---------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                        +       A     S   +  +G    +   F ++ +R  +  + + 
Sbjct: 387 HRNALRLLKLVNNLLDFSRIEAGRVKASFRPVDLVGLTVDLASSFRSLIERAGLELSVDC 446

Query: 109 IDLS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +            K++LNL   A     +G        ++       +   G      
Sbjct: 447 EPMPAVVYADAEMWEKVVLNLLSNAFKYTLKGHIGVQLTAEADGVV-LRVSDTGVGIPAA 505

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E        +        T +   I    V  L   +   +     +      +  L 
Sbjct: 506 ELPHMFERFHRVANAGGRTYEGSGIGLSLVHELVRLHGGTITVTSREGEGSTFTVRLP 563



 Score = 85.6 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 69/248 (27%), Gaps = 40/248 (16%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRLSSM 58
            ++  +  ++   A + S   HD+  P+  I +  +LL     ++     + ++ ++ ++ 
Sbjct: 903  DLQRSNDNLQQFAYVAS---HDLQEPLRKIQSFGDLLKNQYADNLGEGIDYLKRMQTAAN 959

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------- 111
                 ++ +      T   +    +   E +    + ++  +Q +    +I         
Sbjct: 960  RMSTLIRDLLSFSRITTRQEVTETVSLAETLSMVVLDLEVMIQETGAEMRIHPLPTVLGD 1019

Query: 112  SRERAKILLNLFMVAHAS--------------------LPRGGKVTISVQDSKNENIFSL 151
              +  ++  NL   A                       +      +           + +
Sbjct: 1020 RSQLIQLFQNLLSNALKFRRKSSAGVSVPPVVEVSAQLVNVSELPSTVRPTRSVAAYYRI 1079

Query: 152  KINGNLARFPEKF-TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             +  N   F EK+  +I          S      I       +   +   +  +      
Sbjct: 1080 DVTDNGIGFNEKYLDRIFQVFQRLHGKSEFQGTGIGLAICEKVVANHGGVITAQSQPGEG 1139

Query: 207  VVLSALLE 214
               S  L 
Sbjct: 1140 ATFSVYLP 1147


>gi|228928263|ref|ZP_04091304.1| hypothetical protein bthur0010_29620 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228831310|gb|EEM76906.1| hypothetical protein bthur0010_29620 [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 436

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSNANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|229101327|ref|ZP_04232071.1| hypothetical protein bcere0019_5060 [Bacillus cereus Rock3-28]
 gi|228682032|gb|EEL36165.1| hypothetical protein bcere0019_5060 [Bacillus cereus Rock3-28]
          Length = 411

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 189 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAMDISTISKECRRLSKLVSNLLLLA 248

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + D  + I  +   +  ++V      +       ++++
Sbjct: 249 RSDSNQIEMDKKTFEMGKLLEEIVDPYKEIASYQEKEMILKVERNMSFMGDRERIHQMMV 308

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 309 ILLDNAMKYTNEGGHIRIDCTQTSSSICIQVKDDGIGVKVEDIPKLFDRFYQGDKARSTS 368

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++L E           +L K
Sbjct: 369 EGAGLGLSIAKWIVEKHYGKILVESKWGEGTCFEVVLPK 407


>gi|229095220|ref|ZP_04226212.1| hypothetical protein bcere0020_4770 [Bacillus cereus Rock3-29]
 gi|229114168|ref|ZP_04243589.1| hypothetical protein bcere0017_4700 [Bacillus cereus Rock1-3]
 gi|228669188|gb|EEL24609.1| hypothetical protein bcere0017_4700 [Bacillus cereus Rock1-3]
 gi|228688079|gb|EEL41965.1| hypothetical protein bcere0020_4770 [Bacillus cereus Rock3-29]
          Length = 400

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 178 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAMDISTISKECRRLSKLVSNLLLLA 237

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + D  + I  +   +  ++V      +       ++++
Sbjct: 238 RSDSNQIEMDKKTFEMGKLLEEIVDPYKEIASYQEKEMILKVERNMSFMGDRERIHQMMV 297

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 298 ILLDNAMKYTNEGGHIRIDCTQTSSSICIQVKDDGIGVKVEDIPKLFDRFYQGDKARSTS 357

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++L E           +L K
Sbjct: 358 EGAGLGLSIAKWIVEKHYGKILVESKWGEGTCFEVVLPK 396


>gi|229160352|ref|ZP_04288350.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803]
 gi|228623076|gb|EEK79904.1| hypothetical protein bcere0009_11460 [Bacillus cereus R309803]
          Length = 466

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 59/215 (27%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V  LI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTHLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     +      +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKKIRIATNLDPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGDIIITLEKIDDYCELKIKDTGIGIDIEHLDNLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +  +   E    +   +   L+
Sbjct: 424 GLGLAIVRQIVHIHDGQWSIESEKGNGTTVIIKLK 458


>gi|167747901|ref|ZP_02420028.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662]
 gi|167652632|gb|EDR96761.1| hypothetical protein ANACAC_02631 [Anaerostipes caccae DSM 14662]
          Length = 814

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 28/234 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 ++ M    L  + + H+I +P+ A+    ELL    +  +  + +   + S+  
Sbjct: 317 SKNQRRIAEMKSAFL--ANMSHEIRTPMNAVTGVSELLLREDLSAKQREYVNTIAHSSNS 374

Query: 63  RLKFMRLAFGYTG--------------SVDSLIGLGDIEQVIEDFIAVDKRVQVS--WTG 106
            L  +     ++                   +  +  +  +      V   + +      
Sbjct: 375 LLSVINDILDFSKIESGKFTLIEEEYSLRSLITDITALTVLKIGAKPVCFYIDLDEKLPA 434

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEK 163
                     +I++NL   A     +G         +++     + +++  G   R  + 
Sbjct: 435 FLYGDMTRVKQIMVNLLGNAVKFTEQGHICLRLSGRIENGDFWLVMTVEDTGIGIRKQD- 493

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             ++             +     +       LA   +  +  E +       +A
Sbjct: 494 MDRLFHSFEQVDTHHSHSTGGTGLGLAISRNLAEMMEGSIDVESVYGEGSSFTA 547


>gi|149916635|ref|ZP_01905137.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149822352|gb|EDM81741.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 511

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 52/230 (22%), Gaps = 26/230 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
             ++ +  L S + H+I +P+  I +  EL   +  +  E  +L              +R
Sbjct: 281 QKLEAIGTLASGVAHEINNPVQGIMSYAELVAQDPDLPSETTELAAEIVQECERVKTIVR 340

Query: 69  LAFGYTGSVDSLIGLG--------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
               +                       +          +++    E   +S +  ++  
Sbjct: 341 NLLTFARREAVGCEPTSLRAVVDATFSLIRAVLRHDHVVLEIDVPEELPRVSCDPQQLRQ 400

Query: 121 NLFMVAHASLPRGGKVTISVQDSK--------------NENIFSLKINGNLARFPEKFTQ 166
            L  +   +              K                    +   G      E   +
Sbjct: 401 VLMNLITNARDALNLRYPGHDPDKRLRVGARVVEVEGRPFAELGVVDRGAGM-AAEVRER 459

Query: 167 IVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I D    +  +     +       +  ++   +               L 
Sbjct: 460 IFDPFFTTKGEGQGTGLGLSVTHNIVRDHGGHIQVHSELGSGTRFEVRLP 509


>gi|172064664|ref|YP_001812314.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6]
 gi|171998149|gb|ACB69065.1| Hpt sensor hybrid histidine kinase [Burkholderia ambifaria MC40-6]
          Length = 829

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 64/239 (26%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++    + S    A+  + I H+I +P+  I +SLELL    +  ++      +  ++  
Sbjct: 323 RSRVAAVRSERDKAMFVAFISHEIRTPMHTILSSLELLQRSKLPPKLTSRADAAVAASES 382

Query: 63  RLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106
            L  +     Y+                        + V          + V        
Sbjct: 383 LLTLLDDILEYSRLESHNVTLALEPTPVVPWAQHCADMVRWRVDEKQLDLAVELACARTL 442

Query: 107 EKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFP 161
             +       +I+LNL + A                    D     +  ++  G     P
Sbjct: 443 CVLIDPARTRQIVLNLLVNAIKFTSAGSIALRVDYLDVKPDQLGSLVIEVRDTGIGI-SP 501

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +            +    +       L    +  +      D   + + +L 
Sbjct: 502 ESQRRIFEPYQRVEQAGNRRVAGSGLGLSICRELVELMEGVITVSSNPDKGTIFTVILP 560


>gi|115377380|ref|ZP_01464585.1| sensory box histidine kinase/response regulator, putative
            [Stigmatella aurantiaca DW4/3-1]
 gi|115365591|gb|EAU64621.1| sensory box histidine kinase/response regulator, putative
            [Stigmatella aurantiaca DW4/3-1]
          Length = 1222

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 20/234 (8%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------M 50
            + +          L AL  + S I HD+ + + A+   LE+L                 M
Sbjct: 845  LEQARAALARQEHLRALGEMSSGIAHDLNNTLNAMRLRLEMLQRDAAFAPHQAKNLKSLM 904

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSW 104
            Q++  +        +F R  F  +     L G+           +         ++++  
Sbjct: 905  QIVSDAGTRVRHLQEFSRQRFEPSQEQVHLHGIIHEAVELARDNIEHRARNEGVKLRIEN 964

Query: 105  TGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                +        +   + LNL + A  ++P GG V +      ++ + +++  G     
Sbjct: 965  EVPVLPAVNGEAADLRYVFLNLLLNARDAMPHGGTVHLRGTVCASKVVITVEDEGTGIPQ 1024

Query: 161  PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +            +       +       L          V +    
Sbjct: 1025 DHLDSIFLPFFTTKGAQGTGLGLSMAYGVVSRAGGTLTAANRPKGGAVFTLTFP 1078


>gi|110635898|ref|YP_676106.1| periplasmic sensor signal transduction histidine kinase
           [Mesorhizobium sp. BNC1]
 gi|110286882|gb|ABG64941.1| periplasmic sensor signal transduction histidine kinase
           [Chelativorans sp. BNC1]
          Length = 589

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 75/246 (30%), Gaps = 36/246 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M K +   + +++      + + H++ +P+ ++ +++E L    +    + +M++I+   
Sbjct: 345 MTKALYARIEAIES---FAADVAHELKNPLTSLGSAVETLPLAKDERSRERLMEIIQHDV 401

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104
                 +             A   +  +D    L D+    +D  +  K+V + +     
Sbjct: 402 RRLDRLITDISDASRLDAEFAREDSEIIDLQKFLRDLVAGAQDAGSKKKKVDIQFKTEGK 461

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF 160
              +           +++ NL   A + +P  G         S+   I ++  NG     
Sbjct: 462 AGQSFVVQGHDLRLGQVVTNLIENARSFVPDEGGRVTITLSRSQRRIIITVDDNGPGI-R 520

Query: 161 PEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD------HNVV 208
            +   +I +                 +       +   +   L  E I            
Sbjct: 521 ADNIDRIFERFYTDRPAGEAFGQNSGLGLSISRQIVEAHGGTLTAENIPGAKPGEVRGAR 580

Query: 209 LSALLE 214
               L 
Sbjct: 581 FVISLP 586


>gi|95928637|ref|ZP_01311384.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135427|gb|EAT17079.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 1079

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 72/240 (30%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           + K       +    +   SR+ H++ +P+ AI+   +L+    +  + D+   ++    
Sbjct: 688 LKKARKQAEEANRAKSEFLSRMSHELRTPLNAINGFSQLMLSSRKNPLNDKHRSMVEQID 747

Query: 58  MSAIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +    L+ +                    VD    + +   ++       +    S  G
Sbjct: 748 GAGKHLLELINEVLDLARIEAGKLSLSVEAVDPCHIINECLPLLHSLAEQHQVTFHSCCG 807

Query: 107 EKIDL-----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLAR 159
           E+             ++L+NL   A      GG VTI VQ ++      F +  NG    
Sbjct: 808 EQTFPLVKADYTRTKQVLVNLLSNAAKYNRPGGDVTIHVQANEPTGFLRFQVIDNGLGI- 866

Query: 160 FPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             EK  Q+             I+   I       L      ++  E            L 
Sbjct: 867 AEEKQKQLFVPFARLAQDSENIEGTGIGMTITKQLVEAMGGQIDFESRYGQGSTFWFTLP 926


>gi|329901031|ref|ZP_08272676.1| Transporter [Oxalobacteraceae bacterium IMCC9480]
 gi|327549278|gb|EGF33854.1| Transporter [Oxalobacteraceae bacterium IMCC9480]
          Length = 604

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 65/233 (27%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR 54
           +       + +  L     + + + H++  P+ AI    +     L+          L  
Sbjct: 364 LRTTQDELVQAGKLAMLGQMAAGVTHELNQPLAAIRAFADNAVTFLERGQPAQASANLAH 423

Query: 55  ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWT 105
                    +       F R + G    V+    +     +++          ++ ++  
Sbjct: 424 ISAASARMGVIIGQLKGFARKSHGSVALVELTPSVHASALLLQAEFDRLGVVLQLDIAGP 483

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEK 163
            +    +    ++L+NL   A  ++    +  +  SV    +  +  ++ +G      + 
Sbjct: 484 LQITGDAVRLEQVLINLLRNALDAVEEAPQRHVALSVAREGDHALICVRDSGPGI-PDDV 542

Query: 164 FTQIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             Q+      +      +         +    + +L    +          L 
Sbjct: 543 AAQLFAPFFTTKPSGKGLGLGLAISSSIVQAMRGQLSAHNLPGGGAEFQLRLP 595


>gi|262370176|ref|ZP_06063503.1| sensor protein [Acinetobacter johnsonii SH046]
 gi|262315215|gb|EEY96255.1| sensor protein [Acinetobacter johnsonii SH046]
          Length = 522

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 10/222 (4%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----R 54
           A+ I   +  + L AL  L + I H+I +P+ AI  + EL+     + E++  +      
Sbjct: 298 AQKINQRVQQLKLAALGQLSASIAHEIRNPLAAITQANELMQLNDPQQELLHNMIAKQAS 357

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L   R    Y   +D    L          +      ++S   +     ++
Sbjct: 358 RIDKIIGDTLNMARSKETYPTLIDVASFLERFIVEDLPDVKDQIDYRISDQAQIQFDEQQ 417

Query: 115 RAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
             ++L+NL   A          + I V   KN     +   G      ++ T +      
Sbjct: 418 LRQVLINLIRNAIRHNAAEAEHIHIRVYSYKNLVHIDVCDFGEGVATQDQST-LFQPFFS 476

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++I+   +  Y        N+ +L   +             +
Sbjct: 477 TSINGTGLGLYLSHSFCEANQAKLYY-VEQKIGACFRIECPR 517


>gi|258514826|ref|YP_003191048.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257778531|gb|ACV62425.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 531

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 58/240 (24%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           +A+       +  +     +   H++ SP+ A+    ELL +     + D     +   +
Sbjct: 284 LAETNRQLQETDRIKDEFLANTSHELRSPLTAVIAFTELLMDESSGELNDLQRDYVHEIN 343

Query: 58  MSAIIRLKF---------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            S    L                       +            +  +  +     +  + 
Sbjct: 344 DSGRELLGMINGFLDLSKIAAGKTFLYREHFKIDELIEDIFLRMRHLFNNKGITLEVARN 403

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARF 160
                      +  ++L NL   A           V  +  DS  + I +++  G     
Sbjct: 404 KNQLPVWADRGKTGQVLTNLLSNALKFTTTGGKVVVESNSGDSGRDVIITVRDTGIGIDI 463

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I                   I       L   +   +      +   + +  L 
Sbjct: 464 RD-QEKIFQPFYQVDGTSTRNYGGMGIGLNLAKKLVELHGGTIRVSSQQNAGSIFTFTLP 522


>gi|225862543|ref|YP_002747921.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225785877|gb|ACO26094.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 416

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V      +       ++++
Sbjct: 254 RSDSNQIEMDKKIFEMDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 313

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSTS 373

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESRWGEGTCFEVILPK 412


>gi|191637827|ref|YP_001986993.1| Sensor protein (Fragment) [Lactobacillus casei BL23]
 gi|239631191|ref|ZP_04674222.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301065952|ref|YP_003787975.1| signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|190712129|emb|CAQ66135.1| Sensor protein (Fragment) [Lactobacillus casei BL23]
 gi|239525656|gb|EEQ64657.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300438359|gb|ADK18125.1| Signal transduction histidine kinase [Lactobacillus casei str.
           Zhang]
 gi|327381893|gb|AEA53369.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei LC2W]
 gi|327385054|gb|AEA56528.1| PAS/PAC sensor signal transduction histidine kinase [Lactobacillus
           casei BD-II]
          Length = 555

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 63/225 (28%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +       + H++ +P+ AI    E L     ++    D  + +I   S      +
Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKNDPATLDRFLGIIYDESKRLTQLI 383

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRER 115
             +        + +    +   + V +    + K +Q         ++     +   R+ 
Sbjct: 384 NDILTLSRPDSNQNVAASVALKKLVDDALHNLAKVIQDKQIRVEVAITPDLLVVTDERKL 443

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I+ NL   A       G VTIS Q   ++   ++   G      E   +I +      
Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLSLAVADTGIGISETE-QARIFERFYRVD 502

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L       +            +  L 
Sbjct: 503 KARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLP 547


>gi|13474248|ref|NP_105816.1| two-component sensor histidine kinase ExoS [Mesorhizobium loti
           MAFF303099]
 gi|14025000|dbj|BAB51602.1| two-component sensor histidine kinase; ExoS [Mesorhizobium loti
           MAFF303099]
          Length = 594

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 75/248 (30%), Gaps = 38/248 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + +++      + + H++ +P+ ++ +++E L           +M +I+   
Sbjct: 348 MTNALYARIEAIES---FAADVSHELKNPLTSLRSAVETLPLAKNDNSRSRLMDIIQHDV 404

Query: 58  MSAIIRLKFMRLA--------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
                 +  +  A            G+VD    + D+  V  +     K V++       
Sbjct: 405 RRLDRLITDISDASRLDAELAREDAGTVDLKKFITDLVAVSRETTRNKKAVEIELKVAKL 464

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLA 158
                            +++ NL   A + +P   G +++S+  +   NI ++  NG   
Sbjct: 465 PQGVKGYFVAGHDLRIGQVVTNLIENARSFVPEDHGHISLSLARAGKFNILTVDDNGPGI 524

Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD------HN 206
              +   +I +                 +       +   +   L  E I          
Sbjct: 525 -RADNIDRIFERFYTDRPAGEAFGQNSGLGLSISRQIVEAHGGTLTAENIPGTKPGEIKG 583

Query: 207 VVLSALLE 214
                 L 
Sbjct: 584 ARFVVTLP 591


>gi|313114103|ref|ZP_07799655.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623512|gb|EFQ06915.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 449

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
            +     ++  +     + + H++ +P+ +I    EL++    +        Q I + + 
Sbjct: 212 SDRILRENNEKMRQEFTANVSHELKTPLTSISGYAELIETGIAKPEDVPGFAQKIHVEAS 271

Query: 59  SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWT 105
             I  +  +             +     +VD L    D  +  +            +  +
Sbjct: 272 RMIQLVNDILQLSSLDNASEAGSEPEMETVDLLTVAKDCVERQKLNARRAYISLNCLGES 331

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE-- 162
                      ++  NL   A      GGKV I+           ++  NG         
Sbjct: 332 ALVHGNRALLDELCQNLCDNAIRYNRPGGKVQITTACSRDGHCTLTVADNGIGIPKEAQS 391

Query: 163 -KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +   +       +    V  +A  +  R+  E   D    ++    
Sbjct: 392 SVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLESQVDVGTTITVTFP 446


>gi|322420323|ref|YP_004199546.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126710|gb|ADW14270.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1126

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 68/240 (28%), Gaps = 31/240 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS---LEL-----LDEVGIEDEVMQLIR 54
                 S  + A+  L   I HD  + +  I      LEL     L +     +V+    
Sbjct: 742 EEQLRQSQKMEAVGHLAGGIAHDFNNILTVIVGYGNLLELDGSLTLQQREQVGQVISAAE 801

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             S      L F R        +D    +G +++ +   I  D  +Q     E++ +  +
Sbjct: 802 RGSQLTRGLLAFSRKQVMNPRVLDLNALVGQVQKFLLRIIGEDVELQFHPVPEQMKVFAD 861

Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQDS---------------KNENIFSLKINGN 156
            +++   L      +  ++P GG ++I                           +   G 
Sbjct: 862 GSQVEQVLMNLATNSRDAMPDGGVLSIETCWQEIDEAYARSQGYGNPGRYACLMVSDTGI 921

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    + +      +    V  +  ++K  +               L 
Sbjct: 922 GMDRG-TRERIFEPFFSTKVVGKGTGLGMSIVYGIVKQHKGFINVYSEPGEGTTFKIYLP 980


>gi|227535594|ref|ZP_03965643.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227186724|gb|EEI66791.1| signal transduction histidine kinase [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 555

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 63/225 (28%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +       + H++ +P+ AI    E L     ++    D  + +I   S      +
Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKNDPATLDRFLGIIYDESKRLTQLI 383

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRER 115
             +        + +    +   + V +    + K +Q         ++     +   R+ 
Sbjct: 384 NDILTLSRPDSNQNVAASVALKKLVDDALHNLAKVIQDKQIRVEVAITPDLLVVTDERKL 443

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I+ NL   A       G VTIS Q   ++   ++   G      E   +I +      
Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLSLAVADTGIGISETE-QARIFERFYRVD 502

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L       +            +  L 
Sbjct: 503 KARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLP 547


>gi|227514442|ref|ZP_03944491.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|227087192|gb|EEI22504.1| histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|299782928|gb|ADJ40926.1| Sensor protein [Lactobacillus fermentum CECT 5716]
          Length = 500

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 60/219 (27%), Gaps = 22/219 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR--------- 63
              + + H++ +P+  I+  LE L         +   +QL++  +   I           
Sbjct: 265 QFMADVAHEMRTPLTTINGLLEGLAYDAIPEEDKMHSIQLMQNDTKRLIRLVNDNLNYEK 324

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                + +      +   L  L D  +        + ++ V  +           +I+ N
Sbjct: 325 IRTNQISMERKVFDAAAVLENLRDQLRKKAAANKDELKLVVPDSIPVYADYDRFVQIMFN 384

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES---T 175
           +   A       G++TIS Q         +   G      +    + +    +       
Sbjct: 385 IIQNAIQFTTG-GQITISAQRVAQGTEVKVADTGIGMTEEQVQNIWERFYKADRSRMNSQ 443

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  L   +  ++  +         +    
Sbjct: 444 YGESGLGMAIVRQLVELHGGKIDVDSTYGQGTTFTVFFP 482


>gi|307154954|ref|YP_003890338.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
 gi|306985182|gb|ADN17063.1| response regulator receiver sensor signal transduction histidine
           kinase [Cyanothece sp. PCC 7822]
          Length = 373

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 62/235 (26%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQ 51
            + I   L        L +   S + H+  +P+  I  S +LL+E           E + 
Sbjct: 126 ERAIRVALQKEKELSELKSRFWSMVAHEFRTPMTTILGSAQLLEELHHQISEERRREYLF 185

Query: 52  LIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           LI+ S  S    L             ++              L D  Q            
Sbjct: 186 LIQQSVRSMEQLLNDVLSIGRVEGGSLKFQPAILNLEQFCRDLIDEMQFNAGPNYQIIFQ 245

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR- 159
           Q           +    IL+NL   A    P GG + +++     E    ++ NG     
Sbjct: 246 QHGDCEHTYLDKKLLRHILVNLLTNAIKYSPEGGHIYLNIFCDHTEIKLQVQDNGIGIPE 305

Query: 160 --FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 F          +I    +    V      +   ++          ++  
Sbjct: 306 ENQHHLFEPFQRAGNVGSIPGTGLGLTMVKKCLDLHGGEIVVNSQVGVGTTITLT 360


>gi|78060129|ref|YP_366704.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
 gi|77964679|gb|ABB06060.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. 383]
          Length = 781

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 62/231 (26%), Gaps = 21/231 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
                +S  L   L + + H++ +P+  I+  +E+L   G      Q I     SA    
Sbjct: 397 RDQAATSNRLKDELLATVSHELRTPLNVIYGWVEVLRNSGDSALQQQAIDAIDRSARSLT 456

Query: 65  KFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKI 109
           + +                    VD +    D     +   +    V      + T    
Sbjct: 457 RMVGDILDASSLATGKLQLDAMPVDVVRLFSDSVGAFQTAASSAGIVLEFDCAASTCVVS 516

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +    ++L NL   A    P GG VT+ +       + ++   G              
Sbjct: 517 GDAERLRQMLSNLVSNALKFTPAGGSVTVGLARDDVRVVLTVSDTGQGIVPAFLPYVFDM 576

Query: 170 GNVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                           +    V  +A  +   +  +    +     +  L 
Sbjct: 577 FRRADDSPASSRRGLGLGLSIVRHIAELHGGSVTVKSAGRNRGATFTVTLP 627


>gi|116494442|ref|YP_806176.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
 gi|116104592|gb|ABJ69734.1| Signal transduction histidine kinase [Lactobacillus casei ATCC 334]
          Length = 555

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 63/225 (28%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +       + H++ +P+ AI    E L     ++    D  + +I   S      +
Sbjct: 324 QVEKMQLDFVGNVSHELKTPVTAISGFAETLLGGAKNDPATLDRFLGIIYDESKRLTQLI 383

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSWTGEKIDLSRER 115
             +        + +    +   + V +    + K +Q         ++     +   R+ 
Sbjct: 384 NDILTLSRPDSNQNVAASVALKKLVDDALHNLAKVIQDKQVRVEVAITPDLLVVTDERKL 443

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I+ NL   A       G VTIS Q   ++   ++   G      E   +I +      
Sbjct: 444 TQIVRNLLNNAVFYNRLAGHVTISAQVVDHQLSLAVADTGIGISETE-QARIFERFYRVD 502

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V  L       +            +  L 
Sbjct: 503 KARSRHNGGTGLGLAIVAELVKSMDGHVAVHSQVGVGSTFTVTLP 547


>gi|301054718|ref|YP_003792929.1| two component system histidine kinase [Bacillus anthracis CI]
 gi|300376887|gb|ADK05791.1| two component system histidine kinase [Bacillus cereus biovar
           anthracis str. CI]
          Length = 457

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 220 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 276

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 277 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 336

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 337 DLFMKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 396

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +  ++  E         +  L 
Sbjct: 397 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGKITVESELGEGSTFTFKLP 452


>gi|298675432|ref|YP_003727182.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298288420|gb|ADI74386.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 851

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 65/245 (26%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVM 50
            K     L    ++A           + + H++ +P+ +I    EL+       + +   
Sbjct: 606 KKQAEHALIEAKMIAESANRTKNEFLANVSHELRTPLNSIIGFSELMLTERRGELNEYQK 665

Query: 51  QLIRLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
             +     S    L  +             + +         +       +    +  + 
Sbjct: 666 HYLNNVKNSGYHLLSLINKILDISKIEAGKMDYNPQNLPIIDLVNDVSNTMHPQALNKNI 725

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKING 155
            ++        ++  +  K+   L+     A    P  GKVT+ V        F++K  G
Sbjct: 726 ELETITDKYLGNIYADENKLKEALYNLVTNAIKFTPERGKVTLQVNKLDGNIRFAVKDTG 785

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +K + +                   +    V      +  R+  E   +    +
Sbjct: 786 IGI-PEDKQSDLFKPFTQIDTSASREYGGAGLGLALVKKFVEMHNGRIWIESEVNKGTAI 844

Query: 210 SALLE 214
              + 
Sbjct: 845 YFTIP 849


>gi|291558759|emb|CBL37559.1| Osmosensitive K+ channel histidine kinase [butyrate-producing
           bacterium SSC/2]
          Length = 658

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 23/236 (9%)

Query: 1   MAKN-ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS 56
           M K  I     +  L A L   I HD+ +P+ +I  + ++L    E   +    Q+    
Sbjct: 416 MEKEKISVLAKNEQLRADLLRAISHDLRTPLCSISGNADMLLNSGERLDDITKHQIYTDI 475

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSW 104
              +   +  +      T   D  + L                 +           +   
Sbjct: 476 YDDSEWLINIVENLLSITRLNDGRLKLKFTDQLLDEVIAESLRHISRKHEEYQIVTECDE 535

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   R   ++L+NL   A    P+G  + I   +   +    ++ NG      E  
Sbjct: 536 LILAHMDVRLILQVLINLVDNAIKYTPKGSTIRICAMNENGKAKIQVEDNGPGI-CDEMK 594

Query: 165 TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +              S  +       +   +  +L+ E    H  + S  L 
Sbjct: 595 PHIFEMFYTGKNTIADSHRSLGLGLALCRSIIEVHNGKLVLEDNTPHGCIFSFTLP 650


>gi|224537735|ref|ZP_03678274.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520658|gb|EEF89763.1| hypothetical protein BACCELL_02618 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 775

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 54/230 (23%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK      + +    L  + + H+I +P+ AI     +L E   E+E ++ + + S + 
Sbjct: 536 LAKEEAEESNRIKSAFL--ANMSHEIRTPLNAIVGFSSILAEDVSEEERIEYLSIISKNN 593

Query: 61  IIRLKFMRLAFGYTGSV---------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            I L+ +      +                                +       V     
Sbjct: 594 DILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARMRQPNANVAICAVMPMPD 653

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  R   ++L N    A      G       +       F +   G      +   
Sbjct: 654 LLLYTDQRRITQVLNNFISNAMKFTNTGSITFGYEEPKDGYIRFFVTDTGTGIPPEKVAD 713

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +       +  E K  +               L 
Sbjct: 714 IFNRFVKLDSFKQGTGLGLAISQNIVKELKGEIGVLSELGKGSTFWFTLP 763


>gi|212637309|ref|YP_002313834.1| RscS [Shewanella piezotolerans WP3]
 gi|212558793|gb|ACJ31247.1| RscS [Shewanella piezotolerans WP3]
          Length = 934

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 62/239 (25%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           +AK +     S    +   + + H++ +P+  I    ++    LD      ++  L+   
Sbjct: 397 LAKAVIKADISNKAKSTFLATMSHELRTPLNGILGMAQIIEPNLDNPEHRKQIQILLESG 456

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSW 104
           +    +    +  +    G ++    L     V+E      + +             +  
Sbjct: 457 NHLTSLLNDILDFSKVEQGKLELESELFRFNSVLEPISKTYEPICDEKNIQLIVQNEIDE 516

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARF 160
                       +++ NL   A     +G            + +     ++   G     
Sbjct: 517 KQCFKGDKSRIRQVIYNLLSNAVKFTEQGSVSLLFKQGVNAEGQQGIEATIIDTGIGI-R 575

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           PE+   I D                 +    V  L       +      D     +  L
Sbjct: 576 PERLASIFDPFVQAESSTTRQYGGTGLGLSIVKQLVELMGGTISITSQVDKGTRFAIFL 634


>gi|254411816|ref|ZP_05025592.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196181538|gb|EDX76526.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 1478

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 52/225 (23%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A   + + H+I +P+  +    ELL    +    +  ++   +S    L  +     ++ 
Sbjct: 530 AQFLANMSHEIRTPMNGVLGMSELLLTTDLNPRQLDFVKTLQVSGEHLLGVINDILDFSK 589

Query: 76  SV-----------DSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRERAKIL 119
                        +    L D+  +               V        +       +I 
Sbjct: 590 LEAGEMRLDVDELNINRSLEDVLDLCSPQAEAKDLELALLVDTDVPRRLMGDVGRLRQIC 649

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN------ENIFSLKINGNLARFPEKFTQIVDGNV- 172
            NL   +      G  V       +       +  F+++  G      +K       +  
Sbjct: 650 TNLVSNSIKFTESGEVVIRVSVHQELEEQDKLQLRFAVRDTGIGINPEDKSKLFQAFSQV 709

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                       +       L       +  E            +
Sbjct: 710 DSSTTRKYGGTGLGLAICKQLVEMMGGEIGVESQLGVGSTFWFTI 754


>gi|163742422|ref|ZP_02149809.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
 gi|161384372|gb|EDQ08754.1| Hybrid sensory histidine kinase [Phaeobacter gallaeciensis 2.10]
          Length = 759

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 63/246 (25%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
                + L      A +         + + H+I +P+  +    EL+ E  ++++     
Sbjct: 219 RDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLDEDQTMYA 278

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VD 97
              S S    L  +     ++      + L      ++  I                 V 
Sbjct: 279 ETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVT 338

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKIN 154
            R   S             +IL N+   A           +V+    D +     S+   
Sbjct: 339 LRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTALRISVTDT 398

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      ++  +I +             +   +       L      R+  +       V
Sbjct: 399 GAGI-PDDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSV 457

Query: 209 LSALLE 214
            +  L 
Sbjct: 458 FTIDLP 463


>gi|145220456|ref|YP_001131165.1| PAS/PAC sensor hybrid histidine kinase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206620|gb|ABP37663.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 515

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 62/241 (25%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           ++   N   ++ +  L   I HD  + +  +    E+    L E     +    I  ++ 
Sbjct: 130 ESRLRNTQRLETIGTLAGGIAHDFNNILTPMLGYAEMGLSSLAEEDPLHDYFNEIIHAAE 189

Query: 59  SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---GEKIDL 111
            A   +     F R       +V     + +  +++   I     +Q          +  
Sbjct: 190 RAKNLVGQVLTFSRAQESQPTTVHIPTIIEEALKLLRPSIPATITIQKDIDAAARNILAD 249

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSK----------------NENIFSLKING 155
             +  ++++NL   A  ++   G +                             S+   G
Sbjct: 250 PSQIHQVIVNLAANAFQAMEESGGILSIKLHEMVPDRQLRRLLPTLQKVTHIHLSITDTG 309

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I +    +        +    V  +    K  +  E            L
Sbjct: 310 KGMDEATL-ERIFEPFFTTKSVNKGTGLGLSVVHGIITGYKGEITVESSQGKGTTFHVYL 368

Query: 214 E 214
            
Sbjct: 369 P 369


>gi|220929081|ref|YP_002505990.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219999409|gb|ACL76010.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 594

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 54/228 (23%), Gaps = 24/228 (10%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAI 61
            S  L  L     + + H+  +P+  I  S+E L +         +     +   + S  
Sbjct: 365 ESERLEQLRKDFVANVSHEFRTPLTVIKGSIEALIDGTIDNKEDIERYYGRMLSETKSLQ 424

Query: 62  IRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             +  +                              ++ +            ++      
Sbjct: 425 RLVGDLLELSRLQSGKISVNNELVHIPSLLSDITKSMQTIAIMKEISIVYTPINDVPAVS 484

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
                  ++ +     A    P+           K+    S++ +G      E    + +
Sbjct: 485 GDYDRLRQLFVIFIDNAIKYSPQKT-EIHIRAAVKSTLEISIEDHGYGISEEELPYVWDR 543

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +         +       L   +K  ++ +        ++  L 
Sbjct: 544 FYKTDKSREGGGTGLGLAIAKHLIKLHKGSVIIKSSLGKGTTVTVSLP 591


>gi|309792210|ref|ZP_07686682.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
 gi|308225751|gb|EFO79507.1| multi-sensor hybrid histidine kinase [Oscillochloris trichoides
           DG6]
          Length = 921

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 60/246 (24%), Gaps = 34/246 (13%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           MA  +     + +       A L   + H+I +P+ A+     LL E  ++ E    +  
Sbjct: 414 MANALRARNDAAEAATRAKSAFLA-NMSHEIRTPLNAVIGMAALLQESRLDQEQRIFVDT 472

Query: 56  SSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIA-----VDKR 99
                   L  +     ++              D    L     ++          +   
Sbjct: 473 IRTGGEALLAVISDILDFSRIESGQLELELAAFDLHHYLKTTVDLVAHSAYTKNLAMTCH 532

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKIN 154
           +           +    +ILLNL   A     +        +         E  F ++  
Sbjct: 533 IAPDVPQIVQGDAARLRQILLNLLGNAVKFTSQGEVALEVTLHDQPNPDGVEITFQVRDT 592

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      E+  ++                   +       L H     +       H  +
Sbjct: 593 GIGM-SAEQLERVFAPFVQADSSTARRYGGTGLGLAISQQLVHLMGGTISATSSLGHGSI 651

Query: 209 LSALLE 214
            S  L 
Sbjct: 652 FSLNLP 657


>gi|297180418|gb|ADI16634.1| signal transduction histidine kinase [uncultured delta
           proteobacterium HF0010_01J10]
          Length = 692

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 55/230 (23%), Gaps = 24/230 (10%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAII 62
            L      A   + + H++ SPI  I    E L      +          I   +     
Sbjct: 455 ELDEARQKADFAAIVSHELRSPITQIRLKGEALQLDLTVDDQDRQAHYDAIVAQAERLSR 514

Query: 63  RLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            +  +             A         L                  RV V     ++  
Sbjct: 515 LVDNVLDFASIERGSKTYAIKSVALKPLLTLTARTMADEARAAGAPLRVNVPDHLPRVMC 574

Query: 112 SRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            R+   +++LNL   A      GG +T+  Q +      ++  NG      E   +I + 
Sbjct: 575 DRDAITQVVLNLISNAIKYGASGGVITLEAQLAPKGVRVAVADNGQGI-PKESQDRIFEH 633

Query: 171 NVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           I    V  +   +   +               L 
Sbjct: 634 YYRVASTSVRKKRGTGIGLTIVRYIVEAHGGNIGVTSSPGEGATFHFTLP 683


>gi|295689378|ref|YP_003593071.1| signal transduction histidine kinase, nitrogen specific, Ntrb
           [Caulobacter segnis ATCC 21756]
 gi|295431281|gb|ADG10453.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Caulobacter segnis ATCC 21756]
          Length = 376

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 60/221 (27%), Gaps = 29/221 (13%)

Query: 21  RICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
            + H+I +P+  I  + +LL       +  +   ++               F   A    
Sbjct: 143 MLAHEIKNPLAGIRGAAQLLKTGASAVDQPLAQLIVDETDRIRRLVDRMEAFSDNAPTPR 202

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLP 131
             V+    L  +  ++ + +A   +++ S+      +  +     ++ LNL   A  +  
Sbjct: 203 EPVNIHQVLDRVRALVANGVADGLQLKESYDPSLPPVWGDEDHLIQVFLNLTKNAAEAAH 262

Query: 132 RGGKVTISVQDSKNE------------------NIFSLKINGNLARFPEKFTQIVDGNVE 173
             G    ++                            +  NG           +    V 
Sbjct: 263 MRGDGRGAISIHTAWRPGVRVRGADGKTSSGAPIEVRVVDNGPGVPTT-LRDHLFQPFVT 321

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +   +    V  L   +   +  E       V   LL 
Sbjct: 322 TKANGTGLGLALVTKLVTAHGGLIDFESEPGR-TVFRVLLP 361


>gi|260663096|ref|ZP_05863988.1| two-component histidine kinase [Lactobacillus fermentum 28-3-CHN]
 gi|260552288|gb|EEX25339.1| two-component histidine kinase [Lactobacillus fermentum 28-3-CHN]
          Length = 500

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 60/219 (27%), Gaps = 22/219 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR--------- 63
              + + H++ +P+  I+  LE L         +   +QL++  +   I           
Sbjct: 265 QFMADVAHEMRTPLTTINGLLEGLAYDAIPEEDKMHSIQLMQNDTKRLIRLVNDNLNYEK 324

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                + +      +   L  L +  +        + ++ V  +           +I+ N
Sbjct: 325 IRTNQISMERKVFDAAAVLENLREQLRKKAAANKDELKLVVPDSIPVYADYDRFVQIMFN 384

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES---T 175
           +   A       G++TIS Q         +   G      +    + +    +       
Sbjct: 385 IIQNAIQFTTG-GQITISAQRVAQGTEVKVADTGIGMTEEQVQNIWERFYKADRSRMNSQ 443

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  L   +  ++  +         +    
Sbjct: 444 YGESGLGMAIVRQLVELHGGKIDVDSTYGQGTTFTVFFP 482


>gi|209528198|ref|ZP_03276667.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491364|gb|EDZ91750.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 1778

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 32/245 (13%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
            + +     + +  L     + + H++ +P+ AI    E + E         + + +Q I 
Sbjct: 1384 LRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQKQALQTIE 1443

Query: 55   LSSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWT 105
             S+   +  +     +         +D                + +        + V   
Sbjct: 1444 RSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGISINVQIP 1503

Query: 106  GEKIDLSRERA---KILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKING 155
                DL  +     ++L+NL   A    P  GK           +   K+   F++   G
Sbjct: 1504 QALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRFAVIDTG 1563

Query: 156  NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                  E+ +++               +   +    V  +   +   +            
Sbjct: 1564 IGIN-EEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVGSGSQF 1622

Query: 210  SALLE 214
               + 
Sbjct: 1623 IFEIP 1627


>gi|182414885|ref|YP_001819951.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842099|gb|ACB76351.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 1222

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 79/241 (32%), Gaps = 29/241 (12%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
            M K        ++ +  L S + HD+ + +  I  S+ELL    +   + +++QL+  S+
Sbjct: 830  MEKQF-LRAQRIESLGALASGVAHDLNNVLTPILMSVELLRPLAQNQADRDMLQLLSDSA 888

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------ 111
                  ++ + L    + S    + +  I +     +      ++  T            
Sbjct: 889  RRGSDIVQQLLLFGRGSESPRVPLNVAGILKDTGRLMRETFPKKIVQTVYAPADLRLVEA 948

Query: 112  -SRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155
               +  +++LNL + A  ++P GG+                  + + +      +++  G
Sbjct: 949  DRTQIHQVVLNLCVNARDAMPEGGRLQITAENVEVEEELAQRHAAKGAGRYVRITVRDTG 1008

Query: 156  NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 PE   +I D    +        +    V+ +   +   +  +            L
Sbjct: 1009 AGI-SPENLDKIFDPFFTTKPVGQGTGLGLATVLGIVRGHGGFVDVKSQLGRGAAFEVYL 1067

Query: 214  E 214
             
Sbjct: 1068 P 1068


>gi|167765965|ref|ZP_02438018.1| hypothetical protein CLOSS21_00456 [Clostridium sp. SS2/1]
 gi|167712322|gb|EDS22901.1| hypothetical protein CLOSS21_00456 [Clostridium sp. SS2/1]
          Length = 658

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 23/236 (9%)

Query: 1   MAKN-ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS 56
           M K  I     +  L A L   I HD+ +P+ +I  + ++L    E   +    Q+    
Sbjct: 416 MEKEKISVLAKNEQLRADLLRAISHDLRTPLCSISGNADMLLNSGERLDDITKHQIYTDI 475

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSW 104
              +   +  +      T   D  + L                 +           +   
Sbjct: 476 YDDSEWLINIVENLLSITRLNDGRLKLKFTDQLLDEVIAESLRHISRKHEEYQIVTECDE 535

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   R   ++L+NL   A    P+G  + I   +   +    ++ NG      E  
Sbjct: 536 LILAHMDVRLILQVLINLVDNAIKYTPKGSTIRICAMNENGKAKIQVEDNGPGI-CDEMK 594

Query: 165 TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +              S  +       +   +  +L+ E    H  + S  L 
Sbjct: 595 PHIFEMFYTGKNTIADSHRSLGLGLALCRSIIEVHNGKLVLEDNTPHGCIFSFTLP 650


>gi|192289016|ref|YP_001989621.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
 gi|192282765|gb|ACE99145.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           TIE-1]
          Length = 913

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------Q 51
            ++      +  + A+  L   + HD+ + +  I   +E+L +   +   +        Q
Sbjct: 523 KESERQLRQAQKMQAIGQLTGGVAHDLNNILTVITGGIEILADGVSDRPGLKDVAAMVDQ 582

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            +  +S      L F R       S+D    + D  +++   +     + V    +    
Sbjct: 583 AVTRASDLTHGLLSFSRKQPLQPRSIDVNALMLDTVKLLRPTLGAGIEIDVEPAPDLRPA 642

Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153
             + +++   L      A  ++   GK                      +    + ++  
Sbjct: 643 LADPSQLGSALINLAINARDAMKGNGKLLLETGNVDLDQAYAAQHDEVSAGRYVMLAVSD 702

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G          ++ +    +    +   +    V     ++   +     + H   +  
Sbjct: 703 TGCGIPAS-IRDRVFEPFFTTKAVGEGTGLGLSMVYGFVKQSGGHIELYSEEGHGTTIRL 761

Query: 212 LLE 214
            L 
Sbjct: 762 YLP 764


>gi|75910179|ref|YP_324475.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75703904|gb|ABA23580.1| Cache sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 811

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 53/248 (21%), Gaps = 39/248 (15%)

Query: 5   ICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
               L      A L         + + H++ +P+  I    ++L       E  Q     
Sbjct: 323 EQAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSKLPEQEQHHINI 382

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------- 103
                  L  +         +++       E V                           
Sbjct: 383 IEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFIYE 442

Query: 104 ----WTGEKIDLSRERAKILLNLFMVAHASLPRGG--------KVTISVQDSKNENIFSL 151
                       ++   ++LLNL   A      G         + + + +   +   + +
Sbjct: 443 PASNLPTWVHIDAKRLRQVLLNLLGNAIKFTDHGQVKLKVETIEESSNQKPVNHRIRYCI 502

Query: 152 KINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +  G      E   +I     +        +   +       L       +         
Sbjct: 503 EDTGIGITDAELS-KIFLPFEQVGEKKRQTEGTGLGLAITRQLVQMMGSDIHVTSQVGKG 561

Query: 207 VVLSALLE 214
                 LE
Sbjct: 562 STFWFELE 569


>gi|17549399|ref|NP_522739.1| composite two-component sensor histidine kinase and response
           regulator hybrid transcription regulator protein
           [Ralstonia solanacearum GMI1000]
 gi|17431652|emb|CAD18329.1| probable composite two-component transcriptional regulatory (sensor
           histidine kinase and response regulator hybrid)
           transcription regulator protein [Ralstonia solanacearum
           GMI1000]
          Length = 676

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 72/234 (30%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S +       + + H++ +P+ A+    +LL     ++ + +    +   + 
Sbjct: 288 AREEAERASRLK--DDFLATVSHELRTPLNAVLGWAQLLAMRPYDEAMFRRGLEAIERSA 345

Query: 62  I-----RLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
                     + ++   +G V   I       + +  +   + +A  K++ V        
Sbjct: 346 RTQVHLIDDLLDMSAILSGKVPLEIGPVDLADVLERARETIEPMARQKQITVDTEYLPVP 405

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                +    ++  NL   A    P GG V I+VQ   +  + +++  G        P  
Sbjct: 406 LLQGDAGRLKQVFWNLLANAVKFTPEGGHVRITVQAGADGLVATVRDTGIGIEPTFLPHV 465

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           F +    +           +       L   +   +       D    ++  L 
Sbjct: 466 FDRFQQADLSSTRRHGGLGLGLAIAKQLVELHHGHITAASSGADLGTTMAVTLP 519


>gi|85703660|ref|ZP_01034764.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
 gi|85672588|gb|EAQ27445.1| two-component hybrid sensor and regulator [Roseovarius sp. 217]
          Length = 711

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     + + D  +   +++ H+I +P+  I    ++L E  +  E    +     S 
Sbjct: 195 LEEAREVAVIANDAKSDFLAKMSHEIRTPMNGIIGMADMLSETDLTPEQDSYVSTMVRSG 254

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
              L  +     ++                   + D+ Q++    A         V    
Sbjct: 255 DALLTIINDILDFSKIEAGKLTLASEPYRLREIVEDVTQLLAPLAARKGLMLYSDVAPDL 314

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +  +    +IL+N+   A      G     +      + +  +  +G      ++ 
Sbjct: 315 PEIMLGDAGRLRQILVNIAGNAVKFTLEGHVALRASAGGPGQIVIRVHDSGVGIPSDQQD 374

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +     +       L       L     +         L 
Sbjct: 375 KVFTAFEQVDNTATRSFGGTGLGLAVSRQLVTLMGGTLTLHSREGEGTRFDITLP 429


>gi|317056208|ref|YP_004104675.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315448477|gb|ADU22041.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 477

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 28/235 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58
           + +N  F          L + + HD+ +P+  I    E++ +     E +  + + +   
Sbjct: 250 LKQNKEFQNE-------LLANVSHDLRTPLTMIKGYAEMIRDISHEDEQQCAEDVAVIVR 302

Query: 59  SAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            A                 +K            + +  + +  + +           V+ 
Sbjct: 303 EADRLTALVGEILEYSELQMKESEDILTDCDLSEVVNSVTENFESLFSKDGYIFERSVAE 362

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  S    + + NL   A   +     + ++++   N+ +  +  +G      E  
Sbjct: 363 NIHVRGNSSRLTRAVYNLIDNAVRHIGDDKWIGVTLKAENNKAVIEIADHGEGIPADEL- 421

Query: 165 TQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I D    +          +    V     ++              V    L K
Sbjct: 422 ERIWDKYYTNRQRGGKGVSGLGLAIVKQTVTQHGGLCSAVSEVGAGSVFRIELAK 476


>gi|291524415|emb|CBK90002.1| Signal transduction histidine kinase [Eubacterium rectale DSM
           17629]
          Length = 440

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 19/222 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           L++        + + H++ +P+ AI    EL++   +E E              RL  + 
Sbjct: 217 LAAAKSRQDFTANVSHELKTPLTAISGYAELIENGMVEKEQQIHFATEIRRNAQRLLSLI 276

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRE 114
                   +DS       EQ+    +  D    +                        + 
Sbjct: 277 NDIIKLSELDSSEAQQGFEQLDLYGLVKDCMENLQVNAEQRKVALNFDGTDCMVRGNRQL 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             +++ NL   A      GG V ++V     + + +++ NG      +    F +    +
Sbjct: 337 LTELVENLCQNAIRYNNEGGTVNVTVHKLGGKTVLTVEDNGIGIPKDQQERVFERFYRVD 396

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                      +    V  +   +   L  +        +  
Sbjct: 397 KSRSKETGGTGLGLAIVKHIVELHDAGLTLDSEVGRGTTIKV 438


>gi|302877998|ref|YP_003846562.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302580787|gb|ADL54798.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 918

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 57/237 (24%), Gaps = 28/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +P+ AI    EL     + D+    +  +  +A 
Sbjct: 403 AKTQAEAANKAK--SEFLANMSHEIRTPMNAIIGFNELCLRTQLSDKQKDYLTKAGSAAQ 460

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKI 109
             L  +                    +     + ++  +I    +     + V       
Sbjct: 461 SLLHIINEVLDLSKIEAGQHMLEAIPLKISRVVKNVTDLIGVLAVDKGLTIHVDLDEHIE 520

Query: 110 DLS-----RERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
                       +ILLNL   A     +G                E  F+++ +G     
Sbjct: 521 QYPLRGDPMRLQQILLNLCSNAIKFSTQGSISIRCQLGAISGQAVELKFAVQDSGIGISP 580

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +        +              +       L      R+  E            
Sbjct: 581 AQLGLLFKPFSQADSSTTRRFGGTGLGLSICRGLVERMGGRIWVESEPGIGSTFCFT 637


>gi|225573641|ref|ZP_03782396.1| hypothetical protein RUMHYD_01835 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039009|gb|EEG49255.1| hypothetical protein RUMHYD_01835 [Blautia hydrogenotrophica DSM
           10507]
          Length = 882

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----------------DEVGI 45
            +       +  L A L   I HD+ +P+ +I  +   L                 ++  
Sbjct: 641 REEAAVLAKNEQLRADLLRAISHDLRTPLTSISGNASNLLFNSEDFDKETKKGLYKDIYE 700

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   +  +  + +S     +           +D +I              V         
Sbjct: 701 DSLWLINLVENLLSVSRIEEGRMNLRLSAELMDEVISEALQHVNRRSIEHVIVVENSDDI 760

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +R   ++++N+   A    PRG  +TIS   +       +  +G      E  +
Sbjct: 761 LLARIDARLIVQVVINIVDNAIKYTPRGSHITISTVQTGQIITVKISDDGPGM-DDEVKS 819

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D           +  S  +       + H +   +  +       V S  L 
Sbjct: 820 HVFDMFYTGSNKVADSRRSLGLGLSLCRSIIHAHGGEITVKDNQPQGTVFSFTLP 874


>gi|94502158|ref|ZP_01308657.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Oceanobacter sp. RED65]
 gi|94425705|gb|EAT10714.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Oceanobacter sp. RED65]
          Length = 629

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 53/238 (22%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +   +            + + H++ +P+  I     LL +     +  + I+   +SA
Sbjct: 245 LKQADAYEKQQQKYKDQFVASVSHELRTPLNGILGLTNLLVKQNPNSKKSKTIQKIHLSA 304

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
            +                         VD       +  V+              +  + 
Sbjct: 305 QMLLDVVNEILDYSKIQSGKFNIELIPVDIQTDFNHVFSVLTHLAHNKDIDFHIFIDPNI 364

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +++ NL   A     +G  V     + ++       F     G     
Sbjct: 365 RTRVLSDPLRLQQVINNLCSNAIKFTNQGKVVASIDIEDESVDSLTLHFKFMDTGIGISD 424

Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                          +V        +  +    +       +  E            L
Sbjct: 425 DALPHLFEAFKQSDDSVTRQYGGTGLGLFISQQIVKALGGHIEVESRLGGGSTFEFTL 482


>gi|75676406|ref|YP_318827.1| Signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
 gi|74421276|gb|ABA05475.1| signal transduction histidine kinase [Nitrobacter winogradskyi
           Nb-255]
          Length = 605

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 70/239 (29%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56
           +A+       +        + + H++ +P+ AI    +++ +            +  +L 
Sbjct: 334 LARTAAERADAAK--TRFLATMSHELRTPLNAIIGFSDMIVQEATLPLDATRRKEYAQLI 391

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------Q 101
           + S    L  +      +        +        + +     +                
Sbjct: 392 NDSGQHLLSVVNSILDMSKMESGSFEILPEPFAPREVLLSGSNLLALKARDNDIELVTRV 451

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                + +   R   +I+LNL   A     RGG+VTIS +      +  +  NG      
Sbjct: 452 PENLPQMVGDPRAFRQIVLNLVSNAIKFTERGGRVTISARVEGARMVLRVVDNGVGIAQE 511

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D         +   +   +    V  L   +   +  +   +    ++ +L 
Sbjct: 512 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGEIDVQSKVEEGTTVTVMLP 569


>gi|317494185|ref|ZP_07952601.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917958|gb|EFV39301.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 593

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 78/231 (33%), Gaps = 18/231 (7%)

Query: 1   MAKNICFN---LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + +          +  L  L  L + + H++ +P+ AI   ++ L +   + + ++ I +
Sbjct: 355 LTEQKEMQRHIAQAERLATLGELMAGVAHEVRNPLTAISGFIQYLKQGESDPQRIEYIDI 414

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                    K ++    +      L     I Q+I++ + + +   V+   +      E 
Sbjct: 415 IIHEVRSINKVIQQLLDFARPQSRLFQEVSINQIIKETLVLVQTNGVNSRIDFSISLDET 474

Query: 116 -----------AKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       ++ LNL + A  S+P        + + +  +   ++K  G      + 
Sbjct: 475 LPALEVDASGLKQVFLNLLINAVQSIPAKGEISIETTRLTMEKIQITIKDTGGGM-SDDV 533

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I      +      +    V  + +++   ++ E        +  +L 
Sbjct: 534 QKKIFMPFFTTKSQGTGLGLSIVQRIINDHSGDVIIESKIHQGTKVMIILP 584


>gi|291568899|dbj|BAI91171.1| two-component hybrid sensor and regulator [Arthrospira platensis
           NIES-39]
          Length = 953

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/249 (9%), Positives = 60/249 (24%), Gaps = 36/249 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54
           + K +     +  L     + + H++ +P+  I    E L E  +      +   + +I 
Sbjct: 556 LQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNSNQHHAIAMIE 615

Query: 55  LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105
            S    +  +  +             Y   V           +           ++++  
Sbjct: 616 KSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAFTKQINIEINIP 675

Query: 106 GE-----KIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSL 151
                      +R   ++L+NL   A     +               +   +     FS+
Sbjct: 676 QALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAAISTPQSIYFSV 735

Query: 152 KINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
             NG      +   ++                   +    V  +   +   +        
Sbjct: 736 IDNGIGIAPDDLN-KLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGK 794

Query: 206 NVVLSALLE 214
               +  L 
Sbjct: 795 GSCFTVYLP 803


>gi|284052794|ref|ZP_06383004.1| two-component hybrid sensor and regulator [Arthrospira platensis
           str. Paraca]
          Length = 549

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/249 (9%), Positives = 60/249 (24%), Gaps = 36/249 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54
           + K +     +  L     + + H++ +P+  I    E L E  +      +   + +I 
Sbjct: 152 LQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKEGILGALNSNQHHAIAMIE 211

Query: 55  LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWT 105
            S    +  +  +             Y   V           +           ++++  
Sbjct: 212 KSGKHLLELISDILDISKIEAGKLELYLTEVRVQELCTSSLTLVNHLAFTKQINIEINIP 271

Query: 106 GE-----KIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSL 151
                      +R   ++L+NL   A     +               +   +     FS+
Sbjct: 272 QALEKTLIKVDNRRLRQVLINLLSNALKFTHKSGKINLNVGIKTSPNAAISTPQSIYFSV 331

Query: 152 KINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
             NG      +   ++                   +    V  +   +   +        
Sbjct: 332 IDNGIGIAPDDLN-KLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGK 390

Query: 206 NVVLSALLE 214
               +  L 
Sbjct: 391 GSCFTVYLP 399


>gi|326203106|ref|ZP_08192972.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
 gi|325986752|gb|EGD47582.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium papyrosolvens DSM 2782]
          Length = 594

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 18/228 (7%), Positives = 53/228 (23%), Gaps = 24/228 (10%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAI 61
            S  L  L     + + H+  +P+  I  S+E L++         +     I   +    
Sbjct: 365 ESERLEQLRKDFIANVSHEFRTPLTVIKGSIEALNDGAIEKKEDIERYYSRILSETKILQ 424

Query: 62  IRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             +  +                              ++ +        +   +      +
Sbjct: 425 RLVGDLLELSRLQSGKISVNEEKVHIPSLLSDVTKSMQTIAVKKQISIEYSPIEAVPPVL 484

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
                  ++       A    P   K++I +          +   G      E    + +
Sbjct: 485 GDYDRLRQLFTIFIDNAIKYSPEKTKISIEIAVKGT-LEIKIADKGYGISEEELPYVWER 543

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +     +   +       L   +   +  +   +    ++  L 
Sbjct: 544 FYKTDKSRESNGTGLGLSIAKHLIQLHGGNVTMQSSLEEGTTVTVYLP 591


>gi|253700434|ref|YP_003021623.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775284|gb|ACT17865.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 773

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 66/243 (27%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           +A      +  M+ +  L   I HD  + +  I+    LL    D+     +  + I  +
Sbjct: 378 LAIEQLRQVQKMEAIGRLAGGIAHDFNNLLTVINGYSTLLVRSLDKGSPTHKEAEQILRA 437

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEKI 109
              A    + +            ++ +    + ++  +       +          G   
Sbjct: 438 GERAADLTRQLLSFSRRQIMEPRVLNINKQVRAVQKMLERLIGEHIGLVTTLSEDAGFVK 497

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKIN 154
               +  +I++NL + A  +   G  + +S  +                 +    S+   
Sbjct: 498 MDPGQMEQIVMNLIVNARDASETGAVIAMSTDNVDLDQNFSHLHPGSVPGSYVRLSVADQ 557

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E    + +    +        +    V  +  ++   +            +  
Sbjct: 558 GQGM-TEEVKQHLFEPFFTTKEMGRGTGLGLATVYGIVKQSGGYIEVVSEPGRGACFNIY 616

Query: 213 LEK 215
           L +
Sbjct: 617 LPR 619


>gi|168187267|ref|ZP_02621902.1| sensor histidine kinase [Clostridium botulinum C str. Eklund]
 gi|169294809|gb|EDS76942.1| sensor histidine kinase [Clostridium botulinum C str. Eklund]
          Length = 733

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 65/231 (28%), Gaps = 19/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +N       +  +  + + I HDI + +  I  S+ELL +   ED+V+            
Sbjct: 359 RNKFIENEKLKNMGEMAAGIAHDINNILTPIIGSVELLKDKYNEDKVISKQLKVIEMCTY 418

Query: 63  RLKF----------MRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVS 103
            +               +       +    + D   + ++            ++    + 
Sbjct: 419 DVTNIISKLKKLTVSCSSNDMIDIFNVNEVILDAIALTKNKWLNGSILDGVKINIFTNLD 478

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     E  ++++N+   A  ++ + G++ IS  D  +  +  ++ NG       +
Sbjct: 479 SNERIQGNITEIREVIINIISNAVDAIEKDGQIRISTVDKDDYVVIEIEDNGVGINEGIE 538

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       +       +  +   +        L 
Sbjct: 539 NRIFQPFFTTKGKKGSGLGLSIAYKIIQSIGGNIRCKSAKNKGTKFIIKLP 589


>gi|149278122|ref|ZP_01884261.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
 gi|149231320|gb|EDM36700.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
          Length = 815

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR-LSSMSAIIRLKFMRLAFG 72
           S + H++ +P+ ++   ++LL      ++       +  +         +   F+ ++  
Sbjct: 598 SMVSHELKTPLTSLKGYVQLLNMRSKKEDNEFAVSNLNKVELQIKKMTAMINSFLNVSRL 657

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--------EKIDLSRERAKILLNLFM 124
            +G +   +   DI Q+I + I    ++  S                  +  ++L NL  
Sbjct: 658 ESGKIHVNMEQFDIGQLISEVIEDAYQIYSSHELNLIPAEPLMVFADREKIEQVLTNLLS 717

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            A    PRG  VTIS     ++    +   G   R  +   ++ D            I  
Sbjct: 718 NAVKYSPRGKTVTISYTLRDDQVEVCVSDEGMGIRTQD-KDRLFDRFYRVDSTHTQNISG 776

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I  Y    L   +  R+  E            + 
Sbjct: 777 FGIGLYLCAELIRRHDGRIWVESQKGVGSQFYFSIP 812


>gi|94264434|ref|ZP_01288223.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455124|gb|EAT05346.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 704

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS----- 56
            K+  F  S+ +L       + HD+  P+  I++ + LL+    +    +   +      
Sbjct: 467 EKSAEFQRSNAELE-QFAYVVSHDLRQPLRMINSYMGLLERDLNDKLTDETREMMGFAVG 525

Query: 57  --SMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  + +  +  +                     I  +  D    +  V++S    +
Sbjct: 526 GARRMDQMLVSLLEYSRVGRKGEPMAPLASRQPVDEAIRFLEPDIAEANATVRISGQWPE 585

Query: 109 IDLSRE-RAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165
           I  SR+   ++  NL   A           + +          FS+  NG      + F 
Sbjct: 586 IVASRDEFTRLWQNLIGNALKYRDPDRPPDVDIAVTPEDGGWRFSVADNGIGIDPQQ-FD 644

Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
           ++             +   I       +   +  R+  E             L K
Sbjct: 645 RLFKVFQRLHARDKYEGTGIGLAVARKIVERHGGRIWVESEGAGQGCRFIFTLPK 699


>gi|91215565|ref|ZP_01252536.1| sensory transduction histidine kinase [Psychroflexus torquis ATCC
           700755]
 gi|91186517|gb|EAS72889.1| sensory transduction histidine kinase [Psychroflexus torquis ATCC
           700755]
          Length = 488

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 19/231 (8%), Positives = 71/231 (30%), Gaps = 22/231 (9%)

Query: 6   CFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------Q 51
              +S++ L           +  ++ H+I +P+  +  S++  +     ++        +
Sbjct: 253 ELEISALKLAKTEREEAWRQMARQVAHEIKNPLTPMRLSMQSFERKFNPNDPQIKERVNE 312

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKI 109
             +                  +           +  +++     I  +  +  +   E I
Sbjct: 313 FSKTIVQQIDNLSAIASAFSDFAKMPAQQNETLNAVEILRLALEIFNENHIHFNPEKENI 372

Query: 110 DLSRERAKILLNLFM---VAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  +R +++  +      A  +        + + +   +++ + S++ NG+     +  
Sbjct: 373 KIKFDRNQLIRIITNLVKNALQATEHLENPVIEVKISTQEDDVMISVEDNGSGIPI-DMQ 431

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I +    +      +    V  +    K  +      +   + +  L K
Sbjct: 432 ERIFEPRFTTKSSGMGLGLGMVKNIIETYKGDIKLTSKLEEGTIFTLKLPK 482


>gi|91774538|ref|YP_544294.1| multi-sensor signal transduction histidine kinase [Methylobacillus
           flagellatus KT]
 gi|91708525|gb|ABE48453.1| multi-sensor signal transduction histidine kinase [Methylobacillus
           flagellatus KT]
          Length = 708

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 19/229 (8%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           +I     +    A   +  R+ H+I +P+  I  S E ++             + S +  
Sbjct: 475 DITQMAQAQRDAAWAEVARRLAHEIKNPLTPIQLSAERIEHKLAAKLSKADAEMLSRATT 534

Query: 62  IRLKFMRLAFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +                       VD    + D+  + E      +         
Sbjct: 535 TIVSQVNAMKAMVNEFSEYARLPALSLDTVDLRQLVQDVLALYEATSIQIRVDIPPELPT 594

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFT 165
               +    ++L NL   A  +L R  +  I +            +K NG      E  +
Sbjct: 595 VHGDATMLRQVLHNLLQNAQDALERHPQPEIVISCRLANECVKLCVKDNGAGFPL-EILS 653

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  + +      +    V  +  E+K  +  E ++    +++  + 
Sbjct: 654 HAFEPYMTTKRHGTGLGLAIVKKIIEEHKGSIKVENLESGGAIVTVTIP 702


>gi|17227678|ref|NP_484226.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17135160|dbj|BAB77706.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 715

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 63/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+ AI    +LL E  ++         +          +         +  
Sbjct: 341 AVLSHELRTPLNAILGWSKLLQERKLDPTRTFQALATIERNATLQVQLIEDLLDISRILQ 400

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWT----------------GEKIDLSRERAKILLNLF 123
              + +I +V    + +     +                   G+ +  S    +++ NL 
Sbjct: 401 GKLVINITKVNLVTVILAALETMRLAAESKLIQVLTNFPPNIGQVMGDSARLQQVVWNLL 460

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178
             A    P GGK+ +++   +      +   G   +         + +  D +       
Sbjct: 461 SNAVKFTPNGGKIEVTLDKMEGYAQIVVSDTGKGIQPEFLPYVFDYFRQADSSSTRRFGG 520

Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
             +    V  +   +   +  +   ++     +  L 
Sbjct: 521 LGLGLAIVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557


>gi|302340427|ref|YP_003805633.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637612|gb|ADK83039.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 390

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 79/237 (33%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
            +     +   +     + S + H+I +P+  I ++++LL E         + + +  + 
Sbjct: 145 QEAKRLEIEKRLKTKEAILSTLAHEIRTPLTVIQSTVDLLIEERIGPLEERQHQFLSSVG 204

Query: 55  LSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWT 105
            +    +                       +D    + ++   +     A    ++ S+ 
Sbjct: 205 SNVQRLVTLSDTILASIKVESAWFTIKVKPIDIRKVIKNVALHMRPILEAKGIELRYSFP 264

Query: 106 G---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         ++L+NL   A   + RGG V ISV +++   + S+  NG+  R  E
Sbjct: 265 KLLSRPPADEGWIHQVLVNLVHNAVKHMRRGGSVIISVNENEQAVVVSVNDNGSGIRTGE 324

Query: 163 KFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +           ++   +    V  +  ++  ++    ++     +S  L 
Sbjct: 325 QPQVFTEFFQGGILSGAQLEGAGLGLAIVKRVIEKHNGKVYVGSVEGSGTTVSFTLP 381


>gi|291547320|emb|CBL20428.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 551

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 72/232 (31%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++   +    L     + + H++ +P+ +I    E++ +  ++DE +++          R
Sbjct: 312 DVTEKVEREQLRREFSANVSHELKTPLTSISGFAEIMQDGFVKDEDVKVFAGRIYKEAQR 371

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--------- 114
           L  +         +D        E++    +  D    +    EK ++            
Sbjct: 372 LIRLVGDVIRISRLDEGGLPYQWEKLDLYSLTHDIFSTLHEAAEKQEVHMYMEGGSTVLD 431

Query: 115 -----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++L N+   A     RGG+V + ++D ++    +++  G      E   +I +
Sbjct: 432 TVPTIMEEVLYNVCDNAVKYNRRGGEVFVRLKDGEDAVRVNVRDTGIGI-PKEDQERIFE 490

Query: 170 GN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       I    +    V         RL           +     K
Sbjct: 491 RFYRVDKSHSKEIGGTGLGLSIVKHGVKTLNGRLWLNSEPGQGTEILMEFPK 542


>gi|291526619|emb|CBK92205.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 347

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSL----------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
           +                    +  +    +K +      E++  +        I +NL  
Sbjct: 188 NQNIPMKKTEFRLDEQIRQAFLSLETKWTEKEIGFQVEMEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|317050263|ref|YP_004111379.1| PAS sensor protein [Desulfurispirillum indicum S5]
 gi|316945347|gb|ADU64823.1| PAS sensor protein [Desulfurispirillum indicum S5]
          Length = 1070

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 56/240 (23%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------IR 54
           + +       S  L ++  + + H++ +P+ AI    E+L E        ++      I 
Sbjct: 554 LQEARRQAEDSSQLKSMFLANMSHELRTPLNAILGYSEMLQEDAAVMGAQEMVGDLAKIH 613

Query: 55  LSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +    +  +                Y   V+    + D+   I   +  +K       G
Sbjct: 614 SAGEHLLRLINDVLDISKIEAGKMDVYLEEVNIARLVRDVADTITPLVRKNKNHFHLECG 673

Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLAR 159
           +          +  +IL NL   A      G            E     F +   G    
Sbjct: 674 QNLGAMHTDLTKVRQILFNLLNNAAKFTQNGSITLRVQCQEDREIPTISFQVIDTGIGIE 733

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +                    +        +H     +               L 
Sbjct: 734 QQRLSSLFQSFTQADVSISRKYGGTGLGLAISQSYSHLLGGGITAHSKPGAGSTFCLTLP 793


>gi|164688487|ref|ZP_02212515.1| hypothetical protein CLOBAR_02132 [Clostridium bartlettii DSM
           16795]
 gi|164602900|gb|EDQ96365.1| hypothetical protein CLOBAR_02132 [Clostridium bartlettii DSM
           16795]
          Length = 434

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 68/213 (31%), Gaps = 17/213 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFM-------- 67
           S + H+I +PI  I     LL +       +DE + +I   +         +        
Sbjct: 215 SNVSHEIKTPIATIQGFSNLLKDDTLSKEEKDEYLDIIISETSRISNLTSNILKLTKLET 274

Query: 68  -RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMV 125
             +    T           +  +  D    +  + +     +I  + E   ++ +NL   
Sbjct: 275 QGIITDKTSFYLDEQLRHSVLILQRDLAQKNLDIDIDLDEVQIYSNEELLQQVWINLLSN 334

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQ 182
           A      GGK++I + D+++     +  NG   +       F +    +   + + + + 
Sbjct: 335 AIKFTNDGGKISIQLMDTEDTATVKITDNGIGMKAESLNHIFDKFYQEDKSHSSNGNGLG 394

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              V  +       +  + +       +  L K
Sbjct: 395 LPLVKRIVDLCDGTIRVKSLLGEGSSFTVELPK 427


>gi|94985371|ref|YP_604735.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
 gi|94555652|gb|ABF45566.1| PAS/PAC sensor signal transduction histidine kinase [Deinococcus
           geothermalis DSM 11300]
          Length = 941

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 69/231 (29%), Gaps = 19/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRLS 56
           + +    ++ +L A     + HD+ +P+  I    +LL +             + ++  +
Sbjct: 708 RTLELQDANRELEAF-SYSVSHDLRTPLRHIVGFGDLLRKDAAGHLTPKGERYLSVMTDA 766

Query: 57  SMSAIIRLKFMRLAFGY------TGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKI 109
           +      +  +             G VD    + +  + +  D    + +  +       
Sbjct: 767 AERMSQLIDDLLEFSRMGRQELRRGPVDLSAVVREVWQNLEPDRAGRNVQFDLGPLPTVQ 826

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ--- 166
             +    ++  NL   A        +  +SV   ++    ++ +  N   F  ++     
Sbjct: 827 GDAALLTQVFANLLSNALKYTRTREQAQVSVMAQESPQEVTVTVRDNGVGFDPRYADKLF 886

Query: 167 --IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +     +   I    V  +   +  R+  E +       S  L K
Sbjct: 887 GVFQRLHRAEEFEGTGIGLANVRRIVTRHGGRVRAEAVPGQGAAFSVTLPK 937


>gi|148264474|ref|YP_001231180.1| integral membrane sensor hybrid histidine kinase [Geobacter
           uraniireducens Rf4]
 gi|146397974|gb|ABQ26607.1| integral membrane sensor hybrid histidine kinase [Geobacter
           uraniireducens Rf4]
          Length = 656

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 29/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAI 61
             M+ +  L   + HD  + +  I     L+     ED  +             +++   
Sbjct: 284 QKMEAIGTLAGGVAHDFNNLLTVITGFGNLMQMNLQEDTQLMTYADQILIASDRAAVLTK 343

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
             L F R        ++  + +  +E ++   I+ D   +V   GE + +  +     +I
Sbjct: 344 RLLTFSRNQIINPSPMNINVIIKSLENILVRVISEDVEFKVDLGGENLTVMTDSGLIDQI 403

Query: 119 LLNLFMVAHASLPRGGKVTIS---------------VQDSKNENIFSLKINGNLARFPEK 163
           ++NL   A  ++P GG +TI                        + ++   G+     E 
Sbjct: 404 IINLAANARDAMPNGGMLTIRTNIAELGGESLSPGDHGKPGKYALITVTDTGSGM-EEET 462

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +        +    V  L  ++K  +  E            L 
Sbjct: 463 VERIFEPFFTTKEVGKGTGLGLSMVYGLVKQHKGVIRVESALGRGTTFRIYLP 515


>gi|88703694|ref|ZP_01101410.1| two-component sensor histidine kinase [Congregibacter litoralis
           KT71]
 gi|88702408|gb|EAQ99511.1| two-component sensor histidine kinase [Congregibacter litoralis
           KT71]
          Length = 492

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 72/221 (32%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRL---- 69
           L + + HD+ +P+ +I   LE L     +   + + ++     ++     +  +      
Sbjct: 270 LIANVSHDLRTPVSSIQGFLETLMVKDLDANAQTDYIRTAHKHALRLNELISELFELSTL 329

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----RAKILLN 121
              +         ++ L     +  +  A ++ + ++    +  L          ++L N
Sbjct: 330 ESGSVEPHWENFPVMELIQDIVLDHEVSARERGITLTTEAPRESLQVRADIAMIHRLLEN 389

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ 175
           L   A    P+GG++TI V +        +  NG+     +   +I +   +        
Sbjct: 390 LIHNALRHTPQGGEITIRVIEDAQRVQVQVSDNGDGIASQDIP-RIFERFYQRDTDSTTD 448

Query: 176 --IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I    +    V  +   ++ ++            S  L 
Sbjct: 449 SSIGGTGLGLAIVKRIVELHRSQIAVRSESTRGTEFSFWLP 489


>gi|113474471|ref|YP_720532.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
 gi|110165519|gb|ABG50059.1| response regulator receiver sensor signal transduction histidine
           kinase [Trichodesmium erythraeum IMS101]
          Length = 395

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 24/259 (9%), Positives = 55/259 (21%), Gaps = 46/259 (17%)

Query: 1   MAKNICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           + +N        +  A      +  + + H++ +P+ AI    E+L E          I 
Sbjct: 129 LKENKRLKQEKHEAEAANRAKSVFLANMSHELRTPLNAIIGYSEILLEDAHSLGSKDFIH 188

Query: 55  LSSMSAIIRLKFMR------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
             +         +                           V     L  I+ +IE    +
Sbjct: 189 DINNIHTSGKHLLTIINDILDLSKIEAGKMDVHWESVNIMVLIENVLATIQPLIEQNNNI 248

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQ 141
            + +        +    +  +++LNL   A                              
Sbjct: 249 LEIICEDNQEPIMADPNKMRQVILNLLSNAAKFTENGKIILKVKVANNDEDFISQNRDCN 308

Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKI 195
            +    I S+   G      EK   +                   +              
Sbjct: 309 FTDKVLILSVADTGIGI-SEEKIDSLFQPFTQADNSTTRKYGGTGLGLAISRHFCKMMGG 367

Query: 196 RLLPEIIDDHNVVLSALLE 214
            +      +   + +    
Sbjct: 368 DITVVSEVNKGSIFTVKFP 386


>gi|326404272|ref|YP_004284354.1| putative two-component sensor histidine kinase [Acidiphilium
           multivorum AIU301]
 gi|325051134|dbj|BAJ81472.1| putative two-component sensor histidine kinase [Acidiphilium
           multivorum AIU301]
          Length = 549

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 77/244 (31%), Gaps = 29/244 (11%)

Query: 1   MAKNICFNLSSM--DLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +A+ +  +  ++   + A+    + + H+I +P+ +I +++E +          +L  + 
Sbjct: 305 LARALEESAHALWARMDAIERFAADVAHEIKNPLSSIRSAVETVRRTDDPARAARLFDII 364

Query: 57  SMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           S       +              ++      VD    L  + ++ +     D  V V   
Sbjct: 365 SQDVRRLDRLISDISDSSRLDSEMSRTALEPVDLAPILAALAEIHQSTREGDAPVMVLDA 424

Query: 106 GEK----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF- 160
            +             ++L NL   A +  P+ GK+ +  + + +    +++  G      
Sbjct: 425 PKTGLVVRGAEGRLVQVLRNLIGNAISFSPQRGKIWLRGRVTGSIVELAVEDEGPGIPDA 484

Query: 161 --PEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLSA 211
                F +      +S        +       +   ++ R+  E   D            
Sbjct: 485 KLDHVFDRFYSERPQSEGFGNHSGLGLSISRQIVEAHQGRITAENRRDPEGAVIGARFVI 544

Query: 212 LLEK 215
            L +
Sbjct: 545 RLPR 548


>gi|310819568|ref|YP_003951926.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309392640|gb|ADO70099.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 831

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 57/240 (23%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQL 52
            +       ++ L     S   H++ +P+  +  ++ELL              +   ++ 
Sbjct: 585 EQTQKELREAITLRDQFLSMASHELRTPLTPLKATVELLLRQSDENQVLPLERQRSTLER 644

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVS 103
           +R         +  M       G   ++                ++          +Q+ 
Sbjct: 645 LRRQVDRLTRLVSDMLDMARIQGGRLAMRRASMDLTALAREVADRIQHSSRERSAPIQLE 704

Query: 104 WTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                   +   +   ++L NL   A    P    + + +  + +  +  +K  G     
Sbjct: 705 LPEGPLLGVWDEQRLDQLLTNLIENAARYSPPDAPIQVCIGSTADRALIEVKDQGIGVPA 764

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
               +                    +       +   +   +             S  L 
Sbjct: 765 ESLPSLFTPFYRARNAAQHYAGGLGLGLAICREIVERHGGTIQASSAGPGQGTRFSVSLP 824


>gi|300955799|ref|ZP_07168141.1| PAS domain S-box [Escherichia coli MS 175-1]
 gi|300317345|gb|EFJ67129.1| PAS domain S-box [Escherichia coli MS 175-1]
          Length = 778

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 52/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +       +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFTLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|295704138|ref|YP_003597213.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
 gi|294801797|gb|ADF38863.1| two-component sensor histidine kinase [Bacillus megaterium DSM 319]
          Length = 476

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 60/221 (27%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRLSSMSAIIRLKFM---- 67
             +   H++ +P+  + +S+  L+            +++  ++         +  +    
Sbjct: 249 FVADASHELRTPLSVMLSSINALEMQEEVTEDPFSKKLINNMKAEVKRMTSLVSDLLTLA 308

Query: 68  --------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                   +    +  +      +  +E +        + V                +++
Sbjct: 309 RSDSNKVEKAMMLFDITDAVQKVMESVETLAISKHIDLQLVDTPEKLVVTGDQERLTQLI 368

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
             L   A       G V I V    +E I  ++  G      E   +I D          
Sbjct: 369 YILLDNAIKYTTPHGNVNIQVVQHGSECILKVRDTGVGIHPDE-KDRIFDRFYRADKSRS 427

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  H +       +   +K ++  E   +     +  L 
Sbjct: 428 RQMGGHGLGLAIAKWIVETHKGKIDVESEQEKGSTFTVRLP 468


>gi|291548816|emb|CBL25078.1| Signal transduction histidine kinase [Ruminococcus torques L2-14]
          Length = 347

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|291534750|emb|CBL07862.1| Signal transduction histidine kinase [Roseburia intestinalis M50/1]
          Length = 347

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|302877271|ref|YP_003845835.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
 gi|302580060|gb|ADL54071.1| multi-sensor signal transduction histidine kinase [Gallionella
           capsiferriformans ES-2]
          Length = 706

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 63/224 (28%), Gaps = 19/224 (8%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLSSMS 59
           L +    A   +  R+ H+I +P+  I  S E L        +      + +  +     
Sbjct: 477 LQTERQAAWGEVARRLAHEIKNPLTPIQLSAERLQYKLSSKLDETDAKLLQRATQTIVSQ 536

Query: 60  AIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                  +     Y          +D    + ++  + E               E    +
Sbjct: 537 VGAMKNMVTDFADYARGPVLKLLRLDVHKLIKEVLGLYEANAVPISLDLSEGRAEVNGDA 596

Query: 113 RERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
               ++L NL   A  +L    +  I    Q  + E    +  NG          ++ + 
Sbjct: 597 TRLRQVLHNLLQNAQDALSGVEQPKIILSSQIVQGEIHLRVLDNGTGFSENALS-RVFEP 655

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +      +    V  +  E+  ++  E        ++  L 
Sbjct: 656 YMTTKTKGTGLGLAIVKKIIEEHGGQIRVENNASGGACVNISLP 699


>gi|239906480|ref|YP_002953221.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239796346|dbj|BAH75335.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 863

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 63/248 (25%), Gaps = 37/248 (14%)

Query: 4   NICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                L S  + A        +  + + H+I +P+  +   L+LLD     DE  + +  
Sbjct: 463 QAEEALQSAKIAAESANKAKSVFLANMSHEIRTPLNGVLGMLQLLDTTAPNDEQKEYLLG 522

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKR 99
           +  S     + +      +      + + ++E  I++                    +  
Sbjct: 523 AVQSTNRLARLLSDILDISRIEAGRMDIVELEFNIQNTWDSIKELFALEARRKGLVLEFG 582

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--------ISVQDSKNENIFSL 151
                    I       +IL NL   A     +G             S + S    + ++
Sbjct: 583 CVKDLPLLLIGDEVRLRQILFNLVGNAVKFTEKGKIRIDASLLPLLPSSKSSAIRVLITV 642

Query: 152 KINGNLARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G                   G+         +    V  L +     +  +      
Sbjct: 643 HDTGVGIPEEYIKDIFEPFVQADGSYTRRFQGAGLGLSIVRRLVNLLGGDIAIDSTLGEG 702

Query: 207 VVLSALLE 214
             +   L 
Sbjct: 703 TTVYLSLP 710


>gi|238922419|ref|YP_002935933.1| hypothetical protein EUBELI_20655 [Eubacterium eligens ATCC 27750]
 gi|238925826|ref|YP_002939344.1| sensor histidine kinase [Eubacterium rectale ATCC 33656]
 gi|238874091|gb|ACR73799.1| Hypothetical protein EUBELI_20655 [Eubacterium eligens ATCC 27750]
 gi|238877503|gb|ACR77210.1| sensor histidine kinase [Eubacterium rectale ATCC 33656]
          Length = 347

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|254449018|ref|ZP_05062472.1| sensor protein PilS [gamma proteobacterium HTCC5015]
 gi|198261412|gb|EDY85703.1| sensor protein PilS [gamma proteobacterium HTCC5015]
          Length = 503

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 20/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRL 55
             ++   +    L +L  L + I H+I +P+ AI+++ +LLDE       +  +  +I  
Sbjct: 275 TSDVAKEMQDQKLASLGRLTASIAHEIRNPLSAINHAAQLLDESPQIGDDDSRLTDIITQ 334

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKID 110
            S      ++ +        S    I L             + ++      +        
Sbjct: 335 QSKRLNAMVENIMQLSRKHKSTPETIDLDSWLGAFRIDFCTEMKLPGSQFFLDIQVPHQQ 394

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLKINGNLARFPEK 163
              +     ++L NL   +          T    +           ++   G+     E 
Sbjct: 395 TLFDTSQLHQVLWNLCSNSIKYGHSEDGKTRIHIECARHATSYLCLNIYDEGSGI-PREV 453

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I +    +   S  +  Y    L   N   L  +  +D     +  L 
Sbjct: 454 ADHIFEPFYTTNSASSGLGLYIAHELCAFNHAELSYQHQEDGG-QFTLRLP 503


>gi|220909141|ref|YP_002484452.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219865752|gb|ACL46091.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 934

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           + +       +     +     + + H++ SP+  I    +LL       E  Q    + 
Sbjct: 546 LQREQEAREQAESANRIKDEFLAVLSHELRSPLNPILGWAKLLQTRPFAPEKAQQALQTI 605

Query: 58  MSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSW 104
                    +                     VD +  +      V     A   +++   
Sbjct: 606 ERNAKLQAQLIEDLLDVSRILRGKMVLNVCPVDLVTVIEAALETVQLSAEAKGIQLERHL 665

Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +   +S +     +I+ NL   A    P G +V I ++    E    ++  G      
Sbjct: 666 ANDIGFISGDAGRLQQIVWNLLSNAIKFSPPGHRVDIRLERVGAEAQMQVRDTGKGINPS 725

Query: 162 EKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                    +  D           +    V  L   +   +  E   +         L 
Sbjct: 726 FLPHVFEYFRQEDSRTTRKFGGLGLGLAIVRYLTELHGGTVQAESGGEGQGATFKVRLP 784


>gi|166033277|ref|ZP_02236106.1| hypothetical protein DORFOR_03003 [Dorea formicigenerans ATCC
           27755]
 gi|166027634|gb|EDR46391.1| hypothetical protein DORFOR_03003 [Dorea formicigenerans ATCC
           27755]
          Length = 347

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|119946935|ref|YP_944615.1| hybrid sensor and regulator fused [Psychromonas ingrahamii 37]
 gi|119865539|gb|ABM05016.1| Hpt sensor hybrid histidine kinase [Psychromonas ingrahamii 37]
          Length = 968

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 61/246 (24%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
            KNI   L   ++        +   + + H+I +P+  +    EL+ E  +  E  + + 
Sbjct: 419 RKNIQQALHEKEIAVKASQAKSEFLATMSHEIRTPMNGVLGMTELVLETELSSEQRRFME 478

Query: 55  LSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----DK 98
           +   S    L  +     ++             +     +  +   +           + 
Sbjct: 479 MIKSSGFGLLDIINDILDFSKIEAGKLQLDNHPMQLQELIKHLVTSLSPLAKKKGLQLNY 538

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKIN 154
            +        +       ++L NL   A     RG      V      +       ++ +
Sbjct: 539 NLPQEMDTWVLGDRIRLRQVLTNLISNAIKFTQRGEVLVSAVIFEQSATALSLQIRVRDS 598

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G     PE   +I +                 +       L       +           
Sbjct: 599 GIGI-APENQDKIFESFSQADSSTTRNYGGTGLGLAISKQLIEMMGGSIGFSSELGQGTT 657

Query: 209 LSALLE 214
               L+
Sbjct: 658 FWFDLK 663


>gi|167849925|ref|ZP_02475433.1| sensory box histidine kinase [Burkholderia pseudomallei B7210]
 gi|167915237|ref|ZP_02502328.1| sensory box histidine kinase [Burkholderia pseudomallei 112]
          Length = 709

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 468 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 524

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 525 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 584

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 585 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 643

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 644 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 695


>gi|53717169|ref|YP_105595.1| sensory box histidine kinase [Burkholderia mallei ATCC 23344]
 gi|167742919|ref|ZP_02415693.1| sensory box histidine kinase [Burkholderia pseudomallei 14]
 gi|167923067|ref|ZP_02510158.1| sensory box histidine kinase [Burkholderia pseudomallei BCC215]
 gi|52423139|gb|AAU46709.1| sensory box histidine kinase [Burkholderia mallei ATCC 23344]
          Length = 723

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 482 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 538

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 539 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 598

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 599 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 657

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 658 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 709


>gi|320016102|gb|ADV99673.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 908

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALYMLETTLSQHQIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I  +         +  NG      +
Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVQGEWLNVDVWDNGPGVTIGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883


>gi|313124173|ref|YP_004034432.1| sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
 gi|312280736|gb|ADQ61455.1| Sensor protein [Lactobacillus delbrueckii subsp. bulgaricus ND02]
          Length = 530

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 60/236 (25%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           M   +   +          S + H++ +P+  I   L +L   G +D  +          
Sbjct: 268 MLDRMQKYIEQQK---QFVSDVSHELRTPVAVIEGHLSMLKRWGKDDPQVLEESIDASIS 324

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVS 103
             + ++      +   +  +++  Y  ++   + +          +  D ++      + 
Sbjct: 325 EAERMKHLIQEMLDLTRAEQISVHYPNAITEPMEVLTRVVGDMGMVHPDFKISLEVEDLD 384

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +         +IL+ L            ++ ++   S  E    ++  G      +K
Sbjct: 385 PDTKIQIFQGHLEQILIILIDNGIKYSTDRKEIAVAAGQSGQEMQIVVQDYGEGISDEDK 444

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               + +       L       +  E +            
Sbjct: 445 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVESYHGTIDVESVLGQGSQFRITFP 500


>gi|296115545|ref|ZP_06834174.1| PAS/PAC sensor signal transduction histidine kinase
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977905|gb|EFG84654.1| PAS/PAC sensor signal transduction histidine kinase
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 502

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
           M +          L A+  + + + H++  P+ AI N L     LL +   ++E +Q   
Sbjct: 261 MRQLQAEVTHISRLSAMGEMAATLAHELNQPLTAITNFLNGGRRLLQKGSGQNERVQEAI 320

Query: 55  --------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWT 105
                    +        +F+    G  G       + ++  +           V     
Sbjct: 321 DKAAAQALRAGQIIRSLREFVSRGEGDLGLQSLTALVEEMAVLALVGIAERGINVSFRLD 380

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARF 160
                +  ++ +I   L  +   ++                  +     S+   G     
Sbjct: 381 SNVDQVIADKIQIQQVLLNLIRNAVESMEDCHERRLVVAIDAFEGMARVSVTDTGAGV-R 439

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   ++ +    +      +       +   +  R+  + + +        L 
Sbjct: 440 PEIAGKLFEPFSTTKDHGMGVGLSICRTIVEAHGGRIWAQAVPEGGTCFLFTLP 493


>gi|229092185|ref|ZP_04223366.1| hypothetical protein bcere0021_29750 [Bacillus cereus Rock3-42]
 gi|228691176|gb|EEL44940.1| hypothetical protein bcere0021_29750 [Bacillus cereus Rock3-42]
          Length = 436

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|196037888|ref|ZP_03105198.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|228946827|ref|ZP_04109129.1| hypothetical protein bthur0007_29620 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|196031158|gb|EDX69755.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|228812814|gb|EEM59133.1| hypothetical protein bthur0007_29620 [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
          Length = 436

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|167574056|ref|ZP_02366930.1| sensory box histidine kinase/response regulator [Burkholderia
           oklahomensis C6786]
          Length = 764

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                   +S  L   L + + H++ +P+  I+  +E+L          Q I     SA 
Sbjct: 382 RDARRQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNPAGGALQQQAIDAIDRSAR 441

Query: 62  IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              +               +RL       V  +  +            +D  V  +    
Sbjct: 442 SLSRMVGDILDASSLATGKLRLDAMPVDLVRIVNDVTGALGTAAQAEGLDLTVDCALETC 501

Query: 108 KID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT- 165
            +        ++L NL   A    PRGG+VT+S+  + +     +   G           
Sbjct: 502 IVSGDGERLRQVLSNLLSNAFKFTPRGGRVTVSLMRTDSHATLVVADTGQGISPEFLPHV 561

Query: 166 ----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
               +  DG+  S+     +    V  +A  +  ++             +  L 
Sbjct: 562 FEAFRRADGSPASSRRGLGLGLSIVRHIAELHGGKVEVASAGKRLGTTFTVTLP 615


>gi|160893754|ref|ZP_02074538.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50]
 gi|156864739|gb|EDO58170.1| hypothetical protein CLOL250_01308 [Clostridium sp. L2-50]
          Length = 501

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 60/216 (27%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMR------- 68
           S I HD  SP+ +I   +E + +        ++ +Q++   +M      + +        
Sbjct: 252 SNISHDFRSPLTSIKGYIEAMIDGTIPPDKHEKYLQIVLSETMRLTKLTQGLLELNNFDS 311

Query: 69  -----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                    +      L  +   E   +D       +  +             +++ NL 
Sbjct: 312 FDLQLDKSNFDIKSIILPTINTFEGRCQDKGIYLHAIFHTDNTIVYADRTRIQQVIYNLV 371

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID--S 178
             A    P G ++T+ V +  ++   S+K  G           F +    +     D   
Sbjct: 372 DNAIKFTPEGRQITVQVTEKSDKVYVSVKDEGVGIPPESIKKVFDRFYKTDPSRGKDKTG 431

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +   +               L 
Sbjct: 432 TGLGLAITKEIIKAHGENITLTSKVGEGSEFIFSLP 467


>gi|148975516|ref|ZP_01812387.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3]
 gi|145964944|gb|EDK30195.1| putative sensor histidine kinase [Vibrionales bacterium SWAT-3]
          Length = 684

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 16/236 (6%), Positives = 51/236 (21%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       + +  +L  + + H++ +P+  +    +++ E     +  +  ++   S  
Sbjct: 151 QEAADKAQKASEAKSLFLATMSHELRTPMNGVLGIAQIIKEDSQSADTRKQAQIIIDSGQ 210

Query: 62  IRLKFMRLAFGYTGSVDSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKI 109
             +  +     ++      + L               + +            +       
Sbjct: 211 HLVTILNDILDFSKVEQGKMELELSPFSVTDVVTHLDKTLTPLATDKGISFVIKDNIPTN 270

Query: 110 DL----SRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                 S    +IL NL   A       +          +       +   G      + 
Sbjct: 271 IQLVGDSARTRQILFNLAGNAVKFTESGKVEVEFEIAPTTPPSVNIMVSDTGIGIAEDKV 330

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +    V  L       +      +     +  L 
Sbjct: 331 DHIFTAFEQAELSTTRKFGGTGLGLSIVKQLVELMGGTIDVSSQLNMGTCFTISLP 386


>gi|119961879|ref|YP_946688.1| signal transduction histidine kinase [Arthrobacter aurescens TC1]
 gi|119948738|gb|ABM07649.1| putative signal transduction histidine kinase [Arthrobacter
           aurescens TC1]
          Length = 408

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 62/235 (26%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +A +      + ++     + + H++ +P+GAI    E L+    +        + +   
Sbjct: 117 LADDRTEITRTEEIRNDFVANVSHELKTPVGAISLLAEALEASPDDEEAVRRFAKRMHKE 176

Query: 57  SMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           S      ++ +                +VD    + +     +          V      
Sbjct: 177 SGRLAALVQDIIELSRLQGANVAQQGHAVDINTVITEAVDRSQLPAESKNIQIVVGGHSD 236

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +R  ++  L      A    P   +V + V+  +     S+   G      E   
Sbjct: 237 SLVFGDRDLLVTALRNLIDNAIRYSPENTRVGVGVRTREGVVAISVTDQGEGL-TAEDQE 295

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +    V  +   +   +            +  L 
Sbjct: 296 RVFERFYRVDAARSRHTGGTGLGLSIVKHVVSNHGGEVTVWSQPGQGSTFTIRLP 350


>gi|56420813|ref|YP_148131.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
 gi|56380655|dbj|BAD76563.1| two-component sensor histidine kinase [Geobacillus kaustophilus
           HTA426]
          Length = 597

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 59/236 (25%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 359 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEKEKKEMAKVIYD 414

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVS 103
                       L   R+  G+                 +     + ++           
Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E         ++L NL   A      GG V + ++ S +     ++ +G+     + 
Sbjct: 475 RDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +           +       +   +K  +      +     S  L 
Sbjct: 535 PFVFERFYKADKARTRGRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLP 590


>gi|88857213|ref|ZP_01131856.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
 gi|88820410|gb|EAR30222.1| Signal transduction histidine kinase [Pseudoalteromonas tunicata
           D2]
          Length = 732

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 23/228 (10%), Positives = 57/228 (25%), Gaps = 25/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63
           SS  L +   + + H+I +P+  I   ++LL    +  E    +   + S+ +       
Sbjct: 362 SSEQLKSQFLANMSHEIRTPMNGILGFVQLLQSSHLTPEQEDFLHHINSSSKMLLTIIND 421

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      + L          L  +  + +       +      +            
Sbjct: 422 ILDLSKIEANQLTLHVMPCNLTQILQDVVTLFKPACLAKGIKIEFTANAAYWVYCDEMRV 481

Query: 116 AKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +I  NL   A     +G        I+  D   +   +++  G      +   ++    
Sbjct: 482 KQIFTNLISNAIKFTLKGKVTLTLKKITATDENTQFEVNVEDTGIGI-ADDVIGKLFKPF 540

Query: 172 V------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +              +       L    +  +     +         L
Sbjct: 541 IQAQGDTTRRFGGTGLGLSISKRLIELMQGNISLTSKEHVGTQFLVRL 588


>gi|301163596|emb|CBW23147.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1022

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +LL     + +  + +++ + + 
Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105
            +        + L+   +GSV+      D+ +  +   +  K+   +             
Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A    P+G    +  +         ++  G      +K  
Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDAGIRLYVRDTGIGIPEEKKRK 814

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +       +  E       +  A+L 
Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864


>gi|265764264|ref|ZP_06092832.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256872|gb|EEZ28218.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1022

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +LL     + +  + +++ + + 
Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105
            +        + L+   +GSV+      D+ +  +   +  K+   +             
Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A    P+G    +  +         ++  G      +K  
Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDAGIRLYVRDTGIGIPEEKKRK 814

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +       +  E       +  A+L 
Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864


>gi|237654306|ref|YP_002890620.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thauera sp. MZ1T]
 gi|237625553|gb|ACR02243.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Thauera sp. MZ1T]
          Length = 358

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 65/230 (28%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---M 58
           A+             L+   + H+I +P+G I  S +LL     + ++ +   +      
Sbjct: 127 AREEQLLHQQQANRELI-RNLAHEIKNPLGGIRGSAQLLQHELDDPQLREFTDVIIAEAD 185

Query: 59  SAIIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                +  +  +             + +  + +         +   +     +L+ +R +
Sbjct: 186 RLQDLMNRLLSSHCMMRPASINLHDVLERVRRLILAEFPSIGIVPDYDLSLPELTADREQ 245

Query: 118 ILLNLFMVAHAS-------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           ++  +  +   +                  +VT++ +  K      +  +G      E  
Sbjct: 246 LIQAVLNIVRNAAQALGGHGEILLRTRIARQVTLAKRRHKLALKLQVIDDGPGI-PEEIR 304

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I    V        +          +++  +  +         + LL 
Sbjct: 305 DRIFYPLVSGREGGSGLGLSLAQSFIEQHQGMIEVDSRPGR-TCFTILLP 353


>gi|196032095|ref|ZP_03099509.1| sensor histidine kinase [Bacillus cereus W]
 gi|196042760|ref|ZP_03109999.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|218904352|ref|YP_002452186.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|229122744|ref|ZP_04251953.1| hypothetical protein bcere0016_30360 [Bacillus cereus 95/8201]
 gi|229185422|ref|ZP_04312604.1| hypothetical protein bcere0004_29750 [Bacillus cereus BGSC 6E1]
 gi|195994846|gb|EDX58800.1| sensor histidine kinase [Bacillus cereus W]
 gi|196026244|gb|EDX64912.1| sensor histidine kinase [Bacillus cereus 03BB108]
 gi|218537711|gb|ACK90109.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|228598010|gb|EEK55648.1| hypothetical protein bcere0004_29750 [Bacillus cereus BGSC 6E1]
 gi|228660608|gb|EEL16239.1| hypothetical protein bcere0016_30360 [Bacillus cereus 95/8201]
          Length = 436

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|149277835|ref|ZP_01883975.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
 gi|149231523|gb|EDM36902.1| sensor for ctr capsule biosynthesis; sensor histidine kinase
           [Pedobacter sp. BAL39]
          Length = 684

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 69/212 (32%), Gaps = 18/212 (8%)

Query: 21  RICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
            + H++ +P+ ++   +++L        +      + ++    +    +   F+ ++   
Sbjct: 471 MVSHELKTPLTSLKGYVQVLHGKASKVKDEFASGMLSKVNNQVNKMNAMINGFLSISRLE 530

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLNLFMV 125
           +G +  ++    ++Q+I + I  ++ +      E              +   ++ NL   
Sbjct: 531 SGKILLVMEEFALDQLIAEVIDENEVLFPVHHIEFHRCEGLMLNADRDKIGHVVSNLISN 590

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQ 182
           A         + I      +E I S+K +G      +    F +       + I    I 
Sbjct: 591 AAKYSSAESVIEIHCSREGDEAIVSVKDSGIGIPAEDHGRLFERYYRVESNNLISGFGIG 650

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            Y    +   +  R+  E       V    L 
Sbjct: 651 LYLSAEIIERHHGRIWVESEVGKGSVFHFSLP 682


>gi|126656663|ref|ZP_01727877.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621883|gb|EAZ92591.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 820

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53
           + +       +     +     + + H++ SP+  I     LL     +     + +  I
Sbjct: 441 LEREQAARKEAEQANRIKDEFLAMLSHELRSPLNPILGWSTLLQTKKFDSATTQKGLSTI 500

Query: 54  RLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             ++      +  +                    V  +    ++ +   +  ++  R  +
Sbjct: 501 ERNAKLQTQLIDDLLDIARILRGKLKLKETTVNLVTVIEEGIEVVRRAAEAKSIALRFNL 560

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             + +         ++L NL   A    P GG+V + ++   ++   ++   G   +   
Sbjct: 561 IDSCQVRGDEGRLEQVLWNLLSNAVKFTPEGGQVIVQLEVLHDQACITVVDTGKGIKPEF 620

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                                  +    V  L   +   +  E   +      +    
Sbjct: 621 LPDLFQTFCQEDISITRNYGGLGLGLAIVKYLVDAHGGSITAESAGEGQGATFTVQFP 678


>gi|60682125|ref|YP_212269.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493559|emb|CAH08347.1| putative two-component system sensor kinase/response regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1022

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +LL     + +  + +++ + + 
Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105
            +        + L+   +GSV+      D+ +  +   +  K+   +             
Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A    P+G    +  +         ++  G      +K  
Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDAGIRLYVRDTGIGIPEEKKRK 814

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +       +  E       +  A+L 
Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864


>gi|53713918|ref|YP_099910.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216783|dbj|BAD49376.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1022

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S  L +   + + H+I +P+ AI    +LL     + +  + +++ + + 
Sbjct: 636 LRQAKLLAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMNSEEQGDKEEYMQIINTNN 695

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----------- 105
            +        + L+   +GSV+      D+ +  +   +  K+   +             
Sbjct: 696 ELLLKLINDILDLSKLESGSVELKYEEFDLAEYFDSMASSMKQRVTNPKVQLVAVNPYSV 755

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+++ N    A    P+G    +  +         ++  G      +K  
Sbjct: 756 CRVRLDKNRVAQVVTNYVTNAIKYTPQGTIE-MGYEVVDAGIRLYVRDTGIGIPEEKKRK 814

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +       +  E       +  A+L 
Sbjct: 815 VFHRFEKLDEFAQGTGLGLSICKAITESMGGSVGFESEYSRGSLFWAVLP 864


>gi|117928473|ref|YP_873024.1| PAS/PAC sensor signal transduction histidine kinase [Acidothermus
           cellulolyticus 11B]
 gi|117648936|gb|ABK53038.1| PAS/PAC sensor signal transduction histidine kinase [Acidothermus
           cellulolyticus 11B]
          Length = 335

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 51/214 (23%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRLA- 70
           L S + H++ SP+ ++      L              +++ +   +      +  +    
Sbjct: 115 LISTVAHELRSPLTSVKGFTATLLHKWDRFTDEQRKLMLETVNADADRVTRLIGELLDVS 174

Query: 71  ---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILL 120
                          V +        +V          V V     ++ L  ++  ++L 
Sbjct: 175 RIDADRLELHRQVVDVGAAAARVVAGRVAAGESPQRFSVIVDGELPEVWLDPDKLDQVLA 234

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           NL   A     RG                ++   G+      +                 
Sbjct: 235 NLVDNAIRH-GRGTVTVHVAPAPGEGVDITVTDQGDGVPPEVRPLIFRRFWRAGRYGGTG 293

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  Y V  L   +   +  +       +      
Sbjct: 294 LGLYIVKGLVEAHGGTVSVDDAPGGGALFRVRFP 327


>gi|150392094|ref|YP_001322143.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149951956|gb|ABR50484.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 627

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 78/244 (31%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------- 48
           M + +   +  ++    L     S + H++ +P+  I  S +L++++   +         
Sbjct: 343 MTEELNQRIKEIEEYNELKDQFLSTVSHELKTPLNIILGSNQLMEQLDHNNMESWNVNIK 402

Query: 49  -VMQLIRLSSMSAIIRLKFMRL----AFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDK 98
             +++ + +    +  +  +         +  +      +    +     ++      + 
Sbjct: 403 KYLKMQKQNCYRLLRLINNLIDVTKAENHHLRAHPINRDITKTVEDITMSIVGYADLKNI 462

Query: 99  RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            V      E+  +S +     +I+LN+   A      GG++ +++ D K     S+K NG
Sbjct: 463 NVVFDTEVEEKIMSFDEDLIERIMLNILSNAIKFTGEGGEIQVTIYDRKEIIAISIKDNG 522

Query: 156 NLARFPE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +    F +    +       +   I    V  L   +  ++             
Sbjct: 523 IGIPEDKTEIIFDRFAQVDSTLSREFEGSGIGLALVKYLVELHDGKISVVSKFGEGSEFI 582

Query: 211 ALLE 214
             L 
Sbjct: 583 IELP 586


>gi|330986412|gb|EGH84515.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 697

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +A+       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R       +VD    +  +E++I   +     ++V  +   
Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKAVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 427

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      +    +
Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546

Query: 210 SALLEK 215
              L +
Sbjct: 547 CLYLPR 552


>gi|312143225|ref|YP_003994671.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311903876|gb|ADQ14317.1| PAS/PAC sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 525

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 72/239 (30%), Gaps = 27/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQL 52
           K     L    L     + I H++ +P+  I +SL+LL+          +    +  ++ 
Sbjct: 254 KKQNEELEYSKLRTQFFANISHELKTPLNLIFSSLQLLEFYLYNSQTYKDKDKINNYLKS 313

Query: 53  IRLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I+ +    +  +  +               G    V  +  + +      +    D +  
Sbjct: 314 IKNNGFRLLRLVNNLIDITRIEVDAFSLHRGNFDIVKLIREIVNTVSDYLEEKERDFKFI 373

Query: 102 VSWTGEKI-DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                  I        +++LNL   A     RG ++ +++Q        S+K  G     
Sbjct: 374 CDLDSAVIACDPFNIERVILNLISNAVKFSARGDQIILTLQKVDEAISLSVKDTGIGIEK 433

Query: 161 P-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + VD + +   +   I    V  +   +  ++  E    +       L 
Sbjct: 434 ENQAIIFDKFRQVDQSFKKKREGSGIGLSLVKSIIEMHGGKIELESDYGYYSNFKVFLP 492


>gi|302336522|ref|YP_003801729.1| integral membrane sensor signal transduction histidine kinase
           [Olsenella uli DSM 7084]
 gi|301320362|gb|ADK68849.1| integral membrane sensor signal transduction histidine kinase
           [Olsenella uli DSM 7084]
          Length = 532

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 60/220 (27%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-- 73
           L S + H++ +P+ A+  ++E + +     +DE ++ +          +  M        
Sbjct: 288 LTSDVAHELRTPLMAMLATVEAMQDGVLPTDDEHLETVAEEVRRLSRLVDAMLHLSRIEN 347

Query: 74  ------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                          V SL+ + +     +                    +    + + N
Sbjct: 348 GTRQLKVKSDDLVYLVKSLVSMQERMFADKGLRLRFDDKTAEGECFVDMDADLIREAITN 407

Query: 122 LFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVEST- 175
           +   A    P      V++     + E   S++  G      +      +    +     
Sbjct: 408 IMSNAMRYTPEGGWVVVSVERDRPRGEARVSVQDTGIGIAREDIPRVFSRFWRSDASRER 467

Query: 176 -IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +  ++K  +  E   D     +  + 
Sbjct: 468 VSGGLGVGLALTKEIVDKHKGTISVESELDKGTTFTIHVP 507


>gi|289435295|ref|YP_003465167.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289171539|emb|CBH28085.1| sensor histidine kinase ResE [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 596

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 356 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 411

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M           ++          L  +     V+     V+  +++  
Sbjct: 412 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLEKVMANFDVLAKENFVELGLELET 471

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +     +R  ++L+NL M A     + G         ++ ++ N+ I ++  NG+  
Sbjct: 472 PNLEYSYDPDRMEQVLINLIMNAIRHTGKEGYQGKVVLKQTIDETNNKLIITVSDNGSGI 531

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  +            
Sbjct: 532 AEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHGGKISVKSELGKGSDFIIT 591

Query: 213 LE 214
           L 
Sbjct: 592 LP 593


>gi|260462410|ref|ZP_05810618.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259031904|gb|EEW33172.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 602

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 66/220 (30%), Gaps = 26/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAII-----RLKFM 67
           + + H++ +P+ AI    ++L            + E + L+R S    +           
Sbjct: 350 AVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSILDVSR 409

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------AKILL 120
             +  Y    +    +  +E          +   +    +    + +         +IL+
Sbjct: 410 IESGAYATEPEPFRFMEAVEMCQSMMRLQAQAKNIDLQTQIAPDAGDINADRRAVQQILI 469

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P GG V +  +   +   F ++  G      E F  +    +        
Sbjct: 470 NLVSNAVKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGI-AEEDFANLGKPFMQIQNDYTR 528

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    V  L   ++  +  E +      ++  L 
Sbjct: 529 RFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 568


>gi|157148988|ref|YP_001456307.1| osmolarity sensor protein [Citrobacter koseri ATCC BAA-895]
 gi|157086193|gb|ABV15871.1| hypothetical protein CKO_04826 [Citrobacter koseri ATCC BAA-895]
          Length = 450

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 61/205 (29%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +           + +         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIDTALQPGSIQVKMHPLSIKRAIANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     +   F ++ +G      +    F   V G+   +     +    V  +
Sbjct: 353 NGWIKVSSGTEPHRAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLEIGSSERGGLSIRAWLP 437


>gi|153870226|ref|ZP_01999670.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152073308|gb|EDN70330.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 623

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 62/245 (25%), Gaps = 35/245 (14%)

Query: 2   AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           AKN      +  L        +   + + H++ +P+ AI    E+L E   E    + I 
Sbjct: 111 AKNQAE--HAQRLAEEANVTKSQFLANMSHELRTPLNAILGYSEILQEEAEELGQSECIS 168

Query: 55  LSSMSAIIRLKFMR--------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                       +                      + D  I + ++   I+  +     +
Sbjct: 169 DLQRIYSAGKHLLELINDVLDISKIEAGKMDLSLETFDLAIVIKEVISNIQPQVEKKANI 228

Query: 101 ----QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKING 155
                    G  +    +  ++LLNL   A     +G        +  +    F +  NG
Sbjct: 229 LEVKIADPLGTMLSDLTKLRQMLLNLLSNAAKFTEQGTISIEVKREQEETWFCFMVTDNG 288

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 E+  ++                   +        A      +L           
Sbjct: 289 IGM-TEEQQKKVFQPFTQADASTTRRFGGTGLGLAITKQFAEMMGGYILVNSEFGKGSTF 347

Query: 210 SALLE 214
             LL 
Sbjct: 348 KLLLP 352


>gi|153872867|ref|ZP_02001635.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070667|gb|EDN68365.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 379

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 69/237 (29%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSS--MDLVALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVMQ 51
            +     L    M+L A     + HD+ +P+  +    E L E           + + + 
Sbjct: 142 RQEYAIKLEQRNMELNAF-ARTVAHDLKNPLTGVMGLSEQLSEKCSTNRFHCKTDSKYLG 200

Query: 52  LIRLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           LI  S    +          +        T  +D    +  + +    ++  D +  +S 
Sbjct: 201 LITESGQKMLDIVNALLLLARTAGTHEVKTQPLDMSTIINQVVETRLAWMIRDFQAHISL 260

Query: 105 TGEKID---LSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARF 160
                     +    ++  N          +   +   +   + N   F ++ NG     
Sbjct: 261 PKSWPIALGYAPWVEEVWANYLSNGLKYGGQPPSLELGAEPQNNNMTRFWIRDNGPGL-S 319

Query: 161 PEKFTQIVDGN---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E  TQ+        +   D H +    V  +  +   ++  E I+    +    L 
Sbjct: 320 REAQTQLFTPFTRLHKERADGHGLGLSIVQQIVEKQGGQIGLESIEGQGSLFYFTLP 376


>gi|94267578|ref|ZP_01290927.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93451936|gb|EAT02655.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 704

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS----- 56
            K+  F  S+ +L       + HD+  P+  I++ + LL+    +    +   +      
Sbjct: 467 EKSAEFQRSNAELE-QFAYVVSHDLRQPLRMINSYMGLLERDLNDKLTDETREMMGFAVG 525

Query: 57  --SMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  + +  +  +                     I  +  D    +  V++S    +
Sbjct: 526 GARRMDQMLVSLLEYSRVGRKGEPMAPLASRQPVDEAIRFLEPDIAEANATVRISGQWPE 585

Query: 109 IDLSRE-RAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT 165
           I  SR+   ++  NL   A           + +          F++  NG      + F 
Sbjct: 586 IVASRDEFTRLWQNLIGNALKYRDPDRPPDVDIAVTPEDGGWRFTVADNGIGIDPQQ-FD 644

Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
           ++             +   I       +   +  R+  E             L K
Sbjct: 645 RLFKVFQRLHARDKYEGTGIGLAVARKIVERHGGRIWVESQGAGQGCRFIFTLPK 699


>gi|309782478|ref|ZP_07677202.1| phosphate regulon sensor kinase PhoR [Ralstonia sp. 5_7_47FAA]
 gi|308918815|gb|EFP64488.1| phosphate regulon sensor kinase PhoR [Ralstonia sp. 5_7_47FAA]
          Length = 442

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 53/217 (24%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM------ 67
             + + H++ +P+  +   LE + +       +   + ++   +M     ++ +      
Sbjct: 210 FVANVSHELKTPLTVLSGFLETVRDIPLPEEDKRRYLDMMHTQAMRMQHLVEDLLALATL 269

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        +  ++     +            +             E      NL 
Sbjct: 270 EGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRHTVSMTCDPAVSVCGAELELLSAFSNLA 329

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG + +         ++S+   G     PE   ++ +              
Sbjct: 330 SNAVRYTPDGGSIRLDWGVRDGHAVYSVTDTGIGI-APEHIPRLTERFYRVDRSRSRDTG 388

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +   L             A+  
Sbjct: 389 GTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425


>gi|294055873|ref|YP_003549531.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
 gi|293615206|gb|ADE55361.1| histidine kinase [Coraliomargarita akajimensis DSM 45221]
          Length = 586

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A +    L  + +  +  + + H+I +P+  +   ++LL +  ++ E  QL+  +  SA
Sbjct: 170 LAYSRDKALEGVRMKDIFLANMSHEIRTPMNGVLGMIDLLYDTEMDAEQEQLVGTARSSA 229

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWT 105
              ++ +     ++              + +  +     +  +     +           
Sbjct: 230 ETLMRIINDILDFSKIEAGKVSVELMPFNLIEIVESSAALYSEAATEKEIDLAVAFDDVP 289

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARFPE 162
              +       ++L NL   A      G     + Q         +  +K  G      +
Sbjct: 290 AWVVGDPHRYQQVLNNLISNAVKFTDSGEVEIRACQVETGSGLGILTEVKDTGIGIPASK 349

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +                 +       L       +  +   D   V S +L 
Sbjct: 350 VT-KLFEPFTQAEESHARRFGGTGLGLSICRNLCELLGGEIECDSQLDDGTVFSFVLP 406


>gi|260889616|ref|ZP_05900879.1| sensor histidine kinase [Leptotrichia hofstadii F0254]
 gi|260861027|gb|EEX75527.1| sensor histidine kinase [Leptotrichia hofstadii F0254]
          Length = 472

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 67/242 (27%), Gaps = 31/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIED--EVMQL 52
           M   +          A   S + H++ +P+ AI    E       L+E   +    +++ 
Sbjct: 230 MFNRLQEAFDRE---AQFTSDVAHELRTPLSAIRMQSEYSLKYLNLNEESEDILKNILEK 286

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSW--T 105
            +  S      L   R+             L +I Q+            + ++       
Sbjct: 287 SKKMSTLISQLLMLARMDKKNQKLNIENENLNEIIQLVIEVENNYAKEKNIKIIYDEKND 346

Query: 106 GEKIDLSRERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKING 155
                      ++ +NL   A             L +    + +     ++    +  +G
Sbjct: 347 IFADVDKDMLTRVFINLISNAITYGNENGTIKITLDKIENESENTDLQNSKIQCKIIDDG 406

Query: 156 NLARFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                      + +    +   + D+  +    V  +  E+K  ++ E       + +  
Sbjct: 407 IGISSEHINKIWNRFYQIDSSRSSDNSGLGLSIVKWIIEEHKGTIMVESELGKGTIFTFY 466

Query: 213 LE 214
           L 
Sbjct: 467 LP 468


>gi|258626849|ref|ZP_05721656.1| sensor histidine kinase [Vibrio mimicus VM603]
 gi|258580896|gb|EEW05838.1| sensor histidine kinase [Vibrio mimicus VM603]
          Length = 733

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 57/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTAKQRQHLTSLYESG 399

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
              +  +     Y+                   +G I+ +                ++  
Sbjct: 400 EHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHSEIID 459

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
           T           +I+ NL   A     +G             +      ++ +G      
Sbjct: 460 TRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIGDEYFLTIKVQDSGIGI-PQ 518

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +   +I                   +    V  +A      +  +            
Sbjct: 519 DALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGTVSVQSEVGQGTCFEVR 575


>gi|257886295|ref|ZP_05665948.1| histidine kinase [Enterococcus faecium 1,231,501]
 gi|257822151|gb|EEV49281.1| histidine kinase [Enterococcus faecium 1,231,501]
          Length = 346

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           + K+    +  ++    L     S + H+  +P+  I   ++LL      +   +  + +
Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 170

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVS 103
           +I   +  + +    ++L       +                I  +   +      + + 
Sbjct: 171 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 230

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                   + E   ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQVNGQIHIKLFETATEIVLEVTDSGVGMNEET 290

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAIIRLSK 346


>gi|218441909|ref|YP_002380238.1| histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174637|gb|ACK73370.1| histidine kinase [Cyanothece sp. PCC 7424]
          Length = 427

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 61/228 (26%), Gaps = 26/228 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----LSSMSAIIRL 64
             +       +   H++ +P+ AI  S+E++           + +      ++       
Sbjct: 198 QQLK---QFTADASHELRNPLTAIQTSIEVMLNHPERVHPKDMKKLVAVASATEQMSRLT 254

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------------VDKRVQVSWTGEKIDL 111
           + +         V ++        V E                 +  + QV      +  
Sbjct: 255 QDLLFLARTKTPVSTVENAWKPTSVNEILQNLVDLLEPLAEDKEITLKYQVLANVAVMGE 314

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIV 168
             + +++  NL   A       GKV++ +       + S++  G      +    F +  
Sbjct: 315 PAQLSRLFSNLLQNAIQYSLPQGKVSVCLAKQNRFCLVSVEDTGIGIAPEDIPFVFNRFW 374

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +     + +A  +  ++               L 
Sbjct: 375 RADKARSRREGGTGLGLSIAMAIAQHHGGKITVTSELGVGSCFKVYLP 422


>gi|154495258|ref|ZP_02034263.1| hypothetical protein PARMER_04314 [Parabacteroides merdae ATCC
           43184]
 gi|154085182|gb|EDN84227.1| hypothetical protein PARMER_04314 [Parabacteroides merdae ATCC
           43184]
          Length = 684

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 64/231 (27%), Gaps = 23/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +N     S  +L     + + HD+ +P+ A+    ELL          G  D ++    
Sbjct: 319 RRNRELLRSRKEL----MASVAHDLRAPLAAVKGCAELLPSESDVSRRTGYLDNILHSSD 374

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI---GLGDIEQVIEDFIAVDKRVQVS-----WTG 106
                    +++ R+  G   S D+L     L +         A  K +  +        
Sbjct: 375 YMLGLVNTLMEYHRMDEGGVRSNDTLFSLKVLFEEIADGHRLAARQKNLMFTVSFSGLDT 434

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     +I  NL   A    P G     +          S++  G      E    
Sbjct: 435 IVCCDGSHIRQIADNLLSNALKFTPHGEVRLEAEYLYGE-LCISVRDTGVGISAEEKERI 493

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F      +    I    +       L  E + R+  + +       S  L 
Sbjct: 494 FGAFERLDNARGIPGFGLGLAITARLVSEMRGRVEVKSVPGEGSRFSVFLP 544


>gi|83646921|ref|YP_435356.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634964|gb|ABC30931.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 433

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 24/220 (10%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSSMSAIIRLK---------- 65
            + + H++ +P+ AI  SL LL     +        +++++  + +  +K          
Sbjct: 208 VAVVSHELRTPLTAIQGSLGLLQSGRFDHNPDQKAHMLQMACNNTVRLVKLVNEVLDIER 267

Query: 66  ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                + L        + +    D          V  R Q               ++L N
Sbjct: 268 IESGRLTLELTSLNPRELIQEAVDTIAPAASLKNVSLRYQPQDATPIKADHDRLLQVLQN 327

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A    P GG + + ++D   +    +   G      +   ++             +
Sbjct: 328 LLSNALKFSPSGGVIEVKLKDKPEQLNIDVIDQGPGI-PQQLTKRLFTRFAQATTAANRS 386

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +  Y    +  +++ R+  E   +        L +
Sbjct: 387 TGGSGLGLYISKAIIEQHQGRIGFENQPEGGCRFFVELPR 426


>gi|56750891|ref|YP_171592.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81299455|ref|YP_399663.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
 gi|8953946|gb|AAF82192.1|AF258464_1 circadian input kinase [Synechococcus elongatus PCC 7942]
 gi|56685850|dbj|BAD79072.1| two-component sensor kinase [Synechococcus elongatus PCC 6301]
 gi|81168336|gb|ABB56676.1| GAF sensor hybrid histidine kinase [Synechococcus elongatus PCC
           7942]
          Length = 754

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 50/220 (22%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRL------- 69
           + + H++ +P+  +      L       + +   + I+    S    L+ +         
Sbjct: 389 ATMSHELRTPLTCVIGMSSTLLRWAFGPLTERQREYIKAIHDSGEHLLELINDILDLSQI 448

Query: 70  -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                                 +  Q       +   + +           +  ++   L
Sbjct: 449 EAGKAALQVRPFSLSRLATQTLNTLQEKARLGEIQLMLDLQLNNRVDVFRADPKRLRQIL 508

Query: 123 FM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174
                 A       G V + V    +  IF +   G      E+          D ++  
Sbjct: 509 INLLSNAVKFTEPQGTVFLRVWREGDRAIFQVSDTGIGIPESEQAQLFQKFQQLDTSIRR 568

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       L   +   +  E         +  + 
Sbjct: 569 QYGGTGLGLALTKQLVELHGGHIQIESTVGQGSTFTVWIP 608


>gi|119716239|ref|YP_923204.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536900|gb|ABL81517.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 508

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLC-------SRICHDIISPIGAIHNSLELLD--EVGIEDEVMQ 51
           + + +   L  ++  A +        +   H++ +P+  +   LELLD  +     E  +
Sbjct: 265 LTRTVNGMLDRLE-AAFVGQREFLDDAG--HELRTPLTVLRGHLELLDTGDPAEVAETKE 321

Query: 52  LIRLSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           L+          +  +       R  F     VD      D+          D ++  + 
Sbjct: 322 LLLDEVDRMSRLVGDLILLAKSDRPDFLQLRPVDLAGLTADVLAKARGLGDRDWQLDAAA 381

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
               +   +   + LL L   A      G  V I            ++  G      +  
Sbjct: 382 DVVVVGDEQRLTQALLQLADNAVKHTGPGDTVAIGSSYDDGRARLWVRDTGPGVPPEQRG 441

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD---HNVVLSALLE 214
             F +   G V    +   +    V  +A  +   +  E  ++           L 
Sbjct: 442 LIFERFGRGAVMPGDEGFGLGLSIVSAIARSHGGGVEVEDAEETAPRGARFVMTLP 497


>gi|22125162|ref|NP_668585.1| sensor protein KdpD [Yersinia pestis KIM 10]
 gi|45442275|ref|NP_993814.1| sensor protein KdpD [Yersinia pestis biovar Microtus str. 91001]
 gi|51597235|ref|YP_071426.1| sensor protein KdpD [Yersinia pseudotuberculosis IP 32953]
 gi|108808413|ref|YP_652329.1| sensor protein KdpD [Yersinia pestis Antiqua]
 gi|108811339|ref|YP_647106.1| sensor protein KdpD [Yersinia pestis Nepal516]
 gi|149365418|ref|ZP_01887453.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis CA88-4125]
 gi|162419854|ref|YP_001607904.1| sensor protein KdpD [Yersinia pestis Angola]
 gi|165925390|ref|ZP_02221222.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937048|ref|ZP_02225613.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008476|ref|ZP_02229374.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166212512|ref|ZP_02238547.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398925|ref|ZP_02304449.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167421451|ref|ZP_02313204.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167423813|ref|ZP_02315566.1| sensor protein KdpD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167469458|ref|ZP_02334162.1| sensor protein KdpD [Yersinia pestis FV-1]
 gi|218929762|ref|YP_002347637.1| sensor protein KdpD [Yersinia pestis CO92]
 gi|229838248|ref|ZP_04458407.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229895557|ref|ZP_04510728.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis Pestoides A]
 gi|229898813|ref|ZP_04513958.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis biovar Orientalis str. India 195]
 gi|229901587|ref|ZP_04516709.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis Nepal516]
 gi|294504481|ref|YP_003568543.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis Z176003]
 gi|21958024|gb|AAM84836.1|AE013729_4 sensor for high-affinity potassium transport system [Yersinia
           pestis KIM 10]
 gi|45437139|gb|AAS62691.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis biovar Microtus str. 91001]
 gi|51590517|emb|CAH22157.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774987|gb|ABG17506.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis Nepal516]
 gi|108780326|gb|ABG14384.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis Antiqua]
 gi|115348373|emb|CAL21308.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis CO92]
 gi|149291831|gb|EDM41905.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis CA88-4125]
 gi|162352669|gb|ABX86617.1| sensor protein KdpD [Yersinia pestis Angola]
 gi|165914911|gb|EDR33523.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922997|gb|EDR40148.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992858|gb|EDR45159.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206443|gb|EDR50923.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166960940|gb|EDR56961.1| sensor protein KdpD [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051429|gb|EDR62837.1| sensor protein KdpD [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057983|gb|EDR67729.1| sensor protein KdpD [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229681516|gb|EEO77610.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis Nepal516]
 gi|229688361|gb|EEO80432.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694614|gb|EEO84661.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229701363|gb|EEO89391.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Yersinia pestis Pestoides A]
 gi|262362527|gb|ACY59248.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis D106004]
 gi|294354940|gb|ADE65281.1| two-component regulatory protein sensor kinase KdpD [Yersinia
           pestis Z176003]
          Length = 908

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALYMLETTLSQHQIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I  +         +  NG      +
Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVQGEWLNVDVWDNGPGVTIGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883


>gi|229189481|ref|ZP_04316498.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876]
 gi|228594072|gb|EEK51874.1| hypothetical protein bcere0002_11610 [Bacillus cereus ATCC 10876]
          Length = 466

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   E   D    +   L
Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|224371000|ref|YP_002605164.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
 gi|223693717|gb|ACN17000.1| two-component sensory box histidine kinase/response regulator
           [Desulfobacterium autotrophicum HRM2]
          Length = 825

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 64/244 (26%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
            + +   L     M+ V  L   + HD  + +  I  + E++ E       +        
Sbjct: 439 QEKLQLQLNQAQKMESVGRLAGGVAHDFNNMLSIILGNAEIIMEDMDPSNPIVTNLEEIY 498

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +    SS      L F R        ++    L D+ +++   I  D  +  +       
Sbjct: 499 KAAERSSSLTRQLLAFARKQTIAPKILNLNHVLADMLKMLMRLIGEDIDLTWNPAPNLWS 558

Query: 111 LSRERAKILLNLFMVAHASLPRGG------------------KVTISVQDSKNENIFSLK 152
           +  + ++I   L  +   +                              +  +  + ++ 
Sbjct: 559 VKIDPSQIDQILANLCVNARDSIKSVGKVTIETGNISFDEAYCKEHQGFNPGSYVMMAVS 618

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG+         ++ +    +        +    V  +  +N   +             
Sbjct: 619 DNGSGMDKK-ILDKLFEPFFTTKSIGQGTGLGLATVYGIVKQNHGFINVYSEPGEGTTFK 677

Query: 211 ALLE 214
             L 
Sbjct: 678 IYLP 681


>gi|218778320|ref|YP_002429638.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218759704|gb|ACL02170.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 452

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 67/245 (27%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            +++   L  S  + A+  L   I HD  + + AI    EL    L E       +Q + 
Sbjct: 65  RRDLETQLERSRKMEAIGTLAGGIAHDFNNILAAIIGYSELAAFDLPEDHPSHAHIQEVL 124

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +S  A   +K +      +    SLI L +I   +   I       +    +    +  
Sbjct: 125 KASERAKRIIKQILAFSRRSEPEQSLIRLEEILDEVLTLIRASFPSSIEIRKKIFCENDR 184

Query: 115 R-------AKILLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSL 151
                    ++ +NL   A  ++                      T            S+
Sbjct: 185 IMGDSTQLHQVFMNLLTNARHAVSEETGVVEVAVESVDVTDHAWATKHSIIPGPFLKISI 244

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             NG+         +I D    +        +    V  +   +   +  +         
Sbjct: 245 TDNGHGMDEVTL-QRIFDPYFTTKEKGKGTGMGLAVVEGVVTSHFGTITVDSKPGRGATF 303

Query: 210 SALLE 214
           +  L 
Sbjct: 304 AIWLP 308


>gi|254467028|ref|ZP_05080439.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
 gi|206687936|gb|EDZ48418.1| response regulator, sensor histidine kinase component GacS
           [Rhodobacterales bacterium Y4I]
          Length = 793

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 51/243 (20%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K I   L      A           + + H+I +PI  +    E+L+E  +  E     
Sbjct: 250 KKRIAERLQQEKARAEAATETKSRFLATMSHEIRTPINGVLGMAEVLNETRLTPEQTSCT 309

Query: 54  RLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQ 101
                S+   L+ +                     +    + D+  ++     A    + 
Sbjct: 310 STILASSEALLRIVNDILDFSKLEAGKAQMLQQPFNLRDVIYDVATLMSPSATAKGVEIC 369

Query: 102 VSWTGEKIDLSR----ERAKILLNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKING 155
           +                  +IL+NL   A                          ++  G
Sbjct: 370 IDIPEHTPPEFIGDSGRVRQILMNLVGNAVKFTLEGHISITLNYDARHNIPLCIDVRDTG 429

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                                     +   +       L      R+            +
Sbjct: 430 VGIPEDSIGQIFHAFEQVESTTARRFEGTGLGLAISSRLTQAMGGRIDVVSQAGKGSCFT 489

Query: 211 ALL 213
             L
Sbjct: 490 VCL 492


>gi|153870999|ref|ZP_02000277.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152072537|gb|EDN69725.1| Signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 673

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 59/226 (26%), Gaps = 28/226 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIRLKF--- 66
           +   + + H++ +P+ AI    E+L E   +         ++ I  +    +  +     
Sbjct: 182 SQFLANMSHELRTPLNAIIGYSEILREDAEDLEQEDFIPDLKKIDTAGRHLLGLINDVLD 241

Query: 67  -----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRERAK 117
                          V+  + +  +   ++  I     +          +      +  +
Sbjct: 242 LSKIESGKMDLLIEPVNLDMLIDKVLGTVQPLIEKKANLLKIERPTVLGKIQTDMTKLCQ 301

Query: 118 ILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
           ILLNL   A     +     ++   +    ++ IF +  NG      +   ++       
Sbjct: 302 ILLNLLSNAAKFTEQGIIEFQIYHQINTEGDKVIFCVTDNGIGMTEKQ-QEKLFHPFTQA 360

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +        A      +            +  L 
Sbjct: 361 DSSTTRRYGGTGLGLTITKDFAEMMGGHIKVASDFGFGSTFTLSLP 406


>gi|154484837|ref|ZP_02027285.1| hypothetical protein EUBVEN_02555 [Eubacterium ventriosum ATCC
           27560]
 gi|149733790|gb|EDM49909.1| hypothetical protein EUBVEN_02555 [Eubacterium ventriosum ATCC
           27560]
          Length = 347

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKELGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQADGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVVELP 340


>gi|119387487|ref|YP_918521.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119378062|gb|ABL72825.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 560

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE-----DEV 49
           +A+     + +  L  L  + + + H++ +P+  I    E    +L E   +      ++
Sbjct: 328 LAQLQGEMVQANKLATLGQITAGVAHEVNTPLATIRLLAENSRHMLPEDAPDLDRNLAQI 387

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWT 105
           +++    +        F R A G  G V     L     +               Q+   
Sbjct: 388 LRMTDRIAQITTELRGFARKATGELGPVPLKDALDAALLLTASRRRAQDIRLTLPQIPPG 447

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKF 164
              +  +    +IL+NL   A  +L       I +          S+  NG         
Sbjct: 448 LRVMAETVRLEQILVNLIQNAQEALEGRPDPEIRITLRDGPVLRLSISDNGPGLSPR-IA 506

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSALLEK 215
             +      S  +   +       +A +    L  E             L K
Sbjct: 507 ANLFTPFATSKPEGLGLGLVISQEIARDFGGSLTAEPSRAGEGATFHLDLPK 558


>gi|332528170|ref|ZP_08404201.1| Signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
 gi|332112741|gb|EGJ12534.1| Signal transduction histidine kinase [Rubrivivax benzoatilyticus
           JA2]
          Length = 585

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--------------LLDEVGIE 46
           + +      S + ++  + S I H++  P+ AI N  E               L +    
Sbjct: 346 LHREQRDQFSRLGILGEMASNIAHELNQPLAAITNYAEGMTRYIDAGRSDTAFLRDGARG 405

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
                      +  I      R A      +D ++G                 V      
Sbjct: 406 IAGQAERAAVIIRRIRGFVRRRDARREPLDLDVVVGETLPLFAHAAARRAIPLVWRPHGA 465

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
                    E  ++LLNL   A  + P        + ++    +     +++ +G+    
Sbjct: 466 LPAVNADRIEIEQVLLNLLQNALDATPDGVAHERGIVVTTAQGEAGVELTVRDHGSGL-P 524

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   ++ D    +      +       +   +  RL      D    +  +L 
Sbjct: 525 PEVQARLFDPFFTTKPQGLGLGLSICRTIVESHGGRLTASAEADGGATMRVVLP 578


>gi|319788477|ref|YP_004147952.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466989|gb|ADV28721.1| multi-sensor hybrid histidine kinase [Pseudoxanthomonas suwonensis
           11-1]
          Length = 1046

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 61/243 (25%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDE-------VGIEDE 48
           A       S  +L A         + + H++ +P+ +      LL E             
Sbjct: 348 AARDDLLRSRAELAAASRYKSEFLANMSHELRTPLNSALILARLLAENREGTLNEEQVKY 407

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------V 96
              +   ++    +    + L+    G V+ +       Q++E                +
Sbjct: 408 ARAIHSANNDLLALINDILDLSRIEAGHVELVDETLHTPQLVERLRETFEPLAQQKGLEL 467

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
              +      + +   +   ++L NL   A      G          +    F++   G 
Sbjct: 468 RMEIAPGAPAQFLADGQRLQQVLKNLLANAVKFTEHGSVALCIEGHGEGRIRFAVSDTGI 527

Query: 157 LARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                      +  +  DG+         +       LA      L  E         + 
Sbjct: 528 GIAREQTEVIFEAFRQADGSTSRRFGGTGLGLAISRDLAERMGGSLTVESEPGRGSCFTL 587

Query: 212 LLE 214
            L 
Sbjct: 588 ELP 590


>gi|301061871|ref|ZP_07202601.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300443975|gb|EFK08010.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 622

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 67/244 (27%), Gaps = 32/244 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRL 55
           M K+    + +  + +L  + + I H++  P+ AI      L L+ E G      +L ++
Sbjct: 377 MEKDAQL-VQASKMKSLGEMSAGIAHELNQPLNAIKMGNDFLILMLEKGRVIPPEKLAQV 435

Query: 56  SSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +                   F R A      V     + ++ ++    + +         
Sbjct: 436 AKEVSAQVSRAXGIIRRLRDFARKADFSKEEVSINDPIMNVVKIFGQQLKLQGMDLRFLP 495

Query: 106 GEKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS---------LK 152
           G+ I           ++  NL   A  ++ +  +       ++               + 
Sbjct: 496 GKNIPTVLGSPNRLEQVFFNLLSNARDAILQNREALNINAGNQITVRSFSLNSRAVISVS 555

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      +   +I +    +        +    V  +  E+   +             
Sbjct: 556 DTGVGV-SSDARDKIFEPFFTTKEVGKGMGLGLAIVYEIVVEHGGEVRVHSDVGIGTTFV 614

Query: 211 ALLE 214
             L 
Sbjct: 615 VALP 618


>gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis
            NIES-39]
          Length = 1778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 66/245 (26%), Gaps = 32/245 (13%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
            + +     + +  L     + + H++ +P+ AI    E + E         + + +Q I 
Sbjct: 1384 LRQTNQELMRATRLKDEFLANMSHELRTPLNAILGMTEGMQEEVFGTLGDRQKQALQTIE 1443

Query: 55   LSSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWT 105
             S+   +  +     +         +D                + +        + V   
Sbjct: 1444 RSASHLLELINDILDLAKIEAGEMKLDLNYTSIRPLCQSSIAFIKQQAFKKGISINVQIP 1503

Query: 106  GEKIDLSRERA---KILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKING 155
                DL  +     ++L+NL   A    P  GK           +   K+   F++   G
Sbjct: 1504 QALPDLYIDERRLRQVLINLLNNAVKFTPSRGKISLEVKLQPPPIDSDKSRVRFAVIDTG 1563

Query: 156  NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                  E+ +++               +   +    V  +   +   +            
Sbjct: 1564 IGIN-EEQLSKLFKPFTQIDSALNRQYEGTGLGLSLVKRIVEMHGGTVNVISKVGSGSQF 1622

Query: 210  SALLE 214
               + 
Sbjct: 1623 IFEIP 1627


>gi|291278618|ref|YP_003495453.1| hypothetical protein DEFDS_0186 [Deferribacter desulfuricans SSM1]
 gi|290753320|dbj|BAI79697.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 912

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 62/230 (26%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSA 60
            +      + ++ + LL   I HD  + + +I N + L+        +V+  I       
Sbjct: 539 REMEELRKNKLESIGLLAGGIAHDFNNILASIKNYISLVKLSGADSIDVIYKIDEIVDQG 598

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRER 115
                 +          + +I L D+    ++       + +                + 
Sbjct: 599 KNISNKLFTLSSGDIIKNDIINLKDVINTAKELSLAGSNITLDINSKINDVYIKGDETQI 658

Query: 116 AKILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            ++  NLF+ A  ++                  +      +  +  +K NG         
Sbjct: 659 FQVFQNLFINAKEAMKNKGKITLSIETKYISKNLMGLTKGDYALIRVKDNGPGIEEG-II 717

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D    +      +  +    +   +   +  + I          L 
Sbjct: 718 DKIFDPYFSTKERGSGLGLFITYNIIKNHNGHISIKSIKGEGTEFIIYLP 767


>gi|284166092|ref|YP_003404371.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
 gi|284015747|gb|ADB61698.1| multi-sensor signal transduction histidine kinase [Haloterrigena
            turkmenica DSM 5511]
          Length = 1064

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/254 (8%), Positives = 60/254 (23%), Gaps = 44/254 (17%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
             + +  +   ++  A     + HD+  P+  I + L+LL+       +    + +   + 
Sbjct: 808  RRKLEASNERLEQFAY---AVSHDLQEPLRMITSYLQLLESRYADELDEDAAEFIEFAVD 864

Query: 55   LSSMSAIIRLKFMRLAF-----GYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEK 108
             +     +    +  +           VD    + ++   +       +  + +      
Sbjct: 865  GAERMREMIEGLLEYSRVTTRGDPLEPVDLERVVDEVLADLQFRIEDENAEISIESLPRV 924

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------------------------- 143
                 +  ++  NL   A               +                          
Sbjct: 925  EGDIDQLRQVFQNLVDNAIEYSGDEPPQIEITAERREVSRAAADGPADPNPRADGIAAES 984

Query: 144  KNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE 200
             +E + S+   G      +    F      +     +   I       +   +   +  E
Sbjct: 985  DDEWVISVADEGIGIDPEDTDRIFEVFERLHTREEHEGTGIGLALCQRIVERHGGEIWVE 1044

Query: 201  IIDDHNVVLSALLE 214
                     S  L 
Sbjct: 1045 SEPGEGATFSFTLP 1058


>gi|257484781|ref|ZP_05638822.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331011167|gb|EGH91223.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 697

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +A+       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 308 LAQAEDALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRMSQGRFTEIDRYIGA 367

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R       +VD    +  +E++I   +     ++V  +   
Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKAVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 427

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 428 WSTFIDGPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLTPGQYLSLCV 487

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      +    +
Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPEQGTTM 546

Query: 210 SALLEK 215
              L +
Sbjct: 547 CLYLPR 552


>gi|322421028|ref|YP_004200251.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127415|gb|ADW14975.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 852

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 66/243 (27%), Gaps = 30/243 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
            KN+   L  S  L A+  L   + HD  + +  I     LL+          E+++ I 
Sbjct: 469 RKNLEGQLRHSQKLEAVGHLAGGVAHDFNNILTVIGGYGALLEMKMTADDPGREMVEQIL 528

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107
            ++  A    + +           +   L +I Q +  F+       +++          
Sbjct: 529 AATDRAANLTRSLLAFSRKHEMHPAHCSLNEIIQSVAKFLKRIIGEDIAFEMHLAPLPLT 588

Query: 108 KIDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLK 152
                 +  ++++NL   A  ++                             +  + S+ 
Sbjct: 589 VYADKGQMEQVIINLATNARDAMKNGGVFSIRTETVAMDYRFLEAHGFGTPGDYALISVS 648

Query: 153 INGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            NG       +            +     +    V  +  ++K  +  E           
Sbjct: 649 DNGQGMDEATRSMIFEPFFTTKDVGKGTGLGLSIVYGIVQQHKGFIEVESEAGGGTSFRI 708

Query: 212 LLE 214
            L 
Sbjct: 709 YLP 711


>gi|238788972|ref|ZP_04632762.1| Osmolarity sensor protein envZ [Yersinia frederiksenii ATCC 33641]
 gi|238722999|gb|EEQ14649.1| Osmolarity sensor protein envZ [Yersinia frederiksenii ATCC 33641]
          Length = 434

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 198 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 257

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +  V +                
Sbjct: 258 CNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVIAAESGYERVIETDLCEGEVMVDIHPLS 317

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  +    F   V G+
Sbjct: 318 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 375

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A + 
Sbjct: 376 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 418


>gi|209522699|ref|ZP_03271257.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209496748|gb|EDZ97045.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 959

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 60/241 (24%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           K     L  M +L     +   H++ +P+  +    E + +        ++ + + +I  
Sbjct: 578 KEKNDALKRMDELKDEFLANTSHELRTPLNGMIGLSESMLDGVAGPLTELQRQNLSMIAK 637

Query: 56  SSMSAIIRLKFMRLAFGYTG------------SVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           S       +  +                         + +   + +I +           
Sbjct: 638 SGHRLSTLVNDILDFSKLRHQTLELQLQPLGLREIVEVVVVLSKPLIGNKDIELINEIPD 697

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLAR 159
                        +IL NL   A      G             + +  + ++   G    
Sbjct: 698 DFPAVNADENRLQQILYNLIGNAIKFTDSGTVKITASVLDTDANNSMAVINISDTGIGI- 756

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PEK  +I +                 +       L   ++ ++  + +       S  L
Sbjct: 757 LPEKHHRIFESFEQGDGSTARQYGGTGLGLAITKQLVELHQGKIWLDSVVGSGSTFSFTL 816

Query: 214 E 214
            
Sbjct: 817 P 817


>gi|170702755|ref|ZP_02893612.1| histidine kinase [Burkholderia ambifaria IOP40-10]
 gi|170132326|gb|EDT00797.1| histidine kinase [Burkholderia ambifaria IOP40-10]
          Length = 371

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA------- 70
           + + + H++ +P+  I+  +E+L     +    Q I     SA    + +          
Sbjct: 1   MLATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSARSLTRMVGDILDASSLA 60

Query: 71  ----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNL 122
                     VD +    D     +   +    V      +        +    ++L NL
Sbjct: 61  TGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERLRQMLANL 120

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID----- 177
              A    P GG VT+++       +  +   G                           
Sbjct: 121 VSNALKFTPGGGAVTVTLSRDDAHAVLIVADTGQGIPPVFIPHVFDMFRRADGSPASPRR 180

Query: 178 SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              +    V  +A  +  ++  E    +     +  L 
Sbjct: 181 GLGLGLSIVRHIAELHGGQVQVESAGCNRGATFTVTLP 218


>gi|158425990|ref|YP_001527282.1| putative sensor protein [Azorhizobium caulinodans ORS 571]
 gi|158332879|dbj|BAF90364.1| putative sensor protein [Azorhizobium caulinodans ORS 571]
          Length = 816

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/225 (8%), Positives = 55/225 (24%), Gaps = 26/225 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H+I +P+  I   + L+ +  +E    + +R+   +A      +      + 
Sbjct: 234 SQFLAVMSHEIRTPMNGILGMVRLVLDGPLEAAQRERLRVVLRAAEALQVTLDDVLDLSE 293

Query: 76  SVDSLIGLGDIEQVIEDFIAV---------------DKRVQVSWTGEKIDLSRERAKILL 120
                       ++                      +  +           +    +ILL
Sbjct: 294 LEQGARLELAPLELSRVLRDAVDLMRPRADEKGLALEVVLAPDVPPCVHGDAARLRQILL 353

Query: 121 NLFMVAHASLPRGG------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG---- 170
           NL   A      G       + +      +    F++   G      E+     +     
Sbjct: 354 NLLGNAIKFTEVGHVRLTVSRTSRPESAGRMGLRFTVADTGIGIHPQERAGLFHEFVQAD 413

Query: 171 -NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++        +       L       +  E         +  + 
Sbjct: 414 ASIRRRFGGSGLGLAICKRLVEAMGGEIEVESTPGVGSCFTFEVP 458


>gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
 gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
          Length = 1253

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
                 +  L A      L  S + H+  +P+  +   LE LL + G++      +  + 
Sbjct: 346 EQEQKRAEALAAIDRSKTLFFSNVSHEFRTPLTLMLGPLEELLQQHGLDGHTRVQVEATH 405

Query: 58  MSAIIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            +A+  LK +     Y+                   ++        +IE           
Sbjct: 406 RNALRLLKLVNNLLDYSRVEAGRVQAVYQRLDLQEMTIDLASSFRSIIEKAGMELNVHCS 465

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             +       +   KI+LNL   A     +G       +  +N  +  +K  G      E
Sbjct: 466 PLSASYYADRQMWEKIVLNLLSNAFKYTLQGSISVTLEEQ-ENMAVLKVKDTGVGIPQKE 524

Query: 163 K---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +          T +   I    V  L H +   +  E I+      +  + 
Sbjct: 525 LPHMFERFHRIENTAGRTHEGTGIGLSLVHELVHLHAGTITVESIEGTGSTFTVCIP 581



 Score = 97.5 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 19/213 (8%), Positives = 53/213 (24%), Gaps = 19/213 (8%)

Query: 21   RICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
             + H++ +P+ ++    +L L       + +        +  +      +      S   
Sbjct: 1034 MVSHELKTPLTSLVGFTQLGLRNAQKNQDSLNFSIYEKTNRQLIKMSSLINGFLNVSQLE 1093

Query: 80   LIGLGDIEQVIEDFIAVDKRV--------QVSWTGEKIDLSRERAK-----ILLNLFMVA 126
               +            + + +           +  + ++L     +     +L NL   A
Sbjct: 1094 SGKIHLHLTDFRLDELIREMIADAGLAASGYDFQVDCVELIINADRNKIGTVLTNLLSNA 1153

Query: 127  HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSHDI 181
                     ++I+   +      S+   G   +  +                  I    I
Sbjct: 1154 IKYGANSRVISIACSCTDGYARVSVTDQGIGIKEADISKLFDRYYRIENNQTQHISGFGI 1213

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              Y    +   +  ++  E        L   L 
Sbjct: 1214 GLYLSAEIIGRHHGKIWAESEPGKGTTLFVELP 1246


>gi|146280451|ref|YP_001170604.1| signal transduction histidine kinase [Pseudomonas stutzeri A1501]
 gi|145568656|gb|ABP77762.1| probable signal transduction histidine kinase [Pseudomonas stutzeri
           A1501]
          Length = 793

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 29/236 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
            +     L          S + H++ +P+ +I  +L L+      +  G   E++ + + 
Sbjct: 555 ERKRIERLQRE-----FISTVSHELRTPLTSITGALALVCSNVMGEVPGQMRELLDIAQQ 609

Query: 56  SSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +S      +  +            +      L+   ++        A    VQ+      
Sbjct: 610 NSQRLGALIDDLLDMDKLHAGKMRFDLLEQPLLPQLELALRSNGSYAERHGVQLRLGDCP 669

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    ++L NL   A    P G +V +S +        S++  G      E  
Sbjct: 670 AVQVEIDAMRLQQVLSNLLSNAAKFSPPGEQVELSARMRDGHVRVSVRDRGPGI-SDEFR 728

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                   +       L      ++  E            L 
Sbjct: 729 ERVFQKFAQADSSDSRQQGGTGLGLAISKELIEHMGGQIGFESAPGQGACFWFELP 784


>gi|90578034|ref|ZP_01233845.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
 gi|90441120|gb|EAS66300.1| probable composite two component regulatory protein [Vibrio
           angustum S14]
          Length = 1311

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +    +L++ +  +   + + H+I +PI  I + LEL++      E+ Q+    S S 
Sbjct: 665 LMEANEKSLAATESKSRFLAMMSHEIRTPISGILSLLELMEPHVKTTELRQIHHNLSQSG 724

Query: 61  IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              L                + +        D +  L     +      +   + +    
Sbjct: 725 RNLLNIVNDVLDFSKIEAGKLSINPSENNISDLIHELVQPHSIHAQQKEITFTLWLDPAI 784

Query: 107 EKI--DLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160
                       +IL NL   A               I    S+    FS+   G   + 
Sbjct: 785 AHCLLFDEVRLTQILNNLINNAIKFTVQGNIHLAVDMIQESASQQRLTFSIIDTGIGIKP 844

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++    V              +       LA      ++ +   +     S  + 
Sbjct: 845 EDL-QRLFQPFVQVEQNSNRRFSGTGLGLSICHQLAQLMGGEIVAKSDINIGTTFSVTIP 903


>gi|330447754|ref|ZP_08311402.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491945|dbj|GAA05899.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 488

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 66/228 (28%), Gaps = 18/228 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSA 60
            +        +   L + + HD+ +P+G+I  +   L +       D   +L++  +   
Sbjct: 251 QVKEANQLEQMRNTLLAAVSHDLKTPLGSIIGTATTLSDPNICLPADTQKELLQSIAEEG 310

Query: 61  IIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------WTGEKI 109
               + +        +     V     +   E +      V++ V+         T    
Sbjct: 311 YSLNRSLTKLLDISRYSIKTLVPKRDWVEPEEIIGSATKRVEQLVKFHPIKLTGETMLVS 370

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +I+ NL   A    P G  + IS        +F +   G     PE   +I +
Sbjct: 371 LDYALIEQIMANLIENAAKYSPIGAAIDISTGYHDGCFLFDIADRGCGV-APEDTQRIFE 429

Query: 170 GNV---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  + +    +      L+   +   +          + S  + 
Sbjct: 430 RFYRSEHTKVKGTGLGLAICKLIVSAHNGTINVTSRAGGGSIFSVAIP 477


>gi|310824271|ref|YP_003956629.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397343|gb|ADO74802.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 407

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 48/240 (20%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEV 49
            +     L              S   H++ +P+  +   LE L         +       
Sbjct: 164 TREFEQLLQKEREGVKSRDEFLSIAAHELRTPLTPLKLQLETLRRSVVAAGIDDPWVMRH 223

Query: 50  MQLIRLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDK 98
           ++   +     +  +  +                        I + D  Q   +      
Sbjct: 224 LERSSVQVQRLLQLVDRLLDVSRIATGRLGLLLEDMDLSALTIEVTDRFQEEAEGAGCPL 283

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            V        +       ++L +L   A                 +      ++  G   
Sbjct: 284 EVHTPGRVRGVWDQLRLEQVLSSLISNAIKYGAGHPIDVSVEGK-EEVVRLCVQDQGIGL 342

Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    F +              +  Y    +   +   +              +L K
Sbjct: 343 APEDASRIFERFERAVSPKHYGGMGLGLYVARQIIEAHGGTIAVRSQPGRGATFIVVLPK 402


>gi|288553507|ref|YP_003425442.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288544667|gb|ADC48550.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 660

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 75/235 (31%), Gaps = 26/235 (11%)

Query: 2   AKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQL 52
            +     L         AL  + + I H+I +P+ +I    EL    L     + E+   
Sbjct: 420 TEERQMRLQVFEQEKSQALSRVVAGIAHEIRNPLTSIKTFAELIPKKLHNERFQREISTY 479

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWT 105
           +          ++ +             + L D+ +               + R+ +   
Sbjct: 480 VPKEIDRVNQLIEGLIDYARPREHEKESVQLTDLVRDCAILFERTLLNKGINLRLDLQEE 539

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---------TISVQDSKNENIFSLKINGN 156
                 S +  ++++NL +    ++    +           + +  + ++ +F ++ NG 
Sbjct: 540 QFIYANSNQVKQVIMNLIINGIDAIEDVDEKRKEARDGELCLRLDVNGSDVVFMIEDNGI 599

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                E+  ++++    +      +         HEN+  LL E  +     ++ 
Sbjct: 600 GM-TEEETQKVLEPFYTTKTKGTGLGLAIAHQYVHENEGSLLIESKEGIGTKVTL 653


>gi|225868205|ref|YP_002744153.1| alkaline phosphatase synthesis sensor protein [Streptococcus equi
           subsp. zooepidemicus]
 gi|225701481|emb|CAW98633.1| putative alkaline phosphatase synthesis sensor protein
           [Streptococcus equi subsp. zooepidemicus]
          Length = 441

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 59/215 (27%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLAFGY 73
           +   H++ +P+ +I    E + E+  ++  ++      +   S     I    + L+   
Sbjct: 223 ANASHELRTPVTSIKGFAETIKEMPDDETSLKEDFLDIIYNESLRLERIVEHLLTLSKAN 282

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSRERAKILLNLFMV 125
              +D          +        +           +  +          ++I+LNL   
Sbjct: 283 KTPLDLTEFQLRSFLLYTGQSMRPQLEQKQLELSYALEDSIVVTSDQYLLSQIMLNLLSN 342

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A      GG++ +S Q        ++   G      E   +I +                
Sbjct: 343 AIQYTDNGGRIQLSSQRVAGGVAITVADTGIGISQIEL-DRIFERFYRVNKGRSRQSGGT 401

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  L+     ++            +  L 
Sbjct: 402 GLGLAIVKELSQLLGGQITVTSQLGEGSQFTLFLP 436


>gi|254428255|ref|ZP_05041962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196194424|gb|EDX89383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 699

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 58/238 (24%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+       +    +   + I H+I +P+ AI    ELL +  +     +         
Sbjct: 305 LAQARMQAEDASQTKSQFLANISHEIRTPMTAILGYTELLRDGSLNATDKRRYLTIIQHN 364

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGD-----------------IEQVIEDFIAVDKRVQVS 103
              L  +         +++     +                   +  E  I +       
Sbjct: 365 GDALLALINDVLDLSRIEAGQLHPEQRLFSARVLLDEVIDSLQLRATEKDIDLRIHYLTD 424

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPE 162
                   +    +IL+NL   A     R    V ++  +  +    S++  G      E
Sbjct: 425 LPPTVSGDAFRLRQILVNLIGNAVKFTERGRVHVGVNWDEEASRLNVSVEDTGIGISEGE 484

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I                   +       LA      +      +        + 
Sbjct: 485 LS-RIFLPFSQADASHTRRYTGTGLGLSIARQLARAQDGDIQVFSTLNQGSCFVLDIP 541


>gi|186896336|ref|YP_001873448.1| sensor protein KdpD [Yersinia pseudotuberculosis PB1/+]
 gi|186699362|gb|ACC89991.1| osmosensitive K+ channel signal transduction histidine kinase
           [Yersinia pseudotuberculosis PB1/+]
          Length = 908

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      +        +++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALHMLKTTLSQHQIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I  +         +  NG      +
Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVKGEWLNVDVWDNGPGVTIGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883


>gi|184155773|ref|YP_001844113.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
 gi|183227117|dbj|BAG27633.1| two-component sensor histidine kinase [Lactobacillus fermentum IFO
           3956]
          Length = 504

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/220 (8%), Positives = 58/220 (26%), Gaps = 21/220 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           +     + H++ +P+  I   ++LL+  G +D       +   +  ++    +  + + L
Sbjct: 268 SQFVGDVSHELRTPVAIIQGHMQLLERWGKDDPKQLEESIQAALAETNRMNTLIKEMLDL 327

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EKIDLSRERAKIL 119
                  V+       +++++       + +   +                      +IL
Sbjct: 328 TRAGQVEVNFRNATTPVKKLVNQVYDNFRMIHPDFHFSLDDDLDEDVLVPVYRDHLEQIL 387

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174
           + L   A        ++ +S+  +       ++  G      +                 
Sbjct: 388 IILCDNAVKYSNERKEIHLSLSRNLRAVEIGVQDFGEGISQEDLHRVFDRFYRVDKARSR 447

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +       L       +  E       +    L 
Sbjct: 448 KKGGNGLGLAIAKRLVEGYHGTVTVESQLGSGSLFRITLP 487


>gi|218780092|ref|YP_002431410.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218761476|gb|ACL03942.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 593

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 65/245 (26%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNL-----SSMDLVAL--LCSRICHDIISPIGAI---HNSL-ELLDEVG----- 44
           MA      +      +  L +L  L + I H+I +P+  +      + +LL+E       
Sbjct: 335 MADREKEMMNEKVIEAGKLASLGELAAGIAHEINNPVAIMVEESGWIGDLLEEDEFGDTE 394

Query: 45  ---IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE--------QVIEDF 93
                   +  I+            +      T      + + ++         Q  +  
Sbjct: 395 NVAEISRSVAQIKTQGDRCKEITHKLLSFARRTDPRQQEVNMNELIGEVVDLSSQRAKYA 454

Query: 94  IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSL 151
                +V             E  ++LLNL   A  ++      +VTIS ++        +
Sbjct: 455 NVKVHQVLDDNLNLIQASPSELQQVLLNLINNAIDAIDHKQGGEVTISTENGDGVVNIHV 514

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G          ++ D    +        +       +  +   ++            
Sbjct: 515 ADTGQGI-PDAVLKRVFDPFFTTKPVGKGTGLGLSICYGIIEKMGGKISVNSSVGVGATF 573

Query: 210 SALLE 214
              L 
Sbjct: 574 HISLP 578


>gi|149918425|ref|ZP_01906915.1| Multi-sensor Hybrid Histidine Kinase [Plesiocystis pacifica SIR-1]
 gi|149820725|gb|EDM80135.1| Multi-sensor Hybrid Histidine Kinase [Plesiocystis pacifica SIR-1]
          Length = 596

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 67/234 (28%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIR 54
           +N   +   M+ V  L   I HD  + +  I    +L++              E+ ++  
Sbjct: 213 ENQVRHSQKMEAVGRLAGGIAHDFNNLLTVIMGMCDLMELEDELAEQAFERVSEIRRVSD 272

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL 111
            +       + F R         D    + +  +++   I+                   
Sbjct: 273 TARELVAQLMTFSRRQVMRGQIFDLNEHIRNSVRMLGRLISERIELALCLWESPLWIKTD 332

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD----------SKNENIFSLKINGNLARFP 161
             +  +IL+NL + A  ++P+GG++ +              S++  +  +   G      
Sbjct: 333 PNQLDQILINLVVNASDAMPQGGRIELRTSQGRAPERLDSASEHHVLLEVADTGTGIPED 392

Query: 162 EKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +    V  +  ++K  +  +    H       L 
Sbjct: 393 VLPHIFDPFFTTKKAGSGTGLGLANVYGIVEQSKGHVTVDSALGHGTCFCVFLP 446


>gi|149181573|ref|ZP_01860067.1| sporulation kinase B [Bacillus sp. SG-1]
 gi|148850687|gb|EDL64843.1| sporulation kinase B [Bacillus sp. SG-1]
          Length = 409

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 63/231 (27%), Gaps = 18/231 (7%)

Query: 1   MAKNICFN----LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
           M  N        L  +++V  + + I H+I +P+  +   ++ L E   +++        
Sbjct: 170 MKTNKQIEEMVYLDKLNMVGQMAASIAHEIRNPLSTVKGFIQHLSEDTKDEQFKRFSPLI 229

Query: 50  ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +          +   K  +         + +    D+ +    +      +      
Sbjct: 230 LEELDRTNKIITDYLSITKPEKFHVSVINLTNVIQSSVDLLRPYAAYSNTSIVLNTDNEY 289

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPEK 163
                     + ++N+      S      +      +          +  NG      E+
Sbjct: 290 YIEGDEHHLKQAIMNVIKNGIESTEDKRGIVRIEISTGMLTDTVEIRISDNGIGM-TSEQ 348

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++I      +      +       +  E   ++  +   +   V+  +L 
Sbjct: 349 LSKIGLPFYTTKTKGTGLGSMVTNKIIRELHGKIEYDSQPEKGTVVRIVLP 399


>gi|148264419|ref|YP_001231125.1| multi-sensor hybrid histidine kinase [Geobacter uraniireducens Rf4]
 gi|146397919|gb|ABQ26552.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
           Rf4]
          Length = 769

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 69/244 (28%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQ 51
            K+I     +  + A+  L   I HD  + +  I+    LL              +++++
Sbjct: 377 KKSIEQLRQAQKMEAIGQLAGGIAHDFNNLLTIINGYSTLLLRSLGIDSPQHKEAEQILR 436

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R        ++    + +IE+++   I     +  +   +   +
Sbjct: 437 AGERAADLTRQLLSFSRKQILAPKVLNINTQVKNIEKMLCRLIGEHITLVTNMDPDVGLI 496

Query: 112 SRERAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKI 153
             +  ++   +  +A  +                  L              +  + S+  
Sbjct: 497 KIDPGQVEQIIMNLAVNARDASEDGGRIVIETANAELDDEFAANHPGSVPGSYIMLSVCD 556

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           NG      +   ++ +    +        +    V  +  ++   +      +       
Sbjct: 557 NGMGM-SEDVKRRLFEPFFTTKELGRGTGLGLATVYGIVKQSGGYIDITSELEQGATFKI 615

Query: 212 LLEK 215
            L +
Sbjct: 616 FLPR 619


>gi|157369488|ref|YP_001477477.1| sensor protein KdpD [Serratia proteamaculans 568]
 gi|157321252|gb|ABV40349.1| osmosensitive K+ channel signal transduction histidine kinase
           [Serratia proteamaculans 568]
          Length = 897

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
           A+    +     L   L + + HD+ +P+  +    E+L         +      ++ Q 
Sbjct: 653 AEEAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSNHATQASQIRQQ 712

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKI 109
           +  ++      L   R+  G          L +I      + + +    +++V    E +
Sbjct: 713 VLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGASLHMLEPLMTQHQIKVELPAELV 772

Query: 110 DLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163
            ++ +     ++  NL   A+        + I            +  +G           
Sbjct: 773 LVNCDGSLLERVFTNLLENANKYAGYDATIGIRAHTLPEWLEVEVWDDGPGIPEGKMQLI 832

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 833 FDKFSRGNKESAIPGVGLGLAICRAIIEVHGGRIWAENGANGGASFRFVLP 883


>gi|150017638|ref|YP_001309892.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904103|gb|ABR34936.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 523

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 27/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIRL 55
           K       ++     L   I H++ +P+  I  + +LL+   ++D ++       +  + 
Sbjct: 254 KTNKIMEKTLKSQEELLVNISHELKTPLNVISATAQLLEMYYMDDSIINKKDILIKYFKS 313

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVS 103
             ++     K +      +                  +    +  V          +   
Sbjct: 314 IKLNTYRLSKLINNIVDTSKIEAGFFELNLLNVNIVNVVEEIVMSVTSFVKIKGLNIIFD 373

Query: 104 WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +     +I+LNL   A       G++ + V+D       S+K NG     
Sbjct: 374 TNTEEKIIACDPEKIERIMLNLISNATKFSNDNGEIFVKVKDMNEWVEISVKDNGIGIEE 433

Query: 161 PE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +       +   I    V  +A  +   +  E         +  L 
Sbjct: 434 KKMDIIFDRFEQADKSLSRNAEGTGIGLSLVKSIALLHGGSINVESEYGKGSKFTVTLP 492


>gi|186682409|ref|YP_001865605.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186464861|gb|ACC80662.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1080

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 63/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA---------------IIRL 64
           + + H++ +P+  I    +LL    +  + +Q    +                    I  
Sbjct: 720 AVLSHELRTPLNPILGWAKLLQSPLVSSDKLQQGLSAIERNAKQQVQLVEDLLDISRIIR 779

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLF 123
             + L+FG     + +    +  ++  +  A+   V +  +  ++    +R  +++ NL 
Sbjct: 780 GKLTLSFGAIDLSEPIAAALETVRLAAEAKAIQLEVLLDPSVGQVRGDADRLQQVVWNLL 839

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVESTIDS 178
             A      GG VT+ +          +   G   +              D +   +   
Sbjct: 840 SNAIKFNSTGGWVTVQLTSVDRHAQIQVSDTGKGIQPEFLPHVFELFQQQDSSSTRSFGG 899

Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             +       +   +   +      +      +  L 
Sbjct: 900 LGLGLAIARQVVEAHGGTITAVSAGEGLGATFTVQLP 936


>gi|320353025|ref|YP_004194364.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121527|gb|ADW17073.1| PAS/PAC sensor hybrid histidine kinase [Desulfobulbus propionicus
           DSM 2032]
          Length = 1020

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 60/241 (24%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        ++ V  L   + HD  + + AI    EL              +++I  S++
Sbjct: 639 REQLSQAQKLESVGRLAGGVAHDFNNMLSAILGHAELAMRLCAPNDPIHARLEVIEQSAL 698

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            +   +  +            ++ + +    +   +       +                
Sbjct: 699 RSADLVSQLLAFARKQTVAPKVLDMNETAASLLRMLQRLMGEDIDLVWIPKIDLWPIKID 758

Query: 114 --ERAKILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKINGN 156
             +  ++L NL + A  ++   G                            + ++  NG+
Sbjct: 759 PSQIDQLLANLCVNARDAISGVGKVVIETGNATFDASYCAVHPDFVPGEYVMLAVSDNGD 818

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    I +    +        +    V  +  +N   +               L 
Sbjct: 819 GM-DKDTLAHIFEPFFTTKEPGKGTGLGLATVYGIVKQNNGFIHVYSEPAKGTTFKIYLP 877

Query: 215 K 215
           +
Sbjct: 878 R 878


>gi|293380725|ref|ZP_06626773.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Lactobacillus crispatus 214-1]
 gi|290922689|gb|EFD99643.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Lactobacillus crispatus 214-1]
          Length = 522

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 60/237 (25%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           M   +   +            + H++ +P+  I   L LL+  G +D  +          
Sbjct: 264 MLDRMQGYIEQQK---QFVGDVSHELRTPVAVIEGHLNLLERWGKDDPQILDESIKASLQ 320

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103
               ++      +   +  ++   Y   V  +  +          +  D ++Q+      
Sbjct: 321 EADRMKHLIQEMLDLTRAEQIDVQYPYEVSDVNEIIRRVVADMAMVHPDFKIQLDEDDLP 380

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              E         ++L+ L            ++ +S   +K      ++  G      ++
Sbjct: 381 DDTEIQMYHGHLEQLLVILIDNGIKYSTDRKQINVSAGVTKKNVNIIVQDFGEGISEEDQ 440

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                               + +       L       +  E ++           +
Sbjct: 441 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVASYNGTISVESVEGQGSQFKLKFPR 497


>gi|289566982|ref|ZP_06447384.1| sensor histidine kinase [Enterococcus faecium D344SRF]
 gi|293568417|ref|ZP_06679737.1| two component sensor kinase [Enterococcus faecium E1071]
 gi|294613961|ref|ZP_06693893.1| two component sensor kinase [Enterococcus faecium E1636]
 gi|289161217|gb|EFD09115.1| sensor histidine kinase [Enterococcus faecium D344SRF]
 gi|291588753|gb|EFF20581.1| two component sensor kinase [Enterococcus faecium E1071]
 gi|291593155|gb|EFF24732.1| two component sensor kinase [Enterococcus faecium E1636]
          Length = 347

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           + K+    +  ++    L     S + H+  +P+  I   ++LL      +   +  + +
Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 170

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVS 103
           +I   +  + +    ++L       +                I  +   +      + + 
Sbjct: 171 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 230

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                   + E   ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQINGQIHIKLFETATEIVLEVTDSGVGMNEET 290

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 346


>gi|269961140|ref|ZP_06175508.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834091|gb|EEZ88182.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 987

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPIQKRYAEIINRSGK 516

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +     Y+              D    + D  Q++              ++    
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVG 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                      ++L NL   A     +G          + + + +F +   G      ++
Sbjct: 577 RYWKGDVIRINQVLNNLVGNAIKFTEQGEIDIYVSLNPEDETQVLFEVSDTGIGIAKKDQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T                   +       +       L  +  + H       + 
Sbjct: 637 KTLFDAFTQAEGGMNQTGGTGLGLAISRRIIQAMGGCLEVDSDEGHGSRFWFSIP 691


>gi|260596768|ref|YP_003209339.1| phosphate regulon sensor protein [Cronobacter turicensis z3032]
 gi|260215945|emb|CBA28551.1| Phosphate regulon sensor protein phoR [Cronobacter turicensis
           z3032]
          Length = 437

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 63/215 (29%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E  + +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMHEQTLEGPLREKALHTMREQTYRMEGLVKQLLTLSKIEA 268

Query: 80  LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              +   E +    +                    +V    + +    +    + NL   
Sbjct: 269 APAMQLNETIDVPMMLRVVEREAQTLSQQRQTFTFEVDPQLKVLGNDEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  +   N   FS+   G      E   ++ +                
Sbjct: 329 AVNHTPAGTHITVRWEHVANGARFSVADTGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V      +  RL  E         S LL 
Sbjct: 388 GLGLAIVKHALTHHDARLEIESAPGKGTTFSFLLP 422


>gi|227877765|ref|ZP_03995798.1| two-component sensor histidine kinase [Lactobacillus crispatus
           JV-V01]
 gi|256843616|ref|ZP_05549104.1| two-component system sensor [Lactobacillus crispatus 125-2-CHN]
 gi|256850092|ref|ZP_05555522.1| two-component sensor [Lactobacillus crispatus MV-1A-US]
 gi|262047380|ref|ZP_06020337.1| two-component system sensor kinase [Lactobacillus crispatus
           MV-3A-US]
 gi|312984346|ref|ZP_07791688.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
 gi|227862624|gb|EEJ70110.1| two-component sensor histidine kinase [Lactobacillus crispatus
           JV-V01]
 gi|256615036|gb|EEU20237.1| two-component system sensor [Lactobacillus crispatus 125-2-CHN]
 gi|256713064|gb|EEU28055.1| two-component sensor [Lactobacillus crispatus MV-1A-US]
 gi|260572354|gb|EEX28917.1| two-component system sensor kinase [Lactobacillus crispatus
           MV-3A-US]
 gi|310894271|gb|EFQ43351.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
          Length = 525

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 60/237 (25%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           M   +   +            + H++ +P+  I   L LL+  G +D  +          
Sbjct: 267 MLDRMQGYIEQQK---QFVGDVSHELRTPVAVIEGHLNLLERWGKDDPQILDESIKASLQ 323

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103
               ++      +   +  ++   Y   V  +  +          +  D ++Q+      
Sbjct: 324 EADRMKHLIQEMLDLTRAEQIDVQYPYEVSDVNEIIRRVVADMAMVHPDFKIQLDEDDLP 383

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              E         ++L+ L            ++ +S   +K      ++  G      ++
Sbjct: 384 DDTEIQMYHGHLEQLLVILIDNGIKYSTDRKQINVSAGVTKKNVNIIVQDFGEGISEEDQ 443

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                               + +       L       +  E ++           +
Sbjct: 444 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVASYNGTISVESVEGQGSQFKLKFPR 500


>gi|182701639|ref|ZP_02612274.2| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671523|gb|EDT83497.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 417

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 177 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 236

Query: 55  LSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT 105
                       +                 VD    +  I     +  +  D  +QV   
Sbjct: 237 DELQRLNRLTVSIEDLSRCEGSKLRLNKSEVDLETVITTILTNFEKQLLDKDINLQVDIK 296

Query: 106 GEKIDLSRERA-KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              I + +++  ++++N+   A       G++ +      +    S+K +G      +  
Sbjct: 297 HINIMIDKDKISQVIINIISNAIKYTSDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 356

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 357 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 411


>gi|206977367|ref|ZP_03238263.1| sporulation kinase B [Bacillus cereus H3081.97]
 gi|217961495|ref|YP_002340065.1| sporulation kinase B [Bacillus cereus AH187]
 gi|222097456|ref|YP_002531513.1| sporulation kinase b [Bacillus cereus Q1]
 gi|229140739|ref|ZP_04269286.1| hypothetical protein bcere0013_38340 [Bacillus cereus BDRD-ST26]
 gi|206744358|gb|EDZ55769.1| sporulation kinase B [Bacillus cereus H3081.97]
 gi|217065675|gb|ACJ79925.1| sporulation kinase B [Bacillus cereus AH187]
 gi|221241514|gb|ACM14224.1| sporulation kinase B [Bacillus cereus Q1]
 gi|228642712|gb|EEK98996.1| hypothetical protein bcere0013_38340 [Bacillus cereus BDRD-ST26]
          Length = 424

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|218781499|ref|YP_002432817.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
 gi|218762883|gb|ACL05349.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1372

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 61/240 (25%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
            M + +   +  M+ +  L   I HD  + +  I    ELL E     G+E E  + I  +
Sbjct: 989  MERRLQ-QIQKMESIGNLAGGIAHDFNNILSPIIGMSELLLEDLPANGLEYENAEEIFKA 1047

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS---- 112
                   +K +      +        +  + + +         + +    +         
Sbjct: 1048 GKRGSELVKQILAFSRQSEKTMIPTRIQSVLKEVLKLCRSTIPINIEIYQDIQADCGLIL 1107

Query: 113  ---RERAKILLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKING 155
                +  ++ +NL   A+ ++                      +  +     + S+  NG
Sbjct: 1108 ADSTQIHQVAMNLITNAYHAIEKTKGKISISLTESSFDSLSMKTDLEPGKYAVLSVSDNG 1167

Query: 156  NLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +                         +    V  +  E+K  +                 
Sbjct: 1168 HGISPDMINKIFDPYFTTKEKGKGTGLGLSVVYGIMKEHKGDIFVNSEVGKGTTFELYFP 1227


>gi|119492094|ref|ZP_01623547.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119453304|gb|EAW34469.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 486

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 65/203 (32%), Gaps = 11/203 (5%)

Query: 23  CHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
            H++ +PI  I   LE L  +   + ++++L++         +  + L            
Sbjct: 283 SHELRTPITIIDCHLEQLTTDSQEQKKIVKLLKDELNRMNRLVNDLLLLAKAERPDFLNC 342

Query: 82  GLGDIEQVIEDFI-------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
            + +I  + E+           +  ++V  TG  I   +   +  LNL   A        
Sbjct: 343 EIVEIGSLTEELYTKATTLAKRNWCLEVKGTGRIIADPQRLTQAFLNLAHNATKYTSEDD 402

Query: 135 KVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191
            +T+    SK +    ++  G         + F +          +   +    V  +A 
Sbjct: 403 VITVGATISKGKFSLWVRDTGEGIDTAHQKKIFERFERDVNGRRSEGLGLGLAIVKAIAS 462

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            ++  +  E         + ++ 
Sbjct: 463 AHQGWVELESQVGIGATFTIVIP 485


>gi|91792026|ref|YP_561677.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
 gi|91714028|gb|ABE53954.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
           OS217]
          Length = 853

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 64/234 (27%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  +      +    +   + + H+I +P+ AI   ++++ E  ++ +  + +     SA
Sbjct: 266 MRDSAE---QANRSKSDFLANMSHEIRTPMNAIIGFVDIVLEGDLDQKQSKHLMTVRNSA 322

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
                 +             + L      ++  +                   +R+    
Sbjct: 323 KDLHNLLNDILDVAKLEAGKVELESAPFSVKKLLGQVIKTFELKAKDKGLVFIQRIAEDL 382

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             + +  +    ++L+NL   A      G       Q ++ +  F ++  G      +  
Sbjct: 383 PAQFLGDALRLKQVLMNLIGNAIKFTASGSITIAVEQINQEQLQFIIRDTGIGIAKDKLE 442

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                    D +         +       L      ++  E  +         L
Sbjct: 443 HIFESFTQADTSTSRKYGGTGLGTTISKRLVELMGGKIWLESDEGVGTTFYFTL 496


>gi|17228038|ref|NP_484586.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17129887|dbj|BAB72500.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 573

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 63/243 (25%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEV------GIED 47
            K     L +    A           + + H++ +P+ AI    +LL +         + 
Sbjct: 327 RKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSLNEKQQ 386

Query: 48  EVMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           E +  I  S    +  +  +         +        +   +    +  V +  I+   
Sbjct: 387 EYINCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGL 446

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGN 156
           ++      E      +  +I   L  +   ++       +   V+       F +   G 
Sbjct: 447 KLTQEIDPEANICIADDRRIKQMLLNLLTNAIKFTSVGEVSLIVKRVPEGINFIISDTGI 506

Query: 157 LARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                      +  + +D  +    +   +       LA  +   +            + 
Sbjct: 507 GIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVGSQFTL 566

Query: 212 LLE 214
            L 
Sbjct: 567 FLP 569


>gi|153948325|ref|YP_001400084.1| sensor protein KdpD [Yersinia pseudotuberculosis IP 31758]
 gi|152959820|gb|ABS47281.1| sensor protein KdpD [Yersinia pseudotuberculosis IP 31758]
          Length = 908

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALHMLETTLSQHQIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I  +         +  NG      +
Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVKGEWLNVDVWDNGPGVTIGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883


>gi|330862949|emb|CBX73084.1| sensor protein kdpD [Yersinia enterocolitica W22703]
          Length = 899

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I                ++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHILETTLNHHHIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I            +  NG      +
Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYDALLGIRATVQGEWLNVEVWDNGPGVTAGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +        L 
Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQEGGASFHFTLP 883


>gi|289626968|ref|ZP_06459922.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289651376|ref|ZP_06482719.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330869188|gb|EGH03897.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 530

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L           A ++ + V  +   +   
Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVTEFRSSSAPNQSIHVDISPGTLTTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            R        + +      +  I  ++ +G         
Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHL- 474

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++ +    +      +  Y    L   N+  L           L   
Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522


>gi|255013618|ref|ZP_05285744.1| putative two-component system sensor histidine kinase [Bacteroides
           sp. 2_1_7]
          Length = 364

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 51/229 (22%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +     S  L +   + I H+I  P+ AI     LL +    +   + I L   + 
Sbjct: 129 MEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGELRQEYINLIQTNN 188

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTG 106
            +                          D    + +     +  +     +       + 
Sbjct: 189 ELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRGVALTYPASLDSF 248

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L N    A      G  +       +NE + S+   G       K   
Sbjct: 249 LLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAM-ENEVLLSVTDTGEGMSEEIKLHV 307

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +      R+               L 
Sbjct: 308 FDRFYKGRNQKQGIGLGLSICQNIVERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|227515635|ref|ZP_03945684.1| sensor histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|260663511|ref|ZP_05864401.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
 gi|227086065|gb|EEI21377.1| sensor histidine kinase [Lactobacillus fermentum ATCC 14931]
 gi|260552052|gb|EEX25105.1| two-component sensor histidine kinase [Lactobacillus fermentum
           28-3-CHN]
          Length = 501

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/220 (8%), Positives = 58/220 (26%), Gaps = 21/220 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           +     + H++ +P+  I   ++LL+  G +D       +   +  ++    +  + + L
Sbjct: 265 SQFVGDVSHELRTPVAIIQGHMQLLERWGKDDPKQLEESIQAALAETNRMNTLIKEMLDL 324

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EKIDLSRERAKIL 119
                  V+       +++++       + +   +                      +IL
Sbjct: 325 TRAGQVEVNFRNATTPVKKLVNQVYDNFRMIHPDFHFSLDDDLDEDVLVPVYRDHLEQIL 384

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174
           + L   A        ++ +S+  +       ++  G      +                 
Sbjct: 385 IILCDNAVKYSNERKEIHLSLSRNLRAVEIGVQDFGEGISQEDLHRVFDRFYRVDKARSR 444

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +       L       +  E       +    L 
Sbjct: 445 KKGGNGLGLAIAKRLVEGYHGTVTVESQLGSGSLFRITLP 484


>gi|218901767|ref|YP_002449601.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|228913259|ref|ZP_04076895.1| hypothetical protein bthur0012_5030 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228925761|ref|ZP_04088845.1| hypothetical protein bthur0010_4870 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228944326|ref|ZP_04106699.1| hypothetical protein bthur0007_5000 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229120223|ref|ZP_04249474.1| hypothetical protein bcere0016_5390 [Bacillus cereus 95/8201]
 gi|218534805|gb|ACK87203.1| sensor histidine kinase [Bacillus cereus AH820]
 gi|228663264|gb|EEL18853.1| hypothetical protein bcere0016_5390 [Bacillus cereus 95/8201]
 gi|228815228|gb|EEM61476.1| hypothetical protein bthur0007_5000 [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228833776|gb|EEM79329.1| hypothetical protein bthur0010_4870 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228846398|gb|EEM91414.1| hypothetical protein bthur0012_5030 [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 392

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 170 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 229

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V      +       ++++
Sbjct: 230 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 289

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 290 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 349

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 350 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 388


>gi|213584048|ref|ZP_03365874.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-0664]
          Length = 396

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 63/221 (28%), Gaps = 24/221 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++  + + H++ +P+  I  +L+LL    +   V +L+   + S+ + LK +     ++ 
Sbjct: 1   SMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSK 60

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +   E    + +                     ++               +++
Sbjct: 61  IESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVSLNGDPMRLQQVI 120

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173
            NL   A       G + + V+   +     ++  G      E   ++ D   +      
Sbjct: 121 SNLLSNAIKFTDI-GCIVLHVRCDGDYLSIRVRDTGVGIPAKEVV-RLFDPFFQVGTGVQ 178

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       L       +  +         +  + 
Sbjct: 179 RNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTLRIP 219


>gi|170750776|ref|YP_001757036.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657298|gb|ACB26353.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 946

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 62/241 (25%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            +       S  L A+  L   + HD  + +  I +S+E L    + +E  +        
Sbjct: 551 RQAEEALRQSQKLEAIGQLTGGVAHDFNNLLTIIRSSVEFLRRPELAEERRRRYLDAVSD 610

Query: 54  --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R         D    L  I  +++       RV +        +
Sbjct: 611 TVDRAAKLTGQLLAFARRQALKPQVFDIGARLRSIADMLDSVTGARIRVTIDLPETPRYV 670

Query: 112 SRERAKILLNLFM---VAHASLP-------------RGGKVTISVQDSKNENIFSLKING 155
             + ++    L      A  ++                  +      +       +   G
Sbjct: 671 RADESQFETALINMAVNARDAMDGEGSLILRLEGDSPMPPIRGHAGATGPFVAVRVSDTG 730

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +   +I +    +        +    VI  A ++   +       H    S  L
Sbjct: 731 AGIPDADLG-RIFEPFFTTKEVGKGTGLGLSQVIGFAKQSGGDIDVASALGHGTTFSLYL 789

Query: 214 E 214
            
Sbjct: 790 P 790


>gi|196041328|ref|ZP_03108622.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
 gi|196027813|gb|EDX66426.1| sensor histidine kinase [Bacillus cereus NVH0597-99]
          Length = 416

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V      +       ++++
Sbjct: 254 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 313

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 373

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 412


>gi|39656315|gb|AAR29880.1| putative histidine kinase HHK1p [Cochliobolus heterostrophus]
          Length = 2370

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +N+     +    +L  + + H++ +P+  +    ELL    +  E         + A  
Sbjct: 1876 RNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPLNGEQSGYADSIRVCADT 1935

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTG 106
             L  +     Y+      + + ++   + + IA                  +++++    
Sbjct: 1936 LLSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELDPEM 1995

Query: 107  EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162
              +       +IL+NL   ++   PR       V         +   S+   G      E
Sbjct: 1996 LVMGDPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDQETSEWADVTCSVIDTGIGI-PDE 2054

Query: 163  KFTQIVDGNVE------STIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
            +  ++     +       +     +       L        +  +        ++  L
Sbjct: 2055 QKQKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGTVRLDSQPGKGTTVTFSL 2112


>gi|49480165|ref|YP_034831.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|165871798|ref|ZP_02216442.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167635651|ref|ZP_02393962.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167640635|ref|ZP_02398896.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170688537|ref|ZP_02879744.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|177653773|ref|ZP_02935874.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190568161|ref|ZP_03021070.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|196035747|ref|ZP_03103150.1| sensor histidine kinase [Bacillus cereus W]
 gi|227816557|ref|YP_002816566.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|254684350|ref|ZP_05148210.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254722152|ref|ZP_05183941.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254738814|ref|ZP_05196517.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254743800|ref|ZP_05201484.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254755038|ref|ZP_05207072.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254762228|ref|ZP_05214072.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|49331721|gb|AAT62367.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|164712523|gb|EDR18056.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|167511350|gb|EDR86735.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167528910|gb|EDR91666.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170667562|gb|EDT18318.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172081165|gb|EDT66241.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|190560653|gb|EDV14629.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|195991714|gb|EDX55679.1| sensor histidine kinase [Bacillus cereus W]
 gi|227007313|gb|ACP17056.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
          Length = 416

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V      +       ++++
Sbjct: 254 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 313

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 373

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 412


>gi|51245776|ref|YP_065660.1| Ntr family two-component system sensory/regulatory protein
           [Desulfotalea psychrophila LSv54]
 gi|50876813|emb|CAG36653.1| related to two-component system sensory/regulatory protein (Ntr
           family), probably cold-shock inducible [Desulfotalea
           psychrophila LSv54]
          Length = 1014

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 64/242 (26%), Gaps = 31/242 (12%)

Query: 4   NICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQL 52
            +   L  +  + A+  L   I HD  + +  I    EL  +            D+V++ 
Sbjct: 632 KLELRLRQAQKMEAIGALAGGIAHDFNNILAVILGYAELAKDEIPANSIIGEDLDQVIEG 691

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +       L F R        +   + L +  +++   +     +Q         + 
Sbjct: 692 GNRAKELVKQILAFSRQEKVKRLPLQVQVLLKETMRMLRPSLPSTIEIQTEIDPLCGFVL 751

Query: 113 RER---AKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLKI 153
            +     +I++NL   A+ ++ + G                    S     +  +  +  
Sbjct: 752 ADPTQVHQIIMNLCTNANHAMEKSGGRLDIELKRISVDEGNRHKYSSLVPGDYVVLVVAD 811

Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G                    I     +    +  +  E    +      +H  V S  
Sbjct: 812 TGEGIAPHNIGKIFEPYFTTKEIGKGTGMGLATIHGIIREYGGIIDVASDPEHGSVFSVF 871

Query: 213 LE 214
             
Sbjct: 872 FP 873


>gi|88860218|ref|ZP_01134856.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
 gi|88817416|gb|EAR27233.1| putative sensory box histidine kinase/response regulator
           [Pseudoalteromonas tunicata D2]
          Length = 915

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 36/246 (14%)

Query: 4   NICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +   ++  +L +       + + H++ +P+ AI  SLELL       E  +LI  +SMS
Sbjct: 385 ELTQAITQAELASKIKSEFLAMMSHELRTPMNAIIGSLELLSLSINAHEESELINTASMS 444

Query: 60  AIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           A   +  +                 T   D    + +I +  E   +      +     K
Sbjct: 445 AHNLVNILNDILDINKIESGKLEIETHDFDHQQLIYNIVKTFESTASNQGVTLIIHEDTK 504

Query: 109 IDLS-----RERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKIN 154
           +            +I++N+   A                      +     E I+ +   
Sbjct: 505 MPPIVSGDEIRVRQIIMNIISNAVKFTAGNDKEIKIVTFCIQWRQIGGCLFEIIYEIIDT 564

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      E   ++    +              +       LA      +  +        
Sbjct: 565 GIGIN-QETQKRLFTPFIQAEKSTTRKFGGTGLGLAISGKLADMMGGSIELKSHVGIGSK 623

Query: 209 LSALLE 214
            +  L 
Sbjct: 624 FTIKLP 629


>gi|84687059|ref|ZP_01014942.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84665033|gb|EAQ11514.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Rhodobacterales bacterium HTCC2654]
          Length = 596

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +         S  L AL  + + + H++  P+ A+   L     LL     E        
Sbjct: 350 LQVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQRKRPEEALSSFQR 409

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----W 104
           +  LI    +       + R        +D    +     ++E  +   +          
Sbjct: 410 IDDLIERMGLITKQLKSYARKGGDAFQPMDVRQSVSMALSMMEPQLKRRQVRITRNVPRE 469

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
               +  +    ++L+NL   A  +        + +      + + S++ NG      E 
Sbjct: 470 PVMIMGDNVRLEQVLINLLRNAIDATKSVDDPQVDILLTGGEQVVISVRDNGPGV---ED 526

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             Q+ +    +    D   +       +  +   RL          V    L 
Sbjct: 527 LDQLFEPFYTTKAPGDGVGLGLAISSGIVGDFGGRLTARNGTAGGAVFEVELP 579


>gi|150017793|ref|YP_001310047.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904258|gb|ABR35091.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium beijerinckii NCIMB 8052]
          Length = 471

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 66/232 (28%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           +AK++    +   L   L S + H++ +P+  +   +E   +       E  ++      
Sbjct: 238 LAKSLN---NQEMLRKRLTSDMAHELRTPLTTLKTHIEAFADGIWEPTSERFEVFYEEID 294

Query: 59  SAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGE 107
                +  +R                +D    L  I    +   +         ++    
Sbjct: 295 RMTKMVDDLRHLSKLEQTSIGLNKSRIDISKELEKIIYTFKPLYSKGNYELDTSITPNIV 354

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---F 164
            +    +  +I+ NL   ++  L   GKV + ++      +  +  NG      +    F
Sbjct: 355 AMIDVDKFKQIITNLLSNSYKYLKPNGKVKVELKKENENVVIKVIDNGIGIPEKDIPYIF 414

Query: 165 TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    ++          I       L   +   +  E   +     +    
Sbjct: 415 ERFYRSDLSRNKNTGGSGIGLTITKALVEAHGGNIYLESKINQGTKFTIHFP 466


>gi|323158860|gb|EFZ44871.1| sensor protein kdpD domain protein [Escherichia coli E128010]
          Length = 532

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 287 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 345

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 346 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 405

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 406 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 465

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 466 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 518


>gi|308189064|ref|YP_003933195.1| aerobic respiration control sensor protein [Pantoea vagans C9-1]
 gi|308059574|gb|ADO11746.1| aerobic respiration control sensor protein [Pantoea vagans C9-1]
          Length = 783

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                Q+              +IL NL 
Sbjct: 348 KVQLDNQPLDFTGFLADLENLSGLLAQPKGLKFVLAPQLPLPHMISTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A     +G  V     +      F ++ +G   R  E+                    
Sbjct: 408 GNAVKFTQQGEIVVRVAYEQDETLRFEVQDSGMGIRQEEQDKIFAMYYQVKDQHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +            +  ++
Sbjct: 468 GTGIGLAVSRRLAQAMGGDIHVHSAPGQGSCFTVEIK 504


>gi|254000195|ref|YP_003052258.1| signal transduction histidine kinase NtrB [Methylovorus sp. SIP3-4]
 gi|313202160|ref|YP_004040818.1| signal transduction histidine kinase NtrB [Methylovorus sp. MP688]
 gi|253986874|gb|ACT51731.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylovorus sp. SIP3-4]
 gi|312441476|gb|ADQ85582.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylovorus sp. MP688]
          Length = 360

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     +       LL   + H+I +P+G +  + +LL+    +  + +  ++    A 
Sbjct: 120 AREERMLIQQQANAELL-RNLAHEIRNPLGGLRGAAQLLEHELPQVNLREYTQVIIKEAD 178

Query: 62  IRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
                M               +    L  +  ++         V+  +     +L  +R 
Sbjct: 179 RLQSLMDRLLVPHRVPKYEPTNIHEVLERVRSLLLAESPKAIMVKRDYDTSLPELIGDRE 238

Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQ----------DSKNENIFSLKINGNLARFPEK 163
              + +LN+   A  ++   G++T+  +            +      +  NG     P+ 
Sbjct: 239 KLIQAVLNIARNAAQAMQGTGQITLRTRAERQVTLAKKRYRVAIRLQIIDNGPGI-PPDI 297

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I    V        +          ++   +  E         + LL 
Sbjct: 298 RDRIFYPLVSGREGGSGLGLTLAQTFITQHHGMIECESEPGK-TCFTILLP 347


>gi|268317252|ref|YP_003290971.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262334786|gb|ACY48583.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 505

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 70/234 (29%), Gaps = 26/234 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRL 55
           +N    L ++     +   I HD  + +      L+LL                +  +  
Sbjct: 139 QNQRHRLETL---GRMALGIAHDFNNLLMTFLGHLDLLRRSLSPETISEEVTHHLMALEQ 195

Query: 56  SSMSAIIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQ--------- 101
           ++      ++ ++             +D    L +   +   +   + R Q         
Sbjct: 196 AARDGAALMRKLQEYVRQEKPTALEAIDLPALLEECLMLTRPYWYNEPRRQGIDIRVETQ 255

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARF 160
           +        ++ E  ++  NL + A  ++P+GG + I +  D +   I  +   G     
Sbjct: 256 LEPVPPVRGIASELRQVFTNLILNAVQAMPQGGTLRIATDFDKERGVIVRVSDTGIGMPE 315

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +I +    +  +   +    V  +  E++  +  E         +    
Sbjct: 316 S-VRRRIFEPLFTTKPEGSGMGLAIVAGIVREHEGSIEVESALGEGTTFTLYFP 368


>gi|226309995|ref|YP_002769889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226092943|dbj|BAH41385.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 474

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 61/223 (27%), Gaps = 18/223 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMS----A 60
            +  L     S + H++ +P+ +I    E L     +E       +++I   +       
Sbjct: 247 KNEKLKNDFISSVSHELRTPLTSIKGWGETLISGGLEEPEETMLGLEVISKETDRLIGLV 306

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLG---DIEQVIEDFIAVDKRVQVSWTGEK-----IDLS 112
              L F +   G        + +        +     A  K++++           +   
Sbjct: 307 EELLDFSKFQSGEMKLSRVPMDVRELLQDLHLQFSVRAHAKQIELKLETPPTPLIVMGDP 366

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
               ++ +NL   A    P+ G + I+   S +  + ++   G      +          
Sbjct: 367 NRLKQVFVNLLDNALKFTPQNGSIVIAASLSADRLLVTVTDTGEGINPEDLPHVTEKFFK 426

Query: 173 ES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +       +   +  R            +   L 
Sbjct: 427 GRSKLSGSGLGLAICKEIIQLHAGRFSVSSALGQGTSIMVDLP 469


>gi|254504034|ref|ZP_05116185.1| hypothetical protein SADFL11_4073 [Labrenzia alexandrii DFL-11]
 gi|222440105|gb|EEE46784.1| hypothetical protein SADFL11_4073 [Labrenzia alexandrii DFL-11]
          Length = 866

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 32/237 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   + HD  + + AI    +LL           + +  I+ ++  A   
Sbjct: 484 QSQKMQAIGQLAGGVAHDFNNVLTAIIGFSDLLLASHRPTDPSFQDIMNIKQNANRAAGL 543

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------- 116
           ++ +             + L D+   +   +      +V                     
Sbjct: 544 VRQLLAFSRRQTLRPQQLELNDVLADLSILLDRLLGEKVDLKVIHGRDLWPVMADLNQLE 603

Query: 117 KILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKINGNLARF 160
           ++++NL + A  ++P                                +  ++  G+    
Sbjct: 604 QVIVNLAVNAGDAMPDGGRLTISTRNVSESESTQFENTRGMPPGEYMLVEVEDTGHGI-P 662

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           P+   +I D    +        +    V  +  +    +      D        L +
Sbjct: 663 PDVMEKIFDPFFSTKEVGKGTGLGLSTVYGIVKQTGGFIFCTSEIDEGTTFRLFLPR 719


>gi|193214503|ref|YP_001995702.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
 gi|193087980|gb|ACF13255.1| PAS/PAC sensor hybrid histidine kinase [Chloroherpeton thalassium
           ATCC 35110]
          Length = 1123

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQLIRL 55
           +        ++ + +L   I HD+ + +  I  S++ L     +         V Q  + 
Sbjct: 740 EKQLLRTQRLENIGMLAGGIAHDLNNILSPILLSIQYLKMKVQDPHLSDVLDSVRQSAQR 799

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            +      L F +   G    +     + ++E +I D       V ++       +S + 
Sbjct: 800 GADMVKQILSFSKGREGKRIPIKMHHLVNELESLIYDTFPKGVTVDLNVPKSLSCISGDP 859

Query: 116 ---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157
               ++LLNL + A  ++                           +      S+   G  
Sbjct: 860 TELQQVLLNLCVNARDAMQEAGVLSIKAEEAFFDASTPNMPPELKTGVYIHLSVSDTGTG 919

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +I D    +        +  + V  +  ++   L      DH         
Sbjct: 920 I-PEHLIDKIFDPFFTTKEAGKGTGLGLFTVHGIVKKHNGFLSVHSKLDHGTTFHLYFP 977


>gi|153868900|ref|ZP_01998629.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074529|gb|EDN71374.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 934

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 66/243 (27%), Gaps = 34/243 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA- 60
           AK I    +     +L  + + H++ +P+ AI    +++       +  Q        + 
Sbjct: 455 AKEIAEAANQAK--SLFLANMSHELRTPLNAILGFAQIMHRSQTLSQEHQENVNVINRSG 512

Query: 61  -------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKID 110
                     L   ++  G     ++ I L  +   + D        K++Q+    +   
Sbjct: 513 EYLLSLINDVLDMSKIEAGKITLDETNIDLYRLLDEVHDLFYLRAESKQLQLDIERDNNV 572

Query: 111 LSRER------AKILLNLFMVAHA---------SLPRGGKVTISVQDSKNENIFSLKING 155
                       ++L+NL   A            +            ++    F ++  G
Sbjct: 573 PRYLYTDGKKLRQVLINLLSNALKFTQEGGIHLYINDITPPLSKETMTEVILEFQVRDTG 632

Query: 156 NLARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 E   ++ +   ++     + +   +               +  +         +
Sbjct: 633 PGIAENE-MDKLFEAFTQTATGIASQEGTGLGLPISRKFVQLMGGDISVQSKVGEGTTFT 691

Query: 211 ALL 213
             +
Sbjct: 692 FSI 694


>gi|220928586|ref|YP_002505495.1| histidine kinase [Clostridium cellulolyticum H10]
 gi|219998914|gb|ACL75515.1| histidine kinase [Clostridium cellulolyticum H10]
          Length = 310

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 70/227 (30%), Gaps = 23/227 (10%)

Query: 10  SSMDLV-ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKF 66
            ++++    L + I HDI +P+ ++   +E+L   +     E  + + +    A    K 
Sbjct: 79  QTLEIAHKQLIANISHDIRTPLTSLLGFVEVLQKGDGISNTEQKEYLDIIQTKAQNLYKM 138

Query: 67  MRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           ++  F  +        +              I    +DF+      ++      + +  +
Sbjct: 139 IQDFFELSKLESEDTPIRLVKTDLTDLAEEVIAAFYQDFVMNGITPEIQLPQHPVYVWGD 198

Query: 115 R---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
           R    +IL NL   A      G    ISV++   +    +   GN     +    F ++ 
Sbjct: 199 RISLQRILNNLISNALKYGKDGRVTGISVREEVEKVWLDVWDRGNGIPGQDLPLVFNRLY 258

Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +          +       L  +    +          V S  L
Sbjct: 259 TSEISRNSSMRGTGLGLAITKQLVEKQNGEIEVSSNPGEKTVFSFSL 305


>gi|148653889|ref|YP_001280982.1| histidine kinase [Psychrobacter sp. PRwf-1]
 gi|148572973|gb|ABQ95032.1| histidine kinase [Psychrobacter sp. PRwf-1]
          Length = 555

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 68/218 (31%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
               + H++ +P+  I   +E   +   ++ +  +   L +   +   + +      +  
Sbjct: 303 FVGNVSHELRTPLTVIMGYIETFSDQPDLDPKWRRGFSLMTQQTVRMNQIINDLLLLSRL 362

Query: 77  VDSLIGLGDIEQV-------------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            +      +   +                       + +    +           LLNL 
Sbjct: 363 ENEESIQSERVDMPKLLTRIFDDAQAYNKDYNHLIDLHLDSQQDIYGAEGYLHSALLNLV 422

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P+GG+V I+ Q+ K   +F++  NG      E   ++ +           +  
Sbjct: 423 TNAIKYTPKGGEVRITWQEVKEGCLFTVSDNGIGI-ADEHLDRLTERFYRVDGGRSRSTG 481

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  + ++++ +L  E ++        L  +
Sbjct: 482 GTGLGLAIVKHVLYQHEAKLTIESVEGKGSKFHVLFPR 519


>gi|229526741|ref|ZP_04416145.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
 gi|90074862|dbj|BAE87106.1| LuxQ [Vibrio cholerae bv. albensis]
 gi|229336899|gb|EEO01917.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae bv.
           albensis VL426]
          Length = 857

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTATIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|150391047|ref|YP_001321096.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149950909|gb|ABR49437.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 461

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +NI   +    + + L   I HD+ +P+  I  +                  L+ ++  
Sbjct: 223 RENIRIAMEREKMHSNLLRAISHDLRTPLTGIVGASGVILENLNQLEKSSIESLVSDINE 282

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           E   +  +  + ++     +   +       VD ++                        
Sbjct: 283 EAIWLNSLVENILNMTRIYEGKLVIEKKYEVVDDVVSEAINHANSFAKTRSIFVSMPDEI 342

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +   +   ++L+NL   A         + ++V    +  +F +  NG+         
Sbjct: 343 VTVLIDGKLIVQVLINLLDNAIKHTEDHCSIFVNVYIEDDMAVFEVADNGDGIDES-IHN 401

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  V              +       +   +   +      +   + S  L 
Sbjct: 402 SLFDSFVTISSKIIDNKRGMGLGLSICKAIVEAHGGTITGGKSTEGGALFSFRLP 456


>gi|114567195|ref|YP_754349.1| sensor histidine kinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338130|gb|ABI68978.1| sensor histidine kinase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 465

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 70/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + ++       +         L + I H++ +P+  +   LE +      ++ E + L++
Sbjct: 228 LGRDFNLMAQKLDDVEKNRRRLTADISHELRTPLTFLRGQLEGMQTGSIPLDVENIALLQ 287

Query: 55  LSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +     +K +                       L  +  V            +    
Sbjct: 288 DEVIRLSHLVKELDNLSLVENRAVSLNLSRFPLSELLEHLTPVSLAMQDKGISYSIDIDS 347

Query: 107 EKIDLSRERAKILLNLF---MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
              ++  +R ++L  L      A   + +GG+VT+S++  +N   F++  NG        
Sbjct: 348 AITEIYADRDRLLQILLNLLSNAMQHVEQGGQVTLSIKQHRNHLQFAVADNGRGIPPENL 407

Query: 161 PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P  F +    +           +            + ++  E       V    L 
Sbjct: 408 PHVFERFYRVDDSRNRREGGMGLGLAIARGYVEAQQGKIWVESSTGCGTVFYFTLP 463


>gi|298242402|ref|ZP_06966209.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
 gi|297555456|gb|EFH89320.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
          Length = 400

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEV----- 49
           +       + +  L  L  L + + H++ +P+  I   +    +L++    + E      
Sbjct: 154 LRAKQEQLVQAGKLATLGELTTGVAHELNNPLNNIGLFVGNAIDLIELGMADTEPGRILQ 213

Query: 50  -----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRV 100
                MQ +R ++        F R A     +++    +     ++ + + +     K  
Sbjct: 214 ELSNAMQQVRKATEIISHLRTFGRAASVSRETINVTQVIQRSISLMGEQLRLRLIEVKMQ 273

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLA 158
                   +  + +  ++ +NL   A  +L       ++I           S+   G   
Sbjct: 274 FPEEDIFVMGNAIQMEQVFINLLTNARDALTSAPTKIISIECIRRDEMIEISVADTGPGI 333

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I D    +        +       +  E+   +  +            L 
Sbjct: 334 PI-ELEQRIFDPFFTTKEVGAGTGLGLSITYGIIKEHNGAITVQSRLGEGARFLIQLP 390


>gi|283784459|ref|YP_003364324.1| two-component sensor kinase [Citrobacter rodentium ICC168]
 gi|282947913|emb|CBG87475.1| two-component sensor kinase [Citrobacter rodentium ICC168]
          Length = 895

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 60/229 (26%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +          L   L + + HD+ +P+  +    E+L      +      + S +   
Sbjct: 652 EEQARLASERESLRNALLAALSHDLRTPLTVLFGQAEILTLDLASEGSAHAKQASEIRQQ 711

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           I            +  ++            +       +      + + V +S       
Sbjct: 712 ILNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALKMLEPGLLQPVNLSLPAPLTL 771

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKF 164
           +  +     ++L+NL   A        ++ I  Q + N     +  NG           F
Sbjct: 772 IHVDGPLFERVLINLLENAIKYAGPQAEIGIDAQVTNNRLQLEVWDNGPGIPEGQQQFIF 831

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +   GN ES +    +       +   +   L               L
Sbjct: 832 DKFARGNKESAVPGVGLGLAICRAIVEVHGGTLTVRNRPQGGACFRVTL 880


>gi|262394408|ref|YP_003286262.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
 gi|262338002|gb|ACY51797.1| hypothetical protein VEA_003637 [Vibrio sp. Ex25]
          Length = 1055

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 63/238 (26%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 386 EKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTPLTATQRDYVDTIETSSQ 445

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105
           + L  +     ++     ++ +      + + I                 V   +  +  
Sbjct: 446 LLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQVSISRNTP 505

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161
              +       +I++N    A     +G       T  +++ +    FS+K +G      
Sbjct: 506 YHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVKDSGIGIDEQ 565

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   +I                   +       L       +  E            L
Sbjct: 566 Q-QKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGSRFFFEL 622


>gi|298528974|ref|ZP_07016377.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510410|gb|EFI34313.1| Hpt sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 714

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 56/238 (23%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       L +    +   + + H++ +PI +I + L+LL  +  + + + ++     SA
Sbjct: 196 LRTAKEAALEASRAKSEFLANMSHELRTPISSIISGLKLLAPMEEDPQKLSILNTCKDSA 255

Query: 61  IIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSW 104
                 +                   + D    L                 +  ++    
Sbjct: 256 EALHSIINDSLDLAKIEAGKIELIPENFDLHHELAKNLNTFRPQAGTKGLDLRLQMDPGL 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARF 160
                       +IL NL   A      G        +   +      F ++  G     
Sbjct: 316 PRLVRADMHRLGQILRNLLSNAVKFTREGWVELGAEVLIKNEKSCGVNFWVQDTGIGIPK 375

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                        DG+         +       L       +     +      +  +
Sbjct: 376 DVLPRLFEAYAQADGSYSKKYGGTGLGLAITRYLVRLMGGSISVHSKEGEGSCFTLNI 433


>gi|254502633|ref|ZP_05114784.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222438704|gb|EEE45383.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 597

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 21/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRL 55
           + K     + +  L AL  + + + H+   P+ A+ +  E    L E     E ++ I  
Sbjct: 345 LRKTQTELVQAGKLAALGQMSAALSHEFNQPLAAVKSYAENALKLLERQRTSETLENISR 404

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-----------VDKRVQVSW 104
            S          +    +       +    + Q++ D I                 +   
Sbjct: 405 ISEMTDRMASISKHLRNFARRPMEKVRPVALVQIVNDAIGILQPRLRGSGAKLNFSKPDE 464

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPE 162
               +       ++++NL   A  ++     V I +  Q   +  + S++  G      E
Sbjct: 465 EIWVMGGHIRLQQVVVNLLTNALDAMKEQQPVQIDIALQTDADTCVLSVRDYGAGVSEDE 524

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +Q+ D    +    +   +       +  +    L     D+   + +  L
Sbjct: 525 -MSQVFDPFFTTKQPGEGMGLGLSISYNIVKDFGGALRVSNHDEGGAIFAIEL 576


>gi|307154620|ref|YP_003890004.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306984848|gb|ADN16729.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 708

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 81/241 (33%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +        ++++  L S I HD+ + +  I    +LL            +++++I +++
Sbjct: 329 EAKRLQNQRLEIIGALSSGISHDLNNILTPILGMAQLLVRNLSHLDETTQQMLKIIEINA 388

Query: 58  MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                 LK + +           +     + +I Q++++       ++     +   ++ 
Sbjct: 389 QRGAGLLKQILMFSRGVKGRNSILLVSSLILEIRQMLQEIFPKTIIIEQDIMPDIWAING 448

Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKING 155
           +     ++L+NL + A  ++P GGK+TI+ ++                    + S+   G
Sbjct: 449 DITQLHQMLMNLCLNARDAMPDGGKLTIAAKNFMIDQAYSNIEPEAKIGPYVVISVLDTG 508

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 E   +I +    +        +    V+ +   +   +               L
Sbjct: 509 MGI-PSEMKERIFEPFFTNKEIGKGTGLGLSIVMNIVKNHGGFIKVLSEVGKGSHFKIFL 567

Query: 214 E 214
            
Sbjct: 568 P 568


>gi|189912856|ref|YP_001964745.1| Sensor histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|189913181|ref|YP_001964410.1| Histidine kinase sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167777532|gb|ABZ95832.1| Sensor histidine kinase [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781249|gb|ABZ99546.1| Histidine kinase sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 774

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 60/237 (25%), Gaps = 29/237 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRL 55
            +     L          S + H++ SP+  I   LE                ++++I  
Sbjct: 539 ERKEQERLQHE-----FISNVSHELRSPMTNIRGYLEFFKSDSSLPFNKEHINMLEVIDK 593

Query: 56  SSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           ++      ++ +                     V  +  +  +   +     ++  + + 
Sbjct: 594 NAKRLSFLIENLLKLTTSREKDNEAEVIEIFDPVPVIEDVIHMNSHLAKGKPIEWDLTLK 653

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +  E ++I+ NL++ A     +G       + +       ++  G       K
Sbjct: 654 KGLLIRGIRFEFSQIITNLYVNALKYTFKGKIGISLREFNGK-VEIIVEDTGIGIDPNYK 712

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            I    +    V  L  +    +  E         +    K
Sbjct: 713 NQIFDRFFRIPSTDNKKIGGTGLGLSIVKSLVEKMSGEIFVESSMGEGSKFTIYFPK 769


>gi|218780361|ref|YP_002431679.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
            AK-01]
 gi|218761745|gb|ACL04211.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
            AK-01]
          Length = 1357

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 66/248 (26%), Gaps = 35/248 (14%)

Query: 1    MAKNIC------FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIE 46
            M K              M+ +  L   I HD  + +  I    ELL E            
Sbjct: 965  MEKERESLIAQLQRAQKMESIGNLAGGIAHDFNNLLSPIVGMSELLLEDLPPDSLEYENA 1024

Query: 47   DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             E+    + +S      L F R +      V     L ++ ++    I  D ++      
Sbjct: 1025 QEIFTAGKRASDLVNQILAFSRQSEHKKIPVLVQKILREVLKLSRSTIPADIQISQDIMP 1084

Query: 107  EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENI 148
            +   +  +     ++++N    A+ ++ + G                            +
Sbjct: 1085 DCGPVIADPTQIHQLVMNFITNAYHAVEKTGGEIFVQLKETKLSAEEIGSKPLGPGRYAV 1144

Query: 149  FSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              +  NG          +I +    +        +       +  E+K  +  E      
Sbjct: 1145 LVISDNGEGINPA-ILDKIFEPYFTTKELGKGTGLGLAVAYGIIKEHKGDISVESELGSG 1203

Query: 207  VVLSALLE 214
               +  L 
Sbjct: 1204 TAFTIHLP 1211


>gi|197119218|ref|YP_002139645.1| PAS/PAS domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088578|gb|ACH39849.1| sensor histidine kinase, PAS and PAS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 545

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 65/230 (28%), Gaps = 19/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
           A+     L++ +L A     + HD+  P+ AI+   ++L E    G++ +  + +R    
Sbjct: 316 ARACEMELANEELEAF-SYTVSHDLRRPLTAINGFSQVLLELYGPGMDPQCREYVREILN 374

Query: 59  ---SAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEK 108
                   +  +      +        +           ++       +  + V      
Sbjct: 375 GSIRMNHLIDTLINFSRRSVGESVREEVEITGLVEELYAELKRAEPQRNVSLLVQPGVRG 434

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARF---PEK 163
           +  +     +L NL   A     +     I+     ++    + ++ NG           
Sbjct: 435 VADAHLLRVVLDNLLGNAWKYSAKKELSEIAFGTIDHQGKTAYFVRDNGAGFDMALGDLL 494

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           F      +     +   I    V  +   +  ++  E            L
Sbjct: 495 FKPFQRLHDARDFEGTGIGLASVQRIIQRHGGQIWAESEPGKGATFYFTL 544


>gi|119492448|ref|ZP_01623769.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119453114|gb|EAW34283.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 1027

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 66/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           + +      ++    +   + + H++ +P+ AI    +L+           + ++++  S
Sbjct: 551 LKQAKEAADAANKAKSEFLANMSHELRTPLNAILGFTQLMQRDVSLKADHQQYIKIVNKS 610

Query: 57  SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               +  +  +                       L  L  + ++      +  R ++   
Sbjct: 611 GEHLLGLINDVLELSKIEAGRTTLNETEFDLYQLLCSLETLLKLKAQAKNLSLRFEIDSQ 670

Query: 106 GEKIDLSRER--AKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARF 160
                 + E    ++L+NL   A     +G    +V     +  N  IF+++  G     
Sbjct: 671 VPPFIKNDENKLRQVLINLLGNAIKFTNKGNVTLRVINQELEQLNTLIFAVEDTGPGIPP 730

Query: 161 PEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E                + +   +              ++  E         S  L 
Sbjct: 731 EEVQDLFKAFKQTKTGRESQEGTGLGLRISQNFVQMMGGKITIESEVGKGSCFSFALP 788


>gi|86156964|ref|YP_463749.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773475|gb|ABC80312.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 247

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 66/205 (32%), Gaps = 10/205 (4%)

Query: 20  SRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAII-RLKFMRLAFGYTG 75
           + + H++ +P+ A+   ++L           E ++ +  +          ++  A G   
Sbjct: 39  ATLAHELKNPLTAVKALVQLGLGNPREAASHERLEHVARAVERMERILRDYLASARGMAE 98

Query: 76  SVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
              + + +G +       +         R+            R   + L+NL      + 
Sbjct: 99  LAPARVEVGPLVSGVLQGLSARASEARVRLVTHGDATVEADPRRLEEALVNLVANGIEAT 158

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
           P GG+V + V  S       ++  G     P+   ++      +    + +   +V  + 
Sbjct: 159 PPGGEVEVEVLSSAEGAELVVRDTGTGI-APDALQRLGTPFFSTRSGGNGLGVAHVRSVI 217

Query: 191 HENKIRLLPEIIDDHNVVLSALLEK 215
             +   L  E       V+ A L +
Sbjct: 218 AMHGGSLQYESEPGKGTVVRATLPR 242


>gi|254228337|ref|ZP_04921764.1| response regulator receiver domain protein [Vibrio sp. Ex25]
 gi|151939143|gb|EDN57974.1| response regulator receiver domain protein [Vibrio sp. Ex25]
          Length = 1059

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 63/238 (26%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 390 EKAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTPLTATQRDYVDTIETSSQ 449

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105
           + L  +     ++     ++ +      + + I                 V   +  +  
Sbjct: 450 LLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIISPKAKEKGIDVQVSISRNTP 509

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161
              +       +I++N    A     +G       T  +++ +    FS+K +G      
Sbjct: 510 YHVMLDDHRIRQIIMNFMSNAVKFTEQGCVELSVITREIKNGEASIEFSVKDSGIGIDEQ 569

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   +I                   +       L       +  E            L
Sbjct: 570 Q-QKKIFAPFAQEDNSTTRQFGGTGLGLAISTQLVELMGGEIQLESEKGKGSRFFFEL 626


>gi|167898529|ref|ZP_02485930.1| sensory box histidine kinase [Burkholderia pseudomallei 7894]
          Length = 709

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 468 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 524

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 525 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 584

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 585 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 643

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 644 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 695


>gi|30260729|ref|NP_843106.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47777831|ref|YP_017195.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183567|ref|YP_026819.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|65317996|ref|ZP_00390955.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|170708223|ref|ZP_02898669.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|229602071|ref|YP_002865174.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|30254097|gb|AAP24592.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47551536|gb|AAT29670.2| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177494|gb|AAT52870.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|170126879|gb|EDS95760.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|229266479|gb|ACQ48116.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 416

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 194 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 253

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V +    +       ++++
Sbjct: 254 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEYDISFMGDRERIHQMMV 313

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 314 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 373

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 374 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 412


>gi|320161666|ref|YP_004174891.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319995520|dbj|BAJ64291.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 478

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGY- 73
           + + HD+ +P+ AI    + + +   +          +I   +      +  +     + 
Sbjct: 246 ANVSHDLKTPLTAIQGFAQAILDGTAQSPETLRNAATVIYNEASRMYRLVLDLLTLARFD 305

Query: 74  -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123
                     VD    L +  +           +          L  +     + L NL 
Sbjct: 306 AGTADLVFEKVDPQDLLRETVRRFSPLAQKAGVILRLEDASLPVLFADGERLMQALANLM 365

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS-- 178
             A    P GG + +  +  +   +  ++  G      E    F +   GN   + D   
Sbjct: 366 DNALKYTPAGGTIVLRGKVEEGHLLLEVQDTGKGISPEEQTRIFERFYRGNPSRSQDGEQ 425

Query: 179 -HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +   +            + +L 
Sbjct: 426 SSGLGLPIVREILRAHGGEVRLYSEVGKGSCFTLVLP 462


>gi|295681521|ref|YP_003610095.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
 gi|295441416|gb|ADG20584.1| multi-sensor hybrid histidine kinase [Burkholderia sp. CCGE1002]
          Length = 942

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 51/233 (21%), Gaps = 23/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
           AK      +     +   + + H++ +P+  I    ++L  +  ++   +  + +   S 
Sbjct: 469 AKERADAANQAK--SEFLAHMSHELRTPLNGILGYAQILKRDTTLDQHQLDGLTVIQRSG 526

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLG----------------DIEQVIEDFIAVDKRVQVSW 104
              L  +             + L                    +  E  +     +    
Sbjct: 527 EHLLTLIDDILDIAKIEAGRMELNLSDVPLEQFVSFIAETIRVKATEKGLDFVCEMPPDL 586

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       + LLNL   A     +G               F ++  G         
Sbjct: 587 PACVRVDEIRLRQALLNLLSNAIRFTEKGSVRLRVAFLPPARLCFEVRDTGIGIDQGRLE 646

Query: 165 TQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +         +       L       +  E   D     S  L
Sbjct: 647 EIFSPFEQVSDDRHRFGGTGLGLAISRQLVRLMGGEIHVESRRDIGSAFSLEL 699


>gi|227551075|ref|ZP_03981124.1| histidine kinase [Enterococcus faecium TX1330]
 gi|293378617|ref|ZP_06624777.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecium PC4.1]
 gi|227179773|gb|EEI60745.1| histidine kinase [Enterococcus faecium TX1330]
 gi|292642748|gb|EFF60898.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecium PC4.1]
          Length = 347

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K+    +  ++    L     S + H+  +P+  I   ++LL    + DE  Q+    
Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQSPNLSDEERQIFLYR 170

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
            + +I +L  +         +++     + ++   D    +  V +    EK  L  +  
Sbjct: 171 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 230

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                         ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQVNGQIHIKLFETATEIVLEVTDSGVGMNEET 290

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 346


>gi|189500689|ref|YP_001960159.1| histidine kinase [Chlorobium phaeobacteroides BS1]
 gi|189496130|gb|ACE04678.1| histidine kinase [Chlorobium phaeobacteroides BS1]
          Length = 671

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 67/238 (28%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
           KN      S +   +   + I H++ +P+ A+    ELL     +         L   + 
Sbjct: 274 KNARIEAESANKAKSEFLANISHELRTPLHAVIGMTELLIETTLDKDQRYYSDTLYSSAQ 333

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------------RVQVSWT 105
           M  ++    +  +    G +D    + ++ Q+++D IA+ K             +  +  
Sbjct: 334 MLLMLINDILDFSRIEAGRIDEDKEVFNLRQLLQDIIAIMKEKASCKGLVLASDIDENIP 393

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFP 161
                      ++LLNL   A     RG                    S++  G      
Sbjct: 394 SVISGYPGYIKQVLLNLIQNAIKFTYRGQVTVTVTVVSETPQDVSLKVSVQDTGIGI-PE 452

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E+   I +                 +    V  L       +     +      S  L
Sbjct: 453 EQQHLIFNPFTQIDASSTRKEGGTGLGLAIVRKLIAFMGGEIQVTSSERDGSTFSFTL 510


>gi|218896332|ref|YP_002444743.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218542783|gb|ACK95177.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 466

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGAQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQKGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   E   D    +   L
Sbjct: 424 GLGLAIVKQIVHIHGGQWKIESEKDKGTTVIIKL 457


>gi|153869210|ref|ZP_01998873.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152074257|gb|EDN71132.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 1134

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 65/245 (26%), Gaps = 31/245 (12%)

Query: 1   MAKN---ICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           M K    +    + ++L +       + + H++ +P+ ++    +LL      +   + I
Sbjct: 418 MQKTQVALETKANELELASRYKSEFLANMSHELRTPLNSLLILAQLLANNKPGNLTDKQI 477

Query: 54  RLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             +                 + L+    G V+       +  ++E      + +      
Sbjct: 478 EYAKTIHSAGADLLTLINDILDLSKVEAGQVEIHANDISLTNLLETIEQKFRPIAEQQEL 537

Query: 107 EK------------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
                             +   +IL NL   A     +G    I  +   +   FS+   
Sbjct: 538 NFQITIAEESLTTLYTDGQRLKQILNNLLSNAFKFTQQGNIKLIVQKSEADFISFSVSDT 597

Query: 155 GNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      ++          DG+ +       +        A      +     +      
Sbjct: 598 GIGIPQEKQNIIFEAFQQVDGSNQRRYGGTGLGLSISRQFARLLGGEITLHSEEGKGSTF 657

Query: 210 SALLE 214
           +  L 
Sbjct: 658 TFSLP 662


>gi|149916863|ref|ZP_01905364.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149822141|gb|EDM81532.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 719

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 77/243 (31%), Gaps = 31/243 (12%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQL 52
            + +   L     M+ V LL S + HD  + +  I  + +LL      +   + + V++ 
Sbjct: 337 QRQLEVQLRHSQKMESVGLLASGVAHDFNNILMGIMGAADLLTATSEGNTRELAETVVEG 396

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              ++      L F R       +VD    + D  +++E  +     +Q         + 
Sbjct: 397 AETAASLIQRLLDFSRKGQRVERAVDVHAVIRDTARLLERAVERRVEIQCRLEASSHTVR 456

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTIS----------------VQDSKNENIFSLKI 153
            +  ++   L      +  ++P GG +                   +  +      S++ 
Sbjct: 457 GDAHQLQSALLNLGVNSRDAMPEGGTLRFQTRTVVVGEAGLATRTGMLAAGAYLEISVED 516

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      +  T+I +    +  +     +    V     +++  +  E         + 
Sbjct: 517 TGEGM-DGDTATKIFEPFFTTKAEGKGTGLGLAAVHGAISDHRGGIEVESQPGVGTRFAL 575

Query: 212 LLE 214
           LL 
Sbjct: 576 LLP 578


>gi|119493836|ref|ZP_01624403.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119452428|gb|EAW33617.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 635

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 60/248 (24%), Gaps = 38/248 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53
           + K    NL    L +   S I H+  +P+  I  S E L+       E   +    ++ 
Sbjct: 377 LQKEKELNL----LKSRFVSMISHEFRTPLTTIMASTEALEYYGHRWTEDKKDKYFSRIR 432

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSL------------------------IGLGDIEQV 89
                   +    + +       +                             L      
Sbjct: 433 VTIQHLTDLLNDVLIIGQSEAHKLPYNPTVIDLDSFCENLVEEIQITANKKCNLTLSIHG 492

Query: 90  IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
                 ++           I   R    I +NL   A    P+GGK+ + +     + + 
Sbjct: 493 KNILNYLELAASQDSKILPISDERLLRHIFINLLSNAVKYSPKGGKIEMKLFYQATQVVV 552

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           ++K  G      ++       +    +       +    V          +         
Sbjct: 553 TIKDEGIGIPVEDQKHLFESFHRARNVGTISGTGLGLAIVKRSVDRLGGTITVHSEVGKG 612

Query: 207 VVLSALLE 214
            + +  L 
Sbjct: 613 TIFTVALP 620


>gi|78187032|ref|YP_375075.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78166934|gb|ABB24032.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 817

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 61/228 (26%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M + +  +   ++LV  L   I HD  + +      +E+L +   E           +  
Sbjct: 443 MQEQLNQS-QKLELVGQLAGGIAHDYNNMLAITLGHVEMLLDQVPESHPFFNGLKAILNS 501

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              S       L F R        V     + +   ++   +                +S
Sbjct: 502 TERSVAITSQLLAFARKQTVQPAVVRLNALVEECLPMLRGAMGESIACVWHPGPAINSIS 561

Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQI 167
            +     +ILL L + A  ++   G +TI+     +    + ++   G            
Sbjct: 562 IDPGQFDQILLILCLNARDAIKENGTITINAGESTTPGYAVLTVSDTGIGINERHLPHIF 621

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +     +    V  +  ++   +            +    
Sbjct: 622 EPFFTTKEVGKGTGLGLSTVYGIVKQHNGHVACSSEQGKGTTFTLSFP 669


>gi|16330789|ref|NP_441517.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
 gi|1653282|dbj|BAA18197.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
          Length = 750

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 71/245 (28%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDLVALLCS----RICHDIISPIGAIHNSLELLDEVGI----------ED 47
            K +   L +     LL S     I H++ +P+ +I      L               + 
Sbjct: 362 TKELRDTLMAAQAANLLKSQFINNISHELRTPLTSIIGLSATLLRWFDHPASLPPAKQQY 421

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQ 101
            ++ +              ++L+   +G          +  + +  I       + +++ 
Sbjct: 422 YLLNIQENGKKLLDQINSIIQLSQLESGQTALNCQSFSLHTLAQTVIHSLLGVAIKQQIN 481

Query: 102 VSWTGEKIDLSRERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
           +    +      +         +IL  L   A    P  G V + +    N+ IF ++  
Sbjct: 482 LELDYQINVGQDQFCADQERLDQILTQLLNNALKFTPAEGTVILRIWKESNQAIFQVEDT 541

Query: 155 GNLARFPEKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      +        ++   +  S  ++  +       L   +   +  E       + 
Sbjct: 542 GIGINEQQLPVLFEAFKVAGDSYTSFYETGGVGLALTKQLVELHGGYIEVESSPGQGTIF 601

Query: 210 SALLE 214
           + ++ 
Sbjct: 602 TTVIP 606


>gi|284007852|emb|CBA73750.1| two-component system, OmpR family, sensor histidine kinase KdpD
           [Arsenophonus nasoniae]
          Length = 899

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 61/230 (26%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           A++   +     L   L + + HD+ +P+  I    E+L      E     E +  IR  
Sbjct: 656 AESAKLDAEREQLRNSLLAALSHDLRTPLTVIFGQTEILMLELSAEHSPHTEKVNQIRQQ 715

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGE 107
            +S    +  +                 +  Q         +     +   ++ V     
Sbjct: 716 ILSTSRLVNNLLDMARIQSGGIVPTLAWESLQEIIGSALRSLEYALKSHPTKINVPAELL 775

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
               +    ++++NL   A         + I            +   G      +    F
Sbjct: 776 LYCDANLLERVIINLLENAIKYSAENSPIGIDAYPQGKYIHIEIWDKGIGIPEGQEKLIF 835

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      ES+I    +       +   +   +  E   +       +L 
Sbjct: 836 DKFSRAKKESSIPGVGLGLAICQAIIKLHNGEIWAENNKNSGATFHFVLP 885


>gi|254562963|ref|YP_003070058.1| hybrid histidine kinase [Methylobacterium extorquens DM4]
 gi|254270241|emb|CAX26235.1| putative hybrid histidine kinase: Domains: GAF, Histidine Kinase,
           ATPase and CheY-like [Methylobacterium extorquens DM4]
          Length = 691

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 70/240 (29%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53
           A+++      ++++  L   + HD  + +  I +S +LL    + ++             
Sbjct: 306 AQDVLRQSQKLEVIGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLAEDRRTRYIEAISNTV 365

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++      L F R          +   +  + +++         V          ++ 
Sbjct: 366 DRAAKLTGQLLAFARRQTLKPKVFAACDSVRSLSEMLGTLTGSRITVVTELPANACFVNA 425

Query: 114 ERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNL 157
           + ++    L+N+ + A  ++              +   V             S+   G+ 
Sbjct: 426 DPSQFDTALVNMAVNARDAMEGEGQLTIRVEPVEQMPSVRAHPAVQGPFVAVSISDTGSG 485

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +I +    +        +    V   A ++   ++ E         +  L +
Sbjct: 486 I-AKDVVERIFEPFFTTKAVGQGTGLGLSQVFGFAKQSHGEVVVESEVGRGTTFTLYLPR 544


>gi|253578664|ref|ZP_04855935.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849607|gb|EES77566.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 955

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 66/222 (29%), Gaps = 28/222 (12%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            + HDI +PI  I   L +L++ G + E  +        +   L  +         ++S 
Sbjct: 584 NMSHDIRTPINGIMGMLTILEKSGNDGERAKDCLNKINESSKLLLSLVNDVLDMAKLESD 643

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWT-----------------GEKIDLSRERAKILLNLF 123
             +   E +  D +  +    +S+                        +    KIL+NLF
Sbjct: 644 TVVFSDESINLDQVCQEITESLSFQAEEKGLHVIGEHDDYSGIYVWSNAVHLKKILMNLF 703

Query: 124 MVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFTQIVDGN------V 172
             +       G + +S++  +         F +K NG          ++           
Sbjct: 704 TNSMKYNKVNGFIYMSMRTIERSEDHMTCEFKIKDNGIGMSEEFIKNELFTPFVQADNSP 763

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S  +   +    V  L  +    +  E         + +L 
Sbjct: 764 RSDYNGTGLGMPIVKQLVEKMGGTITVESKLGEGSCFTVILP 805


>gi|149919272|ref|ZP_01907755.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase [Plesiocystis pacifica SIR-1]
 gi|149819986|gb|EDM79408.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase [Plesiocystis pacifica SIR-1]
          Length = 1898

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 63/230 (27%), Gaps = 26/230 (11%)

Query: 10   SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
                L +L  L S + H+I +P+  I N  EL+    ++ GI  E  + I   +      
Sbjct: 1668 QQQRLESLGTLASGVAHEINNPVQGILNYSELIHVNVEDAGIVREFTEEITAEANRVAAI 1727

Query: 64   LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTGEKIDLSRE 114
            ++ +                 D        +            + V      +     ++
Sbjct: 1728 VRNLLSFSRQDTDQQFEPATVDAIYSATLMLIKSVLRRDQVTIELVLPHDLPQVRCRIQQ 1787

Query: 115  RAKILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLARFPEKFTQ 166
              +I++NL   A  +L          +  +        +     ++ +G      E    
Sbjct: 1788 IQQIVMNLVTNARDALNEVYPGYDERKRIELKAERLGEDRVRMIVEDSGPGI-PAEVLPH 1846

Query: 167  IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I D    +        +       +A ++   L  +            L 
Sbjct: 1847 IFDPFFTTKGRDQGTGLGLSVSHGIAKDHGGELSVDTAPGAGTRFYLDLP 1896


>gi|145593183|ref|YP_001157480.1| integral membrane sensor signal transduction histidine kinase
           [Salinispora tropica CNB-440]
 gi|145302520|gb|ABP53102.1| integral membrane sensor signal transduction histidine kinase
           [Salinispora tropica CNB-440]
          Length = 369

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 65/215 (30%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIR-----------L 64
           L + + H++ +P+  I   LE  ++     ++++  ++R  +                  
Sbjct: 148 LLADLGHELRTPLATIEAYLEAAEDGVAVDDEDLQSVLRAQTDRLHRLADDIAAVSRAET 207

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
             + L    T   D +               V  R  +  + +     +   ++L NL  
Sbjct: 208 HQLDLHPVRTAPGDLVRDAVAAAWPRYAGKGVTLRSDLRPSPQVDVDPQRMGQVLGNLLD 267

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTID--SH 179
            A    P GG VT+ V         ++   G        P  F +    +          
Sbjct: 268 NALRHTPEGGTVTVHVIGGARSVELAVADTGPGIPAQHLPHIFERFYRVDTARDRGNGGS 327

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I    V  +   +  R+  E +     ++  +L 
Sbjct: 328 GIGLAIVRAVVSAHGGRVRAENVPGGGAMVKVVLP 362


>gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1159

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 67/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54
           +      +L     L   L +   H++ +PI  I    E +     D    + + + LI 
Sbjct: 473 LTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQDLTEGQQKQLGLII 532

Query: 55  LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S+      +  +             +   V S   +  +  + +  +       V  + 
Sbjct: 533 KSADGLARLVDDLLDYHQMRYGQLEIHPQPVSSKGVIRLVLDLCQHLVQAKPLTLVDISP 592

Query: 107 EKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
            ++       +   ++L NL   A    P+ GKV +S     N     +   G       
Sbjct: 593 VELPPVLADEQRLEQVLYNLVGNAIKYTPQ-GKVVLSALVEGNFLRIKVTDTGIGIAPDH 651

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F  +V  + E +     +       L H     L  E         +  L 
Sbjct: 652 LEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLP 706


>gi|114324578|gb|ABI63596.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1223

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 621 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 680

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 681 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 740

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155
                 +  S    +I+LNL   A                             F++   G
Sbjct: 741 KVPDYVVGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTG 800

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 801 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFY 860

Query: 211 AL 212
             
Sbjct: 861 FT 862


>gi|83717440|ref|YP_439204.1| sensory box histidine kinase [Burkholderia thailandensis E264]
 gi|83651265|gb|ABC35329.1| sensory box histidine kinase [Burkholderia thailandensis E264]
          Length = 812

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 578 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 634

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 635 ATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQITHDRLPIVH 694

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++    K  I+          +  +F ++ NG     P+ F +I
Sbjct: 695 GIAAQLVLLFQNLIGNAIKFRSKERIARIHLEADTRDDAWVFRVRDNGIGI-DPQYFERI 753

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 754 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIAVESEPGRGTTFSFALSR 805


>gi|87308035|ref|ZP_01090177.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87289117|gb|EAQ81009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 661

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 58/242 (23%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRI--------CHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K   F L      A    R+         H++ +P+ AI    E++++  +  E ++ +
Sbjct: 254 RKEAEFALQRAKRAAESAVRVKSEFLTNMSHELRTPLAAILGYSEIMEDHAVTSESLEAV 313

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------- 104
                +    L+ +     ++      + +  +     +F+                   
Sbjct: 314 DTIRRNGQHLLELIGDILEFSRIESGKLEVSAMPTPAYEFLKSTFESFRELADDKGLRFV 373

Query: 105 -------TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                      I       +IL  L   A      G           N    +++  G  
Sbjct: 374 VDVSDQIPEMIITDPVCVRQILWRLVTNAVKFTDAGEIGVAVRVADGN-LELNVRDTGCG 432

Query: 158 ARFPEK-----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                        +  D +     D   +       L+      +            +  
Sbjct: 433 IPAEMLSSIYQPFRQADNSSTRRHDGAGLGLAICQKLSQMLGGDISVRSQAGAGSQFTVR 492

Query: 213 LE 214
           L 
Sbjct: 493 LP 494


>gi|85111598|ref|XP_964013.1| hypothetical protein NCU02057 [Neurospora crassa OR74A]
 gi|28925771|gb|EAA34777.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 1319

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 61/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  N      +  L +   + + H+I +PI  +    ELL +V ++ E  +L      SA
Sbjct: 714 LLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVELDAEQRELTENIFRSA 773

Query: 61  IIRLKFMRLAFGYTG------------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102
              L  +     ++                     +    L    +        +    +
Sbjct: 774 NALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVGKMLSFTAERKSLAFNYEICSDI 833

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLA 158
                 +       +I+ NL   +      G        + + +      F ++  G   
Sbjct: 834 GIDLVVMGDPGRVRQIITNLATNSIKFTHEGHVKLHVSVEQETDDTIEVKFVIQDTGIGI 893

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E   ++                   +       L    K R+      D     +  
Sbjct: 894 -EEEVLKRLFQPFSQGDPSTARKFGGTGLGLTISKNLLELMKGRMALASKKDEGTTATFW 952

Query: 213 LE 214
           + 
Sbjct: 953 IP 954


>gi|332764275|gb|EGJ94511.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-671]
          Length = 321

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 99  ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 158

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 159 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 218

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 219 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 277

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 278 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 312


>gi|292489907|ref|YP_003532797.1| protein histidine kinase/phosphatase sensor for OmpR [Erwinia
           amylovora CFBP1430]
 gi|292900944|ref|YP_003540313.1| osmolarity sensor two-component sensor kinase [Erwinia amylovora
           ATCC 49946]
 gi|291200792|emb|CBJ47926.1| osmolarity sensor two-component sensor kinase [Erwinia amylovora
           ATCC 49946]
 gi|291555344|emb|CBA23705.1| protein histidine kinase/phosphatase sensor for OmpR [Erwinia
           amylovora CFBP1430]
 gi|312174091|emb|CBX82344.1| protein histidine kinase/phosphatase sensor for OmpR [Erwinia
           amylovora ATCC BAA-2158]
          Length = 449

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 59/205 (28%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMAEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +   +              + + N+ + A      
Sbjct: 295 QFERADLNGVLGEVVAAESGYEREIENAVLPGELLLDINPLAIKRAIANMVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G           F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGSELQ--RVWFQVEDDGPGIEPDQLQHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 IDAHYGTLEIGKSEKGGLRIRAYLP 437


>gi|271499735|ref|YP_003332760.1| Osmosensitive K channel His kinase sensor [Dickeya dadantii Ech586]
 gi|270343290|gb|ACZ76055.1| Osmosensitive K channel His kinase sensor [Dickeya dadantii Ech586]
          Length = 909

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            +N   +     L   L + + HD+ +P+  +    E+L      E          IR  
Sbjct: 660 TENARLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLNLASEGSPYAPQASQIRQH 719

Query: 57  SMSAIIRLKFMRLA-FGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKI 109
            +S    +  +       +   +       +E++    +           + +    + I
Sbjct: 720 ILSTTRLVNNLLDMARIQSDGFNLRKEWQTLEELTGSALRQLENSLASNTIHLRLPQDMI 779

Query: 110 DLSRE---RAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +  +     ++L+NL   A                IS   S +     ++ NG      
Sbjct: 780 LVYCDASLIERVLINLLENAIKYAGEQATITLSASRISSSASGDVLEVQIQDNGPGIPIG 839

Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +   G+ ES+I    +       +   +  ++     D+   V    L 
Sbjct: 840 QEKIIFDKFARGHKESSIPGVGLGLAICRAIVEIHGGKIWATNADEGGAVFHFTLP 895


>gi|229198128|ref|ZP_04324837.1| hypothetical protein bcere0001_36580 [Bacillus cereus m1293]
 gi|228585288|gb|EEK43397.1| hypothetical protein bcere0001_36580 [Bacillus cereus m1293]
          Length = 424

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDETIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|261417885|ref|YP_003251567.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|319767303|ref|YP_004132804.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
 gi|261374342|gb|ACX77085.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC61]
 gi|317112169|gb|ADU94661.1| multi-sensor signal transduction histidine kinase [Geobacillus sp.
           Y412MC52]
          Length = 597

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 60/236 (25%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 359 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAASEEEKKEMAKVIYD 414

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVS 103
                       L   R+  G+                 +     + ++           
Sbjct: 415 ESLRMGRLVNDLLDLARMEAGHIELEYEQVKLVPYIERVIRKFYGLAKEKQIELTAEFRD 474

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              E         ++L NL   A      GG V + ++ S +     ++ +G+     + 
Sbjct: 475 RDIEIALDPDRIEQVLTNLIDNAIRHTESGGTVRLIIEPSGDGVTIHVQDSGSGIPEEDL 534

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +     +     +       +   +K  +      +     S  L 
Sbjct: 535 PFVFERFYKADKARTRSRSGTGLGLAIAKNIVEAHKGLITVHSKLNEGTTFSFYLP 590


>gi|209523365|ref|ZP_03271920.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
 gi|209496107|gb|EDZ96407.1| multi-sensor signal transduction histidine kinase [Arthrospira maxima
            CS-328]
          Length = 1010

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
            A+NI    +   +     S + H++ +P+ AI  SL LL     + +  +  +       
Sbjct: 767  AQNISERRAVEQMKNEFISVVSHELRTPLTAIQGSLGLLSSGLYDHKPQEFHKFIQIALL 826

Query: 58   --MSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------- 106
                 +      + +    +G V+  +     + ++   +   + +    +         
Sbjct: 827  ETERLVRLVNDILDIERLNSGQVEFQMEACSAQDLMTQVVKSLQAIAHQDSITLEILPTS 886

Query: 107  -EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +         + L NL   A    P    VT+S     +  +F ++  G      +  T
Sbjct: 887  LQLWAERDAMLQTLTNLVGNAIKFSPPHTTVTLSAYPQDDMVLFQVRDQGRGIPPEQLET 946

Query: 166  QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +         +       +  ++  ++  E            + 
Sbjct: 947  IFSRFQQVDASDSRQKGGTGLGLSICQSIIQQHGGKIWVESQLAKGSTFYFTIP 1000


>gi|153873278|ref|ZP_02001912.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152070256|gb|EDN68088.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 617

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 60/236 (25%), Gaps = 33/236 (13%)

Query: 10  SSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            S  +        +   + + H++ +P+ AI    E+L E   +      +         
Sbjct: 107 QSQKIAEEANYAKSHFLANMSHELRTPLNAIIGYSEMLQEDAEDLNQESCVLDLKKIQGA 166

Query: 63  RLKFMRLAFGYTGSVD------------------SLIGLGDIEQVIEDFIAVDKRVQVSW 104
               + L                               +  I+ ++E    V K V    
Sbjct: 167 GKHLLGLINTVLDLSKIEAGRMELYIETFELNPVLNEIVSTIQPLVEKKANVLKTVFDDN 226

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            G+      +  ++LLNL         + G++ + V+       F +  NG      E+ 
Sbjct: 227 LGQMHTDLTKLRQMLLNLLSNTAKFTEQ-GQIRMEVRRDGEWINFCIADNGIGM-TEEQQ 284

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I                   +        +      +  E       +    L 
Sbjct: 285 KKIFQPFTQADASTTRRYGGTGLGLAITKQFSEMMGGVIWVESEFGQGSIFMMSLP 340


>gi|159901418|ref|YP_001547665.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894457|gb|ABX07537.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 557

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 62/225 (27%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR------ 63
           ++  + + H++ +P+ AI    +LL               ++ IRL+    +        
Sbjct: 309 SMFVATMSHELRTPLNAILGYTQLLHLGAKARGQEDVLPQLERIRLAGKHLLTLVSNVLD 368

Query: 64  -----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                   M L  G       +  +  I Q + +        + + T        +  +I
Sbjct: 369 FSKIEHGKMNLDLGDVQLASLVDEVMGIVQPLAEARFDQLTTEFASTSLIYSDGGKIRQI 428

Query: 119 LLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN---- 171
           L NL   A           +V    +  +   IF++   G      +   ++        
Sbjct: 429 LFNLLSNAIKFTEAGTVTLRVWDEQRAGEPWLIFAVSDTGIGMAPDQLR-RLFKPFVQAD 487

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                T     +       LA      +  E   +     +  + 
Sbjct: 488 ESTTRTYGGTGLGLALSQQLAAMLGGSISVESCPNVGSTFTLQIP 532


>gi|301163674|emb|CBW23228.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 638R]
          Length = 1015

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L+S          L +   + + H+I +P+ AI     +L     E+E  + +
Sbjct: 633 RKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYV 692

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105
            +   +    L  +         +++         +  +         +           
Sbjct: 693 SII-ENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQL 751

Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                             +++++NL   A     +G            E  F +   G  
Sbjct: 752 EFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSQGSIRFGYEHR-GKELYFYVTDTGCG 810

Query: 158 ARFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +K   I    V   S      +       L       +  +  +         L 
Sbjct: 811 I-PKDKQESIFGRFVKLNSFAQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 868


>gi|291563053|emb|CBL41869.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase [butyrate-producing
           bacterium SS3/4]
          Length = 356

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 67/236 (28%), Gaps = 22/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGI 45
            + +   +    + A L   + HDI +P+ +I  S                LELL+++  
Sbjct: 113 QEQMRLEVEREKMRANLLRAVSHDIRTPLTSIVGSASGIIDNYDALSKENILELLEDMKS 172

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           E + +  +  + +S                 V+ +I     +                  
Sbjct: 173 EGQWLVRMVENLLSITRIGDGTARINKEDELVEDVISGAITKFRKRFPDIEVVPKVPEDV 232

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +    ++++NL            K+ + V +  ++  FS++ +G   +      
Sbjct: 233 LFVPMDAILIEQVIVNLLENCVLHADGMTKIWLIVTEDGDQVKFSVEDDGAGIKESVLPR 292

Query: 166 QIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                             +  I     + +   +   +  E   +    +   L K
Sbjct: 293 MFDGSFESEDGKESDSRRNMGIGLSVCMTIVRAHDGIMKAENRKEGGARVMFWLPK 348


>gi|262366468|gb|ACY63025.1| sensor protein KdpD [Yersinia pestis D182038]
          Length = 800

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 541 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 600

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 601 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALYMLETTLSQHQIRVELP 660

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I  +         +  NG      +
Sbjct: 661 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVQGEWLNVDVWDNGPGVTIGQ 720

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 721 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 775


>gi|258510525|ref|YP_003183959.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257477251|gb|ACV57570.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 533

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 11/217 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMS 59
               +  +A + + I H+I +P+ AI  SLE +         E+    + +  +      
Sbjct: 278 RADKISAIAEMAAGIAHEIRNPLAAIRWSLEAMALRFPEAKKELCAMTDELARVDSIVGE 337

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKI 118
            ++  K   + F     VD L  +  + Q       V  +V +       +       ++
Sbjct: 338 LLVLAKPADVQFEAVRVVDVLEVVCLLLQSQARKQKVKIQVVIQDHDLTVLGQPSHLKQL 397

Query: 119 LLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
            LNL   A  ++  GG+        + +  I S+  +G     PE   ++ +    +  +
Sbjct: 398 FLNLMKNALEAMRTGGELEIDIRNSNDDYVIVSMVDDGPGI-PPEVLPRLGEPFFTTKPN 456

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +  ++   L       H   +   L 
Sbjct: 457 GTGLGLMTCHKIVRDHGGSLHIANRKPHGTHVEVRLP 493


>gi|254415755|ref|ZP_05029513.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196177461|gb|EDX72467.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 379

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 52/222 (23%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMR------- 68
           L S + H++ +P+  +   LE L    +     + Q +   +      +  ++       
Sbjct: 156 LVSDLTHELRTPLTVLRGYLEELATQRMDATPAMYQQLAKETRRLERLINDLQELSKAEA 215

Query: 69  -LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----RERAKILLNLF 123
                    V+    L  + Q   D +  +         EK+           ++L+NL 
Sbjct: 216 GYLPIKVEPVNVRPLLESLVQKFTDQVLEEGPALQLDCPEKLPRVLADSDRLEQVLMNLL 275

Query: 124 MVAHASLPRGGKVTISVQDSK------NENIFSLKINGNLARFPE---KFTQIVDGNVES 174
             A      G        +             ++   G      +    F +        
Sbjct: 276 GNAIRHTQTGKITVRVWVERHGIKGIIPRLWIAVTDTGMGIAPEDLPHVFERFWRAEKSR 335

Query: 175 --TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   I       L       +  E            L 
Sbjct: 336 NPHTGGTGIGLAISKRLVELQGGEIEVESQLGIGSTFRFYLP 377


>gi|149374705|ref|ZP_01892479.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149361408|gb|EDM49858.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 962

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 27/236 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               L +  + +   + + H+I +P+  I    ELL +  +  +    +     S+ I L
Sbjct: 282 RKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLPRQQRDHLSTIRKSSEILL 341

Query: 65  KFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK 108
             +     ++                   + ++  ++              V        
Sbjct: 342 TIINDILDFSKIEAGKLILDRIPFQLRDIVEEVMVMLAPAAHSKNLDLVPLVYNDVPDNI 401

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPE 162
           +       +++ NL   A      G             + ++     S+  +G      +
Sbjct: 402 MGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEEEDKESNRITLRLSITDSGVGLSRAQ 461

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           + +     +              +       L  E   ++  E            L
Sbjct: 462 QQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517


>gi|119468956|ref|ZP_01611981.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7]
 gi|119447608|gb|EAW28875.1| hypothetical protein ATW7_04312 [Alteromonadales bacterium TW-7]
          Length = 886

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 60/238 (25%), Gaps = 28/238 (11%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M   +   ++  +    L     + + H+I +P+ AI    E L          Q +   
Sbjct: 391 MNSQLELAITQAEQANQLKSRFLANMSHEIRTPLTAIMGFTEQLLHNDKIVNDKQHLSTI 450

Query: 57  SMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             ++                  + + +       V  +  +  I   +     ++  +  
Sbjct: 451 LRNSKHLLELINNILDLSKIEAEKLAVEQASVNVVQLVHDIESIITPLAQEKRLELNIIF 510

Query: 103 SWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLAR 159
                +   +      +IL+N+   A     +G         +K+    F +   G    
Sbjct: 511 DLPIPQTIYTDVTRLKQILINVANNAVKFTEQGHVSICVHYHAKSNLIEFVITDTGIGMS 570

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             +   ++                   +       LA+     +  E         S 
Sbjct: 571 EHQIS-RVFKPFEQADATTTRRFGGTGLGLCISKNLANLLGGDIKLESEVGEGSEFSI 627


>gi|219847198|ref|YP_002461631.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
 gi|219541457|gb|ACL23195.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
           9485]
          Length = 870

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 61/244 (25%), Gaps = 33/244 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           +        ++ + LL   I HD  + +  I     L       +  +Q          +
Sbjct: 480 ETQMLQAQKLESLGLLAGGIAHDFNNLLTGIMGHTSLALLDLHPNHELQPHLVAIDQAAQ 539

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109
            ++      L +         +V+    + ++  ++         V + +         +
Sbjct: 540 RAAELCSQLLAYAGRGQRSLEAVNLSTLVREMGGILHLPNHRSGHVTIHYDLATDLPSVV 599

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI-------------------SVQDSKNENIFS 150
             + +  +++LNL   A  ++   G                                  +
Sbjct: 600 VEASQIRQVVLNLLTNAIEAIGDRGGSVTLRTGVVTLSATDLRRLNLTPTIPPGRYVTLT 659

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +   G          +I D    +    H +    V  +   +   +  E         +
Sbjct: 660 VSDTGVGMDEV-TMRRIFDPFFSTKPKGHGLGLAAVQGIVRRHHGAIKVESTPGLGSSFT 718

Query: 211 ALLE 214
             L 
Sbjct: 719 IYLP 722


>gi|115372373|ref|ZP_01459682.1| putative sensory histidine kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115370586|gb|EAU69512.1| putative sensory histidine kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 855

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 57/240 (23%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQL 52
            +       ++ L     S   H++ +P+  +  ++ELL              +   ++ 
Sbjct: 609 EQTQKELREAITLRDQFLSMASHELRTPLTPLKATVELLLRQSDENQVLPLERQRSTLER 668

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVS 103
           +R         +  M       G   ++                ++          +Q+ 
Sbjct: 669 LRRQVDRLTRLVSDMLDMARIQGGRLAMRRASMDLTALAREVADRIQHSSRERSAPIQLE 728

Query: 104 WTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                   +   +   ++L NL   A    P    + + +  + +  +  +K  G     
Sbjct: 729 LPEGPLLGVWDEQRLDQLLTNLIENAARYSPPDAPIQVCIGSTADRALIEVKDQGIGVPA 788

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
               +                    +       +   +   +             S  L 
Sbjct: 789 ESLPSLFTPFYRARNAAQHYAGGLGLGLAICREIVERHGGTIQASSAGPGQGTRFSVSLP 848


>gi|39995918|ref|NP_951869.1| nitrogen regulation protein NtrY [Geobacter sulfurreducens PCA]
 gi|39982682|gb|AAR34142.1| nitrogen regulation protein NtrY, putative [Geobacter
           sulfurreducens PCA]
 gi|298504932|gb|ADI83655.1| nitrogen regulation sensor histidine kinase NtrY, HAMP and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 748

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 68/230 (29%), Gaps = 20/230 (8%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
           ++   + +  + A   +  RI H+I +P+  I  S + L +         +    +   +
Sbjct: 517 DMTQLIKAQRMAAWREVARRIAHEIKNPLTPIQLSAQRLRKRYLPRFGDEDRVFDECTAM 576

Query: 56  SSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
              S             F R+   +    D    + +   +  +          +     
Sbjct: 577 IVKSVDELKTLVDEFSNFARMPAAHPSPNDLNAVIREAVTLFREGHRGVAFGFSADDRLP 636

Query: 109 --IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKF 164
                  +  ++ +NL   A A++   G+V I  +        + ++   G     PE  
Sbjct: 637 LLQLDRDQIKRVFINLLDNAVAAMGGTGEVRIMSRFDPELKMAVVTVADTGPGI-PPEDK 695

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T++ +    +      +    V  +  ++   +     +         L 
Sbjct: 696 TRVFEPYFSTKASGTGLGLAIVSSIITDHHGFIRVRDNEPRGTKFVIELP 745


>gi|323499018|ref|ZP_08103998.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
 gi|323315853|gb|EGA68884.1| signal transduction histidine kinase [Vibrio sinaloensis DSM 21326]
          Length = 570

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 17/246 (6%), Positives = 63/246 (25%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           + + +      + L            +   + + H++ +P+ A+   +++L     ++  
Sbjct: 185 LQQLVDIKTQQLKLAQVKAEKANEAKSRFLAMMSHELRTPLSAVLGYIDVLLADLKQENQ 244

Query: 50  MQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93
           ++++     SA +                    ++  +    +    +            
Sbjct: 245 LEILEKMESSAELLLVLINDILELSRIESGEFPIKYQWVRLNTELKFVLEHFYALADAKG 304

Query: 94  IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
           +     ++   +           +I+ NL   A       G+V ++        + ++K 
Sbjct: 305 LKFSVNIEFDESLSLWIDPARVMQIVFNLVGNALKFT-HAGEVCLTANVINQHLVITVKD 363

Query: 154 NGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G             +      ++  +     +       L       +  +        
Sbjct: 364 TGIGIDKDRLDIVFSEFKQADDSITRSYGGTGLGLTISKHLVGLMSGNISVKSKLGQGST 423

Query: 209 LSALLE 214
               L 
Sbjct: 424 FRIELP 429


>gi|258593669|emb|CBE70010.1| putative Histidine kinase [NC10 bacterium 'Dutch sediment']
          Length = 764

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58
           ++       ++ V LL   I HD  + +  I    EL          E   +  +     
Sbjct: 372 EDRFRQAQKLEAVGLLAGGIAHDFNNHLSGIIGFAELALGGIPPDSKEYRHLSRVPKIGR 431

Query: 59  SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A   +     F R A      +D    L +   V+   +     +++    E + ++ +
Sbjct: 432 QAADLVGQVLSFARKAPLQRKPLDLDPLLQETMSVLRRTLPETIAIELEPAREPLVVNAD 491

Query: 115 RAKILLNLFM---VAHASLPRGGKVT---------------ISVQDSKNENIFSLKINGN 156
            A++   L      A  ++P GG +T                  +        ++   G 
Sbjct: 492 GAQVQQILLNLATNARDAMPYGGTLTLRLTPVTLIEASLGGYPERRLGAFACLTIADTGT 551

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +        +    V  +A +++  +  E  +         L 
Sbjct: 552 GIPAA-IRDRIFEPFFTTKEAGHGTGLGLASVYGIAQQHEGWIEVETAEGQGSAFHVFLP 610


>gi|288561543|ref|YP_003428949.1| sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288548175|gb|ADC52057.1| sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 470

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 56/217 (25%), Gaps = 23/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRL----- 69
           + I H++ +P+  +    E+L E        +++ + ++   +      +  +       
Sbjct: 243 ASISHELKTPVSYLMGYSEVLKEKLYQTEEEKEQYLSILEHEATRLNYLISDLFDLSKME 302

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKILLNL 122
                    +    +    L     +      +   V+V           +   ++  NL
Sbjct: 303 EGKFDINKEWIDLTELADNLDMKYSLKAKEKDLLFTVKVDENLSLFYGDGKRIEQVFTNL 362

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTID 177
              A      G  VT   +   N+    +K  G+     E                    
Sbjct: 363 LDNAMRHTTNGE-VTCEFRQGDNQINIIIKDTGSGIPADELPFIFDRFYRVEKSRSREFG 421

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V +L   +   +     ++     +    
Sbjct: 422 GTGLGLAIVKMLVKLHGGTIDITSKENEGTQFTLSFP 458


>gi|317152778|ref|YP_004120826.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943029|gb|ADU62080.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 879

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 73/241 (30%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIE---DEVMQLIRLSSM 58
               L S  + A+  L   I HD  + + +I NS EL L +V  +      ++ +  ++ 
Sbjct: 500 EKQLLQSQKMEAIGTLAGGIAHDFNNILTSIINSTELALGDVEPDSVTRRDLERVLKAAR 559

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDL 111
                +K +      +        +G +      F+       ++            +  
Sbjct: 560 RGGRVVKQILAFSRPSTEGFRSTDVGAVVSEALGFLEASMPSNIAVRSLVAPSLSCVLAD 619

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQ---------------DSKNENIFSLKINGN 156
             +  ++ +NLF  A  +L   G V  +                 +       +++ NG 
Sbjct: 620 PTQLHQVAMNLFTNAFHALREQGGVIEARVEQVLLDEDEAGVIGLNHGWHVRLTIEDNGP 679

Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   +I D    +    +   +    V  +   +K  L          V    L 
Sbjct: 680 GI-PPEIVDKIFDPFFSTKDKTEGTGLGLAVVHGIVRSHKGGLQVSPRIGGGTVFEVYLP 738

Query: 215 K 215
           +
Sbjct: 739 R 739


>gi|269836401|ref|YP_003318629.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
 gi|269785664|gb|ACZ37807.1| PAS/PAC sensor signal transduction histidine kinase [Sphaerobacter
           thermophilus DSM 20745]
          Length = 598

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 61/217 (28%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
             + + H++ +PI ++   +E L     ++  +  E +  +          ++ +     
Sbjct: 364 FVANVSHELRTPIASLKALVETLLDGALEDEEVAHEFLARMETEVDGLARLVQDLLELSR 423

Query: 70  --------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILL 120
                   +            +    +   +   +D R+++               ++L+
Sbjct: 424 AESGRLTLSPVAADIRRVAEQVIARLRTQAEPKKLDIRIEIPDGLTPGRFDPERIEQVLV 483

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177
           NL   A    P GG +T+      +  +  +   G      +    F +    +      
Sbjct: 484 NLVHNAVKFTPPGGIITVGAAAEDDHLVVWVADTGPGVAPEDRDRIFERFYKTDRSRADA 543

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L   +  R+  +        +   L 
Sbjct: 544 GTGLGLSIARHLVELHGGRIWVDGTARPGTTIKFTLP 580


>gi|257062966|ref|YP_003142638.1| histidine kinase [Slackia heliotrinireducens DSM 20476]
 gi|256790619|gb|ACV21289.1| histidine kinase [Slackia heliotrinireducens DSM 20476]
          Length = 340

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 63/223 (28%), Gaps = 19/223 (8%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----SSMSAIIRLKF 66
                    S + H++ +P+ AI  + E L +  +  ++ +         +         
Sbjct: 115 QQKRQTQFISDVAHELRTPLTAIRGNAETLADPDMPQDLRERFTHTIVSEAERLTRLTND 174

Query: 67  MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRER-A 116
           +          +         +         +       +  ++V      +  + +R  
Sbjct: 175 LLTLQHIEDGSEQQALQRVNLRTIATDVADVLETLVEDRNGTIEVVGEAPDVLGNPDRLQ 234

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVE 173
           + + NL   A   +  GG + I ++   ++ I S+  +G      +    F++   G+  
Sbjct: 235 QAIYNLVANACRFIGDGGHIVIRLEGVDDKTIVSVIDDGPGFGDTDPNMLFSRFYRGDNS 294

Query: 174 S--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  +   +   +    +          L 
Sbjct: 295 RARNTGGTGLGLAIVKSVVEAHDGTVQAFNVASGGACFMIALP 337


>gi|300777605|ref|ZP_07087463.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
 gi|300503115|gb|EFK34255.1| virulence sensor histidine kinase EvgS [Chryseobacterium gleum ATCC
           35910]
          Length = 735

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 66/248 (26%), Gaps = 36/248 (14%)

Query: 3   KNICFNLSSMDLV---ALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
           K     +S +D+    AL+ +         + H+I +P+  I     LL +  +++   +
Sbjct: 216 KRQRLLISELDIAEKKALVAAQTKENFLANMSHEIRTPLSGILGFTNLLQKRPLDETSAE 275

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------------- 95
            +     S    +  +      +     ++ +      I   +                 
Sbjct: 276 FVSSIQRSGENLMAIINDILDLSKIEAGMMRITPGIFSINGLVNSVETFFTERAKEKGLT 335

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSL 151
           +   ++ S     +  +    +IL+NL   A     +G       +    + +    F +
Sbjct: 336 ISSTIEPSIPDTLVGDATRLTQILVNLIGNAIKFTHQGNITVEIYSKQQTEKEAVLGFKI 395

Query: 152 KINGNLARFP---EKFTQIVDG--NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G         E F +   G  +         +    V  L       +         
Sbjct: 396 SDTGIGIDKEKLTEIFERFNQGEDSTTRNYGGTGLGLSIVKSLILLQNGNIEVSSEPGKG 455

Query: 207 VVLSALLE 214
                 + 
Sbjct: 456 TTFHFYIP 463


>gi|218887072|ref|YP_002436393.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758026|gb|ACL08925.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1058

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 52/239 (21%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK +    S         + + H+I +P+  I   L+LL     +      +  ++ S  
Sbjct: 604 AKEVAEAASRTK--GEFLANMSHEIRTPLNGIMGMLQLLQTDPPKAMRTVYVGAATQSCR 661

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105
                +      +      + L D        +                     V     
Sbjct: 662 RLGLLLGDILDLSRIEAGKLELHDEPFEARAVLDEVRGLFEGPAAERGLTLRVSVDERIP 721

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARF 160
                 +    ++L NL   A     +           + +      +F+++  G     
Sbjct: 722 RHLRGDAMRLRQVLFNLVGNAVKFTDQGEVVVEAWRVQASRSRGCRVVFTVRDTGIGIAE 781

Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                    +    V  L       +  E         S  L 
Sbjct: 782 ERLKDIFEPFVQAETASTRRYQGAGLGLPIVRRLVRLMCGTVTVESTPGAGTAFSVSLP 840


>gi|160887727|ref|ZP_02068730.1| hypothetical protein BACUNI_00128 [Bacteroides uniformis ATCC 8492]
 gi|156862758|gb|EDO56189.1| hypothetical protein BACUNI_00128 [Bacteroides uniformis ATCC 8492]
          Length = 479

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL   
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDKRVGVLNDEQEQLSNS 301

Query: 56  SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              +A                    +++    T  ++ +       QV  D   +   V+
Sbjct: 302 IKENADRLLGITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVE 361

Query: 102 VSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       S + A +L NL   A       G+V I  +  ++     ++  G    
Sbjct: 362 YPEEKMPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKHDEDFVEMYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  +            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSELGKGSRFVIRLK 478


>gi|153002705|ref|YP_001368386.1| osmolarity sensor protein [Shewanella baltica OS185]
 gi|151367323|gb|ABS10323.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS185]
          Length = 438

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  ++  ++D ++  I     
Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R     +  +  +  L       E   A +  V ++   E    +    ++
Sbjct: 280 IISQFIAYIRQDQETSRELGQINKLIQDVAQAEANRAGEIEVVLTDCPEAQFQAVAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS Q       F+++ NG     P+    F     G++   
Sbjct: 340 LSNLVENAFRYGS--GWIRISSQFDGKRIGFTVEDNGPGIDEPQITKLFQPFTQGDIARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   ++ ++      +  ++    L 
Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQVTLSNRAEGGLIAQVWLP 436


>gi|187927855|ref|YP_001898342.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
 gi|187724745|gb|ACD25910.1| multi-sensor hybrid histidine kinase [Ralstonia pickettii 12J]
          Length = 818

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 60/239 (25%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     + S    A+  + I H+I +P+  I  SLELL    +  +       +  ++  
Sbjct: 311 RARVAAVRSEREKAMFLAFISHEIRTPMHTILASLELLQRSQLTGQQASRADAAVSASET 370

Query: 63  RLKFMRLAFGYTGSVDS------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L  +     Y+                       ++ V          + +        
Sbjct: 371 LLALLDDVLEYSRLESRSVTLVLQPTAIGPWAEQALDMVRWRSDEKKLALSLDLACAPDF 430

Query: 111 ----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARF- 160
                +    +I+LNL + A      G  V                +  ++  G      
Sbjct: 431 SVDIDAMRVRQIVLNLLVNAIKFTTVGKVVLRVDYLPGKRRGSGTLVLEVRDTGMGIPPE 490

Query: 161 -----PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 E + ++             +       L       +      +   V + +L 
Sbjct: 491 RQRNIFEPYARVESPG-NRGASGTGLGLSICHELVELMGGVITVSSSPEVGTVFTVMLP 548


>gi|189423669|ref|YP_001950846.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419928|gb|ACD94326.1| PAS/PAC sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 957

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 57/225 (25%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           +   + + H+I +P+  +   ++LL    +  E  + ++    SA               
Sbjct: 581 SEFLANMSHEIRTPMNGVIGMVQLLQFTRLNSEQQEYLQCLETSAQNLLSLLNDILDLSK 640

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  +  A          +    I Q+ +  + +   +                +IL
Sbjct: 641 IEAGKISLEYADFSLRHSIQEVVTTQISQIHQKRLKLTTSLADDIPEILHGDPLRLKQIL 700

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDGN---- 171
           LNL   A      G     +    +         S+   G     PE   +I        
Sbjct: 701 LNLLGNAIKFTAAGSITIAARITDQQNGTLTICLSVSDTGIGM-TPEALQRIFAPFEQAD 759

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       LA     R+  E  D H       L 
Sbjct: 760 NSTTRRFGGTGLGLTICRRLAELMGGRIWAESSDGHGSSFFVELP 804


>gi|114319836|ref|YP_741519.1| two-component sensor kinase CbrA [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226230|gb|ABI56029.1| Two-component sensor kinase CbrA [Alkalilimnicola ehrlichii MLHE-1]
          Length = 975

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 74/227 (32%), Gaps = 19/227 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 S  L ++  L + + H+I +P+  +    + L +    + + + +         
Sbjct: 745 ERELAHSERLASIGRLAAGVAHEIGNPVTGVACLAQNLRDEDDPELIRESMEQILEQTHR 804

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------ 116
               +     Y  +  +     +  ++ +      + + +S  G++++            
Sbjct: 805 ISNIVHTLVSYAHAGSTEESPPEPVRLHDAAEEARQVMVLSRRGKEMEFDNRIPPHLEVA 864

Query: 117 -------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++ +NLF  A  +  + G++ ++ ++  +  I  +  NG          +++D
Sbjct: 865 GDSQRLVQVFVNLFSNAADACAQQGRLVLTARERGDRIIVRVADNGPGIPASALK-KVLD 923

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +        +    V  +  ++   L  E        ++  L 
Sbjct: 924 PFYTTKPAGQGTGLGLPLVYNIITDHGGTLDIESDVG-GTTVTLELP 969


>gi|328544516|ref|YP_004304625.1| Multi-sensor signal transduction histidine kinase [polymorphum
           gilvum SL003B-26A1]
 gi|326414258|gb|ADZ71321.1| Multi-sensor signal transduction histidine kinase [Polymorphum
           gilvum SL003B-26A1]
          Length = 787

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 65/255 (25%), Gaps = 43/255 (16%)

Query: 2   AKNICFNLSSM-DLV-----------------ALLCSRICHDIISPIGAIHNSLELLDE- 42
            + +      + +L                  +   + I H++ +P+ AI    +++D  
Sbjct: 519 RQTLEMQAQQLVELAEKYAQEKTNAENANRAKSEFLANISHELRTPLNAIIGFSDIMDRG 578

Query: 43  ---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG--------------D 85
                  +   +  R    S    L  +      +      + +                
Sbjct: 579 MFGPIGSERYAEYCRDIHESGTYLLNVINDILDMSKIEAGRMEMTVKPLGVEAVVEEAGR 638

Query: 86  IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN 145
           I +      A++   +V          R   ++LLNL        P  G V +SV  +  
Sbjct: 639 IIRAPAQEKAIEVTCEVEPGLAVAADRRALKQVLLNLLSNGVKFTPEKGTVRLSVHRAGG 698

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLP 199
              F +   G   R  +   ++             T     +       L       L  
Sbjct: 699 LARFEIADTGIGIRKADV-DRLAQPFVQVENQFTKTHKGSGLGLAIARSLVELQGGTLTI 757

Query: 200 EIIDDHNVVLSALLE 214
             +      ++  L 
Sbjct: 758 ASVPGQGTRVAFTLP 772


>gi|283853644|ref|ZP_06370878.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283570977|gb|EFC19003.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 490

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 70/225 (31%), Gaps = 16/225 (7%)

Query: 5   ICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60
           +   L  S  L A+  L   I H+I +P+ AI      LL    +     +   +    +
Sbjct: 257 LERRLQKSERLAAIGELSMFISHEIRNPLFAIAGFANALLRAKDLGLASREKASIILSES 316

Query: 61  IIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                 ++    +     S+                +     A    + ++ + +     
Sbjct: 317 KRLDAILKDIINFARPTSSVPGEVNVNDVAARTTALMRHGLEAQHITLTLALSPDTPMAR 376

Query: 113 RER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +     + LLN    +  ++P GG++T++    +     S+  +G     P+   Q+ +
Sbjct: 377 GDPETLTQCLLNCLKNSMEAMPGGGRITVATGLRQGRVFLSVADDGPGI-APDILPQVFN 435

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +       +  +    +  E    H   ++  L 
Sbjct: 436 PFFTTRDKRAGLGLAMTKKILEDLGGAVDLESPPGHGATVTLFLP 480


>gi|281208514|gb|EFA82690.1| histidine kinase [Polysphondylium pallidum PN500]
          Length = 1105

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 59/241 (24%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +  L +   + I H++ +P   I    +LL + G+             S  
Sbjct: 535 RQAEESAIKATKLKSQFIANISHELRTPCHGILGMTQLLLDSGLTPNQRDSAETIKRSID 594

Query: 62  IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW------ 104
             +  +     ++              + +  + ++  +  +         +        
Sbjct: 595 GLINLINDILDFSKIEAGKLTLEIVEFELISIVEEVLNLQGELANKKGIDLIFIIGRQSP 654

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLAR 159
                   SR   ++L+NL   A      G  V     + ++       FS+K  G    
Sbjct: 655 VPPMLYGDSRFIRQVLINLVHNALKFTESGHVVLEISTEYESGDQVSLRFSVKDTGIGIP 714

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 Q+                   +       L       +  E            L
Sbjct: 715 DS-VSEQLFQPFSQVDGSSSRKYGGTGLGLSICRDLVGLMGGNISYESKVGKGSCFWFSL 773

Query: 214 E 214
           +
Sbjct: 774 K 774


>gi|255020498|ref|ZP_05292562.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970018|gb|EET27516.1| Osmosensitive K+ channel histidine kinase KdpD [Acidithiobacillus
           caldus ATCC 51756]
          Length = 927

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 62/234 (26%), Gaps = 20/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
                 +L    + + L S + HD+ +P+  I  SL  L+       E   +  +  +  
Sbjct: 684 RSEADLHLQLERMQSALLSAVSHDLRTPLTTILGSLGTLERLHGTLPEAEQQQLIRDIRT 743

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------ 108
            +   +    + +R+A   +G  +       +  ++       +                
Sbjct: 744 ETERMSQTMERILRVAALLSGGAELHKEWVPLTDILGSARRERQSPCADRPFNVQIPADL 803

Query: 109 ---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
                      ++L NL   A    P G  V I    +  E    +  +G         E
Sbjct: 804 PLLHGDPTLLTQVLGNLIENACRYTPPGTAVDIQAWANPQEIFVCVIDHGYGIPPGRERE 863

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
            F +              +       +   +  R+       +        L +
Sbjct: 864 IFERFSRVKPPVGTGGSGLGLAIAQSVLQMHGGRIWASNQVMNRGAKFCFSLPR 917


>gi|221234053|ref|YP_002516489.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
 gi|220963225|gb|ACL94581.1| histidine protein kinase DivJ [Caulobacter crescentus NA1000]
          Length = 600

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 64/235 (27%), Gaps = 27/235 (11%)

Query: 6   CFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
              + +  L A      + + H++ +P+ AI    +++       + D   +   L   S
Sbjct: 320 QARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHES 379

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------VQVSW 104
               L  +      +        L        + +    R               V    
Sbjct: 380 GGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPG 439

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             E     R   +I+LNL   A    PRGG+VT++           +   G      +  
Sbjct: 440 ELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDL- 498

Query: 165 TQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++     +            +    V   A  +   ++ E        +S  L 
Sbjct: 499 ERLGRPYEQAGGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLP 553


>gi|215433463|gb|ACJ66697.1| sensor histidine kinase [Myxococcus fulvus HW-1]
          Length = 466

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 64/231 (27%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVMQ 51
           +     +  +  V  L + + H++ +P+ A+ NS   L            +     + + 
Sbjct: 229 QEHLIRVEKLAAVGQLAASVGHELRNPLAAVRNSHAYLSRKLTKDPAGAADDPRVPQFLG 288

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTG 106
           L+     +    +  +               L  +       +   + V++         
Sbjct: 289 LMERELNACAKIISDLLDFARERPPALQPCPLRPLVDEAIGVVPQREGVRIVNGVPESLP 348

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEK 163
                  +  ++L+NL   A  ++P G    +SV             +  +G     PE 
Sbjct: 349 VPNLDKEQFRQVLVNLVQNAVEAMPVGRNGEVSVMAEGGDAQPWCIRVVDDGAGI-PPEV 407

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +    V  +   +   +      +        L 
Sbjct: 408 LPKIFEPLFTTKTRGTGLGLAIVANMVQRHGGTISVRSEAERGSEFLIELP 458


>gi|209527419|ref|ZP_03275925.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209492154|gb|EDZ92503.1| multi-sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 954

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 59/249 (23%), Gaps = 36/249 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           + K +     +  L     + + H++ +P+  I    E L +         +   + +I 
Sbjct: 557 LQKTVAELDRATRLKDEFLANMSHELRTPLNGILGMSEALKQGILGTLNPNQHHAIAMIE 616

Query: 55  LSSMSAIIRLKFMRLAFGY--------------TGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            S    +  +  +                        +S + L +     +         
Sbjct: 617 KSGKHLLELISDILDLSKIEAGKLELYLTEVSVQELCNSSLTLVNHLAFTKQINIESNIP 676

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSL 151
           Q          +R   ++L+NL   A     +             T     +     FS+
Sbjct: 677 QQLQKTFIKVDNRRLRQVLINLLSNAVKFTHKAGKINLNVGIKPSTNLAISTPQSIYFSV 736

Query: 152 KINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
             NG      +   ++                   +    V  +   +   +        
Sbjct: 737 VDNGIGIATDDL-DKLFLPFTQIDSSLNRQYSGTGLGLALVKQIIELHGGCVEVSSQLGK 795

Query: 206 NVVLSALLE 214
               +  L 
Sbjct: 796 GSCFTVYLP 804


>gi|257059372|ref|YP_003137260.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
 gi|256589538|gb|ACV00425.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8802]
          Length = 1002

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
           +      ++ +L  +   +++ H++ +P+ AI    +++  +  +  +  + + + + S 
Sbjct: 517 EEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRDSSLSSQQQEYLGIINRSG 576

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--W 104
              L                + L        + +  + ++  +      ++  V      
Sbjct: 577 EHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLELTVHQDEEL 636

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLA 158
                    +  +I++NL   A      G         +      +      +K  G   
Sbjct: 637 PKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQLEVKDTGIGI 696

Query: 159 RFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E  T               +   +        A      +  +         +  ++
Sbjct: 697 NQDELETIFEAFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLGQGSTFTCTIK 756


>gi|307152388|ref|YP_003887772.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306982616|gb|ADN14497.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1308

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 71/240 (29%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
            + K     +++    ++  + + H++ +P+ AI    +LL  +  +  E ++ +++ + S
Sbjct: 833  LQKAQKEAIAANRAKSIFLANMSHELRTPLNAILGFTQLLGRDHCLRPEHLERLQIINRS 892

Query: 60   AIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQV----S 103
                L  +      +                  + +   E +         R+ +     
Sbjct: 893  GEHLLGLIDDILDLSKIETGKIAAFLTGFDLYHLLVTVEEMLQPKAKTRGLRLIIEKSFD 952

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLAR 159
                     ++  ++L+NL   A      G  +         ++    +F ++  G    
Sbjct: 953  LPQYIKTDEKKLRQVLINLLNNAIKFTQEGTVILRVKPKAAENTPQRLVFEVEDTGVGMA 1012

Query: 160  FPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   Q+    V++           +               +  +       V S  +E
Sbjct: 1013 PDDI-DQLFKVFVQAEAGKKLNQGTGLGLAISQKFVQLMGGEIEVKSTLGKGSVFSFEIE 1071


>gi|153214295|ref|ZP_01949312.1| sensor histidine kinase [Vibrio cholerae 1587]
 gi|124115443|gb|EAY34263.1| sensor histidine kinase [Vibrio cholerae 1587]
          Length = 736

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 60/237 (25%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    ++  + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 343 LEAEKVKAQASTKAKSVFLATLSHEIRTPMNGVLGTAQILLKDELTPKQRQHLTSLYESG 402

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578


>gi|115376010|ref|ZP_01463257.1| sensory histidine protein kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115367009|gb|EAU65997.1| sensory histidine protein kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 413

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 48/240 (20%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEV 49
            +     L              S   H++ +P+  +   LE L         +       
Sbjct: 170 TREFEQLLQKEREGVKSRDEFLSIAAHELRTPLTPLKLQLETLRRSVVAAGIDDPWVMRH 229

Query: 50  MQLIRLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDK 98
           ++   +     +  +  +                        I + D  Q   +      
Sbjct: 230 LERSSVQVQRLLQLVDRLLDVSRIATGRLGLLLEDMDLSALTIEVTDRFQEEAEGAGCPL 289

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            V        +       ++L +L   A                 +      ++  G   
Sbjct: 290 EVHTPGRVRGVWDQLRLEQVLSSLISNAIKYGAGHPIDVSVEGK-EEVVRLCVQDQGIGL 348

Query: 159 RFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    F +              +  Y    +   +   +              +L K
Sbjct: 349 APEDASRIFERFERAVSPKHYGGMGLGLYVARQIIEAHGGTIAVRSQPGRGATFIVVLPK 408


>gi|53722385|ref|YP_111370.1| two-component sensor kinase protein [Burkholderia pseudomallei
           K96243]
 gi|52212799|emb|CAH38831.1| putative two-component sensor kinase protein [Burkholderia
           pseudomallei K96243]
          Length = 737

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 496 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 552

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 553 ATRMQSLIDDLLSYSRVGRLEDARRPVDCEHVLDEALRNLSAAIRESGAQVTHDPLPTVH 612

Query: 117 ----KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++         ++ +      +  +  ++ NG     P+ F +I
Sbjct: 613 GIEAQLVLLFQNLIGNAIKFRGKDRVARIHLEAHTRDDAWLLRVRDNGIGI-DPQYFERI 671

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 672 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIFVESEPGQGTTFSFTLSR 723


>gi|46578686|ref|YP_009494.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603748|ref|YP_968148.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|46448098|gb|AAS94753.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120563977|gb|ABM29721.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|311232557|gb|ADP85411.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 756

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/240 (7%), Positives = 66/240 (27%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQ 51
           +     + +  +  L  + + + H++  P+  I  +   L             +   +  
Sbjct: 512 EAEQKVIQAGKMATLGEMATGVAHELNQPLTVIKAASGFLLRKARKGEPVAPDVLSTMTA 571

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--- 108
            +      A   ++ MR     +  V   + + ++ +   +F +    V+      +   
Sbjct: 572 EMDAHVDRASRIIEHMREFGRKSDIVLERVSVNEVLRSATEFFSRQMTVRGITIEWQLDA 631

Query: 109 -----IDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFSLKINGN 156
                + ++    ++++NL + A  ++                 +    E +  +  +G 
Sbjct: 632 SEPVVMAVANRLEQVVINLLLNARDAIEEHAAAHDARRVITLRTETDGREVVMEVCDSGP 691

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +        +       L  +    +            +  + 
Sbjct: 692 GI-PRALQQRIFEPFFTTKKVGKGTGLGLSISYGLVKDFGGSISVGDAPGGGARFTVRMP 750


>gi|21673490|ref|NP_661555.1| sensor histidine kinase [Chlorobium tepidum TLS]
 gi|21646596|gb|AAM71897.1| sensor histidine kinase [Chlorobium tepidum TLS]
          Length = 399

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF------ 66
             S + H++ +P+ +I    E L     ++       + +I   +      +        
Sbjct: 176 FVSSVSHELRTPLASIKGYTETLLEGAMNDPENATAFLNIIHQEAEQLTALVNDVLDLSR 235

Query: 67  --MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRERAKILL 120
                       VD    L     + E   A                 +        ++ 
Sbjct: 236 IESGKIAYSFEPVDVKPQLEKTAALFEPAAARKGVRIELNAPEGLPAVLADRSYFDIVVR 295

Query: 121 NLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           NL   A   +     +V +S   + +     +  NG      +   +I +          
Sbjct: 296 NLIDNAIKYVDAESGRVRVSAYATGDSVSIEVADNGIGIPQADL-DRIFERFYRVDKARS 354

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +    V  +   +K ++      +     +  L 
Sbjct: 355 RELGGTGLGLSIVKHIVLAHKGKVEVRSRINRGTTFTVTLP 395


>gi|332703717|ref|ZP_08423805.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553866|gb|EGJ50910.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 697

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 71/245 (28%), Gaps = 33/245 (13%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
            K +   L     M+ +  L   I HD  + +G I    E++ E   +   ++       
Sbjct: 307 RKRLEEQLRIAQKMEAIGTLAGGIAHDFNNILGVITGYTEIILENTDKGSSLERRLKEIL 366

Query: 53  --IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGE 107
              R +       L F R       ++     + +  +++   +     ++   ++    
Sbjct: 367 GACRRAKDLINQILNFSRQGTQEKKALRVSPLIKETVKLLRTSLPASLDIRENIMTGNDT 426

Query: 108 KIDLSRERAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSL 151
            +    +  +ILLNL   A  ++                            +    + ++
Sbjct: 427 VMADPSQIHQILLNLCTNAAHAMRERGGLLEISLAEVHLDEATVSKTPGLSAGAYVVITV 486

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +G+         +I D    +    +   +    V  +  ++   +  +  +      
Sbjct: 487 TDSGHGIPKT-IQEKIFDPFFTTKKPGEGTGMGLAVVHGIVKQHNGVVYVQSEEGKGASF 545

Query: 210 SALLE 214
             LL 
Sbjct: 546 QVLLP 550


>gi|326406912|gb|ADZ63983.1| two-component system histidine sensor kinase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 517

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 15/209 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-----RLA 70
           + + H++ +P+ +I    ELL+              +I   S   +  ++       +  
Sbjct: 309 ANVSHELKTPLTSIKGFAELLETDSISSSDTKNFASIINKESSRLMNLVQDTLLLTKQNH 368

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                 ++    + +I Q     I                         I  NL   A  
Sbjct: 369 RIDKKKINLTTLIQNILQSSGPQINEKSLHLESQIEEITFKTNEPMVHSIFENLIENAIK 428

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVES-TIDSHDIQFY 184
             P  G++ +S+   +N+ IFS+  NG      +    F +    +     +    +   
Sbjct: 429 YTPANGQIFVSLHLEQNKVIFSVTDNGPGLSEIQKERIFDRFYRVDESRAEVSGTGLGLA 488

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213
            V     E    +    I       +  L
Sbjct: 489 IVEKNVQELHGTIDVVSILGKGTTFTVNL 517


>gi|321225247|gb|EFX50306.1| Aerobic respiration control sensor protein arcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
          Length = 608

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|304396312|ref|ZP_07378193.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
 gi|304355821|gb|EFM20187.1| multi-sensor hybrid histidine kinase [Pantoea sp. aB]
          Length = 777

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                Q+              +IL NL 
Sbjct: 348 KVQLDNQPLDFTGFLADLENLSGLLAQPKGLKFVLAPQLPLPHMISTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A     +G  V     +      F ++ +G   R  E+                    
Sbjct: 408 GNAVKFTQQGEIVVRVTYEQDETLRFEVQDSGMGIRQDEQDKIFAMYYQVKDQHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +            +  ++
Sbjct: 468 GTGIGLAVSRRLAQAMGGDIRVHSAPGQGSCFTVEIK 504


>gi|299537508|ref|ZP_07050802.1| putative sensor-like histidine kinase yclK [Lysinibacillus
           fusiformis ZC1]
 gi|298727069|gb|EFI67650.1| putative sensor-like histidine kinase yclK [Lysinibacillus
           fusiformis ZC1]
          Length = 453

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 63/232 (27%), Gaps = 20/232 (8%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
           +++   L  ++ +     S + H++ SP+ +I      L +       +   + +I   +
Sbjct: 218 EDMAEELQQLEQMRRDFVSNVSHEVQSPLTSISGYALALKQVDVTDDEKRRYLDIIISEA 277

Query: 58  MSAIIRLKFMRLAFG-----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GE 107
                    +              +D+      I +VI           + +        
Sbjct: 278 NRMSKMSDSLLKLSLLESKTQPMLLDTFSLDEQIRRVIVSLQPQWSSRNIDFELQLKAVR 337

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +    +  ++  N+   +         + IS++ S N     +   G      ++    
Sbjct: 338 LMADYDQLHQVWTNILTNSIKFSNANATIEISMKQSANHVTVRITDRGIGISLEDQQRIF 397

Query: 168 VDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         D   +    V  +   ++  +  E    H   +   L 
Sbjct: 398 ERFFKADRSHSHKYDGSGMGLALVKQIVSLHRGEIEVESELRHGTTMIVRLP 449


>gi|297582756|ref|YP_003698536.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
 gi|297141213|gb|ADH97970.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus
           selenitireducens MLS10]
          Length = 679

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 58/232 (25%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIRLSSM 58
                      AL  + + I H+I +P+ +I   +EL+       +  +     +    +
Sbjct: 433 RNKVFEQEKNQALSRVVAGIAHEIRNPLSSIKTFVELIPRKINNQKFQEEIATYVPKEIV 492

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDL 111
                ++ +             +  G +            +       +           
Sbjct: 493 RVSELIEGLINYARPRHQEPEAVDAGILMHESFILFERTGKNKGMTLELNQEEGLWIEVD 552

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLARFPEK 163
            ++  + ++NL +    ++                           S+   G      E 
Sbjct: 553 PQQVKQAVINLIINGLDAMEARKNTEGGGTMTLTLAVFEQDGCVHLSVTDEGIGMADDEL 612

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++++    +      +       L  +N   LL          ++ +  K
Sbjct: 613 -AKVLEPFYTTKDKGSGLGLAISSQLVKDNGGELLIVSEKGTGTTMTLVFPK 663


>gi|291546163|emb|CBL19271.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 336

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 65/233 (27%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLI 53
            N    +  ++    L     S + H+  +PI AI     LL +  +     +++ +  I
Sbjct: 104 SNFNLMVQELEATEILQTDFVSNVSHEFKTPISAIEGYATLLQDDDMPISEEQEQYINKI 163

Query: 54  RLSSMSAIIR----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             ++                             +D  I    +    +      +     
Sbjct: 164 LFNTRRLSHLAGNILLLSKIEHQSIQTRQNWYRLDEQIRQSIVMMEPKWSEKEIEFDVDM 223

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---F 160
              E +        +  NL   A    P GG + I +     +  FS++  G        
Sbjct: 224 MDVEYLGNENLICHVWDNLLSNAIKFSPCGGTIYIRMMPEGEKIRFSIENEGPQISEYSM 283

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              F +   G+     + + +    V  + +     +  E I       + +L
Sbjct: 284 KHIFDKFYQGDSSHKQEGNGLGLALVKQILNLCMGTVSVENIPGSGCRFTVIL 336


>gi|238910122|ref|ZP_04653959.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|168463446|ref|ZP_02697363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195633140|gb|EDX51554.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|167994521|ref|ZP_02575612.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205327619|gb|EDZ14383.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261248493|emb|CBG26330.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995527|gb|ACY90412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159877|emb|CBW19396.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|323131688|gb|ADX19118.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|332990186|gb|AEF09169.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|197265807|ref|ZP_03165881.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197244062|gb|EDY26682.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
          Length = 778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|218780746|ref|YP_002432064.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
 gi|218762130|gb|ACL04596.1| histidine kinase [Desulfatibacillum alkenivorans AK-01]
          Length = 485

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 69/262 (26%), Gaps = 49/262 (18%)

Query: 2   AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEV---------- 43
            +     +  + L         +   S + H++ +P+ AI    ++L E           
Sbjct: 207 EEEQSQRVHRLRLALEHAKRAKSDFLSSVSHELRTPLNAILGFSQVLQEEYFGGLNTKQK 266

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDK 98
              +++++  +         L   R+  G        + +  I +     + E       
Sbjct: 267 QYVNDILESGKHLLDLINDILDLSRVESGEMKLEVEPLLISFILESSLHLIREKAFKHGI 326

Query: 99  RVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRGGKVT---------------I 138
            + V  + E  ++       +  +IL NL   A    P  G +                 
Sbjct: 327 EITVDVSDEIREMAILADHTKLKQILFNLLSNAAKFTPDKGAICVGARVIHDPVDGGGSQ 386

Query: 139 SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHEN 193
            + D+       ++ +G      +K     D                +       L   +
Sbjct: 387 DLDDNPGWIEVFVRDSGIGIEGDDKKRVFDDFYQVSAGLSGKTPGTGLGLPLAKRLVELH 446

Query: 194 KIRLLPEIIDDH-NVVLSALLE 214
             R+  E    H        L 
Sbjct: 447 GGRIWVESEGRHQGSCFVFTLP 468


>gi|161616338|ref|YP_001590303.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168243164|ref|ZP_02668096.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262659|ref|ZP_02684632.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194451313|ref|YP_002047357.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|200387522|ref|ZP_03214134.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|161365702|gb|ABX69470.1| hypothetical protein SPAB_04147 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409617|gb|ACF69836.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|199604620|gb|EDZ03165.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|205337795|gb|EDZ24559.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348428|gb|EDZ35059.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|16766623|ref|NP_462238.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16421886|gb|AAL22197.1| sensory histidine kinase in two-component regulatory system with
           ArcA [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|312914355|dbj|BAJ38329.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
          Length = 778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|116750101|ref|YP_846788.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699165|gb|ABK18353.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 339

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 72/226 (31%), Gaps = 14/226 (6%)

Query: 2   AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSM 58
            +     L +  L A+    S + HD+ +P+ AI    +LL +     D  ++ + +   
Sbjct: 110 RREQKRALEAGRLAAIGKAISCVAHDMKTPLIAIGGFGQLLMKHFETGDPRLEKLEIIVK 169

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED----------FIAVDKRVQVSWTGEK 108
                   +R    ++  ++      D+  ++ +             V      +     
Sbjct: 170 ETRRLEMMVREMLDFSRPLELHRSEEDMCLLVRESLEVVNEAATAKRVIVFSTPANPPRI 229

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L+NL + A  + P G  VT++        +  +   G+     +    I 
Sbjct: 230 SVDPLRIKQVLINLMINAVEASPEGEIVTVATYKQGRNLVIDVSDKGDGIPDGKAEE-IF 288

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  D   +       +   ++ RL         +++  +L 
Sbjct: 289 SPFYTTKKDGTGLGLTIARKIVEAHEGRLELLQNSGKGLIVRVILP 334


>gi|332702127|ref|ZP_08422215.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552276|gb|EGJ49320.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 485

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 72/221 (32%), Gaps = 17/221 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + ++  + S I H+I +P+G I +S ELL         +    ++++     +   
Sbjct: 261 QSEKMASMGRMVSGIAHEIRNPLGIIRSSAELLLGKSRREDPKSSHTRILQAIFDESKRL 320

Query: 64  LKFMRLAFGYTGS----------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            + +     Y                L  +    +       V+   + +     +    
Sbjct: 321 SRTVNEFLDYARPKAPRLEPVDVTQVLDQMAVFLESKLQQQEVELAREYAPGVLIMADRD 380

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
              +   NL   A  +L   GK+ ISV  +  + + +++ +G     PE   ++ D    
Sbjct: 381 LIYRAFYNLVANALEALNGPGKIRISVNAAAGQVMVNIEDSGTG-FAPETLEKLRDPFFT 439

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +    V  +   +  ++      +    +  +  
Sbjct: 440 TKDSGTGLGLTIVDTILGGHGAQMHLGNNPEGGARVEIIFP 480


>gi|327478668|gb|AEA81978.1| signal transduction histidine kinase [Pseudomonas stutzeri DSM
           4166]
          Length = 803

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 29/236 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRL 55
            +     L          S + H++ +P+ +I  +L L+      +  G   E++ + + 
Sbjct: 565 ERKRIERLQRE-----FISTVSHELRTPLTSITGALALVCSNVMGEVPGQMRELLDIAQQ 619

Query: 56  SSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +S      +  +            +      L+   ++        A    VQ+      
Sbjct: 620 NSQRLGALIDDLLDMDKLHAGKMRFDLLEQPLLPQLELALRSNGSYAERHGVQLRLGDCP 679

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    ++L NL   A    P G +V +  +        S++  G      E  
Sbjct: 680 AVQVEIDAMRLQQVLSNLLSNAAKFSPPGEQVELLARMRDGHVRVSVRDRGPGI-SDEFR 738

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                   +       L      ++  E            L 
Sbjct: 739 ERVFQKFAQADSSDSRQQGGTGLGLAISKELIEHMGGQIGFESAPGQGACFWFELP 794


>gi|319901471|ref|YP_004161199.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            helcogenes P 36-108]
 gi|319416502|gb|ADV43613.1| integral membrane sensor hybrid histidine kinase [Bacteroides
            helcogenes P 36-108]
          Length = 1345

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 67/231 (29%), Gaps = 20/231 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDE--VGIEDEVMQLIRLSS 57
            + K     +S M +   +   I H++ +P+  I   L ELL       E E +  ++ ++
Sbjct: 818  LDKEKREEISQMKIRFYV--NISHELRTPLTLIVAPLQELLSRISGHWEHEQLLYVQRNT 875

Query: 58   MSAIIRLKFMRLAFGY---TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
               +  +  +            + ++        +           +           ++
Sbjct: 876  NRLLHLVNQLMDFRRAELGIFELRAVYSNAYKRVLGCFMNYESLSKRKDIDYNFYTELQD 935

Query: 115  RAKILLNLF---------MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
               +    +           A      G  +T+ +    N+ +  +   G     PEK  
Sbjct: 936  ENVLFDENYLDLIVNNLLSNAFKYTEIGESITVKLYVEDNDLVLQVIDTGIGI-PPEKQE 994

Query: 166  QIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +   +  +      I    V  L   +  R++ +         +  L 
Sbjct: 995  KIFERFYQVENGHKGSGIGLSLVQRLVELHHGRIVLQSEVGKGSTFTINLP 1045


>gi|301166213|emb|CBW25788.1| putative histidine kinase/response regulator fusion protein
           [Bacteriovorax marinus SJ]
          Length = 936

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + + ++ +   + + H+I +P+  I     LL E   + E ++ + +   S+ 
Sbjct: 552 RERTKKLIHANEVKSNFLANMSHEIRTPLNGILGISSLLYERMEKKENIEYLNIIKRSSE 611

Query: 62  IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE--- 107
             L+ +     ++              D    L DI+ ++        ++++ W  +   
Sbjct: 612 DLLQIINDILDFSKIESDGIELESLPFDLHKELEDIKNLMISSSTSQNKIEIFWDNDLTK 671

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPE 162
                     +IL+NL   A+     G       +       +     +K NG       
Sbjct: 672 VYTSDRLRIRQILINLIGNANKFTTNGKIEITVKELSSSQEISNLQIIVKDNGIGIPATS 731

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +                      +       LA      +  E  +      +  +
Sbjct: 732 QSNIFKSFTQADISTTRRFGGTGLGLSISKALAEIFGGDITFESEEGKGTTFTFSI 787


>gi|239623925|ref|ZP_04666956.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521956|gb|EEQ61822.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 657

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 61/242 (25%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDL----VAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            +    N ++  L     AL  + S I HD+ +P+  ++N LELL +  I     +    
Sbjct: 414 QRTAQLNHANEQLEASQAALQEMISNISHDLKTPLTVLNNYLELLGDEMIASSEQERTEY 473

Query: 56  ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +    +   + +   F  T                   +    R       +K    
Sbjct: 474 LGIAYHKNLDLQRLIHNLFEVTRMEGGTAVYHPEWVSAGKLMVEADRKYGDLVRDKGITF 533

Query: 113 --------------RERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNL 157
                          +   +L NL   A    P G        +D  N     +   G  
Sbjct: 534 LARAEGMLELQLDKNKIWSVLDNLVYNALRHTPEGGSISLCISRDVDNRAALRVSDTGEG 593

Query: 158 A---RFPEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 P  F +             S  +  Y V   A      +  E       V +  
Sbjct: 594 IAAAHLPHIFERFYKVSPERGEKDGSSGLGLYIVKTTAEAMGGSVRVESTLGKGTVFTVT 653

Query: 213 LE 214
             
Sbjct: 654 FP 655


>gi|169829138|ref|YP_001699296.1| sensor protein [Lysinibacillus sphaericus C3-41]
 gi|168993626|gb|ACA41166.1| Sensor protein [Lysinibacillus sphaericus C3-41]
          Length = 895

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---LIRLSS 57
           + + +        + A L   I HD+ +P+ AI  + ++L         ++   L     
Sbjct: 659 LHEEVAREAEMEQMRANLLRAISHDLRTPLTAISGNADILLNNAPLIPDIEKNKLYEDIF 718

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--- 114
            ++   ++ +      +   D    L    +++ED I       V          +    
Sbjct: 719 NNSKWLVQMVENLLAVSRLEDGQFALEIQLELVEDIIQEALSHVVHQNSSHKISYQIEPE 778

Query: 115 ----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++ +N+   A    P G  +TI V++      FS+  NG         
Sbjct: 779 FLLSLMDARLMIQVFINIIDNALTYTPPGSDITILVKECDGLVNFSISDNGPGIDDS-LK 837

Query: 165 TQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + + +      +          +       +   +  ++          + +  L+K
Sbjct: 838 SSLFEPFTTGKVQRSDSRRGLGLGLALCQTILKLHGSQITVSDNKPQGTIFNFSLKK 894


>gi|157148781|ref|YP_001456100.1| aerobic respiration control sensor protein ArcB [Citrobacter koseri
           ATCC BAA-895]
 gi|157085986|gb|ABV15664.1| hypothetical protein CKO_04614 [Citrobacter koseri ATCC BAA-895]
          Length = 778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 55/215 (25%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLDPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDVLHFDVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +          V +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSQPGKGSVFTLT 502


>gi|94266170|ref|ZP_01289881.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93453257|gb|EAT03709.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 787

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 66/242 (27%), Gaps = 28/242 (11%)

Query: 2   AKNICFNL--SSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K I   L   S +L             + HD+  P+  +++ ++LL+    +    +  
Sbjct: 536 RKRIELALNQQSAELARSNAELEQFAYVVSHDLRQPLRMVNSYMQLLERALDDKLDDETR 595

Query: 54  RLS-------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRV 100
            +             + +  +  +         +              +  +      +V
Sbjct: 596 EMMGFAVGGAQRMDQMLVSLLEYSRVGRKGEPMVPLASRQAVDEALDFLAPETKEAGAKV 655

Query: 101 QVSWTGEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNL 157
           +VS    +I  SR+   ++  NL   A           + +          FS+  NG  
Sbjct: 656 KVSGDWPEIVASRDEFTRLWQNLIGNALKYRDPDRVCEVEISVTPEDGGWRFSVADNGIG 715

Query: 158 A--RFPEKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALL 213
              +  ++  ++          +   I       +   +  R+  E             L
Sbjct: 716 IDPQQFDRLFKVFQRLHTRDKYEGTGIGLAVARKIVERHGGRIWVESEGAGQGCRFIFTL 775

Query: 214 EK 215
            K
Sbjct: 776 PK 777


>gi|332160895|ref|YP_004297472.1| sensor protein KdpD [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665125|gb|ADZ41769.1| sensor protein KdpD [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
          Length = 899

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED---FIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I                ++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHILETTLNHHHIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I            +  NG      +
Sbjct: 769 DEMVLINCDGSLLERVFINLLENAHKYAGYDALLGIRATVQGEWLNVEVWDNGPGVTAGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +        L 
Sbjct: 829 EQLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKSQEGGASFHFTLP 883


>gi|319403897|emb|CBI77483.1| two-component sensor histidine kinase [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 769

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 63/238 (26%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +      S+    +   + I H++ +P+ AI    E++ +            + +   
Sbjct: 529 LQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDI 588

Query: 57  SMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             S    L  +      +                   +               +     +
Sbjct: 589 HNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNI 648

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     R   +I LNL   A    P GG + I      N  IFS+K  G      E
Sbjct: 649 EQKLHADVDCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGI-PQE 707

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++             T     +       L   +K +L     +    +++ ++ 
Sbjct: 708 AIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEGKGTIVTIIMP 765


>gi|312129598|ref|YP_003996938.1| histidine kinase [Leadbetterella byssophila DSM 17132]
 gi|311906144|gb|ADQ16585.1| histidine kinase [Leadbetterella byssophila DSM 17132]
          Length = 1259

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60
            K+   +L  +         I H++ +P+  I   LE LL+E  + +     + +   S+
Sbjct: 770 QKDQELHLERIRFFT----NITHELRTPLTLILGPLEDLLNEKTLCEAHKSKVSVIHKSS 825

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGL------GDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +       + +      +      +                  +  ++ + +     + +
Sbjct: 826 LRLLALINQILDFQKTQSQLRKLNLIPGDLSLAVFEIGKKYQDLNRNEEIHLELDVPEWN 885

Query: 111 LSRER-----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
                       +L NL   A     +G       +   +     +   G         +
Sbjct: 886 DKIYFDEEVLHIVLENLLSNAFKYTQKGEIRLELQKSGDSWVKIQVSDTGKGIPPASLDK 945

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +      +S +    I    V  L   +  ++            +  L 
Sbjct: 946 IFERYYQVEEDSKVSGTGIGLALVKSLVELHLGKIEVSSELGKGSSFTVYLP 997


>gi|296448198|ref|ZP_06890095.1| response regulator receiver sensor hybrid histidine kinase
           [Methylosinus trichosporium OB3b]
 gi|296254282|gb|EFH01412.1| response regulator receiver sensor hybrid histidine kinase
           [Methylosinus trichosporium OB3b]
          Length = 536

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 63/227 (27%), Gaps = 12/227 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSS 57
           + +     L +  +  +  + + HD+ +P+  I  + E    L +     + ++ IR S 
Sbjct: 152 LERQRQQLLQAERMREMFVAILGHDLRNPLQGIKTATERTMRLTQDEEARKTLESIRQSG 211

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 +  +             I         + +             RV+ S     +
Sbjct: 212 DRMARMIAQILDVTQMRAGAGLTIRRAPTELSLVVEQIVDEFSAHRRLLRVEYSGDTRGV 271

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQIV 168
             +    +++ NL   A    P GG V + V         F +   G       +     
Sbjct: 272 WDADRLLQLVSNLVGNAVEHGPPGGHVHVRVDGRAPAWVKFEVHNGGCGLPKQLRDVLFE 331

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       +  +    +   +   +  E  D+    +   L +
Sbjct: 332 PFRSGDRTRGLGLGLFICKQIVEAHGGAIDVESTDETGTAIRISLPR 378


>gi|317499214|ref|ZP_07957489.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291560399|emb|CBL39199.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
 gi|316893528|gb|EFV15735.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 495

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 63/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           +  +I   +        L S I HD+ +PI AI   +E + +      E M     +  +
Sbjct: 250 LKDSIDARIVYEKQNRDLISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTVYN 309

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKIDLSRERA- 116
               +  +         +DS I   + E++  +    D    +        +  S     
Sbjct: 310 KANDMNVLINELSLYSKIDSNIIPYNFEKININSYFKDCVDEIGADLEQRGMMFSYRNYC 369

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
                         +++ N+   A     +          +   +   ++K NG      
Sbjct: 370 AANVMVTADPEQLKRVINNIINNACKYNNKAKGKVGITLTEYDRKVQVAIKDNGIGISKE 429

Query: 162 EKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                +     +       +  E+   +  E        +   L K
Sbjct: 430 DLPHIFRRTYRADMSRNSAGGSGLGLSICKKIIEEHGGEIWAESKLRAGTTIFFTLNK 487


>gi|282900038|ref|ZP_06307997.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195070|gb|EFA70008.1| Multi-sensor Signal Transduction Histidine Kinase
           [Cylindrospermopsis raciborskii CS-505]
          Length = 663

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 62/220 (28%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           + I H++++P+  +      L       +     + ++    S    L  +      +  
Sbjct: 438 ATISHELLTPLTYVIGMSSTLLRWPLGELTPRQREYLQTIHDSGERLLDMINDILDLSQI 497

Query: 77  VDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSR-----ERAKIL 119
                 L   E             ++E        +++                   +I+
Sbjct: 498 QAGKTVLNICEFSLTRLAENIVDSLLEKSTNAKVTLKLDVQVNPRHDQFSADPGRIEQII 557

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGNVES 174
            NL   A    P+GG VT+      N  IF ++  G            +  Q VD +   
Sbjct: 558 WNLLTNAIKFTPQGGNVTLRFWVEDNTVIFQVEDTGIGIPEEKLPLVFEKFQQVDASYHR 617

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   I       +   ++ R+  E       + +  + 
Sbjct: 618 PYEGTGIGLALTKQIVELHRGRIEVESTVGVGSIFTVWIP 657


>gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
          Length = 1197

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 70/231 (30%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +     +            + H+  +P+  +   LE           ++  I     + 
Sbjct: 535 RQQAERLMELDRQKTEFFQNVSHEFRTPLTLMIGPLESAINQHQGLPYEQSSIALRNSRR 594

Query: 53  IRLSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +       +   +     M+ +F     ++ +  + +  +   +   ++   QV    E 
Sbjct: 595 LLRLVNQLLDLQRLDAGRMQPSFRPCNLIEFIHQIVETFKPYCEKKNINLLSQVIPCPEI 654

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                +  K+L NL   A      GG +TI+V+ + N+    +   G      +      
Sbjct: 655 YLDIEKFDKVLYNLLSNAMKFTNAGGSITIAVKSTDNKVCLKISDTGIGISKEQLPHLFE 714

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +G+V  + +   +    V  L   +   +            +  L+
Sbjct: 715 RFRQAEGSVNRSYEGSGLGLALVKELVELHGGEIDVSSEQGKGTTFTIHLQ 765


>gi|167768424|ref|ZP_02440477.1| hypothetical protein CLOSS21_02983 [Clostridium sp. SS2/1]
 gi|167709948|gb|EDS20527.1| hypothetical protein CLOSS21_02983 [Clostridium sp. SS2/1]
          Length = 495

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 63/238 (26%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           +  +I   +        L S I HD+ +PI AI   +E + +      E M     +  +
Sbjct: 250 LKDSIDARIVYEKQNRDLISNISHDLKTPITAIKGYVEGIMDGVADTPEKMDRYIKTVYN 309

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKIDLSRERA- 116
               +  +         +DS I   + E++  +    D    +        +  S     
Sbjct: 310 KANDMNVLINELSLYSKIDSNIIPYNFEKININSYFKDCVDEIGADLEQRGMMFSYRNYC 369

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
                         +++ N+   A     +          +   +   ++K NG      
Sbjct: 370 AANVMVTADPEQLKRVINNIINNACKYNNKAKGKVGITLTEYDRKVQVAIKDNGIGISKE 429

Query: 162 EKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +                +     +       +  E+   +  E        +   L K
Sbjct: 430 DLPHIFRRTYRADMSRNSAGGSGLGLSICKKIIEEHGGEIWAESKLRAGTTIFFTLNK 487


>gi|158422968|ref|YP_001524260.1| sensor protein [Azorhizobium caulinodans ORS 571]
 gi|158329857|dbj|BAF87342.1| sensor protein [Azorhizobium caulinodans ORS 571]
          Length = 1720

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 66/236 (27%), Gaps = 23/236 (9%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIE----DEVM 50
            + +       +  L A+    + I H+I  P+  +    E     L+    +     + +
Sbjct: 1482 LREARSELAQANQLTAMGSFATSIAHEINQPLATLVAHAEAGLRWLNRPEPDLGEVTKSL 1541

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            Q I  +   A   +  +R                D L  +  I         +   + +S
Sbjct: 1542 QSISQAGRRAADIITALRALVKQAPAPLTLVTIEDVLDEVLKIVCADLKTNGIQLSLALS 1601

Query: 104  WTGEKI-DLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLA 158
                 I   + +  ++L NL   A  ++         + IS    ++    +++  G   
Sbjct: 1602 TERHAILVNNIQLQQVLFNLITNAVQAMANAATPERHLRISTAIVQDNVEVTIEDTGCGM 1661

Query: 159  RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I      +      +       +   +   L    I+         + 
Sbjct: 1662 -SQEVIARIFQPFFTTKTTGMGVGLAICRSIMERHGGTLEARSIEGKGSTFFVRIP 1716


>gi|148271650|ref|YP_001221211.1| putative two-component sensor histidine kinase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|147829580|emb|CAN00495.1| putative two-component sensor histidine kinase [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 566

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRL 69
             + + H++ +P+ +I   +EL+ +   ED+         + ++  ++   +  +  +  
Sbjct: 338 FVASVSHELKTPLTSILGYVELIADDLEEDDLDDRITAARLAIVERNAQRLLGLIGDLLT 397

Query: 70  AFGY-----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121
           A  +        VD    + +   VI           V    E++    +     ++L N
Sbjct: 398 AAQHKLAVNRNLVDVGEIVENALDVIRPHAQASGVTLVEPDYEELVAEVDAVRIGQVLDN 457

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STI 176
           L   A    P GG V   V    +     +  +G      +                ST+
Sbjct: 458 LLSNAVKYTPEGGTVITEVGVDGDHFRLCVTDDGVGMSAEDTSQLFTRFFRTNSARASTV 517

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E        +   L 
Sbjct: 518 AGVGLGLSITRSIVEAHDGSIEVESAVGTGTTMRVRLP 555


>gi|148258553|ref|YP_001243138.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1]
 gi|146410726|gb|ABQ39232.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1]
          Length = 605

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 66/247 (26%), Gaps = 36/247 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + ++++     + + H++ +P+ ++ +++E L           ++ +I    
Sbjct: 360 MTDALYNRIEAIEM---FAADVAHELKNPLTSLRSAVETLPLARNDNSRGRLLAVIEHDV 416

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQ 101
                 +  +                 VD    L  +  V  +             +   
Sbjct: 417 KRLDRLISDISDASRLDAELQRQDMTLVDLRRLLTTLTSVANETKLGTDVAVEVRFEGRG 476

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            + T           +++ NL   A +    GGKV I+ +  ++E    +  +G   R  
Sbjct: 477 TNDTFSVPGHDSRLGQVISNLLSNAQSFSTAGGKVRITCRRVRSEIEILVDDDGPGIRED 536

Query: 162 EKFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNV 207
                      +           +       +   +  R+  E                 
Sbjct: 537 ALQRIFERFYTDRPHQGFGQNSGLGLSISKQIIDAHGGRIWAENRPGPVDADGNPTVAGA 596

Query: 208 VLSALLE 214
                L 
Sbjct: 597 RFIVRLP 603


>gi|197117407|ref|YP_002137834.1| bifunctional sodium solute symporter/sensor histidine kinase response
            regulator [Geobacter bemidjiensis Bem]
 gi|197086767|gb|ACH38038.1| sodium solute symporter and sensor histidine kinase response
            regulator, SSF and PAS domain-containing protein
            [Geobacter bemidjiensis Bem]
          Length = 1323

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 61/237 (25%), Gaps = 28/237 (11%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSS 57
            AK      +      L  S + H++ +P+ AI    ++L         + + ++++R   
Sbjct: 854  AKERAEVANQAKSAFL--SSMSHELRTPLNAILGYAQILKRQDNLTDAQRQQLEIVRGCG 911

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------------W 104
               +  +  +            L  L      +   +    +V+                
Sbjct: 912  EHLLSLINDVLDMGKIEAQKMELAELSFDLSALLGQVFSIAKVKADEKDLGFKYEELNRL 971

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARF--- 160
                    R+  +ILLNL   A     RG         S        +   G        
Sbjct: 972  PRAVRGDQRKLKQILLNLLSNAVKYTHRGCVTVRVRYHSSTGVFACEITDTGTGIPRDKL 1031

Query: 161  ---PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E F Q+ DG      +   +       L      ++  E            L 
Sbjct: 1032 GIIFEPFVQLADGGQIR--EGTGLGLSITRRLVSLMHGQVTVESEPGAGSTFRVELP 1086


>gi|197119641|ref|YP_002140068.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197089001|gb|ACH40272.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 919

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 61/240 (25%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        ++    +   + + H+I +P+ A+     L  +  ++ +    +     S+
Sbjct: 425 LRHERDLVQAASRAKSQFLANMGHEIRTPLNAVMGLSRLALKTELDRKQRGYLEKIGSSS 484

Query: 61  IIRLKF----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              L                  +         V   I      +  E  I    R+    
Sbjct: 485 RTLLNIINDILDFSKMEAGKLELEKTDLNLYEVLGNISDMHQSKAQEKGIEFRVRLAPDL 544

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARF 160
             + +       ++L NL   A     +G        +  ++ +    F ++  G     
Sbjct: 545 PNKLVGDPLRLTQVLNNLIANAVKFTEKGEVVVAIKPLRREEEEVVVHFCVQDTGIGI-A 603

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE+  +I                   +       L       L  E +       S  + 
Sbjct: 604 PEQMGKIFTPFTQADSSTTRRYGGTGLGLSISRQLVELMGGELQVESVPGSGSSFSFTVP 663


>gi|170720229|ref|YP_001747917.1| histidine kinase [Pseudomonas putida W619]
 gi|169758232|gb|ACA71548.1| histidine kinase [Pseudomonas putida W619]
          Length = 585

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + S  L AL  + + + H+I  P+      LE L               ++ 
Sbjct: 347 LRTAQEGLVQSAKLAALGQMSAAMAHEINQPLTTQRMQLETLRLLLDHGRYDEARAALEP 406

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104
           +             ++     +       +D    +     +         V+  + ++ 
Sbjct: 407 LEQMLTRMAALTSHLKTFARNSPVGLRERLDLATVVDQALHLLDTRIRSDEVEVALYLAR 466

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS--LKINGNLARFPE 162
                  +    ++L+NL   A  ++       + ++     + +   +  +G      +
Sbjct: 467 PAWVRGDAIRLEQVLINLLRNALDAMADKRYKRLEIRIEPEHDQWRLSVLDSGGGIAETD 526

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++ D    +    +   +       + HE   +L  E +      LS  L +
Sbjct: 527 L-ARVFDPFFTTKPVGEGLGLGLAISYGIIHEAGGQLQAENLPG-GARLSLTLPR 579


>gi|83643227|ref|YP_431662.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Hahella chejuensis KCTC 2396]
 gi|83631270|gb|ABC27237.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Hahella chejuensis KCTC 2396]
          Length = 655

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 62/231 (26%), Gaps = 21/231 (9%)

Query: 4   NICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIR--- 54
                + +  L     L + I H++  P+ A+    +     ++    E   + L     
Sbjct: 401 TQDELIQAAKLALLGQLSAGINHELNQPLTALRTYAQNAQAFIERNMPEKAQLNLREIVG 460

Query: 55  ---LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGE 107
                +        F R     +G V     +    ++ E  +                 
Sbjct: 461 LTDHMASIIGQLKIFARKEANVSGPVHVNSCIDAALKITEPELRRAHVNWRVDAAADDIY 520

Query: 108 KIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                    ++L+NL   A  ++   +  ++ I   + +++    ++  G+         
Sbjct: 521 VQGDMVRLEQVLINLITNALHAMSGSQEKQLRIQCLNLEDKVRIQVRDTGSGI-PEHVMQ 579

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +    +        +       +    K  L     ++   +    L 
Sbjct: 580 HIFEPFYTTKNRGQGLGLGLSISYRIIESMKGELRAANNEEGGALFMIELP 630


>gi|116669288|ref|YP_830221.1| histidine kinase [Arthrobacter sp. FB24]
 gi|116609397|gb|ABK02121.1| histidine kinase [Arthrobacter sp. FB24]
          Length = 406

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +A +      + ++     + + H++ +P+GAI    E L+    +        + ++  
Sbjct: 135 LADDRTEITRTEEIRNDFVANVSHELKTPVGAISLLAEALESSADDEEAVRRFAKRMQKE 194

Query: 57  SMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           S      ++ +                 VD    + +     +          V      
Sbjct: 195 STRLAALVQDIIELSRLQGANVAQQGHPVDINSVITEAVDRSQLPAESKNISIVVGGHVD 254

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  ++  ++  L      A    P   +V I V+  +     S+   G+    PE   
Sbjct: 255 AKVYGDQDLLVTALRNLIDNAIRYSPENTRVGIGVRAKEGLISISVTDQGDGL-SPEDQE 313

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +    V  +   +   +            +  L 
Sbjct: 314 RVFERFYRVDAARSRQTGGTGLGLSIVKHVISNHGGEVTLWSQPGQGSTFTIRLP 368


>gi|329934373|ref|ZP_08284452.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
 gi|329305969|gb|EGG49824.1| two component system histidine kinase [Streptomyces
           griseoaurantiacus M045]
          Length = 478

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 68/231 (29%), Gaps = 18/231 (7%)

Query: 3   KNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----------VM 50
           +     L +M+  A    + + H++ +P+ A+     LLD+                 V 
Sbjct: 245 QEDAATLRAMEARARRFAADVSHELRTPLAAMTAVTGLLDDDAAAGHLGPETSEAITLVA 304

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EK 108
              R  +      ++  R   G        I LG++            RV V   G    
Sbjct: 305 DETRKLAHLVEDLMEISRFDAGAARLDLDEIDLGELLHKTLALRHWQDRVTVDVPGGLRA 364

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165
               R    +L NL   A      G +V I  +   +  + ++  NG        P  F 
Sbjct: 365 RLDPRRIDVVLANLTGNALRHGGPGARVRIRARTEADRLVLTVHDNGPGIAEDMLPHVFD 424

Query: 166 QIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   G+      +   +        A  +   L      +   V +  L +
Sbjct: 425 RFTKGDTARTRSEGSGLGLAIAAENARLHGGTLTAANSTEGGAVFTLTLPR 475


>gi|320353834|ref|YP_004195173.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
 gi|320122336|gb|ADW17882.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfobulbus propionicus DSM 2032]
          Length = 704

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 65/231 (28%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57
            + +   L  +  +  L + I H+I +P+ +I+ +++LL +          ++   +   
Sbjct: 461 TEELIRRLDRLTSLGQLSAGIAHEIRNPLASIYFNVQLLAKKLPAADPTLALINDTQKGI 520

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLS 112
                 +K M      +        L  + +     +          V +    +   + 
Sbjct: 521 NRIRALVKGMLDFAKPSLPSLKSGSLERVLRESIGLMDSQLKKQRIEVALQVEKDLPPVV 580

Query: 113 RERAKILLNLFMVAHASLPRGG---------KVTISVQDSKNENIFSLKINGNLARFPEK 163
            +  +I   +  +   ++             +          + +     +G     PE 
Sbjct: 581 FDAHQIQQVVVNLLLNAMEAMPGGGRVDLVARDERGTDRPGGQVVLLCTDHGPGI-PPEN 639

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +  D   +    V  +  +++  +     +           
Sbjct: 640 LGKIFNPFFTTKADGTGLGLSIVHKILEQHQATVDVISREGSGTTFMIQFP 690


>gi|309779206|ref|ZP_07673969.1| sensory box sensor histidine kinase/response regulator [Ralstonia
           sp. 5_7_47FAA]
 gi|308922010|gb|EFP67644.1| sensory box sensor histidine kinase/response regulator [Ralstonia
           sp. 5_7_47FAA]
          Length = 795

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 65/245 (26%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           + +       +  + AL  L   + HD  + +  +  +LELL+          E +    
Sbjct: 263 LEQTQRALFQAQKMEALGKLTGGVAHDFNNVLQVLRGNLELLESRHGRDAWSAERLNNAI 322

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GE 107
            +          +            +I      + ++D +       +            
Sbjct: 323 DAVDRGAKLAAQLLAFGRKQPLAPVVINPAHQLRAMDDLLRRALGEAIEIESVVAGGLWN 382

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLK 152
                 +   ++LNL + A  ++P GGK               + +    +    + ++ 
Sbjct: 383 TAVDPHQFENVILNLAINARDAMPDGGKLTLELSNATLDDDYVMALPDVPAGQYVMLAVT 442

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G     PE   +  D    +  +     +          ++   +           + 
Sbjct: 443 DTGTGM-SPEVMERAFDPFFSTKREGEGTGLGLSMAYGFVKQSGGHIRLYSEVGEGTTVR 501

Query: 211 ALLEK 215
             L +
Sbjct: 502 VYLPR 506


>gi|302387279|ref|YP_003823101.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302197907|gb|ADL05478.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 506

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 64/239 (26%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELL--------------DE 42
                  LS  ++      + L   I HD+ +P+  I  + E+L              ++
Sbjct: 260 RSAQERILSKEEIAQERYRSNLLRAISHDLRTPLSGIMGTSEMLMGMTDQEDGRYALAED 319

Query: 43  VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           +  + + +  +  + +          +      +V+ +I +  +                
Sbjct: 320 IYKDADWLHSLVENILGLTRLQDSRLVLNKQMEAVEEVISVAVMAIGKRAPEREIAVHIP 379

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARF 160
                    ++   ++L+NL   A    P  G++  T+     +   +F++   G     
Sbjct: 380 DSVMLVPMDAKLIDQVLVNLLDNAVKHTPPEGEISVTVIENKEEEAAVFTVADRGMGIAP 439

Query: 161 PEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +                       +       +   +   +  +         +  L 
Sbjct: 440 VDLSHVFQMFYTTHEKGADSQRGVGLGLAICESIVKAHGGTISAQNRRGGGAEFTFTLP 498


>gi|226940498|ref|YP_002795572.1| KdpD [Laribacter hongkongensis HLHK9]
 gi|226715425|gb|ACO74563.1| KdpD [Laribacter hongkongensis HLHK9]
          Length = 877

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 66/228 (28%), Gaps = 15/228 (6%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++   ++    +   L S + HD+ +PI AI      L++   +    +L       A 
Sbjct: 640 AQDALVSMEGERMRNTLLSAVSHDLRTPITAIAGLAGTLEKKLADPAQQELAHAIHGEAT 699

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKIDL 111
              + +             + L    Q               +     VQV+   E   L
Sbjct: 700 QMNRLVSNLLDMARLQSGGVKLRLDWQSLEEVVGSALGQLRPVLARHPVQVALPAELPLL 759

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--KFTQ 166
             +     ++L+NL   A    P G  + IS +         +   G     P    F  
Sbjct: 760 EFDALLIERVLVNLLDNAAKYTPVGSGIRISARLDNGWLRLRVDDEGPGLPEPAESLFQP 819

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V G  ES      +      L+   +   +  E   +        L 
Sbjct: 820 FVRGVRESATSGAGLGLALCRLIVEAHGGTIATENRHEGGARFVVALP 867


>gi|187778165|ref|ZP_02994638.1| hypothetical protein CLOSPO_01757 [Clostridium sporogenes ATCC
           15579]
 gi|187775093|gb|EDU38895.1| hypothetical protein CLOSPO_01757 [Clostridium sporogenes ATCC
           15579]
          Length = 454

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + +++      +     L   L S I H+I +P+  + N+LE + +    + +E +  + 
Sbjct: 213 LRESVNILAEKLKYQDSLRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272

Query: 55  LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101
              +     L  + +            F      + +  +            I +   ++
Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFKKIFLDELIADICSDFYAIAENKNIKLQYHME 332

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A      GG+V I +  S  + +  +K NG   +  
Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKKIVVEVKDNGVGIKKE 392

Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F ++  G+      + + I    V  +   +   +  E  +           K
Sbjct: 393 DLPFIFERLYRGDKSRHQFEGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKIYFHK 450


>gi|170023402|ref|YP_001719907.1| sensor protein KdpD [Yersinia pseudotuberculosis YPIII]
 gi|169749936|gb|ACA67454.1| osmosensitive K+ channel signal transduction histidine kinase
           [Yersinia pseudotuberculosis YPIII]
          Length = 908

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 649 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 708

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 709 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALHMLETTLSQHQIRVELP 768

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I  +         +  NG      +
Sbjct: 769 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVKGEWLNVDVWDNGPGVTIGQ 828

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 829 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 883


>gi|197117185|ref|YP_002137612.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086545|gb|ACH37816.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 871

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 70/242 (28%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +    ++  ++ + +L   I HD  + + AI  + EL    +D+     + +Q I  +S 
Sbjct: 493 ERQLLHMQKLESLGVLAGGIAHDFNNILMAIMGNAELALMRIDKDSPAVDNLQKIEQAST 552

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    + M           G+ D    L ++  ++E  ++    V++      + +  +
Sbjct: 553 RAADLARQMLAYSGKGRFVVGNTDLNRLLQEMLHMLELSVSKSAIVRLDLHPSLLQIEAD 612

Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152
             +I   +  +   +                                     +     + 
Sbjct: 613 ATQIRQVVMNLVINASEALGDGRGFISIKTLSLKCDRSYLKKAWLDVDVPEGDYVCLEVT 672

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G       +  +I D    +      +     + +   ++  ++ E   +       L
Sbjct: 673 DTGCGMDSATRS-KIFDPFFTTKFTGRGLGMAATLGIVRGHRGAIIVESEPNQGSCFRVL 731

Query: 213 LE 214
             
Sbjct: 732 FP 733


>gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation
           [Herminiimonas arsenicoxydans]
 gi|133738736|emb|CAL61783.1| Sensor protein KdpD [Herminiimonas arsenicoxydans]
          Length = 921

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLS 56
           A++    + S  L   L S + HD+ +P+ ++    E L          + E+ Q +   
Sbjct: 672 AQDALVRMESERLRNSLLSALSHDLRTPLTSLVGLSESLTMSKPPLTSSQQELAQALHDE 731

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
           +      +  +                    + +        +  ++    K  L+ +  
Sbjct: 732 ARRMSNLVSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLP 791

Query: 115 --------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++L NL   A    P G ++ I+ + S      S+  NG      +    
Sbjct: 792 LVRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQEEAI 851

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   G  ES      +       +   ++  +      D    ++  L 
Sbjct: 852 FDKFTRGERESATPGVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLP 902


>gi|160877441|ref|YP_001556757.1| osmolarity sensor protein [Shewanella baltica OS195]
 gi|160862963|gb|ABX51497.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS195]
          Length = 429

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  ++  ++D ++  I     
Sbjct: 214 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 270

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R     +  +  +  L       E   A +  V ++   E    +    ++
Sbjct: 271 IISQFIAYIRQDQETSRELGQINKLIQDVAQAEANRAGEIEVVLTDCPEAQFQAIAIKRV 330

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS Q       F+++ NG      +    F     G++   
Sbjct: 331 LSNLVENAFRYGS--GWIRISSQFDGKRIGFTVEDNGPGIDESQITKLFQPFTQGDIARG 388

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   ++ ++      +  +     L 
Sbjct: 389 SVGSGLGLAIIKRIIDRHQGQVTLSNRAEGGLRAQVWLP 427


>gi|55377815|ref|YP_135665.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55230540|gb|AAV45959.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 644

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 49/216 (22%), Gaps = 8/216 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +       +  L     S + HD+ +P+      L LL+             +Q    
Sbjct: 418 LQRKRKLERQNERL-DQFASIVAHDLRNPLNVASGRLSLLERDVDASHDASINAIQEQLE 476

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
              S I     +  +       D +          +        + V  T +        
Sbjct: 477 RMESIIDDSPTLARSGETVTETDEVDLEMIAYDAWQSVETGGATLVVKTTLQLDGDRNRL 536

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
             +  NLF  +                      F ++  G      E+   + +    + 
Sbjct: 537 RNLFENLFRNSVEHNESTDLTVEVGSLPDG-VGFYVEDTGTGIPNQER-DAVFEQGYTTN 594

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            +        V  +   +   +     +        
Sbjct: 595 TEGTGFGLAIVKDIVQAHGWEISVTEAESGGARFVV 630


>gi|107101043|ref|ZP_01364961.1| hypothetical protein PaerPA_01002073 [Pseudomonas aeruginosa PACS2]
 gi|254234711|ref|ZP_04928034.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
 gi|126166642|gb|EAZ52153.1| hypothetical protein PACG_00580 [Pseudomonas aeruginosa C3719]
          Length = 651

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+  +   L+LL+      E  +   L++ S  
Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312

Query: 62  IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
             LK +     ++                  +  G               +++       
Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
             E         +IL+NL   A                ++         ++  +G     
Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        D ++        +       LA      L  E  +      +  + 
Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491


>gi|332163325|ref|YP_004299902.1| osmolarity sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667555|gb|ADZ44199.1| osmolarity sensor protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330862978|emb|CBX73111.1| osmolarity sensor protein envZ [Yersinia enterocolitica W22703]
          Length = 450

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 217 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +  V +                
Sbjct: 277 CNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVIAAESGYERVIETDLCEGEVMVDIHPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  +    F   V G+
Sbjct: 337 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A + 
Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 437


>gi|300718777|ref|YP_003743580.1| Osmolarity sensor protein [Erwinia billingiae Eb661]
 gi|299064613|emb|CAX61733.1| Osmolarity sensor protein [Erwinia billingiae Eb661]
          Length = 450

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 62/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ +      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSQEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +   ++             + + N+ + A      
Sbjct: 295 QFERADLNGVLGEVVAAESGYEREIENEVMTSELMVDINPLSIKRAVANMVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G   R       F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGSELQ--RAWFQVEDDGPGIRPDQLKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              ++  L     D   + + A L 
Sbjct: 413 IDAHQGSLEIGDSDRGGLRIRAYLP 437


>gi|294637120|ref|ZP_06715431.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
 gi|291089691|gb|EFE22252.1| sensor kinase protein RcsC [Edwardsiella tarda ATCC 23685]
          Length = 999

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 67/221 (30%), Gaps = 24/221 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++  + + H++ +P+  I  +L+LL    + +EV +L+   S S+ + LK +     ++ 
Sbjct: 513 SMFLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSK 572

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +     V  + I                     ++     E         ++L
Sbjct: 573 IESEQLKIEPGRFVAREVIPHIIGNYLPLVVRKRLTLYCFIEPDVPAEISGDIMRIQQVL 632

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173
            NL   A       G + +  + +     F ++  G      +   ++ D   +      
Sbjct: 633 SNLLSNAIKFTDT-GCIILQARVNDFYLEFRIRDTGMGIPARDVL-RLFDPFFQVGSGVQ 690

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       L       +  E       + +  L 
Sbjct: 691 RHFHGTGLGLAICEKLVSLMDGDIAVESEPGLGSIFTIRLP 731


>gi|257142328|ref|ZP_05590590.1| sensory box histidine kinase [Burkholderia thailandensis E264]
          Length = 709

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 475 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 531

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 532 ATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQITHDRLPIVH 591

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++    K  I+          +  +F ++ NG     P+ F +I
Sbjct: 592 GIAAQLVLLFQNLIGNAIKFRSKERIARIHLEADTRDDAWVFRVRDNGIGI-DPQYFERI 650

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 651 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIAVESEPGRGTTFSFALSR 702


>gi|281418385|ref|ZP_06249405.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
 gi|281409787|gb|EFB40045.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
           JW20]
          Length = 932

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H+I +PI +I     LL    +  +  + +    ++A 
Sbjct: 328 ARDEADKANRAK--SEFLASMSHEIRTPINSIIGYQYLLKNSVLSPKQREYVENIGLAAK 385

Query: 62  IRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L  +     ++                 D L  L  I  +      ++ R++V     
Sbjct: 386 NLLAIINQILDFSKIEAGRMVLEEVDFNIDDVLNELMIIVGMEAKRKGIELRIKVDEDVP 445

Query: 108 KI--DLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
           +          ++++NL                   +   +      FS+   G      
Sbjct: 446 RFLKGDITRLKQVVMNLVSNGIKFTHEGYISIRVELVEKNEENACIKFSVTDTGIGISDE 505

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +K          D +         +       L    K  +  E         S  L
Sbjct: 506 QKKLLFQVFTQGDASTSRKYGGTGLGLAICKRLVELMKGEINVESEVGKGSTFSFSL 562


>gi|218246325|ref|YP_002371696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
 gi|218166803|gb|ACK65540.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 8801]
          Length = 1002

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
           +      ++ +L  +   +++ H++ +P+ AI    +++  +  +  +  + + + + S 
Sbjct: 517 EEKTRQANAANLAKSQFLAKMSHELRTPLNAILGFTQMMNRDSSLSSQQQEYLGIINRSG 576

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--W 104
              L                + L        + +  + ++  +      ++  V      
Sbjct: 577 EHLLSLINDVLEMSRIEAGQLTLNQTCFNLHELIKSVKELLTLKALSKGLELTVHQDEEL 636

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLA 158
                    +  +I++NL   A      G         +      +      +K  G   
Sbjct: 637 PKYIEGDESKLRQIIVNLVGNAIKFTHVGHIDLYLSVLSHQPYTKEMMLQLEVKDTGIGI 696

Query: 159 RFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E  T               +   +        A      +  +         +  ++
Sbjct: 697 NQDELETIFEAFKQTENNFQSKEGTGLGLSISRQFARLMGGDITVQSQLGQGSTFTCTIK 756


>gi|188583109|ref|YP_001926554.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
 gi|179346607|gb|ACB82019.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium populi BJ001]
          Length = 512

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 68/243 (27%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED 47
            +     L  +         L A+  + + + H++  P+GAI N       LL + G + 
Sbjct: 264 QQRTEARLQELQSELGHVSRLSAMGEMATTLAHELNQPLGAISNYTNGCRRLLTQPGPDT 323

Query: 48  EVM---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFI 94
                       +    +        +F+        +      + +   +      +  
Sbjct: 324 IARAREVLDKASEQALRARQIISRLREFVDRGETEKRAEPVAEMIEEAGALTLAGAGEQG 383

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---VQDSKNENIFSL 151
              + V     G  +    +  ++L+NL   A  ++  G +  ++    + + +    ++
Sbjct: 384 VTARIVPDRGIGSVLADRVQIQQVLINLMRNALEAMQGGRRRELTVAARRVAPDWTEIAV 443

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              G          ++    V +      +       +   +  RL  E           
Sbjct: 444 SDTGPGI-AEAVADRLFQPFVTTKDGGMGVGLSICRTIVEAHGGRLWVERNAAGGATFRL 502

Query: 212 LLE 214
            L 
Sbjct: 503 TLP 505


>gi|118580477|ref|YP_901727.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503187|gb|ABK99669.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 738

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 63/239 (26%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S     +   + + H+I SP+  I    +L++   + DE  + + +   S+ 
Sbjct: 250 AKEQAEAASRAK--SEFLANMSHEIRSPMNGIMGMAQLMEYTELTDEQREYLNVIRSSSH 307

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +  +     +    I    + Q+ +  + +   +  +  
Sbjct: 308 GLLSLINNILDLSKIEAGKIELERSDFSLRASIDDIVKAHLSQIHDKGLTIRTDIPAAAP 367

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
              I       +ILLNL   A     R            +D +      +   G      
Sbjct: 368 DTLIGDQLRLKQILLNLLGNAIKFTCRGGIGISVAVSERRDERVRLRIDVTDTGIGI-PT 426

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I                   +       LA     ++  E  +      S  L 
Sbjct: 427 DAMERIFKPFTQADSSTTRQYGGTGLGLSICSRLAELMDGKITVESREGSGSTFSVHLP 485


>gi|53803076|ref|YP_115241.1| nitrogen regulation protein NtrY [Methylococcus capsulatus str.
           Bath]
 gi|53756837|gb|AAU91128.1| putative nitrogen regulation protein NtrY [Methylococcus capsulatus
           str. Bath]
          Length = 734

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 62/235 (26%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53
           +++   + +    A   +  R+ H+I +P+  I  S E L        +    + + +  
Sbjct: 482 EDVTALILAQRQAAWSEVARRLAHEIKNPLTPIQLSAERLHHKLASRLDERDAEILDRST 541

Query: 54  RLSSMSAIIRLKFMRLAFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           R            +     Y            +     E V           ++      
Sbjct: 542 RTIVHQVEALKAMVNAFAEYARSSTIQLRRVALAEIVEEVVALYPPQSGMSFEIDEEPSL 601

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISV------QDSKNENIFSLKINGNLAR 159
             +S +  ++   L      +  +L    +  +           +     +++ NG    
Sbjct: 602 PRISGDPLQLRQVLHNLIKNSQEALTPSTQGKMCFILRKTVDQGEAFVQLTVRDNGPGI- 660

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+  +I +  V +      +    V  +  E+   +  E              
Sbjct: 661 PKEQADRIFEPYVTTKTKGTGLGLAIVKKIIEEHGGTIRVENGLRQGAGFIIRFP 715


>gi|323700432|ref|ZP_08112344.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323460364|gb|EGB16229.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 570

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 66/233 (28%), Gaps = 25/233 (10%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIH---NSLELLDEVGIEDEVMQLIRL----- 55
              + +  L ++  L + I H+I +P+  +      ++ L E G+     +         
Sbjct: 325 EQVIEAGKLASVGELAAGIAHEINNPVAIMVEEAGWIQDLLEEGLSKSDNEREVQRALNQ 384

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104
                          L F R       S D    + +I ++          V        
Sbjct: 385 IRTQGARCKEITHKLLSFARKIDPTVMSFDLNELVREIAELSAQRAKYANVVIETSLGDN 444

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEK 163
                    E  ++ LNL   A  ++  GG  + IS +   +  +  +   G+       
Sbjct: 445 IAPIKASPSEMQQVFLNLVNNAIDAMDPGGGNLDISTRQEGDTVLTLVSDTGSGIPEANL 504

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +        +    +  + ++    +  +         +  + 
Sbjct: 505 S-RIFDPFFTTKPVGKGTGLGLSIIYGIVNKMGGTISVDSAVGRGTTFTISMP 556


>gi|298248980|ref|ZP_06972784.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297546984|gb|EFH80851.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 981

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------LIRLSSMSAIIRLKFMRLA--- 70
           S   H++ +P+ A+    +L+ +        +       +  S       +  +      
Sbjct: 762 SMASHELRNPLAAVKMQTQLVQKRLERQSHHEAATALSRVEGSVKQLERLIGELLDVSKI 821

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILLNLFM 124
                      VD    L ++   ++        V   +     +       ++  NL  
Sbjct: 822 QAGRLEYQQEMVDLDALLHEVADTMQQIHTTHTIVVRGTAPCSLVGDKDRLGQVFTNLIS 881

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDS 178
            A    P    V + +  S       ++ +G      E+  +I D         +  I  
Sbjct: 882 NAIKYSPGAETVEMDLSTSAETVTIRVRDHGLGI-PREQRDKIFDRFYRVTDPKQRAIPG 940

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  Y V  +   +   +  E         +  L K
Sbjct: 941 LGMGLYIVAEIVKSHGGTITVESQVGTGSTFTVTLPK 977


>gi|226355986|ref|YP_002785726.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226317976|gb|ACO45972.1| putative histidine kinase, hybrid [Deinococcus deserti VCD115]
          Length = 413

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 54/220 (24%), Gaps = 8/220 (3%)

Query: 2   AKNICFNLSSMDLV-AL-----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            ++    + +  L  AL       +   H++ +P+ A+H  L   +      + +   + 
Sbjct: 188 RQSQRLEVQAKQLEEALNMQKTFLAETSHELRTPLTALHGYLRRAEREVGGSQTLLDAQR 247

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            + +    +  +             +   ++  V+              + E +      
Sbjct: 248 VAENMTRLVNDLLQLSRGELVQSIEMHFMNLGNVLRQVGRDFGVRAPEESPEIVGDPGRL 307

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++ +NL   A         V + V     E    +   G          +I D      
Sbjct: 308 TQVFMNLVTNAVRVSGSPDLVHMEVAHRPGEVEVRVVDRGPGV-PDPIKPRIFDKFYRGK 366

Query: 176 IDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +   +               L 
Sbjct: 367 EAGSAGLGLTIAQQVVVAHGGSIDVIDTPGGGATFRVRLP 406


>gi|218892432|ref|YP_002441299.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
 gi|218772658|emb|CAW28443.1| probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           LESB58]
          Length = 651

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+  +   L+LL+      E  +   L++ S  
Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312

Query: 62  IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
             LK +     ++                  +  G               +++       
Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
             E         +IL+NL   A                ++         ++  +G     
Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        D ++        +       LA      L  E  +      +  + 
Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491


>gi|253699663|ref|YP_003020852.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774513|gb|ACT17094.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1040

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 66/240 (27%), Gaps = 33/240 (13%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII- 62
             L +  L +L  L   I HD  + +  I  +  L L  +  +    + ++    +A+  
Sbjct: 663 QLLHAQKLESLGILAGGIAHDFNNILTGILGNSSLGLMRIDPDSPAAENLQNIEKAAVRA 722

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  L +          V+  + L ++  ++E  ++    +++S   E   +  +  
Sbjct: 723 ADLAKQMLAYSGKGMFVVEPVNLNLLLEEMIHLLEVSVSKKAELKLSLAQELPPVQADPT 782

Query: 117 KILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLKIN 154
           ++   +  +   +                                           +   
Sbjct: 783 QLRQIVMNLVINASEAIGEEGGSITIGTGYRHFDQSYLKEAWFDCELVEGEFVFLQVADT 842

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G       +  +I D    +      +    V+ +   +K  +  +         + LL 
Sbjct: 843 GCGMDESTRS-RIFDPFFTTKFTGRGLGMSAVLGIIRGHKGAIKVQSKPGEGTTFTVLLP 901


>gi|168231939|ref|ZP_02656997.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472641|ref|ZP_03078625.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194459005|gb|EDX47844.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205333733|gb|EDZ20497.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 778

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTVEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|241663307|ref|YP_002981667.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia
           pickettii 12D]
 gi|240865334|gb|ACS62995.1| PAS/PAC sensor signal transduction histidine kinase [Ralstonia
           pickettii 12D]
          Length = 442

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 53/217 (24%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM------ 67
             + + H++ +P+  +   LE + +       +   + ++   +M     ++ +      
Sbjct: 210 FVANVSHELKTPLTVLSGFLETVRDIPLPEEDKRRYLDMMHTQAMRMQHLVEDLLALATL 269

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        +  ++     +            +             E      NL 
Sbjct: 270 EGNPEPPSLAPVPMQRMMLQLQHDIEALSAGRHTVSMTCDPGVSVCGAELELLSAFSNLA 329

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A    P GG + +         ++S+   G     PE   ++ +              
Sbjct: 330 SNAVRYTPDGGSIRLDWGVRDGHAVYSVTDTGIGI-APEHIPRLTERFYRVDRSRSRDTG 388

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +   L             A+  
Sbjct: 389 GTGLGLAIVKHVLSRHGGELQVTSEHGKGSTFRAVFP 425


>gi|88608550|ref|YP_505906.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama]
 gi|88600719|gb|ABD46187.1| sensor histidine kinase [Neorickettsia sennetsu str. Miyayama]
          Length = 447

 Score =  110 bits (274), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 62/232 (26%), Gaps = 21/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60
           AK     +SS    +   + + H++ +P+ AI    +L+     +  E  +       S 
Sbjct: 211 AKESIEEISSQK--SQFLANVSHELKTPLNAIIGFSDLIRTAEVLGTEHREYANDIYYSG 268

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108
                            +          D +       ++        K V+  ++ +  
Sbjct: 269 NHLLNLINDILDFSKSELNNLEIKPTLFDLVRLTETCIRMTTTKRKEIKIVKSFFSNKIL 328

Query: 109 -IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                +   +++LN+   +       G + IS+    +E    +  NG      +    +
Sbjct: 329 IKSDHKRVKQVILNILSNSIKFTNEDGLIRISIIRLPSEIEIEISDNGVGIPEKDIAKAL 388

Query: 168 VDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         D   I       L          E  +    V+   L 
Sbjct: 389 SVFGQSNTELSRKYDGAGIGLPLSKKLVELMGGVFEIESKEGSGTVVKIRLP 440


>gi|329896809|ref|ZP_08271725.1| two-component system sensory histidine kinase [gamma
           proteobacterium IMCC3088]
 gi|328921564|gb|EGG28944.1| two-component system sensory histidine kinase [gamma
           proteobacterium IMCC3088]
          Length = 508

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MAK    + ++    +   + + H++ +P+ AI    E++ E   + E +   +L     
Sbjct: 260 MAKEQADSANAAK--STFLANVSHELRTPLNAIIGYSEMIQEEVNDGEAINKDQLQEDLT 317

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED------------------FIAVDKRVQV 102
            I     +L       +D          +  +                         +  
Sbjct: 318 KIVFSGRQLLTLINDVLDLAKIETGKMTIHPESFDPIATLHTVADSMAPLLNTQGNEMCW 377

Query: 103 SWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLA 158
              G    +  +     +I+ NL   A+     G     + + DS+ +    ++  G   
Sbjct: 378 DIQGPLPCIHTDATKFRQIVTNLLSNANKFTEAGSITIRAGITDSQEQIWIEVRDTGIGM 437

Query: 159 RFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +           + +  S      +        AH     +      +        L
Sbjct: 438 TDQQLGRIFEAFEQAERSTSSRYGGTGLGLSLCQEFAHMLGGDITASSTPNVGSSFIVTL 497

Query: 214 E 214
            
Sbjct: 498 P 498


>gi|320326246|gb|EFW82300.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330670|gb|EFW86647.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881343|gb|EGH15492.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 530

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L +            + V V  +   +   
Sbjct: 356 SGRIDRVIANVLQLSRRRESQPELLDLKTWLENFVAEFRSAAMAGQSVHVEISPGTLTTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            R        + +      +  I  ++ +G         
Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHL- 474

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++ +    +      +  Y    L   N+  L           L   
Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522


>gi|320175771|gb|EFW50857.1| Osmolarity sensory histidine kinase EnvZ [Shigella dysenteriae CDC
           74-1112]
          Length = 450

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGSSERGGLSIRAWLP 437


>gi|319784578|ref|YP_004144054.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317170466|gb|ADV14004.1| ATP-binding region ATPase domain protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 577

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 65/220 (29%), Gaps = 26/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIRLSSMSAII-----RLKFM 67
           + + H++ +P+ AI    ++L            + E + L+R S    +           
Sbjct: 325 AVVSHELRTPLNAIIGFSDMLLHEMFGAFKDPRQKEYVGLVRDSGQHLLAVVTSILDVSR 384

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-------AKILL 120
             +  Y    +       ++          +   +    +    + +         ++L+
Sbjct: 385 IESGVYATEPEPFRFAEAVDMCQSMMQLQAQAKNIDLQAQIAPDAGDINADQRAVQQMLI 444

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P GG V +  +   +   F ++  G      E F  +    +        
Sbjct: 445 NLVSNAIKFTPDGGDVVVGAKRIGSRLHFWVRDTGIGI-AEEDFANLGKPFMQIQNDYTR 503

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    V  L   ++  +  E +      ++  L 
Sbjct: 504 RFEGTGLGLSLVKGLVALHEGTMSIESMPGEGTTVTISLP 543


>gi|313106625|ref|ZP_07792850.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
 gi|310879352|gb|EFQ37946.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           39016]
          Length = 651

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+  +   L+LL+      E  +   L++ S  
Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312

Query: 62  IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
             LK +     ++                  +  G               +++       
Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
             E         +IL+NL   A                ++         ++  +G     
Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        D ++        +       LA      L  E  +      +  + 
Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491


>gi|302338614|ref|YP_003803820.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635799|gb|ADK81226.1| integral membrane sensor signal transduction histidine kinase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 356

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 64/209 (30%), Gaps = 17/209 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H+  +PIG+I      L    +  E         +    RL  M        ++D+   
Sbjct: 133 SHEFKTPIGSIRGFARQLQNENLSPEKRTEYTDIIIKESERLTNMASNILLLNNLDNQQI 192

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------------KILLNLFMVAHA 128
           + D  +   D    +  + +     + +L  +                 + +NL   A  
Sbjct: 193 ITDKIEYELDEQIRNCVILLEKDWSRRNLKIDLHLDTVKIFGNEEMLSHLWINLIDNAIK 252

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYY 185
                G+++I+ + + ++   ++  NG      E    F +   G+       + +    
Sbjct: 253 YAHDNGRISITCEKTLSDIRVAITDNGKGMDNTELKHIFDKFYQGDTSHASQGNGLGLSI 312

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +      ++  E    +    +  L 
Sbjct: 313 VKRIVDLYNGKISVESSPGYGATFTVYLP 341


>gi|260435337|ref|ZP_05789307.1| adaptive-response sensory-kinase SasA [Synechococcus sp. WH 8109]
 gi|260413211|gb|EEX06507.1| adaptive-response sensory-kinase SasA [Synechococcus sp. WH 8109]
          Length = 383

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/231 (8%), Positives = 68/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + +     +  +     L   + H++ +P+ A   +L+         +   +    +L  
Sbjct: 132 LRQENETLIDRVSAQERLLRMVAHELRTPLTAAALALQSQKLGQIDMDRFQDVITRRLQE 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           + ++S  +                     +    I ++ + ++  +  ++        + 
Sbjct: 192 MEALSKDLLEVGTTRWETLFNPQRLDLASVSAEVILELEKLWLGRNVEIKTDIPADLPKV 251

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A      GG +++++   +      S+  +G      E+    
Sbjct: 252 FADQRRMRQVLLNLLENALKYTNDGGHISLTMLHRTSQRVEVSVCDSGPGIPETEQQRIF 311

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++           + +       +   +  ++            +  + 
Sbjct: 312 LDRVRLPQTSDQTTGYGVGLSVCRRIVEVHGGKIWVVSDPGEGACFTFTVP 362


>gi|261823303|ref|YP_003261409.1| osmolarity sensor protein [Pectobacterium wasabiae WPP163]
 gi|261607316|gb|ACX89802.1| integral membrane sensor signal transduction histidine kinase
           [Pectobacterium wasabiae WPP163]
          Length = 453

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 67/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGKEDDYLAESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    +G++      +         +        S  
Sbjct: 277 CNAIIEQFLDYLRTGQEMQTEVADLNAIMGEVVASESGYERQIDSEFATGELLVRISSLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171
             +  +NL + A        KV+   +       F ++ +G      +    F   V G+
Sbjct: 337 IKRAAMNLVVNAARYGNGWIKVSTGRELQ--RVWFQVEDDGEGIATDQLQHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T     +    V  +   +   L     +   + + A L 
Sbjct: 395 SARTTSGTGLGLAIVQRIIDAHNGVLDVGTSERGGLCVRAYLP 437


>gi|256425249|ref|YP_003125902.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
 gi|256040157|gb|ACU63701.1| multi-sensor hybrid histidine kinase [Chitinophaga pinensis DSM
           2588]
          Length = 673

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 63/220 (28%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-------------- 65
           + + H+I +P+  I     LL+E  ++ +    I +   S+ I +               
Sbjct: 169 ASMSHEIRTPLNVIVGMTHLLEETNLDPKQRDYINILKHSSGILMGLISDILDLSKIEAG 228

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--AKILLNLF 123
            +++        + +  L    ++      V     +    +   +  +    +IL+NL 
Sbjct: 229 ELQVNQREFNLTELVQSLRHTFELKIGQRPVSISASIDPQLKTWLVGDDMLLNQILMNLL 288

Query: 124 MVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFP-----EKFTQIVDGNVES 174
             A      G           Q+ K    F +   G   +        +  +  +  +  
Sbjct: 289 GNAEKFTREGEIAINVQLDSWQEDKCWVTFQVCDTGIGIQKDKLELIFQNYKQAEQEIRE 348

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       L       ++ E  D  +   S  L 
Sbjct: 349 NYGGTGLGLAISKQLVELQGGSIVVEEADGFSTCFSFTLP 388


>gi|256823308|ref|YP_003147271.1| PAS/PAC sensor signal transduction histidine kinase [Kangiella
           koreensis DSM 16069]
 gi|256796847|gb|ACV27503.1| PAS/PAC sensor signal transduction histidine kinase [Kangiella
           koreensis DSM 16069]
          Length = 428

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 63/220 (28%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-------------GIEDEVMQLIRLSSMSAIIRL 64
             + + H++ +P+  I   LE+LD                +  + + +  L     ++  
Sbjct: 209 FVANVSHELRTPLTVITGYLEMLDPENNPQLESVAKPLQMMHQQALNMGHLVDDLLLLSK 268

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
              +        VD  + L  I           +   +  T    +L     ++      
Sbjct: 269 LDAKAEENGKQEVDINLMLDSICAEARSLSGEKEHQILFHTHTNANLYGSEKQLRSAFSN 328

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
               A       G++ I  ++  +  I  ++ NG      E   ++ +           +
Sbjct: 329 LIFNAVRYTQSKGRIDIFWKEDDSNLILEVQDNGPGI-AEEHIPRLTERFYRVDSGRNRS 387

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +   +  +L  +         S + EK
Sbjct: 388 QGGTGLGLAIVKHVLEGHNGKLKIQSEIGKGSTFSCVFEK 427


>gi|168704913|ref|ZP_02737190.1| two-component system sensory histidine kinase [Gemmata
           obscuriglobus UQM 2246]
          Length = 545

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 62/240 (25%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRL 55
           AK            +   + + H++ +P+  I    E+L E    D        +Q +  
Sbjct: 306 AKEAAEEADRTK--SGFLATVSHELRTPLTTIIGYSEMLLEQAAVDNLPQYTADLQQVHS 363

Query: 56  SSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQVSWTG 106
           +    +      +  +    G ++          +I D +          + R+++    
Sbjct: 364 AGQHLLALINDILDFSKIEAGKLEIANDPYAPASLIHDLMVSVEPLAKKNNNRIELDCPP 423

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLARF 160
           +      +  +I   +  +   +        + V   +           ++   G     
Sbjct: 424 DLGRAMGDPTRIRQCVLNLVGNACKFTRDGLVKVTARRAPVSGVDSVQVAVSDTGIGM-T 482

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE+  ++     +             +       L      ++            +  ++
Sbjct: 483 PEQVGRLFQAFTQVDSTAGRKFGGTGLGLAISQRLCAAMGGQITVRSEPGKGSTFTMTIK 542


>gi|157693565|ref|YP_001488027.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
 gi|157682323|gb|ABV63467.1| sensor histidine kinase [Bacillus pumilus SAFR-032]
          Length = 430

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 60/229 (26%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEV---- 49
           A+     + S  L  V+ L + + H++ +P+  +   ++LL       E     +     
Sbjct: 197 AQMRTQLVQSEKLTIVSELAASVAHEVRNPLTVVRGFIQLLFSSENTKEPAANKDYKNLV 256

Query: 50  ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +   +    S +   K              L     +     +F +V     +    
Sbjct: 257 LSELDRAQDIITSYLDIAKQNYYQIESLNLSKLLEECASLMTSYANFKSVTIHQSIEPDL 316

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFT 165
                  +  ++++NL   A  + P            +N         NG      +   
Sbjct: 317 YIQGDETKIKQVMINLIKNAIEAAPEHEGKIELFASKENHKICIYFVDNGVGMTESQ-MK 375

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +           +       +   +   +  +        ++    
Sbjct: 376 KLGEPYYTLKNKGTGLGLTVTFSIIENHHGTIRFKSSLQSGTTVTVKFP 424


>gi|161521751|ref|YP_001585178.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189352086|ref|YP_001947713.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
 gi|160345801|gb|ABX18886.1| integral membrane sensor hybrid histidine kinase [Burkholderia
           multivorans ATCC 17616]
 gi|189336108|dbj|BAG45177.1| two-component system capsular synthesis sensor histidine kinase
           [Burkholderia multivorans ATCC 17616]
          Length = 1001

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 56/246 (22%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L    + A           + + H+I +P+ AI  +LEL+    +     + +
Sbjct: 499 RKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAPTERRRL 558

Query: 54  RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97
              + S+                            D    L DI        +       
Sbjct: 559 DTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLELT 618

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKI 153
            RV        +       +I+ NL   A     RG     + +             +  
Sbjct: 619 CRVAPELADGYVGDPVRLRQIVSNLVDNAIKFTERGSVSIDAQRVVRGAGGARVEIRVAD 678

Query: 154 NGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G         T                    +       +A      LL +  +     
Sbjct: 679 TGIGIPADSLPTLFDVYIQADASIYRRFGGTGLGLPLCRRIATLMHGDLLVDSREGEGTT 738

Query: 209 LSALLE 214
           +   L 
Sbjct: 739 MCVTLP 744


>gi|121594707|ref|YP_986603.1| multi-sensor signal transduction histidine kinase [Acidovorax sp.
           JS42]
 gi|120606787|gb|ABM42527.1| multi-sensor signal transduction histidine kinase [Acidovorax sp.
           JS42]
          Length = 465

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 65/247 (26%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +++++     +  +     + + H+I +P+  +   +E L             ++++   
Sbjct: 192 LSRDVTALEQAEAMRRDFVANVSHEIRTPLTVLMGFVETLQTLQLSNEERARYLRMMSQQ 251

Query: 57  SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           ++     ++ +                    +  +      G     +       K  Q+
Sbjct: 252 AVRMQNLVQDLLTLSRLEGSPPPSMHEWVAVSTLLRRCEDEGRALSALLTQNQPGKLHQI 311

Query: 103 SWTGEKIDLSRERAK--------ILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKI 153
           ++   +   +  +           L NL   A    P G         +      F ++ 
Sbjct: 312 TFPTAEAAQAAGQVAGNAAELQSALANLVNNAVRYTPPGGSITVAWDVEPDGSARFVVRD 371

Query: 154 NGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           +G     PE   +I +                 +    V  +   +   L    +     
Sbjct: 372 SGPGI-EPEHLPRITERFYRVDRSRSRDTGGTGLGLAIVKHVVQRHGAALQVASVVGQGS 430

Query: 208 VLSALLE 214
             + +  
Sbjct: 431 TFTVVFP 437


>gi|46581335|ref|YP_012143.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601486|ref|YP_965886.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|46450757|gb|AAS97403.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561715|gb|ABM27459.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|311234995|gb|ADP87849.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 733

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 63/230 (27%), Gaps = 22/230 (9%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
           +    +    + A   +  RI H+I +P+  I  S + L+       +  +  +   LI 
Sbjct: 505 SELERMQ--RMAAWREVARRIAHEIKNPLTPIKLSAQRLERKFGPRVDDPVFGQCTALIV 562

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWTGEKIDL 111
                    ++                 +  + + +             QV        +
Sbjct: 563 KQVEHLQQMVQEFSTFAKLPEVTPRAGDITPLLEEVTGLFRHGHSRIAWQVDIAPALPPV 622

Query: 112 SRER---AKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             +     +  +N+   A  +L         V  S    +      +  NG      E+ 
Sbjct: 623 RMDGEALHRAFINILTNAIEALEGTATPSINVQASHDAERARVRVEIADNGPGLTPEERS 682

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +    S      +    V  + +++   +          V++  L 
Sbjct: 683 -RMFEPYFTSKKGGTGLGLSIVRSIVNDHGGHVRAAGAPGGGTVVTVELP 731


>gi|87309428|ref|ZP_01091563.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87287736|gb|EAQ79635.1| two-component sensor histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 499

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 61/222 (27%), Gaps = 24/222 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL- 69
           A   S + H++ +P+  I   +ELL     ++    DE +Q+I   +      +  +   
Sbjct: 270 AEFVSAVSHEMKTPLAGIKAYVELLADGEAEDEQTRDEFLQVINSQADRLQRLIDNLLNL 329

Query: 70  -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKI 118
                               L +  +++           +S                 + 
Sbjct: 330 ARIEAGVVNVNKKPRSLNELLEEAFRIVHPTAEQKNITLISDLSPMYLGVLVDRDMIMQA 389

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--- 175
            +NL   A    P  GKVT+  +    E +F ++  G     PE   ++ +         
Sbjct: 390 AINLLSNALKYTPDNGKVTLRSRLQDREVVFEVEDTGVGL-SPEDCDRVFEKFYRVKKDQ 448

Query: 176 --IDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALLE 214
                  +       +  + +   L               L 
Sbjct: 449 KMASGTGLGLPLAKHIVEDVHGGELNVTSESGVGSTFRIRLP 490


>gi|219670543|ref|YP_002460978.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
 gi|219540803|gb|ACL22542.1| multi-sensor hybrid histidine kinase [Desulfitobacterium hafniense
           DCB-2]
          Length = 896

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 62/237 (26%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +PI  I   ++L     +E    + ++++   A 
Sbjct: 389 AKEKAEAANRAK--SEFLANMSHEIRTPINGIIGMIDLTLLTSLEKTQRENLKIAKNCAY 446

Query: 62  IRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
              K +     ++              +    +  I +                +  +  
Sbjct: 447 SLFKIINDILDFSKIEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLP 506

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L NL   A     RG       +   +    +  F++   G      
Sbjct: 507 DYYKGDPERIKQVLNNLLSNALKFTERGEVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEE 566

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           ++          DG++        +       L      R+  E           +L
Sbjct: 567 DQLHLFEEFNQVDGSITRKYGGTGLGLAISRKLVEMMGGRIWVESEKGKGSSFGVVL 623


>gi|332522288|ref|ZP_08398540.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332313552|gb|EGJ26537.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 410

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 62/223 (27%), Gaps = 21/223 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRL 69
             L     S   H++ +P+ +I    E + E+  ++  +  + + +    ++     +  
Sbjct: 181 EKLNMDFVSNASHELRTPVTSIKGFAETIKEMSQDEIELKAEFLDIIYKESLRLEHIVEH 240

Query: 70  A------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                               D L  + +  +   D        +++            ++
Sbjct: 241 MLTLSKAKNTQLQKTQFSVNDFLHYIANSMRHQLDQKKQSLYFELTQDVIIETDKYLLSQ 300

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +LLNL   A      GGK+T+S      +   ++   G   +  E   +I +        
Sbjct: 301 VLLNLLSNAIRYTEEGGKITLSTILDGEKLNVNVCDTGIGIKQMEL-ERIFERFYRVNKG 359

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  L       +            +  L 
Sbjct: 360 RSRQSGGTGLGLSIVKELTQVLGGTVTVRSKLGEGSQFTISLP 402


>gi|326777053|ref|ZP_08236318.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326657386|gb|EGE42232.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 509

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 62/230 (26%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55
           + K +    +  +      + + H++ +P+ AI    E+L+      + M      L+  
Sbjct: 260 LEKKVADMSAREEASRRFVADMSHELRTPLTAITAVAEVLEGEADTLDPMIAPAVHLVVS 319

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +      ++ +     +             +       +          +         
Sbjct: 320 ETRRLNDLVENLMEVTRFDAGTARLVLDTVDVADQVTACIDARAWLDAVNLDAERGMMVR 379

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
              R    IL NL   A         V + V+    + +  ++ +G        P  F +
Sbjct: 380 LDPRRLDVILANLIGNALKHGG--SPVDVRVRTEGEKLVIEVRDHGPGIPEDVLPHVFDR 437

Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +   +     +  AH +   +      D   V    L +
Sbjct: 438 FYKASASRPRSEGSGLGLSIALENAHIHGGDITAANSPDGGAVFELRLPR 487


>gi|293377151|ref|ZP_06623360.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecium PC4.1]
 gi|292644240|gb|EFF62341.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Enterococcus faecium PC4.1]
          Length = 464

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 67/218 (30%), Gaps = 17/218 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   L + I H++ +P+  +  ++E + +    I  E +Q            +  + +  
Sbjct: 245 LRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNIEIIN 304

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLN 121
                 D L         + + +  +   ++      +++  +            ++++N
Sbjct: 305 KIEAKYDHLNKTEFNIYKLIESVIENFASKIESKNLHVEIQGDNINISADKDKMNQVVIN 364

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTI 176
           L   A     + G +  S+  +K+  +  ++ NG           F +      +    +
Sbjct: 365 LLNNAIKFTQKEGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSRSRAL 424

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    V  +   +K  +  +            L 
Sbjct: 425 GGQGIGLAIVKSVIEAHKGSITVKSKLGLGTKFVIKLP 462


>gi|238920517|ref|YP_002934032.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Edwardsiella ictaluri 93-146]
 gi|238870086|gb|ACR69797.1| sensor kinase protein RcsC [Edwardsiella ictaluri 93-146]
          Length = 984

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 66/221 (29%), Gaps = 24/221 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++  + + H++ +P+  I  +L+LL    + +EV +L+   S S+ + LK +     ++ 
Sbjct: 502 SMFLATVSHELRTPLYGIIGNLDLLRTKTLPEEVQRLLGAMSNSSGLLLKIINDILDFSK 561

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +     V  + I                     ++               ++L
Sbjct: 562 IESEQLKIEPGRFVPREVIPHIIGNYLPLVVRKRLTLYCFIEPEVPEALSGDIMRIQQVL 621

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173
            NL   A       G + +  + +     F ++  G      +   ++ D   +      
Sbjct: 622 SNLLSNAIKFTDT-GCIILQARVNDFYLEFRVRDTGLGIPPRDVL-RLFDPFFQVGSGVQ 679

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       L       +  E       + +  L 
Sbjct: 680 RHFHGTGLGLAICEKLVSLMDGDIAVESSPGLGSIFTIRLP 720


>gi|288573468|ref|ZP_06391825.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569209|gb|EFC90766.1| Hpt sensor hybrid histidine kinase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 694

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 50/236 (21%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHN---------------SLELLDEVGI 45
           + ++      +        + + H+I +P+ AI                 +LE++ + G 
Sbjct: 192 LQESEAQLAEANQAKDRFLANVSHEIRTPLNAILGTAAIVRGKSPAEMDRALEVIKDEGH 251

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               +    L           +  A      +   +      +     +     +     
Sbjct: 252 ALLALINDILDLSKMGAGFLDLDEAPFDLFELLEALEGSYRSEAKRKGLDFSLDLSKDIP 311

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFP 161
                      ++L NL   A      G              K    FS+   G      
Sbjct: 312 RWITGDPIRLRQVLSNLLGNAVKFTSSGRVSLTVKSLRSDGDKLTLSFSVFDTGIGI-PR 370

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           E   ++                   +       +       +  E         S 
Sbjct: 371 EVVPRLFKPFSQADGSTSRKYGGTGLGLAISRRIVRAMGGDISVESERGRGSTFSL 426


>gi|225551760|ref|ZP_03772703.1| putative sensory transduction histidine kinase [Borrelia sp. SV1]
 gi|225371555|gb|EEH00982.1| putative sensory transduction histidine kinase [Borrelia sp. SV1]
          Length = 382

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 73/227 (32%), Gaps = 20/227 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAII 62
            + ++         I H+I +P+GAI  +L+LL +   + ++         ++       
Sbjct: 146 RVEALASFTRHARNIAHEIKNPLGAIDINLQLLKKEIEKQKMKNGKAENYFKVIKEEINR 205

Query: 63  RLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             K +         +   +   D         E +       + ++ ++       L  E
Sbjct: 206 VDKIVTEFLLTVRPIKINLQEKDIKQVIGSVCELLNPGLENKNIKLLLNLNKISNILIDE 265

Query: 115 R--AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +   ++++N+   A  +L        K+ I + +  N+   ++K  GN         +I 
Sbjct: 266 KLLKQVIINIVKNAEEALLETKKEIKKIEIFLFEKDNKIHINIKDTGNGI-KDAVKEEIF 324

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +      I       +  E    +  E  +    + +  L K
Sbjct: 325 KPQFSTKEKGSGIGLTISYKIIKELGGEIFVESKEGEGTIFTITLPK 371


>gi|168177679|ref|ZP_02612343.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182671415|gb|EDT83389.1| sensory box histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 615

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            KNI     S     L+    S I H++ +P+  I  +++LL   +E    ++  + ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNNEKQDKYLKL 405

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVS 103
              +    +K +      T                  +       V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      +      GG + ++V+DS       +K  G     
Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNIFVNVKDSGENVYIHVKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +   +  +            L 
Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHNGTVTIKSELGKGTEFIIKLP 584


>gi|149915202|ref|ZP_01903730.1| multi-sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b]
 gi|149810923|gb|EDM70762.1| multi-sensor hybrid histidine kinase [Roseobacter sp. AzwK-3b]
          Length = 766

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 31/236 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62
           + S  + A+  L   + HD  + + AI    +LL    D+   +   +  I  ++  A  
Sbjct: 389 VQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQGDGDYADLVQISQNANRAAA 448

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRER 115
            +  +            ++ L D+   +   +      +VS                R+ 
Sbjct: 449 LVSQLLAYSRKQTLRPEIMDLRDMLADLTHLLNRLVGEKVSLLLRHDPVLARIRADKRQL 508

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARF 160
            ++L+NL + A  ++P+GG++ I  ++                       +   G     
Sbjct: 509 EQVLMNLVVNARDAMPQGGEIRIVTENLLLDEPLRRGRAVVAPGRYVSVVVSDEGVGI-A 567

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P+K  ++ +    +    +   +       +  +    +  E           LL 
Sbjct: 568 PDKLQKVFEPFYSTKRVGEGTGLGLSTAYGIVKQTGGFIFVESAPGQGARFQVLLP 623


>gi|149375577|ref|ZP_01893347.1| periplasmic sensor signal transduction histidine kinase
           [Marinobacter algicola DG893]
 gi|149360282|gb|EDM48736.1| periplasmic sensor signal transduction histidine kinase
           [Marinobacter algicola DG893]
          Length = 493

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           A  I            L +++ HD+ +P+ ++   +E L           +D  + +   
Sbjct: 255 ASQIELLTEKDAQRRQLVAQVSHDLRTPLASMQGYIESLKLRRDRLTAEEQDRFLDIALK 314

Query: 56  SSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTG 106
                   +  +                       + D+ Q   ++         V    
Sbjct: 315 EGRRLSRLVDELFELAALEAREKQPVPEPFPLAELVHDVVQKHGQEASTRQLDFVVDGDP 374

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +      +     ++L NL   A A  P   ++ +    S       +  +G      + 
Sbjct: 375 DLPLAYADLAMTERVLDNLIGNAIAYSPSESRIEVVFGQSDGLPQVCVHDSGPGIPEQDL 434

Query: 164 FTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +        +       +       +  E            L 
Sbjct: 435 PHIFDPFYRGESSGGSGHAGLGLAIARRIMSLQGGDISVENRSSGGASFCIRLP 488


>gi|123444181|ref|YP_001008151.1| osmolarity sensor protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122091142|emb|CAL14025.1| osmolarity sensor protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 450

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 217 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +  V +                
Sbjct: 277 CNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVIAAESGYERVIETDLCEGEVMVDIHPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  +    F   V G+
Sbjct: 337 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A + 
Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 437


>gi|34557246|ref|NP_907061.1| sensory transduction histidine kinase [Wolinella succinogenes DSM
            1740]
 gi|34482962|emb|CAE09961.1| SENSORY TRANSDUCTION HISTIDINE KINASE [Wolinella succinogenes]
          Length = 1555

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 51/217 (23%), Gaps = 23/217 (10%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------------LK 65
            + + H+I +P+ AI     L  +  +       ++    SA                   
Sbjct: 858  ANMSHEIRTPMNAIIGMTYLAQQTDLTPLQRDYLQKIEGSANALLGLINDILDFSKIEAG 917

Query: 66   FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKILLNLF 123
             + +          +  +  + ++      ++  V                  +IL NL 
Sbjct: 918  KLEIECIDFDLHSVIEHVSTLVELKATEKNLEFVVSYDQGMNMNLHGDPLRLGQILTNLA 977

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTID 177
              A      G       +   +   F ++  G      +   ++                
Sbjct: 978  NNAIKFTHEGEVGIYITKQELHRYRFEVRDTGIGLSPGQ-KEKLFRSFSQADTSTTRQYG 1036

Query: 178  SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       L      R+  E  +         +E
Sbjct: 1037 GTGLGLAISKQLVEMMNGRIWVESEEGKGSSFIFEIE 1073


>gi|13473155|ref|NP_104722.1| histidine protein kinase, FixL [Mesorhizobium loti MAFF303099]
 gi|14023903|dbj|BAB50508.1| mlr3659 [Mesorhizobium loti MAFF303099]
          Length = 686

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 64/230 (27%), Gaps = 18/230 (7%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +       +  + A+  L + + H++ +P+  +     LL E           + +R ++
Sbjct: 310 RQREKLHQNEKMAAMGSLLAGVSHELNNPLAVVVAQSTLLHEFASDPQTKVRAEKVRAAA 369

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEK-----I 109
                 +K          +  +   L  + +    +  + A    + +           +
Sbjct: 370 ERCGRIVKSFLSMVRLHPAAQAETDLNQVIRAALEVTAYGARSSGIIIDTDFAPGPLLAM 429

Query: 110 DLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +    ++  N  + +  +L            + +  ++   FS++ NG       +  
Sbjct: 430 ADADHVTQVAANFLINSQHALAGIAGDRLIKVRTFRSDRDNPCFSVEDNGPGIPEAIRNR 489

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +     I       +   +   +  E ++         L 
Sbjct: 490 IFESYFTTKPVGVGTGIGLSISKSIIERHNGNVWFEEVEPRGARFVVQLP 539


>gi|89068864|ref|ZP_01156247.1| C4-dicarboxylate transport sensor protein [Oceanicola granulosus
           HTCC2516]
 gi|89045634|gb|EAR51697.1| C4-dicarboxylate transport sensor protein [Oceanicola granulosus
           HTCC2516]
          Length = 576

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 65/236 (27%), Gaps = 27/236 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM---- 50
           + K     + +  L AL  + + I H++  P+ AI +  E     L+    +        
Sbjct: 335 LTKAQADLVQAGKLSALGQMSAGISHELNQPLMAIRSFAENGEAFLERGRPDAAATNLAR 394

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             +L R           F R        VD +  +  + ++     A    V + W    
Sbjct: 395 IGELARRMGRIIRNLRAFARQESHPPVDVDLVAVIDTVLEMT-AARARADGVALDWQRPA 453

Query: 109 IDLSRER-----AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFP 161
             +          ++ LNL   A  +        +++           ++   G     P
Sbjct: 454 GPVMVRGGEVRLQQVFLNLVSNALDATAAADTRRVTLTVESAPGRVTLAVADTGPGIADP 513

Query: 162 EKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   +I D    +      +   +       L       +          + +  L
Sbjct: 514 E---RIFDPFYSTKEVGEAEGMGLGLSISYGLVQGFGGAIRGRNRPGGGALFTVEL 566


>gi|311031849|ref|ZP_07709939.1| PAS/PAC sensor signal transduction histidine kinase [Bacillus sp.
           m3-13]
          Length = 517

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 76/224 (33%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            K   +  ++  L     + + + H+I +P+  +   ++L  E G  +   +++      
Sbjct: 292 TKTESYIQNAEKLAIVGQMAAGVAHEIKNPLTTLKGFIQLSKEGGPSNAFPEIMLKEIER 351

Query: 60  AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                       +       +    D +  +  +         V+               
Sbjct: 352 IDQITNEFLVLSRPTVQKKDWQDVRDLISEIEVLLSSFAIIKNVEILYNYQDVKPIFCDG 411

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171
            +  ++ +NL   +  S+ + GK+TISV+    N+ + S   +GN     +   ++    
Sbjct: 412 NQMKQVFINLVKNSVESVEQNGKITISVKPQGDNQLLVSFNDDGNG-FPDQILHRMGQPF 470

Query: 172 VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALLE 214
           + +  D + +       +  E +  +L  +   +   ++  +L 
Sbjct: 471 LTTKKDGNGLGLMICKRVVEEIHNGKLCIQNNANGGAMVDIILP 514


>gi|270294242|ref|ZP_06200444.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275709|gb|EFA21569.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 508

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      + +    L  + + H+I +P+ AI     +L +   +++  + I +   +  
Sbjct: 274 AKEKAEEANRLKSAFL--ANMSHEIRTPLNAIVGFSSILSDYIQDEDTKEYIHIIEENTQ 331

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +    G      +L  +  + ++        + +  +    
Sbjct: 332 LLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDEMQTMAKLKLPSEVSIRLLPGADYCI 391

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              + +   ++L N    A      G          ++   F ++  G      ++    
Sbjct: 392 IHTVPKRVRQVLNNYLSNALKHTEEGFIDIGYHLPQEDRIRFFVRDTGCGIPPEKQKDVF 451

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S      +      ++A +   ++    I          + 
Sbjct: 452 ERFVKLNSFKQGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIP 499


>gi|255525138|ref|ZP_05392082.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296188105|ref|ZP_06856497.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|255511192|gb|EET87488.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|296047231|gb|EFG86673.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 305

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 59/234 (25%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG------------IEDE 48
           ++        +     L+ S + HD+ +P+ ++   LE ++                 D+
Sbjct: 72  QSQLIKQKQSEQAYKGLMAS-LSHDVKTPLASLVGYLEAIESKIVVGEEKDEYIHVAYDK 130

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSW 104
              L                    +    D        + D   ++E+     +      
Sbjct: 131 SQHLKHFVENLFEWVKLDSGEQIFHFEIFDLNELTRNIIADWIPILENSHFEYEFDIPET 190

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                  +    +IL NL                  ++ + +    +  NG         
Sbjct: 191 EYSMRIDATAYTRILNNLLQNIITHSEGDNMSLCIFEN-EQQAKIVITDNGKGISSDNLS 249

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F ++   +       + +       L   +K  +    I       + LL K
Sbjct: 250 LIFERMYQCDHSRAAKGNGLGLSISKELVSAHKGTITAASILGCGTTFTILLPK 303


>gi|239907994|ref|YP_002954735.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797860|dbj|BAH76849.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1093

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 60/240 (25%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50
           M + +  +  + +      +   S + H+I +P+  I   +++L       +     + +
Sbjct: 703 MEQALRRSKEAAESANRAKSEFLSTMSHEIRTPMNTILGMVDVLAGTSLTSDQTHAVKSI 762

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------DKRV 100
           +L     +  +  +  +         ++               +               +
Sbjct: 763 ELAGAGLLGLLNDILDLSQIEAGGMVIEEKSCDIVELTTQLADMMRPDADRKGLELRLEI 822

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGN 156
           +               +IL+NL   A     +G  V    +            +++  G 
Sbjct: 823 RGDLPPRLFCCPDRIRQILVNLLGNAIKFTQQGHVVLEVASTPSLTDGPRLRLAVRDTGI 882

Query: 157 LARFPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    F +      +         +       LA     R+  E         + 
Sbjct: 883 GIPADKQAVIFDRFTQINASANRQFGGVGLGLAICKKLAELMGGRIAVESAPGQGSTFTL 942


>gi|229094988|ref|ZP_04225985.1| hypothetical protein bcere0020_2470 [Bacillus cereus Rock3-29]
 gi|229101089|ref|ZP_04231856.1| hypothetical protein bcere0019_2770 [Bacillus cereus Rock3-28]
 gi|229113941|ref|ZP_04243368.1| hypothetical protein bcere0017_2480 [Bacillus cereus Rock1-3]
 gi|228669515|gb|EEL24930.1| hypothetical protein bcere0017_2480 [Bacillus cereus Rock1-3]
 gi|228682332|gb|EEL36442.1| hypothetical protein bcere0019_2770 [Bacillus cereus Rock3-28]
 gi|228688432|gb|EEL42313.1| hypothetical protein bcere0020_2470 [Bacillus cereus Rock3-29]
          Length = 281

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 62/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K         +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 39  LEKVRIEAKRYEESRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 98

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L D    +       + +   
Sbjct: 99  KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREALIDFLPELSKHNIELQVLIPE 158

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            T   I       +I+ NL   A      G  V I + ++  E    +   G      + 
Sbjct: 159 STCPIIADHLSLMRIIGNLIKNAIYYGKDGKTVGIELLETNTEYELLIWDKGPGIPKHDL 218

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                          S+     +       L   N   +  E I          + K
Sbjct: 219 QNIFERMYRSEQSRTSSFGGSGLGLSISKALVERNGGHIWVESIPWKRTTFGFSIPK 275


>gi|313125850|ref|YP_004036120.1| fused histidine kinase with gaf domain/response regulator receiver
           [Halogeometricum borinquense DSM 11551]
 gi|312292215|gb|ADQ66675.1| fused histidine kinase with GAF domain/response regulator receiver
           [Halogeometricum borinquense DSM 11551]
          Length = 665

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 57/239 (23%), Gaps = 31/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
             N      +  L     S + HD+ +P+      +EL       +E +  +  +     
Sbjct: 421 QTNEKLRAQNEKL-GQFASIVSHDLRNPLNVARGHIELAQNECT-NEHLDAVERAHDRME 478

Query: 62  IRLKFMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
             ++ +         +   + +      EQ  E        + V      +       ++
Sbjct: 479 TLIENLLTLARSEERIGDTELVNLAELAEQCWETVETGTASLDVETDRTLLADEPRLRQL 538

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENI-------------------------FSLKI 153
           L NL   +        +         +                            F ++ 
Sbjct: 539 LENLMRNSVEHGSTSNQSNPGHAADADAADSQRQSKKVERGAESVTVRVGDVEGGFYVED 598

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +G      E+   + D +  +  +   +    V  +A  +   +               
Sbjct: 599 DGPGIPPDER-ASVFDSSHTTKTEGTGLGLAIVERIAKGHGWSVCVTEGTGGGARFEFT 656


>gi|189466377|ref|ZP_03015162.1| hypothetical protein BACINT_02752 [Bacteroides intestinalis DSM
            17393]
 gi|189434641|gb|EDV03626.1| hypothetical protein BACINT_02752 [Bacteroides intestinalis DSM
            17393]
          Length = 1352

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 65/233 (27%), Gaps = 23/233 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSA 60
             K     ++ M L     + I H+  +P+  I   +E LL    +   V + +     +A
Sbjct: 802  EKERIEEVNKMKLR--FFTNISHEFRTPLTLIVGQIEMLLQSEKLSLSVYRRLHSIHKNA 859

Query: 61   IIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +     +     +                             E     +         EK
Sbjct: 860  MNLRFLITELLDFRKQEQGFMKLKVECVDIVPFLEDVYRSFWELARKRNIVYTFEHPNEK 919

Query: 109  IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
            +++  +  ++   +F     A      G  V +SV+  +     ++   G      +   
Sbjct: 920  MEVWFDPVQMQKAVFNLLSNAFKYTSDGKSVKVSVRKQQQIMEITVSDTGCGIPQDDLSR 979

Query: 163  KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             F +   GN   +  I    I       +   ++  +  E + +        L
Sbjct: 980  IFERFYQGNEKQQRGIAGSGIGLALTKGIIEAHRGDIAVESVLEEGSSFKIQL 1032


>gi|170750082|ref|YP_001756342.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656604|gb|ACB25659.1| multi-sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 1124

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 69/248 (27%), Gaps = 37/248 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRLSSMSA 60
           A+      S+    +   + + H+I +P+  I    +LL +    ++E  + + L   S 
Sbjct: 595 ARTEAERASAAK--SEFLAAMSHEIRTPLNGILGYADLLLDGDAIQNEDRRRLELIQSSG 652

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSW 104
                     +  +    G +        +  +++  +++            + R+  + 
Sbjct: 653 AALLTVVNDILDFSKIEAGELTLDPVTFPLVSIVDGTVSIVRGSALRSGLAIEARIDPAL 712

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---------SVQDSKNENIFSLKING 155
               +  +    ++LLNL   A    P G    I               +   FS+   G
Sbjct: 713 PTFVVGDAGRLRQVLLNLLNNAVKFTPEGSVTVIVEREDAGGAPDGRPGDTVRFSVVDTG 772

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV- 208
                 +   ++          +        +       L       +  E  +      
Sbjct: 773 IGIAPAQ-QDRLFKRFSQVDGSISRRFGGTGLGLAISRHLVTLMGGEIGVESREGAGSTF 831

Query: 209 -LSALLEK 215
               +L +
Sbjct: 832 WFRLVLPR 839


>gi|170758751|ref|YP_001785673.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169405740|gb|ACA54151.1| sensory box histidine kinase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 615

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            KNI     S     L+    S I H++ +P+  I  +++LL   +E   +++  + ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNDEKQDKYLKL 405

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVS 103
              +    +K +      T                  +       V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      +      GG + ++V+DS       +K  G     
Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNSIKFTNPGGNIFVNVKDSGENVYIHVKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +K  +  +            L 
Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVTIKSELGKGTEFIIKLP 584


>gi|160890194|ref|ZP_02071197.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|317481456|ref|ZP_07940522.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156860582|gb|EDO54013.1| hypothetical protein BACUNI_02634 [Bacteroides uniformis ATCC 8492]
 gi|316902366|gb|EFV24254.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 508

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 65/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      + +    L  + + H+I +P+ AI     +L +   +++  + I +   +  
Sbjct: 274 AKEKAEEANRLKSAFL--ANMSHEIRTPLNAIVGFSSILSDYIQDEDTKEYIHIIEENTQ 331

Query: 62  IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L+               +    G      +L  +  + ++        + +  +    
Sbjct: 332 LLLQLINDILDLSRIEAGILEFTEGDMDVNKTLDEMQTMAKLKLPSEVSIRLLPGADYCI 391

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              + +   ++L N    A      G          ++   F ++  G      ++    
Sbjct: 392 IHTVPKRVRQVLNNYLSNALKHTEEGFIDIGYHLPQEDRIRFFVRDTGCGIPPEKQKDVF 451

Query: 168 VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  S      +      ++A +   ++    I          + 
Sbjct: 452 ERFVKLNSFKQGTGLGLSICTMIAEKMNGKVGVSSIPGKGSEFWFEIP 499


>gi|148976529|ref|ZP_01813225.1| nitrogen regulation protein NR(II) [Vibrionales bacterium SWAT-3]
 gi|145964105|gb|EDK29362.1| nitrogen regulation protein NR(II) [Vibrionales bacterium SWAT-3]
          Length = 336

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL ++  +  + +  ++    A
Sbjct: 105 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLGKMLPDQSLNEYTQIIIEQA 163

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +      +  + 
Sbjct: 164 DRLRALVDRLLGPQKLGTKSEENLHQILEKVRQLVELESGSTLAIERDYDPSLPPIVMDS 223

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           A++   +  +   +                    +  I  Q  K      +  NG     
Sbjct: 224 AQVEQAMLNIVSNAAQILKAQDSGKITIRTRTVHQANIHGQRHKLAARIEISDNGPGI-P 282

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V        +       L  ++  ++  E    +    +  L 
Sbjct: 283 DELKDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGN-TTFTIYLP 335


>gi|150399196|ref|YP_001322963.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
 gi|150011899|gb|ABR54351.1| integral membrane sensor signal transduction histidine kinase
           [Methanococcus vannielii SB]
          Length = 613

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 60/227 (26%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLSSMSAIIRLKF 66
               L   L S + H++ +P+ +I   LELL E       +   + I +   +     + 
Sbjct: 384 DRDKLKTELLSAVSHELRTPLTSIKGYLELLREGAAGKLTETQKEFIEVVYENVNRLRRH 443

Query: 67  MRLAFGYTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVSWTGEKID-LSR 113
           +               +              I+ V       +  +        I     
Sbjct: 444 VENIKDLVKVDSLENKVKLDGVNIKNAVSEIIDNVKNFANEKNVVLLQDIDNVVIKGDRI 503

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
           +  ++L NL   A +      KVT+            +   G      E    F      
Sbjct: 504 KINQVLENLVENAISFTKPYSKVTVGGYTEGENFHLEVTDQGVGIPKEELNNIFKDFYSE 563

Query: 171 NVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  S +++             +   ++  +  E        +  LL 
Sbjct: 564 SFSSKVENVGDPNFGLIACKKIIEAHEGSIWVESRVGKGTTIHVLLP 610


>gi|114324572|gb|ABI63593.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|224798968|gb|ACN62989.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155
                 +  S    +I+LNL   A                             F++   G
Sbjct: 848 KVPDYVVGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|94271292|ref|ZP_01291927.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
 gi|93450492|gb|EAT01658.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
          Length = 461

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 75/222 (33%), Gaps = 12/222 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSM 58
            +     L +  + AL  L + + H+I +P+ +I    +    +  +    ++++ ++  
Sbjct: 238 EETYRQMLQAEKMTALGRLSAGLAHEIRNPLTSIKALFQAFRNQPEVNRADIEMVLVAVN 297

Query: 59  SAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                +                      L  +  + Q       ++  ++++        
Sbjct: 298 QMDELVTKFLGFARSDNFQSSEIYPNAILKQILRLVQFQLKNQQIEAVLELTKLPPLKGD 357

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           S    + LLNL M A  ++P GG++T+S +  +++    ++  G          ++ D  
Sbjct: 358 SAMIRQALLNLVMNAIEAMPAGGQLTLSSRRLEDQVEIGVRDTGGGI-PEAIRHKVFDPF 416

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +  +   +    V  +A  +   +            +  L
Sbjct: 417 FTTKTEGTGLGLGIVYNIAQLHNGTVSFVTGP-AGTTFTLKL 457


>gi|315923456|ref|ZP_07919696.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|313697331|gb|EFS34166.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
          Length = 419

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
               ++S+  L +   + + H++ +P+ AI     L+              +I  ++   
Sbjct: 179 EREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASSEEERKMYADVIAENNERL 238

Query: 61  IIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +                        D+   L ++E + +  +       V     +  + 
Sbjct: 239 LRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMM 298

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L NL   A      G            E  F +   G      E+  +I 
Sbjct: 299 YSERERIIQVLSNLLHNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGI-PKEEQKKIF 357

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +  +    +       +       L  +   +     S +L +
Sbjct: 358 SRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLPR 406


>gi|299134016|ref|ZP_07027209.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
 gi|298590763|gb|EFI50965.1| integral membrane sensor signal transduction histidine kinase
           [Afipia sp. 1NLS2]
          Length = 433

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/239 (7%), Positives = 64/239 (26%), Gaps = 27/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           ++      + ++ A   +   H++ +P+ A+   ++ L     D+    +  + ++   +
Sbjct: 187 RDQTPLRRAEEMRADFVANASHELRTPLAALSGFIDTLQGPARDDPKARERFLGIMHAQA 246

Query: 58  MSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                 +  +                      I    I+ +          ++  +    
Sbjct: 247 TRMARLIDDLLSLSRVELSAHVRPEAKVDLLAILRQVIDGLEVLANERGVVIETQFPDVP 306

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARF 160
           + ++ +     ++  NL          GG+        +  +   E   +++  G     
Sbjct: 307 VFIAGDTEELLRVFENLIENGLKYGASGGRVTVSLSRTAPDEGPAEIRVTVRDYGPGIAP 366

Query: 161 PEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    +           +    V  +   +  RLL E +       +    
Sbjct: 367 EHLPRLTERFYRTDVGDSRAQGGTGLGLSLVKHIVSRHGGRLLIESVFGKGATFTVCFP 425


>gi|299147530|ref|ZP_07040594.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
 gi|298514317|gb|EFI38202.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_23]
          Length = 422

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
               ++S+  L +   + + H++ +P+ AI     L+              +I  ++   
Sbjct: 182 EREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASSEEERKMYADVIAENNERL 241

Query: 61  IIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +                        D+   L ++E + +  +       V     +  + 
Sbjct: 242 LRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMM 301

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L NL   A      G            E  F +   G      E+  +I 
Sbjct: 302 YSERERIIQVLSNLLHNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGI-PKEEQKKIF 360

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +  +    +       +       L  +   +     S +L +
Sbjct: 361 SRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLPR 409


>gi|293373400|ref|ZP_06619755.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631538|gb|EFF50161.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 422

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
               ++S+  L +   + + H++ +P+ AI     L+              +I  ++   
Sbjct: 182 EREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASSEEERKMYADVIAENNERL 241

Query: 61  IIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +                        D+   L ++E + +  +       V     +  + 
Sbjct: 242 LRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMM 301

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L NL   A      G            E  F +   G      E+  +I 
Sbjct: 302 YSERERIIQVLSNLLHNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGI-PKEEQKKIF 360

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +  +    +       +       L  +   +     S +L +
Sbjct: 361 SRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLPR 409


>gi|259415385|ref|ZP_05739306.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259348615|gb|EEW60377.1| PAS/PAC sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 756

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 52/244 (21%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L    L A           + + H+  +P+  +    ++L    + ++     
Sbjct: 358 TKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMTQMLQATDLSEDQRLYA 417

Query: 54  RLSSMSA-------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------- 97
                S+          L   R+        +    L    +     ++           
Sbjct: 418 DTILSSSRALLSLINDVLDLSRMNAAGVSLFNVDFDLHACVRDTARLLSSQAEEKQLALG 477

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKIN 154
             +            R   +IL+NL   A      G             +     +++  
Sbjct: 478 VEIDPDVPVWVTGDDRRLRQILVNLVGNAVKFTTSGSVTIRLSAALSGDEIALSIAVEDT 537

Query: 155 GNLARFP---EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G           F +    +           +       LA      +            
Sbjct: 538 GIGIPADKLDCIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDIHVTSTPGEGSCF 597

Query: 210 SALL 213
           +  L
Sbjct: 598 TLTL 601


>gi|257458984|ref|ZP_05624103.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
 gi|257443369|gb|EEV18493.1| sensor histidine kinase/response regulator [Campylobacter gracilis
           RM3268]
          Length = 1517

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 27/231 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +    ++  + + H+I +P+  I    ELL    +++E    +     S+   L  +  
Sbjct: 403 DANKAKSIFLANMSHEIRTPLNGIIGFTELLKNTDLDEEKRDYVDTIEKSSENLLTIINN 462

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSR 113
               +    + + L DI             + V                +          
Sbjct: 463 ILDVSKIESNKVELEDILFNPIQDFESAVEIYVAKAAEKNIDILLYIDPTLVHHLYGDIT 522

Query: 114 ERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  ++L+NL   A    P  G          S    +    FS++  G      +     
Sbjct: 523 KIKEVLINLMSNAVKFTPEHGTIVVEILREPSKAPGEAIVTFSVEDTGIGISEDKLANVF 582

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +              +              +L  +            L
Sbjct: 583 NAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLQVKSTVGKGTRFYFTL 633


>gi|237717539|ref|ZP_04548020.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
 gi|229453169|gb|EEO58960.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_2_4]
          Length = 419

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
               ++S+  L +   + + H++ +P+ AI     L+              +I  ++   
Sbjct: 179 EREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASSEEERKMYADVIAENNERL 238

Query: 61  IIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +                        D+   L ++E + +  +       V     +  + 
Sbjct: 239 LRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMM 298

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L NL   A      G            E  F +   G      E+  +I 
Sbjct: 299 YSERERIIQVLSNLLHNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGI-PKEEQKKIF 357

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +  +    +       +       L  +   +     S +L +
Sbjct: 358 SRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLPR 406


>gi|298530456|ref|ZP_07017858.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509830|gb|EFI33734.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1033

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 60/238 (25%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S     +   + + H+I +P+  I  +LE++     ++E  +L++++  SA 
Sbjct: 512 AKEQAEAASKAK--SEFLANMSHEIRTPMAGIMGALEMVSARTDDEESRRLMKMTLESAR 569

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WT 105
              + +      +      + +   E   +        +                     
Sbjct: 570 SLQQIINDILDLSKVEAGKLEIEHQEFDPQSLFKRVMDLYSIQAGEKNIELQLDTAPGIP 629

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFP 161
                      ++L NL   A     +G  +           K    F ++  G   +  
Sbjct: 630 RRLCGDQYRLEQVLRNLVSNAVKFTSQGRVILRVRPVQAASGKARLNFEVEDTGVGIKED 689

Query: 162 EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                   +       L       +  + I     + S  L 
Sbjct: 690 FLPRLFDSFTQADSTYGKKHQGTGLGLAISNRLVQMMGGDIQAQSIPGAGSIFSFSLP 747


>gi|224370332|ref|YP_002604496.1| predicted fusion protein, periplasmic substrate-binding protein
           (N-terminal) / sensory box regulatory protein
           (C-terminal) [Desulfobacterium autotrophicum HRM2]
 gi|223693049|gb|ACN16332.1| predicted fusion protein, periplasmic substrate-binding protein
           (N-terminal) / sensory box regulatory protein
           (C-terminal) [Desulfobacterium autotrophicum HRM2]
          Length = 926

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 52/242 (21%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
           M +       +  L A+  L   I HD  + +  I    +L +         +       
Sbjct: 541 MKQIEAQLQQAQKLEAVGVLAGGIAHDFNNILSGIFGYSKLAERHIDNPTKAKSHIRQII 600

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEK 108
              + ++      L F R        +     + +I  +I   I     +   +      
Sbjct: 601 KGSQRAAELIQQILAFSRKTEPKMQVLILSTVVKEILDLIRSSIPSSIVICEKIVCEKPI 660

Query: 109 IDLSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKI 153
           +       + L+NL   A  ++                      I            +  
Sbjct: 661 LGDPVRIHQALMNLCTNAFQAMVSTGVLTVEVDMMDVFHSANGPIPNMVPGQYLTVKVMD 720

Query: 154 NGNLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            GN                         +    V  +  E+   +  +            
Sbjct: 721 TGNGMDPKTLNKIFDPYFTTKKPGEGTGLGLALVYGVVEEHGGYVTVDSGPGQGSAFQLF 780

Query: 213 LE 214
             
Sbjct: 781 FP 782


>gi|218258479|ref|ZP_03474846.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225451|gb|EEC98101.1| hypothetical protein PRABACTJOHN_00501 [Parabacteroides johnsonii
           DSM 18315]
          Length = 720

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/233 (8%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +     +     +  L +   + + H+I +P+ AI     +L E   ++E  + +++ +
Sbjct: 486 TRQSELEIQKVREADKLKSAFLANMSHEIRTPLNAIIGFSNILAETDDKEEKEEFVKIIN 545

Query: 58  MSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
            ++ + L+ +     ++                     +  QV    +     +   +  
Sbjct: 546 KNSDLLLRLITDILDFSKIESGILDYSLADTSLKEIFHEQYQVHALKMPEKVSLICDFDA 605

Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +   +++ NL   A      G              +  +   G       
Sbjct: 606 LPDILIHTDPKRVTQVISNLISNAAKFTEEGSISFSYRIVEG-YVLIEVIDTGIGISLQH 664

Query: 163 KFTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +       + S      +       +       +  +            L 
Sbjct: 665 QQSIFDRFVKINSFKQGTGLGLTICKTIIEALNGTIGVDSRPGEGARFWFTLP 717


>gi|160882174|ref|ZP_02063177.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
 gi|260175224|ref|ZP_05761636.1| two-component system sensor histidine kinase [Bacteroides sp. D2]
 gi|156112429|gb|EDO14174.1| hypothetical protein BACOVA_00117 [Bacteroides ovatus ATCC 8483]
          Length = 422

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 62/229 (27%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
               ++S+  L +   + + H++ +P+ AI     L+              +I  ++   
Sbjct: 182 EREHSISADKLKSAFIANMSHEVRTPLNAIVGFSGLMVSASSEEERKMYADVIAENNERL 241

Query: 61  IIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +                        D+   L ++E + +  +       V     +  + 
Sbjct: 242 LRLVNDIFDLSQIESGTVDFVYTEFDANDLLRELEGIFKTKLNNSSVELVCEAHIQPIMM 301

Query: 113 R----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L NL   A      G            E  F +   G      E+  +I 
Sbjct: 302 YSERERIIQVLSNLLHNAMKFTESGEIRLGCSLKGTEEVCFVVSDTGIGI-PKEEQKKIF 360

Query: 169 DGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +  +    +       +       L  +   +     S +L +
Sbjct: 361 SRFIKLDREMQGTGLGLTLSQTIIQNLGGNLELDSEINRGSTFSFVLPR 409


>gi|153801427|ref|ZP_01956013.1| sensor histidine kinase [Vibrio cholerae MZO-3]
 gi|124123002|gb|EAY41745.1| sensor histidine kinase [Vibrio cholerae MZO-3]
          Length = 497

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIR 54
           A     N+ +          L + + HD+ +P+GAI  S   L +  +    +   +L+ 
Sbjct: 253 AHRTLANVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLT 312

Query: 55  LSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             +       + +                    V+    +G +   +   +   K    S
Sbjct: 313 SIAEQGERLNRSLTKLLDITRYTASALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIES 372

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S    ++L+NL   A    PRG ++ I+      +   ++  NG      E 
Sbjct: 373 QPMLVELDSLLIEQVLINLVENAAKYTPRGSEIEIACAYQDQQFTLAVIDNGAGI-PDEA 431

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D       +  D   +      ++   ++  +     +      +  + 
Sbjct: 432 LPRIFDRFYRVDGNHADGTGLGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|153006691|ref|YP_001381016.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152030264|gb|ABS28032.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 591

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 35/248 (14%)

Query: 1   MAKNICFNLSSMDL--------VA--LLCSRICHDIISPIGAIHNSLELLDE-------V 43
           +A      + +  L         A     S   H++ +P+ A+  +L  +          
Sbjct: 326 LAHRAAQAIENARLYSEAQNAVAARDEFLSIASHELRTPLTALRLALGNMRRVTSREALE 385

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +  E ++ +  ++     RL+ +  A      +       ++++V    +  D   Q+ 
Sbjct: 386 RLPPEHVERVLAAAERQGQRLEKLVAALLDVSRIHMGKLELELDEVELGAVVSDALTQLE 445

Query: 104 WTGEKI--------------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
               +                     ++++ NL   A                       
Sbjct: 446 DEASQTGSTLSAAGEPVLGAWDRLRLSQVITNLLSNAVKYGAGKPVEVSYGPS-AAGAYV 504

Query: 150 SLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
            ++ +G      +    F +              +  Y V  +   +   +  E      
Sbjct: 505 RVRDHGIGIAPTDQRQIFERFERAVSSRNYGGLGLGLYIVRRIVEAHGGTIRVESTPGEG 564

Query: 207 VVLSALLE 214
                 L 
Sbjct: 565 SEFRVELP 572


>gi|91793055|ref|YP_562706.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
            OS217]
 gi|91715057|gb|ABE54983.1| ATP-binding region, ATPase-like protein [Shewanella denitrificans
            OS217]
          Length = 1396

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 56/237 (23%), Gaps = 24/237 (10%)

Query: 2    AKNICFNLSSMDLVALLCS------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
             + +        +  LL S       I H+  +P+  I   +E            +    
Sbjct: 843  QRTLEIIDQKQKIEQLLASKTREFDNISHEFRTPLAVILGRVEQRLGQNQTLTNQRAFEA 902

Query: 56   SSMSAIIRLKFMRLAFGY--------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                A      +                           + +G                 
Sbjct: 903  IDTVAKRLAIMVDDVIEMGRTFDSAQASEKSRLCLSHLCVEVGTHMHEYAALKKQRLHTD 962

Query: 102  VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLA-- 158
            ++       LS+   K+L NL   A       G + +S++    +     +K NG     
Sbjct: 963  ITAGLYVDGLSKAIEKMLNNLVANAIKYTQEEGDIHLSLRPLQSHYVELIVKDNGPGIAL 1022

Query: 159  -RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  F +       +      I    V  +   ++ ++  E           LL 
Sbjct: 1023 EYQQRVFERFYRIAESADQPGSGIGLALVQEVVKAHRGQISLESAPKQGCRFRVLLP 1079


>gi|90418935|ref|ZP_01226846.1| putative phosphate sensor histidine kinase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337015|gb|EAS50720.1| putative phosphate sensor histidine kinase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 461

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 60/238 (25%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +     +    +     +   H++ +P+ ++   +E L     D+    ++ + ++R  +
Sbjct: 213 RTAELRIE--RMRTDFVANASHELRTPLASLSGFIETLLGPAKDDPAAREKFLGIMREQA 270

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWT 105
                 +  +             I                   +                
Sbjct: 271 TRMSRLIDDLLSLSRIEMKRHVPISTRVDLGAILRKVESQLAPLAAQLDVELSLDVPDEP 330

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFP 161
                   E  ++  NL   A      G +V IS+  +    ++    +++  G      
Sbjct: 331 VAIPGDEDELMQVFSNLVENACKYGETGKRVEISLTRTVEAGESFVDAAVRDFGPGIPAE 390

Query: 162 EKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +                +       +   ++ RLL E       V +A L 
Sbjct: 391 HVPRLTERFYRVDPGRSRAKRGTGLGLSITRNILLRHRGRLLVESTIGKGSVFTARLP 448


>gi|71908720|ref|YP_286307.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
 gi|71848341|gb|AAZ47837.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 799

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 58/237 (24%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL---------------ELLDEV 43
           + +       +  L+ +  + S + H++  P+ AI N                 +LL  +
Sbjct: 555 LQQQKRLE-QTSRLITMGEMASSLAHELNQPLSAIANYCAGCVKRMQAGNYRLDDLLAAM 613

Query: 44  GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                  +            +K            + +        +          V + 
Sbjct: 614 QKASSQAERAGKIIRRMRDMVKKGDPNRQPIALEELVDEARAFADIEAQRTGTQIIVDLP 673

Query: 104 WT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNL 157
                 +       ++LLNL      ++                  +     S+   G+ 
Sbjct: 674 ENLPRIVVDRIMIEQVLLNLVKNGIEAMSDVPFERRQLSLQAKVVDERMLEISVTDQGHG 733

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I      +  +   I       +   ++ RL  E   +   V    + 
Sbjct: 734 L-AEEDIEKIFAPFYTTKPEGMGIGLAICRSIIEFHQGRLWVEPRREGGTVFHFTVP 789


>gi|313674008|ref|YP_004052119.1| gaf sensor signal transduction histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940764|gb|ADR19956.1| GAF sensor signal transduction histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 381

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 14/220 (6%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIR 63
              ++ L+    S I HDI + +  + N +ELL+    +     E +  I          
Sbjct: 160 RSENLQLIGKFTSTIIHDIKNLLNIVQNYVELLEIASEDESDFKEYVDSIYTELKLIHGL 219

Query: 64  LKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +  +                  D +  +     ++     +D  V             + 
Sbjct: 220 VMDILDFSKNQITLKTTRIELDDFMEYITKHTNIMLKPYNIDFYVDYPKGIIFYGDKDKL 279

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-S 174
            ++L NL   A  ++   G++ + V    N  IF ++ NG      E   +I D      
Sbjct: 280 FRVLFNLINNAVDAVGENGQIKLKVLLENNSLIFIVEDNGKGI-PTEMVDRIFDPFYTAG 338

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  + + +   +  E            L 
Sbjct: 339 KEKGTGLGLAVVKDIVNAHNGTIAVESKVGEYTKFLIRLP 378


>gi|296186041|ref|ZP_06854446.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296049309|gb|EFG88738.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 307

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 70/237 (29%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIR 54
           M K    N  + D +  + S I HD+ +P+ ++   +EL      L E      +  +  
Sbjct: 68  MQKIFKRNKVNEDSIKKMISNISHDLRTPLTSMLGYIELVLNDNTLSEEEKRKYIEIVYN 127

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDS-----------LIGLGDIEQVIEDFIAVDKRVQVS 103
             +    +  +F +++   +  V                +      ++      +     
Sbjct: 128 KGNHLYSLMEEFFQVSKLESKDVKLDIRKVNISEIIRQNIISFFNELKKRDMEPQINIPE 187

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +   +IL NL   +      G  + +++   KN    S+  NG      E 
Sbjct: 188 EDIYAFGNEKAVNRILSNLINNSLKYGSEGTTIGVNLTYDKNNVFISVWDNGVGIPKEEI 247

Query: 164 ---FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++        ++  S  +    V  L       +    I       +  L K
Sbjct: 248 DYVFDRLYTVEKSRKLNLKSSGLGLTIVKKLVEALGGTISVSSIPFEKTAFTFTLPK 304


>gi|262376195|ref|ZP_06069425.1| sensory kinase in two-component system response regulatory system
           [Acinetobacter lwoffii SH145]
 gi|262308796|gb|EEY89929.1| sensory kinase in two-component system response regulatory system
           [Acinetobacter lwoffii SH145]
          Length = 384

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 68/238 (28%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 L    +   L   + H+I +P+G I  + +LL     + +  +   +       
Sbjct: 141 SREENLLQQHQVARQLIRGVAHEIKNPLGGIRGATQLLARSLNDPQYKEFTDIIISEVDR 200

Query: 63  RLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116
                    G         V+    L  +  +I +      ++   +     ++  +R  
Sbjct: 201 LRNLADTMLGSRQLPSYELVNVHEPLERVRSLIANQTKKKIKIIRDYDLSLPEVLADRDQ 260

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQD------------------SKNENIFSLKINGN 156
             +++LN+   A  ++    +  +  Q                    ++     ++ NG 
Sbjct: 261 LIQVILNICANAVQAMTENKEFFVEHQQELILRTRIQRLFTINGVIHRSVVRIDIEDNGP 320

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E    +    V S      +       + H++   +  + +     V S  L 
Sbjct: 321 GV-PEEIIESVFYPLVTSRAKGTGLGLSIAQNIIHQHNGMIECQSVAGK-TVFSLYLP 376


>gi|193084072|gb|ACF09742.1| integral membrane sensor signal transduction histidine kinase
           [uncultured marine group III euryarchaeote AD1000-40-D7]
          Length = 752

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 67/244 (27%), Gaps = 30/244 (12%)

Query: 1   MAK---NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           M K   ++   +          +   + + H++ +P+ AI    E+L E   +D +    
Sbjct: 502 MRKQKDDLKIAMQKAQTANQAKSDFLANMSHELRTPLNAIIGYSEMLIEEADDDGLDTYS 561

Query: 54  RLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              S                + L+    G +D  I   D  ++++   A  K +      
Sbjct: 562 EDLSKINSSGEHLLTLINDILDLSKIEAGKMDLHIEEFDFAELLKQIEATAKPLVEKNKN 621

Query: 107 EKIDLSRER-----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           + I   + +            +IL N+   A      G        + KN   F +   G
Sbjct: 622 KFIIKCQTKKLKLKNDQTKLRQILFNMLSNAAKFTKEGMVTLQINPEKKNHLKFEVLDTG 681

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +      +                +       +      R+  E  +      S
Sbjct: 682 IGMNGKQLEKVFEEFTQAKSSTSKDYGGTGLGLPISKKMTEMMGGRMGVESKEGKGTTFS 741

Query: 211 ALLE 214
            ++ 
Sbjct: 742 IIIP 745


>gi|182679920|ref|YP_001834066.1| integral membrane sensor hybrid histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182635803|gb|ACB96577.1| integral membrane sensor hybrid histidine kinase [Beijerinckia
           indica subsp. indica ATCC 9039]
          Length = 762

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 66/248 (26%), Gaps = 35/248 (14%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---------EDEVMQL 52
           A+        ++ +  L   I HD  + + A+  +LELL                  ++ 
Sbjct: 361 AEAQLRQAQKLEAIGQLTGGIAHDFNNLLTAVLGNLELLSRHVEGGDAKLQRWTRNALEA 420

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            +  +      L F R         D    L  +  ++   +  + ++++  T       
Sbjct: 421 AKRGASLTARLLAFSRRQPLEPQPADLFAMLQSMSDLLSRTLGENIQIEMRITEHLWRPF 480

Query: 113 RERAKI---LLNLFMVAHASL--------------------PRGGKVTISVQDSKNENIF 149
            +  ++   +LN+ + A  ++                            +     +  + 
Sbjct: 481 VDINQLDNAILNICLNARDAMEGRGKLVIAARNVTREETNNDMTDDALSADIIKGDYVLI 540

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +   G          ++ +    +        +    V     ++   +  E       
Sbjct: 541 EISDKGPGI-DKAVLERVFEPFFTTKPIGQGTGLGLSQVYGFLKQSGGHIEIESEKGQGT 599

Query: 208 VLSALLEK 215
            +   L +
Sbjct: 600 TVRLFLPR 607


>gi|160887742|ref|ZP_02068745.1| hypothetical protein BACUNI_00144 [Bacteroides uniformis ATCC 8492]
 gi|270295689|ref|ZP_06201890.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317478675|ref|ZP_07937830.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|156862773|gb|EDO56204.1| hypothetical protein BACUNI_00144 [Bacteroides uniformis ATCC 8492]
 gi|270274936|gb|EFA20797.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905186|gb|EFV26985.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 623

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 66/240 (27%), Gaps = 29/240 (12%)

Query: 2   AKNICFNLSSMDLV-------------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE 48
            +     LS+  L              ++  S + H+I +P+ A+     LL E G++DE
Sbjct: 371 RQREKVKLSTQKLATSRINAENAMRAKSVFLSNMSHEIRTPLNALSGFSSLLTEEGLDDE 430

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103
             +            L  +        S++       I Q     I  +    V+     
Sbjct: 431 TRRQCNEVIQQNSELLLKLINDVIDLSSLEFGKLQFCIAQHDAVSICRNVIDTVNKVKQT 490

Query: 104 ----------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
                                  ++L+NL + A    P+G  V    +++ +  +F++  
Sbjct: 491 QAELTFTTELEEMPIETDDSRLQQVLINLLINATKFTPQGSIVLKLEKETDDTVLFTVTD 550

Query: 154 NGNLARFPEKFTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G      ++                  +      L+      ++  +            
Sbjct: 551 TGCGIPKDKQANIFQRFEKLNENAQGSGLGLSICQLIIEHIGGQIWIDSEYAEGSRFCFT 610


>gi|114324570|gb|ABI63592.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|224798966|gb|ACN62988.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155
                 +  S    +I+LNL   A                             F++   G
Sbjct: 848 KVPDYVVGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|77456489|ref|YP_345994.1| osmolarity sensor protein envZ [Pseudomonas fluorescens Pf0-1]
 gi|77380492|gb|ABA72005.1| osmolarity-sensing histidine-kinase [Pseudomonas fluorescens Pf0-1]
          Length = 437

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 67/220 (30%), Gaps = 9/220 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           MA+++       +L   + + + HD+ +P+  +  SLEL+ D   + D++++ I      
Sbjct: 211 MAEDVEQAGREREL---MLAGVSHDLRTPLTRLRLSLELMGDRTDLTDDMVRDIEDMDAI 267

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L F+R     +     L  L        +      R+++              ++L
Sbjct: 268 LDQFLAFIRDGRDESVEEVDLSDLVREVAAPYNQTEEKVRLRLEPIQPFPLRRVSMKRLL 327

Query: 120 LNLFMVAHASL--PRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
            NL   A             +S   S    + S+   G      E    F     G+   
Sbjct: 328 NNLIGNALNHAGGSVDVAAYVSGDTSAPYVVLSVMDRGAGIDPSELEAIFNPFTRGDRAR 387

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +A  +   +         +     L 
Sbjct: 388 GGKGTGLGLAIVKRIASMHGGNVELRNRSGGGLEARVRLP 427


>gi|317476223|ref|ZP_07935474.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907634|gb|EFV29337.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 294

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 51/232 (21%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------Q 51
           + +       S  L     + + H+I +P+  I     +L E    D+           +
Sbjct: 52  LKRMNEVAEESRQLQNAFIANMTHEIRTPLNVIVGFTTILAETDNLDKEQRVAFLKEINE 111

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------- 103
              +        L + ++        D  + +  +            R+           
Sbjct: 112 NKDVLLQLVNDLLDYSKIEANTMEYNDGEVDVNALILETCIAENAHSRLPGIQAEFVEKL 171

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +++ NL   A     +G       + S     F +   G       +
Sbjct: 172 PQCRLRIDRVRFGQVVGNLIRNALKFTEQGCVKVGCRRLSNQNFYFYVADTGCGIEEESR 231

Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   I    +       +       +  E            L 
Sbjct: 232 RAIFERFVKMNYNIRGTGLGLSICKSIIEHYGGGIGVESKKGEGSTFYFTLP 283


>gi|299532291|ref|ZP_07045684.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni S44]
 gi|298719699|gb|EFI60663.1| PAS/PAC sensor signal transduction histidine kinase [Comamonas
           testosteroni S44]
          Length = 458

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +A+++     +  +     + + H+I +P+  +   +E L     E       ++L+   
Sbjct: 197 LARDVTALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQNLPLEEDERRRYLELMAQQ 256

Query: 57  SMSAIIRLKFMRLAFG-YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113
           +      ++ +          + S      + Q++       + +  + T ++       
Sbjct: 257 AERMQHLVEDLLTLSRLEGSPLPSNNDWVSVAQLLNRCENEARGLSNALTRKQAKPHVLN 316

Query: 114 ------------------ERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKIN 154
                             E      NL   A    P GG++ +  Q        F++K +
Sbjct: 317 FPDEQALRQAGDLAGASAELHSAFSNLLANAMRYTPAGGQIDVRWQLLPDGSARFAVKDS 376

Query: 155 GNLARFPEK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G             +      +         +    V  +   +  RL  E         
Sbjct: 377 GPGIDEKHVSRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHGARLSIESELGKGSEF 436

Query: 210 SALLE 214
           +    
Sbjct: 437 AVTFP 441


>gi|296502595|ref|YP_003664295.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
 gi|296323647|gb|ADH06575.1| two component system histidine kinase [Bacillus thuringiensis
           BMB171]
          Length = 452

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 231 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 290

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 291 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 350

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 351 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 410

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 411 NHAAGAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 451


>gi|284035551|ref|YP_003385481.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
 gi|283814844|gb|ADB36682.1| multi-sensor signal transduction histidine kinase [Spirosoma linguale
            DSM 74]
          Length = 1484

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 54/235 (22%), Gaps = 25/235 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQ 51
            + +    N     L +L  S   H   +P+  I +S EL++         +       + 
Sbjct: 1244 LEREQALN----KLKSLFVSMASHQFRTPLMTIQSSSELIEFLVNQDNTDQKPAVQRHLH 1299

Query: 52   LIRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             I+                              V+ L  +  I           +RV + 
Sbjct: 1300 RIKGEVGKLTNILADILLLGQSDSGKISMQAEQVNLLPYITQIRDDYFSTGLGQRRVLIQ 1359

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE 162
               +    + +R  +   L  +   +        +     ++      +  +G      E
Sbjct: 1360 ANEQDYWAAVDRKLMSHVLQNLLTNATKYSKGDPLIRLTQTEQTIQLEVIDDGIGIPAGE 1419

Query: 163  K---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F      +         +           +   +  +         +  L 
Sbjct: 1420 LPLLFDSFFRASNARQFQGTGLGLSIARQFVELHNGTITVQSEVGKGTTFTVTLP 1474


>gi|228958287|ref|ZP_04120013.1| hypothetical protein bthur0005_17960 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228801368|gb|EEM48259.1| hypothetical protein bthur0005_17960 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 443

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 281

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 282 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 341

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 342 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 401

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 402 NHAAGAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442


>gi|229144617|ref|ZP_04273019.1| hypothetical protein bcere0012_17770 [Bacillus cereus BDRD-ST24]
 gi|228638857|gb|EEK95285.1| hypothetical protein bcere0012_17770 [Bacillus cereus BDRD-ST24]
          Length = 443

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 281

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 282 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 341

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 342 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 401

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 402 NHAAGAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442


>gi|229170397|ref|ZP_04298070.1| hypothetical protein bcere0007_53250 [Bacillus cereus AH621]
 gi|228613094|gb|EEK70246.1| hypothetical protein bcere0007_53250 [Bacillus cereus AH621]
          Length = 408

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 20/226 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +     +     +  + + I H+I +P+ A+    ++  E   ED +     +     
Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNPEDTM--SYEIMLQEI 241

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------EQVIEDFIAVDKRVQVSWT-GEKI 109
                F+           +     +I           +       V   +QV        
Sbjct: 242 ERINGFVSELMLLGKPKPTNYEWCNIGEILLYVVQLMESYATQYKVKFNLQVDGNLPVIN 301

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              ++  ++LLN+      S+P GG + I + + +      S++  G      EK  +I 
Sbjct: 302 GDDKQLKQVLLNIIKNGIESMPGGGNIQILAYEKAGENLCISVEDQGLGI-ENEKIEKIG 360

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +   +       +  E++  +  E        +   L 
Sbjct: 361 KAFYTTKENGTGLGLMITYKIIEEHQGSIAIESSMGIGTKVEIYLP 406


>gi|226945550|ref|YP_002800623.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
 gi|226720477|gb|ACO79648.1| integral membrane hybrid histidine protein kinase [Azotobacter
           vinelandii DJ]
          Length = 914

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 51/225 (22%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-- 73
           +   +++ H+I +P+  +   L+LL E  ++      +   + S    +  +     Y  
Sbjct: 407 SRFLAKMSHEIRTPLNGVLGMLQLLKETRLDHSQRFYVDTIASSGSTLMAVINDILDYAR 466

Query: 74  ---------TGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119
                        D    L D   +               +                ++L
Sbjct: 467 IESGKLSLEHIEFDLEEMLSDTLNLFTAQAMEKRLRLHMSLDEGVPRHIQGDPTRLKQVL 526

Query: 120 LNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN---- 171
            NL   A      G            D      F +  +G      E   ++ +      
Sbjct: 527 TNLLSNALKFTSEGQVRLDVSRRRKSDGSEHLYFGVSDSGIGI-RQEAQARLFESFSQGD 585

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       L       +  +         +  L 
Sbjct: 586 SSTTRRYGGSGLGLAISKELVEMMGGHIEVQSTPGLGSRFTFNLP 630


>gi|218130913|ref|ZP_03459717.1| hypothetical protein BACEGG_02508 [Bacteroides eggerthii DSM 20697]
 gi|217987257|gb|EEC53588.1| hypothetical protein BACEGG_02508 [Bacteroides eggerthii DSM 20697]
          Length = 294

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 51/232 (21%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------Q 51
           + +       S  L     + + H+I +P+  I     +L E    D+           +
Sbjct: 52  LKRMNEVAEESRQLQNAFIANMTHEIRTPLNVIVGFTTILAETDNLDKEQRVAFLKEINE 111

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------- 103
              +        L + ++        D  + +  +            R+           
Sbjct: 112 NKDVLLQLVNDLLDYSKIEANTMEYNDGEVDVNALILETCIAENAHSRLPGIQAEFVEKL 171

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +++ NL   A     +G       + S     F +   G       +
Sbjct: 172 PQCRLRIDRVRFGQVVGNLIRNALKFTEQGCVKVGCRRLSNQNFYFYVADTGCGIEEESR 231

Query: 164 FTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +   I    +       +       +  E            L 
Sbjct: 232 RAIFERFVKMNYNIRGTGLGLSICKSIIEHYGGGIGVESKKGEGSTFYFTLP 283


>gi|217977833|ref|YP_002361980.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
 gi|217503209|gb|ACK50618.1| PAS/PAC sensor signal transduction histidine kinase [Methylocella
           silvestris BL2]
          Length = 494

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 73/240 (30%), Gaps = 31/240 (12%)

Query: 5   ICFNLSSMDLVALLC-----SRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRL 55
               L S    A L      + + H++ +P+ AI    E+L +         +  +   +
Sbjct: 215 RQDELDSAGTAADLSKDHFLANVSHELRTPLNAIIGFSEILGDADQAPRDPAKQREYAAI 274

Query: 56  SSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              S           + L+  ++GS D       +  ++E    + K        E   +
Sbjct: 275 IHRSGQHLLSVVNSILDLSKIHSGSFDLSPSHFGVAPLVEVCCDMVKLEAQDRHIELKRV 334

Query: 112 SRE-----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             E             +I++NL   A    P  G+V+ISV       + ++  +G     
Sbjct: 335 CPEGLPEIVGDKRACKQIVINLLSNAVKFTPAHGEVSISVSIEDETLLIAVADSGVGINE 394

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ +   +         +   +    V  L   +   +      D    +   L 
Sbjct: 395 QDL-ARLGNPFFQARGALDRPFEGTGLGLSIVSGLVGLHGGSIAVASEPDQGTCVLVRLP 453


>gi|167761798|ref|ZP_02433925.1| hypothetical protein BACSTE_00139 [Bacteroides stercoris ATCC
           43183]
 gi|167700304|gb|EDS16883.1| hypothetical protein BACSTE_00139 [Bacteroides stercoris ATCC
           43183]
          Length = 479

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR------------- 63
           S I H++ +PI AI  SL+LL++     + +E  QL +    +A                
Sbjct: 263 STISHELKTPISAILMSLQLLEDNRVGALNEEQEQLSKSIRENADRLLGITGELLNMTQV 322

Query: 64  -LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKILL 120
               +++    T  ++ +       QV  D   +   V+            S + A +L 
Sbjct: 323 EAGKLQMIPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKMPKLFVDSEKIAWVLT 382

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--VESTIDS 178
           NL   A       G V I  +   N     ++  G         +          + +  
Sbjct: 383 NLLSNAIRYSKENGHVIIGARQEDNSVELYVQDFGKGIDPRYHQSIFDRYFRVPGTKVQG 442

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   L  +            L+
Sbjct: 443 SGLGLSISKDFVEAHGGTLTVQSELGKGSRFVIRLK 478


>gi|161506109|ref|YP_001573221.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160867456|gb|ABX24079.1| hypothetical protein SARI_04296 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 788

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 298 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 357

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 358 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 417

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 418 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 477

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 478 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 512


>gi|148509171|gb|ABQ81808.1| GacS [Pseudomonas alkylphenolia]
          Length = 917

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 273 MARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSA 330

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      V    
Sbjct: 331 SSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  VT ++ + ++    +    ++  G     
Sbjct: 391 PLSLVGDPLRLKQILTNLVSNAIKFTREGTIVTRAMLEEEHGDSVQLRICVQDTGIGLSS 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWVSLRL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|148555883|ref|YP_001263465.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
 gi|148501073|gb|ABQ69327.1| PAS/PAC sensor signal transduction histidine kinase [Sphingomonas
           wittichii RW1]
          Length = 692

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 64/234 (27%), Gaps = 24/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAI---HNSLELLDEVGIEDEVMQLIRLSSMS- 59
           N    +S + ++  +   + H++  P+ AI     +++L+ +   E   +  +R +    
Sbjct: 452 NDLAQVSRLGMMGEMAGALAHELSQPLSAIVNFLGAVDLMLDGDDERVDIARLRQALQRA 511

Query: 60  ----------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEK 108
                           F+        +      + +   +   +  +   R+   +  E 
Sbjct: 512 SEQASRAGEIIRRLRAFILRGEADMRAEPLTSLVREAAALALFNSSSFGIRLSYDFENEG 571

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV--------TISVQDSKNENIFSLKINGNLARF 160
             +  +R +I   L  +   +                 +     N     +K +G     
Sbjct: 572 RVVLGDRIQIQQVLVNLIRNAADAMTAQGEGRRELLIATKMARDNLIEVIVKDSGPGI-A 630

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++      +  +           +   +  ++      D   V    L 
Sbjct: 631 SEMLERLFSPFATTKREGLGFGLAISRRIIEAHGGQMSATSAPDGGAVFRFTLP 684


>gi|114324568|gb|ABI63591.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155
                 +  S    +I+LNL   A                             F++   G
Sbjct: 848 KVPDYVVGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|114324564|gb|ABI63589.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|114324574|gb|ABI63594.1| two-component osmosensing histidine kinase [Alternaria longipes]
 gi|114324576|gb|ABI63595.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155
                 +  S    +I+LNL   A                             F++   G
Sbjct: 848 KVPDYVVGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|114324566|gb|ABI63590.1| two-component osmosensing histidine kinase [Alternaria longipes]
          Length = 1330

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155
                 +  S    +I+LNL   A                             F++   G
Sbjct: 848 KVPDYVVGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQEQECDPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|297580226|ref|ZP_06942153.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
 gi|297535872|gb|EFH74706.1| sensor histidine kinase LuxQ [Vibrio cholerae RC385]
          Length = 857

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCHEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTATIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|77919938|ref|YP_357753.1| two component signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
 gi|77546021|gb|ABA89583.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 752

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 17/232 (7%), Positives = 57/232 (24%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
           ++   + +  + A   +  RI H+I +P+  I  S + L           +        +
Sbjct: 513 DLTHLIKAQRMAAWREVARRIAHEIKNPLTPIRLSAQRLRRRYLDRFPEDDRVFDDCTDM 572

Query: 56  SSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                            F ++        +    + +   + ++              E 
Sbjct: 573 IIKQVDELKILVDEFSNFAKMPSANPTPNNLNDIINETLILYQEAH-RQICFSFHPDNEI 631

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLARFPE 162
              + +R +I  ++  +   ++                          +  +G      E
Sbjct: 632 PVFNLDRDQIKRSIINMLENAVGAMADDGGHISLETHYNREMKMASIFIIDDGCGI-PTE 690

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +      +    V  +  ++   +  +            L 
Sbjct: 691 DKPRLFEPYFSTKKSGTGLGLAIVATIVADHNGYVRVKDNQPKGTKFIIELP 742


>gi|32400396|dbj|BAC78687.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1145

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 544 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 603

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 604 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 663

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 664 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTG 723

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 724 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 783

Query: 211 AL 212
             
Sbjct: 784 FT 785


>gi|304321087|ref|YP_003854730.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
 gi|303299989|gb|ADM09588.1| sensory box histidine kinase/response regulator [Parvularcula
           bermudensis HTCC2503]
          Length = 662

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 65/246 (26%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L +    A+L S        R  H++ +P+ AI    ++L+    +       
Sbjct: 394 RKQSEEALKAAREAAVLASQAKSEFLSRTSHELRTPMSAIIGFAQVLELDHDDLAPRHQT 453

Query: 54  RLSSMSAIIRLKFMRLAF-----------------GYTGSVDSLIGLGDIEQVIEDFIAV 96
             + +    R     +                     +              +++     
Sbjct: 454 ATTQILKAARHLLSLINDLLDVSSIEAGTQALKLEEVSLLDVLEEAYSLAAPIVKAANLS 513

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            +  Q S         R   +++LNL   A      G  V ++VQ   N+ + S+  +G 
Sbjct: 514 FQFDQESAQYTVQCDRRRTIQVVLNLLTNAAKYNREGAYVALTVQPDGNDVVVSVTDDGA 573

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII--DDHNVV 208
                E+  ++           +   D   +       L      R+        D    
Sbjct: 574 GI-PDERIPRLFTPFDRLGQEKQRRTDGSGLGLALSKSLVETMGGRIGFRNATPPDRGAS 632

Query: 209 LSALLE 214
               L 
Sbjct: 633 FWFTLP 638


>gi|118581119|ref|YP_902369.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118503829|gb|ABL00312.1| PAS/PAC sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 812

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 65/235 (27%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M + +      ++ V LL   I HD  + +  I  +  L              +  I  +
Sbjct: 434 MEEEL-VKAQKLESVGLLAGGIAHDFNNILTGILGNASLAKMLFSPQDRAYAYVSNIESA 492

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-----DL 111
           +  A                +   +   ++ +          +     +           
Sbjct: 493 AYRAKDLTLQFLTFSKGGAPIKKPVNSVELIRNNTQLALSGLKSTCELSVPDDLRIVEVD 552

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGNLAR 159
             + ++++ NL + A  ++PRGG + +  ++              +    S+   G    
Sbjct: 553 EGQISQVINNLIINADQAMPRGGVIRVVCENVETSASNGLPLKEGSYVRVSVSDQGAGI- 611

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I D    +    H +       +  ++   +  +         +  L 
Sbjct: 612 TAEHRGKIFDPYFTTKDRGHGLGLASAYAIMKKHAGHICVDSKPGAGATFTIYLP 666


>gi|332711100|ref|ZP_08431034.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332350082|gb|EGJ29688.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 369

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 4   NICFNLSSM--DLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
                +     +  +   S + H+  +P+  +  + ELL+            +  + I+ 
Sbjct: 130 RQALVIEQELREQKSSFVSIVSHECRTPLSKVLLATELLERYSKDLVKDKHRKYFEQIKG 189

Query: 56  SSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           S                     +         V+    L +  Q+  +            
Sbjct: 190 SIQDMRQLLDEILFIEKAEGNKLNFHPTPINLVELCSDLIEQMQLATEGSHRIILTSQGN 249

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
             +    ++    I  NL        P GG V   +    N  IF +K +G      E  
Sbjct: 250 IPDAYMDTQLLRYIFNNLLSNGIKYSPEGGTVEFQLTVEGNWAIFKIKDSGIGIPEQELS 309

Query: 164 --FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F      +    I    +    V     +++ ++L +       V +  L 
Sbjct: 310 QLFEPFQRASNVGDIPGTGLGLSIVKKSVEQHRGQILVDSQVGVGTVFTVRLP 362


>gi|320353794|ref|YP_004195133.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122296|gb|ADW17842.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 70/240 (29%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61
           +        M+ +  L   I HD  + + AI    +L L+++  +    + ++    + +
Sbjct: 392 EEQFRQAQKMESIGTLAGGIAHDFNNILSAILGYGDLALEDMAEDHPARKSVQTMIEAGM 451

Query: 62  I-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDL 111
                    L F R       +VD    +G IE+ I   I  D   Q      +      
Sbjct: 452 RASHLTKDLLLFSRKQVSQKEAVDINQIIGRIEKFIRRIIGEDILCQTHLAKESLVIHAD 511

Query: 112 SRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156
           S +  ++L+N    A  ++P               +                 ++   G 
Sbjct: 512 SHQMDQVLMNFATNARDAMPGGGVFSITTERIRIDQDFIDLHGFGIPGPYARITVADTGK 571

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I D    +        +    V  +  +++  +          VL+  L 
Sbjct: 572 GMNPQTV-AKIFDPFFTTKEMGKGTGLGLAVVYGIIKQHQGHIEVTSTPGKCTVLTVYLP 630


>gi|312883344|ref|ZP_07743070.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368960|gb|EFP96486.1| sensor histidine kinase LuxQ [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 848

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 58/228 (25%), Gaps = 24/228 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           S    A   +R+ H++ +P+  I    +LL    ++ + ++ + +   S    L  +   
Sbjct: 470 SAKNQADFLARMSHELRTPLNGIMGVAQLLKGRMVDKQDIEKMEVLCSSGEHLLAVLNDI 529

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWTGEKIDLSRE 114
             ++    S   +   +  + D     ++V                 +            
Sbjct: 530 LDFSKIEQSSFNIEGAKFHLSDLGYSIEKVFGPICFEKGLMFELRSNIEDDIWVFSDQVR 589

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPEKFTQIVD-- 169
             +++ NL   A      G  V        +   +    +   G   +            
Sbjct: 590 LNQVIYNLVSNAVKFTHEGEVVLSLSYSQGSEFSQLHIEVSDTGIGIKNERLEAIFDPFV 649

Query: 170 ---GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +         +    V  L      ++  E +          + 
Sbjct: 650 QAGPDTTQIYGGSGLGLAIVQSLVTTMGGKVGVESVYGSGTRFFITVP 697


>gi|265764347|ref|ZP_06092915.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
 gi|263256955|gb|EEZ28301.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_16]
          Length = 1039

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L+S          L +   + + H+I +P+ AI     +L     E+E  + +
Sbjct: 657 RKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYV 716

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105
            +   +    L  +         +++         +  +         +           
Sbjct: 717 SII-ENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQL 775

Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                             +++++NL   A     RG            E  F +   G  
Sbjct: 776 EFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVTDTGCG 834

Query: 158 ARFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +K   I    V   S      +       L       +  +  +         L 
Sbjct: 835 I-PKDKQESIFGRFVKLNSFAQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 892


>gi|262384058|ref|ZP_06077194.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262294956|gb|EEY82888.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 768

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 52/232 (22%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           M + +        S  L +   + + H+I +P+ AI     LL +    +E  +   +  
Sbjct: 532 MEQELRDKAKVEESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQTNPSEETKEFCEIIE 591

Query: 58  MSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +  + L+               M   +           L    Q               
Sbjct: 592 TNNELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLYCEIPE 651

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +++ N    A     +G       +       F +K  G        
Sbjct: 652 QDCVIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDG-LYFYVKDTGKGIERKNL 710

Query: 164 FTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      + I    +       +      ++  +  +         + 
Sbjct: 711 PHVFERFAKFDSFIQGTGLGLSICQTILENLHGKIGVDSEEGKGSTFWFTIP 762


>gi|257481622|ref|ZP_05635663.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|331008766|gb|EGH88822.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 530

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L +            + V V  +   +   
Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLENFVAEFRSAAMAGQSVHVEISPGTLTTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            R        + +      +  I  ++ +G         
Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDQQSDLPILEVQDDGPGVSEQHL- 474

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++ +    +      +  Y    L   N+  L           L   
Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522


>gi|220909483|ref|YP_002484794.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866094|gb|ACL46433.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1331

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 21/216 (9%)

Query: 20   SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
            S + H++ SP+  I    +LL     +     + +  I  ++      +  +        
Sbjct: 970  SILSHELRSPLNPILGWAQLLQIKTLDQTTTKQALATIEHNAKLQTQLVDDLLDVARILR 1029

Query: 70   -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                        V  +    ++ +   D  +V  + +++  G+         +I+ NL  
Sbjct: 1030 GKLSLQEAPVNLVSVIAAALEVVKTAADVKSVTLQPELTDIGQVRGDEARLQQIVWNLLS 1089

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTIDSH 179
             A    P GG+VTI ++  +++   ++   G   +           +  D ++       
Sbjct: 1090 NAIKFTPTGGRVTIRLEQVEDQAQITVTDTGIGIQPQFLPHIFESFRQQDTSISRQYGGL 1149

Query: 180  DIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
             +    V  L   +   +  E   ++     +  L 
Sbjct: 1150 GLGLSIVKYLVEAHGGTITAESPGENQGATFTVQLP 1185


>gi|167615791|ref|ZP_02384426.1| sensory box histidine kinase [Burkholderia thailandensis Bt4]
          Length = 709

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 63/232 (27%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 475 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 531

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 532 ATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQITHDRLPIVH 591

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++    K  I+          +  +F ++ NG     P+ F +I
Sbjct: 592 GIAAQLVLLFQNLIGNAIKFRSKERIARIHLEADTRDDAWVFRVRDNGIGI-DPQYFERI 650

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R+  E         S  L +
Sbjct: 651 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIAVESEPGRGTTFSFALSR 702


>gi|167590631|ref|ZP_02383019.1| multi-sensor hybrid histidine kinase [Burkholderia ubonensis Bu]
          Length = 985

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 58/239 (24%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    +   + + H+I +P+ AI  +LEL+    +     + ++  + S+
Sbjct: 473 LREAREAAEDANRAKSTFLATMSHEIRTPLNAIIGNLELMARASLPPSERRRLKTIASSS 532

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
                                       D    L D+  +            D R+    
Sbjct: 533 DALLRVINDVLDLSKAESNQMALECIPFDLRDLLRDVAAIFRPVADAKHLTLDCRMAADL 592

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160
               +       +++ NL   A     RGG    +   +          +++  G     
Sbjct: 593 ADGYLGDPTRLRQLVSNLVGNAIKFTKRGGVTIDARVATDAAGARRVAIAVRDTGIGIPE 652

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                    +       +A      L  E   D      A L 
Sbjct: 653 DALPNLFDVYMQADPSIYRRFGGTGLGLPLCGRIARLMHGELTVESRVDEGTTFVAALP 711


>gi|52549170|gb|AAU83019.1| two-component sensor histidine kinase [uncultured archaeon
           GZfos26B2]
          Length = 381

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           +   +  + + +   A +   + HD+ +P+ AI +  E L             E ++L++
Sbjct: 142 LLDELERSNNELKDFAYI---VSHDLKAPLRAITSLAEWLAADYGDKLDEDGREQLELLK 198

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109
             +      ++ +        S +    +     V E    +D    ++           
Sbjct: 199 NRTRRMHNLIESILAYSRIGRSKEEKEEVDLNTLVSEVITTIDPPEGIAIEVVGELPTIP 258

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLA---RFP 161
                  +I  NL   A   + +         T       +   FS+  NG       + 
Sbjct: 259 FERTRMEQIFQNLLRNAALYMDKPEGRITISCTDDGDGDDDNWRFSVADNGPGIDEKYYR 318

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + F           ++S  +    V  +   +   +  E            + K
Sbjct: 319 KIFQIFQTLRPRDEVESTGVGLTIVRKIVRMHGGEITVESKLGEGSTFHFTIPK 372


>gi|60682196|ref|YP_212340.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
 gi|60493630|emb|CAH08419.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis NCTC 9343]
          Length = 1015

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L+S          L +   + + H+I +P+ AI     +L     E+E  + +
Sbjct: 633 RKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYV 692

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105
            +   +    L  +         +++         +  +         +           
Sbjct: 693 SII-ENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQL 751

Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                             +++++NL   A     RG            E  F +   G  
Sbjct: 752 EFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVTDTGCG 810

Query: 158 ARFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +K   I    V   S      +       L       +  +  +         L 
Sbjct: 811 I-PKDKQESIFGRFVKLNSFAQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 868


>gi|53713997|ref|YP_099989.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
 gi|52216862|dbj|BAD49455.1| two-component system sensor histidine kinase [Bacteroides fragilis
           YCH46]
          Length = 1053

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L+S          L +   + + H+I +P+ AI     +L     E+E  + +
Sbjct: 671 RKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYV 730

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105
            +   +    L  +         +++         +  +         +           
Sbjct: 731 SII-ENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQL 789

Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                             +++++NL   A     RG            E  F +   G  
Sbjct: 790 EFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVTDTGCG 848

Query: 158 ARFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +K   I    V   S      +       L       +  +  +         L 
Sbjct: 849 I-PKDKQESIFGRFVKLNSFAQGTGLGLSICRTLVEHMGGHIGVDSEEGKGSTFWFSLP 906


>gi|254239958|ref|ZP_04933280.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
 gi|126193336|gb|EAZ57399.1| hypothetical protein PA2G_00591 [Pseudomonas aeruginosa 2192]
          Length = 651

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+  +   L+LL+      E  +   L++ S  
Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312

Query: 62  IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
             LK +     ++                  +  G               +++       
Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
             E         +IL+NL   A                ++         ++  +G     
Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        D ++        +       LA      L  E  +      +  + 
Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491


>gi|330505382|ref|YP_004382251.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328919668|gb|AEB60499.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 362

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 64/235 (27%), Gaps = 26/235 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                LS  +   LL   + H+I +P+G I  + +LL      +++     +    A   
Sbjct: 122 KEEAQLSKQETTKLLVRGLAHEIKNPLGGIRGAAQLLSRELPNEDLKDYTNVIIEEADRL 181

Query: 64  LKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +    G          +    L  +  +IE        +   +     DL  +R ++
Sbjct: 182 RNLVDRMLGSNKLPSLAMTNVHEVLERVANLIEAESQGGITLVRDYDPSIPDLLIDREQM 241

Query: 119 LLNLFMVAHASLPRGGKVTIS-------------------VQDSKNENIFSLKINGNLAR 159
           +  +  +   ++                                +      +  NG    
Sbjct: 242 IQAVLNIVRNAMQAISGQKHDMGLGRISLRTRTLRQFTIGHTRHRLVVKVEIIDNGPGI- 300

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE    I    V    D   +       +  +++  +  E    H  V S  L 
Sbjct: 301 PPELQETIFYPMVSGRADGTGLGLAITQNIISQHQGLIECESYPGH-TVFSIFLP 354


>gi|256374531|ref|YP_003098191.1| histidine kinase [Actinosynnema mirum DSM 43827]
 gi|255918834|gb|ACU34345.1| histidine kinase [Actinosynnema mirum DSM 43827]
          Length = 469

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 58/217 (26%), Gaps = 27/217 (12%)

Query: 23  CHDIISPIGAIHNSLEL------------------LDEVGIEDEVMQLIRLSSMSAIIRL 64
            H++ +P+ +I    +L                  L        V+    L         
Sbjct: 256 SHELRTPLTSIRGYADLFRYAAANAPEEREAHLEKLRAEAARMSVLLEELLLLARLDSAE 315

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
             + +       V+ +    D  +V      V   V           +    ++L NL  
Sbjct: 316 AELPVRPENGDLVELVGQAVDAFRVARPGHPVALAV-AHPRVPMRFDAGRLRQVLDNLLT 374

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDS 178
            A    P+G  V++SV     + +  +  +G      +   +I D               
Sbjct: 375 NAAVHTPKGTAVSVSVDVVGGDAVVRVSDSGPGIPARD-QERIFDRFYRVDHSRTRDRGG 433

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +       L   ++ RL  E         +  L +
Sbjct: 434 SGLGLAVARSLVEAHRGRLDLESRPGS-TTFTITLPR 469


>gi|89099083|ref|ZP_01171962.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89086213|gb|EAR65335.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 590

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 66/237 (27%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  +   +  
Sbjct: 355 MTEERQL----DKLRKDFIANVSHELRTPIAMMQGYSEAIVDDIAGTDEEKKEMASVIYD 410

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVS 103
                       L   R+  G+       + L             + ++ I   +     
Sbjct: 411 ESLRMGRLVNELLDLARMEAGHIQLTLDRVELKPYISRIARKFQGLSKEKIIKLESEFSI 470

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              + +       ++L NL   A    P  G V I+V+  +   +  +  +G+     + 
Sbjct: 471 TEDDFVFDPDRIEQVLTNLIDNAIRHTPEDGSVKITVKSEEKGLMVEVSDSGSGIPEEDL 530

Query: 163 --KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +    +           +       +   +K ++  +         S ++ +
Sbjct: 531 PFVFERFYKADKARTRGRSGTGLGLAIAKNIIDAHKGQISVQSKLQQGTTFSFVIPR 587


>gi|322643371|gb|EFY39935.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
          Length = 802

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|312222273|emb|CBY02213.1| similar to two-component sensor protein histidine protein kinase
            [Leptosphaeria maculans]
          Length = 2472

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 66/238 (27%), Gaps = 28/238 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +N+     +    +L  + + H++ +P+  +    ELL    +  E         + A  
Sbjct: 1963 RNMKLKEEAAKAKSLFLANVSHELRTPLNGVIGMSELLKASPLNGEQAGYADSIRVCADT 2022

Query: 63   RLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTG 106
             L  +                    +     + ++ + +    A       + + +    
Sbjct: 2023 LLSIINDLLDYSKLEAGKMNVMEMPLSLNETITEVVRALAYTNAERGLKTIEELYLDPEM 2082

Query: 107  EKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE 162
              +       ++++NL   ++   PR       V     D   +   S+   G      E
Sbjct: 2083 LVMGDPVRLHQVMMNLLSNSYKFTPRGSVTVRAVVDQEADDWVDITCSVIDTGIGI-PEE 2141

Query: 163  KFTQIVDGNVE------STIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
            +  ++     +       +     +       L       ++  + +      +S  L
Sbjct: 2142 QKKKLFLPFSQIESSSARSYGGTGLGLSICKALIENVMHGKVWLDSVPGKGTTVSFAL 2199


>gi|302344471|ref|YP_003809000.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301641084|gb|ADK86406.1| PAS/PAC sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 822

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 55/237 (23%), Gaps = 29/237 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIR 54
                 S  + AL  L   I HD  + +GA+    EL                +V+    
Sbjct: 434 EEQLRQSQKMEALGTLAGGIAHDFNNILGAVMGYGELALSRAARGRDCAGEISQVLYAAD 493

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +       L F R        +D    +    +++ + I     +++    +   +S +
Sbjct: 494 RAKSLVRQILTFSRKVESRPRPMDLNSDVKRCVELLRNLIPKMIHIELDLAPDLALVSAD 553

Query: 115 RAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGN 156
             +I   L      A  ++P               +               +  +  +G 
Sbjct: 554 SNQIEQVLINLGVNAADAMPGGGRLAIATRNLDVDQDFCQGRPDLSPGPYVLLEVTDSGQ 613

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                              +     +       +   +  R+               
Sbjct: 614 GMDQQTLDHIFDPFFTTKEVGHGTGLGLSTAYGIVKGHGGRIACRSAPGQGATFRVY 670


>gi|300813172|ref|ZP_07093546.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
 gi|300495830|gb|EFK30978.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus delbrueckii subsp. bulgaricus
           PB2003/044-T3-4]
          Length = 530

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 60/236 (25%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           M   +   +          S + H++ +P+  I   L +L   G +D  +          
Sbjct: 268 MLDRMQKYIEQQK---QFVSDVSHELRTPVAVIEGHLSMLKRWGKDDPQVLEESIDASIS 324

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVS 103
             + ++      +   +  +++  Y  ++   + +          +  D ++      + 
Sbjct: 325 EAERMKHLIQEMLDLTRAEQISVHYPNAIAEPMEVLTRVVGDMGMVHPDFKISLEVEDLD 384

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +         +IL+ L            ++ ++   S  E    ++  G      +K
Sbjct: 385 PDTKIQIFQGHLEQILIILIDNGIKYSTDRKEIAVAAGQSGQEMQIVVQDYGEGISDEDK 444

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               + +       L       +  E +            
Sbjct: 445 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVESYHGTIDVESVLGQGSQFRITFP 500


>gi|262373812|ref|ZP_06067090.1| phosphate regulon sensor kinase PhoR [Acinetobacter junii SH205]
 gi|262311565|gb|EEY92651.1| phosphate regulon sensor kinase PhoR [Acinetobacter junii SH205]
          Length = 452

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 59/215 (27%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---------- 70
            I H++ +P+  +   LE   +        +       S   R+  +             
Sbjct: 231 NISHELRTPLTVLSGYLETFTDQDDITPRWKRAFTQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                       + +  L D  +           + +    + I    E A    NL   
Sbjct: 291 KKVAKNQIIDMANLMNQLFDDARAYNLDYGHTLNLDIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSHD 180
           A    P+GG +TI   +  +   FS++ NG             +    +           
Sbjct: 351 AIKYTPKGGIITIGWHEDGDHAYFSVQDNGIGINPKHLPRLTERFYRVDSARSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L     ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAHLEITSKENEGSTFTAVFPK 445


>gi|260558563|ref|ZP_05830759.1| hypothetical protein EFXG_00354 [Enterococcus faecium C68]
 gi|260075737|gb|EEW64043.1| hypothetical protein EFXG_00354 [Enterococcus faecium C68]
          Length = 286

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 75/236 (31%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           + K+    +  ++    L     S + H+  +P+  I   ++LL      +   +  + +
Sbjct: 50  LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 109

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWT 105
           +I   +  + +    ++L       +                 V        +++++   
Sbjct: 110 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFFQPKWEKEQLELDIE 169

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
              ++ +       ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 170 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQINGQIHIKLFETATEIVLEVTDSGVGMNEET 229

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 230 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 285


>gi|257440629|ref|ZP_05616384.1| sensor histidine kinase KdpD [Faecalibacterium prausnitzii A2-165]
 gi|257196952|gb|EEU95236.1| sensor histidine kinase KdpD [Faecalibacterium prausnitzii A2-165]
          Length = 627

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 58/234 (24%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +       + +L A L   I HD+ +P+ +I  +        E LD          +  
Sbjct: 386 KEQAALQARNEELRANLLRTISHDLRTPLTSISGNASNLLSNGETLDTETRNKICTDIFD 445

Query: 55  LSSMS---------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +                             +D +I         +              
Sbjct: 446 DAQWLIGLVENLLSITRIEDGRMNLQISPQLMDEMIEEALHHVNRKSCEHTITTQYGDEI 505

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +R   ++++NL   A    P G  + IS     ++ +  +  NG       K  
Sbjct: 506 LLVNVDARLIMQVVVNLVDNAIKYTPVGSVIQISAYRKDHQVVVEVADNGPGIPDRAKAQ 565

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  +  S  +       +   +   L       +  V S  L 
Sbjct: 566 VFEMFYTGQSRIADSHRSLGLGLPLCRAILTAHGGTLTLRDNIPNGSVFSFALP 619


>gi|229031644|ref|ZP_04187640.1| hypothetical protein bcere0028_36960 [Bacillus cereus AH1271]
 gi|228729678|gb|EEL80662.1| hypothetical protein bcere0028_36960 [Bacillus cereus AH1271]
          Length = 417

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 65/224 (29%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 194 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 248

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 249 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 308

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      E+  ++   
Sbjct: 309 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGM-TTEQLARLGQP 367

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 368 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 411


>gi|242280041|ref|YP_002992170.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242122935|gb|ACS80631.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 886

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 69/242 (28%), Gaps = 32/242 (13%)

Query: 4   NICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           N+   L  S  + A+  L   I HD  + + +I NS+EL    ++E  I  + +     +
Sbjct: 497 NLEKQLFQSQKMEAIGTLAGGIAHDFNNILTSIMNSVELALSDIEEDTITWKDLDRAIKA 556

Query: 57  SMSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGEKI 109
           +          L F R +       D    + +    I+  +  + RV           +
Sbjct: 557 AQRGSRVVKQILTFSRPSQEGFKPTDIGEVVKETVDFIKASLPRNIRVSARVPEGAPLVM 616

Query: 110 DLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKIN 154
               +  ++++NL   +  SL                   +               +  N
Sbjct: 617 ADPTQIHQVIMNLCTNSFHSLKGRGGSIDVALTTVEVEDEQAQFMRVAPGVYIRLEISDN 676

Query: 155 GNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E   +I D    +    +   +    V  L   +   +      D        
Sbjct: 677 GPGIPV-EILDKIFDPFFTTKGKAEGTGLGLAVVHGLIKGHGGGISVSSTPDVKTSFEIY 735

Query: 213 LE 214
           L 
Sbjct: 736 LP 737


>gi|205354229|ref|YP_002228030.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858576|ref|YP_002245227.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|205274010|emb|CAR39016.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|206710379|emb|CAR34737.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|326629351|gb|EGE35694.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|197103327|ref|YP_002128705.1| histidine kinase (low oxygen sensor with PAS domains)
           [Phenylobacterium zucineum HLK1]
 gi|196480603|gb|ACG80130.1| histidine kinase (low oxygen sensor with PAS domains)
           [Phenylobacterium zucineum HLK1]
          Length = 447

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 56/239 (23%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEV 49
           + +     L S       L AL  + S + H++  P+ AI N L     LL         
Sbjct: 197 LTEQRLHELQSELVHVSRLTALGEMSSALAHELNQPLSAIANYLTGAQRLLARQKDATSQ 256

Query: 50  ---------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKR 99
                    +     S        +F+               + +   +       +  R
Sbjct: 257 KVNGALDKAVAQALRSGDIIRRLREFVARGETSQRPESVAKLVEEASALALVGARQLGVR 316

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSLKI 153
           V          +  ++ +I   +  +   ++                         S+  
Sbjct: 317 VVFDLDERVDYVLVDKVQIQQVVLNLIRNAVEAMTDSPRRELTVASAPGPDGMVDISIAD 376

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G      +   ++    V +      +       +   +  R+  E       +    
Sbjct: 377 TGPGI-DKDVAGKLFQPFVTTKAQGMGVGLSICRTIVEAHGGRIWAEPNRGGGTIFHLT 434


>gi|193084137|gb|ACF09803.1| ammonium transporter/integral membrane sensor signal transduction
           histidine kinase [uncultured marine group III
           euryarchaeote SAT1000-53-B3]
          Length = 752

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 70/245 (28%), Gaps = 32/245 (13%)

Query: 1   MAK---NICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIED------ 47
           M K   ++   +          +   + + H++ +P+ AI    E+L E   +D      
Sbjct: 502 MRKQKDSLKVAMQKAQTANKAKSDFLANMSHELRTPLNAIIGYSEMLIEEADDDGLETYS 561

Query: 48  -EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----------IA 95
            ++ ++         +    + L+    G +D  I   D   +++               
Sbjct: 562 EDLAKIHSSGDHLLTLINDILDLSKIEAGKMDLHIEEFDFTNLLKQIEATARPLVDKNKN 621

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                  +   +  +   +  +IL N+   A     +G        + K+   F +   G
Sbjct: 622 KFVIKCKTKKLKLKNDQTKVRQILFNMLSNAAKFTKKGTITLQIKPEKKDNLRFDVIDTG 681

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 E+  ++ +                 +       +      ++  +  +      
Sbjct: 682 IGM-SEEQMDKVFEEFTQAESSTSKDYGGTGLGLPISKKMTEMMGGKMEVKSKEGKGTTF 740

Query: 210 SALLE 214
           S ++ 
Sbjct: 741 SIIIP 745


>gi|168819602|ref|ZP_02831602.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205343409|gb|EDZ30173.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320087774|emb|CBY97538.1| sensor histidine kinase FexB [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|168238030|ref|ZP_02663088.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734174|ref|YP_002116278.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|204931174|ref|ZP_03221968.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|194709676|gb|ACF88897.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197289156|gb|EDY28525.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|204319941|gb|EDZ05147.1| PAS fold family protein [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322615332|gb|EFY12253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618309|gb|EFY15200.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322622886|gb|EFY19730.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626792|gb|EFY23589.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631361|gb|EFY28121.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635372|gb|EFY32086.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322647057|gb|EFY43558.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651580|gb|EFY47953.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655052|gb|EFY51363.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657655|gb|EFY53923.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664151|gb|EFY60349.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667434|gb|EFY63596.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322674682|gb|EFY70774.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675685|gb|EFY71758.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682321|gb|EFY78344.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684924|gb|EFY80922.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323195871|gb|EFZ81042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323198988|gb|EFZ84085.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204312|gb|EFZ89321.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207659|gb|EFZ92606.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323211288|gb|EFZ96132.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214770|gb|EFZ99519.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221250|gb|EGA05676.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323224008|gb|EGA08301.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230342|gb|EGA14461.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233318|gb|EGA17412.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239355|gb|EGA23405.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242394|gb|EGA26420.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246904|gb|EGA30870.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323254163|gb|EGA37983.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323255280|gb|EGA39057.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323262743|gb|EGA46299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264053|gb|EGA47561.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323269439|gb|EGA52894.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|167552022|ref|ZP_02345775.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|194442848|ref|YP_002042586.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197250849|ref|YP_002148253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|194401511|gb|ACF61733.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|197214552|gb|ACH51949.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|205323203|gb|EDZ11042.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|170783492|ref|YP_001741985.1| putative signal transduction histidine kinase [Arthrobacter sp.
           AK-1]
 gi|150034979|gb|ABR66990.1| putative signal transduction histidine kinase [Arthrobacter sp.
           AK-1]
          Length = 644

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 61/216 (28%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------LKFMR 68
           SR+ H++ +P+ AI    +LL  + +  E  +       +                    
Sbjct: 282 SRMSHELRTPLNAILGFAQLLQNLPLSPEAAESAGHILDAGKHLLALVNDVLDITWIEAG 341

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKILLNLF 123
                T +V ++  +    Q+I    +         +  +     +  ++   ++ LNL 
Sbjct: 342 APGITTAAVPAIDPIHQALQLIRPLASASDIEIASDLHGALHRYILADTQRLRQVFLNLL 401

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----VESTIDSH 179
             A       G V +  ++  +   F +   G      +   ++          + ++  
Sbjct: 402 GNAVKFNTAQGAVRVWCEEKADFLRFFIMDTGPGMDESDA-QRLFKPFVRLSQSAEVEGS 460

Query: 180 DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
            +       L  E    L  E             + 
Sbjct: 461 GLGLALSKRLVQEMGGDLGIEHTAPGEGSTFFVDMP 496


>gi|157373308|ref|YP_001471908.1| osmolarity sensor protein [Shewanella sediminis HAW-EB3]
 gi|157315682|gb|ABV34780.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella sediminis HAW-EB3]
          Length = 436

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 72/213 (33%), Gaps = 8/213 (3%)

Query: 8   NLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRL 64
           ++  ++   ALL + I HD+ +P+  I  + E++  ++  ++D ++  I          +
Sbjct: 224 SMKQLEQDRALLMAGISHDLRTPLTRIRLASEMMVEEDEYLKDGIVHDIEDMDAIINQFI 283

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            ++R     T     L  L +     E        V+++   E    S    +IL NL  
Sbjct: 284 SYIRQDQESTREQGQLNDLIEDVVQAESNREAKIEVELNECPEIPMQSIAIKRILSNLVE 343

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        K+  S         FS++ +G      +    F     G+         +
Sbjct: 344 NAFRYGRGWVKL--SSHFDGKRVGFSVEDDGPGIPEDQIPKLFQPFTQGDTARGSVGSGL 401

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   ++  ++     +  +     L 
Sbjct: 402 GLAIIKRITDRHQGEVVLTNRAEGGLRAQVWLP 434


>gi|57234965|ref|YP_180981.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
 gi|57225413|gb|AAW40470.1| sensory box sensor histidine kinase [Dehalococcoides ethenogenes
           195]
          Length = 607

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 62/210 (29%), Gaps = 19/210 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF--------------MRL 69
           H++ +P+  I  + + L     ++  + L +  +  A    K               +++
Sbjct: 372 HELKTPLTPIMAASDTLSSGLKQEPWLNLAQNINKGAFNLNKRIDELLDLARGEIGVLQI 431

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMVAHA 128
                  ++    +            +    +       I+   +R  ++LLNL   A  
Sbjct: 432 KKIPIECIELSADIIQYIDAKLRKANLRLVFEHDENTIFIEADPDRLRQVLLNLLSNAIK 491

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----ESTIDSHDIQFY 184
             P  G + I    +  + +F +  +G      +        +         D   +   
Sbjct: 492 YTPGSGLIKIKCFRTSTDVVFQIIDSGIGISSSDMAYLFEPYHRLERDRERFDGMGLGLA 551

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +  R+  E  ++H  + +  + 
Sbjct: 552 LSKRFVELHGGRIWVENANEHGSIFTFTIP 581


>gi|56415257|ref|YP_152332.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197364187|ref|YP_002143824.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56129514|gb|AAV79020.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095664|emb|CAR61232.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|52144961|ref|YP_081868.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51978430|gb|AAU19980.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 340

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 98  LEKVRIEAKRSEESRKKLLSSISHDIRTPLTSIIGYIDALKDEVAASEIEKQEYLKILYM 157

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 158 KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQILIPE 217

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
            T   +       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 218 STFPIMADQLSLIRIIGNLMKNAIYYGKDGKTVGVELLETDTEYELLIWDKGPGIPKHDL 277

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++               +       L  +N   +  E            + K
Sbjct: 278 QNIFERMYRSEQSRNSSFGGSGLGLSISKALVEKNGGHIWVESNPWERTTFGFSIPK 334


>gi|78358820|ref|YP_390269.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78221225|gb|ABB40574.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 606

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 59/237 (24%), Gaps = 27/237 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQLIR 54
           ++        +     + + H++ +P+ +I    E+L E               +++   
Sbjct: 365 DVSEREQLEKVRRDFVANVSHELKTPLTSIKGYTEMLIESPPAGREQNSMFLQTILKNAN 424

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD--------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                    L   R       +              + +++    +     +        
Sbjct: 425 HMIKMVNSLLVLARAQHKREQTAMSAVDAAAVIRQTVREMDPAAHEKNISIETQMPETPL 484

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------ 160
                     ++  NL   A    P    VT+S + ++    F +K +G           
Sbjct: 485 MVTGDRDALCEVFRNLLDNAVKYSPNNSAVTVSARITEGRAAFCIKDSGPGIPEASKERI 544

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPE----IIDDHNVVLSALL 213
            E+F ++          S  +       +   +   +  E                L
Sbjct: 545 FERFYRLDRDGDTHKNGSAGLGLAICRRIVKSHGGEIWVESPLDSKTGSGAAFFVTL 601


>gi|16762090|ref|NP_457707.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|29143579|ref|NP_806921.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|213053137|ref|ZP_03346015.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213857504|ref|ZP_03384475.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|289826616|ref|ZP_06545638.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25301091|pir||AG0906 aerobic respiration control sensor protein [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16504393|emb|CAD07845.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29139214|gb|AAO70781.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|16125315|ref|NP_419879.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
 gi|13637937|sp|Q03228|DIVJ_CAUCR RecName: Full=Histidine protein kinase divJ
 gi|13422363|gb|AAK23047.1| sensor histidine kinase DivJ [Caulobacter crescentus CB15]
          Length = 597

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 64/235 (27%), Gaps = 27/235 (11%)

Query: 6   CFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMS 59
              + +  L A      + + H++ +P+ AI    +++       + D   +   L   S
Sbjct: 317 QARIDAEALAAGRARFLANMSHELRTPLNAIMGFSDIMRARMFGPLSDRYAEYAELIHES 376

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------VQVSW 104
               L  +      +        L        + +    R               V    
Sbjct: 377 GGHLLDLINDVLDMSKIEAERFELQRGVFDAREAVQAAMRLLRVQSDTAGVQLRGVLPPG 436

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             E     R   +I+LNL   A    PRGG+VT++           +   G      +  
Sbjct: 437 ELEVDADRRALKQIVLNLVSNALKFTPRGGQVTVTAHGYDGVLEIVVADTGVGISPEDL- 495

Query: 165 TQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++     +            +    V   A  +   ++ E        +S  L 
Sbjct: 496 ERLGRPYEQAGGAEQRARGTGLGLSLVRAFAQLHGGEMVIESRLGAGTTVSVRLP 550


>gi|332667143|ref|YP_004449931.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332335957|gb|AEE53058.1| multi-sensor hybrid histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 871

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/244 (9%), Positives = 61/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + +     + +    A           + + H+I +P+ AI    ++L      ++  + 
Sbjct: 476 LLQQKNEIIEAEKENAENSERAKHQFLANMSHEIRTPMNAIKGMTDILIRRNPNEDQKEY 535

Query: 53  IRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------- 100
           +     S+          + ++    G V+       + +++ +   + +          
Sbjct: 536 LNGIKQSSDSLLVIINDILDISKIEAGKVELEHEPFSVVELVNNVHTIMQFKAEEKGLGL 595

Query: 101 ---QVSWTGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKIN 154
                +        +    +ILLNL   A     +      V       K    F++   
Sbjct: 596 LKDIPTENLTVQGDATRLRQILLNLIGNAIKFTEKGLVTTSVKSEQVGDKINVHFTVSDT 655

Query: 155 GNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G                    +         +       L   +  ++  E         
Sbjct: 656 GIGIDADRMGKIFESFEQAYSDTSRKFGGTGLGLSISKKLVELHNGKIWVESEKGKGSQF 715

Query: 210 SALL 213
              +
Sbjct: 716 HFTI 719


>gi|311033145|ref|ZP_07711235.1| histidine kinase [Bacillus sp. m3-13]
          Length = 458

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 60/229 (26%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-VMQLIRLSSMS 59
           +  +         L     S + HD+ +P+ +I    ELL    +  E  ++   +    
Sbjct: 230 LQAHENERTKLEKLRDDWISNVSHDLKTPLASIRGYAELLRYQDLTPEERLEYAEVIERQ 289

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------- 111
           +I     +      T   +  + L   E  +E F+       ++                
Sbjct: 290 SIYMKDLLDDFNLTTRLRNQEMPLDLEETRVESFVREIVIDLLNDPQFSKYHISFESSSP 349

Query: 112 ---SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
               +    ++    +    +     +  I V      +   +   G      +    F 
Sbjct: 350 ESNWKMDRHLMKRAILNFIYNALIHNEDDIEVSIQVMSDGILISDTGKGIPSHDLEHIFE 409

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   G     I    +       +   +  ++           +  L++
Sbjct: 410 RYYRGTNTQNIRGTGLGMAIGRDIVEAHGGKVTITSELGCGTTVKVLMK 458


>gi|304412086|ref|ZP_07393696.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS183]
 gi|307305981|ref|ZP_07585727.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica BA175]
 gi|304349636|gb|EFM14044.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS183]
 gi|306911474|gb|EFN41900.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica BA175]
          Length = 438

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  ++  ++D ++  I     
Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R     +  +  +  L       E   A +  V ++   E    +    ++
Sbjct: 280 IISQFIAYIRQDQETSRELGQINKLIQDVAQAEANRAGEIEVVLTDCPEAQFQAIAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS Q       F+++ NG      +    F     G++   
Sbjct: 340 LSNLVENAFRYGS--GWIRISSQFDGKRIGFTVEDNGPGIDESQITKLFQPFTQGDIARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   ++ ++      +  +     L 
Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQVTLSNRAEGGLRAQVWLP 436


>gi|196232777|ref|ZP_03131628.1| histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196223237|gb|EDY17756.1| histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 733

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 60/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIR 54
           +       +    L AL  + S I HD  + +  I    ELL           + +  + 
Sbjct: 357 LEAAQQHVIQQERLRALGQMASGIAHDFNNALVPILGFCELLQLSPNALQDRKKCLSYLE 416

Query: 55  LSSMSAIIR---------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----- 100
               +A                       G V     +    ++ +       +      
Sbjct: 417 TIQTAAKDAASVVSRLREFYRANTGEEEFGPVQLSRLVNQAIKLTQPRWKDQAQANGVTI 476

Query: 101 ----QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
               Q+S             ++L NL   A  ++P GG +TI  +   +  +  +  +G 
Sbjct: 477 SIVPQLSDVPPVRGEESALREVLTNLIFNAVDAMPAGGTITIRTRRESDCGVLEVADSGT 536

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +             +    V  +   +  ++               L 
Sbjct: 537 GMTEEVRQRCLEPFFTTKGERGTGLGLSMVFGIVQRHGGQIDLRSELGRGTTFLISLP 594


>gi|189464626|ref|ZP_03013411.1| hypothetical protein BACINT_00969 [Bacteroides intestinalis DSM
           17393]
 gi|189436900|gb|EDV05885.1| hypothetical protein BACINT_00969 [Bacteroides intestinalis DSM
           17393]
          Length = 783

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 62/234 (26%), Gaps = 28/234 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLI 53
           MA+N     S ++        + H+I +P+ AI     LL        E   +  ++++I
Sbjct: 551 MAENAELKQSFLN-------NMSHEIRTPLNAIVGFTNLLVGEGGDEIEPEEKKAMLEII 603

Query: 54  RLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             ++   +  +  +                 +  +          + +I+  +     + 
Sbjct: 604 NRNNELLLKLVNDVVEISRLDSGNLDLKIKEWNMTTVVKEIYMAYQTLIKPSLQFHLVLD 663

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF 160
            S +           +++ N    A      G        D ++      ++  G     
Sbjct: 664 ESLSLPVRIDRMRFIQVISNFLNNADKFTRSGSVTLGCSVDKEHRKVSVYVQDTGKGIDE 723

Query: 161 PEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E              +    +      ++       +  +         + +L
Sbjct: 724 KELMMIFDRFYKTDEFEQGSGLGLSICKVIIERLCGHIEVQSEVGKGSRFTVIL 777


>gi|127514488|ref|YP_001095685.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella loihica PV-4]
 gi|126639783|gb|ABO25426.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella loihica PV-4]
          Length = 351

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 64/232 (27%), Gaps = 24/232 (10%)

Query: 5   ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
               L +    A  L   + H+I +P+G +  + +LL     + +  +   L    A   
Sbjct: 119 QQLTLDAQQQAAQYLVRNLAHEIKNPLGGLRGAAQLLSRELEDADQREFTDLIIEQADRL 178

Query: 64  LKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +               +    +  + +++   +  +  +   +     D+  ++ ++
Sbjct: 179 RNLVDRLLGPQKPTEHSLHNIHAVIQKVLKLVSVTLPGNIHLIQDYDPSIPDIEMDQEQL 238

Query: 119 LLNLFMVAHAS----------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              +  +   +                     +VTI     K     S+  +G     PE
Sbjct: 239 QQAVLNIVQNAIQALETVEDGGEIRIKTRTQHQVTIGTTRHKLVLALSIIDDGPGI-PPE 297

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V        +        A  +  R+    +       + LL 
Sbjct: 298 LMDTLFYPMVTGREQGSGLGLSIAHNFARLHGGRIDCASVPGK-TEFTILLP 348


>gi|309389285|gb|ADO77165.1| integral membrane sensor signal transduction histidine kinase
           [Halanaerobium praevalens DSM 2228]
          Length = 465

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 62/214 (28%), Gaps = 18/214 (8%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            S + H++ +P+  +   LE +++           E+ +  +  +        F      
Sbjct: 248 TSDLAHELRTPLTTLSGYLEAIEDGKLKADLATIKEMQEETKRITKLVENLNDFANAQNK 307

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNLFMV 125
                   I L  I + +    +   +       + +              +I+ N+   
Sbjct: 308 VFNLKKEKINLKPIIKKVLKHFSKSIKDKNIELKLNLDSELYLNGDQDSLFQIVDNIIEN 367

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI--DSHD 180
           A     + GK+ I  +  K+  I + K  G   +  +    F +    +           
Sbjct: 368 AIKYNKQNGKIIIEAKKEKDYLIINFKDTGLGIKAKDLPYIFERFYRTDQSRNSKNQGSG 427

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I    V  L   +  ++  +  +    +    L 
Sbjct: 428 IGLAVVKELVEAHNGKIKAQSNEQQGTIFKLKLP 461


>gi|296390015|ref|ZP_06879490.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAb1]
          Length = 651

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+  +   L+LL+      E  +   L++ S  
Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312

Query: 62  IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
             LK +     ++                  +  G               +++       
Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
             E         +IL+NL   A                ++         ++  +G     
Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        D ++        +       LA      L  E  +      +  + 
Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491


>gi|262199147|ref|YP_003270356.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
 gi|262082494|gb|ACY18463.1| integral membrane sensor signal transduction histidine kinase
           [Haliangium ochraceum DSM 14365]
          Length = 516

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 68/241 (28%), Gaps = 31/241 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           M + +      M L   + S I H++ +P+G I     +L +  G +DE    +      
Sbjct: 277 MRRELAARDERMQL---MLSGIAHEVRNPLGGIELFAGILRDELGPDDERRSHVARIERE 333

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                + +     Y       + L D          +    A  + V++     ++    
Sbjct: 334 IGYLGEVVNAFLEYARRPPLELALIDLTALLADVLELARADAEQRGVRLQLDAPELACHA 393

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSK-------------------NENIFSLKIN 154
           +  ++   +  +   ++        +  D                          +++  
Sbjct: 394 DAGQLRRAVLNLVRNAIQACAPAADTDADGDDDGACAVLVRATRERRAGVQMVCIAVENP 453

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G      E   ++ +    +      +    V  +A ++   +     D    V S  L 
Sbjct: 454 GPPL-PDEVRARMFEPFFTTREKGTGLGLALVREIAEDHGGEVEVRSEDGR-TVFSLWLV 511

Query: 215 K 215
           +
Sbjct: 512 R 512


>gi|228952378|ref|ZP_04114464.1| hypothetical protein bthur0006_17820 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|229069549|ref|ZP_04202838.1| hypothetical protein bcere0025_17540 [Bacillus cereus F65185]
 gi|229079180|ref|ZP_04211728.1| hypothetical protein bcere0023_18390 [Bacillus cereus Rock4-2]
 gi|229190105|ref|ZP_04317109.1| hypothetical protein bcere0002_17750 [Bacillus cereus ATCC 10876]
 gi|228593328|gb|EEK51143.1| hypothetical protein bcere0002_17750 [Bacillus cereus ATCC 10876]
 gi|228704106|gb|EEL56544.1| hypothetical protein bcere0023_18390 [Bacillus cereus Rock4-2]
 gi|228713688|gb|EEL65574.1| hypothetical protein bcere0025_17540 [Bacillus cereus F65185]
 gi|228807295|gb|EEM53828.1| hypothetical protein bthur0006_17820 [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 443

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 57/221 (25%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 281

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 282 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 341

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A         + I     + + +  ++  G         + +     + 
Sbjct: 342 LKQVFLNIVQNAIKYSHEKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 401

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 402 NHAAGAGIGLAIVKKMVELHGGALSVTSKEGIGTTILIKLP 442


>gi|167622180|ref|YP_001672474.1| osmolarity sensor protein [Shewanella halifaxensis HAW-EB4]
 gi|167352202|gb|ABZ74815.1| histidine kinase [Shewanella halifaxensis HAW-EB4]
          Length = 419

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 74/213 (34%), Gaps = 8/213 (3%)

Query: 8   NLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRL 64
           ++  ++   ALL + I HD+ +P+  I  + E++  ++  ++D ++  I          +
Sbjct: 207 SMKQLEQDRALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDAIINQFI 266

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            ++R     T  ++ +  L       E         ++              ++L NL  
Sbjct: 267 SYIRQDQEGTRELEQINDLIQDVIQAESNREGSIDSELVECPRIPMQGIAVKRVLSNLVE 326

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A+      G V I+ Q +     FS++ NG      +    F     G+         +
Sbjct: 327 NAYRY--GNGWVRINSQFNGQYVGFSVEDNGPGIDEEQIPKLFQPFTQGDTARGSVGSGL 384

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   ++ +++     +  +     L 
Sbjct: 385 GLAIIKRIVDRHQGKVILTNRSEGGLHAQVWLP 417


>gi|15596808|ref|NP_250302.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|9947577|gb|AAG05000.1|AE004589_3 probable sensor/response regulator hybrid [Pseudomonas aeruginosa
           PAO1]
          Length = 651

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+  +   L+LL+      E  +   L++ S  
Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312

Query: 62  IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
             LK +     ++                  +  G               +++       
Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
             E         +IL+NL   A                ++         ++  +G     
Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        D ++        +       LA      L  E  +      +  + 
Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491


>gi|83950813|ref|ZP_00959546.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
 gi|83838712|gb|EAP78008.1| sensor histidine kinase/response regulator [Roseovarius nubinhibens
           ISM]
          Length = 729

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 60/236 (25%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     S      L  + + H+I +P+  +    +LL E  ++++          SA 
Sbjct: 205 AKHRAEAASRAKSAFL--ANMSHEIRTPMNGVMGMADLLRETDLDEDQALYATTIRNSAE 262

Query: 62  IRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             L  +     Y+                       I  +          V + +     
Sbjct: 263 ALLGIINDVLDYSKVEADRLSLQLDGFDLERCLHEIILLMQPKARDQGVDVWLDYDLFLP 322

Query: 110 DLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARFPE 162
              R       ++L NL   A    P G  +   V  S     E   +++  G      +
Sbjct: 323 TRLRGDGGRIRQVLTNLIGNAVKFTPEGHVLIRVVGVSAEGRAEIHVTVEDTGIGIAPDK 382

Query: 163 KFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     V+       +   +       L       +  E       V    +
Sbjct: 383 IGHVFGEFNQVEEAQNRRFEGTGLGLAIAQKLIRLMGGEIWVESAPGQGSVFGFTI 438


>gi|116049556|ref|YP_791640.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115584777|gb|ABJ10792.1| putative sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 651

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+  +   L+LL+      E  +   L++ S  
Sbjct: 255 AREEAEQANRAK--SDFLAMMSHELRTPMNGVLGMLQLLETTEQTREQAEYTALATESTE 312

Query: 62  IRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWT---- 105
             LK +     ++                  +  G               +++       
Sbjct: 313 HLLKVINDILDFSRIERGALELECIPFNLLELVQGSALVFQHSAQQRGLALELQIQAGLE 372

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
             E         +IL+NL   A                ++         ++  +G     
Sbjct: 373 NIEVCGDPTRIRQILVNLLGNALKFTEEGAIHLSLEWQALDHDVLWLTCAVHDSGIGISP 432

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        D ++        +       LA      L  E  +      +  + 
Sbjct: 433 ERLEHMFDAFQQADSSISRRYGGTGLGLAIARTLAERMGGTLQAESKEGSGSTFTLEIP 491


>gi|308272911|emb|CBX29515.1| hypothetical protein N47_J04960 [uncultured Desulfobacterium sp.]
          Length = 616

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
           K++       +L + + S + H + +P+ ++  S+ LL E         + E++   R  
Sbjct: 372 KDVTQMYEQQELKSGMISTVSHQLKTPLTSLRMSIYLLLEESVGVLNEKQIELLIAARDD 431

Query: 57  SMSAIIRLKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           S   +  +  +                  +        +        D            
Sbjct: 432 SERLLNIINDLLDLNCIESGKSDVSLKPVSPQTLVRDVIDSFLPEARDKGVTMANAVPDD 491

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFP 161
             E +  + +   +  NL   A      GG V++      +   FS++  G         
Sbjct: 492 LPEVVADAEKIRHVFTNLLSNAIRFTSPGGSVSVLADLEPDNVRFSVEDTGAGITAEHLK 551

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F        +       +    V  +   +   +  E            L 
Sbjct: 552 HLFEPFYRAPGQDEKSGVGLGLAIVKEIIQAHGGDVSAESEIGKGTSFGFTLP 604


>gi|294495726|ref|YP_003542219.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
 gi|292666725|gb|ADE36574.1| multi-sensor signal transduction histidine kinase
           [Methanohalophilus mahii DSM 5219]
          Length = 637

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 71/245 (28%), Gaps = 31/245 (12%)

Query: 1   MAKNI-CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + KN      ++ +L +L        S + H++ +P+  I    ELL E  +     + I
Sbjct: 385 LKKNSDELRKANEELKSLDRMKDEFLSNVSHELKTPLTLIKGYTELLCEGKMGQLNKEQI 444

Query: 54  RLSS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDK 98
            + +            +  +        S    +                +         
Sbjct: 445 EVQNKVVRNAERLKRLVDSLLYLSKIQASNVEYVFETVHVKEIIEIILEDMRMIADLKGI 504

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKING 155
            ++++   +   ++ ++ K+   +      A    P GGKVT++    + +    +K  G
Sbjct: 505 ELEMNLEEDLPKINGDKDKLTDMITNIVDNAIKFTPSGGKVTVTSFKKEGDIHIVVKDTG 564

Query: 156 NLARFPEK---FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVL 209
                      F +    +           +  Y  + +A  +   +      +     +
Sbjct: 565 IGIPEDMIDNLFQRFYQLDASRTRKYGGTGLGLYISMTIAQAHHGDIWATSEGEGKGTEM 624

Query: 210 SALLE 214
              + 
Sbjct: 625 HIEIP 629


>gi|291279597|ref|YP_003496432.1| hypothetical protein DEFDS_1208 [Deferribacter desulfuricans SSM1]
 gi|290754299|dbj|BAI80676.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 816

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 73/247 (29%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLVAL-------------LCSRICHDIISPIGAIHNSLEL-LDEVGIED 47
           A+     +  ++L                  + + H++ +P+ +I    EL L    +++
Sbjct: 261 AQTEELKVQKIELEEYSKRLNKLQQYKNEFIANMSHELRTPLNSIVGLTELILKNNQLDN 320

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD---------------SLIGLGDIEQVIED 92
           E+ + +++ ++S    L  +      +                          I+    +
Sbjct: 321 ELKEKLKIINLSGKQLLNIINDILDLSKIESGKIDLEIEEIDLTETIDYVSNIIKPQCNE 380

Query: 93  FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
                K +  +          +  +ILLNL   +       G + + +++     I  +K
Sbjct: 381 KNISFKVIFKAKNYLINTDKYKLTQILLNLLSNSVKYTEENGLIELIIEEDTKYIIIHVK 440

Query: 153 INGNLARFPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
             G      +    + +  V       +    +       L +    ++  +       +
Sbjct: 441 DTGIGI-PEDLMQNLFEPFVTMGRKFNVQGTGLGLPLTKKLVNLLGGKIAVKSKVGEGTI 499

Query: 209 LSALLEK 215
            +  + K
Sbjct: 500 FTVYIPK 506


>gi|260642788|ref|ZP_05417328.2| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
 gi|260620539|gb|EEX43410.1| two-component system sensor histidine kinase [Bacteroides
           finegoldii DSM 17565]
          Length = 669

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 18/221 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            S  L +   + + H+I +P+ AI    +LL   D    +     +I  +S   +  +  
Sbjct: 419 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPTADTPEEQKLYSDIINQNSDILLQLIND 478

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    +  + +                  +        
Sbjct: 479 ILDLSKIEAGTLEYVKRPINLGEVCRTIYAVHKERIKGGVDFIFDNGEEDLQMEGDPNRI 538

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173
            +I+ N    A       G++    +         +K  G      EK   I +  V   
Sbjct: 539 MQIITNFITNATKFT-HAGEIRFGFEREGENVRVYVKDTGIGI-EKEKVGHIFERFVKLN 596

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S +    +      ++  +    +              ++ 
Sbjct: 597 SFVQGTGLGLSICRMIIEKIGGEIGVTSEFGKGSTFYFIIP 637


>gi|238925291|ref|YP_002938808.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656]
 gi|238876967|gb|ACR76674.1| hypothetical protein EUBREC_2945 [Eubacterium rectale ATCC 33656]
          Length = 440

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 19/222 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           L++        + + H++ +P+ AI    EL++   +E E              RL  + 
Sbjct: 217 LAAAKSRQDFTANVSHELKTPLTAISGYAELIENGMVEKEQQIHFATEIRRNAQRLLSLI 276

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRE 114
                   +DS       EQ+    +  D    +                        + 
Sbjct: 277 NDIIKLSELDSSEAQQGFEQLDLYGLVKDCIENLQVNAEQRKVALNFDGTDCMVRGNRQL 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             +++ NL   A      GG V ++V     + + +++ NG      +    F +    +
Sbjct: 337 LTELVENLCQNAIRYNNEGGTVNVTVHKLGGKTVLTVEDNGIGIPKDQQERVFERFYRVD 396

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                      +    V  +   +   L  +        +  
Sbjct: 397 KSRSKETGGTGLGLAIVKHIVELHDAGLTLDSEVGRGTTIKV 438


>gi|229055111|ref|ZP_04195540.1| hypothetical protein bcere0026_2460 [Bacillus cereus AH603]
 gi|228721233|gb|EEL72760.1| hypothetical protein bcere0026_2460 [Bacillus cereus AH603]
          Length = 281

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + + +   
Sbjct: 39  LEKGQIEARKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQEYLEILYK 98

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 99  KSNDLKHLVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 158

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            T   I       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 159 STSPIIADHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYEILIWDKGPGIPKHDL 218

Query: 164 FTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                           +     +       L  +N  R+  + I          + K
Sbjct: 219 QNVFKRMYRSEQSRNPSYGGSGLGLSISKALVEKNGGRIWVDSIPWERTTFGFSVPK 275


>gi|229089634|ref|ZP_04220896.1| hypothetical protein bcere0021_4790 [Bacillus cereus Rock3-42]
 gi|228693664|gb|EEL47365.1| hypothetical protein bcere0021_4790 [Bacillus cereus Rock3-42]
          Length = 392

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 170 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 229

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V      +       ++++
Sbjct: 230 RSDSNQIEMDKKTFEMDKLLEEIVEPYKEIASYQEKEMILKVEHDISFMGDRERIHQMMV 289

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 290 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 349

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 350 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 388


>gi|229165251|ref|ZP_04293040.1| hypothetical protein bcere0007_2420 [Bacillus cereus AH621]
 gi|228618222|gb|EEK75258.1| hypothetical protein bcere0007_2420 [Bacillus cereus AH621]
          Length = 314

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + + +   
Sbjct: 72  LEKGQIEARKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQEYLEILYK 131

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 132 KSNDLKHLVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 191

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            T   I       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 192 STSPIIADHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYEILIWDKGPGIPKHDL 251

Query: 164 FTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                           +     +       L  +N  R+  + I          + K
Sbjct: 252 QNVFKRMYRSEQSRNPSYGGSGLGLSISKALVEKNGGRIWVDSIPWERTTFGFSVPK 308


>gi|227114441|ref|ZP_03828097.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 928

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 428 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDANRLVAAM 487

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I+                    +
Sbjct: 488 NNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLVVKKRLTLYCFI 547

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             +             ++L NL   A       G +   V        F ++  G   + 
Sbjct: 548 DPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIIFEVGCRDGYLEFVVRDTGVGIQP 606

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +  E       +    + 
Sbjct: 607 REAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLFGVRIP 665


>gi|226310695|ref|YP_002770589.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093643|dbj|BAH42085.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 498

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/216 (9%), Positives = 50/216 (23%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFG 72
             +   H++ +P+ +IH  LE+L      +       ++ +   +      +  +     
Sbjct: 270 FVADASHELRTPLTSIHGFLEVLLRGAAANPEHLQKALKSMHGETERLNKLVNDLLYLAR 329

Query: 73  YTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                           +      Q++          +V              +++LNLF 
Sbjct: 330 MDREPAFLLLEGQLDAVVHSMESQLLVLAGDRSVHFRVEPNVTVAFDCDGMKQVILNLFQ 389

Query: 125 VAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDS 178
            A              V    N    +++ NG                            
Sbjct: 390 NAVQHTDPVNGEIELIVSKIANGIELTIRDNGAGIAPEHVSHVFDRFYRIESSRARKSGG 449

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +  ++  +       V    L 
Sbjct: 450 AGLGLSITQSIVENHHGKIDVQSSLGTGTVFRVWLP 485


>gi|170686162|ref|ZP_02877384.1| sensory box histidine kinase [Bacillus anthracis str. A0465]
 gi|170669859|gb|EDT20600.1| sensory box histidine kinase [Bacillus anthracis str. A0465]
          Length = 363

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 121 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHSNGEECEQYVS 180

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S          +         ++    + +++  IE  +                
Sbjct: 181 ILKRKSYELKNQVDDLLEYCQINYREIELQKSVVNMKAFIEQIMIDFVPQLDDADMSFCI 240

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I +          +K  G     
Sbjct: 241 KGDKGLHVEMDVALMVRLFENVISNSIMYGKDGKQIWIQISKRDMNVEIEIKNFGQCIPN 300

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     D    V + +L 
Sbjct: 301 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDIAVRSNDKE-TVFTIVLP 358


>gi|170749676|ref|YP_001755936.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656198|gb|ACB25253.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 526

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 59/219 (26%), Gaps = 26/219 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLE---------------LLDEVGIEDEVMQLIRLSSMSAII 62
           + S + H+I  P+ AI + L+               LL +   +     L     +    
Sbjct: 299 MASTLAHEINQPLTAIASYLKGCRRLLGRMEGPEVPLLADAVNQAADQALRAGQVIR--H 356

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE---KIDLSRERAKI 118
              F+               + +   +          RV+     +    + +  +  ++
Sbjct: 357 LRDFVSRGESERHIEGLPKLIEEASALALVGAKEKGVRVRFDLDPDAPLVMAVRIQVQQV 416

Query: 119 LLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
           LLNL   A  ++    +           ++      +   G     PE   Q+    V +
Sbjct: 417 LLNLIRNAIEAMQDVARRDLTVATRALPAEGLVEVRVSDTGPGI-APEIAEQLFQPFVTT 475

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +   +       +   +  ++      D        L
Sbjct: 476 KANGMGVGLSICRTIVEAHGGKIQAGPGPDGGTTFRFTL 514


>gi|218782041|ref|YP_002433359.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763425|gb|ACL05891.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1110

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 26/239 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54
           ++       M+ V  L   + HD  + +  I    E+  +       +           +
Sbjct: 729 QSQLLQAQKMESVGRLAGGVAHDFNNMLSVIMGHAEMAMDEMDPANPVFADLSEIFSAAQ 788

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            S+      L F R        +D    +  + +++   I  D  +  +       ++ +
Sbjct: 789 RSADITRQLLAFARKQTIAPKVLDLNHTVEGMLKMLRRLIGEDIDLVWAPHNNLWAVNMD 848

Query: 115 RAKILLNLFMVAHAS-----------------LPRGGKVTISVQDSKNENIFSLKINGNL 157
             +I   L  +   +                          S     +  + ++  +G  
Sbjct: 849 PTQIDQILANLCVNARDAIDGVGKIVIETSKVSITDSPDQNSEARPGDYVVLAVSDDGKG 908

Query: 158 ARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F  +            +D    +    V  +  +NK  +  +            L K
Sbjct: 909 MDFQTQENLFEPFFSTKDVDKGTGLGLAMVYGIVKQNKGFITVQSEVGQGAAFKIHLPK 967


>gi|146305870|ref|YP_001186335.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574071|gb|ABP83603.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 1165

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 60/240 (25%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+       +    A   + + H+I +P+ AI     L  +  ++      +     + 
Sbjct: 431 MARAKALAEQAAQAKADFLANMSHEIRTPMNAIIGMSHLALKTDLDPRQRDYLNKIQQAG 490

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------------KRVQVSW 104
                     +  +    G V       D+EQV+++   +              R     
Sbjct: 491 QHLLGVINDILDFSKIEAGKVRVECIEFDLEQVLDNLANLIGDKAAGKGLELLFRRDAQV 550

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160
               +       +IL+N    A      G              +   +FS++  G     
Sbjct: 551 PCVLLGDPLRLGQILINYANNAVKFTEHGEVEVSIELEKRDGKQVWLLFSVRDTGIGLSP 610

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ +                 +       LA      +  +            L 
Sbjct: 611 AQ-QARLFESFQQADSSTTRRYGGTGLGLAICKRLAEAMGGEVGVDSELGRGSRFWCRLP 669


>gi|75907228|ref|YP_321524.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700953|gb|ABA20629.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 646

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%)

Query: 4   NICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDE 48
                L    L                + + HD+ SP+ AI    +LL     +      
Sbjct: 402 ERDQLLQLEKLARAEAEAANQTKDEFVAMVSHDLRSPLNAILGWSQLLRTRQLDESTFTR 461

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIEQVIEDF----IAV 96
            ++ I  ++ S    L+ +                 V+    +G   +            
Sbjct: 462 ALETIERNAQSQSKLLEDLLDMSRILRGKLQLEFCLVELPAIIGVAIETAYPSAKAKDIH 521

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            K V                ++L NL   A    P  G++T+ +  + +E   ++   G 
Sbjct: 522 LKSVIDESIPLIPGDINRLLQVLGNLLSNAIKFTPPEGQITVQLSYTDSEAHITVIDTGI 581

Query: 157 LARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSAL 212
             +       F +    + +       +       L   +   +      +      +  
Sbjct: 582 GIKSEFLPYVFERYRQADCQHKQHGLGLGLAIARYLIELHGGAIHVNSLGEGQGTTFTIK 641

Query: 213 LE 214
           L 
Sbjct: 642 LP 643


>gi|163938275|ref|YP_001643159.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163860472|gb|ABY41531.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 337

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 62/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + + +   
Sbjct: 95  LEKGQIEARKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQEYLEILYK 154

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 155 KSNDLKHLVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 214

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            T   I       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 215 STSPIIADHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYEILIWDKGPGIPKHDL 274

Query: 164 FTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                           +     +       L  +N  R+  + I          + K
Sbjct: 275 QNVFKRMYRSEQSRNPSYGGSGLGLSISKALVEKNGGRIWVDSIPWERTTFGFSVPK 331


>gi|85704542|ref|ZP_01035644.1| two-component sensor [Roseovarius sp. 217]
 gi|85670950|gb|EAQ25809.1| two-component sensor [Roseovarius sp. 217]
          Length = 454

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 16/238 (6%), Positives = 59/238 (24%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            +      +++++ +   + + H++ +P+ +I  SL+L++             V+ +   
Sbjct: 215 KQENERAKAALEVKSQFLATVSHELRTPLTSIMGSLDLVNSGVLGEVPEKLKHVIGIAAK 274

Query: 56  SSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +       +  +                    +      +                +   
Sbjct: 275 NGHRLANLIDDLLDLQKIEAGEIVFHFKPLNANELVDEAVESTTGYAGKLGIQVTTIHCE 334

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +       +++ NL   A       G V + V+        S+   G      + 
Sbjct: 335 EDCRFLGDRSRLIQVMNNLLSNALKFSHERGTVRVRVEALGTRIRISVHDEGVGI-PKDA 393

Query: 164 FTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++     +        +    +       +   +   +            S   ++
Sbjct: 394 KDRVFGKFSQVDSSDVRKVGGTGLGLNISKQIVERHNGTIDYVSELGVGSTFSIEFDR 451


>gi|323699591|ref|ZP_08111503.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. ND132]
 gi|323459523|gb|EGB15388.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 434

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/251 (9%), Positives = 61/251 (24%), Gaps = 40/251 (15%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSL---------------ELLDEVGIE 46
           +     L   +   +   S + H++ +P+ A+                   E L +  + 
Sbjct: 180 RERTRELDRANRAKSEFLSTVSHELRTPLTAVLGFAKVTSRKLVNSIFPAVERLADPNLR 239

Query: 47  DEV------MQLIRLSSMSAIIRLKF-MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
            ++      +++I        + +   + LA      V+ ++     E  I   + V   
Sbjct: 240 KDMEVVRRNLEIIAGEGQRLTLLINDVLDLAKMEAHRVEYVMAPVSPEAFIRKSVEVTSA 299

Query: 100 VQVSWT-----------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI 148
           +                      +    ++++NL   A    P+G     +         
Sbjct: 300 LFEDTDLTLRLDLEPDLPLVNGDADRLMQVMVNLISNAVKFTPQGVITCAAHVVDGT-VR 358

Query: 149 FSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
             +   G   R         +                +       +   +   +  E   
Sbjct: 359 VGVTDTGVGIRPELLQAIFEEFTQVGEHLSDRPAGTGLGLTICKHIVEGHGGHIWAESRP 418

Query: 204 DHNVVLSALLE 214
            H       L 
Sbjct: 419 GHGSTFLFTLP 429


>gi|295108591|emb|CBL22544.1| Signal transduction histidine kinase [Ruminococcus obeum A2-162]
          Length = 348

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 57/213 (26%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  E    +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSQEQEGYVEKILFNTKRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTKYRLDEQIRQAFLSLESKWTEKEIGFQVELEEVKYTGNEGLLMHIWMNLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  KN   F ++  G           F +    +     + + +
Sbjct: 248 NAIKFSPAKGTITMFLKQEKNSVKFIVEDEGPGIEEDVKARIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSVGGTIKAENREYGGCRFVVELP 340


>gi|291543506|emb|CBL16615.1| Signal transduction histidine kinase [Ruminococcus sp. 18P13]
          Length = 472

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 63/215 (29%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF-----------MR 68
           S + H++ +P+ AI    E L+  G  + + + IR+ +       +              
Sbjct: 253 SSVSHELRTPLTAIKGWAETLNAGGDMETMHKGIRVITNETERLSRMVEELLDFSRMQSG 312

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAKILLNLFM 124
                   +D L  LG+   +  +    +    +     +            ++ +N+  
Sbjct: 313 HFTMQMDKMDVLAELGEAVLIYTERARREHIEILYNEPEFLPIVYGDKNRIRQVFINIID 372

Query: 125 VAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179
            A          ++T + +D        ++  G   +  +     T+    N        
Sbjct: 373 NAIKYSNPGGKVQITATQKDEGKTVCIVVEDQGVGIKASDLPKIKTKFYKANHSRR--GS 430

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I       +  ++  RL     +     ++  + 
Sbjct: 431 GIGLGVADEIIRQHGGRLEIASAEGVGTTVTIDIP 465


>gi|212704722|ref|ZP_03312850.1| hypothetical protein DESPIG_02785 [Desulfovibrio piger ATCC 29098]
 gi|212671849|gb|EEB32332.1| hypothetical protein DESPIG_02785 [Desulfovibrio piger ATCC 29098]
          Length = 547

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 67/232 (28%), Gaps = 21/232 (9%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSL--------ELLDEVGIEDEVMQ 51
           + +   +     L A+  L + + H+I +P+ +I            E  ++      +++
Sbjct: 288 RRLEEEIRRKEKLAAVGTLAAGVAHEIRNPLSSIKGYATYFGMRFPEGSEDRKAAGVMVR 347

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGE 107
            +   +      +   R +     +      +  + ++I           V+        
Sbjct: 348 EVERLNRVISELIGLSRPSDVRPVAAPLEDSVAHVLRLIAQDAEKRGVRLVNDLPADLPP 407

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    + LLN+ + A  ++P GG +T+     K   + S+   G     PE    I
Sbjct: 408 ARMDPDRLGQALLNICLNALDAMPDGGTLTLGCTVEKQHLVLSVTDTGQGI-APENLNHI 466

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-----DHNVVLSALLE 214
            D    +      +    V  +    +  +                    L 
Sbjct: 467 FDPYFTTKGHGTGLGLATVHKIVEALEGEVYVRSRQATADTPGRTTFFIRLP 518


>gi|203284657|ref|YP_002222397.1| sensory transduction histidine kinase, putative [Borrelia duttonii
           Ly]
 gi|201084100|gb|ACH93691.1| sensory transduction histidine kinase, putative [Borrelia duttonii
           Ly]
          Length = 386

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 75/235 (31%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIR 54
                    +  L A       I H+I +P+GAI  +L+LL +   +  +         +
Sbjct: 138 KHKEELFRRAEALAAFTRHARNIAHEIKNPLGAIDINLQLLKKEIDKQNIESTKTNHYFK 197

Query: 55  LSSMSAIIRL----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +                   + +++        D +  + ++         +   + +  
Sbjct: 198 IIKEEINRMDKTVTDFLLTVRPIKIMPQKKDISDIIKSVYNLLNPELKNKNIKFILSLKK 257

Query: 105 TGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160
               +   +   ++++N+   A  +L     +  K+ IS+ +++N    S+K N N    
Sbjct: 258 VSFVLIDEKLIRQVIINIVKNAEEALLESNKKIKKIEISIHENENNIYVSIKDNANGI-T 316

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            E    I      +  +   I       +  E+   +  E  +      +  L K
Sbjct: 317 NETKDDIFKPQFSTKENGSGIGLTISYKIVKEHGGEIFVESKEMKGTSFTITLPK 371


>gi|254453564|ref|ZP_05067001.1| periplasmic sensor hybrid histidine kinase [Octadecabacter
           antarcticus 238]
 gi|198267970|gb|EDY92240.1| periplasmic sensor hybrid histidine kinase [Octadecabacter
           antarcticus 238]
          Length = 543

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 64/241 (26%), Gaps = 30/241 (12%)

Query: 1   MAKNICFN-LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           M K      +++  + A   + + H++ +P+  I+ +L LL    I    +   + + + 
Sbjct: 297 MQKRYAARAMTAERVQAQFLATVSHELRTPLTVINGALGLL---NIHPSKLTAEKSTHLI 353

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------- 112
           ++       LA      +D          +  +   V   +  +    +           
Sbjct: 354 SLALKNSAILAKLVNDLLDMQKLESSEFTLNLEICDVSDIISGAVASMETFKYKGNVKLR 413

Query: 113 --------------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                             ++++N+   A         V + +    +    ++K  G   
Sbjct: 414 FDRKPSGVMILADKIRMHQVVVNVISNAIKFSEENSVVEVCMNAEGDTVQITVKDTGRGI 473

Query: 159 RFPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +             D        +  +    +  ++   +          + +  L
Sbjct: 474 PAGSEEKVFGQFLQVDGSDDKDVYGSGLGMHISRQILSQHGGTIGYASELGVGTLFTITL 533

Query: 214 E 214
            
Sbjct: 534 P 534


>gi|170765897|ref|ZP_02900708.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
 gi|170125043|gb|EDS93974.1| aerobic respiration control sensor protein ArcB [Escherichia
           albertii TW07627]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFVLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D      F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGEMLHFDVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTI 503


>gi|146309157|ref|YP_001189622.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145577358|gb|ABP86890.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 362

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 64/235 (27%), Gaps = 26/235 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                LS  +   LL   + H+I +P+G I  + +LL      +E+     +    A   
Sbjct: 122 KEEAQLSKQETTKLLVRGLAHEIKNPLGGIRGAAQLLSRELPNEELKDYTNVIIEEADRL 181

Query: 64  LKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +    G          +    L  +  +IE        +   +     DL  +R ++
Sbjct: 182 RNLVDRMLGSNKLPSLAMTNVHEVLERVANLIEAESQGGITLVRDYDPSIPDLLIDREQM 241

Query: 119 LLNLFMVAHASLPRGGKVTIS-------------------VQDSKNENIFSLKINGNLAR 159
           +  +  +   ++                                +      +  NG    
Sbjct: 242 IQAVLNIVRNAMQAIAGQKHDMGLGRISLRTRTLRQFTIGHTRHRLVVKVEIIDNGPGI- 300

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE    I    V    D   +       +  +++  +  E    H  V S  L 
Sbjct: 301 PPELQETIFYPMVSGRADGTGLGLAITQNIISQHQGLIECESHPGH-TVFSIFLP 354


>gi|94263208|ref|ZP_01287025.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456426|gb|EAT06546.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 576

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 18/226 (7%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMS 59
              L S  L A+  L + I H+  +PI  I N L+ L         + E++ L       
Sbjct: 337 RQLLHSEKLSAVGKLAASIAHEFNNPICGIRNVLQGLQRRLDPAPADRELLDLALRECDR 396

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--------DL 111
                  ++     + +    + +    + I      +                     +
Sbjct: 397 VARLTHDLQSFNRPSTAELVRLDIHTALEDILLLCKKELESHNIEVRRHFAAELPPILGV 456

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  ++ LNL   A  ++  GG V              ++  NG      +    I + 
Sbjct: 457 PDQLKQVFLNLLTNAREAIGPGGGVVTITTAAEGAGITVTIGDNGCGIAENDLPQ-IYEP 515

Query: 171 NVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +    +       +   +  R+               L 
Sbjct: 516 FFSTKSAVKCTGLGLSVSYGIIQRHGGRIKVVSEPGRGTEFIIRLP 561


>gi|87118404|ref|ZP_01074303.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
 gi|86166038|gb|EAQ67304.1| probable sensor/response regulator hybrid [Marinomonas sp. MED121]
          Length = 1317

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 71/248 (28%), Gaps = 35/248 (14%)

Query: 2   AKNICFNLSSM-DLV-------------ALLCSRICHDIISPIGAIHNSLELLDEVGIED 47
           A++I   L    +L              +   + + H++ +P+ A+   LEL+ +  +  
Sbjct: 747 ARDINDRLKKEHELATAKERADIASEAKSHFLANMSHELRTPMNAVIGLLELVKKTSLSP 806

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------- 97
                I  + ++A   LK +     ++    + + +   E  +   I             
Sbjct: 807 VQSDFIDKTQVAAHSLLKILNDILDFSKIEANSMLVEKHEFQLSSLIDEMALILSASLTT 866

Query: 98  ------KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
                   +  +        + +  +ILLNL   A     +G  +      S+NE    +
Sbjct: 867 KDIEVLFDIDDNLPETIQTDALKLKQILLNLGSNAIKFTQKGHVLISIKMLSENEISMCV 926

Query: 152 KINGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           + +G      +      D      ++        +       L       +  E      
Sbjct: 927 EDSGIGMNPEQLEHIFTDFKQAEASINRRFGGTGLGLAITKKLIELMDGSIRVESHLGKG 986

Query: 207 VVLSALLE 214
                 L 
Sbjct: 987 TSFHVQLP 994


>gi|146279078|ref|YP_001169237.1| multi-sensor hybrid histidine kinase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557319|gb|ABP71932.1| PAS/PAC sensor hybrid histidine kinase [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 850

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 70/236 (29%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L+     A   + + H++ +P+  +  S+ELLD+  ++    +L+ +   SA
Sbjct: 352 LTEARDQALAGEQARADFLAVMSHEMRTPLNGLAGSVELLDQTPLDMRQRELVSVLRASA 411

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------- 113
            I L  +        S         ++  ++  +A     Q  +     +          
Sbjct: 412 QILLDHVNSVLDIARSEARPSEAEMVDYDLDRLVAECIANQSGFAAVVGNRIDLRAITGP 471

Query: 114 ---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +++LNL   A       G++ +  +         +   G     PE  
Sbjct: 472 VGLLNGEPARLRQVILNLLNNAVKFTRN-GRIIVETEVMGGTLEIRVLDTGIGI-APENQ 529

Query: 165 TQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I D  V              +       LA      L  E    +    +  L 
Sbjct: 530 EKIFDDFVTLDASYERRSGGTGLGLGIARRLARIMGGDLTVESAPGNGSRFTLRLP 585


>gi|329889024|ref|ZP_08267367.1| response regulator [Brevundimonas diminuta ATCC 11568]
 gi|328844325|gb|EGF93889.1| response regulator [Brevundimonas diminuta ATCC 11568]
          Length = 1127

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 27/241 (11%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVM 50
           A  +      ++  +       + + H++ +P+ ++    +LL +           +   
Sbjct: 444 ASALTLKARELEQASQYKSDFLANMSHELRTPLNSLLILSKLLADNPEGTLSEDQVNYAR 503

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------- 103
            +    +    +    + L+    G + +      ++++ ED   + + V          
Sbjct: 504 TIQSSGNDLLALINDILDLSKIEAGHIQARPEAVSMQRLTEDVRQLFQPVADDRGLAFDI 563

Query: 104 ----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                        +   +IL NL   A      G           +   F++   G    
Sbjct: 564 ELDAGADLMETDRQRLEQILKNLLSNAFKFTESGKVKLSISAQPGDRIAFAVSDTGIGIS 623

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++          DG +        +       LA     R+  E       V +  L 
Sbjct: 624 PEQQKGVFDAFQQADGTISRRYGGTGLGLSISRELARLLGGRIRLESRLGEGSVFTLSLP 683

Query: 215 K 215
           +
Sbjct: 684 R 684


>gi|313649669|gb|EFS14093.1| sensor kdpD domain protein [Shigella flexneri 2a str. 2457T]
 gi|332763311|gb|EGJ93551.1| sensor protein kdpD domain protein [Shigella flexneri K-671]
 gi|333021415|gb|EGK40665.1| sensor protein kdpD domain protein [Shigella flexneri K-304]
          Length = 610

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 365 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 423

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 424 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMPEPGLSSPINLSLPEP 483

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 484 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 543

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 544 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 596


>gi|315037994|ref|YP_004031562.1| histidine kinase [Lactobacillus amylovorus GRL 1112]
 gi|325956446|ref|YP_004291858.1| histidine kinase [Lactobacillus acidophilus 30SC]
 gi|312276127|gb|ADQ58767.1| histidine kinase [Lactobacillus amylovorus GRL 1112]
 gi|325333011|gb|ADZ06919.1| histidine kinase [Lactobacillus acidophilus 30SC]
          Length = 483

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + ++     +         +   H++ +P+  I+  LE L         + + + L++  
Sbjct: 240 LKQSNEEVKAQEKRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKSIALMQRE 299

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I                + L      +   L  L        +    +  V     
Sbjct: 300 TKRLIRLVNENLDYEKIRNNQINLIKTNFNATPILQDLKSQLSQNAEKANDELEVIAPDD 359

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
                      ++++NL   A      G       +        S+K NG      +   
Sbjct: 360 LPIYADRDRFTQVMVNLVQNAIQFTHDGKIEIKGERMVHATV-LSVKDNGIGMSKDQIKY 418

Query: 164 -FTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            F +    +            +    V  L  ++  ++  E         + +
Sbjct: 419 IFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVTVESEPGKGSTFTVV 471


>gi|310823673|ref|YP_003956031.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396745|gb|ADO74204.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 372

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 69/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     +  +  V  L + + H++ +P+  I   L L        E+   +        
Sbjct: 148 AQTELVAVERLATVGRLAAGVAHEVGNPLAGILGYLSLARMRATTPELKDFLDRIDHEVH 207

Query: 62  IRLKFMR-------LAFGYTGSVDSLIGLGDIEQVI---EDFIAVDKRVQVSWTGEKIDL 111
                +R          G    VD         +++    +   V+    +         
Sbjct: 208 RIDGIVRGLLDLGRPRSGPLAPVDMGQVAETCVRLVSAGPELSRVEVSFALEPGLLARAD 267

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
               ++I++NL + A  ++   G V +S +    E   +++  G      E   ++ +  
Sbjct: 268 PGPLSQIVINLLLNAAQAMGGEGAVRVSTRREGGEVWLAVEDGGPGL-SAEVMARLFEPF 326

Query: 172 VESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +       +     + LA     RL+ E I       +  L
Sbjct: 327 FTTKDGKGTGLGLAVSLHLAQGMGGRLVAENIPAGGARFTLCL 369


>gi|298485410|ref|ZP_07003499.1| two-component sensor PilS [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298160060|gb|EFI01092.1| two-component sensor PilS [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 530

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 296 SQITHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L           A ++ + V  +   +   
Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVTEFRSSSAPNQSIHVDISPGTLTTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            R        + +      +  I  ++ +G         
Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHL- 474

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++ +    +      +  Y    L   N+  L           L   
Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522


>gi|295085981|emb|CBK67504.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./Response regulator
           receiver domain. [Bacteroides xylanisolvens XB1A]
          Length = 797

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 67/236 (28%), Gaps = 27/236 (11%)

Query: 4   NICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIR 54
                 S      LL SR      I HD+ SP+  I  + ELL E        E ++ I 
Sbjct: 299 EKELEASDERNRELLQSRKDMMLSIAHDLRSPLSTIKGAAELLPEESVPECRSEYLESIS 358

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------QV 102
            +S   +  ++ +   +      +         + +   +A +  +             +
Sbjct: 359 HASDYMLTLVETLMNFYLLNTEQNRSQISVYNLESLFKEVADNFVLQARKKDLRFSSEFL 418

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                      +  +I+ NL   A     +GG + +S +    E  FS++  G      +
Sbjct: 419 DMNIVVSGDRGQLQQIISNLIANALKFTEKGG-ICLSAEYHGGELRFSVQDTGCGMDSKD 477

Query: 163 KFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I            +    +       L       +  E           +L 
Sbjct: 478 -TERIFTAFERLENARNVPGFGLGLTISYRLVSRMGGNIRVESRPGEGSTFIVILP 532


>gi|262191169|ref|ZP_06049370.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae CT
           5369-93]
 gi|262032944|gb|EEY51481.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae CT
           5369-93]
          Length = 497

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIR 54
           A     N+ +          L + + HD+ +P+GAI  S   L +  +    +   +L+ 
Sbjct: 253 AHRTLANVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLT 312

Query: 55  LSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             +       + +                    V+    +G +   +   +   K    S
Sbjct: 313 SIAEQGERLNRSLTKLLDITRYTATALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIES 372

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S    ++L+NL   A    PRG  + I+    + +   ++  NG      E 
Sbjct: 373 QPMLVELDSLLIEQVLINLVENAAKYTPRGSDIEIACAYQEQQFTLAVMDNGAGI-PDEA 431

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D          D   +      ++   ++  +     +      +  + 
Sbjct: 432 LPRIFDRFYRVEGHHADGTGLGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|255326450|ref|ZP_05367532.1| periplasmic sensor signal transduction histidine kinase [Rothia
           mucilaginosa ATCC 25296]
 gi|255296490|gb|EET75825.1| periplasmic sensor signal transduction histidine kinase [Rothia
           mucilaginosa ATCC 25296]
          Length = 552

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 21/212 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLK------FMRLAFG 72
            H++ +P+ AI    ++L             +  I   +      ++       +     
Sbjct: 333 SHELRTPLAAIKGYSDMLRWTEPLSESGQSSLARIDSQTERMSRLVEDLLTLARLDEGRE 392

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VAHAS 129
                  L  L           A      ++   E +++  +R++I   +      A   
Sbjct: 393 PKFEQVDLTELVLECTSDMQAAARTHEWHLNLPDEPVEVVADRSQIQRVILNLLSNARKH 452

Query: 130 LPRGGKVTI--SVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES-TIDSH-DIQ 182
              G +VT   SV  ++ E + ++  NG           F +    +      D    + 
Sbjct: 453 TDGGTRVTAGLSVDAARREAVVTVADNGPGIAPDFLPKIFDRFTRADKARSGSDGTTGLG 512

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  +   +   +  +    H  V +  L 
Sbjct: 513 LAIVQAIVQAHGGSIQVQSQPGH-TVFTVRLP 543


>gi|229109013|ref|ZP_04238614.1| hypothetical protein bcere0018_12860 [Bacillus cereus Rock1-15]
 gi|228674482|gb|EEL29725.1| hypothetical protein bcere0018_12860 [Bacillus cereus Rock1-15]
          Length = 423

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSPSNKELFKNLLIPELDRA 245

Query: 61  IIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLSLSKTREFKREPFPINTFLREYIQQLLVSEVSLHNISIDYNFSNELDDILVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + I+     N    +   NG     P     I 
Sbjct: 306 IDRYELVQVFLNLFQNAVDAQGDKPLSIQITSYRLDNFVRITFTDNGIGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      +     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMTSASN-GTTFTISIP 409


>gi|167767697|ref|ZP_02439750.1| hypothetical protein CLOSS21_02232 [Clostridium sp. SS2/1]
 gi|317499121|ref|ZP_07957399.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167710714|gb|EDS21293.1| hypothetical protein CLOSS21_02232 [Clostridium sp. SS2/1]
 gi|291560829|emb|CBL39629.1| Signal transduction histidine kinase [butyrate-producing bacterium
           SSC/2]
 gi|316893590|gb|EFV15794.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 452

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/234 (8%), Positives = 66/234 (28%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLS 56
            + I     + ++     + + H++ +P+  I    EL+ +       +      +   +
Sbjct: 214 ERQIKEIKEAENMRKEFSANVSHELKTPLTTISGYAELMKDGLVKPEDMPRFSATIYDEA 273

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                +    ++L+      V+                  +       +  + +     K
Sbjct: 274 RRLISMIEGIIKLSRLDENRVELDWKDVDLYELAFSIKNDLKRRSEEENVAIHIRGIHTK 333

Query: 109 IDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           I    +   ++  N+   A      GG+V  ++    +     ++  G      +   +I
Sbjct: 334 IRGVTQILYEMFFNVCENAIKYNHPGGEVVFTISKMGDYPTVIVEDTGIGIPKEDI-DRI 392

Query: 168 VDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +          +  +   +    V   A  +   +  E        ++ +  +
Sbjct: 393 FERFYRVDKSHSNQKEGSGLGLSIVKHGAKFHHAEMEVESEVGKGTKITVVFPR 446


>gi|153869800|ref|ZP_01999325.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073728|gb|EDN70669.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 652

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 54/224 (24%), Gaps = 26/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H++ +P+ AI    E+L E   + E  + I             + L      
Sbjct: 142 SQFLANMSHELRTPLNAIIGYSEMLAEEAEDLEQEEFIPDLHKIKTAGNHLLGLINDVLD 201

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------------------AK 117
                 G  ++     D   +   V  +        +                      +
Sbjct: 202 LSKIEAGKMELLIEPIDLNILMDEVISTTQPLIEKKANNFDIKRSQQLGEIQTDITKLRQ 261

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +LLNL   A     +G        ++     F +  NG      E+  ++          
Sbjct: 262 MLLNLISNAAKFTEKGTISLNIQSEADL-IKFCVTDNGIGM-TEEQQAKLFQPFTQADAS 319

Query: 173 -ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +        A      +            S  L +
Sbjct: 320 TTRRFGGTGLGLTITKQFAEMMGGSISVTTEFGKGSTFSISLPR 363


>gi|170740240|ref|YP_001768895.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium sp. 4-46]
 gi|168194514|gb|ACA16461.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium sp. 4-46]
          Length = 584

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 67/246 (27%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEV 49
           M  N    L   DL         +   + HD+ +P+  I    E+L +         + +
Sbjct: 333 MRANRRLALQRSDLRRANQLKTEILGTVAHDLKNPLAVILGRAEMLGDLVGTLPQPVEAM 392

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE--------------DFIA 95
              +     SA      +        +    I L                      +  A
Sbjct: 393 RAQVGHIRESARRLTGMIESLIADAMNDALDITLRREPVDFAALAREVAQSNAPLAETKA 452

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
              R ++  +           + + NL   A    P GG++ + V   + + +F+++  G
Sbjct: 453 QHLRTEIPASLFICGDGERLREAMDNLVSNAIKYSPNGGEIVVGVAQDETDTVFAVRDFG 512

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVV 208
                PE   ++                S  +    V  +A  +  R   E         
Sbjct: 513 PGL-SPEDQGRLFGRFQRLSAKPTGGEGSTGLGLSIVKRIAELHGGRATAESHAPGAGST 571

Query: 209 LSALLE 214
            +  L 
Sbjct: 572 FAIRLP 577


>gi|126656186|ref|ZP_01727570.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
 gi|126622466|gb|EAZ93172.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR
            activity [Cyanothece sp. CCY0110]
          Length = 1191

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 52/229 (22%), Gaps = 31/229 (13%)

Query: 16   ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------L 64
            +   + + H+I +P+ +I    +LL    +  +    I +   ++               
Sbjct: 816  SEFLANMSHEIRTPMNSICGFSDLLLRSQLNPKQRHWIEILQANSNRLLALINDILDFSK 875

Query: 65   KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKIL 119
               R         +    L ++                  ++       I       ++L
Sbjct: 876  IEARKLHLNPREFNLETLLQEVRFSFTPQAERKGLQLTHEIEPDVPRHLIGDDFRLQQVL 935

Query: 120  LNLFMVAHASLPRGGKVTISVQDSKNENI--------FSLKINGNLARFPEKFTQIVDGN 171
             NL   A      G       Q  + E          FS++  G     P+    +    
Sbjct: 936  SNLVSNAIKFTETGEVKIAVSQQGETEVNGGIIVPLRFSVQDTGIGI-SPDAQENLFQPF 994

Query: 172  V------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +       +       +  +   D        + 
Sbjct: 995  TQVDSSATRRYGGTGLGLTICRRIVQLMGGEIHVDSEVDVGSTFWFTVP 1043


>gi|113953374|ref|YP_729924.1| sensor histidine kinase [Synechococcus sp. CC9311]
 gi|113880725|gb|ABI45683.1| sensor histidine kinase [Synechococcus sp. CC9311]
          Length = 483

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 63/238 (26%), Gaps = 26/238 (10%)

Query: 3   KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIR--- 54
           K     +  + L +       S I H+  +P+  I   ++ +L+    + E  Q      
Sbjct: 241 KEFNEMVERLRLSSSNQKQFASTISHEFRTPLTVISGFIQSVLNRGEDQLEDQQKKALGI 300

Query: 55  ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                   +      L   R           +  L    + +           ++    +
Sbjct: 301 ADKEVLRLNRMLSDLLDLSRADNQQLSIRREIFELIPSLEQVLKLANAAYDNPITDNLRE 360

Query: 109 IDL------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
           +             + + NL   A     +G  + + V    ++   S+   G       
Sbjct: 361 LPYLEVVGDPDRLVQCIGNLIGNAVKYSGKGSPIDLQVSSDDSKVTVSVSDRGQGIPTDQ 420

Query: 161 ----PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E+FT+     + S   S  +    V +L       +          + S  L 
Sbjct: 421 LDNIFERFTRAKGVVLPSGESSTGLGLSIVKMLMEAMGGTVSVCSTVGEGSIFSLQLP 478


>gi|42524788|ref|NP_970168.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576998|emb|CAE78227.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 734

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 60/240 (25%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L +  + +   + + H+I +P+  I    E+L +   E  + + I++   SA
Sbjct: 219 LVEARNEALQASHMKSSFLANMSHEIRTPMNGILGMTEVLLDQNPESGIKKKIQIIRESA 278

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +                     +  ++     +   +            + +   V    
Sbjct: 279 LNLLSLINGILDLSKIESGKLELEESYFEPRKLVQEVINTVEYSAKSKGLDLHASVSEQT 338

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARF 160
                       +IL+NL   A      G       +     S+      +K  G     
Sbjct: 339 PAAFSGDVLRLRQILINLLGNAIKFSSEGTVSLIVNSFRSDQSRTMLQIQVKDQGLGMDE 398

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +I                   +       L      ++  E   +   +    L 
Sbjct: 399 ATLK-KIFSPFEQADKSTTRKFGGTGLGLSITKQLVELMNGKIEVESKPNEGSIFWVTLP 457


>gi|163845790|ref|YP_001633834.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523498|ref|YP_002567968.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163667079|gb|ABY33445.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447377|gb|ACM51643.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 762

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 61/229 (26%), Gaps = 25/229 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIR 63
            +  L     + + H++ +P+  I    ++L             E +  +R +S++ +  
Sbjct: 521 RADRLKTGFLATVSHELRTPLTTIIGYTDMLRRGVLGELSPEVQETLHYMRQASLNLMRL 580

Query: 64  LKFMRLAFGY------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +  +                    SV     +G ++  I +                   
Sbjct: 581 ISDILEFSRMEAGQLIIDIEPVPVSVIVQNVVGQMQPQIREHQLHLMVNIPPDLPMIQAN 640

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +    ++L+NL   A       G + I  +        S++  G      +   +I +  
Sbjct: 641 AGRLEQVLINLLSNAIKFNRPQGLIEIKAETRGEWVRISVRDTGIGIAPAD-QERIFEEF 699

Query: 172 VE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    ++    +       L      ++  +            L 
Sbjct: 700 ERVKQKNGHSVSGVGLGLAICRRLIQHMGGKIGVKSTPGEGSTFFCDLP 748


>gi|330891577|gb|EGH24238.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 392

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 158 SQITHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 217

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L +            + V V  +   +   
Sbjct: 218 SGRIDRVIENVLQLSRRRESQPELLDLKTWLENFVAEFRSAAMAGQSVHVEISPGTLTTR 277

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            R        + +      +  I  ++ +G      +  
Sbjct: 278 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDQQSDLPILEVQDDGPGVSEQQL- 336

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++ +    +      +  Y    L   N+  L           L   
Sbjct: 337 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 384


>gi|322368338|ref|ZP_08042907.1| signal-transducing histidine kinase [Haladaptatus paucihalophilus
           DX253]
 gi|320552354|gb|EFW93999.1| signal-transducing histidine kinase [Haladaptatus paucihalophilus
           DX253]
          Length = 460

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 64/208 (30%), Gaps = 8/208 (3%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
                +  L +     + HD+ +P+  +   +EL  E G E      +R +S    +  +
Sbjct: 247 QLREQNQRLESF-ARTVAHDLRNPLNVVQGQVELARERGDERFFDAALRAASRMDRLIDE 305

Query: 66  FMRLAFGYTGSVDSLI--GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            ++LA      +D              E    +D  + V      +       ++L NLF
Sbjct: 306 LLKLAEQGKAVLDPEPVALTDAATNAWELTDTLDATLSVDSDRRIVADETRLCQLLENLF 365

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
             A         VT+   D        +  +G      E+ T + +    +  +      
Sbjct: 366 SNAVVHAGSDVSVTVGTTDEG----IYVADDGPGIPETERAT-VFESGYTTASEGTGFGL 420

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSA 211
             V  +A  +  ++     +D       
Sbjct: 421 AIVKQIADAHGWQIAVGESEDGGARFEV 448


>gi|302062958|ref|ZP_07254499.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato K40]
          Length = 649

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           + +       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 271 LTQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRLSQGRFTEIDRYVAA 330

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 331 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSIGL 390

Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151
                +  ++    LNL + A  ++PRGG++TI   +                      +
Sbjct: 391 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCV 450

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 451 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 509

Query: 210 SALLEK 215
              L +
Sbjct: 510 CLYLPR 515


>gi|260177204|gb|ACX33927.1| putative response regulator receiver sensor signal transduction
           histidine kinase [uncultured prokaryote AT5]
          Length = 378

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/243 (8%), Positives = 57/243 (23%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           A+        ++  +       + + H++ +P+ AI    E++          + +    
Sbjct: 132 ARRREAENQRLEAASHNKSQFLADMSHELRTPLNAIIGLTEMMVSNAARFGTEKALEPLR 191

Query: 58  MSAIIRLKFMRLAFG--------------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                    + L                     V+    + ++          ++   + 
Sbjct: 192 RVNAAGTHLLSLINEVLDLSKIEAGKLELNPEPVNLARVIDEVIGTAGQLAEKNQNRLIV 251

Query: 104 WTGE----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNL 157
              +             +ILLNL   A      G       + +   +    ++   G  
Sbjct: 252 EAQDNLGAFTADPLRLKQILLNLLSNACKFTKEGDVALRVRKVADGRDWVELAVADTGIG 311

Query: 158 ARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               E+  ++     +             +       LA      +          V + 
Sbjct: 312 L-TAEQQAKLFQEFTQADSLTARRYGGTGLGLALSRKLARMMGGDVTVASEPGKGSVFTV 370

Query: 212 LLE 214
            L 
Sbjct: 371 RLP 373


>gi|281491991|ref|YP_003353971.1| two-component system histidine sensor kinase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281375700|gb|ADA65204.1| Two-component system, histidine sensor kinase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 517

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 60/209 (28%), Gaps = 15/209 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFM-----RLA 70
           + + H++ +P+ +I    ELL+              +I   S   +  ++       +  
Sbjct: 309 ANVSHELKTPLTSIKGFAELLETDSISSSDTKNFASIINKESSRLMNLVQDTLLLTKQNH 368

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVD--KRVQVSWTGEKIDLSRERAKILLNLFMVAHA 128
                 ++    + +I Q     I                         I  NL   A  
Sbjct: 369 RIDKKKINLTALIQNILQSSGPQINEKSLHLESQIEEITFKTNEPMVHSIFENLIENAIK 428

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVES-TIDSHDIQFY 184
             P  G++ +S+   +N+ IFS+  NG      +    F +    +     +    +   
Sbjct: 429 YTPANGQIFVSLHLEQNKVIFSVTDNGPGLSEIQKERIFDRFYRVDESRAEVSGTGLGLA 488

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213
            V     E    +    I       +  L
Sbjct: 489 IVEKNVQELHGTIDVVSILGKGTTFTVNL 517


>gi|262173944|ref|ZP_06041621.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus
           MB-451]
 gi|261891302|gb|EEY37289.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus
           MB-451]
          Length = 857

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLTDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      +K          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TSVTLVRSDQIRINQILFNLLNNAIKFTHQGSIRVALELIEGDPLAQLVIQVMDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L       H       L
Sbjct: 644 EEDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|255034159|ref|YP_003084780.1| histidine kinase [Dyadobacter fermentans DSM 18053]
 gi|254946915|gb|ACT91615.1| histidine kinase [Dyadobacter fermentans DSM 18053]
          Length = 454

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 72/237 (30%), Gaps = 25/237 (10%)

Query: 3   KNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQ 51
           +N      + +L  L      L S + HD+ SP+ +I N LELL     +E    D    
Sbjct: 205 QNFQIVKQNEELEKLNAEKNKLMSIVAHDLRSPLASIQNFLELLTQHDLEEEQKIDIEND 264

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------Q 101
           L+  +  +  +  K +  +      V   +   +I  + E  + +++ +           
Sbjct: 265 LLNSTKNTMAMLSKLLDWSKSQLHGVSVNMEQLNIRTLFEQTLNLERNIAARKNITLDYY 324

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              +      S     IL N+   A      GG + +  + +    + S++ NG      
Sbjct: 325 FDPSASIYADSDMMQLILRNIIGNAIKFTRTGGHIYVKAEAAGTHCLISVRDNGIGMSPE 384

Query: 162 EKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                   +     +        ++  E            + 
Sbjct: 385 KQQSIFSLNVESTFGTDNEKGVGLGLMLCMEFIRAQNGKIWLESTPGEGTCFYISVP 441


>gi|213025313|ref|ZP_03339760.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 517

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|154249563|ref|YP_001410388.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153499|gb|ABS60731.1| PAS/PAC sensor signal transduction histidine kinase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 903

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 75/227 (33%), Gaps = 18/227 (7%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------VMQLI 53
                    L AL  + +R+ H++ +PI  +   ++ L++     E           +++
Sbjct: 672 EKERKKQEKLAALGEMAARVAHELRNPISVLGGFIKRLEKNIDNPESGKKYVNIIKEEIL 731

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKI 109
           RL  +   I             + +    + D+  + ED I     +      S      
Sbjct: 732 RLEQIVNEILDFSREPRALEFTTFNINKLINDVYILHEDKIREKNILFSLETESEEIIVY 791

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  ++++NL   A  + P  GK+ +  +   +  + S+   G      +   ++  
Sbjct: 792 AEYSRIKQVIINLLQNAIEATPNNGKILVETKTKFDRVVVSVWNEGTPI-DKDTADKLFT 850

Query: 170 GNVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVVLSALLEK 215
               + +    +       +   E+K ++  E  +D     +  + K
Sbjct: 851 PFFTTKVHGTGLGLAICKKIVEDEHKGKIYHEATED-GNRFTIEIPK 896


>gi|148378897|ref|YP_001253438.1| two component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|148288381|emb|CAL82458.1| two component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
          Length = 343

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA ++      +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 108 MAHSVNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHK 167

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K ++  +  
Sbjct: 168 ILISTKRLSSLSGNILQITELENQKILPLEQKYYLDEQIRQTILLFEYEWTKKNIILDIN 227

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 228 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 287

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     D + +    V  +    +  +     +      +  L K
Sbjct: 288 KNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIEISSHEAVGTEFTVKLPK 343


>gi|117925404|ref|YP_866021.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609160|gb|ABK44615.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 674

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 61/235 (25%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +      + S+    +   + + H+I +P+  I    +LL+E  + +     + +   S 
Sbjct: 283 LRHAQQISESANRAKSTFLATMSHEIRTPLNTILGMGQLLEETDLTEMQHWCVNILGNSG 342

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +         +   +        +   I +      S 
Sbjct: 343 RALLTLINDILDLSKIEEGHLSLEHTPFDLHQLLQEVEELFTFSALAKGITLRGHFSESL 402

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +       ++LLNL   A     +G     +   +++E  FS+  +G      E+ 
Sbjct: 403 PQWVMGDPTRLRQVLLNLLGNAIKFTKQGFVELSAQTMAEDEICFSVFDSGPGI-AKERQ 461

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +I                   +       L      ++  E            L
Sbjct: 462 QEIFLPFTQADSSTTRKYGGSGLGLTISRRLVKLMHGQIQLESRLGKGSRFYFSL 516


>gi|323698979|ref|ZP_08110891.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio sp.
           ND132]
 gi|323458911|gb|EGB14776.1| integral membrane sensor hybrid histidine kinase [Desulfovibrio
           desulfuricans ND132]
          Length = 672

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 54/238 (22%), Gaps = 33/238 (13%)

Query: 8   NLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +      A +         + + H+I +P+ AI    ++L E  + ++  + + +   +
Sbjct: 274 QVRRAKQAAEVANAAKSSFLASMSHEIRTPMNAILGMADILWETELSEDQARYVDVFRTA 333

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------S 103
               L+ +      +      + L      + + +     V                   
Sbjct: 334 GENLLEILDDILDLSKIEAGHLTLEKTWFPLTEILDRTCGVIQTKASKKGLGLSCVAAPE 393

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLAR 159
                        ++L NL   A                S  D      FS+   G    
Sbjct: 394 VPARINGDPTRLRQVLFNLLGNAIKFTDAGSVAMNVDIASRDDEGVVLHFSITDTGVGVS 453

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +           D +         +       L      R+  E            
Sbjct: 454 GDKLGAIFEAFTQADSSTTRQFGGTGLGLAISKELVQMMGGRIWAESTPGKGSTFHFT 511


>gi|312111155|ref|YP_003989471.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
 gi|311216256|gb|ADP74860.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. Y4.1MC1]
          Length = 431

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 77/223 (34%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           +        M+ V+ L + I H+I +P+ A    ++LL++  +  E  +           
Sbjct: 191 RKRIIRAEKMEAVSHLAASISHEIRNPLTAARGFMQLLEQHHLSPEKRKQYVRIAIEELD 250

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLS 112
            +  I   ++  A     S++ L    +IE+VI+    +     V           I   
Sbjct: 251 RAEAIITDYLTFAKPAPESIEKLNVKTEIERVIDLLRPLANMNSVEVKTTLAPFTIIGER 310

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  + LLN+   A  ++P GG + I V   K   +  +   G      E+  ++ +   
Sbjct: 311 EKFRQCLLNIMKNAIEAMPNGGVLQIYVSIEKQHVLIRITDTGIGM-TKEQIERLGEPYF 369

Query: 173 EST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  I    +    V  +       +  +        +S  L 
Sbjct: 370 TTKGIKGTGLGMMVVYRIIESMNGTIHIKSEIHKGTEVSIYLP 412


>gi|300864985|ref|ZP_07109816.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300337020|emb|CBN54966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1629

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 59/214 (27%), Gaps = 21/214 (9%)

Query: 22   ICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIR-LKFMRLAFGYT 74
            + H++ +P+  I  SL L+       +      ++++  L +   +      + L    +
Sbjct: 1410 VSHELRTPLTGIQMSLGLIKTGVYDRKPEKARRMIEIALLDTHRLVNLVNDILDLERIDS 1469

Query: 75   GSVDSLIGLGDIEQVIEDF---------IAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            G       +     +I+                 +      +         + L NL   
Sbjct: 1470 GRAVLEKTVCKAADLIQQAVDGIQAIATQQQISLIITPTDVKVWAAPDTIIQTLTNLLGN 1529

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHD 180
            A    P    + +S ++  +  +F ++  G      +    F +    +           
Sbjct: 1530 ALKFSPPHSTIHLSAENQADFALFQVRDRGRGIPADKLELIFGRFQQVDASDSREKGGTG 1589

Query: 181  IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       +   +  ++  E I          L 
Sbjct: 1590 LGLSICQSIIERHGGKIWVESILGEGSTFFFTLP 1623


>gi|298375314|ref|ZP_06985271.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
 gi|298267814|gb|EFI09470.1| two-component system histidine kinase [Bacteroides sp. 3_1_19]
          Length = 771

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 64/232 (27%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           A+        M L  +  + + H+I +P+ AI    +LL+     E   + E + LI  +
Sbjct: 532 ARRKAEESDRMKL--VFLANMSHEIRTPLNAIVGFSQLLNSDMPLEPEEKAEFIDLITKN 589

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           S   +  +             M  ++        +  +    Q++       K       
Sbjct: 590 SDLLLKLINDILDLSRIESGSMSFSYENLDLSKLMGDIFHTHQLMMPEGVELKIRVPHEP 649

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++  N    A     +   ++   +       + S+K  G      +K 
Sbjct: 650 LIIRSDHFRLTQVCTNFINNAVKFTAKGYIEIGYELSADGKSILISVKDTGKGI-PDDKK 708

Query: 165 TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +     +       +       + H     +  E         +  L 
Sbjct: 709 EKVFERFQKLDEFAQGTGLGLAICQSIVHTFHGSISLESEVSVGSKFTISLP 760


>gi|270293653|ref|ZP_06199855.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275120|gb|EFA20980.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 531

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 54/224 (24%), Gaps = 18/224 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSSM 58
           AK+   +L  +    L  + + H+I +P+ +I     +   LD+     E + +++ ++ 
Sbjct: 302 AKDKAEHLDRLKSAFL--ANMSHEIRTPLNSIVGFASIIAELDDREERQEYLAIMQENTE 359

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGE 107
             +  +  +                          +  +  ++                 
Sbjct: 360 LLLQLISDILDLAKIEAGTLDYNMGYVDVSDFCKDVMRNYDIKEDKAVPVLLAPDLPDYR 419

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQ 166
                +   +++ N    A      G  +          +  FS+   G         T 
Sbjct: 420 IYTDKKRLMQVVTNFINNALKFTSEGQILLEYHPVEGTGQIEFSVTDTGMGIAPDAVATV 479

Query: 167 IVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                   +      +       +       +  E         
Sbjct: 480 FDRFVKLNTFAKGTGLGLSICKSIIEHLGGTIGAESELGVGSRF 523


>gi|260461547|ref|ZP_05809794.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
 gi|259032617|gb|EEW33881.1| PAS/PAC sensor hybrid histidine kinase [Mesorhizobium opportunistum
           WSM2075]
          Length = 1255

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 61/240 (25%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     + +    +   + + H+I +P+  +    ELL +  ++ +      +   S 
Sbjct: 690 LREARQRAVLADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSNLDPKQKTFTDIIVKSG 749

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDK-----RVQVSW 104
              L  +     ++              +    + D+  ++             R++   
Sbjct: 750 NALLTIINDILDFSKIDAGQLVLDPAPFNLAEAIEDVATLVSTRAKEKDLELIVRIEPRL 809

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARFP 161
               I       +I+ NL   A      G     VT     +  +   S+   G      
Sbjct: 810 GSLFIGDVGRIRQIVTNLLGNAVKFTDEGHVLVDVTGERMPTGTKLTISVTDTGIGIPEE 869

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214
           +        +          +   +       L      ++  E  +           L 
Sbjct: 870 KLKLVFEKFSQVDTSSTRRHEGTGLGLAITSRLVELMGGKIGVESAEGKGSTFWFEVTLP 929


>gi|258623945|ref|ZP_05718898.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603]
 gi|258583739|gb|EEW08535.1| sensor histidine kinase LuxQ [Vibrio mimicus VM603]
          Length = 857

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLTDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      +K          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TSATLVRSDQIRINQILFNLLNNAIKFTHQGSIRVALELIEGDPLAQLVIQVMDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L       H       L
Sbjct: 644 EEDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|229104056|ref|ZP_04234732.1| hypothetical protein bcere0019_32060 [Bacillus cereus Rock3-28]
 gi|228679400|gb|EEL33601.1| hypothetical protein bcere0019_32060 [Bacillus cereus Rock3-28]
          Length = 382

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 71/223 (31%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58
           K          + + L + I H+I +P+  +H   +LL+E       +D+ ++++ +   
Sbjct: 160 KEKLQRAEKFYIASELAASIAHEIHNPLTTVHGFTQLLNEKHASKLSQDQYLEIMLIEMQ 219

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111
                +           ++   I +  I   +++          VD +   + +      
Sbjct: 220 QIQSTINNYLSLTKPKNTLKEKIDINHILNQVKETISPLALSYKVDIKQNSTASFYINGD 279

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +    L N+      ++  GG + I++Q  K   I  +  +G      +   +I    
Sbjct: 280 PEKFRICLNNIIQNGIEAMKNGGVLQINIQKIKGNIIVDIIDSGVGMSSQQIK-RIALPF 338

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +T     +       +  E    +  E         S  + 
Sbjct: 339 YSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTRFSISIP 381


>gi|227550076|ref|ZP_03980125.1| sensory transduction histidine kinase [Enterococcus faecium TX1330]
 gi|293568563|ref|ZP_06679882.1| periplasmic sensor signal transduction histidine kinase
           [Enterococcus faecium E1071]
 gi|307287255|ref|ZP_07567323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0109]
 gi|227180793|gb|EEI61765.1| sensory transduction histidine kinase [Enterococcus faecium TX1330]
 gi|291588737|gb|EFF20566.1| periplasmic sensor signal transduction histidine kinase
           [Enterococcus faecium E1071]
 gi|306501712|gb|EFM71004.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecalis TX0109]
 gi|309386156|gb|ADO67021.1| sensory transduction histidine kinase [Enterococcus faecium]
          Length = 464

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 67/218 (30%), Gaps = 17/218 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   L + I H++ +P+  +  ++E + +    I  E +Q            +  + +  
Sbjct: 245 LRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNIEVIN 304

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE----------RAKILLN 121
                 D L         + + +  +   ++      +++  +            ++++N
Sbjct: 305 KIEAKYDHLNKTEFNIYKLIESVIENFASKIESKNLHVEIQGDNINISADKDKMNQVVIN 364

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTI 176
           L   A     + G +  S+  +K+  +  ++ NG           F +      +    +
Sbjct: 365 LLNNAIKFTQKEGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSRSRAL 424

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    V  +   +K  +  +            L 
Sbjct: 425 GGQGIGLAIVKSVIEAHKGSITVKSKLGLGTKFVIKLP 462


>gi|206580762|ref|YP_002236509.1| putative sensor protein EvgS [Klebsiella pneumoniae 342]
 gi|206569820|gb|ACI11596.1| putative sensor protein EvgS [Klebsiella pneumoniae 342]
          Length = 1080

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 62/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55
           + +     + +    +   + + H++ +P+ AI   LELL +  +     +         
Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNGGQRKEAIELAGST 642

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103
           +     +    + +    +G         D+ Q++                 +     + 
Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQITPQWSDVAQLVSQQCHTFDALAQQKGIVLHHHNALQ 702

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +   +IL NL   A         +     +   +++ E   ++  +G    
Sbjct: 703 EGIMLWLDPQALRQILNNLIGNALKFTAEGAIQVSCRLVQADETQGELTLTVSDSGCGIS 762

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    F +              +       L    + RL            +  L 
Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSHPGVGTTFTITLP 820


>gi|17230934|ref|NP_487482.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132575|dbj|BAB75141.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 865

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 57/233 (24%), Gaps = 27/233 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            I   +    L  L      H++ +P+  I    +LL     +         +       
Sbjct: 488 EIANRIKDEFLAVL-----SHELRTPLNPILGWSKLLRSRQFDAATTDRALETIERNATL 542

Query: 64  LKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              +                      +  +     +  +    E      + V     G+
Sbjct: 543 QTQLIEDLLDVSRILQGKLSLNICPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPNLGQ 602

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---- 163
            +  +    +++ NL   A      GG V I ++   ++    +   G            
Sbjct: 603 VMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQIQVIDTGKGITPEFLPYVF 662

Query: 164 -FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
            + +  DG          +    V  +   +   +  +   D      +  L 
Sbjct: 663 DYFRQADGTTTRNFGGLGLGLAIVRQVVELHGGTVQAKSPGDGLGATFTVNLP 715


>gi|84386315|ref|ZP_00989343.1| nitrogen regulation protein [Vibrio splendidus 12B01]
 gi|84378739|gb|EAP95594.1| nitrogen regulation protein [Vibrio splendidus 12B01]
          Length = 336

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL ++  +  + +  ++    A
Sbjct: 105 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLGKMLPDQSLNEYTQIIIEQA 163

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     D+  + 
Sbjct: 164 DRLRALVDRLLGPQKPGTKSEENLHQILEKVRQLVELESGSTLAIERDYDPSLPDILMDS 223

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           A++   +  +   +                    +  I  Q  K      +  NG     
Sbjct: 224 AQVEQAMLNIVSNAAQILKAQESGKITIRTRTVHQANIHGQRHKLAARIEISDNGPGI-P 282

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V        +       L  ++  ++  E    +    +  L 
Sbjct: 283 DDLKDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGN-TTFTIYLP 335


>gi|332760946|gb|EGJ91234.1| sensor protein kdpD domain protein [Shigella flexneri 4343-70]
 gi|333008033|gb|EGK27509.1| sensor protein kdpD domain protein [Shigella flexneri K-218]
          Length = 610

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 365 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 423

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 424 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMPEPGLSSPINLSLPEP 483

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 484 LTLIHVDGLLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 543

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 544 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 596


>gi|332980938|ref|YP_004462379.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
 gi|332698616|gb|AEE95557.1| integral membrane sensor signal transduction histidine kinase
           [Mahella australiensis 50-1 BON]
          Length = 471

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/229 (9%), Positives = 60/229 (26%), Gaps = 27/229 (11%)

Query: 11  SMDLVAL------LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMS 59
           S +L  L      L + + H++ +P+  I    E L +        + + + +I   +  
Sbjct: 239 SSELAKLDQMRRDLIANVSHELRTPLSLIRGYSEALKDGVVKDTEQQKQYVDIILDETAR 298

Query: 60  AIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
               +  +            +          +  +    +       ++           
Sbjct: 299 LQKLVSDLLDLSQLESGSLSINPHPFSISRCIHEICRRFEAAAAKNQIELTASADDNIIV 358

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
                   ++L NL   A    P  G++ +S +    +    +   G      +    F 
Sbjct: 359 HADEGRIEQVLYNLIQNAINHTPTHGRIIVSAEKHDGKAFIQVSDTGRGISPDDLPHIFD 418

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   G          +       +   +   +  +   + +   +  L 
Sbjct: 419 KFYKGEHNRK--GTGLGLTIARGILTAHGSDITVKSQPNQSTTFAFYLP 465


>gi|313681453|ref|YP_004059191.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313154313|gb|ADR32991.1| integral membrane sensor hybrid histidine kinase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 1088

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 67/239 (28%), Gaps = 29/239 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           +  + + + +  ++  + + H+I +P+  I    ELL +  + DE  + I +   S+   
Sbjct: 392 DKQYAMEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTELHDEQREFIDIIEKSSENL 451

Query: 64  LKFMRL----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           L+ +                                    +  E  I +   V  S    
Sbjct: 452 LEIINNILDLSKIESNKLEIEEIVFNPIDEFESAVEVYGVRASEKHIDLACYVDPSLERP 511

Query: 108 KIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
                 +  ++++NL   A              +       ++    F +K NG      
Sbjct: 512 LKGDPTKIKEVIINLLSNAVKFTNSGGAISVDIRRIECEILNRTRIRFQVKDNGIGV-TS 570

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+ ++I +        +        +              +L  E    +       LE
Sbjct: 571 EQRSRIFEAFSQADTSITRKYGGTGLGLTISSRFVELMGSKLDLESEPGNGTSFFFTLE 629


>gi|308176280|ref|YP_003915686.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
 gi|307743743|emb|CBT74715.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
          Length = 503

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 59/238 (24%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNL-SSMDLVALL---CSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRL 55
           M  N+   L S     A +    +   H++ +P+ AI    ELL        +  + +  
Sbjct: 252 MISNVSTALTSREKSQAQMRQFVADASHELRTPLSAIRGYTELLSATEHFSPDGQRSVDR 311

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +      +          +          + E    + +  +++ +          
Sbjct: 312 VLQQSARMSSLVESLLLLARLDEENAFKRSEVDLCELTADITEDFKLTASDHHWIFDCRT 371

Query: 116 AK------------ILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFP 161
            +            ++ NL   A      G  VT+SV         I  +   G      
Sbjct: 372 PQTIIHADSASLRRVITNLLANARKHTTAGNTVTVSVDQDDQTDEAILRVHDTGEGIAPE 431

Query: 162 E---KFTQIVDGNVES-TIDSH-DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F +    +      D    +       +   +  ++          V    L 
Sbjct: 432 FLPRVFERFTRADKARSGSDGTTGLGLPIAKSIVEAHGGKITVASKPGD-TVFEVRLP 488


>gi|260902546|ref|ZP_05910941.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus AQ4037]
 gi|308109672|gb|EFO47212.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus AQ4037]
          Length = 430

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 66/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHA 128
               +     +  +       E    V+    ++              + + NL + A  
Sbjct: 280 VNKESFESVDVTTIASDVASSEGGYEVEIETDLNMHLPPAKGSPIAIKRAVSNLVVNALR 339

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 K++  V   K      ++ NG      +    F     G+     +   +    
Sbjct: 340 YGNGWVKISTGVTADKQLVWICVEDNGPGIEQSQIAKLFEPFTRGDTARGSEGTGLGLAI 399

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++     +  ++      
Sbjct: 400 VKRIVIQHSGSVVMRNRSEGGLIAQISFP 428


>gi|238755887|ref|ZP_04617216.1| hypothetical protein yruck0001_20720 [Yersinia ruckeri ATCC 29473]
 gi|238705908|gb|EEP98296.1| hypothetical protein yruck0001_20720 [Yersinia ruckeri ATCC 29473]
          Length = 897

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 18/227 (7%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLIRLS 56
             +     L   L + + HD+ +P+  +    E+L               +++ Q +  +
Sbjct: 656 KLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHGAQANQIRQQVLST 715

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEKIDLSR 113
           +      L   R+  G          L +I      + +       +++    E + ++ 
Sbjct: 716 TRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSALHMLETTLSSHTIELDLPSEMVLINC 775

Query: 114 ER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
           +     ++ +NL   AH    +   + I  +         +  NG      +    F + 
Sbjct: 776 DGSLLERVFINLLENAHKYAGQAATLGIRAKALGEWLDVEVWDNGPGITSGQEQLIFDKF 835

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             GN ES I    +       +   +  R+  E   +   V   +L 
Sbjct: 836 SRGNKESAIPGVGLGLAICRAIIDVHGGRIWAEKGQNGGAVFHFVLP 882


>gi|229513299|ref|ZP_04402764.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae TMA
           21]
 gi|229349709|gb|EEO14664.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae TMA
           21]
          Length = 497

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIR 54
           A     N+ +          L + + HD+ +P+GAI  S   L +  +    +   +L+ 
Sbjct: 253 AHRTLANVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLT 312

Query: 55  LSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             +       + +                    V+    +G +   +   +   K    S
Sbjct: 313 SIAEQGERLNRSLTKLLDITRYTATALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIES 372

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S    ++L+NL   A    PRG ++ I+    + +   ++  NG      E 
Sbjct: 373 QPMLVELDSLLIEQVLINLVENAAKYTPRGSEIEIACAYQEQQFTLAVMDNGAGI-PDEA 431

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D          D   +      ++   ++  +     +      +  + 
Sbjct: 432 LPRIFDRFYRVEGHHADGTGLGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|225872344|ref|YP_002753799.1| sensory box histidine kinase, putative [Acidobacterium capsulatum
           ATCC 51196]
 gi|225793977|gb|ACO34067.1| sensory box histidine kinase, putative [Acidobacterium capsulatum
           ATCC 51196]
          Length = 647

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 17/227 (7%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55
           + +   L  S  + ++  L + + H++ +PI AI   LELL           + + +I+ 
Sbjct: 398 QELESELELSRRMASIGRLTAGVGHEVKNPINAIVVHLELLRNKVELKEPAQKHLDIIQS 457

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGE 107
                   ++ +               L  I Q +    +V+        K     +   
Sbjct: 458 EIRRLDRVVQTLVDFSRPVDLHMREYDLRQIVQQVLTLASVELEGRGVTLKSSLPEFPVT 517

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
               +    + LLN+ +    ++P GG + + + +     I  ++  G     PE   +I
Sbjct: 518 VKVDADLTTQALLNVVINGAQAMPDGGLLDVRLAEDGRWAIIRVRDEGTGI-PPEVLPRI 576

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D    +  D   I       +      R+  E         S  L 
Sbjct: 577 FDLYYTTKKDGSGIGLAMTYRILQFQNGRVDVESSSG-GTEFSLCLP 622


>gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra
           magnipapillata]
          Length = 566

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 65/244 (26%), Gaps = 33/244 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           A++I   L      A           + + H+I +P+  +    ELL +  ++ E  + +
Sbjct: 38  ARHISEELQKAKDAAEAANHAKSDFLANMSHEIRTPMNGVIGMTELLLDTTLDAEQQEYL 97

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI----------------EQVIEDFIAVD 97
            +   S+   L+ +     ++      + +  I                 +  +  + V 
Sbjct: 98  NIVKSSSEALLRVINDILDFSKIEAGKMDIESIPFNLERTVADTLKTVVLRAHDKGLEVV 157

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKI 153
             V        +       ++L+N+   A     RG  V    Q+  +        ++  
Sbjct: 158 WDVAPDVPRALVGDPGRLRQVLVNILGNAIKFTERGEVVLRIRQEVASNGKPLLHLAVSD 217

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +  +     +              +       L       +  E       V
Sbjct: 218 TGIGIPANKLGSIFDAFSQEDSSTTRKYGGTGLGLTICARLVEGMGGTIWVESTPGQGSV 277

Query: 209 LSAL 212
               
Sbjct: 278 FHFT 281


>gi|196228677|ref|ZP_03127543.1| histidine kinase [Chthoniobacter flavus Ellin428]
 gi|196226958|gb|EDY21462.1| histidine kinase [Chthoniobacter flavus Ellin428]
          Length = 547

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 76/238 (31%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
           +  N    +      A   +   +CHD  + + AI    ELL       D+  +  E ++
Sbjct: 164 LQTNQRQMVQQERFRAFGEMAGGVCHDFNNALMAIIGYTELLLQNAELIDDRELLREYLK 223

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGS------VDSLIGLGDIEQVIEDFIA-----VDKRV 100
            + ++   A   +  +R  +           VD    + +I  + +           + +
Sbjct: 224 TMNIAGRDASHVVSRLRDFYRPREENDVFTAVDVNDLIEEIVPLTKPKWHGQALESGRTI 283

Query: 101 QVSWTGEKID----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           +V    +K+      S E  + L+NL   A  ++P+GG +T+     ++     +   G 
Sbjct: 284 RVDLELQKLPPVLGNSSELRETLMNLVFNAVDAMPKGGTITLRTVPLEDAIRIEVADTGT 343

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +         D   +       +   ++  +  E +          L 
Sbjct: 344 GMTEEVRQRCLEPFFSTKGDDGTGLGLAMSFGIVRRHEGTMDIETVLGEGTTFVITLP 401


>gi|254428628|ref|ZP_05042335.1| PAS fold family [Alcanivorax sp. DG881]
 gi|196194797|gb|EDX89756.1| PAS fold family [Alcanivorax sp. DG881]
          Length = 368

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 24/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS- 76
           L   + H+I +P+G I  + +LL+    + E+ +  ++    A           G     
Sbjct: 141 LVRGVAHEIKNPLGGIRGAAQLLERALPDPELTEYTKVIIDEADRLRSVADRMLGPRKPP 200

Query: 77  ----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP- 131
               V+    L  + Q++         +   +     D+  +R +++  L  +   +   
Sbjct: 201 EFRAVNVHECLEHVRQLLLAEYPKGVAIWRDYDISLPDVIADRDQLIQVLLNLIRNATQA 260

Query: 132 ----------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
                              + TI  Q  +      +  NG      +    +    V   
Sbjct: 261 LLESKTPAPRITMRTRVLRQFTIGAQRHRLVLRMDIIDNGPGI-AEDVQETLFYPMVSGR 319

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +  +++  +  E       V S LL 
Sbjct: 320 ASGTGLGLSIAQSIISQHQGLIECESQPGE-TVFSILLP 357


>gi|83312823|ref|YP_423087.1| sensory histidine protein kinase [Magnetospirillum magneticum AMB-1]
 gi|82947664|dbj|BAE52528.1| sensory histidine protein kinase [Magnetospirillum magneticum AMB-1]
          Length = 1012

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 59/231 (25%), Gaps = 24/231 (10%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
            ++  + + ++  A + S   HD+  P+ AI   L+LL             E +      +
Sbjct: 782  DLARSNAELEQFAYVAS---HDLREPLRAITGHLQLLQRLAKDKLDDYALESLLFAVDGA 838

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKI 109
                + ++ +        +   +  L   E + +                   +      
Sbjct: 839  RRMDLLIRDLLDYSRIGHADREMEDLDLGEVIADALSNLSAAIAEGHATVTTATGMPHAH 898

Query: 110  DLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQI 167
                E  ++  NL   A           +             S++ NG     PE F +I
Sbjct: 899  GNRMELTRLFQNLIGNALKYRNPERPPEVELRAVRVGGAWDISIRDNGIGI-EPEYFNRI 957

Query: 168  VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +   I       +   +   +  E         +  L 
Sbjct: 958  FMIFQRLHGRGQYEGTGIGLAVCRKIVDRHGGSIRVESEPGKGSTFTVTLP 1008


>gi|330988803|gb|EGH86906.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 530

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 65/228 (28%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHDQ 355

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L           A ++ + V  +   +   
Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFIAEFRSSAAPNQSIHVDISPGTLTTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            R        + +      +  I  ++ +G         
Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGRNHSSAQVWLKLHHDRQSDLPILEVQDDGPGVSEQHL- 474

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++ +    +      +  Y    L   N+  L           L   
Sbjct: 475 AKLFEPFFTTESKGTGLGLYLSRELCESNQAHLEYVPRQGGGSCLRIT 522


>gi|312143399|ref|YP_003994845.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
 gi|311904050|gb|ADQ14491.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           sp. 'sapolanicus']
          Length = 613

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 68/234 (29%), Gaps = 25/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57
                + +M   +   S + H+  +P+ +++  L ++      +    + E+++      
Sbjct: 374 TRLKEIDNMK--SEFVSTVSHEFRTPLTSMNMGLSMVINEDTGELNEEQHELLEAAYEDV 431

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEK 108
                 +  +                 VD    +        +     D  ++   + E 
Sbjct: 432 ERLTELVNDLLDLSKIESGKIEMEFDKVDVNDIIEKTLNPFFKQAEEKDIELKFKQSEEN 491

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ 166
           +    + +KI   +  +   +L    +  I V         + S+  NG      E   +
Sbjct: 492 VFAYADPSKISWVISNLIGNALRYAEQGKIEVDAEIKGRRVLVSVADNGPGI-PKEYQAK 550

Query: 167 IVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I +  V +  D        +       +   +  R+  +  +      S  + +
Sbjct: 551 IFEKFVRTGNDQDEKSGTGLGLAIAKEIITAHNGRIWFDSEEGEGSTFSFYIPR 604


>gi|307352229|ref|YP_003893280.1| multi-sensor hybrid histidine kinase [Methanoplanus petrolearius
           DSM 11571]
 gi|307155462|gb|ADN34842.1| multi-sensor hybrid histidine kinase [Methanoplanus petrolearius
           DSM 11571]
          Length = 1048

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 73/232 (31%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSM 58
           +        ++ + +L   I HD  + + AI  ++ L   +          ++    +  
Sbjct: 666 EEEVLRRQKLESLGVLAGGIAHDFNNILTAISGNIGLARNMAEGDVDVSSRLEEAEKAIS 725

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSR 113
            A    + +         V  +  +  + +   +F++    V++ +              
Sbjct: 726 RAKDITRQLITFSKGGEPVRQVQDIKSMIRESAEFVSHGSNVKLYFDIADDLSNVEVDKG 785

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQD-----------SKNENIFSLKINGNLARFPE 162
           + ++++ NL + +  ++  GG + +  ++                + S++ +G+     E
Sbjct: 786 QISQVIENLVINSIQAMADGGNIYVQARNAGVISGKDGLEDGKYIVISVRDDGSGI-PEE 844

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D    +    + +     + +  ++   +               L 
Sbjct: 845 YREKIFDPYFTTKKSGNGLGLASCMSIIRKHGGAVKLISEVGVGTEFRIYLP 896


>gi|291518851|emb|CBK74072.1| Signal transduction histidine kinase [Butyrivibrio fibrisolvens
           16/4]
          Length = 779

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 60/237 (25%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + +   + + D      +R+ H++ +PI AI    +++     +D ++   R  + +  
Sbjct: 390 EREMYAAVQAQDASTAFMTRMSHEMRTPINAILGMNKMILRESKDDAILDYARDVNSAGN 449

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +             I +   E  + D I                     +     
Sbjct: 450 YLLSIVNEVLDLAKVTAGRIEIIPEEYDLMDMIRECYSLVRPRAKANRLSFEVDMSDVLP 509

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNL----- 157
            + +       +++ NL   A    P G                 I  +   G       
Sbjct: 510 SKLMGDKERVIQVITNLLTNAVKYTPAGRVTLSVQGKISEGRLLLIVGVTDTGIGVAEEN 569

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +     + V       I+   +       L       +  E         + ++ 
Sbjct: 570 IPYLFDSFRRVGEFNNKKIEGTGLGLTITKQLVELMGGSISVESELGKGTTFTVMIP 626


>gi|316934984|ref|YP_004109966.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
 gi|315602698|gb|ADU45233.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris DX-1]
          Length = 607

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 60/238 (25%), Gaps = 28/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+            +   + + H++ +P+ AI    +++ +        +  +  +    
Sbjct: 342 ARAEADRADDAK--SRFLATMSHELRTPLNAIIGFSDMIVQEDELRLGAERRKEYAQLIN 399

Query: 62  I------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                               +  +    +       +           +   +       
Sbjct: 400 DSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALKARDSGIDLVTRAP 459

Query: 110 DLSRE-------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +   +         +ILLNL   A     RGG VT+S        +  +   G      +
Sbjct: 460 ENLPDVVGDPRAFKQILLNLVSNAVKFTERGGTVTVSAAVESTRLVLCVTDTGVGIAEED 519

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ D         +   +   +    V  L   +   +      D    ++  L 
Sbjct: 520 LK-RLGDPFFQAGKTYQRRHEGTGLGLSIVKSLVRMHGGEIDVRSQIDCGTTVTVSLP 576


>gi|269958873|ref|YP_003328662.1| putative histidine kinase sensor protein [Anaplasma centrale str.
           Israel]
 gi|269848704|gb|ACZ49348.1| putative histidine kinase sensor protein [Anaplasma centrale str.
           Israel]
          Length = 827

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 72/251 (28%), Gaps = 38/251 (15%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIR-- 54
            K++   L  S  L A+  L   I HD  + + AI    +LL       +     +++  
Sbjct: 422 RKSLETQLEQSQKLQAIGQLAGGIAHDFNNILTAIIGFCDLLLIQHPVTDPSFRDIMQIK 481

Query: 55  ----LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++      + F R        +D    + D+ Q+I+  I+ D  ++V +      
Sbjct: 482 QNANRATNLIKQLMAFSRKQTLQPKILDINNIVADLSQMIKRLISEDIELRVYYDKNIGL 541

Query: 111 LSRERAKILLNLFM---VAHASLPR---------------------GGKVTISVQDSKNE 146
           +  +  ++   +      A +++                                +    
Sbjct: 542 IKVDLCQLEQVIVNLVVNAKSAMNSGGALTLRTYNLQVDASTIPKGMFVPDKDQVEYGEY 601

Query: 147 NIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD 204
            +  +   G+     +   +I D    +  +     +    V  +  +    +       
Sbjct: 602 VVLEVIDTGHGM-DKQILKKIFDPFFSTKSESYGTGLGLSTVYGIVKQTGGYVYVHSKVG 660

Query: 205 HNVVLSALLEK 215
                  LL +
Sbjct: 661 EGTKFMILLPR 671


>gi|258622613|ref|ZP_05717634.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573]
 gi|258585069|gb|EEW09797.1| sensor histidine kinase LuxQ [Vibrio mimicus VM573]
          Length = 857

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLTDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      +K          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIELVVESNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TSATLVRSDQIRINQILFNLLNNAIKFTHQGSIRVALELIEGDPLAQLVIQVMDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L       H       L
Sbjct: 644 EEDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|253687500|ref|YP_003016690.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251754078|gb|ACT12154.1| histidine kinase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 951

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 451 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDANRLVAAM 510

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I+                    +
Sbjct: 511 NNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRLTLYCFI 570

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A       G +   V        F ++  G   + 
Sbjct: 571 DPKVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIIFEVGCRDGYLEFVVRDTGVGIQP 629

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +  E       +    + 
Sbjct: 630 REAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLFGVRIP 688


>gi|238765204|ref|ZP_04626135.1| Osmolarity sensor protein envZ [Yersinia kristensenii ATCC 33638]
 gi|238696587|gb|EEP89373.1| Osmolarity sensor protein envZ [Yersinia kristensenii ATCC 33638]
          Length = 431

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 198 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 257

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +  V +                
Sbjct: 258 CNAIIEQFIDYLRTGQEMPTEPSDLNAVLGEVIAAESGYERVIETDLCEGEVIVDIHPLS 317

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  +    F   V G+
Sbjct: 318 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEDLKHLFQPFVRGD 375

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A + 
Sbjct: 376 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 418


>gi|227112165|ref|ZP_03825821.1| osmolarity sensor protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 453

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 217 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGKEDDYLAESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    +G++      +         +        S  
Sbjct: 277 CNAIIEQFLDYLRTGQEMQTEVADLNAIMGEVVASESGYERQIDSDFATGELLVRISSLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGN 171
             +  LNL + A        KV+   +       F ++ +G           F   V G+
Sbjct: 337 IKRAALNLVVNAARYGNGWIKVSTGRELQ--RVWFQVEDDGEGIAPDQLQHLFQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T     +    V  +   +   L     +   + + A L 
Sbjct: 395 SARTTSGTGLGLAIVQRIIDAHNGVLDVGRSERGGLCVRAYLP 437


>gi|225869228|ref|YP_002745176.1| histidine kinase protein [Streptococcus equi subsp. zooepidemicus]
 gi|225702504|emb|CAX00431.1| histidine kinase protein [Streptococcus equi subsp. zooepidemicus]
          Length = 348

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK 65
            S    +++ +++ HDI +P+ +I  ++E + +       E   +  I   +      ++
Sbjct: 115 ESEHEKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPREEERHYLNTISRQTNRLNQLVE 174

Query: 66  FMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            + +                      LI +    Q+  +       ++V+    KI    
Sbjct: 175 ELHMVSLNDQKQDDKQQLQIIYLEKLLIDMLSEFQLTLEQEKRSVHIEVAKEVVKISSRY 234

Query: 114 ER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
           +  ++I+LNL   A         +TI     +      +   G   +  +    F ++  
Sbjct: 235 DALSRIMLNLVSNALKYSKANTALTIHAYQQEQSIRIDVIDQGQGIKKEDLPLIFKRLYR 294

Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      H +       LA +    +  E         S LL 
Sbjct: 295 VETSRNMKTGGHGLGLSIARQLARQLGGDIAVESQLGKGSCFSLLLP 341


>gi|172036652|ref|YP_001803153.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171698106|gb|ACB51087.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 476

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 62/216 (28%), Gaps = 18/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL-- 69
            L S + H++ +P+  +   L+  L        ++ E ++     +   +  L+ +    
Sbjct: 259 QLVSNVSHELRTPLTVVSGYLQSTLRRGNNLTDMQREALETASSEADRTVQLLQDLLDLA 318

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                  +    ++     L ++E ++  +    K        +         ++ LNL 
Sbjct: 319 RAEHGGMYFNLETIVLNELLTELEGMVHQYPIPVKLSLPDQLIKVKGDKNRLKQVFLNLI 378

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDS 178
             A         +T+ +  +K +    +   G      +    F +    +      +  
Sbjct: 379 DNAVKYSHSPEPITLKLSHNKQQAKIEVCDRGVGIPLADQTRIFERFYRVDEARSRNVGG 438

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  L       +      +       LL 
Sbjct: 439 TGLGLSIVKTLVEGMGGSINVISQLNQGTTFVILLP 474


>gi|148554082|ref|YP_001261664.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
 gi|148499272|gb|ABQ67526.1| multi-sensor hybrid histidine kinase [Sphingomonas wittichii RW1]
          Length = 829

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 61/219 (27%), Gaps = 23/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLK-------- 65
           S + H++ +P+ ++  SL LL              + ++   +S   I  +         
Sbjct: 357 STVSHELRTPLTSVVGSLTLLRSGAAGQLPAEAQRLAEIAETNSQRLIRLINDILDIDQI 416

Query: 66  ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                                   ++ + +      + +  S        +    ++  N
Sbjct: 417 RKGRMAFEYAVIDLRDVMTKAAHAMQGLADRRSIRIETLMPSTPVMACADADRLVQVAGN 476

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   A    P    V   + + +++++  +  +G           F +   G+  S   I
Sbjct: 477 LLSNAVKFSPEEATVRFELIEGRDDHVIQITDSGPGIPAEFANNIFHRFARGSQPSRQII 536

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +       +   +   +  E   +     +  + +
Sbjct: 537 AGTGLGLAISREIVRSHGGEISFENRAEGGARFAFSIPR 575


>gi|28870744|ref|NP_793363.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968962|ref|ZP_03397102.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
 gi|28853992|gb|AAO57058.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926261|gb|EEB59816.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato T1]
          Length = 646

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           + +       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 257 LTQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRLSQGRFTEIDRYVAA 316

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 317 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSIGL 376

Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151
                +  ++    LNL + A  ++PRGG++TI   +                      +
Sbjct: 377 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCV 436

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 437 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 495

Query: 210 SALLEK 215
              L +
Sbjct: 496 CLYLPR 501


>gi|78223639|ref|YP_385386.1| osmosensitive K+ channel signal transduction histidine kinase
           [Geobacter metallireducens GS-15]
 gi|78194894|gb|ABB32661.1| osmosensitive K+ channel signal transduction histidine kinase
           [Geobacter metallireducens GS-15]
          Length = 888

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 67/217 (30%), Gaps = 20/217 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           ALL S I HD+ +P+ +I  +L+ L E       +  M+L+  +   A    +F+     
Sbjct: 670 ALLNS-ISHDLRTPLVSITGALDTLREKVHTLANEARMELLDTAWEEAERLNRFVGNLLD 728

Query: 73  YTGSV----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKIL 119
            T               +  L        +     ++V V    +   +  +     ++L
Sbjct: 729 MTRLEAGALKVKKELCDVQDLVGCALAALERRIGGRQVDVHLPPDLPLVRMDMVLMTQVL 788

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176
            NL   A    P    + ISV+ +       +  +G      +    F +     +    
Sbjct: 789 ANLLDNALKYSPPESGIEISVRVNDGRLEMEVADHGPGIPEQDLKRVFDKFYRIPIPEGS 848

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +       +   +   +  E      + +   L
Sbjct: 849 RGTGLGLSICKGIVEAHGGAIRAENRARGGLRVIVTL 885


>gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
 gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
           3645]
          Length = 543

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 60/237 (25%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S     +   + + H++ +P+ A+    E+L+    + E  QL+ +     
Sbjct: 158 LAEQAAHAASQTK--SEFLANMSHELRTPLTAVMGLTEVLNTEETDQEKRQLLAMIRQGG 215

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              L                +          +    + D  +V     +++    +    
Sbjct: 216 DHLLNLINDILDLSKIEAGRIENNKIACQPGEIAAEVVDSLRVSAAAKSIELSWTMDDNM 275

Query: 107 EKIDL--SRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFP- 161
                       +IL NL   A      G        D        FS+   G       
Sbjct: 276 PTTIAAAPIRLRQILFNLAGNAVKFTDHGSVTVHLQIDPLDSQLLRFSVTDTGEGIPPEG 335

Query: 162 ----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +DG      D   +       LA      +  E         +  L 
Sbjct: 336 LKLLFEPFSQLDGTAARRRDGAGLGLSISKRLAETMGGTIEVESQPGQGSTFALRLP 392


>gi|125972809|ref|YP_001036719.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
 gi|125713034|gb|ABN51526.1| GAF sensor hybrid histidine kinase [Clostridium thermocellum ATCC
           27405]
          Length = 1160

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 69/243 (28%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEV 49
                  L + +L       +   + + H++ +P+ +I    ++L           + E 
Sbjct: 519 RTTRELRLRTEELEKVNKYRSEFLANMSHELRTPLNSIILLSKMLARKKINEFDEKDMEK 578

Query: 50  MQLIRLSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           +++I  +    +  +             M L      S + +  L  + +       +  
Sbjct: 579 IEVINKAGQELLRLINDVLDLSKVESGKMNLNIFTFHSSELMEDLRQMFESSAKEKNISF 638

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGN 156
            V+ S     +    + ++IL N    A      G         +D +N+ IFS+   G 
Sbjct: 639 FVEDSINSMLVGDRDKISQILRNFLSNAFKFTSEGSVILKAEMDKDRENDLIFSVTDTGI 698

Query: 157 LARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                         + VDG +        +       LA   K  +              
Sbjct: 699 GIPEEHISDIFQEFRQVDGTISRKYGGTGLGLSISKKLADLMKGEIEVRSKIGEGSTFFL 758

Query: 212 LLE 214
            L 
Sbjct: 759 KLP 761


>gi|283457123|ref|YP_003361687.1| signal transduction histidine kinase [Rothia mucilaginosa DY-18]
 gi|283133102|dbj|BAI63867.1| signal transduction histidine kinase [Rothia mucilaginosa DY-18]
          Length = 554

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 61/212 (28%), Gaps = 21/212 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIE----DEVMQLIRLSSMSAIIRLKFMRL-------AF 71
            H++ +P+ AI    ++L             +  I   +      ++ +           
Sbjct: 335 SHELRTPLAAIKGYSDMLRWTEPLSESGQSSLARIDSQTERMSRLVEDLLTLARLDEGRE 394

Query: 72  GYTGSVDSLIGLGDIEQVIEDF--IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                VD    + +    ++                 E +    +  +++LNL   A   
Sbjct: 395 PKLEQVDLTELVLECTSDMQAAARTHEWHLNLPDEPVEVVADRSQIQRVILNLLSNARKH 454

Query: 130 LPRGGKVTI--SVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES-TIDSH-DIQ 182
              G +VT   SV  ++ E + ++  NG           F +    +      D    + 
Sbjct: 455 TDEGTRVTAGLSVDAARREAVVTVADNGPGIAPDFLPKIFDRFTRADKARSGSDGTTGLG 514

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  +   +   +  +    H  V +  L 
Sbjct: 515 LAIVQAIVQAHGGSIQVQSQPGH-TVFTVRLP 545


>gi|259910052|ref|YP_002650408.1| osmolarity sensor protein [Erwinia pyrifoliae Ep1/96]
 gi|224965674|emb|CAX57206.1| Osmolarity sensor protein [Erwinia pyrifoliae Ep1/96]
 gi|310765654|gb|ADP10604.1| osmolarity sensor protein [Erwinia sp. Ejp617]
          Length = 449

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 59/205 (28%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMAEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +   +              + + N+ + A      
Sbjct: 295 QFERADLNSVLGEVVAAESGYEREIENAVLPGELMLDINPLAIKRAIANMVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G           F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGSELQ--RAWFQVEDDGPGIEPDQLKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     D   + + A L 
Sbjct: 413 IDAHYGTLEIGKSDKGGLRIRAYLP 437


>gi|254457763|ref|ZP_05071191.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
 gi|207086555|gb|EDZ63839.1| sensory box sensor histidine kinase/response regulator
           [Campylobacterales bacterium GD 1]
          Length = 766

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 62/233 (26%), Gaps = 23/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           +    L +        S + H++ +P+ AI+    LL     +++  + I     S+   
Sbjct: 388 SRDEALMAEKAKDEFLSNMSHELRTPLNAINGFSSLLKRQIKDEKQSKYIEHILESSSQL 447

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTG----E 107
           +  +      +        L          I                 + +         
Sbjct: 448 IGLINDILDLSKLQSGKFILDYHRFEPYSNIYSLVERFSPNIETASLNLVLDLDDSLKIV 507

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                   ++I+ NL   A    P GG+V +S   + +     +  NG      E   +I
Sbjct: 508 ANGDWLRISQIITNLLSNAIKFTPAGGEVRLSANHNDDNLRIIVSDNGLGI-SKEVQEKI 566

Query: 168 VDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +    V  L  +   ++  E  D +       + 
Sbjct: 567 FMPFEQADSSTTRKFGGTGLGLSIVSNLLKQMDAQIKLESEDGNGSTFELNIP 619


>gi|149923648|ref|ZP_01912044.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
 gi|149815463|gb|EDM75000.1| multi-sensor hybrid histidine kinase [Plesiocystis pacifica SIR-1]
          Length = 361

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 63/225 (28%), Gaps = 16/225 (7%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLI 53
                L      AL  + + I HD  + +  I+   + L        D   +   ++Q  
Sbjct: 1   TESQLLGQQKFAALGRMSAGIAHDFNNLLTTINLGAQELAFPDLSEADREALIAAIVQAC 60

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKID 110
              +                   VD    +     V       + RV+            
Sbjct: 61  ERGAGITRQLQASSAAQLSRPELVDLGELVAKDLGVWRTLAGAEVRVEGVLPDEALPVRV 120

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169
              +  ++LLNL + A  ++   G++T+S       E   S+   G          ++ +
Sbjct: 121 DPAQFHRVLLNLVVNACQAMGESGELTLSAGRRGPGEVFVSVADTGGGIPPS-VAERMFE 179

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +    V  +  +    +    +     + + +L 
Sbjct: 180 PFFTTRETGTGLGLAVVRGVVVQAGGSIDYA-LAGGGTIFTVVLP 223


>gi|307942246|ref|ZP_07657597.1| nitrogen regulation protein NtrB [Roseibium sp. TrichSKD4]
 gi|307774532|gb|EFO33742.1| nitrogen regulation protein NtrB [Roseibium sp. TrichSKD4]
          Length = 383

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 73/242 (30%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51
           MA+ I   L+S         L + + H+I +P+  I  + +LL+      +  +   +  
Sbjct: 126 MAEKIDRQLTSRGAARTVTGLAAMLAHEIKNPLSGIRGAAQLLEQSVEEEDRALTQLITD 185

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                         F          V+  I L  ++++ E+  A   ++   +     D+
Sbjct: 186 ETDRIVKLVDRMEVFSDERPIEREPVNIHIVLDHVKRLAENGFARHLKITEEYDPSLPDM 245

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------------------ENIFSLK 152
              + +++     +   +    G         +                       F ++
Sbjct: 246 YANKDQLIQVFLNLLKNASEAIGDRHDGEIKMRTSFRPGVRLSVPGTDNRVTLPLEFCIE 305

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG      +  + + +  + +  +   +    V  +  ++   +  +     + V   L
Sbjct: 306 DNGPGV-PEDLVSHMFEPFITTKTNGSGLGLALVAKIIGDHGGVIECDSKP-RDTVFRIL 363

Query: 213 LE 214
           + 
Sbjct: 364 MP 365


>gi|326779566|ref|ZP_08238831.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
 gi|326659899|gb|EGE44745.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces cf. griseus XylebKG-1]
          Length = 460

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 72/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRI-----CHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54
           +A+     L  ++  A    R+      H++ +PI  +   LEL+ D+    +E ++L+ 
Sbjct: 227 LAETFNAMLDRLE-RAFAAQRVFVDDAGHELRTPITIVRGHLELMGDDPADREETVRLVT 285

Query: 55  LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    ++ +       R  F     V       D+   +      + ++      E
Sbjct: 286 DELDRMSRIVEDLLLLAGAERPDFVTPEPVQLAELTADVYVKVRTLGDREWQLDGVADLE 345

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                +   + ++ L   A      G ++ I  +  ++     +  +G      +    F
Sbjct: 346 VRLDPQRMTQAMVQLAQNAVQHTVPGQRIRIGSRLEEDRVELYVADHGPGIPPEDAGVIF 405

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G       +    +    V  +A  +  R+     +         LE
Sbjct: 406 ERFRRGTSRRGTRTSGAGLGLAIVKAIAEGHHGRVELRRTEGGGATFVLTLE 457


>gi|220919355|ref|YP_002494659.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
 gi|219957209|gb|ACL67593.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter dehalogenans
            2CP-1]
          Length = 1847

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 61/240 (25%), Gaps = 28/240 (11%)

Query: 3    KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            +++      + L++       + + H++ +P+ ++    ++L    +  +  E ++    
Sbjct: 1438 RSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVKFAST 1497

Query: 56   SSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
               S                       +        +V   +            +    R
Sbjct: 1498 VYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLEAVRDDLEQTFRHVAEHKGLGFQVR 1557

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +                +IL NL   A     RG  V      +     F+++  G    
Sbjct: 1558 MGPDLPERIHTDPTRLLQILKNLISNAFKFTERGEVVLDVGPAAGGALAFAVRDTGIGIA 1617

Query: 160  FP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +  Q  DG          +       +A      +  E       V + +L 
Sbjct: 1618 ADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVESAPGRGSVFTLVLP 1677


>gi|197119334|ref|YP_002139761.1| CHASE/PAS domain-containing sensor histidine kinase response
           regulator [Geobacter bemidjiensis Bem]
 gi|197088694|gb|ACH39965.1| sensor histidine kinase response regulator, CHASE and PAS
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 869

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 73/242 (30%), Gaps = 33/242 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L +  + +L  L   + HD  + + AI  +++L    ++E       ++ I  ++M
Sbjct: 491 EQQMLHAQKMESLGVLAGGVAHDFNNILMAIIGNVDLSLMKIEEASPITANLRNIEKAAM 550

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    K M             +D    +  +  ++E  +  +  + +        +  +
Sbjct: 551 RAADLAKQMLAYSGKGKFVIEKLDLNRLIEKLHPILEPSLPTNAVLTLKLHKPLPMVEGD 610

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQDSK-------------------NENIFSLK 152
                +I++NLFM A  +L   G   I   D                     +  +  + 
Sbjct: 611 ANQMRQIVMNLFMNAVEALGENGGEIIISTDDGVQDGESLQNVLLGETLAEGSYVLLEVT 670

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G      E   ++ D    +      +    V  +   +K  +              L
Sbjct: 671 DTGCGM-EKEVLDKVFDPFFTTKFTGRGLGLAAVHGIVRGHKGGIRISSEPGMGTTFQVL 729

Query: 213 LE 214
           L 
Sbjct: 730 LP 731


>gi|56697871|ref|YP_168242.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
 gi|56679608|gb|AAV96274.1| sensor histidine kinase/response regulator [Ruegeria pomeroyi
           DSS-3]
          Length = 898

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 66/234 (28%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVM---QLIRLS 56
           + +     + +    ++  + + H++ +P+ AI      LL +    D       L   +
Sbjct: 263 LLEARNEAVEASQAKSIFLANMSHELRTPLNAIIGLSGILLRDGQSNDNTRNLTDLRAAA 322

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------SW 104
              +      + L+    G +        ++ +++D +   + + V              
Sbjct: 323 KQLSENIDSILDLSKIEAGELVLEQVWFRLDDLLDDVLMQTRALMVGQPVLLTWDYAPDL 382

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             E         +I++N    A      G    ++           ++  G      +  
Sbjct: 383 PDELCADPLRLRQIMVNFASNAVKFTKEGEIRLLASYHDGA-LRLGVRDTGIGISPEQIE 441

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                    DG+         +       LA + + ++  +         + +L
Sbjct: 442 GIFKAFGQADGSTTRQYGGTGLGLSISQKLADKMQGKIQVDSEPGRGAEFTMVL 495


>gi|50120141|ref|YP_049308.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium atrosepticum SCRI1043]
 gi|49610667|emb|CAG74112.1| two-component system sensor protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 951

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 451 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPKDANRLVVAM 510

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I+                    +
Sbjct: 511 NNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRLTLYCFI 570

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             +             ++L NL   A       G +   V        F ++  G   + 
Sbjct: 571 APNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIIFEVGCRDGYLEFVVRDTGVGIQP 629

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +  E       +    + 
Sbjct: 630 REAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLFGVRIP 688


>gi|327405721|ref|YP_004346559.1| integral membrane sensor hybrid histidine kinase [Fluviicola
           taffensis DSM 16823]
 gi|327321229|gb|AEA45721.1| integral membrane sensor hybrid histidine kinase [Fluviicola
           taffensis DSM 16823]
          Length = 1052

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 69/237 (29%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
            + I     +    +   + I H+  +P+  I+  LELL +   +++V++   + +    
Sbjct: 522 RREIETVKETEKFKSRFLANISHEFRTPLTFINGHLELLKQNASKEDVVRYNEMENNGKR 581

Query: 58  --MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------------Q 101
                   L   ++  G          L +  Q                          Q
Sbjct: 582 LLQLINHLLDLSKMESGQYELQFQNGNLLNEIQAHVQAFHSHALRLGIELTIEISESAKQ 641

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     S     IL+NL   A    P  G +  S+  S+N  + S+   G      
Sbjct: 642 QLNQKPFYYSSEALTTILVNLLSNALKFTPSSGTIYTSIDISENHLLISVADTGIGIPDN 701

Query: 162 E---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +    F +    +   +       I    V  LA  +   +  +   +   V S  L
Sbjct: 702 QLDKVFDRFYQVDSVNQRFQSGSGIGLAIVKELAIMHGGEVSVKNAPESGCVFSISL 758


>gi|290511446|ref|ZP_06550815.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Klebsiella sp. 1_1_55]
 gi|289776439|gb|EFD84438.1| two-component system, NarL family, sensor histidine kinase EvgS
           [Klebsiella sp. 1_1_55]
          Length = 1080

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 61/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55
           + +     + +    +   + + H++ +P+ AI   LELL +  +     +         
Sbjct: 583 LEREKDKAIQATKAKSRFLASMSHELRTPVSAIVGFLELLAKPELNVGQRKEAIELAGST 642

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVS 103
           +     +    + +    +G         D+ Q++                 +     + 
Sbjct: 643 AQTLLGLIGNILDIDKIESGKYQITPQWSDVAQLVSQQCHTFDALAQQKGIVLHHHNALQ 702

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +   +IL NL   A         +     +   +++ E    +  +G    
Sbjct: 703 EGIMLWLDPQALRQILNNLIGNALKFTAEGAIQVSCRLVQADETQGELTLIVSDSGCGIS 762

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    F +              +       L    + RL            +  L 
Sbjct: 763 EAEQATLFHRYAQARQGRQQTGSGLGLVICKELVALMQGRLEMVSHPGVGTTFTITLP 820


>gi|224368970|ref|YP_002603134.1| sensory box histidine kinase [Desulfobacterium autotrophicum HRM2]
 gi|223691687|gb|ACN14970.1| sensory box histidine kinase [Desulfobacterium autotrophicum HRM2]
          Length = 476

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 63/240 (26%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCS------RICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLI 53
           +AK     L    +  L+ +       I HD+ SP+  I    EL L           + 
Sbjct: 233 LAKTFNTMLD--RIAGLVANIREMGDNIAHDLKSPLTRIRGLAELTLVGNKDSGAFESMA 290

Query: 54  RLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDK---R 99
             +       L  +                    VD    + +   + +          +
Sbjct: 291 ASTIEEVDRLLSMINTMLVISRAEAGQGEFRFEPVDLSGLVHEACDLFDAVAEDKDILLK 350

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLA 158
             V              + L NL   A    P GG+V + V D+        +   G   
Sbjct: 351 CTVPAPVVARVDRGMIQRALTNLIDNALKYTPCGGRVWVEVVDAGGGRVEIQVHDTGKGI 410

Query: 159 RFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    F +    +   +     +       +A  +   L  E +     V S  L K
Sbjct: 411 AVSDIERIFDRFFRVDPSRSESGAGLGLCLARAIARGHGGDLCVESVLGKGSVFSLRLPK 470


>gi|153833290|ref|ZP_01985957.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01]
 gi|148870426|gb|EDL69347.1| tmao reductase sytem sensor tors [Vibrio harveyi HY01]
          Length = 985

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPMQKRYAEIINRSGK 516

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +     Y+              D    + D  Q++              ++    
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVG 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                      ++L NL   A      G          + +++ +F +   G      ++
Sbjct: 577 RYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T                   +       +       L  +  + H       + 
Sbjct: 637 KTLFDAFTQAEGGMNQTGGTGLGLAISRRIIQAMGGCLDVDSEEGHGSRFWFSIP 691


>gi|153003492|ref|YP_001377817.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027065|gb|ABS24833.1| integral membrane sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 518

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 67/234 (28%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN------------------SLELL 40
           + +       +  L A+  + ++I H+I +P+ AI                    +L+L+
Sbjct: 271 LDRQQDELRRAERLAAVGRISAQITHEIRNPLNAIGLNAELLAEELAELDVPPREALQLV 330

Query: 41  DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             +  E + +  +    +      K                 L  +   +       +R 
Sbjct: 331 SAISREVDRLNGVAEEYLRFARLPKPALARQDLNEI--LSGLLDFLGPELAAARIELERA 388

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             +          +   + LNL   +  ++P GG VT+  +   +     +   G     
Sbjct: 389 LAAGLPAVQADEGQLRAVFLNLLRNSREAMPSGGTVTVRTRRVGDAIEAEVSDTGGGIPP 448

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I +    +      +   +   +  E+   +  +            L 
Sbjct: 449 GDLT-RIFEAFYSTKERGTGLGLAFTRQVVVEHGGSIRCDSTVGQGTTFVVRLP 501


>gi|221134530|ref|ZP_03560835.1| sensory transduction histidine kinase [Glaciecola sp. HTCC2999]
          Length = 613

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 68/230 (29%), Gaps = 21/230 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +N+     +        + + H+I +P+ AI  +L++L+   ++   + L+ ++  S+ 
Sbjct: 238 QENMIIAQDASASRTRFLANMSHEIRTPMNAIMGALQILESYDLDTGSLNLVNMAIDSSD 297

Query: 62  IR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                             +    + G          +      ++  I ++  +   +  
Sbjct: 298 HLLKIINDILDLSKIDAHQMAIESIGINLQQLLTSAIDKFMLSLDKDIEINLTIPPEFNP 357

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            ++       +I+ NL   A     +G  V I +  +      S+K  G      +    
Sbjct: 358 YRVGDPVRFNQIINNLISNAIKFTEKGS-VDICLLGNDESIELSVKDTGIGIPKHQLQNI 416

Query: 167 IVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                    ++  +     +       L      +L     +      + 
Sbjct: 417 FSPFKQADDSITRSYGGTGLGLAICTSLTELMSGKLKVTSEEGVGTEFTF 466


>gi|33862538|ref|NP_894098.1| two component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9313]
 gi|33640651|emb|CAE20440.1| two component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9313]
          Length = 499

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 58/218 (26%), Gaps = 20/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLA-- 70
             + + H++ +PI  I      +L         +   + +I   +      +  +     
Sbjct: 278 FANALSHELRTPITLIIGYTSRVLRRSGNLSEDQRHQLTIIDDETRRLGRLITDLLDIAR 337

Query: 71  ----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                       ++        L   +   E  + +            +       + L 
Sbjct: 338 EESGALVITSEPFSAFETLEQVLLLNQGDHETRLKIQSSSHGFDQIWALGDHDRVVQCLS 397

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177
           NL   A    P   +V +S   +       ++ +G      +    F Q   G+  +   
Sbjct: 398 NLIENAFKYSPEEKRVELSCVSTHEHVRLQVRDHGPGVPEADQELIFQQFQRGSNTAQQP 457

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L      R+  E   D   +    L++
Sbjct: 458 GSGVGLALVYSLVKRMGGRVWVENAADGGAIFVIELQR 495


>gi|32477912|ref|NP_870906.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32448469|emb|CAD77984.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1122

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 59/232 (25%), Gaps = 27/232 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+ +    S         + + H+I +P+ AI    +L+ ++  + + ++ +     +  
Sbjct: 713 ARAVAEAASQSKSA--FVANMSHEIRTPMTAILGYADLVRDMIEDPQAIEHLETIRRNGD 770

Query: 62  IRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WT 105
             L+               + +          +  +  I +V      +   VQ      
Sbjct: 771 YLLEIINDILDLSKIEAGKLEVNHEKFEPARLIEDVRSIMEVRAKEGGLSLDVQYIGLLP 830

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  +   +IL+NL   A                        +   G      E+  
Sbjct: 831 KTIESDGKRLKQILINLVGNAIKFTQ--KGWVQIRVRFNKLLHIDIVDTGIGM-SDEQQK 887

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           ++          V  T     +       L       ++    +      + 
Sbjct: 888 RLFKPFSQGDASVTRTFGGTGLGLAISKRLTEMLGGTIIASSTEGVGSTFTV 939


>gi|15800126|ref|NP_286138.1| phosphate regulon sensor protein [Escherichia coli O157:H7 EDL933]
 gi|15829704|ref|NP_308477.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168749853|ref|ZP_02774875.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4113]
 gi|168756933|ref|ZP_02781940.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4401]
 gi|168761597|ref|ZP_02786604.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4501]
 gi|168768342|ref|ZP_02793349.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4486]
 gi|168776303|ref|ZP_02801310.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4196]
 gi|168783257|ref|ZP_02808264.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4076]
 gi|168786238|ref|ZP_02811245.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC869]
 gi|168800274|ref|ZP_02825281.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC508]
 gi|195938539|ref|ZP_03083921.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807468|ref|ZP_03249805.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4206]
 gi|208815881|ref|ZP_03257060.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4045]
 gi|208823245|ref|ZP_03263563.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4042]
 gi|209398260|ref|YP_002269038.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4115]
 gi|217325530|ref|ZP_03441614.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. TW14588]
 gi|254791578|ref|YP_003076415.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223876|ref|ZP_05938157.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. FRIK2000]
 gi|261256410|ref|ZP_05948943.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. FRIK966]
 gi|12513246|gb|AAG54746.1|AE005219_2 positive and negative sensor protein for pho regulon [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359907|dbj|BAB33873.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli O157:H7 str. Sakai]
 gi|187768310|gb|EDU32154.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4196]
 gi|188015838|gb|EDU53960.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4113]
 gi|188999394|gb|EDU68380.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4076]
 gi|189356011|gb|EDU74430.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4401]
 gi|189362390|gb|EDU80809.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4486]
 gi|189368101|gb|EDU86517.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4501]
 gi|189373469|gb|EDU91885.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC869]
 gi|189377386|gb|EDU95802.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC508]
 gi|208727269|gb|EDZ76870.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4206]
 gi|208732529|gb|EDZ81217.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4045]
 gi|208737438|gb|EDZ85122.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4042]
 gi|209159660|gb|ACI37093.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. EC4115]
 gi|209744226|gb|ACI70420.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744228|gb|ACI70421.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744232|gb|ACI70423.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|217321751|gb|EEC30175.1| phosphate regulon sensor protein PhoR [Escherichia coli O157:H7
           str. TW14588]
 gi|254590978|gb|ACT70339.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O157:H7 str. TW14359]
 gi|320192811|gb|EFW67451.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           EC1212]
 gi|320638388|gb|EFX08102.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           G5101]
 gi|326341158|gb|EGD64950.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           1044]
 gi|326346066|gb|EGD69805.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           1125]
          Length = 431

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 71/215 (33%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +   ++ NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSVISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|154245689|ref|YP_001416647.1| multi-sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
 gi|154159774|gb|ABS66990.1| multi-sensor signal transduction histidine kinase [Xanthobacter
           autotrophicus Py2]
          Length = 501

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 30/241 (12%)

Query: 2   AKNICFNLSSM--------DLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIED 47
            +     L  +         L A+  + S + H++  P+ AI N +     LLD   ++ 
Sbjct: 251 RQETEARLQELQAELVHISRLTAMGEMASTLAHELNQPLSAIANYIKGSRRLLDAGTVKV 310

Query: 48  EVM--------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDK 98
           E++        +    +         F+               + +   +          
Sbjct: 311 EMLQGALEKAGEQALRAGQIIRRLRDFVSRGESERRVESLSKLVEEASALALVGAKEHGI 370

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSLK 152
           +V+  +      +  ++ ++   L  +   +L    +               +  + S+ 
Sbjct: 371 QVRFHYDPRCDLVLADKVQVQQVLLNLMRNALEAMMEAPRRQLLVKTEAAEDDMVMISVS 430

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G      E   Q+    V +      +       +   +  R+  E   +   V    
Sbjct: 431 DTGLGI-STEVAPQLFTPFVTTKKHGMGVGLSISRTIIEGHGGRIWAEPNPEGGAVFRFT 489

Query: 213 L 213
           L
Sbjct: 490 L 490


>gi|163938349|ref|YP_001643233.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|163860546|gb|ABY41605.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
          Length = 408

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 20/226 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +     +     +  + + I H+I +P+ A+    ++  E   ED +     +     
Sbjct: 189 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNPEDTM--SYEIMLQEI 241

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------EQVIEDFIAVDKRVQVSWT-GEKI 109
                F+           +     +I           +       V   +QV        
Sbjct: 242 ERINGFVSELMLLGKPKPTNYEWCNIGEILLYVVQLMESYATQYKVKFNLQVDGNLPVIN 301

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              ++  ++LLN+      S+P GG + I + + +      S++  G      EK  +I 
Sbjct: 302 GDDKQLKQVLLNIIKNGIESMPGGGNIRILAYEKAGENLCISVEDQGLGI-ENEKIEKIG 360

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +   +       +  E++  +  E        +   L 
Sbjct: 361 KAFYTTKENGTGLGLMITYKIIEEHQGSIAIESSMGIGTKVEIYLP 406


>gi|255532721|ref|YP_003093093.1| ATPase [Pedobacter heparinus DSM 2366]
 gi|255345705|gb|ACU05031.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
            2366]
          Length = 1340

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/212 (10%), Positives = 52/212 (24%), Gaps = 18/212 (8%)

Query: 21   RICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             + H++ +P+  I   LE L +        + + L+ +++      +  +          
Sbjct: 824  NVSHELRTPLTLILAPLEELIKIPLADKVSKKLNLMSVNAKRLYSLVDQLFEFRKTEMGT 883

Query: 78   DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------------RERAKILLNLFMV 125
              L             I    +                             KIL NL   
Sbjct: 884  RPLKVAKGDIVSFIFEIYESFKPLSEKNNIHYTYHSTEAKLSFYFDKDAMEKILFNLLSN 943

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQ 182
            A        KV+I +    +  +  +   G      +    F +    +         + 
Sbjct: 944  AFKYTSPHHKVSIELLKKDDVVLIKIADTGIGINEEDLTKVFDRFYQVDNREMNLGSGVG 1003

Query: 183  FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   L   +  ++  E         +  + 
Sbjct: 1004 LAFTKRLVELHHGQIRVESEPGRGSTFTINIP 1035


>gi|253682744|ref|ZP_04863540.1| sensor histidine kinase [Clostridium botulinum D str. 1873]
 gi|253561066|gb|EES90519.1| sensor histidine kinase [Clostridium botulinum D str. 1873]
          Length = 738

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 70/228 (30%), Gaps = 23/228 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---- 62
           + +  L A+  + + I HDI + +  I  S++LL +   ED ++Q               
Sbjct: 368 IENEKLRAMGEMAAGIAHDINNILTPIIGSVQLLKDKYFEDNIIQKQLKVIEMCAYDATN 427

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGE 107
                 ++             +    + D   + ++            ++    ++   +
Sbjct: 428 IINKLKKITKSSNNNNEVDIFNVNEIIIDAISLTKNKWFTESILNGIKINISTNLNSKEK 487

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                 E  ++++N+   A  ++   G + I  +D  N  I  +K NG      E   +I
Sbjct: 488 IQGNITEIREVIINIISNAVDAIKEVGSIDIFTKDEDNFVIIEIKDNGVGIN-DEIGDRI 546

Query: 168 VDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +       +       +       +  +   D        L 
Sbjct: 547 FEPFFTTKGKKGSGLGLSIAYEIIQSIGGVINCKSAKDIGTKFEIKLP 594


>gi|239908009|ref|YP_002954750.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239797875|dbj|BAH76864.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 704

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 66/243 (27%), Gaps = 31/243 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
            KN+   L  S  + A+  L   I HD  + +G I    E+++     D  +        
Sbjct: 318 RKNLERRLLQSQKMEAIGTLAGGIAHDFNNILGIIMGFAEMIEGEAAPDTPLSRRVGHIL 377

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              R +    +  L F R        +     + +  ++I   + +   ++      +  
Sbjct: 378 SASRRARDLVLQILSFSRQTDEQANRLHVGPLVKETLKLIRATVPIAVEIREVIRPGRDA 437

Query: 111 LSRERAKILLNLFMVAHASLPRGG-----------------KVTISVQDSKNENIFSLKI 153
           +  E ++I   +  +   +                          +           ++ 
Sbjct: 438 VLAEPSQIQQIIMNLCGNAAHAMRETGGLLEVGLEELPAAACPLPAESGPSQCLHLWVRD 497

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      +   ++ D    +    +   +       +  + K  +  + +     +   
Sbjct: 498 TGPGI-AADIIERVFDPFFTTKKPGEGTGMGLSVAHGVVRKYKGEIKVKNVAGGGALFDV 556

Query: 212 LLE 214
            L 
Sbjct: 557 YLP 559


>gi|197118335|ref|YP_002138762.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
 gi|197087695|gb|ACH38966.1| response receiver histidine kinase response regulator [Geobacter
           bemidjiensis Bem]
          Length = 692

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 65/233 (27%), Gaps = 29/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------LIRLSSMSAI 61
             ++ V LL   + HD  + +  I    E+L         ++            +S    
Sbjct: 309 QKLEAVGLLAGGVAHDFNNILTVIGGYCEMLKLDLAPGHPLRDKVLQISAASERASNLTR 368

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKI 118
             L F R         D  + L  +E+ ++  I  D  +        I    +     ++
Sbjct: 369 SLLAFSRKGEVKAVPTDLNLLLRGVEKFLQRIIGEDITLSTKVPERAIWAVVDSGQIDQV 428

Query: 119 LLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L+NL   A  ++P+G                          +  + ++   G      E 
Sbjct: 429 LMNLAANARDAMPKGGSLFVELERQEIDAGFVQAHGFGTPGSYALLTVSDTGQGM-DEET 487

Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    + +      +    V  +  ++K  +               L 
Sbjct: 488 RNRIFDPFFTTKVSGKGTGLGLAIVYGIVIQHKGFVNVYSEPGVGSTFRIYLP 540


>gi|116619301|ref|YP_821457.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222463|gb|ABJ81172.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 783

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 63/240 (26%), Gaps = 27/240 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVM 50
            + +   L  +  + A+  L   + HD  + +  I      L +    D        +++
Sbjct: 401 RRELEEELRQAQKMDAVGRLAGGVAHDFNNLLTVIVGYSRTLLDRSPSDDSTRFQLEQIL 460

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q    ++      L F R        ++    + ++E ++   +              + 
Sbjct: 461 QASNRAAALTSQLLAFSRKQVPQPRLINLNHLVMNVESLLRRVMGEHIVFHAVLADCLLY 520

Query: 111 LSRERAKILLNLFM---VAHASLPR------------GGKVTISVQDSKNENIFSLKING 155
           +  +  ++   L      A  ++P               +     +  +   +  ++ +G
Sbjct: 521 VKADPNQLEQILINLAANARDAMPDGGEFRIETALVDAREEAAEDRAEEKCVLLRVRDSG 580

Query: 156 NLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +     +    V  L  +N   +       H  V    L 
Sbjct: 581 IGMNEAVLEHAFEPFFTTKGVGKGTGLGLSTVYGLVQQNHGTIHVSSERGHGTVFEIYLP 640


>gi|110598538|ref|ZP_01386807.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
 gi|110339842|gb|EAT58348.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [Chlorobium ferrooxidans
           DSM 13031]
          Length = 596

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 66/220 (30%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF------ 66
             S + H++ +P+ +I    E L E  + +       +++I   S      +        
Sbjct: 367 FVSSVSHELRTPLTSIKGYTETLLEGAMHEPEHASAFLKIILQESEQLTALVNDVLDLSR 426

Query: 67  --MRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                   +  +VD    +     Q+         R+ VS   +   L  +   + + + 
Sbjct: 427 IESGRIEYHFSAVDLRTVIAKSVDQLRLALEKKAVRLDVSIADDMPQLHADSGYLEIVVR 486

Query: 124 MVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VES 174
            +   ++       GK+ IS   + +     ++ NG      +    F +    +     
Sbjct: 487 NLLDNAIKYVDAEHGKIRISAFRNGDFVQLDVEDNGIGISKQDLGRIFERFYRVDKARSR 546

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    V  +   +K  +          V S L  
Sbjct: 547 ELGGTGLGLAIVKHIVLAHKGHVEVRSRVSQGSVFSVLFP 586


>gi|88858301|ref|ZP_01132943.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
 gi|88819918|gb|EAR29731.1| hypothetical protein PTD2_12964 [Pseudoalteromonas tunicata D2]
          Length = 884

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 57/235 (24%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K +     +  L +   + + H+I +P+ AI    E +     +D+  Q +     ++
Sbjct: 395 LEKAMNQAEQASQLKSRFLANMSHEIRTPLTAIMGFTEQMLTKEPDDKKAQHLNTVLRNS 454

Query: 61  IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--W 104
                             + + +          +  +  +  V+     +   V+     
Sbjct: 455 KHLLELINNILDLSKIEAEKLEVERQPLELSQLIEDINSVVHVLAQDKNLTFAVEYDYPL 514

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEK 163
                       ++LLN+   A      G            ++  F ++  G      E 
Sbjct: 515 PRTLNSDITRLKQVLLNVCTNAVKFTAEGSVTLAISAKHSLSQLEFKVQDTGIGMSNQEL 574

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +I                   +       LA      +               
Sbjct: 575 -ERIFKPFEQADSSTTRKFGGTGLGLCISKNLAQLLGGDITVTSKQTQGSCFLIT 628


>gi|119776643|ref|YP_929383.1| osmolarity sensor protein [Shewanella amazonensis SB2B]
 gi|119769143|gb|ABM01714.1| osmolarity sensor protein EnvZ [Shewanella amazonensis SB2B]
          Length = 438

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 64/218 (29%), Gaps = 8/218 (3%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA ++          AL+ + I HD+ +P+  I  + E++ +         +I       
Sbjct: 223 MAHSMRMLEQD---RALMMAGISHDLRTPLTRIRLASEMMVDEDA-YLRDGIIADIDDMN 278

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            I  +F+        +V     +  +        +    V     G  I +  +   I  
Sbjct: 279 AIINQFIAYIRQDQEAVWEKADINQLVSEYAQAESKRDGVIELALGPCIGIPVQVIAIKR 338

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK---FTQIVDGNVESTI 176
            L  +   +   G          +    + +++ NG      +    F     G++    
Sbjct: 339 VLGNLVENAFRYGRGWIRISTRMEKSSLVLTVEDNGPGIPVDQIPKLFQPFTQGDMARGS 398

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    +  +   ++ ++      +  +     L 
Sbjct: 399 LGSGLGLAIIKRIVDRHQGKVKLSNRVEGGLKAEVFLP 436


>gi|332768210|gb|EGJ98395.1| his Kinase A domain protein [Shigella flexneri 2930-71]
          Length = 610

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 365 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 423

Query: 54  RLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 424 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMPEPGLSSPINLSLPEP 483

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 484 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 543

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 544 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 596


>gi|332187205|ref|ZP_08388945.1| sensory box protein [Sphingomonas sp. S17]
 gi|332012905|gb|EGI54970.1| sensory box protein [Sphingomonas sp. S17]
          Length = 1110

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
           +A+       +  + A+  L   I HD  + +  I  SLE+++          L R  + 
Sbjct: 721 LAEAEEQLRQAQKMEAVGQLTGGIAHDFNNLLAGIIGSLEIIERRLSTGRTDGLDRFING 780

Query: 58  ---------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                          L F R         D    +  +E +I   +    +V+V   G  
Sbjct: 781 AQTSAQRAAALTQRLLAFSRRQTLDPKPTDVNRLVFGMEDLIRRTVGPAIKVEVVGAGGL 840

Query: 109 IDLSRERAKILLNLFM---VAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                + A++   L      A  ++P                                 +
Sbjct: 841 WPAKVDAAQLESALLNLAINARDAMPMGGRLTIETANKWLDDRGARERQLPPGQYLSICV 900

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
             +G      +   +I D    +        +    +     ++  ++     + H   +
Sbjct: 901 TDSGTGI-PKDIVDRIFDPFFTTKPIGQGTGLGLSMIHGFVRQSGGQVRVYSEEGHGTTM 959

Query: 210 SALLEK 215
              L +
Sbjct: 960 CLYLPR 965


>gi|320160495|ref|YP_004173719.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319994348|dbj|BAJ63119.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1095

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 59/218 (27%), Gaps = 21/218 (9%)

Query: 18   LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM------ 67
              + + HD+ SP+  +     +L         +   +Q I     +    +  +      
Sbjct: 867  FVATVSHDLRSPLTLMKGYTTMLQMVGELNEQQKAYVQKIISGVENMSRLVNNLLDLGRI 926

Query: 68   ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                  ++       V   +      Q  +  I ++K  Q +             + L N
Sbjct: 927  EAGIGLQIEKVMVSQVVDEVLNALQLQATQKQIELEKEWQSTAPVIVEGDRALLQQALYN 986

Query: 122  LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID---- 177
            L   A    P GGKV+I +++     +  +   G      +              +    
Sbjct: 987  LVENAIKYTPSGGKVSIRLEERSESLVLKVVDTGIGIAPLDLPRLFEKFYRSGRRESYQQ 1046

Query: 178  -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +  R+  E         S  L 
Sbjct: 1047 RGSGLGLAIVKSIVERHHGRVWVESQLGKGSTFSVELP 1084


>gi|299147684|ref|ZP_07040747.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
 gi|298513867|gb|EFI37753.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_23]
          Length = 482

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL + 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLQLLEDKRVGALNDEQEQLSKS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQFMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +  +N     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGAKQDENRIELYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHKSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|295400319|ref|ZP_06810298.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
 gi|294977594|gb|EFG53193.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus thermoglucosidasius C56-YS93]
          Length = 431

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 77/223 (34%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-----S 57
           +        M+ V+ L + I H+I +P+ A    ++LL++  +  E  +           
Sbjct: 191 RKRIIRAEKMEAVSHLAASISHEIRNPLTAARGFMQLLEQHHLSPEKRKQYVRIAIEELD 250

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----WTGEKIDLS 112
            +  I   ++  A     S++ L    +IE+VI+    +     V           I   
Sbjct: 251 RAEAIITDYLTFAKPAPESIEKLNVKTEIERVIDLLRPLANMNSVEVKTTLAPFTIIGER 310

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  + LLN+   A  ++P GG + I V   K   +  +   G      E+  ++ +   
Sbjct: 311 EKFRQCLLNIMKNAIEAMPNGGVLQIYVSIEKQHVLIRITDTGIGM-TKEQIERLGEPYF 369

Query: 173 EST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  I    +    V  +       +  +        +S  L 
Sbjct: 370 TTKGIKGTGLGMMVVYRIIESMNGTIHIKSEIHKGTEVSIYLP 412


>gi|302874875|ref|YP_003843508.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|307690508|ref|ZP_07632954.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
 gi|302577732|gb|ADL51744.1| PAS/PAC sensor signal transduction histidine kinase [Clostridium
           cellulovorans 743B]
          Length = 894

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 64/238 (26%), Gaps = 32/238 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDEVMQLI 53
                +        + S I H++ +P+  I ++ +L++                + + +I
Sbjct: 629 EETLRMQEE-----IFSNISHELKTPLNVIFSTNQLMELYFKNNCIEGNKEKVSKSINII 683

Query: 54  RLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           + +       +  +               +      I    ++ + E        +    
Sbjct: 684 KQNCYRFTKLINNIVDVSKIDSGFFELNLSNENIVNITEDIVQSISEYIEGKGLSIIFDT 743

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             E+  ++ +  KI   +      A       G++ ++V D        ++  G      
Sbjct: 744 NVEEKTIACDPDKIERIILNLVSNAIKFSNPEGQILVNVFDKGEFVEIIVEDTGIGIESK 803

Query: 162 E---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F +    +       +   I    V  +   +   +  +   +       +L 
Sbjct: 804 HLNNIFERFHQVDKSLSRNAEGSGIGLSLVKSIVEMHGGSISVKSQVNKGSTFKVVLP 861


>gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 581

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 62/257 (24%), Gaps = 44/257 (17%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L +    A   SR        I H++ +P+  I    +LL + G ++E  + +
Sbjct: 171 QKRLAEELLASKRAAEAASRAKTQFLANISHELRTPLNGILGIAQLLLDKGGDEETREYL 230

Query: 54  RLSSMSAIIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
            +   SA                      +        +  + +    + Q +       
Sbjct: 231 GVIRQSAATLTNIVGELLDLSNVEAGRLRLAPREFELAAELTPLLRNFMAQSLPRSFEFS 290

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN------------ 145
                      I  +    +IL+NL   A     RG          +             
Sbjct: 291 YFFDPGLPERIIGDANRIKQILINLVGNAFKYTRRGHVTVRVAPGGEAAGPGAEGFAAPE 350

Query: 146 ---ENIFSLKINGNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRL 197
                   ++  G            +   I +  +        +       LA      +
Sbjct: 351 GRARLRLVVEDTGIGIEPGRERSIFEPFGIGEDYLTKKYSGAGLGLAIARRLARMMGGDV 410

Query: 198 LPEIIDDHNVVLSALLE 214
                       +A LE
Sbjct: 411 TFVSEPGRGSTFTATLE 427


>gi|171059363|ref|YP_001791712.1| histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776808|gb|ACB34947.1| histidine kinase [Leptothrix cholodnii SP-6]
          Length = 635

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 59/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIE--DEVMQL 52
           +       + +  L  L  L + I H++  P+GAI        E +    ++     + +
Sbjct: 391 LRAAQDELVQAAKLAVLGQLATGITHELAQPLGAIRTLAGNAREFMRRADLDGAQSNLVI 450

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSW 104
           +          +  ++     +  +     +          +                  
Sbjct: 451 VDGLVDRMGEIIHPLKAFARKSPVLPEASDVSAALGSALFLLDQRIRAEGVSVVNHCAGD 510

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARFP 161
           +           ++L+NL   A  ++       + +             +  +G     P
Sbjct: 511 SVTAWCNRNRLEQVLINLIGNAIDAMREAPTKQLRISVRRGSDERVCIDVADSGEGL-AP 569

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYV--ILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    +      +      +    V    +A +    L  E   +     +  L 
Sbjct: 570 EVLDGLFTPFFTTKAAGSGLGLGLVISRGIAQDYGGDLTAENRPEGGARFTLWLP 624


>gi|170751602|ref|YP_001757862.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170658124|gb|ACB27179.1| integral membrane sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 722

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 66/240 (27%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------- 53
           A++       M+ +  L   + HD  + +  I +S ELL    + ++             
Sbjct: 336 AEDALRQSQKMEAIGQLTGGVAHDFNNLLTVIRSSSELLRRPNLPEQRRLRYVEAIATTA 395

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             ++      L F R         D    +  I +++        R+ VS   E   +  
Sbjct: 396 DRAAKLTGQLLAFSRRQSLKPEVFDVGQSVAAITEMVGTLTGARIRITVSVPNEPCFVDA 455

Query: 114 ERAKI---LLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKINGNL 157
           + ++    L+N+ + A  ++                     S           +   G  
Sbjct: 456 DPSQFDTSLVNMAVNARDAMSGEGALTVTVRLSSDIPGTAPSPAPGDGFVAVDVADTGTG 515

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +I +    +        +    V   A ++   +            +  L +
Sbjct: 516 IPPTDL-ERIFEPFFTTKGVGHGTGLGLSQVFGFAKQSGGEVRVVSTPGLGSTFTLYLPR 574


>gi|169836756|ref|ZP_02869944.1| Sensory transduction histidine kinase [candidate division TM7
           single-cell isolate TM7a]
          Length = 317

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/233 (9%), Positives = 64/233 (27%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           M   +  +  +        S   H++ +P+  I    E++      ++ I  E +  I  
Sbjct: 47  MLDRLETSFENQK---KFVSDASHELRTPLAIIKGYAEIIRKRGTTDIDIFVESIDSIIS 103

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            + +    ++ +        +  +   +      +   I  D  V        +++  + 
Sbjct: 104 ETDNMRNLIQKLLFLAKGEITKINTKFVDIDANEMVHQIHSDTVVSTKTHKFHLEMGEDY 163

Query: 116 ---------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     + +  L   A         + I           S++  G      +    
Sbjct: 164 KIKGDETLLQQAIRALIENAAKYSEPNTNIYIKSFIKDGFGRISIRDEGVGISDEDAKRI 223

Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    ++          +    V  +   +  ++  +   +    +S +L 
Sbjct: 224 FDRFYRVDLSRTKATGGTGLGLAIVKRIVEIHNGKIEVDSKMNEGTEISIVLP 276


>gi|162448859|ref|YP_001611226.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161159441|emb|CAN90746.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 711

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            +     L S  L A+  L   + HD  + + AI    EL          +         
Sbjct: 305 RRLEEQLLHSQKLEAIGRLAGGVAHDFNNMLTAIFGHRELAVRKVPAASPVAEHLTQIGT 364

Query: 54  --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R        VD    +  +E ++   +  D  + V    +   +
Sbjct: 365 AAERAAALTRQLLAFARKQLIQPTVVDPNALILGVEPLLRPLVGEDVELVVLPGSQIWPI 424

Query: 112 SRE---RAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKI 153
             +     ++L+NL + A  ++P GG++                    +  +    ++  
Sbjct: 425 HIDRGQFEQLLMNLAVNARDAMPGGGRLVIETANRALGAGDGGWGPEIEPGDYVELTVTD 484

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G           + +    +        +       +  ++   +            + 
Sbjct: 485 TGQGI-DDAVQKYVFEPFFTTKEPGKGSGLGLATCHGIVKQHGGHIGFASAPGQGTRFTI 543

Query: 212 LLEK 215
              +
Sbjct: 544 CFPR 547


>gi|153836217|ref|ZP_01988884.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
 gi|149750492|gb|EDM61237.1| sensory transduction protein kinase [Vibrio parahaemolyticus
           AQ3810]
          Length = 1051

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 65/238 (27%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 382 ERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTATQRDYVDTIETSSQ 441

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +                  + ++   T   +S+  +  I         ++  V +S    
Sbjct: 442 LLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTP 501

Query: 108 KIDLSRERA--KILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFP 161
              +  +    ++++N    A     RG       T+   +S+    FS++ +G      
Sbjct: 502 YHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQ 561

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   +I                   +       L       +  E            L
Sbjct: 562 Q-QKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|28898529|ref|NP_798134.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260879574|ref|ZP_05891929.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|260894951|ref|ZP_05903447.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|260901039|ref|ZP_05909434.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
 gi|28806747|dbj|BAC60018.1| putative histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308086084|gb|EFO35779.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           Peru-466]
 gi|308093366|gb|EFO43061.1| signal transduction histidine kinase [Vibrio parahaemolyticus
           AN-5034]
 gi|308110723|gb|EFO48263.1| response regulator receiver domain protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 1051

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 65/238 (27%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 382 ERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTATQRDYVDTIETSSQ 441

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +                  + ++   T   +S+  +  I         ++  V +S    
Sbjct: 442 LLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTP 501

Query: 108 KIDLSRERA--KILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFP 161
              +  +    ++++N    A     RG       T+   +S+    FS++ +G      
Sbjct: 502 YHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQ 561

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   +I                   +       L       +  E            L
Sbjct: 562 Q-QKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|117925742|ref|YP_866359.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609498|gb|ABK44953.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 969

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 64/236 (27%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+    + +     +   + + H+I +P+ A+    E+L E  ++ E    I     + 
Sbjct: 587 LAREQAESANRAK--SDFLAAMSHEIRTPMNAVIGMGEVLLETKLDQEQRHYIETLQHAG 644

Query: 61  IIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------RVQVSW 104
              L          ++  G    V+    L  +         V             + S 
Sbjct: 645 EALLDLINAILDLSKIESGRMELVEQDFDLHKMVVETCQLFQVQCRKQGIELNLNWEESN 704

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       +IL NL   A          V I   + +   +F +  +G      ++
Sbjct: 705 PTYIHGDQARIRQILFNLIGNAVKFTDEGSVTVEIRSIEQEKTLLFKITDSGIGIPADKQ 764

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T     +              +       L    K R+  +  +      S  L 
Sbjct: 765 ETIFQKFSQADSSLSRRHGGSGLGLTICRHLVEHMKGRIWVDSEEGQGSCFSFTLP 820


>gi|332703162|ref|ZP_08423250.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553311|gb|EGJ50355.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 657

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/245 (8%), Positives = 59/245 (24%), Gaps = 34/245 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK++    +     A L + + H+I +P+  +   +EL        +V Q + L+  S  
Sbjct: 262 AKDLAEEANQAK-SAFLAA-MSHEIRTPMNGVLGMIELALMRRPTSKVKQYLDLAKQSGQ 319

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                             +  +        ++   +         +  +     V  + +
Sbjct: 320 ALLLIINDILDLSKIEAGMITIEEQPFNPRAMLESLFATMSLAAEQKGLEFRSNVASALS 379

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKI 153
              +       ++L N+   A     +                 I         + S++ 
Sbjct: 380 SMALGDEGRLRQVLFNIIGNAIKFTEQGEIAVSIDVPRGEKWRDICGAKGSFCLLASIRD 439

Query: 154 NGNLARFPEKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            G                             +       L      ++  E       + 
Sbjct: 440 TGVGIPAHMLEKIFDSFTQVNGRNYEFGGTGLGLAISRQLVEMMGGKIWVESEPGKGSLF 499

Query: 210 SALLE 214
           + ++ 
Sbjct: 500 TFVVP 504


>gi|332524708|ref|ZP_08400907.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
 gi|332108016|gb|EGJ09240.1| PAS/PAC sensor signal transduction histidine kinase [Rubrivivax
           benzoatilyticus JA2]
          Length = 686

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 69/247 (27%), Gaps = 34/247 (13%)

Query: 1   MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAI----HNSLELLDEVGIE------- 46
           +++     L  S  L  +  + S + H++  P+ AI      SL LL++   E       
Sbjct: 422 LSRQQQDRLQASARLATVGEMASLLSHELNQPLAAIASYSSGSLNLLEDAAREGTPPGPV 481

Query: 47  ----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVD 97
                + ++ I   +  A   +K +             +G   +       V        
Sbjct: 482 DAMLRQALERIAEQAERAGRIIKSVHHFVRRRVQQRETLGADQLIDAVLPLVRLQARKSG 541

Query: 98  KRVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTIS------VQDSKNENI 148
            RV+V        L  +R    ++LLNL      ++     +          Q S     
Sbjct: 542 TRVEVDIPKRAPRLECDRTMLEQVLLNLTRNGIQAMENDTPLEERVLALRVRQASAQRVE 601

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNV 207
             +   G      E   ++      +  +   +       +  ++   L      D    
Sbjct: 602 IVVADRGPGI-PAEVAEKLFTPFYTTRTEGMGLGLSLCRTVVEQHGGTLEFGTGADGRGC 660

Query: 208 VLSALLE 214
                L 
Sbjct: 661 EFRFTLP 667


>gi|329961484|ref|ZP_08299565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531696|gb|EGF58525.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1361

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     L+ M L   +   I H++ +P+  I   L+ + +   +  + + +     +   
Sbjct: 816  KKRQQELNEMKLQFFI--NISHELRTPLTMILAPLQEVLDKVNDRWIHKQLEHVQKNTNR 873

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI------------- 109
             L  +     Y  +   +  L      I   +  +  +       +              
Sbjct: 874  LLHLVNQLMDYRRAELGVFHLKVRYTSIHQVVKKNFLLYDRTALRRNITYSFRSELEGRE 933

Query: 110  --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      I  NL   A      G  +T+++++  +  +  +K  G       K ++I
Sbjct: 934  VLCDPNYIELITNNLISNAFKYTNEGQSITVTLKEENDRLMLQVKDTGQGIPLH-KQSRI 992

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +     I    V  L   +   +  E  +      +  L 
Sbjct: 993  FERFYKVDSEHIGTGIGLSLVHRLVELHHGEVKLESAEGTGSTFTIYLP 1041


>gi|312978125|ref|ZP_07789870.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
 gi|310895100|gb|EFQ44169.1| sensor histidine kinase [Lactobacillus crispatus CTV-05]
          Length = 558

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 63/216 (29%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I  S ELL+     E        ++   S+    +    +RL+  
Sbjct: 327 FTANVSHELKTPLQSIMGSAELLENNLVKEDDRPAFYRKIHESSAQLLTLIDDIIRLSHL 386

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSRERAKILLNLFM 124
                   + +     V E   A+                  E     R   +I  NL  
Sbjct: 387 DENPEFEEVRMNLKSPVTEAIEALQASADKHEIELKAALADTEIKANFRLVYEIAYNLID 446

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            A      GG+V I+V++ + + I  +   G      E   +I +               
Sbjct: 447 NAIRYNNPGGQVKIAVKEVRGQAILRVSDTGIGIPL-EAQNRIFERFYRVDKSHNRKTGG 505

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V     +    +  E         + +  
Sbjct: 506 TGLGLSIVKHAVQQCHGTIRLESELGKGSTFTVVFP 541


>gi|298244532|ref|ZP_06968338.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297552013|gb|EFH85878.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 856

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 58/216 (26%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIRLKFMRLA--- 70
           S   H++ SP+ A+     LL               +  +          ++ +      
Sbjct: 635 SMASHELRSPLTALKMHTSLLRRQLAMQGFQTSAPALSSMETQINKVTRLVEELLDVSKI 694

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                     +VD    L +I   ++         V+ +     +       ++  NL  
Sbjct: 695 QAGRLEYRQETVDLDALLREIADTMQQTHPSHSILVRGAVQANLMADRDRLGQVFTNLIS 754

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-----IDSH 179
            A    P    V + ++ S       ++ +G      ++          +      I   
Sbjct: 755 NAIKYSPGAETVEMDLEASPETVTIRVRDHGLGIPREQRDKIFERFYRVTGPKQKAIPGL 814

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +  Y V  +   +   +  E       + +  L K
Sbjct: 815 GMGLYIVAEIVKRHGGTITVESAVGKGSIFTVTLPK 850


>gi|296534864|ref|ZP_06897196.1| possible histidine kinase [Roseomonas cervicalis ATCC 49957]
 gi|296264810|gb|EFH11103.1| possible histidine kinase [Roseomonas cervicalis ATCC 49957]
          Length = 555

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 64/223 (28%), Gaps = 27/223 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----------F 66
             + + H++ +P+ ++ +++E L  +   +   +L+ + +  A+   +            
Sbjct: 332 FAADVAHELRNPLTSVRSAIETLRRIENPEHQKRLLGIIAEDAVRMDRLIADIADSSRVD 391

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNL 122
             L+   +  VD    L  + ++       +  V              +     ++  NL
Sbjct: 392 AELSRTASEPVDIAPILSALAELHNTTRDEEGPVVELDMAPGPLVVRGVEGRLVQVFRNL 451

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS---- 178
              A +  P  G+V +  + +     F+++  G      +    I               
Sbjct: 452 LGNAISFSPERGRVWMRARPTGAMMEFTVEDEGPGIPEAKL-EGIFARFYTERPTGERFG 510

Query: 179 --HDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLSALLE 214
               +       +      R+  E   D             L 
Sbjct: 511 QHSGLGLSISRQIVEGLGGRISAENKRDEAGQVTGARFVVRLP 553


>gi|316935268|ref|YP_004110250.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315602982|gb|ADU45517.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 1157

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 54/224 (24%), Gaps = 25/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           A   + + H+I +P+  I    +L L++  +  +  + +     ++      +     ++
Sbjct: 655 ANFLANMSHEIRTPLNGIIGYADLVLEDQTLALDTRRQVIRIFEASDSLRVIIDDILDFS 714

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQV---------------SWTGEKIDLSRERAKIL 119
                 + L      +E  I     +                       +       ++L
Sbjct: 715 KIEALGVTLESKPLYVEQLIDNCMSIIQRKAEKKGLELRVDAQEIPAVLMGDGARLRQVL 774

Query: 120 LNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172
           LNL   A               +S    +     ++   G      +    F +    + 
Sbjct: 775 LNLLNNAVKFTDAGSVELNVACLSRVGDRARLRITVTDTGIGISAQDQKGLFKRFSQADE 834

Query: 173 E--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +       +  +            +E
Sbjct: 835 TISRKYGGTGLGLAISQRIVQAMGGEIGIDSAPGRGSTFYFEIE 878


>gi|317049900|ref|YP_004117548.1| integral membrane sensor signal transduction histidine kinase
           [Pantoea sp. At-9b]
 gi|316951517|gb|ADU70992.1| integral membrane sensor signal transduction histidine kinase
           [Pantoea sp. At-9b]
          Length = 452

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 64/205 (31%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
            T   D    LG++      +    +   +              + + NL + A      
Sbjct: 295 QTERADLNSVLGEVVAAESGYEREIENAVMPEELMLDINPLSIKRAVANLVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +   N   F ++ +G   +       F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGQEL--NRAWFQVEDDGPGIKPEQLQHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              ++  L   + +   + + A L 
Sbjct: 413 IDAHEGSLEIGVSERGGLRIRAWLP 437


>gi|227537033|ref|ZP_03967082.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227243125|gb|EEI93140.1| multi-sensor hybrid histidine kinase [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 582

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 69/226 (30%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           S   L     S + H++ +P+ ++   +++L  +  + +  +L  +   S     K   +
Sbjct: 353 SEEQLKNDFISIVSHELKTPLTSLMGYVQILQMILKDHQDERLTGILDRSKSQVSKMNSM 412

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------------- 116
             G+        G   +E+   +   +   +             E               
Sbjct: 413 ISGFLNVSRFEDGNLYLEKQSFEINEMISEIISDVLLTHSSHHIEFVPTQSIILYADRDK 472

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             +++ NL   A    P+  ++T+    +    + S++  G   +  E   ++       
Sbjct: 473 VGQVVSNLLSNAIKYAPQSKEITVKCALNSGNMLVSIQDRGIGIQQEEL-ERLFTRFYRI 531

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 TI    I  Y    +   +  R+  E  +    V    + 
Sbjct: 532 ENKQTKTISGFGIGLYLCAEIIKRHNGRIWAESKEGTGSVFHFTIP 577


>gi|149919726|ref|ZP_01908204.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
 gi|149819497|gb|EDM78927.1| sensory box histidine kinase/response regulator [Plesiocystis
           pacifica SIR-1]
          Length = 771

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 66/251 (26%), Gaps = 41/251 (16%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------ 52
           M   +     +  L  +  L   + H+I +P+  +  +L LL +   E   M+       
Sbjct: 371 MQSQLYL---ADRLATVGTLAVGVAHEINNPLSWVIGNLGLLADELDEQVRMRDAPDHDP 427

Query: 53  --------------------IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED 92
                                      A    +F R   G    VD    L    ++ + 
Sbjct: 428 VAVAASRARIRELLSRTQEGTERVRRIARDLGRFARPDSGDGQRVDVHALLDSTIEIADL 487

Query: 93  FIAVDKRVQVSWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KN 145
            +    R+   +              ++ LNL + A  ++  G      V          
Sbjct: 488 QVRHRARLLKHYQAVTPVLGSEARLGQVFLNLLVNAAQAIAPGTPRNNRVDVYTRNLDDG 547

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIID 203
                +   G     P+K  +I D    +    +   I       +   +   L+ E   
Sbjct: 548 RVEVEITDTGCGI-PPDKLERIFDPFFTTKPVGEGTGIGLAITHEIITAHGGELVVESQV 606

Query: 204 DHNVVLSALLE 214
           D        L 
Sbjct: 607 DVGTRFFVRLP 617


>gi|86157556|ref|YP_464341.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774067|gb|ABC80904.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 748

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 50/214 (23%), Gaps = 21/214 (9%)

Query: 22  ICHDIISPIGAI-HNSLEL--LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD 78
           + HD+ +P+ A+   +  L  L +        +       +A  R+  +        +++
Sbjct: 520 VSHDLRTPLSAVTLGAAALTRLRDGPDAAAQARRAAGRLAAAGRRMNRLIDDLLDLETLE 579

Query: 79  SLIGLGDIEQVIE---------DFIAVDKRVQVSWT-------GEKIDLSRERAKILLNL 122
                   E                   +   +                     ++L N+
Sbjct: 580 EGRLSMRPEPCDPADLLGEAADQLREAARAKGLDLCLSAAPGLPAVACDRDRVLQVLGNV 639

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI--VDGNVESTIDSHD 180
              A  +   G     +        +F ++  G      +             +      
Sbjct: 640 ASNAVKATEEGAVCLAAEAQGDGAVVFRIRDTGPGIPDADLPHVFDRFQRGSAARWRGSG 699

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L   +  R+  E        +S  L 
Sbjct: 700 LGLAIARGLVEAHGGRIWAESAPGAGTTVSFTLP 733


>gi|330953860|gb|EGH54120.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae Cit 7]
          Length = 685

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +++       S  + A+  L   I HD  + +  I  SLELL     +    +L R    
Sbjct: 296 LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGA 355

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     V+V  +   
Sbjct: 356 AQDASKRAASLTHRLLAFSRRQTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGL 415

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 416 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCV 475

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 476 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 534

Query: 210 SALLEK 215
              L +
Sbjct: 535 CLYLPR 540


>gi|298375623|ref|ZP_06985580.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298268123|gb|EFI09779.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 364

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 51/229 (22%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +     S  L +   + I H+I  P+ AI     LL +    +   + I L   + 
Sbjct: 129 MEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGELRQEYINLIQTNN 188

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTG 106
            +                          D    + +     +  +     +       + 
Sbjct: 189 ELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRGVALTYPASLDSF 248

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L N    A      G  +       +NE + S+   G       K   
Sbjct: 249 LLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAM-ENEVLLSVTDTGEGMSEEIKLHV 307

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +      R+               L 
Sbjct: 308 FDRFYKGRNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|298242676|ref|ZP_06966483.1| multi-sensor hybrid histidine kinase [Ktedonobacter racemifer DSM
           44963]
 gi|297555730|gb|EFH89594.1| multi-sensor hybrid histidine kinase [Ktedonobacter racemifer DSM
           44963]
          Length = 640

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 69/238 (28%), Gaps = 29/238 (12%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIRL----S 56
                  ++ V LL S I HD  + +G+I       L  +         +  I      +
Sbjct: 257 QLQQAQKLESVGLLVSGIAHDFNNMLGSILGYSSRGLSRISTSHPLYNNLAHIHEIATGA 316

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
           +      L F R        VD    + ++ + +   +A    +      E   +  +  
Sbjct: 317 AKMTQQLLAFSRRQVLEPTDVDLNKVVKNLLEFLGKVLADHIDIMFVPDPELHTVHVDYA 376

Query: 116 --AKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLA 158
              ++++NL + A  ++                   ++      ++   + +++  G   
Sbjct: 377 QIEQVVMNLCINARDAMAEGGRLTIRTRNVGHEEAERIGHGEMPAEAYVLLTVQDTGIGM 436

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +I +    +        +    V  +  ++   +  +         +  L 
Sbjct: 437 DEQTRS-RIFEPFFTTKEVGKGTGLGLSMVHGIVGQHNGYISVDSQVGKGTAFNIYLP 493


>gi|322420332|ref|YP_004199555.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126719|gb|ADW14279.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1039

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 56/233 (24%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLSSM 58
           +    N+  ++ + +L   I HD  + +  I  ++     +L+        +     +  
Sbjct: 654 EAQMLNMQKLESLGVLAGGIAHDFNNILTGIVGNISFTQMMLEPDHKAKGPLGKAEKACQ 713

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113
            A      +         +  L  +  +       +     V+                 
Sbjct: 714 RAAELAGQLLTFARGGQPIKKLFSVKHLAGESLSLVLRGTNVKGRLEIAESLDIVEADEG 773

Query: 114 ERAKILLNLFMVAHASLP------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +  +   N+ + A  ++P                         +    +    G      
Sbjct: 774 QINQAFNNIIINAVHAMPGGGNFTITGSNETMAPDNRLGLAPGSYVRLAFSDEGCGISDA 833

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D    +      +       +   +   +L + +       +  L 
Sbjct: 834 DLK-KIFDPYFTTKASGTGLGLASTHSIITRHGGVILVDSVLGRGTDFTIYLP 885


>gi|322420345|ref|YP_004199568.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126732|gb|ADW14292.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 884

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 67/241 (27%), Gaps = 33/241 (13%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII 62
              L +  L +L  L   I HD  + + AI  +++L L +V  +  +++ ++    +   
Sbjct: 497 QQMLHAQKLESLGVLAGGIAHDFNNILMAIIGNVDLSLMKVPPDSPIVEYLKNIEKATNR 556

Query: 63  -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   L +          +D    + ++E V+   I+    +++        +  + 
Sbjct: 557 AAYLAKQMLAYSGKGRFLIEKIDLNRVIEELEHVLRASISRTAALKIEVGRPLPAVEADS 616

Query: 116 AKILLNLFM---VAHASLPRGGKVTIS-------------------VQDSKNENIFSLKI 153
            ++   L      A  ++                               +      ++  
Sbjct: 617 NQVRQILMNLVLNASEAIAEHDGEITIRTGAVKLDQDSLKDVLLGEHMGAGGYVWLAVAD 676

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            G      E   +I D    +      +    V  +   +K  +              LL
Sbjct: 677 TGCGM-EKEVVEKIFDPFFTTKFTGRGLGLAAVHGIVRGHKGGIQICSEPGKGTSFKVLL 735

Query: 214 E 214
            
Sbjct: 736 P 736


>gi|158523277|ref|YP_001531147.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512103|gb|ABW69070.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1180

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEV-------GIEDEVMQLIR 54
           +    +   M+ V  L   + HD  + +  I    EL L ++           E++   R
Sbjct: 717 QEQLIHSQKMESVGRLAGGVAHDFNNMLNVILGYTELALQDMSPTDPLYEDLKEILDAAR 776

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            SS      L F R       ++D    +  + +++   I  D  +          ++ +
Sbjct: 777 RSSDITGQLLAFARRQTIAPRTIDLNDTVEGMLKMLRRLIGEDIDLVWEPGTGLWPINMD 836

Query: 115 RAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGN 156
            A++   L  +   +                  L                 + ++   G 
Sbjct: 837 PAQVDQVLANLLVNARDAISGVGKVTIETDNAVLDETYCADRPGFVPGEFVLLAVSDGGC 896

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + +    +    +   +    V  +  +N   +               L 
Sbjct: 897 GMDKT-TMNNLFEPFFTTKGVGEGTGLGLATVYGIVRQNNGFINVYSEPGQGTTFKIYLP 955

Query: 215 K 215
           +
Sbjct: 956 R 956


>gi|118579601|ref|YP_900851.1| histidine kinase [Pelobacter propionicus DSM 2379]
 gi|118502311|gb|ABK98793.1| histidine kinase [Pelobacter propionicus DSM 2379]
          Length = 527

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 68/248 (27%), Gaps = 35/248 (14%)

Query: 1   MAKNICFN----LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           M K         L +  + ++  L   + HD  + + AI    E+       DE +    
Sbjct: 127 MEKEKELLQFQFLQAQKMESVGRLAGGVAHDFNNILTAILGYSEIARLRAAHDEKLAECL 186

Query: 55  LSSM--------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                            L F R +      VD    + ++ +++   I  D  + +    
Sbjct: 187 DIIHDSGMKAASLVRQLLIFSRKSTLEPQVVDIRSLIDNMAKILARVIGEDVILGLQTES 246

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENI 148
              ++  + A++   +      A  ++P+GG                 +          +
Sbjct: 247 PVGNILVDPAQVEQIIMNLVVNARDAMPQGGTVTIRAEDVELDSSYTCSHLDLVPGPYVM 306

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
            S++  G     PE   +I +    +    +   +    V  +  +    +         
Sbjct: 307 LSVRDTGMGM-SPEVRARIFEPFFTTKEVGEGTGLGLSTVYGIVRQMAGHIYVYSEPGRG 365

Query: 207 VVLSALLE 214
                   
Sbjct: 366 SEFKVYFP 373


>gi|83646964|ref|YP_435399.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635007|gb|ABC30974.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 792

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 63/239 (26%), Gaps = 28/239 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAI 61
                  +    +   + + H++ +P+ AI    E+L E     + E  +++        
Sbjct: 268 TRNRAEEANKAKSRFLANMSHELRTPLNAIIGYSEMLQEVVAEDDYEREEILDDIGKVRS 327

Query: 62  I-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIED--------FIAVDKRVQVSWTG 106
                       + ++    G +   I    +E ++++              ++ V   G
Sbjct: 328 AGKHLLSLINDILDISKIEAGKMQISIEAFSMEDLVDEVAGALRLLADERRNKLVVRGAG 387

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGNLARF 160
           +   +  +     +IL NL   A      G    I  ++S   ++  +  ++  G     
Sbjct: 388 DVGVVHSDLVKVRQILFNLLSNAVKFTEDGVVELICERESVAGEDWMLCKVRDTGIGISD 447

Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +         +        A      +     +         L 
Sbjct: 448 RAIKELFRPFSQADPSTTRRYGGTGLGLAISRSYATMLGGEITVSSKEGEGSEFCIRLP 506


>gi|332703674|ref|ZP_08423762.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553823|gb|EGJ50867.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 1087

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/238 (7%), Positives = 60/238 (25%), Gaps = 29/238 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +         + + H++ +P+  +   +EL      + +    +R++  S  
Sbjct: 704 AREEAEAANRAK--TEFLANMSHELRTPLNGVLGMIELAGMSCADPKTHDFLRMAKDSGR 761

Query: 62  IRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           + L  +                        ++L        ++ +   +   + V  +  
Sbjct: 762 MLLDIINDLLDLAKIEAGKVELEKKVFNLREALDNTFYPVCMVAERKGLRCSLVVDQSVP 821

Query: 108 KIDLSR--ERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLAR 159
           +  +       +++ NL   A     +        ++         +  F +K  G    
Sbjct: 822 EHLVGDLGRFRQVVTNLVGNAVKFTEKGEVNLSVMRIPHPFATDSVQIRFRVKDTGIGIP 881

Query: 160 FPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    D      +  S      +       L +     +     +      +  
Sbjct: 882 QDMHNAIFDDFTQVGRSYSSKYGGTGLGLAISRNLVNLMGGDISVVSEEGKGSTFTFT 939


>gi|309792276|ref|ZP_07686748.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308225817|gb|EFO79573.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 749

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 57/218 (26%), Gaps = 27/218 (12%)

Query: 22  ICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70
           I H++ +P+  I  + +LL           +   ++ IR  + +    +  + +      
Sbjct: 513 ISHELRTPLTVIRGNADLLMRGLAGPLEDDQKVFIESIRQHAGNMTSLISNVIMIAGLDS 572

Query: 71  ----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM-- 124
                                 +     A    +++    +  ++  +  ++ +      
Sbjct: 573 GSLATDIEPLSIFRPADDAAWPLQSAIKAKGLTLRIEIAKDLPEILADFDQLRMIFHQLI 632

Query: 125 -VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN-----VEST 175
             A     +G  +  +    +      +   G         + F + + G+     + S+
Sbjct: 633 DNARRYTAQGEIIVRAQTLPEYML-VEVADTGRGIAPDMHEQIFERFIRGDGASEGINSS 691

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                +       L      ++  E            L
Sbjct: 692 ERGIGLGLAICKQLVERQGGKIWVESTPGQGSSFYFTL 729


>gi|242240530|ref|YP_002988711.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
 gi|242132587|gb|ACS86889.1| multi-sensor hybrid histidine kinase [Dickeya dadantii Ech703]
          Length = 1374

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       + +   +  + + H+I +P+ A+   L+LL    +          + ++A
Sbjct: 636 LEKAKRQADEANEAKTMFLANMSHEIRTPMNAVLGMLQLLLRNNLTPRQHAFASKAHIAA 695

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +        +V   + +     +    I +   +    
Sbjct: 696 TSLLGLLNDILDYSKIDAGKLELDPQPFDFNAVMQHLAIMFSGNLRAKSIELLFDLDPQL 755

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160
           +   I       ++L+NL   A      G  +  +V  +      +   S+  +G     
Sbjct: 756 SPYMIGDELRLQQVLINLLSNAIKFTDHGDVIVKTVLLAGDATTQQMRISVTDSGIGI-S 814

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL- 213
           PE+ T+I    +              +       L  +    L  +         S  L 
Sbjct: 815 PEQQTRIFGEFIQAEASTTRRYGGTGLGLVICKRLVEKMAGVLEVDSALGQGSTFSLTLT 874

Query: 214 -EK 215
             +
Sbjct: 875 FPR 877


>gi|238751334|ref|ZP_04612827.1| Aerobic respiration control sensor protein arcB [Yersinia rohdei
           ATCC 43380]
 gi|238710392|gb|EEQ02617.1| Aerobic respiration control sensor protein arcB [Yersinia rohdei
           ATCC 43380]
          Length = 799

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 62/217 (28%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 309 STISHELRTPLNGIVGLSRILLDTELDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 368

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                Q+    + I       +IL NL 
Sbjct: 369 KVQLDNQPIDFTGFMADLENLSGLLVQPKGLKFILEPQLPLPEKVITDGTRLRQILWNLI 428

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A      G  V    ++  +  IF ++ +G      E+                    
Sbjct: 429 GNAVKFTQHGKIVLRVWREGSDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPAT 488

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 489 GTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIK 525


>gi|212712306|ref|ZP_03320434.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
 gi|212685052|gb|EEB44580.1| hypothetical protein PROVALCAL_03392 [Providencia alcalifaciens DSM
           30120]
          Length = 928

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M K++     + +      ++  + + H++ +P+  I  ++ELL    + D+ ++L+   
Sbjct: 435 MEKSLQDVADAAEQANQAKSMFLATVSHELRTPLYGIIGNIELLQRYELSDKAVRLVSTM 494

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
             S+ + L+ +     ++      + + +      +  A                    +
Sbjct: 495 DNSSSLLLQIISDILDFSKIESKQLKIENKLFNCRNVFAYVLANYVPLATKKQVSLYSYI 554

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + +     +       +++ N+   +       G V + V   +N     +K +G     
Sbjct: 555 EPNIPDLMLSDPVRLQQVISNIVNNSIKFTDS-GFVMLHVWKDENYLKIEVKDSGIGMTP 613

Query: 161 PEKFTQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +      +       L +     +  +         +  + 
Sbjct: 614 AVVMQLFDPFFQVYDQNNGHKGTGLGLAICEKLINLMDGDIAVDSQAGLGSRFTIRIP 671


>gi|94264256|ref|ZP_01288050.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455301|gb|EAT05508.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 404

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 57/241 (23%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           A+ +     S ++  +   + + H+I +P+  +     LL    + DE     ++   S 
Sbjct: 157 AEELAREAQSANIAKSEFLANMSHEIRTPMNGVIGMASLLLAEDLSDEQRSYAQIIISSG 216

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +         +   + +    Q     I +   V    
Sbjct: 217 QALLELINQILDFSKIEAGRLELDCRPFSPRELVQEVAVLLQPQAAAQNITLTSEVSPGV 276

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLA 158
                       ++LLNL   A      GG                    F++K +G   
Sbjct: 277 PAVVEGDPVRLRQVLLNLVGNAIKFTEIGGVAMELSPAPADPAAPHCSLHFAVKDSGIGI 336

Query: 159 RFPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    F +    +           +       L       +  E  +         +
Sbjct: 337 PAEKLDLLFQRFQQVDGSTCRKYGGTGLGLAICRRLMELMGGEIGVESEEGKGSTFWFTV 396

Query: 214 E 214
            
Sbjct: 397 P 397


>gi|4376185|gb|AAC61655.2| hybrid histidine protein kinase-phosphate acceptor regulatory
           protein CvgSY [Pseudomonas syringae pv. syringae]
          Length = 600

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +++       S  + A+  L   I HD  + +  I  SLELL     +    +L R    
Sbjct: 211 LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGA 270

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     V+V  +   
Sbjct: 271 AQDASKRAASLTHRLLAFSRRQTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGL 330

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 331 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCV 390

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 391 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 449

Query: 210 SALLEK 215
              L +
Sbjct: 450 CLYLPR 455


>gi|83814352|ref|YP_446607.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
 gi|83755746|gb|ABC43859.1| two-component sensor histidine kinase [Salinibacter ruber DSM
           13855]
          Length = 959

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 63/225 (28%), Gaps = 23/225 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQLIRLSSMSAIIR 63
            L +   + I H+I +P+ +I    EL         L +  +      + R         
Sbjct: 723 RLKSAFLANISHEIRTPLTSIIGFAELIGSEAGALDLSDSPLPGYATMIERSGKRLLETL 782

Query: 64  LKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
              + L+   +G +                ++++         R+Q+       +     
Sbjct: 783 EGVLNLSKLQSGQMKLETAPVDLNEQIRWAVQELRPKAEEKGVRLQLETGCAVAEGDEGG 842

Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVD 169
            + ++ NL   A     +GG++ +    +++  +  ++  G            +  +   
Sbjct: 843 IQIVIRNLVSNAIKYTEQGGRIWVRSFQNEDRAVLEVEDTGIGMDPAVAESLFEPFRQAS 902

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +   +          +    +  +         +  L 
Sbjct: 903 EGLNREYEGTGVGLAVTNKAVAQMDGSIEVDTEKGEGTRFTIHLP 947


>gi|28896929|ref|NP_796534.1| osmolarity sensor protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|153837888|ref|ZP_01990555.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus AQ3810]
 gi|260365884|ref|ZP_05778378.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus K5030]
 gi|260877829|ref|ZP_05890184.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus AN-5034]
 gi|260895522|ref|ZP_05904018.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus Peru-466]
 gi|28805137|dbj|BAC58418.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748751|gb|EDM59596.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus AQ3810]
 gi|308088552|gb|EFO38247.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus Peru-466]
 gi|308089722|gb|EFO39417.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus AN-5034]
 gi|308113411|gb|EFO50951.1| osmolarity sensor protein EnvZ [Vibrio parahaemolyticus K5030]
 gi|328471704|gb|EGF42581.1| osmolarity sensor protein [Vibrio parahaemolyticus 10329]
          Length = 430

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 66/209 (31%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 220 EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 279

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHA 128
               +     +  +       E    V+    ++              + + NL + A  
Sbjct: 280 VNKESFESVDVSTIASDVASSEGGYEVEIETDLNMHLPPAKGSPIAIKRAVSNLVVNALR 339

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 K++  V   K      ++ NG      +    F     G+     +   +    
Sbjct: 340 YGNGWVKISTGVTADKQLVWICVEDNGPGIEQSQIAKLFEPFTRGDTARGSEGTGLGLAI 399

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++     +  ++      
Sbjct: 400 VKRIVIQHSGSVVMRNRSEGGLIAQISFP 428


>gi|163941748|ref|YP_001646632.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|229013216|ref|ZP_04170357.1| hypothetical protein bmyco0001_36300 [Bacillus mycoides DSM 2048]
 gi|229061675|ref|ZP_04199013.1| hypothetical protein bcere0026_37560 [Bacillus cereus AH603]
 gi|229134816|ref|ZP_04263624.1| hypothetical protein bcere0014_37240 [Bacillus cereus BDRD-ST196]
 gi|229168748|ref|ZP_04296469.1| hypothetical protein bcere0007_37040 [Bacillus cereus AH621]
 gi|163863945|gb|ABY45004.1| histidine kinase [Bacillus weihenstephanensis KBAB4]
 gi|228614760|gb|EEK71864.1| hypothetical protein bcere0007_37040 [Bacillus cereus AH621]
 gi|228648669|gb|EEL04696.1| hypothetical protein bcere0014_37240 [Bacillus cereus BDRD-ST196]
 gi|228717620|gb|EEL69278.1| hypothetical protein bcere0026_37560 [Bacillus cereus AH603]
 gi|228747983|gb|EEL97847.1| hypothetical protein bmyco0001_36300 [Bacillus mycoides DSM 2048]
          Length = 424

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 65/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        I  +K +G      +   ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDELIIIRVKDSGVGMTKEQLV-RLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|86148693|ref|ZP_01066971.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
 gi|85833512|gb|EAQ51692.1| sensory box histidine kinase/response regulator [Vibrio sp. MED222]
          Length = 1462

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 64/241 (26%), Gaps = 31/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      ++    +   + I H++ +PI  I   LEL+ E  + +E++ L    + SA 
Sbjct: 711 ARQKAERATAAK--SQFLATISHEVRTPISGILGLLELMQEHQLSEELLNLHGGLNQSAR 768

Query: 62  IRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             L  +     Y+                   L  +   + +      +           
Sbjct: 769 NLLHIVNDVLDYSKIEAGKLDLNPTEIELGKVLARIVQPQSIHAQQKGLAFHYWQDPNLA 828

Query: 108 KIDLSRER--AKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARFP 161
           +   + +    +IL N    A      G            + + +   ++   G      
Sbjct: 829 QWLFADDIRLHQILNNFLNNAIKFTEHGTISLHIDVIEQNEHQQKVSLTVSDTGIGI-PK 887

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VLSALL 213
           ++   +                   +     + L  +    +     +       ++  L
Sbjct: 888 DRQQSLFQPFEQVDKTTSRRFGGTGLGLSIALKLIEQMDGNIELSSEEGKGSHFTVTVTL 947

Query: 214 E 214
            
Sbjct: 948 P 948


>gi|298489788|ref|YP_003719965.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
 gi|298231706|gb|ADI62842.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
          Length = 1418

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 30/241 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
            +   F    ++ +  L   I HD+ + +  I  + +LL      +     +++ +I  ++
Sbjct: 1038 EEQFFRTQRLESIGTLAGGIAHDLNNILTPILGAAQLLKGRFAKDEERHPQLLAIIENNA 1097

Query: 58   MSAIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  +K +           G V     + +I Q+ +                   +S 
Sbjct: 1098 QRGAALVKQVLSFARGLKGERGIVQVKHLIAEIIQIGKQTFPKSIEFTTQIPENLWTVSG 1157

Query: 114  ER---AKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155
            +     ++L+NL + A  ++P GG                  +      N  + ++   G
Sbjct: 1158 DTTQLHQVLMNLVVNARDAMPEGGTLTITTENIYIDEAYTRMLIESKIGNYIVITVTDTG 1217

Query: 156  NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  E   +I +    +        +     + +   +   +               L
Sbjct: 1218 VGM-TKEILDRIFEPFFTTKEFKGGTGLGLSTALGILKSHNGFVTVSSQVGKGSTFKVFL 1276

Query: 214  E 214
             
Sbjct: 1277 P 1277


>gi|288556694|ref|YP_003428629.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
 gi|288547854|gb|ADC51737.1| two-component sensor histidine kinase [Bacillus pseudofirmus OF4]
          Length = 461

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/216 (9%), Positives = 61/216 (28%), Gaps = 23/216 (10%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS- 79
            I HD+ +P+  I     LL +  +E  V++           R++ +     +    +  
Sbjct: 245 NISHDLRTPLTYIKGYSALLKDQQLEPPVVKEQSNIIYQEASRMEHLVQDLFHLMKYEEG 304

Query: 80  -LIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRERAKILLNLFM 124
                 +   +   F  +  ++++                         +  + ++NL  
Sbjct: 305 SFHLDVERTDLKGFFDQIQTKLKLDIQSKQLNLKVHAANDDMYVAIDRGQFERAVMNLLS 364

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDS 178
            A      GG++ +++       +  ++ NG      +   +I +          + +  
Sbjct: 365 NAIRHTQPGGEINVALTRETQRCMIEIRDNGTGIPEKDL-DRIWERFYRVDSSRSTKLGG 423

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       + H +   +               + 
Sbjct: 424 SGLGLAITKEIIHLHHGLISVSSKMGEGTTFIIEIP 459


>gi|228989704|ref|ZP_04149686.1| hypothetical protein bpmyx0001_4740 [Bacillus pseudomycoides DSM
           12442]
 gi|228770038|gb|EEM18620.1| hypothetical protein bpmyx0001_4740 [Bacillus pseudomycoides DSM
           12442]
          Length = 400

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 178 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAIDISTISKECRRLSKLVANLLLLA 237

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +        + L  + D    I  +      +++      I       ++++
Sbjct: 238 RSDSNQIEMYKKEFALDELLTEVVDPYTEIAAYQEKKMTLEIESKVSFIGDRERIHQMVV 297

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES-TI 176
            L   A      GG + ++   + +     +K NG   +  E    F +   G+      
Sbjct: 298 ILLDNAMKYTDVGGTIQVACMQTNSSITIQVKDNGIGIKEEEIPKLFDRFYQGDKARTKA 357

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E   +       +L K
Sbjct: 358 EGAGLGLSIASWIVEKHHGKIKVESKMNEGTCFEVILPK 396


>gi|228995904|ref|ZP_04155562.1| hypothetical protein bmyco0003_5000 [Bacillus mycoides Rock3-17]
 gi|228763876|gb|EEM12765.1| hypothetical protein bmyco0003_5000 [Bacillus mycoides Rock3-17]
          Length = 361

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 139 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAIDISTISKECRRLSKLVANLLLLA 198

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +        + L  + D    I  +      +++      I       ++++
Sbjct: 199 RSDSNQIEMYKKEFALDELLTEVVDPYTEIAAYQEKKMTLEIESKVSFIGDRERIHQMVV 258

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES-TI 176
            L   A      GG + ++   + +     +K NG   +  E    F +   G+      
Sbjct: 259 ILLDNAMKYTDVGGTIQVACMQTNSSITIQVKDNGIGIKEEEIPKLFDRFYQGDKARTKA 318

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E   +       +L K
Sbjct: 319 EGAGLGLSIASWIVEKHHGKIKVESKMNEGTCFEVILPK 357


>gi|229003521|ref|ZP_04161339.1| hypothetical protein bmyco0002_4940 [Bacillus mycoides Rock1-4]
 gi|228757759|gb|EEM06986.1| hypothetical protein bmyco0002_4940 [Bacillus mycoides Rock1-4]
          Length = 403

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 181 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAIDISTISKECRRLSKLVANLLLLA 240

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +        + L  + D    I  +      +++      I       ++++
Sbjct: 241 RSDSNQIEMYKKEFALDELLTEVVDPYTEIAAYQEKKMTLEIESKVSFIGDRERIHQMVV 300

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES-TI 176
            L   A      GG + ++   + +     +K NG   +  E    F +   G+      
Sbjct: 301 ILLDNAMKYTDVGGTIQVACMQTNSSITIQVKDNGIGIKEEEIPKLFDRFYQGDKARTKA 360

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E   +       +L K
Sbjct: 361 EGAGLGLSIASWIVEKHHGKIKVESKMNEGTCFEVILPK 399


>gi|237729582|ref|ZP_04560063.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp.
           30_2]
 gi|226908188|gb|EEH94106.1| sensor histidine kinase/response regulator EvgS [Citrobacter sp.
           30_2]
          Length = 1080

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 60/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RL 55
           +       + +    +   + + H++ +P+ +I   +ELL    +     +         
Sbjct: 583 LENEKNKAIEATKAKSRFLASMSHELRTPVSSIVGFVELLSSSELSPAQRKEAIALTGAT 642

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVS 103
           +     +  K + +    +G    +    D+ Q+IE                     Q+ 
Sbjct: 643 AQSLLGLIGKILDVDKIESGKYQVVPQWTDLSQLIELQCHSFDALARQKGITLACVSQLP 702

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +   +IL NL   A               +   ++      ++   G    
Sbjct: 703 ANERVFVDQQALRQILTNLVGNALKFTEQGSIHVTARLMPEGENHGTLTIAISDTGCGIS 762

Query: 160 FPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E    F +   G          +  +    L       L    +       +  L 
Sbjct: 763 EEEQAGLFQRYAQGRCGRQQTGSGLGLFICKELVTLMGGTLELMSVPLQGTTFTITLP 820


>gi|261406783|ref|YP_003243024.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
 gi|261283246|gb|ACX65217.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
           Y412MC10]
          Length = 1017

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 58/224 (25%), Gaps = 23/224 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIR--- 63
            L     ++  H++ +P+  I    + L +           ++++L+++S          
Sbjct: 398 KLKDEFLAKTSHELRTPLHGIIGLADALIDGSSGKLPSPVIDLLRLMKVSGQRLAHLVND 457

Query: 64  ---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEKIDLSRER 115
                 ++        V   + L     +       +K+      Q+      +      
Sbjct: 458 ILDFSKLKHQEIGLVLVTVNLRLAVELTLQVLNPLAEKKGLRLSHQLPDDMYVMADENRL 517

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDG 170
            +IL NL   A A    G     + +         +  +G      +          ++ 
Sbjct: 518 QQILHNLIGNAIAYTETGTVTVTAKRLQGQ-VSVQITDSGIGISEADLDRIFESFEQINP 576

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              S      I       L   +  R+            S  L 
Sbjct: 577 LDRSQQGGTGIGLSITKKLVELHGGRIGVTSGVGEGSTFSFTLP 620


>gi|169634810|ref|YP_001708546.1| two-component sensor [Acinetobacter baumannii SDF]
 gi|169153602|emb|CAP02785.1| two-component sensor [Acinetobacter baumannii]
          Length = 452

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 60/215 (27%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD-- 78
            I H++ +P+  +   +E   +    +   +       S   R+  +        +++  
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 79  -------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KKIAKNQIIEMPSLMNQLFDDAQAYNADYGHTLNLHIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      FS++  G             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGEHAYFSVQDTGIGINPKHLPRLTERFYRVDSDRSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  +    L  +  ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQQGAYLDVQSKENEGSTFTAVFPK 445


>gi|161504417|ref|YP_001571529.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865764|gb|ABX22387.1| hypothetical protein SARI_02528 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 431

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 67/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQTLEGATREKALHTMREQTYRMEGLVKQLLTLSKIEA 268

Query: 80  LIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   E+V    +                    +V  +   +    +    + NL   
Sbjct: 269 APVLLLNEKVDVPMMLRVVEREAQTLSQNKHTFTFEVDDSLNVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+S +   +   F ++ NG      E   ++ +                
Sbjct: 329 AVNHTPAGTHITVSWRHVVHGAEFCVQDNGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  +         S +L 
Sbjct: 388 GLGLAIVKHALNHHESRLEVDSSPGKGTRFSFVLP 422


>gi|197117873|ref|YP_002138300.1| HAMP domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197087233|gb|ACH38504.1| sensor histidine kinase response regulator, HAMP domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 886

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 64/242 (26%), Gaps = 33/242 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L +  L +L  L   I HD  + + AI  + +L    L+      + +Q I  ++ 
Sbjct: 506 EQQLLHAQKLESLGVLAGGIAHDFNNLLTAIVGNTDLALMRLNPESPVRDNLQRIEQAAS 565

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    K M            ++D    + ++  ++E  I+    +  +       +  +
Sbjct: 566 RAADLSKQMLAYSGKGKFVIQTIDLNRLIREMTHMLEVSISKKAVLNFNLADPLPPIEAD 625

Query: 115 RAKILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLK 152
             ++   +  +   +                          G                + 
Sbjct: 626 ATQLHQIIMNLIINASEAIDRESGVISITTGSMQCARNYLNGIWLHEQLAEGLYVWLEIT 685

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G      E   +I D    +      +    V+ +   +K  +  +            
Sbjct: 686 DTGCGM-DAETAGKIFDPFFTTKFTGRGLGMAAVLGIVRGHKGAITVKSEPGRGASFKVF 744

Query: 213 LE 214
           L 
Sbjct: 745 LP 746


>gi|32400388|dbj|BAC78683.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREILTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 848 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|328468861|gb|EGF39821.1| putative histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 1051

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 65/238 (27%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 382 ERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTATQRDYVDTIETSSQ 441

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +                  + ++   T   +S+  +  I         ++  V +S    
Sbjct: 442 LLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKVKEKGIELTVSISPNTP 501

Query: 108 KIDLSRERA--KILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFP 161
              +  +    ++++N    A     RG       T+   +S+    FS++ +G      
Sbjct: 502 YHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAVIEFSVQDSGIGIDEQ 561

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   +I                   +       L       +  E            L
Sbjct: 562 Q-QKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|326625078|gb|EGE31423.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 788

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 298 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 357

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 358 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 417

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 418 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPAT 477

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 478 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 512


>gi|325958690|ref|YP_004290156.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330122|gb|ADZ09184.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 513

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 61/232 (26%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           + K++  +   ++  A + S   HD+  P+  I + L+LL            ++ +    
Sbjct: 286 LIKDLKMSNQELERFAYVSS---HDLKEPLRMIISFLQLLKSRYYNRLDQDANDFIDFAV 342

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEK 108
             +    + +  +          +      +I        +       D +V      + 
Sbjct: 343 EGAQRMDMMINDLLQFSRVGNEREFKYLDCEIVVKNTISHLSPLIENNDAKVVHGSLPKI 402

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-FSLKINGNLARFPEKFTQI 167
                   ++  NL   A                 + E+  F ++ NG          +I
Sbjct: 403 HANEELMTQLFQNLIGNAIKYRRDVAPKITIDYSEEEEDYLFIVRDNGIGIEAQHL-DRI 461

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +   I       +  ++  ++  +            + K
Sbjct: 462 FTVFQRLHSREEYEGTGIGLAISKKIVQQHNGKIWAKSEPGKGTTFYFTIPK 513


>gi|307824779|ref|ZP_07655002.1| multi-sensor signal transduction multi-kinase [Methylobacter
           tundripaludum SV96]
 gi|307734137|gb|EFO04991.1| multi-sensor signal transduction multi-kinase [Methylobacter
           tundripaludum SV96]
          Length = 659

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +++      S + H++ SP+ +I  + +LL+    +D+   +++     A
Sbjct: 419 LQQAKTMAEQTLEDQHQFLSMVSHEVRSPLASIKTATQLLELQAKDDDSAAILQRILRGA 478

Query: 61  IIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
               +F                    SVD    L  +          + R+ ++    + 
Sbjct: 479 HRLTQFFDNYLTFDRLNSMQWVLCQMSVDLPALLQTLRDHYTSIATHEIRLSLAPAVLQK 538

Query: 110 DLSRERAKILLNLFM----VAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKF 164
                 A++L  L       A    P G +V   +          S+   G      E  
Sbjct: 539 RWLYADAQLLPVLLDNLLENALKYSPSGSEVELSAYIGKDGGLCLSVSDQGVGIAADELD 598

Query: 165 TQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    + +       +  Y V  +A  +   +  +         +  L 
Sbjct: 599 LVFNKFFRSAQVGRVVGAGLGLYLVRQIAGLHGGSVQMQSRPGQGTTATLTLP 651


>gi|198246231|ref|YP_002217299.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|197940747|gb|ACH78080.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGISQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|167644688|ref|YP_001682351.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
 gi|167347118|gb|ABZ69853.1| multi-sensor hybrid histidine kinase [Caulobacter sp. K31]
          Length = 882

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 64/246 (26%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A   SR        + H+I +P+ A+    +LL +  +  E  + +
Sbjct: 383 RKRVEAELQQAKAAAESASRTKSDFLASMSHEIRTPMNAVMGIADLLAKTALTPEQDKYV 442

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------------- 99
           ++   S    L  +      +    S + L      + D +                   
Sbjct: 443 QIFRRSGDNLLNLINDILDLSKVEASQLDLEQTGFSLSDHLEKAIEMVAPKAQEKGLILI 502

Query: 100 --VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI----FSLKI 153
             +    + + +       ++LLNL   A      G       +D+         FS+  
Sbjct: 503 SEIAPDVSNDLVGDPTRLRQVLLNLLGNAIKFTQAGQVSLKVERDADGSVPTALRFSVAD 562

Query: 154 NGNLARFP---EKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G           F +    +           +       L      R+          V
Sbjct: 563 TGIGIAGDKLARVFERFTQADSSTTRRFGGSGLGLTISKRLVELMGGRIGVTSTLGQGSV 622

Query: 209 LSALLE 214
            +  + 
Sbjct: 623 FAFSVP 628


>gi|86146586|ref|ZP_01064908.1| nitrogen regulation protein [Vibrio sp. MED222]
 gi|85835643|gb|EAQ53779.1| nitrogen regulation protein [Vibrio sp. MED222]
          Length = 336

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL ++  +  + +  ++    A
Sbjct: 105 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLGKMLPDQSLNEYTQIIIEQA 163

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     D+  + 
Sbjct: 164 DRLRALVDRLLGPQKPGTKSEENLHQILEKVRQLVELESGSTLVIERDYDPSLPDILMDS 223

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           A++   +  +   +                    +  I  Q  K      +  NG     
Sbjct: 224 AQVEQAMLNIVSNAAQILKAQESGKITIRTRTVHQANIHGQRHKLAARIEICDNGPGI-P 282

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V        +       L  ++  ++  E    +    +  L 
Sbjct: 283 DELKDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGN-TTFTIYLP 335


>gi|311277662|ref|YP_003939893.1| integral membrane sensor signal transduction histidine kinase
           [Enterobacter cloacae SCF1]
 gi|308746857|gb|ADO46609.1| integral membrane sensor signal transduction histidine kinase
           [Enterobacter cloacae SCF1]
          Length = 450

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 61/205 (29%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +                  + + N+ + A      
Sbjct: 295 PMELADLNAVLGEVVAAESGYEREIETELQPGDIPVRMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G   +       F   V G+   +     +    V  +
Sbjct: 353 NGWIKVSSGREPNRVWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L  +      +++ A L 
Sbjct: 413 IDNHNGLLEIDTSKRGGLLIRAWLP 437


>gi|294507653|ref|YP_003571711.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|294343981|emb|CBH24759.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 936

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQ 51
           + +       +  L + L + + H+I +P+ +I    E          L +     +  +
Sbjct: 693 LREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKELDLPDDSPLPKYAE 752

Query: 52  LIRLSSMSA-IIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQV 102
           LI  S           + L+    G ++                E++       +  +Q+
Sbjct: 753 LIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEELRPRAEEKEVSLQL 812

Query: 103 SWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +   + +  NL   A      GG+V +     +    F ++  G      
Sbjct: 813 ETEAAWAEADKGGVQILARNLLSNAVKYTEAGGRVRLRTYREEGAVAFEVEDTGIGMDPE 872

Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +  +              I          + +  +  E        ++  L +
Sbjct: 873 TAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVETEKGEGTRITVWLPR 931


>gi|260551685|ref|ZP_05825759.1| two-component system response regulatory system sensory kinase
           [Acinetobacter sp. RUH2624]
 gi|260405428|gb|EEW98922.1| two-component system response regulatory system sensory kinase
           [Acinetobacter sp. RUH2624]
          Length = 369

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +    +   L   + H+I +P+  I  + +LL     ++   +   +       
Sbjct: 126 SKEENLIQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLNDESYAEFTDVIINEVDR 185

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                    G         V+    L  +  +I +      ++   +     D+  +R +
Sbjct: 186 LTNLADTMLGSRQLPSYENVNVHEPLERVRSLIANQTKKKIKITRDYDLSLPDVKADRDQ 245

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNE---------------------NIFSLKINGN 156
           ++  +  ++  ++    +      D + E                         ++ NG 
Sbjct: 246 LIQVMLNISVNAIQAITENKSFFIDQEPELILRTRIQRLVTINGVLNRSAVRVDIEDNGP 305

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V        +       + H++   +  + +     + S  L 
Sbjct: 306 GIPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGK-TMFSLYLP 361


>gi|124006173|ref|ZP_01691009.1| tetratricopeptide repeat domain protein [Microscilla marina ATCC
           23134]
 gi|123988350|gb|EAY28003.1| tetratricopeptide repeat domain protein [Microscilla marina ATCC
           23134]
          Length = 734

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++      S  +   L S I HD+ SP+  +   L L+          ++  L+S   
Sbjct: 497 LQESQEELHLSNSMKDRLFSVIAHDLRSPLNTVSGFLNLMRLQKEAMTPEEIQELTSQMI 556

Query: 61  IIR-----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                               +  M++        + +    ++  +      ++    + 
Sbjct: 557 NSVKSTLDLLDNLLNWSRSQMGLMKMKVQSVNLPELVDDTFNLLALNAQSKKIELVKNLD 616

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-- 161
            + + +  ++    ++ NL   A      G     S    K++   +++  G        
Sbjct: 617 ASCQVMVDAQMIDIVIRNLVSNAIKFTSEGSITVHSQAIGKHQVEVTVQDTGVGLAPENA 676

Query: 162 ---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               K                 +       L  +N  ++  E           +L 
Sbjct: 677 RKLFKVDSHFTTEGTHQEKGTGLGLLLCKELVEKNGGKIWVESEPGKGSSFKFILP 732


>gi|16759646|ref|NP_455263.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhi str. CT18]
 gi|25512233|pir||AD0587 sensor protein KdpD [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
 gi|16501938|emb|CAD05166.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhi]
          Length = 902

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 62/241 (25%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
           A      L+S +             ALL + + HD+ +P+  +    E+L          
Sbjct: 649 ASEEQARLASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSP 707

Query: 51  QLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + S +   I            +  ++            +       +      +   
Sbjct: 708 HARQASEIRQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHP 767

Query: 100 VQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           + +S   +   +  +     ++L+NL   A         + I      N     +  NG 
Sbjct: 768 ITLSLPQQLTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDNRLQLDVWDNGP 827

Query: 157 LARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                +    F +   GN ES +    +       +   +   L               L
Sbjct: 828 GIPAGQEQKIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTL 887

Query: 214 E 214
            
Sbjct: 888 P 888


>gi|186683715|ref|YP_001866911.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466167|gb|ACC81968.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1504

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 52/216 (24%), Gaps = 21/216 (9%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
            + + H++ SP+  I    ++L      +        S    +     +            
Sbjct: 1135 AILSHELRSPLNPILGWTKMLQSRKFNETKTAQALASIERNVKLQTQLIDDLLDIAKILR 1194

Query: 71   ------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                        +  +    D         ++     +   G+    S    +I+ NL  
Sbjct: 1195 GKLSLDVTPVNLLFVIESAIDTVNTAAIAKSIQLHPVLPNIGQVSGDSNRLQQIVWNLLS 1254

Query: 125  VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
             A    P+GG+V I ++    +    +   G                             
Sbjct: 1255 NAIKFTPKGGRVEIRLERVDEQAHIIVSDTGKGINPEFLPHIFESFRQEDVSITRKYGGL 1314

Query: 180  DIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
             +    V  L   +   +  +   +      +  L 
Sbjct: 1315 GLGLAIVRQLVEAHGGTITADSPGEGLGATFTVQLP 1350


>gi|320353531|ref|YP_004194870.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
 gi|320122033|gb|ADW17579.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
            2032]
          Length = 1145

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 29/234 (12%)

Query: 10   SSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMS----AI 61
              M+ V  L   + HD  + +  I    EL    ++        ++ I  +         
Sbjct: 771  QKMESVGQLAGGVAHDFNNMLSVILGYAELALRKMEVPEPLHGYLEEIVKAGRRSSEITR 830

Query: 62   IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
              L F R        +D    +  + +++   I  D  ++   T +   +  +  ++   
Sbjct: 831  QLLAFARQQTIAPRILDLNETVEGMLKMLRRLIGEDVVLRWVPTPDLWPIRMDPTQVDQL 890

Query: 122  LFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            L  +   +                    +      S     +  + ++  NG+     + 
Sbjct: 891  LANLCVNARDAIAGVGNITIETGRATFDQAYCAGRSGVMPGDFVLLAVSDNGSGI-ERDL 949

Query: 164  FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +I +    +        +    V  +  +N+  +               L +
Sbjct: 950  LDKIFEPFFTTKDVGRGTGLGLATVYGIVKQNEGFINVYSEPGVGTTFRIYLPR 1003


>gi|315269643|gb|ADT96496.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella baltica OS678]
          Length = 438

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  ++  ++D ++  I     
Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R     +  +  +  L       E   A +  V ++   E    +    ++
Sbjct: 280 IISQFIAYIRQDQETSRELGQINKLIQDVAQAEANRAGEIEVVLTDCPEAQFQAIAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS Q       F+++ NG      +    F     G++   
Sbjct: 340 LSNLVENAFRYGS--GWIRISSQFDGKRIGFTVEDNGPGIDESQITKLFQPFTQGDIARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   ++ ++      +  +     L 
Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQVTLSNRAEGGLRAQVWLP 436


>gi|294010479|ref|YP_003543939.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
 gi|292673809|dbj|BAI95327.1| signal transduction histidine kinase [Sphingobium japonicum UT26S]
          Length = 511

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 61/235 (25%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +     +    L A+  + S + H++  P+ A+   LE + ++  E +          
Sbjct: 267 LKELQAELVHVSRLSAMGTMASTLAHELNQPLAAVALYLETIRDMLDERDDEPFVSLRSV 326

Query: 51  -----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101
                Q    +         F+          +    + +  Q+      +         
Sbjct: 327 MDDAAQETLRAGHIVRRLRDFVARGEVDKSLHELPQVIAEASQLALVGARERGIRSFFAV 386

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLA 158
                  +    +  ++L+NL   A  ++           +          +++  G   
Sbjct: 387 DPAATPVLVDRVQIQQVLVNLMRNAIEAMAECPVRDLKVATRLRPDGLIEVTVEDTGPGI 446

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  Q+      +  D   +       +   +  R+  E  D         L
Sbjct: 447 ADG-IREQLFTAFNSTKADGMGLGLSICRTIIEAHGGRIWMERPDRGGTRFHFTL 500


>gi|259415818|ref|ZP_05739738.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter sp. TrichCH4B]
 gi|259347257|gb|EEW59034.1| periplasmic sensor signal transduction histidine kinase
           [Silicibacter sp. TrichCH4B]
          Length = 600

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIED------E 48
           +A        S  L AL  + + + H++  P+ A+   L     LL     ++       
Sbjct: 361 LAVAEQSLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRNRPDEALSSFGR 420

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSW 104
           +  LI            + R        V+    L     ++E  +        R+    
Sbjct: 421 IDDLIERMGAITRQLKSYARKGGDAFSPVNMGDALASSLSMMEPQLRQRHVQITRILPDE 480

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
               +       ++++NL   A  +     +  + +   +      +++ NG+  +  + 
Sbjct: 481 PVYVMADRMRLEQVMVNLLRNALDATKSVEEPEVEIILAAGETATLTVRDNGDGIQDFDS 540

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +    D   +       + ++   RL     +    V    L 
Sbjct: 541 ---LFEPFYTTKQPGDGVGLGLAISSGIVNDLGGRLTARNSEAGGAVFEMQLP 590


>gi|238758290|ref|ZP_04619468.1| Aerobic respiration control sensor protein arcB [Yersinia aldovae
           ATCC 35236]
 gi|238703413|gb|EEP95952.1| Aerobic respiration control sensor protein arcB [Yersinia aldovae
           ATCC 35236]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 59/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G  V    ++  +   F ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGKIVVRVHREDTDRLTFEVEDSGMGIPEEEQDKIFAMYYQVKDHNGGQPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVQSRQGAGSCFTLTIQ 504


>gi|217037907|gb|ACJ76425.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 927

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 54/224 (24%), Gaps = 25/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +   + + H++ +P+  I    ++++    +     ++  L+        +  + +  + 
Sbjct: 404 STFLATMSHELRTPLNGILGMAQIIESNIKDKEQHKQIKMLLESGDHLLFLLNEILDFSK 463

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRERAKIL 119
                ++          +IE        V             ++     I       +I+
Sbjct: 464 IEQNKLELNHASFYFVDIIEPITNTYLSVCENKGLKFIIDNKINNEIVFIGDKPRIRQII 523

Query: 120 LNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVDG----- 170
            NL   A      G              K      +K  G   R                
Sbjct: 524 FNLISNAVKFTHEGSITLNFSHTLTGKGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEA 583

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +         +    V  L    +  +     +      + +L 
Sbjct: 584 STTRQYGGTGLGLAIVKQLTDIMRGYISVSSSEGKGSCFTLVLP 627


>gi|153938174|ref|YP_001389703.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|170754692|ref|YP_001779988.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|152934070|gb|ABS39568.1| sensory box histidine kinase [Clostridium botulinum F str.
           Langeland]
 gi|169119904|gb|ACA43740.1| sensory box histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|295317791|gb|ADF98168.1| sensory box histidine kinase [Clostridium botulinum F str. 230613]
          Length = 615

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            KNI     S     L+    S I H++ +P+  I  +++LL   +E   +++  + ++L
Sbjct: 346 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEEDCNDEKQDKYLKL 405

Query: 56  SSMSAIIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVS 103
              +    +K +      T                  +       V     +    +   
Sbjct: 406 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVNLIEEITLSVTSYAESKGINIIFD 465

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      A      GG + ++V+DS       +K  G     
Sbjct: 466 TNVEEKIIAVDTDKIERIILNLLSNAIKFTNPGGNIFVNVKDSGENVYVHVKDTGVGIPS 525

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +K  +  +            L 
Sbjct: 526 DKLESIFERFFQVDKTLKKNKEGTGIGLHLVKSFVEMHKGTVHIKSELGQGTEFIIKLP 584


>gi|149202574|ref|ZP_01879546.1| histidine kinase [Roseovarius sp. TM1035]
 gi|149143856|gb|EDM31890.1| histidine kinase [Roseovarius sp. TM1035]
          Length = 348

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 16/240 (6%), Positives = 57/240 (23%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +++     +  +     + + H++ +P+ A+   +E L      +    D  + +++  +
Sbjct: 102 EDLTEREHAAQMRRDFVANVSHELRTPLTALMGFIETLQGPARHDQAAIDRFLGIMQSEA 161

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEK 108
                 ++ +                              +          +        
Sbjct: 162 ARMERLVRDLLSLSRVESEERVRPREEVNLGQVIGSVLHALRPLARDRACEITFEAPDGM 221

Query: 109 IDLSRERA--KILLNLFMVAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           I    +    ++  NL   A               ++           +  ++  G    
Sbjct: 222 IVRGNDDQLQQVFTNLIENAIKYGGTGNHITITLERIVRDATLRAPAILARVRDQGPGIE 281

Query: 160 FPEKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +    +    +    V  + + ++ RL            S +L 
Sbjct: 282 PLHIPRLTERFYRVDTHRSREMGGTGLGLAIVKHIVNRHRGRLRISSTLGEGAEFSVILP 341


>gi|125717942|ref|YP_001035075.1| histidine kinase [Streptococcus sanguinis SK36]
 gi|125497859|gb|ABN44525.1| Histidine kinase, putative [Streptococcus sanguinis SK36]
          Length = 344

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +       S     ++ +++ HDI +PI +I  ++E + +       +   +  I   
Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +      ++ + +                       LI +    Q++ +    D  +QVS
Sbjct: 166 TERLNKLVEELDVLTLNAQPRIESDGEAEIVFLDQLLIEVMSEFQLLIEREERDIYIQVS 225

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               KI    ++ ++IL+NL   A      G K+ I  Q +      S+K  G      +
Sbjct: 226 PESAKIKSHYDKLSRILVNLINNAFKYSDPGTKIEIVAQLTDQILTISVKDEGRGIASED 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +       LAH+    ++ E         +  L
Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEIMVESQCGLGSTFTFTL 341


>gi|154252489|ref|YP_001413313.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156439|gb|ABS63656.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 379

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 66/232 (28%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEV------GIEDEV 49
           +    ++S  + +  + S + H++  P+ AI N +       E LD+        + D+ 
Sbjct: 143 QEELVHVSRTNEMGQMTSALAHELNQPLTAIMNYVRAAARTIEGLDDPAAIRARELIDKA 202

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEK 108
            +    +         F+     +    D    + +   +        + +V V +    
Sbjct: 203 AEQTGRAGQIIRRLRDFVEKREAFRAEEDLNQTIREAIALALIGASDSNVKVAVDFDPNI 262

Query: 109 IDLSRERAKILLNLFM---VAHASLP---RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             +  +R +I   +      A  ++    R   +  +  D       S    G      E
Sbjct: 263 SPVIMDRIQIQQVVVNLVRNAVEAMQSVERREILIKTGTDEPGYIYASFADTGPGL-PEE 321

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +++    V +      I       +   +  RL               L 
Sbjct: 322 VASRLFQPFVTTKEKGMGIGLSICQTIVKAHGGRLWAARDGSDGTTFRFRLP 373


>gi|120608933|ref|YP_968611.1| histidine kinase [Acidovorax citrulli AAC00-1]
 gi|120587397|gb|ABM30837.1| histidine kinase [Acidovorax citrulli AAC00-1]
          Length = 645

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 59/233 (25%), Gaps = 21/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN------SLELLDEVGIEDEVMQL 52
           +       + +  L  L  + + + H++  P+ A+        +L+         E +QL
Sbjct: 407 LRGTRDAAVQAGKLAVLGQMAAGMSHELNQPLAALQTLSDNAVALDRQGRREDVAENLQL 466

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSW 104
           I   +      ++ ++        V     + D        +A                 
Sbjct: 467 IGQLAARMGRIVRQLKSFVRKETPVLQPCRVRDALDHALLLLAQRCTAVQARIDVQPFDA 526

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLARFPE 162
               +       ++L+NL      ++       +              +   G     PE
Sbjct: 527 GLRVMADPTRLEQVLVNLLRNGLDAVQDRPVREVRFAPASDDGWVRLRVSDTGGGI-APE 585

Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALL 213
              ++ +    +       +      ++       L  E I        +  L
Sbjct: 586 VRGRLFEPFFTTKAGEGLGLGLAVSRIIVEGMGGTLTVEDIPEGGGAGFTVTL 638


>gi|119484858|ref|ZP_01619340.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457676|gb|EAW38800.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 650

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL---------- 69
           + + H++ +P+ +I   + L+    +    ++               +            
Sbjct: 285 AVLSHELRTPLNSILGWITLIQRGKLNQTTLEQALEVIERNASIQTQLIEDLLDISRISR 344

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-RERAKILLNLF 123
                       V+ +    D  +   +  ++   + +      I        ++  NLF
Sbjct: 345 GQLNLNINSVNLVELIQTTVDTVRPAAEAKSIAIELILDHRINIISGDGNRLQQVFWNLF 404

Query: 124 MVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTID 177
             A    P+ G VTI   +   +     +  +G             + +  D +   +  
Sbjct: 405 SNAIKFTPKEGSVTIKLNKVEDSYAQIKVIDSGIGIEPNFLPYVFEYFRQADASTTRSQG 464

Query: 178 SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              +       L   +   +  E        V   +L 
Sbjct: 465 GLGLGLAISRHLVELHGGTIDVESEGKGKGSVFIVMLP 502


>gi|118478502|ref|YP_895653.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
 gi|118417727|gb|ABK86146.1| sensor histidine kinase [Bacillus thuringiensis str. Al Hakam]
          Length = 457

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 220 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 276

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 277 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 336

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 337 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 396

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 397 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 452


>gi|157371505|ref|YP_001479494.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Serratia proteamaculans 568]
 gi|157323269|gb|ABV42366.1| integral membrane sensor hybrid histidine kinase [Serratia
           proteamaculans 568]
          Length = 957

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 24/221 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++  + + H++ +P+  I  +L+LL    +   V +L+   + S+ + LK +     ++ 
Sbjct: 474 SMFLATVSHELRTPLYGIIGNLDLLQTKALPQGVDRLVNAMNNSSGLLLKIISDILDFSK 533

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +   E    + I                     ++ +             ++L
Sbjct: 534 IESEQLKIEPREFSCLEVITHIAGNYLPLVVKKRLGLYCFIEQNVPERISGDPVRLQQVL 593

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173
            NL   A       G + + V    +   FS++  G      E   ++ D   +      
Sbjct: 594 SNLLNNAIKFTDT-GCIILQVCTRGSYLEFSVRDTGVGIPEKEIT-RLFDPFFQVGSGVQ 651

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       L +     +  E       + +  + 
Sbjct: 652 RHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSLFTIRIP 692


>gi|91776799|ref|YP_546555.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylobacillus flagellatus KT]
 gi|91710786|gb|ABE50714.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylobacillus flagellatus KT]
          Length = 365

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     +       LL   + H+I +P+G +  + +LL+    +  + +  ++    A 
Sbjct: 120 AREERMLIQQQANAELL-RNLAHEIRNPLGGLRGAAQLLEHELPQVSLREYTQVIIKEAD 178

Query: 62  IRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
                M               +    L  +  ++        +++  +     +L  +R 
Sbjct: 179 RLQLLMDRLLVPHRVPKYEPTNIHEVLERVRSLLLAESPRGIQIRRDYDTSLPELIGDRE 238

Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK---------------INGNLA 158
              + +LN+   A  ++             +      +                 NG   
Sbjct: 239 KLIQAVLNIARNAVQAMLNNPGEQAPEIILRTRAARQVTLAKKRYRVAIKLQIIDNGPGI 298

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P+   +I    V        +          ++   +  E         + LL 
Sbjct: 299 -PPDIRERIFYPLVSGREGGTGLGLTLAQTFITQHHGMIECESEPGR-TTFTILLP 352


>gi|59713420|ref|YP_206195.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
 gi|12620414|gb|AAG60694.1|AF319618_1 RscS [Aliivibrio fischeri]
 gi|59481668|gb|AAW87307.1| hybrid sensor kinase RscS [Vibrio fischeri ES114]
          Length = 927

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 54/224 (24%), Gaps = 25/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +   + + H++ +P+  I    ++++    +     ++  L+        +  + +  + 
Sbjct: 404 STFLATMSHELRTPLNGILGMAQIIESNIKDKEQHKQIKMLLESGDHLLFLLNEILDFSK 463

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRERAKIL 119
                ++          +IE        V             ++     I       +I+
Sbjct: 464 IEQNKLELNHASFYFVDIIEPITNTYLSVCENKGLKFIIDNKINNEIVFIGDKPRIRQII 523

Query: 120 LNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVDG----- 170
            NL   A      G              K      +K  G   R                
Sbjct: 524 FNLISNAVKFTHEGSITLNFSHTLTGKGKQAVQIKIKDTGVGIRENRLKHIFEPYIQAEA 583

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +         +    V  L    +  +     +      + +L 
Sbjct: 584 STTRQYGGTGLGLAIVKQLTDIMRGYISVSSSEGKGSCFTLVLP 627


>gi|42522179|ref|NP_967559.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39574710|emb|CAE78552.1| two component sensor histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 666

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-EVMQLIRLSSMSAII 62
                  +  L +L  + + H+I +P+ AI    +LL E  +++ E +Q + +   +   
Sbjct: 287 ERQQAEQASQLKSLFLANMSHEIRTPLAAIIGFSDLLKESNLDESERLQYVNIIHRTGEH 346

Query: 63  RLKFMR-----------LAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTG 106
             + +                 +  V+    L D+  ++     +  + V+   +     
Sbjct: 347 LTRIINDILDLSKVEAGHLEMQSHPVNLNSLLEDLHILMVARVGDKPVHVEFNRRGIVPD 406

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +IL N+   A       G V ++ + S +  +F++K  G      ++   
Sbjct: 407 MIRTDPLRLRQILTNIIGNAIKFTD-QGYVRMTYEISGSNLLFTVKDTGVGISSAQRSNL 465

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPE-IIDDHNVVL----SALLEK 215
               +          +   +       LA      +  E              S  + K
Sbjct: 466 FQAFSQIDNSVSRKYEGTGLGLVLSRRLAQMMGGDVHLEDSEPGKGCTFIVKISLDIPK 524


>gi|329963868|ref|ZP_08301210.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
 gi|328527121|gb|EGF54127.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides fluxus YIT 12057]
          Length = 479

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL   
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDKRVGALNDEQEQLSNS 301

Query: 56  SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              +A                    +++    T  ++ +       QV  D   +   V+
Sbjct: 302 IKENADRLLGITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVE 361

Query: 102 VSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       S + A +L NL   A       G+V I  +   +     ++  G    
Sbjct: 362 YPEEKMPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKHDGDFVEMYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  +            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSELGKGSRFILRLK 478


>gi|327394559|dbj|BAK11981.1| sensor kinase protein RcsC [Pantoea ananatis AJ13355]
          Length = 880

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   +  L+   
Sbjct: 383 MEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQLPSGIDSLVTAM 442

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +        + I                     +
Sbjct: 443 NNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSLVVKKRLTLYCYI 502

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A      G  +  +          + +  G     
Sbjct: 503 EHDVPQALDGDPLRLQQVISNLLNNAIKFTHTGCIILHAYVTQGYLAFRT-RDTGVGIPA 561

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  E            + 
Sbjct: 562 KELT-RLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEPGMGSQFIVRIP 620


>gi|313148589|ref|ZP_07810782.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137356|gb|EFR54716.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 768

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 58/226 (25%), Gaps = 21/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAII 62
            + +L     + + H+I +P+ AI     +L        +   + +++ ++  +S   + 
Sbjct: 536 ENAELKQSFLANMSHEIRTPLNAIVGFTNILVDETAGELDEEEKKDMIGIVNHNSELLLK 595

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------ 116
            +  +        +    +        I   I    +V +    E      +        
Sbjct: 596 LISDVLDISRLDSNNQEFVIERYDLAKIVSEIYRTHQVIIHPPVEFRLKMDDSWTVYVAV 655

Query: 117 ------KILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169
                 +++ N    A+     G        D    E    ++  G              
Sbjct: 656 DKLRLIQVISNFLSNANKFTAEGSITLGCEVDPGRAEVGIYVEDTGKGIDTGHLNAIFDR 715

Query: 170 GNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +      ++A     R+  +         + +L 
Sbjct: 716 FYKADEFAQGTGLGLSICKVIATRLSGRVEVQSQVGKGSRFTLVLP 761


>gi|312960671|ref|ZP_07775177.1| sensor histidine kinase/response regulator hybrid [Pseudomonas
           fluorescens WH6]
 gi|311285197|gb|EFQ63772.1| sensor histidine kinase/response regulator hybrid [Pseudomonas
           fluorescens WH6]
          Length = 728

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 69/242 (28%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
           +A+       S  L A+  L   + HD  + +  I +S++ L + G+ +E  Q       
Sbjct: 346 LAQAEAALRQSQKLEAIGQLTGGVAHDFNNLLTIIRSSVDFLRQPGLPEERRQRYMSAVS 405

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                +S      L F R         D    + +I +++E       RV V  +     
Sbjct: 406 DTVERASKLTSQLLAFARRQPLNPEVFDVGQRVQNIGEMLESVTGARIRVLVELSPHACF 465

Query: 111 LSRERAKILLNLFM---VAHASL-------------PRGGKVTISVQDSKNENIFSLKIN 154
              + ++    L      A  ++                  +       +     SL   
Sbjct: 466 ARVDSSQFETALINIALNARDAMGGQGTLTLRVAGEQPLPGIRGDAGSRRPHIAISLADT 525

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     PE   +I +    +        +    V   A ++   +          V +  
Sbjct: 526 GPGI-TPETAERIFEPFFTTKAVGKGTGLGLSQVFGFAKQSGGNIDVASTLGQGSVFTLY 584

Query: 213 LE 214
           L 
Sbjct: 585 LP 586


>gi|255010784|ref|ZP_05282910.1| two-component system histidine kinase [Bacteroides fragilis 3_1_12]
          Length = 790

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 58/226 (25%), Gaps = 21/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAII 62
            + +L     + + H+I +P+ AI     +L        +   + +++ ++  +S   + 
Sbjct: 558 ENAELKQSFLANMSHEIRTPLNAIVGFTNILVDETAGELDEEEKKDMIGIVNHNSELLLK 617

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------ 116
            +  +        +    +        I   I    +V +    E      +        
Sbjct: 618 LISDVLDISRLDSNNQEFVIERYDLAKIVSEIYRTHQVIIHPPVEFRLKMDDSWTVYVAV 677

Query: 117 ------KILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVD 169
                 +++ N    A+     G        D    E    ++  G              
Sbjct: 678 DKLRLIQVISNFLSNANKFTAEGSITLGCEVDPGRAEVGIYVEDTGKGIDTGHLNAIFDR 737

Query: 170 GNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +      ++A     R+  +         + +L 
Sbjct: 738 FYKADEFAQGTGLGLSICKVIATRLSGRVEVQSQVGKGSRFTLVLP 783


>gi|218780671|ref|YP_002431989.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762055|gb|ACL04521.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 781

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +        M+ +  L   + HD  + +  I    E+    LDE       +Q I+ ++ 
Sbjct: 399 EAQVQQAQKMESIGRLAGGVAHDFNNMLSIISGCAEMALEDLDENAPIAANLQEIQKAAK 458

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
            +    + +             + L +  + +   ++      +       D   +    
Sbjct: 459 RSADLTRQLLAFARRQTIAPKALNLNETIESMLKMLSRLIGEDIDLAWRPKDRLWKVMID 518

Query: 117 -----KILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKINGN 156
                +IL NL + A  ++ R G                       S    + ++  NG 
Sbjct: 519 PSQVDQILANLCVNAKDAIERDGKITIETNNMFFGEEYCRDHEGFKSGEYVMIAVSDNGC 578

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   ++ +    +        +    V  +  +N   L                 
Sbjct: 579 GI-KKENMDKLFEPFFTTKKIGQGTGLGLATVYGIVKQNNGFLNIYSEPGEGTCFKLYFP 637

Query: 215 K 215
           +
Sbjct: 638 R 638


>gi|182413970|ref|YP_001819036.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
 gi|177841184|gb|ACB75436.1| integral membrane sensor hybrid histidine kinase [Opitutus terrae
           PB90-1]
          Length = 635

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 67/243 (27%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLS 56
            + +       +  +       + + H+I +P+  I  S +L+     +  E  +  RL 
Sbjct: 231 TRELQLASQQAEAASRAKSEFLANMSHEIRTPLNGIIASADLMIQRADLPAEAREHARLI 290

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------------IEDFIAVDKRV 100
           + S  + L  +     ++      I L D                        + +   V
Sbjct: 291 TQSGDLLLNLLGDILDFSKIEAGQITLEDHVFELESTVTDTVALLASRAATAAVQLQVAV 350

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGN 156
             +        S    ++LLNL   A    P GG+V ISV  +         F ++  G 
Sbjct: 351 APAVARNFEADSYRLRQVLLNLLGNAVKFTPAGGRVQISVTAAGEGDPRPVRFEIRDTGI 410

Query: 157 LARF---PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                     F +    +           +       L      RL  E       +   
Sbjct: 411 GMDETTLRRIFERFTQADSSTTRRYGGTGLGLAISFRLVEMMGGRLAVESAPGQGSIFYF 470

Query: 212 LLE 214
            L 
Sbjct: 471 TLP 473


>gi|188591971|ref|YP_001796569.1| multi-site sensor histidine kinase [Cupriavidus taiwanensis LMG
           19424]
 gi|170938345|emb|CAP63330.1| putative multi-site Sensor histidine kinase [Cupriavidus
           taiwanensis LMG 19424]
          Length = 1478

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 50/234 (21%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                  +          S I H+  +P+  +   LE L       E   ++ ++  + +
Sbjct: 367 RAEALAEIDRAKTA--FFSNISHEFRTPLTLMLGPLEDLVRRASPGEDRAMLEMTHRNGL 424

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG 106
                                      +      D+  +    +                
Sbjct: 425 RLLKLVNALLDFSRIESGRVTMRRQPTNVAALTADLASLFRASVEAAGITLRVDCPPLAR 484

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                      I+LNL   A      G                +++  G      E   +
Sbjct: 485 PVAVDRDMWETIVLNLVSNAFKFTFAGAITVAVAPHGDGGVALTVRDTGVGIPAAELP-R 543

Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +           TI+   I    V  L       +  + +       +  L 
Sbjct: 544 IFERFHRVEGAQGRTIEGSGIGLALVQELVRLQGGTIDVQSVPGEGTCFTVRLP 597



 Score = 96.8 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 68/233 (29%), Gaps = 28/233 (12%)

Query: 10   SSMDLVALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMSAI 61
              M+ +  L   + HD  + +  I  +L+LL                 +  +   +  A 
Sbjct: 945  QKMEAIGNLTGGVAHDFNNLLQVIGGNLQLLARDLAGDDRAEPRLRNALAGVARGAKLAS 1004

Query: 62   IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
              L F R        V+    +  ++ ++   +     ++        +   +  ++   
Sbjct: 1005 QLLAFGRRQPLAPRVVNLGRLVRTLDDMLRRALGDGIEIETVVAPNLWNTLVDPFQVENA 1064

Query: 122  LFM---VAHASLPRGGKVTISVQD--------------SKNENIFSLKINGNLARFPEKF 164
            L      A  ++   G++TI+ ++                   + S+   G     PE  
Sbjct: 1065 LLNLAINARDAMQGHGRLTIAARNALPGEAADEPAGAGPMQYVLLSVTDTGVGM-PPEVQ 1123

Query: 165  TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              + +    +  +     +    V     ++   +       H   ++  L +
Sbjct: 1124 EHVFEPFFTTKPEGQGTGLGLSMVYGFIRQSDGHVKIFSEPGHGTTVTLFLPR 1176


>gi|152994945|ref|YP_001339780.1| multi-sensor signal transduction histidine kinase [Marinomonas sp.
           MWYL1]
 gi|150835869|gb|ABR69845.1| multi-sensor signal transduction histidine kinase [Marinomonas sp.
           MWYL1]
          Length = 771

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 4   NICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS----LELLDEVGIEDEVM------Q 51
                + +  L  L  L + + H++  P+ AI       L+ LD    E          Q
Sbjct: 518 TQRELIQTAKLAVLGQLSAGLNHELNQPLTAIRAFAGNGLKFLDRGQYEQAHANLQHISQ 577

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           L             F R    + G +     +    +++           V    +   +
Sbjct: 578 LGHHMGDIIARFKVFARKGDVHQGPIAVQTAIVGALKIMSPRYKEVGIELVVTEDQGFIV 637

Query: 112 SRER---AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           + +     ++L+NL   A  ++        +V I    + N+ +  ++ +GN     +  
Sbjct: 638 NGDMVFLEQVLVNLLANAADAILEAPNNPRRVHIEQISTGNQVMICVQDSGNGL-SDDAI 696

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + +    S        +       +      ++  +  D         L +
Sbjct: 697 RHLFEPFFTSKSSGVGLGLGLSISQRIVEAMGGQISAQNRDSGGAEFCVRLPR 749


>gi|219848094|ref|YP_002462527.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219542353|gb|ACL24091.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 354

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 62/237 (26%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRL 55
           A++      +++ +      +   + H++ +P+  I   LE L +     E +    ++ 
Sbjct: 112 AESFNQMAEALEQIEQRRVTMIGNVAHELRTPLAGIEGYLEGLIDGVLPAEADTFLEMKH 171

Query: 56  SSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                   +  ++                +  +      +  ++  + D        +  
Sbjct: 172 EVRRLHRLVDDLQTLSRVEAGQISLHFTTFDINEVIRHVVSQLQPQVLDGCLKIICERTD 231

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                       A+ILLNL   A    P GG +T+           +++  G        
Sbjct: 232 QPILTRADPDRVAQILLNLLGNAVRYTPEGGCITVRSDLVNEWVKVTVEDTGIGIAPEHL 291

Query: 163 --KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              F +      +         I       LA      +             +  L 
Sbjct: 292 PYIFERFYRADPSRSRASGGSGIGLTIARHLAWAMGGDITAYSAGLGKGSRFTLTLP 348


>gi|114800094|ref|YP_760221.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
 gi|114740268|gb|ABI78393.1| sensor histidine kinase/response regulator [Hyphomonas neptunium
           ATCC 15444]
          Length = 944

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 68/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    +L  + + H+I +P+ AI     L+    +  +    +   + + 
Sbjct: 187 LTQRTREAEEANRAKSLFLASMSHEIRTPMNAILGFCHLIARTDLSPKQKDHVSKINDAG 246

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSW 104
           +  L+ +     ++              D    + +   +         + ++ R+  + 
Sbjct: 247 VSLLRLINDILDFSKNEAGKLTLEARPFDVRAAITNQINLVNIDADNKRVKLETRISPAV 306

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
             + I       +++LNL   A      G  +  +     QD       S++ +G     
Sbjct: 307 PRKIIGDELRFNQVVLNLLSNAVKFTENGTVIVRADVASSQDRDVVLELSVRDSGIGMDE 366

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++       +              +       +  +    +  E         +  ++
Sbjct: 367 QQQAKLFKSFSQADSSTTRQFGGTGLGLAICRQIVEQMGGNIRVESKIGEGSTFTFRIK 425


>gi|71906118|ref|YP_283705.1| histidine kinase [Dechloromonas aromatica RCB]
 gi|71845739|gb|AAZ45235.1| histidine kinase [Dechloromonas aromatica RCB]
          Length = 616

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIH---NSLE-LLDEVGIED------E 48
           +       + +  L     L + I H++  P+ A+     + E  L+   ++        
Sbjct: 379 LRAAQDELVQAGKLAVIGQLSTGIAHELNQPLAALRTLSANAERFLERGDVDTTRTNLGR 438

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSW 104
           +  L+            F R + G +  V     L +   +++  I       +R     
Sbjct: 439 IADLVDRMGRITGQLRNFARKSSGQSAPVPLCHALDNALALLDARIRRAGAEIERSCPVD 498

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPE 162
               +  +    ++L+NL   A  ++    +  +    + ++      ++ +G      E
Sbjct: 499 EPVALCDANRLEQVLINLVGNALDAMADQTRPRLELAWECAEGMVRLHVRDHGPGL-SDE 557

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +    +    D   +       +  +    L      D   + +  L 
Sbjct: 558 ALAHLFEPFFTTKPAGDGLGLGLAISAGIIRDFGGSLHGANHPDGGAIFTLELP 611


>gi|157162694|ref|YP_001460012.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
 gi|157068374|gb|ABV07629.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           HS]
          Length = 778

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 53/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      +            +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDIKVTSEQGKGSTFTLTI 503


>gi|320109334|ref|YP_004184924.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319927855|gb|ADV84930.1| PAS/PAC sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 513

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 73/233 (31%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +     + S  L A+  L + I H+I +P+ A+ N L ++++   + E  + +  +   
Sbjct: 270 KQAEAALIQSEKLAAVGRLAASISHEINNPLEAVTNILYIVEQSVQDAETQKYMTTAQAE 329

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTGEKID 110
                + +     +     +   L   E +                  +V      + + 
Sbjct: 330 LQRVSQIVTHTLRFHRQATNPRALTAEELLEPTLGLHHGRLSNSNIDVQVHHCGAQQIVC 389

Query: 111 LSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  ++L NL   A  S+          +     + + +    ++   G+     E  
Sbjct: 390 YEGDIRQVLNNLIGNAIDSMKTGGRLVIRTRDACLWKSNVSGVRITISDTGHGM-TQEVR 448

Query: 165 TQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEI--IDDHNVVLSALLE 214
            +I +    +  I+   +  +    +  ++   L       +    V S  L 
Sbjct: 449 ARIFEPFYTTKGINGTGLGLWISQGIVEKHHGLLQVRSAITEGSGTVFSLFLP 501


>gi|297583439|ref|YP_003699219.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
 gi|297141896|gb|ADH98653.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus selenitireducens MLS10]
          Length = 466

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 63/230 (27%), Gaps = 22/230 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAI 61
             +       A +   I H++ +P+  I    ELL+    E     E   +I   +    
Sbjct: 234 ALDTEDEKKRAFIQ-NISHELRTPLSYIQGYSELLENQCREQSANSEYAVIIHREAHRMN 292

Query: 62  IRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             +  +              +F      + +       ++          + +       
Sbjct: 293 RLVNQLIDLTKLEKVERTELSFSPLVLSEIIEEAARNTKLKRSDKEQSLTLNLDDGLIVN 352

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQ 166
            +     +I +NL   A +    GG +T+S  +       +++ NG      +      +
Sbjct: 353 GIEDRLLQIFINLLDNASSYTGSGGHITVSAIEKIGMASITVEDNGQGIPKEQIPFLTER 412

Query: 167 IVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +         I    V  +   +   +  E  +     ++  + 
Sbjct: 413 FFRVEKSRTREKGGVGIGLSIVKQIVELHDGDIHFESEEGTGTAVTIDIP 462


>gi|284167215|ref|YP_003405493.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284016870|gb|ADB62820.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 817

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/230 (7%), Positives = 53/230 (23%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
            + +  +   ++  A   S   HD+  P+  + + L+LL+       +    + +   + 
Sbjct: 589 QRKLEESNERLEQFAYAAS---HDLQEPLRMVTSYLQLLESRYADELDGDAAEFIEFAVD 645

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEK 108
            +     +    +  +   T                    +          + +    + 
Sbjct: 646 GAERMRKMIDGLLEYSRVETQGEPLEPIDLGEIVDDAIGNLQVKIEETGADITLDSLPQV 705

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KF 164
                +  ++  NL   A                   +    S++  G      +    F
Sbjct: 706 RGDESQLQQVFQNLLSNALEYSGDEPPRVRISADRRGSRWKISVRDEGIGIEPEDQDQIF 765

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +         I       +   +   +  +         S  L 
Sbjct: 766 EVFQRLHGREEHPGTGIGLSLCQRIVERHDGEISVDSEPGEGTTFSFTLP 815


>gi|239994404|ref|ZP_04714928.1| histidine kinase [Alteromonas macleodii ATCC 27126]
          Length = 523

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 60/235 (25%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV------ 49
           +      ++  L  L        + + H++ +P+  I    ++ L +    +E+      
Sbjct: 279 RTRALKEANNKLTQLDAKRRQFMADVSHELRTPLTIIRGEAQVTLRQAAASNEIYKETLE 338

Query: 50  --MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRV 100
             ++     S      L   R              L ++                 D + 
Sbjct: 339 TILEQAVNLSKLVDDLLLLARAEMHEFTVDLVKSDLHNLLTQNMALWQKLTKPRDLDLKW 398

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             +   + +      A++L  L   AH        + + V+        S+  +G     
Sbjct: 399 LANNEVQVLIDKDRIAQVLTILIENAHNYSYPDTPIVLRVESEGPNINVSVIDSGEGISS 458

Query: 161 PEKFTQIVDG-NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +          ++   +   +       +A  +   L            +  L 
Sbjct: 459 SDLQHVFERFVRLKRKGNGMGLGLSIAKAIAEAHHGTLSAHSTLGKGSQFTLTLP 513


>gi|229131347|ref|ZP_04260247.1| hypothetical protein bcere0014_3180 [Bacillus cereus BDRD-ST196]
 gi|228652091|gb|EEL08028.1| hypothetical protein bcere0014_3180 [Bacillus cereus BDRD-ST196]
          Length = 369

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 20/226 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +     +     +  + + I H+I +P+ A+    ++  E   ED +     +     
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNPEDTM--SYEIMLQEI 202

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------EQVIEDFIAVDKRVQVSWT-GEKI 109
                F+           +     +I           +       V   +QV        
Sbjct: 203 ERINGFVSELMLLGKPKPTNYEWCNIGEILLYVVQLMESYATQYKVKFNLQVDGNLPVIN 262

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              ++  ++LLN+      S+P GG + I + + +      S++  G      EK  +I 
Sbjct: 263 GDDKQLKQVLLNIIKNGIESMPGGGNIQILAYEKAGENLCISVEDQGLGI-ENEKIEKIG 321

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +   +       +  E++  +  E        +   L 
Sbjct: 322 KAFYTTKENGTGLGLMITYKIIEEHQGSIAIESSMGIGTKVEIYLP 367


>gi|254458661|ref|ZP_05072085.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
 gi|207084427|gb|EDZ61715.1| Nitrate and nitrite sensing family [Campylobacterales bacterium GD
           1]
          Length = 1088

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 64/240 (26%), Gaps = 29/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            ++      + +  ++  + + H+I +P+  I    ELL + G+ +E  + + +   S+ 
Sbjct: 392 REDKESAQEASEAKSMFLANMSHEIRTPLNGIVGFTELLKDTGLGEEQHEFVEIIEKSSE 451

Query: 62  IRLKFMRL----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             L+ +                                    +  E  I +   +  +  
Sbjct: 452 NLLEIINNILDLSKIESNKLEIEDIVFNPIDEFESAVEVYAVRASEKHIDLGCFIDPTLE 511

Query: 106 GEKIDLSRERAKILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLAR 159
                   +  +I++NL   A              +     QD K    F ++ +G    
Sbjct: 512 HPLKGDPTKIKEIIINLLSNAVKFTSSAGSINVDIRRVECDQDGKTRVRFEVQDSGIGV- 570

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E+ ++I +        +        +               L               +
Sbjct: 571 TSEQKSRIFEAFSQADTSITRKYGGTGLGLTISSRFVELMGGELDLHSETGSGTTFFFTI 630


>gi|254460391|ref|ZP_05073807.1| sensor protein GacS [Rhodobacterales bacterium HTCC2083]
 gi|206676980|gb|EDZ41467.1| sensor protein GacS [Rhodobacteraceae bacterium HTCC2083]
          Length = 718

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 60/234 (25%), Gaps = 26/234 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +      L  + + H+I +P+  I    +LL E G+ +E    +     S  
Sbjct: 205 ARYQAETANRAKSAFL--ANMSHEIRTPMNGIVGMADLLSETGLGEEQRLFVDTIRNSGE 262

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------------QVSWT 105
             L  +     Y+      + L       E  I    R+                 +   
Sbjct: 263 ALLTIINDVLDYSKIEAERLELRPTTFDFEQCIHEVMRLLQPPARDKDIALLVDYDLFLP 322

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI---FSLKINGNLARFPE 162
            + +       +IL N+   A    P G  +       ++       +++  G     P+
Sbjct: 323 TQVVGDPGRIRQILTNIIGNAVKFTPSGHVLISVTGTHEDGVCDLRVTIQDTGIGIPAPK 382

Query: 163 KFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                 +            +   +       L      ++     +        
Sbjct: 383 IDHIFGEFNQVDDEQSREFEGTGLGLSITKRLVELMGGQIWVTSENGEGTCFGF 436


>gi|218779067|ref|YP_002430385.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760451|gb|ACL02917.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 897

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 70/242 (28%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M + +   +  ++ +  L   I HD  + +  I    ELL E       E +  + I  +
Sbjct: 510 MERQLQ-QIQKLEAIGALAGGIAHDFNNLLFPIVGMSELLLEDLDPESPEHDYAKEIFSA 568

Query: 57  SMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-- 110
                  +K    F R A      +     +G+  ++    I V+  +Q     +     
Sbjct: 569 GRRGSDLVKQILAFSRQAEQEKSPIRLQDIVGEALKLSRASIPVNVEIQQDIRKDCGWIL 628

Query: 111 -LSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKIN 154
               +  +I++NL   A  ++                    +           + S+  N
Sbjct: 629 ADPTQMHQIIMNLITNAFHAVEDISGTISVSLKETELCLDDLWSKALAPGKYVVLSVCDN 688

Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          +I +    +        +    V  +  ++K  +           ++  
Sbjct: 689 GVGIDPS-IMQKIFEPYFTTKKQGKGTGLGMALVHGIVKDHKGDIRLYSEPGKGTTVNVY 747

Query: 213 LE 214
           L 
Sbjct: 748 LP 749


>gi|156977333|ref|YP_001448239.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|156528927|gb|ABU74012.1| hypothetical protein VIBHAR_06119 [Vibrio harveyi ATCC BAA-1116]
          Length = 985

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H+I +P+  +  +  LL + G+     +   + + S  
Sbjct: 459 ARKQAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLIDSGLNPMQKRYAEIINRSGK 516

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +     Y+              D    + D  Q++              ++    
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRSLGFDLHQMVEDTFQLMNGKAQEKKLLFSYHIESDVG 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                      ++L NL   A      G          + +++ +F +   G      +K
Sbjct: 577 RYWKGDVTRINQVLSNLVGNAIKFTEEGEIDIYVSLNPEDESQVLFEVSDTGIGIAKKDK 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T                   +       +       L  +  + H       + 
Sbjct: 637 KTLFDAFTQAEGGMNQTGGTGLGLAISRRIIQAMGGCLDVDSEEGHGSRFWFSIP 691


>gi|161527697|ref|YP_001581523.1| histidine kinase [Nitrosopumilus maritimus SCM1]
 gi|160338998|gb|ABX12085.1| histidine kinase [Nitrosopumilus maritimus SCM1]
          Length = 598

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 81/228 (35%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQ 51
            +     L    L A+  L  R+ HD+ +P+  +  S+ELL +   +           + 
Sbjct: 365 EEKTQEILKQERLSAIGELSGRLAHDLRNPLSIMKLSVELLKKQPSDRTFSDADVQKRLD 424

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           LI  S      ++  +      +    +   + ++ +   + I V   V++  + + +++
Sbjct: 425 LIDKSITRISHQVDDVLGYVRNSPLRLANSSVHELLKTSIEKINVPSNVKIIISEKDVNI 484

Query: 112 SRERAK---ILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           + +  K   + +N  + +  +L   G K+TI + ++ ++       +G      +    +
Sbjct: 485 NCDPVKIDAVFINFLINSIQALSDNGGKITIDISETDDKVKLEFSDSGPGI-PEDIIDNV 543

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +      +       +   ++  +  +         +  + K
Sbjct: 544 FEPLFTTKQKGTGLGLASCKNIVELHQGTISVKNNP---TTFTIEMPK 588


>gi|167035402|ref|YP_001670633.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
 gi|166861890|gb|ABZ00298.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida GB-1]
          Length = 585

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + S  L AL  + + + H+I  P+      LE L             + ++ 
Sbjct: 347 LRTAQEGLVQSAKLAALGQMSAAMAHEINQPLTTQRMQLETLRLLLDHGRHDEARQALEP 406

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104
           +             ++     +       +D    +     +         V+  + ++ 
Sbjct: 407 LEQMLTRMAALTSHLKTFARNSPVGLRERLDLATVVDQALHLLEARIRSEEVEVALYLAR 466

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPE 162
                  +    ++L+NL   A  ++         I ++        S+  +G      +
Sbjct: 467 PAWVRGDAIRLEQVLINLLRNALDAMADKRYKRLEIRIEPDGELWRLSVLDSGGGIAEAD 526

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++ D    +    +   +       + HE   +L  E +      LS  L +
Sbjct: 527 L-AKVFDPFFTTKPVGEGLGLGLAISYGIVHEAGGQLQAENLPG-GARLSLTLPR 579


>gi|119715984|ref|YP_922949.1| ATPase domain-containing protein [Nocardioides sp. JS614]
 gi|119536645|gb|ABL81262.1| ATP-binding region, ATPase domain protein [Nocardioides sp. JS614]
          Length = 602

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 68/242 (28%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELL------DEVGIEDEV 49
           A+ +   + S +L +L        S + H++ +P+  I   LEL+            + +
Sbjct: 297 ARAVEGRIQS-ELRSLDTARDDFVSNVSHELRTPLTTISGYLELVAEEFEGRMDPPHERM 355

Query: 50  MQLIRLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--- 100
           ++  R +       +  +               VD  + + +    +    A  +     
Sbjct: 356 LEATRRNVARLKALIDDLLALSRAEGRRSDFEPVDLALLVREAVTDVRITAARRRIRLEV 415

Query: 101 -QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +       + LLN+   A       G V + +     +    +  +G    
Sbjct: 416 DTPEDVVPVLADRAMLHRALLNVLSNAVKFSHDDGTVDVVLTVLGGQVEVRVTDHGIGIP 475

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             E   ++            + I    +       +   +   ++ E  +     +   L
Sbjct: 476 GAEI-ERLGTRFFRASNAVTNEIAGTGLGLRITQTIIDRHSGEVVIESEEGEGTSVVVRL 534

Query: 214 EK 215
            +
Sbjct: 535 RR 536


>gi|90425240|ref|YP_533610.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
 gi|90107254|gb|ABD89291.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB18]
          Length = 452

 Score =  109 bits (273), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 75/259 (28%), Gaps = 46/259 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISP---------------------IGAIHNSL 37
           + +     +    + +L  L + + H++ +P                     +GAIH   
Sbjct: 193 LQRAQRQLVEQEKMASLGRLVAGVAHELNNPISFVYGNIHTLERYRQRLGRYLGAIHGGA 252

Query: 38  E---------------LLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           +               LLD+ G + +  ++     S       +   L  G    VD   
Sbjct: 253 DAAEIDRLRHELRIDALLDDSGSLIEGTLEGAMRVSDIVKNLRRLSFLKAGEAQPVDIER 312

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGE--KIDLSRERAKILLNLFMVAHASLPRGGKVTIS 139
            +    +      A    +      +   +    +  +I++NL   A  ++    +  I 
Sbjct: 313 VIRTAARWASRAKAGRAEIFFDIEKDLSIVGNEGQFHQIIVNLVDNALDAVRGEPEPLIE 372

Query: 140 V--QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195
           +  +    E + ++  NG          +I +    +    +   +  +    +A E   
Sbjct: 373 ISARRRGPEAVIAIADNGPGLAEG-LIDKIFEPFFTTKPVGEGTGLGLWISYGIAREYGG 431

Query: 196 RLLPEIIDDHNVVLSALLE 214
            L          V +  L 
Sbjct: 432 ALAAANRCGGGAVFTLTLP 450


>gi|332094548|gb|EGI99594.1| phosphate regulon sensor kinase PhoR [Shigella boydii 5216-82]
          Length = 431

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEPPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|317050810|ref|YP_004111926.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316945894|gb|ADU65370.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 864

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H++ +P+  I   ++LL +  +++E  +  RL+S SA 
Sbjct: 201 ARDQAEGANRAK--SQFLANMSHELRTPLSGIIGMVDLLLDTRLDNEQQEYARLASDSAH 258

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQV----------------IEDFIAVDKRVQVSWT 105
             L  +     ++      + + + E                   +  I +   V     
Sbjct: 259 ALLALINDILDFSKIEAGKLEIEEAEFSLGSLTEGVTELFALAAQKKGIVLTSYVDPQLP 318

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFP 161
                 +    ++L NL   A     +G                   F +   G      
Sbjct: 319 AYVRGDALRLRQVLANLLSNALKFTEKGSVQLQVKILGDGGQAPLIRFEVCDTGIGV-DA 377

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++                   +       L       +  E            L 
Sbjct: 378 EVAERLFQSFTQADSSTTRKYGGTGLGLAICRNLVELMGGEIGIESRLGQGSTFWFTLP 436


>gi|308125838|ref|ZP_07663534.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|308111657|gb|EFO49197.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 778

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 65/238 (27%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 382 ERAKDDAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLADTPLTATQRDYVDTIETSSQ 441

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +                  + ++   T   +S+  +  I         ++  V +S    
Sbjct: 442 LLLSLINDVLDFSKIESGMLLISPHSTCVRESIYDIASIVSPKAKEKGIELTVSISPNTP 501

Query: 108 KIDLSRERA--KILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFP 161
              +  +    ++++N    A     RG       T+   +S+    FS++ +G      
Sbjct: 502 YHIVIDDHRLRQVIMNFMSNAVKFTERGSVELSITTLESNESEAIIEFSVQDSGIGIDEQ 561

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   +I                   +       L       +  E            L
Sbjct: 562 Q-QKRIFAPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGSIQLESEKGRGSRFYFQL 618


>gi|298243414|ref|ZP_06967221.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297556468|gb|EFH90332.1| multi-sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 705

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 69/242 (28%), Gaps = 31/242 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----------------LDEVGI 45
           A      L  M    ++ +   H++ +P+ A+   +EL                L++   
Sbjct: 464 AHRRLQELDQMKDQFMMTA--SHELRTPLTAVQGYIELVVQYGDVLPPEERADFLEKARR 521

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV---DSLIGLGDIEQVIEDFIAVDKRVQV 102
             + + ++  + M A    + + +       V   ++   +  + +        +  VQV
Sbjct: 522 GCDELTMLLSNVMDASRLERDVIIRPALLKRVSVSEAFESVTLMIEPNLTREKRELHVQV 581

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLAR 159
           +             ++LLN+ + A      G  +       Q         +   G    
Sbjct: 582 ADDLSVQADPMRLRQVLLNVCVNALKYSEPGTPLYLSASVYQAPGAVVSIDVTDRGKGIA 641

Query: 160 FPE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEII--DDHNVVLSAL 212
             +    F +     G+V S +    +  Y    L      ++              +  
Sbjct: 642 PEDQELVFQRFYRLEGDVNSPVRGSGLGLYISRRLIEAMGGKIWITSSGIPGEGSTFTIQ 701

Query: 213 LE 214
           L 
Sbjct: 702 LP 703


>gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 870

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 63/242 (26%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +       + + H++ +P+  +   L+L  +   E E    I  +
Sbjct: 477 MEESLRQAKQAAEEASRTKSRFVANMSHELRTPMTGVLGMLDLALQSCDETERTDYIETA 536

Query: 57  SMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRV 100
             SA   L+ +                 +        +G    V+   +         ++
Sbjct: 537 QRSARSLLRILNDVLDLAKVEAGKFSLDSKPFSLRTCIGQAVDVVMPEVRRKGLELALQI 596

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKING 155
           +       +       ++L NL   A     RG                 E  FS++  G
Sbjct: 597 EDHLPDHVLGDQVRLRQVLTNLIGNAVKFTERGSVRIALRAGGRSPQGPMEFRFSVRDTG 656

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 ++    V  +        +     +       +       +  E         S
Sbjct: 657 IGIPQDKRHLLFVSFSQLDDSNTRSYGGTGLGLAISKEIVERMGGSIALEGEKGEGSCFS 716

Query: 211 AL 212
             
Sbjct: 717 FT 718


>gi|225869822|ref|YP_002745769.1| histidine kinase protein [Streptococcus equi subsp. equi 4047]
 gi|225699226|emb|CAW92512.1| histidine kinase protein [Streptococcus equi subsp. equi 4047]
          Length = 348

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 22/227 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLK 65
            S    +++ +++ HDI +P+ +I  ++E + +       E   +  I   +      ++
Sbjct: 115 ESEHEKSMMIAQLSHDIKTPLTSIQATVEGILDGVIPREEERHYLNTISRQTNRLNQLVE 174

Query: 66  FMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            + +                      LI +    Q+  +       ++V+    KI    
Sbjct: 175 ELHMVSLNDQKQDDKQQLQIIYLEKLLIDMLSEFQLTLEQEKRSVHIEVAKEVVKISSRY 234

Query: 114 ER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD 169
           +  ++I+LNL   A         +TI     +      +   G   +  +    F ++  
Sbjct: 235 DALSRIMLNLVSNALKYSKANTALTIHAYQQEQSIRIDVIDQGQGIKKEDLPLIFKRLYR 294

Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      H +       LA +    +  E         S LL 
Sbjct: 295 VEASRNMKTGGHGLGLSIARQLARQLGGDIAVESQLGKGSCFSLLLP 341


>gi|224537361|ref|ZP_03677900.1| hypothetical protein BACCELL_02239 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520986|gb|EEF90091.1| hypothetical protein BACCELL_02239 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 793

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 61/234 (26%), Gaps = 28/234 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLI 53
           MA+N     S ++        + H+I +P+ AI     LL        E   +  ++++I
Sbjct: 561 MAENAELKQSFLN-------NMSHEIRTPLNAIVGFTNLLVGEGGDEIEPDEKKAMLEII 613

Query: 54  RLSSMSAIIRLK------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             ++   +  +                    +  +          + +I+  +     + 
Sbjct: 614 NRNNELLLKLVNDVVEISRLDSGNMDLEIKEWDMATVVKEIYMAYQALIKPSLQFHLALD 673

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV-TISVQDSKNENIFSLKINGNLARF 160
            + +           +++ N    A      G       V     +    ++  G     
Sbjct: 674 ENLSLPVNIDRMRFIQVISNFLGNADKFTRSGSITLGCKVDKKDRKVSVYVQDTGKGIDE 733

Query: 161 PEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E              +    +      ++  +   R+            + +L
Sbjct: 734 KELMMIFDRFYKTDEFEQGSGLGLSICKVIIEKLCGRIEVRSEVGKGSRFTVVL 787


>gi|146340912|ref|YP_001205960.1| putative histidinase kinase-response regulator hybrid protein
           [Bradyrhizobium sp. ORS278]
 gi|146193718|emb|CAL77735.1| putative histidinase kinase-response regulator hybrid protein
           [Bradyrhizobium sp. ORS278]
          Length = 599

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 59/240 (24%), Gaps = 26/240 (10%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIR 54
            K +   L  S  + A+  L   I HD  + +  +    E++ +           +  I 
Sbjct: 210 RKRLNEQLRQSQKMEAVGVLAGGIAHDFNNLLLVMMIYAEMIRDEAATDDPRLSDVLEII 269

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            +        + +           +++ LG +    +  +       +            
Sbjct: 270 RAVDRGRALTQQLLAFSRKQPLRLAVLDLGAVMAETQKMLRRLLPSNIETMAMVEGDCWP 329

Query: 114 ------ERAKILLNLFMVAHASL-----------PRGGKVTISVQDSKNENIFSLKINGN 156
                 +  ++++NL + A  ++            R            +  + S+   G 
Sbjct: 330 VLADRGQIEQVIINLALNARDAMTSGGRLEILVGNRTISRADEAVPPGDYVVMSVIDTGV 389

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +                   +       + ++    +            + LL +
Sbjct: 390 GISPADLELIFDPFFTTKKRGSGTGLGLSTCYGIINQAGGHISAVSKVGEGTTFTVLLPR 449


>gi|159903652|ref|YP_001550996.1| adaptive-response sensory kinase [Prochlorococcus marinus str. MIT
           9211]
 gi|159888828|gb|ABX09042.1| two-component sensor histidine kinase [Prochlorococcus marinus str.
           MIT 9211]
          Length = 370

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 66/229 (28%), Gaps = 20/229 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE------LLDEVGIEDEVMQLIRLS 56
           + +   + S +    L   + H++ +P+ A   +++      +  E   E    +L  + 
Sbjct: 137 ETLSARVESQE---RLLRMVAHELRTPLSAAVLAIQSQELGQINQEKFQEVVKRRLEEIE 193

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEKID 110
            +S  +                S    I    I ++ + ++A    V             
Sbjct: 194 LLSKDLLQVGSTRWEALFNPQKSNLSNITAEVILELEKLWLARGVGVNTDIPSDLPIVFA 253

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF----T 165
             R   ++LLNL   A     +G  V+I++   +      S+   G      E+      
Sbjct: 254 DQRRMRQVLLNLMENALKYSRKGDTVSITMLHRTDQWVQCSICDQGPGIPEDEQQRIFLD 313

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++      S      I       +   +  ++               + 
Sbjct: 314 RVRLPQTSSETPGFGIGLSVCRRIVEVHGGKIWVVSEPGQGACFHFTVP 362


>gi|113969702|ref|YP_733495.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           sp. MR-4]
 gi|113884386|gb|ABI38438.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           sp. MR-4]
          Length = 603

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 67/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + +  L  +  L + I H++  P+ A+ +  +               + +++
Sbjct: 363 LKDTQDELIQAAKLTVIGSLSASINHELNQPLAALRSYAQNTQTFLARNMPDKASDNLKI 422

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSW 104
           I   +      +   +     +   DS   L    +     +  +   Q           
Sbjct: 423 IIELTDRLADIVGQFKSFTRKSQGNDSATDLKGCIKQALTIVQPEIDKQGVELDVLLPEG 482

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEK 163
             +         ++ +N+   A  ++ +  K T     + +++   S++ +G   R  + 
Sbjct: 483 QYQVWGDKVRLQQVFVNIMSNAIVAMQQSSKRTLSIRVNCQDKFCISIQDSGPGVRESQM 542

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S      +       +    + ++     +D   +   +L 
Sbjct: 543 EKIFEPYFTTSERTGLGLGLSISQRIIESMQGQINVANAEDGGAIFHIILP 593


>gi|116748633|ref|YP_845320.1| multi-sensor hybrid histidine kinase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697697|gb|ABK16885.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 912

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 65/244 (26%), Gaps = 31/244 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            + +   L  +  + A+  L   I HD  + +  I    EL    +         +  + 
Sbjct: 527 RRKLEARLRQAQKMEAIGTLAGGIAHDFNNILTPIIGYTELALARMGSAEHAQRDLHQVL 586

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV-----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            ++  A   +  +     +         D    + +  +++   I     V+ +      
Sbjct: 587 KAAQRAKDLVNQILAVSRHDREQERTAGDVSTIVEEALKLLRALIPSTIEVRQNLDPGIA 646

Query: 110 -DLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKI 153
              + +  ++L+NL   A  ++                  G   I   D  +     +  
Sbjct: 647 LVDATQIHQVLINLCTNASHAMNGTGVLDVSLTGVQIGNPGSAHIPDLDPGSYLRLRVAD 706

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G          +I D    +        +    V  +   ++  +          +   
Sbjct: 707 TGPGMDAATL-ERIFDPYFTTKAVGKGSGLGLAVVHGIVKRHRGAVTVRSRLGQGSIFDV 765

Query: 212 LLEK 215
            + K
Sbjct: 766 YIPK 769


>gi|332557563|ref|ZP_08411885.1| sensor histidine kinase [Rhodobacter sphaeroides WS8N]
 gi|332275275|gb|EGJ20590.1| sensor histidine kinase [Rhodobacter sphaeroides WS8N]
          Length = 587

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELL---DEVGIEDEVMQLIRLSSMSAI 61
            S  L AL  + + + H++  P+ A+   L   +LL             Q I        
Sbjct: 357 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQRRRTEEALASFQRIDDLIERMG 416

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKIDLSR 113
              + ++      G     + +          +    +++V              +    
Sbjct: 417 AITRQLKSYARKGGEAFEPVDMRLCVSSALTMMEPQLKIRVVRITRTLPRQPVMVMADRL 476

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +        I +   +      +++ NG+     E    + +   
Sbjct: 477 RLEQVIINLLRNALDATKTVPSPQIDLVLAAGETATLTVRDNGHGI---EDLDNLFEPFY 533

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +       +  +   RL     D    V    L 
Sbjct: 534 TTKKPGEGVGLGLAISSGIVTDLGGRLTARNADGGGAVFEVQLP 577


>gi|329957721|ref|ZP_08298196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
 gi|328522598|gb|EGF49707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides clarus YIT 12056]
          Length = 1348

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 70/229 (30%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            K     ++ M L   +   I H++ +P+  I   ++ + +   +  + + +     +   
Sbjct: 820  KERQKEVNEMKLRFFI--NISHELRTPLTLILAPVQEMMDKVSDRWLHKQLEHVQKNTNR 877

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI------------- 109
             L  +     Y  +   +  L      I   I  D          K              
Sbjct: 878  LLHLVNQLMDYRRAELGVFNLKVRRNPIHKVIEKDFLFYDRLAQRKRIAYNLSSEVEGKE 937

Query: 110  --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      I+ NL   A      G  +T+ ++++  E +  ++  GN     +K  +I
Sbjct: 938  ILCDPNYLELIVNNLLSNAFKYTDEGKSITVVLRETGKELLLQVRDTGNGIPI-DKQAKI 996

Query: 168  VDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   ++  +     I    V  L   +  R+  E  +      S  L 
Sbjct: 997  FERFYQADNEHMGSGIGLSLVQRLVDLHHGRIELESREGEGSAFSIYLP 1045


>gi|301382802|ref|ZP_07231220.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato Max13]
 gi|302134577|ref|ZP_07260567.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 660

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           + +       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 271 LTQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRLSQGRFTEIDRYVAA 330

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 331 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSIGL 390

Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151
                +  ++    LNL + A  ++PRGG++TI   +                      +
Sbjct: 391 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCV 450

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 451 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 509

Query: 210 SALLEK 215
              L +
Sbjct: 510 CLYLPR 515


>gi|300173704|ref|YP_003772870.1| histidine protein kinase sensor protein [Leuconostoc gasicomitatum
           LMG 18811]
 gi|299888083|emb|CBL92051.1| Histidine protein kinase, sensor protein [Leuconostoc gasicomitatum
           LMG 18811]
          Length = 368

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 63/230 (27%), Gaps = 24/230 (10%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMS 59
            L S+ + A     S + H++ +P+  +   ++LL+  G ++  +        +      
Sbjct: 127 RLQSL-IAAQQQFVSDVSHELRTPVAIVKGHMDLLNRWGKDEPDVLNDSIVSSLSEMQRM 185

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------TGEKI 109
             +  + + L       ++++  + ++  ++       K +   +               
Sbjct: 186 ENLINEMLNLTRAEQIPIENVKDITEVGGLVHRVFDNFKMIHPDFIFTFDDDLMQDANVK 245

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
                  +IL+ L   A        ++  ++  + N     ++  G      E       
Sbjct: 246 VRQDHMEQILIILADNAVKYSLDRKEIHFALSQTTNRVEIGIQDFGEGLSSEEAMRVFDR 305

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         + +       L       +  E         +  L 
Sbjct: 306 FYRVDKARSRAKGGNGLGLSIAQRLVEAYGGEITIESALGSGSAFTIRLP 355


>gi|293115447|ref|ZP_05791533.2| alkaline phosphatase synthesis sensor protein PhoR [Butyrivibrio
           crossotus DSM 2876]
 gi|292809740|gb|EFF68945.1| alkaline phosphatase synthesis sensor protein PhoR [Butyrivibrio
           crossotus DSM 2876]
          Length = 465

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 65/236 (27%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           MA  I              + I HD  SP+ +I   LE + +      ++++ + ++   
Sbjct: 223 MAAEINSLNEYQK---KFIANISHDFRSPLTSIKGYLEAMLDGTIPPEMQEKYLGIVISE 279

Query: 57  SMSAIIRLKFMRLAFG------------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +         +                 +         +   +   E      K +    
Sbjct: 280 TERLTKLTNNLLTINNVTDEGMILDISDFDIIATIKKTIETFQGTCEKKKIKFKLIFPDK 339

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                    +  ++L NL   A         + ISV +  ++ + S+K  G         
Sbjct: 340 ELMVSADMSKIQQVLYNLIDNAIKFSNSDSSIIISVTEKGDKALISVKDFGIGIPRESIS 399

Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + + +    +V    D     +    V  +   +   +     +      +  L K
Sbjct: 400 KIWERFYKTDVSRGKDKTGTGLGLSIVKEIITSHNEYIDVVSTEGVGTEFTFALPK 455


>gi|284166041|ref|YP_003404320.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015696|gb|ADB61647.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 535

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 69/237 (29%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLVA-----LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
            + +  ++  ++  +          + HD+  P+  + + L+LL++          +E +
Sbjct: 277 QQELAESVDQLE-ASNERLEQFAYAVSHDLQEPLRMVSSYLQLLEDRYRDELDEDAEEFI 335

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVS 103
                 +      ++ +      T   +         +    +  +       D  + V 
Sbjct: 336 DYAVDGAERMRAMIENLLEYSRVTTRGEPLEPTDAAAVLDNVLTDLEPRIEETDATITVD 395

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPE 162
                I    + A++  NL   A              V+   +E  F++   G     PE
Sbjct: 396 ELPTVIADGDQLAQVFRNLLSNALKYSGDEPPRVHVGVERDGDEWRFAIADQGIGL-DPE 454

Query: 163 KFTQIVDGNVE--STIDSH--DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  QI D      ++ +     I       +   +  ++  +            L +
Sbjct: 455 QSEQIFDVFETAHTSEEGSDSGIGLALCQRIIERHGGKIWVDSEPGEGATFYFTLPR 511


>gi|262164909|ref|ZP_06032647.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223]
 gi|262027289|gb|EEY45956.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio mimicus VM223]
          Length = 857

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLTDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      +K          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKSEFRLKELVCAIDRIYRPLCNDKGIALVVESNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TSATLVRSDQIRINQILFNLLNNAIKFTHQGSIRVALELIEGDPLAQLVIQVMDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L       H       L
Sbjct: 644 EEDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGHGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|271966273|ref|YP_003340469.1| signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
 gi|270509448|gb|ACZ87726.1| Signal transduction histidine kinase-like protein
           [Streptosporangium roseum DSM 43021]
          Length = 486

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 50/236 (21%), Gaps = 39/236 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
             +   H++ +P+ +I    EL        +   E  + ++   +    ++    + LA 
Sbjct: 244 FVADASHELRTPLTSIRGFAELYHHGQDARDPAAERLLRRIEAEAERMGVLVEDMLLLAR 303

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLF 123
                      +       +   A          + +            R   +++ NL 
Sbjct: 304 LDQEPALEPSVVDLHVLAGDVVHAARARDRERPIRLIISDGPVFVRGDERRLHQVIANLV 363

Query: 124 MVAHASL--------------------PRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             A                        P            +   +  ++  G        
Sbjct: 364 GNAIQHTSSGTEIGLTVAPRAVAGVPAPGVVHAGAGPAPHRRAALLEVRDEGQGIDPEHL 423

Query: 164 ---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +      +         +       L   +  R+              LL 
Sbjct: 424 PYLFDRFYRADPDRSRDSGGTGLGLAIAAALVQAHDGRIEVTSTPGRGTTFRVLLP 479


>gi|229058211|ref|ZP_04196599.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
 gi|228720075|gb|EEL71659.1| hypothetical protein bcere0026_13260 [Bacillus cereus AH603]
          Length = 591

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 69/237 (29%), Gaps = 27/237 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           M +          +     + + H++ +P+  +    E + +  ++ +    + +++   
Sbjct: 355 MTEERRL----EKMRQDFIANVSHELRTPMVMLQGYSEAILDDIVQTKEEINEFVQIIYD 410

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKRVQVSWTG 106
            ++                      + G VD    +  I  +        + ++ V +  
Sbjct: 411 ESVRLGKLVNELLDLARMESGHVELHIGEVDIHPFVEKIGRKFQGIAKDKEVQLTVDFQS 470

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +     ++L NL   A      GG VT+ +    +   F ++ +G      + 
Sbjct: 471 PIEQYPFDADRMEQVLTNLIDNAIRHTNAGGHVTLVINTKNSGLTFEVQDSGAGIPEEDI 530

Query: 164 ---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +   T        +       +   +  ++    +     + S  L 
Sbjct: 531 PFLFDRFYKADKARTRGKKVGTGLGLAIAKNIVQGHDGKIFVSSVVGEGTIFSVYLP 587


>gi|225865149|ref|YP_002750527.1| sensor histidine kinase [Bacillus cereus 03BB102]
 gi|225785844|gb|ACO26061.1| sensor histidine kinase [Bacillus cereus 03BB102]
          Length = 457

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 220 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 276

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 277 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 336

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 337 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 396

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 397 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 452


>gi|212710083|ref|ZP_03318211.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
 gi|212687290|gb|EEB46818.1| hypothetical protein PROVALCAL_01136 [Providencia alcalifaciens DSM
           30120]
          Length = 1042

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 62/234 (26%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
           AK +    +     +   + + H+I +P+  I  +LELL+       +   +  +  +S 
Sbjct: 465 AKRLAEEANQAK--SNFLATMSHEIRTPLYGIIGTLELLENTALSPKQKHFIDRMSTTSQ 522

Query: 59  SAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +  +                   S D L  +    Q+ +      K +  +     I 
Sbjct: 523 LLMHLIGDILDISKIEANQIHIQHISFDLLDLIQHTVQLYQGLAQQKKLLLFAIIDPNIY 582

Query: 111 LSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             R        +I  NL   A      G         + N  I  +   G      E+  
Sbjct: 583 AVRIGDAARLQQIFGNLLSNAIKFTHNGKVTVELRNGTNNNIILFVNDTGVGI-SQEQQE 641

Query: 166 QIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +   +      T     +  +    L       +               L 
Sbjct: 642 KLFEPFYQAHSGQHTYGGTGLGLFICAELVKLMGGEISVTSNLTVGSSFQITLP 695


>gi|203288190|ref|YP_002223205.1| sensory transduction histidine kinase, putative [Borrelia
           recurrentis A1]
 gi|201085410|gb|ACH94984.1| sensory transduction histidine kinase, putative [Borrelia
           recurrentis A1]
          Length = 386

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 75/235 (31%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALL--CSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIR 54
                    +  L A       I H+I +P+GAI  +L+LL +   +  +         +
Sbjct: 138 KHKEELFRRAEALAAFTRHARNIAHEIKNPLGAIDINLQLLKKEIDKQNIKSTKTNHYFK 197

Query: 55  LSSMSAIIRL----------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +                   + +++        D +  + ++         +   + +  
Sbjct: 198 IIKEEINRMDKTVTDFLLTVRPIKIMPQKKDISDIIKSVYNLLNPELKNKNIKFILSLKK 257

Query: 105 TGEKIDLSRERAKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARF 160
               +   +   ++++N+   A  +L     +  K+ IS+ +++N    S+K N N    
Sbjct: 258 VSFVLIDEKLIRQVIINIVKNAEEALLESNKKIKKIEISIHENENNIYVSIKDNANGI-T 316

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            E    I      +  +   I       +  E+   +  E  +      +  L K
Sbjct: 317 NETKDDIFKPQFSTKENGSGIGLTISYKIVKEHGGEIFVESKEMKGTSFTITLPK 371


>gi|188583015|ref|YP_001926460.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179346513|gb|ACB81925.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 492

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 69/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS-- 56
           +AK       S  + A+  L   + HD  + +  I  SLEL+     +  +  L R    
Sbjct: 104 LAKTEEALRQSQKMEAVGQLTGGLAHDFNNLLAGISGSLELMQTRMSQGRMGDLDRYMSV 163

Query: 57  --------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                   +      L F R         +    + D+E+++   +     ++V      
Sbjct: 164 AQGAAKRAAALTHRLLAFSRRQTLDPKPANVNRLVADMEELVRRTVGPAIHLEVVGLAGL 223

Query: 109 IDLSRERAKIL---LNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++P                                 +
Sbjct: 224 WPALIDVGQLENALLNLCINARDAMPGGGRITIETANKWIDEAGSRQHDLPPGQYLSVCV 283

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     P+   ++ +    +    +   +    V   A ++  ++           +
Sbjct: 284 TDTGTGM-PPDLVDKVFEPFFTTKPTGEGTGLGLSMVYGFARQSGGQVRIYSEVGQGTTV 342

Query: 210 SALLEK 215
              L +
Sbjct: 343 CLYLPR 348


>gi|116873389|ref|YP_850170.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116742267|emb|CAK21391.1| sensor histidine kinase ResE [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 594

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 356 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 411

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M            +          L  +     V+     V+  +++  
Sbjct: 412 ESLRIGRLVNDMLDLARMEAGFNHMDNQKMPIAPLLEKVIANFDVLAKENFVELGLELET 471

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +    ++R  ++L+NL M A     + G         ++  ++N  + ++  NG+  
Sbjct: 472 PNLEYSYDQDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTIDKTRNNLVITVSDNGSGI 531

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  E +          
Sbjct: 532 AEEDIPYLFERFYKADKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESVLGEGSDFIIT 591

Query: 213 LE 214
           L 
Sbjct: 592 LP 593


>gi|32400384|dbj|BAC78681.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 848 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|32400386|dbj|BAC78682.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 848 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|32400382|dbj|BAC78680.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 848 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|83951580|ref|ZP_00960312.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius nubinhibens ISM]
 gi|83836586|gb|EAP75883.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseovarius nubinhibens ISM]
          Length = 567

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 66/233 (28%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +A        S  L AL  + + + H++  P+ A+   L     LL+    +        
Sbjct: 328 LAVAEQTLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLNRNRPDEALSSFQR 387

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104
           +  LI            + R        V+    L     ++E  +              
Sbjct: 388 IDDLIERMGAITRQLKSYARHGGDQFVPVNLGDSLNSALGLMEPQLRQHHVRITRTLPDR 447

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
               +       ++++NL   A  +     +  I +   +      +++ NG+     + 
Sbjct: 448 PVMVMGDRVRIEQVMINLLRNALDATRGVEEAQIDLLLAAGETATLTVRDNGHGLSDIDN 507

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +    D   +       + ++   RL      D   V    L 
Sbjct: 508 ---LFEPFYTTKAPGDGVGLGLAISSGIVNDLGGRLTARNAADGGAVFEVQLP 557


>gi|331015863|gb|EGH95919.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 660

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 76/246 (30%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           + +       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 271 LTQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRLSQGRFTEIDRYVAA 330

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 331 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSIGL 390

Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151
                +  ++    LNL + A  ++PRGG++TI   +                      +
Sbjct: 391 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQARDLSPGQYLSLCV 450

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 451 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 509

Query: 210 SALLEK 215
              L +
Sbjct: 510 CLYLPR 515


>gi|309789879|ref|ZP_07684457.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308228086|gb|EFO81736.1| PAS/PAC sensor signal transduction histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 385

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 59/224 (26%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
           L + + H++ +P+ ++   +E +           +++ +     S    +  +       
Sbjct: 160 LVANVSHELRTPLASLKLLVETVQSSPPPDVAHRMLEQMAQEIDSVTQLVDELHDLAQIE 219

Query: 75  G--------SVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNL 122
                     +     +    + +                +     +       +ILLNL
Sbjct: 220 SGRVSLKLAPLPIGPVIERALERMRPQADRKGLTLGAEVPNGAQAVLMDPNRVGQILLNL 279

Query: 123 FMVAHASLPRGGKVTISVQ-------DSKNENIFSLKINGNLARFPE---KFTQIV--DG 170
              A      GG V I V+        +    + S+   G      +    F +    D 
Sbjct: 280 LHNAIKFTAEGGSVQIRVRLVGEDAGQAGPWLLVSVCDTGVGIPATDLPRIFERFYKVDR 339

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       L   +  RL  E ++      +  L 
Sbjct: 340 ARTRHAGGTGLGLAIAKHLVEGHGGRLWAESVEGRGSTFAFTLP 383


>gi|307592105|ref|YP_003899696.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985750|gb|ADN17630.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 816

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 64/231 (27%), Gaps = 22/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-- 63
                +  +     + + H++ +P+ A+    +LL +   ED ++           +   
Sbjct: 430 QQAQQANQIKDEFLAIVSHELRNPLNAMLGWSQLLHKREFEDTMVNQAITIIERNALLQK 489

Query: 64  -------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                           + ++      +  +  + D  +      A++    +  + + + 
Sbjct: 490 KLIEDLLDISRIIQNRLHISREPVYLIPLIDTVIDTLRPNIKAKAIEISSNLDTSTKPVF 549

Query: 111 -LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
             +    +I+ NL   A      GGK+ + +    +    ++   G        P  F +
Sbjct: 550 GDAYRLEQIVGNLLSNAIKFTSTGGKINVQLSQEGSLAKITVADTGQGISPEFLPFIFER 609

Query: 167 IVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
                 +   +     +    V  L   +   +                L 
Sbjct: 610 FRQADPSKTRSQSGLGLGLAIVRHLVELHGGSVYAASPGVGKGATFIVQLP 660


>gi|221638539|ref|YP_002524801.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221159320|gb|ACM00300.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 587

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELL---DEVGIEDEVMQLIRLSSMSAI 61
            S  L AL  + + + H++  P+ A+   L   +LL             Q I        
Sbjct: 357 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQRRRTEEALASFQRIDDLIERMG 416

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKIDLSR 113
              + ++      G     + +          +    +++V              +    
Sbjct: 417 AITRQLKSYARKGGEAFEPVDMRLCVSSALTMMEPQLKIRVVRITRALPRQPVMVMADRL 476

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +        I +   +      +++ NG+     E    + +   
Sbjct: 477 RLEQVIINLLRNALDATKTVPSPQIDLVLAAGETATLTVRDNGHGI---EDLDNLFEPFY 533

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +       +  +   RL     D    V    L 
Sbjct: 534 TTKKPGEGVGLGLAISSGIVTDLGGRLTARNADGGGAVFEVQLP 577


>gi|219847340|ref|YP_002461773.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541599|gb|ACL23337.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 449

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 62/235 (26%), Gaps = 25/235 (10%)

Query: 5   ICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQL 52
             FN  + +L A       + + I H++ +P+  I  +L  + +           ++ + 
Sbjct: 213 EAFNAMATELAAANQQRRQMIADIAHELRTPLTVIQGNLRAILDDVYPLSREEVGKIYEA 272

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSW 104
                       +      G        + L            ++             S 
Sbjct: 273 TVGLRRLVDDLRELSLADTGQLTLHRQPLDLNQLLAREAALFRELATVQGVALHVTLASE 332

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
               I      A+++ NL   A    P GG++ ++    +   + S+   G+     +  
Sbjct: 333 IPPVIADGERIAQVVRNLLSNALRYTPAGGQIMVTSTAHEQGVLVSVIDTGSGIEPTDIP 392

Query: 164 --FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           +       L   +  ++  E            L 
Sbjct: 393 HIFERFYRSDHGRSRAKGGSGLGLAIAERLIALHGGQIGVESEVGKGSRFWFWLP 447


>gi|220909777|ref|YP_002485088.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219866388|gb|ACL46727.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1548

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 57/228 (25%), Gaps = 33/228 (14%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM------------ 67
            + + H++ SP+  I    +LL     +    Q    +          +            
Sbjct: 1170 AILSHELRSPLNPILGWSQLLQNRPFDAATTQQALTTIERNARLQIQLIDDLLDVARILR 1229

Query: 68   ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                +       V  +    D  +      ++   + ++  G     +    +I+ NL  
Sbjct: 1230 GKLNMETSPVDLVAVIEAAIDTVKTAALAKSIHLELDLAQIGPVCGDATRLQQIVWNLLS 1289

Query: 125  VAHASLPRGGKV------------TISVQDSKNENIFSLKINGNLARFPEKFT-----QI 167
             A    P+GG+V            T     S +    ++   G               + 
Sbjct: 1290 NAIKFTPQGGRVEVRLGEVEGEAGTDQTVPSPHFAKLTVTDTGKGISPDFLPHIFESFRQ 1349

Query: 168  VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             D +         +    V  L   +   +  +   +      +    
Sbjct: 1350 EDASTTRKYGGLGLGLAIVRSLVEAHGGTIWADSAGEGQGATFTVCFP 1397


>gi|32400390|dbj|BAC78684.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 848 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|32400380|dbj|BAC78679.1| two-component histidine kinase [Cochliobolus heterostrophus]
          Length = 1329

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 848 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|163845709|ref|YP_001633753.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|163666998|gb|ABY33364.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
          Length = 350

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 70/238 (29%), Gaps = 24/238 (10%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRL 55
           A++      +++ +      +   + H++ +P+  I   LE L +       +    ++ 
Sbjct: 111 AESFNQMAEALEQIEQRRITMIGNVAHELRTPLAGIEGYLEGLIDGVLPNTADTFLDMKQ 170

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   +  ++          +L         +   +    + QV  +  ++  + ++
Sbjct: 171 EVRRLRRLVDDLQTLSRVEAGQIALHFTTFDVNDVIRRVVAQIQPQVLDSCLQVQFAPDQ 230

Query: 116 A------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RF 160
                        +ILLNL   A    P GG +T+  + + +     ++  G        
Sbjct: 231 QPILVHADADRVAQILLNLLGNAVRYTPEGGCITVRSELNNDNVQVIVEDTGIGISAEHL 290

Query: 161 PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
           P  F +      +   T     I       LA      +             +  L +
Sbjct: 291 PFIFERFYRADPSRARTSGGSGIGLTIARHLAWAMGGDISAASAGIGKGSTFTLTLPR 348


>gi|254490271|ref|ZP_05103460.1| phosphate regulon sensor kinase PhoR [Methylophaga thiooxidans
           DMS010]
 gi|224464404|gb|EEF80664.1| phosphate regulon sensor kinase PhoR [Methylophaga thiooxydans
           DMS010]
          Length = 429

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+++   +    +     + + H++ +P+  +   LE        ++    +      + 
Sbjct: 188 ARDVTQTIKLQRMRRDFVANVSHELKTPLTVLRGYLEAFSADSDSEQWRAALPAMRQQSE 247

Query: 62  IRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                ++                         L  + D    +E F      + +     
Sbjct: 248 RMHIMIKDLLALSQLETGEKALRRVPADVATLLQSIIDDAHNVEHFRDHRFSLNLETDKW 307

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            I    E    + NL   A    P   ++ I  +   +    +++ NG+         ++
Sbjct: 308 LICDIDEVRSAVSNLIFNAVKYTPAASQIDIFWRQEGDNFCIAVEDNGDGIAEHHL-ERL 366

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +          S      +    V  +   +   L       H    S    
Sbjct: 367 TERFYRVDKGRSSDAGGTGLGLAIVKHVLQRHGANLNITSEIGHGSCFSCCFP 419


>gi|253702681|ref|YP_003023870.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
 gi|251777531|gb|ACT20112.1| GAF sensor signal transduction histidine kinase [Geobacter sp. M21]
          Length = 766

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 59/233 (25%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           +++     L    L A+  + + I H++  P+ +I      L +    E        L  
Sbjct: 533 LSEAQEHLLQKERLAAIGEMAAGIAHELKGPLVSIGGFAGRLAKKLPQETSEWAHADLIV 592

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKI 109
              +     +     ++          D+          V          V   +  +K+
Sbjct: 593 REVLRLEGILSEILLFSKKTTICYTRCDLSEIVKESLAVVTPPLEEKRISVNAKFPRQKL 652

Query: 110 DLSRERAKILLNLFMVAHASLPRG-------GKVTISVQDSKNENIFSLKINGNLARFPE 162
            L  +  ++      +   +L           +V  +  D K      +   G      E
Sbjct: 653 VLLGDGQQLKQVFINIILNALDAMGTGGTLNIQVLAAEMDGKEAVQVKISDTGGGIPL-E 711

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               I      +      +       +   +  ++         V    +L K
Sbjct: 712 SLHSIFTPFFTTKGSGTGLGLPIANRIITNHGGKIQVTNHPGLGVEFRVILPK 764


>gi|254226171|ref|ZP_04919766.1| sensor histidine kinase LuxQ [Vibrio cholerae V51]
 gi|125621273|gb|EAZ49612.1| sensor histidine kinase LuxQ [Vibrio cholerae V51]
          Length = 857

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 62/241 (25%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E   ++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRXKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|108763456|ref|YP_632747.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108467336|gb|ABF92521.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 712

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 59/230 (25%), Gaps = 22/230 (9%)

Query: 7   FNLSSMDLV--ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSA 60
             L +  L    +L + I H+I +P+G +    E     L     +   +  I       
Sbjct: 471 QLLRAEKLATVGVLAAGIAHEIGTPLGIVRGRAEYVQEKLGREHPQAAGLGTIVGQIDRV 530

Query: 61  II----RLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRER 115
                  L F RL      +V     +  + ++   +      +++V+       ++ + 
Sbjct: 531 SRTLRQLLDFSRLRPADAQTVPLEPLVHSVRELLWMEAERRRLKLEVTVASPVPAVAADP 590

Query: 116 AKILLNLFMVAHASLPRG----------GKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +    L  +   +                 T     +       ++ NG          
Sbjct: 591 DQFQQVLINLVLNACDACGAGGRVRLSASMDTGDTPGAWGMVRVDVEDNGCGIAPRHVHQ 650

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +    V  +   +  R+  +   +    ++    
Sbjct: 651 VFDPFFTTKKRGQGTGLGLTMVAHIVRNHGGRIELDSAPERGTRVTVRWP 700


>gi|37930220|gb|AAP76280.1| GacS [Pseudomonas sp. PCL1171]
          Length = 917

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSEMSPRQLDYLGTIEKSA 330

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++       +      V    
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ + +     +   S++  G     
Sbjct: 391 PLALVGDPLRLKQILTNLVSNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLSN 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|83815808|ref|YP_445757.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|83757202|gb|ABC45315.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
          Length = 904

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQ 51
           + +       +  L + L + + H+I +P+ +I    E          L +        +
Sbjct: 661 LREAKQEAEEASQLKSSLLANMSHEIRTPLTSIIGFAEATNAEAKELDLPDDSPLPNYAE 720

Query: 52  LIRLSSMSA-IIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQV 102
           LI  S           + L+    G ++                E++       +  +Q+
Sbjct: 721 LIEQSGRRLLETLEGVLNLSKLEAGEMELEARPVDLVEEAEAVAEELRPRAEEKEVLLQL 780

Query: 103 SWTGEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +   + +  NL   A      GG+V +     +    F ++  G      
Sbjct: 781 ETEAAWAEADKGGVQILARNLLSNAVKYTEAGGRVRLRTYREEGAVAFEVEDTGIGMDPE 840

Query: 162 -----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +  +              I          + +  +  E        ++  L K
Sbjct: 841 TAEGLFEPFRQASEGFSREYQGTGIGLAVTKETTKQMEGSIDVETEKGEGTRITVWLPK 899


>gi|116621995|ref|YP_824151.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116225157|gb|ABJ83866.1| multi-sensor signal transduction histidine kinase [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 665

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 63/227 (27%), Gaps = 14/227 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +        ++ +  L   + HD  + +  I     +L E    D+    +       
Sbjct: 437 MLEAQFRQAQELESLGRLAGGVAHDFNNLLTVITGYSSVLLEKKSPDDPAYPVLCEIRRT 496

Query: 61  --------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                      L F R        VD    +   E ++   +  +  +  +       + 
Sbjct: 497 AEKGASLTRSLLAFSRRQAPRPEPVDLTALIAVDEPLLLRLLNENIHLVTNLQPSLNFVQ 556

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
            +  +I   LF     A  ++P GG +TI+     +     +   G      +    +  
Sbjct: 557 ADPGQIRQVLFNLVVNARDAMPHGGILTIATSSDGSNVQLVISDTGVGM-TEDVRRHLFR 615

Query: 170 GNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +  +  +       +  +N  ++  +            L 
Sbjct: 616 PFFRTDEECTAAGLGMATTYRIIRQNGGQIEVDSSPGGGARFRIQLP 662


>gi|328952039|ref|YP_004369373.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452363|gb|AEB08192.1| multi-sensor signal transduction histidine kinase [Desulfobacca
           acetoxidans DSM 11109]
          Length = 774

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 69/237 (29%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            K +   L +   L ++  L + + H+I +PI  I    E+L E   +   +        
Sbjct: 516 RKTMEDRLINMEKLASIGTLAAGVAHEINNPISVILGFSEILLEQTEQMPDLHETLKIIE 575

Query: 59  SA--------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----IAVDKRVQVSWTG 106
                        + F R         D    L  + QV+++         +        
Sbjct: 576 EEGLKCKKIVENLMTFARTPERIEIVTDINNTLDKMIQVVKNTLLTKKIRLETNFQPGLP 635

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPEKF 164
           +     +E  ++ +NL   A A++  GG  KV  ++   + + +      G      ++ 
Sbjct: 636 QVKGDPQELQQVFINLINNAVAAMKGGGLLKVKTALTHDRQKVMIEFSDTGRGIPKKDQP 695

Query: 165 TQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLL-----PEIIDD-HNVVLSALLE 214
                      + +   +       +  +    +       E     H    +  L 
Sbjct: 696 KIFDPFFTTKKVGEGTGLGLSMCYGIITKFGGNISFVSYPVEDYPGKHGTSFTVQLP 752


>gi|330806959|ref|YP_004351421.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375067|gb|AEA66417.1| Putative histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 437

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 9/220 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           MA+++       +L   + + + HD+ +P+  +  SLEL+ +   + DE+++ I      
Sbjct: 211 MAEDVEQAGREREL---MLAGVSHDLRTPLTRLRLSLELMGEHTDLTDEMVRDIEDMDAI 267

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L F+R     +     L  L        +       +++              ++L
Sbjct: 268 LDQFLAFIRDGRDESVEEVDLSELVREVAAPYNQNDEKVHLRLEPIQPFPLRRVSMKRLL 327

Query: 120 LNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
            NL   A             +S   S    + S+   G      E    F     G+   
Sbjct: 328 NNLIGNALNHAGTGVEVAAYVSGDTSAPYVVLSVMDRGAGIDPSELEAIFNPFTRGDRAR 387

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +A  +   +         +     L 
Sbjct: 388 GGKGTGLGLAIVKRIASMHGGNVELRNRVGGGLEARVRLP 427


>gi|327183274|gb|AEA31721.1| histidine kinase [Lactobacillus amylovorus GRL 1118]
          Length = 483

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + ++     +         +   H++ +P+  I+  LE L         + + + L++  
Sbjct: 240 LKRSNEEVKAQEKRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKSIALMQRE 299

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I                + L      +   L  L        +    +  V     
Sbjct: 300 TKRLIRLVNENLDYEKIRNNQINLIKTNFNATPILQDLKSQLSQNAEKANDELEVIAPDD 359

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
                      ++++NL   A      G       +        S+K NG      +   
Sbjct: 360 LPIYADRDRFTQVMVNLVQNAIQFTHDGKIEIKGERMVHATV-LSVKDNGIGMSKDQIKY 418

Query: 164 -FTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            F +    +            +    V  L  ++  ++  E         + +
Sbjct: 419 IFERFFKADPSRARMGTGESGLGLAIVSSLIKQHGGKVTVESEPGKGSTFTVV 471


>gi|325109823|ref|YP_004270891.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
 gi|324970091|gb|ADY60869.1| multi-sensor hybrid histidine kinase [Planctomyces brasiliensis DSM
            5305]
          Length = 1194

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 71/242 (29%), Gaps = 28/242 (11%)

Query: 1    MAKNICFNLSSMDLVALL----------CSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
            +A      + +  L + L           + + H++ +P+  I + L+LL       EV+
Sbjct: 800  LAHRAAVAIDNARLYSDLKDADRRKDEFLAMLAHELRNPLAPIRSGLDLLRIGEQRPEVL 859

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKR--- 99
            +L+       +  +  +                 V+    +      + D      +   
Sbjct: 860  ELMNNQLQHLVRLVDDLLDVSRILRGKVELRKEQVELRELITRTVDAVNDQFTSRNQELT 919

Query: 100  -VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                         S   ++++ NL   A    P  GKV+IS++ ++     S++ +G   
Sbjct: 920  VRLPDAACWLNGDSVRLSQVIHNLLSNASKYTPPDGKVSISLERTERFLRISVRDSGIGI 979

Query: 159  RFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSAL 212
                           + +++ +     I    V  L   +   +                
Sbjct: 980  DSKLLPHVFELFTQAERSIDRSQGGLGIGLTVVKSLIELHGGTVSARSKGKGKGSEFRIR 1039

Query: 213  LE 214
            L 
Sbjct: 1040 LP 1041


>gi|303245802|ref|ZP_07332085.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
 gi|302493065|gb|EFL52930.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio fructosovorans JJ]
          Length = 585

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 74/231 (32%), Gaps = 26/231 (11%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIH---NSL-ELLDEVGIE------------DEVM 50
           + +  L ++  L + I H+I +P+  +      + ++L +   +            D++ 
Sbjct: 330 IEAGKLASVGELAAGIAHEINNPVAIMMEEAGWVTDILADDDHDTPENMAEMRRALDQIR 389

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKI 109
                        L F R        +D    + ++ ++  +    V+ R++        
Sbjct: 390 LQGTRCKEITHKLLSFARKTDERIKELDLNALVAEMAELSDKRARYVNVRIKTDLAENLP 449

Query: 110 DL---SRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +     E  +++LNL   A  ++ + G  +T++ + + +     +   G+         
Sbjct: 450 HVAGSPSELQQLVLNLVNNALDAMEKNGGDLTLATRLAGDHVELVVSDTGHGM-PKAVAA 508

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +        +       +  +    +  E   +        L 
Sbjct: 509 RIFEPFFTTKAVGKGTGLGLSICYGIVKKLGGEITVESAPEQGATFRISLP 559


>gi|292494081|ref|YP_003533223.1| HTR-like protein [Haloferax volcanii DS2]
 gi|291369203|gb|ADE01433.1| HTR-like protein [Haloferax volcanii DS2]
          Length = 597

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 57/213 (26%), Gaps = 8/213 (3%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMS 59
            +       +  L +   S + HD+ +P+     ++EL  E     +             
Sbjct: 382 EREQQLQRQNERL-SEFASVVSHDLRNPLNVAAGNVELAREDHESDQLATAARALARIDD 440

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
            I  L  +       G  + +     +    E     D  +Q   T   +       +++
Sbjct: 441 LIDDLLTLARKGDNVGEREPVSLGTLVTDCWETIETGDAELQTDLTATVVADRSRLQQLI 500

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
            NL   +      G  VT+          F ++ +G      ++   +      ++    
Sbjct: 501 ENLVRNSIEHGGDGVVVTVGELPDG----FYVEDDGVGI-AADRRDSVFQAGQTTSRTGT 555

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                 V  +A  +   +     D         
Sbjct: 556 GFGLAIVKQVAEAHGWTVSVTESDGGGARFEIT 588


>gi|288959269|ref|YP_003449610.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911577|dbj|BAI73066.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 1300

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 62/245 (25%), Gaps = 35/245 (14%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     +    L A   SR        + H+I +P+ AI   + LL +  +       +
Sbjct: 472 RKRAEAAMQRARLAAEAASRAKSEFLANMSHEIRTPMNAILGLIHLLQQTELTGRQADYV 531

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVD----- 97
           +   +SA   L  +     ++                   L  +  ++            
Sbjct: 532 QKVRVSAQSLLGILNDILDFSKVEAGKLELERADFRLDDLLQTLAVIVGSAAQEKDIDVL 591

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKI 153
             V      E +       +IL+NL   A      G  V         D      FS++ 
Sbjct: 592 FSVAPDVPLELVGDPLRLQQILINLAGNAIKFTETGEVVVSVRLRTLADDGAVLDFSVRD 651

Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G     PE+  ++ +                 +       L       +  E       
Sbjct: 652 TGIGI-APEQRERLFEAFSQGDSSTTRRFGGTGLGLAICARLVRLMNGAMDVESEPGKGS 710

Query: 208 VLSAL 212
           V    
Sbjct: 711 VFRFR 715


>gi|229160507|ref|ZP_04288502.1| hypothetical protein bcere0009_12990 [Bacillus cereus R309803]
 gi|228622917|gb|EEK79748.1| hypothetical protein bcere0009_12990 [Bacillus cereus R309803]
          Length = 423

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 58/226 (25%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L E      +D    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQESVSSSNKDLFKNLLIPELDRA 245

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---------- 110
              +                  +    +     +   +    + + +             
Sbjct: 246 NSIITKFLAISKTREFTREPFSINTFLREYIQQLLASEVFLHNISIDYNFSTELDGVLVN 305

Query: 111 -LSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   +   + IS     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAVDAQGEKPLSIQISSYRLDNFVRITFTDNGTGI-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      +     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMASNQN-GTTFTISIP 409


>gi|198284600|ref|YP_002220921.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218667969|ref|YP_002427270.1| nitrogen regulation protein NR(II) [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198249121|gb|ACH84714.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Acidithiobacillus ferrooxidans ATCC 53993]
 gi|218520182|gb|ACK80768.1| nitrogen regulation protein NR(II) [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 361

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 67/218 (30%), Gaps = 20/218 (9%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
              +   + H+I +P+G +  + +LLD      E+    R+           +    G  
Sbjct: 137 AQEMLRGLAHEIKNPLGGLRGAAQLLDRELQRPELKDYTRVILHEVDRLHHLVDRLQGPR 196

Query: 75  GS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---ILLNLFMVA 126
                  V+    L  + +++   +     V+  +     DL  ++ +   + LNL   A
Sbjct: 197 SRPVFAEVNIHQVLEHVRRLLNAELPTGIAVRFDYDPSIPDLMADQEQLVQVFLNLMRNA 256

Query: 127 HASLPRG----------GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
             +L R             VT+     +      +  NG     P+   +I    V S  
Sbjct: 257 QQALDRHGAILIRTRVERYVTLLHHKFRLALRVDVVDNGPGI-SPDLLPRIFLPLVTSRA 315

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +    V  L   +   +          V S  L 
Sbjct: 316 EGMGMGLAIVQGLVRGHGGVVHCHSQPGE-TVFSVSLP 352


>gi|149925352|ref|ZP_01913616.1| hypothetical tryptophan-rich sensor protein [Limnobacter sp.
           MED105]
 gi|149825469|gb|EDM84677.1| hypothetical tryptophan-rich sensor protein [Limnobacter sp.
           MED105]
          Length = 752

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 56/239 (23%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +    + S     +   + + H+I +P+ AI     LL +   + +  + ++    ++ 
Sbjct: 369 QQRKRESASKEK--SQFLANMSHEIRTPLNAILGFNSLLGDQVRDPQSKEYVKQVREASE 426

Query: 62  IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGEK- 108
             L  +     ++              D    +    ++           +++       
Sbjct: 427 QLLGMVEDVLSFSQIEAGSIKIESVEFDLHERVRRTLRLFTAKAQHKGLDLELEIDAMTP 486

Query: 109 ---IDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      ++L NL   A         R       +          +   G      
Sbjct: 487 LLVNGDPARYGQVLSNLLNNAIKFSDSGVVRVKVQADRLDTQGAVIRTEVHDQGIGFDVS 546

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E F ++                   +       L       L    +     V    L+
Sbjct: 547 E-FERLTRPFEQADNTATRRFGGSGLGLAICKRLTELMGGELFVASVPQAGSVFGFTLQ 604


>gi|89896828|ref|YP_520315.1| hypothetical protein DSY4082 [Desulfitobacterium hafniense Y51]
 gi|89336276|dbj|BAE85871.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 560

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 65/249 (26%), Gaps = 37/249 (14%)

Query: 4   NICFNLSSMDLVA-------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
           N    +   +L A                + + H++ +P+ ++    +LL +   ++   
Sbjct: 299 NEDLRIKQDELEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQ 358

Query: 51  QLIR------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAV 96
           +          S     +    + LA    G ++  +   D+  V+              
Sbjct: 359 ERQNLKYIKANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKK 418

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSL 151
               ++S   E   L  +  K+   +  +   ++            +      N  +  +
Sbjct: 419 GINWEISLDPEVSLLRADPEKLRRVIENLVGNAIKFTPPEGRVEIQVKNAPRDNWLMIRV 478

Query: 152 KINGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G      E+            +         +       L   +K  L  E   +  
Sbjct: 479 IDTGIGIPPEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVTLHKGELWVESELNKG 538

Query: 207 VVLSALLEK 215
                LL K
Sbjct: 539 STFVVLLPK 547


>gi|114563673|ref|YP_751186.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
 gi|114334966|gb|ABI72348.1| multi-sensor hybrid histidine kinase [Shewanella frigidimarina
           NCIMB 400]
          Length = 1132

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 58/239 (24%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++       +  A       + + H+I +P+ AI    ++L +  +  E  + +R  
Sbjct: 541 MEQSLLIAKDKAEQAASARSAFLANMSHEIRTPMNAIIGFSDILLDDSLPAEQQKHLRTI 600

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGL----------------GDIEQVIEDFIAVDKRV 100
           + SA   L  +               L                    Q     + ++  V
Sbjct: 601 NQSAKSLLHLLNDVLDSAKLDKGKFDLELRDFSVIEEIDSVVSTLWLQASSKGLFLNVNV 660

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A      GG              F++   G     
Sbjct: 661 SADVAISYHGAPDRIRQVLTNLIGNAIKFTAEGGVSIDVSVKPSGCIEFAINDTGIGMTP 720

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           D ++        +       L      ++  +            L 
Sbjct: 721 EQLALVFDAFAQADASMNRRFGGTGLGTTISKQLVELMGGKITAKSTFGQGSCFGFTLP 779


>gi|323138197|ref|ZP_08073269.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
 gi|322396449|gb|EFX98978.1| multi-sensor hybrid histidine kinase [Methylocystis sp. ATCC 49242]
          Length = 816

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
            K       S  + A+  L   I HD  + + AI    +LL             ++ I+ 
Sbjct: 431 RKLQEEFAQSQKMNAVGQLAGGIAHDFNNMLTAIIGYSDLLLSSHRPTDPAFRDIRQIKE 490

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113
           ++  A    + +            ++ L D    ++  +      +              
Sbjct: 491 TANRAAGLTRQLLAFSRRQTLRPQVLQLSDALSELQILLRRVVGEKNELDLRHGRDLWFV 550

Query: 114 -----ERAKILLNLFMVAHASLP----------------RGGKVTISVQDSKNENIFSLK 152
                +  ++++NL + A  ++P                           S +  +  ++
Sbjct: 551 KADITQFEQVIINLVVNARDAMPETGGRVQIRTRNAPKADCAGFNEPELPSADYVLIEVE 610

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            +G+    PE   +I +    +        +    V  +  ++   +  +       +  
Sbjct: 611 DSGSGI-PPEVKEKIFEPFFTTKEVGKGTGLGLSTVFGIIKQSGGFIFVDSEVGRGTIFR 669

Query: 211 ALLEK 215
             L +
Sbjct: 670 IFLPR 674


>gi|331681793|ref|ZP_08382426.1| phosphate regulon sensor kinase PhoR [Escherichia coli H299]
 gi|331080995|gb|EGI52160.1| phosphate regulon sensor kinase PhoR [Escherichia coli H299]
          Length = 431

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLHIESTVGKGTRFSFVIP 422


>gi|316932053|ref|YP_004107035.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315599767|gb|ADU42302.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 911

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 68/243 (27%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------Q 51
            ++      +  + A+  L   + HD+ + +  I   +E++ +   +   +        Q
Sbjct: 521 KESERQLRQAQKMQAIGQLTGGVAHDLNNILTVITGGIEIIADGVADRPALKDVAAMIDQ 580

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +S      L F R       S+D    + D  +++   +     + V    +    
Sbjct: 581 ATIRASDLTHSLLSFSRKQPLQPRSIDVNALMLDTVKLLRPTLGAGIEIDVEPAPDLRPA 640

Query: 112 SRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKI 153
             + +++   L      A  ++   GK                      +    + ++  
Sbjct: 641 LADPSQLGSALINLAINARDAMRGNGKLLLETGNVDLDQAYAAQHDEVSAGRYVMLAVSD 700

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G          ++ +    +    +   +    V     ++   +     + H   +  
Sbjct: 701 TGCGIPAA-IRDRVFEPFFTTKAVGEGTGLGLSMVYGFVKQSGGHIELYSEEGHGTTIRL 759

Query: 212 LLE 214
            L 
Sbjct: 760 YLP 762


>gi|264678130|ref|YP_003278037.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
 gi|262208643|gb|ACY32741.1| multi-sensor signal transduction histidine kinase [Comamonas
           testosteroni CNB-2]
          Length = 841

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/235 (7%), Positives = 52/235 (22%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----SS 57
            +       +  + +   + + H++ +P+ +I    EL          +  +      + 
Sbjct: 595 REARDAAEEAFRVKSEFVANMSHELRTPLQSIIGFSELGQLRSRATPKLGEMFYDIHAAG 654

Query: 58  MSAIIRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +  +  +         V                   ++E ++       +       
Sbjct: 655 QRMLALVNDLLDVAKLESPVGSIHTEKVDLRGLIRPVARELEPLLHQKQIDLRLRLEDAP 714

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKF 164
                      +++ N+   A       G++ +                 G      E  
Sbjct: 715 LIAKADPVRFQQVIRNMLANAIKFSLPHGRIDVEGHFDGQGNICVDFLDQGPGVPTQEL- 773

Query: 165 TQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I    V+S           +       +       +      D   V    L 
Sbjct: 774 DKIFQPFVQSSKTKDGSGGTGLGLAICRKIIDAMDGTITAANRPDGGAVFRITLP 828


>gi|223984504|ref|ZP_03634636.1| hypothetical protein HOLDEFILI_01931 [Holdemania filiformis DSM
           12042]
 gi|223963490|gb|EEF67870.1| hypothetical protein HOLDEFILI_01931 [Holdemania filiformis DSM
           12042]
          Length = 486

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 55/214 (25%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           L + + HD+ +P+  I    E++ +       E +Q+I   +      +  +        
Sbjct: 259 LIANVSHDLRTPLTMISGYGEMMRDLPGENTPENVQVIIDEAHRLSNLVNDLLDLSKLQE 318

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  +    +        D + Q + +           ++L N   
Sbjct: 319 NKIELHIQDFDLTQLIQTVLYRYEKFMTQDGFDIQFQPAESVRVNADPDRLGQVLYNFIN 378

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID--SH 179
            A        ++ I  + + N     ++ +G           + +    +          
Sbjct: 379 NAINYSLDDKRIVIRQRINGNRVRVEVEDHGEGISEDKLNYIWDRYYKVDKTHKRSSAGS 438

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            I    V  +   +  +           V    L
Sbjct: 439 GIGLAIVREILELHHAQYGVRSEVGQGSVFWFEL 472


>gi|169795679|ref|YP_001713472.1| sensory kinase (soluble) in two-component regulatory system
           [Acinetobacter baumannii AYE]
 gi|184158420|ref|YP_001846759.1| Signal transduction histidine kinase [Acinetobacter baumannii
           ACICU]
 gi|213158376|ref|YP_002319674.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Acinetobacter baumannii AB0057]
 gi|215483165|ref|YP_002325372.1| Nitrogen regulation protein ntrB [Acinetobacter baumannii
           AB307-0294]
 gi|239501619|ref|ZP_04660929.1| Nitrogen regulation protein ntrB [Acinetobacter baumannii AB900]
 gi|260554741|ref|ZP_05826962.1| two-component system response regulatory system sensory kinase
           [Acinetobacter baumannii ATCC 19606]
 gi|301346285|ref|ZP_07227026.1| Nitrogen regulation protein ntrB [Acinetobacter baumannii AB056]
 gi|301512088|ref|ZP_07237325.1| Nitrogen regulation protein ntrB [Acinetobacter baumannii AB058]
 gi|301595688|ref|ZP_07240696.1| Nitrogen regulation protein ntrB [Acinetobacter baumannii AB059]
 gi|332852497|ref|ZP_08434236.1| putative nitrogen regulation protein NR [Acinetobacter baumannii
           6013150]
 gi|332871299|ref|ZP_08439848.1| putative nitrogen regulation protein NR [Acinetobacter baumannii
           6013113]
 gi|332873912|ref|ZP_08441852.1| putative nitrogen regulation protein NR [Acinetobacter baumannii
           6014059]
 gi|169148606|emb|CAM86472.1| sensory kinase (soluble) in two-component regulatory system
           [Acinetobacter baumannii AYE]
 gi|183210014|gb|ACC57412.1| Signal transduction histidine kinase, nitrogen specific
           [Acinetobacter baumannii ACICU]
 gi|193077569|gb|ABO12404.2| two-component regulatory system sensory kinase [Acinetobacter
           baumannii ATCC 17978]
 gi|213057536|gb|ACJ42438.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Acinetobacter baumannii AB0057]
 gi|213988611|gb|ACJ58910.1| Nitrogen regulation protein ntrB [Acinetobacter baumannii
           AB307-0294]
 gi|260411283|gb|EEX04580.1| two-component system response regulatory system sensory kinase
           [Acinetobacter baumannii ATCC 19606]
 gi|322508745|gb|ADX04199.1| glnL [Acinetobacter baumannii 1656-2]
 gi|323518349|gb|ADX92730.1| Signal transduction histidine kinase, nitrogen specific
           [Acinetobacter baumannii TCDC-AB0715]
 gi|332729199|gb|EGJ60542.1| putative nitrogen regulation protein NR [Acinetobacter baumannii
           6013150]
 gi|332731583|gb|EGJ62869.1| putative nitrogen regulation protein NR [Acinetobacter baumannii
           6013113]
 gi|332737898|gb|EGJ68785.1| putative nitrogen regulation protein NR [Acinetobacter baumannii
           6014059]
          Length = 369

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +    +   L   + H+I +P+  I  + +LL     ++   +   +       
Sbjct: 126 SKEENLIQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLNDESYAEFTDIIINEVDR 185

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                    G         V+    L  +  +I +      ++   +     D+  +R +
Sbjct: 186 LTNLADTMLGSRQLPSYENVNVHEPLERVRSLIANQTKKKIKITRDYDLSLPDVKADRDQ 245

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNE---------------------NIFSLKINGN 156
           ++  +  ++  ++    +      D + E                         ++ NG 
Sbjct: 246 LIQVMLNISVNAIQAITENKSFFTDQEPELILRTRIQRLVTINGVLNRSAVRVDIEDNGP 305

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V        +       + H++   +  + +     + S  L 
Sbjct: 306 GIPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGK-TMFSLYLP 361


>gi|168700450|ref|ZP_02732727.1| PAS/PAC sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 842

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 67/244 (27%), Gaps = 31/244 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VM 50
            + +   L  S  + A   L   + HD  + +  I+   +LL E     +        + 
Sbjct: 450 RRTLEEKLRQSQKMDAFGQLAGGVAHDFNNMLQVINGYADLLAEGLPPGDERAGVVAEIR 509

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +    S+      L F R        VD      D   ++   I  D R+          
Sbjct: 510 KAGERSAALTSQLLAFARQQVAAPRLVDVGAAAADTAGMLRPLIGEDVRLVTDLPRGGWP 569

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTIS--------------VQDSKNENIFSLKI 153
           +  +  ++   L      A  ++P GG +T++                 +    + S+  
Sbjct: 570 VFVDPGQLEQVLLNLAVNARDAMPAGGTLTVAARSEAVGPAEAALADMKAGEYTVLSVTD 629

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      +   ++ +    +        +    V  +  +    +              
Sbjct: 630 TGCGM-PADVQARVFEPFFTTKGVGKGTGLGLATVYGIVSQAGGHVRVRSRVGEGSTFDV 688

Query: 212 LLEK 215
            L +
Sbjct: 689 YLPR 692


>gi|153217334|ref|ZP_01951085.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587]
 gi|124113650|gb|EAY32470.1| sensor histidine kinase LuxQ [Vibrio cholerae 1587]
          Length = 834

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 441 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 500

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 501 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 560

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 561 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 620

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 621 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 679

Query: 214 E 214
            
Sbjct: 680 P 680


>gi|124023775|ref|YP_001018082.1| Signal transduction histidine kinase [Prochlorococcus marinus str.
           MIT 9303]
 gi|123964061|gb|ABM78817.1| Signal transduction histidine kinase [Prochlorococcus marinus str.
           MIT 9303]
          Length = 496

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 58/218 (26%), Gaps = 20/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLE-LLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLA-- 70
             + + H++ +PI  I      +L         +   + +I   +      +  +     
Sbjct: 269 FANALSHELRTPITLIIGYTSRVLRRSGNLSEDQRHQLTIIDDETRRLGRLITDLLDIAR 328

Query: 71  ----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                       ++        L   +   E  + +            +       + L 
Sbjct: 329 EESGTLVITSEPFSAFETLEQVLLLNQGDHETRLKIQSSSNGFDQIWALGDHDRVVQCLS 388

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTID 177
           NL   A    P   +V +S   +       ++ +G      +    F Q   G+  +   
Sbjct: 389 NLIENAFKYSPEDKRVELSCNSTHEHVRLQVRDHGPGVPEADQELIFEQFQRGSNTAQQP 448

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  L      R+  E   D   +    L++
Sbjct: 449 GSGVGLALVSSLVKRMGGRIWVENAADGGAIFVIELQR 486


>gi|27378596|ref|NP_770125.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27351744|dbj|BAC48750.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 649

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 18/220 (8%), Positives = 57/220 (25%), Gaps = 21/220 (9%)

Query: 15  VALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLSSMSA--------II 62
              + + I H++  P+G+I  + E    +L       + ++ I                 
Sbjct: 419 AGEMTTSIAHELNQPLGSILTNAETAELMLKSASPNLDELRAILADIRRDDQRASEVIRR 478

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWTGEKIDLSRERAKI 118
               ++        ++    + D+   + D           +  +             ++
Sbjct: 479 LRSMLKKTPFEIRDIELNNTVRDVIGFVADVAKGRGVVLNYLPATAELRVRGDPIHLQQV 538

Query: 119 LLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
           +LNL + A  ++         + ++   S       +   G      +  + I +    +
Sbjct: 539 VLNLVVNALDAMSEIQTGKREINVTTNVSGAWAEIRVGDTGAGIATDDLKS-IFNPFFTT 597

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +   +          +    L 
Sbjct: 598 KPQGMGMGLAIARTIVEAHHGTISAANAPSGGTLFKIKLP 637


>gi|186683294|ref|YP_001866490.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
 gi|186465746|gb|ACC81547.1| integral membrane sensor signal transduction histidine kinase
           [Nostoc punctiforme PCC 73102]
          Length = 475

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 24/233 (10%)

Query: 6   CFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54
             N  S  L +L        + + H++ +PI  +  +++ L     +E  + D   Q I 
Sbjct: 238 ELNRMSERLASLDKERRVFLANVSHELRTPISNVQVTVDALKAGASEEPELRDRFFQTIE 297

Query: 55  LSSMSAIIRLKFMRLAFG-YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------- 104
             +      +  +        G  +       +  +I   +   +   +S          
Sbjct: 298 NETKRLSRLIHDLLDLGRLEAGVFELEKQPISLHGLINRAVNALEPRMLSLGISTQVNVG 357

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       + +LNL   A    P   +V+IS      + I  ++  G   +  +  
Sbjct: 358 NLMIQGDPERLLQAILNLLDNAIKHSPANSQVSISGYSQGKQAIIQIQDQGKGIKEGDLP 417

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F Q    +       + +       +   ++  ++     +     +  L 
Sbjct: 418 RIFEQFYTTDPARKGSGNGLGLAISKRIIEAHQGSIIASSTSNQGATFTIYLP 470


>gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
 gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas
           veronii B565]
          Length = 1131

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIR 54
           +      +L     L   L +   H++ +PI  I    E +     D    + + + LI 
Sbjct: 445 LTHKQNLSLQQADKLKDELLANTSHELRTPIHGIKGMAESMLASQQDLTEGQQKQLGLII 504

Query: 55  LSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S+      +  +                 V S   +  +  + +  +       V  + 
Sbjct: 505 KSADGLARLVDDLLDYHQMRYGQLEIHSQPVSSKGVIRLVLDLCQHLVQAKPLTLVDISP 564

Query: 107 EKIDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
            ++       +   ++L NL   A    P+ GKV +S     N     +   G       
Sbjct: 565 AELPPVLADEQRLEQVLYNLVGNAIKYTPQ-GKVVLSAIVENNFLRIKVTDTGIGIAPDH 623

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F  +V  + E +     +       L H     L  E         +  L 
Sbjct: 624 LEHIFEPLVQMSPEVSKQGAGLGLSITRQLVHLMGGELFVESEPSVGSTFAFTLP 678


>gi|301307839|ref|ZP_07213795.1| putative sensor histidine kinase/response regulator [Bacteroides
           sp. 20_3]
 gi|300834182|gb|EFK64796.1| putative sensor histidine kinase/response regulator [Bacteroides
           sp. 20_3]
          Length = 887

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 28/240 (11%)

Query: 4   NICFNLSSMDLVALLC-------------SRICHDIISPIGAIHNSLELL---DEVGIED 47
           N     ++  L++L               + + H++ +P+  I   L+ L          
Sbjct: 359 NRKMRQANRKLISLNAEMKEVTAQKLQFFTNVSHEVRTPLSLILAPLDRLIVSLRESPYA 418

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDK 98
             ++LI+ ++   +  +  +       G  +                             
Sbjct: 419 SDLRLIQKNANRLLRVINQILDFRKVEGKQEKLAVREIDLVPFVGEIKSYFDSMASVRAI 478

Query: 99  RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
               + + ++  L  +     ++  NL   A    P GG V I + +  +     +   G
Sbjct: 479 SYTFTSSIKQCTLWIDPDLLERVFFNLLSNAFKFTPEGGSVRIELTEEGDRVFIQVIDTG 538

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  R             E       I  + V    H +   +  E         +  L K
Sbjct: 539 SGIRPANLPHLFDRFYTEDRSMGTGIGLHLVKEYIHMHGGEIHVESEPGQRTTFTVCLRK 598


>gi|296120946|ref|YP_003628724.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
 gi|296013286|gb|ADG66525.1| ammonium transporter [Planctomyces limnophilus DSM 3776]
          Length = 1322

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 55/225 (24%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           +   +++ H+I +P+  +   L+LL    ++D   + + +   SA               
Sbjct: 611 SQFLAKMSHEIRTPLNGVIGMLDLLKATSLDDRQKRYVTICRSSADTLLGLINDILDLSK 670

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  + L       +   I    + +     + +   +                +IL
Sbjct: 671 IEAGRMELALVDFDLHQLVEDISEMFVHRAEGKGVELACHIAPDVPQRIEGDPERLRQIL 730

Query: 120 LNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           +NL   A                     ++     +K  G      +   ++        
Sbjct: 731 VNLVGNALKFTSVGYVLIKVSMAQSPTGEHRLQIHVKDTGIGISPAQ-QQKLFQPFTQAD 789

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       LA   +  +  E         +  L 
Sbjct: 790 VTTSRRFGGTGLGLSICRQLADLMQGSIQIESAVGVGTTFTVDLP 834


>gi|270295678|ref|ZP_06201879.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274925|gb|EFA20786.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 479

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 70/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL   
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDKRVGVLNDEQEQLSNS 301

Query: 56  SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              +A                    +++    T  ++ +       QV  D   +   V+
Sbjct: 302 IKENADRLLGITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVE 361

Query: 102 VSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       S + A +L NL   A       G+V I  +  ++     ++  G    
Sbjct: 362 YPEEKMPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGAKHDEDFVEVYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  +            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVQSELGKGSRFVIRLK 478


>gi|260430311|ref|ZP_05784285.1| periplasmic sensor signal transduction histidine kinase
           [Citreicella sp. SE45]
 gi|260418783|gb|EEX12039.1| periplasmic sensor signal transduction histidine kinase
           [Citreicella sp. SE45]
          Length = 665

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 65/239 (27%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLI 53
           + +     ++   L ++  + + + H+I +PI  I  +++++ E            + LI
Sbjct: 423 LEQAFHQLVTREKLASIGEITAGVAHEINNPIAVIQGNVDVIREVLGREAEDVRTELDLI 482

Query: 54  RLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSW 104
                     +  +           +   V     L D   ++E  +       R + + 
Sbjct: 483 DDQVRRIDTIVGKLLKFSRPGDYGTFASEVPLEPVLRDCLVLVEHVVTRAHVAVRTEFAE 542

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
                    E  ++++NL + A  ++         +    +D +      ++  G     
Sbjct: 543 VPPVRVEPGELQQVVVNLIVNAVQAMGEAGELFLTLEPETRDGRAGAALRVRDTGPGVAE 602

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLSALLE 214
                           +   +       L       +    + D          +  L 
Sbjct: 603 SSIHAVFDPFFTTKQGEGTGLGLSISQSLIQRAGGLISVRNVTDEAGMVTGAEFTVWLP 661


>gi|256839888|ref|ZP_05545397.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256738818|gb|EEU52143.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 807

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 64/231 (27%), Gaps = 23/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIR 54
            +N     S  +L     + + HD+ +P+ A+    ELL          G  D ++    
Sbjct: 325 RRNRELLRSRKEL----MASVAHDLRAPLAAVKGCAELLPSESDVSRRSGYLDNILHSAD 380

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVS-WTG 106
                    +++ R+  G   S D           + D  ++I     +   V  S    
Sbjct: 381 YMLGLVNTLMEYHRMDEGEVRSNDTLFSLKALFEEIADSHRLIARQKDLAFTVSFSGLDA 440

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                S    +I  NL   A    P G     +          S++  G      E    
Sbjct: 441 VVCCDSSHIRQIAGNLLSNALKFTPHGEVRLEAEYLYGE-LSISVRDTGVGISAEEKERI 499

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F      +    I    +       L  E + R+  +         S  L 
Sbjct: 500 FGAFERLDNARNIPGFGLGLAITARLVSEMRGRVEVKSAPGEGSRFSVFLP 550


>gi|255524542|ref|ZP_05391497.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255511838|gb|EET88123.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 230

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 64/220 (29%), Gaps = 22/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLEL------LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           + S I HD+ +P+ ++   +EL      L E      +  +    +    +  +F +++ 
Sbjct: 8   MISNISHDLRTPLTSMLGYIELVLNDNTLSEEEKRKYIEIVYNKGNHLYSLMEEFFQVSK 67

Query: 72  GYTGSVDS-----------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
             +  V                +      ++      +              +   +IL 
Sbjct: 68  LESKDVKLDIRKVNISEIIRQNIISFFNELKKRDMEPQINIPEEDIYAFGNEKAVNRILS 127

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTID 177
           NL   +      G  + +++   KN    S+  NG      E    F ++        ++
Sbjct: 128 NLINNSLKYGSEGTTIGVNLTYDKNNVFISVWDNGVGIPKEEIDYVFDRLYTVEKSRKLN 187

Query: 178 --SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             S  +    V  L       +    I       +  L K
Sbjct: 188 LKSSGLGLTIVKKLVEALGGTISVSSIPFEKTAFTFTLPK 227


>gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC
           43243]
          Length = 874

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/246 (9%), Positives = 58/246 (23%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +N+   LS+  L     +   S + HDI +P+ +I    ++L     + + ++      
Sbjct: 567 KRNLQDALSAAKLANEAKSRFLSNMSHDIRTPLNSIIGMTDILKSHPDDTKQVEEGLDKI 626

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----------------KRV 100
             +   L  +         ++S              +  +                   +
Sbjct: 627 SMSGRHLLELINDILDMSRIESGKMSLQESGFNIRAMMSELIELVRPQALGSGITFISDI 686

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKI 153
                   I       +I LN+   A               +        ++  IF    
Sbjct: 687 VSIEHDNVIGDELRIKQIYLNILSNAVKYTWAGGSITITLREDGDVKNGRRHSYIFICSD 746

Query: 154 NGNLARFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           NG       +                 +    +       L +     +  +       V
Sbjct: 747 NGIGMSREFQKHIFDSFERAEDNAIGNVTGTGLGMAIARNLVNLMGGTIDVDSRLGKGSV 806

Query: 209 LSALLE 214
            +  + 
Sbjct: 807 FTVTIP 812


>gi|77462680|ref|YP_352184.1| sensor histidine kinase [Rhodobacter sphaeroides 2.4.1]
 gi|77387098|gb|ABA78283.1| Sensor Histidine kinase [Rhodobacter sphaeroides 2.4.1]
          Length = 587

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELL---DEVGIEDEVMQLIRLSSMSAI 61
            S  L AL  + + + H++  P+ A+   L   +LL             Q I        
Sbjct: 357 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGAKLLLQRRRTEEALASFQRIDDLIERMG 416

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--------SWTGEKIDLSR 113
              + ++      G     + +          +    +++V              +    
Sbjct: 417 AITRQLKSYARKGGEAFEPVDMRLCVSSALTMMEPQLKIRVVRITRTLPRQPVMVMADRL 476

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +        I +   +      +++ NG+     E    + +   
Sbjct: 477 RLEQVIINLLRNALDATKIVPSPQIDLVLAAGETATLTVRDNGHGI---EDLDNLFEPFY 533

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +   +       +  +   RL     D    V    L 
Sbjct: 534 TTKKPGEGVGLGLAISSGIVTDLGGRLTARNADGGGAVFEVQLP 577


>gi|51244227|ref|YP_064111.1| Ntr two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50875264|emb|CAG35104.1| related to two-component system sensor histidine kinase (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 563

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 15/227 (6%)

Query: 3   KNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRL 55
           KN+   L  S  + AL  + S I H+I +P+G +        +         E  QL+  
Sbjct: 329 KNMEAQLELSRRMAALGKMASGIAHEIRNPLGTLRGFAYFFGKSNNASEETKEYSQLMVA 388

Query: 56  SSMSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                   +  +                 + L  +  + ++      +     +      
Sbjct: 389 EIDRLNRIVSGLLQFSRPREPQLQTTCLSELLKKIKLLLEMDFSTAKIKVSWPMDQGIII 448

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L+N+   +  +   GG + I   +  +  I S+   G      E+  Q+ 
Sbjct: 449 NADPDLILQVLMNILRNSIIATATGGTIDIECSEDNDSVIISIADTGCGMSEKER-EQMF 507

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           D    ++     +       +  +++         +    +  +L K
Sbjct: 508 DPFFTTSKTGTGLGLAVSHQIIAQHRGFFEVSTAQNRGTNIRIILPK 554


>gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 842

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 60/248 (24%), Gaps = 37/248 (14%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +      +   + + H+I +P+  I    EL      + ++   +++ 
Sbjct: 442 MEEDLRQAKQAAEAANQAKSEFLASMSHEIRTPMNGIIGLTELALMQEPKAKIRDYLQMV 501

Query: 57  SMSAIIRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             SA   L  +                        D L  L +  ++  +   +     +
Sbjct: 502 KQSANSLLDIINDILDLSKIEAGRVELEHADFDLRDMLDSLFETMRIGAERKGLSFSTAI 561

Query: 103 SW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------------E 146
                           +I +NL   A      G        +                  
Sbjct: 562 DPGVPDWIKGDEGRLRQIFVNLIGNAIKYTEAGQVSVRVGVEDGRGAQDAGGRNTPERVC 621

Query: 147 NIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
            + S+K  G           F     G   +  D   +       L      R+  +   
Sbjct: 622 LVASVKDTGGGIPKDKLGRIFEPFDTGARSAKYDGTGLGLAITKRLVELMGGRITVQSEL 681

Query: 204 DHNVVLSA 211
                 S 
Sbjct: 682 GRGSTFSF 689


>gi|301307858|ref|ZP_07213814.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|300834201|gb|EFK64815.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 767

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           M + +       +L   L     + + H+I +P+ AI    EL+   D+   + E + +I
Sbjct: 532 MIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTCDDPEEKKEYINII 591

Query: 54  RLSSMSAIIRLKF----MRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTG 106
           + ++   +  +       ++  G             + +   V       +  V++   G
Sbjct: 592 QSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNVELRLDG 651

Query: 107 EKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              +           ++ +N    A       G + +     +      ++  G      
Sbjct: 652 PNSECWVLLDRNRLKQVWMNFLTNAVKCTKS-GYIKMGYGIERKGLRIYVEDTGIGI-PD 709

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++               +       +       +             A L 
Sbjct: 710 DLHDKVFTRFEKLNEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTFWAWLP 764


>gi|298386496|ref|ZP_06996052.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
 gi|298260873|gb|EFI03741.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_14]
          Length = 785

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 50/220 (22%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNS------LELLDEVGIEDEV--------MQLIRL 55
            S  L     + + H+I +P+ AI          E L+E  +   +        +QLI  
Sbjct: 421 QSDRLKTAFLANMSHEIRTPLNAIVGFSNLLPSAETLEEEKLYSSIINQNSEILLQLIND 480

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               + I    +          +    +  I +                     +     
Sbjct: 481 ILDLSKIEAGTLEYVRQPMNLGEVCRNIYQIHKDRVQEGVTLILDNEDDDLIIEEDRNRI 540

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
           A+++ N    A      G        D      F +K  G      +            S
Sbjct: 541 AQVITNFLTNAGKFTLSGEIRFGFKVD-NQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNS 599

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      ++  +    +               + 
Sbjct: 600 FAQGTGLGLAICRMIIEKIGGEIGATSEVGKGSTFFFTIP 639


>gi|294506481|ref|YP_003570539.1| Sensor kinase [Salinibacter ruber M8]
 gi|294342809|emb|CBH23587.1| Sensor kinase [Salinibacter ruber M8]
          Length = 486

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 54/232 (23%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
           +     L  M  L +     + H++ +PI +I   LE L     +        +    + 
Sbjct: 246 REKIEELERMTRLQSEFIGNVSHEVRNPIFSISGYLEALGTPGLDDEQRKMYSEKALTNL 305

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLI-------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                    +          D +         L D    +    A +K + +     +  
Sbjct: 306 NRLQNLFNDLIDIARLEYKEDLINRSVFDLKDLVDEVAEMLRPKAEEKGLDLEADVSRFF 365

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
           +  +R+++   L        A    G       +         +   G           F
Sbjct: 366 VHADRSRVRQVLTNLIENGIAYTGGGSVRCRVQRRLDK-VRVEVVDTGQGIDEDHLDRIF 424

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +         +    V  +   +   +  E            L 
Sbjct: 425 ERFYRVDPDRSRESGGTGLGLSIVKQILQAHGEDIHVESTKGRGTRFWFELP 476


>gi|288958788|ref|YP_003449129.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
 gi|288911096|dbj|BAI72585.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
          Length = 413

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 74/236 (31%), Gaps = 27/236 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMS 59
                     L     + + H++ +P+ +I    ++L   G+      + ++ ++L   S
Sbjct: 175 EAARKADRAKL--DFLAVMSHELRTPLNSIIGFADVLAGEGMGKLGHPDYLEYVKLIEES 232

Query: 60  AIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               L  +     YT                   L G  D+         +   V+    
Sbjct: 233 GRSLLTMVNNILDYTRGSTGSIEIQDSDVNIPQLLTGCADMLAPKAAGKGLALAVRPCPA 292

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  R   +++LNL   A      GG VT++V+D       +++ +G      +   
Sbjct: 293 FRMRVDRRRLREMVLNLLDNAVKFTQPGGTVTVAVEDRGAFVGLTVRDDGPGI-PGDLMG 351

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I +   +         +   +    V   A  +   +  +       +++ LL K
Sbjct: 352 RIFNPFTQAEHSLVRRHEGVGLGLPIVRRFAELHGGGVELDSAPGRGTMVTILLPK 407


>gi|262382720|ref|ZP_06075857.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262295598|gb|EEY83529.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 767

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           M + +       +L   L     + + H+I +P+ AI    EL+   D+   + E + +I
Sbjct: 532 MIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTCDDPEEKKEYINII 591

Query: 54  RLSSMSAIIRLKF----MRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTG 106
           + ++   +  +       ++  G             + +   V       +  V++   G
Sbjct: 592 QSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNVELRLDG 651

Query: 107 EKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              +           ++ +N    A       G + +     +      ++  G      
Sbjct: 652 PNSECWVLLDRNRLKQVWMNFLTNAVKCTKS-GYIKMGYGIEREGLRIYVEDTGIGI-PD 709

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++               +       +       +             A L 
Sbjct: 710 DLHDKVFTRFEKLNEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTFWAWLP 764


>gi|256838767|ref|ZP_05544277.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256739686|gb|EEU53010.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 657

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
           M + +       +L   L     + + H+I +P+ AI    EL+   D+   + E + +I
Sbjct: 422 MIQQLKELKEKAELSDRLKSAFLANMSHEIRTPLNAIVGFSELMVTCDDPEEKKEYINII 481

Query: 54  RLSSMSAIIRLKF----MRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTG 106
           + ++   +  +       ++  G             + +   V       +  V++   G
Sbjct: 482 QSNNELLLRLINDILDLSKIESGIIERRKENFNLAKVCNELFVTIQAKMTNPNVELRLDG 541

Query: 107 EKIDLS-----RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
              +           ++ +N    A       G + +     +      ++  G      
Sbjct: 542 PNSECWVLLDRNRLKQVWMNFLTNAVKCTKS-GYIKMGYGIEREGLRIYVEDTGIGI-PD 599

Query: 162 EKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++               +       +       +             A L 
Sbjct: 600 DLHDKVFTRFEKLNEFSQGTGLGLTISRAIVEAAGGEVGFTSKLGVGSTFWAWLP 654


>gi|255007562|ref|ZP_05279688.1| putative two-component system sensor histidine kinase [Bacteroides
           fragilis 3_1_12]
 gi|313145254|ref|ZP_07807447.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313134021|gb|EFR51381.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 389

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 70/230 (30%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           AK      + +     L + + H+I +P+ AI     LL   D+   + E + LI+ ++ 
Sbjct: 156 AKERAEEANRLKSA--LIANMNHEIRTPLNAIVGFASLLSIVDDEKEQQEYIGLIQSNTE 213

Query: 59  SAIIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----- 106
             +  +  +              GS   L  L +  + I    A  + + ++W G     
Sbjct: 214 HLLRLMNDVIDLSNIESGVMDMAGSDVLLDPLMEEIEQIYRPKAESRNLVLAWDGEQLGA 273

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +IL +L   A     +G       +  +    F +   G      EK   
Sbjct: 274 HIYTDRGRLIQILEHLLCNAIKFTLKGTVRLGYRKKEEGRIWFYVTDTGCGI-PEEKKEL 332

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  V  +  +    +      ++       +  +            L 
Sbjct: 333 IFERFVKLDDFVQGLGLGLPLCKIIVDRLHGTIGVDSKVGEGSTFWFTLP 382


>gi|253572318|ref|ZP_04849721.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
 gi|251838093|gb|EES66181.1| two-component system sensor histidine kinase [Bacteroides sp.
           1_1_6]
          Length = 785

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 50/220 (22%), Gaps = 16/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNS------LELLDEVGIEDEV--------MQLIRL 55
            S  L     + + H+I +P+ AI          E L+E  +   +        +QLI  
Sbjct: 421 QSDRLKTAFLANMSHEIRTPLNAIVGFSNLLPSAETLEEEKLYSSIINQNSEILLQLIND 480

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               + I    +          +    +  I +                     +     
Sbjct: 481 ILDLSKIEAGTLEYVRQPMNLGEVCRNIYQIHKDRVQEGVTLILDNEDDDLIIEEDRNRI 540

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ES 174
           A+++ N    A      G        D      F +K  G      +            S
Sbjct: 541 AQVITNFLTNAGKFTLSGEIRFGFKVD-NQCIRFYVKDTGIGIAPDKVGHIFDRFVKLNS 599

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +      ++  +    +               + 
Sbjct: 600 FAQGTGLGLAICRMIIEKIGGEIGATSEVGKGSTFFFTIP 639


>gi|253700882|ref|YP_003022071.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251775732|gb|ACT18313.1| multi-sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 692

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 29/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------LIRLSSMSAI 61
             ++ V LL   + HD  + +  I    E+L         ++            +S    
Sbjct: 309 QKLEAVGLLAGGVAHDFNNILTVIGGYCEMLKLDLAPGHPLRDKVLQISAASERASNLTR 368

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKIDLSRERAKI 118
             L F R         D  + L  +E+ ++  I  D  +       +   +  S +  ++
Sbjct: 369 SLLAFSRKGEVKAVPTDLNLLLRGVEKFLQRIIGEDITLSTKVPESSIWAVVDSGQIDQV 428

Query: 119 LLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L+NL   A  ++P+G                          +  + ++   G      E 
Sbjct: 429 LMNLAANARDAMPKGGSLFVELERQDIDAGFVQAHGFGTPGSYALLTVSDTGQGM-DEET 487

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    + +      +    V  +  ++K  +               L 
Sbjct: 488 RNRIFDPFFTTKVAGKGTGLGLAIVYGIVIQHKGFVNVYSEPGVGSTFRIYLP 540


>gi|227328226|ref|ZP_03832250.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium carotovorum subsp. carotovorum
           WPP14]
          Length = 935

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 435 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDANRLVAAM 494

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I+                    +
Sbjct: 495 NNSSSLLLKIISDILDFSKIESEQLKIEACEFAPHEVISHITSNYLPLVVKKRLTLYCFI 554

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
             +             ++L NL   A       G +   V        F ++  G   + 
Sbjct: 555 DPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIIFEVGCRDGYLEFVVRDTGVGIQP 613

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +  E       +    + 
Sbjct: 614 REAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLFGVRIP 672


>gi|83816112|ref|YP_444718.1| phosphate regulon sensor protein phoR [Salinibacter ruber DSM
           13855]
 gi|83757506|gb|ABC45619.1| phosphate regulon sensor protein phoR [Salinibacter ruber DSM
           13855]
          Length = 434

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 54/232 (23%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
           +     L  M  L +     + H++ +PI +I   LE L     +        +    + 
Sbjct: 194 REKIEELERMTRLQSEFIGNVSHEVRNPIFSISGYLEALGTPGLDDEQRKMYSEKALTNL 253

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLI-------GLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                    +          D +         L D    +    A +K + +     +  
Sbjct: 254 NRLQNLFNDLIDIARLEYKEDLINRSVFDLKDLVDEVAEMLRPKAEEKGLDLEADVSRFF 313

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
           +  +R+++   L        A    G       +         +   G           F
Sbjct: 314 VHADRSRVRQVLTNLIENGIAYTGGGSVRCRVQRRLDK-VRVEVVDTGQGIDEDHLDRIF 372

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +         +    V  +   +   +  E            L 
Sbjct: 373 ERFYRVDPDRSRESGGTGLGLSIVKQILQAHGEDIHVESTKGRGTRFWFELP 424


>gi|318079811|ref|ZP_07987143.1| two-component system sensor kinase [Streptomyces sp. SA3_actF]
          Length = 475

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/229 (8%), Positives = 57/229 (24%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55
           + K++              + + H++ +P+ A+    ++L E     +      ++L+  
Sbjct: 232 LEKSVAELRRMEARARRFAADVSHELRTPLAAMTAVTDVLAEEAPRFDEDTADAVRLVTE 291

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +M     ++ +     +        + D  +       +           ++       
Sbjct: 292 ETMRLARLVEDLMEISRFDAGAVELHADDLDLAESVRRTLSTRGWTGRVETELPAGVRAR 351

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              R    ++ NL   A        ++ +    S       +   G              
Sbjct: 352 VDPRRLDVVVANLVGNALKHGAAPVRLALRPLPSPRGVEIEVSDRGPGVPEAALPHLFDR 411

Query: 170 GNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +  +S  +           +   +      D   V +  L 
Sbjct: 412 FFKAGAARTRSESSGLGLAITHENVRLHGGDVTAANRPDGGAVFTVRLP 460


>gi|291443482|ref|ZP_06582872.1| two-component sensor [Streptomyces roseosporus NRRL 15998]
 gi|291346429|gb|EFE73333.1| two-component sensor [Streptomyces roseosporus NRRL 15998]
          Length = 381

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 52/221 (23%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 153 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAGRVTRLIAELLD 212

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                          VD    +    Q +       +R  V   G   DL  +     ++
Sbjct: 213 ISRIDSGRLELRRQPVDISAAVARHIQALITGGQAAERFLVRTRGPLPDLWADPDKVDQV 272

Query: 119 LLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L NL   A                      +     ++   G                  
Sbjct: 273 LGNLLENAVRHGEGTVTIEIAPAAAPGGCDEMGTAVTVSDEGPGIPEESMSRVFTRFWRG 332

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +  Y V  +   +   +  +           +L 
Sbjct: 333 SKRGGTGLGLYIVKGIVEAHGGTITVDRGPRGGAEFRFILP 373


>gi|283480151|emb|CAY76067.1| protein histidine kinase/phosphatase sensor for OmpR [Erwinia
           pyrifoliae DSM 12163]
          Length = 463

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 59/205 (28%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 249 TLLMAGVSHDLRTPLTRIRLATEMMAEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 308

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +   +              + + N+ + A      
Sbjct: 309 QFERADLNSVLGEVVAAESGYEREIENAVLPGELMLDINPLAIKRAIANMVVNAARYGNG 368

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G           F   V G+   +     +    V  +
Sbjct: 369 WIKVSSGSELQ--RAWFQVEDDGPGIEPDQLKHLFQPFVRGDSARSTSGTGLGLAIVQRI 426

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     D   + + A L 
Sbjct: 427 IDAHYGTLEIGKSDKGGLRIRAYLP 451


>gi|302519463|ref|ZP_07271805.1| two-component system sensor kinase [Streptomyces sp. SPB78]
 gi|318060149|ref|ZP_07978872.1| two-component system sensor kinase [Streptomyces sp. SA3_actG]
 gi|302428358|gb|EFL00174.1| two-component system sensor kinase [Streptomyces sp. SPB78]
          Length = 559

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/229 (8%), Positives = 57/229 (24%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55
           + K++              + + H++ +P+ A+    ++L E     +      ++L+  
Sbjct: 316 LEKSVAELRRMEARARRFAADVSHELRTPLAAMTAVTDVLAEEAPRFDEDTADAVRLVTE 375

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +M     ++ +     +        + D  +       +           ++       
Sbjct: 376 ETMRLARLVEDLMEISRFDAGAVELHADDLDLAESVRRTLSTRGWTGRVETELPAGVRAR 435

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              R    ++ NL   A        ++ +    S       +   G              
Sbjct: 436 VDPRRLDVVVANLVGNALKHGAAPVRLALRPLPSPRGVEIEVSDRGPGVPEAALPHLFDR 495

Query: 170 GNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +  +S  +           +   +      D   V +  L 
Sbjct: 496 FFKAGAARTRSESSGLGLAITHENVRLHGGDVTAANRPDGGAVFTVRLP 544


>gi|254684476|ref|ZP_05148336.1| sensor histidine kinase, putative [Bacillus anthracis str.
           CNEVA-9066]
 gi|254724003|ref|ZP_05185789.1| sensor histidine kinase, putative [Bacillus anthracis str. A1055]
          Length = 355

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 113 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHSNGEECEQYVS 172

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S          +         ++    + +++  IE  +                
Sbjct: 173 ILKRKSYELKNQVDDLLEYCQINYREIELQKSVVNMKAFIEQIMIDFVPQLDDADMSFCI 232

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I +          +K  G     
Sbjct: 233 KGDKGLHVEMDVALMVRLFENVISNSIMYGKDGKQIWIQISKRDMNVEIEIKNFGQCIPN 292

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     D    V + +L 
Sbjct: 293 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDIAVRSNDKE-TVFTIVLP 350


>gi|228938515|ref|ZP_04101123.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228971394|ref|ZP_04132020.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228978007|ref|ZP_04138386.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407]
 gi|228781668|gb|EEM29867.1| hypothetical protein bthur0002_12110 [Bacillus thuringiensis Bt407]
 gi|228788261|gb|EEM36214.1| hypothetical protein bthur0003_11740 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228821113|gb|EEM67130.1| hypothetical protein bthur0008_11800 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 466

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 59/214 (27%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKELHISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +      E   D    +   L
Sbjct: 424 GLGLAIVKQIVHIHGGHWKIESEKDKGTTVIIKL 457


>gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
 gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
           obscurus DSM 43160]
          Length = 1711

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 62/238 (26%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
            +     L+ +D       S + H+  +P+  I   +  L             E +++I 
Sbjct: 334 ERRRAEALAELDRAKTDFFSNVSHEFRTPLTLIAGPVAELRASPVAASDPRVREELEVIE 393

Query: 55  LSSMSAIIRLKFMRLAFGYT--------GSVDSLIGLGDIEQVIEDFIAVD----KRVQV 102
            ++      +  +                 VD      ++  V    +A           
Sbjct: 394 RNAQRLGRLVNTLLDFSRIQAGRIDARFEPVDLAATTAELASVFRSAVARAGLEFTVDCA 453

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
              G          K++LNL   A      GG      Q+  +    S+   G      E
Sbjct: 454 PLDGPVHIDRDMWEKVVLNLLSNALKFTFTGGIAVRLRQEDGS-ARLSVTDTGTGIPADE 512

Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +           + +   I    V  L   +   +  +   D     +  L 
Sbjct: 513 LP-RLFERFHRVADARGRSGEGSGIGLAMVRELVGLHGGTIDVDSAPDTGTTFTVTLP 569


>gi|255280413|ref|ZP_05344968.1| sensory box histidine kinase [Bryantella formatexigens DSM 14469]
 gi|255268878|gb|EET62083.1| sensory box histidine kinase [Bryantella formatexigens DSM 14469]
          Length = 442

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 66/232 (28%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
            K     + S  +     + + H++ +P+ AI    EL++     +        ++ + S
Sbjct: 208 QKQHSDIVKSSQMRQEFTANVSHELKTPLTAISGYSELIESGIATKEDTVRFSAEIHKSS 267

Query: 57  SMSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVS--WTGE 107
           +   ++    +RL+   +         VD          +++               +  
Sbjct: 268 NRLLMLINDILRLSELDSSEDVLVKETVDLYELAEKCVDMMQVNAEKHHVTLRLAGGSCF 327

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                    +++ NL   A       G V ++V    N  + +++  G      +    F
Sbjct: 328 IQANREMIEEVMYNLCSNAIRYNVPDGSVVMTVGMEGNHAVLTVEDTGIGIPEEDQKRIF 387

Query: 165 TQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +     +     +    V     ++   +           +  +  
Sbjct: 388 ERFYRVDKSRSKSTGGTGLGLAIVKHAVAKHGAEIGLWSKTGVGTRMRVVFP 439


>gi|229543410|ref|ZP_04432470.1| histidine kinase [Bacillus coagulans 36D1]
 gi|229327830|gb|EEN93505.1| histidine kinase [Bacillus coagulans 36D1]
          Length = 465

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 17/217 (7%), Positives = 64/217 (29%), Gaps = 18/217 (8%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           +   + I H++ +P+  I    ++  +          + + +     S          ++
Sbjct: 237 SEFLASISHELRTPLTYIKGYADIARKNNCADNETYLNIIYEEAAKLSDMIQNLFDLAKM 296

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------VQVSWTGEKIDLSRERAKILLNL 122
                        L  + + IE  ++   +       V+   + + I       ++++NL
Sbjct: 297 DRNSFQIQKQNFPLFQMLKQIEHKLSPAFQNKRIILTVKCHPSIQLIADPVRFEQVVINL 356

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTID 177
              A+        + ++V+ +       ++ +G      +    F +    +     +  
Sbjct: 357 LDNAYKYSEPHTNIFLTVKKADGAWKLIVQDHGKGIPEEDLPYIFERFYRVDKSRSRSFG 416

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +   +  +  +     +    +
Sbjct: 417 GTGLGLAIVKEIVEAHNWHIHADSREGIGTTMEIRFQ 453


>gi|114570677|ref|YP_757357.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
 gi|114341139|gb|ABI66419.1| multi-sensor hybrid histidine kinase [Maricaulis maris MCS10]
          Length = 815

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 59/238 (24%), Gaps = 27/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H+I +P+  I     +L +  + D+V   + +   S  
Sbjct: 413 ARDRANAANRAK--SDFLANMSHEIRTPMNGILGMARVLADKDLPDDVNSKLDVIVRSGD 470

Query: 62  IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             +  +      +              D  I    +E +  D         +  V     
Sbjct: 471 TLMHLLDDILDLSKIEAGQIELDEAPFDLEIIGSRVEALYRDTADKKGLTLEVEVTDRDG 530

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA--- 158
             +       ++I  NL   A      G         +     +     +   G      
Sbjct: 531 VSRHGDPLRLSQIANNLVANAIKFTASGKVRMTLGPTADGPDSDMIELVVSDTGIGMSEA 590

Query: 159 RFPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F + V  +           +       LA +    +            +  L 
Sbjct: 591 QCQSIFEKFVQADSSTTRRFGGTGLGLAICKGLADQMGGTIDVASNPGQGTTFTVRLP 648


>gi|52425785|ref|YP_088922.1| BaeS protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307837|gb|AAU38337.1| BaeS protein [Mannheimia succiniciproducens MBEL55E]
          Length = 614

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 67/243 (27%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSM-DLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + + I    ++   L         L + I H++ +P+  I     +L +  + +E    +
Sbjct: 94  LQQEIRERTTAEQRLAQAIRDKTTLMATISHELRTPLNGIVGLSRILLDSKLTEEQYNYL 153

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------------- 98
           +  ++SA+                 S I L   E      I                   
Sbjct: 154 KTINVSAVSLGHIFNDIIDLEKLDGSRIELYKKETDFHALITDVYNVAQLMAEQKHLKFI 213

Query: 99  -RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            +V        +      +++L NL   A     +G       + S+N   F++   G  
Sbjct: 214 LQVDKDLPNWLLLDYTRLSQVLWNLISNAVKFTDKGTVTLKISRLSENRYAFAISDTGPG 273

Query: 158 ARFPEK------FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               E       + Q+     +       I       +A      L+ E           
Sbjct: 274 IPENELNKIFTMYYQVKANFNKHKAAGSGIGLAISKSIARLMNGDLVVESEIGKGSTFIL 333

Query: 212 LLE 214
            ++
Sbjct: 334 TIQ 336


>gi|186682689|ref|YP_001865885.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465141|gb|ACC80942.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1211

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 64/248 (25%), Gaps = 34/248 (13%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIR 54
            K++      + L +       + + H++ +P+ ++     LL +  + +   + ++  R
Sbjct: 511 RKSLEEKAEQLALSSKYKSEFLANMSHELRTPLNSLLILARLLADNSLNNLTDKQVEYSR 570

Query: 55  LSSMSAIIR------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
               +          +  +      T S+D         +   +            +   
Sbjct: 571 TIYSAGTDLLELINDILDLAKIESGTMSLDIEQIAFADLETSLEQTFRQVAHNKELSFTI 630

Query: 109 ----------IDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLK 152
                      + S+   ++L NL   A     R          + + Q       F++ 
Sbjct: 631 ELDSKLPPTIYNDSKRLQQVLKNLLANAFKFTERGGVKLEITMSSDAAQIDNPMVAFAVS 690

Query: 153 INGNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G            +  Q  DG          +       LA     R+          
Sbjct: 691 DTGIGIPAEKQKVIFEAFQQADGTTSRKYGGTGLGLSISRELAQLLGGRIELVSKPGQGS 750

Query: 208 VLSALLEK 215
             +  L +
Sbjct: 751 TFTLYLPR 758


>gi|326795178|ref|YP_004312998.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
 gi|326545942|gb|ADZ91162.1| integral membrane sensor hybrid histidine kinase [Marinomonas
           mediterranea MMB-1]
          Length = 1000

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 62/214 (28%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H+I +P+ AI     L+ +  +++   + I     S+   L+ +     ++     
Sbjct: 245 ATMSHEIRTPMNAIIGLTHLVLDTELQERQRRYINRIDESSNNLLQLINDILDFSKVESG 304

Query: 80  LIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLNLF 123
            + L +   +++D +     + +                +     I       ++L+N+ 
Sbjct: 305 KLDLVERSYLLDDVLEYIHHISLPTARSKKLLLLVQRDFNLDDAFIGDVTRIQQVLVNVV 364

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-EKFTQIVDGN--VESTIDSHD 180
             A     +G       +  +   +F ++ +G       + F      +           
Sbjct: 365 GNAIKFTDKGYVCVTVKRRQEGGLLFCVEDSGIGIDSTLDVFDGFTQADASTTRKYGGTG 424

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L       +  +            L 
Sbjct: 425 LGLSISKRLLELMGGHISFKSQVGRGTTFFIELP 458


>gi|307298685|ref|ZP_07578488.1| integral membrane sensor signal transduction histidine kinase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915850|gb|EFN46234.1| integral membrane sensor signal transduction histidine kinase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 460

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 67/236 (28%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
           M + +  ++          S   H++ +P+ AI + +++ L      +E +  +      
Sbjct: 223 MLERLEESVKKQR---QFTSDAAHELRTPLTAIRSIVDVTLHRDRSSEEYVSALLQIQNE 279

Query: 60  AIIRLKFMRLAFGYTGSVD--------------SLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                  +      T   +               +  + +   V+     ++    +   
Sbjct: 280 IERLSSVIDDLLIITRLENTLPKREFAVFSVSALIWEVLETMMVLAKEKNIEIETDLQEN 339

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEK 163
            E     +  ++ + NL   A    P  GK+ I+ + S+        ++ NG   +  E 
Sbjct: 340 VEIAGDRKHLSRAVFNLVDNAIKYTPENGKIRIAAKLSESKERIEIIVEDNGIGIQL-ED 398

Query: 164 FTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D         S      +       +   +   +  +            L 
Sbjct: 399 MERIFDRFYRVDRARSQTRGTGLGLSIAKEIVKAHGGVISVKSSPGKGSTFKVSLP 454


>gi|300863635|ref|ZP_07108575.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506]
 gi|300338377|emb|CBN53719.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506]
          Length = 945

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 66/232 (28%), Gaps = 18/232 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +     L +  L       I H+  +P+      LE           ++  I     + 
Sbjct: 303 RQQAERLLEADRLKTEFFQNISHEFRTPLTLTIGPLESAVSLKQDLPYEQAAIALRNSRR 362

Query: 53  IRLSSMSAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEK 108
           +       +   +             D +       +    +      +   Q+      
Sbjct: 363 LLRLVNQLLDLQRLDAGRMQPSFRPTDLVGFCRSTVESFRPYCEKKGINLITQLENCPPL 422

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---- 164
                   K+L NL   A    P GG +TIS+ +  +  +  +K +G   R  +      
Sbjct: 423 YLDIERFDKVLYNLLSNAMKFTPSGGNITISLSNVSSHCLLQVKDSGIGIRTEQIPYLFE 482

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +G+   + +   +    V  L   +  ++  E +       +  L K
Sbjct: 483 RFRQAEGSASRSYEGSGLGLALVKELVELHAGKISVESVYGEGSTFTVWLVK 534


>gi|298242405|ref|ZP_06966212.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297555459|gb|EFH89323.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 569

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 61/236 (25%), Gaps = 39/236 (16%)

Query: 17  LLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQLIR---------- 54
              S + H++ +P+  I  SL+            LL +  + +++ ++            
Sbjct: 330 QFLSIVSHELRTPLTTISMSLQYSRLLLSNTTQTLLADDPLREKLQEIHHLLGRAERQVG 389

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TG 106
           + +       +   +             L     ++          +V            
Sbjct: 390 VQNRIINDLFELSSIQSSRFLLQPVACELQSTLSLLVSDYQSSHPERVITFVPPVSAQPI 449

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L N    A    P    + +SV+  + E    ++  G      E   Q
Sbjct: 450 PTEIDVERITQVLNNYMNNACKYTPPVTPIEVSVEVVQEEARVLVRDEGPGLTAEE-QEQ 508

Query: 167 IVDGNVE--------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                     +  Y   ++  +++ R+  E       +    L 
Sbjct: 509 VWKLFYRVPGVEANEGASKGAGLGLYICQVIVEQHQGRVGVESTPGVGSIFWFTLP 564


>gi|293375524|ref|ZP_06621801.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|292645864|gb|EFF63897.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
          Length = 455

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 67/229 (29%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           N+   L   + L   L + I H++ +P+  I   L+++     E    +L+ ++      
Sbjct: 225 NLSLALDEQEMLRKQLTTDIAHELRTPLTTIKGHLDVMIAGIWEPTSERLMSINEEVVRI 284

Query: 59  -SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----- 112
              +  L+ +         ++      D   V   +    +  + +   +          
Sbjct: 285 SRMVDELRHLSKYDSERTKLELSKIRLDELLVSVIYNYQVQAFEKNIEIQSQIEPVVALV 344

Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQI 167
             ++ +++L+NL   A      GG +T+     +      +  NG           F + 
Sbjct: 345 DEKKFSQVLINLLSNATKYTNVGGVITVMCHSDEQHIYIKVVDNGIGIPEVDLKHIFERF 404

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           +       +   +   L  +            L+
Sbjct: 405 YRVDKSRSKETGGIGVGLTIAKSIVEAHGGLLSVKSEVGIGSEFMIQLK 453


>gi|228906118|ref|ZP_04070007.1| hypothetical protein bthur0013_3030 [Bacillus thuringiensis IBL
           200]
 gi|228853527|gb|EEM98295.1| hypothetical protein bthur0013_3030 [Bacillus thuringiensis IBL
           200]
          Length = 369

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 72/224 (32%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           M +     +     +  + + I H+I +P+ A+    ++  +    +     ++      
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPADTMSYDIMLQEIER 204

Query: 60  AIIRLKFMR-------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
               +  +          +      D L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q +K     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTKGHLCISVEDQGFGI-ENEKLKKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKENGTGLGLMITYKIIKEHQGSITIQSSLGVGTKVEIFLP 367


>gi|229101999|ref|ZP_04232712.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28]
 gi|228681386|gb|EEL35550.1| hypothetical protein bcere0019_11640 [Bacillus cereus Rock3-28]
          Length = 466

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 59/215 (27%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYELKFIEKKLRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGNIIITLEQIDDYCELKIKDTGIGIDAEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +      E        +   L+
Sbjct: 424 GLGLAIVRQIVHIHDGEWKIESEKGKGTTVFIKLK 458


>gi|258404601|ref|YP_003197343.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
 gi|257796828|gb|ACV67765.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
          Length = 596

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 54/221 (24%), Gaps = 26/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+ +I    E L +            MQ++  ++ +    L+ +     
Sbjct: 371 FVANVSHELRTPLTSIKGYAETLLDMGQVETEAVHAYMQVVVKNANAMSRLLEDLLQLSK 430

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------EKIDLSRERAKILL 120
              +         +            +                             ++L 
Sbjct: 431 LESNAGDRELGPVLLTNAIQAAWKYCQPMAEEHHVSLNQSQIPAGVCVWSEYDPLVQVLR 490

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--- 177
           NLF  A    P   +V I  +        S+  +G      E   +I +           
Sbjct: 491 NLFENAIKFSPENTEVRIEAEQDGPIWQISVVDSGPGVGQRE-QERIFERFYRVQHGSKQ 549

Query: 178 --SHDIQFYYVILLAHENKIRLLPEI-IDD--HNVVLSALL 213
                +       +   +  R+  E  +            L
Sbjct: 550 VAGTGLGLAIARHIVRNHVGRIWVESPVPGQIEGSAFRFTL 590


>gi|189218781|ref|YP_001939422.1| Signal transduction histidine kinase with GAF domain
           [Methylacidiphilum infernorum V4]
 gi|189185639|gb|ACD82824.1| Signal transduction histidine kinase with GAF domain
           [Methylacidiphilum infernorum V4]
          Length = 513

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 70/230 (30%), Gaps = 19/230 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLI 53
           +          L++L  L + I H+I +P+  IH  +  L            + EV++  
Sbjct: 282 QTEENLREGERLLSLGLLAAEIAHEIRNPLTVIHMLIHSLKSRIQCDPVSQKDLEVLEKK 341

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEK 108
            +     + ++  +  A         +  + +   ++       ++++V         + 
Sbjct: 342 MVQMNRIVDQVLVLGKAPQPLLESLRVEEIIEDVLLLSRHKLAGQKIEVQTAIAPSLPKI 401

Query: 109 IDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                +  + +LNL +    ++           I   +++      +K +G      E  
Sbjct: 402 KAERAQVEQAILNLILNGVQAMKEGGRLEISAEIEDNETEPYLAIRVKDSGPGMSKAE-M 460

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++    +        +    V  +   ++ ++            S L  
Sbjct: 461 EELFVPFLTRKKQGTGLGLAIVQKIMENHRGKVKVSSTLGEGSTFSLLFP 510


>gi|170767668|ref|ZP_02902121.1| sensor protein KdpD [Escherichia albertii TW07627]
 gi|170123156|gb|EDS92087.1| sensor protein KdpD [Escherichia albertii TW07627]
          Length = 894

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
              +  +     ++L+NL   A        K+ I    + +     +  NG         
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAKIGIDAHVAGDRLQLDVWDNGPGIPQGKEQ 827

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|168178453|ref|ZP_02613117.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182670879|gb|EDT82853.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 451

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K++      +     +   L S I H+I +P+  + N+LE + +    + +E +  + 
Sbjct: 213 LRKSVNILAEKLKHQDSIRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272

Query: 55  LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101
              +     L  + +            F      + +  +            I +   ++
Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQKIFLDELIADICSDFYAIAENKNIKLQYHIE 332

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A      GG+V I +  S    +  +K NG   +  
Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392

Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F ++  G+        + I    V  +   +   +  E  +           +
Sbjct: 393 DLPFIFERLYRGDKSRHQFKGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKVYFHR 450


>gi|148379026|ref|YP_001253567.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|153932588|ref|YP_001383408.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153936711|ref|YP_001386956.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|153938603|ref|YP_001390393.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|148288510|emb|CAL82589.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928632|gb|ABS34132.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152932625|gb|ABS38124.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|152934499|gb|ABS39997.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295318480|gb|ADF98857.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 451

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K++      +     +   L S I H+I +P+  + N+LE + +    + +E +  + 
Sbjct: 213 LRKSVNILAEKLKHQDSIRRRLVSDISHEIRTPLNVLQNNLEAMIDGVLPVTEERLNCLN 272

Query: 55  LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101
              +     L  + +            F      + +  +            I +   ++
Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQKIFLDELIADICSDFYAIAENKNIKLQYHIE 332

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A      GG+V I +  S    +  +K NG   +  
Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392

Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F ++  G+        + I    V  +   +   +  E  +           +
Sbjct: 393 DLPFIFERLYRGDKSRHQFKGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKVYFHR 450


>gi|156742867|ref|YP_001432996.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156234195|gb|ABU58978.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 576

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 65/240 (27%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+       S    ALL   + HD+ +P+ A+   LELL    + +    LI  +  + 
Sbjct: 336 LAQLDELLRRSERNTALLAQMVIHDLKNPLTALIGFLELLSAADLSESQRSLIDSALRNG 395

Query: 61  IIRLK------FMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEK 108
                       +         +        +             +   K + +  +   
Sbjct: 396 RDLAGLVDDLLDLIRYNEGRLRLRLGDVSLPVLCAECADELAGWLLYESKTLILDVSPTL 455

Query: 109 IDLSRERA---KILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLKINGNLARF 160
             +  +     +ILLNL   A    PRG             D   + +  +   G     
Sbjct: 456 PLIRADARILKRILLNLLSNAIKHTPRGTLITLRVWREPHPDRGEQTVIEVADTGPGI-P 514

Query: 161 PEKFTQIVDGNVES------TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE+  ++ +    +         S  +   +  +    +   +               L 
Sbjct: 515 PERIERLFEPFGAAGESRSLRQSSTGLGLAFCKMAVTAHGGTIEVSSFPGDGATFRIRLP 574


>gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
 gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
          Length = 1136

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 62/237 (26%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRL 55
            KN      +  +     +   H++ +P+  I   LE L+   +      +   ++LI  
Sbjct: 423 EKNAKLE-EADRMKDRFLANTSHELRTPLNGIIGILETLEGGAMGDMLPAQASQLRLITF 481

Query: 56  SSMSAIIRLKFMRLAFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQV----S 103
           S+      +  +   +             VD    L ++ Q+++    VD          
Sbjct: 482 SARRLSRLVDDLLDIYRIREGRMRLDLQPVDVAHALRNVLQLLQPTFQVDPAKFHLDLPE 541

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +IL NL   A            + + +  +   +++ +G      + 
Sbjct: 542 DLPAVTADPVRFEQILFNLLSNAVKYGGGSEVHITAERRASGQMALAIRDHGPGI-AADS 600

Query: 164 FTQIVDG------NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I                   +       LA      +              LL 
Sbjct: 601 MERIFHPLEQLMPEGSGQATGTGLGLTIARHLADLMSGSIEVSSTPGEGSEFRVLLP 657


>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
 gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
          Length = 1618

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 63/240 (26%), Gaps = 29/240 (12%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            +AK +    +++   +   + + H+I +P+ AI     L  + G+       +     + 
Sbjct: 861  LAKELAEETTALK--SNFLANMSHEIRTPMNAIIGMSHLALKSGLNPRQHDYVSKIQQAG 918

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSW 104
               L  +     ++      + +     V++  +                 +   V    
Sbjct: 919  QHLLGVINDILDFSKIEAGKLTVEKHPFVLDRMLEGVADVVGYKAGAKGLELVCDVAADV 978

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARF 160
                +  S    +IL+N    A     RG              +    F ++  G     
Sbjct: 979  PPNLVGDSLRLGQILINFSNNAIKFTERGEISIAVRVQEQDAQRVRLRFEVRDTGIGL-T 1037

Query: 161  PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            PE+  ++ +                 +       LA      +  +            L 
Sbjct: 1038 PEQMGRLFESFQQADASTTRRYGGTGLGLAICKSLAELMGGEVGVDSEYGKGSTFWVSLP 1097


>gi|254492357|ref|ZP_05105529.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxidans DMS010]
 gi|224462249|gb|EEF78526.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Methylophaga thiooxydans DMS010]
          Length = 557

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 58/243 (23%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +      ++ D      + + H++ +P+  I   L++L +  ++   +  + L+S SA
Sbjct: 163 MRRTTEKAEAANDAKTTFLANMTHELRTPMSGIIGILDILGQSTLDKAQLNQVSLASKSA 222

Query: 61  IIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              L  +                        +    + +   + +        +   W  
Sbjct: 223 NQMLSVINDILDFSKIDADKVTVNHEAFNLYEVFSSVIETFALHQQSQKKKFILNCQWDK 282

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF 160
                       ++L NL   A      G          +          +   G     
Sbjct: 283 TLNVNGDPMRLRQVLFNLLSNADKFTTNGEVAVTAKVFDIDAENIRINCDVSDTGIGIEQ 342

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA--L 212
            +   ++                   +       L       +  E    H         
Sbjct: 343 DQL-ERLFIPFEQLDNASSRKYGGTGLGLVISQRLCELMGGSISVESKLGHGSTFRFFIT 401

Query: 213 LEK 215
           L+K
Sbjct: 402 LQK 404


>gi|220908073|ref|YP_002483384.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
 gi|219864684|gb|ACL45023.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7425]
          Length = 1305

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 63/251 (25%), Gaps = 40/251 (15%)

Query: 1   MAKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           +       L++    A +         + + H+I +P+ A+     LL +  +  E    
Sbjct: 597 LLTRQNEELTAAKHAAEVANAAKSNFLAIVSHEIRTPMNAVIGMSGLLLDTCLTPEQFDY 656

Query: 53  IRLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVD---- 97
           +     S+   L  +     ++              D  I + +   ++    A      
Sbjct: 657 VETIRNSSDTLLTIINDILDFSKIESGKLELEEQPFDLRICIEEALDLLAPQAASKGLDL 716

Query: 98  -KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR---------GGKVTISVQDSKNEN 147
              +      + I       +IL NL   A                         S  E 
Sbjct: 717 VYFIDPHLPTQIIGDITRLRQILWNLLSNAVKFTAMGEVVISVQGRELEFYPPFISTYEI 776

Query: 148 IFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEI 201
            F+++  G      E+  ++          +        +       L+   + R+    
Sbjct: 777 QFAVQDTGVGI-AREQMERLFKPFSQGDASMTRRYGGTGLGLAISKRLSELMRGRMWVAS 835

Query: 202 IDDHNVVLSAL 212
            +         
Sbjct: 836 QEGKGSTFYFT 846


>gi|169633327|ref|YP_001707063.1| sensory kinase (soluble) in two-component regulatory system
           [Acinetobacter baumannii SDF]
 gi|169152119|emb|CAP01018.1| sensory kinase (soluble) in two-component regulatory system
           [Acinetobacter baumannii]
          Length = 369

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +    +   L   + H+I +P+  I  + +LL     ++   +   +       
Sbjct: 126 SKEENLIQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLNDESYAEFTDIIINEVDR 185

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                    G         V+    L  +  +I +      ++   +     D+  +R +
Sbjct: 186 LTNLADTMLGSRQLPSYENVNVHEPLERVRSLIANQTKKKIKITRDYDLSLPDVKADRDQ 245

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNE---------------------NIFSLKINGN 156
           ++  +  ++  ++    +      D + E                         ++ NG 
Sbjct: 246 LIQVMLNISVNAIQAITENKSFFTDQEPELILRTRIQRLVTINGVLNRSAVRVDIEDNGP 305

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V        +       + H++   +  + +     + S  L 
Sbjct: 306 GIPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGK-TMFSLYLP 361


>gi|167753243|ref|ZP_02425370.1| hypothetical protein ALIPUT_01515 [Alistipes putredinis DSM 17216]
 gi|167659174|gb|EDS03304.1| hypothetical protein ALIPUT_01515 [Alistipes putredinis DSM 17216]
          Length = 349

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 62/220 (28%), Gaps = 25/220 (11%)

Query: 21  RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            + H++ +PI  I   +  L     ++  I  + ++    S    I  +  +        
Sbjct: 123 NVAHELKTPIFNIQGYISTLLDGGLEDDLINRKYLERAEKSIDRLIDIVNDLDTISKLES 182

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS---------------WTGEKIDLSRERAKILL 120
           ++  L         +   IA    ++                              ++L+
Sbjct: 183 NMTRLKMESFDIAAMTREIAEQAEIEADKKGIKIQVRGADSLPSPFWVCADKHFVGQVLV 242

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           NL + +      GG   I  +D  ++ +  ++ NG      +    F +    +      
Sbjct: 243 NLIINSIRYGKEGGVTRIKFRDMLDKILVEVEDNGVGIAKEDVPRIFERFYRTDKGRSRE 302

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    V  +   +  R+            S  L+K
Sbjct: 303 QGGTGLGLAIVKHIIEAHGERINVRSELGVGTTFSFTLKK 342


>gi|149911169|ref|ZP_01899794.1| putative two-component sensor [Moritella sp. PE36]
 gi|149805770|gb|EDM65767.1| putative two-component sensor [Moritella sp. PE36]
          Length = 544

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 63/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +L  + I H+I +P+  I   ++LL +  + ++ ++++   +  +
Sbjct: 157 LQNEKAILEESNKLKSLFLATISHEIRTPMNGILGIVQLLKDTPLNNQQVEMLDTITNRS 216

Query: 61  IIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
              +  +     Y+                       +++           +  ++    
Sbjct: 217 DDLITILNDILDYSQLETGKVALNEVDFNVIESVEDVVKRFSAAAHLKGLSITTAFDNST 276

Query: 109 IDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARF 160
             + +       +IL NL   A      G    I   +       +    +K  G     
Sbjct: 277 PVIFKGDVERIKQILSNLVHNAVKFTQVGEINIIVNFEETATSFYQVNIIVKDTGIGISK 336

Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +            ++  T     +       L       +  E  +         + 
Sbjct: 337 IAQKNLFQPFTQADNSMSRTFGGTGLGLAISANLTKAMNGTISVESEELKGTAFLLSIP 395


>gi|42781026|ref|NP_978273.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
 gi|42736947|gb|AAS40881.1| sensor histidine kinase, putative [Bacillus cereus ATCC 10987]
          Length = 355

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 113 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHSNGEECEQYVS 172

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++ ++E  +           +   +
Sbjct: 173 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCI 232

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I V          +K  G     
Sbjct: 233 KGDKELHVEMDVALMVRLFENVISNSIMYGKDGKEIVIQVSKRDMNVEIEIKNFGQCIPD 292

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     +    V +  L 
Sbjct: 293 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIALP 350


>gi|50123027|ref|YP_052194.1| osmolarity sensor protein [Pectobacterium atrosepticum SCRI1043]
 gi|49613553|emb|CAG77004.1| two-component osmolarity sensor protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 452

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 216 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMGKEDDYLAESINKDIEE 275

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    +G++      +         +        S  
Sbjct: 276 CNAIIEQFLDYLRTGQEMQTEVADLNAIMGEVVASESGYERQIDSEFATGELLVRISSLS 335

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN 171
             +  LNL + A        KV+   +       F ++ +G      +    F   V G+
Sbjct: 336 IKRAALNLVVNATRYGNGWIKVSTGRELQ--RIWFQVEDDGEGIAADQLQHLFQPFVRGD 393

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T     +    V  +   +   L     +   + + A L 
Sbjct: 394 SARTTSGTGLGLAIVQRIIDAHNGVLDVGTSERGGLCVRAYLP 436


>gi|77409121|ref|ZP_00785835.1| sensor histidine kinase [Streptococcus agalactiae COH1]
 gi|77172249|gb|EAO75404.1| sensor histidine kinase [Streptococcus agalactiae COH1]
          Length = 551

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 72/230 (31%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAII 62
           ++   L    L     + + H++ +P+  I    ELL    + +E + Q        +  
Sbjct: 321 DVTDQLQMEQLQREFTANVSHELKTPLHVISGYSELLANQMVPNEEVPQFAAKIHKESER 380

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117
            +K +      +   +      +   + +    V + +Q     + I ++    +     
Sbjct: 381 LVKLVEDIINLSHLDEQEKLPQETVNLYDLTQKVLEGLQAKADKKHIQINFNGEEAILRG 440

Query: 118 -------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                  ++ NL   A       G+V +++++S +     +   G      +    F + 
Sbjct: 441 NPVLLNSLVYNLCDNAITYNHEKGQVNVTLKNSPDTITLEVSDTGLGIAEKDKKRIFERF 500

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +  +    +    V      +   +  +        ++ LL K
Sbjct: 501 YRVDKSRSKIVGGTGLGLSIVKSALDFHNGSIKVDSHLGQGTTMTVLLHK 550


>gi|313682762|ref|YP_004060500.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
 gi|313155622|gb|ADR34300.1| multi-sensor hybrid histidine kinase [Sulfuricurvum kujiense DSM
           16994]
          Length = 977

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 56/217 (25%), Gaps = 24/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG---- 75
           + + H+I +P+  I    EL+ +  +E +    +  S++S+   L  +     Y+     
Sbjct: 401 ANMSHEIRTPLNGIIGLTELVLKTDLEPKQRDFLEKSNLSSHALLDIINDILDYSKIEAG 460

Query: 76  -------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----ERAKILLNLFM 124
                    +    + +I  + E        +         ++         +IL NL  
Sbjct: 461 KFDLENKPFELNNVIQNIMSLFEFQAVQKGIILTYDIQLNENVMIGDALRLTQILTNLVG 520

Query: 125 VAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----EST 175
            A      G            +      FS++  G       +     + +         
Sbjct: 521 NAVKFTESGHIGIRVISTDENEEDIRLQFSVEDTGIGMNAEAQNKLFQEFSQADTSITRK 580

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                +       L       +  E  +         
Sbjct: 581 YGGSGLGLAISKQLVQMMGGDIWVESEEGIGSRFIFT 617


>gi|312951634|ref|ZP_07770529.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|310630351|gb|EFQ13634.1| PAS domain S-box [Enterococcus faecalis TX0102]
 gi|315152345|gb|EFT96361.1| PAS domain S-box [Enterococcus faecalis TX0031]
 gi|315158212|gb|EFU02229.1| PAS domain S-box [Enterococcus faecalis TX0312]
 gi|323480863|gb|ADX80302.1| two-component sensor histidine kinase, PhoK [Enterococcus faecalis
           62]
          Length = 591

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A     + G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQKNGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|298481842|ref|ZP_07000032.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298272064|gb|EFI13635.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 785

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 57/221 (25%), Gaps = 18/221 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI    +LL      +E      + + ++ I L+    
Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPAAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    +  + +                           
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVKEGVTLVFDNEDENLFIEGDQNRI 539

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173
            +++ N    A       G++ +  + +       +K  G     PEK   I +  V   
Sbjct: 540 MQVITNFLTNASKFT-YAGEIRLGFERTDKNIRVYVKDTGIGI-EPEKVDHIFERFVKLN 597

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +      ++  +    +               + 
Sbjct: 598 SFAQGTGLGLSICQMIIEKIGGEIGVTSELGKGSTFYFTIP 638


>gi|295087809|emb|CBK69332.1| PAS domain S-box [Bacteroides xylanisolvens XB1A]
          Length = 785

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 57/221 (25%), Gaps = 18/221 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI    +LL      +E      + + ++ I L+    
Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPAAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    +  + +                           
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVKEGVTLVFDNEDENLFIEGDQNRI 539

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173
            +++ N    A       G++ +  + +       +K  G     PEK   I +  V   
Sbjct: 540 MQVITNFLTNASKFT-YAGEIRLGFERTDKNIRVYVKDTGIGI-EPEKVDHIFERFVKLN 597

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +      ++  +    +               + 
Sbjct: 598 SFAQGTGLGLSICQMIIEKIGGEIGVTSELGKGSTFYFTIP 638


>gi|291618164|ref|YP_003520906.1| RcsC [Pantoea ananatis LMG 20103]
 gi|291153194|gb|ADD77778.1| RcsC [Pantoea ananatis LMG 20103]
          Length = 949

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 64/240 (26%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L+LL    +   +  L+   
Sbjct: 452 MEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTRQLPSGIDSLVTAM 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +        + I                     +
Sbjct: 512 NNSSSLLLKIISDILDFSKIESEQLKIEPRPFSPREVITHIVGNYLSLVVKKRLTLYCYI 571

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A      G  +  +          + +  G     
Sbjct: 572 EHDVPQALDGDPLRLQQVISNLLNNAIKFTHTGCIILHAYVTQGYLAFRT-RDTGVGIPA 630

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  E            + 
Sbjct: 631 KELT-RLFDPFFQVGNGVQRNFQGTGLGLAICEKLINMMDGDIEVESEPGMGSQFIVRIP 689


>gi|302409538|ref|XP_003002603.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
 gi|261358636|gb|EEY21064.1| ethylene receptor [Verticillium albo-atrum VaMs.102]
          Length = 1373

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 64/230 (27%), Gaps = 29/230 (12%)

Query: 13   DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             L +   + + H+I +PI  +    ELL ++ ++ E  + +     SA   L  +     
Sbjct: 791  RLKSQFLANMSHEIRTPITGVIGMAELLQDMKLDSEQREYVENIQRSANALLTVINDILD 850

Query: 73   YTG------------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            ++                     D    L    +  +     D   +++     I     
Sbjct: 851  FSKVESGRLDIEEVQFSLSVVLKDVSKMLSFAAERKDLAFLSDVSREITNDMVVIGDPGR 910

Query: 115  RAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDG 170
              +I+ NL   +     +G       ++ +        F+++  G      E   ++   
Sbjct: 911  VRQIVTNLLTNSIKFTNQGHVKFSVKKEKETHDSVIIRFTIEDTGIGI-EEEVRKKLFQP 969

Query: 171  N------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       L    + ++  E    +    +  + 
Sbjct: 970  FSQGDASTARRFGGTGLGLTICKNLLELMRGKITLESDLGNGTTATFWIP 1019


>gi|255972660|ref|ZP_05423246.1| predicted protein [Enterococcus faecalis T1]
 gi|255963678|gb|EET96154.1| predicted protein [Enterococcus faecalis T1]
          Length = 506

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 276 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 335

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 336 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 395

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A     + G++TIS      +   S++  G      +   +I +     
Sbjct: 396 FYPIVKNLIENAIQYSQKNGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 454

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 455 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 500


>gi|237715073|ref|ZP_04545554.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262408978|ref|ZP_06085523.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
 gi|229444906|gb|EEO50697.1| two-component system sensor histidine kinase [Bacteroides sp. D1]
 gi|262353189|gb|EEZ02284.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_22]
          Length = 785

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 57/221 (25%), Gaps = 18/221 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK---- 65
            S  L +   + + H+I +P+ AI    +LL      +E      + + ++ I L+    
Sbjct: 420 QSDRLKSAFLANMSHEIRTPLNAIVGFSQLLPAAETAEEKKLYSGIINQNSDILLQLIND 479

Query: 66  ----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                      +          +    +  + +                           
Sbjct: 480 ILDLSKIEAGTLEYIKRPMNLGEVCRTIYAVHKERVKEGVTLVFDNEDENLFIEGDQNRI 539

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--E 173
            +++ N    A       G++ +  + +       +K  G     PEK   I +  V   
Sbjct: 540 MQVITNFLTNASKFT-YAGEIRLGFERTDKNIRVYVKDTGIGI-EPEKVDHIFERFVKLN 597

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +      ++  +    +               + 
Sbjct: 598 SFAQGTGLGLSICQMIIEKIGGEIGVTSELGKGSTFYFTIP 638


>gi|229549876|ref|ZP_04438601.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200]
 gi|229304949|gb|EEN70945.1| sensor histidine kinase [Enterococcus faecalis ATCC 29200]
          Length = 591

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 61/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A     + G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQKNGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|228907030|ref|ZP_04070895.1| hypothetical protein bthur0013_12040 [Bacillus thuringiensis IBL
           200]
 gi|228852621|gb|EEM97410.1| hypothetical protein bthur0013_12040 [Bacillus thuringiensis IBL
           200]
          Length = 463

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 241 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 300

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 301 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 360

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 361 NAIRYTNQNGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 420

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   E   D    +   L
Sbjct: 421 GLGLAIVRQIVHIHGGQWQIESEKDTGTTVIIKL 454


>gi|228966133|ref|ZP_04127196.1| hypothetical protein bthur0004_29490 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228793618|gb|EEM41158.1| hypothetical protein bthur0004_29490 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 436

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQKNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D  + +  
Sbjct: 256 SRKISTLISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASIDITINIEK 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|227810119|ref|ZP_03989032.1| two-component system sensor histidine kinase [Acidaminococcus sp.
           D21]
 gi|226904699|gb|EEH90617.1| two-component system sensor histidine kinase [Acidaminococcus sp.
           D21]
          Length = 545

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 16/235 (6%), Positives = 58/235 (24%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + + +        L     + + H++  PI  I    + + +          +  +LI  
Sbjct: 277 LEQFVLKTNKMEKLRRDFVANVSHELRMPITIIQGYNQAILDGTVTDPDDIKKYRKLIDN 336

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD----------IEQVIEDFIAVDKRVQVSWT 105
            +      +  +          +  +              + +V      +     +   
Sbjct: 337 ETQRLERLINELLEISRLQRKENEEMEPVPLGEITENVVSMMEVRAQKRDIRLERYLDDN 396

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPE-- 162
              +       ++++ L   A    P    +   V  S+    + ++  +G      +  
Sbjct: 397 LMVMGNGDRLFQLVMILGDNAMKYSPDSSSIVFQVLPSRTGGAVLTVTDHGYGIPQEDLP 456

Query: 163 -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +      I    +       +   +K ++  +              
Sbjct: 457 YIWERFYKVDKSHSRHIPGTGLGLAIAKEIIRIHKAKVQVQSEVGKGTTFMITFP 511


>gi|221207869|ref|ZP_03580876.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221172366|gb|EEE04806.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
          Length = 751

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 21/230 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
               +S  L   L + + H++ +P+  I+  +E+L   G +   +Q I     SA    +
Sbjct: 369 EQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTLRVQAIDAIDRSARSLTR 428

Query: 66  FMRLAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
            +      +             +  +     V+  F        ++   E    +     
Sbjct: 429 MVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFESRVATCIVSG 488

Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++L NL   A    P GG VT+SV       + ++   G               
Sbjct: 489 DAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAPEFVPHVFDMF 548

Query: 171 NVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                          +    V  +   +   ++ +    +     +  L 
Sbjct: 549 RRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 598


>gi|205372168|ref|ZP_03224983.1| putative sensor-like histidine kinase yclK [Bacillus coahuilensis
           m4-4]
          Length = 451

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 68/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSM-DLVAL---LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +AK+     + +  L  +     S + HD+ SP+ +I      L E       +   + +
Sbjct: 213 LAKSFNVMTAELTKLETMRKEFISNVSHDLQSPLTSIRGFAVALKENEFSKEQQHHYLTI 272

Query: 53  IRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I+  S                      +          +  +    Q       ++  ++
Sbjct: 273 IQKESERLAKLSENLLKLSVLENMDSLVEKETYRLDQQIREVFLSHQPQWLEKELELDLE 332

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                E      +  ++  NL   +     +GG + + V++ + E        G      
Sbjct: 333 GIQMVEIHADRLQLEQVWHNLLTNSIKYSNKGGNIKVDVKEVQGEVHVEFSDTGIGIGEK 392

Query: 162 E---KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +   T       +    V  +   +   +L +        +  +L K
Sbjct: 393 DLPHIFDRFYMVDKARTPTRQGSGLGLAIVKKIIDIHGGDILIKSNLGKGTSVHIVLPK 451


>gi|167577648|ref|ZP_02370522.1| sensory box histidine kinase [Burkholderia thailandensis TXDOH]
          Length = 709

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 64/232 (27%), Gaps = 23/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           + +  +   ++  A + S   HD+  P+ A+   L+LL          +           
Sbjct: 475 EELARSNQDLEQFAYVAS---HDLQEPLRAVAGPLQLLQRRYQGQLDARADEFIGHAVDG 531

Query: 59  --SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  +  +          D+   +     + E    +   ++ S      D      
Sbjct: 532 ATRMQSLIDDLLSYSRVGRLEDARQPVDCERVLDEALRNLSAAIRESGAQITHDRLPIVH 591

Query: 117 ----KILLNLFMVAHASLPRGGKVTISVQD-----SKNENIFSLKINGNLARFPEKFTQI 167
               +++L    +   ++    K  I+          +  +F ++ NG     P+ F +I
Sbjct: 592 GIAAQLVLLFQNLIGNAIKFRSKDRIARIHLEADTRDDAWVFRVRDNGIGI-DPQYFERI 650

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                            +       +   +  R++ E         S  L +
Sbjct: 651 FLIFQRLHTRREYPGTGLGLALCKRIVEHHGGRIVVESEPGRGTTFSFALSR 702


>gi|158424711|ref|YP_001526003.1| nitrogen regulation protein [Azorhizobium caulinodans ORS 571]
 gi|158331600|dbj|BAF89085.1| nitrogen regulation protein [Azorhizobium caulinodans ORS 571]
          Length = 374

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 57/229 (24%), Gaps = 27/229 (11%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRL 64
           +   V+ L S + H+I +P+  I  + +LL+      +  +   +               
Sbjct: 137 AARSVSALASMLAHEIKNPLSGIRGAAQLLEQSAGDEDRALTRLICDEADRIVKLVDRME 196

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            F          V+    L  +  +     A   R    +      +   R +++     
Sbjct: 197 VFSDERPVEREPVNIHAVLEHVRTLASSGFARHIRFIEDYDPSLPPVYANRDQLIQVFLN 256

Query: 125 VAHASLPRGGKVTISVQD-------------------SKNENIFSLKINGNLARFPEKFT 165
           +   +       T                              F ++ NG      +   
Sbjct: 257 LVKNAAEAIDSETDGEIHLTTAFRPGVRLTVPGASSKVSLPLEFCVRDNGKGV-PEDLVQ 315

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  V +      +    V  +  ++   +  +           LL 
Sbjct: 316 HLFDPFVTTKPTGSGLGLALVAKIIGDHGGIVECDSQP-RRTTFRVLLP 363


>gi|118590589|ref|ZP_01547991.1| two-component sensor histidine kinase ExoS [Stappia aggregata IAM
           12614]
 gi|118437052|gb|EAV43691.1| two-component sensor histidine kinase ExoS [Stappia aggregata IAM
           12614]
          Length = 605

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 70/248 (28%), Gaps = 38/248 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + +++      + + H++ +P+ ++ +++E L        +D +M++I+   
Sbjct: 357 MTHALYNKIDAIE---QFAADVAHELKNPLTSLRSAVETLPLAKSKNSQDRLMEVIQHDV 413

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQ 101
                 +  +          A      +D    L ++          ++          Q
Sbjct: 414 RRLDRLISDISDASRLDAELARIQAEPIDLAELLRNMADAANQRSGAEEASVKLAVADAQ 473

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +   +         +++ NL   A +  P GG V + +          +  +G      
Sbjct: 474 GTKPYQMQGHDIRLGQVVSNLLDNARSFSPAGGTVRVDLSRDGRMIKIIVDDDGPGI-RA 532

Query: 162 EKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEII--DDH-------N 206
           E   +I +       D         +       +   +   ++                 
Sbjct: 533 ENTERIFERFYTDRPDGEGFGNNSGLGLSISRQIIEAHGGTIVATNRLVPGKDGKQKIAG 592

Query: 207 VVLSALLE 214
              +  L 
Sbjct: 593 ARFTIYLP 600


>gi|146307980|ref|YP_001188445.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
 gi|145576181|gb|ABP85713.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina ymp]
          Length = 914

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 57/224 (25%), Gaps = 25/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   +++ H+I +P+  +   L+LL E  ++      +   S S    +  +     Y  
Sbjct: 409 SRFLAKMSHEIRTPLNGVLGMLQLLRETPLDRSQRFYVDTISSSGSSLMAVINDILDYAR 468

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WTGEKIDLSRERAKIL 119
                + L  IE  +ED I+    +                                ++L
Sbjct: 469 IESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLYVSLEGGVPRRIQGDPTRLKQVL 528

Query: 120 LNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           +NL   A      G         S    +   +F++  +G                    
Sbjct: 529 MNLLSNALKFTAEGHVAVSVSRRSDSHGQPHLVFAVSDSGIGISEQALAKLFESFAQGDS 588

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       L      R+  +         +  + 
Sbjct: 589 STTRRYGGSGLGLAISKELVEMMGGRIEVQSTPGQGTRFAFDIP 632


>gi|159897671|ref|YP_001543918.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890710|gb|ABX03790.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 631

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 59/249 (23%), Gaps = 37/249 (14%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEV--GIEDEVMQ 51
            K +   L      A           + + H++ +P+ AI    ELL +     +  +++
Sbjct: 377 RKQVEEALRHARDAAEAANHAKSTFLANMSHELRTPLNAIIGYSELLMDDTDFDDPTMVE 436

Query: 52  LIRLSSMSAIIRLKFMRL---------------AFGYTGSVDSLIGLGDIEQVIEDFIAV 96
             R            +                       + D    + D+   I      
Sbjct: 437 QFRHDIAQINDAGHQLLNLVNDVLDLAKVEAGKYQVAAETFDLNSLVRDLIATINPMAQK 496

Query: 97  DKRVQVSWTGEK----IDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSL 151
           +         +             +ILLNL   A          +++S   +       +
Sbjct: 497 NANSLYFEPNKHLPLIHTDRSMLRQILLNLLSNAAKFTKAGSINISVSFDPASQHVQCRV 556

Query: 152 KINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
           +  G      E+  ++ +                 +               +  E +   
Sbjct: 557 RDTGIGMN-DEQMQRLFEPFTQGDASTTRRYGGTGLGLALCRHFIELLNGSIQVESVFGQ 615

Query: 206 NVVLSALLE 214
             + + +  
Sbjct: 616 GSIFTIVFP 624


>gi|94970041|ref|YP_592089.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552091|gb|ABF42015.1| multi-sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1132

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 62/243 (25%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M +        M+ V  L   + HD  + +  I    E+L        +    ++ I  +
Sbjct: 746 MLEQQLRQSQKMEAVGRLAGGVAHDFNNLLTVIRGYTEILLSDLPPGDVRRAELEEIMKA 805

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKI 109
           S  A    + +            ++ L  I Q + + +       +              
Sbjct: 806 SDRAGSLTRQLLAFSRQQVLAPKVLNLNTIVQNMHNLLRRLLGEDIDLQTVLDPEIGHVK 865

Query: 110 DLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKIN 154
               +  ++L+NL + A  ++P                     I         + ++  +
Sbjct: 866 ADPSQIEQVLMNLAVNARDAMPMGGRLTIETTNVELTENWSRDIISAKPGPYVMIAMTDS 925

Query: 155 GNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          ++ +    +        +       +  ++   +               
Sbjct: 926 GAGM-DEATKARVFEPFFTTKEQGKGTGLGLSTAYGIVKQSDGYISVYSEVGIGSTFKVY 984

Query: 213 LEK 215
           L +
Sbjct: 985 LPR 987


>gi|99078407|ref|YP_611665.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
 gi|99035545|gb|ABF62403.1| PAS/PAC sensor hybrid histidine kinase [Ruegeria sp. TM1040]
          Length = 756

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 57/244 (23%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L    L A           + + H+  +P+  +    ++L    + ++     
Sbjct: 358 TKEYERQLKEARLAAEEGARIKEEFLATMSHEFRTPMNGVIGMAQMLQATDLSEDQRLYT 417

Query: 54  RLSSMSAIIRL-------KFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVD 97
                S+   L           +        +    L             Q  E  + + 
Sbjct: 418 DTILGSSRALLALINDVLDLSHMNAAGVSLFNVDFDLHACVGDIVRLLSGQADEKHLELS 477

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKIN 154
             +            R   +IL+NL   A           ++   V   +      ++  
Sbjct: 478 VEIDPDVPVWVTGDDRRLRQILVNLLGNAVKFTTSGSIFIRLRGVVTGDQVALKIEVEDT 537

Query: 155 GNLARFPE---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      +    F +    +           +       LA      +    ++      
Sbjct: 538 GIGIPADKLEKIFERFSQADNAISRKYGGSGLGLSISRGLAQAMGGDIDVTSVEGEGACF 597

Query: 210 SALL 213
           + +L
Sbjct: 598 TLML 601


>gi|294054697|ref|YP_003548355.1| integral membrane sensor signal transduction histidine kinase
           [Coraliomargarita akajimensis DSM 45221]
 gi|293614030|gb|ADE54185.1| integral membrane sensor signal transduction histidine kinase
           [Coraliomargarita akajimensis DSM 45221]
          Length = 593

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 71/238 (29%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++     S+    +   + + H+  +P+ +I     LL++  +++   + +     S+
Sbjct: 341 LKRSRDLAESADRTKSRFLTNMSHETRTPLHSISGYASLLEDTDLDEVQRESVEEIRQSS 400

Query: 61  IIRLKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
               + +      +                    +++I    ++    Q+ ++ +  +  
Sbjct: 401 DRLEQLLSDIIELSSLEKHELYATKAQIDLHAFEDELIAAAESLCADKQIDFSAQLCENC 460

Query: 113 RER--------AKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFP 161
            +          ++LL+L   A           +     Q+S    IF ++  G      
Sbjct: 461 PKSVFTDYAYLRRVLLHLIENAVKFTREGSVVFRTQFYPQESAYRLIFEIEDTGIGIHSD 520

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   ++ D           + +   +       +A      L  E       +    L
Sbjct: 521 EL-ERVFDPFYQSDDSDSRSHEGGGLGLAIARSVAEMLGGELTVESEPHQGSLFRLSL 577


>gi|228932000|ref|ZP_04094892.1| hypothetical protein bthur0009_4850 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827583|gb|EEM73325.1| hypothetical protein bthur0009_4850 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 392

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 64/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 170 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 229

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +   +  ++V      +       ++++
Sbjct: 230 RSDSNQIEMDKKIFELDKLLEEIVEPYKEIASYQEKEMILKVEHDISLMGDRERIHQMMV 289

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   +  
Sbjct: 290 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKGEDIPKLFDRFYQGDKARSAS 349

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 350 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 388


>gi|229051663|ref|ZP_04195132.1| hypothetical protein bcere0027_55660 [Bacillus cereus AH676]
 gi|228721696|gb|EEL73171.1| hypothetical protein bcere0027_55660 [Bacillus cereus AH676]
          Length = 436

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    +V+    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASVEITTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESKLGEGSTFTFKLP 431


>gi|217037911|gb|ACJ76427.1| hybrid sensor kinase RscS [Aliivibrio fischeri]
          Length = 943

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/229 (8%), Positives = 55/229 (24%), Gaps = 25/229 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF 66
           S    +   + + H++ +P+  I    ++++    +     ++  L+        +    
Sbjct: 407 SNKAKSTFLATMSHELRTPLNGILGMAQIIESNIKDEEQHKQIKVLLESGDHLLSLLNDI 466

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------------E 114
           +  +      ++          VI+        +      + I  +              
Sbjct: 467 LDFSKIEQNKLELNHASFYFNDVIDPIANTYLSICEDKGLQFIINNNINEKTIFLGDKPR 526

Query: 115 RAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD- 169
             +I+ NL   A     +G              +      ++  G   R           
Sbjct: 527 IRQIIFNLISNAVKFTHKGSITLNFSHTLTPKGEQAVQIKVQDTGIGIRKKRLKHIFEPF 586

Query: 170 ----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         +    V  L    K  +     +      + +L 
Sbjct: 587 IQAETSTTRQYGGTGLGLTIVKQLTDTMKGYISVNSSEGKGTCFTLVLP 635


>gi|158334651|ref|YP_001515823.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
 gi|158304892|gb|ABW26509.1| two-component sensor histidine kinase [Acaryochloris marina
           MBIC11017]
          Length = 504

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/216 (8%), Positives = 65/216 (30%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
               + H++ +P+  +   L+ +         ++ E +++    +   I  L+ +     
Sbjct: 282 FVGNVSHELRTPLTIVRGYLQSIQRRGDNLTEMQREALEISTAEANLTIQLLQDLLCLAR 341

Query: 70  ---AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123
               +        ++    +E V        +++ + +    I +  +     ++L+NL 
Sbjct: 342 ADDGYMPYHLETLILNDVAVEVVNMADKFNQRQIDLEFESPLIPVFADAKRLQQVLVNLV 401

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178
             A         VT+ ++  ++  +  +   G+     +    F +    +         
Sbjct: 402 ENAIKYSATTEPVTVKLEQREDSALIHVCDRGDGIPLKQQSRIFERFYRLDEARARCTGG 461

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V         ++     +      +  L 
Sbjct: 462 VGLGLSLVKTFTEGMGGQVSVLSAEGEGSTFTVTLP 497


>gi|83643135|ref|YP_431570.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Hahella chejuensis KCTC 2396]
 gi|83631178|gb|ABC27145.1| Signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Hahella chejuensis KCTC 2396]
          Length = 395

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 58/245 (23%), Gaps = 41/245 (16%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAI-------HNSLELLDEVGIEDEVMQLIRLSSMSA 60
            +  L AL  L + + H+I +P+G I          L+ + +   E      ++      
Sbjct: 145 EAEKLSALGQLGAGVAHEINNPLGFIQSNLNSGKGYLQDISDALTEMSRGHDVKAIFSRY 204

Query: 61  ---------------------------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93
                                           F     G    V     +  +  + +  
Sbjct: 205 ELDFVIKDLHILMSDTLDGVARVAKIVKDLKGFAGTDGGSRQKVAMEELMESVCNLAKPL 264

Query: 94  IAVDKRVQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
           +     ++  +              + +  + + A  ++   G+V +      +     +
Sbjct: 265 MGGHIHLRKEYEPTPSVWVDYSAFCQAVYAIMLNAVQAIGERGEVLVQCGPGASGVRIVI 324

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           +  G      E   +I +    +        +       +   +   +            
Sbjct: 325 EDTGCGM-DAETLNRIFEPFFTTKPVGSGTGLGMTLCRDIIRAHGGEIHVASEPGKGSRF 383

Query: 210 SALLE 214
              L 
Sbjct: 384 CIELP 388


>gi|86145026|ref|ZP_01063358.1| hypothetical protein MED222_11453 [Vibrio sp. MED222]
 gi|85837925|gb|EAQ56037.1| hypothetical protein MED222_11453 [Vibrio sp. MED222]
          Length = 647

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELL---DEVGIEDEVMQ- 51
           +       + +  L AL  L   I H+I  P+ A+++   S +L          +E ++ 
Sbjct: 413 LRVTQDELIQAGKLAALGQLSVGITHEINQPLTAVNSHVRSAQLWLGKQRPDRAEENLKK 472

Query: 52  ---LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGE 107
              L+   +        F R + G   +V+    +GD   +       V  +        
Sbjct: 473 IEVLLDKVAAITRHLKAFSRKSDGKIDNVELNKVIGDAIDLFETRQSTVSIQYSPQSDQV 532

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFT 165
               +    ++L+NL   A  ++    +  +S+   ++       +  NG      +   
Sbjct: 533 VRANNIRLEQVLVNLISNALDAIEHREQPELSISTQEHSKTIQILVMDNGLGIPEEDIP- 591

Query: 166 QIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + D           +         +  +    +  E ++         L K
Sbjct: 592 HLFDPFYTRKTTGKGLGLGLSIAYNIIKDFGGSIHVESVEHQGTTFIVTLPK 643


>gi|114046931|ref|YP_737481.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           sp. MR-7]
 gi|113888373|gb|ABI42424.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           sp. MR-7]
          Length = 603

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 67/231 (29%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + +  L  +  L + I H++  P+ A+ +  +               + +++
Sbjct: 363 LKDTQDELIQAAKLTVIGSLSASINHELNQPLAALRSYAQNTQTFLARNMPDKASDNLKI 422

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSW 104
           I   +      +   +     +   DS   L    +     +  +   Q           
Sbjct: 423 IIELTDRLADIVGQFKSFTRKSQGTDSATDLKGCIKQALTIVQPEIDKQGVELDVLLPEG 482

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEK 163
             +         ++ +N+   A  ++ +  K T     + +++   S++ +G   R  + 
Sbjct: 483 QYQVWGDKVRLQQVFVNIMSNAIVAMQQSSKRTLSIRVNCQDKFCISIQDSGPGVRESQM 542

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S      +       +    + ++     +D   +   +L 
Sbjct: 543 EKIFEPYFTTSERTGLGLGLSISQRIIESMQGQINVANAEDGGAIFHIILP 593


>gi|110633234|ref|YP_673442.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110284218|gb|ABG62277.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 548

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 60/221 (27%), Gaps = 25/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + + + H++ +P+ AI    +LL          D+  + + +   +    L  +      
Sbjct: 294 MLASVSHELRTPLNAIVGFADLLANEMFGKFANDKQREYVEVIREAGTHLLSVVNAILDV 353

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------------WTGEKIDLSRERAKI 118
           +       G+       ED + +   +                    G          ++
Sbjct: 354 SKVQSGAYGVEAKPFHFEDAVRLCMAMTTHQAQAKSVELKADIAGDIGTVRCDKNAVQQV 413

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVE 173
           L+NL   A    P G  V ++   S +   F++   G      +          V  +  
Sbjct: 414 LINLLSNAVKFTPSGE-VKVTAHRSGDRLEFTVSDTGIGISAEDLELVGTPFMQVRNDYT 472

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +    V  L       L  E        +   L 
Sbjct: 473 RKCEGTGLGLALVKGLVRLQGGGLSIESAPGRGTRVHVSLP 513


>gi|308070350|ref|YP_003871955.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305859629|gb|ADM71417.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 747

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 64/250 (25%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLS---SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------- 50
           + +     L     + L+  L   I HD  + +  I    E++       E +       
Sbjct: 360 LLRKKDLQLQHSQKLQLIGTLSGEIAHDFNNFLTPIKGYAEIMLSSIEPTEEIYDYVSEI 419

Query: 51  -------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                  +LI    +                   + +     + +            +  
Sbjct: 420 YDASEKARLIIEEILLLSRLESGKVKKNAPVKVEEQVEEALGLIKSFLSPSVKAVFKKQV 479

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----------------EN 147
            +        +  +I++NL   A+ ++   G     + D+                    
Sbjct: 480 ESAVIFANKVQIHQIIMNLCNNAYQAMKTTGGELKIILDTMPLKEVKKIRESVLEVSDYV 539

Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH 205
             S+   G      E   +I D    +    +   +  Y V  +  +++  +  +     
Sbjct: 540 TLSVSDTGRGM-SDETLQKIFDPFFTTKPAGEGTGLGLYIVQSILEKHQGFIAVDSELGK 598

Query: 206 NVVLSALLEK 215
               +  L K
Sbjct: 599 GSTFTVYLPK 608


>gi|298482966|ref|ZP_07001148.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
 gi|298270938|gb|EFI12517.1| two-component system sensor histidine kinase [Bacteroides sp. D22]
          Length = 660

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 68/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  L +   + + H+I +P+ AI    +LL   ++   ++E +Q+I  ++
Sbjct: 280 LETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 339

Query: 58  MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +  +  +                 +  +V        + + + +       V    T
Sbjct: 340 ELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYET 399

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL N    A     +G       +   +     ++  G      +K  
Sbjct: 400 CTVRLDKNRLAQILTNFVTNAIKYTSKGTIEMGYEKIDGD-IRLYVRDTGIGI-PEDKKD 457

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++       +       +       +    +  +  E   D   +  A+L 
Sbjct: 458 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 508


>gi|295087981|emb|CBK69504.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 503

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 68/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           +         S  L +   + + H+I +P+ AI    +LL   ++   ++E +Q+I  ++
Sbjct: 123 LETARSRAEQSDKLKSAFLANMSHEIRTPLNAIVGFSDLLMVTEDQEEKEEFIQIINANN 182

Query: 58  MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +  +  +                 +  +V        + + + +       V    T
Sbjct: 183 ELLLKLINDILDLSKIEAGSVELKYEDFDLAVYFNELAASMHRRVVNPQVRLVPVNPYET 242

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL N    A     +G       +   +     ++  G      +K  
Sbjct: 243 CTVRLDKNRLAQILTNFVTNAIKYTSKGTIEMGYEKIDGD-IRLYVRDTGIGI-PEDKKD 300

Query: 166 QIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++       +       +       +    +  +  E   D   +  A+L 
Sbjct: 301 KVFHRFEKLDEFAQGTGLGLSICKAIVEACRGEIGFESEFDKGSLFWAVLP 351


>gi|258543393|ref|YP_003188826.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256634471|dbj|BAI00447.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256637529|dbj|BAI03498.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256640581|dbj|BAI06543.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256643638|dbj|BAI09593.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256646693|dbj|BAI12641.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256649746|dbj|BAI15687.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256652734|dbj|BAI18668.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256655790|dbj|BAI21717.1| two component hybrid sensor histidine kinase and regulator
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1105

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 63/237 (26%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +       +  +L      S I H+I SP+ AI   ++LL          Q     
Sbjct: 641 MDQALQSAREKAEAASLAKTRYISGISHEIRSPLNAIMGYIQLLQHDTRMPTERQQTLSI 700

Query: 57  SMSAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-------- 103
              +           + ++    G ++       +   +E    + +    +        
Sbjct: 701 MRESGDHITSILSGLLDISRIEAGRIELHSDTIPLVTFLESVAQMMRPQAQAKGLKFYWK 760

Query: 104 ---WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++LLNL   A     +G  VT S +       F+++  G     
Sbjct: 761 PQFLPSVVTCDEHRLRQVLLNLLSNAIKYTQQGS-VTFSARWHAQIAEFTVEDTGPGISI 819

Query: 161 PEKFTQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E   +I D        + I    +      LL       L               L
Sbjct: 820 -EDQERIFDPFERAAATANIPGTGLGLTITKLLTEVMGGELTFTSTMGKGSCFKLRL 875


>gi|120601627|ref|YP_966027.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561856|gb|ABM27600.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1005

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK    + +     +   + + H++ +P+  +   L+LL+   ++ +  +L+ ++  S 
Sbjct: 622 LAKEHAESANRAK--SEFLANMSHELRTPLNGMLGMLQLLEAGDLDRDQNELVHIALDSG 679

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105
              L+ +      +      + L       E+ +     +                    
Sbjct: 680 RTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCDELP 739

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
            E         +IL NL   A               +   +     +FS+   G      
Sbjct: 740 CEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTEESVRLLFSVSDTGIGIPHD 799

Query: 162 EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +         G+         +    V  L H     L  E        +   L 
Sbjct: 800 RLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGLNVESALGEGTAVHVCLP 857


>gi|114767714|ref|ZP_01446399.1| sensory box sensor histidine kianse/response regulator [Pelagibaca
           bermudensis HTCC2601]
 gi|114540286|gb|EAU43387.1| sensory box sensor histidine kianse/response regulator [Roseovarius
           sp. HTCC2601]
          Length = 594

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 72/236 (30%), Gaps = 31/236 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62
           + S  + A+  L   + HD  + + AI    +LL    D+   +   +  I  ++  A  
Sbjct: 216 VQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLMLRHDQGDPDYSDLVQISQNANRAAA 275

Query: 63  RLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            +  +    R        +D    L D+  ++   +     + +        +  +R ++
Sbjct: 276 LVSQLLAFSRKQTLRPELLDLRETLSDLTHLLNRLVGERVELVLQHDPVLPKIRGDRRQL 335

Query: 119 LLNLFM---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARF 160
              +      A  ++P GG++ I  +                        ++  G     
Sbjct: 336 EQVMMNLVVNARDAMPDGGEIRIETERIALMEPLQRERALVEPGEYAAVRVRDRGRGI-P 394

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +K  ++ +    +    +   +    V  +  +    +  + +       + +  
Sbjct: 395 TDKLQKVFEPFFTTKRTGEGTGLGLSTVYGIVKQTGGFIFVDSVQGEGSCFTLMFP 450


>gi|331005886|ref|ZP_08329238.1| Phosphate regulon sensor protein PhoR [gamma proteobacterium
           IMCC1989]
 gi|330420330|gb|EGG94644.1| Phosphate regulon sensor protein PhoR [gamma proteobacterium
           IMCC1989]
          Length = 431

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 62/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRL---- 69
             + + H++ +P+  I   LE L    +E     + +Q ++  +      +  + +    
Sbjct: 206 FVANVSHELRTPLTVILGYLETLSDTQEENDPWKKPVQQMQQQATRMTTLINDLTMLSKL 265

Query: 70  -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                         +  L  + D    +     +D  V+           +E      NL
Sbjct: 266 ETEEINKQPIDVNILPLLRMIVDEVNTVHHQRKIDITVECPENWMINGSEKELHSAFSNL 325

Query: 123 FMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKF---TQIVDGNVESTID- 177
            M A    P    V + V ++        +   G             +    +   +I+ 
Sbjct: 326 IMNAVKYSPPDRPVNVKVSKNFVGGIDVKVIDKGYGIEQQHIHRLTERFYRVDASRSIET 385

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +   +  RL      +     SA+  K
Sbjct: 386 GGTGLGLAIVKHILARHDARLNISSRINQGSTFSAIFPK 424


>gi|312903452|ref|ZP_07762632.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|310633328|gb|EFQ16611.1| PAS domain S-box [Enterococcus faecalis TX0635]
 gi|315147398|gb|EFT91414.1| PAS domain S-box [Enterococcus faecalis TX4244]
 gi|315577852|gb|EFU90043.1| PAS domain S-box [Enterococcus faecalis TX0630]
          Length = 591

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLVAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|300867587|ref|ZP_07112236.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334394|emb|CBN57406.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 780

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 73/239 (30%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLI 53
           + +       +     +     + + H++ SP+ A+   L LL+    +     + M+ I
Sbjct: 386 LIREQNARTQAETANRMKDEFLATLSHELRSPLNAMLGWLRLLNTRKFDEKTTAKAMETI 445

Query: 54  RLSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDF----IAVDKRVQ 101
             S+ +    ++ +                 V+ +  +      +           + + 
Sbjct: 446 ERSARAQAQLVEDLLDVSRIIQGKVRLNVRPVELVTVIEAALDTVRPAAEAKEIRLQTIF 505

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF- 160
            S  G     S    +I+ NL   A     +GG+V + ++   +    S++  G   +  
Sbjct: 506 DSTGGLVAGDSDRLQQIVWNLLSNAVKFTLKGGQVQVYLERVNSHVEISVRDTGLGIKPD 565

Query: 161 --PEKFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             P  F +    +     T     I    V  L   +   +  +   +      +  L 
Sbjct: 566 FLPFVFDRFRQADSSIARTYTGLGIGLAIVRHLVELHGGSVRAQSEGEGKGATFTIKLP 624


>gi|295101814|emb|CBK99359.1| Osmosensitive K+ channel histidine kinase [Faecalibacterium
           prausnitzii L2-6]
          Length = 627

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 59/236 (25%), Gaps = 22/236 (9%)

Query: 1   MAKNIC-FNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQL 52
           + K        + +L A L   I HD+ +P+ +I  +        E LD          +
Sbjct: 384 LEKEQATVQAKNEELRANLLRTISHDLRTPLTSISGNASNLLSNGETLDTETRNKICTDI 443

Query: 53  IRLSSMS---------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
              +                             +D +I         +            
Sbjct: 444 FDDAQWLIGLVENLLSITRIEDGRMNLQISPQLMDEMIEEALHHVNRKSCEHTITTQYGD 503

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   +R   ++++NL   A    P G  + IS     ++ +  +  NG       K
Sbjct: 504 EILLVNVDARLIMQVVVNLVDNAIKYTPVGSIIQISAYRKDHQVVVDVADNGPGIPDRAK 563

Query: 164 FTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +  +  S  +       +   +   L       +  V S  L 
Sbjct: 564 AQVFEMFYTGQSRIADSHRSLGLGLPLCRAILTAHGGTLTLRDNIPNGSVFSFALP 619


>gi|294508545|ref|YP_003572604.1| two-component sensor histidine kinase [Salinibacter ruber M8]
 gi|294344874|emb|CBH25652.1| two-component sensor histidine kinase [Salinibacter ruber M8]
          Length = 959

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 63/225 (28%), Gaps = 23/225 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLEL---------LDEVGIEDEVMQLIRLSSMSAIIR 63
            L +   + I H+I +P+ +I    EL         L +  +      + R         
Sbjct: 723 RLKSAFLANISHEIRTPLTSIIGFAELIGSEAGALDLSDSPLPGYATMIERSGKRLLETL 782

Query: 64  LKFMRLAFGYTGSVDSL--------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
              + L+   +G +                ++++         R+Q+       +     
Sbjct: 783 EGVLNLSKLQSGQMKLETAPVDLNEQIRWAVQELRPKAEEKGVRLQLETGCAVAEGDEGG 842

Query: 116 AK-ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVD 169
            + ++ NL   A     +GG + +    +++  +  ++  G            +  +   
Sbjct: 843 IQIVIRNLVSNAIKYTEQGGHIWVRSFQNEDRAVLEVEDTGIGMDPAVAESLFEPFRQAS 902

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +   +          +    +  +   D     +  L 
Sbjct: 903 EGLNREYEGTGVGLAVTNKAVAQMDGSIEVDTEKDEGTRFTIQLP 947


>gi|270489773|ref|ZP_06206847.1| histidine kinase KdpD [Yersinia pestis KIM D27]
 gi|270338277|gb|EFA49054.1| histidine kinase KdpD [Yersinia pestis KIM D27]
          Length = 867

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 21/235 (8%)

Query: 1   MAKNICFN---LSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDE 48
           +A++            L   L + + HD+ +P+  +    E+L               ++
Sbjct: 608 LARSAELAKLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEGSRHAPQANQ 667

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWT 105
           + Q +  ++      L   R+  G          L +I      + +      +++V   
Sbjct: 668 IRQQVLSTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIIGSALYMLETTLSQHQIRVELP 727

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E + ++ +     ++ +NL   AH        + I  +         +  NG      +
Sbjct: 728 DEMVLINCDASLLERVFINLLENAHKYAGHAALLGIRAEVQGEWLNVDVWDNGPGVTIGQ 787

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   GN ES I    +       +   +  R+  E   +       +L 
Sbjct: 788 ENLIFDKFSRGNKESAIPGVGLGLAICRAIIDVHGGRIWVEKRQEGGASFRFVLP 842


>gi|257090018|ref|ZP_05584379.1| two component system sensor histidine kinase [Enterococcus faecalis
           CH188]
 gi|256998830|gb|EEU85350.1| two component system sensor histidine kinase [Enterococcus faecalis
           CH188]
          Length = 576

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 346 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 405

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 406 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLVAKQLKTVVHGLPESQFFTKYEL 465

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 466 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 524

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 525 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 570


>gi|322420773|ref|YP_004199996.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320127160|gb|ADW14720.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 1051

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 68/242 (28%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS---- 57
           +    +   ++ + +L   I HD  + +  I  +  L L     +   ++ ++       
Sbjct: 666 ERQLLHAQKLESLGILAGGIAHDFNNILTGILGNSSLGLMRCPPDSPAVENLQNIEKGAI 725

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                A   L +          V+    L ++  ++E  I+ + +++         +  +
Sbjct: 726 RAADLARQMLAYSGKGMFVVEPVNLNTLLTEMVHLLEVSISKNAQLRFELAQGLPPVQAD 785

Query: 115 RAKILLNLFMVAHASLPRGGK----------------------VTISVQDSKNENIFSLK 152
             ++   +  +   +    G                        +       +     +K
Sbjct: 786 PTQLRQIVMNLVINASEAIGDKGGTITIRSGYRHFDQRYLKSAWSEKGIKEGDFLFLQVK 845

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +G          +I D    +      +    V+ +   +K  +  E +       + +
Sbjct: 846 DSGCGMDEATLS-RIFDPFFTTKFTGRGLGMSAVLGIIRGHKGAIRVESVSGQGTTFTIV 904

Query: 213 LE 214
           L 
Sbjct: 905 LP 906


>gi|229114838|ref|ZP_04244251.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3]
 gi|228668530|gb|EEL23959.1| hypothetical protein bcere0017_11350 [Bacillus cereus Rock1-3]
          Length = 466

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/215 (9%), Positives = 59/215 (27%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEADRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYELKFIEKKLRISTNLNPEIIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGNIIITLEQIDDYCELKIKDTGIGIDAEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  + H +      E        +   L+
Sbjct: 424 GLGLAIVRQIVHIHDGEWKIESEKGKGTTVFIKLK 458


>gi|197122083|ref|YP_002134034.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196171932|gb|ACG72905.1| multi-sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 850

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 69/243 (28%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMD-LVAL--LCSRICHDIISPIGAIHN----SLELLD------------E 42
            + +   + + + + AL  + + + H++ +P+  ++     +LE L             +
Sbjct: 458 RREMQARVQAAERMAALGTMAAGVAHEVNNPLTYVYGNVAFALERLRSVDVARGRQGPVD 517

Query: 43  VGIE--DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             ++   E +               F R   G    VD    +    ++         +V
Sbjct: 518 EALQALREALAGADRVRHIVRDLKAFSRAEDGRLEPVDVAQVIEGCLKMTATLTGDRAQV 577

Query: 101 QVSWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDS-----KNENIFSLKI 153
            V                +++LNL + A  ++P G      ++ S            +  
Sbjct: 578 SVRLAQVPRVLASEARIGQVMLNLIVNAAHAIPEGDPDANRIEVSTALAADGRVEVVVTD 637

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G     PE   +I +    +    +   +       +       +  E           
Sbjct: 638 TGTGI-APEVLPRIFEPFFTTKGVGEGTGLGLSICHGIVKGLDGEIEVETAVGRGSRFRV 696

Query: 212 LLE 214
           LL 
Sbjct: 697 LLP 699


>gi|159899539|ref|YP_001545786.1| histidine kinase [Herpetosiphon aurantiacus ATCC 23779]
 gi|159892578|gb|ABX05658.1| histidine kinase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 631

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 53/241 (21%), Gaps = 33/241 (13%)

Query: 8   NLSSMDLVALL--------CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            L S  L A +         S + H++ +P+ AI    ELL +        Q    +   
Sbjct: 381 TLKSSALAAEVFSRSKSTFMSMMSHELRTPLNAIIGYSELLIDDLSATNQQQSTDDARQI 440

Query: 60  AIIRLKFMRL-----------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                  + +                  +           L    +      +    +++
Sbjct: 441 RSAGRHLLHVIETILQVSNLESGASNVHYDDVDLEMLTNSLELSLRTQFQKRSNQLEIKI 500

Query: 103 SWT-GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD--SKNENIFSLKINGNLAR 159
                     S +  +I+  L   A+     G        D        F +   G    
Sbjct: 501 DPNASWVYSDSSKVRQIIFQLLNNANKFTDHGQVRLTIAPDSLDPEMLAFEVCDTGIGID 560

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    + +          D   +       LA      +            +  + 
Sbjct: 561 HEHLPLLFAEFSQLDASSTRRYDGTGMGLALCRHLARLLGGDIRVWSEPGIGSTFTLAIP 620

Query: 215 K 215
           +
Sbjct: 621 R 621


>gi|22538096|ref|NP_688947.1| sensor histidine kinase [Streptococcus agalactiae 2603V/R]
 gi|77412888|ref|ZP_00789092.1| sensor histidine kinase [Streptococcus agalactiae 515]
 gi|22535002|gb|AAN00820.1|AE014280_12 sensor histidine kinase [Streptococcus agalactiae 2603V/R]
 gi|77161028|gb|EAO72135.1| sensor histidine kinase [Streptococcus agalactiae 515]
          Length = 551

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 72/230 (31%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAII 62
           ++   L    L     + + H++ +P+  I    ELL    + +E + Q        +  
Sbjct: 321 DVTDQLQMEQLQREFTANVSHELKTPLHVISGYSELLANQMVPNEEVPQFAAKIHKESER 380

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117
            +K +      +   +      +   + +    V + +Q     + I ++    +     
Sbjct: 381 LVKLVEDIINLSHLDEQEKLPQETVNLYDLTQKVLEGLQAKADKKHIQINFNGEEAILRG 440

Query: 118 -------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                  ++ NL   A       G+V +++++S +     +   G      +    F + 
Sbjct: 441 NPVLLNSLVYNLCDNAITYNHEKGQVNVTLKNSPDTITLEVSDTGLGIAEKDKKRIFERF 500

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +  +    +    V      +   +  +        ++ LL K
Sbjct: 501 YRVDKSRSKIVGGTGLGLSIVKSALDFHNGSIKVDSHLGQGTTMTVLLHK 550


>gi|332761182|gb|EGJ91468.1| sensor protein kdpD domain protein [Shigella flexneri 2747-71]
          Length = 420

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 175 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 233

Query: 54  RLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 234 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMPEPGLSSPINLSLPEP 293

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 294 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 353

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 354 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 406


>gi|330876582|gb|EGH10731.1| sensory box histidine kinase/response regulator [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 660

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 69/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           + +       S  + A+  L   I HD  + +  I  SLELL     +    ++ R    
Sbjct: 271 LTQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRLSQGRFTEIDRYVAA 330

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     ++V  +   
Sbjct: 331 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITLEVVTSVGL 390

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 391 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQTRDLSPGQYLSLCV 450

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 451 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 509

Query: 210 SALLEK 215
              L +
Sbjct: 510 CLYLPR 515


>gi|262275319|ref|ZP_06053129.1| hypothetical Signal transduction histidine kinase regulating
           C4-dicarboxylate transport system [Grimontia hollisae
           CIP 101886]
 gi|262220564|gb|EEY71879.1| hypothetical Signal transduction histidine kinase regulating
           C4-dicarboxylate transport system [Grimontia hollisae
           CIP 101886]
          Length = 602

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 58/234 (24%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRL 55
           + +     + +  L  L  L + I H+I  P+ A+    E    L E    D V   +  
Sbjct: 362 LRQTESELIQAAKLAMLGELSASINHEINQPLAAMRTYTENSIKLMEKERYDAVSANLTT 421

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113
            +    +    +     +    +                           G ++      
Sbjct: 422 LNDLISMIADIVARFKIFARKQNLEGKTRASVDDAITASLKLSAASFIKKGIQVACHMPE 481

Query: 114 ----------ERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFP 161
                     +  +++LNL   A  ++       I ++           +  NG      
Sbjct: 482 KGLVVNIDTVQLEQVILNLLNNAAQAVVNIPSPEIGIKVETFLDRVSIHVWDNGPGI-DN 540

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   QI      +  +   +       +       L            +  L++
Sbjct: 541 DTKKQIFSPFYTTKKEGLGLGLTICRRIVEGFDGSLQISDHSTGGAEFTVTLKR 594


>gi|260587289|ref|ZP_05853202.1| sensor histidine kinase KdpD [Blautia hansenii DSM 20583]
 gi|260542484|gb|EEX23053.1| sensor histidine kinase KdpD [Blautia hansenii DSM 20583]
          Length = 515

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 72/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
                    +  L A L   I HD+ +P+ +I  +  +L    +   +++  QL      
Sbjct: 274 RAAAALMAKNEQLRANLLRSISHDLRTPLTSISGNAGILISNADSMGKEKQQQLYEDIYE 333

Query: 59  SAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +      T   D           L  +        +      +++V  +   
Sbjct: 334 DSLWLINLVENLLSVTRIEDGTMKLQLNAELLEEIVQEAVHHVEKRCKKHKLRVQLSENL 393

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +  +     ++L+NL   A    P+G ++ I  +      + S+  NG+     E   
Sbjct: 394 ILVKADARLIVQVLVNLVDNAVKYTPKGSEILIETRQEGTNAVVSVSDNGSGI-SDEAKE 452

Query: 166 QIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +        +        +       + H +   +  E    H    +  L 
Sbjct: 453 YIFEMFYTGNSHAADSRRSLWLGLALCKSILHAHGGDIFVEDCQPHGARFTFTLP 507


>gi|209963475|ref|YP_002296390.1| Nitrogen regulation protein NtrB [Rhodospirillum centenum SW]
 gi|209956941|gb|ACI97577.1| Nitrogen regulation protein NtrB [Rhodospirillum centenum SW]
          Length = 375

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 74/221 (33%), Gaps = 26/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYTG 75
           + + + H++ +P+  I  + +LL+E  +E++ +  +LI   +   +  +  M +      
Sbjct: 145 MAAMLAHEVKNPLSGIRGAAQLLEESVVEEDRLLTRLICDETDRIVALVDRMEVFADRRP 204

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRERAKILLNLFMVAHA 128
              + I +  + + +           + +                +  ++LLNL   A  
Sbjct: 205 VQKAAINIHSVLEHVRRIAQNGFARHIRFVERYDPSLPPVLGNRDQLIQVLLNLVKNAAE 264

Query: 129 SLPRGGKVTISVQDSKNENI---------------FSLKINGNLARFPEKFTQIVDGNVE 173
           + P  G   +     ++                   S++ NG+     +    + D  V 
Sbjct: 265 ACPEQGGEIVLSTAYQHGVRLAVAGSDSRVHLPLLVSVQDNGDGI-PEDIQANLFDPFVT 323

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + ++   +    V  +  ++   +  E +     V    L 
Sbjct: 324 TKLNGTGLGLALVAKIVGDHGGVIEFESVP-RRTVFKVSLP 363


>gi|190575485|ref|YP_001973330.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
 gi|190013407|emb|CAQ47041.1| putative two-component histidine kinase/response regulator fusion
            protein [Stenotrophomonas maltophilia K279a]
          Length = 1168

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 60/244 (24%), Gaps = 32/244 (13%)

Query: 2    AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
                   L   +L            + + H+I +P+  +    ELL    ++ +     +
Sbjct: 783  RHAYQLALHKQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDPQQRGYTQ 842

Query: 55   LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +    L                    +        L D+  ++    A        
Sbjct: 843  SIRHAGEHLLHLINDALDLARIESGRLELQSKPFALSCLLQDLAALMGPLAAQKGLRFTL 902

Query: 104  WTG-----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNL 157
                    +    +    +ILLNL   A     RG     +  D +     F ++  G  
Sbjct: 903  DNQLPPGLQATGDAMRVRQILLNLLSNAVKFTSRGTITLHARSDGELRALHFEVRDTGPG 962

Query: 158  ARFPEKFTQIVDGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E+  ++     ++             +       LA   + R+  E          
Sbjct: 963  I-SQEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFG 1021

Query: 211  ALLE 214
              L 
Sbjct: 1022 VTLP 1025


>gi|159901042|ref|YP_001547289.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159894081|gb|ABX07161.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 492

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 57/235 (24%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++I   + S  L +   +   H++ SP+ +I    ++L     E    + I         
Sbjct: 239 QDISARVESERLRSDFMALAAHELRSPLTSIRGFADMLLWSNPEHFSAEEISYIEGIGRN 298

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------------ 110
             +   L               +      D   V   V   +                  
Sbjct: 299 IQRLTELMNDVVELARLETQRNEHTPQPVDLRQVLSAVLDEFRPRAERKKLQLDCLLPNE 358

Query: 111 ------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I  +L   A    P  G++ I VQ   ++ +  ++  G      E+ 
Sbjct: 359 LPLLSLDPLHIRQISHHLISNAIKYTPEQGQIQIEVQQRIDDILVVVRDTGIGISLREQP 418

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                +       L   N   +  E I++          
Sbjct: 419 RIFGRFFRNDNPLSRAAGGTGLGLSIAKALVEMNHGSIYFESIEEEGTTFYVAFP 473


>gi|126642022|ref|YP_001085006.1| two-component regulatory system sensory kinase [Acinetobacter
           baumannii ATCC 17978]
          Length = 275

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 63/238 (26%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +    +   L   + H+I +P+  I  + +LL     ++   +   +       
Sbjct: 32  SKEENLIQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLNDESYAEFTDIIINEVDR 91

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                    G         V+    L  +  +I +      ++   +     D+  +R +
Sbjct: 92  LTNLADTMLGSRQLPSYENVNVHEPLERVRSLIANQTKKKIKITRDYDLSLPDVKADRDQ 151

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNE---------------------NIFSLKINGN 156
           ++  +  ++  ++    +      D + E                         ++ NG 
Sbjct: 152 LIQVMLNISVNAIQAITENKSFFTDQEPELILRTRIQRLVTINGVLNRSAVRVDIEDNGP 211

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V        +       + H++   +  + +     + S  L 
Sbjct: 212 GIPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGK-TMFSLYLP 267


>gi|120402832|ref|YP_952661.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
 gi|119955650|gb|ABM12655.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 395

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 60/217 (27%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRLSSMSAIIRLKFM 67
           L S + H+I +P+  +   +E L++            + D+  +L+R S   A +     
Sbjct: 160 LFSDLAHEIRTPVAVLEAYIEALEDGVRTLTPQTAAMLRDQTRRLVRFSDDVAALAKAEE 219

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSRERAKILLNLF 123
             A      VD            ++                        +  A+++ NL 
Sbjct: 220 SSASMACSFVDVPRLAHHCAAAAQERFDSKNVTLAVRVAEGLPPLWADEQRLAQVVGNLV 279

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVEST--IDS 178
             A    P GG+V +S +    E    +  NG        P  F +    +         
Sbjct: 280 DNALRHTPAGGRVEVSWEREGAELALRVADNGAGIAAEHLPRLFERFYRADTARDREHGG 339

Query: 179 HDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
             I       L   +   +             +  L 
Sbjct: 340 AGIGLAITRALVEAHGGTISVASAGPGTGATFTVTLP 376


>gi|78063227|ref|YP_373135.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
 gi|77971112|gb|ABB12491.1| periplasmic sensor signal transduction histidine kinase
           [Burkholderia sp. 383]
          Length = 568

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMS 59
           A++    +    +   L + + HD+ +P+ AI    E L+      + +   L       
Sbjct: 325 AQHTLVRIEGERMRNALLAAVSHDLKTPLTAIRGLAETLERPERLADGQPAALAHGIRNQ 384

Query: 60  AIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEKI 109
           A          + LA   +  V        +++++   +A        + V      +  
Sbjct: 385 AEALHGLVVNLLDLARMQSEGVRLNREWHMLDEIVGSALAHSAGVLAGRDVSADLPADLP 444

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
            +  +     ++L+NL   A         V +  +         ++ +G           
Sbjct: 445 LIDVDALLIERVLMNLLDNASKYAGTDAAVAVRARVFGETLYVFVEDDGPGFIARNTEPL 504

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F        ES+I    +       + + +   +    +D H       L 
Sbjct: 505 FEPFERERKESSISGVGLGLALCRSIVNAHGGSIRAVPLDPHGARFEIRLP 555


>gi|51244211|ref|YP_064095.1| two-component system sensory/regulatory protein [Desulfotalea
           psychrophila LSv54]
 gi|50875248|emb|CAG35088.1| probable two-component system sensory/regulatory protein (hybrid
           family) [Desulfotalea psychrophila LSv54]
          Length = 910

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 54/237 (22%), Gaps = 28/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+     +     +   + + H+I +P+  +    +LL++  +  +    +R    S  
Sbjct: 525 AKDEAERANQAK--STFVANMSHEIRTPLNGVLGLAQLLEKTSLSVDQRSYVRRILDSGQ 582

Query: 62  IRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVS----WTG 106
             L  +     +                    L  +   +        +  +        
Sbjct: 583 QLLTTVNDILDFAKMEAGRLEIEESGFSLHALLQPVIDSVFVEEESSPKFCLDVAPGIPE 642

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPE 162
             I       ++L+NL   A      G      V            FS+   G      +
Sbjct: 643 NLIGDRFRIGQVLINLLGNALKFTKEGHVSLHVVSMGLGEKGVILKFSIIDTGVGIAL-D 701

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              Q+                   +       L       +  E            L
Sbjct: 702 VQKQLFVPFTQADSSVTRNYGGTGLGLTICKKLVVAMGGDIGLESSPGAGSTFWFTL 758


>gi|330964355|gb|EGH64615.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 696

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           + +       S  + A+  L   I HD  + +  I  SLELL     +  + ++ R    
Sbjct: 308 LTQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRLSQGRLTEIDRYVAA 367

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     V+V  +   
Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKPVDINRLVIGMEELIRRTVGPHITVEVVTSVGL 427

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQTRDLSPGQYLSLCV 487

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 546

Query: 210 SALLEK 215
              L +
Sbjct: 547 CLYLPR 552


>gi|330940801|gb|EGH43783.1| PAS protein [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 671

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +++       S  + A+  L   I HD  + +  I  SLELL     +    +L R    
Sbjct: 282 LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGA 341

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     V+V  +   
Sbjct: 342 AQDASKRAASLTHRLLAFSRRQTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGL 401

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 402 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCV 461

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 462 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 520

Query: 210 SALLEK 215
              L +
Sbjct: 521 CLYLPR 526


>gi|327535268|gb|AEA94102.1| sensor histidine kinase [Enterococcus faecalis OG1RF]
          Length = 591

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|319654335|ref|ZP_08008423.1| hypothetical protein HMPREF1013_05043 [Bacillus sp. 2_A_57_CT2]
 gi|317394035|gb|EFV74785.1| hypothetical protein HMPREF1013_05043 [Bacillus sp. 2_A_57_CT2]
          Length = 487

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 60/218 (27%), Gaps = 13/218 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           NL  + ++  L + + H+I +P+ ++    +LL     +++    + +           +
Sbjct: 268 NLDRLSIIGQLAAGVAHEIRNPLTSLKGFSKLLQSSVNQEKQDDYLSIIMEELDRIDIIV 327

Query: 68  RLAFGYTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                                     +  +                      +    +  
Sbjct: 328 NEFMSLAKPQAIEFEKGSLMSILESTINVLHPQALLHNVQIHLNHFENDIMLLCSPPQLK 387

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           ++ +N    A  ++P GG V IS +  +      + +  G      E    +      + 
Sbjct: 388 QVFVNFLKNAIEAMPNGGNVYISAERIESRRVRIAFEDEGAGI-DGEMLKYLGTPFYTTK 446

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                +       +  E++  +  E +      +   L
Sbjct: 447 DKGIGLGLTVSNKIIQEHQGLMAIESVIGKGTTVMVEL 484


>gi|307277930|ref|ZP_07559014.1| PAS domain S-box [Enterococcus faecalis TX0860]
 gi|306505327|gb|EFM74513.1| PAS domain S-box [Enterococcus faecalis TX0860]
          Length = 591

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGGATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|258627567|ref|ZP_05722344.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
 gi|258580149|gb|EEW05121.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM603]
          Length = 1325

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G  V       + + +   +F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQINEQQVMLLFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|257082419|ref|ZP_05576780.1| hypothetical protein EFJG_00863 [Enterococcus faecalis E1Sol]
 gi|257416224|ref|ZP_05593218.1| hypothetical protein EFFG_01166 [Enterococcus faecalis AR01/DG]
 gi|256990449|gb|EEU77751.1| hypothetical protein EFJG_00863 [Enterococcus faecalis E1Sol]
 gi|257158052|gb|EEU88012.1| hypothetical protein EFFG_01166 [Enterococcus faecalis ARO1/DG]
          Length = 576

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 346 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 405

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 406 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 465

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 466 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 524

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 525 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 570


>gi|255975712|ref|ZP_05426298.1| sensor histidine kinase [Enterococcus faecalis T2]
 gi|255968584|gb|EET99206.1| sensor histidine kinase [Enterococcus faecalis T2]
          Length = 506

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 276 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPKVLDQFLHIMQKDAQRLQQLI 335

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 336 QEILELSRGGATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 395

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 396 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 454

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 455 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 500


>gi|210623053|ref|ZP_03293540.1| hypothetical protein CLOHIR_01490 [Clostridium hiranonis DSM 13275]
 gi|210153856|gb|EEA84862.1| hypothetical protein CLOHIR_01490 [Clostridium hiranonis DSM 13275]
          Length = 918

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 62/235 (26%), Gaps = 22/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +     + S  L + L   I HD+ +P+  I  ++                ELL+ +  
Sbjct: 678 REKDKLEMESERLRSNLLRAISHDLRTPLAGISGAVSTIIKNKNEISEEITDELLNGIYE 737

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + + +  +  + +S     +           V+ ++             A  +       
Sbjct: 738 DSQWLIRLVENLLSMTKIDEGKLKVGKEPELVEEVLSESLSHIKRRLNDADVEIDIPDEL 797

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---E 162
                  +   ++ +NL   +        K+ I V    +   F    NG          
Sbjct: 798 IFVPMDVKLIEQVFVNLVDNSLKYATSSCKINIRVYRDDDNAWFEFSDNGPGISDDLASH 857

Query: 163 KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDD-HNVVLSALLE 214
            F +   G  +S        +       + + +   +      +         L 
Sbjct: 858 IFDRFYTGERKSKDSRKGVGLGLSICKSIVNAHGGEIKVRNSQELGGAEFIFNLP 912


>gi|189465363|ref|ZP_03014148.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
 gi|189437637|gb|EDV06622.1| hypothetical protein BACINT_01712 [Bacteroides intestinalis DSM
           17393]
          Length = 580

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 51/230 (22%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +AK      + +    L  + + H+I +P+ AI     +L E        E + +I  ++
Sbjct: 341 LAKEEAEESNRIKSAFL--ANMSHEIRTPLNAIVGFSSILAEDVSEEERTEYLSIISKNN 398

Query: 58  MSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +  +  +             +      +               +       V     
Sbjct: 399 DILLQLINDILDLSKIEAGTLEYVYANIDVNKMLSEIEQAARMRQTNANVAICAVTPLEG 458

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  R   ++L N    A      G       +       F +   G      +   
Sbjct: 459 LLLYTDQRRVTQVLNNFISNAMKFTNTGSITFGYEEPKDGYIRFFVTDTGTGIPPEKVAD 518

Query: 166 QIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      +       +  E K  +               L 
Sbjct: 519 IFNRFVKLDSFKQGTGLGLAISQNIVKELKGEIGVASELGKGSTFWFTLP 568


>gi|189203185|ref|XP_001937928.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187985027|gb|EDU50515.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 918

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 57/242 (23%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  N      +  + +   + + H+I +PI  +    ELL ++ + DE          SA
Sbjct: 444 LLANEAAAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDMNLNDEQKDCAENIHRSA 503

Query: 61  I------------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                              D    +    Q          + +V
Sbjct: 504 NSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEV 563

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLA 158
                 +       +IL N+   +      G      +   +++      FS+   G   
Sbjct: 564 QADLRVMGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGI 623

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E   ++                   +       L    K ++  +         +  
Sbjct: 624 -EEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFW 682

Query: 213 LE 214
           + 
Sbjct: 683 IP 684


>gi|182438911|ref|YP_001826630.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178467427|dbj|BAG21947.1| putative two-component system sensor kinase [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 480

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 72/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRI-----CHDIISPIGAIHNSLELL-DEVGIEDEVMQLIR 54
           +A+     L  ++  A    R+      H++ +PI  +   LEL+ D+    +E ++L+ 
Sbjct: 247 LAETFNAMLDRLE-RAFAAQRVFVDDAGHELRTPITIVRGHLELMGDDPADREETVRLVT 305

Query: 55  LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                    ++ +       R  F     V       D+   +      + ++      E
Sbjct: 306 DELDRMSRIVEDLLLLAGAERPDFVTPEPVQLAELTADVYVKVRTLGDREWQLDGVADLE 365

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
                +   + ++ L   A      G ++ I  +  ++     +  +G      +    F
Sbjct: 366 VRLDPQRMTQAMVQLAQNAVQHTVPGQRIRIGSRLEEDRVELYVADHGPGIPPEDAGVIF 425

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   G       +    +    V  +A  +  R+     +         LE
Sbjct: 426 ERFRRGTSRRGTRTSGAGLGLAIVKAIAEGHHGRVELRRTEGGGATFVLTLE 477


>gi|162449617|ref|YP_001611984.1| hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
 gi|161160199|emb|CAN91504.1| Hybrid histidine kinase [Sorangium cellulosum 'So ce 56']
          Length = 949

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 69/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       L +  + +   + + H+I +P+  I   + L+    ++ ++ + +     SA
Sbjct: 301 LRVKTEQALEASRMKSEFLANMSHEIRTPMNGILGVIRLMQNQSLDGKMRRYVETVDASA 360

Query: 61  IIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
              +  +     ++              D  + + ++ +++             RV+   
Sbjct: 361 NTLMSIINDVLDFSKLEAGKYVAQHVSFDLRLVIQEVAELMASQAHEKGLELVYRVERRV 420

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
               +       ++L NL   A     RG  +  +    +++       ++   G     
Sbjct: 421 PTGVVGDPDRFRQVLTNLVGNAIKFTDRGEVLIDASTSQQDKATALIKLAVVDTGPGIAP 480

Query: 161 PEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            ++         VDG++        +       L       +  +            +
Sbjct: 481 DDQKKLFAAFSQVDGSLVRKHGGTGLGLAISKRLVEVMGGEVGLDSTPGQGSRFWFTI 538


>gi|21229203|ref|NP_635125.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907772|gb|AAM32797.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 715

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 65/244 (26%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            +     L     +A +         + + H++ +P+ +I    +LL E     + ++  
Sbjct: 466 ERKEAERLLHEKQIAEIANRTKSEFLANMSHELRTPLNSIIGFSDLLYEKVYGELNEKQA 525

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDK 98
           + +   S S    L  +      +      + L   E             +       + 
Sbjct: 526 RAVGNISRSGKHLLNLINDILDLSKVEAGKMELDYKEFELAGKLNAIKSLLSPIADRKNI 585

Query: 99  RVQVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            + +        +  +     +I+ NL   A       G V +  +   +    ++K  G
Sbjct: 586 EIDIEVDKGLTHIRADEARFVQIMYNLMDNAIKFSHENGLVKVRAERKGDLVEITVKDKG 645

Query: 156 NLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +  ++                T     +    V  + + +   +            +
Sbjct: 646 IGIKEEDQCKLFKPFSQVDSFSSKTFQGTGLGLSLVKQIVNLHGGEVWFNSKIGEGSTFA 705

Query: 211 ALLE 214
             + 
Sbjct: 706 FTVP 709


>gi|116748089|ref|YP_844776.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697153|gb|ABK16341.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 492

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 60/233 (25%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSS 57
           + ++    L S  L     L + + H I +P+ ++   L  ++    +     +   + S
Sbjct: 251 LQQSREHLLQSEKLALVGKLAAGVAHSIRNPLTSVKMRLFTMERTLDLSSNQKEDFDVIS 310

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                    ++    ++      +            I+ +     +    +++       
Sbjct: 311 DEIRHIDNILQNFLEFSRPPKLKMQRISPSDVVDMAIQLLRHRIESYGVTLELYRQRRLP 370

Query: 110 DLSRERAKILLNLFMVAHASLPRG--------GKVTISVQDSKNENIFSLKINGNLARFP 161
           ++  +  ++   L  +   +             +     +      +  +  NG      
Sbjct: 371 EIEGDPEQLKEVLVNLIVNACEAMGDGGKILIREEEGVTEPQGRVAVVRVSDNGPGI-PE 429

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               ++      +  +   +       +  E+K  L               L 
Sbjct: 430 AIREKVFQPFFSTKEEGTGLGLSIAARIIEEHKGCLNLRARQSKGATFIITLP 482


>gi|329298208|ref|ZP_08255544.1| aerobic respiration control sensor protein ArcB [Plautia stali
           symbiont]
          Length = 781

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 52/220 (23%), Gaps = 24/220 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E ++ ++   +SAI                  
Sbjct: 292 STISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERR 351

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                        +      ++    +         +IL NL 
Sbjct: 352 KVQLDNQPLDFTGFLADLENLSGLLAQPKGLKFVMAPELPLPHKISADGTRLRQILWNLI 411

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A     +G  V            F ++ +G      E+                    
Sbjct: 412 GNAVKFTRQGEIVVRVAYHQDETLHFEVQDSGMGIPQEEQDKIFAMYYQVKDQHGGKPAT 471

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL--EK 215
              I       LA      +            +  +   +
Sbjct: 472 GTGIGLAVSRRLAQAMGGDITVSSAPGQGSCFTVEIHAPR 511


>gi|320354978|ref|YP_004196317.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123480|gb|ADW19026.1| integral membrane sensor hybrid histidine kinase [Desulfobulbus
           propionicus DSM 2032]
          Length = 942

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 54/225 (24%), Gaps = 29/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +L  + + H+I +P+ AI     L  +   E    +L++    SA   L  +     ++ 
Sbjct: 269 SLFLANMSHEIRTPMNAIIGMTRLALDNRPEPGQRKLLQTVKDSADSLLGILNDILDFSK 328

Query: 76  SVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSWTGEKIDLSRERAKIL 119
                + L     V+   +                     +        I       +I 
Sbjct: 329 IEAGQLLLSKKPFVLGQLMETMISALKVPAAEKGLTLEYSISPDLPAVIIGDDLRLRQIF 388

Query: 120 LNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            NL   A               V+             ++ +G      E+  +I +   +
Sbjct: 389 FNLVGNAIKFTETGGVTVSIEPVSDGPPQQGCLLHCRVRDSGIGI-PKEQQERIFNTFEQ 447

Query: 174 ------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                        +       L      R+  E            
Sbjct: 448 ADGSSVRKYGGTGLGLTISRQLTEMMGGRMWVESEPGVGSTFHFT 492


>gi|312891787|ref|ZP_07751294.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
 gi|311295729|gb|EFQ72891.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
          Length = 370

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 61/214 (28%), Gaps = 20/214 (9%)

Query: 21  RICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
            + H++ +P+ A+   +++L        +      + ++ +       +    + L+   
Sbjct: 155 MVSHELKTPLTALKAYVQMLNNWAKKQKDNFTIGALSKVDKQVKKMLNMINSLLNLSGAE 214

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--------SRERAKILLNLFMV 125
            G +        ++ +I + +     +  +                  +  ++L+NL   
Sbjct: 215 AGKIHLKKEEFRLDVLINEVVEETLFITSTHHIVTSPCDSVTINADREKIEQVLVNLLSN 274

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHD 180
           A     +  ++ I      +    S++  G      +     +            I    
Sbjct: 275 AAKYSDKTAEIEIGCTVRGDNVEVSVRDQGLGIAPADIQKLFLPHYRVESKETEKIAGFG 334

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I  Y    + + +  ++  E            L 
Sbjct: 335 IGLYLCAEIINRHHGKIWAESEPGKGSTFKFTLP 368


>gi|316931525|ref|YP_004106507.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315599239|gb|ADU41774.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 1071

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 73/241 (30%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------QLIR 54
           +        M+ +  L   I HD  + +  I  +++++ +   +   +        +   
Sbjct: 664 EEQLRQSQKMESIGQLTGGIAHDFNNMLTVITGTIDIISDGVADQPHLAAIAKLISEAAD 723

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             S    + L F R         D    L  ++ ++   +     V+     +   +  +
Sbjct: 724 RGSELTRLLLAFARKQPLRPDETDVNALLAGLQSLLRPTLGEPIEVETMLAPDTWPIYVD 783

Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQD---------------SKNENIFSLKINGN 156
           R ++   L      A  ++P+GGK+TI   +                 +  + ++   G+
Sbjct: 784 RGQLESALVNLAVNARDAMPKGGKLTIESCNVVVDSDLGKRLGDLAPDDYVMIAIADTGS 843

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +++ D    +        +    V     ++   +  +  +         L 
Sbjct: 844 GIPES-IRSKVFDPFFTTKEVGKGTGLGLSMVYGFIKQSGGHITLDSEEGQGTTFRLYLP 902

Query: 215 K 215
           +
Sbjct: 903 R 903


>gi|261253198|ref|ZP_05945771.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891]
 gi|260936589|gb|EEX92578.1| hypothetical protein VIA_003223 [Vibrio orientalis CIP 102891]
          Length = 565

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 61/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       S        + I H++ +P+  +  S ELLD   +++E   L+   + S  
Sbjct: 192 QEARSRAEESERSTKEFVAMINHELRTPLNGLLGSAELLDGTELDEEQRTLLTNLTHSGD 251

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
           +    +     ++     ++ L      + +   +   +                     
Sbjct: 252 LLRHIINDILDFSKMNAGMMELIPSTFQMSELRNMIHGIFEPRAREKGIEFTITESGELP 311

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       +IL+NL   A      G     +   + +    S+   G      E   
Sbjct: 312 TSFIGDFERIGQILVNLVGNAVKFTSEGSVTVTARWSAGS-LTMSVSDTGVGI-AEEAKK 369

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++    V+         +   +       L       +  E            L 
Sbjct: 370 ELYSPFVQADRTAKRHFEGTGLGLAICKNLVELMSGTIALESEVGKGSCFEVTLP 424


>gi|260463647|ref|ZP_05811845.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
 gi|259030501|gb|EEW31779.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
           opportunistum WSM2075]
          Length = 550

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 23/233 (9%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLS 56
           +     L      AL  + S + H+I  P+ AI N L     LL++   ++  M    + 
Sbjct: 306 EQQQELLHMARFTALGEMASTLAHEINQPLTAITNYLKGSRRLLEKSKDDNAEMLREAVE 365

Query: 57  SMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             +         +               V+ L  + +    +    A +  V+VS+  + 
Sbjct: 366 RAAEQALRAGDVIRHLRDFVARGESERQVERLATIIEEASSLALVGAREADVRVSYELDP 425

Query: 109 I-----DLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARF 160
                     +  ++LLNL   A  ++    +     ++   +      S+K  G     
Sbjct: 426 AAELVLTDRIQIQQVLLNLMRNAVEAMQGAPRRELRVVTRTRADGMAEVSVKDTGPGL-A 484

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           PE   Q+    + +      +       +   +   +  E +          L
Sbjct: 485 PEISAQLFQPFITTKKQGMGVGLSICRTIVESHGGHIWAEAMPGGGTAFRFTL 537


>gi|254785340|ref|YP_003072769.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
 gi|237685431|gb|ACR12695.1| signal transduction histidine-protein kinase BarA [Teredinibacter
           turnerae T7901]
          Length = 932

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 56/231 (24%), Gaps = 27/231 (11%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
            + +  + +   +   H+I +P+  I    ELL +  +       +     SA   L  +
Sbjct: 263 AIQASKVKSEFLANTSHEIRTPLNGILGFSELLKKTELNPLQEDYLETIYESAKGLLTII 322

Query: 68  RLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDL 111
                ++             V     L +  ++        K      V        +  
Sbjct: 323 NDILDFSRLETGKLTLEYKPVRLRQVLEEALRLQAPAAHEKKLRLLTIVDHDIPEHLLGD 382

Query: 112 SRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                ++L NL   A      G            D++    F +  +G      ++  ++
Sbjct: 383 PLRLKQVLTNLLSNAIKFTNVGHILISVSKEDRADNQITLQFRITDSGIGLN-QDQQEKL 441

Query: 168 VDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            D           T     +       L       +  E            
Sbjct: 442 FDAFTQLDASDSRTHGGTGLGLAIAKGLVDRMHGEIGVESEPGKGATFWFT 492


>gi|218886348|ref|YP_002435669.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757302|gb|ACL08201.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1101

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/247 (10%), Positives = 58/247 (23%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELL---DEVGIEDEVM 50
            K     L +  L A   S         + H+I +P+  I   L+L+        + +  
Sbjct: 674 RKTAEIELLNAKLRAEAASKAKSEFLANMSHEIRTPLNGILGMLQLMHTTRLGAEQADYA 733

Query: 51  QLIRLSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +   S           + L+   +G +D       +   ++  + +   + +       
Sbjct: 734 DIAIQSGRRLARLLSDMLDLSRIESGKLDIRHVPFQLAAAVQQVVELFLPISLQAGIRLD 793

Query: 110 DLSR------------ERAKILLNLFMVAHASLPRG-----GKVTISVQDSKNENIFSLK 152
                              ++L NL   +      G                   +F++ 
Sbjct: 794 VRMDPTTPETLLGDIVRVQQVLTNLLGNSFKFTRIGGITLAVHRLPPPHAPACRVLFTIS 853

Query: 153 INGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G      +              +  +     +       L H     +  E  +    
Sbjct: 854 DTGCGIPEDKLGELFEPFTQASNGMRRSHQGAGLGLSICKRLVHLMGGEITIESEEGAGT 913

Query: 208 VLSALLE 214
                L 
Sbjct: 914 TACVSLP 920


>gi|218439790|ref|YP_002378119.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218172518|gb|ACK71251.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 364

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 60/216 (27%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMR------- 68
           L S + H++ +P+  +   LE L +       E+   +   +         ++       
Sbjct: 148 LISDLTHELRTPLTVVRGYLEQLADDSIEPSTELYLKLVKETRRLERLTHDLQELSKAEA 207

Query: 69  -LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LSRERAKILLNLF 123
                 T  V     L  + +   D +  +  +        +           +IL+NL 
Sbjct: 208 GYLIIKTQPVHLYPLLQSLVERFSDQLLDEGPILKLDCPPDLPAVLADIDRTEQILVNLL 267

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDS 178
             A     +G  +  +  + ++    ++   G      +    F +    +   +     
Sbjct: 268 GNALRYTEQGSIILKAWTEKQS-VWIAVIDTGIGIAQEDLPFVFERFWRADRSRSRYSGG 326

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I    V  L      R+  E       +    L 
Sbjct: 327 SGIGLAIVRRLIELQNGRIEVESELGTGSIFRFCLP 362


>gi|218779594|ref|YP_002430912.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760978|gb|ACL03444.1| Hpt sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
           AK-01]
          Length = 1102

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 67/243 (27%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           A  +       ++   +  + + H+I +P+  +    ELL E  +  E  + +   + SA
Sbjct: 415 ANQLAVEAELANMAKGVFLANMSHEIRTPMNGVIGMGELLMETRLNSEQTEYVERINSSA 474

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSW 104
                     +  +      +D  +   +                 E  +     +    
Sbjct: 475 QALLRVINDILDYSKIDADKLDLEVIEFNLRNTVEGVADVISVPAEEKGVEAACLIHHDV 534

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
                       +IL+NL   A     +G  V     DS++E      F ++ +G     
Sbjct: 535 PLWLKGDPGRLRQILMNLSGNAVKFTEKGEVVIRVSLDSEDEETAVIRFEVRDSGIGI-P 593

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSAL 212
           P+    +                   +       L+      +     +        +A+
Sbjct: 594 PDVQKTLFTPFTQADSSTTRKHGGTGLGLAISKKLSELMGGEIGLTSEEGKGSTFWFTAV 653

Query: 213 LEK 215
           L K
Sbjct: 654 LPK 656


>gi|197120985|ref|YP_002132936.1| histidine kinase [Anaeromyxobacter sp. K]
 gi|196170834|gb|ACG71807.1| histidine kinase [Anaeromyxobacter sp. K]
          Length = 237

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 67/205 (32%), Gaps = 10/205 (4%)

Query: 20  SRICHDIISPIGAIHNSLEL-LD--EVGIEDEVMQLIRLSSMSAII-RLKFMRLAFGYTG 75
           + + H++ +P+ A+   ++L L         E ++ +  +          ++  A G   
Sbjct: 29  ATLAHELKNPLTAVKALVQLGLANPREAASHERLEQVARAVERMERILRDYLASARGMAE 88

Query: 76  SVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
              + + +G +       +         R+            R   + L+NL      + 
Sbjct: 89  LAPAQVEVGPLVTGVLQGLSARASEARVRLVARGDATVEADPRRLEEALVNLVANGIEAT 148

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
           P GG+V + V  S       ++  G+     +   ++      +    + +   +V  + 
Sbjct: 149 PPGGEVAVEVLSSAEGAELVVRDTGSGI-TADALERLGTPFFSTRSGGNGLGVAHVRSVI 207

Query: 191 HENKIRLLPEIIDDHNVVLSALLEK 215
             +   L  E       V+ A L +
Sbjct: 208 AMHGGSLRYESEPGKGTVVRATLPR 232


>gi|194366814|ref|YP_002029424.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
 gi|194349618|gb|ACF52741.1| integral membrane sensor hybrid histidine kinase [Stenotrophomonas
            maltophilia R551-3]
          Length = 1181

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 55/243 (22%), Gaps = 30/243 (12%)

Query: 2    AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
             +     +    L        +   + + H++ +P+  +    ELL    ++        
Sbjct: 794  RQQWQLTVHKQQLAEQASQAKSRFLATLGHEVRTPMTGVLGMSELLLATPLDPVQRSYAG 853

Query: 55   LSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +                             D    L  ++ +++      +     
Sbjct: 854  SIQQAGSHLLRLVNDALDLARIEAGRLELDLRPFDLAGLLDQVQALMQPMARQRQLAFQR 913

Query: 104  WTGEKID-----LSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNL 157
                              +ILLNL   A     R    + + + D+     F +  +G  
Sbjct: 914  GDDPPGPISVSGDEMRVRQILLNLLGNAIKFTERGHVGLAVRLDDNGAGLCFEVHDSGPG 973

Query: 158  ARF------PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                       +F Q       S      +       LA     R+  +           
Sbjct: 974  INAEQQERLFHRFEQAEGPRTASRYGGSGLGLAICQELAVAMGGRIEVDSQPGKGARFQV 1033

Query: 212  LLE 214
             L 
Sbjct: 1034 RLP 1036


>gi|125623898|ref|YP_001032381.1| sensor protein kinase kinB [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|12483702|gb|AAG53727.1|AF176556_3 KinB [Lactococcus lactis subsp. cremoris MG1363]
 gi|2182990|gb|AAC45384.1| histidine kinase [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492706|emb|CAL97660.1| Sensor protein kinase kinB [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300070670|gb|ADJ60070.1| sensor protein kinase kinB [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 517

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 60/209 (28%), Gaps = 15/209 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + + H++ +P+ +I    ELL+              +I   S   +  ++   L      
Sbjct: 309 ANVSHELKTPLTSIKGFAELLETDTVSPSETKNFASIIHKESSRLMSLVQDTLLLTKQNQ 368

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLNLFMVAHA 128
            ++                +  +  + S                +    I  NL   A  
Sbjct: 369 RIEKKKLSLSALIQNILQSSSPQISEKSLRLETQIEEITFKTNEQMVHSIFENLIENAIK 428

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVES-TIDSHDIQFY 184
             P  G++ +S+   +++ IFS+  NG      +    F +    +     +    +   
Sbjct: 429 YTPAQGQIFVSLHHEQDKIIFSVTDNGPGLSEIQKERIFDRFYRADESRAEVSGTGLGLA 488

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213
            V     E    +    I       +  L
Sbjct: 489 IVEKNVQELHGTIDVVSILGKGTTFTVNL 517


>gi|46581083|ref|YP_011891.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46450504|gb|AAS97151.1| sensory box histidine kinase/response regulator [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311234760|gb|ADP87614.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1005

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK    + +     +   + + H++ +P+  +   L+LL+   ++ +  +L+ ++  S 
Sbjct: 622 LAKEHAESANRAK--SEFLANMSHELRTPLNGMLGMLQLLEAGDLDRDQNELVHIALDSG 679

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSWT 105
              L+ +      +      + L       E+ +     +                    
Sbjct: 680 RTLLRVLSDILDLSRIEAGRMELRHDRFSPEEAVRQVYDMFAQDARIRGLRLRWRCDELP 739

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
            E         +IL NL   A               +   +     +FS+   G      
Sbjct: 740 CEVWGDGTRLRQILFNLLGNAMKFTHEGTVGVEVCAVRRTEESVRLLFSVSDTGIGIPHD 799

Query: 162 EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +         G+         +    V  L H     L  E        +   L 
Sbjct: 800 RLMSIFEPFTQLDGSTTRRYSGTGLGLGIVRRLVHLMGGGLNVESALGEGTAVHVCLP 857


>gi|89896124|ref|YP_519611.1| hypothetical protein DSY3378 [Desulfitobacterium hafniense Y51]
 gi|89335572|dbj|BAE85167.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 896

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 62/237 (26%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +PI  I   ++L     +E    + ++++   A 
Sbjct: 389 AKEKAEAANRAK--SEFLANMSHEIRTPINGIIGMIDLTLLTSLEKTQRENLKIAKNCAY 446

Query: 62  IRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
              K +     ++              +    +  I +                +  +  
Sbjct: 447 SLFKIINDILDFSKIEAGKLTVEEIEFNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLP 506

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFP 161
                      ++L NL   A     RG       +   +    +  F++   G      
Sbjct: 507 DYYKGDPERIKQVLNNLLSNALKFTERGEVSLAVKRLQGDEDVSDLKFTVMDTGIGIAEE 566

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           ++          DG++        +       L      R+  E           +L
Sbjct: 567 DQLHLFEEFNQVDGSITRKYGGTGLGLAISRKLVEMMGGRIWVESEKGKGSSFGVVL 623


>gi|83942359|ref|ZP_00954820.1| nitrogen regulation protein NtrB [Sulfitobacter sp. EE-36]
 gi|83846452|gb|EAP84328.1| nitrogen regulation protein NtrB [Sulfitobacter sp. EE-36]
          Length = 363

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 68/238 (28%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           M +N     S+      +   + H+I +P+  I  + +LL      +++ + D ++   R
Sbjct: 114 MTQNNSVK-SAAKSAIGMAEMLAHEIKNPLAGITGAAQLLSMNLSTEDLELTDLIVAESR 172

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                     +F  L      +V+    L    +          ++   +         +
Sbjct: 173 RIVKLLEQVEQFGNLMPPERKAVNLHDALDRARRSALLGFGARMKIIEDYDPSLPPALGD 232

Query: 115 RAK---ILLNLFMVAHASLPRGGKVTISVQDSKN--------------ENIFSLKINGNL 157
           + +   ++LNL   A  +    G         ++                   +  +G  
Sbjct: 233 KDQLLQVVLNLIKNASEAAGPSGGTIRLHSYYEHSFRMRRSDGTAQSLPLQIEVIDDGPG 292

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    + +  V    +   +    V  +  ++   +  E +     V    L +
Sbjct: 293 L-PEAIRADVFEPFVSGRENGTGLGLALVSKIISDHGGWITVESVPGK-TVFRISLPR 348


>gi|121725857|ref|ZP_01679157.1| sensor histidine kinase LuxQ [Vibrio cholerae V52]
 gi|121631622|gb|EAX63990.1| sensor histidine kinase LuxQ [Vibrio cholerae V52]
          Length = 857

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|304397822|ref|ZP_07379698.1| integral membrane sensor signal transduction histidine kinase
           [Pantoea sp. aB]
 gi|304354533|gb|EFM18904.1| integral membrane sensor signal transduction histidine kinase
           [Pantoea sp. aB]
          Length = 455

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
            T   D    LG++      +    +   +              + L NL + A      
Sbjct: 295 QTERADLNSVLGEVVAAESGYEREIENAVMPEELMLDINPLSIKRALANLVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G   +       F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGRELH--RAWFQVEDDGPGIKPDQLAHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              ++  L     +   + + A L 
Sbjct: 413 IDAHQGSLEIGESERGGLRIRAWLP 437


>gi|298290750|ref|YP_003692689.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
 gi|296927261|gb|ADH88070.1| multi-sensor signal transduction histidine kinase [Starkeya novella
           DSM 506]
          Length = 770

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 66/259 (25%), Gaps = 46/259 (17%)

Query: 1   MAKNIC-FNLSSMDLVAL--------------------LCSRICHDIISPIGAIHNSLEL 39
           + K+     + ++ L  L                      + + H++ +P+ AI    EL
Sbjct: 495 LRKSQQTLEMQALQLAELAQNYADEKTKAEDANRAKSEFLANMSHELRTPLNAIIGFSEL 554

Query: 40  LDEV------------------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
           ++                         ++ +I      + I    M L        + + 
Sbjct: 555 MESGLFGPLGSDKYNEYCRDIRDSGRYLLDVINDILDMSRIEAGRMHLNLQPVELDEVVT 614

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ 141
               +  V  D   +                R   +I LNL   A    P  G+V++  +
Sbjct: 615 DSIRVMSVRADEKQITVAADTDGAVSLEADKRALKQITLNLLSNAIKFTPENGRVSVRTR 674

Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKI 195
            S    +  ++ +G          +I             T     +       L   +  
Sbjct: 675 RSARAALLVIEDSGIGIPKAAL-AKIGKPFEQVESQFTKTHKGSGLGLAIAKSLVELHGG 733

Query: 196 RLLPEIIDDHNVVLSALLE 214
            +     +     +   L 
Sbjct: 734 TMRIRSSEGVGTTVIIRLP 752


>gi|295090648|emb|CBK76755.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 467

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------R 68
           + + HD  SP+ +I   LE + +      + ++ + +I   +       + M        
Sbjct: 248 ANVSHDFRSPLTSIKGYLEAIIDGTIPPELYEKYLNIIIAETERLNKLTQGMLTLNSLDS 307

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
             F    + D    + D     E           ++++     +  +     ++L NL  
Sbjct: 308 KGFLTRTNFDINRVIKDTAAAFEGTCNAKGITFDLTFSDSIQMVFADLGKIQQVLYNLID 367

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID--SH 179
            A         + I V +   +   S+K  G         + + +    +     D    
Sbjct: 368 NAIKFSHEDSVIYIQVAEKHEKIFVSVKDTGVGIPKDSIKKIWERFYKSDPSRGKDKKGT 427

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +   +     +         L K
Sbjct: 428 GLGLAIVKEIIQAHDENIDVVSTEGVGTEFIFSLPK 463


>gi|295690718|ref|YP_003594411.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432621|gb|ADG11793.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 602

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/245 (8%), Positives = 58/245 (23%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
           + +N      +  L               + + H+I +P+  +    +++    +  +  
Sbjct: 199 LTENRRLKTEAQALALTAETANRAKTEFLATMSHEIRTPLNGVLGMAQIMAAGELSPDQR 258

Query: 51  QLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK- 98
           + +   + S                             D    L  + Q+        + 
Sbjct: 259 RRLDTVTASGQSLLSVINAILDISKIEAGKMEINPAPFDLSAHLDALRQLYGGLARDKEL 318

Query: 99  ----RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
                +     G ++  +    +++ NL   A       G V + V+      +  +  +
Sbjct: 319 DFSLEIAEGAQGWRMGDADRLRQVMSNLISNAIKFTDV-GTVRVFVEGDDKTIVARVTDS 377

Query: 155 GNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      E+                      +       L+      +     +      
Sbjct: 378 GAGIPEAERGRLFTKFAQLDSSSTRRAGGSGLGLAICKTLSELMGGSISYSTAEGGGACF 437

Query: 210 SALLE 214
           +  L 
Sbjct: 438 TVTLP 442


>gi|262381814|ref|ZP_06074952.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301310286|ref|ZP_07216225.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|262296991|gb|EEY84921.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300831860|gb|EFK62491.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 364

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 51/229 (22%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +     S  L +   + I H+I  P+ AI     LL +    +   + I L   + 
Sbjct: 129 MEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGELRQEYINLIQTNN 188

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTG 106
            +                          D    + +     +  +     +       + 
Sbjct: 189 ELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRGVALTYPESLDSF 248

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L N    A      G  +       +NE + S+   G       K   
Sbjct: 249 LLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAM-ENEVLLSVTDTGEGMSEEIKLHV 307

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +      R+               L 
Sbjct: 308 FDRFYKGRNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|261822453|ref|YP_003260559.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Pectobacterium wasabiae WPP163]
 gi|261606466|gb|ACX88952.1| integral membrane sensor hybrid histidine kinase [Pectobacterium
           wasabiae WPP163]
          Length = 951

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 451 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDANRLVLAM 510

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I+                    +
Sbjct: 511 NNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRLMLYCFI 570

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + +             ++L NL   A       G +   V        F ++  G   + 
Sbjct: 571 EPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIVFEVGCRDGYLEFVVRDTGVGIQP 629

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +  E       +    + 
Sbjct: 630 REAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLFGVRIP 688


>gi|238752347|ref|ZP_04613825.1| Multi-sensor hybrid histidine kinase [Yersinia rohdei ATCC 43380]
 gi|238709388|gb|EEQ01628.1| Multi-sensor hybrid histidine kinase [Yersinia rohdei ATCC 43380]
          Length = 927

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           K     L+     A           + I H+I +P+     ++ELL    +     +L  
Sbjct: 378 KERTLALAKSKQAAEQANHRKSEHLTTISHEIRTPLNGALGAIELLQNTPLTSAQQRLAE 437

Query: 55  LSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
            +   +                      +         +     L    QV    I++  
Sbjct: 438 TARQCSYSLLAIINNLLDFSRIESGQLALAQERTALLPLLDQAMLTIHSQVSNKPISLST 497

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            V      E    S+   +IL+NL   A     +G            +  F ++  G   
Sbjct: 498 YVSAEVPLELELDSQRLKQILINLLGNAVKFTQQGNISLNVEHK-DQQLCFMVEDTGCGI 556

Query: 159 RFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + T        S       +       LA      +      +     + +L 
Sbjct: 557 DLQHQQTIFHPFIQTSDHGQGTGLGLTIADNLARMMGGNITLHSQPNKGSRFTLILP 613


>gi|283798621|ref|ZP_06347774.1| sensory box histidine kinase [Clostridium sp. M62/1]
 gi|291073607|gb|EFE10971.1| sensory box histidine kinase [Clostridium sp. M62/1]
          Length = 467

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 62/216 (28%), Gaps = 20/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFM-------R 68
           + + HD  SP+ +I   LE + +      + ++ + +I   +       + M        
Sbjct: 248 ANVSHDFRSPLTSIKGYLEAIIDGTIPPELYEKYLNIIIAETERLNKLTQGMLTLNSLDS 307

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRE---RAKILLNLFM 124
             F    + D    + D     E           ++++     +  +     ++L NL  
Sbjct: 308 KGFLTRTNFDINRVIKDTAAAFEGTCNAKGITFDLTFSDSIQMVFADLGKIQQVLYNLID 367

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTID--SH 179
            A         + I V +   +   S+K  G         + + +    +     D    
Sbjct: 368 NAIKFSHEDSVIYIQVAEKHEKIFVSVKDTGVGIPKDSIKKIWERFYKSDPSRGKDKKGT 427

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    V  +   +   +     +         L K
Sbjct: 428 GLGLAIVKEIIQAHDENIDVVSTEGVGTEFIFSLPK 463


>gi|218691500|ref|YP_002399712.1| aerobic respiration control sensor protein ArcB [Escherichia coli
           ED1a]
 gi|218429064|emb|CAR09871.1| hybrid sensory histidine kinase in two-component regulatory system
           with ArcA [Escherichia coli ED1a]
          Length = 778

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 54/216 (25%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  +  +    +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      ++           +  +
Sbjct: 468 GTGIGLAVSRRLAKNMGGDIMVTSEQGKGSTFTLTI 503


>gi|218676627|ref|YP_002395446.1| putative histidine kinase [Vibrio splendidus LGP32]
 gi|218324895|emb|CAV26666.1| putative histidine kinase [Vibrio splendidus LGP32]
          Length = 1067

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 63/238 (26%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 390 EEAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILSDTPLTPTQRDYVDTIETSSQ 449

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105
           + L  +     ++     ++ +      I + I                 V+  +     
Sbjct: 450 LLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDTP 509

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFP 161
              +       +IL+N    A      G       T++  ++     FS++  G      
Sbjct: 510 ARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQ 569

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++                      +       L      ++  + +          LE
Sbjct: 570 QQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKGKGSCFYFDLE 627


>gi|115377149|ref|ZP_01464363.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|310822860|ref|YP_003955218.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115365858|gb|EAU64879.1| histidine kinase PhoR1 [Stigmatella aurantiaca DW4/3-1]
 gi|309395932|gb|ADO73391.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 452

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYTG 75
             + + H++ +PI AI    E L    ++D  +  +++ +    +    + +      + 
Sbjct: 226 FVANVSHELRTPITAIRGYAETLQTGALQDPTVAPKMVEIIHRQSERLSELVEDLLELSR 285

Query: 76  SVDSLIGLGD--------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                + L                  +   +   +   + V          R   ++LLN
Sbjct: 286 LESREMKLRFADVSLAVAASRAADTVKPKAEGKNIRLELHVPSDLRARGDERAVEQVLLN 345

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTI 176
           L   A    P GG+V +         +  +K  G           F +           +
Sbjct: 346 LLDNAVKYTPAGGRVDVRGTQENGRCVVRVKDTGVGIEPKHLSRIFERFYRVDKGRSRDM 405

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  L    +  +  E   +   V    L 
Sbjct: 406 GGTGLGLSIVKHLLGAMEGEVKVESQPNVGSVFVIFLP 443


>gi|104783312|ref|YP_609810.1| sensor histidine kinase [Pseudomonas entomophila L48]
 gi|95112299|emb|CAK17026.1| putative sensor histidine kinase [Pseudomonas entomophila L48]
          Length = 585

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + S  L AL  + + + H+I  P+      LE L               ++ 
Sbjct: 347 LRTAQEGLVQSAKLAALGQMSAALAHEINQPLTTQRMQLETLRLLLDQGRHEQARLALEP 406

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104
           +             ++     +       +D    +     +         V+  + ++ 
Sbjct: 407 LEQMLTRMAALTGHLKTFARNSPGGLRERLDLATVVDQALHLLEARIRAEDVEVALYLAR 466

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPE 162
                  +    ++L+NL   A  ++         I ++   +    S+  +G      +
Sbjct: 467 PAWVRGDAIRLEQVLINLLRNALDAMADKRYKRLEIRIEADASLWRLSVLDSGGGIADAD 526

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++ D    +    +   +       +  +    L  E +       S  L +
Sbjct: 527 L-AKVFDPFFTTKPVGEGLGLGLAISYGIVIDAGGSLQVENLPG-GARFSLTLPR 579


>gi|49477415|ref|YP_036048.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|49328971|gb|AAT59617.1| sensor histidine kinase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
          Length = 375

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 133 MAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHANGEECEQYVS 192

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++ ++E  +           +   +
Sbjct: 193 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSFCI 252

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I V          +K  G     
Sbjct: 253 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKNFGQCIPD 312

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     +    V +  L 
Sbjct: 313 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIAKSIAELHKGDITVRSNEKE-TVFTIALP 370


>gi|89897136|ref|YP_520623.1| hypothetical protein DSY4390 [Desulfitobacterium hafniense Y51]
 gi|89336584|dbj|BAE86179.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 477

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 26/236 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LI 53
           ++    +      A L + I H++ +P+ A+   +E + +  ++DEV++           
Sbjct: 223 QSESLRMDEER--ARLFAEISHELRTPLTAVQGFVEAIRDGVVQDEVLRERYLDTIYTQT 280

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEK 108
                     L   RL  G        + L       +  +     +    + +    EK
Sbjct: 281 VHIGRLVDDILVLSRLESGNITVEKLPVDLVALAQGVVVSMEAVAASKQNGIYLEKKVEK 340

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
             +  +     +I+ NL   A A+   G       +    E + +++ NG      +   
Sbjct: 341 TVVIGDVDRLEQIIRNLLKNAIAATENGTIRVGVEERYGREVVLTIEDNGTGIAPDDLPH 400

Query: 163 KFTQIV----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +                  +    V  +      R+          V S +  
Sbjct: 401 IWERFYRVKNRQEGRQQEKGSGLGLVIVKKMVQLQGGRIEVTSQLGKGTVFSIIFP 456


>gi|17545050|ref|NP_518452.1| C4-dicarboxylate transport sensor kinase transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17427340|emb|CAD13859.1| probable c4-dicarboxylate transport sensor kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 665

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 62/241 (25%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48
           +       + +  L AL  + + I H++  P+ A+    +    LL+             
Sbjct: 417 LRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRA 476

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           +  L             F   +      V   + L  +  +       V+  +       
Sbjct: 477 IADLTERMGKITAQLKLFAGRSRRRLADVQVRVALDHVLALLRPRLAEVETALHWRLPEA 536

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKINGN 156
              +  +     ++L+NL   A  ++           D           +    ++ NG 
Sbjct: 537 ACVVRADELKLEQVLINLIGNALDAIAANDLPRPGRIDIDIGPADGAPAQLCIVVRDNGP 596

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    + +    +        +       +A +    L    +       +  L 
Sbjct: 597 GI-AADAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSAANVPGGGAQFTLSLV 655

Query: 215 K 215
           +
Sbjct: 656 R 656


>gi|86145206|ref|ZP_01063537.1| putative histidine kinase [Vibrio sp. MED222]
 gi|85836783|gb|EAQ54903.1| putative histidine kinase [Vibrio sp. MED222]
          Length = 1067

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 63/238 (26%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 390 EEAKDHAIQASKAKSSFLANMSHEIRTPLNGVIGISEILSDTPLTPTQRDYVDTIETSSQ 449

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VDKRVQVSWT 105
           + L  +     ++     ++ +      I + I                 V+  +     
Sbjct: 450 LLLSLINDILDFSKIESGMLLISPHSASIRESIYDIASIVAPKAKEQKISVNVDISPDTP 509

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFP 161
              +       +IL+N    A      G       T++  ++     FS++  G      
Sbjct: 510 ARVMIDDHRLRQILMNFMSNAVKFTAEGGVTLSIQTLNKAENNVTLRFSVRDTGIGIDKQ 569

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++                      +       L      ++  + +          LE
Sbjct: 570 QQKQIFEPFAQEDDSTTRQFGGTGLGLAISTQLVELMGGQIQLDSVKGKGSCFYFDLE 627


>gi|84390468|ref|ZP_00991479.1| sensor protein TorS [Vibrio splendidus 12B01]
 gi|84376728|gb|EAP93604.1| sensor protein TorS [Vibrio splendidus 12B01]
          Length = 1005

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N     S      L  + + H+I +P+  +  +  LL + G++        + + S  
Sbjct: 459 ARNAAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLKDTGLDPLQSGYADIINRSGK 516

Query: 62  IRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +                   S D    + D  Q++E   A      D  ++    
Sbjct: 517 NLLAILNDVLDYSKIEAGHLEIRAASFDLYQMVQDTYQLMEGRAAEKKLNFDFHIENDVQ 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     ++IL NL   A      G          + +N  +F +   G      E+
Sbjct: 577 RYWRGDVTRISQILNNLVGNAIKFTESGSVDIFISLDIEDENRVMFEVSDTGVGIDASEQ 636

Query: 164 FTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                +       +       +     +         L 
Sbjct: 637 ACLFDAFTQTDSGRNKTGGTGLGLAISKSIMLAMNGDIGVHSEEGEGSQFWFSLP 691


>gi|219667005|ref|YP_002457440.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537265|gb|ACL19004.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 540

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 69/236 (29%), Gaps = 26/236 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LI 53
           ++    +      A L + I H++ +P+ A+   +E + +  ++DEV++           
Sbjct: 286 QSESLRMDEER--ARLFAEISHELRTPLTAVQGFVEAIRDGVVQDEVLRERYLDTIYTQT 343

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSWTGEK 108
                     L   RL  G        + L       +  +     +    + +    EK
Sbjct: 344 VHIGRLVDDILVLSRLESGNITVEKLPVDLVALAQGVVVSMEAVAASKQNGIYLEKKVEK 403

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
             +  +     +I+ NL   A A+   G       +    E + +++ NG      +   
Sbjct: 404 TVVIGDVDRLEQIIRNLLKNAIAATENGTIRVGVEERYGREVVLTIEDNGTGIAPDDLPH 463

Query: 163 KFTQIV----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +                  +    V  +      R+          V S +  
Sbjct: 464 IWERFYRVKNRQEGRQQEKGSGLGLVIVKKMVQLQGGRIEVTSQLGKGTVFSIIFP 519


>gi|228940283|ref|ZP_04102854.1| hypothetical protein bthur0008_29320 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973199|ref|ZP_04133788.1| hypothetical protein bthur0003_29590 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982218|ref|ZP_04142504.1| hypothetical protein bthur0002_53690 [Bacillus thuringiensis Bt407]
 gi|228777505|gb|EEM25786.1| hypothetical protein bthur0002_53690 [Bacillus thuringiensis Bt407]
 gi|228786395|gb|EEM34385.1| hypothetical protein bthur0003_29590 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228819409|gb|EEM65463.1| hypothetical protein bthur0008_29320 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 436

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    +++    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASIELTTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESRLGEGSTFTFKLP 431


>gi|209809192|ref|YP_002264730.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208010754|emb|CAQ81147.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 943

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 64/230 (27%), Gaps = 27/230 (11%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKF 66
           S    +   + + H++ +P+  I    ++++    +     ++  L+        +    
Sbjct: 407 SNKAKSTFLATMSHELRTPLNGILGMAQIIESNIKDPEQHKQINVLLESGDHLLSLLNDI 466

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------------E 114
           +  +      ++      D + VI         +      E I   +             
Sbjct: 467 LDFSKIEQNKLELDNLPFDFKDVISPIANTYIPICEDKGLELIIHDQINAGAVFNGDKPR 526

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +I+ NL   A     +G             SK   +  ++ +G      E+   I D 
Sbjct: 527 IRQIIFNLISNAVKFTHKGSITLTFSHTLTAKSKQGLLIKIEDSGIGI-REERLDYIFDP 585

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +              +    V  L    +  +  + ++      + +L 
Sbjct: 586 FIQAESATTRQYGGTGLGLAIVKQLVDAMQGYISVKSVEGEGTGFTIMLP 635


>gi|254429345|ref|ZP_05043052.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195514|gb|EDX90473.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 771

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 54/238 (22%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+      S +   +   + + H+I +P+  I    +LLD   +       +     SA
Sbjct: 273 MARKEALKASHIK--SEFLANMSHEIRTPLNGILGFTKLLDRSPMTPRQEDYLSTIHKSA 330

Query: 61  IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--AVDKRVQVSW 104
                               + L        D +  +  +   +           +    
Sbjct: 331 ESLLAIINDVLDFSKIEAGKLSLDHTPLNLHDLIEDVQTLLAPMAQERGLEQAAIIYSDV 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       ++L NL   A     +G  V  ++ +           ++   G     
Sbjct: 391 PVALLGDPLRIRQVLTNLVSNAIKFTDQGSVVVRAMLEEDRGAEAIIKITVTDTGPGLNP 450

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +                      +       L       +  +  +         L
Sbjct: 451 EAQKDLFSAFTQADQSARRQEGGTGLGLAISKRLVEGMGGEIGIDSREGRGSTFWFTL 508


>gi|167465445|ref|ZP_02330534.1| hypothetical membrane protein [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 466

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 63/224 (28%), Gaps = 21/224 (9%)

Query: 3   KNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELL----------DEVGIEDEV 49
           +++   +   D   ++  + +   H+I +P+ +I   L++L           E G  D +
Sbjct: 245 RSLEAQVQRSDRLAMIGQIAAGTAHEIRNPLTSIKGFLQMLNKSFTEQGMCKEKGFTDIM 304

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +  I   +      L   +        VD    +  +  +I +   +     V      +
Sbjct: 305 LAEIDRVNDLVNEFLLLSKPKHVVYKPVDLPSVIKGLLPIINNEAILHDVQLVYEPAISL 364

Query: 110 DLSRERA----KILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                      ++ LN+      ++       +   V   +      ++ NG        
Sbjct: 365 PPVIADQELLKQVFLNICKNGIEAMANGGKLMIIEKVNIDEKRVNIEIRDNGPGIPV-FV 423

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             +I D    +      +       + H+    +          
Sbjct: 424 LDKIFDPFFTTKEQGTGLGLSVCQQIVHDMGGHIRV-SSKGFGT 466


>gi|148975158|ref|ZP_01812082.1| hypothetical protein VSWAT3_17233 [Vibrionales bacterium SWAT-3]
 gi|145965082|gb|EDK30332.1| hypothetical protein VSWAT3_17233 [Vibrionales bacterium SWAT-3]
          Length = 654

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 68/232 (29%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELL---DEVGIEDEVMQL 52
           +       + +  L AL  L   I H+I  P+ A+++   S +L    +     +E ++ 
Sbjct: 420 LRVTQDELIQAGKLAALGQLSVGITHEINQPLTAMNSHVRSAQLWLGKERPDRAEENLKK 479

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----TGE 107
           I +         + ++     +      + L  +     D     +   +          
Sbjct: 480 IEILLDKVAAITRHLKAFSRKSDGKIDNVELDKVIGDAIDLFETRQSRVLIHYSPQSDQM 539

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFT 165
               S    ++L+NL   A  ++    +  +S+           S+K NG      +   
Sbjct: 540 VRANSIRLEQVLVNLISNALDAVEHKEQPQLSISTQDQLNTIQISVKDNGLGIPEEDIPY 599

Query: 166 QIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + D           +         +  +    +  E I+         L K
Sbjct: 600 -LFDPFYTRKTTGKGLGLGLSIAYNIIKDFGGSIHVESIEHQGTTFIVTLPK 650


>gi|159900425|ref|YP_001546672.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893464|gb|ABX06544.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 850

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 78/234 (33%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +     L    L AL  L S + HD  + +  I  ++++L       E  + +R+   
Sbjct: 470 LEQTQDHLLFVEKLRALGELASGVTHDFNNLLAGILGNVQVLMGELQNPEQRETLRVIER 529

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----------VIEDFIAVDKRVQVSWT-- 105
           +A    + ++    +    D  I                  V     A ++ V +     
Sbjct: 530 AAKDGAETVKRIQRFARKDDGEIDAPVELHELAEDALDLTRVRWRNAAQEQGVNIELQRE 589

Query: 106 ----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     + E  ++L NL + A  ++P GG + ++     +E   S+  +G      
Sbjct: 590 ILNVPTIRGHAAELREVLTNLIINAVDAMPNGGMLRVATGQRGSEVFVSVADSGIGM-SE 648

Query: 162 EKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I D    +  +  + +       +   +  R+  + I+      +  L 
Sbjct: 649 EVKARIFDPFFTTKGERGNGLGLAVSAAIVSRHSGRIEVQSIEGRGTNFAIWLP 702


>gi|89055033|ref|YP_510484.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
 gi|88864582|gb|ABD55459.1| periplasmic sensor signal transduction histidine kinase [Jannaschia
           sp. CCS1]
          Length = 588

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 66/233 (28%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           + +       S  L AL  + + + H++  P+ A+   L     LL     E        
Sbjct: 348 LEEAELSLQQSQKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRKRTEEAASSFQR 407

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---- 104
           +  LI            + R        VD    L     ++E  +  D           
Sbjct: 408 IDDLIERMGAITRQLKSYARKGGDALEPVDMRDALKGALTMMEPQLRSDTVHITQSLPRK 467

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +       ++++NL   A  ++     K    +    +E + +++ +G      + 
Sbjct: 468 PALVMADRLRLEQVIINLLRNALDAMGGADEKELDLIIVEGDEVVLTVRDSGPGI---DD 524

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +    +   +       +  +   RL     +    V    L 
Sbjct: 525 LDALFEPFYTTKKPGEGVGLGLAISSGIVKDLGGRLSARNGEQEGAVFEIRLP 577


>gi|319953201|ref|YP_004164468.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga algicola DSM 14237]
 gi|319421861|gb|ADV48970.1| integral membrane sensor signal transduction histidine kinase
           [Cellulophaga algicola DSM 14237]
          Length = 471

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 60/231 (25%), Gaps = 22/231 (9%)

Query: 6   CFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIR 54
              +S++ L           +  ++ H+I +P+  +  +++  +   +    +   +L  
Sbjct: 240 ELEISAVKLAKSEREQAWREMAKQVAHEIKNPLTPMRLTVQSFERKFDPADPEVRNKLNE 299

Query: 55  LSSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            S            +              +    +       +     +    +      
Sbjct: 300 YSKTLIQQIDTMSNIAGAFSNFAEMPAQQNETLNVVKIVKLGLDIFNESYIHFIADEEEI 359

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKF 164
                  +  ++L NL   A  ++P      I  +V    N    S+  NG      E  
Sbjct: 360 IAKLDRTQLIRVLTNLVKNAIQAIPDVAAPRILVTVSSEGNFVKISVADNGIGI-ADEFK 418

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I +    +      +    V  +       +          V +    +
Sbjct: 419 EKIFEPKFTTKSSGMGLGLGMVKTIVETYNGTIDLTSQPGKGTVFTVRFPR 469


>gi|282883276|ref|ZP_06291874.1| two-component sensor histidine kinase [Peptoniphilus lacrimalis
           315-B]
 gi|281296906|gb|EFA89404.1| two-component sensor histidine kinase [Peptoniphilus lacrimalis
           315-B]
          Length = 559

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 66/230 (28%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
           +   ++ ++ L     S + H++ +P+ +I    ELL       ++   +  +L    + 
Sbjct: 326 DETESIRALRLRDEFSSNVSHELKTPLTSICGFSELLANNMVDSDETKKEFYQLIYRDSK 385

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----------EDFIAVDKRVQVSWTGEKID 110
             L  +      +G       + +   +             +    + + ++   G   +
Sbjct: 386 RLLNLVEDIMKISGLEKEATFVREDINLRELIEEIFKTQKIEIEKRNIKTKLVGQGRVYE 445

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                 ++  NL           G + + +++  ++    +  +G      +    F + 
Sbjct: 446 NKTMMWELFSNLINNGIKYNKDNGNLDVLIKEDNDKVFVEVVDSGIGISSDDLERIFERF 505

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      I    +    V  +       +            +  L K
Sbjct: 506 YRVDKSRSKKIGGTGLGLSIVKHVLSSIDGDVEVSSKMGLGTKFTLSLYK 555


>gi|261251233|ref|ZP_05943807.1| sensor protein TorS [Vibrio orientalis CIP 102891]
 gi|260938106|gb|EEX94094.1| sensor protein TorS [Vibrio orientalis CIP 102891]
          Length = 959

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 63/235 (26%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+++    S      L  + + H+I +P+  +  +  LL + G++ +    + + + S  
Sbjct: 459 ARSLAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLKDAGLDSKQGYYVDVINRSGT 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105
             L  +     Y+      + +  I+  +   +                     ++    
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRPIDFNLYSMVDDTKHLLDGRAKEKSLELACTIESDVD 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     +++L NL   A                 D     +F +  +G      E+
Sbjct: 577 KFWRGDVTRISQVLNNLVGNAIKFTDRGYVDIYVSLDPDLDGNVLFEVSDSGVGISEQEQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T        +          +       +      +LL E            + 
Sbjct: 637 VTLFDAFTQATGGLSSKGGTGLGLAISKRIVEAMNGKLLVESHVGEGSRFWFSIP 691


>gi|261206780|ref|ZP_05921471.1| hypothetical protein EFZG_01101 [Enterococcus faecium TC 6]
 gi|260078910|gb|EEW66610.1| hypothetical protein EFZG_01101 [Enterococcus faecium TC 6]
          Length = 286

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           + K+    +  ++    L     S + H+  +P+  I   ++LL      +   +  + +
Sbjct: 50  LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 109

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVS 103
           +I   +  + +    ++L       +                I  +   +      + + 
Sbjct: 110 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 169

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                   + E   ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 170 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQINGQIHIKLFETATEIVLEVTDSGVGMNEET 229

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 230 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 285


>gi|215402548|ref|ZP_03414729.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 02_1987]
 gi|289744483|ref|ZP_06503861.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 02_1987]
 gi|289685011|gb|EFD52499.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 02_1987]
          Length = 485

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L           + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVGMLLSRIESEASRMGLLVDDLLLLARLDAHRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KILLNLFMVAHAS 129
           L  ++ +     A      +           +               ++L NL   A   
Sbjct: 318 LCRVDLLALASDAAHDARAMDPKRRITLEVLDGPGTPEVLGDESRLRQVLRNLVANAIQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI--DSHDIQFY 184
            P    VT+ V    ++ I  +  +G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTEGDDAILEVADDGPGMSQEDALRVFERFYRADSSRAHASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVDSLVAAHGGAVTVTTALGEGCCFRVSLPR 468


>gi|170780677|ref|YP_001709009.1| putative membrane-embedded two-component sensor kinase [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|169155245|emb|CAQ00346.1| putative membrane-embedded two-component sensor kinase [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 566

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDE--------VMQLIRLSSMSAIIRLKFMRL 69
             + + H++ +P+ +I   +EL+ +   ED+         + ++  ++   +  +  +  
Sbjct: 338 FVASVSHELKTPLTSILGYVELIADDLEEDDLDDRITAARLAIVERNAQRLLGLIGDLLT 397

Query: 70  AFGYT-----GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121
           A  +        VD    + +   VI           V    E++    +     ++L N
Sbjct: 398 AAQHRLAVNRNLVDVGEIVENALDVIRPHAQASGVTLVEPEYEELVAEVDAVRIGQVLDN 457

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STI 176
           L   A    P GG VT +V          +  +G      +                ST+
Sbjct: 458 LLSNAVKYTPEGGTVTTAVGVEGEHLSLCVTDDGVGMSAEDTAQLFTRFFRTNSARASTV 517

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +   +  E        +   L 
Sbjct: 518 AGVGLGLSITRSIVEAHDGSIEVESTLGTGTTMRVRLP 555


>gi|154252416|ref|YP_001413240.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
 gi|154156366|gb|ABS63583.1| multi-sensor hybrid histidine kinase [Parvibaculum lavamentivorans
           DS-1]
          Length = 846

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 55/240 (22%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK    N +      L  + + H++ +P+  +    +LL    +  E    +     S  
Sbjct: 422 AKEAAENANRAKSAFL--ATMSHELRTPMNGVLGMADLLLSGPLTQEQRDGVTTIRESGE 479

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWT 105
             L  +      +      + L          +     V                     
Sbjct: 480 CLLTILNDILDLSKLEAGRLELEPEPTSPMTVLETVVEVLRPNAKEKGLVLTKSEEGHIP 539

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLARF 160
              +       +IL NL   A    P+G                 E +F+++  G     
Sbjct: 540 QRIMSDPTRLRQILFNLVGNAIKFTPQGEVSVSLAARACDDPDTAELVFTVRDTGIGIPE 599

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++             T     +       L       +  E  +      +  L 
Sbjct: 600 AMLP-RLFTRFQQADSSISRTYGGTGLGLAITRELTTLMNGTIEVESTEGKGSCFTVRLP 658


>gi|26988382|ref|NP_743807.1| multi-sensor hybrid histidine kinase [Pseudomonas putida KT2440]
 gi|24983135|gb|AAN67271.1|AE016353_11 sensor histidine kinase/response regulator GacS [Pseudomonas putida
           KT2440]
          Length = 917

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 274 MARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKSA 331

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      +    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++     +   +   S++  G     
Sbjct: 392 PASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSP 451

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +  T     +              +       L  +    +  +           S  L
Sbjct: 452 QDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNL 511

Query: 214 EK 215
            K
Sbjct: 512 PK 513


>gi|42524723|ref|NP_970103.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
 gi|39576933|emb|CAE78162.1| sensory transduction histidine kinase [Bdellovibrio bacteriovorus
           HD100]
          Length = 626

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 68/233 (29%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60
           +         +L     S + HD+ +PI  I    +++  D V + ++  + +     S+
Sbjct: 386 QKNKLLSQVEELKTNFISMMSHDLKTPIARIQGMTDVILTDSVALSNQQREAVDTIKHSS 445

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTG 106
                     +      +  V   +   DI  ++++ I   + +          ++    
Sbjct: 446 DDLLKFINAILSYGKIESQGVQLNMQSKDINNLLQEVIRKHEFLARVKRIQIVSELEPMF 505

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++  NL   A    P   K+ +S +++ ++ I  +   G      E    
Sbjct: 506 PVQVDPELMKQVFSNLVENAIKYSPEDTKIMVSSEETPSKVIVQVADQGPGIPQDELQNI 565

Query: 167 IVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            I    +  Y        +   +  E    +    +  L 
Sbjct: 566 FMKFFRSKNVKSSPIKGSGLGLYLAKYFTELHHGNIFVESSHGNGSTFTVELP 618


>gi|153217387|ref|ZP_01951138.1| nitrogen regulation protein [Vibrio cholerae 1587]
 gi|153803488|ref|ZP_01958074.1| nitrogen regulation protein [Vibrio cholerae MZO-3]
 gi|153825551|ref|ZP_01978218.1| nitrogen regulation protein [Vibrio cholerae MZO-2]
 gi|153828371|ref|ZP_01981038.1| nitrogen regulation protein [Vibrio cholerae 623-39]
 gi|229513675|ref|ZP_04403139.1| nitrogen regulation protein NR(II) [Vibrio cholerae TMA 21]
 gi|124113593|gb|EAY32413.1| nitrogen regulation protein [Vibrio cholerae 1587]
 gi|124120975|gb|EAY39718.1| nitrogen regulation protein [Vibrio cholerae MZO-3]
 gi|148876201|gb|EDL74336.1| nitrogen regulation protein [Vibrio cholerae 623-39]
 gi|149740836|gb|EDM54927.1| nitrogen regulation protein [Vibrio cholerae MZO-2]
 gi|229349552|gb|EEO14508.1| nitrogen regulation protein NR(II) [Vibrio cholerae TMA 21]
          Length = 354

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 119 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPTLMEYTQIIIEQA 177

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 178 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDYDPSLPNILMDT 237

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 238 DQIEQALLNIVSNAAQILANQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 296

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 297 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 349


>gi|310824765|ref|YP_003957123.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397837|gb|ADO75296.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 491

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 66/234 (28%), Gaps = 27/234 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
           + +     LS         + + HD+ +P+GA+      +        E+++ +   L  
Sbjct: 244 LKRQREVQLS-------FIAGVAHDLRNPLGALKLGASTMRPGQPLPAEEKIRERFTLIV 296

Query: 58  MSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQV--SW 104
                  + +                     D    + +   + +      + V      
Sbjct: 297 RQVERLERMVEDLLDTARIEAGRLELRLERYDLRGLVHEAVALHQGLSPAHELVSQLPEK 356

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      +++L NL   A    P GG V++ +Q +  E   +++ +G      E+ 
Sbjct: 357 AVSVQCDPTRISQVLNNLLSNAIKYSPEGGLVSVELQTTGGEAQVTVRDSGVGIPSTERE 416

Query: 165 TQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        ++    I    +       +   +  R+  E            L 
Sbjct: 417 SIFEPFRRSTSNRDTIPGVGLGLSVARRIIEAHGGRIAVESTPGVGSTFHFHLP 470


>gi|254512907|ref|ZP_05124973.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
 gi|221532906|gb|EEE35901.1| sensory box sensor histidine kinase/response regulator
           [Rhodobacteraceae bacterium KLH11]
          Length = 478

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 64/237 (27%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------------GIE 46
           + K    + ++    +   S + H++ +P+ +I  S++L                    +
Sbjct: 237 LRKEHEKSRAAYKAKSEFVSTMSHELRTPLTSIKGSVDLAQSGKLGKTSKNVSAALKMAQ 296

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQV 102
               +L++L       +              D +  + D    +    +      +    
Sbjct: 297 RNCDRLLKLIDQILDFQSAESGQMTFERQRFDLVELITDTFSSVRPSASEKGISLRSEFP 356

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               E     +   +++ N+   A    P+   + + +Q    +     +  G      +
Sbjct: 357 DREVEITGDKQRLQQVIDNILTNAINFSPKDSDIVVFLQTDNGKVRILFRDTGIGLSESD 416

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +  ++ D           +I    +       +   +   +      D        L
Sbjct: 417 E-ARVFDPFTQLDSSDSRSIGGTGLGLSVSRQIVEAHGGTITYHKNSDTGTTFVVEL 472


>gi|242279336|ref|YP_002991465.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242122230|gb|ACS79926.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 560

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 72/230 (31%), Gaps = 25/230 (10%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------------VGIEDEVM 50
           + S  + +L  + + + H++ +P+  I  S   + +                     ++ 
Sbjct: 317 MQSSKMASLGKMAAGVAHEVNNPLSIIRESAGWIRDMISDGGFEGVKDLPNLEEALGDIE 376

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKI 109
           + +  +       L F R        VD    + +    +  + +     V    + +  
Sbjct: 377 RHVERARSVTHRMLGFARSMEPAQDDVDLNQLVRETVSFLDNEILYRTIWVSYDLSPDLP 436

Query: 110 DLSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            +S +  ++    LNL   A  ++   G + +S + + +     +  +G     PE  ++
Sbjct: 437 SISTDFNQVQQVVLNLMENAIDAVGNDGSIKLSTRSNGDFVELEIADSGPGI-PPELLSK 495

Query: 167 IVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D    +    +   +    +  +       +    + +        L 
Sbjct: 496 VFDPFFTTKSAGEGTGLGLSIIYTILKRVGGSVKARNLPEGGAQFIVRLP 545


>gi|254412494|ref|ZP_05026268.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196180804|gb|EDX75794.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 411

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 58/222 (26%), Gaps = 23/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
              +   H++ +P+  I    ++L       +    +++++    +    L  +     +
Sbjct: 173 QFLATTSHELRTPMNVIIGFAQMLLLQRHGSLTLSQLKMVQCILKNGNHLLSLLSEVLDF 232

Query: 74  TGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI-------DLSRERAKI 118
                       +       +   + D   +  +  +  + +         +      K+
Sbjct: 233 AQIEAGALELKAEEFNIDQVVNSTVNDVRPLALQKGLDLSIKIQLKNTSVINDRSRLHKV 292

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVE 173
           L +L M A      G       +      I  ++  G      E        + VD  + 
Sbjct: 293 LKHLLMNAVKFTKSGSIWVNVYEVESQRLIIDVEDTGIGLSQAELDYIFDAFRQVDQTIT 352

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +       L    + ++  E       +    L +
Sbjct: 353 RQYPGTGLGLAMTKSLVQLMQGKITVESQVGEGSIFRVELPR 394


>gi|119468615|ref|ZP_01611667.1| sensory transduction histidine kinase [Alteromonadales bacterium
           TW-7]
 gi|119447671|gb|EAW28937.1| sensory transduction histidine kinase [Alteromonadales bacterium
           TW-7]
          Length = 675

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 70/242 (28%), Gaps = 29/242 (11%)

Query: 1   MAKNIC-FNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + + +      +  L    ++L ++I H++ +P+  I   L  L +   E +  + I+++
Sbjct: 284 LREELKSKKAEAERLLFDRSMLFAKISHELRTPLNGITGMLTTLIDEHDEQKRTEKIKVA 343

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------------- 101
             S+ I L  +     ++      + L     +++        +                
Sbjct: 344 LRSSDILLNIINEVLDFSKINHGELKLEPNNILLKTVFTDLFSLYTPLFNDKNIVFEVNN 403

Query: 102 -VSWTGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNL 157
            ++        +   ++I  NL   A     +        ++  ++      ++  +G  
Sbjct: 404 EIADDCWAYCDNTRLSQITSNLLSNALKFTEQGFVNLDTFLTKNNNALALNINVTDSGRG 463

Query: 158 ARFPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    +     +      T     +    V  L      ++      +     S  
Sbjct: 464 MTAAFL-ESLFSPFTQEVDAKNTKGGTGLGLAIVKELVEYMGGKIEVTSEVNKGTTFSVY 522

Query: 213 LE 214
           + 
Sbjct: 523 IP 524


>gi|159898664|ref|YP_001544911.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891703|gb|ABX04783.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 755

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 63/222 (28%), Gaps = 21/222 (9%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMR 68
           L +   + + H++ +P+ AI N    LD          +   +++  +     +    + 
Sbjct: 256 LKSRFLANMSHELRTPLNAIINFTAFLDRYGEFSERQRELQERVLYNADHLLGLINDILD 315

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGE-----KIDLSRERAK 117
           L+    G ++ +     +E +I   +        DK +++           +       +
Sbjct: 316 LSKIEAGRMELMYEKTQLEPIITGVMATASGLTRDKGLELELDMPEELPTMVIDKVRIRQ 375

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----- 172
           +LLNL   A     +G       Q        S++ +G       +     +        
Sbjct: 376 VLLNLLSNAVKFTEQGQINVTISQPDPETVQISVQDSGIGIAPEHQQQIFEEFQQVQNEV 435

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +      LL   +   +  E            L 
Sbjct: 436 THQYQGTGLGLPISKLLVEMHGGNMWLESTPGKGSTFFFSLP 477


>gi|89096379|ref|ZP_01169272.1| sporulation kinase B [Bacillus sp. NRRL B-14911]
 gi|89089233|gb|EAR68341.1| sporulation kinase B [Bacillus sp. NRRL B-14911]
          Length = 410

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 65/218 (29%), Gaps = 13/218 (5%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQLIRLSSMSAI 61
           L  + +V  + + I H+I +P+  +   ++ L E   +D+       +++ +  ++    
Sbjct: 185 LDKLTMVGQMAAAIAHEIRNPLTTVRGFIQYLSEKTTDDQVKSFSPLILEELDRTNKIIT 244

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             LK  +        ++    + D   ++           +        +  +   +   
Sbjct: 245 DYLKIAKPEQFNLTVMNLEKVVRDSVDLLRPLANYIDTSILFEEQGHHFVRGDEHHLKQA 304

Query: 122 LFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           +  V   ++    K        +           +  NG      E+  +I      +  
Sbjct: 305 IMNVIKNAIESTEKDGQIQITIQPNQLSNTVSLKVIDNGIGM-TEEQLKKIGLPFYTTKS 363

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +  E   R+  E   +    ++ +L 
Sbjct: 364 KGTGLGSMVTNKIIREMDGRIEYESEVNRGTAVTIILP 401


>gi|325262479|ref|ZP_08129216.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
 gi|324032311|gb|EGB93589.1| sensory box sensor histidine kinase/response regulator [Clostridium
            sp. D5]
          Length = 1294

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 66/241 (27%), Gaps = 27/241 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
            + K +     +    +   S + HDI +P+ AI     L    +D+     + ++ I +S
Sbjct: 898  LEKALELAEEANRAKSEFLSAMSHDIRTPMNAIMGMTALACAHIDDQDKVSDCLKKISIS 957

Query: 57   SMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            S   +  +  +                       +  L  I +       +   V+    
Sbjct: 958  SKHLLSLINDVLDMSKIERSQITLGRMKILLSRLMHDLAAIIEPQARAAGIHFYVRTDDI 1017

Query: 106  GEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTIS-------VQDSKNENIFSLKINGN 156
              +          +I +N+   A    P GG V            +      F+++  G 
Sbjct: 1018 CNEKFYGDVLRLNQIFINILSNAIKFTPEGGTVDFMVEELPAVRCEDHVRYRFTIRDTGV 1077

Query: 157  LA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      F      +  S ++   +       L       +  E  +    V    L
Sbjct: 1078 GIKAEFLEHIFEPFTRSSNTSRVEGTGLGLSITKGLVDLMGGVITVESKELQGTVFRVEL 1137

Query: 214  E 214
            E
Sbjct: 1138 E 1138


>gi|308176013|ref|YP_003915419.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
 gi|307743476|emb|CBT74448.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
          Length = 464

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 58/231 (25%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSM 58
           M   +   LS+      L   + H++ +P+  I+  LEL+D  +     +   +      
Sbjct: 229 MLDRLDGALSAQR---QLLDDVGHELRTPVTIINGHLELMDPNDPEDVAQSRDIAVDELR 285

Query: 59  SAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              + +  +       R  F     V+    L DI        A   RV           
Sbjct: 286 RMSLLINDLVTLAKSNRTDFLQVKPVEVGKLLDDILDKARGLGARQWRVDYRTEATVALD 345

Query: 112 SRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPE---K 163
                + +L L   A                I          + +   G   +  +    
Sbjct: 346 PIRTTQAMLQLCANAVKFSAEDSRIGLGNEIIRDAHGGTTLRWWVSDAGVGIQAEDLERI 405

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   G          +    V  +A  +  R+               + 
Sbjct: 406 FERFGRGQNSVRSSGSGLGLNIVQAIAETHGGRVWVNSEYGKGSTFYIDMP 456


>gi|229009843|ref|ZP_04167063.1| hypothetical protein bmyco0001_3130 [Bacillus mycoides DSM 2048]
 gi|228751461|gb|EEM01267.1| hypothetical protein bmyco0001_3130 [Bacillus mycoides DSM 2048]
          Length = 369

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 69/226 (30%), Gaps = 20/226 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +     +     +  + + I H+I +P+ A+    ++  E   ED +     +     
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQIQKERNPEDTM--SYEIMLQEI 202

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDI----------EQVIEDFIAVDKRVQVSWT-GEKI 109
                F+           +     +I           +       V   +QV        
Sbjct: 203 ERINGFVSELMLLGKPKPTNYEWCNIGEILLYVVQLMESYATQYKVKFNLQVDGNLPVIN 262

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              ++  ++LLN+      S+P GG + I + + +      S++  G      EK  +I 
Sbjct: 263 GDDKQLKQVLLNIIKNGIESMPGGGNIRILAYEKAGENLCISVEDQGLGI-ENEKIEKIG 321

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  +   +       +  E++  +  E        +   L 
Sbjct: 322 KAFYTTKENGTGLGLMITYKIIEEHQGSIAIESSMGIGTKVEIYLP 367


>gi|254410162|ref|ZP_05023942.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183198|gb|EDX78182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 503

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 65/203 (32%), Gaps = 12/203 (5%)

Query: 24  HDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAII-------RLKFMRLAFGYTG 75
           H++ +PI  I   LEL D+    + E ++L+                  K     F    
Sbjct: 285 HELRTPITIIRGHLELWDDDPKAQQETLELVLDELDRMNRFVNDLLLLAKAEWRDFLQVE 344

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK 135
            +D      ++    +     + ++    +G+ +   +   + ++NL   A      G +
Sbjct: 345 IIDIDSFTEELFAKAKALAERNWQLDAIASGQIVADRQRLTQAIMNLAENATQHTEAGEQ 404

Query: 136 VTISVQDSKNENIFSLKINGNLA---RFPEKFTQI-VDGNVESTIDSHDIQFYYVILLAH 191
           + +    +++   F ++  G           F +     N     +   +    V  +A 
Sbjct: 405 IALGSAINRHNAYFWVRDTGKGIDSANQKRIFERFARLPNSRRRSEGAGLGLSIVQAIAQ 464

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            ++ ++            + +L 
Sbjct: 465 AHRGQVRLNSRLGAGAQFTIVLP 487


>gi|153829850|ref|ZP_01982517.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39]
 gi|229528389|ref|ZP_04417780.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           12129(1)]
 gi|148874651|gb|EDL72786.1| sensor histidine kinase LuxQ [Vibrio cholerae 623-39]
 gi|229334751|gb|EEO00237.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           12129(1)]
 gi|327485743|gb|AEA80149.1| Autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           LMA3894-4]
          Length = 857

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|147672178|ref|YP_001215511.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|262168577|ref|ZP_06036273.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27]
 gi|146314561|gb|ABQ19101.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|227015203|gb|ACP11412.1| sensor histidine kinase LuxQ [Vibrio cholerae O395]
 gi|262023106|gb|EEY41811.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC27]
          Length = 857

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|107022927|ref|YP_621254.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116686830|ref|YP_840077.1| multi-sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
 gi|105893116|gb|ABF76281.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia AU
           1054]
 gi|116652545|gb|ABK13184.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia cenocepacia
           HI2424]
          Length = 768

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 60/234 (25%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                   +S  L   L + + H++ +P+  I+  +E+L   G      Q I     SA 
Sbjct: 381 RDARDQADTSNRLKDELLATVSHELRTPLNVIYGWIEVLRNTGDHALQHQAIDAIDRSAR 440

Query: 62  IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTG 106
              + +                    VD +    D     +   +    +      +   
Sbjct: 441 SLTRMVGDILDASSLATGKLRLDATPVDVVRLFSDQVGTFQTAASSAGILLEFDCAASAC 500

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +    ++L NL   A    P GG VT+ +       + ++   G           
Sbjct: 501 IVSGDAERLRQMLSNLISNALKFTPGGGSVTVGLARDGGHAVLTVADTGQGIATEFTPYV 560

Query: 167 IVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                              +    V  +A  +   +       D     +  L 
Sbjct: 561 FDMFRRADDSPASPRRGLGLGLSIVRHIAQLHGGNVTVASAGRDRGTTFTVTLP 614


>gi|163847987|ref|YP_001636031.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222525869|ref|YP_002570340.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163669276|gb|ABY35642.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222449748|gb|ACM54014.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 379

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLE-LLD-----EVGIEDEVM 50
           +A        +++        L   + H++ +P+  I   +E +LD     +      V+
Sbjct: 136 LAAQFNMMAEALERAEQRRVALIGDVAHELRTPLATIAGYVEGILDGVVETDEATWALVL 195

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWT 105
             +           +  R+         + +    +      ++   F A +  + V+  
Sbjct: 196 DEVNRLRRLTDDLQQLSRVESRQITLAPTPVDPAHLIEAAVTRLTPQFTAKNIELHVNIE 255

Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
                +  +     ++L+NL   A    P GG+V I  + +     F ++ +G       
Sbjct: 256 QHLPPVWADSDRILQVLINLLGNALQYTPGGGRVVIGAEHASEAIRFWVQDSGIGIAAEH 315

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
            P  F +    +           I       L   +  ++                L 
Sbjct: 316 LPHLFERFYRVDKSRTRATGGAGIGLTICKGLVEMHGGQIWATSAGPGCGATFYFTLP 373


>gi|329851158|ref|ZP_08265915.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328840004|gb|EGF89576.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 1409

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 66/235 (28%), Gaps = 23/235 (9%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            ++I        + +   S   H++ +P+ AIH SL +L              ++ L   +
Sbjct: 1166 QDITQRREMEHIQSEFVSVASHELRTPLTAIHGSLGMLAGPMASQLPETAGRMVDLAHRN 1225

Query: 57   SMSAIIRL------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S   +  +            +        + +      +   +   + +        V  
Sbjct: 1226 SERLLGLVNDILDIDKLTSGQMRFDMQVESLAELVAQSVEANQPFADRYGVSMHLSPVDA 1285

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       A+++ NL   A     R G++ I VQ    +   ++  +G         
Sbjct: 1286 GLRARLDGDRFAQVMANLLSNAAKFSHREGRIDIDVQIESGQVRITVTDHGVGIPEAFRG 1345

Query: 163  -KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +    +  +        +  Y    +      +L  + ++         L 
Sbjct: 1346 KIFERFSQADSSMTRNKGGTGLGLYIARQMVERMGGQLGFDSVEGEGTSFWIKLP 1400


>gi|327537864|gb|EGF24566.1| signal transduction histidine kinase with CheB and CheR activity
            [Rhodopirellula baltica WH47]
          Length = 1637

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 64/244 (26%), Gaps = 34/244 (13%)

Query: 4    NICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
             +   L    L A           + + H++ +P+ AI    ++L E   E  + + +  
Sbjct: 1238 QVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDPDEGTIQEYLST 1297

Query: 56   SSMSAIIRLKFMRLAFGYTG----------------SVDSLIGLGDIEQVIEDFIAVDKR 99
               +    L+ +      +                  + + I      +  +    +   
Sbjct: 1298 IQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQDYQNTLHFD 1357

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGN 156
            V           S    +I++NL   A    P+G           D  +  +  +  +G 
Sbjct: 1358 VSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFLLLKVIDDGI 1417

Query: 157  LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 EK   + +        + +      +       L +     +     +      +
Sbjct: 1418 GI-ADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSSTEGEGSEFT 1476

Query: 211  ALLE 214
              L 
Sbjct: 1477 IRLP 1480


>gi|296418541|ref|XP_002838889.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634872|emb|CAZ83080.1| unnamed protein product [Tuber melanosporum]
          Length = 1966

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 58/247 (23%), Gaps = 32/247 (12%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +       +M+      + + H+I +P+  I   +  L +  +  E +      S S+
Sbjct: 1280 LKEAKDAAQKTMESKTRFLANMSHEIRTPLIGISGMVNFLLDTPLNGEQLDYCHTISQSS 1339

Query: 61   IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                               +  M   +    ++            +   + +   V+   
Sbjct: 1340 DGLLSVINDILDLSKVEAGMMRMNPEWFRINTLIEDANELLSAMAVAKDLELSFIVEDDV 1399

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-------IFSLKINGNL 157
                        +++LN+   A     +G   +        +         F     G  
Sbjct: 1400 PPVVCGDRVRLRQVMLNVIGNAIKFTTKGEVFSRWSVIKDAQVGEGEVMLQFECHDTGPG 1459

Query: 158  ARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--- 209
                ++           G+         +       L   +  R+  +            
Sbjct: 1460 FDRKDEELMFKPFSQIDGSSTREHGGSGLGLVISRQLVELHGGRMTAKSQKGKGSTFICS 1519

Query: 210  -SALLEK 215
                L +
Sbjct: 1520 SKFRLPR 1526


>gi|295693361|ref|YP_003601971.1| sensor protein [Lactobacillus crispatus ST1]
 gi|295031467|emb|CBL50946.1| Sensor protein [Lactobacillus crispatus ST1]
          Length = 525

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 60/237 (25%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           M   +   +            + H++ +P+  I   L LL+  G +D  +          
Sbjct: 267 MLDRMQGYIEQQK---QFVGDVSHELRTPVAVIEGHLNLLERWGKDDPQILDESIKASLQ 323

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----- 103
               ++      +   +  ++   Y   V  +  +          +  D ++Q+      
Sbjct: 324 EADRMKHLIQEMLDLTRAEQIDVQYPYEVSDVNEIIRRVVADMAMVHPDFKLQLDEDDLP 383

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              E         ++L+ L            ++ +S   +K      ++  G      ++
Sbjct: 384 DDTEIQMYHGHLEQLLVILIDNGIKYSTDRKQINVSAGVTKKNVNIIVQDFGEGISEEDQ 443

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                               + +       L       +  E ++           +
Sbjct: 444 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVASYNGTISVESVEGQGSQFKLKFPR 500


>gi|317154644|ref|YP_004122692.1| ATPase ATP-binding domain-containing protein [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316944895|gb|ADU63946.1| ATP-binding region ATPase domain protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 664

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 26/236 (11%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           +N        +L  +   S + H+I +P+ A+    E+L E  +  +  + +++   +  
Sbjct: 270 RNATLVAERANLAKSRFLSSMSHEIRTPMNAVLGMAEILGETELTPDQTRYVQIIRAAGE 329

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105
             L  +      +      + L +    + + +     +                     
Sbjct: 330 SLLAILSDIIDLSRIETGSLRLDETRFTLSETVDKAFAIIEPRAGQKSLELVCTLAPDVP 389

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFP 161
                  +   ++L++L   A      G       +    +      FS+   G      
Sbjct: 390 NRLTGDPKLLTQVLVHLLGNAVKFTEGGTVRLSVSRAPGRDGGVAVQFSVSDTGPGIPAD 449

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                       + +         +       + H    R+  E            
Sbjct: 450 RLGAIFDSFTQANNSTTREHGGAGLGLTISKRIVHMMGGRIWAESSVGLGSTFHFT 505


>gi|262190201|ref|ZP_06048478.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT
           5369-93]
 gi|262033921|gb|EEY52384.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae CT
           5369-93]
          Length = 857

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|228959428|ref|ZP_04121118.1| hypothetical protein bthur0005_29140 [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228800262|gb|EEM47189.1| hypothetical protein bthur0005_29140 [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 436

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASIDITTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESKLGEGSTFTFKLP 431


>gi|153933457|ref|YP_001383279.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152929501|gb|ABS35001.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
          Length = 342

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K ++  +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLEQKYYLDEQIRQTILLFEYEWTKKNIILDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     D + +    V  +    +  +     +      +  L K
Sbjct: 287 KNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIEISSHEAVGTEFTVKLPK 342


>gi|153811917|ref|ZP_01964585.1| hypothetical protein RUMOBE_02310 [Ruminococcus obeum ATCC 29174]
 gi|149832051|gb|EDM87136.1| hypothetical protein RUMOBE_02310 [Ruminococcus obeum ATCC 29174]
          Length = 674

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 53/221 (23%), Gaps = 27/221 (12%)

Query: 21  RICHDIISPIGAIHNSLEL----LDEVGIEDEVMQ-LIRLSSMSAIIRLKFMRLAFGYTG 75
            + HDI +P+ AI    EL    L E       ++ +         +    + LA     
Sbjct: 304 NMSHDIRTPMNAIIGYAELASRHLQETEKLGRYLEKIQICGKELLSMLGNVLDLARIENN 363

Query: 76  SVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM--- 124
            V+    +          I    +   + ++ + ++       +  +   +         
Sbjct: 364 KVEMEYTVSNVHECFENCIIMFQQQAESKNQTLSLTEQIMYPYVYMDAPHLSEVCLNIIS 423

Query: 125 ------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES---- 174
                     ++          ++     I ++  NG       +         E     
Sbjct: 424 NAIKYTNTGGAISCNVVQKSCEKEDWCNMIITITDNGIGMSEEFQKRIFEIFERERNTTL 483

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ID   I       L       +  E         +  + 
Sbjct: 484 SHIDGSGIGMGITKKLVELMDGTIEVESKQGEGSTFTVTIP 524


>gi|116872937|ref|YP_849718.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|116741815|emb|CAK20939.1| sensor histidine kinase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 479

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/235 (8%), Positives = 54/235 (22%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           + K+               + + H++ +P+  I    E L          D  + LI   
Sbjct: 239 LEKSQEEIERQEKRRRQFIADVSHEMRTPLTTISGVTEGLVNDIIPKSETDRCIALIDTE 298

Query: 57  SMSAIIR-LKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQVSWT 105
           +        + +      +  +               + +    +         V +   
Sbjct: 299 AKRLTKLVNENLDYEKIRSNKIKLQKTRFNGREFLELIKEQLDYVATEKGNTITVNIDQD 358

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++ +N+   +      G       QD K     ++   G      E   
Sbjct: 359 MNIYADYDRLTQVFINIVKNSVQFTENGQITLTGTQDYKESV-LTITDTGIGMNTEELEQ 417

Query: 163 KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    ++           I    V  L   +   +      +     +  L 
Sbjct: 418 IWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTISVTSKPNEGTTFTIRLP 472


>gi|77917671|ref|YP_355486.1| two component sensor histidine kinase [Pelobacter carbinolicus DSM
           2380]
 gi|77543754|gb|ABA87316.1| PAS/PAC sensor signal transduction histidine kinase [Pelobacter
           carbinolicus DSM 2380]
          Length = 867

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 66/220 (30%), Gaps = 19/220 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
           +     S   H++ +P+ ++    E +L + G+ ++  + + +    A +  K +     
Sbjct: 635 MKTEFISTAAHELRTPLTSVIGFSEVMLQQGGLTEQQTEFLSIIHKKAEVLGKIVEDLLD 694

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERAKI 118
                  ++        D    L              +   V      E +   R+  ++
Sbjct: 695 LARVDTGQVIRLKKDWADVNGILARSVSDYRRVCQDHRFKTVLPDAPIEMLVDDRKLFQV 754

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----ES 174
           + NL   A    P    + ++ Q + NE   ++   G   +  +               +
Sbjct: 755 MENLLSNAVKFSPVDSLIQVTCQLADNELYIAVSDQGIGMQPAQIDRMFDKFYRVDASNT 814

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    V  +   +  R+      +    ++  L 
Sbjct: 815 AREGLGLGMAIVKSIVEAHNGRIWVTSKPNRGTTVTFTLP 854


>gi|32473151|ref|NP_866145.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
 gi|32397830|emb|CAD73831.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
          Length = 1637

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 64/244 (26%), Gaps = 34/244 (13%)

Query: 4    NICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
             +   L    L A           + + H++ +P+ AI    ++L E   E  + + +  
Sbjct: 1238 QVENELREAKLAADAANEAKSHFLANMSHELRTPLSAILGFTKILQEDPDEGTIQEYLST 1297

Query: 56   SSMSAIIRLKFMRLAFGYTG----------------SVDSLIGLGDIEQVIEDFIAVDKR 99
               +    L+ +      +                  + + I      +  +    +   
Sbjct: 1298 IQRNGDYLLRLLGDVLDLSRIEANKFTTATSSVSLGELLADIFETMKMRTQDYQNTLHFD 1357

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGN 156
            V           S    +I++NL   A    P+G           D  +  +  +  +G 
Sbjct: 1358 VSEPLPRTITTDSARLRQIMINLIANAIKFTPKGRVEVVVRSEKIDDDSFLLLKVIDDGI 1417

Query: 157  LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 EK   + +        + +      +       L +     +     +      +
Sbjct: 1418 GI-ADEKLRTLFEPFVQADATISNRFGGTGLGLSITKRLTNALGGTIQVSSTEGEGSEFT 1476

Query: 211  ALLE 214
              L 
Sbjct: 1477 IRLP 1480


>gi|16331636|ref|NP_442364.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001697|dbj|BAA10434.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 417

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 66/219 (30%), Gaps = 26/219 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRL---- 69
           S I H+  +P+ AI     +L +         + + +Q    S+   +  +         
Sbjct: 191 SHIHHEFRTPLTAIIGFARMLRDELYGKLNPKQHQYVQGTLNSAEHLLSLVNDFLDLSKI 250

Query: 70  -------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-LSRERAKILLN 121
                   +      D  + +  + Q       +   + +    +      R   +IL+N
Sbjct: 251 DARCEELFYEQVAVEDLCLAVISMVQTKAKEKQLALNLTIDDGVDFCYVDQRRWKQILIN 310

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID---- 177
           L        P+G  VT++V+ +    IFS+   G     PE    +     + +      
Sbjct: 311 LLSNGVKFTPKGS-VTLAVKATDKALIFSVIDTGIGI-DPEDQRDLFQPFKQISHPPSFA 368

Query: 178 --SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       LA  +   +            SA+L 
Sbjct: 369 EKGTGLGLALSRRLAQLHGGDIQLTSTPGVGSCFSAILP 407


>gi|294619613|ref|ZP_06699041.1| two component sensor kinase [Enterococcus faecium E1679]
 gi|314939667|ref|ZP_07846892.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133a04]
 gi|314943967|ref|ZP_07850668.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133C]
 gi|314953852|ref|ZP_07856715.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133A]
 gi|314993555|ref|ZP_07858911.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133B]
 gi|314997068|ref|ZP_07862058.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133a01]
 gi|291594157|gb|EFF25603.1| two component sensor kinase [Enterococcus faecium E1679]
 gi|313588839|gb|EFR67684.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133a01]
 gi|313591992|gb|EFR70837.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133B]
 gi|313594187|gb|EFR73032.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133A]
 gi|313597391|gb|EFR76236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133C]
 gi|313641076|gb|EFS05656.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Enterococcus faecium TX0133a04]
          Length = 346

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K+    +  ++    L     S + H+  +P+  I   ++LL    + DE  Q+    
Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 170

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
            + +I +L  +         +++     + ++   D    +  V +    EK  L  +  
Sbjct: 171 VIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 230

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                         ++ LN+   A       GK+ I + ++  E +  +  +G       
Sbjct: 231 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQVNGKIHIKLFETATEIVLEVTDSGVGMNEET 290

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 291 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAIIRLSK 346


>gi|285265587|gb|ADC35361.1| histidine kinase protein [Alternaria alternata]
          Length = 1329

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 727 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 786

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 787 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 846

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155
              G  +  S    +I+LNL   A                             F++   G
Sbjct: 847 KVPGYVVGDSFRLRQIILNLVGNAIKFTELGEVKAAISMAQEQECDPDHYVFQFAVSDTG 906

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 907 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDVGKGSVFY 966

Query: 211 AL 212
             
Sbjct: 967 FT 968


>gi|322419279|ref|YP_004198502.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125666|gb|ADW13226.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 774

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 69/243 (28%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQL 52
           +A +    +  M+ V  L   I HD  + +  I+    LL     +        +++++ 
Sbjct: 378 LAIDQLRQVQKMEAVGQLAGGIAHDFNNLLTVINGYSTLLIRGLDQSSPMRKEAEQILRA 437

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              ++      L F R        +D    +  +++++E  I    R+      +   + 
Sbjct: 438 GERAADLTRQLLSFSRRQIMEPRVLDINRQVKSVQKMLERLIGEHIRLVTDLHPDAGLIK 497

Query: 113 RERAKILLNLFM---VAHASLPRGGKVT---------------ISVQDSKNENIFSLKIN 154
            +  ++   +      A  +   GG +T                    + +    S+   
Sbjct: 498 MDPGQLEQIVMNLTVNARDASDTGGVITVETANCELDAGFTHLHPGSQTGSYVRLSVTDR 557

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E    + +    +        +    V  +  +    +            +  
Sbjct: 558 GQGM-TEEVKQHLFEPFFTTKEMGRGTGLGLATVYGIVKQCCGYIQVISEPGQGARFNIY 616

Query: 213 LEK 215
           L +
Sbjct: 617 LPR 619


>gi|240168528|ref|ZP_04747187.1| hypothetical protein MkanA1_04397 [Mycobacterium kansasii ATCC
           12478]
          Length = 477

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 55/216 (25%), Gaps = 19/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
              +   H++ +P+ AI    EL     D+       M  +   +      ++ + L   
Sbjct: 251 QFVADASHELRTPLAAIRGYTELAQRMSDDREAVAHAMSRVASETERITRLVEDLLLLAR 310

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---------ERAKILLNLF 123
                       D+  +  D ++           E                  +++ NL 
Sbjct: 311 LDSGRPLEREPVDLSHLAVDAVSDAHIAGPDHKWELDLPPEPVVVTGDVARLHQVVTNLL 370

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDS-- 178
             A      G  VT  +       +  +  NG         E F +   G+   +     
Sbjct: 371 ANARIHTGPGTVVTTRLSVEPAHALLQVVDNGPGIPVGLQSEVFERFARGDTSRSRKGGS 430

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   +   +       H    +  L 
Sbjct: 431 TGLGLAIVSAVVKAHNGTITVNSSPGH-TEFAVRLP 465


>gi|170767706|ref|ZP_02902159.1| phosphate regulon sensor protein PhoR [Escherichia albertii
           TW07627]
 gi|170123194|gb|EDS92125.1| phosphate regulon sensor protein PhoR [Escherichia albertii
           TW07627]
          Length = 431

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++ E  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMHEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQHKQTFTFEIDNNLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVCWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S +L 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTLGKGARFSFVLP 422


>gi|160884987|ref|ZP_02065990.1| hypothetical protein BACOVA_02983 [Bacteroides ovatus ATCC 8483]
 gi|156109337|gb|EDO11082.1| hypothetical protein BACOVA_02983 [Bacteroides ovatus ATCC 8483]
          Length = 482

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 70/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL LL++     + DE  QL R 
Sbjct: 247 LLKNITEFKELDSAK--TTFISTISHELKTPIAAIMMSLNLLEDKRVGALNDEQEQLSRS 304

Query: 56  SSMSAIIRLKF----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              ++   L      + +     G +  +  +    ++IE  I  ++     +  +    
Sbjct: 305 IKENSERLLSITGELLNMTQVEAGKLQLMPKITKPIELIEYAIKANQVQADKFNIQIEVE 364

Query: 112 SRERA------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             E               +L NL   A       G+V I  +   N     ++  G    
Sbjct: 365 YPEEKIGKLFVDSEKIAWVLTNLLSNAIRYSKENGRVIIGARQDGNIIELYVQDFGKGID 424

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  E            L+
Sbjct: 425 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLTVESELGKGSRFVMRLK 481


>gi|144897506|emb|CAM74370.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 496

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 20/228 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS------ 57
           N+      ++  A + S   HD+  P+ +I +  +LL          +            
Sbjct: 262 NLAAANRELERFAFVAS---HDLQEPLRSIVSFAQLLSRQYAGQLDQRADEYIGFIVSGG 318

Query: 58  MSAIIRLKFMRLAFGYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 +  +       G +               +E + E   + D  +QV+     + 
Sbjct: 319 QRMHALINDLLTYTRVDGQMAEFTTFSSAESCAQAMENLDEAIKSSDAHIQVAALPVIVG 378

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLAR--FPEKFTQ 166
              +  ++  NL   A    P G +  I+V          F++  NG       P+ F  
Sbjct: 379 DPIQVMQLFQNLLANAIKFQPPGQQPVITVGACQEGAMWRFTITDNGIGMDLSGPDPFEI 438

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +         I       +   +   +  E   +        L 
Sbjct: 439 FRRQHPAHKYPGTGIGLAICKRIVERHGGTIWIESPAEAGTRFHFTLP 486


>gi|158523275|ref|YP_001531145.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
 gi|158512101|gb|ABW69068.1| PAS/PAC sensor hybrid histidine kinase [Desulfococcus oleovorans
           Hxd3]
          Length = 1106

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
                    M+ V  L   + HD  + +  I    EL  +             E+    R
Sbjct: 726 SAQLMQAQKMESVGRLAGGVAHDFNNMLNVILGHAELALDQVGPDDPLREDLTEIFDAAR 785

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKIDL 111
            S+      L F R       +V     +  + +++   I  D  +     S        
Sbjct: 786 RSAEITKQLLAFARRQIIVPRTVYLNDTVEKMLKMLRRLIGEDIDLAWKPGSGLWPVYAD 845

Query: 112 SRERAKILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKINGN 156
           + +  +IL NL + A  ++   G                   +   S    + S+  +G 
Sbjct: 846 AAQIDQILANLCLNARDAIDGTGRITIETQNTALDEAYCAGHAEFVSGEYVVLSVSDDGR 905

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + +    +    +   +    V  +  +N   +       H       L 
Sbjct: 906 GMDKV-TMDNLFEPFFTTKNVNEGTGLGLATVYGIVRQNNGFINVYSEPGHGATFRIYLP 964

Query: 215 K 215
           +
Sbjct: 965 R 965


>gi|116514433|ref|YP_813339.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116093748|gb|ABJ58901.1| Signal transduction histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 530

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 60/236 (25%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           M   +   +          S + H++ +P+  I   L +L   G +D  +          
Sbjct: 268 MLDRMQKYIEQQK---QFVSDVSHELRTPVAVIEGHLSMLKRWGKDDPQVLEESIDASIS 324

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVS 103
             + ++      +   +  +++  Y  ++   + +          +  D ++      + 
Sbjct: 325 EAERMKHLIQEMLDLTRAEQISVHYPNAIAEPMEVLTRVVGDIGMVHPDFKISLEVEDLD 384

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +         +IL+ L            ++ ++   S  E    ++  G      +K
Sbjct: 385 PDTKIQIYQGHLEQILIILIDNGIKYSTDRKEIAVAAGQSGQEMQIVVQDYGEGISDEDK 444

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               + +       L       +  E +            
Sbjct: 445 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVESYHGTIDVESVLGQGSQFRITFP 500


>gi|104774338|ref|YP_619318.1| two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|103423419|emb|CAI98292.1| Two-component system, sensor histidine kinase [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC 11842]
 gi|325126133|gb|ADY85463.1| Two-component sensor histidine kinase [Lactobacillus delbrueckii
           subsp. bulgaricus 2038]
          Length = 530

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 60/236 (25%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           M   +   +          S + H++ +P+  I   L +L   G +D  +          
Sbjct: 268 MLDRMQKYIEQQK---QFVSDVSHELRTPVAVIEGHLSMLKRWGKDDPQVLEESIDASIS 324

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVS 103
             + ++      +   +  +++  Y  ++   + +          +  D ++      + 
Sbjct: 325 EAERMKHLIQEMLDLTRAEQISVHYPNAIAEPMEVLTRVVGDIGMVHPDFKISLEVEDLD 384

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +         +IL+ L            ++ ++   S  E    ++  G      +K
Sbjct: 385 PDTKIQIYQGHLEQILIILIDNGIKYSTDRKEIAVAAGQSGQEMQIVVQDYGEGISDEDK 444

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               + +       L       +  E +            
Sbjct: 445 KKIFNRFYRVDKARTREKGGNGLGLSIAQKLVESYHGTIDVESVLGQGSQFRITFP 500


>gi|94987320|ref|YP_595253.1| Signal transduction histidine kinase [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731569|emb|CAJ54932.1| Signal transduction histidine kinase [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 480

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 73/232 (31%), Gaps = 19/232 (8%)

Query: 1   MAKNICFNL---SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLI 53
           M KN    +    +  L ++  + + I H+I +P+G I +S ELL      I  +  Q++
Sbjct: 247 MTKNHRLEMELHQNEKLASMGRITASIAHEIRNPLGIIRSSAELLLRRAVDINPDNKQIL 306

Query: 54  RLSSMSAIIRLKFMRLAFGYTGS-------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                 +    + +     Y          ++    L  +   ++               
Sbjct: 307 TAIYDESCRLSQTVNDFLDYARPKIPKQELLNLNSVLEQVLGFLQGEATKRHITISKDIS 366

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK----INGNLARFPE 162
            ++ L  + + +   L+ +   +     K      + +      ++     +G      +
Sbjct: 367 SELQLYGDTSLLYRALYNILINAFQSINKDGFIHINGEKNKDGFIELTFKDSGAG-FPQD 425

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +      +  +   +       +   +  +L+ +   +   ++  LL 
Sbjct: 426 QIQHVTSPFYTTKDNGTGLGLPIANSIIQSHHGKLILKNDSNGGALIQILLP 477


>gi|152159|gb|AAA26249.1| dctB protein [Sinorhizobium meliloti]
          Length = 616

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48
           +       + +  L     + + + H+I  P+  I    +                  + 
Sbjct: 385 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMES 444

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           + +L            +F R      G       +     +    F      +++    +
Sbjct: 445 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLPPD 504

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
            +          ++L+NL   A  ++       I V+  +       ++  NG      +
Sbjct: 505 GLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGI-AAD 563

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++      S  D   +       +  +    +  E         +  L+K
Sbjct: 564 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFAVNLKK 615


>gi|320102584|ref|YP_004178175.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319749866|gb|ADV61626.1| PAS/PAC sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 1293

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/260 (8%), Positives = 60/260 (23%), Gaps = 48/260 (18%)

Query: 1   MAKNICFNLSSMDLV-------------ALLCSRICHDIISPIGAIHNSLELLDEVGIED 47
           + +     ++ ++L              ++  + + H+I +P+ A+    ELL +  +  
Sbjct: 705 LRQRQSQQMAEVELRVAKLQAEEANRAKSVFLATMSHEIRTPMNAVVGMTELLLDTPLTP 764

Query: 48  EVMQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIE 91
           E  +       S                       +         V          +   
Sbjct: 765 EQREFTETIRASGNQLLGLINDILDLSKIESGRVELEEGPVRLRLVIERCLELVAARAHA 824

Query: 92  DFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK------- 144
             + +  R+  +             +IL NL   A      G  V  +   +        
Sbjct: 825 KGLELAARLDGTLPEVIRGDDLRLRQILTNLLSNAVKYTDTGEVVLTASWHAGDLSAPLD 884

Query: 145 -----NENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHEN 193
                     +++ +G      +K  ++                   +       L  + 
Sbjct: 885 SPKRSPRLEIAVEDSGIGIPDAQKP-RLFQAFQQLDAAGHRRTGGTGLGLAITRKLVEKM 943

Query: 194 KIRLLPEIIDDHNVVLSALL 213
              +  E            +
Sbjct: 944 GGTIHVENRPGGGSRFVFNI 963


>gi|302187056|ref|ZP_07263729.1| sensory box sensor histidine kinase/response regulator [Pseudomonas
           syringae pv. syringae 642]
          Length = 697

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 77/246 (31%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +++       S  + A+  L   I HD  + +  I  SLELL     +    +L R    
Sbjct: 308 LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGA 367

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     V+V  +   
Sbjct: 368 AQDASKRAASLTHRLLAFSRRQTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGL 427

Query: 109 IDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSL 151
                +  ++    LNL + A  ++PRGG++TI   +                      +
Sbjct: 428 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRELIPGQYLSLCV 487

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 488 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 546

Query: 210 SALLEK 215
              L +
Sbjct: 547 CLYLPR 552


>gi|229917736|ref|YP_002886382.1| histidine kinase [Exiguobacterium sp. AT1b]
 gi|229469165|gb|ACQ70937.1| histidine kinase [Exiguobacterium sp. AT1b]
          Length = 459

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 68/213 (31%), Gaps = 19/213 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLAFGYT 74
           S + H++ +P+ +I    E +     +        + +I   +   I  ++ +       
Sbjct: 241 SSVSHELRTPLTSIKGWTETIRGGDEKLSEETELGLSIIHSETERMIGLVEQLLDYTKIE 300

Query: 75  GSVDSLI-------GLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKILLNLF 123
            S   L         L     +       DK + +     +            ++ LN+ 
Sbjct: 301 ESRLVLYRQELDLVSLLRQVTLQLKQSLEDKGITLIERYPQKSVGLFDENRLKQVFLNIL 360

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDI 181
             A    P GG +TI    S+     S+   G      E   +I +   ++ +   S  +
Sbjct: 361 ENAIRFSPDGGTLTIRFVQSERVAFISIIDEGPGI-SREHLQRITEMFYQAHVTEGSSGL 419

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  L   ++ +L+ E    H   ++ LL 
Sbjct: 420 GLAISKELIEAHEGKLVIESEVGHGTTVTVLLP 452


>gi|171912397|ref|ZP_02927867.1| two-component hybrid histidine kinase [Verrucomicrobium spinosum
           DSM 4136]
          Length = 956

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 66/242 (27%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45
           +       + S  + AL  L   I H+I +P+    ++L +LD                +
Sbjct: 692 LRAAERDLIQSEKMAALGILTGGIMHEINNPLNFARSALFILDRRTGKLPEESKGTLKEV 751

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             ++ + I   S        F         +      +    +++   +           
Sbjct: 752 VSDIREGINRISTIISDLRTFCHPETVMAAACPVSEPIQSAIRILSSPLKEFHIQLHEDV 811

Query: 106 GEKIDLSRERAKILLNLF---MVAHASLPRGG-------KVTISVQDSKNENIFSLKING 155
              I +  +R ++ L L      A  +L           ++ IS           ++ NG
Sbjct: 812 PADIVVRGDRNQLTLVLLNLLKNAIDALASSMTPDSAPPQIWISASSEGTATDILIRDNG 871

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I D    +    +   +       +   +   +  +       V +  +
Sbjct: 872 PGIPATNLS-RIFDPFFTTKPAGEGTGLGLSVCYRIITAHGGNISADAAPGGGTVFTIRM 930

Query: 214 EK 215
            +
Sbjct: 931 PR 932



 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 66/246 (26%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------------VGIEDE 48
           + +     +    L     S I H++ +P+  +   L+ L                    
Sbjct: 216 LEQKNLQLVEMDRLKTDFFSNITHELRTPLTLMIAPLQRLQRLYPAGSPQSGNGGAPSSM 275

Query: 49  VMQLIRLSSMSAIIR---------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93
           +   +     +A+                  +       ++  + +   L  +  +    
Sbjct: 276 LHDELTGIYQNALRLLKLINDLLDLASANVGRMRISHQRFSLRLFTGRLLQSVTNMAHQG 335

Query: 94  IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKI 153
                +              +  KILLNL   A    P+GG VT+      +  +F +  
Sbjct: 336 DVAVHQQMPEHLEMVDSDQEKLEKILLNLLFNAVKFTPKGGSVTLITNTVNDFLVFEVID 395

Query: 154 NGNLARF---PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G        P  F +    +  V        +    V  LA     R+  E I      
Sbjct: 396 TGIGISQQNLPFIFDRFWQADSSVTRRHPGTGLGLALVKELATRMGGRVEAESIQGAGTT 455

Query: 209 LSALLE 214
           +  L+ 
Sbjct: 456 MRVLIP 461


>gi|195941584|ref|ZP_03086966.1| sensory transduction histidine kinase, putative [Borrelia
           burgdorferi 80a]
 gi|221217923|ref|ZP_03589390.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 72a]
 gi|223889402|ref|ZP_03623988.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 64b]
 gi|224532630|ref|ZP_03673252.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi WI91-23]
 gi|224533349|ref|ZP_03673943.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi CA-11.2a]
 gi|225548913|ref|ZP_03769890.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 94a]
 gi|225549981|ref|ZP_03770942.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 118a]
 gi|226320733|ref|ZP_03796290.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 29805]
 gi|226321463|ref|ZP_03796990.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi Bol26]
 gi|221192229|gb|EEE18449.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 72a]
 gi|223885088|gb|EEF56192.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 64b]
 gi|224512486|gb|EEF82865.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi WI91-23]
 gi|224513514|gb|EEF83871.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi CA-11.2a]
 gi|225369440|gb|EEG98892.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 118a]
 gi|225370516|gb|EEG99952.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 94a]
 gi|226233259|gb|EEH32011.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi Bol26]
 gi|226233845|gb|EEH32569.1| putative sensory transduction histidine kinase [Borrelia
           burgdorferi 29805]
 gi|312148036|gb|ADQ30695.1| sensory transduction histidine kinase, putative [Borrelia
           burgdorferi JD1]
          Length = 382

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 74/227 (32%), Gaps = 20/227 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAII 62
            + ++         I H+I +P+GAI  +L+LL +   + ++         ++       
Sbjct: 146 RVEALASFTRHARNIAHEIKNPLGAIDINLQLLKKEIEKQKMKNGKAENYFKVIKEEINR 205

Query: 63  RLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             K +         +   +   D         E +         ++ ++       L  E
Sbjct: 206 VDKIVTEFLLTVRPIKINLQEKDIKQVIGSVCELLNPGLENKHIKLLLNLNKISNILIDE 265

Query: 115 R--AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +   ++++N+   A  +L        K+ I + +  N+   ++K NGN  +      +I 
Sbjct: 266 KLLKQVIINIVKNAEEALLETKKEIKKIEIFLFEKDNKIHINIKDNGNGIKDG-VKEEIF 324

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +      I       +  E    +  E  +    + +  L K
Sbjct: 325 KPQFSTKEKGSGIGLTISYKIIKELGGEIFVESKEGKGTIFTITLPK 371


>gi|153010009|ref|YP_001371224.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
 gi|151561897|gb|ABS15395.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum anthropi ATCC 49188]
          Length = 614

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 68/241 (28%), Gaps = 31/241 (12%)

Query: 4   NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSM 58
            +   L S  +    L + + H++ +P+ +I    ++L          ++  +   L   
Sbjct: 317 TLKAELESERIGKGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLANEKQREYAGLIHQ 376

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
           S    L+ +      +        +        D   +   V +    +K      R   
Sbjct: 377 SGHYLLELVNAVLDNSRLETGNYSIDPQNFAFRDAAEMCTSVMLPQAEKKGVAFCHRVGA 436

Query: 116 ------------AKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
                        +ILLNL   A      GG VTI     +   +     S+   G    
Sbjct: 437 GIGELVADRRAIQQILLNLASNAVKFTQSGGCVTIDATRVMASGRAMLEISVSDTGIGI- 495

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE   +I               +   +    V  L   ++  +  +       +++  L
Sbjct: 496 EPEDMQRIGTPFVRADNNYTRAQEGSGLGLSVVKGLVELHQGSMQLKSCPGEGTIVTIRL 555

Query: 214 E 214
            
Sbjct: 556 P 556


>gi|254285757|ref|ZP_04960720.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226]
 gi|150424254|gb|EDN16192.1| sensor histidine kinase LuxQ [Vibrio cholerae AM-19226]
          Length = 857

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|15595109|ref|NP_212898.1| sensory transduction histidine kinase, putative [Borrelia
           burgdorferi B31]
 gi|2688706|gb|AAC67115.1| sensory transduction histidine kinase, putative [Borrelia
           burgdorferi B31]
          Length = 382

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 74/227 (32%), Gaps = 20/227 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAII 62
            + ++         I H+I +P+GAI  +L+LL +   + ++         ++       
Sbjct: 146 RVEALASFTRHARNIAHEIKNPLGAIDINLQLLKKEIEKQKMKNGKAENYFKVIKEEINR 205

Query: 63  RLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             K +         +   +   D         E +         ++ ++       L  E
Sbjct: 206 VDKIVTEFLLTVRPIKINLQEKDIKQVIGSVCELLNPGLENKHIKLLLNLNKISNILIDE 265

Query: 115 R--AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +   ++++N+   A  +L        K+ I + +  N+   ++K NGN  +      +I 
Sbjct: 266 KLLKQVIINIVKNAEEALLETKKEIKKIEIFLFEKDNKIHINIKDNGNGIKDG-VKEEIF 324

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +      I       +  E    +  E  +    + +  L K
Sbjct: 325 KPQFSTKEKGSGIGLTISYKIIKELGGEIFVESKEGKGTIFTITLPK 371


>gi|329956790|ref|ZP_08297359.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
 gi|328523829|gb|EGF50916.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides clarus YIT 12056]
          Length = 479

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 21/216 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR------------- 63
           S I H++ +PI AI  SL+LL++     + +E  QL +    +A                
Sbjct: 263 STISHELKTPISAILMSLQLLEDNRVGALNEEQEQLSKSIRENADRLLGITGELLNMTQV 322

Query: 64  -LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKILL 120
               +++    T  ++ +       QV  D   +   V+            S + A +L 
Sbjct: 323 EAGKLQMIPKITKPIELIEYAIKANQVQADKFNIQIEVEYPEEKMPKLFVDSEKIAWVLT 382

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN--VESTIDS 178
           NL   A       G+V I  +   N     ++  G         +          + +  
Sbjct: 383 NLLSNAIRYSKENGRVVIGAKQEDNFVELYVQDFGKGIDPRYHQSIFDRYFRVPGTKVQG 442

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +           +   L               L+
Sbjct: 443 SGLGLSISKDFVEAHGGTLTVRSELGKGSRFVIRLK 478


>gi|320160300|ref|YP_004173524.1| two-component hybrid sensor and regulator [Anaerolinea thermophila
           UNI-1]
 gi|319994153|dbj|BAJ62924.1| two-component hybrid sensor and regulator [Anaerolinea thermophila
           UNI-1]
          Length = 1087

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 58/238 (24%), Gaps = 29/238 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEV-------MQLI 53
           A+N     + +     L + + H++ +P+  I    +  L+               +Q+I
Sbjct: 469 AQNTAERANQLK--TRLLANVGHEMRTPLNVILGYAQSALNRHKRSGHHDTELERDLQII 526

Query: 54  RLSSMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             S    +  +  +                +     +             ++     +  
Sbjct: 527 SQSGEHLLRMINDLLDLSRAEIGALNMYFEWMDPRPIILEAFETFARSEEQNPFIRWRVE 586

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                      S    +ILLNL   A       G++ +S          S+   G     
Sbjct: 587 IPERLPIIQADSARLKQILLNLLSNARKFT-HEGEIVLSAHVEPPFLRLSVADTGEGISL 645

Query: 161 PEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E+  ++ +               +       L   +   L  E            L 
Sbjct: 646 -EQQERLFEPFSASMGKRRPSGIGLGLSITRHLIALHGGTLTLESQPGKGSTFYIYLP 702


>gi|317478664|ref|ZP_07937819.1| hsp90-like protein [Bacteroides sp. 4_1_36]
 gi|316905175|gb|EFV26974.1| hsp90-like protein [Bacteroides sp. 4_1_36]
          Length = 479

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 69/237 (29%), Gaps = 25/237 (10%)

Query: 1   MAKNICF--NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRL 55
           + KNI     L S        S I H++ +PI AI  SL+LL++     + DE  QL   
Sbjct: 244 LLKNITEFKELDSAK--TTFISTISHELKTPISAILMSLQLLEDKRVGVLNDEQEQLSNS 301

Query: 56  SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              +A                    +++    T  ++ +       QV  D   +   V+
Sbjct: 302 IKENADRLLGITGELLNMTQVEAGKLQMMPKITKPIELIEYAIKANQVQADKFGIQIEVE 361

Query: 102 VSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                       S + A +L NL   A       G+V I  +   +     ++  G    
Sbjct: 362 YPEEKMPKLFVDSEKIAWVLTNLLSNAIRYSKENGRVVIGARHDGDFVEMYVQDFGKGID 421

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +          + +    +           +   L  +            L+
Sbjct: 422 PRYHQSIFDRYFRVPGTKVQGSGLGLSISKDFVEAHGGTLAVQSELGKGSRFVIRLK 478


>gi|313500183|gb|ADR61549.1| GacS [Pseudomonas putida BIRD-1]
          Length = 917

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 274 MARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKSA 331

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      +    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++     +   +   S++  G     
Sbjct: 392 PASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSP 451

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +  T     +              +       L  +    +  +           S  L
Sbjct: 452 QDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNL 511

Query: 214 EK 215
            K
Sbjct: 512 PK 513


>gi|239831458|ref|ZP_04679787.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
 gi|239823725|gb|EEQ95293.1| PAS domain S-box-containing protein [Ochrobactrum intermedium LMG
           3301]
          Length = 783

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 65/237 (27%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSS 57
            K      +     +   + + H++ +P+ AI    E++          D   + I    
Sbjct: 534 EKERAEAANRAK--SEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIH 591

Query: 58  MSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S    L  +      +                   +     +  +  D   +    ++ 
Sbjct: 592 TSGNFLLNVINDILDMSKIEAGHFSLDREEIDLCPLINETVRMISLQADEKNIAVNTRIE 651

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +     R   ++L+NL   A      GG++T+  + + +    +++  G        
Sbjct: 652 DAMQLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSALFMTIQDTGVGIPKSAI 711

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I             T     +       LA  +   L     +    V+S  + 
Sbjct: 712 K-KIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCIP 767


>gi|229590484|ref|YP_002872603.1| putative two-component sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
 gi|229362350|emb|CAY49252.1| putative two-component sensor histidine kinase [Pseudomonas
           fluorescens SBW25]
          Length = 556

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 63/247 (25%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----- 53
           +  N      S  + A+  L   I HD  + +  I  SLELL       ++  L      
Sbjct: 170 LRSNEEALRQSQKMEAVGQLTGGIAHDFNNMLTGIIGSLELLRRRVSRGKLDDLDSLIDL 229

Query: 54  -----RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R     +  V     +  + ++++  I     + +    + 
Sbjct: 230 GVTSANRAAGLTHRLLAFSRRQSLDSKPVGINQLVFSMGELLQRSINESITLDMRLDDQL 289

Query: 109 IDLSRERAKILLNLFMVAH------------------ASLPRGGKVTISVQDSKNENIFS 150
                +  ++   L  +                      L              +    S
Sbjct: 290 WTAEADPNQLESALLNLVINARDAMPGGGKLTVETANRHLDNVFTAAYGTLKPGDYVELS 349

Query: 151 LKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +  NG          ++ D    +        +    +   A ++   +           
Sbjct: 350 VSDNGCGIPES-VMGRVFDPFFTTKPIGQGTGLGLSMIYGFARQSHGHVTIHSEVGKGTT 408

Query: 209 LSALLEK 215
           +S  L +
Sbjct: 409 VSLFLPR 415


>gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
 gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine
           kinase [Chitinophaga pinensis DSM 2588]
          Length = 1010

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 63/236 (26%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
                  +          S I H+  +P+  +   LE L    +  +  +    +  +  
Sbjct: 339 RAEALLEIDRAKTA--FFSNISHEFRTPLTLMLGPLEELLSQQDGVLTKQQEANVTATHR 396

Query: 59  SAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-QVS 103
           +A+                   +R  +      D    +    +   +   ++  V    
Sbjct: 397 NAMRLLRLVNTLLDFSRIEADKVRAQYFPVNLSDVTTDIASTFRAAVEHAGLEFNVTCKD 456

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +           K++LNL   A     +G    + +++S    I  ++  G      E 
Sbjct: 457 LSMAAYVDRDMWEKVILNLLSNAFKYTLQGSIS-VILEESDQHAILLVRDTGVGIPVSEL 515

Query: 164 ---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +          + +   I    V  L   +   +  E  +      +  + 
Sbjct: 516 PNMFERFHRVKQSKGRSFEGTGIGLSLVRELVQLHNGDISVESEEGKGSTFAVKIP 571



 Score = 82.9 bits (203), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 60/241 (24%), Gaps = 31/241 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
               +    S ++  A + S   HD+  P+  I    ELL +        +     I+ S+
Sbjct: 772  TSELLRKNSELEQFAYIAS---HDLQEPLRKIRTFSELLQKSLQKGNPVNNYFDKIQSSA 828

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSWTGEKID 110
                  +K +      + + +  + +     + +               ++ +       
Sbjct: 829  ERMTQLIKDVLDYSRLSNTEEKFVPIDLNTILQQVKGDFDLLIEQKQATIKSNTLPVVKG 888

Query: 111  LSRERAKILLNLFMVAHASLPRGG--------------KVTISVQDSKNENIFSLKINGN 156
            +  +  ++  NL   +                           +Q+  +        NG 
Sbjct: 889  IPLQLQQLFTNLIGNSLKFCENQPLISIFASPLPAPEIPFYPGLQEDISYVKLEFSDNGI 948

Query: 157  LARFP--EKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                   E+   I     E        I       +   +   +      +     + +L
Sbjct: 949  GFEQQFAERIFAIFQRLNERKVYAGTGIGLALCKKIVENHHGIIRANGKLNEGATFTVIL 1008

Query: 214  E 214
             
Sbjct: 1009 P 1009


>gi|146284300|ref|YP_001174453.1| hypothetical protein PST_3988 [Pseudomonas stutzeri A1501]
 gi|145572505|gb|ABP81611.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
          Length = 797

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 55/236 (23%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           M       +  M       S + H++ +P+ +I  +L L+             +++++  
Sbjct: 427 MDLTERKRIEQMK--NDFVSTVSHELRTPLTSISGALGLIVGGALGKAPPSMQQMLEIAY 484

Query: 55  LSSMSAIIRLKFMRLAF-----------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +S+     +  +                     + L       Q + D   V   ++ +
Sbjct: 485 SNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHA 544

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L N    A    P GG + +           S+   G       +
Sbjct: 545 TDVRVWVDGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLRGQRVRISVTDQGPGIPEAFR 604

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +       L       +  +            L 
Sbjct: 605 SRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELP 660


>gi|118590259|ref|ZP_01547662.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
 gi|118437231|gb|EAV43869.1| periplasmic sensor signal transduction histidine kinase [Stappia
           aggregata IAM 12614]
          Length = 518

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 69/241 (28%), Gaps = 26/241 (10%)

Query: 1   MAKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------- 49
           M+        + +L  +   + + H++ +P+ AI    E++ +  +              
Sbjct: 248 MSDEARRRAEAANLAKSRFLATMSHELRTPLNAILGFSEIMKDEVLGKMHNKNYQSYAED 307

Query: 50  --------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                   + LI      + I      L        D +   G + +V      +     
Sbjct: 308 IHGSGQHLLNLINEILDLSRIEAGRHELHEEPIFLDDIVEECGTMMKVRAKAKTISLHHT 367

Query: 102 VSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLAR 159
                 ++        +++LNL   A    P  G+V I V   S      S+K  G    
Sbjct: 368 HEPDLPRVWADERALRQVVLNLLSNAVKFTPVNGEVWIKVGPTSDGGQYVSIKDTGPGIP 427

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E  T +          ++      +    V  L + +  +   +        +   L 
Sbjct: 428 EDEIPTVLEAFGQGSHAIKTAEPGTGLGLSIVQALVNMHDGKFSLKSKPGEGTEVIVTLP 487

Query: 215 K 215
           +
Sbjct: 488 R 488


>gi|94970045|ref|YP_592093.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
 gi|94552095|gb|ABF42019.1| PAS/PAC sensor hybrid histidine kinase [Candidatus Koribacter
           versatilis Ellin345]
          Length = 522

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/245 (9%), Positives = 71/245 (28%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
            +N+   +  +  + A+  L   + HD  + +  I +  EL+ +   + + ++       
Sbjct: 128 RRNLDEQIRNASKMEAIGRLAGGVAHDFNNLLMVITSYTELMLDSMADFDPLRKKAQEVL 187

Query: 58  -------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L F R         D  I L ++ +++   +  +  V++        
Sbjct: 188 KASARAASLTRQLLAFSRKQVLDPQFQDFNILLREMSKLLGRVLGENVEVKLDLRENLGS 247

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV------------------QDSKNENIFSLK 152
           +  +R +I   +  +A  +     +                              + S++
Sbjct: 248 VYADRGQIEQIMMHLAVNARDVMPEGGRFTVRTANVDFDGSYSRLPGSPPPGEFVMMSVE 307

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             GN     +  + + +    +        +    V  +  ++   +  +  + H     
Sbjct: 308 DTGNGM-SRDVLSHLFEPFFSTKAMGKGTGLGLAAVYGIVKQSGGFIWVDSEEGHGSRFK 366

Query: 211 ALLEK 215
               +
Sbjct: 367 MYFPR 371


>gi|75908887|ref|YP_323183.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75702612|gb|ABA22288.1| PAS/PAC sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 708

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 63/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+ AI    +LL E  +E         +          +         +  
Sbjct: 341 AVLSHELRTPLNAILGWSKLLQERKLEPARTFQALATIERNATLQVQLIEDLLDISRILQ 400

Query: 80  LIGLGDIEQVI-----------EDFIAVDKRVQVSWTGEKIDLSR-----ERAKILLNLF 123
              + +I +V                A  K +QVS                  +++ NL 
Sbjct: 401 GKLVINITKVNLVIVILTALETMRLAAESKLIQVSTNFPSKMGQVMGDSARLQQVVWNLL 460

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGNVESTIDS 178
             A    P+GGK+ +S++         +   G   +         + +  D +       
Sbjct: 461 SNAVKFTPKGGKIEVSLEKVDGYAQIVVSDTGKGIKPEFLPYVFDYFRQADSSSTRRFGG 520

Query: 179 HDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
             +    V  +   +   +  +   ++     +  L 
Sbjct: 521 LGLGLAIVRKIVEIHGGTVTAQSLGEEQGASFTVRLP 557


>gi|21674870|ref|NP_662935.1| sensory box histidine kinase/response regulator [Chlorobium tepidum
           TLS]
 gi|21648093|gb|AAM73277.1| sensory box histidine kinase/response regulator [Chlorobium tepidum
           TLS]
          Length = 675

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 62/241 (25%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           ++       ++ +  L   I HD  + +  I    E+    +DE     E    I  ++ 
Sbjct: 287 ESQLSKSQRLETIGTLAGGIAHDFNNILTPILGYAEMGLSSIDEDDPIHEYFAEIMQAAE 346

Query: 59  SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A   +     F +   G T  V     + ++ +++   +     ++         +  +
Sbjct: 347 RAQKLVSQILTFSKAEEGKTAPVSIQEVIDEVIRLMRPSLPSSVSIEEDIDSSCHKVIAD 406

Query: 115 ---RAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKING 155
                ++++NL   A  ++ +                            N     +   G
Sbjct: 407 PAQMHQVVVNLCTNALHAMEQTGGVLKIVLREVSTGNGMPPIAPELPDGNYAELIISDTG 466

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I +    +        +    V  +       +  E            L
Sbjct: 467 TGMDSRAI-ERIFEPFFTTKSVEKGSGLGLSVVHGIVTGANGHISVESTQGKGSAFHVWL 525

Query: 214 E 214
            
Sbjct: 526 P 526


>gi|17228884|ref|NP_485432.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17130736|dbj|BAB73346.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 811

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 51/248 (20%), Gaps = 39/248 (15%)

Query: 5   ICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
               L      A L         + + H++ +P+  I    ++L       E  Q     
Sbjct: 323 EQAQLKKSKEAADLANHAKSEFLANMSHELRTPLNGILGCAQILQRSSTLPEQEQHHINI 382

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------- 103
                  L  +         +++       E V                           
Sbjct: 383 IEQCGSHLLTLINDILDLAKIEAKKLELHGEDVHFPSFIQGIAEICQIRAAQKDILFVYE 442

Query: 104 ----WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSL 151
                       ++   ++LLNL   A      G          +        +   + +
Sbjct: 443 PASNLPIWLHIDAKRLRQVLLNLLGNAIKFTDHGQVKLKVETIEESSTQKPVKHRIRYCI 502

Query: 152 KINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +  G      E   +I     +        +   +       L       +       H 
Sbjct: 503 EDTGIGITDAELS-KIFLPFEQVGEKKRQTEGTGLGLAITRQLVQMMGSDIHVTSQVGHG 561

Query: 207 VVLSALLE 214
                 LE
Sbjct: 562 STFWFELE 569


>gi|15601492|ref|NP_233123.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121585608|ref|ZP_01675404.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           2740-80]
 gi|153819423|ref|ZP_01972090.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457]
 gi|153820666|ref|ZP_01973333.1| sensor histidine kinase LuxQ [Vibrio cholerae B33]
 gi|227812303|ref|YP_002812313.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2]
 gi|229506107|ref|ZP_04395616.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX
           330286]
 gi|229510036|ref|ZP_04399516.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33]
 gi|229516403|ref|ZP_04405850.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9]
 gi|229605638|ref|YP_002876342.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MJ-1236]
 gi|254849896|ref|ZP_05239246.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10]
 gi|262152398|ref|ZP_06028531.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE
           91/1]
 gi|298499532|ref|ZP_07009338.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757]
 gi|50401170|sp|Q9KLK7|LUXQ_VIBCH RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|9658157|gb|AAF96635.1| sensor histidine kinase LuxQ [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121550225|gb|EAX60239.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           2740-80]
 gi|126510031|gb|EAZ72625.1| sensor histidine kinase LuxQ [Vibrio cholerae NCTC 8457]
 gi|126521709|gb|EAZ78932.1| sensor histidine kinase LuxQ [Vibrio cholerae B33]
 gi|227011445|gb|ACP07656.1| sensor histidine kinase LuxQ [Vibrio cholerae M66-2]
 gi|229346284|gb|EEO11255.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae RC9]
 gi|229352481|gb|EEO17421.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae B33]
 gi|229356458|gb|EEO21376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae BX
           330286]
 gi|229372124|gb|ACQ62546.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MJ-1236]
 gi|254845601|gb|EET24015.1| sensor histidine kinase LuxQ [Vibrio cholerae MO10]
 gi|262030849|gb|EEY49480.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae INDRE
           91/1]
 gi|297541513|gb|EFH77564.1| sensor histidine kinase LuxQ [Vibrio cholerae MAK 757]
          Length = 857

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|323191317|gb|EFZ76580.1| phosphate regulon sensor kinase PhoR [Escherichia coli RN587/1]
          Length = 431

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIQA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|301059923|ref|ZP_07200807.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300445978|gb|EFK09859.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 762

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/242 (8%), Positives = 61/242 (25%), Gaps = 33/242 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQLI 53
               + +  +  L  + + + H++  P+  I  +   L          +      +   I
Sbjct: 516 EQQLIQASKMATLGEMSTGVAHELNQPLSVIKTAGSFLHKKALKGGKIDDDTLKTLTAEI 575

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEK 108
                 A   +  MR     +  V   + L D          +     + +V +      
Sbjct: 576 NSQVDRASKIINHMREFGRKSDVVKEEVQLNDALTRALEIFRQQLKLREIKVALDLQQHL 635

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISV-----------QDSKNENIFSLKIN 154
             +  +     ++ +NL + A  ++       +             +   +  I  +   
Sbjct: 636 PTVMADSNRLEQVFINLLINARDAIEAKWWGNVDPKDKAKKITLRTRKKNSFAIVEIADT 695

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          +I +    +        +       +  +    +  E  +D     +  
Sbjct: 696 GIGI-SKAVIDKIFEPFFTTKQVGKGTGLGLSISYGIVRDYDGTISVESEEDKGSTFTIR 754

Query: 213 LE 214
             
Sbjct: 755 FP 756


>gi|226354971|ref|YP_002784711.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226316961|gb|ACO44957.1| putative histidine kinase, classic; putative membrane protein
           [Deinococcus deserti VCD115]
          Length = 528

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           +A+ +   L     S +      S   H++ +P+ AI      L       G + E +++
Sbjct: 279 LAQALNGMLGRLEQSFESQRRFTSDASHELRTPVTAISGHASYLLRRTSPTGQQAESLKI 338

Query: 53  IRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           I+  S      +  +                    +L       ++     A    + VS
Sbjct: 339 IQSESERLTNLIASLLQLARSDSGALVLNKAPIFSTLFLGEISRELAPLAQAQQTTLDVS 398

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +   +R  ++++NL   A  +  R   +  +++D   +    ++ +G      +
Sbjct: 399 GQDIPFEGDPDRLKQVIINLVGNALKAGARTVTLRSALEDGGTQVHLRVQDDGPGIPEDQ 458

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ D                 +       +   +  R+  E           LL 
Sbjct: 459 L-ERLFDRFYRLEDSRSRDQGGAGLGLSIAKGIVDAHGGRIWLESTLGQGTTAHVLLP 515


>gi|153939203|ref|YP_001390257.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152935099|gb|ABS40597.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295318353|gb|ADF98730.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 342

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERKEYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K +++ +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLKQKYYLDEQIRQTILLFEYQWTKKNITLDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     D + +    V  +    +  +     ++     +  L K
Sbjct: 287 KDRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIKISSHEEVGTEFTVKLPK 342


>gi|134292665|ref|YP_001116401.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           vietnamiensis G4]
 gi|134135822|gb|ABO56936.1| PAS/PAC sensor signal transduction histidine kinase [Burkholderia
           vietnamiensis G4]
          Length = 626

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 76/241 (31%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLEL-LD-------EVGI 45
                   S  +L           L + I H++  P+ AI  S E  L        ++  
Sbjct: 380 QAEQALERSRAELAHVTRVTMLGELAASIAHEVTQPLAAIVTSGEAGLRWLNHDVPDLDE 439

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---- 101
             + ++ +   +  A   ++ +R         D+L+ +  I +   D +  + +      
Sbjct: 440 VRDSIEQMTDDARRATDIIRQIRAMAKRNDRDDTLVDVTSIVEQSMDLMRRELQSHGVEV 499

Query: 102 ---VSWTGEKIDLSRERAKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKI 153
                 +        +  ++++NL M A  ++     PR      +          +++ 
Sbjct: 500 AQSCQPSLWVRGDRVQLQQVIINLLMNAVQAMSGVAGPRRTLAVSTRLVDGANAQITVED 559

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G+  +  +    +      +  +   +       +   +  R+  E  ++    +  +L
Sbjct: 560 SGHGIKTQDA-DSLFTPFFTTKKEGMGMGLSICRSIVEGHGGRIWAESQENEGTSMQFVL 618

Query: 214 E 214
            
Sbjct: 619 P 619


>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
 gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
          Length = 713

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 70/238 (29%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + +++   L   +    L S I HD+ +P+ +I   +E + +     +E M     +  +
Sbjct: 241 LKESVQIQLQYEENRKELLSNISHDLKTPMTSIIGYVEGIKDGVANTEEKMDKYLTTIYT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
               +  +         +D       ++ V       D     S+     D+  +     
Sbjct: 301 KAKDMDVLIDELFLFSKLDLKKVPFQMDSVNLQQYMHDYVEDASFDFIARDIHLQYISAG 360

Query: 116 ------------AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                        ++L NL   +   +     ++ IS+ +  ++ I  +  NG       
Sbjct: 361 SPLFAMADRDKLRRVLSNLLSNSEKYMDKPYKQIIISLHERVDDAIIQVTDNGTGIDPTA 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E    +  +        +   L+K
Sbjct: 421 LPHIFDRFYRAEPSRNSQTGGSGLGLAIAKQIVLEMGGDIWAKSELTKGTSIFISLKK 478


>gi|75764553|ref|ZP_00744017.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74487960|gb|EAO51712.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 278

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S + H++ +P   I +  E          +     + +++ 
Sbjct: 41  MFERLETSFESEK---QFTSDVSHELXTPTSVIISQCEYALSQKNNPKEMEESLEVILKQ 97

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D  + +  
Sbjct: 98  SRKISTLISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASIDITINIEK 157

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 158 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 217

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 218 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 273


>gi|94984196|ref|YP_603560.1| periplasmic sensor signal transduction histidine kinase
           [Deinococcus geothermalis DSM 11300]
 gi|94554477|gb|ABF44391.1| periplasmic sensor signal transduction histidine kinase containing
           HAMP domain [Deinococcus geothermalis DSM 11300]
          Length = 359

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 23/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55
           MA ++   +    +   L   + H++ +P+ A+   LE L +  +          + +R 
Sbjct: 131 MAASLE-RVEQDRVA--LIGNVGHELRTPLAALRGYLEALTDGVMVPSQAAPALRREVRA 187

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--------VQVSWTGE 107
               A       R+  G      ++     +     +                       
Sbjct: 188 IERLASDLSLVSRIEAGQVELSPTIFSARSLLTATLERFGDAYAARGVALLAQNPPDDLR 247

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                   A++L NL   A    P GG+VT++VQ +  +  FS+   G+     E   +I
Sbjct: 248 VRADFERAAQVLSNLLSNALRHTPPGGRVTLTVQAAGEQATFSVADTGSGI-PTEHLERI 306

Query: 168 VDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +         +  +   +       L  +   R+            +  L 
Sbjct: 307 FERFYRVDPARTRGEGSGVGLTIARSLVEQMGGRIGVTSGKG-GSTFTFTLP 357


>gi|329120846|ref|ZP_08249505.1| sensor histidine kinase [Neisseria bacilliformis ATCC BAA-1200]
 gi|327459656|gb|EGF05998.1| sensor histidine kinase [Neisseria bacilliformis ATCC BAA-1200]
          Length = 531

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 62/228 (27%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + I     +  L +L  L + + H+I +P+ AI ++ +LL E        +L  +   + 
Sbjct: 302 REIASEAMATKLASLGQLTANLAHEIRNPMSAIRHANDLLKEGSDNPMENKLHGIIDGNI 361

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-------- 112
               K +          +      ++ +    F                           
Sbjct: 362 RRIDKMLEEVSMLNKKDNLGREHINMMKFWLSFKQEFTLNNPDAVHCMKMEMQGKNLSVT 421

Query: 113 ---RERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQI 167
                  +I+ NL   A     +             K      +  NG     P+   ++
Sbjct: 422 ADPMHVQQIMWNLCNNAWRHSKKDENAIKVTIRPSGKLNISVVVSDNGPGV-PPDIRNRL 480

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +      +  Y    LAH N   L      +       +L K
Sbjct: 481 FEPFFTTAKGGTGLGLYVARELAHANLGELHYHPEMNG---FEFILPK 525


>gi|329113957|ref|ZP_08242724.1| Aerobic respiration control sensor protein ArcB [Acetobacter
           pomorum DM001]
 gi|326696704|gb|EGE48378.1| Aerobic respiration control sensor protein ArcB [Acetobacter
           pomorum DM001]
          Length = 1105

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 64/239 (26%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDL-VALLC-----SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           M  +     +      A L      S I H+I SP+ AI   ++LL          Q   
Sbjct: 639 MRMDQALQNAREKAEAASLAKTRYISGISHEIRSPLNAIMGYIQLLQHDARMPPERQKTL 698

Query: 55  LSSMSAII-----RLKFMRLAFGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVS 103
                +           + ++    G ++                 +    A  K ++  
Sbjct: 699 SIMRESGDHITSILSGLLDISRIEAGRIELHSDTIPLAAFLESVAQMMRPQAQAKGLKFY 758

Query: 104 WTGEK-----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           W  +              ++LLNL   A     +G  VT S +       F+++  G+  
Sbjct: 759 WKPQFLPSVVTCDEHRLRQVLLNLLSNAIKYTQQGS-VTFSARWHAQIAEFTVEDTGSGI 817

Query: 159 RFPEKFTQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              E   +I D        + I    +      LL       L               L
Sbjct: 818 AI-EDQERIFDPFERATATANIPGTGLGLTITKLLTEVMGGELTFTSTMGKGSCFKLRL 875


>gi|307151277|ref|YP_003886661.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306981505|gb|ADN13386.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1719

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/249 (9%), Positives = 71/249 (28%), Gaps = 37/249 (14%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLS 56
            ++I        +     S + H++ +P+ AI  SL +L+      E    + ++++   +
Sbjct: 1461 QDISERHKLDRMKDEFISIVSHELRTPLTAIRGSLGILESGVLNDEPLTANRMLKVALNN 1520

Query: 57   SMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTG 106
            S          + L    +G  + ++    +  ++E  +   + +           +   
Sbjct: 1521 SERLARLVNDILDLERLESGKTELVMKPCQVSDLMEQAVESVEAIANLASIRINFTAVEA 1580

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVT----------------ISVQDSKNENIFS 150
            +         + L+NL          G  +                        +  +FS
Sbjct: 1581 QVWADFDAIVQTLINLLGNGIKFSDPGSMIWLKAQRSNGEWGLQKSENFPHLGSSYLLFS 1640

Query: 151  LKINGNLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
            ++  G      +    F +    +           +       +  ++  ++  E +   
Sbjct: 1641 IEDQGRGIPSDKLESIFGRFQQVDVSDSRQKGGTGLGLAICKSIIEQHNGKIWVESVVGQ 1700

Query: 206  NVVLSALLE 214
              +    L 
Sbjct: 1701 GSIFYFTLP 1709


>gi|282898864|ref|ZP_06306851.1| Multi-sensor Hybrid Histidine Kinase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196391|gb|EFA71301.1| Multi-sensor Hybrid Histidine Kinase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 636

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 28/235 (11%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------RLSSMS 59
                ++ +  L S I HD+ + +  I  + ++L+    +++  QLI       +  +  
Sbjct: 257 IRAQRLESIGALASGIAHDLNNVLTPILMTAQILETQVKDEKPRQLIPILIANAKRGANL 316

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116
               L F R   G    +     L +I+ +I++       +          +  +     
Sbjct: 317 VKQVLSFARGMEGERTILQIKHLLIEIQNIIKETFPKFIILTTEIPQSLWTVCGDATQLH 376

Query: 117 KILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++L+NL + A  ++P                    T +        + S++  G   +  
Sbjct: 377 QVLMNLCINARDAMPNGGTLSIKSENLLIDNHYIQTHTDFKPGAYVLISIRDTGVGIKPT 436

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I +    +        +    V+ +   +   +     ++        L 
Sbjct: 437 -LIDRIFEPFFTTKDVGQGTGLGLSTVLGIVKAHGGFINVYSRENKGSEFQVYLP 490


>gi|254458747|ref|ZP_05072171.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
 gi|207084513|gb|EDZ61801.1| signal transduction histidine kinase [Campylobacterales bacterium
           GD 1]
          Length = 685

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 68/240 (28%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      S+ ++ +   + + H+I +P+ AI    +LL++   +      ++    S+
Sbjct: 217 LKQAKEEADSANNMKSEFLANMSHEIRTPMNAIIGFTDLLEKSVKDTTNQNYVKSVQDSS 276

Query: 61  IIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            I                  + +    T        + ++        A+  +V +  + 
Sbjct: 277 KILLAIINDILDLSKVEAGKLEIQHIATDIRTIGDEIKNVFYHKAKSKALKLKVNIEESV 336

Query: 107 EK--IDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLAR 159
               +       ++LLNL   A    P          +++   +       ++ +G    
Sbjct: 337 PSSLMLDEVRTRQVLLNLISNAIKFTPEGFVNLNIFSSLNQDTNLINLTIEVEDSGIGMD 396

Query: 160 FPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E+          +           +       L       +  +   D+      +L 
Sbjct: 397 KSEQDKMFEAFAQHTNQSNKEYGGTGLGLAITKKLVTLMGGDISVKSSKDNGSTFRIILP 456


>gi|206890281|ref|YP_002248584.1| sensor histidine kinase [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206742219|gb|ACI21276.1| sensor histidine kinase [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 567

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 64/226 (28%), Gaps = 22/226 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVMQLIRLSS 57
            +  L ++  L + + H+I +P+  I+    L+ +               +++  I+ S 
Sbjct: 334 HADKLASIGRLAAGVAHEINNPLAIINEKAGLMKDLLEYGDISQNKERFIQLISSIQDSV 393

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLS 112
                    +               + +        + ++  A   ++   +      ++
Sbjct: 394 TRCRTITHRLLSFSKKIDKAREDFYINEAIQEVIGFIEKEIQAKGIKIVYDFEENLPKIT 453

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARFPEKFTQIV 168
            ++ ++   L  + + ++                  N    S+K NG      ++   I 
Sbjct: 454 TDKGQLQQVLLNIINNAVDVVDIGGQIEIKTKLIDDNHIKISIKDNGPGI-PKDRLKHIF 512

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +      +  Y    +  +    +          + S  + 
Sbjct: 513 EPFYTTKKKGTGLGLYISYGIIKKLGGDIKVMSEVGKGSIFSIEMP 558


>gi|170743253|ref|YP_001771908.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168197527|gb|ACA19474.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 869

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 29/233 (12%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            M++V  L   I HD  + + AI    +LL      V    + +  I+ ++  A   ++ 
Sbjct: 476 KMEMVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPVDPAFQDIMQIKQNANRAASLVRQ 535

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERAKIL 119
           +            +I LGD    +   +      +V    +             +  +++
Sbjct: 536 LLAFSRRQTLRPEVIHLGDALSDLTLLLKRLLGERVELDLKHGRDLWPVKADVNQFEQVI 595

Query: 120 LNLFMVAHASLPRGGKVTISVQDSK---------------NENIFSLKINGNLARFPEKF 164
           +NL + A  ++P GG++ I   +                 +  +  +   G     PE  
Sbjct: 596 VNLAVNARDAMPNGGRLAIRTANVAAEAAGALQLTGLPAADYVLVEVADTGTGM-TPEIM 654

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I +    +        +    V  +  ++   +  +       V    L +
Sbjct: 655 EKIFEPFFTTKEVNKGTGLGLSTVFGIVKQSGGYIDVKSTVGEGTVFGIYLPR 707


>gi|163848410|ref|YP_001636454.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|163669699|gb|ABY36065.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
          Length = 403

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 56/236 (23%), Gaps = 40/236 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLKFMRLAFG-- 72
           L + + H++ +P+ ++   +E +      D    +++ +     +    +  +       
Sbjct: 167 LVANVSHELRTPLASLKLLVETVQSAPPPDIASRMLEQMAQEIDAVTQLVDELHELSRLE 226

Query: 73  ------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKILLNL 122
                     +     +    + I       ++V        +           ++LLNL
Sbjct: 227 SGRVSLKLEPLPVWPVIERAVERIRPQADRKQQVICVEPAADLPLALMDGDRIGQVLLNL 286

Query: 123 FMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              A    P                  +  +       +    +  +   G      +  
Sbjct: 287 LHNAVKFTPEGGTITVAAEVLTLRDDEQPSRPDRPPHPAGTWLLIRVSDTGIGIPNRDI- 345

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +                 +       L   +  R+     + H       L 
Sbjct: 346 QRIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRIWASSQEGHGSTFWFTLP 401


>gi|121726132|ref|ZP_01679430.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|153831310|ref|ZP_01983977.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|121631351|gb|EAX63723.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|148873207|gb|EDL71342.1| sensor histidine kinase [Vibrio cholerae 623-39]
          Length = 497

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIR 54
           A     N+ +          L + + HD+ +P+GAI  S   L +  +    +   +L+ 
Sbjct: 253 AHRTLANVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLT 312

Query: 55  LSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             +       + +                    V+    +G +   +   +   K    S
Sbjct: 313 SIAEQGERLNRSLTKLLDITRYTATALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIES 372

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S    ++L+NL   A    PRG ++ I+      +   ++  NG      E 
Sbjct: 373 QPMLVELDSLLIEQVLINLVENAAKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PDEA 431

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D       +  D   +      ++   ++  +     +      +  + 
Sbjct: 432 LPRIFDRFYRVEGNHADGTGLGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|308188418|ref|YP_003932549.1| Osmolarity sensor protein EnvZ [Pantoea vagans C9-1]
 gi|308058928|gb|ADO11100.1| Osmolarity sensor protein EnvZ [Pantoea vagans C9-1]
          Length = 455

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 62/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
            T   D    LG++      +    +   +              + L NL + A      
Sbjct: 295 QTERADLNSVLGEVVAAESGYEREIENAVMPEELMLDINPLSIKRALANLVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G   +       F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGRELH--RAWFQVEDDGPGIKPDQLAHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              ++  L     +   + + A L 
Sbjct: 413 IDAHQGSLEIGESERGGLRIRAWLP 437


>gi|291527567|emb|CBK93153.1| Signal transduction histidine kinase [Eubacterium rectale M104/1]
          Length = 440

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 63/222 (28%), Gaps = 19/222 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           L++        + + H++ +P+ AI    EL++   +E E              RL  + 
Sbjct: 217 LAAAKSRQDFTANVSHELKTPLTAISGYAELIENGMVEKEQQIHFATEIRRNAQRLLSLI 276

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKIDLSRE 114
                   +DS       EQ+    +  D    +                        + 
Sbjct: 277 NDIIKLSELDSSEAQQGFEQLDLYGLVKDCMETLQVNAEQRKVALNFDGTDCMVRGNRQL 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             +++ NL   A      GG V ++V     + + +++ NG      +    F +    +
Sbjct: 337 LTELVENLCQNAIRYNNEGGTVNVTVHKLGGKTVLTVEDNGIGIPKDQQERVFERFYRVD 396

Query: 172 VES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                      +    V  +   +   L  +        +  
Sbjct: 397 KSRSKETGGTGLGLAIVKHIVQLHDAGLTLDSEVGRGTTIKV 438


>gi|238926848|ref|ZP_04658608.1| integral membrane sensor signal transduction histidine kinase
           [Selenomonas flueggei ATCC 43531]
 gi|238885380|gb|EEQ49018.1| integral membrane sensor signal transduction histidine kinase
           [Selenomonas flueggei ATCC 43531]
          Length = 426

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/221 (9%), Positives = 59/221 (26%), Gaps = 24/221 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67
              +   H++ +P+  +  S +LL                     ++  +      L   
Sbjct: 196 QFAADASHELRTPLAVVLASADLLRSDPTITSPFLKQVIEDVRDEVKKMTKLVSDLLTVA 255

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWTGEKIDLSRERAKILL 120
           R            + +  + +     +           +  +    E     ++  +++L
Sbjct: 256 RTDGKALQLKPVRMDIAAVARQTVRMMRAFAEKKDIAIKEMLPSHMEIYADEQKIRQLIL 315

Query: 121 NLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNV------E 173
            L   A       G + +S+  S+N     S+  +G      E   +I D          
Sbjct: 316 ILIDNAVKYTLDHGHIMVSIVLSENGRIHLSVADSGIGI-AAEDQGRIFDRFYRVDKARS 374

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  + +       +   +   +  E       +    L+
Sbjct: 375 RRMGGNGLGLAIAREIVEAHHGTITLESEVGKGTIFHVYLK 415


>gi|229521820|ref|ZP_04411238.1| nitrogen regulation protein NR(II) [Vibrio cholerae TM 11079-80]
 gi|229341414|gb|EEO06418.1| nitrogen regulation protein NR(II) [Vibrio cholerae TM 11079-80]
          Length = 354

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 119 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPTLMEYTQIIIEQA 177

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 178 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLIFERDYDPSLPNILMDT 237

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 238 DQIEQALLNIVSNAAQILANQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 296

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 297 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 349


>gi|261368148|ref|ZP_05981031.1| PAS/PAC sensor signal transduction histidine kinase
           [Subdoligranulum variabile DSM 15176]
 gi|282569912|gb|EFB75447.1| PAS/PAC sensor signal transduction histidine kinase
           [Subdoligranulum variabile DSM 15176]
          Length = 477

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 64/232 (27%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           N+   L ++D         I H++ +P+  I   ++ + +           + ++   + 
Sbjct: 243 NMAMRLQTIDNSRGQFMGNIAHELRTPMTTIKGFIDGMLDGTIPPEENQHYLTIVSQETG 302

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-----------TGE 107
                ++ M            +             + +    ++                
Sbjct: 303 RLARLVQNMLDITKLEAGEVPVHAQNYDLWKTVTDVVLSDEQRIEDGKIDIQGLGGPPLA 362

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164
                    +++ N+   A    P GG ++ + Q   N     ++  G        P  F
Sbjct: 363 IYADPDFVHQVVYNIVDNAIKFTPEGGTISFAAQKKGNMVEVRIENTGAGIAPEALPFVF 422

Query: 165 TQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +    ++     +  +   +L + +  ++  E  +         L 
Sbjct: 423 ERFYKEDRSRGMNTRGSGLGLHICKILINLSGGQIHAESEEGKWCRFVFTLP 474


>gi|159038627|ref|YP_001537880.1| histidine kinase [Salinispora arenicola CNS-205]
 gi|157917462|gb|ABV98889.1| histidine kinase [Salinispora arenicola CNS-205]
          Length = 369

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 66/215 (30%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG--IEDEVMQLIRLSSMSAIIR-----------L 64
           L + + H++ +P+  I   LE  ++     ++++  ++R  +                  
Sbjct: 148 LLADLGHELRTPLATIEAYLEAAEDGVAVDDEDLQSVLRAQTARLHRLADDIAAVSRAET 207

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
             + L    T   D +       +       V  R  +  + +     +   ++L NL  
Sbjct: 208 HQLDLHPVRTAPADLVRDAVAAVRPRYAGKGVTLRSDLRPSPQVDVDPQRMGQVLGNLLD 267

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTI--DSH 179
            A    P GG VT+ V         ++   G        P  F +    +          
Sbjct: 268 NALRHTPEGGTVTVHVIGGARSVELAVADTGPGIPAQHLPHVFERFYRVDTARDRDNGGS 327

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I    V  +   +  R+  + +     ++  +L 
Sbjct: 328 GIGLAIVRAVVSAHGGRVRADNVPGGGTMVKVVLP 362


>gi|94270842|ref|ZP_01291836.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93450644|gb|EAT01749.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 650

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 69/238 (28%), Gaps = 29/238 (12%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLIRLSSMSA 60
                  M+ V  L   + HD  + +  I       L+ L       + +Q I  +   +
Sbjct: 273 QLQQAQKMESVGRLAGGVAHDFNNMLSVILGYGALLLQQLRPGDPLRDEVQEIVTAGNRS 332

Query: 61  IIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
               + +    R        +D    + ++E+++   I  D +++++ + +   +  +  
Sbjct: 333 AALTRQLLAFSRKQSLQPEVLDLNALVRNLEKMLPRLIGEDIKLELALSEKLDRVLADPG 392

Query: 117 KILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNLA 158
           +I   +      A  ++P GGK                           + ++   G   
Sbjct: 393 QIEQVIINLAVNARDAMPMGGKLLIETSEVELGDAYGQNHPGVVPGKYVMLAISDTGCGM 452

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I D    +        +    V  +  ++   +       H       L 
Sbjct: 453 -EKELLAKIFDPFFTTKEMGKGTGLGLATVYGIVKQSGGNIWVYSEPGHGTTFKIYLP 509


>gi|1401270|gb|AAB08575.1| RcaE [Fremyella diplosiphon Fd33]
          Length = 655

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 66/242 (27%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVG 44
           ++ +I    +   +     S I H++ +P+ ++H++L                ++L    
Sbjct: 407 LSSDISDRKAIERMKDEFISIISHELRTPLTSLHSALKILATGRLGTLSTEGQQMLGIAD 466

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              E +  +  + +          +      +  +L+                  V+   
Sbjct: 467 DSTERLVRLVNNVLDLQRIESGKVIMECQACNAANLMIQAAEAMQAMAQQQEVTLVKQPQ 526

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT------ISVQDSKNENIFSLKINGNLA 158
                  +    + L NL   A      GG V        +  ++  E +F ++  G   
Sbjct: 527 DISVWADADYILQALTNLLSNAIKFSSPGGTVWLTVEQEKNSSNNPKEVVFRVRDEGQGI 586

Query: 159 RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +   +I +                 +       +  ++  R+  E         +  
Sbjct: 587 PADQL-ERIFERFQQVDSSDSRKKGGTGLGLTICRKIIEQHNGRIWAESTPGCGSTFAFT 645

Query: 213 LE 214
           L 
Sbjct: 646 LP 647


>gi|27376401|ref|NP_767930.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27349541|dbj|BAC46555.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 618

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 60/221 (27%), Gaps = 22/221 (9%)

Query: 15  VALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLSSMSAI--------I 62
              +   + H++  P+ AI  + E    +L     +   ++ I                 
Sbjct: 394 AGEMSVSLAHELNQPLAAILINAETAQQILQSPAPDLGEIRDILNHIRRDDQRAAEVIGR 453

Query: 63  RLKFMRLAFGYTGSVDSLIGL-GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
              F++        +D    +      +    +  D  + +  +   I +  ++ ++   
Sbjct: 454 LRSFLKRDPTERSELDLNATVGEVFRFLSVQALTHDVELVMQPSSADIRVKGDKIQLQQA 513

Query: 122 LFM---VAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +         ++         V         N  + S+   G+     EK  +I      
Sbjct: 514 ILNLVVNGMEAVAHLPDERRRVVGRTSLTEGNLALVSIADKGDGI-LAEKVAEIFKPFFT 572

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I       +   +  R+  E +    VV    L 
Sbjct: 573 TKAQGMGIGLSIAHTIVQAHGGRIWAENVPSGGVVFHVSLP 613


>gi|163849118|ref|YP_001637162.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222527091|ref|YP_002571562.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
 gi|163670407|gb|ABY36773.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
 gi|222450970|gb|ACM55236.1| integral membrane sensor signal transduction histidine kinase
           [Chloroflexus sp. Y-400-fl]
          Length = 554

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 53/220 (24%), Gaps = 26/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+ AI    +LL           + ++ I  S    +  +  +        
Sbjct: 313 ATMSHELRTPLNAILGYAQLLHLSNAVSEPHADYLERILSSGRHLLTLISDVLDFARIEQ 372

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                       +            + +           +  G      R   ++L+NL 
Sbjct: 373 GALELEYRQVAIAPLVEDVATMTLPLAQRNHNQVITCYPADIGSIETDDRRLRQVLINLL 432

Query: 124 MVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
             A     R      V    +   +   F +   G      +K  ++          V  
Sbjct: 433 GNAAKFTERGTIRLNVVREQRHGIDGIRFDVIDTGIGI-PRDKQDKLFKPFSQIDESVTR 491

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +       +       +  E         +  L 
Sbjct: 492 RYEGTGLGLALSKQIVLALGGTIDVESDFGVGSTFTVWLP 531


>gi|331083608|ref|ZP_08332719.1| hypothetical protein HMPREF0992_01643 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403819|gb|EGG83371.1| hypothetical protein HMPREF0992_01643 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 515

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
                    +  L A L   I HD+ +P+ +I  +  +L    +   +++  QL      
Sbjct: 274 RAAAALMAKNEQLRANLLRSISHDLRTPLTSISGNAGILISNADSMGKEKQQQLYEDIYE 333

Query: 59  SAIIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            ++  +  +      T   D           L  +        +      +++V  +   
Sbjct: 334 DSLWLINLVENLLSVTRIEDGTMKLQLNAELLEEIVQEAVHHVEKRCKKHKLRVQLSENL 393

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +  +     ++L+NL   A    P+G ++ I  +      + S+  NG+     E   
Sbjct: 394 ILVKADARLIVQVLVNLVDNAVKYTPKGSEILIETRQEGTNAVVSVSDNGSGI-SDEVKE 452

Query: 166 QIVDGNVESTIDSH------DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +        +        +       + H +   +  E    H       L 
Sbjct: 453 YIFEMFYTGNSHAADSRRSLGLGLALCKSILHAHGGDIFVEDCQPHGARFIFTLP 507


>gi|323143008|ref|ZP_08077714.1| PAS domain S-box protein [Succinatimonas hippei YIT 12066]
 gi|322417202|gb|EFY07830.1| PAS domain S-box protein [Succinatimonas hippei YIT 12066]
          Length = 584

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 67/231 (29%), Gaps = 20/231 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++     +        + + H++ +P+ +I    EL++   +++  ++       S   R
Sbjct: 335 DVTEKRRAERQRQEFTANVSHELKTPLQSIIGCAELIENGLVKNGDLEAFAGRIRSQGSR 394

Query: 64  LKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSWTGEKIDL 111
           L  +         +D L                  E +          +           
Sbjct: 395 LVRLIEDIILLSRLDELHESMHETVSFNQITKEVFESIAHKAEEHHIELIKEGPDITYYG 454

Query: 112 SRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 +++ NL   A       G V +  ++++ + I  +K NG      E   +I + 
Sbjct: 455 VYRYLYELIYNLCDNAVKYGKDQGYVKVITEETEKKIIIKVKDNGIGIPI-EHQARIFER 513

Query: 171 NVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +    +    V  +   +K ++  E  +          +K
Sbjct: 514 FYRVDKSPPRRMGGTGLGLSIVKRVVLFHKGKIKLESKEGVGSTFIVCFKK 564


>gi|302342067|ref|YP_003806596.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301638680|gb|ADK84002.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 1094

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM 58
           AK       +  + A+  L   I HD  + + A++   EL L+++       Q +     
Sbjct: 710 AKLERQLRQAQKMEAIGALAGGIAHDFNNILSAMNGYAELALEDLPAGHSSRQCLEQVLR 769

Query: 59  SAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTGEK 108
           +           L F R +      +     L ++  ++   +     +           
Sbjct: 770 AGARAKGLIRQILGFSRPSDETRRPLRLATVLEEVLTLLRSSLPATIEIIQRVEAADELV 829

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-----------SVQDSKNENIFSLKINGNL 157
           +    +  ++LLNL   A  ++     V                 +      S++ +G  
Sbjct: 830 MADPTQMHQVLLNLCTNAAQAMEGQRGVLELGLEAVELGLGQRLPAGRWLRLSVRDSGRG 889

Query: 158 ARFPEKFTQIVDGNVESTIDS-HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                              +    +       +   +   +          +    L 
Sbjct: 890 MDQATLARIFEPFFTSRKAEGGTGMGLAVAHGIVTSHGGAIEARSRPGQGSLFEIYLP 947


>gi|296445825|ref|ZP_06887777.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
 gi|296256653|gb|EFH03728.1| multi-sensor hybrid histidine kinase [Methylosinus trichosporium
           OB3b]
          Length = 839

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 71/237 (29%), Gaps = 32/237 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   + HD  + + AI    +LL           + +  I+ ++  A   
Sbjct: 462 QSQKMQAVGQLAGGVAHDFNNMLTAIIGYSDLLLANHRPTDPSFQDIIQIKQTANRAAGL 521

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERA 116
            + +            ++ LGD+   ++  +      +V                  +  
Sbjct: 522 TRQLLAFSRRQTLRPQVLQLGDVLSELQLLLRRLVGEKVEVDLKHGRDLWFVKADINQLE 581

Query: 117 KILLNLFMVAHASLP----------------RGGKVTISVQDSKNENIFSLKINGNLARF 160
           ++++NL + A  ++P                       +   +    +  ++ NG+    
Sbjct: 582 QVVINLVVNARDAMPESGGRITLRTRNIAAADCASFGEASLAATEYVLIEVEDNGSGI-P 640

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   +I +    +        +    V  +  ++   +  +       V   LL +
Sbjct: 641 ADVKAKIFEPFFTTKEVGKGTGLGLAMVFGIVKQSGGFVFVDSEVGRGTVFRILLPR 697


>gi|322419916|ref|YP_004199139.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
 gi|320126303|gb|ADW13863.1| integral membrane sensor signal transduction histidine kinase
           [Geobacter sp. M18]
          Length = 456

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 63/227 (27%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           MA+ +        L   + +   H++ +P+  +   LE + +     E  V++ +   ++
Sbjct: 225 MAQTLE---KQDALRKKINANFAHEMRTPLAIMQGQLEGMLDGLIPNERRVLESLLEENL 281

Query: 59  SAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                +             + L          L  +            +   V+ +    
Sbjct: 282 RLARIVTNVEELVQAEASALSLKRIRLPLKQLLESIAQRFSEAGGKKNIIFTVECNDEVR 341

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +IL+NL   A  ++  GG + ++    +      +  +G      ++   I
Sbjct: 342 VYADPERLTQILINLVTNAIKAIDSGGTIQLNGAAEREGCRIDVIDSGRGIAEADQPL-I 400

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           +    V  L   +   +            +  L 
Sbjct: 401 FERFFRKDSTGLGLGLPIVRELVDAHGGTIEVSSRPGEGSSFTVRLP 447


>gi|237715093|ref|ZP_04545574.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262408958|ref|ZP_06085503.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
 gi|229444926|gb|EEO50717.1| two-component system histidine kinase [Bacteroides sp. D1]
 gi|262353169|gb|EEZ02264.1| two-component system histidine kinase [Bacteroides sp. 2_1_22]
          Length = 786

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 56/234 (23%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK I       +L     + + H+I +P+ AI     LL   G ++   +         
Sbjct: 550 LAKQIA---EKAELKQSFLNNMSHEIRTPLNAIVGFTNLLIGEGADEIEPEEKAAMIEIV 606

Query: 61  IIRLKF-------------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
               +                          +  +          + +I+  +     + 
Sbjct: 607 NNNNELLLKLVNDVLEISRLDSGNLSFDIKEHNITKIIKEIYVTYQTLIQPSLCFILELD 666

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF 160
            + +           +++ N    A+     G          +++     +K  G     
Sbjct: 667 ETVSLPVNIDCFRFTQVISNFLNNANKFTKDGTITLGCKIYKEHQEVCVYVKDTGKGIDD 726

Query: 161 PEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E              +    +      ++      R+            S +L
Sbjct: 727 KELMMIFDRFYKTDEFEQGSGLGLSICKVIIERLAGRIEVHSEVGKGSCFSVIL 780


>gi|196229659|ref|ZP_03128523.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196225985|gb|EDY20491.1| PAS/PAC sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 1055

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 70/244 (28%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVM 50
            + +   +  S  + A+  L   I HD  + + AI     LL E   +         ++M
Sbjct: 665 RRQLEDEVRQSQKMEAVGRLAGGIAHDFNNLLSAIQMQSALLLETAPDDGVTREGIRDIM 724

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                ++      L F R        +D    +G + +++   +  D  ++  +      
Sbjct: 725 TAADRATHLTRQLLTFSRRNVKQARDLDLTEVVGAMNKLLLRMLGEDIVLESRFASPLPM 784

Query: 111 LSRER---AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLK 152
           +  +     ++L+NL + A  ++P                          +      S+ 
Sbjct: 785 VHADPGMVEQVLMNLAINARDAMPTGGRLIVTLDLANVDAEAAAAKPGISAGRFVCLSVS 844

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      +   +I +    +        +    V  +  ++   +  E          
Sbjct: 845 DTGCGIAAADLS-RIFEPFFTTKEIGRGTGLGLAIVFGIVEQHHGWIDVESALGLGTTFR 903

Query: 211 ALLE 214
             L 
Sbjct: 904 VFLP 907


>gi|168702150|ref|ZP_02734427.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 997

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV-------MQLIR 54
           +        M+ +  L   I HD  + +  I+   EL L ++  +D              
Sbjct: 619 EEQFRQAQKMEAIGQLAGGIAHDFNNLLTVINGFSELTLRQLPTDDPCQPLVTEIRDAGE 678

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            ++      L F R        +D    +     ++   +    R+ V        +  +
Sbjct: 679 RATRLTRKLLTFSRKEVVEPVVLDLNATVDGARGMLRWLLGEGVRLVVKSDPRLDRVRAD 738

Query: 115 ---RAKILLNLFMVAHASLPR-------------GGKVTISVQDSKNENIFSLKINGNLA 158
                +++LNL + A  ++P               G        +      S+   G   
Sbjct: 739 AGHVEQVILNLAVNARDAMPHGGTLTVGTANVTSDGPSGPGRVPAGRYVRLSVADTGVGM 798

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   +I +    +        +    V  +  +    +                 
Sbjct: 799 -TEEIQAKIFEPFFTTKAIGQGTGLGLSTVYGIVQQTGGHIRVTSAPGRGATFEVYFP 855


>gi|220915684|ref|YP_002490988.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953538|gb|ACL63922.1| histidine kinase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 237

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 67/205 (32%), Gaps = 10/205 (4%)

Query: 20  SRICHDIISPIGAIHNSLEL-LD--EVGIEDEVMQLIRLSSMSAII-RLKFMRLAFGYTG 75
           + + H++ +P+ A+   ++L L         E ++ +  +          ++  A G   
Sbjct: 29  ATLAHELKNPLTAVKALVQLGLANPREAASHERLEQVARAVERMERILRDYLASARGMAE 88

Query: 76  SVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASL 130
              + + +G +       +         R+            R   + L+NL      + 
Sbjct: 89  LAPAQVEVGPLVTGVLQGLSARASEARVRLVARGDATVEADPRRLEEALVNLVANGIEAT 148

Query: 131 PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLA 190
           P GG+V + V  S       ++  G+     +   ++      +    + +   +V  + 
Sbjct: 149 PPGGEVAVEVLSSAEGAELVVRDTGSGI-TADALERLGTPFFSTRSGGNGLGVAHVRSVI 207

Query: 191 HENKIRLLPEIIDDHNVVLSALLEK 215
             +   L  E       V+ A L +
Sbjct: 208 AMHGGSLRYESEPGKGTVVRATLPR 232


>gi|297580266|ref|ZP_06942193.1| sensor protein tors [Vibrio cholerae RC385]
 gi|297535912|gb|EFH74746.1| sensor protein tors [Vibrio cholerae RC385]
          Length = 1020

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 56/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK       +    +   + + H+I +P+  +  +  LL +  +       +++ + S  
Sbjct: 493 AKARQQAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTSTQQHYVQVINRSGR 552

Query: 62  IRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVD---------KRVQVSWT 105
             L  +     Y+           +   L  + +   + +              +    T
Sbjct: 553 SLLAILNDVLDYSKIEAGHLEIDQAHFDLYRLVRETHELMQSRAREKGITLTYHIDEDVT 612

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFPEKF 164
                      ++L NL         +G                F+++ +G      E+ 
Sbjct: 613 QYWQGDEIRIGQVLNNLVGNGIKFTEQGEVRIRIRLALDGQGIRFAVEDSGIGIAEEEQA 672

Query: 165 TQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T              +    +       L       L               L 
Sbjct: 673 TLFDAFTQADAGRRKLGGTGLGLAISRKLVKAMGGELQLASQLGQGSCFWFTLP 726


>gi|197119311|ref|YP_002139738.1| substrate-binding sensor histidine kinase response regulator
            [Geobacter bemidjiensis Bem]
 gi|197088671|gb|ACH39942.1| periplasmic substrate-binding sensor histidine kinase response
            regulator, PAS and Hist_Kin_Sens domain-containing
            protein [Geobacter bemidjiensis Bem]
          Length = 1279

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 64/235 (27%), Gaps = 31/235 (13%)

Query: 10   SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--------MS 59
             S  + A+  L   I HD  + +  I     LL+  G      +                
Sbjct: 904  QSQKMEAVGHLAGGIAHDFNNILTVIVGYGNLLEMDGSLTPHQKEQVEQIVAASERGAQL 963

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                L F R        +D    +  I++ +   I  D R++ +   + +++  + +++ 
Sbjct: 964  TRGLLTFSRRQIMNPCVLDLNALVNQIQKFLLRIIGEDIRLRFNPHPDALNVWADASQLE 1023

Query: 120  LNLFM---VAHASLPRGG---------------KVTISVQDSKNENIFSLKINGNLARFP 161
              L      A  ++P+GG                 +             +   G      
Sbjct: 1024 QILMNLATNARDAMPQGGGLSIETGVQEIDEAYARSQGYGSPGRYACMMVSDTGEGMDQK 1083

Query: 162  EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +I +    + +      +    V  +  ++K  +               L 
Sbjct: 1084 -TRERIFEPFFSTKVVGKGTGLGMSIVYGIVKQHKGFINVYSEPGEGTAFKIYLP 1137


>gi|148656419|ref|YP_001276624.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
 gi|148568529|gb|ABQ90674.1| multi-sensor signal transduction histidine kinase [Roseiflexus sp.
           RS-1]
          Length = 905

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 63/251 (25%), Gaps = 40/251 (15%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
           ++    + S  L       + H++ +P+ +I    +LL           + E + +I+ +
Sbjct: 654 RDRTREVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLVMGNLGPVNETQREFLNIIQSN 713

Query: 57  SMSAIIRLKFMRLAFGY---------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105
           +   I  +  +                    +      +  +        + + +S    
Sbjct: 714 AERMIAIINDLLDITKIETGSVELEIRPIHVAETLSKVLLDLQTKVHERQQTLTLSLPAG 773

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIF 149
                  +    +IL NL   A    PR                 +              
Sbjct: 774 LPLVRADAHRFNQILFNLVSNAVKYTPRGGSITIEAREVTAEAVPEDERDGLRPGRYIQI 833

Query: 150 SLKINGNLARFPEKFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIID 203
            ++  G      +   +I +    +            +    V  L      R+  E   
Sbjct: 834 DVRDTGVGIAPDDVP-RIWERFYRTENPLKVEAGGTGLGLSLVKPLVRLLGGRIWVESRI 892

Query: 204 DHNVVLSALLE 214
           +     S +L 
Sbjct: 893 NVGSTFSFVLP 903


>gi|90580520|ref|ZP_01236326.1| sensor histidine kinase [Vibrio angustum S14]
 gi|90438429|gb|EAS63614.1| sensor histidine kinase [Vibrio angustum S14]
          Length = 488

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 18/222 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIR 63
               +   L + + HD+ +P+G+I  S   L +         + E++Q I     S    
Sbjct: 257 QLEQMRNTLLAAVSHDLKTPLGSIIGSATTLSDSTIKLPLDTQKELLQSIAEEGYSLNRS 316

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE--------R 115
           L  +     Y+             + +           V      +              
Sbjct: 317 LTKLLDISRYSTKTLIPNRDWVEPEEVIGSATKRIEQVVKLHPINLTGETMLVSLDYALI 376

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
            +I+ NL   A    P G  + I+    K      +   G      E   +I +      
Sbjct: 377 EQIIANLIENAAKYSPVGKAIDITTNYQKGCFSIEIADRGCGVAPDE-TQRIFERFYRSE 435

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +      L+   +   +          + +  + 
Sbjct: 436 HTKVKGTGLGLAICKLIVSAHNGTISVSPRIGGGSIFTVTIP 477


>gi|91976421|ref|YP_569080.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
 gi|91682877|gb|ABE39179.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB5]
          Length = 607

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLS 56
           + +       +    +   + + H++ +P+ AI    +++              +  +L 
Sbjct: 339 LEQARAEASRADASKSRFLATMSHELRTPLNAIIGFSDMILHEDELMLAPERRKEYAQLI 398

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102
           + S    L  +      +        +          +     +                
Sbjct: 399 NDSGQHLLSVVNGILDMSKMESGNFEIVPEPFAPRPALLNCCNLLALKARENGIELVTRA 458

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                E +  +R   +ILLNL   A     RGG V++         +  ++ NG      
Sbjct: 459 PEDLPEIVGDARAFKQILLNLVSNAIKFTERGGTVSVEAAVEAARLVLRVRDNGVGIAAE 518

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D         +   +   +    V  L   +  ++      D   +++  L 
Sbjct: 519 DLK-RIGDPFFQAGKTYQRRHEGTGLGLSIVKSLVGLHGGKIDVTSEVDRGTIVTISLP 576


>gi|194335818|ref|YP_002017612.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme
            BU-1]
 gi|194308295|gb|ACF42995.1| multi-sensor hybrid histidine kinase [Pelodictyon phaeoclathratiforme
            BU-1]
          Length = 1419

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 63/241 (26%), Gaps = 30/241 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
            ++       ++ +  L   I HD  + +  I    E+    L     + +    I  ++ 
Sbjct: 1013 ESRMRKTQRLETIGTLAGGIAHDFNNILTPIMGYAEMGLLTLSGDAPQHDYFSEIVNAAD 1072

Query: 59   SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             A   +     F R        V     L +  +++   I     +  +   E  ++  +
Sbjct: 1073 RAQNLVSQILTFSRAQESTPSVVSVQSILQEALKLLRPSIPATISISQNIERECRNILAD 1132

Query: 115  R---AKILLNLFMVAHASLPRGGKV----------------TISVQDSKNENIFSLKING 155
                 ++++NL   A  ++   G                   +           ++   G
Sbjct: 1133 PSKIHQVVVNLCTNAFQAMEGNGGDLSIELKEITLEGELGKELPKIGPGRFVNLTVSDTG 1192

Query: 156  NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      +I +    +        +    V  +       +  +    +    S  L
Sbjct: 1193 CGM-DDATMERIFEPFFTTKSVNKGTGLGLSVVHGIIKSFGGEITVQSRKGNGSSFSIFL 1251

Query: 214  E 214
             
Sbjct: 1252 P 1252


>gi|15642741|ref|NP_232374.1| nitrogen regulation protein NR(II) [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586632|ref|ZP_01676417.1| nitrogen regulation protein [Vibrio cholerae 2740-80]
 gi|121726688|ref|ZP_01679913.1| nitrogen regulation protein [Vibrio cholerae V52]
 gi|147674817|ref|YP_001218235.1| nitrogen regulation protein NR(II) [Vibrio cholerae O395]
 gi|153817427|ref|ZP_01970094.1| nitrogen regulation protein [Vibrio cholerae NCTC 8457]
 gi|153821275|ref|ZP_01973942.1| nitrogen regulation protein [Vibrio cholerae B33]
 gi|227082862|ref|YP_002811413.1| nitrogen regulation protein [Vibrio cholerae M66-2]
 gi|229507206|ref|ZP_04396711.1| nitrogen regulation protein NR(II) [Vibrio cholerae BX 330286]
 gi|229509874|ref|ZP_04399355.1| nitrogen regulation protein NR(II) [Vibrio cholerae B33]
 gi|229516995|ref|ZP_04406441.1| nitrogen regulation protein NR(II) [Vibrio cholerae RC9]
 gi|229606711|ref|YP_002877359.1| nitrogen regulation protein NR(II) [Vibrio cholerae MJ-1236]
 gi|254851285|ref|ZP_05240635.1| nitrogen regulation protein [Vibrio cholerae MO10]
 gi|255743709|ref|ZP_05417668.1| nitrogen regulation protein NR(II) [Vibrio cholera CIRS 101]
 gi|262158595|ref|ZP_06029710.1| nitrogen regulation protein NR(II) [Vibrio cholerae INDRE 91/1]
 gi|262170012|ref|ZP_06037701.1| nitrogen regulation protein NR(II) [Vibrio cholerae RC27]
 gi|9657347|gb|AAF95887.1| nitrogen regulation protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549191|gb|EAX59224.1| nitrogen regulation protein [Vibrio cholerae 2740-80]
 gi|121630849|gb|EAX63231.1| nitrogen regulation protein [Vibrio cholerae V52]
 gi|126512013|gb|EAZ74607.1| nitrogen regulation protein [Vibrio cholerae NCTC 8457]
 gi|126521207|gb|EAZ78430.1| nitrogen regulation protein [Vibrio cholerae B33]
 gi|146316700|gb|ABQ21239.1| nitrogen regulation protein [Vibrio cholerae O395]
 gi|227010750|gb|ACP06962.1| nitrogen regulation protein [Vibrio cholerae M66-2]
 gi|227014634|gb|ACP10844.1| nitrogen regulation protein [Vibrio cholerae O395]
 gi|229346058|gb|EEO11030.1| nitrogen regulation protein NR(II) [Vibrio cholerae RC9]
 gi|229353348|gb|EEO18287.1| nitrogen regulation protein NR(II) [Vibrio cholerae B33]
 gi|229354711|gb|EEO19632.1| nitrogen regulation protein NR(II) [Vibrio cholerae BX 330286]
 gi|229369366|gb|ACQ59789.1| nitrogen regulation protein NR(II) [Vibrio cholerae MJ-1236]
 gi|254846990|gb|EET25404.1| nitrogen regulation protein [Vibrio cholerae MO10]
 gi|255738639|gb|EET94025.1| nitrogen regulation protein NR(II) [Vibrio cholera CIRS 101]
 gi|262021420|gb|EEY40132.1| nitrogen regulation protein NR(II) [Vibrio cholerae RC27]
 gi|262029756|gb|EEY48405.1| nitrogen regulation protein NR(II) [Vibrio cholerae INDRE 91/1]
          Length = 354

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 119 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQA 177

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 178 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDYDPSLPNILMDT 237

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 238 DQIEQALLNIVSNAAQILTNQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 296

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 297 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 349


>gi|313673693|ref|YP_004051804.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940449|gb|ADR19641.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 842

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 74/234 (31%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           +    N   ++ + +L   I HD  + +  I N +EL+       I D  M+    +   
Sbjct: 467 EEAVQNAQRIESIGILAGGIAHDFNNILAGIRNYIELIRITKNLDILDSFMEKTLNALDR 526

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-----EKIDLSRE 114
           A      +         +  ++ + +I   +  F      V+++               +
Sbjct: 527 AKALANQLLTFSKGGDPLIKVVDIKNIINTVATFSLTGSSVKLNIDIEDDLLNCFADEHQ 586

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNE--------------NIFSLKINGNLARF 160
            ++++ NL + A  ++   G++ I  ++ K+                  S+K  G+    
Sbjct: 587 ISQVIENLVINARQAMSDKGELFIKAENYKHHKDVNSNLLIPEGDYIKISIKDTGHGI-P 645

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +I +    +      +       +  ++   +      +    +   L 
Sbjct: 646 EDHLKKIFEPFFTTKKKGKGLGLAICYNIVKKHNGDIEIISELNKGTTVVIYLP 699


>gi|310823304|ref|YP_003955662.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309396376|gb|ADO73835.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1062

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 57/238 (23%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +        + + H+I +P+ AI    +L  + G  +E    I  +S SA
Sbjct: 380 LRQAKESAEEANRAKGEFLANMSHEIRTPMNAIIGMTQLALDAGSPEEKRDFIVKASRSA 439

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVD-----KRVQVSW 104
              L  +     ++             V     +  +  V               V  S 
Sbjct: 440 QSLLGIINDILDFSKIDAGRLEIETVPVSLNELISGLADVFASAAQDKGIELLFDVDASL 499

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160
                       +IL NL   A    P G  V    +     S     FS++  G     
Sbjct: 500 PAALAGDPLRLRQILQNLISNALKFTPAGEVVVRVEKVAELASGVACRFSVRDTGIGIAA 559

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +                       +       L      R+  +            L
Sbjct: 560 EQLPRLFQSFFQTDSSVTRKYGGTGLGLAISKRLVELMGGRIGVDSQPGQGSCFWFEL 617


>gi|311280421|ref|YP_003942652.1| osmosensitive K channel signal transduction histidine kinase
           [Enterobacter cloacae SCF1]
 gi|308749616|gb|ADO49368.1| osmosensitive K channel signal transduction histidine kinase
           [Enterobacter cloacae SCF1]
          Length = 894

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 62/231 (26%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +          +   L + + HD+ +P+  +    E+L               +E+ Q 
Sbjct: 650 EEQARLASERESIRNSLLAALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQANEIRQH 709

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQV-SWTG 106
           +  ++      L   R+  G        + L ++       +          + +     
Sbjct: 710 VLNTTRLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSAIRTLEPGLGGRHIELHLGDPLA 769

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163
                     ++L+NL   A        ++ I+      +    +  NG           
Sbjct: 770 LIHVDGPLFERVLINLLENAVKYAGTKAQIGITATHQDEQLQLDVWDNGPGIPAGKEQSI 829

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   G+ ES I    +       +   +   L      +     +  L 
Sbjct: 830 FDKFARGHKESAIPGVGLGLAICQAIVDVHGGTLSAHNRPEGGASFTVTLP 880


>gi|300814296|ref|ZP_07094568.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511563|gb|EFK38791.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 559

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 67/230 (29%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAI 61
           +   ++ ++ L     S + H++ +P+ +I    ELL       ++   +  +L    + 
Sbjct: 326 DETESIRALRLRDEFSSNVSHELKTPLTSICGFSELLANNMVDSDETKKEFYQLIYRDSK 385

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----------EDFIAVDKRVQVSWTGEKID 110
             L  +      +G       + +   +             +    + + ++   G   +
Sbjct: 386 RLLNLVEDIMKISGLEKEATFVRENINLRELIEEIFNTQKIEIEKRNIKTKLVGQGIVYE 445

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                 ++  NL           G + I +++  ++ I  +  +G      +    F + 
Sbjct: 446 NKTMMWELFSNLVNNGIKYNKDNGNLDILIKEDNDKVIVEVVDSGIGISSDDLERIFERF 505

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +      I    +    V  +       +            +  L K
Sbjct: 506 YRVDKSRSKKIGGTGLGLSIVKHVLSSIDGDVEVSSKMGLGTKFTLSLYK 555


>gi|294643916|ref|ZP_06721704.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294809983|ref|ZP_06768657.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|292640766|gb|EFF58996.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|294442829|gb|EFG11622.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 809

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 56/234 (23%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK I       +L     + + H+I +P+ AI     LL   G ++   +         
Sbjct: 573 LAKQIA---EKAELKQSFLNNMSHEIRTPLNAIVGFTNLLIGEGADEIEPEEKAAMIEIV 629

Query: 61  IIRLKF-------------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
               +                          +  +          + +I+  +     + 
Sbjct: 630 NNNNELLLKLVNDVLEISRLDSGNLSFDIKEHNITKIIKEIYVTYQTLIQPSLCFILELD 689

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF 160
            + +           +++ N    A+     G          +++     +K  G     
Sbjct: 690 ETVSLPVNIDCFRFTQVISNFLNNANKFTKDGTITLGCKIYKEHQEVCVYVKDTGKGIDD 749

Query: 161 PEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E              +    +      ++      R+            S +L
Sbjct: 750 KELMMIFDRFYKTDEFEQGSGLGLSICKVIIERLAGRIEVHSEVGKGSCFSVIL 803


>gi|229514185|ref|ZP_04403646.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA
           21]
 gi|229348165|gb|EEO13123.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TMA
           21]
          Length = 857

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|258517393|ref|YP_003193615.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257781098|gb|ACV64992.1| multi-sensor signal transduction histidine kinase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 612

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 66/212 (31%), Gaps = 12/212 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII----- 62
            L  ++LV  + + I H+I +P+  +   L++           +  +L            
Sbjct: 394 RLDQLNLVGEIAAGIAHEIRNPMTTVRGFLQIFSGKEEYANNKEHFKLMIKELDRANAII 453

Query: 63  -----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                  K   L          + G+  + Q           +++    + +    E  +
Sbjct: 454 TEFLSLAKNKVLNLKMINLSTLIKGIYPLIQGDAARTEKYIHMELQDVPDLLIDEEEIRQ 513

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           ++LNL +    S+  G  + I +   +NE + +++  G+         ++      +   
Sbjct: 514 MMLNLVLNGLQSMSPGQNLFIRLFQEENEVVLAVQDEGHGIPSN-ILDKVGIPFFTTKDH 572

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              +       +A  +   +  +   D     
Sbjct: 573 GTGLGLATCYSIATRHNATISFQSK-DTGTTF 603


>gi|229059565|ref|ZP_04196946.1| hypothetical protein bcere0026_16770 [Bacillus cereus AH603]
 gi|228719769|gb|EEL71364.1| hypothetical protein bcere0026_16770 [Bacillus cereus AH603]
          Length = 334

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL      +    E  V 
Sbjct: 92  MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNQLHSNREECEQYVS 151

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI- 109
            L R S          +         ++    + +++  IE  +                
Sbjct: 152 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPQLDDADMSFCI 211

Query: 110 ---------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++  N+   +      G ++ I V          +K  G     
Sbjct: 212 KGDKVLHVEMDVAVMVRLFENVISNSIMYGKDGKELLIQVSKRDMNVEIEIKNFGQCIPN 271

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     D    V + +L 
Sbjct: 272 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNDKE-TVFTIVLP 329


>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
 gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
          Length = 1325

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 59/214 (27%), Gaps = 19/214 (8%)

Query: 20   SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSM------------SAIIRLKF 66
            + I H+  +P+  I +  E LL    +       ++                    +++ 
Sbjct: 804  ANISHEFRTPLTLIISQTEALLQSPSLSPYFRVRLQRIYRNTFQFRELISELLDFRKMER 863

Query: 67   MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM-- 124
             +L                 E+        +         E+     +R ++   +    
Sbjct: 864  GKLTLHVCQLDVIAFLREMTEEFQNQAQVKNITFSFRADNEEACCWADRRQLRKVISNLL 923

Query: 125  -VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDSHD 180
              A    P GGKV +    ++      +  +G        P  F +    + + +     
Sbjct: 924  SNAFKYTPVGGKVELVAGVTEKGIEIKVIDSGEGIPEESLPCVFDRFYQADTKMSSSGSG 983

Query: 181  IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I       +   +   +  + +  +  + + LL 
Sbjct: 984  IGLALAKGIVELHHGVISVKSVMGYGSIFTVLLP 1017


>gi|261404060|ref|YP_003240301.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261280523|gb|ACX62494.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 359

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 62/214 (28%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           S + H+I SP+ +I      L             +++I             +       G
Sbjct: 137 SNVSHEIQSPLTSIRGFARALRNPRLTEEKRARYLEIIEGEGRRLSQLSDNLLKLSSLEG 196

Query: 76  SVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMV 125
              +                +  +   + KR+QV     ++++        ++  NL   
Sbjct: 197 DQPAFEKARYRLDGQLRAVVLAHEPQWLAKRIQVDLDLAEVEIEATEDLLSQVWTNLLHN 256

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHD 180
           +    P  G +TI ++  ++    ++   G      +    F +    +           
Sbjct: 257 SIKFTPEDGMITIVLKAGEDGAEVTMTDTGVGMSDSDQLHIFERFYKADKSRNRAAGGSG 316

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V  +   ++ R+  +         + ++ 
Sbjct: 317 LGLSIVKRIVDIHQGRITVQSEPGKGSAFTVVVP 350


>gi|153800706|ref|ZP_01955292.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MZO-3]
 gi|124123681|gb|EAY42424.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae
           MZO-3]
          Length = 857

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|21228620|ref|NP_634542.1| sensory transduction histidine kinase [Methanosarcina mazei Go1]
 gi|20907118|gb|AAM32214.1| Sensory transduction histidine kinases [Methanosarcina mazei Go1]
          Length = 702

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 57/245 (23%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L +    A           + + H++ +P+ +I    +LL E        +  
Sbjct: 438 RKKAEEALINAKTAAEAANRTKSEFLTNMSHELKTPLNSIIGFSDLLIEGIAGPLNEKQS 497

Query: 54  RLSSMSAIIRLKFMRLA------------------FGYTGSVDSLIGLGDIEQVIEDFIA 95
           R +   +      + +                     ++ +      +      I     
Sbjct: 498 RYAGFISSNGKNLLNIINGILELSKVESEGDELTLQEFSVNESINKSISTALPQILKKNI 557

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                  S          +  +I+ +L   A    P  G + IS +         +K  G
Sbjct: 558 KLNYNSDSDPLCIFADENKFRQIMESLLNNAVKFTPEDGLIDISSKQEGGIVTIKVKDTG 617

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +   +I    +        T +   +           +   +  E         
Sbjct: 618 IGI-PEDSLDKIFKPFIQLESSLSRTFEGTGLGLTLAKKYVEMHGGNISVESKTGKGSSF 676

Query: 210 SALLE 214
              L 
Sbjct: 677 KVELP 681


>gi|121605276|ref|YP_982605.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
 gi|120594245|gb|ABM37684.1| multi-sensor hybrid histidine kinase [Polaromonas naphthalenivorans
           CJ2]
          Length = 1124

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 57/252 (22%), Gaps = 40/252 (15%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+ +          A L   + H+I +P+  +     LL E  ++ E   +++   +S+ 
Sbjct: 457 ARQVAEEAVRAK-AAFLA-TMSHEIRTPLNGVVGMSTLLAETALDAEQRDILQTIRLSSD 514

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------------------Q 101
             L  +     ++        L      + + I     +                     
Sbjct: 515 QLLAVISDILDFSKIESGRFDLESEPVSVHNMIEEACDIAAPRAREKGIELIVDVPGAAA 574

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKING 155
                  +       +IL+NL   A      G     S      +        FS+   G
Sbjct: 575 GGPPPAILGDVTRLRQILINLVNNAVKFTEHGAVSVHSRLAEAPDEQGLALIEFSVHDTG 634

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                                         +       L      ++          + S
Sbjct: 635 IGIPPERVGALFEAFMQVDASTTRKYGGTGLGLAICKRLVELMGGKISVTSKLGKGSIFS 694

Query: 211 AL-------LEK 215
                    L K
Sbjct: 695 FTVRAALAELPK 706


>gi|121602917|ref|YP_989140.1| sensor histidine kinase/reponse regulator [Bartonella bacilliformis
           KC583]
 gi|120615094|gb|ABM45695.1| sensor histidine kinase/reponse regulator [Bartonella bacilliformis
           KC583]
          Length = 845

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 68/248 (27%), Gaps = 34/248 (13%)

Query: 1   MAKNICF---NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQ 51
           M K        + S  + A+  L   I HD  + + AI  S +LL             + 
Sbjct: 451 MMKQKTLDDDMVQSQKMQAVGQLAGGIAHDFNNVLTAILMSCDLLLNTHRVSDPAHADLT 510

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSW 104
            I+ ++  A   ++ +             +   +    I +            K +    
Sbjct: 511 NIKNNANRAAALVQQLLAFSRKQTLRPEKVDFTEFLSDIRNLILPLLGNHIQLKIIHGRD 570

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIF 149
                        +++NL + A  ++P GG VTI+  +                      
Sbjct: 571 LWSVEVDQASFQCVVMNLVINARDAMPDGGTVTIATNNITKQQSAELNYAGLAAGEYVQL 630

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           ++   G+         ++ +    +        +    V  +  +    +     +    
Sbjct: 631 TVADTGSGISSA-VQEKMFEPFFTTKEIGKGTGLGLSMVYGIIKQTGGYIHCNSQEGEGT 689

Query: 208 VLSALLEK 215
           +    L +
Sbjct: 690 IFHIFLPR 697


>gi|76787305|ref|YP_330515.1| sensor histidine kinase [Streptococcus agalactiae A909]
 gi|77405024|ref|ZP_00782124.1| sensor histidine kinase [Streptococcus agalactiae H36B]
 gi|76562362|gb|ABA44946.1| sensor histidine kinase [Streptococcus agalactiae A909]
 gi|77176318|gb|EAO79087.1| sensor histidine kinase [Streptococcus agalactiae H36B]
          Length = 551

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 72/230 (31%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAII 62
           ++   L    L     + + H++ +P+  I    ELL    + +E + Q        +  
Sbjct: 321 DVTDQLQMEQLQREFTANVSHELKTPLHVISGYSELLANQMVPNEEVPQFAAKIHKESER 380

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117
            +K +      +   +      +   + +    V + +Q     + I ++    +     
Sbjct: 381 LVKLVEDIINLSHLDEQEKLPQETVNLYDLTQKVLEGLQAKADKKHIQINFNGEEAILRG 440

Query: 118 -------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                  ++ NL   A       G+V +++++S +     +   G      +    F + 
Sbjct: 441 NPVLLNSLVYNLCDNAITYNHEKGQVNVTLKNSPDTITLEVSDTGLGIAEKDKKRIFERF 500

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +  +    +    V      +   +  +        ++ LL K
Sbjct: 501 YRVDKSRSKIVGGTGLGLSIVKSALDFHNGSIKVDSHLGQGTTMTVLLHK 550


>gi|116750530|ref|YP_847217.1| sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116699594|gb|ABK18782.1| putative sensor with HAMP domain [Syntrophobacter fumaroxidans
           MPOB]
          Length = 485

 Score =  109 bits (272), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 59/240 (24%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           MA  +        + +   S + H+I +P+ +I  S+ L+ E         +   +Q+  
Sbjct: 244 MAARLA---EEERMRSDFISMLSHEIRTPLTSIRESVNLIVEEVVGEINERQRRFLQIAS 300

Query: 55  LSSMSAIIRLKFMRLA---------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                    L  +                    +    G I +V     A    ++    
Sbjct: 301 DEIQRITSLLNHLMQVSRLEAGAVSIRPRPLDAAEFVAGSIHRVTPAAEAKGISIRTEIA 360

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKV----TISVQDSKNENIFSLKINGNLA 158
                   +   +   L      A    P G  V          S +   FS+  +G   
Sbjct: 361 PGIPRAMGDPENLQQVLLNLLGNAIKFSPPGTDVVVKAEFDPAKSGSNLTFSVSDSGPGI 420

Query: 159 RFPEKFTQIVDGNVESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E           S +    D   +       +   +  R+            S  L 
Sbjct: 421 PDEELTLVFHKYYRASGVRDEVDGVGLGLSISKHIVEAHGGRVWVSSRTGEGCTFSFTLP 480


>gi|329851151|ref|ZP_08265908.1| sensory box protein [Asticcacaulis biprosthecum C19]
 gi|328839997|gb|EGF89569.1| sensory box protein [Asticcacaulis biprosthecum C19]
          Length = 680

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 59/236 (25%), Gaps = 27/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
           AK            +   S + H+I +P+  I     LL    D        +  I  + 
Sbjct: 295 AKRDAEAHQQAK--SDFLSNMSHEIRTPLTTILGYANLLKGVGDLPKDARHYIGRINKAG 352

Query: 58  MSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + +  +  +                 T        + D    + D   +          
Sbjct: 353 EALLSLITDVLDFSKLEAGQVTLDPQPTDLRQLAGDVVDQFMAMTDTRNITIGFDYDDAS 412

Query: 107 EKIDLSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    ++L NL   A       G V +++  S  +    +K +G     PE+ 
Sbjct: 413 PVWLEIDDVRIRQVLYNLIGNACKFT-HDGYVAVTLAVSDGQLRVKVKDSGPGL-TPEQR 470

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +++                   +       +    + R+  E            + 
Sbjct: 471 SRLFTRFNQVDNSINRKYGGSGLGLSICHEIVKLMQGRIGVESEAGQGSTFWFEIP 526


>gi|327462257|gb|EGF08584.1| sensor histidine kinase [Streptococcus sanguinis SK1]
          Length = 344

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +       S     ++ +++ HDI +PI +I  ++E + +       +   +  I   
Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +      ++ + +                       LI +    Q++ +    D  +QVS
Sbjct: 166 TDRLNKLVEELDVLTLNAQPRIESDGEAEIVFLDQLLIEVMSEFQLLIEREERDIYIQVS 225

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               KI    ++ ++IL+NL   A      G K+ I  Q +      S+K  G      +
Sbjct: 226 PESAKIKSHYDKLSRILVNLINNAFKYSDPGTKIEIVAQLTDQILTISVKDEGRGIAPED 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +       LAH+    ++ E         +  L
Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEIMVESQCGLGSTFTFTL 341


>gi|306966787|ref|ZP_07479448.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu009]
 gi|308355484|gb|EFP44335.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu009]
          Length = 485

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L           + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVGMLLSRIESEASRMGLLVDDLLLLARLDAHRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KILLNLFMVAHAS 129
           L  ++ +     A      +           +               ++L NL   A   
Sbjct: 318 LCRVDLLALASDAAHDARAMDPKRRITLEVLDGPGTPEVLGDESRLRQVLRNLVANAIQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ I  +  +G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTEGDDAILEVADDGPGMSQEDALRVFERFYRADSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVDSLVAAHGGAVTVTTALGEGCCFRVSLPR 468


>gi|306802383|ref|ZP_07439051.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu008]
 gi|308350846|gb|EFP39697.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu008]
          Length = 485

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L           + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVGMLLSRIESEASRMGLLVDDLLLLARLDAHRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KILLNLFMVAHAS 129
           L  ++ +     A      +           +               ++L NL   A   
Sbjct: 318 LCRVDLLALASDAAHDARAMDPKRRITLEVLDGPGTPEVLGDESRLRQVLRNLVANAIQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ I  +  +G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTEGDDAILEVADDGPGMSQEDALRVFERFYRADSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVDSLVAAHGGAVTVTTALGEGCCFRVSLPR 468


>gi|296188277|ref|ZP_06856669.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296047403|gb|EFG86845.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 480

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 72/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           +  +I   +   D   +L S I HD+ +PI +I      LLD V    E ++    +  S
Sbjct: 239 LKNSIHMKMKYDDNRRMLVSSISHDLKTPITSIKGYANGLLDGVANTPEKVKHYLKTIYS 298

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------------QV 102
               +  M         +D        E+                              +
Sbjct: 299 KAELIDVMIDDLLLYSKLDLNQIPFKFEKTNIIEYFNYCICESAPELERSNIKIHLKNDL 358

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
           + +   +       +++LN+   +   + +     + + +++ +  +  L+ NG+     
Sbjct: 359 THSKYVMIDRDRLKRVILNIIDNSRKYMDKNNGEIVIMLRETNSSIVIELRDNGHGIDKN 418

Query: 162 E---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +   G+          +       +   +  R+     +D    +   L K
Sbjct: 419 DTNKIFNRFYRGDSARTGASGSGLGLAIAKQIVEGHNGRIWAVSHEDKGTSILISLAK 476


>gi|293394244|ref|ZP_06638544.1| sensor histidine kinase [Serratia odorifera DSM 4582]
 gi|291423222|gb|EFE96451.1| sensor histidine kinase [Serratia odorifera DSM 4582]
          Length = 779

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 63/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++DE ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIED------------FIAVDKRVQVS----WTGEKIDLSRERAKILLNLF 123
            + L +                         +  +        + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTGFLADLENLSGLLAQPKGLQFVLDPQQPLPQQVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNVESTID 177
             A     +G  V    +D + + +F ++ +G      E       + Q+ D        
Sbjct: 408 GNAVKFTQQGQIVVRVRRDGQEKLVFEVEDSGMGIPQDEQDKIFAMYYQVKDQRGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +       H    +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVNSRPGHGSCFTLTIK 504


>gi|255523344|ref|ZP_05390314.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255512998|gb|EET89268.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 453

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 72/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           +  +I   +   D   +L S I HD+ +PI +I      LLD V    E ++    +  S
Sbjct: 212 LKNSIHMKMKYDDNRRMLVSSISHDLKTPITSIKGYANGLLDGVANTPEKVKHYLKTIYS 271

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------------QV 102
               +  M         +D        E+                              +
Sbjct: 272 KAELIDVMIDDLLLYSKLDLNQIPFKFEKTNIIEYFNYCICESAPELERSNIKIHLKNDL 331

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
           + +   +       +++LN+   +   + +     + + +++ +  +  L+ NG+     
Sbjct: 332 THSKYVMIDRDRLKRVILNIIDNSRKYMDKNNGEIVIMLRETNSSIVIELRDNGHGIDKN 391

Query: 162 E---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +   G+          +       +   +  R+     +D    +   L K
Sbjct: 392 DTNKIFNRFYRGDSARTGASGSGLGLAIAKQIVEGHNGRIWAVSHEDKGTSILISLAK 449


>gi|298528785|ref|ZP_07016189.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512437|gb|EFI36339.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1065

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAI 61
           +        M+ + ++   + HD  + +  +  ++E LL +   +   +  ++  S S  
Sbjct: 686 QARLLQAQKMESIGIMAGGVAHDFNNLLQTMSGNIEFLLQDKSADHPDISRLQAISRSIA 745

Query: 62  I-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L   R A      VD    L ++ Q++E  +     +++        ++ +
Sbjct: 746 RSASLVQQLLLAGRKAKFQKVQVDLNEELQEVFQMLERVVPKMIALELHLDPYIEPIAAD 805

Query: 115 R---AKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGN 156
                ++LLNL   A  ++P+G                          N  + S+   G 
Sbjct: 806 PVQIEQVLLNLANNAVDAMPQGGRLAFETNSVVLDEAFVKLHPGVTPGNYVLLSVTDTGC 865

Query: 157 LARFPEKFTQIVDGNVESTIDSHD--IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E    I D    +        +       + + +   +                 
Sbjct: 866 GM-DRETLHHIFDPFFTTKETGKGNGLGLATAYGIINAHGGYIQCYSEPGQGTTFKIFFP 924


>gi|193215941|ref|YP_001997140.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089418|gb|ACF14693.1| integral membrane sensor signal transduction histidine kinase
           [Chloroherpeton thalassium ATCC 35110]
          Length = 500

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 65/237 (27%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-------LLDEVGIEDEV---MQ 51
              +     +  L+    + I HD+ +P+ +I   +E       LL E   +      ++
Sbjct: 249 EHTMNLLKENEKLLREFIANISHDLRTPLASIEGYMETIILKKHLLSEKEKQQYFNTILK 308

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTG 106
             R  +      L   +L             + +     + +      A +  +   +  
Sbjct: 309 NTRTLNRLVNQLLDLSKLEARQVKLKPEPFSITELIQDVMLKFNPQATASNISLNAHFPS 368

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF-SLKINGNLARFPE 162
               +  +     ++L NL   A       G + + ++      ++  ++  G      +
Sbjct: 369 HTPFVFADLGLIDRVLQNLIGNAFNHTEENGCIDVEIEMLDEYTMYVRVQDTGKGIAPED 428

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   G+           +       +   +   L  E         S  L 
Sbjct: 429 LKHIFDRFYQGDKVRSKHKSGAGLGLTIAKKIMELHHSTLDVESTLGVGTTFSFKLP 485


>gi|254285943|ref|ZP_04960905.1| nitrogen regulation protein [Vibrio cholerae AM-19226]
 gi|262191246|ref|ZP_06049443.1| nitrogen regulation protein NR(II) [Vibrio cholerae CT 5369-93]
 gi|150424125|gb|EDN16064.1| nitrogen regulation protein [Vibrio cholerae AM-19226]
 gi|262032880|gb|EEY51421.1| nitrogen regulation protein NR(II) [Vibrio cholerae CT 5369-93]
          Length = 354

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 119 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQA 177

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 178 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDYDPSLPNILMDT 237

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 238 DQIEQALLNIVSNAAQILANQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 296

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 297 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 349


>gi|126735763|ref|ZP_01751508.1| sensor kinase-like protein, putative [Roseobacter sp. CCS2]
 gi|126714950|gb|EBA11816.1| sensor kinase-like protein, putative [Roseobacter sp. CCS2]
          Length = 768

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 69/243 (28%), Gaps = 32/243 (13%)

Query: 3   KNICFN-LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRL 55
           +++    + S  + A+  L   + HD  + + AI    ELL    DE   +   +  I  
Sbjct: 375 RSLELQFVQSQKMQAIGQLAGGVAHDFNNLLTAISGHCELLLCNHDEHDQDYGDLIQIHQ 434

Query: 56  SSMSAIIRLKFMRLAFGYTGSV----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           ++  A   +  +              D    L D+  ++   +     + +    +   +
Sbjct: 435 NTNRAASLVGQLLAFSRKQNLQLETIDLRDTLSDLTHLLNRLVGEKVTLTLDHDPQLDHI 494

Query: 112 SRERAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKI 153
             ++ ++   L      A  ++                +      +   + +  +  +  
Sbjct: 495 KADKRQLEQVLMNLVVNARDAMQGAGEIRVITKNTTLPKAMHRDRATVPAGDYVLVKVID 554

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      EK  +I +    +    +   +       +  +    +  + +       S 
Sbjct: 555 EGQGI-LAEKLGKIFEPFFTTKRPGEGTGLGLSTAYGIVKQTGGYIFVDTVVGEGTTFSL 613

Query: 212 LLE 214
              
Sbjct: 614 FFP 616


>gi|78186714|ref|YP_374757.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
 gi|78166616|gb|ABB23714.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium luteolum DSM
           273]
          Length = 698

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 62/228 (27%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M + +  +   ++LV  L   I HD  + +      +E+L +   E           +  
Sbjct: 324 MQEQLNQS-QKLELVGQLAGGIAHDYNNMLAITLGHVEMLLDQVPESHPFFNGLKAILNS 382

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              S       L F R        V     + +   ++   +                +S
Sbjct: 383 TERSVAITSQLLAFARKQTVQPAVVRLNALVEECLPMLRGAMGESIACVWHPGPAINSIS 442

Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEKFTQI 167
            +     +ILL L + A  ++   G +TI+     +    + ++   G+           
Sbjct: 443 IDPGQFDQILLILCLNARDAIKENGTITINAGEGTTPGYAVLTVSDTGSGINERHLPHIF 502

Query: 168 VDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +     +    V  +  +N   +            +    
Sbjct: 503 EPFFTTKEVGKGTGLGLSTVYGIVKQNHGHVACSSEPGKGTTFTVSFP 550


>gi|116512237|ref|YP_809453.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
 gi|116107891|gb|ABJ73031.1| Signal transduction histidine kinase [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 517

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 59/209 (28%), Gaps = 15/209 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + + H++ +P+ +I    ELL+              +I   S   +  ++   L      
Sbjct: 309 ANVSHELKTPLTSIKGFAELLETDTVSPSETKNFASIIHKESSRLMSLVQDTLLLTKQNQ 368

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------TGEKIDLSRERAKILLNLFMVAHA 128
            ++                +  +  + S                +    I  NL   A  
Sbjct: 369 RIEKKKLSLSALIQNILQSSSPQISEKSLRLETQIEEITFKTNEQMVHSIFENLIENAIK 428

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNL---ARFPEKFTQIVDGNVES-TIDSHDIQFY 184
             P  G++ +S+   +++ IFS+  NG           F +    +     +    +   
Sbjct: 429 YTPAQGQIFVSLHHEQDKIIFSVTDNGPGLSEIEKERIFDRFYRADESRAEVSGTGLGLA 488

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALL 213
            V     E    +    I       +  L
Sbjct: 489 IVEKNVQELHGTIDVVSILGKGTTFTVNL 517


>gi|15840173|ref|NP_335210.1| sensor histidine kinase [Mycobacterium tuberculosis CDC1551]
 gi|148821964|ref|YP_001286718.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis F11]
 gi|215410324|ref|ZP_03419132.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 94_M4241A]
 gi|215426011|ref|ZP_03423930.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T92]
 gi|215429608|ref|ZP_03427527.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis EAS054]
 gi|215444891|ref|ZP_03431643.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T85]
 gi|219556619|ref|ZP_03535695.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T17]
 gi|253797704|ref|YP_003030705.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 1435]
 gi|254231073|ref|ZP_04924400.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis C]
 gi|254363700|ref|ZP_04979746.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis str. Haarlem]
 gi|254549725|ref|ZP_05140172.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260199773|ref|ZP_05767264.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T46]
 gi|289442161|ref|ZP_06431905.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T46]
 gi|289553016|ref|ZP_06442226.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 605]
 gi|289568710|ref|ZP_06448937.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T17]
 gi|289749268|ref|ZP_06508646.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T92]
 gi|289752807|ref|ZP_06512185.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis EAS054]
 gi|289756846|ref|ZP_06516224.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T85]
 gi|297633267|ref|ZP_06951047.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730250|ref|ZP_06959368.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN R506]
 gi|298524248|ref|ZP_07011657.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 94_M4241A]
 gi|306774876|ref|ZP_07413213.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu001]
 gi|306781393|ref|ZP_07419730.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu002]
 gi|306783418|ref|ZP_07421740.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu003]
 gi|306787789|ref|ZP_07426111.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu004]
 gi|306792162|ref|ZP_07430464.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu005]
 gi|306796523|ref|ZP_07434825.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu006]
 gi|306806591|ref|ZP_07443259.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu007]
 gi|306970981|ref|ZP_07483642.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu010]
 gi|307078712|ref|ZP_07487882.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu011]
 gi|313657575|ref|ZP_07814455.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN V2475]
 gi|13880326|gb|AAK45024.1| sensor histidine kinase [Mycobacterium tuberculosis CDC1551]
 gi|124600132|gb|EAY59142.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis C]
 gi|134149214|gb|EBA41259.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis str. Haarlem]
 gi|148720491|gb|ABR05116.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis F11]
 gi|253319207|gb|ACT23810.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 1435]
 gi|289415080|gb|EFD12320.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T46]
 gi|289437648|gb|EFD20141.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 605]
 gi|289542464|gb|EFD46112.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T17]
 gi|289689855|gb|EFD57284.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           T92]
 gi|289693394|gb|EFD60823.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis EAS054]
 gi|289712410|gb|EFD76422.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis T85]
 gi|298494042|gb|EFI29336.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis 94_M4241A]
 gi|308216542|gb|EFO75941.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu001]
 gi|308325842|gb|EFP14693.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu002]
 gi|308331752|gb|EFP20603.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu003]
 gi|308335540|gb|EFP24391.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu004]
 gi|308339308|gb|EFP28159.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu005]
 gi|308343021|gb|EFP31872.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu006]
 gi|308346906|gb|EFP35757.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu007]
 gi|308359437|gb|EFP48288.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu010]
 gi|308363344|gb|EFP52195.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu011]
 gi|323720789|gb|EGB29859.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905020|gb|EGE51953.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           W-148]
 gi|328457483|gb|AEB02906.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           KZN 4207]
          Length = 485

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L           + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVGMLLSRIESEASRMGLLVDDLLLLARLDAHRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KILLNLFMVAHAS 129
           L  ++ +     A      +           +               ++L NL   A   
Sbjct: 318 LCRVDLLALASDAAHDARAMDPKRRITLEVLDGPGTPEVLGDESRLRQVLRNLVANAIQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ I  +  +G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTEGDDAILEVADDGPGMSQEDALRVFERFYRADSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVDSLVAAHGGAVTVTTALGEGCCFRVSLPR 468


>gi|320353635|ref|YP_004194974.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122137|gb|ADW17683.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 1066

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 60/241 (24%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54
           ++       M+ V  L   + HD  + +G I    EL                +++    
Sbjct: 677 RDQLLQAQKMESVGRLAGGVAHDFNNMLGVIIGHAELALTDAGLGTRLRHDLQQILTAAE 736

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            S+      L F R        +D    + ++ +++   I  D ++          +  +
Sbjct: 737 RSAELTRQLLAFARKQPIAPKVLDLNQSITEMLKMLRRLIGEDVQLLWRPGEGLWPVRID 796

Query: 115 RAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGN 156
             ++   L  ++  +                  L      +             +  NG 
Sbjct: 797 PTQLTQILANLSINAKDAVVDDGQIVIETANTVLDAAYCTSRVGCIPGEYVQLMVCDNGC 856

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I D    +        +    V  +  +N   +               L 
Sbjct: 857 GM-DQATQERIFDPFFTTKGHGQGTGLGLSTVSGIVTQNHGLIECASEPGQGTTFRLYLP 915

Query: 215 K 215
           +
Sbjct: 916 R 916


>gi|297158052|gb|ADI07764.1| two-component system sensor kinase [Streptomyces bingchenggensis
           BCW-1]
          Length = 524

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----QLIRL 55
           + K +    +         + + H++ +P+ AI    E+L+E     + M     QL+  
Sbjct: 248 LEKRVEELSAREASSRRFVADMSHELRTPLTAITAVTEVLEEETDALDPMIAPAVQLVVS 307

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +      ++ +     +          D  +       +          +         
Sbjct: 308 ETRRLNDLVENLMEVTRFDAGTARLVLDDVDVADQVTACIDARAWLDAVELDAERGIMAR 367

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQ 166
              R    IL NL   A         V +SV+   ++ +  ++ +G        P  F +
Sbjct: 368 LDPRRLDVILANLIGNALKHGG--SPVRVSVRPEDDDLLIRVRDHGPGIPEDVLPHVFDR 425

Query: 167 IVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +   +     +  AH +   +  +   D   V +  L 
Sbjct: 426 FYKASASRPRSEGSGLGLSIALENAHIHGGEITADNHPDGGAVFTLRLP 474


>gi|284049978|ref|ZP_06380188.1| multi-sensor hybrid histidine kinase [Arthrospira platensis str.
           Paraca]
          Length = 664

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 72/237 (30%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAI 61
                  ++ +  L S I HD+ + +  I  S+++     +   ++++++LI  ++    
Sbjct: 284 QLLRAQRLESIGTLASGIAHDLNNILTPILASVQMFQLGLDQEKQNKMLKLIENNTKRGA 343

Query: 62  IRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115
             +K    F +   G          + ++  +  +       V  + + E   +  +   
Sbjct: 344 NLIKQVLSFAKGFEGKLEIFQVRHLISEVADIARETFPKSINVNTNVSKELWTVYGDPTQ 403

Query: 116 -AKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +IL+NL + A  ++                +               + ++  +G    
Sbjct: 404 LHQILMNLCVNARDAMTDGGNLSLSASNVILNQKEARLNLDAKEGCYVMITVSDSGTGI- 462

Query: 160 FPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I +    +        +    V+ +   +   +  E            + 
Sbjct: 463 TQEVLDRIFEPFFTTKEFAKGSGLGLSTVLGIVKGHNGFIDVETQMGVGTTFRVYIP 519


>gi|288940175|ref|YP_003442415.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
 gi|288895547|gb|ADC61383.1| integral membrane sensor hybrid histidine kinase [Allochromatium
           vinosum DSM 180]
          Length = 778

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H+I +P+  I    ELL E  +        R+   SA 
Sbjct: 259 ARDAAERANRAK--SHFLANMSHEIRTPMNGIIGMTELLQETDLNAAQRDCTRVIQDSAA 316

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105
             ++ +      +      + L  ++    + I                     +     
Sbjct: 317 ALMRIINDILDMSRIEAGRLELERLDFDPRESIERTLEPLREIAQRKGLEFAIELDPELP 376

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFP 161
                      +IL NL   A     +G        +   D     + +++  G      
Sbjct: 377 ARLRGDPGRLRQILTNLVSNAIKFTEQGRVSVTLDCLERTDDWVRFVIAVRDTGIGLSTE 436

Query: 162 E---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E    F +    +V          +       L       +  E       V    L
Sbjct: 437 ECSRLFERFSQADVSTRRRYGGTGLGLAISRQLVELMGGGIDVESKPGLGSVFRVEL 493


>gi|238796208|ref|ZP_04639718.1| Aerobic respiration control sensor protein arcB [Yersinia
           mollaretii ATCC 43969]
 gi|238719901|gb|EEQ11707.1| Aerobic respiration control sensor protein arcB [Yersinia
           mollaretii ATCC 43969]
          Length = 777

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      ++    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTGFMADLENLTGLLVQPKGLKFTMEPELPLPEKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A     +G  V    ++  +   F ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGEIVVRVRREENDRLTFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSAQGSGSCFTLTIK 504


>gi|238785117|ref|ZP_04629112.1| Aerobic respiration control sensor protein arcB [Yersinia
           bercovieri ATCC 43970]
 gi|238714009|gb|EEQ06026.1| Aerobic respiration control sensor protein arcB [Yersinia
           bercovieri ATCC 43970]
          Length = 778

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 59/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      ++    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTGFMADLENLTGLLVQPKGLKFIMEPELPLPEKIITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A     +G  V    ++  +   F ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGKIVVRVRREGNDRLTFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSTQGSGSCFTLTIK 504


>gi|269926245|ref|YP_003322868.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
 gi|269789905|gb|ACZ42046.1| PAS/PAC sensor signal transduction histidine kinase [Thermobaculum
           terrenum ATCC BAA-798]
          Length = 760

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 63/233 (27%), Gaps = 19/233 (8%)

Query: 2   AKNICFNLSSM-DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            +     L  +  + A   + I H++ SPI AI   L+++++         L+ +     
Sbjct: 525 EQEQTRRLRELAQMRADFSAMIAHELNSPIAAIRAVLDVIEQANSNMRHKNLLNVIKREV 584

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGE 107
            +        +  +             V     + D     +  ++    ++V       
Sbjct: 585 DVLASLAGDVYNASEYEKSDFEVSLSPVSLKEIVMDAYIYAQSLLSEYHPIEVVGDTDVL 644

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
            +       +++ NL   A     R   + I     +++    +   G      +     
Sbjct: 645 VLADRERIGQVMRNLLSNAAKYSHRNSPILIRTNILEDKAKLEVVDQGPGIHPDDMDKIF 704

Query: 168 VDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +    +  Y    +   +   L          + S  LE+
Sbjct: 705 RKFGRGRDLLGKKLPGLGLGLYVSRRIIQLHGSDLEVSSQLGKGSIFSFYLER 757


>gi|289583646|ref|YP_003482056.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289533144|gb|ADD07494.1| PAS/PAC sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 792

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 18/229 (7%), Positives = 53/229 (23%), Gaps = 23/229 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
           +     L      A       HD+  P+  + + L+L+++          +E ++     
Sbjct: 561 QRSNKRLEQFAYAA------SHDLQEPLRMVSSYLQLIEQRYADKLDADGEEFLEYAVDG 614

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSWTGEKI 109
           +      +  +          +    +   + + +            D  +         
Sbjct: 615 AERMRAMIDGLLQYSRVESRGEPFEAVDLDDVLADVLNDLRLSIDEHDANITSDLLPTVK 674

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPE---KFT 165
             + +  ++  NL   A               + + +    ++   G      +    F 
Sbjct: 675 GDASQLRQVFQNLIDNALEYSGDDPPRVHVTAERTGDRWQVTVSDEGIGIDPEDADRVFE 734

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +         I       +   +   +  E         S  L 
Sbjct: 735 VFQRLHTRDEHAGTGIGLALCRRIIERHGGEIQVESEPGEGTAFSFTLP 783


>gi|206889477|ref|YP_002248008.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741415|gb|ACI20472.1| alkaline phosphatase synthesis sensor protein PhoR
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 392

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 67/219 (30%), Gaps = 24/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ AI    E L +          + +++I+  +      ++ +     
Sbjct: 167 FVANVSHELKTPVTAIKGYAETLLDGAINDKENSKKFIEIIKNQADRLNALVEDLLTLSR 226

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 ++        + +  +  I +       V  + ++             ++I++N
Sbjct: 227 IEFGDIKIEKENIVLDELISSVFQILKDKAQKKGVLLQKEIPPETAIYADQYRMSQIMIN 286

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A     +G       +++    I  ++  G      E   +I +            
Sbjct: 287 LVDNAIKFTEKGFVKVRFFKENSKGVIS-VEDTGIGI-PKEHIHRIGERFYRVDKARSRQ 344

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +    V  L   +  +L  E   +    +  ++ 
Sbjct: 345 LGGTGLGLAIVKHLVLAHGWQLQIESEVEKGTKVKIVIP 383


>gi|189219148|ref|YP_001939789.1| Signal transduction histidine kinase [Methylacidiphilum infernorum
           V4]
 gi|189186006|gb|ACD83191.1| Signal transduction histidine kinase [Methylacidiphilum infernorum
           V4]
          Length = 485

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 61/205 (29%), Gaps = 9/205 (4%)

Query: 18  LCSRICHDIISPIGAIHNSLE-LLDEVGI-EDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + + + H++ +P+  I   +E  L        E ++ ++         L  + L      
Sbjct: 278 VAATLTHELRNPLATIQLEVENALQSKDKGNKEPLECVQEQVERMKKLLDSIVLLCHAGE 337

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQ------VSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  L    +                   V W G      +  +++L NL   A   
Sbjct: 338 ITPQENDLYPWLKSTVKPYEAAAFKHGVDLRVVPWKGSWCFDPQGMSRVLGNLLQNALEH 397

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            P+GG + + V+   ++   S++ +G      E   ++ +           +    V  +
Sbjct: 398 TPKGGWIEVKVEKKDDKLCISVEDSGKGI-EDEIREEVFEPFFTKKSHGFGLGLSIVKEI 456

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   +  +   +        L 
Sbjct: 457 VESHNACIECKAGREGGARFEIELP 481


>gi|59713543|ref|YP_206318.1| sensor histidine kinase [Vibrio fischeri ES114]
 gi|59481791|gb|AAW87430.1| sensor histidine kinase, GacS/BarA family [Vibrio fischeri ES114]
          Length = 864

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 60/244 (24%), Gaps = 33/244 (13%)

Query: 2   AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            +     +      AL        + + H+I +P+  I    ++L E  +     + +  
Sbjct: 334 QETEYLEIEKSKAEALAKAKSSFLANMSHEIRTPLNGIIGMSDILTETDLTPVQSEYVET 393

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKR 99
              S+   L  +      +      + +   E  +E+                       
Sbjct: 394 IDTSSQTLLLLINDILDLSKIESGNLVIVPQESNVEEVAYDTLTVILSKATEKGLALQVD 453

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155
           +        +       ++L+NL   A      G  +       K        FS+K  G
Sbjct: 454 IANDLPELVMLDEHRLRQVLMNLMSNAVKFTQDGAVILSINYQQKENGRGLLFFSVKDTG 513

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +K  QI +        +        +       L       L  +         
Sbjct: 514 IGI-SKDKCEQIFEPFTQEDSSITRQFGGTGLGLAICRQLVEMLGGELKVDSEKGFGSKF 572

Query: 210 SALL 213
             +L
Sbjct: 573 HFIL 576


>gi|78187217|ref|YP_375260.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
 gi|78167119|gb|ABB24217.1| PAS/PAC sensor signal transduction histidine kinase [Chlorobium
           luteolum DSM 273]
          Length = 896

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 70/238 (29%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57
            K     +  ++ L     S + H++ +P+ +I      L +          ++   +  
Sbjct: 644 RKKHECQIQENIRLKNDFISSVSHELRTPLFSILGFSSTLLKESGSLDPATRLEFTSIIH 703

Query: 58  MSAIIRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             ++     +                    +         +  + +  E+        + 
Sbjct: 704 DESVRLSSLIEDILTISRIDSGKAKYSRQIFDPVKPVSAVVAILRRQAEEKGIELVEEKP 763

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +       ++++NL   A    P+GG+V +S+  ++     ++   G      +
Sbjct: 764 DREHRVVFDQDSLKQVMMNLLGNALKFTPKGGRVKVSISGAEEMVSITVDDTGIGIAASD 823

Query: 163 KFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +I D    S      I+   +    V  +       +  +   D     + LL++
Sbjct: 824 -HEKIFDRFYRSVPSAFQIEGTGLGLAIVKDIVEMQGGSIGVQSELDRGSQFTVLLKR 880


>gi|15607898|ref|NP_215272.1| two component system response sensor kinase membrane associated
           PHOR [Mycobacterium tuberculosis H37Rv]
 gi|148660535|ref|YP_001282058.1| putative two component system response sensor kinase membrane
           associated PhoR [Mycobacterium tuberculosis H37Ra]
 gi|307083273|ref|ZP_07492386.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu012]
 gi|1550636|emb|CAB02401.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE
           ASSOCIATED PHOR [Mycobacterium tuberculosis H37Rv]
 gi|148504687|gb|ABQ72496.1| putative two component system response sensor kinase membrane
           associated PhoR [Mycobacterium tuberculosis H37Ra]
 gi|308367021|gb|EFP55872.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           SUMu012]
          Length = 485

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L           + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVGMLLSRIESEASRMGLLVDDLLLLARLDAHRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KILLNLFMVAHAS 129
           L  ++ +     A      +           +               ++L NL   A   
Sbjct: 318 LCRVDLLALASDAAHDARAMDPKRRITLEVLDGPGTPEVLGDESRLRQVLRNLVANAIQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ I  +  +G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTEGDDAILEVADDGPGMSQEDALRVFERFYRADSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVDSLVAAHGGAVTVTTALGEGCCFRVSLPR 468


>gi|90422066|ref|YP_530436.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90104080|gb|ABD86117.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 1050

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
           A+        M+ +  L   I HD  + +  I  ++++L     +      + +LI  ++
Sbjct: 660 AEQQLRQAQKMESIGQLTGGIAHDFNNMLTVITGTIDILGAAVADRPECATITKLISDAA 719

Query: 58  MSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  + +    R         D    L D++ ++   +     +          +  
Sbjct: 720 DRGAELTRHLLAFARKQPLQPCETDPNTLLSDLQNLLRPTLGEQIEICEVLQDGVWPIFV 779

Query: 114 ERAKI---LLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKING 155
           +R ++   L+NL + A  ++P GG                   +  +     + ++  +G
Sbjct: 780 DRGQLDAALVNLAVNARDAMPDGGTLTLETTNVVLDEDYVRRYAEGEPGPYVMITISDSG 839

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     ++ D    +        +    V     ++   +       H       L
Sbjct: 840 CGI-PEAIRGRVFDPFFTTKEVGKGTGLGLSMVYGFIKQSGGHITLYSEVGHGTTFRIYL 898

Query: 214 EK 215
            +
Sbjct: 899 PR 900


>gi|332527233|ref|ZP_08403301.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2]
 gi|332111653|gb|EGJ11634.1| multi-sensor hybrid histidine kinase [Rubrivivax benzoatilyticus JA2]
          Length = 1233

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 34/246 (13%)

Query: 2    AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIR 54
            A+ +   L  +  L A+  L   I HD  + +  I   L    E L      +  +    
Sbjct: 824  AERLEQRLRDAQKLEAIGTLAGGIAHDFNNMLAGILGRLARAREDLQAGRPAEGHLDEAV 883

Query: 55   LSSMSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             + + A+  ++    F R   G          L D   ++   +    R++     + + 
Sbjct: 884  GAGLRAVALVRQILAFSRGETGQRELQPLEPVLRDTAAMLRAMVPAGVRLETRLPPQPVG 943

Query: 111  LSRERAKILLNLFM---VAHASLPRG-----------------GKVTISVQDSKNENIFS 150
               +  ++   L      A  +LP                     +      +       
Sbjct: 944  AVVDATQLQQVLMNLATNAWHALPPDGGGRIEIGLEPLSAAAAAALQEPALAAGAAAHLW 1003

Query: 151  LKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            ++ NG      E   ++ D    +        +    V  +   +   +  +       V
Sbjct: 1004 VRDNGCGI-PEEIRGRLFDPFFTTKPVGKGTGLGLSVVHGIVAAHGGAIRVDSTPGAGSV 1062

Query: 209  LSALLE 214
                L 
Sbjct: 1063 FHVYLP 1068


>gi|257900010|ref|ZP_05679663.1| histidine kinase [Enterococcus faecium Com15]
 gi|257837922|gb|EEV62996.1| histidine kinase [Enterococcus faecium Com15]
          Length = 286

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           + K+    +  ++    L     S + H+  +P+  I   ++LL      +   +  + +
Sbjct: 50  LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 109

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVS 103
           +I   +  + +    ++L       +                I  +   +      + + 
Sbjct: 110 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 169

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                   + E   ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 170 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQVNGQIHIKLFETATEIVLEVTDSGVGMNEET 229

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 230 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 285


>gi|256371019|ref|YP_003108843.1| histidine kinase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007603|gb|ACU53170.1| histidine kinase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 347

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 65/218 (29%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             + + H++ +P+GAI    E L +        +L++          + +      +   
Sbjct: 124 FVANVSHELKTPVGAIVLLAEALAQEDEPTTAQRLVQRIVDEGDRLARLVSDLLDLSRIE 183

Query: 78  D---------SLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLNLFM-- 124
           +             L +  +   D  A    + +          +  +R ++   L    
Sbjct: 184 EGSGVVLAEFDARSLVEAVRERFDETARRADLTLDALVPVTPTMVVGDRWQLESALSNLV 243

Query: 125 -VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A      GG V IS+  S +  + +++  G      ++  +I +              
Sbjct: 244 DNAIKYSEPGGTVEISLDASDDTIVLAVRDEGIGIPARDR-ERIFERFYRVDAARSRATG 302

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +    V  +   ++ RL    ++         L +
Sbjct: 303 GTGLGLSIVRHVVENHRGRLNVTSMEGVGSTFELRLPR 340


>gi|256376438|ref|YP_003100098.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
 gi|255920741|gb|ACU36252.1| PAS/PAC sensor signal transduction histidine kinase [Actinosynnema
           mirum DSM 43827]
          Length = 549

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 63/232 (27%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++      +  +     + + H++ +P+ A+    E++   G  +             
Sbjct: 312 LEESNRVLAEAAAVKGRFVATVSHELRTPLTAVLAFAEMMPGAGPLNAEHLAHLEVIRRN 371

Query: 61  IIRLKFMRLAFGYTGSVDSLIGL---------------GDIEQVIEDFIAVDKRVQVSWT 105
             RL  +         ++S                           +   ++  V+    
Sbjct: 372 TARLVRLVDDLLLLSRLESHRLPLSLAEVDVAGLLAEAEHDHANPAESAGIELVVEPVDG 431

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
            +    +   +++L N+   A    P GG+V +  Q      + ++   G        P+
Sbjct: 432 PKVRGDAVRLSQVLDNVIGNALKFTPAGGRVRVRSQVDPTGWLITVSDTGIGIPAADLPD 491

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F         + +    +       +   +   +     +     +   L 
Sbjct: 492 LFDVFRRAGNSTGVPGSGLGLSICRQIMALHGGNIRVRAAEGRGTTVELTLP 543


>gi|226310587|ref|YP_002770481.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226093535|dbj|BAH41977.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 461

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/231 (8%), Positives = 56/231 (24%), Gaps = 23/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIR 63
              L+      ++ S I HD  +P+  I      +         ++ + +    +     
Sbjct: 228 ELRLAEERQAEMIAS-IAHDFRTPLTTIKGYASYIGSGRVTDMTKIQKQMGKIELKTTDL 286

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---------------DKRVQVSWTGEK 108
            K +     +T     +    +   V      +                 ++++S     
Sbjct: 287 EKLLDELQDFTTQSSEVRLSINRIHVKSFLRGIIEDYLPRIKEAGLTFQWKLRISNELHI 346

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  +++ NL   A       G + ++    +   +F++   G      +      
Sbjct: 347 EADETKLRRVMENLLNNAIHYNKPDGSIYLTCDQREGHVLFTVIDKGEGIAAEDLTKIFT 406

Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       +   +   L+           S  + 
Sbjct: 407 KFYRAEKSRNRNSGGTGLGLTICKSIVRLHGGDLMVNSELGMGSSFSFTIP 457


>gi|261344485|ref|ZP_05972129.1| nitrogen regulation protein NR [Providencia rustigianii DSM 4541]
 gi|282567393|gb|EFB72928.1| nitrogen regulation protein NR [Providencia rustigianii DSM 4541]
          Length = 349

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 69/231 (29%), Gaps = 22/231 (9%)

Query: 4   NICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     ++  L A  L   + H+I +P+G +  + +LL +   + ++ +  ++    A  
Sbjct: 118 SQELAQNAQQLAARELIRGLAHEIKNPLGGLRGAAQLLSKALPDPQLNEYTQVIIEQADR 177

Query: 63  RLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---EKIDLSRE 114
               +         G          + ++ +++      +  +   +     +      +
Sbjct: 178 LRALVDRLLGPQYPGPKTEQSIHHSVENVVRLVSLEKPENITLIRDYDPSLPDLEYYPDQ 237

Query: 115 RAKILLNLFMVAHAS-----------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             ++LLN+   A  +                +V +  +  +      ++ NG        
Sbjct: 238 VEQVLLNITRNALQALSESGGNITLRTRTAFQVMLQGERYRLAARIDIEDNGPGIPLT-I 296

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V    D   +       L  ++  ++       H    S  L 
Sbjct: 297 QDTLFYPMVSGRPDGTGLGLSIARSLVDQHSGKIEFTSWPGH-TEFSIYLP 346


>gi|220933316|ref|YP_002512215.1| Histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994626|gb|ACL71228.1| Histidine kinase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 615

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 71/236 (30%), Gaps = 26/236 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +NI  +  +M + +   + + H+I +P+ AI    ELL +        +    + +   
Sbjct: 222 RQNIRLS-DAMAVKSRFLATMSHEIRTPLTAITGFAELLLDPRTRVRQREEAIRTILRNG 280

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-----------DFIAVDKRVQVSWTGEK-- 108
             L+ +         +++     +  ++                A +K + +        
Sbjct: 281 NHLQQVVNEILDFSKLEANKLHVEPMEIRPLELIEEVASVLRMQAREKGLTLELEHRFPL 340

Query: 109 ----IDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       +IL NL   A     +   ++ +S   ++      +   G     PE+
Sbjct: 341 PAVIHTDPVRLKQILFNLGNNAVKFTEQGMIRIVVSADPTQQRMRIDVMDTGIGLN-PEQ 399

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++ +        +        +  Y    LA      +  + +  H    S  L
Sbjct: 400 LARLFNPFTQADASITRRFGGTGLGLYLSRELARMLGGDIQVDSVPRHGSRFSLHL 455


>gi|223939410|ref|ZP_03631288.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223891902|gb|EEF58385.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 1436

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 60/238 (25%), Gaps = 29/238 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK      + M   ++  + + H+I +P+ AI     L  +  +  +    I     + 
Sbjct: 692 LAKAKAEEATQMK--SMFLANMSHEIRTPMNAIIGLSHLALKTQLTPKQRDYIGKVHNAG 749

Query: 61  IIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------W 104
                     +  +    G +D  +    +++VI     +  +                 
Sbjct: 750 TSLLAVINDILDFSKIEAGKLDLEVVDFKLDEVITSVTTLTAQKAHEKGLEFLAHVTPGI 809

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLARF 160
               +       +IL N    A     RG              K +  FS++  G     
Sbjct: 810 PEFLLGDPLRLGQILTNFVNNAVKFTERGEIRLNIELIERTGEKLQLKFSVRDTGIGM-T 868

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            E+  ++                   +       L      R+  E            
Sbjct: 869 TEQAAKLFQPFTQADMSTTRKHGGTGLGLTICRRLVELMGGRIWLESEPGAGSTFYFT 926


>gi|163759054|ref|ZP_02166140.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
 gi|162283458|gb|EDQ33743.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Hoeflea phototrophica DFL-43]
          Length = 642

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLI 53
           MA       +S        + + H++ +P+ AI    ++L            + E ++LI
Sbjct: 361 MADEADMANAS---KTRFLAAVSHELRTPLNAILGFSDILAREMFGKFNDERQREYVELI 417

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             S    +  +  M            +     +   + +      R+Q    G  +    
Sbjct: 418 HQSGEHLLALVNTMLDMSKIESGRYEVFVEPFLLSEVVERCDAMLRLQAEQRGVVMTRRM 477

Query: 114 ER------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          +IL+NL   A      GG + +     +   + S+   G      
Sbjct: 478 APGLGEVVADRRAVQQILINLIGNAIKFTEAGGVINVDAGIHEGLLVLSVSDTGIGI-PE 536

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           EK   I    V+         +   +    V  L   +  +      +    V++  L 
Sbjct: 537 EKLALIGQPFVQVQNGLARHFEGTGLGLSLVKGLVDLHGGQFAIASQEGEGTVVTIRLP 595


>gi|163793734|ref|ZP_02187708.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
 gi|159180845|gb|EDP65362.1| hypothetical protein BAL199_11916 [alpha proteobacterium BAL199]
          Length = 1311

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 57/250 (22%), Gaps = 38/250 (15%)

Query: 1   MAKNICFNLSSMDLVA-----------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           M  +  F L ++ L                + + H+I +P+  +     L  +  + +  
Sbjct: 543 MELDREFTLENLALATDQAEKAARAKAEFLANMSHEIRTPMNGVIGLSGLALKSELPEHA 602

Query: 50  MQLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
              +   + S++I                          D    L D+  +I D      
Sbjct: 603 RDYLEKINRSSLILLRIIDDILDFSKIEAGQMSIEATEFDLDDVLQDVATLIADRQEQKP 662

Query: 99  RVQV-----SWTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIF 149
              V           +       +ILLNL   A                   + +     
Sbjct: 663 VEVVFSSEPDLPRTLVGDPHRLGQILLNLIGNALKFTEAGEIVVRISATERLEDQLRLQV 722

Query: 150 SLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
           S+   G      E+  ++                   +       L       +  E   
Sbjct: 723 SVADTGIGM-TDEQMARLFKAFSQADGSTTRRFGGTGLGLAICKQLVELMGGTISVESTP 781

Query: 204 DHNVVLSALL 213
                 S  +
Sbjct: 782 GAGSTFSFTI 791


>gi|149927944|ref|ZP_01916194.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
 gi|149823383|gb|EDM82616.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase, HAMP region:Histidine
           [Limnobacter sp. MED105]
          Length = 755

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 59/249 (23%), Gaps = 36/249 (14%)

Query: 2   AKNICFNLSSMD------LVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQ 51
            KN     + +       L +   + + H+I +P+  I    E++             ++
Sbjct: 245 KKNRALEAAKLKADKSNDLKSQFVANMSHEIRTPLNGILGLTEIILSNSALAEKPRRNLE 304

Query: 52  LIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----- 98
           LI+LS+   +  +                     +    +  + +++    A        
Sbjct: 305 LIQLSAEHLLRVVNDILDFSKIDANCLDMDPQPFELRPNVQAMVKMVSSAYAKPHVATVL 364

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFS 150
            +                ++L NL   A      G                    +  F+
Sbjct: 365 DIDPDVPNYLFGDCPRIMQVLNNLLSNALKFTQHGQVSLTIKTKQGTEKTQKSKSKIHFA 424

Query: 151 LKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
           ++  G       +          +           +       L      R+     +  
Sbjct: 425 VRDTGMGISESARTEIFKAFSQAEPGTARKYGGTGLGLTITQRLLELMNSRIHLWSEEGV 484

Query: 206 NVVLSALLE 214
               S  LE
Sbjct: 485 GSEFSFTLE 493


>gi|149181690|ref|ZP_01860183.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
 gi|148850668|gb|EDL64825.1| two-component sensor histidine kinase [Bacillus sp. SG-1]
          Length = 590

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 68/239 (28%), Gaps = 29/239 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQ 51
           M +          L     + + H++ +PI  +    E +         ++  I   +  
Sbjct: 355 MTEERRL----DKLRKDFIANVSHELRTPIAMLQGYSEAIIDDIAESEEEKKEIAKIIYD 410

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSW---- 104
                       L   R+  G+         +    + + +       +K + +++    
Sbjct: 411 ESLRMGRLVNDLLDLARMEAGHITLKKEKSDISTFLERVTNKFQGIAKEKNIGLNFIGHK 470

Query: 105 ----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
               + +         ++L NL   A    P  G V+++ + +K+  +  +  +G+    
Sbjct: 471 TGLNSQQIYIDPDRIEQVLTNLIDNALRHTPETGSVSVNYKPTKSGILVEVSDSGSGIPE 530

Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F +    +           +       +   +  ++      D     S  L 
Sbjct: 531 EDLPFVFERFYKADKARTRGKSGTGLGLAIAKNIIDSHNGQISVHSKVDQGTTFSFFLP 589


>gi|115377637|ref|ZP_01464832.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
 gi|115365346|gb|EAU64386.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
          Length = 1014

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 16/241 (6%), Positives = 57/241 (23%), Gaps = 28/241 (11%)

Query: 1    MAKN---ICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            M +          ++     +     S   H++ +P+ A    LEL++          + 
Sbjct: 772  MRRESSLQEARAEALKRAVQVRDEFLSIASHELKTPLMAFRLQLELIERSLGPESRLSLA 831

Query: 51   QLIRLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
              + ++                     +  + L        + +    +  +   +    
Sbjct: 832  SRLSVAGRQVQRLNTLVETLLDVSQLSMGRLMLHLEEVDLAEVVGETVEQLRGSLERAGC 891

Query: 97   DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
               V+V              ++++NL   A            + ++       ++   G 
Sbjct: 892  SLTVEVERPLVGRYDRVRFERVVMNLLDNALKYGEGKPLRVRAWKEQGIS-RLTVADQGM 950

Query: 157  LARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +    F +              +  +    +   +   +  +         +  +
Sbjct: 951  GISPEDQARIFERFERAVPGRQYGGLGLGLWIARQVVEAHGGHIQVDSTPGQGTTFTVQI 1010

Query: 214  E 214
             
Sbjct: 1011 P 1011



 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 60/237 (25%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
                 +  L  L        S + H+  +P+  +   LE +L    + +   + + +  
Sbjct: 354 EEERKRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLASGTLPEAAARELDVVH 413

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRV----QV 102
            +A   L+ +     ++             VD      D+                    
Sbjct: 414 RNATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCP 473

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         KI+LNL   A     +G         +       +   G      +
Sbjct: 474 PLPAPFYVDREMWEKIVLNLLSNAFKFTFQGTITVRLRARTGQ-AWLEILDTGTGIPPED 532

Query: 163 K---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +     G    T +   I    V  LA      +  E ++      + +L 
Sbjct: 533 LPHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVESVEGQGSCFTVVLP 589


>gi|71281799|ref|YP_269191.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
 gi|71147539|gb|AAZ28012.1| sensor histidine kinase/response regulator [Colwellia
           psychrerythraea 34H]
          Length = 784

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    +   + + H+I +P+  +   ++LL    + D     +++   S 
Sbjct: 278 LQQAKEIAEEANKAKSQFLATMSHEIRTPMNGMLGMIQLLQNNELTDPQSHRVKILHDST 337

Query: 61  IIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              L+       +    +               L ++  +++             T    
Sbjct: 338 EALLETFDHVLQFAQLEEGGYVCSESFFSLDELLHNLISLMQPKADEKHLQLKLDTPVTG 397

Query: 110 DLSRER----AKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARF- 160
           D   +      +IL NL   A     +G        +   + ++   FS++ +G      
Sbjct: 398 DCYHDAAGSLRQILTNLLANAIKFTDQGEILLRVSHLEQSEHQHRLRFSIQDSGIGIEPA 457

Query: 161 --PEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                F +    +  +        +       L+ E   ++  E           
Sbjct: 458 LQQHIFERFTQADESITRRFGGTGLGLSICRQLSQEMGGQIGVESTVGQGSTFWV 512


>gi|84499380|ref|ZP_00997668.1| C4-dicarboxylate transport sensor protein [Oceanicola batsensis
           HTCC2597]
 gi|84392524|gb|EAQ04735.1| C4-dicarboxylate transport sensor protein [Oceanicola batsensis
           HTCC2597]
          Length = 589

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 67/235 (28%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE---LLDEVGIEDEVM----- 50
           + +     + +  L AL  + + + H++  P+ AI    E   LL + G  D+       
Sbjct: 349 LKRAQAELVQAGKLSALGQMSAGLSHELNQPLMAIRQFAENGSLLVDRGRTDQAAQNLVR 408

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
              L             F R        VD +  +    ++ E  +A +         E+
Sbjct: 409 IGDLAGRMGRIIRNLRAFARQESEPARRVDLVQVVSTALEMTEARLAKEGIALTWKPPER 468

Query: 109 IDL----SRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEK 163
                       ++L+NL   A  ++    +             +  +   G     PE 
Sbjct: 469 PVAALAGEVRLVQVLVNLITNAADAMSGRARRELTIEIAVGPRPVIRVSDTGPGIAQPE- 527

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D    +      +   +       L       +      +   V S  LE
Sbjct: 528 --RIFDPFYSTKEVGASEGMGLGLSISYGLVQSFGGAIRGRNRPEGGAVFSVELE 580


>gi|114319827|ref|YP_741510.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226221|gb|ABI56020.1| periplasmic sensor signal transduction histidine kinase
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 917

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 58/232 (25%), Gaps = 25/232 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLS 56
           +     L  +D L     S + H++ +P+ +I    E+L      +     E +Q++   
Sbjct: 667 RRANERLKELDHLKDEFVSMVSHELRTPLTSIRAFGEILLSNPELDAEQRKEFLQVVVKE 726

Query: 57  SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGD----IEQVIEDFIAVDKRVQVSW 104
           S      +             A  +  ++D    + +      Q+  D     +      
Sbjct: 727 SERLTRLINQVLDLSKIESGAAEWHLETLDLNQVVQEAADATRQIFHDTRVDLQVKAPEQ 786

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPE 162
                       ++++NL   A                     +    ++ NG      E
Sbjct: 787 PTIITGDHDRLIQLVINLLSNAAKFTDPDNGRVEVSVVPVSARKLELRVQDNGPGISEAE 846

Query: 163 KFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           +       +              +      L+   +   +  E         
Sbjct: 847 QRKIFDKFHQVSSQQAGKPKGSGLGLAICKLIMDAHSGDIRVESEPGAGATF 898


>gi|323163950|gb|EFZ49759.1| sensor kdpD domain protein [Shigella sonnei 53G]
          Length = 566

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 321 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 379

Query: 54  RLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 380 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 439

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 440 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHFEGENLQLDVWDNGPGLPPGQEQ 499

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 500 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 552


>gi|307326290|ref|ZP_07605486.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
 gi|306887953|gb|EFN18943.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces violaceusniger Tu 4113]
          Length = 488

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 60/212 (28%), Gaps = 14/212 (6%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ---------LIRLSSMSAIIRLKFMR 68
           L +   H++ +P+ A+  + ELL          +          +R  +      ++  R
Sbjct: 267 LVADASHELRTPLTALRTNAELLARADRLSPAQRDRAASALGGQLREVTGLVNDLIELAR 326

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--TGEKIDLSRERAKILLNLFMVA 126
                       + L     V E           +         +    A++L NL   A
Sbjct: 327 DEEPLPLVEPVRLDLLAARCVEEARSHWAHTAFTAELAEVTVDGVPARLARLLTNLLDNA 386

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQF 183
               P G +V + +   +     +++ +G      +    F +         +    +  
Sbjct: 387 AKFSPPGAEVEVRLTSGEPAIDLTVRDHGPGIAAEDLPYVFDRFYRSRQARALPGSGLGL 446

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +A  +   L  E  D    +    + +
Sbjct: 447 AMARQIARAHGSALSAEAADGGGALFRLRIPR 478


>gi|298248599|ref|ZP_06972404.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
 gi|297551258|gb|EFH85124.1| histidine kinase [Ktedonobacter racemifer DSM 44963]
          Length = 388

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 67/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL-----------------ELLD 41
           + +     + +  L  L  L + + H++ +P+ +I   +                 +LL 
Sbjct: 142 LLEKQEQLVQAGKLATLGELTTGVAHELNNPLNSIGLFVGNTIDMIRLGMAETETQQLLQ 201

Query: 42  EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           E+    + +              +              + G   + Q       ++  V 
Sbjct: 202 ELDNAMQQVHKATSIISHLRTFGRVASARHEPMILEPVVRGALMLLQEQLRLRQIEVHVD 261

Query: 102 V-SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLA 158
             S   + +  S +  ++ +NL   A  ++       ++      K+     +   G   
Sbjct: 262 FPSEEVKVLGSSIQLEQVFINLLTNARDAMASSRDKRMTISCAMQKSMVELHVSDTGTGI 321

Query: 159 RFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE   +I D    +        +       +  +++  +  +       V    L 
Sbjct: 322 -LPELEKRIFDPFFTTKEVGLGTGLGLSITYGIIQDHRGTIELKNHPGEGAVFIIRLP 378


>gi|229526834|ref|ZP_04416238.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae bv.
           albensis VL426]
 gi|229336992|gb|EEO02010.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae bv.
           albensis VL426]
          Length = 497

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIR 54
           A     N+ +          L + + HD+ +P+GAI  S   L +  +    +   +L+ 
Sbjct: 253 AHRTLANVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLT 312

Query: 55  LSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             +       + +                    V+    +G +   +   +   K    S
Sbjct: 313 SIAEQGERLNRSLTKLLDITRYTASALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIES 372

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S    ++L+NL   A    PRG ++ I+      +   ++  NG      E 
Sbjct: 373 QPMLVELDSLLIEQVLINLVENAAKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PDEA 431

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D       +  D   +      ++   ++  +     +      +  + 
Sbjct: 432 LPRIFDRFYRVEGNHADGTGLGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|229143069|ref|ZP_04271503.1| hypothetical protein bcere0012_2440 [Bacillus cereus BDRD-ST24]
 gi|228640398|gb|EEK96794.1| hypothetical protein bcere0012_2440 [Bacillus cereus BDRD-ST24]
          Length = 225

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 58/219 (26%), Gaps = 22/219 (10%)

Query: 19  CSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
            S I HDI +P+ +I   ++ L +     E E  + +++  M +      +   F     
Sbjct: 1   MSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYMKSNNLKHLVDEIFNMAKL 60

Query: 77  ---------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                            +   L +    +       +      T   I       +I+ N
Sbjct: 61  DANEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQIRIPESTCPIIADHLSIMRIIGN 120

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   A      G  + + + ++  E    +   G      +    F ++           
Sbjct: 121 LMKNAIYYGKDGKTIGVELLEADAEYELHIWDQGPGIPKHDLQNVFERMYRSEQSRNSSF 180

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +       L  +N   +  E            + K
Sbjct: 181 GGSGLGLSISKALVEKNGGHIWVESTPWKRTTFGFSIPK 219


>gi|307153865|ref|YP_003889249.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
 gi|306984093|gb|ADN15974.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
            7822]
          Length = 1153

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 73/243 (30%), Gaps = 29/243 (11%)

Query: 2    AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQ 51
             + +   L+       L       I H+  +P+ AI  S E ++  G +      ++ ++
Sbjct: 903  EQQLEIALAQEKELHKLKIQFIDLISHEFRTPLTAILGSAEFVERHGEQLKAEKKEKHLR 962

Query: 52   LIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             I L+       +                    +D +    ++ + I+   A +  +++ 
Sbjct: 963  NILLAGRRLNELVDDVLSISRAESGKLEFNPTPLDFVEFCQNLIEEIQFGFAKNHHIELL 1022

Query: 104  WTGEKIDLSRERA--------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
              G   +               IL+NL   A         + +S+   + + IF +   G
Sbjct: 1023 LKGFVPEKDCNICYLDEKCLRHILINLLSNATKYSAVDSLIQLSLDCQEQQIIFQISDQG 1082

Query: 156  NLARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  +    F      N   TI    +    V      +K ++     +      +  
Sbjct: 1083 IGIPLEDQSLLFEPFYRANNVHTIPGTGLGLKIVQTYVTLHKGKVEFISEEGEGTTFTVT 1142

Query: 213  LEK 215
            L +
Sbjct: 1143 LPR 1145


>gi|189192132|ref|XP_001932405.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187974011|gb|EDU41510.1| autoinducer 2 sensor kinase/phosphatase luxQ [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 389

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 68/237 (28%), Gaps = 28/237 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           N+     +    +L  + + H++ +P+  +    ELL    +  E         + A   
Sbjct: 26  NMKLKEEAARAKSLFLANVSHELRTPLNGVIGMSELLKASPLNGEQTGYADSIRVCADTL 85

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGE 107
           L  +     Y+      + + ++   + + IA                  ++++++    
Sbjct: 86  LSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELNPEML 145

Query: 108 KIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +       +IL+NL   ++   PR       V     D   +   S+   G      E+
Sbjct: 146 VMADPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGI-PDEQ 204

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
             ++             +     +       L        +  E        ++  L
Sbjct: 205 KQKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTVTFSL 261


>gi|171059132|ref|YP_001791481.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
 gi|170776577|gb|ACB34716.1| multi-sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
          Length = 846

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 55/223 (24%), Gaps = 28/223 (12%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H+I +P+ AI     LL    ++ +    I     +A   L  +      +     
Sbjct: 254 ANMSHEIRTPLNAILGLARLLRRSTLDAQQADRIAKIDDAAHHLLGLISDVLDLSKVEAG 313

Query: 80  LIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFM 124
              L   +             V     A    +Q+      + L  +     + LLN   
Sbjct: 314 RQALDADDFELGALMAQVGNAVAHQAAAKGLALQIQAPPAPLWLRGDAGRLRQALLNYMA 373

Query: 125 VAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
            A    P G        +          F ++ +G     PE   ++ +           
Sbjct: 374 NAVKFTPTGWVRFDVQCEAAGERAVRLHFDVRDSGIGI-APEHLPRLFNDFEQGDKSTTR 432

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLEK 215
                 +       L       +  +              L +
Sbjct: 433 RFGGTGLGLAVTRSLVELMGGSVGVDSAPGQGSRFWLHVTLPR 475


>gi|108761720|ref|YP_631245.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108465600|gb|ABF90785.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 514

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNS----------LELLDEVGIEDE 48
           M+           L A+  + + + H++ +P+ A   +          L++         
Sbjct: 272 MSSYREQAARVEKLAAVGRMTATVSHELRNPLAAARTANAVVVRHLRKLDVTLADQRLQR 331

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE- 107
            +++I             +               L  + + + D +   + V++  +   
Sbjct: 332 FLEIIERELAVCSRISSELLDFARERPLELRPCSLHALMEEVLDVVPGREGVRIQNSVPL 391

Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARF 160
                        K+L+NL   A  ++P G    + V          I  +  NG     
Sbjct: 392 SLASPWVDRELLRKVLINLVQNAVEAMPAGRLGRVDVFAEGGNGSAFIIRVSDNGMGI-P 450

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +I +    +      +    V     ++   L  E  +    V +  L 
Sbjct: 451 EAMQERIFEPLFTTKPAGTGLGLSVVASTVRQHGGTLRVESREGEGSVFTLCLP 504


>gi|117919861|ref|YP_869053.1| ATPase domain-containing protein [Shewanella sp. ANA-3]
 gi|117612193|gb|ABK47647.1| ATP-binding region, ATPase domain protein domain protein
           [Shewanella sp. ANA-3]
          Length = 603

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 66/231 (28%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + +  L  +  L + I H++  P+ A+ +  +               + +++
Sbjct: 363 LKDTQDELIQAAKLTVIGSLSASINHELNQPLAALRSYAQNTQTFLARNMPDKASDNLKI 422

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ--------VSW 104
           I   +      +   +     +   DS   L    +     +  +   Q           
Sbjct: 423 IIELTDRLADIVGQFKSFTRKSQGTDSATDLKGCIKQALTIVQPEIDKQGVELDVLLPEG 482

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEK 163
             +         ++ +N+   A  ++ +  K T     +  ++   S++ +G   R  + 
Sbjct: 483 QYQVWGDKVRLQQVFVNIMSNAIVAMQQSSKRTLSIRVNCADKFCISIQDSGPGVRESQM 542

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S      +       +    + ++     +D   +   +L 
Sbjct: 543 EKIFEPYFTTSERTGLGLGLSISQRIIESMQGQINVANAEDGGAIFHIILP 593


>gi|163845836|ref|YP_001633880.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222523547|ref|YP_002568017.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163667125|gb|ABY33491.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222447426|gb|ACM51692.1| PAS/PAC sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 642

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 57/235 (24%), Gaps = 31/235 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM--------S 59
            S  L A+  L S I HD+ + +  I    E+       D  +                 
Sbjct: 269 QSQKLEAIGALTSGIAHDLNNLLVPIIGFAEMGMLEVTPDNPLYSDFDQIRAAGIRATAL 328

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L F R        +     + D   ++   I     +Q+    +   +  + ++I 
Sbjct: 329 TRRILTFSRQQRMEMKPIHISRVISDFVAILRRIIGERIDIQLQLASDLPPVQADVSQIE 388

Query: 120 LNLFMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             L  +   +                           +     +     +   G      
Sbjct: 389 QILLNLVINARDAIEGNGTITITTAFVSPEDTDFPWPADVPPGDYIALQISDTGCGIDSA 448

Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++I +    +        +    V  +  ++   +  + +       +  L 
Sbjct: 449 -IRSRIFEPFFTTKPSGKGTGLGLATVAAIVKQHHGYIDVQSLPGQGATFTVYLP 502


>gi|330503188|ref|YP_004380057.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
 gi|328917474|gb|AEB58305.1| putative sensory box histidine kinase/response regulator
           [Pseudomonas mendocina NK-01]
          Length = 1230

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 57/217 (26%), Gaps = 24/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H+I +P+ AI    +LL E  +  +  + +     S+   L  +            
Sbjct: 662 ANMSHEIRTPMNAIIGFTDLLLETPLSPDQRRHLSTVQHSSRSLLGLLNDILDTAKLDRG 721

Query: 80  L----------IGLGDIEQVIEDFIAVDKRVQVSWTG------EKIDLSRERAKILLNLF 123
                        L +     +   A  K +Q+                    ++L NL 
Sbjct: 722 AIELEQLDFSLRELCEQVVATQRLTAESKGLQLHLDYPSTVGDFFSGDPLRLQQVLTNLL 781

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTID 177
             A     +G        +       ++K  G      ++  +I +        +     
Sbjct: 782 GNAVKFTQQGEVRLKVSGEPGAM-RLAVKDTGIGI-AADRLEKIFEPFAQADASMSRRFG 839

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L      RL  E  +      S  L 
Sbjct: 840 GTGLGTTISRQLVELMGGRLKVESTEGQGSCFSVELP 876


>gi|260769147|ref|ZP_05878080.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP
           102972]
 gi|260614485|gb|EEX39671.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio furnissii CIP
           102972]
          Length = 834

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 61/241 (25%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  I    +LL     E E  + + +   
Sbjct: 441 KQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKRTVTEKEQAEQVNVLCS 500

Query: 59  SAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDK-----RVQV 102
           S    L  +     ++                +  +  IE++                 +
Sbjct: 501 SGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVSAIERIYRPLCREKGLTLTLNTNI 560

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLAR 159
                         +IL NL   +           ++ +   ++  +   ++   G   R
Sbjct: 561 GDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQLHLLETEAGAKLEITVLDTGIGIR 620

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +                 +    V  L       +  +         +  L
Sbjct: 621 EQDL-ALIFEPFVQAESTNTREYGGSGLGLAIVHSLIEMLGGSIEVKSSFGVGTRFTIEL 679

Query: 214 E 214
            
Sbjct: 680 P 680


>gi|254503265|ref|ZP_05115416.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439336|gb|EEE46015.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 390

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------Q 51
           MA+ I   L+S         L + + H+I +P+  I  + +LL++   +++         
Sbjct: 137 MAEKIDRQLTSRGAARTVTGLAAMLAHEIKNPLSGIRGAAQLLEQSAPDEDRALTRLITD 196

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                         F          V+  + L  ++++ +   A D R+  ++      +
Sbjct: 197 ETDRIVKLVDRMEVFSDERPIERDPVNIHVVLDHVKRLSDSGFARDNRITENYDPSLPPV 256

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------------------ENIFSLK 152
              + +++     +   +    G                                 F ++
Sbjct: 257 YANKDQLIQVFLNLIKNASEAIGDDPDGEIRVSTAFRPGVRLSVPGTEDKVSLPLEFCVQ 316

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG      +    + +  + +  +   +    V  +  ++   +  +       V   L
Sbjct: 317 DNGPGV-PEDLLPHLFEPFITTKTNGSGLGLALVAKIIGDHGGVIECDSQRGK-TVFRIL 374

Query: 213 LE 214
           + 
Sbjct: 375 MP 376


>gi|182412671|ref|YP_001817737.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839885|gb|ACB74137.1| PAS/PAC sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 518

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 62/240 (25%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS--- 59
           +        ++ V  L   + HD  + +  I+   E+L     +                
Sbjct: 141 QESLVQTQRLEAVGRLAGGVAHDFNNLLSVINGYCEMLAAQVSDRPQALREVSEIHRAGL 200

Query: 60  -----AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        ++    + +  Q++   I    ++++        +  +
Sbjct: 201 RAAGLTRQLLAFGRRQPMDPRVINLNRLVQEHAQIMSRLIGNAGQLELELAENIGRVRAD 260

Query: 115 ---RAKILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKINGN 156
                ++LLNL + A  +L   G                   S          ++  NG 
Sbjct: 261 PSQFQQVLLNLVINARDALRDRGRITISTSNREIKPGLNRRSSDTPPGRYVCLTVTDNGT 320

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E    + +    +  +     +    V  +  ++   +              LL 
Sbjct: 321 GI-DAETQKHLFEPFFTTKPEGKGTGLGLALVYGVVQQSGGTIQVRSALLAGSTFEILLP 379


>gi|197119050|ref|YP_002139477.1| HAMP domain-containing sensor histidine kinase [Geobacter
           bemidjiensis Bem]
 gi|197088410|gb|ACH39681.1| sensor histidine kinase, HAMP domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 452

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLK----------- 65
             S   H++ +P+ AI +  E+ L +    D + ++I      A    K           
Sbjct: 232 FTSDASHELRTPLTAIRSVGEVGLRKGLDADALREVISSMLEEADRLTKLVDSLLTLSRA 291

Query: 66  ---FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
               ++L    T  V  +  + +  +V+ +    +  +  S             + L+N+
Sbjct: 292 ESGTLKLRPEPTNLVALVSEVIECLEVLAEEKEQNIALMASQEAVADIDRGTIRQALMNV 351

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTID 177
              A    P+G ++++ V+ S  E    +   G           F +           + 
Sbjct: 352 LDNAIKYSPQGSRISVCVEVSAGEATVEVSDGGPGIAPEHAKKVFDRFYRIDSGRSREVG 411

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           N  R+  E       +   +L 
Sbjct: 412 GTGLGLAIARWAVEVNGGRIELESEPGKGSIFRIVLP 448


>gi|126009878|gb|ABN64196.1| RcsC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 951

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +  +  +L+   
Sbjct: 451 MEESLQEMANAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKSLPQDANRLVLAM 510

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I+                    +
Sbjct: 511 NNSSSLLLKIISDILDFSKIESEQLKIEPCEFAPHEVISHITSNYLPLVVKKRLMLYCFI 570

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + +             ++L NL   A       G +   V        F ++  G   + 
Sbjct: 571 EPNVPVSLFGDPVRLQQVLSNLLSNAIKFTDT-GCIVFEVGCRDGYLEFVVRDTGVGIQP 629

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +  E       +    + 
Sbjct: 630 REAVKLFDPFFQAGSGVQRHFQGTGLGLAICEKLVNLMDGDITIESEPGLGSLFGVRIP 688


>gi|88858789|ref|ZP_01133430.1| putative sensor protein [Pseudoalteromonas tunicata D2]
 gi|88819015|gb|EAR28829.1| putative sensor protein [Pseudoalteromonas tunicata D2]
          Length = 1027

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 68/253 (26%), Gaps = 42/253 (16%)

Query: 1   MAKNICFNL----SSMDLVALLC-----------SRICHDIISPIGAIHNSLELLDEVGI 45
           M +++   +      +     L            + I H+I +P+  I   +ELL    +
Sbjct: 491 MNQSLELQVAERTQELKHATELAIAANQSKSAFVANISHEIRTPLNGIAGMMELLQREDL 550

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL----------GDIEQVIEDFIA 95
            D+ +  ++++  S       +      +      + +                      
Sbjct: 551 SDKQLNYLKMAKSSVSTLTVLINDLLDLSKIESGKLDIELVQFNLIETMSSVINSMALRC 610

Query: 96  VDKRVQVSWTGEKIDLS------RERAKILLNLFMVAHASLPRGGK----VTISVQDSKN 145
            +K +++ +   +I             ++L+NL   A     +G       T +    + 
Sbjct: 611 DEKGLELLFDWTQIQHEELISDAYRIKQVLVNLIGNAIKFTAQGQIVVSAKTYAAAQEQI 670

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLP 199
                +   G     PE+  ++     ++            +       L       +  
Sbjct: 671 WLEVVITDTGIGL-TPEQQAKLFRPFTQAHANIAKNFGGTGLGLSISQQLVQLLGGEITI 729

Query: 200 EIIDDHNVVLSAL 212
             + +     +  
Sbjct: 730 HSVVEQGSTFTFT 742


>gi|324992961|gb|EGC24881.1| sensor histidine kinase [Streptococcus sanguinis SK405]
 gi|324995731|gb|EGC27643.1| sensor histidine kinase [Streptococcus sanguinis SK678]
          Length = 344

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 76/236 (32%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +       S     ++ +++ HDI +PI +I  ++E + +       +   +  I   
Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +      ++ + +                       LI +    Q++ +    D  +QVS
Sbjct: 166 TERLNKLVEELDILTLNAQPQIESDGEAEIVFLDQLLIEVMSEFQLLIEREERDIYIQVS 225

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               KI    ++ ++IL+NL   A      G K+ I  Q +       +K  G       
Sbjct: 226 PESAKIKSHYDKLSRILVNLINNAFKYSDPGTKIEIVAQLTDQILTICVKDEGRGISPEN 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +       LAH+    ++ E         +  L
Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEIMVESQCGLGSTFTFTL 341


>gi|317052125|ref|YP_004113241.1| ATPase ATP-binding domain-containing protein [Desulfurispirillum
           indicum S5]
 gi|316947209|gb|ADU66685.1| ATP-binding region ATPase domain protein [Desulfurispirillum
           indicum S5]
          Length = 717

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/213 (9%), Positives = 60/213 (28%), Gaps = 17/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL------------- 64
           +  RI H+I +P+  I  + E L +     +  +  ++   S    +             
Sbjct: 494 VAKRIAHEIRNPLTPIKLNAERLLKKYDTMDPGEFHQVLERSCGAIIDQVDTLRMLVDEF 553

Query: 65  -KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKILLN 121
            ++ R+          +  +    ++  +                  +    + +++++N
Sbjct: 554 SQYARMPRASRKPESIVPIVERSIELYRNSHPAMTFKLTIHGEIPLLMLDKEQVSRVMVN 613

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
           L   A  +    G+V I ++  K      +  +G          +I      +      +
Sbjct: 614 LLENAVFATADNGQVDILIERRKYAVELKVCDSGGGIPEG-VAEKIFSPTFSTNPKGSGL 672

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +  ++   +            +    
Sbjct: 673 GLAIVQRIVEDHSGVISVSNEPQGGACFTIEFP 705


>gi|229043768|ref|ZP_04191468.1| hypothetical protein bcere0027_18130 [Bacillus cereus AH676]
 gi|228725569|gb|EEL76826.1| hypothetical protein bcere0027_18130 [Bacillus cereus AH676]
          Length = 443

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 281

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 282 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 341

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 342 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 401

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 402 NHAAGAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442


>gi|229109466|ref|ZP_04239058.1| hypothetical protein bcere0018_17320 [Bacillus cereus Rock1-15]
 gi|228673963|gb|EEL29215.1| hypothetical protein bcere0018_17320 [Bacillus cereus Rock1-15]
          Length = 443

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 281

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 282 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 341

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 342 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 401

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 402 NHAAGAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442


>gi|229110643|ref|ZP_04240208.1| hypothetical protein bcere0018_28940 [Bacillus cereus Rock1-15]
 gi|228672816|gb|EEL28095.1| hypothetical protein bcere0018_28940 [Bacillus cereus Rock1-15]
          Length = 436

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMLQEASIDITTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|228939140|ref|ZP_04101734.1| hypothetical protein bthur0008_18010 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228972018|ref|ZP_04132635.1| hypothetical protein bthur0003_17950 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|229150235|ref|ZP_04278456.1| hypothetical protein bcere0011_17890 [Bacillus cereus m1550]
 gi|228633207|gb|EEK89815.1| hypothetical protein bcere0011_17890 [Bacillus cereus m1550]
 gi|228787677|gb|EEM35639.1| hypothetical protein bthur0003_17950 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228820509|gb|EEM66540.1| hypothetical protein bthur0008_18010 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 443

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 281

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 282 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 341

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 342 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 401

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 402 NHAAGAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442


>gi|229178406|ref|ZP_04305774.1| hypothetical protein bcere0005_17670 [Bacillus cereus 172560W]
 gi|228605044|gb|EEK62497.1| hypothetical protein bcere0005_17670 [Bacillus cereus 172560W]
          Length = 443

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 222 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDYLTEEEIKQGMGIISGETDRLIHLV 281

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 282 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 341

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 342 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 401

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 402 NHAAGAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 442


>gi|326939717|gb|AEA15613.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 452

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 231 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 290

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 291 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 350

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 351 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 410

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 411 NHAAGAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 451


>gi|218232960|ref|YP_002366695.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218160917|gb|ACK60909.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 458

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 58/221 (26%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + I H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 237 KAEQMKNEFIASISHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 296

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +       +      + +      E +     
Sbjct: 297 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPKSEEKEIQFITTIDRIELMGDRNR 356

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     +   + I     + + +  ++  G         + +     + 
Sbjct: 357 LKQVFLNIVQNAIKYSHKKSTIHIEATKIEGQAVIKVRDEGIGIAKEHLPYIEQSFYQIN 416

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      I    V  +   +   L     +     +   L 
Sbjct: 417 NHAAGAGIGLAIVKKMVELHGGVLSVTSKEGIGTTILIKLP 457


>gi|157963740|ref|YP_001503774.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella pealeana ATCC 700345]
 gi|157848740|gb|ABV89239.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella pealeana ATCC 700345]
          Length = 346

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 63/217 (29%), Gaps = 21/217 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-----LAF 71
            L   + H+I +P+G +  + +LL     + E+ +   L    A      +         
Sbjct: 129 YLVRNLAHEIKNPLGGLRGAAQLLSRELKDPELNEFTDLIIEQADRLRNLVDRLLGPQKP 188

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS-- 129
                 +    +  + +++   +  +  +   +     D+  +  ++   +  +   +  
Sbjct: 189 TQHSLYNIHEVIQKVLKLVNVTLPDNIELTQDYDPSIPDIEMDPDQLQQTILNIVQNAVQ 248

Query: 130 ------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
                            +VTI  +  K   + S+  +G     PE    +    V     
Sbjct: 249 ALEPSGGHIRLKTRTQHQVTIGTKRHKLVLMLSVIDDGPGI-QPELMDTLFYPMVTGREQ 307

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +        A  +  R+  +    H    +  L 
Sbjct: 308 GSGLGLSIAHNFARLHGGRIDCDSTVGH-TEFTITLP 343


>gi|94264236|ref|ZP_01288031.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93455347|gb|EAT05551.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 67/240 (27%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-------EVMQLIR 54
           A++     +     +   + + H++ +P+ AI    E+L E   E        ++ ++  
Sbjct: 551 ARDAAKAANQAK--SNFLANMSHELRTPLNAIIGYSEILLEEAEEHGLEGCAEDIQRIRE 608

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------- 107
            +     +  + +  +   +G +   +   D+++++   + + + +              
Sbjct: 609 AARHLLGLINEVLDFSKTESGRISLTMEECDLDELMAAVVDIIRPLLPERENRLLVETEE 668

Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARF 160
                        +IL NL   A     +G    +    ++D        ++  G     
Sbjct: 669 ELGTIRTDGTRLRQILYNLLSNAAKFTEKGFITLRTRRLMRDGGEWVEIDIQDTGIGI-S 727

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E+  ++          +        +               +            +  L 
Sbjct: 728 EEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVSTPGQGSTFTVSLP 787


>gi|327439016|dbj|BAK15381.1| signal transduction histidine kinase [Solibacillus silvestris
           StLB046]
          Length = 458

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 73/234 (31%), Gaps = 20/234 (8%)

Query: 1   MAKNICFN----LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQ 51
           M+K + +     + +  L     S I H++ +P+  I    E+L+          +  ++
Sbjct: 221 MSKTLNYMADEIVKTDQLKNDFISSISHELRTPLTGIKGWAEMLESPEGLTEKEINFGLR 280

Query: 52  LIRLSSMSAIIRLKFM-RLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQV 102
           +I   S   I  ++ +   +   +  ++                 Q+       + R+++
Sbjct: 281 MINSESDRLIKLVEDLLNFSRYESNRIELHPTKFAYATLIEEVTLQLQSKANEKNIRMKL 340

Query: 103 SWTGEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           + T   I    +   ++LLN         P   ++ I   +S  + I  ++  G   +  
Sbjct: 341 NSTPVSIYADEDKIRQVLLNTLENGIKFSPHNSEIVIKQYESNGKAICIIRDEGIGIKEE 400

Query: 162 EKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +              +       +  ++   +    +      +   L 
Sbjct: 401 QIQHIMNSFYKADVKSVGAGLGLAISRTIILKHGGTIEVNSVYGKGTEVFIELP 454


>gi|326406735|gb|ADZ63806.1| osmosensitive K+ channel sensor histidine kinase [Lactococcus
           lactis subsp. lactis CV56]
          Length = 876

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 68/233 (29%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR---LSSM 58
            +     +    L   L   I HD+ +P+ +I    +LL +       +Q+         
Sbjct: 634 QQKNEIQIEQEQLRVNLVRAISHDLRTPLTSISGHAKLLMKNDSTINKLQIQELSAYIYD 693

Query: 59  SAIIRLK---------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            ++  +           +          + +  + +      D         ++   E +
Sbjct: 694 DSMWLINLVENLLSITRLDEKIELKLEANIIDEVVEEALKHVDRHLKQHEFSLNLADELL 753

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKF 164
               +     ++++NL   A    P   K+ +  +   +E +  +  NG        EK 
Sbjct: 754 MAKMDVALMIQVIVNLINNAVKYTPINSKIELQTKKINDELVLEVSDNGPGITDKAKEKI 813

Query: 165 TQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    +D      +       +   +  ++  +    +  ++   L 
Sbjct: 814 FDLFYTDENRQVDSKRGLGLGLSLCKSIILAHGGQIYVKDNQPNGAIIGFKLP 866


>gi|317483933|ref|ZP_07942870.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
 gi|316924807|gb|EFV45956.1| hsp90-like protein [Bilophila wadsworthia 3_1_6]
          Length = 858

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+ I     +    +   +RI H+I +P+ AI     LL +   +      +R   +SA 
Sbjct: 470 AEAIQRAHEASKAKSEFVARISHEIRTPLNAIIGMNYLLKQSCTDPVQESYLRKMELSAK 529

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WT 105
                              + +          +  +  I +             +     
Sbjct: 530 NLLSIINDVLDFSKIESGKLEIEKNTLSIEKLVRDVVSINEPKAKAANESFETHIDPGIP 589

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161
              I  +   ++I+LNL   A      G          V       +FS++  G      
Sbjct: 590 DVLIGDTLRISQIMLNLVSNAVKFSHHGTIKIEVLCERVHGENVTLLFSVRDQGIGMSQQ 649

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   ++                   +      +L       +     +         L+
Sbjct: 650 QL-DKLFIPFTQADGSTTRKYGGTGLGLSICKMLVELMHGEIWAVTEEGVGSTFFFRLQ 707


>gi|313114523|ref|ZP_07800037.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310623146|gb|EFQ06587.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 627

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 59/236 (25%), Gaps = 22/236 (9%)

Query: 1   MAKNIC-FNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQL 52
           + K        + +L A L   I HD+ +P+ +I  +        E LD          +
Sbjct: 384 LEKEQATVQAKNEELRANLLRTISHDLRTPLTSISGNASNLLSNGETLDTETRNKICTDI 443

Query: 53  IRLSSMS---------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
              +                             +D +I         +            
Sbjct: 444 FDDAQWLIGLVENLLSITRIEDGRMNLQISPQLMDEMIEEALHHVNRKSCEHTITTQYGD 503

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   +R   ++++NL   A    P G  + IS     ++ +  +  NG       K
Sbjct: 504 EILLVNVDARLIMQVVVNLVDNAIKYTPVGSVIQISAYRKDHQVVVEVADNGPGIPDRAK 563

Query: 164 FTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +  +  S  +       +   +   L       +  V S  L 
Sbjct: 564 AQVFEMFYTGQSRIADSHRSLGLGLPLCRAILTAHGGTLTLRDNIPNGSVFSFALP 619


>gi|299133494|ref|ZP_07026688.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
 gi|298591330|gb|EFI51531.1| multi-sensor signal transduction histidine kinase [Afipia sp.
           1NLS2]
          Length = 600

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 69/242 (28%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLI 53
            + +       +      +   + + H++ +P+ AI    E++              +  
Sbjct: 328 EQALEAARQEAEQAGASKSRFLATMSHELRTPLNAIIGFSEMIAREDEMKLDAARRREYA 387

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------- 102
            L + S +  L  +      +        L        + ++    + V           
Sbjct: 388 GLINESGLHLLSVVNGILDMSKMESGKFELVSEPFAPREALSSCCNLMVLKARDNGIDLT 447

Query: 103 ----SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
               S   +    +R   +ILLNL   A      GG VT+S Q    E +  +   G   
Sbjct: 448 TRMPSDLPQMTGDARAFKQILLNLLSNAIKFTGEGGSVTVSAQVEGRELLLRVADTGIGI 507

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +   ++ +         +   +   +    V  L   +   +  E   D    +S  
Sbjct: 508 GKDDL-ARLGNPFFQAGASYQGRREGTGLGLSIVKSLVSLHGGEMKVESELDRGTTISVR 566

Query: 213 LE 214
           L 
Sbjct: 567 LP 568


>gi|256005902|ref|ZP_05430848.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|255990138|gb|EEU00274.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|316939664|gb|ADU73698.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 479

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 59/222 (26%), Gaps = 23/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIRLKFMRLA 70
           +L S I HD+ +PI +I   +E + +               +   +     +    +  +
Sbjct: 255 MLFSSISHDLKTPITSIKGYVEGILDGVANTPQKVEKYLRTVHSKAVHMDRMIDDLLLYS 314

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSWTGEKIDLSRERAKI 118
                 V       D+ +  ED +              +    +      +    +  ++
Sbjct: 315 RLDMHKVSFNFEKTDVLKYFEDCMYEIDIELEKSNIKVELHNNLRGKRYIMIDRDQVRRV 374

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE---KFTQIVDGNVES 174
           ++N+   +   + +                +  +K NG      +    F +    +   
Sbjct: 375 VINIIDNSRKYMDKEQGKIDIFLREATSNVVIEIKDNGAGISESDLSYIFDRFYRADSAR 434

Query: 175 TI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +       +   +  ++           +   L+K
Sbjct: 435 DTRKGSGLGLAIAKQIIEGHGGKIWAVSRMGEGTSVMISLKK 476


>gi|239940053|ref|ZP_04691990.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 15998]
 gi|239986542|ref|ZP_04707206.1| putative two-component system sensor kinase [Streptomyces
           roseosporus NRRL 11379]
          Length = 385

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 52/221 (23%), Gaps = 22/221 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 157 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAGRVTRLIAELLD 216

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                          VD    +    Q +       +R  V   G   DL  +     ++
Sbjct: 217 ISRIDSGRLELRRQPVDISAAVARHIQALITGGQAAERFLVRTRGPLPDLWADPDKVDQV 276

Query: 119 LLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L NL   A                      +     ++   G                  
Sbjct: 277 LGNLLENAVRHGEGTVTIEIAPAAAPGGCDEMGTAVTVSDEGPGIPEESMSRVFTRFWRG 336

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S      +  Y V  +   +   +  +           +L 
Sbjct: 337 SKRGGTGLGLYIVKGIVEAHGGTITVDRGPRGGAEFRFILP 377


>gi|229030905|ref|ZP_04186924.1| hypothetical protein bcere0028_29660 [Bacillus cereus AH1271]
 gi|228730399|gb|EEL81360.1| hypothetical protein bcere0028_29660 [Bacillus cereus AH1271]
          Length = 436

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +       +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLKVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKISALISQLLLLARADQESHNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V I +   ++  I  +  NG         
Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYSRANGTVHIQLFRDESNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S+  +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSSTGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|229128486|ref|ZP_04257465.1| hypothetical protein bcere0015_29320 [Bacillus cereus BDRD-Cer4]
 gi|228654989|gb|EEL10848.1| hypothetical protein bcere0015_29320 [Bacillus cereus BDRD-Cer4]
          Length = 436

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    +++    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQENSIEITTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESKLGEGSTFTFKLP 431


>gi|255099934|ref|ZP_05328911.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255305823|ref|ZP_05349995.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
          Length = 309

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 73/232 (31%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60
           +N   +L   D  +  L + + HD+ +P+  +   L+ +     IE E  + + ++   A
Sbjct: 77  ENKLLSLKKSDKASKQLMTSLSHDVRTPLTTLIGYLDAVHSGIVIEQEREEYLEIARRRA 136

Query: 61  IIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                ++ + F +                  +    +      I     ++  + +    
Sbjct: 137 YDLKDYIDVLFDWFRLNSDEFTLSIESVEIAELSRNILKDWIPIFHEKKLNFEIDIPENR 196

Query: 107 EKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
             ++L  +  ++++ NL     A            +DS    +  ++ +G        P 
Sbjct: 197 LMVNLDPDGYSRVVNNLVQNVLAHSKARQIKITMSEDS-RMVLLRVEDDGVGIARENLPH 255

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F ++   +   +     +    V  +      ++  E       V +  L 
Sbjct: 256 IFERLYKCDKGRSEKGSGLGLSIVSQMVERMGGQVSVESEIGKYTVFTVSLP 307


>gi|251795760|ref|YP_003010491.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543386|gb|ACT00405.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 459

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 58/218 (26%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H+I SP+ +I    + L     ++         +I   +       + +     
Sbjct: 241 FVANVSHEIQSPLASIQGYADSLVHQDINDAERIRHYASIIGQETRHLAALSRQLLLLST 300

Query: 68  ------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                             L     + +       +  RV V              ++  N
Sbjct: 301 LDHSGYSPGKQPFLLKPQLRQAVQLLEWQLTEKEIAIRVAVPGKLRIYGDEVLLMQVWTN 360

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TI 176
           L   A   +P G  + +S +      I +++  G+     +    + +   G+       
Sbjct: 361 LLSNAVKHIPGGRSIHVSAEQEDGACIVTVRDTGDGIPEDQLPYIYDRFYRGDSARDRRS 420

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            S  +    V  +   +   +  +   +        + 
Sbjct: 421 GSTGLGLSIVQRIVQLHGGTIEADSRFERGTTFRVRIP 458


>gi|159037021|ref|YP_001536274.1| histidine kinase [Salinispora arenicola CNS-205]
 gi|157915856|gb|ABV97283.1| histidine kinase [Salinispora arenicola CNS-205]
          Length = 471

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 62/232 (26%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEV----MQLIRL 55
           + +       S  L     +   H++ +P+ A+H   +L L++   + +     M+ IR 
Sbjct: 236 LNEAFDQRERSEALTRTFVADASHELRTPLSAVHGWADLYLNDGITDWDGVDEAMRRIRT 295

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAVDKRVQVSWTGE 107
            +      ++ +                 D+ +V                  + V     
Sbjct: 296 ETTRMGALVEQLLTLARLDAHQPLARDEVDLGRVCADVLDSLRVTAAHHRLTLAVDERVT 355

Query: 108 KIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFP---EK 163
               +    +++ NL   A    P          +D   + +  +   G           
Sbjct: 356 VTGDAAALRQVVQNLVGNAVRHTPPGTPVEVRVHRDDDEDAVLVVHDEGPGLDAEGLAHA 415

Query: 164 FTQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +          +    V  +   +   +  +      + ++  L 
Sbjct: 416 FDRFWRADPGRAAPGGTGLGLAIVRDIVGAHGGTVALDSAPGQGLTVTVRLP 467


>gi|126698401|ref|YP_001087298.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|115249838|emb|CAJ67655.1| Two-component sensor histidine kinase [Clostridium difficile]
          Length = 311

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 73/232 (31%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60
           +N   +L   D  +  L + + HD+ +P+  +   L+ +     IE E  + + ++   A
Sbjct: 79  ENKLLSLKKSDKASKQLMTSLSHDVRTPLTTLIGYLDAVHSGIVIEQEREEYLEIARRRA 138

Query: 61  IIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                ++ + F +                  +    +      I     ++  + +    
Sbjct: 139 YDLKDYIDVLFDWFRLNSDEFTLSIESVEIAELSRNILKDWIPIFHEKKLNFEIDIPENR 198

Query: 107 EKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
             ++L  +  ++++ NL     A            +DS    +  ++ +G        P 
Sbjct: 199 LMVNLDPDGYSRVVNNLVQNVLAHSKARQIKITMSEDS-RMVLLRVEDDGVGIARENLPH 257

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F ++   +   +     +    V  +      ++  E       V +  L 
Sbjct: 258 IFERLYKCDKGRSEKGSGLGLSIVSQMVERMGGQVSVESEIGKYTVFTVSLP 309


>gi|113866328|ref|YP_724817.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Ralstonia eutropha H16]
 gi|113525104|emb|CAJ91449.1| signal transduction histidine kinase regulating C4-dicarboxylate
           transport system [Ralstonia eutropha H16]
          Length = 665

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 62/237 (26%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDE------VGIEDE 48
           +       + +  L AL  + + I H++  P+ A+    +    LL+        G    
Sbjct: 416 LRAAQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRVLLERGQLAAAEGNLTA 475

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +  L             F   A      V     +  +  ++   +              
Sbjct: 476 IADLTERMGKITGQLKLFAGKARPVHRPVALRAAVDHVLALLAPRLGAVTVNVTGLDALP 535

Query: 109 ----IDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
                    +  ++LLNL   A  ++         +    Q   +     ++ NG     
Sbjct: 536 GLAVRADELKLEQVLLNLLGNALDAIAAAAPAQGQIDLEVQAEDHAVTIVVRDNGTGIAP 595

Query: 161 PEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                ++ +    +        +       +  E   +L    +       + +L +
Sbjct: 596 QALP-RLFEPFFTTKETGQGLGLGLAISSSIVREFGGQLSVANVPGGGAQFTLVLAR 651


>gi|70731183|ref|YP_260924.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
 gi|68345482|gb|AAY93088.1| sensory box histidine kinase/response regulator [Pseudomonas
           fluorescens Pf-5]
          Length = 775

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 73/232 (31%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSM 58
           A+    + S     +   SR+ H++ +P+ AI    +LLD     G   +V  ++R    
Sbjct: 394 AREEAESASRAK--SEFLSRMSHELRTPLNAILGFAQLLDMDSNAGQRPQVGHILRAGQH 451

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------TG 106
              +  + + +A    G +   +    +  V+ + + +   +                  
Sbjct: 452 LLGLINEVLDIARIEAGRLPLNVEPMALAAVLHEALTLVSPMAADAGITLAPLPELAADS 511

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I   +   ++LLNL   A      GG+V+I V    +    S+   G      E+  +
Sbjct: 512 GVIADRQRLIQVLLNLLSNAIKYNRAGGRVSIDVAIEASRLRLSVLDTGAGI-TAERLER 570

Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +            ++   +       L       L  +         +  L 
Sbjct: 571 LFKPFERLDADPRVEGTGLGLALSRSLLEMMDGSLGVQSTPGSGSCFTLELP 622


>gi|84517373|ref|ZP_01004726.1| sensory box sensor histidine kianse/response regulator [Loktanella
           vestfoldensis SKA53]
 gi|84508737|gb|EAQ05201.1| sensory box sensor histidine kianse/response regulator [Loktanella
           vestfoldensis SKA53]
          Length = 748

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 69/237 (29%), Gaps = 31/237 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMS--- 59
           + S  + A+  L   + HD  + + AI    +LL    DE       +  I  ++     
Sbjct: 364 VQSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDEGDQNYSDLIQIHQNANRAAS 423

Query: 60  -AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                L F R        +D    L D+  ++   +     + +    + + +  ++ ++
Sbjct: 424 LVGQLLAFSRKQTLQPEVIDLRETLSDLTHLLNRLVGEKVTLTLDHDPDLLPIRADKRQL 483

Query: 119 LLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARF 160
              L      A  ++                       +V    +     +  +G+    
Sbjct: 484 EQVLMNLVVNARDAMQGAGDIRVTTQNLRLRDPMVKDRAVVPLGDYVQVKVIDHGHGI-S 542

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           P+K  +I +    +    +   +       +  +    +  +         + L  +
Sbjct: 543 PDKLHKIFEPFYTTKRPGEGTGLGLSTAYGIVKQTGGYIFADSEVGKGTEFTLLFPR 599


>gi|188493157|ref|ZP_03000427.1| phosphate regulon sensor protein PhoR [Escherichia coli 53638]
 gi|188488356|gb|EDU63459.1| phosphate regulon sensor protein PhoR [Escherichia coli 53638]
          Length = 431

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAKTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|114563883|ref|YP_751397.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
 gi|114335176|gb|ABI72558.1| periplasmic sensor signal transduction histidine kinase [Shewanella
           frigidimarina NCIMB 400]
          Length = 598

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 71/231 (30%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLE---------LLDEVGIEDE- 48
           +       + +  L  +  L + I H++  P+ A+ +  +         ++++     + 
Sbjct: 361 LKDTQDELIQAAKLTVIGSLSASINHELNQPLAALRSYAQNTQTFIGRNMIEDASSNIKI 420

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSW 104
           +++L    +        F R + G   + +    +     +++  +           ++ 
Sbjct: 421 MIELTDRLADIIGQFKSFTRKSQGKDNATEINQSIEQALTIVQPEMDKQGVKLSLKLLTG 480

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEK 163
             +    S    ++L+NL   A  ++ +  +          ++   S++ +G   R  + 
Sbjct: 481 KCQIWGDSVRLQQVLVNLISNAIVAMHQSTERQLQIKVYCDSKVNISIQDSGPGVRESQM 540

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     S      +       +    +  +  E       +   +L 
Sbjct: 541 NKIFEPYYTTSERQGLGLGLSISQRIIESMQGSITVENAIPGGAIFHIILP 591


>gi|125975547|ref|YP_001039457.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281416558|ref|ZP_06247578.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|125715772|gb|ABN54264.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|281407960|gb|EFB38218.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
          Length = 479

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 59/222 (26%), Gaps = 23/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIRLKFMRLA 70
           +L S I HD+ +PI +I   +E + +               +   +     +    +  +
Sbjct: 255 MLFSSISHDLKTPITSIKGYVEGILDGVANTPQKVEKYLRTVHSKAVHMDRMIDDLLLYS 314

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQVSWTGEKIDLSRERAKI 118
                 V       D+ +  ED +              +    +      +    +  ++
Sbjct: 315 RLDMHKVSFNFEKTDVLKYFEDCMYEIDIELEKSNIKVELHNNLRGKRYIMIDRDQVRRV 374

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE---KFTQIVDGNVES 174
           ++N+   +   + +                +  +K NG      +    F +    +   
Sbjct: 375 VINIIDNSRKYMDKEQGKIDIFLREATSNVVIEIKDNGAGISESDLPYIFDRFYRADSAR 434

Query: 175 TI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +       +   +  ++           +   L+K
Sbjct: 435 DTRKGSGLGLAIAKQIIEGHGGKIWAVSRMGEGTSVMISLKK 476


>gi|330870610|gb|EGH05319.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 444

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 69/230 (30%), Gaps = 25/230 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSS 57
            S+ + A+  L   I HD  + +  +  SL+L+                D  +   + ++
Sbjct: 70  QSLKMEAVGQLTGGIAHDFNNMLTGVIGSLDLIKLRMASGRLEGVERFMDAALISAQRAA 129

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                 L F R       +V     +  +  +++  +     ++   + E   +  +  +
Sbjct: 130 SLTDRLLAFSRRQSLDEKAVSVNNLITALADLLQKTVTEKIIIKFDLSPEDPWVFADANQ 189

Query: 118 ILLNLFM---VAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +   +      A  ++P                 +        ++  G+     +   ++
Sbjct: 190 LENAVLNLVINARDAMPHGGGLTIATCVEQEVQDEPLRHVCVQVRDTGHGI-PKDMLDKV 248

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +        +    V   A+++  RL  E        +S  L K
Sbjct: 249 TEPFFTTKPIGQGTGLGLSMVYGFANQSNGRLSIESTTGVGTTVSICLPK 298


>gi|310818444|ref|YP_003950802.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391516|gb|ADO68975.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 975

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 16/241 (6%), Positives = 57/241 (23%), Gaps = 28/241 (11%)

Query: 1   MAKN---ICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
           M +          ++     +     S   H++ +P+ A    LEL++          + 
Sbjct: 733 MRRESSLQEARAEALKRAVQVRDEFLSIASHELKTPLMAFRLQLELIERSLGPESRLSLA 792

Query: 51  QLIRLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
             + ++                     +  + L        + +    +  +   +    
Sbjct: 793 SRLSVAGRQVQRLNTLVETLLDVSQLSMGRLMLHLEEVDLAEVVGETVEQLRGSLERAGC 852

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
              V+V              ++++NL   A            + ++       ++   G 
Sbjct: 853 SLTVEVERPLVGRYDRVRFERVVMNLLDNALKYGEGKPLRVRAWKEQGIS-RLTVADQGM 911

Query: 157 LARFPE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                +    F +              +  +    +   +   +  +         +  +
Sbjct: 912 GISPEDQARIFERFERAVPGRQYGGLGLGLWIARQVVEAHGGHIQVDSTPGQGTTFTVQI 971

Query: 214 E 214
            
Sbjct: 972 P 972



 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 60/237 (25%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSS 57
                 +  L  L        S + H+  +P+  +   LE +L    + +   + + +  
Sbjct: 315 EEERKRAEQLAELDRAKTAFFSNVSHEFRTPLTLMLGPLEDVLASGTLPEAAARELDVVH 374

Query: 58  MSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRV----QV 102
            +A   L+ +     ++             VD      D+                    
Sbjct: 375 RNATRLLRLVNTLLDFSRLEAGRLEASFEPVDLAAYTADLASSFRSVAERAGLTLTVDCP 434

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         KI+LNL   A     +G         +       +   G      +
Sbjct: 435 PLPAPFYVDREMWEKIVLNLLSNAFKFTFQGTITVRLRARTGQ-AWLEILDTGTGIPPED 493

Query: 163 K---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +     G    T +   I    V  LA      +  E ++      + +L 
Sbjct: 494 LPHLFERFYRVKGAQGRTHEGTGIGLALVQDLARLQGGEVRVESVEGQGSCFTVVLP 550


>gi|325681395|ref|ZP_08160921.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Ruminococcus albus 8]
 gi|324106885|gb|EGC01175.1| putative alkaline phosphatase synthesis sensor protein PhoR
           [Ruminococcus albus 8]
          Length = 508

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 61/231 (26%), Gaps = 22/231 (9%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           N+   LS+ + +     S + H++ +P+ AI    E +     +V    + M++I   + 
Sbjct: 243 NMAEELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYGDVETFKKGMRVINSETE 302

Query: 59  SAIIR------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                             + +          +    +   ++            +     
Sbjct: 303 RLSQMVEELLDFSRIQDNRLLLQMDTIDILAELGETVLIYQERARVLGITLNYFEPDMLP 362

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++ +N+   A     +G  V++   + + +   S+   G      +    
Sbjct: 363 FVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEAYEEEGDICISVSDTGIGISKEDLPRI 422

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    N         I       +   +   L  +        +   L 
Sbjct: 423 KQKFFKANHTRR--GSGIGLAVADEIIARHGGTLTIDSEQGVGTTVMITLP 471


>gi|289628977|ref|ZP_06461931.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
          Length = 422

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 69/230 (30%), Gaps = 25/230 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSS 57
            S+ + A+  L   I HD  + +  +  SL+L+                D  +   + ++
Sbjct: 48  QSLKMEAVGQLTGGIAHDFNNMLTGVIGSLDLIKLRMASGRLEGVERFMDAALISAQRAA 107

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                 L F R       +V     +  +  +++  +     ++   + E   +  +  +
Sbjct: 108 SLTDRLLAFSRRQSLDEKAVSVNNLITALADLLQKTVTEKIIIKFDLSPEDPWVFADANQ 167

Query: 118 ILLNLFM---VAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +   +      A  ++P                 +        ++  G+     +   ++
Sbjct: 168 LENAVLNLVINARDAMPHGGGLTIATCVEQEVQDEPLRHVCVQVRDTGHGI-PKDMLDKV 226

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +        +    V   A+++  RL  E        +S  L K
Sbjct: 227 TEPFFTTKPIGQGTGLGLSMVYGFANQSNGRLSIESTTGVGTTVSICLPK 276


>gi|317127228|ref|YP_004093510.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315472176|gb|ADU28779.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 422

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 66/218 (30%), Gaps = 12/218 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIR 63
            L  + +V  + + I H+I +P+      L+ +           + +         A   
Sbjct: 203 RLEKLRIVGDIAASISHEIRNPLTVTRGFLQFMKRNDITPDKRTQYIDFSLGELSRAEDI 262

Query: 64  LKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +                   ++ L  + ++         V+   + +     I   ++  
Sbjct: 263 INDYLTFAKPTLENVMKLDVLEELKYVKNVVTPFALINNVEILFKNTAEVFVIGEKQKLH 322

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           + L+N+      ++P GG +TI +Q        +++  G      E+  ++      +  
Sbjct: 323 QCLINIVKNGVEAMPDGGILTIDLQMINKHAHIAIQDTGIGMN-REQIERLGSPYYSTKD 381

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +      ++      +    ++ +  
Sbjct: 382 KGTGLGTMVVYSIVKAMNGKMNVASELNKGTTITLVFP 419


>gi|262376981|ref|ZP_06070207.1| sensor protein [Acinetobacter lwoffii SH145]
 gi|262308019|gb|EEY89156.1| sensor protein [Acinetobacter lwoffii SH145]
          Length = 521

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 70/223 (31%), Gaps = 11/223 (4%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLI 53
           AK +   +  + L AL  L + I H+I +P+ AI  + +L  +   E + +      +  
Sbjct: 298 AKKLNQQVQQLKLAALGQLSASIAHEIRNPLAAIVQANDLYLDSETEQQQVLHQMIGRQA 357

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                     L  ++    +   +     +    Q     I    +  +           
Sbjct: 358 TRIDRIIQDTLNMVKNKETHPVPIHLNEFIPLFIQEDLADIRDQIQFNIDIPLVIQFDEA 417

Query: 114 ERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  +IL+NL   A          + ++V   ++     ++  G+     +    +     
Sbjct: 418 QFRQILINLIRNAIRHNSADAAYIQLNVHPYEHRVWIDVRDFGSGVAVHD-QALLFKPFF 476

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            ++I    +  Y        N+ +L   I  +         ++
Sbjct: 477 STSISGTGLGLYLSHSFCEANQAQLNY-IQQEQGACFRISCQR 518


>gi|284035686|ref|YP_003385616.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Spirosoma linguale DSM 74]
 gi|283814979|gb|ADB36817.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Spirosoma linguale DSM 74]
          Length = 492

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 16/229 (6%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMS 59
           A+        + +   +   I H++ +P+  +  +LE L +      + V     +   +
Sbjct: 265 AQQDLILAEKLTMTGKIARSIAHEVRNPLTNLSLALEQLKDELDTDNEYVTMFTDIIGRN 324

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----------IAVDKRVQVSWTGEK 108
                + +      +   D      D  QV+ +                +   +    + 
Sbjct: 325 VDRIGQLITEMLNSSKPRDLDRKKQDFNQVVRETLQLVSDRIKLKRMRLETSFLEDDCQA 384

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +    +    LLN+ + A  ++  G       +           +  NG      ++  +
Sbjct: 385 LIDRDQVKTALLNILVNAVEAMQEGKGILCVKTNCTEDKRVYVEVTDNGGGISETDR-QR 443

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + D           +       + + +K  +  E              K
Sbjct: 444 LFDPFFTGKSGGMGLGLTATQNIINSHKGSIEVESQVGLGTTFRLYFPK 492


>gi|222082058|ref|YP_002541423.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
 gi|221726737|gb|ACM29826.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Agrobacterium radiobacter K84]
          Length = 949

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 59/240 (24%), Gaps = 31/240 (12%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       +      +L  + + H+I +P+ AI     LL    +       +     
Sbjct: 184 ETLEVRTREAEQANAAKSLFLANMSHEIRTPMNAILGFSHLLGRTELTARQHDYVTKIRG 243

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQV 102
           ++   L  ++    ++      + L          I                    +V  
Sbjct: 244 ASDRLLSLLKDILDFSKIEAGKMALEKASFDPRAMIERTMELSTLKAQEKGIAIGWQVDP 303

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLA 158
           +            ++++LNL   A      G           QDS+      ++  G   
Sbjct: 304 AIPAMLRGDELRLSQVVLNLVSNAIKFTSSGEVTLKLNLREHQDSRCVIEGVVRDTGLGM 363

Query: 159 RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +   ++ D                 +       L       +  E  + H    +  
Sbjct: 364 SSGQV-ARLFDSFTQADSSTTRRFGGTGLGLAISRQLVALMDGGISVESKEGHGSTFTFT 422


>gi|220924442|ref|YP_002499744.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219949049|gb|ACL59441.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 900

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
           A+      S+    +   + + H+I +P+  +    +LL  +  +  E  +L+     + 
Sbjct: 503 ARREAEAGSAAK--SEFLATMSHEIRTPLTGVLGYADLLTAQSDLAPEHRRLVGRIRSAG 560

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQVSW 104
              L  +     ++      I L          +                    R+  + 
Sbjct: 561 EALLTIVDDVLDFSKIEAGEITLDPKPFSPAQLVDEALALVRAAADRKQLALSARIDPAI 620

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLA 158
               +       ++LLNL   A                              +   G   
Sbjct: 621 PERLVGDVGRLRQVLLNLLNNAVKFTRAGSVTVTVACEPAGPDAQDCPIRICVTDTGIGI 680

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              EK  ++          ++   +   +       L      R+  +            
Sbjct: 681 -PEEKRGRLFQRFSQVDGSIQRHYEGTGLGLAISRRLIEAMNGRIDVDSRAGEGSTFWFA 739

Query: 213 LE 214
           L+
Sbjct: 740 LK 741


>gi|90418499|ref|ZP_01226411.1| putative two-component signal transduction histidine kinase
            [Aurantimonas manganoxydans SI85-9A1]
 gi|90338171|gb|EAS51822.1| putative two-component signal transduction histidine kinase
            [Aurantimonas manganoxydans SI85-9A1]
          Length = 1302

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 63/237 (26%), Gaps = 26/237 (10%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLS 56
            ++I        L     + + H++ +P+ +I  SL L+              ++ +   +
Sbjct: 915  QDINDRKEMDRLKNEFVATVSHELRTPLTSIRGSLGLIQGVMAKDVPPAATRLLTIAVAN 974

Query: 57   SMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVS 103
                +  +            +    T  VD    +    +  + + A             
Sbjct: 975  CERLVALINDILDLEKITAGMMAFETVLVDPNAAVSQAIEANQPYFARFGVSVAFNATGK 1034

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                         ++L NL   A    P+GG + ++++        S+  +G      E 
Sbjct: 1035 GEAWIPVDPARFQQVLANLLSNAAKFSPQGGIIDVAIEPIDGAIRISVTDHGTGI-PAEF 1093

Query: 164  FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++I D                 +  +    +       +    +          + 
Sbjct: 1094 QSRIFDRFTQADSSATREKGGTGLGLHITRQIIETMGGTIDFANVPGAGARFWIDMP 1150


>gi|75909154|ref|YP_323450.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75702879|gb|ABA22555.1| multi-sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 573

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 64/243 (26%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEV------GIED 47
            K     L +    A           + + H++ +P+ AI    +LL +         + 
Sbjct: 327 RKQTEMKLRASQAAAEAGSRAKSEFLATMSHELRTPLNAIMGLSQLLQQEIVGSLNEKQQ 386

Query: 48  EVMQLIRLSSMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           E +  I  S    +  +  +         +        +   +    +  V +  I+   
Sbjct: 387 EYISCIYSSGEHLLALINDILDLSKVEAGKEELFLIPLLVIDVCNDVLLTVRDRAISKGL 446

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGN 156
           ++      E      +  +I   L  +   ++       +  +V+       F +   G 
Sbjct: 447 KLTQEIDPEASICIADDRRIKQMLLNLLTNAIKFTSVGEVSLTVKRVPEGINFIISDTGI 506

Query: 157 LARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                      +  + +D  +    +   +       LA  +   +            + 
Sbjct: 507 GIDSNQFPLLFEPFKQLDSRLNRQYEGTGLGLALTRKLARLHGGDVTVTSTVGVGSQFTL 566

Query: 212 LLE 214
            L 
Sbjct: 567 FLP 569


>gi|20093164|ref|NP_619239.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19918507|gb|AAM07719.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 1028

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 73/245 (29%), Gaps = 34/245 (13%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            ++    L +  L A   S         + H++ +P+ +I    ++L E     + ++ +
Sbjct: 468 RRSEEKLLQA-KLEAEAASCTKSEFLANMSHELRTPLNSIIGFSDILIERVFGELNEKQL 526

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106
           + +   S S    L  +      +      + L   E  ++      K            
Sbjct: 527 KYVNNISGSGKHLLGLINDILDLSKVEAGKMDLHYSEFTVDSVFEEVKSTLFPLAQAKSL 586

Query: 107 -----------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                      +         +IL NL   A    P GG+V++  + S +  +FS+   G
Sbjct: 587 EINFVVGPDFGDIQADRSRLIQILYNLVSNAIKFTPEGGRVSVYCKKSGSRALFSVTDTG 646

Query: 156 NLARFPEKFTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 E   ++     +             +    V  + + +K  +  E   +     
Sbjct: 647 IGI-SSEDQKKLFQPFTQIDSSSARQYCGTGLGLALVKKIVNLHKGDIWVESELEKGSTF 705

Query: 210 SALLE 214
              + 
Sbjct: 706 MFTIP 710


>gi|31791946|ref|NP_854439.1| two component system response sensor kinase membrane associated
           PHOR [Mycobacterium bovis AF2122/97]
 gi|121636682|ref|YP_976905.1| putative two component system response sensor kinase membrane
           associated phoR [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224989154|ref|YP_002643841.1| putative two component system response sensor kinase membrane
           associated [Mycobacterium bovis BCG str. Tokyo 172]
 gi|260185651|ref|ZP_05763125.1| putative two component system response sensor kinase membrane
           associated protein [Mycobacterium tuberculosis CPHL_A]
 gi|260203947|ref|ZP_05771438.1| putative two component system response sensor kinase membrane
           associated protein [Mycobacterium tuberculosis K85]
 gi|289446323|ref|ZP_06436067.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           CPHL_A]
 gi|289573377|ref|ZP_06453604.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           K85]
 gi|31617533|emb|CAD93643.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE SENSOR KINASE MEMBRANE
           ASSOCIATED PHOR [Mycobacterium bovis AF2122/97]
 gi|121492329|emb|CAL70796.1| Possible two component system response sensor kinase membrane
           associated phoR [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|224772267|dbj|BAH25073.1| putative two component system response sensor kinase membrane
           associated [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289419281|gb|EFD16482.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           CPHL_A]
 gi|289537808|gb|EFD42386.1| two component system sensor kinase phoR [Mycobacterium tuberculosis
           K85]
          Length = 485

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L           + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVGMLLSRIESEASRMGLLVDDLLLLARLDAHRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KILLNLFMVAHAS 129
           L  ++ +     A      +           +               ++L NL   A   
Sbjct: 318 LCRVDLLALASDAAHDARAMDPKRRITLEVLDGPGTPEVLGDESRLRQVLRNLVANAIQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ I  +  +G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTEGDDAILEVADDGPGMSQEDALRVFERFYRADSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVDSLVAAHGGAVTVTTALGEGCCFRVSLPR 468


>gi|121997175|ref|YP_001001962.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121588580|gb|ABM61160.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1266

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 56/245 (22%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ A+    +LL E  ++       
Sbjct: 508 RKAVEQALHQAKEAAEANNRAKSDFLANMSHEIRTPMNAVIGLGQLLIETDLDPVQRNYA 567

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---------- 103
                ++ + L  +     Y+      + L      + + +     +             
Sbjct: 568 EKMHNASRMLLGIINDILDYSKIEADRLTLDPHPFDLHELMDQMATLFGDQAGEKGLELF 627

Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKI 153
                         +   +++L NL   A      G        +          F ++ 
Sbjct: 628 LRVEPTIPSSLEGDALRLSQVLSNLLSNAIKFTKHGQVGLSITQLGQDPEGVRLHFQVED 687

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      ++       +              +       L       L  E        
Sbjct: 688 TGIGITPEQQRNLFQAFSQADTSTTRNYGGTGLGLVISQRLVAHMGGELRLESTPGEGTR 747

Query: 209 LSALL 213
            +  L
Sbjct: 748 FAFEL 752


>gi|320547403|ref|ZP_08041691.1| sensor histidine kinase CsrS [Streptococcus equinus ATCC 9812]
 gi|320447948|gb|EFW88703.1| sensor histidine kinase CsrS [Streptococcus equinus ATCC 9812]
          Length = 491

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 58/220 (26%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S + H++ +PI  I   L LL     D+  +  E +      +    I +  M     
Sbjct: 265 FVSDVSHELRTPIAVIKGHLGLLQRWGKDDPEVLCESLDAAYHEADRMSIMVNDMLDMIR 324

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSWTGEKIDLSRERAKILLN 121
             GS D   G     +   D +  + R+            V              + +L 
Sbjct: 325 VQGSFDLHKGEVTDLKQSIDVVLGNFRILYPDFRFSLVSTVEDCIYAEIYKHHFEQAILI 384

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI----- 176
           L             + +++    +  I  ++  G      +                   
Sbjct: 385 LIDNGVKYSSGSRNIHVTLDVLGDNAIVKVRDEGEGISQDDLNHIFERFYRTDKSRNRVS 444

Query: 177 --DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 I    +  +    ++++    + D     + ++ 
Sbjct: 445 TQGGLGIGLAILKQIVDAYELKVSVSSVVDEGTEFTLIIP 484


>gi|317970414|ref|ZP_07971804.1| adaptive-response sensory kinase [Synechococcus sp. CB0205]
          Length = 406

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 66/231 (28%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54
           + +     +  +     L   + H++ +P+ A   +L+ L+   I+          +L  
Sbjct: 168 LRQENETLIERLRGQERLLRMVAHELRTPLTASKLALQSLNLGQIDQTRFRDVLDRRLDD 227

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDS---LIGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           +  +S  +                     +    I ++ + ++     +         + 
Sbjct: 228 IEQLSKDLLEVGTTRWEALFNPQRIALGPLAAEAILELEKRWVGRGLELITDIPSDLPDV 287

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEK---- 163
               R   ++ LNL   A    P  G+V +     +      S+  +G      E+    
Sbjct: 288 YADQRRMRQVFLNLLENAFKYTPDAGQVRMSIFHRTSQWIEVSVCDSGPGIPVDEQERIF 347

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      ST     +       +   +  R+      D     +  + 
Sbjct: 348 QDRVRLPQTSSTTSGFGVGLSVCRRITEVHGGRIWVVSEPDEGACFNFTVP 398


>gi|317491163|ref|ZP_07949599.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920710|gb|EFV42033.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 896

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 69/232 (29%), Gaps = 20/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
           A +   +     L   L + + HD+ +P+  +    E+L      E     +    IR  
Sbjct: 655 AASARLDTEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLAAEKSPHAQQANQIRQQ 714

Query: 57  SMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            ++    +  +                +    + +    +  + + +   ++  +     
Sbjct: 715 ILNTTRLVNNLLDMARIQSGGFNLRKEWQSLEEIVGSAVNTLEPMLNSHPLNIDLPADLP 774

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
               D +    +++ NL   A         +TI  Q S++     ++  G      +   
Sbjct: 775 LVNCDGNL-IERVIQNLLENAGKYAGSESPLTIRAQASEHWLEVEIEDRGAGIPSEQLQL 833

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +   G+ ES I    +       +   +  ++  E I          L 
Sbjct: 834 IFNKFTRGDKESAIPGVGLGLAICRAIIEVHGGKIWAENIAQGGACFHFTLP 885


>gi|330916933|ref|XP_003297614.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1]
 gi|311329607|gb|EFQ94291.1| hypothetical protein PTT_08080 [Pyrenophora teres f. teres 0-1]
          Length = 2379

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 68/237 (28%), Gaps = 28/237 (11%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
            N+     +    +L  + + H++ +P+  +    ELL    +  E         + A   
Sbjct: 1879 NMKLKEEAARAKSLFLANVSHELRTPLNGVIGMSELLKASPLNGEQTGYADSIRVCADTL 1938

Query: 64   LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGE 107
            L  +     Y+      + + ++   + + IA                  ++++++    
Sbjct: 1939 LSIINDLLDYSKLEAGKMNVMEMPISLNETIAEVVRALAYTNAERGLKTIEQLELNPEML 1998

Query: 108  KIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             +       +IL+NL   ++   PR       V     D   +   S+   G      E+
Sbjct: 1999 VMADPVRLHQILMNLLSNSYKFTPRGSVTVRAVVDREGDDWVDVTCSVIDTGIGI-PDEQ 2057

Query: 164  FTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
              ++             +     +       L        +  E        ++  L
Sbjct: 2058 KQKLFLPFSQIESSSTRSYGGTGLGLSICKALIENVMHGTVRLESQPGQGTTVTFSL 2114


>gi|298481821|ref|ZP_07000011.1| two-component system histidine kinase [Bacteroides sp. D22]
 gi|298272043|gb|EFI13614.1| two-component system histidine kinase [Bacteroides sp. D22]
          Length = 809

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 56/234 (23%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AK I       +L     + + H+I +P+ AI     LL   G ++   +         
Sbjct: 573 LAKQIA---EKAELKQSFLNNMSHEIRTPLNAIVGFTNLLIGEGADEIEPEEKAAMIEIV 629

Query: 61  IIRLKF-------------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
               +                          +  +          + +I+  +     + 
Sbjct: 630 NNNNELLLKLVNDVLEISRLDSGNLSFDIKEHNITKIIKEIYVTYQTLIQPSLCFILELD 689

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARF 160
            + +           +++ N    A+     G          +++     +K  G     
Sbjct: 690 ETVSLPVNIDCFRFTQVISNFLNNANKFTKEGTITLGCKIYKEHQEVCVYVKDTGKGIDD 749

Query: 161 PEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E              +    +      ++      R+            S +L
Sbjct: 750 KELMMIFDRFYKTDEFEQGSGLGLSICKVIIERLAGRIEVHSEVGKGSCFSVIL 803


>gi|262171619|ref|ZP_06039297.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
 gi|261892695|gb|EEY38681.1| hypothetical protein VII_002442 [Vibrio mimicus MB-451]
          Length = 1325

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G  V       + + +   +F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQVMLLFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|261211895|ref|ZP_05926182.1| sensor histidine kinase [Vibrio sp. RC341]
 gi|260839245|gb|EEX65877.1| sensor histidine kinase [Vibrio sp. RC341]
          Length = 733

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 58/236 (24%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTTKQRQHLTSLYESG 399

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
              +  +     Y+                   +G I+ +                ++S 
Sbjct: 400 EHMMSLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCYEKGLKFQLHSEISD 459

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFP 161
           T           +I+ NL   A     +G              N     ++ +G      
Sbjct: 460 TRWYYGDKARLRQIVFNLLSNAVKFTEKGFVSVGLMEEKTHDGNYLTIKVQDSGIGI-AQ 518

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           E   +I                   +    V  +A      ++             
Sbjct: 519 EALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGSVVVHSEVGRGTCFEV 574


>gi|213584385|ref|ZP_03366211.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 276

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 66/215 (30%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         ++ 
Sbjct: 54  ANVSHELRTPLTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEV 113

Query: 80  LIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   E+V    +                     V  +   +    +    + NL   
Sbjct: 114 APALLLNEKVDVPMMLRVVEREAQTLSQQKHTFTFAVDDSLSVLGNEEQLRSAISNLVYN 173

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+S + + +   F ++ NG      E   ++ +                
Sbjct: 174 AVNHTPAGTHITVSWRRAAHGAEFCIQDNGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 232

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  +         S +L 
Sbjct: 233 GLGLAIVKHALNHHESRLEIDSSPGKGTRFSFVLP 267


>gi|153824379|ref|ZP_01977046.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2]
 gi|149741933|gb|EDM55962.1| sensor histidine kinase LuxQ [Vibrio cholerae MZO-2]
          Length = 857

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|154250849|ref|YP_001411673.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154154799|gb|ABS62016.1| multi-sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 445

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 18/240 (7%), Positives = 61/240 (25%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           + ++I        + A   +   H++ +P+ ++   ++ L      +    D+ + ++  
Sbjct: 197 LLRDITEARRIEAMRADFVAFASHELKTPLASLSGFIDTLRGHAKDDPEARDKFLGIMSD 256

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTG 106
            +      +  +                              +       +  + +    
Sbjct: 257 QATRMRHLIDDLLSLSRIELREHVRPSDAVDLFSVVNDIADGLTPLSERYEVEIGIHAPA 316

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFSLKINGNLAR 159
               +  +R ++   +  +A  +L  G              +  +     +++  G    
Sbjct: 317 GLPLVRGDREELGQVIQNLAENALRYGRTGKRIEISLAPDQKGGRPYVRLTVRDFGPGIA 376

Query: 160 FPEKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +                +    V  + + ++  L  E       V S LL 
Sbjct: 377 KEHIPRLTERFYRVDPAASRAKGGTGLGLAIVKHIVNRHEGTLTIESELGQGSVFSVLLP 436


>gi|119897027|ref|YP_932240.1| nitrogen regulation protein NR(II) [Azoarcus sp. BH72]
 gi|119669440|emb|CAL93353.1| nitrogen regulation protein NR(II) [Azoarcus sp. BH72]
          Length = 357

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 65/214 (30%), Gaps = 19/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---MSAIIRLKFMRLAFGYT 74
           L   + H+I +P+G I  S +LL+    + ++ +   +           +  +  +    
Sbjct: 141 LIRNLAHEIKNPLGGIRGSAQLLERELADPQLREYTEVIIAEADRLQDLMNRLLTSHSMM 200

Query: 75  GSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS---- 129
                    + +  + +      D  ++  +     +L+ +R +++  +  +A  +    
Sbjct: 201 RPAQLNIHDVLERVRRLILAEFPDVVIRRDYDTSLPELTADREQLIQAILNIARNAAQAL 260

Query: 130 ---------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
                         +VT++ +  K      +  NG      E   +I    V        
Sbjct: 261 GGKGEIRLRTRVARQVTLAKRRYKLALELQVIDNGPGI-PDEIRDKIFYPLVSGRDGGSG 319

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          +++  +  +           LL 
Sbjct: 320 LGLSLAQSFVEQHQGMIDVDSRPGR-TCFCILLP 352


>gi|119896457|ref|YP_931670.1| phosphate regulon sensor protein [Azoarcus sp. BH72]
 gi|119668870|emb|CAL92783.1| phosphate regulon sensor protein [Azoarcus sp. BH72]
          Length = 423

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 60/230 (26%), Gaps = 22/230 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------MQLIRLS 56
            L  ++ +     + + H++ +P+  +   LE L +   + E           ++     
Sbjct: 181 QLERLETMRQDFVANVSHELRTPLTVVGGFLETLIDGAGDFEPDDVQRYLRLALEQSNRM 240

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEKID 110
                  L    L  G     +  +G+  + + +               + +      + 
Sbjct: 241 RHLIEDLLTLSALETGAPAPAEERVGVATLVRDVYAEAEALSSGRHQLSLVLDTDAVLLG 300

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQI 167
             +E      NL   A    P GG++ +  +       F ++ +G             + 
Sbjct: 301 SHKELRSAFANLCSNAVRYTPDGGRIEVGWRQDDAGGEFWVRDDGIGIDAQHIPRLTERF 360

Query: 168 VD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                          +    V  +   ++  L            S    +
Sbjct: 361 YRVDRGRSRETGGTGLGLAIVKHILTRHQAELHVVSTPGAGSRFSVRFPR 410


>gi|86145971|ref|ZP_01064298.1| signal transduction histidine kinase [Vibrio sp. MED222]
 gi|85836176|gb|EAQ54307.1| signal transduction histidine kinase [Vibrio sp. MED222]
          Length = 574

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 62/234 (26%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      +     +   + + H++ +P+ A    ++ L    + DE   ++   S S+ 
Sbjct: 199 ARKDAERANKAK--SEFLAMMSHELRTPLNATIGLIDTLKSTPLNDEQQSILLNMSTSSE 256

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +                    +   +       + +     +   +  +++     +   
Sbjct: 257 LLLAIISDVLDFSKIESGCFSLAPQWSNARDTVTFVLSEQKKIADDKGLSLTLTSDIPEG 316

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+IL NL   A       G V +S+    +    S++  G      +  +
Sbjct: 317 ELHYIDPSRLAQILFNLIGNAIKFTEH-GHVHVSITYQHSSFRISVEDTGIGISSQQLSS 375

Query: 166 QIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +        +       L    + R+  E            L 
Sbjct: 376 LFSPFVQADSTITRRFGGTGLGLAITKRLVELMRGRISVESEPGKGSKFEVRLP 429


>gi|327485216|gb|AEA79623.1| Nitrogen regulation protein NR(II) [Vibrio cholerae LMA3894-4]
          Length = 354

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 119 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQA 177

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 178 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLIFERDYDPSLPNILMDT 237

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 238 DQIEQALLNIVSNAAQILANQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 296

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 297 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 349


>gi|325571901|ref|ZP_08147191.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
 gi|325155629|gb|EGC67833.1| sensor histidine kinase [Enterococcus casseliflavus ATCC 12755]
          Length = 464

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 68/218 (31%), Gaps = 17/218 (7%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   L + I H++ +P+  +  ++E + +    I  E +Q            +  + +  
Sbjct: 245 LRKRLTTDISHELRTPLATLKGNVEGMIDGVWKITPERLQSCYDEIDRLTRLIGNIEVIN 304

Query: 72  GYTGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAKILLN 121
                 D        +  L +            K + V   G+ I++  +     ++++N
Sbjct: 305 KIEAKYDHLNKTEFSIYKLIESVIENFSSKFESKNLHVEIQGDNINIFADKDKMNQVVIN 364

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVD--GNVESTI 176
           L   A     + G +  S+  +K+  +  ++ NG           F +      +    +
Sbjct: 365 LLSNAIKFTQKDGTIKFSISKNKDHVLLIVEDNGIGIEKDQQLHIFDRFYMADPSRSRAL 424

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    V  +   +K  +  +            L 
Sbjct: 425 GGQGIGLAIVKSVIEAHKGSITVKSKLGLGTKFVIKLP 462


>gi|320181619|gb|EFW56534.1| phosphate regulon sensor protein [Shigella boydii ATCC 9905]
          Length = 431

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEEVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|315126944|ref|YP_004068947.1| two-component member protein [Pseudoalteromonas sp. SM9913]
 gi|315015458|gb|ADT68796.1| putative two-component member protein [Pseudoalteromonas sp.
           SM9913]
          Length = 1103

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 56/216 (25%), Gaps = 21/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------ 65
             + + H+I +P+ AI    ++L +  +  E  + I   + +A   L             
Sbjct: 543 FMANMSHEIRTPMNAIIGFSDILMDSPLNKEQQKQIITVNNAARSLLHLLNDILDSAKLE 602

Query: 66  --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--KILLN 121
              + +   +    + L  +     +      +   ++++          +    ++L N
Sbjct: 603 KGKLEIQKVHFNLQELLDNIVSTFWLDAKRKDLQLILKIADNVNPFYFGDDTRLRQVLTN 662

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GNVESTI 176
           L   A     +G              +F ++ +G                   G      
Sbjct: 663 LIGNAIKFTEQGHVTVSVTHKPNQPILFEVQDSGIGIEKGRLEAIFKPFEQADGTTTRRF 722

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +       L      ++  +         S  
Sbjct: 723 GGTGLGTTISKQLVELMGGKIYAQSTLGQGSCFSFT 758


>gi|307945461|ref|ZP_07660797.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
 gi|307771334|gb|EFO30559.1| Non-motile and phage-resistance protein [Roseibium sp. TrichSKD4]
          Length = 790

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVMQLI 53
            +N   N +     +   + I H++ +P+ AI    +++++            D    + 
Sbjct: 544 ERNRAENANKAK--SEFLANISHELRTPLNAIIGFSDIMNKEMFGPLGTEKYSDYCHDIH 601

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQVS 103
              +    +    + ++    G +                  I         +D    V 
Sbjct: 602 NSGTYLLNVINDILDMSKIEAGRMSIETEDLSAKEAAEDAARIMSTAAREKHIDVTCTVE 661

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +     R   +ILLNL   A    P  G V++     KN   F +   G      + 
Sbjct: 662 DGIQVRADRRALKQILLNLLANAVKFTPEHGTVSLKAHQEKNRICFEISDTGIGIADKDI 721

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++             T     +       L   +  +L           +  LL 
Sbjct: 722 -ARLAQPFVQVENQFTKTHQGSGLGLAIARSLIEIHGGKLEISSELGEGTHVRFLLP 777


>gi|218439644|ref|YP_002377973.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172372|gb|ACK71105.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 873

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           +        ++ +  L S I HD  + +  I  + +LL       +  I+  +  +   +
Sbjct: 490 EAQILRAQRLESLGRLASGIAHDFNNILTPILGASQLLPVLSSQKDESIQKLLTSIETNA 549

Query: 57  SM---SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                     L F R        +  +    ++E  ++        + + +      +  
Sbjct: 550 KRGTELIKQLLSFARGIEVQKNPISLVQLFSELETTLKSVFPKSIEIIIDYPTNLWTILA 609

Query: 114 ER---AKILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKING 155
           +     +++LN+ + A  ++P GG               +            + +    G
Sbjct: 610 DSTQLYQVILNICINARDAMPNGGIITIRGKNFYIDESYQKMYLEAGVGPYIVVTFSDTG 669

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   QI D    +        +    V+ +   +   +      +        L
Sbjct: 670 VGM-TPEVQEQIFDPFFTTKAVGRGSGLGLATVMGIVKNHGGFITVSSQVNKGTQFQVFL 728

Query: 214 E 214
            
Sbjct: 729 P 729


>gi|146282050|ref|YP_001172203.1| sensor/response regulator hybrid [Pseudomonas stutzeri A1501]
 gi|145570255|gb|ABP79361.1| probable sensor/response regulator hybrid [Pseudomonas stutzeri
           A1501]
          Length = 763

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------M 50
            +       +  + A+  L   I HD  + +  I  S ELL +     +          +
Sbjct: 369 RQAEAALRQAQKMEAMGKLTGGIAHDFNNLLAVIGGSFELLRKRLPPSDPRTESLIENGL 428

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q  R  +      L F R       +V     +  + ++++  +  +  + + +  +   
Sbjct: 429 QATRRGAGLVQRLLSFARKQELRPSAVALPDLVIGMRELLKRSVETNISIDLRFPLDLPQ 488

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDS----------KNENIFSLKINGNL 157
              +  ++ + L      A  ++P GG + I  Q                I  ++ +G  
Sbjct: 489 AYVDANQLEMVLINLVVNARDAMPDGGSICIEGQSRTAAEAGRIDAPGYVILIVRDDGIG 548

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE   +  D    +        +       LA ++  RL           +   L 
Sbjct: 549 M-EPEVLARATDPFFTTKGPGNGTGLGLSMAHGLAEQSGGRLQIHSRPGKGTTVEIWLP 606


>gi|94263706|ref|ZP_01287514.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455905|gb|EAT06064.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 706

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 63/231 (27%), Gaps = 21/231 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
            +    S+ DL       + HD+  P+  I+  + LL+            E+M      +
Sbjct: 470 EVELRRSNADLE-QFAYVVSHDLRQPLRMINGYMGLLERALNDKLDDETREMMDFAAGGA 528

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
                 L  +          + +  L   E V E    ++  +  +    ++        
Sbjct: 529 RRMDQMLVSLLEYSRVGRKGEPMAPLASREAVTEALHFLEPEINQTDAKVRLSGQWPEIV 588

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARF--PEKFT 165
               E  ++  NL   A      G    I   V    +   F++K NG        ++  
Sbjct: 589 ASRDEFTRLWQNLIGNALKYRAPGRTPEIDLAVTAKGSFWEFTIKDNGIGIDPAQTDRLF 648

Query: 166 QIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
           ++          +   +       +   +   +  E   D         L 
Sbjct: 649 KVFQRLHTRDKYEGTGVGLAVCRKIVERHGGTITAESEGDGKGTTFRFTLP 699


>gi|37520287|ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
 gi|35211280|dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 856

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 53/224 (23%), Gaps = 31/224 (13%)

Query: 20  SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIR-----------LKFM 67
           + + H+I +P+  +    + LL + G+       I     S                   
Sbjct: 489 ATMSHEIRTPMNGVIGLADVLLADGGLTHRQRDSIETIRASGETLLTIINDILDFSKAES 548

Query: 68  RLAFGYTGSVDSLIGLGDIEQV-----IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                 T   D    L     +      +  + +   +        +  +    +IL+NL
Sbjct: 549 GCIELETKRFDLHALLAGCVDLLRPEATQKHLQLCCTLHGQVPQAVVGDAARLRQILVNL 608

Query: 123 FMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGNLARFPEKFTQIVDGN---- 171
              A      G                   E  F+++  G      E+  ++        
Sbjct: 609 IGNAVKFTTSGAVSVNVTAARPAAEPPQKWELHFAVRDTGIGI-PAERMDRLFKPFSQVD 667

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      +       LA     R+  E         S  +
Sbjct: 668 ASTTRRYGGTGLGLAICKRLAELMDGRIWVESEPGRGSTFSFTI 711


>gi|221311087|ref|ZP_03592934.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221315414|ref|ZP_03597219.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221320330|ref|ZP_03601624.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324614|ref|ZP_03605908.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|1934780|emb|CAB07911.1| sporulation-specific ATP-dependent protein kinase [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 429

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 70/231 (30%), Gaps = 19/231 (8%)

Query: 2   AKNICFN---LSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
           A+NI      + S  +  V+ L + + H++ +P+  +   ++LL                
Sbjct: 195 AENIALRSQLIHSEKMTIVSELAASVAHEVRNPLTVVRGFVQLLFNDETLQNKSSADYKK 254

Query: 50  -----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                +   +    + +   K              +     +     ++ +V    +   
Sbjct: 255 LVLSELDRAQGIITNYLDMAKQQLYEKEVFDLSALIKETSSLMVSYANYKSVTVEAETEP 314

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  + +  + ++NL   +  ++P   G + IS + + +  + ++  NG      + 
Sbjct: 315 DLLIYGDATKLKQAVINLMKNSIEAVPHGKGMIHISAKRNGHTIMINITDNGVGMTDHQ- 373

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +       +   +       +   +   +           ++  L 
Sbjct: 374 MQKLGEPYYSLKTNGTGLGLTVTFSIIEHHHGTISFNSSFQKGTTVTIKLP 424


>gi|330898374|gb|EGH29793.1| PAS protein [Pseudomonas syringae pv. japonica str. M301072PT]
          Length = 417

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--- 55
           +++       S  + A+  L   I HD  + +  I  SLELL     +    +L R    
Sbjct: 28  LSQAEEALRQSQKMEAVGQLTGGIAHDFNNLLTGITGSLELLKTRVSQGRFNELDRYIGA 87

Query: 56  -------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  ++      L F R        VD    +  +E++I   +     V+V  +   
Sbjct: 88  AQDASKRAASLTHRLLAFSRRQTLDPKPVDVNRLVIGMEELIRRTVGPHITVEVVTSVGL 147

Query: 109 IDLSRERAKIL---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSL 151
                +  ++    LNL + A  ++PR                                +
Sbjct: 148 WSTFIDAPQLENALLNLCINARDAMPRGGRITIETANRWIDERGSQSRDLIPGQYLSLCV 207

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              G     PE   +  D    +        +    V     ++  ++      D    +
Sbjct: 208 SDTGTGM-SPEVINRAFDPFFTTKPLGQGTGLGLSMVYGFVRQSGGQVRIYSEPDQGTNM 266

Query: 210 SALLEK 215
              L +
Sbjct: 267 CLYLPR 272


>gi|322806626|emb|CBZ04195.1| sensory transduction protein kinase [Clostridium botulinum H04402
           065]
          Length = 303

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S I HDI +P+ A+   ++LL +  I  E  +            LK +   F     +
Sbjct: 82  MISNISHDIRTPLTALMGYVDLLSDNSITKEKKEEYISIIRERGTALKDLMEEFFQMAKL 141

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLN 121
           +       IE+     +     +                        +      ++I+ N
Sbjct: 142 ECNDIEITIEKFNISEVVRKNIITFMNEINERTITPEINIGDEEIFALGDKNYMSRIITN 201

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   +      G  + I +++       S+   G      E    F ++  G        
Sbjct: 202 LISNSLKYGYEGNVIGIDLKEDNKWITLSIWDKGKGIDKNELPYIFDRLYTGEKSRNRSF 261

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +A      +  + I     + +  + K
Sbjct: 262 QGSGLGLSIVKNMAQHMNGSITAQSIPYEKTIFTVKIPK 300


>gi|318604060|emb|CBY25558.1| aerobic respiration control sensor protein arcB [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 778

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 62/217 (28%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTSFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A     +G  V    ++S +  IF ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGEIVVRVRRESNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  + +       +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSVQGAGSCFTLTIK 504


>gi|307154446|ref|YP_003889830.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
 gi|306984674|gb|ADN16555.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
          Length = 438

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 70/222 (31%), Gaps = 23/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS------------------M 58
              +   H++ SP+  I  S+E++           + + +                    
Sbjct: 216 QFTADASHELRSPLTVIKTSVEVMQTHPERIHPADVEKFNGIVSATKQMSSLVENLLLLA 275

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                       +G     + L  L D  ++  +   ++ + +          S + +++
Sbjct: 276 RTEKISDPYPQEWGLIPLHEVLEDLVDFLELTANAREINLKFEGLIEVFIKGDSEQLSRL 335

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVES- 174
             NL   A    P+GG+VT+S+  ++   + S++  G      + P  F +    +    
Sbjct: 336 FSNLLNNALQYTPQGGQVTVSLNQNERYVLVSVEDTGIGISSAQLPHIFDRFWRADDARC 395

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +       +AH ++  +  +            L K
Sbjct: 396 YRCEGTGLGLAIAQAIAHRHRGEITVKSQLGVGSCFQVRLPK 437


>gi|262165591|ref|ZP_06033328.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
 gi|262025307|gb|EEY43975.1| hypothetical protein VMA_002038 [Vibrio mimicus VM223]
          Length = 1325

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKIEAGKLDVERIDFSLDDVLDNVTAVISLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G  V       + + +   +F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQVMLLFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQEKLSDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|260597103|ref|YP_003209674.1| sensor protein KdpD [Cronobacter turicensis z3032]
 gi|260216280|emb|CBA29230.1| Sensor protein kdpD [Cronobacter turicensis z3032]
          Length = 894

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 64/232 (27%), Gaps = 18/232 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +          L   L + + HD+ +P+  +    E+L                E+ Q 
Sbjct: 651 EEQARLASEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQASEIRQH 710

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107
           +  ++      L   R+  G        + L ++       +          + +S    
Sbjct: 711 VLNTARLVNNLLDMARIQSGGFNLRKEWLTLEEVVGSALKMLEPGLGGRHITLSLSDPLT 770

Query: 108 KIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163
            I +      ++L+NL   A        ++ +      +     +  +G           
Sbjct: 771 LIHVDGPLFERVLINLLENAAKYAGARAQIGVRTGWRDDRLDLEVWDDGPGIPAGQEQAI 830

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +   GN ES I    +       +   +   +      +       LL K
Sbjct: 831 FAKFARGNKESAIPGVGLGLAICQAIVEVHGGEIYARNRPEGGASFHVLLPK 882


>gi|297569478|ref|YP_003690822.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925393|gb|ADH86203.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 639

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 63/240 (26%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        M+ V  L   I HD  + + AI    ++              ++ I  +S 
Sbjct: 253 EEQLRQAQKMESVGTLAGGIAHDFNNLLTAIIGYCQISQLSPSADEALRGNLEQIMAASK 312

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS------ 112
                 + + L      S    + L ++   +E F+       +    E    +      
Sbjct: 313 RGAHLTQGLLLFSRKQSSERKPVDLNEVVVQVERFLQRMIGEDIELRVECCRDALPVLAD 372

Query: 113 -RERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
             +  ++LLNL   A  ++P                                 S+  +G 
Sbjct: 373 AHQLEQVLLNLATNARDAMPTGGIFSLATSLIELDADFVAEHGYGKPGVYARLSVSDSGQ 432

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               PE   ++ +    +        +       +  +++  +      D        L 
Sbjct: 433 GM-SPETSRRVFEPFFTTKEVGQGTGLGLAVAYGIVQQHEGYIQMYSEPDKGTTFRIYLP 491


>gi|257888949|ref|ZP_05668602.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257893832|ref|ZP_05673485.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|257896697|ref|ZP_05676350.1| histidine kinase [Enterococcus faecium Com12]
 gi|257825005|gb|EEV51935.1| histidine kinase [Enterococcus faecium 1,141,733]
 gi|257830211|gb|EEV56818.1| histidine kinase [Enterococcus faecium 1,231,408]
 gi|257833262|gb|EEV59683.1| histidine kinase [Enterococcus faecium Com12]
          Length = 286

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/236 (13%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K+    +  ++    L     S + H+  +P+  I   ++LL    + DE  Q+    
Sbjct: 50  LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQSPNLSDEERQIFLYR 109

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
            + +I +L  +         +++     + ++   D    +  V +    EK  L  +  
Sbjct: 110 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 169

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                         ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 170 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQVNGQIHIKLFETATEIVLEVTDSGVGMNEET 229

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 230 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 285


>gi|289582943|ref|YP_003481409.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
 gi|289532496|gb|ADD06847.1| multi-sensor signal transduction histidine kinase [Natrialba
           magadii ATCC 43099]
          Length = 838

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 22/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
            + +  +   ++  A   S   HD+  P+  + + L+LL+       +   ++ +   + 
Sbjct: 591 QRRLEESNERLEQFAYAAS---HDLQEPLRMVSSYLDLLETRYADELDEDAQEFIDYAVD 647

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            +     +    +  +   T                 +  +    +     +  +     
Sbjct: 648 GAERMRQMINGLLEFSRIETQGEPFEPVDLDEVLEDVMRDLRVKIVENSADISAAELPRV 707

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQI 167
                +  ++  NL   A                D+ +E + S+  NG     P+   QI
Sbjct: 708 AGDGNQLRQVFQNLLSNAIVYSGEEPPEIDIQAHDTGSEWVISVSDNGVGI-DPDDTEQI 766

Query: 168 VDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            I       +   +   +  +         S  L 
Sbjct: 767 FGLFERRHSGGEHTGSGIGLALCERIIERHGGEIWVDSEPGEGATFSFTLP 817


>gi|110634572|ref|YP_674780.1| multi-sensor signal transduction histidine kinase [Mesorhizobium
           sp. BNC1]
 gi|110285556|gb|ABG63615.1| multi-sensor signal transduction histidine kinase [Chelativorans
           sp. BNC1]
          Length = 457

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 66/232 (28%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----LL---------DEVGIEDEV 49
           +     L+ ++ +  + S + H++  P+ AI N ++    LL               DE 
Sbjct: 216 QAELARLARLNELGEMASTLAHELNQPLSAIANYVQGCSRLLKNMDDALASRMREALDET 275

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWT 105
            +    +        +F+          D    + +   +      +          +  
Sbjct: 276 ARQTLRAGQIIRHLREFVTRGETEKQPEDLHKLVEEAGALALVGSRELGVRTVFDFKAGP 335

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFPE 162
              +    +  ++L+NL   A  ++            +Q   +E +  +   G+     +
Sbjct: 336 KVVLVDRVQIQQVLINLMRNAMEAMKESEARELVVRIMQGEGDEAVVEVSDTGSGV-PDD 394

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              Q+    V +      I       +   +   L+ +  +         L 
Sbjct: 395 VVAQLFQPFVTTKPGGMGIGLSISKRIIEAHGGELIMQRNEKGGATFRFTLP 446


>gi|86750000|ref|YP_486496.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Rhodopseudomonas palustris HaA2]
 gi|86573028|gb|ABD07585.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Rhodopseudomonas palustris HaA2]
          Length = 389

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 71/240 (29%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIR 54
           M + +    ++  ++A L + + H+I +P+  I  + +LL++    ++ M          
Sbjct: 127 MDRQLTHRSAARSVIA-LAAMLAHEIKNPLSGIRGAAQLLEQQASSEDRMLTRLICDEAD 185

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---L 111
                      F        G V+    L  ++++ +   A + +    +          
Sbjct: 186 RIVTLVDRMEVFGDDRPVARGPVNIHSVLDHVKRLAQSGFARNIKFVEDYDPSLPPVLAN 245

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----------------ENIFSLKIN 154
             +  ++ LNL   A  ++   G        +                      F +K N
Sbjct: 246 QDQLIQVFLNLVKNAAEAVIDLGSDAEIQLTTAFRPGVRLSVPGKKTRVSLPLEFCVKDN 305

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G      +    + D  V +      +    V  +  ++   +  E           LL 
Sbjct: 306 GPGV-PEDLMPNLFDPFVTTKASGSGLGLALVAKIVGDHGGIIECESQPRK-TTFRVLLP 363


>gi|74318689|ref|YP_316429.1| periplasmic sensor hybrid histidine kinase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74058184|gb|AAZ98624.1| Periplasmic Sensor Hybrid Histidine Kinase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 841

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 58/243 (23%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K +   +      +L      + + H++ +P+  +    +LL E  +  E  +  ++ 
Sbjct: 179 LLKQLHSAVERERKASLAKSSFLANMSHELRTPLNGVIGVADLLAETKLNKEQKEFAQII 238

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRV 100
             SA                        +   D    +     ++E             +
Sbjct: 239 RTSADTLLELIDNVLDISRIEAGRILTSSEDFDLHRVINGTVAMMETQANAKGLVLAAHI 298

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNL 157
                 +    +    ++L+NL   A            V    Q +       +   G  
Sbjct: 299 APQTPFQLQGDAPHLRQVLINLIGNAVKFTEHGRVDVYVRPVGQGNPQRLRLEVVDTGIG 358

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              P+   +I D        +        +       L       +     +        
Sbjct: 359 I-PPDAQIRIFDSFTQADASITRRFGGTGLGTTIAKQLVEAMGGEIGLHSREGEGTTFWF 417

Query: 212 LLE 214
            L 
Sbjct: 418 ELP 420


>gi|54310547|ref|YP_131567.1| nitrogen regulation protein NR(II) [Photobacterium profundum SS9]
 gi|46914990|emb|CAG21765.1| putative nitrogen regulation protein [Photobacterium profundum SS9]
          Length = 357

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 65/232 (28%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +   +  +    A  L   + H+I +P+G +  + +LL++   +    +  ++    A  
Sbjct: 126 SQELSQHAQQQAAKELVRGLAHEIKNPLGGLRGAAQLLEKTLPDPCYTEYTQMIIEQADR 185

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
               +    G          +  I L  + Q++        ++   +     D + +  +
Sbjct: 186 LRNLVDRLLGPQRPGLQKIDNIHIVLEKVRQLVSLDCGEKIKLHRDYDPSLPDFTMDSEQ 245

Query: 118 ILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +   +  +   +                    +  I  +  +      +  +G      E
Sbjct: 246 LEQAILNIVSNAALELQQVSGGNITLKTRTAHQALIQGKRYRIAAKIDIIDDGPGI-PDE 304

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V +      +       L  ++  ++       H    +  L 
Sbjct: 305 IQDTLFYPMVTAREGGTGLGLSIARNLVDQHHGKIEVVSWPGH-TKFTIYLP 355


>gi|37521255|ref|NP_924632.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35212251|dbj|BAC89627.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 453

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 56/220 (25%), Gaps = 23/220 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL-LDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
              +   H++ +P+ A+  ++++ L +           +++    +      +  +    
Sbjct: 212 QFTADASHELRTPLAALQTNVQVALADPQPSVDEYRRSLEVTERLTRRLGRLVADLLFLA 271

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTGEKIDLSRERAKILL 120
              G   +   +      I   +  ++                          +  ++  
Sbjct: 272 RNEGLQSAEGRICCNLTEILQQVVEEQTPLAQAADLAVQLKSGGPLTVTANPDQMHQLFT 331

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
           NL   A    P GG+V +       + +  +   G     PE   +I +           
Sbjct: 332 NLLSNAIRYTPAGGRVCLGTARDGRDALVEVSDTGIGI-APEHLERIFERFWRVDSARTR 390

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   ++  +           L   L 
Sbjct: 391 QAGGSGLGLAIARTIVENHRGEIHALSEPGRGTTLRVRLP 430


>gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 732

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 60/244 (24%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            + +     + +     +   + + H+I +P+  I    EL+ +  ++            
Sbjct: 336 EQALTLKREAEEANTAKSSFLAMMSHEIRTPMNGILGMAELMLDTPLDASQRTYAGNVYN 395

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +     ++      + +          I     +  +    K    R     
Sbjct: 396 GAHHLMRIINEILDFSKVESGYMEIDLTTFDPTRLIGEVIGLHRNGATAKQLQIRTEIAP 455

Query: 114 -----------ERAKILLNLFMVAHASLPRGGKVTISVQDSKN------ENIFSLKINGN 156
                         ++L NL   A    P G      V           +  FS+  +G 
Sbjct: 456 AAALLVSADASRIRQVLGNLINNAIKFTPAGAITVRFVALPDPADATQVQLEFSVADSGI 515

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E   ++ +        +        +       L    +  +  E         S
Sbjct: 516 GI-SAEAQQRLFEPFVQADNTISRKYGGTGLGLAICKRLVELMRGDIRCESDIGAGTRFS 574

Query: 211 ALLE 214
             + 
Sbjct: 575 FRIP 578


>gi|319898572|ref|YP_004158665.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
 gi|319402536|emb|CBI76079.1| two-component sensor histidine kinase [Bartonella clarridgeiae 73]
          Length = 769

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +      S+    +   + + H++ +P+ AI    E++ +            + +   
Sbjct: 529 LQEEKEKAESANKAKSEFLANMSHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYMHDI 588

Query: 57  SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             S    L                  L          +               +     +
Sbjct: 589 HNSGTHLLTLINDILDMSKIEAGRFTLDCKNINLEPIISETIRTLTPQAQAKKISLTTNI 648

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     R   +I LNL   A    P GG + I      N  IFS+K  G      E
Sbjct: 649 EPKLHADVDCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGI-PKE 707

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++             T     +       L   +K +L     +    +++  + 
Sbjct: 708 AIKKLGKPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTITMP 765


>gi|307294607|ref|ZP_07574449.1| histidine kinase [Sphingobium chlorophenolicum L-1]
 gi|306879081|gb|EFN10299.1| histidine kinase [Sphingobium chlorophenolicum L-1]
          Length = 418

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/229 (10%), Positives = 66/229 (28%), Gaps = 24/229 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRL 64
           +  +     +   H++ +P+  I   +E L       +       ++++   +      +
Sbjct: 178 AEKMRVDFVANASHELRTPLAGILGFIETLADPDLGKDDETRQRFLKIMDGEARRMQRLI 237

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRER 115
             +                +VD    + ++  V         + V++    +  D+  +R
Sbjct: 238 DDLISLSRIEAEKYRAPDSAVDLSGLVAEVVGVFRTSHGERGREVEMDIAPDLPDVQGDR 297

Query: 116 AKILLNLFM---VAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKF---TQIV 168
           A++   L      +      G  + +++ D  +     ++   G             +  
Sbjct: 298 AQLSQLLHNLIGNSVKYGKAGTPIRVTLNDGPSGMTRLTVADEGEGIGPDHLPRLTERFY 357

Query: 169 D--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    I    +    V  +   ++ RL           +S LL +
Sbjct: 358 RVDSGRSRAIGGTGLGLAIVKHIVERHRGRLDIASALGKGTAISILLPR 406


>gi|298374865|ref|ZP_06984823.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
 gi|298269233|gb|EFI10888.1| two-component sensor histidine kinase [Bacteroides sp. 3_1_19]
          Length = 572

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 64/213 (30%), Gaps = 20/213 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           S I H++ +PI AI  SL LL++          E     +   S     I  + ++++  
Sbjct: 357 STISHELKTPISAIMMSLRLLEDNRIGKLNTEQESLSKNIKENSDRLLEITGELLKMSQV 416

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124
            +G +     +    ++I+  I  +         +++V +  +   L  +  KI   +  
Sbjct: 417 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKIAKLFVDSEKIAWVVTN 476

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179
               A       G++ I  +         +K  G     R+ E           + +   
Sbjct: 477 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 536

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +           +   +  E            
Sbjct: 537 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 569


>gi|297581589|ref|ZP_06943512.1| nitrogen regulation protein [Vibrio cholerae RC385]
 gi|297534427|gb|EFH73265.1| nitrogen regulation protein [Vibrio cholerae RC385]
          Length = 371

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 136 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPTLMEYTQIIIEQA 194

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 195 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDYDPSLPNILMDT 254

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 255 DQIEQALLNIVSNAAQILANQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 313

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 314 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 366


>gi|255012309|ref|ZP_05284435.1| two-component system sensor histidine kinase, FrrD [Bacteroides sp.
           2_1_7]
          Length = 572

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 64/213 (30%), Gaps = 20/213 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
           S I H++ +PI AI  SL LL++          E     +   S     I  + ++++  
Sbjct: 357 STISHELKTPISAIMMSLRLLEDNRIGKLNTEQESLSKNIKENSDRLLEITGELLKMSQV 416

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVSWTGEKIDLSRERAKILLNLFM 124
            +G +     +    ++I+  I  +         +++V +  +   L  +  KI   +  
Sbjct: 417 ESGKLYLNPKITKPIELIDYAIKANRVQAERFNCQIEVEYPEKIAKLFVDSEKIAWVVTN 476

Query: 125 ---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--RFPEKFTQIVDGNVESTIDSH 179
               A       G++ I  +         +K  G     R+ E           + +   
Sbjct: 477 LLSNAIRYSSENGRIIIGARQIDKAVEIYVKDFGKGIDSRYHESIFDHYFRVPGTKVQGS 536

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +           +   +  E            
Sbjct: 537 GLGLAISKDFVEAHGGTIRIESEVGKGSTFVIR 569


>gi|254822465|ref|ZP_05227466.1| sensor histidine kinase [Mycobacterium intracellulare ATCC 13950]
          Length = 485

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 63/231 (27%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
           A+ +    +S   V    +   H++ +P+ AI    EL     D+     + M  +   +
Sbjct: 246 AEALSARQASETRVRQFVADASHELRTPLAAIRGYTELTQRMGDDREAVAQAMSRVASET 305

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
                 ++ + L               D+ ++  D +            E          
Sbjct: 306 ERMTRLVEDLLLLARLDSGRPLERESVDLSRLAVDAVNDAHVAGPDHQWELDLPEEPVVV 365

Query: 114 -----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFT 165
                   ++L NL   A      G  VT  +    +  +  +  NG         E F 
Sbjct: 366 TGDAARLHQVLTNLLANARVHTGAGTVVTTRLSTEPSHTVLQVIDNGPGIPAALQSEVFE 425

Query: 166 QIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   G+   +       +    V  +   +   +  +         +  L 
Sbjct: 426 RFARGDSSRSRKGGSTGLGLAIVSAVVRAHNGTIAVDSSPGR-TEFTVRLP 475


>gi|229093632|ref|ZP_04224732.1| hypothetical protein bcere0021_43560 [Bacillus cereus Rock3-42]
 gi|228689719|gb|EEL43526.1| hypothetical protein bcere0021_43560 [Bacillus cereus Rock3-42]
          Length = 282

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 57/220 (25%), Gaps = 22/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY---- 73
           + S I HD+ +P+  I    E+L++     +  Q I L  +          +   +    
Sbjct: 60  MLSNISHDLKTPLTVILGYTEMLNKDKTMSKEEQQILLEKVHVKTLEVMELIHKFFDLAK 119

Query: 74  ---------TGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRERA---KILL 120
                       V+      +      D +      V +      I          ++L 
Sbjct: 120 LESGDKAIEMTKVNMNEVCREKILSFYDLVTSKGFHVHIDIPERNIYALGNVEVLGRVLN 179

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-- 175
           N    A      G  + ++++D +      +   G           F ++          
Sbjct: 180 NFISNAITYGDDGKTLGMTLRDDETNVYIDVWDTGKGIDESHIDKVFERMYTLEDSRNRL 239

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +       L      ++          + +  L+K
Sbjct: 240 YQGSGLGLTITKRLVEAMDGKIHLSSKPYEKTIFTVTLKK 279


>gi|298490004|ref|YP_003720181.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298231922|gb|ADI63058.1| GAF sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 640

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 65/228 (28%), Gaps = 27/228 (11%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            L +   + I H++++P+  +      L       +       ++    S    L+ +  
Sbjct: 410 RLRSEFLATISHELLTPLTYVIGMSSTLLLWPLGELSKRQRDYLQTIHDSGEHLLEMIND 469

Query: 70  AFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSR---- 113
               +        L   +             ++E   +    +++         S     
Sbjct: 470 ILDLSQVEAGRTVLNITDFSLVKSAQNTLDSLLEKARSEKVTLKLDLQINPSHDSFTGDS 529

Query: 114 -ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF------PEKFTQ 166
               +IL NL   A    P GG VT+ +       IF ++  G            EKF Q
Sbjct: 530 TRVEQILWNLLTNAIKFTPEGGNVTLRLWVEDATAIFQVEDTGIGIPEEQLPLLFEKFQQ 589

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +         +   +       L   ++ R+  E       + +  + 
Sbjct: 590 LDTPY-RRRYEGTGVGLALTKQLVELHRGRIEVESTVGIGSIFTVWIP 636


>gi|254522090|ref|ZP_05134145.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
 gi|219719681|gb|EED38206.1| Two component regulator three Y motif family [Stenotrophomonas sp.
            SKA14]
          Length = 1168

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 59/244 (24%), Gaps = 32/244 (13%)

Query: 2    AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
                   L   +L            + + H+I +P+  +    ELL    ++ +     +
Sbjct: 783  RHAYQLALHKQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDPQQRGYTQ 842

Query: 55   LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +    L                             L D+  ++    A        
Sbjct: 843  SIRHAGEHLLHLVNDALDLARIESGRLELQQKPFALSCLLQDLAALMGPLAAQKGLRFTL 902

Query: 104  WTG-----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNL 157
                    +    +    +ILLNL   A     RG     +  D +     F ++  G  
Sbjct: 903  DNQLPPGLQATGDAMRVRQILLNLLSNAVKFTSRGTITLHARSDGELRALHFEVRDTGPG 962

Query: 158  ARFPEKFTQIVDGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E+  ++     ++             +       LA   + R+  E          
Sbjct: 963  I-SQEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFG 1021

Query: 211  ALLE 214
              L 
Sbjct: 1022 VTLP 1025


>gi|254463146|ref|ZP_05076562.1| phosphate regulon sensor protein PhoR [Rhodobacterales bacterium
           HTCC2083]
 gi|206679735|gb|EDZ44222.1| phosphate regulon sensor protein PhoR [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 341

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 22/223 (9%), Positives = 58/223 (26%), Gaps = 25/223 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+ AI   +E L      +    D  + ++   S      +  +     
Sbjct: 118 FVANVSHELRTPLTAISGFIETLQGSAKKDEEALDRFLGMMARQSARMDRLVSDLLSLSR 177

Query: 68  ---RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
              +     + +V     L  + +  +           +        + +  ++  NL  
Sbjct: 178 IEAQERQRPSDTVYLHDLLATVIESYKAQDVEIISQLNAHDHAVQADADQLHQVFSNLIE 237

Query: 125 VAHAS-------LPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNV 172
            A                V    +        S+   G        P    +     G+ 
Sbjct: 238 NAVKYGQAGAPITVTTKNVACDARLRVPAIRMSVCDTGAGIDPIHLPRLTERFYRIDGHR 297

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                   +       +   ++ RL  +         +A++ K
Sbjct: 298 SREKGGTGLGLAIAKHIISRHRGRLEIKSKISQGSEFTAIIPK 340


>gi|25011985|ref|NP_736380.1| sensor histidine kinase [Streptococcus agalactiae NEM316]
 gi|24413528|emb|CAD47606.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 551

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 72/230 (31%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAII 62
           ++   L    L     + + H++ +P+  I    ELL    + +E + Q        +  
Sbjct: 321 DVTDQLQMEQLQREFTANVSHELKTPLHVISGYSELLANQMVPNEEVPQFAAKIHKESER 380

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117
            +K +      +   +      +   + +    V + +Q     + I ++    +     
Sbjct: 381 LVKLVEDIISLSHLDEQEKLPQETVNLYDLTQKVLEGLQAKADKKHIQINFNGEEAILRG 440

Query: 118 -------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                  ++ NL   A       G+V +++++S +     +   G      +    F + 
Sbjct: 441 NPVLLNSLVYNLCDNAITYNHEKGQVNVTLKNSPDTITLEVSDTGLGIAEKDKKRIFERF 500

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +  +    +    V      +   +  +        ++ LL K
Sbjct: 501 YRVDKSRSKIVGGTGLGLSIVKSALDFHNGSIKVDSHLGQGTTMTVLLHK 550


>gi|330979424|gb|EGH78085.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 1003

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    + D   +         
Sbjct: 528 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRRALG 587

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 588 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIELNC 647

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I     ++E +F +  +G     
Sbjct: 648 TAAQGLVVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGIGIPV 707

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  +   D   V S  L 
Sbjct: 708 EHLPFIFQRYWSVKEGNPRGNGLGLYICQGIVTAHGGRLWADSSLDSGSVFSFTLP 763


>gi|323700071|ref|ZP_08111983.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio sp. ND132]
 gi|323460003|gb|EGB15868.1| integral membrane sensor signal transduction histidine kinase
           [Desulfovibrio desulfuricans ND132]
          Length = 473

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 64/219 (29%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAII 62
               L  +  + + + H+I +P+G I +S EL+      E      +++ +   +     
Sbjct: 255 QQEKLAGMGRMVAGVAHEIRNPLGIICSSSELVLKKARKENSSNVRILEALHEEAKRLSR 314

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGEKIDLSRER 115
            +                + +  I   +  F+  +                         
Sbjct: 315 TVTEFLDYARPKKPAMHDVDIRSILDQVAVFMEPECEKLGVTVDRDFDGDLTTKGDKDLL 374

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +   NL   A  ++   G+++IS    +     ++  +G     PE   ++ D    + 
Sbjct: 375 YRAFYNLVANALQAMNGPGELSISAARGEKGLHVTIMDSGPG-FAPENLDRVRDPFFTTK 433

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +   +     ++    +  +  
Sbjct: 434 DTGTGLGLALVSTIFESHGAEMALSNAEEGGARVDVIFP 472


>gi|320334454|ref|YP_004171165.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319755743|gb|ADV67500.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 874

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 63/233 (27%), Gaps = 23/233 (9%)

Query: 2   AKNICFNLSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLI 53
             N     S+ +L   A + S   HD+ +P+ A+ +  +L+     +         +  I
Sbjct: 643 RSNEELRRSNQELEQFAYIAS---HDLQAPLRAMTSFADLIARKYADRLDARGQVYLGQI 699

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109
             S       +  +      T    ++        +      +   +  +          
Sbjct: 700 AQSGKHMKRLVDDLLAFSRVTTEERTVQPTDSGAVLDGVLERMRVEMDAAGGQVDRAALP 759

Query: 110 ---DLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLAR--FPE 162
                + +  ++  NL   A      G    + V+         F+++ NG      + E
Sbjct: 760 TVLIGAGQLDQLFQNLVGNALKYHRPGVPPRVRVRAAPDGPLWHFTVQDNGIGIEPAYFE 819

Query: 163 KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  +I          +   +       +   +  +L  +            L 
Sbjct: 820 RVFEIFQRLHTREQYEGTGVGLAICKKIVERHGGQLWLDSTPGEGSTFHFTLP 872


>gi|322433181|ref|YP_004210402.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321165573|gb|ADW71275.1| multi-sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 544

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 15/221 (6%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           L +  L A   + S + H++ +P+ AI N L LL  +  +   +  +  +          
Sbjct: 318 LQAEKLAAAGRMASTLAHEVNNPLEAITNLLYLLRPLVTDIAGINYLTTAESEIARVSHI 377

Query: 67  MRLAFGYTG---------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
            +   G+             +       I +       +            +    E  +
Sbjct: 378 AKQTLGFYREYTTASPISLSELAQDAIKIYEPRCALKGIQILTSFQSDKILVLRRVEIMQ 437

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           ++ NL   +  ++P GG +++SV+D+ +E  I  ++  G                     
Sbjct: 438 VISNLITNSMYAMPSGGVLSLSVEDAASEGVIVIVQDTGVGIAAQNLPKMFEAFFTTRNA 497

Query: 177 DSHDIQFYYVILLAHENKIRLLPEII---DDHNVVLSALLE 214
               I  + V      +  R+  E     DDH   +   L 
Sbjct: 498 IGTGIGLFVVKNFVEGHGGRIEVESSQGMDDHGTSVRIYLP 538


>gi|229522299|ref|ZP_04411715.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM
           11079-80]
 gi|229340284|gb|EEO05290.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio cholerae TM
           11079-80]
          Length = 857

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQAARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTPLNDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------- 108
           S    L  +     ++        +   E  +++ +    R+      EK          
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFRLKELVCAIDRIYRPLCNEKGLELVVNSNI 583

Query: 109 ------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                         +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TTAAIVRSDQIRINQILFNLLNNAIKFTHQGSIRVELQLIEGDPLAQLVIQVVDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDLTV-IFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGIGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|229527327|ref|ZP_04416719.1| nitrogen regulation protein NR(II) [Vibrio cholerae 12129(1)]
 gi|229334959|gb|EEO00444.1| nitrogen regulation protein NR(II) [Vibrio cholerae 12129(1)]
          Length = 354

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 119 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQA 177

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 178 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDYDPSLPNILMDT 237

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 238 DQIEQALLNIVSNAAQILANQTHGLITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 296

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 297 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 349


>gi|298530453|ref|ZP_07017855.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509827|gb|EFI33731.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1112

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 60/237 (25%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S     +   + + H+I +PI  I  +L++L     +     L+ ++  SA 
Sbjct: 571 AKEQAEKASMAK--SEFLANMSHEIRTPISGIIGALDMLASESADQSRKDLVDMTLESAR 628

Query: 62  IRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +                 +        S+   +      Q     IA+         
Sbjct: 629 SLEQIINDILDLSKVEAGKLDLVHEDFSLRSLVRRVLGLYSIQARNQGIALKVDADSRLP 688

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161
                 +    ++L NL   A      G  +     + + + K    F ++ +G      
Sbjct: 689 EYVRGDAHRLEQVLRNLVSNAVKFTQAGHVLIRVKAMDIDEHKATVEFQVEDSGEGISGD 748

Query: 162 EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +                    +       L       +  +       V S  L
Sbjct: 749 FLPSLFDSFTQADITYGKKHQGSGLGLAISQRLVQMMGGEIQVQSTPGRGSVFSFAL 805


>gi|221198638|ref|ZP_03571683.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221181089|gb|EEE13491.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 763

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 21/230 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
               +S  L   L + + H++ +P+  I+  +E+L   G +   +Q I     SA    +
Sbjct: 381 EQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDTLRVQAIDAIDRSARSLTR 440

Query: 66  FMRLAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
            +      +             +  +     V+  F        ++   E    +     
Sbjct: 441 MVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFESRVATCIVSG 500

Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++L NL   A    P GG VT+SV       + ++   G               
Sbjct: 501 DAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAPEFVPHVFDMF 560

Query: 171 NVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                          +    V  +   +   ++ +    +     +  L 
Sbjct: 561 RRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 610


>gi|218708183|ref|YP_002415804.1| nitrogen regulation protein NR(II) [Vibrio splendidus LGP32]
 gi|218321202|emb|CAV17152.1| Nitrogen regulation protein ntrB [Vibrio splendidus LGP32]
          Length = 358

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ +  +        LL   + H+I +P+G +  + +LL ++  +  + +  ++    A
Sbjct: 127 LSQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLGKMLPDQSLNEYTQIIIEQA 185

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +    L  + Q++E        ++  +     D+  + 
Sbjct: 186 DRLRALVDRLLGPQKPGTKSEENLHQILEKVRQLVELESGSTLVIERDYDPSLPDILMDS 245

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           A++   +  +   +                    +  I  Q  K      +  NG     
Sbjct: 246 AQVEQAMLNIVSNAAQILKAQESGKITIRTRTVHQANIHGQRHKLAARIEICDNGPGI-P 304

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V        +       L  ++  ++  E    +    +  L 
Sbjct: 305 DELKDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGN-TTFTIYLP 357


>gi|218231364|ref|YP_002367928.1| sensor histidine kinase [Bacillus cereus B4264]
 gi|218159321|gb|ACK59313.1| sensor histidine kinase [Bacillus cereus B4264]
          Length = 436

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    +V+    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASVEITTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESKLGEGSTFTFKLP 431


>gi|189197047|ref|XP_001934861.1| signal transduction histidine-protein kinase barA [Pyrenophora
           tritici-repentis Pt-1C-BFP]
 gi|187980809|gb|EDU47435.1| signal transduction histidine-protein kinase barA [Pyrenophora
           tritici-repentis Pt-1C-BFP]
          Length = 1326

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 726 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 785

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 786 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 845

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 846 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQECGPDHYVFQFAVSDTG 905

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 906 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 965

Query: 211 AL 212
             
Sbjct: 966 FT 967


>gi|150007677|ref|YP_001302420.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256839938|ref|ZP_05545447.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|149936101|gb|ABR42798.1| putative two-component system sensor histidine kinase
           [Parabacteroides distasonis ATCC 8503]
 gi|256738868|gb|EEU52193.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 364

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 51/229 (22%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +     S  L +   + I H+I  P+ AI     LL +    +   + I L   + 
Sbjct: 129 MEERMLKAEKSERLKSSFLANISHEIRMPLNAIVGFSSLLGDEEDGELRQEYINLIQTNN 188

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS---WTG 106
            +                          D    + +     +  +     +       + 
Sbjct: 189 ELLLGIVNDVLDLAKLESGTMTFDFMEFDLRQLIVETVASFQIKVPRGVALTYPASLDSF 248

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     ++L N    A      G  +       +NE + S+   G       K   
Sbjct: 249 LLRSDRIRLKQVLGNFITNAIKYTSIGSIILSYQAM-ENEVLLSVTDTGEGMSEEIKLHV 307

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +       +      R+               L 
Sbjct: 308 FDRFYKGRNQKQGIGLGLSICQNIIERLGGRIGVSSEQGKGSCFWCTLP 356


>gi|154252800|ref|YP_001413624.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
 gi|154156750|gb|ABS63967.1| PAS/PAC sensor signal transduction histidine kinase [Parvibaculum
           lavamentivorans DS-1]
          Length = 902

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 61/240 (25%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEV 49
                  L+   L         A L + I H++  P+ AI  +       L       E 
Sbjct: 659 RTQEELRLAQDRLARASHAAGLAELSASIAHEVNQPLAAIVANSHACHHWLSAEPANMER 718

Query: 50  MQLI-----------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
            ++                       K        T     +  + ++         V  
Sbjct: 719 AKITVERIIRDANGAADIVSRIRALFKQSTETRVVTPLSSVITEIRELLTDEVTRRRVHM 778

Query: 99  RVQV-SWTGEKIDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKIN 154
            V +            +  ++L+NL      ++   P   ++ + V+  ++     L  +
Sbjct: 779 EVDIADGLPPIALDRVQIQQVLINLIRNGMEAMGSVPGRRELRLRVRFIEDAIRVELSDS 838

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G      E   +I +    +      +       +   +  RL  E    H       L 
Sbjct: 839 GPGI---ELSEKIFEPFFTTKERGMGMGLAICRSIVESHGGRLWAENNTPHGATFVFALP 895


>gi|83814181|ref|YP_446380.1| PAS domain-containing protein [Salinibacter ruber DSM 13855]
 gi|294508317|ref|YP_003572375.1| PAS domain S-box protein [Salinibacter ruber M8]
 gi|83755575|gb|ABC43688.1| PAS domain S-box protein [Salinibacter ruber DSM 13855]
 gi|294344645|emb|CBH25423.1| PAS domain S-box protein [Salinibacter ruber M8]
          Length = 1155

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 61/237 (25%), Gaps = 23/237 (9%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSS 57
            M         +  + ++  + + H+I +P+ +I    E + +         V++  +L  
Sbjct: 909  MLAAKEEAEDANRMKSVFLANMSHEIRTPLTSIIGFAEAIGDELGDETAGPVLRFAQLIE 968

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSWT 105
             S    L+ +      +      + L               +Q      A    +     
Sbjct: 969  KSGNRLLETLDGVLNLSKLEAGEMDLTIEPVNLAVQTAETADQFAPQAQASGISLHTDLD 1028

Query: 106  GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               +    +      +L NL   A      GG+V + V+D+    + +++  G      +
Sbjct: 1029 DAPVWARADEGAVHIVLRNLISNAIKYTNEGGEVEVQVRDAGTAAVMAIEDTGIGMNPEQ 1088

Query: 163  KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                               +   +               +  E            L 
Sbjct: 1089 VTDLFEAFRQASEGLGREYEGTGLGLAVTKQAVDHMNGSIDVETEKGVGTRFVVRLP 1145


>gi|298674344|ref|YP_003726094.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
 gi|298287332|gb|ADI73298.1| multi-sensor signal transduction histidine kinase [Methanohalobium
           evestigatum Z-7303]
          Length = 837

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 61/244 (25%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELL------DEVGIED 47
            K    NL +  L A   S         + H++ +P+ +I    ++L      D    + 
Sbjct: 592 QKEAEENLINAKLEAEAASQAKSDILANVNHELRTPLTSIIGFSDVLLKGKAGDLNESQK 651

Query: 48  EVMQLIRLSSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIA 95
             +  +  +    +  +  +                  +           I+  + + + 
Sbjct: 652 MYLSRVHNNGKHLLDLITDILDLSKIESGKSGLNYERISIIELVNDLKEYIQPFVSNKVL 711

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           +      S          +  +IL NL   A      G       Q+  +   FS+   G
Sbjct: 712 ILHSRVDSGLNYIYADYIKIKQILSNLLYNAVKFTEEGSITLEVSQNEDD-VQFSVIDTG 770

Query: 156 NLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                             D           +    V  L + +  ++  E         +
Sbjct: 771 IGIPKGSHEAIFDSFKQLDSGPARKYQGTGLGLALVNKLVNMHGGQIWVESEIKKGSRFT 830

Query: 211 ALLE 214
             + 
Sbjct: 831 FTIP 834


>gi|295398525|ref|ZP_06808559.1| two component sensor histidine kinase [Aerococcus viridans ATCC
           11563]
 gi|294973248|gb|EFG49041.1| two component sensor histidine kinase [Aerococcus viridans ATCC
           11563]
          Length = 618

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 60/227 (26%), Gaps = 23/227 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFMRL 69
             + +   S   H++ +P+ A+    E L +      D  ++ +++    +      ++ 
Sbjct: 377 EKVRSDFISNASHELKTPVTALQGFTEALLDGAIEDHDTAVEFVKIMQKESNRLGSLIKD 436

Query: 70  AFGYTGSVDSLI------------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
                      +                 + +          +      +     R    
Sbjct: 437 ILDLAKIEQDQVQQTTELLEADELVEDVFQHLSGRAQDKHINLVKDDNSQPDVSFRGERG 496

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD- 169
              ++L NL   A       G V + + + +N   F +  NG      +    F +    
Sbjct: 497 RILQVLTNLIHNAIIYNNPYGFVKVFISEQENMIQFKISDNGIGIPQEDLPRIFERFYRV 556

Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +      +    V  +       +  + +       +  + K
Sbjct: 557 SKDRSTASGGTGLGLSIVRNILEHMGGGIEVDSVFGRGTSFTVYIPK 603


>gi|293556319|ref|ZP_06674902.1| sensor histidine kinase [Enterococcus faecium E1039]
 gi|291601519|gb|EFF31788.1| sensor histidine kinase [Enterococcus faecium E1039]
          Length = 347

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + K+    +  ++    L     S + H+  +P+  I   ++LL    + DE  Q+    
Sbjct: 111 LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEERQIFLYR 170

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
            + +I +L  +         +++     + ++   D    +  V +    EK  L  +  
Sbjct: 171 VIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 230

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++ LN+   A       GK+ I + ++  E +  +  +G       
Sbjct: 231 LAAVNYTGNEKFLYQVWLNIMDNAIKYNQVNGKIHIKLFETATEIVLEVTDSGVGMNEET 290

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 291 KDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 346


>gi|261210249|ref|ZP_05924545.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio sp. RC341]
 gi|260840593|gb|EEX67149.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio sp. RC341]
          Length = 497

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLA---- 70
           L + + HD+ +P+GAI  S   L +  +    +   +L+   +       + +       
Sbjct: 273 LLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQRELLTSIAEQGERLNRSLTKLLDIT 332

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        V+    +G +   +   +   K    S        S    ++L+NL 
Sbjct: 333 RYTASALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIESQPMLVELDSLLIEQVLINLV 392

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHD 180
             A    PRG ++ I+      +   ++  NG      E   +I D       +  D   
Sbjct: 393 ENAAKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PNEALPRIFDRFYRVEGNHADGTG 451

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      ++   ++  +     +      +  + 
Sbjct: 452 LGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|159028848|emb|CAO90653.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 455

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 68/229 (29%), Gaps = 21/229 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSM 58
               +S + +   L S I H+  +P+  I ++ +LL+      +   +  + ++     +
Sbjct: 226 QEKEISDLKI--QLFSMISHEFRTPLTVILSASQLLENGLRDADQSSKKNLYRIQSSVKL 283

Query: 59  SAIIRLKFMRLAF-------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                   + L              +D      ++ +  +     +  ++    G  I  
Sbjct: 284 MNQFLTDILILTRAESGNLSCQLEPLDIEAFCLNLVEDFQFINKNNTPIKFVSQGLMIRP 343

Query: 112 SRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFT 165
             +   +   L      A    P G  +++ +    +  +F ++ +G      +    + 
Sbjct: 344 YLDEKLLYSILSNLLLNAIKYSPTGAGISLILWKDSDRIVFQVQDHGIGIAEEDRGKIYE 403

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               G     I    +    V      ++  +  +   D     +  L 
Sbjct: 404 PFYRGQNVENIIGTGLGLAVVKKCVELHRGEIALDSQVDKGTSFTVKLP 452


>gi|158340839|ref|YP_001522007.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
 gi|158311080|gb|ABW32693.1| two-component hybrid sensor and regulator [Acaryochloris marina
            MBIC11017]
          Length = 1549

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 62/241 (25%), Gaps = 30/241 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
            +        ++ +  L S I HD+ + +  I+   +LL     +         ++++  +
Sbjct: 1155 EKQFLRAQRLESIGALASGIAHDLNNILTPIYGVAQLLPLQLPNASEQIQHQFEILQTCA 1214

Query: 58   MSAIIRLKFMRLAFGYT-------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                  +  +                   L  L D                         
Sbjct: 1215 QRGSKLITQVLSFSRGADGERAILYIKPLLSELRDFTLKTFPKSIEVSTHIPDDLWSIHA 1274

Query: 111  LSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKING 155
             + +  ++ +NL + A  ++P GG ++I   +                    + ++   G
Sbjct: 1275 DATQVHQVFMNLLVNARDAMPEGGSLSIHAMNFPLDEALAADFLNAQAGPYILITVTDTG 1334

Query: 156  NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 PE   QI +    +        +    V  +   +   +               L
Sbjct: 1335 IGI-PPELQEQIFEPFFTTKEPEGGTGLGLSTVNKIIQSHHGFITVYSEVGQGTQFKVYL 1393

Query: 214  E 214
             
Sbjct: 1394 P 1394


>gi|16265272|ref|NP_438064.1| C4-dicarboxylate transport sensor protein [Sinorhizobium meliloti
           1021]
 gi|17380400|sp|P13633|DCTB_RHIME RecName: Full=C4-dicarboxylate transport sensor protein dctB
 gi|15141412|emb|CAC49924.1| C4-dicarboxylate transport sensor protein [Sinorhizobium meliloti
           1021]
          Length = 621

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLD----------EVGIEDE 48
           +       + +  L     + + + H+I  P+  I    +                  + 
Sbjct: 390 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLHRGQTVTAAENMES 449

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           + +L            +F R      G       +     +    F      +++    +
Sbjct: 450 IAELTERVGAITDELRRFARKGHFAAGPTAMKEVVEGALMLLRSRFAGRMDAIRLDLPPD 509

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
            +          ++L+NL   A  ++       I V+  +       ++  NG      +
Sbjct: 510 GLQALGNRIRLEQVLINLLQNALEAIGDSEDGAIQVRCEEAAGGIALTVADNGPGI-AAD 568

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++      S  D   +       +  +    +  E         +  L+K
Sbjct: 569 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVESGP-SGTTFAVNLKK 620


>gi|87308220|ref|ZP_01090362.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
 gi|87289302|gb|EAQ81194.1| ammonium/methylammonium permease [Blastopirellula marina DSM 3645]
          Length = 1259

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 59/229 (25%), Gaps = 31/229 (13%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKF------ 66
           +   + + H+I +P+  +   L+LL        +   ++L + S+ S +  +        
Sbjct: 595 STFLASMSHEIRTPLNGVIGFLDLLHTTKLDDQQGRFVELAKSSASSLLHLINDILDLSK 654

Query: 67  -------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  +         +   +      Q     + ++  V        I       ++L
Sbjct: 655 IEAGGIELEQTEFVLTDLIESVPEMFAPQCRMTGLELNSSVATDVPQAAIGDCERIRQVL 714

Query: 120 LNLFMVAHASLPR--------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +NLF  A                +   S  D+     FS++  G       K  ++    
Sbjct: 715 VNLFANAVKFTETGGVYLRVERERSVASSHDAIARIRFSVEDTGIGVPRS-KMQRLFKAF 773

Query: 172 ------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +     +       L       +  E            L 
Sbjct: 774 SQVDASTTRSYGGTGLGLAICKQLVELMGGEIGVESEVGKGSTFWFTLP 822


>gi|315647497|ref|ZP_07900601.1| heavy metal sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
 gi|315277121|gb|EFU40459.1| heavy metal sensor signal transduction histidine kinase
           [Paenibacillus vortex V453]
          Length = 382

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 60/228 (26%), Gaps = 20/228 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRL 55
           M   +  +  +        +   H++ +P+  I   +++L            E + +   
Sbjct: 148 MLDRLNRSFENQK---QFAANAAHELKTPLTTIKAGIQVLKMDEAPSVNDYKENIDITEQ 204

Query: 56  SSMSAII-----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           S+   I                +   +     + DI   +  FI            E   
Sbjct: 205 STERLIKVVDDLLNLNSTKNEHFADEIALQEVIEDILNELSIFIDERNIAVSFENCEHTF 264

Query: 111 LSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +  +    + L NL   A      GG++ I+ +  +   +  +   G      E      
Sbjct: 265 IGNKSLIHRALYNLIENAVKYNGSGGRIQINSEMIETVILIHISDTGMGIADDELPNIFE 324

Query: 169 DGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                       I    +    V  +  ++K ++            S 
Sbjct: 325 PFYRVDKSRSREIAGSGLGLAIVKSIVEKHKGQVSVRSEQGVGTTFSL 372


>gi|307823177|ref|ZP_07653407.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
 gi|307735952|gb|EFO06799.1| multi-sensor signal transduction histidine kinase [Methylobacter
           tundripaludum SV96]
          Length = 900

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 23/223 (10%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLE------------LLDEVGIEDEVMQLIRLSSMSAI 61
           L+  + S I H+I  P+ AI +  +            L+    I  +  Q    +     
Sbjct: 671 LMGEMASGIAHEINQPLAAISSYTQVSLNLINTEHPDLVKLAEILYKTQQQALRAGRIIH 730

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRERAK 117
              +F++       + +    + +   +  D +  +         +          +  +
Sbjct: 731 RMREFVKSHAKQRSTANINNLIHEAVGLCIDELKQNDIRLTFELTNNLPTIYVDHVQIEQ 790

Query: 118 ILLNLFMVAHASL------PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           +++NL   +  +L       +      S     N+    +K NG      E+   I+   
Sbjct: 791 VIINLIRNSVDALLNLPEKRQRQLTIHSRLTLNNDIQVRVKDNGPGL-DEEQQQNILTPF 849

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  D   +       L   ++  L           +   L 
Sbjct: 850 YTTKTDGMGMGLSISRSLIEAHEGTLHFNSHSGKGTTMYFTLP 892


>gi|291548406|emb|CBL21514.1| Signal transduction histidine kinase [Ruminococcus sp. SR1/5]
          Length = 451

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 26/232 (11%), Positives = 69/232 (29%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSA 60
            + +     + ++     + + H++ +P+ +I    EL+       D + +        +
Sbjct: 213 RQQVKELKEAEEIRKEFSANVSHELKTPLMSISGYAELMMNGMVPADHIREFSGRIYHES 272

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGD------------IEQVIEDFIAVDKRVQVSWTGEK 108
           I     +      +   +S   +                 +       +  ++++ + EK
Sbjct: 273 IRLSNLVADIIQLSRLDESNSEVPFEEVDLYELAEDVRNNLRHPAGKKNIFLELAGSAEK 332

Query: 109 IDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
           I   R    ++L N+   A     + G V I V + K    + +  +G      E    F
Sbjct: 333 IKGVRHVLYEMLFNIADNAVRYTEQNGHVRIMVGNRKGHPFYCVADDGIGIPKSEQGRIF 392

Query: 165 TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +           +    V   A  +  ++  E        +  +  
Sbjct: 393 ERFYRVDKSHSRQTGGTGLGLSIVKHGATLHHAQINVESEQGVGTRMEIVFP 444


>gi|289548272|ref|YP_003473260.1| multi-sensor signal transduction histidine kinase [Thermocrinis
           albus DSM 14484]
 gi|289181889|gb|ADC89133.1| multi-sensor signal transduction histidine kinase [Thermocrinis
           albus DSM 14484]
          Length = 639

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 79/228 (34%), Gaps = 17/228 (7%)

Query: 1   MAKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVM 50
           + K + + LS    +++   +   I H + +P+ +I  S E+L           +   ++
Sbjct: 399 LQKEMEYVLSRHVRLNIAGEIAVSIAHQLNNPLASILASAEVLMSRLQDDTLKPLVQRIV 458

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
                +S +    L       G    V+       +  ++           +    +   
Sbjct: 459 DNTARASQTVRKLLDISGSKDGSPSKVNPATLTEGVVDMMLYKARKKGVKLEYVNFLKEN 518

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  +IL+NL   A    P+GG V +++++ +   ++S+K +G      +   
Sbjct: 519 ITLFCYPWKLEQILMNLVDNAIDETPQGGYVRVTLEEVRGGLVWSVKDSGKGV-REDILD 577

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +I +    + ++ + +    V     +   R+      D       +L
Sbjct: 578 RIFEPFFTTKVEGYGLGLSIVKRFVEDMGGRVEVINHPD-GAEFRVIL 624


>gi|283781401|ref|YP_003372156.1| histidine kinase [Pirellula staleyi DSM 6068]
 gi|283439854|gb|ADB18296.1| histidine kinase [Pirellula staleyi DSM 6068]
          Length = 501

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 70/222 (31%), Gaps = 24/222 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           A   S + H++ +P+ +I   +ELL     ++    +E +++I   +      +  +   
Sbjct: 274 AEFVSAVSHEMKTPLSSIRAYVELLADDEAEDDATREEFLKVIESQTDRLQRLIDNLLNL 333

Query: 71  FGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KI 118
                 V ++  L              +       +  +    +   + +  +R    + 
Sbjct: 334 ARIEAGVVAVQKLPQSLNELLGEAVNLLQPAAQQKNITLSSELSPMYLGVLADRDTLLQA 393

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST--- 175
            +NL   A      GG V +  + + ++ +F +  +G      +   ++ +         
Sbjct: 394 AINLISNALKYTQPGGSVQVRSRLAASDVVFEVTDSGVGL-SEDDCKRVFEKFYRVKKDR 452

Query: 176 --IDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALLE 214
                  +    V  +  + +  R+  E           +L 
Sbjct: 453 EMASGTGLGLPLVKHIVEDIHNGRVEVESKLGEGSTFRLVLP 494


>gi|238754107|ref|ZP_04615465.1| Osmolarity sensor protein envZ [Yersinia ruckeri ATCC 29473]
 gi|238707603|gb|EEP99962.1| Osmolarity sensor protein envZ [Yersinia ruckeri ATCC 29473]
          Length = 432

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 67/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      S + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 198 TRAFNQMASGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMAEEDGYLSESINKDIEE 257

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   +    LG++      +    +                
Sbjct: 258 CNAIIEQFIDYLRTGQEMPTEMSELNAILGEVIAAESGYEREIETDLCDEEVLVEVHPLS 317

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  E    F   V G+
Sbjct: 318 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEELKHLFQPFVRGD 375

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     D   + + A L 
Sbjct: 376 SARSTSGTGLGLAIVQRIIDAHSGMLDIGTSDKGGLRIRAYLP 418


>gi|227893255|ref|ZP_04011060.1| possible histidine kinase [Lactobacillus ultunensis DSM 16047]
 gi|227864938|gb|EEJ72359.1| possible histidine kinase [Lactobacillus ultunensis DSM 16047]
          Length = 485

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 68/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + ++     +         +   H++ +P+  I+  LE L         + + + L++  
Sbjct: 240 LKQSNEEVKAQEKRRDQFMADAAHEMRTPLTTINGILEGLQYDAIPEESKPKSIALMQHE 299

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I                + L      +V  L  L               +V     
Sbjct: 300 TKRLIRLVNENLDYEKIRNNQIMLYKVNFNAVPVLHDLRSQLMQNAKKANDQLQVVAPDE 359

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
            E         +I++NL   A       GK+ I  Q  ++   FS++ NG      +   
Sbjct: 360 VEVYADRDRFTQIMVNLIQNAIQFT-HDGKIKIISQRLEHGAQFSVQDNGIGMDEKQMKF 418

Query: 163 KFTQIVDGNVESTIDSHD---IQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            F +    +            +    V  L  ++  ++  +   +   +    L
Sbjct: 419 IFERFFKADPSRARLGTGESGLGLSIVSSLVKQHGGKIEVKSEPEKGSIFIVTL 472


>gi|218778156|ref|YP_002429474.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759540|gb|ACL02006.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 866

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 65/244 (26%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVM 50
            K +   L  +  + ++  L   I HD  + +  I    E+L E   E          + 
Sbjct: 479 RKTVEERLRQAQKMESIGHLAGGIAHDFNNLLFPIVGMAEILMEDLPEGSPEFENAQVIF 538

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +  +         L F R        V     L ++  +    I     ++     +   
Sbjct: 539 ESGKRGGELVKQILAFSRQTEHKMSPVRIQQVLKEVLNLTRATIPSFIEMEAQIQWDCGM 598

Query: 111 LSRE---RAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLK 152
           +  +     ++ +N+   A  ++ +                     S  DS    + S+ 
Sbjct: 599 ILADATQIHQVAMNIITNAFHAVEQNGGKITVNLKEILIDEEDGEYSAIDSGRYALMSIS 658

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG      +   +I +    +        +       L   +K  +            +
Sbjct: 659 DNGPGM-PSDLINRIFEPYFTTKEQGKGTGLGLAVAYGLIKAHKGDIRVYSEPGKGTAFN 717

Query: 211 ALLE 214
             L 
Sbjct: 718 VYLP 721


>gi|254225460|ref|ZP_04919071.1| nitrogen regulation protein [Vibrio cholerae V51]
 gi|125622094|gb|EAZ50417.1| nitrogen regulation protein [Vibrio cholerae V51]
          Length = 354

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 72/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 119 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPTLMEYTKIIIEQA 177

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E   + +   +  +     ++  + 
Sbjct: 178 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEASANLVFERDYDPSLPNILMDT 237

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 238 DQIEQALLNIVSNAAQILANQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 296

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 297 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 349


>gi|67920227|ref|ZP_00513747.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67857711|gb|EAM52950.1| Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 758

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 65/242 (26%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQ 51
           +   +  + ++    +     + H++ +P+  I      L              + + + 
Sbjct: 372 LRDTLIASQAANHSKSEFLGNMSHELRTPLTCIIGLSGTLLHWSQEGLNLPVDKQRKYLD 431

Query: 52  LIRLSSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
            I+ S    +  +  +                Y         +        +   ++  +
Sbjct: 432 TIQNSGKHLLDMINEILEYSNLQSGKYVLSVRYFSLTKVAKNVMQRVSDESEHRRINLEL 491

Query: 101 QVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
            +    +K   S +     +IL +L   A     + GKVT+ V   KN+    ++  G  
Sbjct: 492 DLQIEPQKDSFSADPERVQQILYHLLNNALKFTSKNGKVTLRVWLEKNQLCLEVEDTGIG 551

Query: 158 ARFPEK---FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F                  +       L   +   +  E I +     +  
Sbjct: 552 IEEEKIPLLFESFQQLENSRRRVYGGTGLGLALTKQLVELHGGTIEVESIINKGSTFTVR 611

Query: 213 LE 214
           + 
Sbjct: 612 IP 613


>gi|65320485|ref|ZP_00393444.1| COG0642: Signal transduction histidine kinase [Bacillus anthracis
           str. A2012]
 gi|165868801|ref|ZP_02213461.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|190564809|ref|ZP_03017730.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227813978|ref|YP_002813987.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
 gi|254685762|ref|ZP_05149621.1| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066]
 gi|254723171|ref|ZP_05184959.1| sensor histidine kinase [Bacillus anthracis str. A1055]
 gi|254738232|ref|ZP_05195935.1| sensor histidine kinase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254742600|ref|ZP_05200285.1| sensor histidine kinase [Bacillus anthracis str. Kruger B]
 gi|254752547|ref|ZP_05204583.1| sensor histidine kinase [Bacillus anthracis str. Vollum]
 gi|254761063|ref|ZP_05213087.1| sensor histidine kinase [Bacillus anthracis str. Australia 94]
 gi|164715527|gb|EDR21044.1| sensor histidine kinase [Bacillus anthracis str. A0488]
 gi|190564126|gb|EDV18090.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
 gi|227003507|gb|ACP13250.1| sensor histidine kinase [Bacillus anthracis str. CDC 684]
          Length = 436

 Score =  109 bits (271), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESGLGEGSTFTFKLP 431


>gi|240138281|ref|YP_002962753.1| putative sensor hybrid histidine kinase with PAS and two responser
           regulator receiver domains [Methylobacterium extorquens
           AM1]
 gi|240008250|gb|ACS39476.1| putative sensor hybrid histidine kinase with PAS and two responser
           regulator receiver domains [Methylobacterium extorquens
           AM1]
          Length = 695

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 74/239 (30%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            K +  +L  +  L A+  L   I HD  + +  +  +L+L+              +  +
Sbjct: 307 RKELELSLQHASKLEAVGRLTGGIAHDFNNMLSIVIGNLDLVKSSLSGNEKALRRIESAI 366

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     +      L F R +     ++D    +  + +++E  +     +         +
Sbjct: 367 EGAHRCAELTSRLLAFSRRSPLQPRALDFTSFIPGLIKLLERTLGERIAISADLEDGLPE 426

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK----------NENIFSLKINGNL 157
           +  + A+    L      A  ++P GG + I ++  +          +    ++  +G  
Sbjct: 427 VCVDHAQFEAALINLAVNARDAMPDGGTLGIRIKRHEAVAQEDSEQVHSVEIAVTDSGTG 486

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P    ++ +    +        +    V     ++   +  +   D        L 
Sbjct: 487 M-SPAILARVFEPFFTTKEAGKGTGLGLSMVYGFVQQSGGTIAVDSNPDQGTRFVITLP 544


>gi|229084428|ref|ZP_04216708.1| hypothetical protein bcere0022_10680 [Bacillus cereus Rock3-44]
 gi|228698968|gb|EEL51673.1| hypothetical protein bcere0022_10680 [Bacillus cereus Rock3-44]
          Length = 403

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-----RLSS 57
           +    N     L+  + + I H+I +P+ +    L+LL      +E  +L          
Sbjct: 176 QEELINAEKFHLIGEMAASISHEIRNPLTSTKGFLQLLQSENCSEEERKLYTDIAINSIE 235

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115
            +  +   ++  +         L    ++   +     +     V     K   +     
Sbjct: 236 QANRVLTDYLTFSKPSIEKEQILQIEEELLHAVSLITPLANLTNVQINYAKQSNNFYISG 295

Query: 116 -----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 + LLN+      ++P GG + +++  +      S+K  G      E+  ++   
Sbjct: 296 EKQKLNQCLLNILKNCIEAMPEGGNLILTLIPNHKHIQLSIKDTGIGM-DSEQIKRLGAP 354

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +    V  +      ++      D          
Sbjct: 355 FYSTKEKGTGLGMMVVFSIIKAMDGKINITSERDIGTTFLLTFP 398


>gi|218703681|ref|YP_002411200.1| phosphate regulon sensor protein [Escherichia coli UMN026]
 gi|293403517|ref|ZP_06647608.1| phoR [Escherichia coli FVEC1412]
 gi|298379129|ref|ZP_06989010.1| phoR [Escherichia coli FVEC1302]
 gi|300900463|ref|ZP_07118631.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 198-1]
 gi|331661772|ref|ZP_08362695.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA143]
 gi|218430778|emb|CAR11652.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli UMN026]
 gi|284920206|emb|CBG33265.1| phosphate regulon two-component system, sensor kinase [Escherichia
           coli 042]
 gi|291429370|gb|EFF02390.1| phoR [Escherichia coli FVEC1412]
 gi|298280242|gb|EFI21746.1| phoR [Escherichia coli FVEC1302]
 gi|300356032|gb|EFJ71902.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 198-1]
 gi|331060194|gb|EGI32158.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA143]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|254482471|ref|ZP_05095710.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
 gi|214037162|gb|EEB77830.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [marine gamma proteobacterium HTCC2148]
          Length = 983

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
           M       L +  L ++  L + + H+I +P+  I    + L   ++        Q I  
Sbjct: 739 MEVMEEELLHNERLASIGRLAAGVAHEIGNPVTGIACLAQNLAYAEDPAEVALTAQDILK 798

Query: 56  SSMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +      ++ +                     D +     +  +  +   V        
Sbjct: 799 QTDRVTRIVESLVNFSHIGSSAQGLELAPCNLADCIDESIHLLALDREAQQVRFSNHCDR 858

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +  S+   ++ +NL   A  +    G V I         +  +  NG+     E  
Sbjct: 859 ELVVLADSQRLLQVFVNLLANARDACDEDGHVQIQAYRDDARVLVDVDDNGSGI-PAELQ 917

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLL----PEIIDDHNVVLSALLE 214
           +QI +    +        +    V  +  +    +      +         +  L 
Sbjct: 918 SQIFEPFFTTKDPGAGTGLGLALVYSIMEDLGGSIQLTSPLQSEPRPGTRFTLQLP 973


>gi|209528133|ref|ZP_03276607.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
 gi|209491421|gb|EDZ91802.1| PAS/PAC sensor hybrid histidine kinase [Arthrospira maxima CS-328]
          Length = 665

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 72/237 (30%), Gaps = 28/237 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAI 61
                  ++ +  L S I HD+ + +  I  S+++     +   ++++++LI  ++    
Sbjct: 285 QLLRAQRLESIGTLASGIAHDLNNILTPILASVQMFQLGLDQEKQNKMLKLIENNTKRGA 344

Query: 62  IRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115
             +K    F +   G          + ++  +  +       V  + + E   +  +   
Sbjct: 345 HLIKQVLSFAKGFEGKLEIFQVRHLISEVADIARETFPKSINVSTNVSKELWTVYGDPTQ 404

Query: 116 -AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLAR 159
             +IL+NL + A  ++P               +               + ++   G    
Sbjct: 405 LHQILMNLCVNARDAMPGGGNLSLSASNVILNQKEARLNLDAREGCYVMITVSDTGTGI- 463

Query: 160 FPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I +    +        +    V+ +   +   +  +            + 
Sbjct: 464 TQEVLDRIFEPFFTTKEFAKGSGLGLSTVLGIVKGHNGFIDVDTQMGCGTTFRVYIP 520


>gi|197103592|ref|YP_002128969.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
 gi|196477012|gb|ACG76540.1| sensor histidine kinase [Phenylobacterium zucineum HLK1]
          Length = 586

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 57/220 (25%), Gaps = 21/220 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H+I +P+  +    + +    +     + + +   S  + L  +      + 
Sbjct: 210 SEFLATMSHEIRTPLNGVLGMAQAMAHDPLPRRQRERLEVIRQSGEVLLVLLNDLLDISK 269

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWTGEKIDLSRERAKIL 119
              + + L      + D  A  +                       G     +    +IL
Sbjct: 270 IEAAKLELDLAPLDLHDLAAQAQEAFAPLAASKDLELSVRAAPELAGAWRADATRVRQIL 329

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDG--NVES 174
            NL   A     RG        D+  + +  ++  G           F + V    +   
Sbjct: 330 YNLLANAVKFTERGAVAADLFLDAAGQVVLRVRDTGPGVAPERLDALFERFVQAEASTTR 389

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       LA      +  +         + +L 
Sbjct: 390 RYGGSGLGLAISRDLARLMGGDIAAQSTPGAGSTFTVILP 429


>gi|261408285|ref|YP_003244526.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261284748|gb|ACX66719.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 369

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 60/239 (25%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  N               + I HD+ +P+  I     LL     E    + I       
Sbjct: 125 LQANEAERTQIEQAKQEWIAGISHDLKTPLTYIKGYSALLLNEQYEWSKEEAISFIREMD 184

Query: 61  II------------RLKFMRLAFGYTGSVDSLIGLGDI-----EQVIEDFIAVDKRVQVS 103
                          +  +  A G    + +   + +        +  +  A +  +   
Sbjct: 185 DKGKHMEELIQDLSLVTQLNRADGALPLLKANQDIVEFTKRVVADISNNPQASNYLLHFQ 244

Query: 104 WTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                + +  +     +IL N+ + +    P   ++ + + D+       +  NG     
Sbjct: 245 TDSSAMHVDFDAKYMQRILQNIMINSIIHNPEFTEIFVRITDAGEFAAIRITDNGIGMPA 304

Query: 161 PEKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +      +   +    V  L   +   +  E         +  L K
Sbjct: 305 DTVAHLFQQYYRGTTTDAASEGTGLGMAIVYKLIQAHDGTITVESKPSQGTTFTIRLPK 363


>gi|189467251|ref|ZP_03016036.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
 gi|189435515|gb|EDV04500.1| hypothetical protein BACINT_03637 [Bacteroides intestinalis DSM
           17393]
          Length = 536

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 60/229 (26%), Gaps = 16/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +  L +   + + H+I +P+ +I     +L      +E  +  +L   + 
Sbjct: 289 LREAKEKAEEANRLKSAFLANMSHEIRTPLNSIVGFSSILTMTEDMEEKKEYNQLIQHNN 348

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + LK                +L   +    D ++      ++  D     +  +     
Sbjct: 349 TLLLKVVDDVLELSKLEAGDFKLYPAWFCLSDLVVESAAECRMKADGKLDVRVDKPEQDY 408

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                ++   +IL N    A  +    G + I+          S+K  G      +    
Sbjct: 409 MVELDAQYVKRILSNFLSNALKNTQS-GHIDIAYSMVDGGVKISVKDTGCGIPQDKLPVV 467

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +      +       +A      +               L 
Sbjct: 468 FDRFEKVDSFAQGVGLGLPICKSIAESMGGTIGVTSEVGAGTAFWVTLP 516


>gi|209886245|ref|YP_002290102.1| sensor protein FixL [Oligotropha carboxidovorans OM5]
 gi|209874441|gb|ACI94237.1| sensor protein FixL [Oligotropha carboxidovorans OM5]
          Length = 507

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 62/236 (26%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQ-- 51
           M +     +    L A+  + S + H++  P+ AI N ++     L  +       ++  
Sbjct: 262 MQELQSELVHVSRLTAMGEMASALAHELNQPLAAISNYMKGSRRLLAADTEENRHKIESA 321

Query: 52  ------LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSW 104
                     +        +F+           +   + +   +           +    
Sbjct: 322 MDRAAEQAIRAGQIIRRLREFVSRGESEKRVEKASKLIEEAGALGLTGAREQGVSLHFHL 381

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV------QDSKNENIFSLKINGNLA 158
             +   +  +R +I   L  +   +L    +           + + +    ++   G+  
Sbjct: 382 DPDHDLVLVDRVQIQQVLVNLFRNALDAMTESAQRTLVVTSTRATNDMIEIAVSDTGHGI 441

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E   ++      +  +   +       +   +  R+  E            L 
Sbjct: 442 -GKEHQPRMFQTFFTTKKNGMGVGLSISRTIVEAHGGRMWTENNPAGGATFRFTLP 496


>gi|144900553|emb|CAM77417.1| signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 569

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 62/235 (26%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIR 54
           AK+    LS+ +L         HD+  P+  I    +LL+           ++ +  ++ 
Sbjct: 331 AKSHDLALSNAELQEY-AYAASHDLQEPVRTIIGFAQLLERRYRGQMGPEADEFIAFIVE 389

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------DKRVQVSWTGEK 108
            +          +  A    G     I   D                    V++      
Sbjct: 390 GAERMRRQINDLLSYARLGRGEPVQEIVDMDKVAAEAVQALAAAIASSGAMVEIEPLPMV 449

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKF 164
                  +++L NL          G    I V   +    N   F ++ +G     PE  
Sbjct: 450 KGGRDALSRLLQNLMANGLKFTKPGEVAHIRVSAMEGSDPNWAEFIVRDHGIGI-APEYH 508

Query: 165 TQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I             +   I       +   +  R+  E           LL K
Sbjct: 509 DRIFRMFERLHPRGQYEGSGIGLAICRKVVEMHGGRIWVESQLGEGTAFHFLLPK 563


>gi|126726843|ref|ZP_01742682.1| Nitrogen regulation protein, NtrB signal transduction histidine
           kinase [Rhodobacterales bacterium HTCC2150]
 gi|126703801|gb|EBA02895.1| Nitrogen regulation protein, NtrB signal transduction histidine
           kinase [Rhodobacterales bacterium HTCC2150]
          Length = 358

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 60/219 (27%), Gaps = 24/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           +   + H+I +P+  I  + +LL      D+  + D ++Q  R          +F  +  
Sbjct: 132 MAEMLAHEIKNPLAGIMGAAQLLAMNISNDDQEMTDLIVQECRRILKLLGQVEEFGNVRP 191

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
                V+    L    ++ +   A   R+   +         +  ++      +   +  
Sbjct: 192 PDRQPVNLHDVLDRTRKLAQVGFAAHMRIIEDYDPSLPHSFGDSDQLQQVFMNLLKNAAE 251

Query: 132 RGGKVTISVQDSKN----------------ENIFSLKINGNLARFPEKFTQIVDGNVEST 175
              K       +                       +  +G      E    I D  +   
Sbjct: 252 ANPKGGTIRIKTSYEMSLRVLNKDGTGSAVPLHVEIIDDGPGL-PAEIADDIFDPFISGR 310

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +    V  +  +++  +  + +     V    L 
Sbjct: 311 ENGTGLGLALVSKIVSDHEGWITVDSVPGK-TVFKLSLP 348


>gi|219847195|ref|YP_002461628.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219541454|gb|ACL23192.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 391

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 74/240 (30%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMD------LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQL 52
           +A+++     ++D      L   L + + H++ +P+  I   +E L +           L
Sbjct: 135 LAQSVNQLADALDQTERRRLA--LLADVTHELRTPLATIGGYMEGLVDGVVSANPATFNL 192

Query: 53  IRLSSMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           I   +      ++ +                ++D    + +     E   + ++   +  
Sbjct: 193 ILRETRRLQRLIEDLELLSRVEAGQLPVIARAIDLRPVIEEQIAQFEPLFSSNQVNLILD 252

Query: 105 TGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA-- 158
             E++          A++L+N+ + A    P GG VT+ V+   +E   ++   G     
Sbjct: 253 MPEQVPQVWADPDRVAQVLINILVNACRYTPPGGSVTVQVRVDDHEVRVAVIDTGIGIAA 312

Query: 159 -RFPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
              P  F +    +           I       L +     +  E             L 
Sbjct: 313 EHLPHVFERFYRVDKSRARNSGGSGIGLAIARHLIYAQGGEIWAESDGLGKGARFIFTLP 372


>gi|120611809|ref|YP_971487.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
 gi|120590273|gb|ABM33713.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
          Length = 750

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 62/242 (25%), Gaps = 32/242 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIR 54
              +   L  S  + A+  +   I HD  + + AI  ++EL            E ++ I 
Sbjct: 346 RNELEAQLRESHKMQAVGTMAGGIAHDFNNILSAILGNVELAKADCAAGSPVLESLREIE 405

Query: 55  LSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            +   A   ++ +             V     + D E+++   +     +++        
Sbjct: 406 KAGRRARDLVRQILTFSRNEPPRRTAVPVAEAIHDTERLLRVTLPPAIELRLQLDRHLPA 465

Query: 111 LSRERAKILLNLFMVAHASLP------------------RGGKVTISVQDSKNENIFSLK 152
           +  +  ++   L  +   ++                                     S+ 
Sbjct: 466 MLADATQVEQALLNLCTNAIHAIGDARGTVCVEASAVQPDHRLCERLALPHGEYVAISVV 525

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG       +  +I +    +        +    V  +   +   +  +         +
Sbjct: 526 DNGPGIDPATQL-RIFEPFFTTKPVGQGTGLGLAVVHGVMRTHGGAVDVQSAPGEGSRFT 584

Query: 211 AL 212
             
Sbjct: 585 LF 586


>gi|77166465|ref|YP_344990.1| Signal transduction histidine kinase, NtrY [Nitrosococcus oceani
           ATCC 19707]
 gi|76884779|gb|ABA59460.1| multi-sensor signal transduction histidine kinase [Nitrosococcus
           oceani ATCC 19707]
          Length = 712

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 58/231 (25%), Gaps = 26/231 (11%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE--------------VGIEDEVMQL 52
           + +    A   +  R+ H+I +P+  I  S E L                  +   ++  
Sbjct: 470 VQAQRNAAWGEVARRLAHEIKNPLTPIQLSAERLRRKYLKLLPTDQIQPLDRLTHTIIAQ 529

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--D 110
           +           ++ R       S+D    + ++ ++                       
Sbjct: 530 VEAMKEMVNAFSEYARNPALQQQSLDFNSLVKEVLELYRGDENKLYIETQLAPQPLWLLA 589

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGNLARFPEK 163
                 ++L NL   A  ++    K       ++             +   G     PE 
Sbjct: 590 DPSRLRQLLHNLLKNALEAMANSPKTPHITVQTRYREDKKREWVELQIIDQGPGI-PPEL 648

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  + +  V +      +    V  +  E    +           L   L 
Sbjct: 649 YQNLFEPYVSTRPKGTGLGLAIVKRIVEEQGGHVAARNPPGGGACLIIQLP 699


>gi|330448474|ref|ZP_08312122.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492665|dbj|GAA06619.1| his Kinase A domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 576

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 63/217 (29%), Gaps = 24/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR---------------- 63
           + I H++ +P+  +  S ELL +  ++   ++L+   + S  +                 
Sbjct: 219 AMINHELRTPLNGLLGSAELLHDTSLDTHQLKLLTTLNHSGELLRAIINDLLDYSKINAG 278

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           +  +      +  + + +      +  E  +  +           I       +I +NL 
Sbjct: 279 MLELIEKPFDSHLLATKLEDIFTHKANEKRLDFNIYYAPDLPAALIGDEDRIKQIFVNLI 338

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A       G V   +     +  FS++ +G      ++  ++     +       + +
Sbjct: 339 SNAIKFTSD-GFVHAKLWWEDQKLQFSVRDSGCGIDQADQH-KLFKPFSQVDITSKRSHE 396

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L  +    +  E            L 
Sbjct: 397 GTGLGLVICKQLCEQMGGSIRVESSLGRGACFQISLP 433


>gi|295688134|ref|YP_003591827.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295430037|gb|ADG09209.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 633

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 56/227 (24%), Gaps = 26/227 (11%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--- 70
           L +   + + H+I +P+  +    E++D   ++    + + +   S  + L  +      
Sbjct: 249 LKSHFLANMSHEIRTPLNGVLAMAEVMDMDDLKPAQRERLAVIRESGGLLLAVLNDVLDL 308

Query: 71  --------FGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAK 117
                          D       I +             +  V     G          +
Sbjct: 309 SKIEAGRLEIQDRPFDIAQLAQSIRESYAPQAREKGLAFEVAVAPEAHGLWRGDVDRLRQ 368

Query: 118 ILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGN----- 171
           IL NL   A      G         +  +     +   G     PE   ++ D       
Sbjct: 369 ILGNLISNALKFTLEGAVAVRFASAEDGSGLRIDVADTGIGI-APEILPRLFDKFVQADS 427

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LEK 215
                     +       LA      +  +  +      + L  L +
Sbjct: 428 STTRRFGGSGLGLAICRELAALMGGSIKVQSREGRGSTFTVLVALPR 474


>gi|163739314|ref|ZP_02146725.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
 gi|161387384|gb|EDQ11742.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis BS107]
          Length = 764

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 51/227 (22%), Gaps = 29/227 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------L 64
           A L   + H+I +P+  +    ELL +  + DE          S                
Sbjct: 218 AFLA-NMSHEIRTPMNGVVGMAELLSDTNLSDEQQLYANTIKNSGEALLVIINDVLDYSK 276

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKIL 119
              +    +    D    + ++  +++               +      +       ++L
Sbjct: 277 IEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGRIRQVL 336

Query: 120 LNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            NL   A      G         S           +++  G      +      + N   
Sbjct: 337 TNLVGNAVKFTSEGHVALQITGISNAGDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVE 396

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LE 214
                  +   +       L       +  E  +           L 
Sbjct: 397 DERNRQFEGTGLGLAISKRLIELMGGEIWVESQEGKGSCFGFRMELP 443


>gi|163750679|ref|ZP_02157915.1| nitrogen regulation protein [Shewanella benthica KT99]
 gi|161329523|gb|EDQ00515.1| nitrogen regulation protein [Shewanella benthica KT99]
          Length = 361

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 63/217 (29%), Gaps = 21/217 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-----LAF 71
            L   + H+I +P+G +  + +LL     + E+ +   +    A      +         
Sbjct: 143 YLVRNLAHEIKNPLGGLRGAAQLLSRELHDPELHEFTDMIIEQADRLRNLVDRLLGPQKP 202

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS-- 129
                 +    +  +  ++   +  + + +  +     D++ +  ++   +  +   +  
Sbjct: 203 SQHTLQNIHQVIQKVLTLVTMTLPENIQFKQDYDPSIPDINMDPEQLQQAVLNIVQNAVQ 262

Query: 130 ------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
                            +VTI  Q  K     S+  NG     PE    +    V     
Sbjct: 263 ALEGIGGNITIKTRTQHQVTIGTQRHKIVIALSIIDNGPGI-KPELMDTLFYPMVTGRAQ 321

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +        A  +  R+  +         + LL 
Sbjct: 322 GSGLGLSISHNFARLHGGRIDCQSKPGE-TEFTILLP 357


>gi|160940332|ref|ZP_02087677.1| hypothetical protein CLOBOL_05222 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436912|gb|EDP14679.1| hypothetical protein CLOBOL_05222 [Clostridium bolteae ATCC
           BAA-613]
          Length = 489

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 61/240 (25%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL- 55
           +++++  +LS +  V        S + H++ +PI +I    + L  +      +    + 
Sbjct: 239 LSQSVQKSLSKLKAVDQSRQEFVSNVSHELKTPITSIRVLADSLMGMEDVPVELYREFMT 298

Query: 56  ----SSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                       ++ + +                V+    L  I + +           +
Sbjct: 299 DISDEIDRENQIIEDLLMLVKMDKTAEDQMNIEQVNINGELELILKRLRPIAKRGNVELI 358

Query: 103 SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
             +  ++    ++ KI L +      A       G V +++          +   G    
Sbjct: 359 LESIREVTADVDKVKISLAITNLVENAIKYNRDSGMVRVTLDADHKYFYIKVADTGIGIP 418

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                +    +       +   +   +  E         S  + 
Sbjct: 419 EDALEHIFERFFRVDKARSREVGGTGLGLAIAKNVIQMHHGIIDVESTVGEGTTFSVRIP 478


>gi|156740373|ref|YP_001430502.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156231701|gb|ABU56484.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 383

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 68/227 (29%), Gaps = 22/227 (9%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK 65
                 L   L + + H++ +P+  I   +E L +     +++   LIR  +       +
Sbjct: 144 RTEQRRLA--LIADVAHELRTPLTTIEGYMEGLLDGVIAPDEQTFTLIRHEAARLRRLTE 201

Query: 66  FM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +           R+          L  L    Q       VD +++++     +    +
Sbjct: 202 ELGLLSRAEAGELRVQPRVFDVCPLLQELVARFQPQFSACEVDLQLRLTVPSLDLYADPD 261

Query: 115 R-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
           R  ++++NL   A    P GG V +S+  S      S++  G           F +    
Sbjct: 262 RLMQVMVNLLSNALRYTPSGGLVEVSLTLSGEYARISVRDTGIGIEAEHLPLIFERFYRV 321

Query: 171 N--VESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
           +           I       L + +   +  E             L 
Sbjct: 322 DKSRTRHSGGTGIGLTIARHLVYASGGEIWAESDGIGKGATFHVTLP 368


>gi|153940755|ref|YP_001391587.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|152936651|gb|ABS42149.1| sensor histidine kinase [Clostridium botulinum F str. Langeland]
 gi|295319615|gb|ADF99992.1| sensor histidine kinase [Clostridium botulinum F str. 230613]
          Length = 303

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S I HDI +P+ A+   ++LL +  I  E  +            LK +   F     +
Sbjct: 82  MISNISHDIRTPLTALMGYVDLLSDNSITKEKKEEYISIIRERGTALKDLMEEFFQMAKL 141

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLN 121
           +       IE+     +     +                        +      ++I+ N
Sbjct: 142 ECNDIEITIEKFNISEVVRKNIITFMNEINERTITPEINIGDEEIFALGDKNYMSRIITN 201

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   +      G  + I +++     I S+   G      E    F ++           
Sbjct: 202 LISNSLKYGYEGNIIGIDLKEDNKWVILSIWDKGKGIDKNELPYIFDRLYTEEKSRNRNF 261

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +A      +  + I     + +  + K
Sbjct: 262 QGSGLGLSIVKNMAQHMNGSITAQSIPYEKTIFTVKIPK 300


>gi|123401570|ref|XP_001301889.1| ATPase [Trichomonas vaginalis G3]
 gi|121883123|gb|EAX88959.1| ATPase, putative [Trichomonas vaginalis G3]
          Length = 1378

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 58/238 (24%), Gaps = 24/238 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +     + +     L  + + H+I +P+  I   L+++ +  I  E   L+      +
Sbjct: 885  LEEQRKIAVEANKQKTLFLANMSHEIRTPMNPIFGLLDIIAQGEITGEQRLLVDTMRSLS 944

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------W 104
               LK +      +      + +          I        S                +
Sbjct: 945  FQLLKLLDDTLNLSKIEQGDMEMNVATFDFWAAIEPAIVASASRARKDGIKFIVRSSPKF 1004

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE---NIFSLKINGNLARFP 161
              +         +IL NLF  A     +G          + +      ++   G    + 
Sbjct: 1005 PLKINHDVHLIQQILNNLFSNALKFTKKGFIELAVSWAEEEDQEVIRIAVSDTGIGISYD 1064

Query: 162  EKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++                      +    V  + H     L  E            + 
Sbjct: 1065 QQKIIFQRYFQADPSNPVHYGGSGLGLALVQEIVHFIGGSLRLESEPGKGSTFLIDIP 1122


>gi|189424781|ref|YP_001951958.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189421040|gb|ACD95438.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 1007

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 56/244 (22%), Gaps = 35/244 (14%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L S    A           + + H+I +P+  I     LL    I  E    +
Sbjct: 608 RKQAEQQLRSAKEAAEAANSAKSAFLANMSHEIRTPMNGIIGMTHLLQTTVITPEQEHYL 667

Query: 54  RLSSMSAIIRLK----------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
                SA                      +  +          +      Q+    + V 
Sbjct: 668 ENIENSANSLTTLISDILDLSKIESGKLELEYSDFSLRRCIRELLASQQFQIQHKELMVQ 727

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKI 153
             +  +             +ILLNL   A     +G     +   ++ +       S+  
Sbjct: 728 TDIADNVPDILRGDQLRTRQILLNLIGNAIKFTEQGSIAITARLVAQQDDLALIRLSISD 787

Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            G      +   +I          +        +       L      R+  E  + +  
Sbjct: 788 TGIGMSPQQV-DRIFAPFEQADNSITRKYGGSGLGLAICQRLIELMGGRIWAESTEGNGS 846

Query: 208 VLSA 211
               
Sbjct: 847 SFHI 850


>gi|86750625|ref|YP_487121.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
 gi|86573653|gb|ABD08210.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris HaA2]
          Length = 627

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 61/238 (25%), Gaps = 28/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+       +    +   + + H++ +P+ A+    +++          +  +  +    
Sbjct: 362 ARAEAGRADATK--SRFLATMSHELRTPLNAVIGFSDMILHEDELMLAPERRKEYAQLIN 419

Query: 62  I------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                               +  +  + +       +           +   +       
Sbjct: 420 DSGQHLLSVVNGILDMSKIESGHFEIAPEPFAPRPALLNCCNLLALKARENGIDLVTRAP 479

Query: 110 DL-------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +         R   +ILLNL   A     RGG V++         +  +   G      +
Sbjct: 480 ENLPEIVGDPRAFKQILLNLVSNAIKFTERGGTVSVDAMVEGARLVLRVSDTGVGIAAED 539

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I D         +   +   +    V  L   +   +  +   D    ++  L 
Sbjct: 540 LK-RIGDPFFQAGTTYQRRHEGTGLGLSIVKSLVGMHGGDIEVKSEVDRGTTVTVSLP 596


>gi|77461060|ref|YP_350567.1| sensor protein PilS [Pseudomonas fluorescens Pf0-1]
 gi|77385063|gb|ABA76576.1| putative two component sensor kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 529

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 61/219 (27%), Gaps = 20/219 (9%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKF-- 66
           + L AL  L + I H+I +P+GAI ++ +LL E   ++    +L ++    +    +   
Sbjct: 305 LKLAALGRLTAGIAHEIRNPLGAISHAAQLLQESEELDSADRRLTQIIQDHSQRMNRVIE 364

Query: 67  -----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 R        +D    L        +     + + +           +  ++   
Sbjct: 365 NVLQLSRRQQSAPQRLDLKPWLEQFVNESRERSGERQHIHLHIGLGDFRTLMDPGQLTQI 424

Query: 122 LFM---VAHASLPRGGKVTISVQ-----DSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L                                 +  ++ NG      ++   + +    
Sbjct: 425 LDNLLRNGWRHSALLHDPAEVWMTLFIDPESTLAVLEVQDNGPGVPL-DQQAHLFEPFFT 483

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           ++     +  Y    L   N+ RL  +            
Sbjct: 484 TSSQGTGLGLYLSRELCESNQARLDFKSRQGGG-CFRIT 521


>gi|51245370|ref|YP_065254.1| Ntr family two-component system sensory/regulatory protein
           [Desulfotalea psychrophila LSv54]
 gi|50876407|emb|CAG36247.1| related to two-component system sensory/regulatory protein (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 930

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 61/239 (25%), Gaps = 30/239 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLIRLSSMSA 60
               + +  + A+  L   I HD  + + AI    EL  L+        ++ I  +S  A
Sbjct: 552 QEQLVQAQKMEAIGTLAGGIAHDFNNVLAAILGYAELAKLNAPLSSTHELEQIIKASNRA 611

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-------SR 113
            + ++ +             +  G   +     +       +                  
Sbjct: 612 KVLVRQILDFSRQADIEKISLMPGPRIKEALKMLRSSLPSTILIEQNIDMDSGPILGDPT 671

Query: 114 ERAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKINGNL 157
           +  ++L+NL   +  ++                       I+           ++  G+ 
Sbjct: 672 QLHQLLMNLCTNSFHAMEERGGVISVSLRKKTLSKADIGNIANVHPGPFVQLDIRDGGSG 731

Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +I +    +        +    V  +   +   +  E       + S  L 
Sbjct: 732 ISLA-IQEKIFNPYFTTKDVGKGTGMGLSIVHGIVKNSGGFITCESKVGEGTLFSVNLP 789


>gi|150389091|ref|YP_001319140.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149948953|gb|ABR47481.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 516

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 72/244 (29%), Gaps = 30/244 (12%)

Query: 1   MAKNICF---NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----------EVGIED 47
           M +        L    L A   S I H+  +P+  I  +++L++          E    +
Sbjct: 238 MDEKQQLLVRALEQEKLQAEFFSNISHEFKTPLNVILGTVQLVEHYNRSNLSELEPRQLN 297

Query: 48  EVMQLIRLSSMSAIIRLKFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           + + +++ +    +  +  +           +  Y       I     +  +        
Sbjct: 298 KCIHIMKQNCYRLLRLINNLIDITKLDFDSFSIKYKNYNVIHILEEITQSTVALAEIKGI 357

Query: 99  RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            +      E+  ++ +     +I+LNL   A      G  + + V   +   + S+K  G
Sbjct: 358 SITFDTDVEEKIIACDINILERIMLNLISNAIKYSEVGSDINVMVCGQEESLLISVKDTG 417

Query: 156 NLARFPE---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +    F + V  +       +   I    V     +    +  +   D+     
Sbjct: 418 MGIPENQLSAIFDRFVQIDDSLPKKTEGSGIGLSLVKEFVEKLNGEISVKSKVDYGSEFV 477

Query: 211 ALLE 214
             L 
Sbjct: 478 IKLP 481


>gi|94314228|ref|YP_587437.1| sensor histidine kinase [Cupriavidus metallidurans CH34]
 gi|93358080|gb|ABF12168.1| sensor histidine kinase with GAF domain [Cupriavidus metallidurans
            CH34]
          Length = 1744

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 1    MAKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDE 48
            +A  +    +  +L           L + I H++  P+ AI  S++     L+       
Sbjct: 1496 LAAEMGLRSARAELARTSHLTVMGTLAASIAHEVNQPLTAIVASVDASLRWLNRATPNLG 1555

Query: 49   VMQ-----------LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
             +Q                  +     +            + L  + D+ ++      V 
Sbjct: 1556 EVQDGLAHIRKNGLRAAEIIRALRALARQTPSVMTPLQPDEVLSEVLDMVRMEIAGHGVR 1615

Query: 98   KRVQV-SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLK 152
                + +          +  +++LNL   A  ++         +         + +  ++
Sbjct: 1616 VSTSLSTGGALVAADRVQLQQVMLNLITNAIDAMATTPPDARDLVIASALENADVVIRVE 1675

Query: 153  INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              G       +  ++ D  + S      +       +   +   L     D    V +  
Sbjct: 1676 DAGRGIPDAMR-QRLFDPFITSKQSGMGMGLAICKSIVEAHGGELDAAPRDGGGTVFTFR 1734

Query: 213  LE 214
            L 
Sbjct: 1735 LP 1736


>gi|333010840|gb|EGK30266.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-272]
 gi|333021339|gb|EGK40592.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-227]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|330878193|gb|EGH12342.1| sensor histidine kinase [Pseudomonas syringae pv. morsprunorum str.
           M302280PT]
          Length = 355

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIH---------NSLELLDEVGIEDEVMQL 52
           A++    ++ ++ +  L + I H++  P+ AI           + E ++       V ++
Sbjct: 117 ARSQLAQIARVNQLGELAASIAHEVNQPLSAIVISGNACQRWLAAEPVNLEKARQAVERM 176

Query: 53  IRLSSM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105
           I  ++             K       +    D++  +  +     D   V   V+V    
Sbjct: 177 IGDANRAGDIIVRVRALAKRSSTYKEWISVADTVAEIVALAHSEIDAQGVALTVEVPEGL 236

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARF 160
              +    +  ++LLNL +    ++ +                  +  F+++ NG     
Sbjct: 237 PPLLADRVQIQQVLLNLMLNGVDAMSKVETDHAQLEIRVDWREGGDIGFAVRDNGIGV-P 295

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ D    +  +   I       +   +  R+               L 
Sbjct: 296 ADNTDRLFDAFYTTKQEGMGIGLAISRSIIEAHGGRIWVTPNPSIGATFHFTLP 349


>gi|327480298|gb|AEA83608.1| sensor/response regulator hybrid [Pseudomonas stutzeri DSM 4166]
          Length = 763

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 72/239 (30%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------M 50
            +       +  + A+  L   I HD  + +  I  S ELL +     +          +
Sbjct: 369 RQAEAALRQAQKMEAMGKLTGGIAHDFNNLLAVIGGSFELLRKRLPPSDPRTESLIENGL 428

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q  R  +      L F R       +V     +  + ++++  +  +  + + +  +   
Sbjct: 429 QATRRGAGLVQRLLSFARKQELRPSAVALPDLVIGMRELLKRSVETNISIDLRFPLDLPQ 488

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDS----------KNENIFSLKINGNL 157
              +  ++ + L      A  ++P GG + I  Q                I  ++ +G  
Sbjct: 489 AYVDANQLEMVLINLVVNARDAMPDGGSICIEGQSRTAAEAGRIDAPGYVILIVRDDGIG 548

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE   +  D    +        +       LA ++  RL           +   L 
Sbjct: 549 M-EPEVLARATDPFFTTKGPGNGTGLGLSMAHGLAEQSGGRLQIHSRPGKGTTVEIWLP 606


>gi|295697074|ref|YP_003590312.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
 gi|295412676|gb|ADG07168.1| multi-sensor signal transduction histidine kinase [Bacillus tusciae
           DSM 2912]
          Length = 622

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 56/217 (25%), Gaps = 23/217 (10%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMSAIIRLKFMRL------- 69
            + H++ +P+ AI    E + E  +        ++LI   +      ++ +         
Sbjct: 399 NVSHELKTPVTAICGLAETVVEEDLAPEERRHFLELIHREARRLEQLVRDLLDLSRLESH 458

Query: 70  ----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                       +    +        +    D  +                ++L NL   
Sbjct: 459 LTTLHRRPVDLAEMARDVVQDYGYAAEQAGTDLYLDKEGDCRAEVDPDRVRQVLSNLIDN 518

Query: 126 AHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEKFTQIVDGNV------ESTIDS 178
           A    P GG+V + V  +        +   G     PE   ++ +           T   
Sbjct: 519 ALKYTPAGGRVDVRVLGTDPREVKVEVADTGVGI-PPEDRDRVFERFYRVDKARARTTGG 577

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +   +  R+  E              +
Sbjct: 578 TGLGLAIVKHVVQLHGGRVGVESEVGKGSRFFVQFPR 614


>gi|258621553|ref|ZP_05716586.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
 gi|258586171|gb|EEW10887.1| Signal transduction histidine-protein kinase barA [Vibrio mimicus
           VM573]
          Length = 1325

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEQELREAKDAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTQLDATQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKIEAGKLNVERIDFSLDDVLDNVTAVISLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G  V       + + +   +F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTQQGEIVISARVRQLNEQQVMLLFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQEKLNDLFNAFSQADNSITRQYGGTGLGLSISKQLVELMGGQISVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|242279338|ref|YP_002991467.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
 gi|242122232|gb|ACS79928.1| histidine kinase [Desulfovibrio salexigens DSM 2638]
          Length = 304

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 73/238 (30%), Gaps = 26/238 (10%)

Query: 2   AKNICF-----NLSSMDLVALLCSRICHDIISPIGAIHNSLE------------LLDEVG 44
            K++        L  M+    + + I H+I +P+  I    E            LL +  
Sbjct: 61  RKSLELEGQLVQLKRMNSFDEMSAGIAHEINNPLNIIMQEAEIIRVNIEFSESCLLTDEI 120

Query: 45  IEDE--VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            E    +   +R  S      L   R     T  VD    L  +  ++++ +   K   V
Sbjct: 121 DESIGVIRAQVRRCSEVTRKLLDMGRKRLPVTQQVDINKLLKGMLALVDEEVGGKKIKVV 180

Query: 103 SWTGE----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                             ++ LNL   A  ++   G++ IS +    + +  +  NG   
Sbjct: 181 RDIPSGALSVNTDPPLLRQVFLNLLKNAIQAVGHRGEIVISSRREGGKVVVRVADNGVGI 240

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +K   I      +    +   I     + + ++    +  E       V S  + 
Sbjct: 241 -AEDKLPHIFTPFFTTKSPEEGTGIGLAVSLRIINQLGGTIDVESSVGKGTVFSVAIP 297


>gi|121593072|ref|YP_984968.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
 gi|120605152|gb|ABM40892.1| multi-sensor hybrid histidine kinase [Acidovorax sp. JS42]
          Length = 1137

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 63/245 (25%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           +         + DL       +   + + H++ +P+ +     +LL +   ++   + +R
Sbjct: 440 LTAQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQQNLTAEQVR 499

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL-------------------IGLGDIEQVIEDFIA 95
            +          + L                              +      Q  +  + 
Sbjct: 500 YAQTIHNAGTDLLNLINDILDLAKIEAGQTSVEIGPVTVAKVVAGVMEPLRAQAQDKGLQ 559

Query: 96  VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            +  V+          ++  A+IL NL   A     RG           +   F+++  G
Sbjct: 560 FNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFTARGEVTMRVFAGDNDTLCFAVRDTG 619

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                P+   +I D                 +       LA      +  +       V 
Sbjct: 620 IGI-APDLQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAVQSAPGEGSVF 678

Query: 210 SALLE 214
           +  L 
Sbjct: 679 TLTLP 683


>gi|110679530|ref|YP_682537.1| C4-dicarboxylate transport sensor protein dctB [Roseobacter
           denitrificans OCh 114]
 gi|109455646|gb|ABG31851.1| C4-dicarboxylate transport sensor protein dctB [Roseobacter
           denitrificans OCh 114]
          Length = 567

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVM-------QLIRLSS 57
            S  L AL  + + + H++  P+ A+   L    LL      +E +        LI    
Sbjct: 335 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRHEEALSSFGRIDDLIERMG 394

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSR 113
                   + R        V     L     ++E  +   +    R+      E +    
Sbjct: 395 GITRQLKSYARKGQEAFAPVPMGDALASSLAMMEPQLRQRQVQITRILPDDPVEVMGDRL 454

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +        + +   +      +++ NG      E    + +   
Sbjct: 455 RIEQVMVNLLRNAIDATKSAAAPKVEIILSAGETATLTVRDNGPGI---EDLDALFEPFY 511

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    D   +       +  +   RL          V    L 
Sbjct: 512 TTKQPGDGVGLGLAISSQIVTDLGGRLTARNGQQGGAVFEMQLP 555


>gi|90425281|ref|YP_533651.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
 gi|90107295|gb|ABD89332.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB18]
          Length = 864

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 57/223 (25%), Gaps = 25/223 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H+I +P+ A+      L +  ++ E  + +     +    L  +     ++ 
Sbjct: 339 STFVAMMSHEIRTPMNAVLGLATNLLDSRLDAEQRRSVVGIHDAGDALLDILNDILDFSK 398

Query: 76  SVDSLIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKIL 119
                + L  I    E  +                 V  ++  S        +    ++L
Sbjct: 399 LEAGRLSLESIAFSPEALVESALSIVLPRATARGLRVRNQIDPSLPIALQGDAGRIRQVL 458

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDGNV--- 172
           LNL   A    P G  V  +     +E      + +   G      +  +   D      
Sbjct: 459 LNLMSNAVKFTPSGEVVVTTKCRWADESFAALEWIIADTGIGIAEQDIGSLFTDFAQADS 518

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +       L  +    +               L
Sbjct: 519 SISRRFGGSGLGLAICKRLVEQMGGEIQVSSAYGKGTTFRFSL 561


>gi|333008592|gb|EGK28060.1| phosphate regulon sensor kinase PhoR [Shigella flexneri VA-6]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 SPTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|330882623|gb|EGH16772.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 694

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 68/230 (29%), Gaps = 25/230 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---------- 57
            S+ + A+  L   I HD  + +  +  SL+L+        +  + R             
Sbjct: 320 QSLKMEAVGQLTGGIAHDFNNMLTGVIGSLDLIKLRMARGRLEGVERFMDAALISAQRAA 379

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                 L F R       +V     +  +  +++  +     ++   + E   +  +  +
Sbjct: 380 SLTDRLLAFSRRQSLDEKAVSVNNLITALADLLKKTVTEKIIIKFDLSPEDPWVFADANQ 439

Query: 118 ILLNLFM---VAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +   +      A  ++P              +  +        ++  G+     +   ++
Sbjct: 440 LENAVLNLVINARDAMPHGGGLTIATCVEQEAQDEPLRHVCVQVRDTGHGI-PKDMLDKV 498

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +        +    V   A+++  RL  E        +S  L K
Sbjct: 499 TEPFFTTKPIGQGTGLGLSMVYGFANQSNGRLSIESTTGVGTTVSICLPK 548


>gi|325292361|ref|YP_004278225.1| two component sensor kinase [Agrobacterium sp. H13-3]
 gi|325060214|gb|ADY63905.1| two component sensor kinase [Agrobacterium sp. H13-3]
          Length = 775

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 26/235 (11%)

Query: 5   ICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV---------------GIEDE 48
                 + +L  +   + + H++ +P+ AI    ++L                   I D 
Sbjct: 532 EKERAQAANLAKSEFLANMSHELRTPLNAILGFSDILQNEMFGPVGSPKYSEYARDIHDS 591

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
              L+ + +    +             ++D    + +  ++                   
Sbjct: 592 GKHLLNVINDILDMSKIEAGHMRINRETIDLAPLIEETLRLTAIQAEQKNITVQQKVCAG 651

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           + +  +     +I+LNL   A      GG+V +     +   I ++   G      E   
Sbjct: 652 LTMQGDRRAMKQIMLNLLSNAVKFTGNGGRVALRTHVHQAAMILTIADTGIGI-PAEALD 710

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I             +     +       L   +   +     +    V++ ++ 
Sbjct: 711 KIGQPFEQVQSQYAKSQGGSGLGLAISRSLVRLHGGTMKIRSCEGRGTVVTIIIP 765


>gi|315150776|gb|EFT94792.1| PAS domain S-box [Enterococcus faecalis TX0012]
          Length = 591

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/226 (9%), Positives = 60/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + D+ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNLSHELKTPVTSLLGFTETLIDGAKEDPEVLDQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQGITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              ++ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPVVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +    V         ++  +         +  L 
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITLP 585


>gi|317129695|ref|YP_004095977.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315474643|gb|ADU31246.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 413

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 70/223 (31%), Gaps = 13/223 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----------IEDEV 49
           + K++  +   + LV+ L + I H++ +P+      ++L+               +    
Sbjct: 190 LKKDLQKS-EQLRLVSELAASIAHEVRNPMTVARGFIQLIHSNSKLTSEEKRYLKLTMSE 248

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +   +L     +   K    A         +  +    +       V  ++ V      I
Sbjct: 249 LDRAQLIITDYLSLAKPADKATKQIQIYSIIYKVLHTIEAYALMNNVKVKMDVQEDITII 308

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              ++  +++LNL      ++  GG++ I+    + + I S+K  G      E+  QI  
Sbjct: 309 GNEQKLTQVILNLTKNGIEAMENGGELIINGYREREKIILSIKDTGIGM-SKEQLQQIGK 367

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +  +   +       +       +  +            
Sbjct: 368 AYYSTKTNGTGLGLMVSYSIIESLGGAVSVKSEIGQGTEFILT 410


>gi|288941471|ref|YP_003443711.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288896843|gb|ADC62679.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 904

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 67/240 (27%), Gaps = 31/240 (12%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           +     L  +D L +   S   H++ +P+ AI   ++L+ E         +  ++  +  
Sbjct: 492 ETANQELQQLDQLKSKFISMASHELRTPLIAIQGYVDLIREGRGGEISAAQRTMLDTVSR 551

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------- 107
           ++      +  +        +   L  +      I   I  +++  +             
Sbjct: 552 NATRLARIVSELLDISRIEENKLVLERVPVSLGQIVSEITEEQQPYLESRRHALTLEIAD 611

Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                       +++++NL   A    P GG++ I V    +     +   G   +  + 
Sbjct: 612 ALPRVDGDPDRISQVVINLLGNAIKYTPDGGRIHIRVYPEPDRVHLEVTDTGIGIKPEDI 671

Query: 164 ---FTQIVDGNVESTI---------DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              F +       +               +    V  +   +  ++  +           
Sbjct: 672 GKLFKRFSTLGDVTKHRTGKNEFLAGGTGLGLSIVQGIVQAHAGKIWVDSEYGRGSTFHV 731


>gi|256421296|ref|YP_003121949.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256036204|gb|ACU59748.1| GAF sensor hybrid histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1162

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 72/240 (30%), Gaps = 30/240 (12%)

Query: 4   NICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIR 54
               +L + +L       +   + + H++ +P+ ++     LL+E    +   + +    
Sbjct: 482 RQQLSLKAEELEQSSRYKSEFLANMSHELRTPLNSVLILARLLEENKDRNLSSKQVDYAG 541

Query: 55  LSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-- 108
           +   S           + L+    G V+  I    +  ++ D   + + V    +     
Sbjct: 542 IIHKSGSDLLKLINDILDLSKIEAGKVEMQIEPVSVSAMVSDLEQLFRVVADEKSIHFST 601

Query: 109 ----------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
                         +   +++ NL   A    P+ G + + +  + +    ++  NG   
Sbjct: 602 EIAAGVPATVQTDRQRLEQVIKNLLSNAFKFTPKNGNIQLRLTAAADGVYIAVSDNGTGI 661

Query: 159 RFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                    +  +  DG+         +       L       +  E  +      + +L
Sbjct: 662 PVEKQQLIFEAFRQADGSTSRKYGGTGLGLSISKELMKRLGGEIRLESKEGQGSTFTVVL 721


>gi|225017480|ref|ZP_03706672.1| hypothetical protein CLOSTMETH_01407 [Clostridium methylpentosum
           DSM 5476]
 gi|224949719|gb|EEG30928.1| hypothetical protein CLOSTMETH_01407 [Clostridium methylpentosum
           DSM 5476]
          Length = 469

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA ++  N++++   A       +   H++ +P+ +I    ++L    +  E +      
Sbjct: 231 MADSVEQNITALKETARRQEEFAANFAHELKTPLTSIIGYSDMLRSRELPPESIFSFANY 290

Query: 57  SMSAII--------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---VQVSWT 105
             S            +  + L                 E       A  +    ++V   
Sbjct: 291 IHSEGRRLESLSLKLMDLIVLGHQQFELRPVHCETLLKETAAVFLPAAGQSRASIEVEAE 350

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +    +  K +L   +         G++ +  Q    E + ++  NG      E   
Sbjct: 351 PGIVQAEPDLIKTMLYNLLDNARKACEQGRIRLEGQWDGEEYLLTVSDNGKGIPPEEI-E 409

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +I +             +   +       +A  +   L  +     +  +S  L+K
Sbjct: 410 KITEPFYMVDKSRARRQNGAGLGLSLCSEIARLHGSELEIQSEPGQDTRISIRLQK 465


>gi|212704931|ref|ZP_03313059.1| hypothetical protein DESPIG_02998 [Desulfovibrio piger ATCC 29098]
 gi|212671595|gb|EEB32078.1| hypothetical protein DESPIG_02998 [Desulfovibrio piger ATCC 29098]
          Length = 530

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 77/231 (33%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLS---SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEV 49
           MAKN         +  LV++  + + I H+I +P+G I +S ELL       + G    +
Sbjct: 249 MAKNRQLENELHSNEKLVSMGRVIASIAHEIRNPLGIIRSSAELLQRRMGKADAGTSRIL 308

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--- 106
             +   S   +     F+  A       D +     + QV+        RV V+      
Sbjct: 309 QAIYDESVRLSQTVNDFLDYARPRQPRQDLVDLDLVLSQVLAFLEGELGRVGVAVERATS 368

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE 162
                        + + N+ +    ++   G + IS + S +   +     +G     P 
Sbjct: 369 PGLWVRGDKDLLYRAIYNILVNGQQAMDGPGIIRISSRMSDDGRVVLEALDSGPG-FDPA 427

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               ++D    +      +    V  + + +   +      +   ++  LL
Sbjct: 428 LLDSVLDPFFTTKDGGTGLGLPIVSSIINSHGGEIQLANGPEGGALVRILL 478


>gi|56477646|ref|YP_159235.1| sensor kinase PilS [Aromatoleum aromaticum EbN1]
 gi|56313689|emb|CAI08334.1| sensor kinase PilS [Aromatoleum aromaticum EbN1]
          Length = 522

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 68/224 (30%), Gaps = 17/224 (7%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + I   +  M L AL  L + + H+I +P+ A+  + ELL E    D  ++L+R+ + +A
Sbjct: 297 EEILQRMQQMKLAALGRLTASMAHEIRNPLSAVMQAAELLTEEKRADVQVRLVRIINDNA 356

Query: 61  IIRLKFMRLA----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
               + +R                     +  L +   +         RV++        
Sbjct: 357 RRIERMVRDVLALGRREEALPEALILAPFVASLIEESTLGGAAGRDVFRVEIPARATLGI 416

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVD 169
                 +IL NL   A                D+       +  +G      E+  ++ +
Sbjct: 417 DRAHLHQILDNLVANARRYCSGKPGSVRVFAVDAGGRTALHVLDDGPGIDAAERL-RVFE 475

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLL-PEIIDDHNVVLSAL 212
               +      +  Y    LA  N   L   +            
Sbjct: 476 PFFTTHPKGTGLGLYIARELAEANGATLELADNAP--GAHFVLT 517


>gi|15614508|ref|NP_242811.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
 gi|10174563|dbj|BAB05664.1| two-component sensor histidine kinase [Bacillus halodurans C-125]
          Length = 462

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 14/212 (6%), Positives = 61/212 (28%), Gaps = 17/212 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEV-MQLIRLSSMSAIIRLKFM----------- 67
           + + H++ +P+  +    E ++E  I+    + +I+  +      +  +           
Sbjct: 249 ADVSHELRTPLSYMKGYAEGVEEGVIDPSKGLSIIQKEANRLERLVNDLLDLAQLEGESY 308

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
            +          +  + +  + +     +   + +              +++ NL   A 
Sbjct: 309 VMKDEPIAFAQLVYEVVEQFRYLAAQKRLQVHLDLDEDVIISGDPDRIEQVIRNLLDNAI 368

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV--DGNVESTIDSHDIQ 182
                   +++++    +   F L   G      +    F +    + +         + 
Sbjct: 369 KYAHEETTISLTIGREGSRAQFILSDQGIGIPEDKLALVFERFYRVNKSRSRKKGGTGLG 428

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +  ++   +     +     ++  L+
Sbjct: 429 LAIASQIIKKHGGTIDITSQELKGTTVTITLK 460


>gi|26246404|ref|NP_752443.1| phosphate regulon sensor protein [Escherichia coli CFT073]
 gi|191166728|ref|ZP_03028555.1| phosphate regulon sensor protein PhoR [Escherichia coli B7A]
 gi|193068725|ref|ZP_03049686.1| phosphate regulon sensor protein PhoR [Escherichia coli E110019]
 gi|194432575|ref|ZP_03064861.1| phosphate regulon sensor protein PhoR [Shigella dysenteriae 1012]
 gi|218557309|ref|YP_002390222.1| phosphate regulon sensor protein [Escherichia coli S88]
 gi|218688262|ref|YP_002396474.1| phosphate regulon sensor protein [Escherichia coli ED1a]
 gi|218693860|ref|YP_002401527.1| phosphate regulon sensor protein [Escherichia coli 55989]
 gi|218698696|ref|YP_002406325.1| phosphate regulon sensor protein [Escherichia coli IAI39]
 gi|227884594|ref|ZP_04002399.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli 83972]
 gi|237707607|ref|ZP_04538088.1| phosphate regulon sensor protein phoR [Escherichia sp. 3_2_53FAA]
 gi|256020367|ref|ZP_05434232.1| phosphate regulon sensor protein [Shigella sp. D9]
 gi|293408544|ref|ZP_06652383.1| phoR [Escherichia coli B354]
 gi|293418466|ref|ZP_06660901.1| two-component system [Escherichia coli B088]
 gi|300988100|ref|ZP_07178537.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 45-1]
 gi|301025439|ref|ZP_07188989.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 69-1]
 gi|301049598|ref|ZP_07196550.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 185-1]
 gi|307312225|ref|ZP_07591861.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli W]
 gi|309794877|ref|ZP_07689298.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 145-7]
 gi|331645571|ref|ZP_08346675.1| phosphate regulon sensor kinase PhoR [Escherichia coli M605]
 gi|331651328|ref|ZP_08352353.1| phosphate regulon sensor kinase PhoR [Escherichia coli M718]
 gi|332281545|ref|ZP_08393958.1| phosphate regulon sensor protein phoR [Shigella sp. D9]
 gi|26106802|gb|AAN78987.1|AE016756_170 Phosphate regulon sensor protein phoR [Escherichia coli CFT073]
 gi|190903239|gb|EDV62961.1| phosphate regulon sensor protein PhoR [Escherichia coli B7A]
 gi|192958088|gb|EDV88530.1| phosphate regulon sensor protein PhoR [Escherichia coli E110019]
 gi|194419136|gb|EDX35219.1| phosphate regulon sensor protein PhoR [Shigella dysenteriae 1012]
 gi|218350592|emb|CAU96282.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli 55989]
 gi|218364078|emb|CAR01743.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli S88]
 gi|218368682|emb|CAR16422.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli IAI39]
 gi|218425826|emb|CAR06632.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli ED1a]
 gi|222032195|emb|CAP74934.1| Phosphate regulon sensor protein phoR [Escherichia coli LF82]
 gi|226898817|gb|EEH85076.1| phosphate regulon sensor protein phoR [Escherichia sp. 3_2_53FAA]
 gi|227838680|gb|EEJ49146.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli 83972]
 gi|291324994|gb|EFE64409.1| two-component system [Escherichia coli B088]
 gi|291471722|gb|EFF14205.1| phoR [Escherichia coli B354]
 gi|294493061|gb|ADE91817.1| phosphate regulon sensor protein PhoR [Escherichia coli IHE3034]
 gi|300298643|gb|EFJ55028.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 185-1]
 gi|300396024|gb|EFJ79562.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 69-1]
 gi|300407514|gb|EFJ91052.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 45-1]
 gi|306907727|gb|EFN38229.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli W]
 gi|307552304|gb|ADN45079.1| phosphate regulon sensor protein PhoR [Escherichia coli ABU 83972]
 gi|307628131|gb|ADN72435.1| phosphate regulon sensor protein [Escherichia coli UM146]
 gi|308121530|gb|EFO58792.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 145-7]
 gi|312944977|gb|ADR25804.1| phosphate regulon sensor protein [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315059677|gb|ADT74004.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli W]
 gi|315289886|gb|EFU49276.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 110-3]
 gi|315294170|gb|EFU53521.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 153-1]
 gi|315299631|gb|EFU58879.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 16-3]
 gi|320197164|gb|EFW71781.1| phosphate regulon sensor protein [Escherichia coli WV_060327]
 gi|323170480|gb|EFZ56130.1| phosphate regulon sensor kinase PhoR [Escherichia coli LT-68]
 gi|323379757|gb|ADX52025.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli KO11]
 gi|323958592|gb|EGB54295.1| phosphate regulon sensor kinase PhoR [Escherichia coli H263]
 gi|324010108|gb|EGB79327.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 57-2]
 gi|324116883|gb|EGC10796.1| phosphate regulon sensor kinase PhoR [Escherichia coli E1167]
 gi|330910193|gb|EGH38703.1| phosphate regulon sensor protein PhoR (SphS) [Escherichia coli
           AA86]
 gi|331045733|gb|EGI17859.1| phosphate regulon sensor kinase PhoR [Escherichia coli M605]
 gi|331051069|gb|EGI23121.1| phosphate regulon sensor kinase PhoR [Escherichia coli M718]
 gi|332085719|gb|EGI90883.1| phosphate regulon sensor kinase PhoR [Shigella dysenteriae 155-74]
 gi|332103897|gb|EGJ07243.1| phosphate regulon sensor protein phoR [Shigella sp. D9]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|330921689|ref|XP_003299527.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
 gi|311326752|gb|EFQ92366.1| hypothetical protein PTT_10535 [Pyrenophora teres f. teres 0-1]
          Length = 1358

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 57/242 (23%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  N      +  + +   + + H+I +PI  +    ELL ++ + DE          SA
Sbjct: 722 LLANEAAAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDMNLNDEQKDCAENIHRSA 781

Query: 61  I------------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                              D    +    Q          + +V
Sbjct: 782 NSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMSFAAQRKGLDYQSSIQDEV 841

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLA 158
                 +       +IL N+   +      G      +   +++      FS+   G   
Sbjct: 842 QADLRVMGDPGRLRQILTNVLTNSIKFTSVGTVKLSVMISQESKDMVTVNFSVVDTGIGI 901

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E   ++                   +       L    K ++  +         +  
Sbjct: 902 -EEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFW 960

Query: 213 LE 214
           + 
Sbjct: 961 IP 962


>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
 gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris
           trichoides DG6]
          Length = 1010

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           + +       +        + + H++ +P+ AI    E L E         + + +  I 
Sbjct: 625 LRQANVALAHAARTKDEFLASMSHELRTPLNAILGLSEALIEGVRGPLNERQLDALHNIE 684

Query: 55  LSSMSAIIR-LKFMRLAFGYTGSVDSLIGLGDIEQVIE--------DFIAVDKRVQVSWT 105
            S    +      + L+    G +D  I    + +V +          +    R+     
Sbjct: 685 ASGQHLLALINDILDLSKVEAGRLDLQIEAVSVAEVCQASLLFVKEQALKKSLRLSFHLD 744

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARF 160
            +  ++  +  ++   L      A    P  G V + V       + +F ++  G     
Sbjct: 745 DQMAEMDADPRRLKQMLVNLLSNAVKFTPPKGHVNLHVTIDLEAEQIVFVVEDTGIGIAQ 804

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++               +   +    V  LA  +   ++ E         S  L 
Sbjct: 805 DDLP-RLFQPFKQLDSRLSRQHEGTGLGLALVRRLAEMHGGGVMVESELGKGSRFSIQLP 863


>gi|302388871|ref|YP_003824692.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
 gi|302199499|gb|ADL07069.1| integral membrane sensor signal transduction histidine kinase
           [Thermosediminibacter oceani DSM 16646]
          Length = 483

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 70/254 (27%), Gaps = 43/254 (16%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------------- 43
           MA+ I   +   +L     + + H++ +P+ AI      L                    
Sbjct: 232 MAQEI---MRQEELKNEFIASVSHELRTPLTAIKGWTITLLSAIRGTSQAGRSDIRENAG 288

Query: 44  ----------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY-----TGSVDSLIGLGDIEQ 88
                         E +++I   S      ++ +     +       ++D +  +  +  
Sbjct: 289 VPDRRVYLNLDELIEGLEIITKESERLSELVEELLDFSRFEAGAIKLNLDKVALVDTLNY 348

Query: 89  VIEDFIAVDKRVQVSWTGEKID-------LSRERAKILLNLFMVAHASLPRGGKVTISVQ 141
           +    +   KR  V +     +             ++L+NL   A    P GG+V +  +
Sbjct: 349 IKTQMMPRAKRQAVEFEIYPEEGLPEILADENRIKQVLINLLDNAFKFTPAGGRVRVKAE 408

Query: 142 DSKNENIFSLKINGNLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPE 200
            + +     ++  G      +            S      +       +   +  R+   
Sbjct: 409 SANDSVRIIVEDTGCGIPPEDLPHVTKKFYKAKSKQPGSGLGLAICDEIVRLHGGRMEIT 468

Query: 201 IIDDHNVVLSALLE 214
                   +  +L 
Sbjct: 469 SAPGKGTRVEVILP 482


>gi|296448571|ref|ZP_06890444.1| histidine kinase [Methylosinus trichosporium OB3b]
 gi|296253911|gb|EFH01065.1| histidine kinase [Methylosinus trichosporium OB3b]
          Length = 589

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 22/224 (9%)

Query: 14  LV-ALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           L  +   + + H+I +P+  +    +LL     +      V  +       A +    + 
Sbjct: 74  LAKSRFLATVSHEIRTPLNGVLGLAQLLAATRLDAEQASYVDAIGASGRSLAQLIDDILD 133

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKIDLSRERA 116
            +    G V+  I    +  ++E  +             +   +  +        +    
Sbjct: 134 FSKIEAGKVELRIESFALAPLVEGVVELLAPRAEAKNLEIAGFIAANAPERIEGDAARVR 193

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGN 171
           ++L+NL   A      GG       D++   +F +   G       +          DG+
Sbjct: 194 QVLVNLAGNAVNFTSEGGVGLRVEIDAEGALVFRVVDTGPGVPPGAREIIFEEFEQGDGS 253

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +       LA     RL  E       V    L +
Sbjct: 254 STRRHGGTGLGLAISRHLAKLMGGRLEIEDRPGPGSVFMFTLPR 297


>gi|264679332|ref|YP_003279239.1| multi-sensor signal transduction histidine [Comamonas testosteroni
           CNB-2]
 gi|262209845|gb|ACY33943.1| multi-sensor signal transduction histidine [Comamonas testosteroni
           CNB-2]
          Length = 458

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 67/245 (27%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +A+++     +  +     + + H+I +P+  +   +E L     E       ++L+   
Sbjct: 197 LARDVTALEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQNLPLEEDERRRYLELMAQQ 256

Query: 57  SMSAIIRLKFMRLAFG-YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113
           +      ++ +          + S      + Q++       + +  + T ++       
Sbjct: 257 AERMQHLVEDLLTLSRLEGSPLPSNNDWVSVAQLLNRCENEARGLSNALTRKQAKPHVLN 316

Query: 114 ------------------ERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKIN 154
                             E      NL   A    P GG++ +  Q        F++K +
Sbjct: 317 FPDEQALRQAGDLAGASAELHSAFSNLLANAMRYTPAGGQIDVRWQLLPDGSARFAVKDS 376

Query: 155 GNLARFPEK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G             +      +         +    V  +   +  RL  E         
Sbjct: 377 GPGIDEKHVSRLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHGARLSIESELGKGSEF 436

Query: 210 SALLE 214
           +    
Sbjct: 437 AVTFP 441


>gi|229527623|ref|ZP_04417014.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           12129(1)]
 gi|229333985|gb|EEN99470.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           12129(1)]
 gi|327485561|gb|AEA79967.1| Osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           LMA3894-4]
          Length = 497

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQ 51
           A     N+ +          L + + HD+ +P+GAI  S   L +         + E++ 
Sbjct: 253 AHRTLANVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQHELLT 312

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            I          L  +     YT S           + +   +      +++    +I+ 
Sbjct: 313 SIAEQGERLNRSLTKLLDITRYTASALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIES 372

Query: 112 SRE--------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L+NL   A    PRG ++ I+      +   ++  NG      E 
Sbjct: 373 QPMLVELDSLLIEQVLINLVENAAKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PDEA 431

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D       +  D   +      ++   ++  +     +      +  + 
Sbjct: 432 LPRIFDRFYRVEGNHADGTGLGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|225569632|ref|ZP_03778657.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
 gi|225161102|gb|EEG73721.1| hypothetical protein CLOHYLEM_05726 [Clostridium hylemonae DSM
           15053]
          Length = 870

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 61/241 (25%), Gaps = 31/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSS 57
            K      +     +   S++ H+I +P+  I   +EL    ++E       +  I LSS
Sbjct: 341 EKERAETANRAK--SDFLSQMSHEIRTPLNGIMGMVELGKHHIEEPDRMRNCLDKITLSS 398

Query: 58  MSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSW 104
              +  +  +             +    D    L  +  V         I     +    
Sbjct: 399 AHLLSLINDILDMSKIESGKIELHPERFDLGRLLRTLTTVFLVQAKNKQIDFQIFLYGEL 458

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLAR 159
                  +    +IL NL   A    P  G        +   ++     F ++  G    
Sbjct: 459 EEYLTGDALRLNQILTNLLSNALKFTPAHGYVSLNVEELQRDENGIWLRFEVRDTGRGI- 517

Query: 160 FPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE   ++ +   +             +               +          V +  L
Sbjct: 518 APENLERVFEAFTQENSGIVREYGGTGLGLPITKNFVQMMGGSVTVSSEIGAGSVFTVDL 577

Query: 214 E 214
            
Sbjct: 578 P 578


>gi|120556772|ref|YP_961123.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120326621|gb|ABM20936.1| integral membrane sensor hybrid histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 1127

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 57/215 (26%), Gaps = 24/215 (11%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-----RLKFMRLAFGYTG 75
            I H++ SP+ AI    +L++         +        +           + ++    G
Sbjct: 680 GISHELRSPLNAILGYAQLMENDDSVPPHRKEALGVIRRSGEYLADLIEGLLDISKIEAG 739

Query: 76  SVDSLIG------LGDIEQVIEDFIAVDKRVQVSWTGEKI------DLSRERAKILLNLF 123
            +D          L +    +    A +K +   +              +   +IL+NL 
Sbjct: 740 RLDLHRDQVRIGLLMEQLVTMFRLQAEEKGLAFDYHCPHPLPELVTTDEKRLRQILINLL 799

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDS 178
             A     +G         S+    F+++  G      E   +I            +   
Sbjct: 800 SNAIKYTDQGSVSLTLRYRSQV-AEFTVRDTGEGI-AAENIERIFRPFERIRNPGQSRTG 857

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +      LL       +  E       V    L
Sbjct: 858 TGLGLTITRLLTEIMGGDISVESEPGEGSVFKVSL 892


>gi|152964304|ref|YP_001360088.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
 gi|151358821|gb|ABS01824.1| PAS/PAC sensor signal transduction histidine kinase [Kineococcus
           radiotolerans SRS30216]
          Length = 492

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 57/225 (25%), Gaps = 22/225 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL----------------LDEVGIEDEVMQLIRL 55
            +L     + + H++ +P+ AI  SL L                L       + +  +  
Sbjct: 255 EELKRQFTAVVSHELRTPLTAIKASLRLVTSGVLGPLPEEPARLLRIADENADRLAALVN 314

Query: 56  SSMSAIIRLKFMRL-AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +                    D      +  +       V+  +              
Sbjct: 315 DILDVERLDAGTMPLEPEDVDLADLARAGVEQLESTAVAAGVELVLGEVGPARVHADPHR 374

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR-----FPEKFTQIVD 169
            A+ L NL   A      GG+V ++ + +  E   +++  G               + V 
Sbjct: 375 IAQALTNLVGNAVKFSEAGGRVEVTCRRTAREARLAVRDEGRGIPHDQLEAVFDRFRQVY 434

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +         +       +   +  R+      +     + +L 
Sbjct: 435 ASDAQRQSGSGLGLAITKGIVERSGGRVELRSRPNEGSEFTVVLP 479


>gi|319940069|ref|ZP_08014423.1| sensor protein [Streptococcus anginosus 1_2_62CV]
 gi|319810783|gb|EFW07110.1| sensor protein [Streptococcus anginosus 1_2_62CV]
          Length = 343

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 73/236 (30%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +         S     L+ +++ HDI +P+ +I  ++E + +       +   ++ I   
Sbjct: 106 LQNTFASLEESEKEKGLMIAQLSHDIKTPLTSIQATVEGMLDGVIAADEQQYYLKTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------ 110
           +      ++ +      T +   +    +   + +  I +    Q+    E  D      
Sbjct: 166 TDRLNKLVEELSFITLNTMNQPDVPLEKEEIFLDKLLIDIMSEFQLVIDKEDRDIQISVQ 225

Query: 111 --------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                      + ++I+LNL   A      G K+TI           ++   G   +  +
Sbjct: 226 PESAKIISNYDKLSRIILNLVSNAFKYSEAGTKLTIDAAVDNKRLTLTVADEGQGIKSED 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +  Y    LA +    +  +         S +L
Sbjct: 286 LEKIFKRLYRVESSRNMKTGGHGLGLYIARELARQLGGDIFVQSEYGQGSSFSLVL 341


>gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1347

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 18/228 (7%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEV--MQLIRLSSMS 59
            K     ++ M L   +   I H++ +P+  I   L E+L++V    +   ++L++ ++  
Sbjct: 816  KERQKEVNEMKLRFFI--NISHELRTPLTLILAPLHEMLNKVNDRWQHKQLELMKQNATR 873

Query: 60   AIIRLKFMRLAF------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +  +                               E + +               E
Sbjct: 874  LLHLVNQLLDYRKAELGVFGLKVKPSQVHRIIEKNFRFYEALAQRKGIQYDFCSEVEDKE 933

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             +        I+ NL   A      G  +T+S++D+ N  +  +K  GN     E+    
Sbjct: 934  ILCDPNYLELIVNNLLSNAFKHTEEGQSITVSLKDTGNNLLLQVKDTGNGIPLEEQKKIF 993

Query: 168  VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +S+     I    V  L   +   +  +  +      S  L 
Sbjct: 994  ERFYQVKSSHTGSGIGLSLVQRLVELHHGHIELDSAEGVGSTFSIFLP 1041


>gi|330906611|ref|XP_003295535.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1]
 gi|311333095|gb|EFQ96363.1| hypothetical protein PTT_01526 [Pyrenophora teres f. teres 0-1]
          Length = 1329

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 726 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 785

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 786 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 845

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 846 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQECGPDHYVFQFAVSDTG 905

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 906 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 965

Query: 211 AL 212
             
Sbjct: 966 FT 967


>gi|260777693|ref|ZP_05886586.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260605706|gb|EEX31991.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 856

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 65/240 (27%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           ++      + +     A   +++ H++ +P+  I    +LL       + ++ + +   S
Sbjct: 464 QSQAARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKGKISNTDDIEHLDVLCNS 523

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------- 106
               L  +     ++        +   +  + + I+  +++                   
Sbjct: 524 GEHLLAVLNDILDFSKIEQGKFHIQSADFRLVELISAVEKIYTPLCDEKGIGFVVETNVS 583

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARF 160
                        +IL NL   A      G          +  ++    S++  G     
Sbjct: 584 NNTFAHSDQVRLNQILFNLVSNAIKFTHEGEVTVSLFCDGESPESRLNISVRDTGIGI-E 642

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E+ + I +                 +    V  L      ++  E    +    S  + 
Sbjct: 643 RERISHIFEPFVQAEATTTREYGGSGLGLAIVHSLVEMLNGQIEIESSIGYGTKFSLSVP 702


>gi|298530374|ref|ZP_07017776.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509748|gb|EFI33652.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 862

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 67/245 (27%), Gaps = 33/245 (13%)

Query: 1   MAKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           + K++   L +    A   S        R+ H+I +P+ AI     LL    +       
Sbjct: 180 LRKSLEQKLVAAKEEAEQASACRGEFLARMSHEIRTPMNAITGMAYLLGSTELNHVQQDY 239

Query: 53  IRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------ 96
           +R    SA          +  +    G ++       ++Q+I   + V            
Sbjct: 240 VRKIIDSADTLLAIINDILDFSKIDAGRMELEELPFSLQQIIGRMLNVVGARAEEKGLKI 299

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLK 152
              +        +  +    +I+LNL   A     +G           +  + + +F + 
Sbjct: 300 QTHIHPGVPDSLVGDALRLGQIILNLCSNAVKFTSQGEVALTVTLQKERQHQVDLLFCVS 359

Query: 153 INGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G      +           DG++        +       L       +  E I D   
Sbjct: 360 DTGTGITPEKAEQLFQAFQQADGSITRKYGGSGLGLAICKELTQMMGGEIWVESIPDQGS 419

Query: 208 VLSAL 212
                
Sbjct: 420 SFFFT 424


>gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
 gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
          Length = 1347

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 18/228 (7%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-ELLDEVGIEDEV--MQLIRLSSMS 59
            K     ++ M L   +   I H++ +P+  I   L E+L++V    +   ++L++ ++  
Sbjct: 816  KERQKEVNEMKLRFFI--NISHELRTPLTLILAPLHEMLNKVNDRWQHKQLELMKQNATR 873

Query: 60   AIIRLKFMRLAF------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +  +  +                               E + +               E
Sbjct: 874  LLHLVNQLLDYRKAELGVFGLKVKPSQVHRIIEKNFRFYEALAQRKGIQYDFCSEVEDKE 933

Query: 108  KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             +        I+ NL   A      G  +T+S++D+ N  +  +K  GN     E+    
Sbjct: 934  ILCDPNYLELIVNNLLSNAFKHTEEGQSITVSLKDTGNNLLLQVKDTGNGIPLEEQKKIF 993

Query: 168  VDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +S+     I    V  L   +   +  +  +      S  L 
Sbjct: 994  ERFYQVKSSHTGSGIGLSLVQRLVELHHGHIELDSAEGVGSTFSIFLP 1041


>gi|148380235|ref|YP_001254776.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 3502]
 gi|153932222|ref|YP_001384539.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|153934849|ref|YP_001388055.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
 gi|148289719|emb|CAL83824.1| two-component sensor kinase [Clostridium botulinum A str. ATCC
           3502]
 gi|152928266|gb|ABS33766.1| sensor histidine kinase [Clostridium botulinum A str. ATCC 19397]
 gi|152930763|gb|ABS36262.1| sensor histidine kinase [Clostridium botulinum A str. Hall]
          Length = 303

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S I HDI +P+ A+   ++LL +  I  E  +            LK +   F     +
Sbjct: 82  MISNISHDIRTPLTALMGYVDLLSDNSITKEKKEEYISIIRERGTALKDLMEEFFQMAKL 141

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLN 121
           +       IE+     +     +                        +      ++I+ N
Sbjct: 142 ECNDVEITIEKFNITEVVRKNIITFMNEINERTITPEINIGDEEIFALGDKNYTSRIITN 201

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   +      G  + I +++       S+   G      E    F ++  G        
Sbjct: 202 LISNSLKYGYEGNVIGIDLKEDNKWVTLSIWDKGKGIDKNELPYIFDRLYTGEKSRNRSF 261

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +A      +  + I     + +  + K
Sbjct: 262 QGSGLGLSIVKNMAQHMNGSITAQSIPYEKTIFTVKIPK 300


>gi|86138915|ref|ZP_01057487.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. MED193]
 gi|85824562|gb|EAQ44765.1| phosphate regulon sensor histidine kinase, putative [Roseobacter
           sp. MED193]
          Length = 347

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 18/238 (7%), Positives = 56/238 (23%), Gaps = 27/238 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSM 58
           ++     +  +     + + H++ +P+ A+   +E L     +D       + ++   + 
Sbjct: 108 DVTEREQANQMRRDFVANVSHELRTPLTALMGFIETLRGAARDDADARDRFLSIMEGEAS 167

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------ 106
                +  +                               +                   
Sbjct: 168 RMNRLVGDLLSLNRVESKERIRPKEELDLVAHLASTLKTMQPLADADNVSLKFTPPSEPV 227

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLA--- 158
             I    +  ++ +NL   A        ++T+ + +             +  NG      
Sbjct: 228 MIIGDPDQLLQVFMNLIENAIKYGGDQVEMTVELLERDPSLRTAAVRVKVMDNGAGIDPI 287

Query: 159 RFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P    +    +           +    V  + + ++ RL            +  L 
Sbjct: 288 HLPRLTERFYRADNHRSREQGGTGLGLAIVKHIVNRHRGRLRVSSDLGVGTCFAVTLP 345


>gi|329935640|ref|ZP_08285447.1| two component system sensor kinase [Streptomyces griseoaurantiacus
           M045]
 gi|329304901|gb|EGG48772.1| two component system sensor kinase [Streptomyces griseoaurantiacus
           M045]
          Length = 580

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 67/234 (28%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQ 51
           + K +    S  +      + + H++ +P+ AI    E+L+E           + +  ++
Sbjct: 317 LEKKVADMSSREEASRRFVADMSHELRTPLTAITAVTEVLEEELDAETGSVDPMIEPAVR 376

Query: 52  LIRLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           L+   +      ++ +     +             +       +          +     
Sbjct: 377 LVVSETRRLNDLVENLMEVTRFDAGTARLVLDHVDLADQITACIDARAWLDAVELDAERG 436

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
                  R    IL NL   A         V ++V+    + +  ++ +G        P 
Sbjct: 437 LMANLDPRRLDVILANLIGNALKHGG--SPVRVAVRTDGEDLLIQVRDHGPGIPEEVLPH 494

Query: 163 KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +    +      +   +     +  AH +   +      +   V +  L +
Sbjct: 495 VFDRFYKASASRPRSEGSGLGLSIAMENAHIHGGGITAANSPEGGAVFTLRLPR 548


>gi|315181686|gb|ADT88599.1| sensor histidine kinase LuxQ [Vibrio furnissii NCTC 11218]
          Length = 858

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 61/241 (25%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  I    +LL     E E  + + +   
Sbjct: 465 KQSRIARKEAEESARVRADFLAKMSHELRTPLNGILGVSQLLKRTVTEKEQAEQVNVLCS 524

Query: 59  SAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDK-----RVQV 102
           S    L  +     ++                +  +  IE++                 +
Sbjct: 525 SGEHLLAVLNDILDFSKIEQGKFRIQKADFPLVDVVSAIERIYRPLCREKGLTLTLNTNI 584

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLAR 159
                         +IL NL   +           ++ +   ++  +   ++   G   R
Sbjct: 585 GDDLVVRTDQVRLNQILFNLLNNSVKFTHEGAINIQLHLIETEAGAKLEITVLDTGVGIR 644

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +                 +    V  L       +  +         +  L
Sbjct: 645 EQDL-ALIFEPFVQAESTNTREYGGSGLGLAIVHSLIEMLGGSIEVKSSFGVGTRFTIEL 703

Query: 214 E 214
            
Sbjct: 704 P 704


>gi|311693679|gb|ADP96552.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 957

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 58/236 (24%), Gaps = 27/236 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               L +  + +   + + H+I +P+  I    ELL +  +  +    +     S+ I L
Sbjct: 282 RKEALEASRIKSEFLANMSHEIRTPLNGIIGFTELLLKSPLPRQQRDHLSTIRKSSEILL 341

Query: 65  KFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK 108
             +     ++                   + ++  ++              V        
Sbjct: 342 TIINDILDFSKIEAGKLILDRVPFQLRDIVEEVMVMLAPAAHAKNLDLVPLVYNDVPDNI 401

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPE 162
           +       +++ NL   A      G               ++     S+  +G      +
Sbjct: 402 MGDPLRVKQVITNLVNNAIKFTQTGEVVLRASLEEEEADTNRVTLRLSITDSGVGLSRAQ 461

Query: 163 KFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           + +     +              +       L  E   ++  E            L
Sbjct: 462 QQSLFNAFSQADASTARQYGGTGLGLAISKRLVEEMGGKIGLESELGKGSTFWFTL 517


>gi|331671946|ref|ZP_08372742.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA280]
 gi|331070935|gb|EGI42294.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA280]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLMLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|251790510|ref|YP_003005231.1| sensor protein KdpD [Dickeya zeae Ech1591]
 gi|247539131|gb|ACT07752.1| Osmosensitive K channel His kinase sensor [Dickeya zeae Ech1591]
          Length = 909

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 70/236 (29%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQL 52
           A+N   +     L   L + + HD+ +P+  +    E+L                ++ Q 
Sbjct: 660 AENSRLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLNLASEGSPYAPQASQIRQH 719

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKI 109
           I  ++      L   R+             L ++       +        +Q+    + +
Sbjct: 720 ILSTTRLVNNLLDMARIQSDGFSLRKEWQTLEELIGSALRQLENSLASNTIQLRLPQDML 779

Query: 110 DLSRE---RAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLAR-- 159
            +  +     ++L+NL   A                +S   + +     ++ NG      
Sbjct: 780 LVYCDASLIERVLINLLENAIKYAGEQATILVSASRVSSSVASDLLEVQIQDNGPGIPAG 839

Query: 160 -FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F +   G+ ES+I    +       +   +  R+     D+   V    L 
Sbjct: 840 QEKMIFDKFARGHKESSIPGVGLGLAICRAIVEIHGGRIWATNADEGGAVFHFTLP 895


>gi|197334242|ref|YP_002154865.1| nitrogen regulation protein NtrB [Vibrio fischeri MJ11]
 gi|197315732|gb|ACH65179.1| nitrogen regulation protein NtrB [Vibrio fischeri MJ11]
          Length = 347

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ I  +        +L   + H+I +P+G +  + +LL+ +  E E+ +  ++    A
Sbjct: 115 LSQEINQHAQQQA-AKVLVRSLAHEIKNPLGGLRGAAQLLERMLPERELHEYTQIIIEQA 173

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +         G     +    +  + Q+IE   +   ++   +     D   + 
Sbjct: 174 DRLRNLVDRLLGPQKLGTKQPENLHAIIEKVRQLIELNSSYQVKIIRDYDPSLPDFDVDA 233

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  Q  K      +  NG     
Sbjct: 234 EQIEQAILNIVSNAAEVLKDQPDGTITLKTRTDFQTNIYGQRHKLAAKIDIIDNGPGI-P 292

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V +      +       L  ++  ++          + +  L 
Sbjct: 293 SHIQDTLFYPMVSAREGGTGLGLSISQNLIDQHNGKIDVSSWPGK-TIFTIYLP 345


>gi|218439784|ref|YP_002378113.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218172512|gb|ACK71245.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 1478

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/246 (9%), Positives = 55/246 (22%), Gaps = 33/246 (13%)

Query: 2    AKNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
             +     L    L                + + H++ SP+  I    +LL     +    
Sbjct: 1082 QEEQKRLLEREKLAREEAERVNRIKDEFLAVLSHELRSPLNPILGWAQLLRSGSFDKANQ 1141

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                            +         +       ++ Q+   F        V  + +   
Sbjct: 1142 NKALEIIERNAKLQAQLIEDLLDVSRILRGKLSLNVTQLNLFFPIQGAIETVRLSAQAKS 1201

Query: 111  LSR----------------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
            +                     +I+ NL   A    P GG++ I ++   ++   ++K +
Sbjct: 1202 IEIKTNLATDVVQISGDAGRIQQIVWNLLSNAIKFTPEGGQIEIGLEQVNHQAQITVKDS 1261

Query: 155  GNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVV 208
            G                              +    V  L   +   +      ++    
Sbjct: 1262 GKGIDPQFLPHVFEHFRQADSTTTRKFGGLGLGLAIVRHLVEMHGGTVSAYSAGENQGST 1321

Query: 209  LSALLE 214
                  
Sbjct: 1322 FIVQFP 1327


>gi|153005457|ref|YP_001379782.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029030|gb|ABS26798.1| PAS/PAC sensor signal transduction histidine kinase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 448

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 61/217 (28%), Gaps = 16/217 (7%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKFM---- 67
           +L     S   H+  +P+  I    +LL      E + + +I+         ++ +    
Sbjct: 226 ELRDEFLSTAAHEFKTPLAVIKAYAQLLQKREPAEAQALVVIQRQVDRLNRLVQHLLDTT 285

Query: 68  ----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                +        D      ++   +            S            A+++ +L 
Sbjct: 286 RLRLDVRDERLHRFDLGALADEVVGRMRGSAPAHDITVSSVPAPVRADRERLARVITSLV 345

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------STID 177
             A    PRGG V   V+      +FS++  G     PE+  +I +              
Sbjct: 346 DNAIRFSPRGGPVAARVEARDGAAVFSVEDRGLGI-APERQARIFERYYRAHAGTPQDYG 404

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +   +  R+  E    H       + 
Sbjct: 405 GLGLGLDMSREIVARHGGRMWFESTPGHGSTFHFSVP 441


>gi|83643847|ref|YP_432282.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83631890|gb|ABC27857.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 830

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 62/251 (24%), Gaps = 39/251 (15%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           +A+     L + +         +L  + + H+I +P+  I   LELL    +  E  ++I
Sbjct: 166 LAETNRKLLEAKEAAESANEAKSLFLATMSHEIRTPMNGILGMLELLSHSQLSAEQTKMI 225

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------------AVD 97
                SA   L  +     ++      + L +I   +E+ I                 + 
Sbjct: 226 STVRDSAFSLLNILNDILDFSKIEAGRMELENITLSVEEIIEGVAETVAASANKRNLHLH 285

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---------NENI 148
             V        +       +IL NL   A         +   V                 
Sbjct: 286 CYVDPDIPDALVGDEVRLRQILFNLCSNATKFTDTANGLQGCVTLRADLLHSAGQLYSIR 345

Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202
            S+K NG          ++                   +       L       +     
Sbjct: 346 ISVKDNGIGMDQVTL-DKLFSPFTQGESSTTRRYGGTGLGLSICKRLTEIMGGAIEVASE 404

Query: 203 DDHNVVLSALL 213
                     L
Sbjct: 405 PGQGTEFRLNL 415


>gi|330807932|ref|YP_004352394.1| histidine kinase, Classic [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376040|gb|AEA67390.1| Putative Histidine kinase, Classic [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 489

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 64/216 (29%), Gaps = 4/216 (1%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + I   L+     + L S I HD+ +PI  +   +ELL++  ++ +  + +    +  
Sbjct: 274 MRERISRYLTE---RSQLFSAISHDLRTPITRLRLRVELLEDENLQAKFGRDLDELELLV 330

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L+ ++    +       +       V                        +   +  
Sbjct: 331 KGALQCVKDTDIHENIEPVDLNHVLDCLVEPYLAPNGNGRVTQDGRALAPYPGKPLALKR 390

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSH 179
            +  +   +L  G    + + D +   I  +   G                        +
Sbjct: 391 CIGNLIDNALKYGQNAHLHIDDDETAFILHVDDEGPGVPEQRLEQVFEPHFRLAGQQQGY 450

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +       +AH +   +  + + +  + ++  L +
Sbjct: 451 GLGLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPR 486


>gi|300867388|ref|ZP_07112044.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
 gi|300334639|emb|CBN57212.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
          Length = 1120

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 67/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     + +  + +   + + H+I +P+  +    +LL  + +E +  +  +    SA
Sbjct: 400 LVEAREAAIEASRVKSQFLANMSHEIRTPMNGVLGMAQLLLRLSLEAKPREYAQTIYRSA 459

Query: 61  IIRL-------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---------DKRVQVSW 104
              L        F ++  G          L    + + + +           +  ++ S 
Sbjct: 460 EHLLSVINDILDFSKIEAGEMRLETLDFDLDVCIESMVEMVVATAEEKGLELNVLIESSV 519

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
             +         +ILLNL   A     RG  +            + IFS++ +G      
Sbjct: 520 PRQLQGDPGRLKQILLNLVNNAIKFTDRGQVLVRVSLKSSTVDRKLIFSVRDSGIGISPE 579

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +          DG+         +       L       +               + 
Sbjct: 580 GQKKLFQSFSQVDGSPTRQYGGTGLGLVICKQLVEMMGGEIGVRTSVGKGSNFWFTIP 637


>gi|322434309|ref|YP_004216521.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321162036|gb|ADW67741.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 482

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 54/234 (23%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLS 56
            K     + S  L A+  L S I H+I +P+ A+ N L L +         + ++   + 
Sbjct: 241 KKTEMALIQSEKLAAVGRLASSIAHEINNPLEAVTNLLYLAERTDDLTEVRQYLRDAEVE 300

Query: 57  SMSAIIRLKFMRLAFGYTG------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                            +         + +     I Q       ++             
Sbjct: 301 LRRVAAITAQTLRFHKQSTDAQAVTMEELIRSALSIFQGRLANSPIEVVECFHAQQPVRC 360

Query: 111 LSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              E  ++L NL   A  S+           +   + +             G       +
Sbjct: 361 FEGEIRQVLSNLLGNALDSMSAEGGRLLIRTQTATNWRTGDRGVAILFGDQGTGIDAKFR 420

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII--DDH-NVVLSALLE 214
                       I    +  +    +   +   +             +    L 
Sbjct: 421 AKLFEPFFTTKGIMGTGLGLWVSKGIIDRHHGTIAVRSRQMPGASGTIFRIWLP 474


>gi|262372669|ref|ZP_06065948.1| signal transduction histidine kinase [Acinetobacter junii SH205]
 gi|262312694|gb|EEY93779.1| signal transduction histidine kinase [Acinetobacter junii SH205]
          Length = 369

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 67/238 (28%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
                 +    +   L   + H+I +P+  I  + +LL     +D   +   +       
Sbjct: 126 SKEENLVQQHQVARQLVRGVAHEIKNPLAGIRGATQLLARSLSDDSYREFTDIIINEVDR 185

Query: 63  RLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116
                    G         V+    L  +  +I +      ++   +     D+  +R  
Sbjct: 186 LTNLADTMLGSRQLPSYEHVNVHEPLERVRSLIANQTKKKIKITRDYDLSLPDVMADRDQ 245

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQD------------------SKNENIFSLKINGN 156
             +++LN+ + A  ++    +  +  +                   +++     ++ NG 
Sbjct: 246 LIQVMLNISVNAVQAMTENKEFFVDSEPELTLRTRIQRLVTINGVLNRSTVRVDIEDNGP 305

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V        +       + H++   +  + I     + S  L 
Sbjct: 306 GVPES-ILESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSIPGK-TIFSLYLP 361


>gi|163742074|ref|ZP_02149463.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
 gi|161384795|gb|EDQ09175.1| sensor histidine kinase/response regulator [Phaeobacter
           gallaeciensis 2.10]
          Length = 764

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 51/227 (22%), Gaps = 29/227 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------L 64
           A L   + H+I +P+  +    ELL +  + DE          S                
Sbjct: 218 AFLA-NMSHEIRTPMNGVVGMAELLSDTNLSDEQQLYANTIKNSGEALLVIINDVLDYSK 276

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKIL 119
              +    +    D    + ++  +++               +      +       ++L
Sbjct: 277 IEAQKLELHPEPFDLERSVHEVLMLLQPTARDKGLTLLLDYDLFLPTSFVGDPGRIRQVL 336

Query: 120 LNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            NL   A      G         S           +++  G      +      + N   
Sbjct: 337 TNLVGNAVKFTSEGHVALQITGISNADDKICSIHVTIEDTGIGIPEEKVQDIFGEFNQVE 396

Query: 173 ---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL--LE 214
                  +   +       L       +  E  +           L 
Sbjct: 397 DERNRQFEGTGLGLAISKRLIELMGGEIWVESQEGKGSCFGFRMELP 443


>gi|153212449|ref|ZP_01948218.1| sensor histidine kinase [Vibrio cholerae 1587]
 gi|124116486|gb|EAY35306.1| sensor histidine kinase [Vibrio cholerae 1587]
          Length = 497

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLA---- 70
           L + + HD+ +P+GAI  S   L +  +    +   +L+   +       + +       
Sbjct: 273 LLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQRELLTSIAEQGERLNRSLTKLLDIT 332

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        V+    +G +   +   +   K    S        S    ++L+NL 
Sbjct: 333 RYTATALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIESQPMLVELDSLLIEQVLINLV 392

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHD 180
             A    PRG ++ I+      +   ++  NG      E   +I D       +  D   
Sbjct: 393 ENAAKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PDEALPRIFDRFYRVEGNHADGTG 451

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      ++   ++  +     +      +  + 
Sbjct: 452 LGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|157963829|ref|YP_001503863.1| osmolarity sensor protein [Shewanella pealeana ATCC 700345]
 gi|157848829|gb|ABV89328.1| histidine kinase [Shewanella pealeana ATCC 700345]
          Length = 440

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 8   NLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRL 64
           ++  ++   ALL + I HD+ +P+  I  + E++  ++  ++D ++  I          +
Sbjct: 228 SMKQLEQDRALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDAIINQFI 287

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            ++R     T  ++ +  L       E     D   ++         +    +++ NL  
Sbjct: 288 SYIRQDQEGTRELEQINILIQDVIQAESNREGDIESELVTCPIVPMQAIAVKRVISNLVE 347

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A+      G V I+ Q +     FS++ NG      +    F     G+         +
Sbjct: 348 NAYRY--GNGWVRINSQFNGKYVGFSVEDNGPGIDEEQIPKLFQPFTQGDTARGSVGSGL 405

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   ++ +++     +  +     L 
Sbjct: 406 GLAIIKRIVDRHQGKVILTNRSEGGLHAQVWLP 438


>gi|94265383|ref|ZP_01289137.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93454136|gb|EAT04465.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 410

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 67/242 (27%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSM 58
           +N  F    ++ + +L   I HD  + +  I      +L +          ++ IRL++ 
Sbjct: 23  ENQLFQARKLESIGVLAGGIAHDFNNILTPIIMRSGMALTMAPADSPLRRNLEQIRLAAE 82

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKI 109
            A   +  +      +      + L  + +    F+       ++               
Sbjct: 83  RAKTLVGQILEFSRQSDHKPRKLALEPVVKETLKFMRSTLPANIALEFTGHGGGGQDMVN 142

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---------------NENIFSLKIN 154
                  ++++NL   A  ++ R G       +                 +    ++  +
Sbjct: 143 ADPTRITQVIMNLVTNAAHAMRRQGGRVTVSLERWADGGKAPAPGLPADQDYLQLTVSDD 202

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     PE   +I +    +    +   +    V  +       +     +      +  
Sbjct: 203 GEGI-PPEIIPRIFEPYFTTKRRGEGSGMGLAMVHGIVKALGGAITVHSTEGEGTTFNVF 261

Query: 213 LE 214
           L 
Sbjct: 262 LP 263


>gi|298500439|ref|ZP_07010243.1| nitrogen regulation protein [Vibrio cholerae MAK 757]
 gi|297540608|gb|EFH76665.1| nitrogen regulation protein [Vibrio cholerae MAK 757]
          Length = 371

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 136 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQA 194

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 195 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDYDPSLPNILMDT 254

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 255 DQIEQALLNIVSNAAQILTNQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 313

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 314 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 366


>gi|295108639|emb|CBL22592.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA
           gyrase B-, and HSP90-like ATPase./HAMP domain.
           [Ruminococcus obeum A2-162]
          Length = 382

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 68/222 (30%), Gaps = 24/222 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           L S I HD+ +PI A+   +E + +      E M     +  +    +  +     +   
Sbjct: 154 LISNISHDLKTPITAVKGYVEGIMDGVADTPEKMDRYVRTIYNKTNEMDHLINELTFYSK 213

Query: 77  VDSLIGLGDIEQVIEDFIAVDKR-----------------VQVSWTGEKIDLSRERAKIL 119
           +D+        ++  D    D                     V      I    +  +++
Sbjct: 214 IDTNRIPYTFSKLNVDDYFSDCAEEVGLELETRGIQLYYANYVEKDVLVIADGEQIRRVI 273

Query: 120 LNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST 175
            N+   A   + +    + I V+D  +     ++ NG      +    F +    +V   
Sbjct: 274 HNIISNAIKYMDKPKGVIQIRVKDVGDFIQVEIEDNGKGIASKDLTYIFDRFYRTDVSRN 333

Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  I    V  +  ++  ++     +    ++  +L K
Sbjct: 334 SSKGGSGIGLSIVRKILEDHGGKVWATSREGIGTIMYFVLRK 375


>gi|293399744|ref|ZP_06643890.1| sensor histidine kinase [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291306144|gb|EFE47387.1| sensor histidine kinase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 458

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 65/237 (27%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRL 55
           MA+     L+ M+          S + H++ +P+  I    E LL E   ++   + +++
Sbjct: 214 MAETFDKLLAQMEDSLQREQQFTSDVSHELRTPLTTILMQCEQLLHEKQKDEASTKELKV 273

Query: 56  SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
               AI                +   +L        +      +  Q+  +   +     
Sbjct: 274 IQQKAIAMRNIISQLLLLSRADMGNAQLTMEPLNFSELSAYAIEEIQLQAEKKQIQITSD 333

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +              +  +N+   A       G + + V+  ++     +  +G      
Sbjct: 334 IQNNIMVYGDQTLLIRFWMNVLHNAIQYGKEQGHLFLQVKLMEDHVQIVVDDDGIGIAEE 393

Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    + +    +       S  +    V  +   +      +         +  L 
Sbjct: 394 QLPYIWNRFYRCDSARNNSTSSGLGLSMVKWIIEAHGGLCDVKSCYGKGTTFTFTLP 450


>gi|119476572|ref|XP_001259199.1| two-component sensor protein histidine protein kinase (dhkk, dhkj)
            [Neosartorya fischeri NRRL 181]
 gi|119407353|gb|EAW17302.1| two-component sensor protein histidine protein kinase (dhkk, dhkj)
            [Neosartorya fischeri NRRL 181]
          Length = 2285

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 60/228 (26%), Gaps = 33/228 (14%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------LKFMR 68
            + I H++ +P+  +  + ELL    + +  +++     MSA +                 
Sbjct: 1890 ANISHELRTPLNGVIGNSELLLNSPVPEAQLEMAESIRMSANLLLAVINDILDFSKVEAN 1949

Query: 69   LAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTGEKIDLSRERAKIL 119
                +    D    + ++ + I                  +Q+  T           +IL
Sbjct: 1950 KMQLHVVPFDVERMVMEVVRSIPTDSKNGPRSSNVHIVHDIQLQETRHVCGDPVRLRQIL 2009

Query: 120  LNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKFTQIVDGNVE-- 173
             NL   +     +G     +  +++        F +   G          ++     +  
Sbjct: 2010 GNLLGNSLKFTEKGTITIGARAENETEDSVRLSFWVADTGIGI-PSALIPRLFRPFTQAD 2068

Query: 174  ----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLEK 215
                       +      LL       +  +  +        +  L K
Sbjct: 2069 ASTARRFGGTGLGLSICKLLVELMGGTIDLKSTEHVGTTVSFAVTLPK 2116


>gi|51245341|ref|YP_065225.1| Ntr two-component system sensor histidine kinase [Desulfotalea
           psychrophila LSv54]
 gi|50876378|emb|CAG36218.1| related to two-component system sensor histidine kinase (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 572

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 64/224 (28%), Gaps = 23/224 (10%)

Query: 13  DLVAL--LCSRICHDIISPIGAI---HNSLELLDEVGIEDEVM-----------QLIRLS 56
            L ++  L + + H+I +P+  +   +   E L  +  + E             Q I   
Sbjct: 342 KLASIGRLAAGVGHEINNPLAIVNQKNGLAEDLLSLSPDFEHRAAISKCLKSIDQNIERC 401

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWT---GEKIDLS 112
                  L F R        V     + D+   +    +     + +       +    +
Sbjct: 402 KTITHRLLGFARRGEVELREVQINDIIRDVLSFLENSIMYSKINLVLRLEGGLPDVYGNN 461

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++ LN+   A  + P  G +TI+      E    ++  G      E    I +   
Sbjct: 462 VQLQQVFLNIINNAIDATPDDGNITITTHLLAEEVQIIIQDTGEGI-SKEYLPHIFEPFF 520

Query: 173 ESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +        +       L  +    ++ +         +  + 
Sbjct: 521 TTKETGKGTGLGLSITYGLVKKMGGDIIVQSHIGGGTAFTITIP 564


>gi|145222174|ref|YP_001132852.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium gilvum PYR-GCK]
 gi|145214660|gb|ABP44064.1| integral membrane sensor signal transduction histidine kinase
           [Mycobacterium gilvum PYR-GCK]
          Length = 535

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 58/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   +M  I+  S    + ++ + L           
Sbjct: 277 SHELRTPLTTIRGFAELYRQGAARDVEMLMGRIKSESRRMGLLVEDLLLLARLDAQRPLE 336

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----------ERAKILLNLFMVAHAS 129
               D+  +  D +   + +                           ++L NL   A   
Sbjct: 337 HRRVDLLALASDTVHDAQSIAPKRRIRMEVFDGPGTPEVLGDEARLRQVLSNLVANALQH 396

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V  + +  I  +   G      +    F +    +           +   
Sbjct: 397 TPESAGVTVRVGTADDTAIVEVCDEGPGMTGEDAQRVFERFYRADSSRARASGGTGLGLS 456

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L + +  R+            +  L +
Sbjct: 457 IVDSLVYAHGGRVSVTTAPGCGCRFTVRLPR 487


>gi|332761651|gb|EGJ91930.1| phosphate regulon sensor kinase PhoR [Shigella flexneri 2747-71]
 gi|332768504|gb|EGJ98687.1| phosphate regulon sensor kinase PhoR [Shigella flexneri 2930-71]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|301053449|ref|YP_003791660.1| sensor histidine kinase [Bacillus anthracis CI]
 gi|300375618|gb|ADK04522.1| sensor histidine kinase [Bacillus cereus biovar anthracis str. CI]
          Length = 355

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 113 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHANGEECEQYVS 172

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S          +         ++    + +++ ++E  +                
Sbjct: 173 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCM 232

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I +          +K  G     
Sbjct: 233 KGDKGLHVEMDVALMVRVFENVISNSIMYGKDGKEILIQMSKRDMNVEIEIKNWGQCIPD 292

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     D    V + +L 
Sbjct: 293 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIAKSIAELHKGDIAVRSNDKE-TVFTIVLP 350


>gi|262376904|ref|ZP_06070131.1| phosphate regulon sensor kinase PhoR [Acinetobacter lwoffii SH145]
 gi|262308249|gb|EEY89385.1| phosphate regulon sensor kinase PhoR [Acinetobacter lwoffii SH145]
          Length = 452

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 57/215 (26%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---------- 70
            I H++ +P+  +   +E   +    +   +       S   R+  +             
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQEDINPRWKRAFDQMQSQTRRMNALVNDLLLLSRLEND 290

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                         +  L D  Q           + +    + I    E A    NL   
Sbjct: 291 KNIAKNQIIEMPSLMNQLFDDAQAYNIDYGHTLNLDIDSHCDLIGSDMELASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVESTIDSHD 180
           A    P+GG +TI   D      F ++ NG             +      +         
Sbjct: 351 AIKYTPKGGTITIGWHDDGESAYFVVQDNGIGIDPKHLPRLTERFYRIDSDRSRRTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  +++  L  E  ++       +  K
Sbjct: 411 LGLAIVKHVLMQHQAHLEIESKENQGSTFKVVFPK 445


>gi|255320446|ref|ZP_05361627.1| nitrogen regulation protein NR [Acinetobacter radioresistens SK82]
 gi|262378342|ref|ZP_06071499.1| signal transduction histidine kinase [Acinetobacter radioresistens
           SH164]
 gi|255302418|gb|EET81654.1| nitrogen regulation protein NR [Acinetobacter radioresistens SK82]
 gi|262299627|gb|EEY87539.1| signal transduction histidine kinase [Acinetobacter radioresistens
           SH164]
          Length = 369

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 64/232 (27%), Gaps = 28/232 (12%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           +    +   L   + H+I +P+  I  + +LL     + +  +   +             
Sbjct: 132 IQQHQVARQLIRGVAHEIKNPLAGIRGATQLLARSLNDPQYAEFTDIIINEVDRLRNLAD 191

Query: 69  LAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           +  G         V+    L  +  +I +      ++   +     ++  +R +++  + 
Sbjct: 192 IMLGSRQLPSYENVNIHEPLERVRSLIANQTKNKIKIVRDYDLSLPEVHADRDQLIQVML 251

Query: 124 M---VAHASLPRGGKVTISVQD------------------SKNENIFSLKINGNLARFPE 162
                A  ++       +  +                    ++     ++ NG      E
Sbjct: 252 NIGANAVQAISENRDFFVHHRPELIFRTRIQRLVTINGLLHRSAIRIDIEDNGPGV-PEE 310

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V        +       + H++   +  + +     + S  L 
Sbjct: 311 IQESVFYPLVTGRAKGTGLGLSIAQNIMHQHNGMIECQSVPGQ-TIFSLYLP 361


>gi|225575436|ref|ZP_03784046.1| hypothetical protein RUMHYD_03526 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037381|gb|EEG47627.1| hypothetical protein RUMHYD_03526 [Blautia hydrogenotrophica DSM
           10507]
          Length = 454

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 67/242 (27%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRL 55
           +A+     L  ++          S   H++ +P+  I +  E LL++  +  E  + + +
Sbjct: 211 LAQTFDRMLEKLEAAFEKEKQFTSDASHELRTPVTVILSQCEYLLEDAELSKEERESVEV 270

Query: 56  SSMSAIIRLKFMRL--------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
               A    + +                   Y           + +Q       +    +
Sbjct: 271 IRRKAQNMARMISQLLFLSRADQNRQTIHKEYLDLTLLTEIAVEEQQEFAQARGIRIETE 330

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +      +       +I +NL   A      GG + + +         S++ NG      
Sbjct: 331 IQDGIHGMADETLFIRIWMNLIGNAIVYGRDGGWIKVGLSQRGEVVRGSVQDNGIGIAEK 390

Query: 162 EKFTQIVDGNVE-------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VLSAL 212
               +I +   +           S  +    V  +   +   +  E         V   L
Sbjct: 391 HLP-RIWERFYQVESSRSAREETSSGLGLPMVKWIVEAHGGTITAESEYGKGTKFVFEIL 449

Query: 213 LE 214
           L+
Sbjct: 450 LQ 451


>gi|298489942|ref|YP_003720119.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
            0708]
 gi|298231860|gb|ADI62996.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
            0708]
          Length = 1138

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 61/238 (25%), Gaps = 24/238 (10%)

Query: 1    MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEV 49
            + + +   L        L +   S   H+  +P+  I +S ELL+       E  +   +
Sbjct: 895  LEQELRTALEKEKELNELKSRFISMTSHEFRTPLSTILSSAELLEHYHQRWTEEKLLIHL 954

Query: 50   MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQV 102
             ++         +    + +     G ++      D+ +     +            +  
Sbjct: 955  RRIQTAVHRMTEMLDDILVIGKAEAGKLEYKPLFFDLVEYCRQLVEEVRLNLKSQHLIFF 1014

Query: 103  SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +   + I    +   +   L      A    P G  V  ++     + +  ++  G    
Sbjct: 1015 TSQCKSISCYMDDKLLGYILSNLLSNALKYSPDGSLVRFTLACKNEQAVLKIQDQGIGIP 1074

Query: 160  FPEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +          + +       +    V      +   +            +  L 
Sbjct: 1075 EENQPRLFESFYRANNVGNILGTGLGLAIVKKCVDIHNGEIYFTSQLGIGTQFTVKLP 1132


>gi|209516225|ref|ZP_03265083.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia sp. H160]
 gi|209503336|gb|EEA03334.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia sp. H160]
          Length = 942

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 71/243 (29%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQL 52
           A++   ++ S  L   L S I HD+ +P+ AI     LL          +    +   ++
Sbjct: 662 AQDALISMESERLRNSLLSAISHDLRTPLTAIVGFASLLAQPGHGEKAGQPAANELGEEI 721

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVS 103
              +     I    + +     GS+        +E+VI   +A                +
Sbjct: 722 YDEAMRMTAIVTNLLDMVRLQEGSMRLNRQWSSLEEVIGAALAASRRLLSGRTLYTHVPT 781

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA- 158
                   +    ++L NL   A    P G  VTI+    +         +++ NG    
Sbjct: 782 DLPLVQLDAVLMERLLANLLDNAAKYTPAGSPVTINAAAVEENGRRYVRVNVEDNGPGLS 841

Query: 159 --RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLSA 211
                  F +   G  ES +    +       +   +  ++                   
Sbjct: 842 PGMESRVFDKFTRGEKESALPGIGLGLAICRAIVEAHGGKISAANRTGPNGTLLGACFWF 901

Query: 212 LLE 214
           +L 
Sbjct: 902 MLP 904


>gi|123443916|ref|YP_001007887.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090877|emb|CAL13759.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia enterocolitica subsp. enterocolitica 8081]
          Length = 778

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 62/217 (28%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A     +G  V    ++S +  IF ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGEIVVRVRRESNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  + +       +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSVQGAGSCFTLTIK 504


>gi|120611639|ref|YP_971317.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
 gi|120590103|gb|ABM33543.1| PAS/PAC sensor hybrid histidine kinase [Acidovorax citrulli
           AAC00-1]
          Length = 889

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 66/243 (27%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55
           A+        M+ V  L   + HD  + +  I  SLELL+    +     L R       
Sbjct: 504 AQEALRQSQKMEAVGQLTGGLAHDFNNLLATISGSLELLNRRVAQGRFDDLARYVAVGQG 563

Query: 56  ----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R         D    +  +E++I   I  +  ++V         
Sbjct: 564 AARRAASLTHRMLAFSRRQTLDPKPTDVNRLVRGMEELIRRTIGPETELEVVNAVGLWTT 623

Query: 112 SRERAKIL---LNLFMVAHASL--------------PRGGKVTISVQDSKNENIFSLKIN 154
             +  ++    LNL + +  ++                                  +   
Sbjct: 624 HVDPHQLESALLNLCINSRDAMPGGGRLTIETANAWMDERAGRERDLPPGQYVSLCVTDT 683

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     PE   +I +    +        +    V   A ++  ++           +   
Sbjct: 684 GTGM-APEVMRRIFEPFFTTKPIGMGTGLGLSMVYGFARQSGGQVRAYSEPGMGTTMCIY 742

Query: 213 LEK 215
           L +
Sbjct: 743 LPR 745


>gi|150392422|ref|YP_001322471.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
 gi|149952284|gb|ABR50812.1| integral membrane sensor signal transduction histidine kinase
           [Alkaliphilus metalliredigens QYMF]
          Length = 382

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 64/237 (27%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIR 54
           + K+    L  ++          +   H++ +P+  +   +++L  D+    +E  +   
Sbjct: 145 LTKSFNQALERLEEAFNRQKRFSASAAHELKTPLATMKAGIQVLKIDKSTTLEEYKENAH 204

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +   S     + +          +    L +   +   F  +   +   +    I  + E
Sbjct: 205 MMEASVDRLTQVVNDLLIMASPNEETDELKEEVYLDVMFETIFDELSPVYEYRGITYNIE 264

Query: 115 R------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         +   NL   ++      G +T+    +       ++  G       
Sbjct: 265 CDAISFHGNAALLYRNFFNLIDNSYKYNREKGSITVRGSKTNKCVSIDVEDTGIGIPAEH 324

Query: 163 KFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      DG+    I    +    V  +   +   +     +     +S  L 
Sbjct: 325 IPFIFDAFYRVDGSRSRKIAGSGLGLSIVKSIIERHGGTISVSSENVKGTKISIQLP 381


>gi|15596125|ref|NP_249619.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|107100384|ref|ZP_01364302.1| hypothetical protein PaerPA_01001409 [Pseudomonas aeruginosa PACS2]
 gi|116048851|ref|YP_792348.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218893103|ref|YP_002441972.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
 gi|254239279|ref|ZP_04932602.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|254245212|ref|ZP_04938534.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|296390719|ref|ZP_06880194.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PAb1]
 gi|9946832|gb|AAG04317.1|AE004527_4 sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
 gi|2623815|gb|AAB86557.1| two component sensor [Pseudomonas aeruginosa PAO1]
 gi|115584072|gb|ABJ10087.1| sensor/response regulator hybrid [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126171210|gb|EAZ56721.1| sensor/response regulator hybrid [Pseudomonas aeruginosa C3719]
 gi|126198590|gb|EAZ62653.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 2192]
 gi|218773331|emb|CAW29143.1| sensor/response regulator hybrid [Pseudomonas aeruginosa LESB58]
          Length = 925

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +       +     SA
Sbjct: 272 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSA 329

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      V    
Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
             +     +   +IL NL   A      G     ++ + ++    +   S++  G     
Sbjct: 390 PIQLQGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDESDDRAQLRISVQDTGIGLSE 449

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            ++       +              +       L  +    +  +           S  L
Sbjct: 450 EDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL 509

Query: 214 EK 215
            K
Sbjct: 510 PK 511


>gi|328470886|gb|EGF41797.1| putative sensory box sensor histidine kinase/response regulator
           [Vibrio parahaemolyticus 10329]
          Length = 873

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 64/239 (26%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M K +   L          +   + + H+I +P+ AI    E+L E     E  +L+ L 
Sbjct: 357 MEKRLSSALDKSKKATQAKSEFLANMSHEIRTPMNAIMGISEILLENENRREPRELLLLL 416

Query: 57  SMSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             SA   +  +     Y+              D    +     +            +   
Sbjct: 417 HKSANNLVTIINDILDYSKVEAGKLTLVEEEFDLRSLVESCTALCAYQADKKNLKLLVDM 476

Query: 106 GEKID-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              ++           +ILLNL   A       G V + V++S++   FS+   G     
Sbjct: 477 PLAMNTVVVGDKGRINQILLNLIGNAVKFTDE-GHVLLKVRESEHGFDFSVSDTGIGIPE 535

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +              +   +       L       L            S  L+
Sbjct: 536 DRLTHIMDKFEQVDTSATRRHEGTGLGLAISKRLISMYNGELCVHSDFGKGSCFSFSLQ 594


>gi|291548796|emb|CBL25058.1| Signal transduction histidine kinase [Ruminococcus torques L2-14]
          Length = 450

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + + F+           S + H++ +PI  + +  E L        ++      +++ 
Sbjct: 219 MFERLEFSFEKER---QFTSDVSHELRTPIAVVISQCEYLLENENLSAEDKEEIAVILRQ 275

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVD------SLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +  S      L   R        ++          + +  Q       ++  +Q     
Sbjct: 276 AKRMSKLTSEMLMIARNEQDEQHLMEKLDFGLLSELVIEELQTKAQEKNIEITLQKQDNL 335

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++++NL   A       G + + ++   ++ +  +K +G           
Sbjct: 336 FMNGDQTLLLRMMMNLITNAINYGKTNGHIHVILKVENDQIVGEVKDDGIGISEEHLDKI 395

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +    +   + +     +    V  + + +   +  E I+D          K
Sbjct: 396 WERFYRIDKSRSRENGGTGLGLSMVRWIVNLHNGTIHVESIEDIGTSFIFRFPK 449


>gi|229101701|ref|ZP_04232418.1| hypothetical protein bcere0019_8680 [Bacillus cereus Rock3-28]
 gi|228681649|gb|EEL35809.1| hypothetical protein bcere0019_8680 [Bacillus cereus Rock3-28]
          Length = 436

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 65/236 (27%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
           M + +  +  S        S   H++ +P   I +  E  L +     E+ + + +    
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQKHNPKEMEESLEVILRQ 255

Query: 60  AIIRL---------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +                   K     F      +    + +   ++    ++D    +  
Sbjct: 256 SRKMSSLISQLLLLARVDQGKHDTFQFECINMSELTEIVVEELSLMVQEASIDITTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                       ++L+NL   A A     G V I +       I  +  NG         
Sbjct: 316 DLFMKADQTLMMRLLMNLLTNAIAYGKENGSVNIQLCRDGTNIIGKVSDNGIGISEQHIT 375

Query: 162 ---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWERFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESKLGEGSTFTFKLP 431


>gi|269128962|ref|YP_003302332.1| multi-sensor hybrid histidine kinase [Thermomonospora curvata DSM
           43183]
 gi|268313920|gb|ACZ00295.1| multi-sensor hybrid histidine kinase [Thermomonospora curvata DSM
           43183]
          Length = 1248

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 57/237 (24%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLE----LLDEVGIE---------D 47
            +     L+ +D    +  S I H+  +P+  I   +E     L +              
Sbjct: 324 QRRRAEELAELDRAKTVFLSDISHEFRTPLTLIMGPVEELRARLQDAEPWVRKDLEVIHR 383

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVS 103
             ++L +L                      D  +   D+  ++   I             
Sbjct: 384 NGLRLSKLVDTLLDYARIEAGRMEARYQPTDLAVFTADLAGMLRTAIERAGLRLEVDCPP 443

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--- 160
                        K++L+L   A      G        +        +   G        
Sbjct: 444 LPEPVYVDRSMWEKVVLSLLSNALKFTFEGSIAVRLRAEDGQAV-LQVSDTGVGVSQKDL 502

Query: 161 ---PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E+F +I       +I+   +    V  L   +   +  +         +  L 
Sbjct: 503 PRLFERFQRIEAPR-TRSIEGDGVALALVRELVRLHGGTITADSTPGKGTTFTVRLP 558


>gi|168183918|ref|ZP_02618582.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237795805|ref|YP_002863357.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672929|gb|EDT84890.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229260846|gb|ACQ51879.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 303

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S I HDI +P+ A+   ++LL +  I  E  +            LK +   F     +
Sbjct: 82  MISNISHDIRTPLTALMGYVDLLSDNSITKEKKEEYISIIRERGTALKDLMEEFFQMAKL 141

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLN 121
           +       IE+     +     +                        +      ++I+ N
Sbjct: 142 ECNDVEITIEKFNISEVVRKNIITFMNEINERTITPEIDIGDEEIFALGDKNYTSRIITN 201

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   +      G  + I +++       S+   G      E    F ++  G        
Sbjct: 202 LISNSLKYGYEGNVIGIDLKEDNKWVTLSIWDKGKGIDKNELPYIFDRLYTGEKSRNRSF 261

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +A      +  + I     + +  + K
Sbjct: 262 QGSGLGLSIVKNMAQHMNGSITAQSIPYEKTIFTVKIPK 300


>gi|218778006|ref|YP_002429324.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759390|gb|ACL01856.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 949

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 52/241 (21%), Gaps = 28/241 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +        M+ +  L   I H+  + +  I    EL    +       E +Q +  +S 
Sbjct: 565 ETKLRQAQKMEAIGTLAGGIAHNFNNLLNIIMGFTELTMSDMRPKTRSRENLQQVLNASH 624

Query: 59  SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A   +     F R        ++      D  ++++  +     V      E   +   
Sbjct: 625 RAKDLVSQILTFSRQDSMEKSPINLGALAADAVRLLQATLPATVVVNSKIPPEPCPIKGN 684

Query: 115 RAKILLNLFM---VAHASLPR----------------GGKVTISVQDSKNENIFSLKING 155
             +I   +      A  ++                        +           +   G
Sbjct: 685 DTQIKQLIMNLGTNAVQAMNGKGGALSLLLDNVEAEAWELEMEAPGLLIPAIRLMVTDTG 744

Query: 156 NLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                     +    V  +   +   +            + L  
Sbjct: 745 RGMDAKTLAQIFDPYFTTLEPGQGTGLGLSVVHGIVKAHGGSISVRSTPGKGTSFTVLFP 804

Query: 215 K 215
           +
Sbjct: 805 R 805


>gi|153812172|ref|ZP_01964840.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174]
 gi|149831827|gb|EDM86913.1| hypothetical protein RUMOBE_02569 [Ruminococcus obeum ATCC 29174]
          Length = 971

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 56/247 (22%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           +   +   L   +  +       + + HDI +P+ AI    +L+++   E ++ ++    
Sbjct: 555 LNDKLEIALKKAEDASFAKTRFLNNMSHDIRTPMNAILGYAQLMEDELKEKDLPEISEYL 614

Query: 57  SMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------AVDKRVQ 101
                            + +A   +G ++     G IE + +             +  + 
Sbjct: 615 KKLQQSGNLLLSIINNVLDMARIESGRMEIDENYGMIEDIWQTLFEIFDDEAKKKNIALH 674

Query: 102 VSWTGEKIDLSRERAKILLNLFM---VAHASL------PRGGKVTISVQDSKNENIFSLK 152
            +   E   +  +  K+                                         + 
Sbjct: 675 YTINVEHEHILTDVTKVKEIFVNILSNTMKYTPSGGSVMINIDELPCSGPGYMIVRTRVS 734

Query: 153 INGNLARFPE---KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G           F         +        +    V          +  E       
Sbjct: 735 DTGIGMSQEYLTNIFEAFTRERNTTKSKIAGTGLGMSIVKKYVELLGGTIDVESELGKGS 794

Query: 208 VLSALLE 214
             +  L+
Sbjct: 795 TFTVTLK 801


>gi|75812816|ref|YP_320433.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75705572|gb|ABA25244.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 720

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 63/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++     ++  +     + + H++ SP+  I     LL +  + +  ++    +    
Sbjct: 340 LRQSREEAQAANRVKDEFLAVLSHELRSPLNPILGWSSLLLKRKLSEAKIEEGLATIHRN 399

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-------- 112
                 +         +       +   V      +     V    +   ++        
Sbjct: 400 AQLQSELIEDLLDVSRILRGKLNLNCSPVDLTATIMGAMETVQLAAQAKSITLQAALEPN 459

Query: 113 --------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       +++ NL   A    P GG+V I ++   N    ++   G         
Sbjct: 460 IGQVRGDATRLQQVIWNLLSNAVKFTPPGGQVNIHLEQLGNVVQITVSDTGKGIAPDFLA 519

Query: 164 ----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
               + +  DG++        +       L   +   +  +    D        L 
Sbjct: 520 YIFDYFRQEDGSITRKFGGLGLGLAIARHLVELHSGTIEAQSPGVDQGATFIIRLP 575


>gi|148549526|ref|YP_001269628.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
 gi|148513584|gb|ABQ80444.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida F1]
          Length = 585

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + S  L AL  + + + H+I  P+      LE L             + ++ 
Sbjct: 347 LRTAQEGLVQSAKLAALGQMSAAMAHEINQPLTTQRMQLETLRLLLDHGRHDEARQALEP 406

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104
           +             ++     +       +D    +     +         V+  + ++ 
Sbjct: 407 LEQMLTRMAALTSHLKTFARNSPMGLRERLDLATVVDQALHLLEARLRNEDVEVALYLAR 466

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPE 162
                  +    ++L+NL   A  ++         I ++        S+  +G      +
Sbjct: 467 PAWVRGDAIRLEQVLINLLHNALDAMLDKRYKRLEIRIEPDGELWRLSVLDSGGGIAEAD 526

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++ D    +    +   +       + HE   +L  E +      LS  L +
Sbjct: 527 L-AKVFDPFFTTKPVGEGLGLGLAISYGIVHEAGGQLRAENLPG-GARLSLTLPR 579


>gi|325916932|ref|ZP_08179177.1| histidine kinase [Xanthomonas vesicatoria ATCC 35937]
 gi|325536878|gb|EGD08629.1| histidine kinase [Xanthomonas vesicatoria ATCC 35937]
          Length = 650

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 67/229 (29%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS--- 56
           AK       S  + A+  L + + H++ +P+  I ++L+ ++             L    
Sbjct: 403 AKLQAELRRSEAMAAIGALMAGVAHEVRNPLFGISSTLDAMEAGSNHVGGRHREVLRREV 462

Query: 57  ---SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKI 109
              +      L++ R       S      + +   +        +   V    +  G   
Sbjct: 463 RRLNKLMTDLLEYGRPPTDTFASGRLGTVIAEASHICGATADAAEVAIVNQVDTCDGAMQ 522

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFT 165
                  ++ +NL   A    P G +VTIS    ++         ++  G      +   
Sbjct: 523 MNHGRMLQVFVNLIENAVQHAPAGSEVTISASMIEDNGQRLVECCVQDRGAGFATDDLPF 582

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D           +    V  +  ++K  +          V+   L 
Sbjct: 583 -LFDPFFTRRRKGTGLGLAIVQRIVEQHKGTIAAHNSAQGGAVMVLRLP 630


>gi|324325943|gb|ADY21203.1| sensor histidine kinase, putative [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 355

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 113 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHANGEECEQYVS 172

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++ ++E  +           +   +
Sbjct: 173 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSFCI 232

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I V          +K  G     
Sbjct: 233 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKEIVIQVSKRDMNVEIEIKNFGQCIPD 292

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     +    V +  L 
Sbjct: 293 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAEFHKGDITVRSNEKE-TVFTIALP 350


>gi|320160794|ref|YP_004174018.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994647|dbj|BAJ63418.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 414

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 64/234 (27%), Gaps = 28/234 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRL 55
           A++    +          S I H++ +P+G I      L       +  ++ E +++I  
Sbjct: 172 AQSKESRVQED-----FISTITHELRTPLGFIKGYTTTLLRSDTEWDPQMQQEFLKIIDQ 226

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            +      ++ +           ++ F        +    +  ++               
Sbjct: 227 ETDRLQELIENLLDSARLQSGTLKMIFQPVRLDSLVRSTIEHLRMHHPTFTAHLETDTPL 286

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
           +  + D      ++L NLF  A    P         +        +++ +G        P
Sbjct: 287 SPIEADPK-RINQVLENLFHNAIKYAPGSDVWVKIKEQDGE-ITLTIEDHGPGIPQRYLP 344

Query: 162 EKFTQIV-DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   + +    I    +  +    +   +   +    I          L 
Sbjct: 345 FVFERFFRNPDASPNIHGTGLGLFICKKIIQAHHGNIQVNSIQGKGTTFIIRLP 398


>gi|315222866|ref|ZP_07864750.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Streptococcus anginosus F0211]
 gi|315188060|gb|EFU21791.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Streptococcus anginosus F0211]
          Length = 343

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 72/236 (30%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +         S     L+ +++ HDI +P+ +I  ++E + +       +   ++ I   
Sbjct: 106 LQDTFASLEESEKEKGLMIAQLSHDIKTPLTSIQATVEGMLDGVIAADEQQYYLKTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------- 106
           +      ++ +      T          +   + +  I +    Q+              
Sbjct: 166 TDRLNKLVEELSFITLNTMHEPDTPIEKEEIFLDKLLIDIMSEFQLVIDREGRDIRISVQ 225

Query: 107 ----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               + I    + ++I+LNL   A      G K+TI         I ++   G   +  +
Sbjct: 226 PESAKIISNYDKLSRIILNLVSNAFKYSEAGTKLTIDAVVENKRLILTVADEGQGIKSED 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +  Y    LA +    +  +         S +L
Sbjct: 286 LDKIFKRLYRVESSRNMKTGGHGLGLYIARELARQLGGDIFVQSEYGQGSSFSLVL 341


>gi|298244704|ref|ZP_06968510.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297552185|gb|EFH86050.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 552

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 70/242 (28%), Gaps = 30/242 (12%)

Query: 3   KNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQL 52
           +     +     +  L A L S + HD+ +P+  I  S   L E  I  E      + + 
Sbjct: 305 QRENLRIEVLQQTDALRAALLSSVSHDLRTPLTVIKASASTLLEQDIHWEEAVQHSIARS 364

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIED-------FIAVDKRVQVSWT 105
           I   +      +  +                    + +          +   + +Q+   
Sbjct: 365 IEREADRLNRLVGNLLDMSRIEEGALKPEKEWYQVRALIQDVLDRLSSLFEGRSIQLHGP 424

Query: 106 GEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            +   +  +     ++L NL   A    P G  + +++Q  ++E + S+   G      E
Sbjct: 425 RDLPPVELDYLYLDQVLTNLLENAVRYTPPGTPIDVTIQPQEHEMLISVADRGPGIPQAE 484

Query: 163 KF----------TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +                G   ++     +       L   ++ R+  E        L   
Sbjct: 485 QKLVFDKFYRVLHHKQPGTSNTSTPGSGLGLAVCKGLIEAHEGRIWVESRPQGGAQLFIA 544

Query: 213 LE 214
           L 
Sbjct: 545 LP 546


>gi|295086868|emb|CBK68391.1| Signal transduction histidine kinase [Bacteroides xylanisolvens
           XB1A]
          Length = 772

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 52/231 (22%), Gaps = 21/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLS 56
           MAK     ++S          I H++ +P+ AI     L+ +    D     +  +   S
Sbjct: 289 MAKRNEALIASRKKA---VHTITHELRTPLTAITGYAGLMRKDCNTDKTGTYIRNIQESS 345

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTG 106
                +    +       G          I  +          +                
Sbjct: 346 DRMREMLNTLLNFFRLDNGKEQPNFSACRISAITHTLETEFMPIAINKGLTLTIHCHKDA 405

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT- 165
                     +I  NL   A      G     +  D+       ++  G      E+   
Sbjct: 406 FVCTDKERILQIGNNLLSNAIKFTENGSVSLRADYDNGL-LKLIVEDTGTGMTEEEQQRV 464

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  +  D   +    V  +       +  E         +  + 
Sbjct: 465 FGAFERLSNAAAKDGFGLGLSIVQRIVTMLGGTIRLESDKGKGSRFTVEIP 515


>gi|224370281|ref|YP_002604445.1| predicted fusion protein, sensory box response regulator
           (N-terminal) / CheY-like response regulator receiver
           (C-terminal) [Desulfobacterium autotrophicum HRM2]
 gi|223692998|gb|ACN16281.1| predicted fusion protein, sensory box response regulator
           (N-terminal) / CheY-like response regulator receiver
           (C-terminal) [Desulfobacterium autotrophicum HRM2]
          Length = 667

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 20/241 (8%), Positives = 64/241 (26%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIR 54
           +N       M+ +  L   I HD+ + +  +    ++L              +++ +   
Sbjct: 281 ENQLRKAQKMEAIGTLSGGIAHDLNNILSPVLGYADMLMNDAKPGGITFARSEKIHRAAL 340

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            ++      L F R        V       ++ ++++  I    ++      +   +  +
Sbjct: 341 RAADLVNQILTFTRRKEEKKRPVKIHPIAMEVLRLLKGSIPSTIQIIDRIDRKCGRIEAD 400

Query: 115 ---RAKILLNLFMVAHASLPR----------------GGKVTISVQDSKNENIFSLKING 155
                ++++NL   A+ ++                     +              +   G
Sbjct: 401 LTQIHQVIMNLCTNAYHAMEDAGGELVVALFEKTLGEKEAMAHQGLTPGRFLCLEVSDTG 460

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I +    +  +     +    V  +       +L   +       + L 
Sbjct: 461 CGIPESFL-ERIFEPYYTTKEEGKGTGLGLATVYGIVKSYHGEVLVRSVPGKGSCFTILF 519

Query: 214 E 214
            
Sbjct: 520 P 520


>gi|167032264|ref|YP_001667495.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
 gi|166858752|gb|ABY97159.1| multi-sensor hybrid histidine kinase [Pseudomonas putida GB-1]
          Length = 917

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 274 MARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLSTIEKSA 331

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      +    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDT 391

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
               I       +IL NL   A      G  V  ++     +   +   S++  G     
Sbjct: 392 PSSLIGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLDDEHEDHAQLRISVQDTGIGLSP 451

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +  T     +              +       L  +    +  +           S  L
Sbjct: 452 QDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNL 511

Query: 214 EK 215
            K
Sbjct: 512 PK 513


>gi|170021228|ref|YP_001726182.1| phosphate regulon sensor protein [Escherichia coli ATCC 8739]
 gi|169756156|gb|ACA78855.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli ATCC 8739]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|84684419|ref|ZP_01012320.1| C4-dicarboxylate transport sensor protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667398|gb|EAQ13867.1| C4-dicarboxylate transport sensor protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 576

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 69/235 (29%), Gaps = 25/235 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +     + +  L AL  + + I H++  P+ AI +  E  ++     +          
Sbjct: 336 LKRAQDELVQAGKLSALGKMSAGISHELNQPLMAIRSFAENGEQFFDRGKPERARDNLGK 395

Query: 51  --QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSW 104
             +L R           F R   G    VD +  +    ++  D I   +      +   
Sbjct: 396 ISELARRMGRIIQNLRAFARQESGPVTDVDLVDVIDASLEMTADKIHRHEVELVYDRPHL 455

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPE 162
                       ++++NL   A  ++    +  +  ++         +++ +G     P+
Sbjct: 456 PIMVRGGEVRLQQVVVNLVSNAVDAMSDAPERRLSLTLDTDGPAVRLTVRDSGPGIADPD 515

Query: 163 KFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              ++ D    +      +   +       L       +      +     +  L
Sbjct: 516 ---RVFDPFYSTKEVGAAEGMGLGLSISYGLVQSFGGAIKGLNHPEGGAAFTVEL 567


>gi|285017464|ref|YP_003375175.1| two-component system sensor protein pils [Xanthomonas albilineans
           GPE PC73]
 gi|283472682|emb|CBA15187.1| probable two-component system sensor protein pils [Xanthomonas
           albilineans]
          Length = 537

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI+ + +LL+E       +  ++Q+I        
Sbjct: 307 RAESLTLSAMGRFSASLAHEIRNPLAAINYASQLLEESTAIDNADRRLLQIIHQQCQRTN 366

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDLSR 113
             ++ +        S    + LG   +           ++               +   +
Sbjct: 367 GIVESVLGLARRERSNPENLDLGAFSRRFVLDCQQGLSIETDSIEAILPQHPVHALVDPK 426

Query: 114 ERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +IL  L   A      +    +V + V   +   I  +   G          Q+   
Sbjct: 427 HLHQILSALVHNALKYGRVMEEPARVRLRVCMQERNAIVDVMDRGPGIPET-VAAQLFRP 485

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ RL    +          L 
Sbjct: 486 FFTTSEHGTGLGLYIARELCRANQARLEYVPVPAGGACFRVTLP 529


>gi|209744224|gb|ACI70419.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|209744230|gb|ACI70422.1| positive and negative sensor protein for pho regulon PhoR
           [Escherichia coli]
 gi|320643768|gb|EFX12891.1| phosphate regulon sensor protein [Escherichia coli O157:H- str.
           493-89]
 gi|320649119|gb|EFX17697.1| phosphate regulon sensor protein [Escherichia coli O157:H- str. H
           2687]
 gi|320656012|gb|EFX23928.1| phosphate regulon sensor protein [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320662569|gb|EFX29958.1| phosphate regulon sensor protein [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665139|gb|EFX32232.1| phosphate regulon sensor protein [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|170741231|ref|YP_001769886.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195505|gb|ACA17452.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 873

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 64/222 (28%), Gaps = 29/222 (13%)

Query: 20  SRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMSAIIRLKF----MRLAFGYT 74
           + + H+I +P+ A+    +LL     +E E  +L+     +           +  +    
Sbjct: 498 ATMSHEIRTPLTAVLGYADLLMARSDLEAEQARLVGRIVTAGEALRTIVDDVLDFSRIEA 557

Query: 75  GSVDSLIGLGDIEQVIEDFI------------AVDKRVQVSWTGEKIDLSRERAKILLNL 122
           G VD       +  +IE+ +             +   ++       +       +ILLNL
Sbjct: 558 GRVDLAPRPFSLADLIEEALALVRPEADRKGLPIAVAIEPGLPPRLVGDVDRLRQILLNL 617

Query: 123 FMVAHASLPRGGK-----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------ 171
              A    P G          +        + S++  G      +K  ++ +        
Sbjct: 618 LNNAVKFTPAGSIGLAVARDPTGPAEGRGLLISVRDTGIGI-PADKHARLFERFSQVDGS 676

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           ++       +       L      R+  E  +         L
Sbjct: 677 IQRQYGGTGLGLAISRRLVEAMHGRIGVESREGEGSTFWFRL 718


>gi|168182121|ref|ZP_02616785.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237793586|ref|YP_002861138.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182674602|gb|EDT86563.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229263524|gb|ACQ54557.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 465

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 62/235 (26%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNL----SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K+I            +   L   I H++ +PI  +   LE + +       E ++ I 
Sbjct: 225 LIKSINMMAGDLDKQEKIRQELTKDISHELRTPITTMQAQLEAIMDGLWEPSQERLKSIY 284

Query: 55  LSSMSAIIR---LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------ 105
                       ++ +    G    ++      +            + +           
Sbjct: 285 DELQRLNRLTVSIEDLSRCEGNKIRLNKSEVDLENVITTILTNFEKQLLDKDINLQVNLK 344

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
               +    + +++++N+   A    P  G++ +      +    S+K +G      +  
Sbjct: 345 PINIMIDKDKISQVIINIISNAIKYTPDKGEIFVRCFTKSDNVYISIKDSGIGISDEDKD 404

Query: 163 -KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +           I       +   +   +      D        L 
Sbjct: 405 YIFERFYRTDKSRARETGGVGIGLTISREIVKAHGGSINVYSKLDEGSNFVIKLP 459


>gi|124266570|ref|YP_001020574.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
 gi|124259345|gb|ABM94339.1| Cache sensor hybrid histidine kinase [Methylibium petroleiphilum
           PM1]
          Length = 731

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 56/236 (23%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
           + +     + + D  +L  + I H+I +P+  +    ++   +  +  E  Q       S
Sbjct: 326 LQEAKEQAVRANDSKSLFLANISHEIRTPLNGVLGFAQIGYRDPSVVPEARQKFARILES 385

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVS 103
             +    +      +      + L     ++   +                     V   
Sbjct: 386 GKLLQGILNDVLDMSKIEAGKLLLDPTPTMLRPALERAVDLVRGFARDKGIALCLMVDRR 445

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +       +ILLNL   A      G                +++ +G      + 
Sbjct: 446 VPEVIVVDPLRLGQILLNLLSNAVKFTASGQVDVTVGVSGDKLV-INVRDSGLGMSEEQI 504

Query: 164 FTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +     D +         +       L       ++           S  L 
Sbjct: 505 SRLFMAFEQADRSTTRRYGGTGLGLAITKRLVEMMNGSIVVTSHLGAGSTFSIRLP 560


>gi|74310969|ref|YP_309388.1| phosphate regulon sensor protein [Shigella sonnei Ss046]
 gi|73854446|gb|AAZ87153.1| positive and negative sensor protein for pho regulon [Shigella
           sonnei Ss046]
 gi|323164190|gb|EFZ49997.1| phosphate regulon sensor kinase PhoR [Shigella sonnei 53G]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|262403573|ref|ZP_06080131.1| osmosensitive K(+) channel histidine kinase kdpD [Vibrio sp. RC586]
 gi|297580324|ref|ZP_06942251.1| sensor histidine kinase [Vibrio cholerae RC385]
 gi|262350077|gb|EEY99212.1| osmosensitive K(+) channel histidine kinase kdpD [Vibrio sp. RC586]
 gi|297535970|gb|EFH74804.1| sensor histidine kinase [Vibrio cholerae RC385]
          Length = 497

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLA---- 70
           L + + HD+ +P+GAI  S   L +  +    +   +L+   +       + +       
Sbjct: 273 LLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLTSIAEQGERLNRSLTKLLDIT 332

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        V+    +G +   +   +   K    S        S    ++L+NL 
Sbjct: 333 RYTATALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIESQPMLVELDSLLIEQVLINLV 392

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHD 180
             A    PRG ++ I+      +   ++  NG      E   +I D       +  D   
Sbjct: 393 ENAVKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PNEALPRIFDRFYRVEGNHADGTG 451

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      ++   ++  +     +      +  + 
Sbjct: 452 LGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|331004935|ref|ZP_08328348.1| Two-component sensor PilS [gamma proteobacterium IMCC1989]
 gi|330421259|gb|EGG95512.1| Two-component sensor PilS [gamma proteobacterium IMCC1989]
          Length = 531

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRL 55
            K I      + L +L  L S I H+I +P+GAI ++ +LLDE       + E++++I++
Sbjct: 293 EKRINQEAQQIKLASLGRLTSSIAHEIRNPLGAISHASQLLDESEYIHRSDQELLRMIQV 352

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS--- 112
           +S      +  +        S   +I L +               Q+  +  K  +    
Sbjct: 353 NSQRIDQTINNILQFSRRKQSSPEMINLCEWVSTFCSNYQSQHTSQIICSMSKDHIYGRI 412

Query: 113 --RERAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 +I+ NL                  + + + +        +   G+  +  +   
Sbjct: 413 DPNHLQQIITNLVDNGIRHGKKQNTKGVIYINVGINEHSKLPYIDVLDEGDGIKDTDLNQ 472

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSAL 212
            I +    +      +  Y    L   NK  +L  +  D         
Sbjct: 473 -IFEPFFTTKTSGSGLGLYLCKELCEANKADILYLQKTDTQKSCFRLT 519


>gi|323972050|gb|EGB67266.1| hsp90-like protein [Escherichia coli TA007]
          Length = 628

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 383 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 441

Query: 54  RLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 442 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 501

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 502 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 561

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 562 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 614


>gi|322830983|ref|YP_004211010.1| integral membrane sensor signal transduction histidine kinase
           [Rahnella sp. Y9602]
 gi|321166184|gb|ADW71883.1| integral membrane sensor signal transduction histidine kinase
           [Rahnella sp. Y9602]
          Length = 453

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 64/223 (28%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 217 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSDDDSYLAESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +                     
Sbjct: 277 CNAIIEQFIDYLRTGQEMPTEITDLNGILGEVIATESGYEREIDSGLADGELLVNAHPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGN 171
             + ++N+ + A        KV+   +       F ++ +G           F   V G 
Sbjct: 337 IKRAVVNMVVNAARYGDGWIKVSSGRELQ--RAWFQVEDDGPGIEPDQLKHLFQPFVRGE 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              T     +    V  +   +   L     D   + + A L 
Sbjct: 395 SARTTSGTGLGLAIVQRIIDAHSGTLDIGKSDRGGLRIRAYLP 437


>gi|306813134|ref|ZP_07447327.1| phosphate regulon sensor protein [Escherichia coli NC101]
 gi|305853897|gb|EFM54336.1| phosphate regulon sensor protein [Escherichia coli NC101]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVHN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|213968479|ref|ZP_03396622.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1]
 gi|301384948|ref|ZP_07233366.1| sensor histidine kinase [Pseudomonas syringae pv. tomato Max13]
 gi|302062024|ref|ZP_07253565.1| sensor histidine kinase [Pseudomonas syringae pv. tomato K40]
 gi|302134335|ref|ZP_07260325.1| sensor histidine kinase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213926767|gb|EEB60319.1| sensor histidine kinase [Pseudomonas syringae pv. tomato T1]
          Length = 355

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIH---------NSLELLDEVGIEDEVMQL 52
           A++    ++ ++ +  L + I H++  P+ AI           + E ++       V ++
Sbjct: 117 ARSQLAQIARVNQLGELAASIAHEVNQPLSAIVISGNACQRWLAAEPVNLEKARQAVERM 176

Query: 53  IRLSSM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105
           I  ++             K       +    D++  +  +     D   V   V+V    
Sbjct: 177 IGDANRAGDIIVRVRALAKRSSTYKEWISVADTVAEIVALAHSEIDAQGVALTVEVPEGL 236

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARF 160
              +    +  ++LLNL +    ++ +                  +  F+++ NG     
Sbjct: 237 PPLLADRVQIQQVLLNLMLNGVDAMSKVETDQAQLEIRVDWREGGDIGFAVRDNGIGV-Q 295

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ D    +  +   I       +   +  R+               L 
Sbjct: 296 ADNTDRLFDAFYTTKQEGMGIGLAISRSIIEAHGGRIWVTPNPSIGATFHFTLP 349


>gi|197336880|ref|YP_002157952.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
 gi|197314132|gb|ACH63581.1| sensory transduction protein kinase [Vibrio fischeri MJ11]
          Length = 864

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 61/244 (25%), Gaps = 33/244 (13%)

Query: 2   AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            +     +      AL        + + H+I +P+  I    ++L E  +     + +  
Sbjct: 334 QETEYLEIEKSKAEALAKAKSSFLANMSHEIRTPLNGIIGMSDILTETDLTPVQSEYVET 393

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------- 102
              S+   L  +      +      + +   E  +E+       V +             
Sbjct: 394 IDTSSQTLLLLINDILDLSKIESGNLVIVPQESNVEEVAYDTLTVILSKATEKGLALQID 453

Query: 103 ---SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKING 155
                    +       +IL+NL   A      G  +       K        FS+K  G
Sbjct: 454 LANDLPELVMLDEHRLRQILMNLMSNAVKFTQDGAVILSINYQQKENGRGLLFFSVKDTG 513

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +K  QI +        +        +       L       L  +         
Sbjct: 514 IGI-SKDKCEQIFEPFTQEDSSITRQFGGTGLGLAICRQLVEMLGGELKVDSEKGFGSKF 572

Query: 210 SALL 213
             +L
Sbjct: 573 HFIL 576


>gi|251795714|ref|YP_003010445.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247543340|gb|ACT00359.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 491

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 66/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
           M  +I       +    L + I HD+ +P+ AI   ++ +++ V    E       +  +
Sbjct: 245 MQDSIRIQAQYEENRKELIASISHDLRTPLTAIRGYIDGVMEGVADTPEKSARYMKTIDA 304

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIE-----------------QVIEDFIAVDKRVQV 102
               L+ +         +D        E                 ++ +  IA +  + V
Sbjct: 305 KAAELEHLINELFLYSKLDLNRQPFLFEAVELLPFLNDLSEELQFELEKKSIAFEPDIHV 364

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFP 161
                      +  ++L N+   +   + +   V         N+ +  +  NG   +  
Sbjct: 365 PAGSFVRMDRDQFKRVLNNIISNSVRYMDKPLPVIRIKAYLEGNQAVMKISDNGIGMKDK 424

Query: 162 EK---FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +    +           +       +   +   +           +S  L 
Sbjct: 425 DLEHMFERFYRADESRSVKTGGSGLGLAIAKQIMESHNGEITAASKWTAGTTISLYLP 482


>gi|160942545|ref|ZP_02089793.1| hypothetical protein FAEPRAM212_00021 [Faecalibacterium prausnitzii
           M21/2]
 gi|158446161|gb|EDP23164.1| hypothetical protein FAEPRAM212_00021 [Faecalibacterium prausnitzii
           M21/2]
          Length = 347

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 59/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  +  + +     +       +      +   
Sbjct: 128 FVSDVSHEFKTPINAIEGYTMLLQGEELSPDQEEYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +   E             +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAVLSLETKWTEKEIGFQVELEEVKYTANEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELP 340


>gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
 gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
          Length = 1441

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---- 70
             S + H++ +P+  I    + L       I D+ ++ I     S    L  +       
Sbjct: 320 FMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLINDILDAA 379

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        V+    + D+  + +       ++          +  +  +I+    
Sbjct: 380 SMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKRGVKLVNDLRENVPFVLGDTGRIIQVFH 439

Query: 124 M---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVEST 175
                +       G ++IS     +E   ++   G      +          VD +V   
Sbjct: 440 NLIGNSCKFT-HSGNISISAAVKDDEVEVAVADTGIGIPEDKFDQIFLAFEQVDMSVTRK 498

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  L   +  R+  +  ++        L+
Sbjct: 499 YGGTGLGLNLVKQLVEAHGGRISVKSRENQGTTFYFTLK 537


>gi|115375537|ref|ZP_01462796.1| SocD [Stigmatella aurantiaca DW4/3-1]
 gi|115367492|gb|EAU66468.1| SocD [Stigmatella aurantiaca DW4/3-1]
          Length = 546

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 63/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL----------LCSRICHDIISPIGAIHNSLELLDEVGIE---- 46
           + +     + +  L             L + + HD+ +P+G +     LL          
Sbjct: 290 LCQRASLAIDNARLFGESRRATRAREDLLAVVSHDLKNPLGVVQLGAALLLRERPNVPRD 349

Query: 47  ---DEVMQLIRLSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIA 95
               +    IR +S  A+  +  +              T  VD+   + +    I     
Sbjct: 350 EHVHKHATRIRDASDRALRLISDLLDWGRLEEGRLPLETREVDASALVLEAVDSIRPLAE 409

Query: 96  VDKRVQV----SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
                 V          +       ++L NL   A      GG+VT+  +   +E    +
Sbjct: 410 AHGLQVVVELPEGLPRVVCDRGRVLQVLGNLLGNAVKFTDPGGRVTVGARTQGDEARLYV 469

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           +  G      +                    +       L   +  R+  +         
Sbjct: 470 RDTGKGIPPEQLSYVFDRYWQAKDSVSRGTGLGLAIAKGLVEAHGGRIEAQSTLGEGSTF 529

Query: 210 SALL 213
           S  L
Sbjct: 530 SFTL 533


>gi|110668083|ref|YP_657894.1| signal-transducing histidine kinase/response regulator
           [Haloquadratum walsbyi DSM 16790]
 gi|109625830|emb|CAJ52268.1| signal-transducing histidine kinase; response regulator; PAS/PAC
           domain protein [Haloquadratum walsbyi DSM 16790]
          Length = 888

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 63/228 (27%), Gaps = 21/228 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + +      +D      S + HD+ +P+     +LELL E    D+  + +     +  
Sbjct: 645 RRELHRQNKQLD---EFASVVSHDLRNPLTVAKGNLELLREECNSDDQREQVDKIDSALT 701

Query: 62  IRLK------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----L 111
              +       +  A    GSV+S+      +   ++    D  + +  T  +       
Sbjct: 702 RMDELIESILTLARANEQIGSVESVNLAELSQNCWQNVETTDATIHLDITATQTVTVKAD 761

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI-------FSLKINGNLARFPEKF 164
               A++L NL   A              ++             F +  +G+     ++ 
Sbjct: 762 VNRLAQLLENLMRNAIEHARNQDDDDDVDKNENVTITIGELTDGFYIADDGDGISESDRD 821

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                G   S           V  +   +   +      D        
Sbjct: 822 DVFEAGYTTSKH-GTGFGLSIVKQVVEAHGWEISITESADGGARFEVT 868


>gi|94265894|ref|ZP_01289622.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93453553|gb|EAT03955.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 634

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 71/240 (29%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +        M+ V  L   I HD  + + AI    ++    L       + ++ I  ++ 
Sbjct: 251 EEQLRQAQKMESVGTLAGGIAHDFNNLLTAIIGYTQICLMGLGPDEPRRQNLEQILQAAR 310

Query: 59  SAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                 +    F R        V+    +  +E+ +   I  D    +  + +++ L  +
Sbjct: 311 RGAYLTRGLLLFSRKQESDRQPVELNGIVRQVEKFLRRVIGEDIEAGIELSAQELPLLAD 370

Query: 115 RAKILLNLFM---VAHASLPRGGKVTISVQ---------------DSKNENIFSLKINGN 156
             ++   L      A  ++P GG++ IS                       + ++  +G 
Sbjct: 371 AHQLEQVLMNLATNARDAMPGGGQLRISTHRVDLDGEFISDHGSGHPGPHALLTVSDSGQ 430

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   ++ +    +        +    V  +  +++  +               L 
Sbjct: 431 GM-DGQTRQRVFEPFFTTKGVGRGTGLGLAVVYGIVQQHEGFITVYSEPARGTTFRIYLP 489


>gi|21674513|ref|NP_662578.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
 gi|21647705|gb|AAM72920.1| sensor histidine kinase/response regulator [Chlorobium tepidum TLS]
          Length = 545

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 63/232 (27%), Gaps = 30/232 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII-------R 63
           M+LV  L S I HD  + + AI  + EL L ++   +  +  I      A          
Sbjct: 167 MELVGQLASGIAHDFNNALAAIIGNTELALKKLDPANPAVSNITDIHTLATRSANLTRQL 226

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L F R        ++    + D  ++ +  I  +  ++     E I +  +  ++   L 
Sbjct: 227 LAFARKQMAMPRVLNLTEEVSDCLRLYQRLIDKNIHLEWHLCDEPIQVKLDPTQLEQILS 286

Query: 124 M---VAHASLPRGGK----------------VTISVQDSKNENIFSLKINGNLARFPEKF 164
                A  ++   G                          +    S+  +G         
Sbjct: 287 NLLVNARDAIDGSGCITVRCEGARFEPTDGKTCNPRLSPGDYARLSITDSGCGIEAS-VL 345

Query: 165 TQIVDGNVESTIDSHDIQFYY--VILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +    +      I      V  +  +N   +               L 
Sbjct: 346 PHIYEPFFTTKEIGKGIGLGLSSVYGIVRQNNGHIECHSEPGKGTTFDIWLP 397


>gi|15964755|ref|NP_385108.1| putative sensor histidine kinase protein [Sinorhizobium meliloti
           1021]
 gi|7531256|sp|Q52969|Y1002_RHIME RecName: Full=Uncharacterized sensor-like histidine kinase R01002
 gi|15073933|emb|CAC45574.1| Putative sensor histidine kinase [Sinorhizobium meliloti 1021]
          Length = 525

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 27/223 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            L + + H++ +P+ AI    ++L          D   + + L   S    L  +     
Sbjct: 243 FLAA-VSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLD 301

Query: 73  YTGSVDSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
            +        L                 +         R+    T    +++ +     +
Sbjct: 302 MSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQ 361

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------ 171
           IL+NL   A     RGG VT+      N    ++   G      +K   +          
Sbjct: 362 ILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGI-AADKLQMLGQPFVQIQND 420

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +    V  LA  +   +     +    V+   + 
Sbjct: 421 YTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIP 463


>gi|157156979|ref|YP_001461579.1| phosphate regulon sensor protein [Escherichia coli E24377A]
 gi|157159918|ref|YP_001457236.1| phosphate regulon sensor protein [Escherichia coli HS]
 gi|193065208|ref|ZP_03046281.1| phosphate regulon sensor protein PhoR [Escherichia coli E22]
 gi|194428791|ref|ZP_03061326.1| phosphate regulon sensor protein PhoR [Escherichia coli B171]
 gi|209917611|ref|YP_002291695.1| phosphate regulon sensor protein [Escherichia coli SE11]
 gi|218552962|ref|YP_002385875.1| phosphate regulon sensor protein [Escherichia coli IAI1]
 gi|300818278|ref|ZP_07098489.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 107-1]
 gi|300820363|ref|ZP_07100515.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 119-7]
 gi|300924117|ref|ZP_07140110.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 182-1]
 gi|301330742|ref|ZP_07223343.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 78-1]
 gi|331666747|ref|ZP_08367621.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA271]
 gi|331676065|ref|ZP_08376777.1| phosphate regulon sensor kinase PhoR [Escherichia coli H591]
 gi|157065598|gb|ABV04853.1| phosphate regulon sensor protein PhoR [Escherichia coli HS]
 gi|157079009|gb|ABV18717.1| phosphate regulon sensor protein PhoR [Escherichia coli E24377A]
 gi|192927182|gb|EDV81803.1| phosphate regulon sensor protein PhoR [Escherichia coli E22]
 gi|194413094|gb|EDX29381.1| phosphate regulon sensor protein PhoR [Escherichia coli B171]
 gi|209910870|dbj|BAG75944.1| two-component sensor kinase [Escherichia coli SE11]
 gi|218359730|emb|CAQ97271.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli IAI1]
 gi|300419670|gb|EFK02981.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 182-1]
 gi|300527148|gb|EFK48217.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 119-7]
 gi|300529169|gb|EFK50231.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 107-1]
 gi|300843314|gb|EFK71074.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 78-1]
 gi|320201641|gb|EFW76217.1| phosphate regulon sensor protein [Escherichia coli EC4100B]
 gi|323160494|gb|EFZ46442.1| phosphate regulon sensor kinase PhoR [Escherichia coli E128010]
 gi|323184775|gb|EFZ70146.1| phosphate regulon sensor kinase PhoR [Escherichia coli 1357]
 gi|323945299|gb|EGB41355.1| phosphate regulon sensor kinase PhoR [Escherichia coli H120]
 gi|324016660|gb|EGB85879.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 117-3]
 gi|331065971|gb|EGI37855.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA271]
 gi|331076123|gb|EGI47405.1| phosphate regulon sensor kinase PhoR [Escherichia coli H591]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|320173783|gb|EFW48966.1| phosphate regulon sensor protein [Shigella dysenteriae CDC 74-1112]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|313105812|ref|ZP_07792075.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
 gi|310878577|gb|EFQ37171.1| sensor/response regulator hybrid [Pseudomonas aeruginosa 39016]
          Length = 925

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +       +     SA
Sbjct: 272 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLTTIQKSA 329

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      V    
Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
             +     +   +IL NL   A      G     ++ + ++    +   S++  G     
Sbjct: 390 PIQLQGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDESDDRAQLRISVQDTGIGLSE 449

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            ++       +              +       L  +    +  +           S  L
Sbjct: 450 EDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL 509

Query: 214 EK 215
            K
Sbjct: 510 PK 511


>gi|258515909|ref|YP_003192131.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779614|gb|ACV63508.1| histidine kinase [Desulfotomaculum acetoxidans DSM 771]
          Length = 385

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++        +    L + I HD+ +PI +I   +E + +       ++   L  +  
Sbjct: 145 LEESEKIKSEYEENRKALIANISHDLKTPITSIQGYIEAILDGEGIALEIKNKYLQIIHY 204

Query: 61  IIRL-KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------ 113
            I     +         +D        E+V       D   ++    E+  +        
Sbjct: 205 NIIYVNKLIDDLFLFSKLDLQKLNFQFEKVQVRAFMSDLTEELGLELEERQVQFFYTDKM 264

Query: 114 -----------ERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARF- 160
                         + L N+   A    P  G +  +      +     L  NG      
Sbjct: 265 EQDLPILLDRKRMHQALRNIVGNALKYGPDKGLIIKAELSKQGDLVCIKLIDNGPGIPAD 324

Query: 161 --PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             P  F +    + E T D  S  +       L   +   +     +      +  L 
Sbjct: 325 KLPHIFDRFYRVDKERTKDLMSTGLGLAIARELLQAHGGSIAAFSEEGKGTCFTITLP 382


>gi|242280332|ref|YP_002992461.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
 gi|242123226|gb|ACS80922.1| Hpt sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
           2638]
          Length = 923

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           AK+     S     +   + + H+I +P+ AI    +L  E  +  +  + I++      
Sbjct: 266 AKDEAEAASKSK--SEFMANVSHEIRTPMNAIIGMADLTMETDLSSKQREFIKIIISSGK 323

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------RVQVSWT 105
                    L F ++  G     +    L  +   I D                ++    
Sbjct: 324 VLLRLINDILDFSKIEAGKLSLEEVNFNLHQLIHDISDLFVEQMVASQTELVIDIRPGVP 383

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161
              I       ++L+N+   A     +G  +       +  +K E +F++K  G      
Sbjct: 384 QRIIGDPLRLRQVLVNITANAFKFTSKGEIIITVSADQINATKTEIVFAIKDTGIGIPEE 443

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +          DG+         +       + +     +      +        +
Sbjct: 444 VQPHLFEAFKQADGSTTRKYGGTGLGLSISKRIVNLMGGNIWFRSRPEDGSTFFFTI 500


>gi|219851553|ref|YP_002465985.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
            palustris E1-9c]
 gi|219545812|gb|ACL16262.1| multi-sensor signal transduction histidine kinase [Methanosphaerula
            palustris E1-9c]
          Length = 1267

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 62/231 (26%), Gaps = 21/231 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIR 54
            A N+  +   ++  A + S   HD+  P+  +    ++L+       +   ++ +  ++ 
Sbjct: 1036 ADNLKASNQELEQFAYIAS---HDLKEPLRMVTCFSQILERQYKGQLDADADEFIGYIVD 1092

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE------QVIEDFIAVDKRVQVSWTGEK 108
             +     +    +  +    G                   +I      + R+        
Sbjct: 1093 GALRMEALINDLLLYSRINQGMRPVERVDMKHAIEEAISNLIIPIRERNARITRGAMPSI 1152

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQ 166
                 +  ++  NL   A    P   +  I +    +     FS+K NG           
Sbjct: 1153 QGDLSQMVQLFQNLIGNAMKYCPEEREPEIWINAERTGKGWTFSVKDNGLGIDPAYHEQI 1212

Query: 167  IVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +               I    V  +   +  R+  E  +         + 
Sbjct: 1213 FMIFRRLHTKAEYPGTGIGLAVVKRIVERHGGRIWVESEEGSGSTFLFTIP 1263


>gi|189467846|ref|ZP_03016631.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
 gi|189436110|gb|EDV05095.1| hypothetical protein BACINT_04238 [Bacteroides intestinalis DSM
           17393]
          Length = 507

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 61/230 (26%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           + +       S  L +   + + H+I +P+ AI     +L E        E + +I  ++
Sbjct: 271 LLEAKEKAEESNKLKSAFLANMSHEIRTPLNAIVGFSSILSEYIQEEDAKEYVHIIEENN 330

Query: 58  MSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              +  +             +           SL  +  I ++          +    T 
Sbjct: 331 QLLLQLINDILDISRIEAGILEFIEENMDVNASLYEIKAIAELKVSPKIEIHLLPGLETC 390

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
               +     +++ N    A      G          +    F ++  G      E    
Sbjct: 391 VIHTVPHRVKQVINNYVSNAIKHTEAGHIDIGYYTPQEGYIRFFVRDTGTGI-PTENQKH 449

Query: 167 IVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  V  +S      +      ++A +   +L               + 
Sbjct: 450 IFERFVKLDSFKQGTGLGLSICTIIAEKMNGKLGVNSTLGKGSEFWFEIP 499


>gi|160935145|ref|ZP_02082528.1| hypothetical protein CLOBOL_00040 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441876|gb|EDP19573.1| hypothetical protein CLOBOL_00040 [Clostridium bolteae ATCC
           BAA-613]
          Length = 493

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 63/235 (26%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----------------ELLDEVGI 45
            +N    +    L + L   I HD+ +P+  I  S                  +L ++  
Sbjct: 253 KENTRIQVERERLKSTLLRSISHDLRTPLTGITGSAGFLLDNLGIMDEATIKSMLKDICS 312

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + E +  +  + ++     +           VD L+                K       
Sbjct: 313 DSEWLSTMVENLLNLTRIQEGRLDINKKKEVVDDLVASAVRLVSNRVGNHTLKMETPEDI 372

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  R   ++L+NL   A      G  VT+ V+   N   F +  NG      +K  
Sbjct: 373 LLVSVDGRLFIQVLVNLLDNAFRHSGTGTTVTLRVKQDGNCLKFVVSDNGIGI-PNDKID 431

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I D    +  +         +       +       +          V    + 
Sbjct: 432 KIFDNFFTTAYENGDKQRGVGLGLTICKAMVEAQGGTIRAFNSPQGGAVFEVAMP 486


>gi|26988136|ref|NP_743561.1| integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida KT2440]
 gi|24982867|gb|AAN67025.1|AE016331_2 C4-dicarboxylate transport sensor protein [Pseudomonas putida
           KT2440]
          Length = 585

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 70/235 (29%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + S  L AL  + + + H+I  P+      LE L             + ++ 
Sbjct: 347 LRTAQEGLVQSAKLAALGQMSAAMAHEINQPLTTQRMQLETLRLLLDHGRHDEARQALEP 406

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104
           +             ++     +       +D    +     +         V+  + ++ 
Sbjct: 407 LEQMLTRMAALTSHLKTFARNSPMGLRERLDLATVVDQALHLLEARLRNEEVEVALYLAR 466

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPE 162
                  +    ++L+NL   A  ++         I ++  ++    S+  +G      +
Sbjct: 467 PAWVRGDAIRLEQVLINLLHNALDAMLDKRYKRLEIRIEPDEDLWRLSVLDSGGGIAEAD 526

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++ D    +    +   +       + HE   +L  E +      LS  L +
Sbjct: 527 L-AKVFDPFFTTKPVGEGLGLGLAISYGIVHEAGGQLRAENLPG-GARLSLTLPR 579


>gi|3953516|dbj|BAA34717.1| sensor kinase rtpA [Pseudomonas tolaasii]
          Length = 917

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 60/239 (25%), Gaps = 27/239 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                L +  + +   + + H+I +P+  I     LL +  +    +  +     SA   
Sbjct: 274 TRKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELSPRQLDYLGTIEKSADNL 333

Query: 64  LKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGE 107
           L  +     ++              +    L D   ++       +      V       
Sbjct: 334 LGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDTPLA 393

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEK 163
            +       +IL NL   A      G  V  ++ + +     +   S++  G      + 
Sbjct: 394 LVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSNQDV 453

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLEK 215
                  +              +       L  +    +  +           S  L K
Sbjct: 454 RALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNLPK 512


>gi|46201657|ref|ZP_00054598.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 449

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 61/232 (26%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            + +  + S ++  A + S   HD+  P+  +   + +L+            + +   + 
Sbjct: 220 TEELARSNSDLEQFAFIAS---HDLREPLRMVSAYMGMLERRFGSMIGPEGADYIAYAKE 276

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-------- 107
            +      +  +          + L  +   E +      +   +               
Sbjct: 277 GAQRMDRLVLDLLEYSRVGRMEEELQPVPLDEVLDGVIANLSPSIAQCGAQVERAAPLPS 336

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFP--EK 163
              +  E  ++L NL   A         + +  S          S+  NG        ++
Sbjct: 337 IPVIRGEMVQVLQNLIGNAVKYREPSRPLRVLVSAVRDGGLWRISVADNGIGIAPEFGDR 396

Query: 164 FTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I          +   I       +   +  R+  + +       S  L 
Sbjct: 397 IFRIFQRLHTRDRFEGTGIGLAICKRIVERHGGRIWVDSVQGDGATFSFTLP 448


>gi|323497639|ref|ZP_08102656.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM
           21326]
 gi|323317388|gb|EGA70382.1| putative sensor/response regulator hybrid [Vibrio sinaloensis DSM
           21326]
          Length = 566

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 65/234 (27%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-------MQLIR 54
            K       S        + I H++ +P+  +  S ELL +  ++ E        +    
Sbjct: 192 QKARARAEESERSTKEFVAMINHELRTPLNGLLGSAELLADTSLDGEQSVLLNNLIHSGG 251

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------VSWTGEK 108
           L        L F +++ G    + +     DI  ++          +      +      
Sbjct: 252 LLRHIINDILDFSKMSAGMMELIPTRFDWRDIRDMLTGVFEPRANEKGIGFNLIELNPMP 311

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +R +I   L  +   ++    +  V+I     + +  F ++  G      E   Q
Sbjct: 312 EAFIGDRERISQVLVNLVGNAIKFTHQGSVSIETDWQEGQVSFRVRDTGIGI-DQESMAQ 370

Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D  V+         +   +       L    K  L               + 
Sbjct: 371 LFDPFVQADRTAKRNYEGTGLGLAICKRLVEMMKGELTVVSSKGVGSEFRVKIP 424


>gi|313500371|gb|ADR61737.1| Integral membrane sensor signal transduction histidine kinase
           [Pseudomonas putida BIRD-1]
          Length = 585

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
           +       + S  L AL  + + + H+I  P+      LE L             + ++ 
Sbjct: 347 LRTAQEGLVQSAKLAALGQMSAAMAHEINQPLTTQRMQLETLRLLLDHGRHDEARQALEP 406

Query: 53  IRLSSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQV---IEDFIAVDKRVQVSW 104
           +             ++     +       +D    +     +         V+  + ++ 
Sbjct: 407 LEQMLTRMAALTSHLKTFARNSPMGLRERLDLATVVDQALHLLEARLRNEEVEVALYLAR 466

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT--ISVQDSKNENIFSLKINGNLARFPE 162
                  +    ++L+NL   A  ++         I ++        S+  +G      +
Sbjct: 467 PAWVRGDAIRLEQVLINLLHNALDAMLDKRYKRLEIRIEPDGELWRLSVLDSGGGIAEAD 526

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++ D    +    +   +       + HE   +L  E +      LS  L +
Sbjct: 527 L-AKVFDPFFTTKPVGEGLGLGLAISYGIVHEAGGQLRAENLPG-GARLSLTLPR 579


>gi|300311808|ref|YP_003775900.1| two component sensor histidine kinase [Herbaspirillum seropedicae
           SmR1]
 gi|300074593|gb|ADJ63992.1| two component sensor histidine kinase protein [Herbaspirillum
           seropedicae SmR1]
          Length = 289

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 63/241 (26%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSS---MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           +         +     L     + + H++ +P+ AI    + L     + + +       
Sbjct: 33  LETQRAARRQADSVTRLKDEFLATLSHELRTPLNAIVGWTQYLLNDHSDADRLVKGLQVI 92

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-- 115
                    M         + +     +   +    +A +    V    E   +      
Sbjct: 93  ERNARLQAQMVEDLLDMSRMLAGKLRLETRPMDLASVAEEAIAAVRPAAEARQIELHPAL 152

Query: 116 -------------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         +++ NL M A    PR G+V++S++   +     +  NG   +   
Sbjct: 153 GQGGVILGDPARLQQVVWNLLMNAIKFTPRQGRVSLSLRQHDDTVALEVSDNGRGIKGEF 212

Query: 163 ---KFTQIVDGNVESTIDSH-----DIQFYYVILLAHENKIRLLPEII-DDHNVVLSALL 213
               F +    +V +           +       L   +  ++             +  L
Sbjct: 213 LGSVFDRFTQEDVSTGSTGSTASGLGLGLAIARHLVELHGGQIRAASAGPGMGAAFTVTL 272

Query: 214 E 214
            
Sbjct: 273 P 273


>gi|296104922|ref|YP_003615068.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059381|gb|ADF64119.1| aerobic respiration control sensor protein ArcB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 777

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 53/215 (24%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                  Q  +  ++      +    + +       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFLADLENLSGLQAQQKGLSFVMEPTLPLPHKVVTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVAVRIRYDEGDMLHFEVEDSGIGIPQEEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +            +  
Sbjct: 468 GTGIGLAVSKRLAKSMGGDITVASQAGKGSTFTLT 502


>gi|254435188|ref|ZP_05048695.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Nitrosococcus oceani AFC27]
 gi|207088299|gb|EDZ65571.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Nitrosococcus oceani AFC27]
          Length = 733

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 58/231 (25%), Gaps = 26/231 (11%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDE--------------VGIEDEVMQL 52
           + +    A   +  R+ H+I +P+  I  S E L                  +   ++  
Sbjct: 491 VQAQRNAAWGEVARRLAHEIKNPLTPIQLSAERLRRKYLKLLPTDQIQPLDRLTHTIIAQ 550

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--D 110
           +           ++ R       S+D    + ++ ++                       
Sbjct: 551 VEAMKEMVNAFSEYARNPALQQQSLDFNSLVKEVLELYRGDENKLYIETQLAPQPLWLLA 610

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGNLARFPEK 163
                 ++L NL   A  ++    K       ++             +   G     PE 
Sbjct: 611 DPSRLRQLLHNLLKNALEAMANSPKTPHITVQTRYREDKKREWVELQIIDQGPGI-PPEL 669

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  + +  V +      +    V  +  E    +           L   L 
Sbjct: 670 YQNLFEPYVSTRPKGTGLGLAIVKRIVEEQGGHVAARNPPGGGACLIIQLP 720


>gi|223937695|ref|ZP_03629597.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893667|gb|EEF60126.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 982

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 66/234 (28%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----- 55
           +A+     +    L +   S + H+  +P+G I +S E+L     + E +          
Sbjct: 741 LAREKELGV----LKSSFVSLVSHEFRTPLGIIMSSAEILHSYLDQLETIHRQEHLESIA 796

Query: 56  --SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-------DKRVQVSWTG 106
             +   A +  + +       G ++       +                    + ++   
Sbjct: 797 KNAKRMAGMMEEVLLFGQVEAGKMELHPAPLSLSSFCRRLKDEILSATDGQCPIVLTMEA 856

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              D+  +   +          A      G  V   V     + +F ++  G      ++
Sbjct: 857 FPTDIFADERVLRHIFTNLLLNAVKYSRAGSPVHFMVAQEGKDAVFQVRDQGIGIPEADQ 916

Query: 164 FT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    G+  + +    +    V      +  R+  E + D    ++  L 
Sbjct: 917 QWLFKAFHRGSNAANLPGTGLGLVIVKRSVELHNGRIKVESVVDQGTAITVRLP 970


>gi|92113190|ref|YP_573118.1| Hpt sensor hybrid histidine kinase [Chromohalobacter salexigens DSM
           3043]
 gi|91796280|gb|ABE58419.1| Hpt sensor hybrid histidine kinase [Chromohalobacter salexigens DSM
           3043]
          Length = 695

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 61/237 (25%), Gaps = 26/237 (10%)

Query: 3   KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +   +   +  +       + + H++ +P+  +   L++L++   +++  Q       
Sbjct: 169 QELQRAVQQAEAASQSKSEFMAIMSHEVRTPLNGVVGMLDVLEDEPCQEKREQHFATLRE 228

Query: 59  SAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------S 103
           S           +  +    G +D       + +++       +  Q             
Sbjct: 229 STASLRAVINDVLDYSKIEAGRLDLEHSPFPLTRMVSRLAEGYQSRQTSDVSLIVQLGDD 288

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                I  +    ++L+NL   A      G               F ++  G      + 
Sbjct: 289 LPPVVIGDATRLRQVLMNLMDNAFKFTQVGSITLSVQSRKPATIFFEVRDTGVGI-DKQV 347

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +             +   +       L       L    + D   V    L 
Sbjct: 348 QAALFEPFTQVDTSLSRRHEGTGLGLAICYRLVEAMGGHLELNSMPDLGSVFHFCLP 404


>gi|24111778|ref|NP_706288.1| phosphate regulon sensor protein [Shigella flexneri 2a str. 301]
 gi|30061896|ref|NP_836067.1| phosphate regulon sensor protein [Shigella flexneri 2a str. 2457T]
 gi|82542889|ref|YP_406836.1| phosphate regulon sensor protein [Shigella boydii Sb227]
 gi|110804423|ref|YP_687943.1| phosphate regulon sensor protein [Shigella flexneri 5 str. 8401]
 gi|300936384|ref|ZP_07151312.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 21-1]
 gi|24050565|gb|AAN41995.1| positive and negative sensor protein for pho regulon [Shigella
           flexneri 2a str. 301]
 gi|30040140|gb|AAP15873.1| positive and negative sensor protein for pho regulon [Shigella
           flexneri 2a str. 2457T]
 gi|81244300|gb|ABB65008.1| positive and negative sensor protein for pho regulon [Shigella
           boydii Sb227]
 gi|110613971|gb|ABF02638.1| positive and negative sensor protein for pho regulon [Shigella
           flexneri 5 str. 8401]
 gi|281599732|gb|ADA72716.1| Phosphate regulon sensor protein PhoR [Shigella flexneri 2002017]
 gi|300458490|gb|EFK21983.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 21-1]
 gi|313646985|gb|EFS11442.1| phosphate regulon sensor kinase PhoR [Shigella flexneri 2a str.
           2457T]
 gi|332098651|gb|EGJ03617.1| phosphate regulon sensor kinase PhoR [Shigella boydii 3594-74]
 gi|332760678|gb|EGJ90966.1| phosphate regulon sensor kinase PhoR [Shigella flexneri 4343-70]
 gi|333007828|gb|EGK27304.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-218]
 gi|333022015|gb|EGK41260.1| phosphate regulon sensor kinase PhoR [Shigella flexneri K-304]
          Length = 431

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|148264793|ref|YP_001231499.1| histidine kinase [Geobacter uraniireducens Rf4]
 gi|146398293|gb|ABQ26926.1| histidine kinase [Geobacter uraniireducens Rf4]
          Length = 460

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 64/228 (28%), Gaps = 17/228 (7%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLI 53
            + +   + +  L     L + + H++ +P+ AI + L  L            D + Q  
Sbjct: 225 QRAVLSMVQNEKLALTGKLVAGVAHEVNNPLAAISSCLYNLGLSASEKMQADIDTLKQGF 284

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---- 109
                       F          V S +   +        +        +          
Sbjct: 285 FRIQNIVKQLSDFSHAGNLALQPVRSDLFFHEAASFGGMALKKHSLSLKAADMCVPPVAI 344

Query: 110 -DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                +  +++L++ + A  + P  G +  S     +   FS+K  G      E   +I 
Sbjct: 345 LMDKGKLHQVVLDILINAADASPPQGTIEFSTFLCGDHYCFSVKDEGEGV-PDEAREKIF 403

Query: 169 DGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +        I       +   +   +L +       V + ++ 
Sbjct: 404 EIFYTTKPSGKGSGIGLAICKTIVDMHHGAILLDSRRGE-TVFTVMIP 450


>gi|330964415|gb|EGH64675.1| sensor histidine kinase [Pseudomonas syringae pv. actinidiae str.
           M302091]
          Length = 355

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIH---------NSLELLDEVGIEDEVMQL 52
           A++    ++ ++ +  L + I H++  P+ AI           + E ++       V ++
Sbjct: 117 ARSQLAQIARVNQLGELAASIAHEVNQPLSAIVISGNACQRWLAAEPVNLEKARQAVERM 176

Query: 53  IRLSSM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105
           I  ++             K       +    D++  +  +     D   V   V+V    
Sbjct: 177 IGDANRAGDIIVRVRALAKRSSTYKEWISVADTVAEIVALAHSEIDAQGVTLTVEVPEGL 236

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARF 160
              +    +  ++LLNL +    ++ +                  +  F+++ NG     
Sbjct: 237 PPLLADRVQIQQVLLNLMLNGVDAMSKVETDQAQLEIRVDWREGGDIGFAVRDNGIGV-P 295

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ D    +  +   I       +   +  R+               L 
Sbjct: 296 ADNTDRLFDAFYTTKQEGMGIGLAISRSIIEAHGGRIWVTPNPSIGATFHFTLP 349


>gi|298243600|ref|ZP_06967407.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
 gi|297556654|gb|EFH90518.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
            racemifer DSM 44963]
          Length = 1121

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 66/214 (30%), Gaps = 18/214 (8%)

Query: 20   SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLA----- 70
            S   H++ +P+ A+     LL       GI+   +  ++      I  ++ +        
Sbjct: 893  SMASHELRNPLTALKMQTTLLHRQLAKQGIQAPALSSMKTQINKLIRLVEELLDVSKIQA 952

Query: 71   ---FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEKIDLSRERAKILLNLFMVA 126
                    +VD    L +I   ++        V   +     +       ++  NL   A
Sbjct: 953  GRLEYRQETVDLDALLREIANTMQQTNPSHTIVMRGAVQTSLLADRDRLGQVFTNLLSNA 1012

Query: 127  HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDSHDI 181
                P    V + +  +++     ++ +G      +    F +     G+ +  I    +
Sbjct: 1013 IKYSPGAETVEMDLSATEDAVTIRVRDHGLGIPREQRDKIFERFYRVAGSTQRAIPGLGM 1072

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              Y V  +   +   +  E    +    +  L K
Sbjct: 1073 GLYIVAEIVKRHGGTITVESDVGNGSTFTVTLPK 1106


>gi|260768322|ref|ZP_05877256.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972]
 gi|260616352|gb|EEX41537.1| hypothetical protein VFA_001373 [Vibrio furnissii CIP 102972]
          Length = 568

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 61/233 (26%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++      S        + I H++ +P+  +  S ELL +  ++ E +  +     S  +
Sbjct: 193 ESRKRAEESEKATKEFVAMINHELRTPLNGLLGSAELLSDTSLDPEQLSYLTNLQHSGDM 252

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTG 106
               +     ++     ++ L   +   +D       +                   +  
Sbjct: 253 LRVIINDLLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKAREKKIEFVVNTRGEFPT 312

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             I       +IL+NL   A       G VT++ +      +  +   G         T 
Sbjct: 313 YWIGDVERINQILVNLVGNAIKFT-HRGAVTVAARWVDERLLLRISDTGIGIPLAAHDTL 371

Query: 167 IVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +     +   +       L       +    ++         + 
Sbjct: 372 FDPFTQVDRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGEGTEFFVSIP 424


>gi|323341563|ref|ZP_08081800.1| sensor histidine kinase [Lactobacillus ruminis ATCC 25644]
 gi|323091014|gb|EFZ33649.1| sensor histidine kinase [Lactobacillus ruminis ATCC 25644]
          Length = 347

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 16/213 (7%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H+  +PI AI     LL    +  E  + +     +       +      +   
Sbjct: 128 FVSNVSHEFKTPINAIEGYTMLLQGEELSPEQEKYVEKILFNTQRLSGLVGNILLLSKLE 187

Query: 78  DSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-RAKILLNLFM 124
           +  I +                 +   +   +   QV     K   +      I +NL  
Sbjct: 188 NQNIPMKKTEYRLDEQIRQAFLSLETKWTEKEIGFQVELEEVKYTGNEGLFMHIWINLLD 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDI 181
            A    P  G +T+ ++  ++   F L+  G           F +    +     + + +
Sbjct: 248 NAIKFSPSKGTITMFLKQEQDSVKFILEDEGPGIEDDVKSRIFDKFYQVDGSHKAEGNGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V  +       +  E  +         L 
Sbjct: 308 GLALVKRIVDSAGGTIKAENREYGGCRFVIELP 340


>gi|226323503|ref|ZP_03799021.1| hypothetical protein COPCOM_01278 [Coprococcus comes ATCC 27758]
 gi|225208187|gb|EEG90541.1| hypothetical protein COPCOM_01278 [Coprococcus comes ATCC 27758]
          Length = 427

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/218 (9%), Positives = 60/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
             + + HD  SP+ +I   +E + +      ++ + + +I   +       + +     +
Sbjct: 206 FVANVSHDFRSPLTSIKGYVEAMADGTIPPEMQGKYLNIILFETERLTDLTRDLLTLNEF 265

Query: 74  TGSVDS-------LIGLGDIEQVIEDFIAVDKRVQVSW-----TGEKIDLSRERAKILLN 121
                        +  +        +     K++ +       T        +  ++L N
Sbjct: 266 DTKDLLLDKTDFDIHEVIRNTAASFEGTCTAKKISIELLLATRTLYVHADQHKIQQVLYN 325

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID- 177
           L   A         +TI      ++   S+K  G         + + +    ++    D 
Sbjct: 326 LLDNAIKFSNPESTITIETTPRGDKVYTSVKDYGIGIPKSSINKIWERFYKSDLSRGKDK 385

Query: 178 -SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +   +   +     +         L 
Sbjct: 386 KGTGLGLSIVKEIIQAHNENINVISTEGVGTEFIFSLP 423


>gi|307151007|ref|YP_003886391.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981235|gb|ADN13116.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1016

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 31/237 (13%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
               ++ +  L S I HD+ + +  I     LL +          E ++++  SS     
Sbjct: 641 RAQRLESIGTLASGIAHDLNNILQPILFISHLLKQKFPYLDEQTKERLKMLEDSSRRGTS 700

Query: 63  RLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSRE 114
            ++ +             V     L ++ QV +        +Q+    S        + +
Sbjct: 701 LVRQILSFACGEEGSRAHVQVKHILREVIQVAQKTFPKSINIQMKRITSDLWTVHADATQ 760

Query: 115 RAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLAR 159
             ++ +NL + A  ++P                               + S    G    
Sbjct: 761 LHQVFMNLMVNARDAMPEGGNLSLSAENLFIDETFARMDIEAHVGFYVVISFTDTGTGI- 819

Query: 160 FPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I D    +        +    V  +   +   +    +          L 
Sbjct: 820 SSEIIERIFDPFFTTKEPGKGTGLGLSTVRGIVKNHGGFVRVSSVLGKGSQFKVYLP 876


>gi|168702167|ref|ZP_02734444.1| multi-sensor signal transduction histidine kinase [Gemmata
            obscuriglobus UQM 2246]
          Length = 1076

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 58/231 (25%), Gaps = 19/231 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------- 55
            + I    ++ +L A     + HD+ +P+ AI    +++                      
Sbjct: 826  RTIELEAANAELEAF-SYSVSHDLRAPLRAIDGFSQIVLNEYGPQLPADAREYLTDVCAN 884

Query: 56   ---SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                       L F RL                   + E       R     + E     
Sbjct: 885  TLRMGRLVDDLLTFSRLGRQPVRRQPVNTSELVAGCLDELLRQTGARRIEIRSNELPPCD 944

Query: 113  RER---AKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFT-- 165
             +     ++ LNL   A           I V    S +  ++ ++ NG            
Sbjct: 945  ADPALLRQVWLNLLANALKYSSLSSLALIEVGATASPDGPVYFVRDNGVGFDMRYAHKLF 1004

Query: 166  -QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +     +   I    V  + H +  R+  +         S  L +
Sbjct: 1005 GVFQRLHRAEDYEGTGIGLALVQRIVHRHGGRVWADSEPGKGATFSFTLGR 1055


>gi|152998186|ref|YP_001343021.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
 gi|150839110|gb|ABR73086.1| multi-sensor hybrid histidine kinase [Marinomonas sp. MWYL1]
          Length = 842

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 67/231 (29%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           ++       M+++  L   + HD  + + AI  +L++L +   + E              
Sbjct: 462 ESQLRQAQKMEMLGQLTGGVAHDFNNLLAAIMGNLQMLSDSFPQTEDQARYIERALVVSE 521

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            SS      L F R    +  S+     +  +  ++E  +     V+       +    +
Sbjct: 522 KSSNLVQRLLAFSRRQQLFPVSIAIDDLIEGMLDLVEYSVGSHIVVESDLQCPNVVSLID 581

Query: 115 RAKILLNLFM---VAHASLP------RGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +++   L      + +++P         K+              ++ +G      +   
Sbjct: 582 PSQLENALLNLSLNSASAMPDGGRLSFSTKLCTLPDSDVPAIRIRVEDSGEGI-DEDVIG 640

Query: 166 QIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +    +        +    +     ++   +           +   L 
Sbjct: 641 RIFEPFFTTKPVGKGSGLGLSMIYGFVKQSGGEIKVTSEKGKWTRVCLFLP 691


>gi|172065661|ref|YP_001816373.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
 gi|171997903|gb|ACB68820.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           MC40-6]
          Length = 770

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 61/225 (27%), Gaps = 21/225 (9%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           S  L   L + + H++ +P+  I+  +E+L     +    Q I     SA    + +   
Sbjct: 391 SNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSARSLTRMVGDI 450

Query: 71  -----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRER 115
                            VD +    D     +   +    V      +        +   
Sbjct: 451 LDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERL 510

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++L NL   A    P GG VT+++       +  +   G                    
Sbjct: 511 RQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADD 570

Query: 176 ID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                     +    V  +A  +  ++  E    +     +  L 
Sbjct: 571 SPASPRRGLGLGLSIVRHIAGLHGGQVRVESEGRNRGATFTVTLP 615


>gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii]
          Length = 1425

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 61/219 (27%), Gaps = 23/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---- 70
             S + H++ +P+  I    + L       I D+ ++ I     S    L  +       
Sbjct: 320 FMSSMSHELRTPLNGIIGLSDALLVGSCGEINDQALKTITTIKTSGARLLNLINDILDAA 379

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        V+    + D+  + +       ++          +  +  +I+    
Sbjct: 380 SMRKGKLTIKHEKVNLKRVVDDVIDLCQPLAKRGVKLVNDLRENVPFVLGDTGRIIQVFH 439

Query: 124 M---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI-----VDGNVEST 175
                +       G ++IS     +E   ++   G      +          VD +V   
Sbjct: 440 NLIGNSCKFT-HSGNISISAAVKDDEVEVAVADTGIGIPEDKFDQIFLAFEQVDMSVTRK 498

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  L   +  R+  +  ++        L+
Sbjct: 499 YGGTGLGLNLVKQLVEAHGGRISVKSRENQGTTFYFTLK 537


>gi|55376718|ref|YP_134569.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55229443|gb|AAV44863.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 648

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 57/220 (25%), Gaps = 13/220 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +          L     + + HD+ +P+  I   L LL      +E + +I  ++    
Sbjct: 427 RRERELQDQKEQLE-QFAATVSHDLRNPLTVIQGRLALLQ-AEQSNEHLAVIETATDRME 484

Query: 62  IRLKFMRLAFGYTGSV---------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
             ++ +         +          +      +     D   +               +
Sbjct: 485 RIVEDLLWLAREQQEIGSLEPVSIDTAAEAAWKLVSDPADEAELYCDCGADTQPLVKADT 544

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +   +L NLF        R   V +    +     F ++ +G      E   ++ +   
Sbjct: 545 DQFRHLLENLFRNTIDHAGRDVTVVVGGIFADAT-GFYIEDDGPGI-PAEDREKVFEAGY 602

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++     +    V  +A  +   +               
Sbjct: 603 STSESGTGLGLNIVKRVADAHGWDICATESSMGGTRFEIT 642


>gi|39997496|ref|NP_953447.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39984387|gb|AAR35774.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 1015

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 62/239 (25%), Gaps = 29/239 (12%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIR------LS 56
                  M+ V  L   + HD  + +  I    E  LL     +     L         S
Sbjct: 638 QLMQAQKMESVGRLAGGVAHDFNNMLSVILGHTEMALLRMDPNQPTYASLREIDKAAQRS 697

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
           +      L F R        ++    +  +  ++   I  + R+Q         +  +  
Sbjct: 698 ADLTRQLLGFARQQTVSPKVLNLNESISGLLTMLHRLIGENIRLQWQPAANLWQVRMDSS 757

Query: 115 -RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLA 158
              +I+ NL + AH ++                             +     +  NG+  
Sbjct: 758 QIDQIMANLCVNAHDAIADVGEIIIETGNCTFDERDGTIHPHGAVGDYVRIRVSDNGSGM 817

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              E    I +    +        +    +  +  +N   +      D     S  L +
Sbjct: 818 -DKETRAHIFEPFFTTKEVGKGTGLGLATIYGIVKQNNGLIDVASEPDKGTTFSIYLPR 875


>gi|76802511|ref|YP_327519.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76558376|emb|CAI49967.2| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
          Length = 341

 Score =  109 bits (271), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/213 (10%), Positives = 62/213 (29%), Gaps = 7/213 (3%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMS 59
            +       +  L A   S + HD+ +P+   H  L+L  E     + + +         
Sbjct: 131 RREQRLQRQNERLEAF-ASTVSHDLRNPLATAHGYLDLARESGDPEDFDRIDQSLTRMER 189

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
            I  + ++       GS   +     +              ++        ++ +  ++ 
Sbjct: 190 IIDDVLWLAREGQEIGSTSDVELATAVADAWTVVGGAGGDARIEIEDGLGTVTADSDRLR 249

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
             +  +   ++  GG+V      +       ++ +G      E+  ++ +     + D  
Sbjct: 250 QLIENLLGNAVDHGGEVVRVEPTADGFA---IEDDGPGIPESER-ERVFERGHTLSEDGS 305

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +    V  +A  +   +     D         
Sbjct: 306 GLGLAIVDEIAEAHGWSVEITDGDLGGARFEVT 338


>gi|323153584|gb|EFZ39832.1| sensor kdpD domain protein [Escherichia coli EPECa14]
          Length = 566

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 321 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 379

Query: 54  RLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 380 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 439

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 440 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 499

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 500 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 552


>gi|319936817|ref|ZP_08011229.1| sensor protein [Coprobacillus sp. 29_1]
 gi|319808085|gb|EFW04657.1| sensor protein [Coprobacillus sp. 29_1]
          Length = 894

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 70/235 (29%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
                    +  L A L   I HD+ +P+ +I  S        + LDE   +     +  
Sbjct: 653 KSKADLIAKNEQLRANLLRSISHDLRTPLTSISGSAGILLSSSDTLDEKNKKQLYTDIYD 712

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            S     +    + +     G++   +       +             +  +QV    E 
Sbjct: 713 DSLWLINLVENLLSVTRIEDGTMQLNMTTELIEEVVHEALQHISRQGREHHIQVQQDNEF 772

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           I +  +     ++++NL   A    P+G  + I V   K E    ++ +G      E   
Sbjct: 773 ILVKMDTRLMIQVIINLIDNAIKYTPKGSHILIHVFKQKQEVCIDVQDDGPGI-TDEMKP 831

Query: 166 QIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I D           +  S  +       + + +   +          +L  +L 
Sbjct: 832 HIFDMFYTGNMKVADSRRSLGLGLALCKSIVNAHHGTMSVLDNQPKGAILRVILP 886


>gi|262275736|ref|ZP_06053545.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
 gi|262219544|gb|EEY70860.1| hypothetical protein VHA_002719 [Grimontia hollisae CIP 101886]
          Length = 690

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      S+    +   + + H+I +P+ A+   L+ L +  ++DE +  +     SA
Sbjct: 316 LQQARQQAESANAAKSQFLAMMSHEIRTPLNAVMGLLDALQQSLLDDEQVAWVSQMDKSA 375

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIE----------------QVIEDFIAVDKRVQVSW 104
            + L  +   F  +        L                          I ++  +  + 
Sbjct: 376 QLLLTIINDVFDLSRIESERFSLHPELVNIRDSVTIVFNQLRETSSHKAIKLEMDIADNV 435

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +ILLNL   A       G+V +++    N    S+   G       + 
Sbjct: 436 PDNIYQDGNRFTQILLNLVGNAVKFTEE-GRVDVAMSAVNNRLKISVSDTGIGINAERRK 494

Query: 165 TQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     G++        +       L       +  E            + 
Sbjct: 495 DIFQPFTQADGSITRQYGGTGLGLSICKKLVSMMNGSIDFESKPGVGTTFFIDIP 549


>gi|229174680|ref|ZP_04302206.1| hypothetical protein bcere0006_37680 [Bacillus cereus MM3]
 gi|228608782|gb|EEK66078.1| hypothetical protein bcere0006_37680 [Bacillus cereus MM3]
          Length = 424

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 64/224 (28%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           M K+   N+ S      L + + H++ +P+  +   ++LL+                 + 
Sbjct: 201 MQKSEKLNIVSE-----LAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++        +  +K +G      +   ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAMQKDETIVIRVKDSGVGMTKEQLV-RLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGTLEYKSESGKGTEAIIILP 418


>gi|237808812|ref|YP_002893252.1| histidine kinase [Tolumonas auensis DSM 9187]
 gi|237501073|gb|ACQ93666.1| histidine kinase [Tolumonas auensis DSM 9187]
          Length = 432

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 63/224 (28%), Gaps = 22/224 (9%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
            ++     + + H++ +P+  +   LE+L++        + ++   +   +R+  +    
Sbjct: 203 ENMRKNFVANVSHELRTPLTVLKGYLEMLEDELPPPARWKKMQQVMLEQTMRMDSLVDQL 262

Query: 72  GYTGSVDSLIGLGDIEQVIEDFI---------------AVDKRVQVSWTGEKIDLSRERA 116
                ++    +     V    +                 +   QV    +      +  
Sbjct: 263 LTLSRIEVATDIDRNRIVDVPRMLLMLQHEAKALSGSLRHEIVFQVDPELKIYGDEDQLR 322

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
             + NL   A    P G K+T+  +   ++  F++   G      E   ++ D       
Sbjct: 323 SAMTNLVNNAIKYTPAGRKITVDWRRDGSQARFAVTDEGEGIAL-EHLGRLTDRFYRVDK 381

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V      +   L  +         S  + 
Sbjct: 382 ARSRQTGGSGLGLAIVKHALSHHDSMLNVDSTPGKGSTFSFRIP 425


>gi|170756525|ref|YP_001780538.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169121737|gb|ACA45573.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 342

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 75/236 (31%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERKEYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K +++ +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLKQKYYLDEQIRQTILLFEYQWTKKNITLDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEILITIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     D + +    V  +    +  +     ++     +  L K
Sbjct: 287 KNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIKISSHEEVGTEFTVKLPK 342


>gi|166363966|ref|YP_001656239.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
 gi|166086339|dbj|BAG01047.1| two-component hybrid histidine kinase [Microcystis aeruginosa
           NIES-843]
          Length = 391

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 57/235 (24%), Gaps = 23/235 (9%)

Query: 2   AKNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
             N       ++ L     S + HD  +P+  I  S  LL+E        Q +    M  
Sbjct: 149 RTNQLEKAQELNQLKTEFVSMLSHDFRNPLNKILLSAGLLEESRDRLTKDQQVSYFRMIR 208

Query: 61  IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                   +     VD L     + +       +   +     G
Sbjct: 209 SAIKDMDQLLTEVLLIGRADSGRLYCQFDPVDLLDYCQKLVESFIVKPELQSAIIFQIKG 268

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  +   I   L      A    P G  V   +     + +F +   G      + 
Sbjct: 269 SLERGLWDINLIKHILTNLLGNALKYSPEGNPVEFKIIVESEQVVFKIIDRGIGIPSKD- 327

Query: 164 FTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +            I    +    V      +K ++  E  +     ++ +L 
Sbjct: 328 QEHLFKPFYRGSNVDNIQGTGLGLAIVGRCVEAHKGQIYLESEEGKGTKITVILP 382


>gi|220923690|ref|YP_002498992.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219948297|gb|ACL58689.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 737

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 55/224 (24%), Gaps = 29/224 (12%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY------ 73
           + + H+I +P+  I    ++L +  ++ E  +L+     +    L  +     +      
Sbjct: 252 ASMSHEIRTPLNGIIGYTDVLLDQDLKPEQRRLLERIQFAGAALLTVVNDILDFSKIEAG 311

Query: 74  -----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-----LSRERAKILLNLF 123
                      +  + +   +I +                +            ++LLNL 
Sbjct: 312 QVALEPRPFSLVALVSNTVSIIAEAAQRKGLALTVDVDPHMPAAVIGDEDRLRQVLLNLL 371

Query: 124 MVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
             A      G        +          FS+   G      ++   +            
Sbjct: 372 NNALKFTHEGSITLQVRCEDSLSDCQWICFSVTDTGIGI-PKDQHEHLFHRFYQVQHSST 430

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLEK 215
             I    +       L       +  E  +          LL +
Sbjct: 431 REIGGTGLGLAISKRLISLMGGEIGLESEEGKGSRFWFKVLLPR 474


>gi|270308723|ref|YP_003330781.1| sensor histidine kinase [Dehalococcoides sp. VS]
 gi|270154615|gb|ACZ62453.1| sensor histidine kinase [Dehalococcoides sp. VS]
          Length = 426

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            K +   +   M         + HD+ +P+ +I +S  +L  +  + +   L      S 
Sbjct: 185 EKKLRKRIQTEMKSRLEFTRIVVHDLKTPLTSIISSSGVLSNIAADVKYKALASNIYEST 244

Query: 61  IIRLKFMRLAFGYTG---------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +     +                              +   +++      V   V     
Sbjct: 245 MNLNTRLDELLDMAQCEVRDPKLNRSRFNIKEMLEHIISIQQEICNTNHIVFNIVIAPEV 304

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       +IL NL   A       G ++I++   +N  +FS+  +G      E   
Sbjct: 305 TFIIADEDRLKQILDNLIDNAIKYSADSGIISINISQDQNNVLFSISDSGIGIEPDEIKN 364

Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +  +    +    V      +  R+  E            + 
Sbjct: 365 IFKPYYRVENRQKKLQGLGLGLSIVRTYVKLHGGRIWVESEYGKGATFLFTIP 417


>gi|149920525|ref|ZP_01908992.1| Signal transduction histidine kinase-like protein [Plesiocystis
           pacifica SIR-1]
 gi|149818569|gb|EDM78015.1| Signal transduction histidine kinase-like protein [Plesiocystis
           pacifica SIR-1]
          Length = 729

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 72/240 (30%), Gaps = 29/240 (12%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIED-----EVM 50
             N+   L     L ++  L S + H+I +PI +I N  +L+    +   +      E++
Sbjct: 485 RSNLEAQLRQQQKLESIGTLASGVAHEINNPIQSIMNYADLMQIRSDPDSDIADFAGEIV 544

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGEKI 109
                 +      L F R    +      +  +     ++   +   +  ++V    +  
Sbjct: 545 AETERVANIVRNLLAFARQEKEHHSPARMIDIVESTLTLMSAVMRRQQVSLEVDVPADLP 604

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDS--------------KNENIFSLKING 155
            +     ++      +   +L    +      ++              +   I  ++ +G
Sbjct: 605 KIKCRSQQVQQVFMNLFGNALHALNERYPQYDENKVIQVRARVAEIEGEPWVITEVEDHG 664

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +    P    +I D    +    +   +       +  E++  L  E +          L
Sbjct: 665 SGIPAP-VLERIFDPFFTTKGRDEGTGLGLSVSHGIITEHRGELEVESVVGEYTRFYVKL 723


>gi|197119599|ref|YP_002140026.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088959|gb|ACH40230.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 914

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 65/240 (27%), Gaps = 33/240 (13%)

Query: 7   FNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAII- 62
             L +  L +L  L   I HD  + +  I  +  L L  +  +    + ++    +A+  
Sbjct: 537 QLLHAQKLESLGILAGGIAHDFNNILTGILGNSSLGLMRIDPDSPAAENLQNIEKAAVRA 596

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                  L +          V+  + L ++  ++E  ++    +++S   E   +  +  
Sbjct: 597 ADLAKQMLAYSGKGMFVVEPVNLNLLLEEMIHLLEVSVSKKAELKLSLAQELPPVQADPT 656

Query: 117 KILLNLFMVAHASL----------------------PRGGKVTISVQDSKNENIFSLKIN 154
           ++   +  +   +                                           +   
Sbjct: 657 QLRQIVMNLVINASEATGEQGGTISISTGYRYFDQSYLKEAWFDCELAEGEFVFLQVADT 716

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G          +I D    +      +    V+ +   +K  +  +         + LL 
Sbjct: 717 GCGMDESTLL-RIFDPFFTTKFTGRGLGMSAVLGIIRGHKGAIKVQSKTGEGTTFTVLLP 775


>gi|28869841|ref|NP_792460.1| bacteriophytochrome [Pseudomonas syringae pv. tomato str. DC3000]
 gi|28853086|gb|AAO56155.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 993

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    ++D   +         
Sbjct: 523 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRRALG 582

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 583 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIELNC 642

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I      ++ +F +  +G     
Sbjct: 643 TSAQGLVIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGIGIPA 702

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  +   D   V S  L 
Sbjct: 703 QHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTLP 758


>gi|71281830|ref|YP_271243.1| osmolarity sensor protein [Colwellia psychrerythraea 34H]
 gi|71147570|gb|AAZ28043.1| osmolarity sensor protein EnvZ [Colwellia psychrerythraea 34H]
          Length = 430

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 58/202 (28%), Gaps = 5/202 (2%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           LL + I HD+ +P+  I  + E+++E   +     +         I  +F+      +  
Sbjct: 226 LLMAGISHDLRTPLTRIRLASEMMNESD-DFLKEGIETDIDDMNNIIDQFIDYIRHDSKD 284

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV 136
              L  L  +   + +      RV     GE   +      +   L  +   ++      
Sbjct: 285 KAELGDLNLLVDEVLNVETPIDRVITFHPGECAKIPLRHVAVRRALANLVQNAIRYTTDE 344

Query: 137 TISVQDSK-NENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHE 192
                  + +   F +  NG      +    F     G+     +   +    +  +   
Sbjct: 345 IEVFTGVEKDYAFFIVSDNGAGIPDADIERLFQPFTQGDTARGTEGSGLGLAIIKRIVDT 404

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           +  ++         +     L 
Sbjct: 405 HGGKVKLSNKPSGGLQAKVYLP 426


>gi|37678381|ref|NP_932990.1| nitrogen regulation protein NR(II) [Vibrio vulnificus YJ016]
 gi|161501838|ref|NP_759867.2| nitrogen regulation protein NR(II) [Vibrio vulnificus CMCP6]
 gi|37197120|dbj|BAC92961.1| nitrogen regulation protein NtrB [Vibrio vulnificus YJ016]
 gi|319999145|gb|AAO09394.2| Nitrogen regulation protein NR(II) [Vibrio vulnificus CMCP6]
          Length = 350

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 67/232 (28%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               N  +    A LL   + H+I +P+G +  + +LL+++  +  + +  ++    A  
Sbjct: 120 TQEMNQHAQQQAAKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTQIIIEQADR 179

Query: 63  RLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
               +         G     +    L  + Q++E        ++  +     D+  +  +
Sbjct: 180 LRALVDRLLGPQKPGKKQQTNLHQVLEKVRQLVELESEQTLVIERDYDPSLPDIYIDADQ 239

Query: 118 ILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           I   +  +   +                    +  I  Q  K      +  NG      E
Sbjct: 240 IEQAMLNIVSNASQILAHQEDGKISIRTRTVHQANIHGQRCKVAARIEIMDNGPGIPV-E 298

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 299 LQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TNFTIYLP 349


>gi|186680572|ref|YP_001863768.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
 gi|186463024|gb|ACC78825.1| response regulator receiver sensor signal transduction histidine
           kinase [Nostoc punctiforme PCC 73102]
          Length = 387

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQL 52
            +     + + +L    +   S + HDI +P+  I  +  LL               +Q+
Sbjct: 147 EERTAELVKANELNQFKSEFVSMLSHDIRNPLNTILLAAGLLQNQDERLTKEKKLNHLQM 206

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------ 106
           IR +  +    L  +               +    +     +  + R+  S         
Sbjct: 207 IRSAIKNMAKLLDEVTFIGKADSGRLGYELICIDLEAFCRQMVEEVRLMASDKHLTLVFA 266

Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                 E +        IL NL   A      GG V   +   +   IF ++ +G     
Sbjct: 267 SCGQLDEALWDESLLRHILGNLLSNAIKYSLPGGIVRFELIGQEKTVIFRIQDSGIGI-P 325

Query: 161 PEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++      +     I    +    V          ++     +     +  L 
Sbjct: 326 QEDQKRLFQPFQRADNVGTIPGTGLGLAIVKKCVDAYGGEIIVNSQVEVGTTFTVTLP 383


>gi|328473184|gb|EGF44032.1| sensor histidine kinase [Vibrio parahaemolyticus 10329]
          Length = 806

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      +S +      + + H+I +P+  +  + ++L +  + DE  + +     S 
Sbjct: 339 LEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDEQRKHLSTLYDSG 398

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +     Y+      +   +    IE  I   K V  +                 
Sbjct: 399 DHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQFKVTSLVPV 458

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
                +      ++L NL   A     RG             K   + ++K  G      
Sbjct: 459 GRWYDNDKARLRQVLFNLLNNAVKFTDRGIVEVTLSEQTHYDKTVLVIAIKDTGIGI-SK 517

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           E   +I                   +    V  +A      +  +  ++     + 
Sbjct: 518 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIGTTFTV 573


>gi|325168411|ref|YP_004280201.1| two-component sensor histidine kinase protein [Agrobacterium sp.
           H13-3]
 gi|325064134|gb|ADY67823.1| probable two-component sensor histidine kinase protein
           [Agrobacterium sp. H13-3]
          Length = 632

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQL 52
                   S  DL           L   I H+I  P+ AI  +    L  +      ++ 
Sbjct: 386 RAEESLRQSQADLAHVTRLTTIGELAVSIAHEINQPLMAIVTNAGTCLRWLQDGHTDLEQ 445

Query: 53  IRLSSMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
            R ++   +                 +         D    L ++  ++++ +       
Sbjct: 446 ARRAAERVVQDGHRAGEIVASIRAMAQRTPLRMKKTDFNTALREVLFLLQEELQSRGLQV 505

Query: 102 VSW----TGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKIN 154
           V+         +    +  ++LLNL M +  ++            V+ +  +   S+   
Sbjct: 506 VTDITTGPVHVLGDCTQLQQVLLNLIMNSAEAMHSHDSAVITVRCVKRTGGDIEVSVSDT 565

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           G+     +   +I +    +  D   +       +   +  R+            +  L
Sbjct: 566 GHGISPDQL-DRIFEAFYTTKSDGIGMGLSICRSIVEAHGGRIWATNNHPRGASFTFTL 623


>gi|311744492|ref|ZP_07718292.1| sensor histidine kinase [Aeromicrobium marinum DSM 15272]
 gi|311312111|gb|EFQ82028.1| sensor histidine kinase [Aeromicrobium marinum DSM 15272]
          Length = 477

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 16/213 (7%), Positives = 50/213 (23%), Gaps = 16/213 (7%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLKFMRLA 70
            L +   H++ +P+ ++  ++ELL + G  D  +      +++             +   
Sbjct: 248 QLVADAGHELRTPLTSLRTNIELLRQAGRSDRPLSDDQRDEIMADVGAQVEELTTLIGDL 307

Query: 71  FGYTGSVDSLIGLGD------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                                + Q ++        +          +  E   +   +  
Sbjct: 308 VELARDEPLQNDPEPLDLAEVVTQSLDRVRLRAPSLTFDVDLSPWMVIGEPRMLERAVTN 367

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDI 181
           +   +                  +  +  +G      +    F +        T+    +
Sbjct: 368 LLDNAAKWSPAGGTVRVRLTGGAVV-VSDDGPGISPDDLPHVFDRFYRSTEARTLPGSGL 426

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               V   A  +   +            S  + 
Sbjct: 427 GLSIVRRCAERHGGSVTVTSDPGEGATFSLSIP 459


>gi|315502510|ref|YP_004081397.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
 gi|315409129|gb|ADU07246.1| response regulator receiver sensor signal transduction histidine
           kinase [Micromonospora sp. L5]
          Length = 1227

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 52/216 (24%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHN-SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT---- 74
           + + H+  +P+  +     E+L +  + +  +  + +   + +  LK +     ++    
Sbjct: 354 ANVSHEFRTPLTLVLGPMEEMLADRELPERYLDRLTVMHRNGLRLLKLVNTVLDFSRLES 413

Query: 75  -------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE----KIDLSRERAKILLNLF 123
                     D       +               V                  KI+LNL 
Sbjct: 414 GRLAARYQPTDLSDYTSRLASTFRSATERAGLRLVVDCPPLPAPVYVDRDMWEKIVLNLL 473

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTIDS 178
             A      G        D        +   G      E    F +     G    T + 
Sbjct: 474 SNAVKFTFDGEIRVRVRADDGAAV-LEVTDTGVGIAPEELPQVFERFHRVAGARSRTHEG 532

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I    V  L       +    + D     +  + 
Sbjct: 533 TGIGLALVRELVEMQGGTVTAHSVVDRGTTFTVTMP 568


>gi|260901217|ref|ZP_05909612.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
 gi|308106702|gb|EFO44242.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
          Length = 806

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      +S +      + + H+I +P+  +  + ++L +  + DE  + +     S 
Sbjct: 339 LEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDEQRKHLSTLYDSG 398

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +     Y+      +   +    IE  I   K V  +                 
Sbjct: 399 DHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQFKVTSLVPV 458

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
                +      ++L NL   A     RG             K   + ++K  G      
Sbjct: 459 GRWYDNDKARLRQVLFNLLNNAVKFTDRGIVEVTLSEQTHYDKTVLVIAIKDTGIGI-SK 517

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           E   +I                   +    V  +A      +  +  ++     + 
Sbjct: 518 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIGTTFTV 573


>gi|254560792|ref|YP_003067887.1| sensor hybrid histidine kinase with PAS and two responser regulator
           receiver domains [Methylobacterium extorquens DM4]
 gi|254268070|emb|CAX23942.1| putative sensor hybrid histidine kinase with PAS and two responser
           regulator receiver domains [Methylobacterium extorquens
           DM4]
          Length = 695

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 74/239 (30%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            K +  +L  +  L A+  L   I HD  + +  +  +L+L+              +  +
Sbjct: 307 RKELELSLQHASKLEAVGRLTGGIAHDFNNMLSIVIGNLDLVKSSLSGNEKALRRIESAI 366

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     +      L F R +     ++D    +  + +++E  +     +         +
Sbjct: 367 EGAHRCAELTSRLLAFSRRSPLQPRALDFTSFIPGLIKLLERTLGERIAISADLQDGLPE 426

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK----------NENIFSLKINGNL 157
           +  + A+    L      A  ++P GG + I ++  +          +    ++  +G  
Sbjct: 427 VCVDHAQFEAALINLAVNARDAMPDGGTLGIRIKRHEADAQEDAEQVHSVEIAVTDSGTG 486

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P    ++ +    +        +    V     ++   +  +   D        L 
Sbjct: 487 M-SPAVLARVFEPFFTTKEAGKGTGLGLSMVYGFVQQSGGTIAVDSNPDQGTRFVITLP 544


>gi|229012407|ref|ZP_04169583.1| hypothetical protein bmyco0001_28510 [Bacillus mycoides DSM 2048]
 gi|228748858|gb|EEL98707.1| hypothetical protein bmyco0001_28510 [Bacillus mycoides DSM 2048]
          Length = 436

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILRQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S+              K     F      +    + +   ++    +++    +  
Sbjct: 256 SRKMSVLISQLLLLARVDQEKHNTFQFECINMSELTEIVVEELSLMVQEASINITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVNMQLFRDETNIIGKVSDNGIGISEQHIA 375

Query: 164 --FTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +   T     +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNNGNTGLGLSMVKWIIELHGGEITVESELGEGSTFTFKLP 431


>gi|224824650|ref|ZP_03697757.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Lutiella nitroferrum 2002]
 gi|224603143|gb|EEG09319.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Lutiella nitroferrum 2002]
          Length = 349

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 67/232 (28%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSA 60
           A      L       L+   + H+I +P+G I  + +LL+    E + + +   +    A
Sbjct: 118 ANEERLLLQQQANRELI-RNLAHEIKNPLGGIRGAAQLLEHELGERDDLKEYTEVIKEEA 176

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           +     +           +  ++    L  +  ++         +   +      L  ++
Sbjct: 177 LRLQSLVDRLLAPHRRHVSSEINIHEVLERVRSIVLAEYPQGLIIWRDYDISLPTLVADK 236

Query: 116 AKILLNLFMVAHASLPRG-------------GKVTISVQDSKNENIFSLKINGNLARFPE 162
            +++  +  +   ++                 +VT++ +         +  NG      E
Sbjct: 237 EQLIQVVLNITRNAIQAMKGKGEIILRTRVARQVTLARKRYTLALKLQIIDNGPGI-PEE 295

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    V    +   +         H++   +  E         + +L 
Sbjct: 296 IRDHIFYPLVTGRAEGTGLGLTLAQAFVHQHGGSIEFESRPGC-TCFTVMLP 346


>gi|221639331|ref|YP_002525593.1| sensor protein [Rhodobacter sphaeroides KD131]
 gi|221160112|gb|ACM01092.1| Sensor protein [Rhodobacter sphaeroides KD131]
          Length = 346

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 53/237 (22%), Gaps = 32/237 (13%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
               + A+     + + H++ +P+ A+   +E L     D+       + ++   +    
Sbjct: 108 EQEQMGAIRRDFVANVSHELRTPLTALLGFIETLQGAARDDPAARSRFLGIMAREAGRMN 167

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLS 112
             ++ +                              +     A    +Q       I L 
Sbjct: 168 RLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPILLP 227

Query: 113 RERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
            +  ++      +   +               +    +          +   G       
Sbjct: 228 GDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDPEGLARLGPAVRIEVVDRGEGIDAIH 287

Query: 160 FPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P    +    +           +    V  + + ++ R L E            L 
Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLP 344


>gi|170749614|ref|YP_001755874.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656136|gb|ACB25191.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 696

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 73/239 (30%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------M 50
            K +  +L  +  L A+  L   I HD  + +  +  +L+L+      +E         +
Sbjct: 307 RKELELSLQHASKLEAVGRLTGGIAHDFNNMLSIVIGNLDLMKGSLKGNEKALRRVESAI 366

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     +      L F R +     ++D    +  + +++E  +     +         +
Sbjct: 367 EGAHRCAELTSRLLAFSRRSPLQPRALDFTSFIPGLVKLLERTLGEQITISAKLEENLPE 426

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKN----------ENIFSLKINGNL 157
           +  + A+    L      A  ++P GG ++IS++  +               ++   G  
Sbjct: 427 VCVDHAQFEAALINLAVNARDAMPNGGTLSISIRRGEPGVQDGIEPVRCVEITVTDTGTG 486

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   ++ +    +        +    V     ++   +      D        L 
Sbjct: 487 MSPGVLV-RVFEPFFTTKETGKGTGLGLSMVYGFVQQSGGTITVNSNPDQGTRFVITLP 544


>gi|153838024|ref|ZP_01990691.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
 gi|149748558|gb|EDM59417.1| sensor histidine kinase [Vibrio parahaemolyticus AQ3810]
          Length = 806

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      +S +      + + H+I +P+  +  + ++L +  + DE  + +     S 
Sbjct: 339 LEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDEQRKHLSTLYDSG 398

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +     Y+      +   +    IE  I   K V  +                 
Sbjct: 399 DHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQFKVTSLVPV 458

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
                +      ++L NL   A     RG             K   + ++K  G      
Sbjct: 459 GRWYDNDKARLRQVLFNLLNNAVKFTDRGIVEVTLSEQTHYDKTVLVIAIKDTGIGI-SK 517

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           E   +I                   +    V  +A      +  +  ++     + 
Sbjct: 518 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIGTTFTV 573


>gi|94499610|ref|ZP_01306147.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
 gi|94428364|gb|EAT13337.1| multi-sensor hybrid histidine kinase [Oceanobacter sp. RED65]
          Length = 1120

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 25/234 (10%)

Query: 5   ICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                 + +L    ++  + + H+I +P+ A+     LL       +    +R  + ++I
Sbjct: 747 RQAKADAEELADQKSMFLANMSHEIRTPLNALVGLSNLLVANETHVKAQDYMRSINKASI 806

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWT 105
                +     ++      I L +I    ++F+   K +                 +   
Sbjct: 807 HLKSIVDDILDFSKIDADRIDLDEIAVNFDEFLCEIKSLHEQSAREKGLHFEVDNRLDND 866

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +       +I+ NL   A     +G  + ++ +  ++    S+   G      +   
Sbjct: 867 IAIVIDPVRYRQIINNLVSNAIKFTEKGEVIVVTKKQQESLL-LSVCDTGCGLDENQLSN 925

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +              +       LA      +               + 
Sbjct: 926 LFDPFSQADITTTRKYGGTGLGLSICKGLAERMSGSISVSSELGKGSCFYVSIP 979


>gi|94266210|ref|ZP_01289919.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
 gi|93453217|gb|EAT03675.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like:CHASE
           [delta proteobacterium MLMS-1]
          Length = 794

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/240 (8%), Positives = 52/240 (21%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H++ +P+ AI    E+L E   E  +            
Sbjct: 551 ARDAAKAANQAK--SNFLANMSHELRTPLNAIIGYSEILLEEAEEHGLEGCAEDIQRIRE 608

Query: 62  IRLKFMR------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +                                 +  I  ++ +           
Sbjct: 609 AARHLLGLINEVLDFSKTESGRISLTMEECDLDELLAAVVDIIRPLLPERENRLLVEAEE 668

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGG---KVTISVQDSKNENIFSLKINGNLARF 160
             G          +IL NL   A     +G    +    ++D        ++  G     
Sbjct: 669 ELGTIRTDGTRLRQILYNLLSNAAKFTEKGFITLRTRRLMRDGGEWVEIDIQDTGIGI-S 727

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E+  ++          +        +               +            +  L 
Sbjct: 728 EEQQKKLFKPFTQADSSISRRFGGTGLGLAISRYFCRMMGGDIALVSTPGQGSTFTVSLP 787


>gi|83311264|ref|YP_421528.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946105|dbj|BAE50969.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 860

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 62/244 (25%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLI 53
            +        M+ V  L   I HD  + +G I  +LELL+                ++  
Sbjct: 476 TEAALRRSQKMEAVGQLTGGIAHDFNNLLGIITGNLELLERTVQGSESGMKRVQTALRSA 535

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           R  +      L F R      G   + I             ++ K ++V           
Sbjct: 536 RRGADLTRRLLSFSRQDPKAQGKSRTDIADAISGMQEMVQRSLTKVIEVRTQMAADTWHA 595

Query: 114 ERAK-----ILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKI 153
           +  +      LLNL + A  ++P+                 +            + S+  
Sbjct: 596 DINRSEFEDCLLNLCLNARDAMPQGGVLTVEASNVEVDDEMRRADPNLTPGRYVVVSVSD 655

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      E   +I +    +        +        A  +   +              
Sbjct: 656 TGTGI-PKEIVDRIFEPFFTTKERGKGTGLGLAMAYGFARRSGGHIRVYSEPGIGTTFRL 714

Query: 212 LLEK 215
            L K
Sbjct: 715 YLPK 718


>gi|28897843|ref|NP_797448.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361774|ref|ZP_05774799.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
 gi|260877003|ref|ZP_05889358.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|260899074|ref|ZP_05907515.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|28806056|dbj|BAC59332.1| sensor histidine kinase [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089142|gb|EFO38837.1| sensor histidine kinase [Vibrio parahaemolyticus Peru-466]
 gi|308093690|gb|EFO43385.1| sensor histidine kinase [Vibrio parahaemolyticus AN-5034]
 gi|308113233|gb|EFO50773.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030]
          Length = 806

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 64/236 (27%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      +S +      + + H+I +P+  +  + ++L +  + DE  + +     S 
Sbjct: 339 LEQERVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDEQRKHLSTLYDSG 398

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +     Y+      +   +    IE  I   K V  +                 
Sbjct: 399 DHMMTLLNEILDYSKIEQGHVEFSNSPFPIESIIGSIKSVYHTLCAEKGLQFKVTSLVPA 458

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFP 161
                +      ++L NL   A     RG             K   + ++K  G      
Sbjct: 459 GRWYDNDKARLRQVLFNLLNNAVKFTDRGIVEVTLSEQTHYDKTVLVIAIKDTGIGI-SK 517

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           E   +I                   +    V  +A      +  +  ++     + 
Sbjct: 518 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVTVQSQENIGTTFTV 573


>gi|145219838|ref|YP_001130547.1| PAS/PAC sensor hybrid histidine kinase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206002|gb|ABP37045.1| PAS/PAC sensor hybrid histidine kinase [Chlorobium phaeovibrioides
           DSM 265]
          Length = 525

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 63/241 (26%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        M++V  L   I HD  + +  I    E+L +           ++ I  ++ 
Sbjct: 137 EQQLLQSQKMEVVGKLAGGIAHDFNNMLAVILGHAEMLSDGMGPEDERYGNLEAILGATQ 196

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG-------EKIDL 111
                 + +         +  ++   +        +       +                
Sbjct: 197 RLDNLTRQLLAFARSQVVLPKVLDFDESVDGTLGLLRRLIGENIELRWLPGADGGRVKID 256

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI----------------SVQDSKNENIFSLKING 155
             +  +I+ NLF+ A  ++   G +TI                  +        S+   G
Sbjct: 257 PSQIDQIIANLFVNARDAISGSGTITIETRRFTQPEKDVSAGVMERKPGRYLSLSVTDTG 316

Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I +    +        +    V  +  +N   L      +     +  +
Sbjct: 317 KGM-SPEMIHRIFEPFYTTKDIGKGTGLGLSTVYGIVKQNGGFLDVSSEPEKGSRFTVCI 375

Query: 214 E 214
            
Sbjct: 376 P 376


>gi|329849065|ref|ZP_08264093.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
 gi|328844128|gb|EGF93697.1| histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family
           protein [Asticcacaulis biprosthecum C19]
          Length = 595

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 19/221 (8%), Positives = 54/221 (24%), Gaps = 26/221 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           +   + + H++ +P+ AI    +LL    +  + +  ++    S                
Sbjct: 277 SQFLANMSHELRTPLNAILGYAQLLKSSDLSSQQLSAVKTIQHSGEHLLTVITDILDIAK 336

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  +        +    +G     +  +  ++    +        +   +   ++L
Sbjct: 337 VEAGRMELMPGGFDIRACALTVGQMVRVRAEDKGLSFSISIAEDVPQYVVADEKRMRQVL 396

Query: 120 LNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGNVE-- 173
           +NL   A      G         S         F++   G   +  +    I     +  
Sbjct: 397 INLLGNAIKFTAAGEVRLSVTVVSAGEESARLCFAVSDTGVGIQADQL-DSIFRPFEQAG 455

Query: 174 ---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              S      +       +       +  E         + 
Sbjct: 456 NSISKSGGTGLGLSITHQIVKLMGGDIKVESEVGQGSCFTV 496


>gi|320105543|ref|YP_004181133.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319924064|gb|ADV81139.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 508

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 60/230 (26%), Gaps = 17/230 (7%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLS 56
            K+      +  L       + I H+I +P+ AI N L L+   D        + L +  
Sbjct: 262 KKSQEALRQTEKLAVAGRFAASIAHEINNPLEAITNCLYLVMQTDLPDDARGYVDLAQQE 321

Query: 57  SMSAIIRLKFMRLAFGYT------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                         F  +         + +  +  + +       ++   +       + 
Sbjct: 322 LDRVSQITVQTLRFFRGSTRQGATDLRELIDTVVTLLESRLQRAQIEVVREFRTQASVVA 381

Query: 111 LSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              E  +++ NL   A  ++ +           ++    +   + ++   G+        
Sbjct: 382 QGGEIRQVVANLVGNAMDAMTKGGRLILRTADGVNRTTGERGVVLTVADGGSGMDQFTLD 441

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      I    +  +    +  ++   +          V    L 
Sbjct: 442 RIFEPFFSTKGITGTGLGLWISQEIVAKHSGTMRVRSKPGAGTVFRLFLP 491


>gi|304317075|ref|YP_003852220.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778577|gb|ADL69136.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 457

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 69/214 (32%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLKFMRLAFGY 73
           S + H++ +P+  +   +EL+D  G +++ +       L +      I+  + + LA G 
Sbjct: 241 SNVSHELRTPLSVLKGYIELIDRWGKDNKDVLEESISALKKEEQDMEILIERLLMLARGD 300

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID--------LSRERAKILLNLFMV 125
             +++      +I ++IE+ +   + V      E                 +++  +   
Sbjct: 301 NKALEVNKKKINIYELIEELVKDARIVYGEKNIEVFCKRNLEVNADRNLIKELVRIILDN 360

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES--TIDSHD 180
           A       G + I V++        +K +G      +    F +    +           
Sbjct: 361 ALKYTDFDGNIKIFVEEVDKNVAIMIKDDGIGIPQEDIPYIFDRFYRVDKARSKETGGMG 420

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      L+   +  ++      +        + 
Sbjct: 421 LGLSIAKLIVELHGGKIDVNSQLNKGSEFKITIP 454


>gi|299536838|ref|ZP_07050145.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298727662|gb|EFI68230.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 492

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I   L   +    L S I HD+ +P+ +I   +E + +     +E M     +  +
Sbjct: 241 LKESIQLQLQYEENRKELISNISHDLKTPMTSIIGYVEGIKDGVANTEEKMDKYLTTIYT 300

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---- 115
               +  +         +D       +E +       D     S+     D+  +     
Sbjct: 301 KAKDMDVLIDELFLFSKLDLKKIPFQLESINLQQYMHDYVEDASFDFIARDIHLQYLSAG 360

Query: 116 ------------AKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                        ++L NL   +   +     ++ IS+ +   + I  +  NG       
Sbjct: 361 SPLLAMVDRDKLRRVLTNLLSNSEKYMDKPYKQIIISLHERAEDAIIQVTDNGAGIDPVA 420

Query: 161 -PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +                +       +  E    +  +        +   L+K
Sbjct: 421 LPYIFDRFYRAEPSRNSQTGGSGLGLAIAKQIVVEMGGDIWAKSELAKGTSIFISLKK 478


>gi|294011658|ref|YP_003545118.1| putative signal transduction histidine kinase [Sphingobium
           japonicum UT26S]
 gi|292674988|dbj|BAI96506.1| putative signal transduction histidine kinase [Sphingobium
           japonicum UT26S]
          Length = 754

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 24/235 (10%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRL 55
           +I   LS     A   +  RI H+I +P+  I  + E L     E+         +L   
Sbjct: 491 DITQQLSDQRRAAWSDVARRIAHEIKNPLTPIQLAAERLQRRYAEEVTSDKATFTRLTGT 550

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI------ 109
                    + +     +      +     I+ +    + + +        E        
Sbjct: 551 IVRQVGDLRRIVDEFSSFARMPKPVFRRERIDDIARHALFLHEVAHPDIRFEYHSTDGEA 610

Query: 110 ---DLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLAR 159
                 R+  + L N+   A  ++           +  +S+    ++    + +  N   
Sbjct: 611 ELVCDRRQLGQALTNIVKNAVEAIEPKPAADDGDWRGQVSMTVEHDDGNLLIAVQDNGIG 670

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P +  +I++  + +      +    V  +  E+   +  +  D     ++    
Sbjct: 671 LPPERERILEPYMTTRTKGTGLGLAIVKKIVEEHMGEIRFDDADGGGARVTLRFP 725


>gi|238917551|ref|YP_002931068.1| two-component system, OmpR family, sensor kinase [Eubacterium
           eligens ATCC 27750]
 gi|238872911|gb|ACR72621.1| two-component system, OmpR family, sensor kinase [Eubacterium
           eligens ATCC 27750]
          Length = 438

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/213 (9%), Positives = 57/213 (26%), Gaps = 19/213 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA--------IIRLKFMRL 69
             + + H++ +P+ AI    EL++   +  E                       ++   L
Sbjct: 224 FTANVSHELKTPLTAISGYAELIENEMVSHEQGIHFAHEIKRNSERLLSLINDIIRLSEL 283

Query: 70  AFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRERAK-ILLNLF 123
                        L +  +     +  +            +   I  +++  + ++ NL 
Sbjct: 284 DHSEMPRQYENFDLYEFVKDCAESLQVNAQKQGIYFSYRGSACMIRGNKDMIRELIDNLV 343

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDS 178
             A      GG V +       +    +  +G      +    F +    +         
Sbjct: 344 QNAIRYNKEGGHVEVFAGMVDGKPRLEVTDDGIGIPKDQQDRVFERFYRVDKSRSKETGG 403

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             +    V  +   +  R+  +   +   V+  
Sbjct: 404 TGLGLAIVKHIVELHDARIYLDSEINKGTVIRI 436


>gi|229591212|ref|YP_002873331.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
 gi|229363078|emb|CAY50066.1| hybrid sensory histidine kinase in two-component regulatory system
           with UvrY [Pseudomonas fluorescens SBW25]
          Length = 917

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSA 330

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++       +      V    
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ + +     +   S++  G     
Sbjct: 391 PLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLSS 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|261408537|ref|YP_003244778.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
 gi|261285000|gb|ACX66971.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. Y412MC10]
          Length = 485

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/245 (10%), Positives = 72/245 (29%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLI 53
           M + +  ++          + + + + HD+ +P+  +   +E L++      E + +Q +
Sbjct: 237 MRQELEHSIEREWRMEQERSTMFAALAHDLRTPLTIVQGHVEGLEQMNGEPDEGKRLQYL 296

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------- 106
           ++   +     K ++              L  +   IE+F         +          
Sbjct: 297 QVIKRNTTRASKLLQDMNTMAEIEKVSFRLQPLPVDIEEFADEKTGEYAALCRGKNIAFQ 356

Query: 107 -----------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                        +       ++L NL   +    P  G++   ++ ++ + + ++  NG
Sbjct: 357 SKVYDNRTAKTPVMLDPYRIIQVLDNLVSNSLRYTPEAGRILWHIEITEQQVVMAVTDNG 416

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                     Q+                   +  Y   LL   +   ++ E        +
Sbjct: 417 TGFGQQRHLQQVFKPFYQGQVHSSRQKGHSGLGLYIAKLLVQHHGGHIVAENNPLRGATV 476

Query: 210 SALLE 214
              L 
Sbjct: 477 RFTLP 481


>gi|218441193|ref|YP_002379522.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
 gi|218173921|gb|ACK72654.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7424]
          Length = 462

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 54/207 (26%), Gaps = 18/207 (8%)

Query: 23  CHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG------ 72
            H++ +P+  I      +L  L       E +Q +       I     +           
Sbjct: 250 SHELRTPLTVIKGRIGVALSQLRTPEDYQETLQALEQEVDRLIRLANSLLFLTRLEQKNI 309

Query: 73  ---YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                   + L+ L +  Q++ +   +  +  +      +  S     +LLNL   A   
Sbjct: 310 DLSPIDLSELLVILVEQFQLMAEPRKIQLKESIEKDLFILGNSDYLTSLLLNLLDNAVKY 369

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NVESTIDSHDIQFY 184
            P  G+V +  Q    +    +   G      +             +         +   
Sbjct: 370 TPDNGQVWVKTQTDTEKVHIQVINTGKGIAPTDLPHLFKRFYRVESDRSRHTGGTGLGLA 429

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSA 211
               +   +   +  E   +     + 
Sbjct: 430 IAYEIVRLHGGTITVESQLNQATTFTV 456


>gi|163851099|ref|YP_001639142.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163662704|gb|ABY30071.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 695

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 74/239 (30%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            K +  +L  +  L A+  L   I HD  + +  +  +L+L+              +  +
Sbjct: 307 RKELELSLQHASKLEAVGRLTGGIAHDFNNMLSIVIGNLDLVKSSLSGNEKALRRIESAI 366

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     +      L F R +     ++D    +  + +++E  +     +         +
Sbjct: 367 EGAHRCAELTSRLLAFSRRSPLQPRALDFTSFIPGLIKLLERTLGERIAISADLEDGLPE 426

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK----------NENIFSLKINGNL 157
           +  + A+    L      A  ++P GG + I ++  +          +    ++  +G  
Sbjct: 427 VCVDHAQFEAALINLAVNARDAMPDGGTLGIRIKRHEADAQEDSEQVHSVEIAVTDSGTG 486

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P    ++ +    +        +    V     ++   +  +   D        L 
Sbjct: 487 M-SPAVLARVFEPFFTTKEAGKGTGLGLSMVYGFVQQSGGTIAVDSNPDQGTRFVITLP 544


>gi|153005834|ref|YP_001380159.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152029407|gb|ABS27175.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 233

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 58/207 (28%), Gaps = 10/207 (4%)

Query: 17  LLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            L +++ H++ +P+ A+   L+L L          +L  +    A +     R    Y  
Sbjct: 22  QLGAKVAHELKNPLTAVKALLQLGLRNPAEAASHERLALVEREVARMLEILQRYLACYRP 81

Query: 76  SVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
             +               +  +         R+            R   + L NL     
Sbjct: 82  LEELEPTPVALGPLAADTLLALSARAADAGVRLSTRGDATAEADPRRLREALQNLVSNGI 141

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVI 187
            + PRGG+V + V    +     ++  G     P+   ++      +  D   +      
Sbjct: 142 EATPRGGEVVVEVLARADGAEIVVRDTGRGM-APDTLRRLGTPFFSTREDGTGLGVVLAR 200

Query: 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   L  E          A L 
Sbjct: 201 AAIARHGGTLRYESAPGKGTTARATLP 227


>gi|46581461|ref|YP_012269.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|46450883|gb|AAS97529.1| sensory box histidine kinase/response regulator [Desulfovibrio
            vulgaris str. Hildenborough]
 gi|311235114|gb|ADP87968.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris RCH1]
          Length = 1223

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 27/241 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS- 59
            M  +     +  +L +   + I H++ +P+  I    ++         +++       + 
Sbjct: 833  MRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIADVALTTEGNPALLRNYFSMVQNV 892

Query: 60   -------AIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVS---- 103
                       L F RL  G          L          +          +++     
Sbjct: 893  AEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNG 952

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLA 158
                         +IL+NL   A    P+            V   +   +F+++  G   
Sbjct: 953  LPLTLRGDPLRLRQILVNLVGNAVKFTPQGTVHVDVSTGDGVTHDRECLVFTIEDTGPGI 1012

Query: 159  RFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +           DG+         +       L       +  +       V    L
Sbjct: 1013 PHEKLAHIFESFAQADGSYSRQHTGSGLGLAISRHLVELQGGDIGVQSTPGEGSVFWFTL 1072

Query: 214  E 214
             
Sbjct: 1073 P 1073


>gi|327478874|gb|AEA82184.1| signal transduction histidine kinase [Pseudomonas stutzeri DSM
           4166]
          Length = 830

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 64/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----- 55
           + +      ++ +    L S I H++ +P+ AI    +L+     ++   +         
Sbjct: 587 LREATLQAQAASEAKGRLLSGISHELRTPLNAILGFAQLMRMDCDDESQAEAAEYLDEIL 646

Query: 56  --SSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             S     +  + +  +                  L      +       + +++  +  
Sbjct: 647 LASRHLNQLLGEILEWSSLQNEPAQLELQPVNVCELMRECAELVSLDIQQRGLRLDLSLP 706

Query: 108 KID-----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     R   ++LLNL   A       G +++  + S +     ++  G      +
Sbjct: 707 DERLLVLAEPRRLRQVLLNLLSNAMKYNVPEGHISLRAETSPSHVRLLVEDTGLGIDPAQ 766

Query: 163 KFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +          G   S I    I     +  A     ++               L +
Sbjct: 767 QAQVFEPFQRLGRENSMIQGTGIGLSLCLEFARLMNGQMGLHSEPGVGSRFWIELPR 823


>gi|322436443|ref|YP_004218655.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
 gi|321164170|gb|ADW69875.1| PAS/PAC sensor signal transduction histidine kinase [Acidobacterium
           sp. MP5ACTX9]
          Length = 823

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS 56
            ++    + S  L A+  L + I H+I +P+ ++ N + L     +    +E ++     
Sbjct: 584 KRSDEALIQSEKLAAVGRLAASIAHEINNPLESVTNLIYLARTTDDHDTANEFLETADRE 643

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
              A             + S      L   E V+           ++    K   +  R 
Sbjct: 644 LRRAAAITNQTLRFHRQSTSPAEATCLELFESVLSIQQGRIVNSNITLEKRKRAHTPVRC 703

Query: 117 ------KILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                 ++L NL   A  ++           +  I     +   + ++  +G        
Sbjct: 704 FVGEIRQVLNNLVGNAIDAMHPEGGRLLLRSREAIHHPTGRRGLVLTVADSGPGMSSHTF 763

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI--IDDH-NVVLSALLE 214
                       I    +  +    +   +   +         H   V +  L 
Sbjct: 764 ARAFEPFYTTKDIGGTGLGLWISKEIIARHSGIISLRTSQRLGHSGTVFTVFLP 817


>gi|299068143|emb|CBJ39360.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           CMR15]
          Length = 665

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 62/241 (25%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48
           +       + +  L AL  + + I H++  P+ A+    +    LL+             
Sbjct: 417 LRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAAADNLRA 476

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           +  L             F   +      V   + L  +  +       V+  +       
Sbjct: 477 IADLTERMGKITAQLKLFAGRSRRRHADVQVRVALDHVLALLRPRLAEVETALHWRLPEA 536

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKINGN 156
              +  +     ++L+NL   A  ++           D           +    ++ NG 
Sbjct: 537 ACVVRADELKLEQVLINLIGNALDAIAANDLSRPGRIDIDIGPADGAPAQLCIVVRDNGP 596

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    + +    +        +       +A +    L    +       +  L 
Sbjct: 597 GI-AADAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSAANVPGGGAQFTLSLV 655

Query: 215 K 215
           +
Sbjct: 656 R 656


>gi|295090876|emb|CBK76983.1| Signal transduction histidine kinase [Clostridium cf.
           saccharolyticum K10]
          Length = 474

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIH--------NSLELLDEVGIEDEVMQL 52
           M   +  +  +        S + H++ +PI  I            E  D+      ++  
Sbjct: 234 MLARLQASFEAER---QFSSDVSHELRTPIAVIRSQCEFALSGQAEEGDKEEAFHAILTQ 290

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
               +      L   R   G        +    L        +  A +  V ++W   + 
Sbjct: 291 SERMNAIVSQLLLLSRAENGKFIPKREPVDFGTLCSFICEDLEASAGENHVSLTWETGEA 350

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +  +   ++  +      A      GG+V +  +        +++  G   +  +    
Sbjct: 351 QVVGDETLLIRMVTNLVTNAIRYNREGGRVRVVTERKNGSVFLTVQDTGIGIKKEDLEKI 410

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +   + +   +    V  +A  +   +  E +       +  L 
Sbjct: 411 FNRFYRADASRSTEGTGLGLSMVKWIAGIHGGSVRAESVYGVGSAFTVELP 461


>gi|228964357|ref|ZP_04125474.1| hypothetical protein bthur0004_12080 [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228795341|gb|EEM42831.1| hypothetical protein bthur0004_12080 [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 466

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   +   D    +   L
Sbjct: 424 GLGLAIVRQIVHIHGGQWKIKSEKDKGTTVIIKL 457


>gi|229134051|ref|ZP_04262871.1| hypothetical protein bcere0014_29660 [Bacillus cereus BDRD-ST196]
 gi|228649386|gb|EEL05401.1| hypothetical protein bcere0014_29660 [Bacillus cereus BDRD-ST196]
          Length = 436

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILRQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S               K     F      +    + +   ++    +++    +  
Sbjct: 256 SRKMSALISQLLLLARVDQEKHNTFQFECINMSELTEIVVEELSLMVQEASINITTNIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVNMQLFRDETNIIGKVSDNGIGISEQHIV 375

Query: 164 --FTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +   T     +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNNGNTGLGLSMVKWIIELHGGEITVESELGEGSTFTFKLP 431


>gi|220922306|ref|YP_002497608.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219946913|gb|ACL57305.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 489

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 63/219 (28%), Gaps = 19/219 (8%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLEL-------LDEVGIEDEVMQLIRLSSMSAII 62
             L A+  + S + H+I +P+ A+    E        +        V++ I         
Sbjct: 270 ERLAAVGRMASGVAHEIRNPLAAMRLKAENALASRDPIRSRAALTVVLEQIDRMDRLLRD 329

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------VSWTGEKIDLSRERA 116
            L  ++         D    L    ++ E+     +         ++   +      +  
Sbjct: 330 LLSLIQPRPPALAPTDIADVLAASARLHEELAGAKRIRIEIVAPALARADQPCLDEGQIR 389

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           +   NL + A  + P G  V ++   + +    +++  G          ++ +  V    
Sbjct: 390 RAADNLILNAVQNCPEGALVRVTAARAGDRLRIAVEDTGPGV-PDALRARLFEPFVTGRP 448

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDH-NVVLSALLE 214
           D   +    V  +A  +      E             L 
Sbjct: 449 DGTGLGLAIVREIARAHGGEARLE--PGGPGATFELDLP 485


>gi|163815965|ref|ZP_02207335.1| hypothetical protein COPEUT_02145 [Coprococcus eutactus ATCC 27759]
 gi|158448775|gb|EDP25770.1| hypothetical protein COPEUT_02145 [Coprococcus eutactus ATCC 27759]
          Length = 454

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     + S  +     + + H++ +P+ +I    EL++     +  +           
Sbjct: 216 QKQHADIVKSSQMRQEFTANVSHELKTPLTSISGYSELIETGMATEADVHHFATEIHKNS 275

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------------TGE 107
            RL  +         +D       +E+V    IA      ++                  
Sbjct: 276 NRLLTLINDIIRLSELDVSEDTPAMEKVDLAVIARTATDMLAINAEKNNVTLSYSGSHEY 335

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A     + G V +SV    ++    +K  G      E   +I
Sbjct: 336 IYANKMMMEELVYNLTDNAIRYNNKNGSVDVSVNSDGDKVTLRVKDTGIGI-PAEHQERI 394

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +           +     +    V  +   N   L           +S   +K
Sbjct: 395 FERFYRVDKSRSKSTGGTGLGLAIVKHIVARNNAHLDMVSEPGRGTDISVTFDK 448


>gi|153810111|ref|ZP_01962779.1| hypothetical protein RUMOBE_00492 [Ruminococcus obeum ATCC 29174]
 gi|149834289|gb|EDM89369.1| hypothetical protein RUMOBE_00492 [Ruminococcus obeum ATCC 29174]
          Length = 532

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           N    +    L     + + H++ +P+ +I    E++ +  +++E ++       +   R
Sbjct: 297 NETEKVEREQLRREFSANVSHELKTPLTSISGFAEIIQDGLVKEEDIKKFAGRIYNEAQR 356

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGEKI 109
           L  +         +D      + E++    I  D   ++                     
Sbjct: 357 LITLVEDTIKVSQLDEGENPYEWEKLDAYTIVKDVCGRLREVAEKKNVHLYIDGGKTMLT 416

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
            +     +++ NL           G V+I ++D        +K NG      +    F +
Sbjct: 417 TVHPILDEVIYNLCDNGIKYNKEDGTVSIHLRDLGENVEIRVKDNGIGIPGEDQSRVFER 476

Query: 167 IVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +  I    +    V          L           ++    K
Sbjct: 477 FYRVDKSHSKAIGGTGLGLSIVKHGVTFLGGTLKMASEIGKGTEITMTFPK 527


>gi|170738597|ref|YP_001767252.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168192871|gb|ACA14818.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 640

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 73/242 (30%), Gaps = 29/242 (11%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVM 50
            K +   L  +  + AL  L   + HD  + + AI  SLEL             +     
Sbjct: 261 QKQLEARLRQADKMQALGTLAGGVAHDFNNLLTAIMGSLELALPKVAGDARLTRLMTNAA 320

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           Q  +  +      L F R        VD    +  ++ ++   +    +V  +   +   
Sbjct: 321 QAAQRGAALTKRLLSFSRQRDLQARVVDLNGVIRGMDDLLGRSLGGFVQVDHALAPDLWP 380

Query: 111 LSRERAKI---LLNLFMVAHASLPRGGK------------VTISVQDSKNENIFSLKING 155
              +  ++   +LNL +    ++P GG                      +  + ++   G
Sbjct: 381 ARVDPEQLELAILNLCINGRDAMPDGGIVTLSTRNVVVAGSPDPDLPDGDYAVIAIADTG 440

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE  +++ +    +        +    V  L  ++   +  +        +   L
Sbjct: 441 TGI-PPEILSRVFEPFFTTKAQGQGTGLGLAMVFSLLQQSGGTIRIDTEVGRGTRVDLYL 499

Query: 214 EK 215
            +
Sbjct: 500 PR 501


>gi|148559727|ref|YP_001258977.1| sensory box histidine kinase/response regulator [Brucella ovis ATCC
           25840]
 gi|148370984|gb|ABQ60963.1| sensory box histidine kinase/response regulator [Brucella ovis ATCC
           25840]
          Length = 945

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 69/241 (28%), Gaps = 31/241 (12%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
                 S  + A+  L   I HD  + + AI  S +LL             +  I+ ++ 
Sbjct: 556 ENQMAQSQKMQAVGQLAGGIAHDFNNVLTAIIMSSDLLLTNHRASDPSFPDIMNIKQNAN 615

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ L D+   +   +A      +    +           
Sbjct: 616 RAASLVRQLLAFSRRQTLRPEVLDLTDVLADLRMLLARLVGKDIELKIDHGRDLWPVKAD 675

Query: 114 --ERAKILLNLFMVAHASLPRGGKV---------------TISVQDSKNENIFSLKINGN 156
             +  ++ +NL + A  ++P GG++                       +  +F ++  G 
Sbjct: 676 LGQFEQVAVNLAVNARDAMPEGGQITLRTRNIPAADAAKLHYRDLPEADYVVFEVEDTGT 735

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 736 GI-PADVLEKIFEPFFTTKEVGKGTGLGLSMVYGIIKQTGGFIYCDSEVGKGTTFKIFLS 794

Query: 215 K 215
           +
Sbjct: 795 R 795


>gi|222056653|ref|YP_002539015.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221565942|gb|ACM21914.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 636

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 25/235 (10%)

Query: 1   MAKNI-CFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQ 51
           + K +   + S+++L   A + S   HD+  P+  I + L+LL+           D  + 
Sbjct: 398 LRKTMTDLSRSNLELAQFAYVAS---HDLQEPLRMIASYLQLLENKYRGNIDEKADSYIH 454

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWT 105
                +      ++ +      T                    +          V     
Sbjct: 455 YAVDGAKRMQRLIEGLLAYSRITRGAVFSPVNTGKVFSEALANLDASIKESGAAVHGEGL 514

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK 163
                   +  ++  NL   A     R   + ++V   K     +F++K NG      E 
Sbjct: 515 PTVFGDEIQLLQLFQNLIGNAIKYRRRDIPLVVTVSAQKQHGEWLFAVKDNGIGI-EEEH 573

Query: 164 FTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +I                 I       +   +  R+  E +          + 
Sbjct: 574 YQRIFQIFQRLHSRDEYSGTGIGLALCKRIVERHGGRIWVESVFGQGTTFLFTIP 628


>gi|91209467|ref|YP_539453.1| phosphate regulon sensor protein [Escherichia coli UTI89]
 gi|91071041|gb|ABE05922.1| phosphate regulon sensor protein PhoR [Escherichia coli UTI89]
          Length = 431

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|71735028|ref|YP_273217.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555581|gb|AAZ34792.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 694

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 70/230 (30%), Gaps = 25/230 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSS 57
            S+ + A+  L   I HD  + +  +  SL+L+                D  +   + ++
Sbjct: 320 QSLKMEAVGQLTGGIAHDFNNMLTGVIGSLDLIKLRMASGRLEGVERFMDAALISAQRAA 379

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                 L F R       +V     +  +  +++  +     ++   + +   +  +  +
Sbjct: 380 SLTDRLLAFSRRQSLDEKAVSVNNLITALADLLQKTVTEKIIIKFDLSPKDPWVFADANQ 439

Query: 118 ILLNLFM---VAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +   +      A  ++P              +  +        ++  G+     +   ++
Sbjct: 440 LENAVLNLVINARDAMPHGGGLTIATCVEQEAQDEPLRHVCVQVRDTGHGI-PKDMLDKV 498

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +        +    V   A+++  RL  E        +S  L K
Sbjct: 499 TEPFFTTKPIGQGTGLGLSMVYGFANQSNGRLSIESTTGVGTTVSICLPK 548


>gi|46579358|ref|YP_010166.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120603083|ref|YP_967483.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|46448772|gb|AAS95425.1| sensor histidine kinase [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563312|gb|ABM29056.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|311233184|gb|ADP86038.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 810

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 65/227 (28%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLI 53
            + +     S  +  +  L + + H+I +P+G I    ELL +            +++  
Sbjct: 571 RRMLARVNQSERMATVGKLSAGLAHEINNPLGVILCYAELLRQGATAEQQDDLGIILRHT 630

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKI 109
           R +       L F R         D+      + +V     A                  
Sbjct: 631 RQAQKVLRDLLDFARPKAFEGVLTDAAGVARRMAEVFGPQAAHRGGRVQVEAEDGLPPAR 690

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +   +IL NL + A  +     G + I ++         ++ NG      +   ++ 
Sbjct: 691 IGEQALEQILSNLLLNAIDALTGEDGLIRIRLRSHGLNVRIDVEDNGLGV-ETDALQRVF 749

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLP-EIIDDHNVVLSALLE 214
           D    +      +    V  +  +        +  +    V    L 
Sbjct: 750 DPFYTTKETGTGLGLSVVYGIVTDAGGTAEVLQSHELGGAVFRVTLP 796


>gi|16124493|ref|NP_419057.1| sensor histidine kinase [Caulobacter crescentus CB15]
 gi|221233177|ref|YP_002515613.1| two-component sensor histidine kinase chvG [Caulobacter crescentus
           NA1000]
 gi|13421367|gb|AAK22225.1| sensor histidine kinase [Caulobacter crescentus CB15]
 gi|220962349|gb|ACL93705.1| two-component sensor histidine kinase chvG [Caulobacter crescentus
           NA1000]
          Length = 534

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 77/246 (31%), Gaps = 36/246 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           M  ++   + +++      + + H+I +P+ +I +++E LD   E      ++ +++   
Sbjct: 289 MTHSLSERMDAIE---RFAADVAHEIKNPLTSIRSAIETLDLVTEPAARARLLAILQNDV 345

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------- 99
                 +  +          +  +  ++D    L ++  + E+                 
Sbjct: 346 NRLDRLVTDISNASRLDAELSREHPKALDLGRLLTEVVSLYENQWRPGDAPGSVRVSLSL 405

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
              S     +       ++  NL   A +  P  G+V +++  ++   I +++ +G    
Sbjct: 406 ADPSQPAIILGRETPIGQVFRNLIDNARSFSPADGEVRVTLSRTRGGLIAAVEDDGPGM- 464

Query: 160 FPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDH-----NVV 208
            PE    I +    S            +       +   +   +  E   D         
Sbjct: 465 PPENLETIFERFYTSRPKGRAFGGNSGLGLSIARQIVETHGGTVHAENRKDANGAVVGAR 524

Query: 209 LSALLE 214
               L 
Sbjct: 525 FVVELP 530


>gi|75759998|ref|ZP_00740065.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228899979|ref|ZP_04064217.1| hypothetical protein bthur0014_11890 [Bacillus thuringiensis IBL
           4222]
 gi|74492517|gb|EAO55666.1| Two component system histidine kinase [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|228859665|gb|EEN04087.1| hypothetical protein bthur0014_11890 [Bacillus thuringiensis IBL
           4222]
          Length = 466

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 20/214 (9%), Positives = 60/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+  I    E + +       +++V QLI   +      +  +        
Sbjct: 244 ANVSHELRTPLSYIKGYSEAILDGVAKGPQQEKVTQLIHKEAGRMQRLVHDLLDLAQLEG 303

Query: 70  -----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                          +  + D  ++      +     ++     +       ++L N+  
Sbjct: 304 EHFPLKKQPIVFSQLIEDVLDTYEIKFIEKEIHISTNLNPEVIVMIDEDRMQQVLHNVLD 363

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSH 179
            A     + G + I+++   +     +K  G             +    +          
Sbjct: 364 NAIRYTNQNGNIVITLEQIDDYCELKIKDTGIGIDIEHLENLGERFYRVDKARSRQHGGT 423

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +    V  + H +  +   +   D    +   L
Sbjct: 424 GLGLAIVRQIVHIHGGQWKIKSEKDKGTTVIIKL 457


>gi|329765161|ref|ZP_08256743.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
 gi|329138364|gb|EGG42618.1| Signal transduction histidine kinase [Candidatus Nitrosoarchaeum
           limnia SFB1]
          Length = 358

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 67/222 (30%), Gaps = 12/222 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGA------IHNSLELLDEVGIEDEVMQLIRL 55
             +       M ++    SR+ HDI +P+        I +  + L  +       ++   
Sbjct: 132 QSSDLMRTEKMAMIGQFTSRLAHDIRNPLTKLKISHEILSQAQNLSVMDKIKHQQRITDA 191

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                 I    +        ++            +    I     V++      I     
Sbjct: 192 IINITHIIEDVLEFVRMSELNLRENTLKNILNASIDNLDIPSSVNVKIEGDDTTILCDNR 251

Query: 115 R-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           +   + +N+   A  ++   G +TI + ++ +      + +G         +++ +    
Sbjct: 252 KLEAVFMNILKNALEAIKNQGYITIKILNNDSNTEIYFEDSGEGISQV-VQSKMYEPMFT 310

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +      +      ++  ++  +L+ +         S +L K
Sbjct: 311 TKQHGSGLGLAICKMIVEQHGGKLIYKNHP---SAFSVILPK 349


>gi|255009663|ref|ZP_05281789.1| putative two-component system histidne kinase/reponse regulator
           fusion protein [Bacteroides fragilis 3_1_12]
 gi|313147448|ref|ZP_07809641.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
 gi|313136215|gb|EFR53575.1| two-component system sensor histidine kinase [Bacteroides fragilis
           3_1_12]
          Length = 1014

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 60/238 (25%), Gaps = 27/238 (11%)

Query: 2   AKNICFNL--------SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L         S  L +   + + H+I +P+ AI     +L     E+E  + +
Sbjct: 633 RKKMEMELTTAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTDEEEEKREYV 692

Query: 54  RLSSMSAI----------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +   +               K       +  S   L  +    +         + V++ 
Sbjct: 693 NIIENNNTLLLQLISDILDLSKIEAGTLEFQYSNVELNAVMKELESTLQLKIKSEAVKLE 752

Query: 104 W-----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           +                +++++NL   A     +G            E  F +   G   
Sbjct: 753 FVPPADRCLVHLEKNRVSQLIINLVTNAIKFTEKGSIRFGYELR-GKELYFYVADTGCGI 811

Query: 159 RFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E    I    V   S      +       L +     +  E            L 
Sbjct: 812 AKDE-QESIFGRFVKLNSFAQGTGLGLSICQTLVNHMGGHIGVESEKGKGSTFWFTLP 868


>gi|239905602|ref|YP_002952341.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
 gi|239795466|dbj|BAH74455.1| putative sensor histidine kinase [Desulfovibrio magneticus RS-1]
          Length = 585

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/250 (8%), Positives = 57/250 (22%), Gaps = 38/250 (15%)

Query: 3   KNICFNLSS-MDLVALLCSRICHDIISPIGAIHNSLELL-------------------DE 42
                 L     + ++    + H++ +P+ +I   ++L+                    +
Sbjct: 330 SEANVRLQEVDKIKSVFIESVSHELRTPMTSIMGFIKLISKDFWKNFKPFLDQNEKLKKK 389

Query: 43  VGIEDEVMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
                E +Q++          +                          L      I+  +
Sbjct: 390 TERIMENLQIVEFEGERLTRLINDVLDSAKIESGRMKWDDQIFQINDVLWLAVSTIKGQL 449

Query: 95  AVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
            +   V  S       +  +     ++++NL   A      G           N    ++
Sbjct: 450 PIGVDVLYSNDNSSPWVKADPDRLMQVMMNLLSNAVKFTSNGYVSVSYESSLSNILTVTV 509

Query: 152 KINGNLARFPE---KFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           K  G      +    F +        + ES      +       +      ++  E    
Sbjct: 510 KDTGVGIPDGDLEKVFDRFHQVQQDNDNESKPKGTGLGLSICKQVVDHYGGKIWVESELG 569

Query: 205 HNVVLSALLE 214
                     
Sbjct: 570 KGSFFKFTFP 579


>gi|238789735|ref|ZP_04633517.1| Aerobic respiration control sensor protein arcB [Yersinia
           frederiksenii ATCC 33641]
 gi|238722094|gb|EEQ13752.1| Aerobic respiration control sensor protein arcB [Yersinia
           frederiksenii ATCC 33641]
          Length = 778

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 60/217 (27%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKIITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A     +G  V    ++  +  IF ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGKIVVRVRREGSDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSTQGAGSCFTLTIK 504


>gi|229524725|ref|ZP_04414130.1| nitrogen regulation protein NR(II) [Vibrio cholerae bv. albensis
           VL426]
 gi|229338306|gb|EEO03323.1| nitrogen regulation protein NR(II) [Vibrio cholerae bv. albensis
           VL426]
          Length = 356

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +  +  +M+  ++    A
Sbjct: 121 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLERMLPDPALMEYTQIIIEQA 179

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E     +   +  +     ++  + 
Sbjct: 180 DRLRGLVDRLLGPQRPGEKKWENLHLILEKVRQLVELEAGANLVFERDYDPSLPNILMDT 239

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 240 DQIEQALLNIVSNAAQILANQTHGVITLRTRTVHQANIHGQRHKLVASIEIIDNGPGI-P 298

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE    +    V        +       L  +++ ++  +       V +  L 
Sbjct: 299 PELQDTLFYPMVSGREGGTGLGLSISQNLIDQHQGKIEVQSWPGR-TVFTIYLP 351


>gi|323340669|ref|ZP_08080921.1| sensor histidine kinase [Lactobacillus ruminis ATCC 25644]
 gi|323091792|gb|EFZ34412.1| sensor histidine kinase [Lactobacillus ruminis ATCC 25644]
          Length = 505

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/214 (11%), Positives = 59/214 (27%), Gaps = 21/214 (9%)

Query: 22  ICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFM--------- 67
           + H++ +P+  I   LE+L     D+  + D  ++            ++ M         
Sbjct: 276 VSHELRTPVAIIQGHLEMLNRWGKDDPKVLDNSIKASLQEINRMKSLVQEMLDLSRAEQV 335

Query: 68  --RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             + A   T   +  + +    ++I           +    +         +IL+ L   
Sbjct: 336 EIQFANEVTDVKEVGMLVYSNFKMIHPEFTFVMDCDLKEATKVQIYRNHLEQILIILMDN 395

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHD 180
           A        +V +S+  +       ++  G           F +    +         + 
Sbjct: 396 AVKYSTNRPEVHMSLAKTSRYAQIVVQDFGEGISQENASKIFDRFYRVDKARSRDKGGNG 455

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L      ++  E +     V    L 
Sbjct: 456 LGLAIAHRLIEGYHGKMTVESVLGQGSVFRISLP 489


>gi|149376129|ref|ZP_01893894.1| Na+/proline symporter [Marinobacter algicola DG893]
 gi|149359534|gb|EDM47993.1| Na+/proline symporter [Marinobacter algicola DG893]
          Length = 986

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 70/232 (30%), Gaps = 23/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + S  L ++  L + + H+I +P+  I +  + L     + +++            
Sbjct: 740 EDELMHSERLASVGRLAAGVAHEIGNPVTGISSLAQNLKLETDDPDILSTADQIQQQTRR 799

Query: 63  RLKFMRLAFGYTG-----------SVDSLIGLGDIEQ---VIEDFIAVDKRVQVSWTGEK 108
               ++    +              VD    + +      + +  + +  R +       
Sbjct: 800 ISTILQSLMNFARTGNHAHANRYEPVDIKRCVDESINLLSLSDKGMGIHYRNECPADLTI 859

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +   +   ++ +NL   A  + P GG+V IS        I  +  +G+     +    I 
Sbjct: 860 LGDEQRLVQVFINLLANARDASPIGGEVRISGNRDGYSAIIEVTDDGSGIPKDQL-DHIF 918

Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLE 214
           +    +        +    V  +  E+   +  +   D        +   L 
Sbjct: 919 EPFYTTKAPNKGTGLGLSLVYSIIEEHYGNIQVDSPADSGTRRGTCVRMRLP 970


>gi|170741718|ref|YP_001770373.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195992|gb|ACA17939.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 984

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 18/226 (7%), Positives = 57/226 (25%), Gaps = 28/226 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLIRLSSMSAIIRLKFMR 68
           +   + + H++ +P+ A+    E+L E   +        ++ ++   +     +    + 
Sbjct: 487 SQFLANMSHELRTPLSAVIGYAEMLQEEMEDLGASALLPDMRKIEANARHLLGLINDVLD 546

Query: 69  LAFGYTGSVDSLIGLGDIE--------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
           ++      ++      D+          V       D  + +           +  K+  
Sbjct: 547 ISKIEAERMEVYAEDFDVAATLQDVGATVGSLIAKKDNALVLDLAEGLGRAHTDVTKLRQ 606

Query: 121 NLFMVAHASLPRGGKVTI------SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
            L  +   +        I        +D ++   F +   G      E+  ++ +     
Sbjct: 607 CLINLLSNAAKFTEGGRIVLSAERLRRDGRDRLRFRVADTGIGM-SAEQQARLFERFTQA 665

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +               +  E         +  L 
Sbjct: 666 DASTTRRFGGTGLGLAITRAFVEMLGGAIAVESRAGEGTTFTIELP 711


>gi|126657352|ref|ZP_01728511.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
 gi|126621339|gb|EAZ92051.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
          Length = 764

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 56/222 (25%), Gaps = 28/222 (12%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLKFMRLAFGYT 74
            + H++ +P+  I      L     E   +      + ++    S    L  +     Y+
Sbjct: 395 NMSHELRTPLTCIIGLSGTLLHWSQESSNLPIDKQKKYLQTIQNSGKHLLDMINEILEYS 454

Query: 75  GSVDSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRERAK 117
                   L              I++V ++       +++                   +
Sbjct: 455 NLQSGKYVLAVREFSLMKVAKNVIQRVSDEAEHRRINLELDLQINAQQDSFYADPERVQQ 514

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES 174
           IL +L   A       G VT+ +    N+    ++  G   +  +    F          
Sbjct: 515 ILYHLLNNALKFTSENGTVTLRIWRENNQVSLEVEDTGIGIKEEQIPLLFESFQQLENSR 574

Query: 175 T--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       L   +   +  E I +        L 
Sbjct: 575 RRMYGGTGLGLALTKQLVELHGGTIEVESIINQGSTFIVRLP 616


>gi|156743113|ref|YP_001433242.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234441|gb|ABU59224.1| multi-sensor signal transduction histidine kinase [Roseiflexus
           castenholzii DSM 13941]
          Length = 911

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 64/251 (25%), Gaps = 40/251 (15%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
           ++    + S  L       + H++ +P+ +I    +LL           + E + +I+ +
Sbjct: 660 RDRTREVESDRLKTEFIGTVSHELRTPMTSIKGFTQLLAMGGLGPLNETQKEFLGIIQSN 719

Query: 57  SMSAIIRLKFMRLAFGY---------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-- 105
           +   I  +  +                    +      +  +        + + +S    
Sbjct: 720 AERMIAIINDLLDITKIETGSVELEIRPLHVAETLSTVMLDLQPKIQDRQQHLSLSIPAG 779

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIF 149
                  +R   +IL N+   A    PR                                
Sbjct: 780 LPLVRADARRFNQILFNIVSNAVKYTPRGGSITVEAREVTADAVPDEERDGLRPGRYVQI 839

Query: 150 SLKINGNLARFPEKFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIID 203
            ++  G      +   +I +    +            +    V  L      R+  E   
Sbjct: 840 DVRDTGVGIAPEDLP-RIWERFYRTENPLKVEAGGTGLGLSLVKPLIRLLGGRIWVESCI 898

Query: 204 DHNVVLSALLE 214
           +   V S ++ 
Sbjct: 899 NEGSVFSFVIP 909


>gi|126462327|ref|YP_001043441.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332558349|ref|ZP_08412671.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides WS8N]
 gi|126103991|gb|ABN76669.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides ATCC 17029]
 gi|332276061|gb|EGJ21376.1| PAS/PAC sensor signal transduction histidine kinase [Rhodobacter
           sphaeroides WS8N]
          Length = 346

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 53/237 (22%), Gaps = 32/237 (13%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
               + A+     + + H++ +P+ A+   +E L     D+       + ++   +    
Sbjct: 108 EQEQMGAIRRDFVANVSHELRTPLTALLGFIETLQGAARDDPAARSRFLGIMAREAGRMN 167

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLS 112
             ++ +                              +     A    +Q       I L 
Sbjct: 168 RLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPILLP 227

Query: 113 RERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
            +  ++      +   +               +    +          +   G       
Sbjct: 228 GDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDPEGLARLGPAVRIEVVDRGEGIDAIH 287

Query: 160 FPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P    +    +           +    V  + + ++ R L E            L 
Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLP 344


>gi|331017766|gb|EGH97822.1| sensor histidine kinase [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
          Length = 355

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIH---------NSLELLDEVGIEDEVMQL 52
           A++    ++ ++ +  L + I H++  P+ AI           + E ++       V ++
Sbjct: 117 ARSQLAQIARVNQLGELAASIAHEVNQPLSAIVISGNACQRWLAAEPVNLEKARQAVERM 176

Query: 53  IRLSSM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105
           I  ++             K       +    D++  +  +     D   V   V+V    
Sbjct: 177 IGDANRAGDIIVRVRALAKRSSTYKEWISVADTVAEIVALAHSEIDAQGVALTVEVPEGL 236

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARF 160
              +    +  ++LLNL +    ++ +                  +  F+++ NG     
Sbjct: 237 PPLLADRVQIQQVLLNLMLNGVDAMSKVETDQAQLEIRVDWREGGDIGFAVRDNGIGV-Q 295

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ D    +  +   I       +   +  R+               L 
Sbjct: 296 ADNTDRLFDAFYTTKQEGMGIGLAISRSIIEAHGGRIWVTPNPSIGATFHFTLP 349


>gi|327482684|gb|AEA85994.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
          Length = 854

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 55/236 (23%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           M       +  M       S + H++ +P+ +I  +L L+             +++++  
Sbjct: 484 MDLTERKRIEQMK--NDFVSTVSHELRTPLTSISGALGLIVGGALGKAPPSMQQMLEIAY 541

Query: 55  LSSMSAIIRLKFMRLAF-----------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +S+     +  +                     + L       Q + D   V   ++ +
Sbjct: 542 SNSLRLGHLINDLLDMEKIAAGKMSFELREHSLGELLKESLASNQALCDQHGVRCSLEHA 601

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L N    A    P GG + +           S+   G       +
Sbjct: 602 TDVRVWVDGMRLQQVLGNFLSNAFKFTPAGGHIRVHSSLRGQRVRISVTDQGPGIPEAFR 661

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                 +       L       +  +            L 
Sbjct: 662 SRVFEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCEPGQGTTFWCELP 717


>gi|260777379|ref|ZP_05886273.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607045|gb|EEX33319.1| multi-sensor hybrid histidine kinase [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1103

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 66/244 (27%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       L++ +  ++  + + H+I +P+  +   L LL E  +  E   ++     SA
Sbjct: 425 LRHESEIALAASEAKSMFLANMSHEIRTPMNGVVGMLSLLSESELNGEQKSMVTTIKDSA 484

Query: 61  IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWT--- 105
           +  L  +                 +  V+    +      +          + +++    
Sbjct: 485 LTLLHIINDILDFSKIEAGQMSLESVPVELQKLIERTLDVLCLQANNKGIELYLTYDASL 544

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKINGN 156
               +  S   +++LLNL   A                  T++  D        ++ NG 
Sbjct: 545 PKVIMSDSVRLSQVLLNLVGNAVKFTDSTDEMKGKVWVSATLNQHDIAPYVEIIIEDNGI 604

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E+  ++                   +       L       +  +         S
Sbjct: 605 GM-TEEQIEKLFKAFSQADTSTTRLYGGTGLGLSITRSLLEMMGGDIHVDSRFGVGSRFS 663

Query: 211 ALLE 214
             L 
Sbjct: 664 VELP 667


>gi|260842598|ref|YP_003220376.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O103:H2 str. 12009]
 gi|257757745|dbj|BAI29242.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O103:H2 str. 12009]
          Length = 431

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|224585125|ref|YP_002638924.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469653|gb|ACN47483.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 788

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 298 STISHELRTPLNGIVGLSRILLDTNLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 357

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 358 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 417

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 418 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 477

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 478 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 512


>gi|215485481|ref|YP_002327912.1| phosphate regulon sensor protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312964579|ref|ZP_07778835.1| phosphate regulon sensor kinase PhoR [Escherichia coli 2362-75]
 gi|215263553|emb|CAS07883.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli O127:H6 str. E2348/69]
 gi|312290813|gb|EFR18690.1| phosphate regulon sensor kinase PhoR [Escherichia coli 2362-75]
          Length = 431

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 69/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
           + + H++ +P+  +   LE++DE  +E  V +    +      R++ +            
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 71  ---FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG--EKIDLSRERAKILLNLFMV 125
                    VD  + L  +E+  +      + V        +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTVTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|109391496|gb|ABG33876.1| Yen1 [Yersinia sp. MH-1]
          Length = 1522

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 58/241 (24%), Gaps = 31/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           A+      +      L  + + H++ +P+ AI   L LL   G++ +       S     
Sbjct: 760 AREAAEKANKAKSAFL--ANMSHELRTPMNAILGMLTLLRRTGLDRKQADYAVKSEAATR 817

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWT 105
                    L F ++  G          +  +           +    + V   +  S  
Sbjct: 818 TLLRLLNDILDFSKIESGKMELECIPFDIHIMLRDLAVILSSYLKVKKVEVLFDIDPSLP 877

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
                 S    +IL NL   A               I+    +    F ++  G     P
Sbjct: 878 QFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVIAQDSHQVTLHFGVRDTGIGI-AP 936

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALL 213
           E    I  G                +               L  E       +   +  L
Sbjct: 937 ENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLTLESQLGQGSLFHFTITL 996

Query: 214 E 214
            
Sbjct: 997 P 997


>gi|194015646|ref|ZP_03054262.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
 gi|194013050|gb|EDW22616.1| sensor histidine kinase [Bacillus pumilus ATCC 7061]
          Length = 471

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 20/212 (9%), Positives = 61/212 (28%), Gaps = 17/212 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKFMRL--------- 69
           + + H++ +P+  +    E ++E    + + M +I+  +      +  +           
Sbjct: 249 ANVSHELRTPLSYMKGYAEGIEEGIIDQKKGMHIIQDEAARLSRLVNDLLDLAQLEGDSY 308

Query: 70  --AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
                       +  + D    I +  ++  +  +         S    +++ NL   A 
Sbjct: 309 PLTMEPIVFAQLIHDVLDQMAFIANQKSIYLKRTLDEDCIVYGDSDRLQQVVRNLLDNAI 368

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIV--DGNVESTIDSHDIQ 182
              P G  V+I +   +++    +   GN     +      +    +           + 
Sbjct: 369 HYTPSGKSVSIELLVHQHKAELRVTDEGNGIPKEDLPHVSERFYRVNKARTRKDGGSGLG 428

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  +  ++      +    +       L 
Sbjct: 429 LAIVYQIMKKHHGTFDIQSEPGYGTTAIIQLP 460


>gi|157150574|ref|YP_001450467.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
 gi|157075368|gb|ABV10051.1| histidine kinase [Streptococcus gordonii str. Challis substr. CH1]
          Length = 344

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 79/236 (33%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +       S    +++ +++ HDI +PI +I  ++E + +       +   +  I   
Sbjct: 106 LQETFASLDESEQEKSMMIAQLSHDIKTPITSIQATVEGILDGVIKEEEQVHYLTTIGRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +      ++ + +                       LI      Q++ +    D  +QVS
Sbjct: 166 TERLNKLVEELDVLTLNAQPRTDSDNEAEIIFLDQLLIEAMSEFQLLIEQEERDIYIQVS 225

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               K+    ++ ++IL+NL   A      G KV +  Q ++ +   S+K  G      +
Sbjct: 226 PESAKMKSHYDKLSRILVNLLNNAFKYSDPGTKVEVVAQLTEQDLTISVKDEGQGIAPED 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +       LAH+    +  E         +  L
Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIAQELAHQLGGEITVESQYGLGSTFTVRL 341


>gi|149177489|ref|ZP_01856092.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
 gi|148843639|gb|EDL57999.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
           8797]
          Length = 844

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 65/244 (26%), Gaps = 34/244 (13%)

Query: 1   MAKNICFNLSSMDL----------VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
           +A+     + +  L           +   + + H+I +P+ A+    +LL     + E +
Sbjct: 445 LARRASIAIDNARLYKIGQQASAAKSEFVANMSHEIRTPMTAVLGYADLLAGSENDPEKL 504

Query: 51  QLIRLSSMSAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
           + +R+   +    L                M     Y  + + +  +  +  +      +
Sbjct: 505 KHLRMIQKNGSFLLDIINDILDLSKIEAGKMECVTEYFAANELIADVYSMMHIRAAEKKL 564

Query: 97  DKRVQV--SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD---SKNENIFSL 151
           D  V+   +   +     +   +IL+NL   A      G    +   D         F +
Sbjct: 565 DFSVEYATTIPSQIESDPKRLRQILVNLIGNAVKFTSEGSIRLVISYDASGEPPAIQFEV 624

Query: 152 KINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G      +      + +              +       LA      +         
Sbjct: 625 IDTGIGITDAQLSQLFQEFSQGDTSVTRAFGGTGLGLAISARLARMLGGSIEVHSKSGSG 684

Query: 207 VVLS 210
              +
Sbjct: 685 TTFT 688


>gi|117923740|ref|YP_864357.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607496|gb|ABK42951.1| multi-sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 893

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 59/242 (24%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + + +       +  +       + I H+I +P+ AI    E+L +  +  E      +S
Sbjct: 360 LERRLRTTTERAESASRAKSDFLAVISHEIRTPLNAIIGMGEVLLDDPLTTEQKHYAMVS 419

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRV 100
             +A                            D +  +  + +V               +
Sbjct: 420 QQAAHTLLDLINDVLDLSKIEAGEFQLEHAPYDLVGLIHSVVEVNTITANQQGLPIECNL 479

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNL 157
             +         R   ++L NL   A     +     +         +    S+K  G  
Sbjct: 480 PDTLPTLMHGDLRRVRQVLFNLLGNAIKFTEQGLIRVETERLETPVASWIRISVKDTGIG 539

Query: 158 ARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               ++          DG++        +       L      ++  +            
Sbjct: 540 IAQEKQSLIFDAFTQSDGSITRRYGGSGLGLTISKRLVEMMGGKIGVDSQLGKGSHFFFT 599

Query: 213 LE 214
           L 
Sbjct: 600 LP 601


>gi|28872654|ref|NP_795273.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28855910|gb|AAO58968.1| sensor histidine kinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 355

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIH---------NSLELLDEVGIEDEVMQL 52
           A++    ++ ++ +  L + I H++  P+ AI           + E ++       V ++
Sbjct: 117 ARSQLAQIARVNQLGELAASIAHEVNQPLSAIVISGNACQRWLAAEPVNLEKARQAVERM 176

Query: 53  IRLSSM------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-SWT 105
           I  ++             K       +    D++  +  +     D   V   V+V    
Sbjct: 177 IGDANRAGDIIVRVRALAKRSSTYKEWISVADTVAEIVALAHSEIDAQGVALTVEVPEGL 236

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARF 160
              +    +  ++LLNL +    ++ +                  +  F+++ NG     
Sbjct: 237 PPLLADRVQIQQVLLNLMLNGVDAMSKVETDQAQLEIRVDWREGGDIGFAVRDNGIGV-Q 295

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   ++ D    +  +   I       +   +  R+               L 
Sbjct: 296 ADNTDRLFDAFYTTKQEGMGIGLAISRSIIEAHGGRIWVTPNPSIGATFHFTLP 349


>gi|62181836|ref|YP_218253.1| aerobic respiration control sensor protein ArcB [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129469|gb|AAX67172.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322716325|gb|EFZ07896.1| aerobic respiration control sensor protein [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 778

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTNLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|75906835|ref|YP_321131.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75700560|gb|ABA20236.1| GAF sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
          Length = 440

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 73/228 (32%), Gaps = 15/228 (6%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       +    L A+    + I H+I +P+  +   L+   +  +  +  + + L+  
Sbjct: 192 LKATQSKLVEKERLAAIGEFAAMIVHEIRNPLTTMIMGLKYSQKTILSSDAQERLSLAVS 251

Query: 59  SAIIRLKFMRLAFGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSWTGE 107
            A      +     Y       I            L  + Q+ E      + +  S + +
Sbjct: 252 EACRLDNLLSEILLYAKPQVLQICELEVNKFISELLILVRQMPEALSRKIEFIPSSTSVK 311

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLARFPEKFTQ 166
            +    +  ++ +N    A  ++  G  V   V  S  +E   ++   G     PE  ++
Sbjct: 312 ILADKDKLKQLFINTIRNACEAISAGEVVQWEVNISSPDEVCINICNRGEPI-PPEILSK 370

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +      +    V  + H +  +L  E       ++S  L 
Sbjct: 371 LTQPFFSTKPHGTGLGLAIVQRIVHAHYGKLSIESDITKGTIVSVRLP 418


>gi|219667341|ref|YP_002457776.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
 gi|219537601|gb|ACL19340.1| histidine kinase [Desulfitobacterium hafniense DCB-2]
          Length = 560

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 67/249 (26%), Gaps = 37/249 (14%)

Query: 4   NICFNLSSMDLVA-------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM 50
           N    +   +L A                + + H++ +P+ ++    +LL +   ++   
Sbjct: 299 NEDLRIKQDELEAANIKLNEINTYKSEFLAIMSHELRTPLTSVMAFTDLLLQDLPKELKQ 358

Query: 51  QLIR------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI--------EDFIAV 96
           +          S     +    + LA    G ++  +   D+  V+              
Sbjct: 359 ERQNLKYIKANSQNLLKLINNILDLAKIEAGRLELKLEYVDMADVMGAIDSVIAPLAKKK 418

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSL 151
               ++S   E   L  +  K+   +  +   ++         ++ +      N  +  +
Sbjct: 419 GITWEISLDPEVSLLRADPEKLRRVIENLVGNAIKFTPAEGRVEIEVKNGPRDNWLMIRV 478

Query: 152 KINGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
              G      E+            +         +       L   +K  L  E   +  
Sbjct: 479 IDTGIGIPPEEQEEIFERFTQIDSSNSRKYGGTGLGLALAKELVSLHKGELWVESELNKG 538

Query: 207 VVLSALLEK 215
                LL K
Sbjct: 539 STFVVLLPK 547


>gi|163846746|ref|YP_001634790.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222524558|ref|YP_002569029.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
 gi|163668035|gb|ABY34401.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222448437|gb|ACM52703.1| multi-sensor signal transduction histidine kinase [Chloroflexus sp.
           Y-400-fl]
          Length = 742

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/217 (9%), Positives = 58/217 (26%), Gaps = 25/217 (11%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED-------EVMQLIRLSSMSAIIRLKFMRLAFG-YT 74
            H++ SP+ A+ +  +LL     +          + ++       +  +  +        
Sbjct: 504 AHELRSPLAAVRSYADLLLRREQQREGDHRDLHGLTILSQQVAHMLRLVDNLLDVSRLDA 563

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDLSRERAKILLNLFMV 125
           G  D      ++  + +  I   +                      +    ++L NL   
Sbjct: 564 GQFDLQYQQVNLVGLAQQVIDQQRPNAGQRDLLLEAESAELMVTCDAMRIRQVLTNLISN 623

Query: 126 AHASLPRGGKVTISV------QDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--STID 177
           A    P    +++ +       ++    + S+   G      E+               +
Sbjct: 624 AIKYSPPDSVISVRLRSATLLNNNAPAVLISVSDQGPGIPPEEQERVFQRYYRAPGRRAE 683

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  Y    +   +  ++  E  +        LL 
Sbjct: 684 GLGLGLYLSREIVQLHGGQIWIESREGQGSTFMVLLP 720


>gi|320330383|gb|EFW86363.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 694

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 70/230 (30%), Gaps = 25/230 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSS 57
            S+ + A+  L   I HD  + +  +  SL+L+                D  +   + ++
Sbjct: 320 QSLKMEAVGQLTGGIAHDFNNMLTGVIGSLDLIKLRMASGRLEGVERFMDAALISAQRAA 379

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                 L F R       +V     +  +  +++  +     ++   + E   +  +  +
Sbjct: 380 SLTDRLLAFSRRQSLDEKAVSVNNLITALADLLKKTVTEKIIIKFDLSPEDPWVFADANQ 439

Query: 118 ILLNLFM---VAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +   +      A  ++P              +  +        ++  G+     +   ++
Sbjct: 440 LENAVLNLVINARDAMPHGGGLTIATCVEQEAQDEPLRHVCVQVRDTGHGI-PKDMLDKV 498

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +        +    V   A+++  RL  E        +S  L K
Sbjct: 499 TEPFFTTKPIGQGTGLGLSMVYGFANQSNGRLSIESTTGVGTTVSICLPK 548


>gi|316932510|ref|YP_004107492.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
 gi|315600224|gb|ADU42759.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           DX-1]
          Length = 795

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 54/240 (22%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            +N      +  + A+  L   + HD  + +  I ++++ L    + +E  +        
Sbjct: 409 RRNEEALRQAQKMEAVGQLTGGVAHDFNNLLTIIRSAVDFLRRRDLPEERRRRYVDAISD 468

Query: 54  --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               +S      L F R         D    +  I  +I   +     + V         
Sbjct: 469 TADRASKLTGQLLAFARRQPLSPVVFDVAAQIQSIANLIRPLVGSRVEIDVDTEPGPNYA 528

Query: 112 SRERAKILLNLFM---VAHASLP-------------RGGKVTISVQDSKNENIFSLKING 155
             +  +    L         ++                  V             S+  +G
Sbjct: 529 IADVGQFETALVNLAVNGRDAMNGEGRLSIVLRRVDEIPPVRSQPARPGAFVAVSVTDSG 588

Query: 156 NLARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                   +     +        A ++   +            +  L 
Sbjct: 589 SGIAPSNLDVIFEPFFTTKEVGRGTGLGLSQAFGFAKQSGGEISVHSTLGEGSTFTIYLP 648


>gi|297568216|ref|YP_003689560.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924131|gb|ADH84941.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 844

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 61/236 (25%), Gaps = 31/236 (13%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------LIRLSSMSAI 61
             ++ + LL   + HD  + +  I    ++L      ++ +Q          R S+    
Sbjct: 465 QRLESMGLLAGGVAHDFNNKLAVIIGYAQVLQLRLPPEDPLQGEVGEIITAGRRSADLVR 524

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L F R        ++    +    +++   I     +      E   +  +  ++   
Sbjct: 525 QLLAFARKQTINPKLLNINEEIEGTIKMLGRLIGQHITLTWQPGEELWPMYLDPGQLDQI 584

Query: 122 LFMVAHAS--------------------LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           L  +A  +                    +                    ++ NG      
Sbjct: 585 LANLAVNARDAIGNERPGEIVIATKRVAINEEFCRFCPDASPGQYVRLEVRDNGCGM-DD 643

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +I D    +        +    +  +  +NK  +       H       L +
Sbjct: 644 DTLGRIFDPFYTTKEIGKGTGLGLATIYGIVRQNKGFMEVFSSPGHGTTFRIYLPR 699


>gi|197117295|ref|YP_002137722.1| PAS domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197086655|gb|ACH37926.1| sensor histidine kinase response regulator, PAS domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 709

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 63/233 (27%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHN---SLELL-DEVGIEDEVMQLIRLSSM 58
           +        ++ + +L   I HD  + +  I        LL          ++    +S 
Sbjct: 333 QTEILKAQKLESLGILAGGIAHDFNNILTGILGNISFAGLLTASDHPARRPLEHAEKASQ 392

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A      +         +  ++    + +          +VQ      +   +      
Sbjct: 393 RAAELAHQLLTFSRGGEPLKKVVSAAQLVRESLALSLHGSKVQTEVEIPESLHAIEADEG 452

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARFP 161
           + ++   N+ + A  ++P GG + +   +                   S    G    F 
Sbjct: 453 QMSQSFNNVIINACQAMPDGGVLKVKAGNVSLDAQNELGLAAGEYIWISFIDEGCGIPFE 512

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+   I D    +  D   +    V  +   +  ++           L+  L 
Sbjct: 513 EQKM-IFDPYFTTKADGTGLGLASVHSIVSRHAGKVEVISAPGKGTTLTFYLP 564


>gi|152987692|ref|YP_001349930.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
 gi|150962850|gb|ABR84875.1| sensor/response regulator hybrid [Pseudomonas aeruginosa PA7]
          Length = 925

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +       +     SA
Sbjct: 272 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLSTIQKSA 329

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      V    
Sbjct: 330 ESLLGIINEILDFSKIEAGKLVLENLPFNLRDLIQDALTMLAPAAHEKQLELVSLVYRDT 389

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
             +     +   +IL NL   A      G     ++ + ++    +   S++  G     
Sbjct: 390 PVQLQGDPQRLKQILTNLVGNAIKFTQGGTVAVRAMLEDESDDRAQLRISVQDTGIGLSE 449

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            ++       +              +       L  +    +  +           S  L
Sbjct: 450 DDQQALFKAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGAEFWISLSL 509

Query: 214 EK 215
            K
Sbjct: 510 PK 511


>gi|150017913|ref|YP_001310167.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
 gi|149904378|gb|ABR35211.1| PAS/PAC sensor hybrid histidine kinase [Clostridium beijerinckii
           NCIMB 8052]
          Length = 669

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 66/237 (27%), Gaps = 25/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +    +   + I H+I +P+  I   ++LL    + +   + + + S S+
Sbjct: 285 LEKAKEEADKANKAKSEFLANISHEIRTPMNGIIGIIDLLKVTELNNNQKEYLDMLSNSS 344

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
            + L  +      +        L      ++  +                     +    
Sbjct: 345 RLLLGILNTILDISKIESGKFELILKPFNMKKTLDRITKELSIACSKKNLEVFYYIDPYI 404

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
             + I       ++L+N+   A      G  +      +  ++K    FS+K  G   + 
Sbjct: 405 NFDLIGDEIRLNQVLINIINNAIKFTEMGQIMFKVRKLNTTNNKLTLEFSVKDTGIGIKE 464

Query: 161 PEKFTQI-----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             K          D       D   +       +A      +  E I++        
Sbjct: 465 EFKNDIFKKFIQQDMTYTKKYDGTGLGLAISKDIAKLMNGDIWFESIENKGSTFYFT 521


>gi|309790274|ref|ZP_07684842.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
 gi|308227662|gb|EFO81322.1| integral membrane sensor hybrid histidine kinase [Oscillochloris
           trichoides DG6]
          Length = 908

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 56/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK++    S      L  + + H++ +P+ AI    E+L +   E +   L+        
Sbjct: 522 AKHLAEGASRAKSAFL--ANMSHELRTPLNAIIGYSEMLQDDLSESDHTALVPDIQKIHH 579

Query: 62  IRLKFMR------------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +                       ++        +  ++ +             +
Sbjct: 580 AGRHLLGLINDILDISKIEAGKMELHPEQFSLVSLVENVINTVDPLAASNHNRLVLECAA 639

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNL 157
             G       +  +IL+NL   A              ++           +F +   G  
Sbjct: 640 DLGMMAADLAKLRQILVNLLSNACKFTQHGQVTLRVQRLRSETDPQSGTVVFEIADTGIG 699

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               E+  +I          +        +               +  +           
Sbjct: 700 M-SEEQIARIFQPFSQADTSMTRKYGGSGLGLAISHHFCQMMGGTIRVQSELGVGSTFIV 758

Query: 212 LLE 214
            L 
Sbjct: 759 TLP 761


>gi|307296678|ref|ZP_07576497.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
 gi|306877807|gb|EFN09032.1| PAS/PAC sensor signal transduction histidine kinase [Sphingobium
           chlorophenolicum L-1]
          Length = 511

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 61/235 (25%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +     +    L A+  + S + H++  P+ A+   LE + ++  E +          
Sbjct: 267 LKELQAELVHVSRLSAMGTMASTLAHELNQPLAAVALYLETIRDMLDERDDEPFVSLRSV 326

Query: 51  -----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101
                Q    +         F+          +    + +  Q+      +         
Sbjct: 327 MDDAAQETLRAGHIVRRLRDFVARGEVDKSLHELPQVIAEASQLALVGARERGIRSFFAV 386

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLA 158
                  +    +  ++L+NL   A  ++           +          +++  G   
Sbjct: 387 DPAATLVLVDRVQIQQVLVNLMRNAIEAMAECPVRDLKVATRLRPDGLIEVTVEDTGPGI 446

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  Q+      +  D   +       +   +  R+  E  D         L
Sbjct: 447 ADG-IREQLFTAFNSTKADGMGLGLSICRTIIEAHGGRIWMERPDRGGTRFHFTL 500


>gi|299783427|gb|ADJ41425.1| Two-component sensor histidine kinase [Lactobacillus fermentum CECT
           5716]
          Length = 501

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 18/220 (8%), Positives = 58/220 (26%), Gaps = 21/220 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           +     + H++ +P+  I   ++LL+  G +D       +   +  ++    +  + + L
Sbjct: 265 SQFVGDVSHELRTPVAIIQGHMQLLERWGKDDPKQLEESIQAALAETNRMNTLIKEMLDL 324

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------EKIDLSRERAKIL 119
                  V+       +++++       + +   +                      +IL
Sbjct: 325 TRAGQVEVNFRNATTPVKKLVNQVYDNFRMIHPDFHFSLDDDLDEDVLVPVYRDHLEQIL 384

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174
           + L   A        ++ +S+  +       ++  G      +                 
Sbjct: 385 IILCDNAVKYSNERKEIHLSLSRNLRAVEIGVQDFGEGISQEDLHRVFDRFYRVDKARSR 444

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +       L       +  E       +    L 
Sbjct: 445 KKGGNGLGLSIAKRLVEGYHGTVTVESQLGSGSLFRITLP 484


>gi|261251332|ref|ZP_05943906.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
 gi|260938205|gb|EEX94193.1| signal transduction histidine kinase [Vibrio orientalis CIP 102891]
          Length = 639

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 53/240 (22%), Gaps = 28/240 (11%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       ++     +   + + H+I +P+  I     LL+E    D     + + + 
Sbjct: 223 QQLNSAKEKAEVANIKKSEFLANMSHEIRTPMNGIVGIATLLEETSPSDIQKNYLDILTS 282

Query: 59  SAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           S+                      +         +          +  +  +     ++ 
Sbjct: 283 SSSTLLDIINDILDFSKIEAGHFSLSNEPFDICQLLHQQSNEYSVRAAQKQLMFQCNIEP 342

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLAR 159
           +   E         ++L NL   A     +G           +        +K  G    
Sbjct: 343 NLPNEIEGDQVRLKQVLNNLIGNALKFTQQGHIELKVNSLHIEQHPHLYIEIKDTGIGID 402

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +        DG+         +       +       L               + 
Sbjct: 403 KDNLSSIFEKFQQADGSTTRKYGGTGLGLAISKKIVEMMGGELKVTSEVGLGSSFYFTIP 462


>gi|228933206|ref|ZP_04096062.1| hypothetical protein bthur0009_16730 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228826367|gb|EEM72144.1| hypothetical protein bthur0009_16730 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 288

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 46  MAKSLKESVENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHANGEECEQYVS 105

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++ ++E  +           +   +
Sbjct: 106 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSFCI 165

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I V          +K  G     
Sbjct: 166 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKNFGQCIPD 225

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     +    V +  L 
Sbjct: 226 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIAKSIAELHKGDITVRSNEKE-TVFTIALP 283


>gi|229017209|ref|ZP_04174119.1| hypothetical protein bcere0030_17680 [Bacillus cereus AH1273]
 gi|229023386|ref|ZP_04179890.1| hypothetical protein bcere0029_17260 [Bacillus cereus AH1272]
 gi|228737947|gb|EEL88439.1| hypothetical protein bcere0029_17260 [Bacillus cereus AH1272]
 gi|228744089|gb|EEL94181.1| hypothetical protein bcere0030_17680 [Bacillus cereus AH1273]
          Length = 334

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAKN+  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 92  MAKNLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNQLHSNGEECEQYVS 151

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S          +         ++    + +++  IE  +                
Sbjct: 152 ILKRKSYELKNQVNGLLEYCQINYREIELHKSVVNMKAFIEQIMIDFVPQLDDADMSFCI 211

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I V          +   G     
Sbjct: 212 KGDKELHVEIDVALMVRLFENVISNSIMYGKDGKEILIQVSKRDMNVEVEITNFGQCIPK 271

Query: 161 P---EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 F +   G            +       +A  +K  +     D    V + +L 
Sbjct: 272 ENLTYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNDKE-TVFTIVLP 329


>gi|226953340|ref|ZP_03823804.1| two-component sensor [Acinetobacter sp. ATCC 27244]
 gi|294651957|ref|ZP_06729246.1| sensor histidine kinase PhoR [Acinetobacter haemolyticus ATCC
           19194]
 gi|226835878|gb|EEH68261.1| two-component sensor [Acinetobacter sp. ATCC 27244]
 gi|292822189|gb|EFF81103.1| sensor histidine kinase PhoR [Acinetobacter haemolyticus ATCC
           19194]
          Length = 451

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 60/215 (27%), Gaps = 20/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA---------- 70
            I H++ +P+  +   +E   +        +       S   R+  +             
Sbjct: 231 NISHELRTPLTVLSGYIETFTDQDDITPRWKRAFTQMQSQTKRMNALVNDLLLLSNLENN 290

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                       + +  L D  +           + +    + I    E A    NL   
Sbjct: 291 KKVAKNQIIEMANLMNQLFDDARAYNLDYGHTLNLDIDSHCDLIGSDMEIASAFSNLITN 350

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSHD 180
           A    P+GG +TI   +  ++  F+++ NG             +    +           
Sbjct: 351 AIKYTPKGGIITIGWHEDGDQAYFTVQDNGIGINPKHLPRLTERFYRVDSARSRQTGGTG 410

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    V  +  ++   L     ++     +A+  K
Sbjct: 411 LGLAIVKHVLMQHGAHLEISSKENEGSTFTAVFPK 445


>gi|226939100|ref|YP_002794171.1| PhoR [Laribacter hongkongensis HLHK9]
 gi|226714024|gb|ACO73162.1| PhoR [Laribacter hongkongensis HLHK9]
          Length = 449

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 65/219 (29%), Gaps = 24/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFM----- 67
             + + H++ +P+  I   +E L +       I  + + L+   +    + ++ +     
Sbjct: 209 FVANVSHELRTPLTVIGGFVETLSDMDAPGPDILRQFLPLMMEQARRMQVLVEDLLTLSR 268

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                  +       S        + E +      V+  +      +      E    L 
Sbjct: 269 LESGGKSQPFERIGMSELLHTLKVEAEGLSHGRHHVELAICT--PCDLWGAPNELHSALG 326

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVD--GNVEST 175
           NL   A    P GG++ +  Q      +FS++ NG             +          +
Sbjct: 327 NLVSNAVRYTPDGGRIRLLWQMQGGRAVFSVEDNGIGIAREHIPRLTERFYRVDRGRSRS 386

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  +   +  RL  +   +   V SA+  
Sbjct: 387 TGGTGLGLAIVKHILARHSARLEVDSEPERGSVFSAVFP 425


>gi|182415371|ref|YP_001820437.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177842585|gb|ACB76837.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 712

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 71/239 (29%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMS 59
           ++       ++ +  L   + HD+ + +  +  +  LL E      + E++ ++  S+  
Sbjct: 332 ESQFLRAQRLEAIGTLAGGVAHDLNNILAPMLMAAGLLKENITNEHDREMLSMVERSARR 391

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR------ 113
               ++ +             + +  + + +   +      +++   +            
Sbjct: 392 GADIIRQLLTFSRGVEGSRLALQIRHLVREMMGIMRETFPREITLIDQTKGELWPVVADA 451

Query: 114 -ERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNL 157
            +  ++L+NL + A  ++P GG                         +  + S+K  G  
Sbjct: 452 TQLHQVLVNLCVNARDAMPHGGTLAISAVNVEFVAGDAQLPHDAPPGSYVMLSVKDTGVG 511

Query: 158 ARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE   +I D    +        +    V+ +   +   +               L 
Sbjct: 512 M-TPEIMERIFDPFFTTKDLGRGTGLGLSTVLGIVRSHGGFVNVSSEAGKGSDFRVYLP 569


>gi|170739808|ref|YP_001768463.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168194082|gb|ACA16029.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 975

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 62/244 (25%), Gaps = 32/244 (13%)

Query: 2   AKNICFNLSSMDLVALLCSR--------ICHDIISPIGAIHNSLELLDEVGI------ED 47
            K    +L      A   SR        + H++ +P+ AI     L+           + 
Sbjct: 456 RKRAEESLRQAKEAAEDASRAKSSFLANMSHELRTPLNAIIGFTRLVMRRAKEALPTKQF 515

Query: 48  EVMQLIRLSSMSAIIRLK--------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
           E ++ I  SS   +  +                          L    + +E  I  +  
Sbjct: 516 ENLEKILASSEHLLSLINSILDLAKVEAGRMEVKASEFALEPVLDLCLRTVEPLIKSEGV 575

Query: 100 VQV----SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
             V               +  +IL+NL   A      G  VT+ V+ +     F++   G
Sbjct: 576 RLVRDVEDPPTMLRTDEEKLRQILINLLSNAIKFTEAGS-VTLRVRSAGEHVEFAVTDTG 634

Query: 156 NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                        + +        +     +       LA      +  E         +
Sbjct: 635 IGIPQEALSAIFDEFHQVDNSATRSHSGTGLGLAISHRLARLLGGHIDVESRVGQGSTFT 694

Query: 211 ALLE 214
             + 
Sbjct: 695 LSIP 698


>gi|159900038|ref|YP_001546285.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159893077|gb|ABX06157.1| multi-sensor hybrid histidine kinase [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 1022

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 74/231 (32%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSS 57
            +     L +  L AL  L S I HD  + I  I    +LL  +    + E + +I  ++
Sbjct: 646 QEAQDVLLQTERLRALGELSSGIAHDFNNLIAGILGHTQLLLIEAPEEQREGLAVIEQAA 705

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLI------------GLGDIEQVIEDFIAVDKRVQVSWT 105
                 ++ ++         D  +             +    +       +  R++    
Sbjct: 706 RDGRHMVERIQQFTRAQQPEDHEMVDLNTIINDVIKLIRPRWRSRPASTMIQTRIEKGQI 765

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      ++L N+ + A  ++P+GG +TI  +  + + I  +   G      E   
Sbjct: 766 PLIYGSPFALREVLTNVVLNATDAMPKGGILTIRTEQVEADVIMEVSDTGIGM-DEETQI 824

Query: 166 QIVDGNVESTID-SHDIQFYYVILL-AHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +    +  +    +       +    +  R+  +        +S +  
Sbjct: 825 RMWEPFFSTKGEHGTGLGLSMTHAIVVQHHGGRVAVQSEVGTGSTISLVFP 875


>gi|325268223|ref|ZP_08134856.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
 gi|324989365|gb|EGC21315.1| two component system sensor histidine kinase/response regulator
           hybrid [Prevotella multiformis DSM 16608]
          Length = 878

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 59/230 (25%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M ++I    ++  L     + I H++ +P+  I + +E +          + +       
Sbjct: 360 MRRHIEEEATAAKL--QFFTNISHELRTPLTLIADPVEYIIHDPNLSPQQRGMLQIVQRN 417

Query: 61  IIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWT 105
           +  L  +                 +    D    +     + +          ++ V  +
Sbjct: 418 VAVLSRLVSEILDFRKVQNGKMQLHLSDFDLSECMRQWLGLFDTSARKKHITLQLHVPES 477

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  +I  NL   A    P GG +  +     ++    +  NG      +   
Sbjct: 478 IPMRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADKVGIMVSDNGCGIAQDDLPY 537

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           I    V   A  +  +   E  +         + 
Sbjct: 538 VFDRFYQAGNAGHGTGIGLALVKAFAELHHGQATVESEEGKGCTFVVSMP 587


>gi|229090891|ref|ZP_04222119.1| hypothetical protein bcere0021_17120 [Bacillus cereus Rock3-42]
 gi|228692500|gb|EEL46231.1| hypothetical protein bcere0021_17120 [Bacillus cereus Rock3-42]
          Length = 288

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 46  MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHSNGEECEQYVS 105

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++ ++E  +           +   +
Sbjct: 106 ILKRKSYELKNQVDDLLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCI 165

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I V          +K  G     
Sbjct: 166 KGDKELHVEMDVALMVRVFENVISNSIMYGKDGKEILIQVSKRDMNVEIEIKNFGQCIPD 225

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     +    V +  L 
Sbjct: 226 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNEKE-TVFTIALP 283


>gi|218662765|ref|ZP_03518695.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli IE4771]
          Length = 493

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 57/235 (24%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLI 53
           + +       +  + +L  L + I H++  P+ A+  +       L+ E    +   + +
Sbjct: 255 LRQAREGLARASQVASLAELSASIAHEVNQPLAAVVANSHACQRWLMAEPPNMERAQRTV 314

Query: 54  RLSSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                K        T     +    ++             + V 
Sbjct: 315 ERIIRDANSAADVVSRIRALFKQSADRKIQTTLSGIIEEARNLMADEAWRRRARIDLAVD 374

Query: 104 WT-GEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLAR 159
                      +  ++L+NL      ++        V I      N     +   G    
Sbjct: 375 ANLPFIAIDRIQIQQVLINLIRNGIEAMDATADDRIVGIRAHQVGNLLQTEISDCGQGI- 433

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I +    +      +       +   +  RL  E        L   L 
Sbjct: 434 --EFPERIFEPFFTTKETGMGMGLAICRSIVELHGGRLWAEKNKPRGATLVFTLP 486


>gi|145606054|ref|XP_370199.2| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15]
 gi|145013787|gb|EDJ98428.1| hypothetical protein MGG_06696 [Magnaporthe oryzae 70-15]
          Length = 2514

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 65/245 (26%), Gaps = 31/245 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
             +N+     +    ++  + + H++ +P+  +  + ELL +     E +++     +SA 
Sbjct: 1901 RQNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSLSNKEQLEMADSIRVSAD 1960

Query: 62   IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            +                  M+L        + +  +                VQ+     
Sbjct: 1961 LLLTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAVSYSNQEKTRRNNVQIIKEIN 2020

Query: 108  -----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLA 158
                          ++L NL   +     RG     +  DS+        F +K  G   
Sbjct: 2021 LPQLLIYGDPIRLHQVLGNLIGNSLKFTDRGSITIGARVDSETEDSATLSFWVKDTGIGI 2080

Query: 159  RFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAH-ENKIRLLPEIIDDHNVV--LS 210
               +             +         +       L     K ++  +  D        +
Sbjct: 2081 PPAQLAKLFQPFSQADPSTARKYGGSGLGLSICKSLVETMMKGKITLDSADGVGTTAMFT 2140

Query: 211  ALLEK 215
               +K
Sbjct: 2141 VKFDK 2145


>gi|329961691|ref|ZP_08299737.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
 gi|328531563|gb|EGF58400.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
            [Bacteroides fluxus YIT 12057]
          Length = 1338

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 70/230 (30%), Gaps = 25/230 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 805  ALNQSKLR--FFTNISHEFRTPLTLIVAQVETLLQLQNFTPAIYNKVLSIYKNSIQLREL 862

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  + + + E    
Sbjct: 863  ITELLDFRKQEQGHMKIKVSPHNMVHFLYENYLLFLEYASTRQINFKFEKETDSLEVWYD 922

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV 168
             ++  K++ NL   A         +T+S++   N  +  +   G+     E    F +  
Sbjct: 923  QKQMQKVINNLLSNAIKHTEAEDTITLSIKTEGNNAVIRVTDTGSGIDAAEVDKIFDRFY 982

Query: 169  DGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   + D       I       +   +   +  E            L+
Sbjct: 983  QIDQMDSTDAGKTGTGIGLALTKGIVELHHGTIRVESELGKGTSFIVTLQ 1032


>gi|325109469|ref|YP_004270537.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324969737|gb|ADY60515.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 543

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 60/250 (24%), Gaps = 37/250 (14%)

Query: 1   MAKNICFNLSSMD-----------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           MA+ +      +            L +   + + H++ +P+ AI    +L+ +  +E EV
Sbjct: 131 MAREMERANQELQELSRQAEAANQLKSEFLANVSHELRTPLTAILGFTDLVLDHELEPEV 190

Query: 50  MQLIRLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93
            +       +                       +  +    G +   +      +     
Sbjct: 191 ERASLTIKQNGQHLLSILNDILDLSKIEAGHLRIERSDCSPGQIIEEVISLLRVRATAKG 250

Query: 94  IAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFS 150
           I +    +               +I+LNL   A     RG             K +    
Sbjct: 251 IDLRFHSKPDVPARIQSDPLRIRQIMLNLIGNAIKFTERGFVQVNMSTVELEGKPQLRID 310

Query: 151 LKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           +   G     PE+  ++          +        +       L       +      +
Sbjct: 311 VSDTGIGM-TPEQLDRLFQPFVQADASITRQFGGTGLGLTICRRLLELMDGHISASSRPE 369

Query: 205 HNVVLSALLE 214
                  +  
Sbjct: 370 LGSTFQVVFP 379


>gi|310658354|ref|YP_003936075.1| histidine kinase [Clostridium sticklandii DSM 519]
 gi|308825132|emb|CBH21170.1| putative Histidine kinase [Clostridium sticklandii]
          Length = 965

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 65/239 (27%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56
           + K       + +  +   +R+ H+I +P+ AI     LL +          V ++ + S
Sbjct: 310 LKKAKKEADEANEFKSGFMARMSHEIRTPLNAITGMAYLLKKTDISLTQSMYVDRITQAS 369

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQV------SW 104
           +    I    +  +    G V+          +      I  +   ++ +          
Sbjct: 370 NNMLSIINDILDFSKIEAGKVEIEEASFSIDDIIQNVVNIVSYKIEEQEIGFRLSKDSQL 429

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARF 160
               I   +   ++LLN+   A     +G         +K        F++K  G     
Sbjct: 430 PNWFIGDPKRIEQVLLNILNNAAKFTQKGEVALDIRLIAKESDIYHISFNIKDTGIGMTQ 489

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +   ++          +        +    V  L       +      D        L
Sbjct: 490 QQV-EKLFSPFVQGDSSINRRFGGSGLGLSIVKNLVEMMGGSINVFSTPDEGSTFIINL 547


>gi|225570309|ref|ZP_03779334.1| hypothetical protein CLOHYLEM_06405 [Clostridium hylemonae DSM
           15053]
 gi|225160841|gb|EEG73460.1| hypothetical protein CLOHYLEM_06405 [Clostridium hylemonae DSM
           15053]
          Length = 315

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 67/229 (29%), Gaps = 18/229 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +N    L   D VA L S + H + +P+  I    ELL E G+  +  Q     +     
Sbjct: 74  RNQEQALEERDQVASLVSDLSHQLKTPLSNILMYTELLGEEGLSPQEKQEFLRETRMQTE 133

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQ-------------VIEDFIAVDKRVQVSW--TGE 107
           +++++         ++  I    +               +          ++ S      
Sbjct: 134 KMQWLMKTLMKASRLEQGIISFPVNCTGIRKTVAMAVGGIYARASEKKITIETSGLKEYV 193

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-- 165
               S+  A+ L N+   A    P G  +TI +   +      ++  G      E     
Sbjct: 194 LYHNSKWTAEALENILENAVKYSPEGSVITIGLYPMEFYARVDIQDQGLGIEEKEYNDIF 253

Query: 166 -QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +   G      +   +  Y   L+ +  K  +               L
Sbjct: 254 KRFYRGKQVEQQEGSGLGLYLAQLILNREKGYITVTSSPGRGSCFHVYL 302


>gi|152988149|ref|YP_001351034.1| putative two-component sensor [Pseudomonas aeruginosa PA7]
 gi|150963307|gb|ABR85332.1| probable two-component sensor [Pseudomonas aeruginosa PA7]
          Length = 750

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+           +   + + H+I +P+  I    ELL E  + +   Q +R  + +  
Sbjct: 248 AKDQAEAADRAK--SRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGE 305

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSR 113
             L  +     +    ++      ++         V+       +               
Sbjct: 306 GLLAILNEVLHFARLEEAPDAPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 365

Query: 114 ERA--------KILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +          ++L NL   A         R     ++          S+  +G      
Sbjct: 366 DGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARNAGGERLRLSVADDGIGI-PE 424

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L      R+  E            +E
Sbjct: 425 EMHERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESQVGQGSTFWFEIE 483


>gi|39934927|ref|NP_947203.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39648777|emb|CAE27299.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 610

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 67/224 (29%), Gaps = 26/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII--------RLKFM 67
           +   + + H++ +P+ AI    +++ +  +     +  +  +                 +
Sbjct: 357 SRFLATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYAQLINDSGQHLLSVVNGIL 416

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----------RA 116
            ++   +GS + +         + +   +          + +  + E             
Sbjct: 417 DMSKMESGSFEIVPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPEVVGDPRAFK 476

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----- 171
           +ILLNL   A     RGG VT+S        +  +   G      +   ++ D       
Sbjct: 477 QILLNLVSNAIKFTERGGTVTVSAAVEGTRLVLRVTDTGVGIAEEDLK-RLGDPFFQAGK 535

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +    V  L   +   +  +   D    ++  L 
Sbjct: 536 TYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQIDCGTTVTVSLP 579


>gi|154248320|ref|YP_001419278.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Xanthobacter autotrophicus Py2]
 gi|154162405|gb|ABS69621.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Xanthobacter autotrophicus Py2]
          Length = 389

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 62/229 (27%), Gaps = 27/229 (11%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRL 64
           +   V+ L S + H+I +P+  I  + +LL++   +D+        +             
Sbjct: 151 AARSVSALASMLAHEIKNPLSGIRGAAQLLEQSADDDDRALTRLICEEADRIVKLVDRME 210

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAKILLN 121
            F          V+    L  +  +     A   R+   +            +  ++ LN
Sbjct: 211 VFSDERPVEREPVNIHAVLEHVRTLAASGFARHIRIVEEYDPSLPPVLANRDQLIQVFLN 270

Query: 122 LFMVAHASLPRGGKVTIS----------------VQDSKNENIFSLKINGNLARFPEKFT 165
           L   A  ++       I                          F ++ NG      +   
Sbjct: 271 LVKNAAEAIDSDQDGEIQLTTAFRPGVRLTVPGASTRVSLPLEFCVRDNGKGV-PDDLIP 329

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + D  V +      +    V  +  ++   +  +           LL 
Sbjct: 330 HLFDPFVTTKPTGSGLGLALVAKIIGDHGGIVECDSQP-RRTTFRVLLP 377


>gi|134300476|ref|YP_001113972.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
 gi|134053176|gb|ABO51147.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum reducens MI-1]
          Length = 467

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 67/224 (29%), Gaps = 20/224 (8%)

Query: 9   LSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR 63
           L S  +     S I H++ +P+ +I    E L      +     E + +I   +   I  
Sbjct: 238 LKSDKMKNDFISSISHELRTPLTSIKGWGETLFGEELQDREEVKEGLNIICKETDRMIGL 297

Query: 64  LKFMRLAFGYT------------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           ++ +     +              +      +      +                E    
Sbjct: 298 VEELLDFSRFQSGRIKLNLEKININSLLTEVIQQYAIRVRQKKIEMPYQFNDSVPEITGD 357

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                ++ +NL   A    P  GKV IS + S+         +G   R  +   ++ +  
Sbjct: 358 RNRLKQVFINLLDNAVKFTPFCGKVQISTEYSEGTIKIDFVNSGEGIRSEDLP-RVTEKF 416

Query: 172 V--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +      +    V  + + ++  L  E I   N  ++ +L
Sbjct: 417 YKANANRPGSGLGLAIVKEIINLHQGDLHIESIPGQNTRVTVIL 460


>gi|186683181|ref|YP_001866377.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186465633|gb|ACC81434.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 629

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 69/235 (29%), Gaps = 28/235 (11%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR 63
                ++ +  L S I HD+ + +  I  + +LL+          ++ ++  ++      
Sbjct: 256 LRAQRLESIGTLASGIAHDLNNILAPILMTAQLLEAQVHDERSRRLLPILITNTKRGANL 315

Query: 64  LKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116
           +K +             +     + +I+Q+I +       V          +S +     
Sbjct: 316 VKQVLSFTRGLEGDRTILQLKHLIIEIQQIIRETFPKSIEVSTQIPQNLCTVSGDATQLH 375

Query: 117 KILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNLARFP 161
           ++L+NL + A  ++P GG                         +  + ++   G      
Sbjct: 376 QVLMNLCVNARDAMPNGGTLKISAENLFIDENYAKMHIEAKVGHHIVITVTDTGIGI-KS 434

Query: 162 EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I D    +        +    V+ +   +   +               L 
Sbjct: 435 EILDRIFDPFFTTKELAKGTGLGLSTVLGIIKSHGGFINVCSERGKGSQFKVYLP 489


>gi|332702886|ref|ZP_08422974.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553035|gb|EGJ50079.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 519

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 56/226 (24%), Gaps = 32/226 (14%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
           + + H+I +P+  I     LL E  +  E  +++ L   SA   +  +     ++     
Sbjct: 147 ANMSHEIRTPMNGILGMTNLLLETKLSAEQQEILGLVRDSAHALMTVLNDVLDFSKIESG 206

Query: 78  -----DSLIGLGDIEQVIEDFIAVD---------KRVQVSWTGEKIDLSRERAKILLNLF 123
                +  + L DI Q I   +              V                +ILLNL 
Sbjct: 207 RLAMTEEKLDLCDIVQSIYKALRHAAAAKSLQLTFDVAADVPSMIRADRSRIRQILLNLM 266

Query: 124 MVAHASLPRGGKVTISVQDSK-----------NENIFSLKINGNLARFPEKFTQIV---- 168
             A      G                            +   G      +          
Sbjct: 267 GNAIKFTSCGSVRLAVDAPDGVAPNDPNGSGRFPLRLRVIDTGPGIPADKHEQIFESFTQ 326

Query: 169 -DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            DG++        +       LA      +  +         +A +
Sbjct: 327 LDGSLTRRHGGTGLGLTIARELARMMGGNITLQSTPGKGSTFTATI 372


>gi|320324525|gb|EFW80602.1| ATPase-like histidine kinase [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 973

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    I D   +         
Sbjct: 523 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRRALG 582

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 583 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIELNC 642

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I+   S+NE +F +  +G     
Sbjct: 643 TAAQGLVINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGIGIPA 702

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  E   D   V S  L 
Sbjct: 703 EHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTLP 758


>gi|315442612|ref|YP_004075491.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1]
 gi|315260915|gb|ADT97656.1| signal transduction histidine kinase [Mycobacterium sp. Spyr1]
          Length = 509

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIED--EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            H++ +P+  I    EL  +    D   +M  I   S    + ++ + L           
Sbjct: 250 SHELRTPLTTIRGFAELYRQGAARDVEMLMGRIESESRRMGLLVEDLLLLARLDAQRPLE 309

Query: 81  IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----------ERAKILLNLFMVAHAS 129
               D+  +  D +   + +                           ++L NL   A   
Sbjct: 310 HRRVDLLALASDTVHDAQSIAPKRRIRMEVFDGPGTPEVLGDEARLRQVLSNLVANALQH 369

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V  + +  I  +   G      +    F +    +           +   
Sbjct: 370 TPESAGVTVRVGTADDTAIVEVCDEGPGMTGEDAQRVFERFYRADSSRARASGGTGLGLS 429

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L + +  R+            +  L +
Sbjct: 430 IVDSLVYAHGGRVSVTTAPGCGCRFTVRLPR 460


>gi|297621362|ref|YP_003709499.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
 gi|297376663|gb|ADI38493.1| putative sensory histidine kinase [Waddlia chondrophila WSU 86-1044]
          Length = 1005

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 60/244 (24%), Gaps = 32/244 (13%)

Query: 3    KNICFNLSSMDLV-----------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ 51
            K I  +   +++            +   + + H+I +P+  +     LL    ++    +
Sbjct: 758  KQIEQSNQDLEIARKKAEEANIAKSTFLANMSHEIRTPLNGVIGMTSLLLNTPLDKSQEK 817

Query: 52   LIRLSS-------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------- 95
                               L F ++  G          L +I + + + +          
Sbjct: 818  YANRIDLSGKVLLEIINDILDFSKIEAGELNLEKIPCNLEEIVEEVGELMQPKAEEKGLN 877

Query: 96   VDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
            ++           I       ++++NL   A      G          K      +   G
Sbjct: 878  LEISYAHDTPKHLIGDPTRIRQVIMNLTSNAIKFTQEGSVAIKVSNPKKAFIRVEVTDTG 937

Query: 156  NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                  +K       +              +       L    + ++  E I++      
Sbjct: 938  IGIPQEKKMHIFEKFSQADVSTTRKFGGTGLGLAICKQLIEIMEGKIGCESIENKGSTFW 997

Query: 211  ALLE 214
              + 
Sbjct: 998  FEIP 1001


>gi|298291768|ref|YP_003693707.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Starkeya novella DSM 506]
 gi|296928279|gb|ADH89088.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Starkeya novella DSM 506]
          Length = 376

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 27/222 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L S + H+I +P+  I  + +LL+      +  +   +                F     
Sbjct: 146 LASMLAHEIKNPLSGIRGAAQLLELSASDDDRSLTRLITDEADRIVKLVDRMEVFSDERP 205

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRERAKILLNLFMVAHA 128
                V+    L  +  +     A + R+   +            +  ++ LNL   A  
Sbjct: 206 IEREPVNIHAVLDHVRTLASSGFARNIRIVEEYDPSLPPVLANRDQLVQVFLNLVKNAAE 265

Query: 129 SLPRGG----------------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           ++                     V  +         F +K NG      +    + D  V
Sbjct: 266 AIGDAPDGEIQLTTAFRPGVRLMVPGAPARVSLPLEFCVKDNGPGV-PEDLMPHLFDPFV 324

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  +  ++   +  +           L+ 
Sbjct: 325 TTKPTGTGLGLALVAKIVGDHGGIIECDSQP-RRTTFRVLMP 365


>gi|326202278|ref|ZP_08192147.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
 gi|325987396|gb|EGD48223.1| multi-sensor signal transduction histidine kinase [Clostridium
           papyrosolvens DSM 2782]
          Length = 700

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 70/237 (29%), Gaps = 27/237 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE----------DEVMQLIR 54
           +   +    L+    S I H++ +P+  I  ++++L+               ++  ++++
Sbjct: 432 LNETIEYNKLLTEFFSNISHELKTPLNVILGAIQILNLPHDFELPQPFEENLNKYHRVMK 491

Query: 55  LSSMSAIIRLKFMRLAFGY---------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +    +  +  +     +         +      +       V +   +    +     
Sbjct: 492 QNCYRLLRLVNNLIDLSKFDSGFLKLNLSNQNIVSVVEEITLSVADYVESRGLSITFDTD 551

Query: 106 GEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
            E+  ++ +  KI   +      +     + G + IS+ D       S++  G      +
Sbjct: 552 CEEKIIAVDADKIERIILNLLSNSIKFTDKDGSILISISDKGEMVSISVRDTGIGIPKDK 611

Query: 163 ---KFTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +       +   I    V  L   +   +    ++     +   L 
Sbjct: 612 LETIFERFGQVDKTLTRNREGSGIGLSLVKTLVEMHGGVIKISSMEGKGSEVYIELP 668


>gi|239831437|ref|ZP_04679766.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
 gi|239823704|gb|EEQ95272.1| integral membrane sensor signal transduction histidine kinase
           [Ochrobactrum intermedium LMG 3301]
          Length = 610

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 70/241 (29%), Gaps = 31/241 (12%)

Query: 4   NICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSM 58
            +   L S  +    L + + H++ +P+ +I    ++L          ++  +   L   
Sbjct: 317 TLKAELESERIGKGRLLAAVSHELRTPLNSIIGFSDMLSHEMGGKLASEKQREYAGLIHQ 376

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--- 115
           S    L+ +      +        +        +   +   V +    +K      R   
Sbjct: 377 SGHYLLELVNAVLDNSRLETGNYSIDPQTLAFREAAEMCTAVMLPLAEKKGVAFCHRVGN 436

Query: 116 ------------AKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNLAR 159
                        +ILLNL   A      GG VTI     + + +    FS+   G    
Sbjct: 437 GIGELVADRRAVQQILLNLAGNAVKFTQSGGCVTIDAARVMAEGRAMLEFSVSDTGIGI- 495

Query: 160 FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            PE   +I               +   +    V  L   ++  +  +       V++  L
Sbjct: 496 EPEDMQRIGTPFVRANNNYARAQEGSGLGLSVVKGLVELHQGTMQLKSCPGEGTVVTVRL 555

Query: 214 E 214
            
Sbjct: 556 P 556


>gi|256423016|ref|YP_003123669.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256037924|gb|ACU61468.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 736

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/223 (10%), Positives = 58/223 (26%), Gaps = 25/223 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF-------MRL 69
              + + H+I +P+ A+     LL +  + ++  + +     +    L          ++
Sbjct: 234 QFLANMSHEIRTPMNAVLGFTHLLQQQPLNEKSREYVASIQHAGENLLDIINDILDISKI 293

Query: 70  AFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEK--------IDLSRERAKILL 120
             G          L  +   +   F    +   +  +                   ++L+
Sbjct: 294 ESGMMRLEPVSFSLRGMMHSLQLMFQPKAQEKLLDLSVHIDAGVPDILYGDVMRLTQVLV 353

Query: 121 NLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE---KFTQIVDG--N 171
           NL   A    P+G            +S    +F++   G      +    F +      +
Sbjct: 354 NLVNNAIKFTPQGQVTVRVSPVGGNESGIRLLFTIADTGIGISPNKLSTIFDRFNQAEAD 413

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        +    V  L       +  E            L 
Sbjct: 414 ITRKYGGTGLGLTIVKQLVELQHGTISVESELGKGSTFLVQLP 456


>gi|262199699|ref|YP_003270908.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262083046|gb|ACY19015.1| multi-sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 865

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 57/229 (24%), Gaps = 26/229 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMR 68
           S+        + + H++ +P+ AI    ++L D+  + ++    +     S       + 
Sbjct: 408 SATKAKTAFLANMSHELRTPLNAILGYAQMLGDDDNLTEQQRDALTTMRTSGEHLATLLE 467

Query: 69  LAFGYTGSVDSLIGL----------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                +      + L                    +     +     +     G      
Sbjct: 468 DLLDISKIESDRMELAPSEFELTRFLDGLVAPFRMRAESKELHFGYEISGDLPGMVRADE 527

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           R   ++L+NL   A     RG     +         F ++  G      +    I     
Sbjct: 528 RRLRQVLINLLGNAIKFTERGSVTFRANMHDGK-VRFQVEDTGRGI-PGDAMEDIFAPFR 585

Query: 173 E-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLE 214
           +       ++   +       L       +  E +     V      L 
Sbjct: 586 QAGQPEQQVEGTGLGLAISKRLVELMDGSIGVESVLGRGSVFWAEVALP 634


>gi|254507686|ref|ZP_05119818.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
 gi|219549383|gb|EED26376.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio
           parahaemolyticus 16]
          Length = 850

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 59/223 (26%), Gaps = 24/223 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A   +++ H++ +P+  I    +LL     E E ++ + +   S    L  +     ++ 
Sbjct: 476 ADFLAKMSHELRTPLNGILGVSQLLKHSLNEQEALEHVDVLCNSGEHLLAVLNDILDFSK 535

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSWTGEKIDLSRERAKIL 119
                  +   E  + +     +++                 +              +IL
Sbjct: 536 IEQGKFNIETNEFRLIELETTVEKIFMPLCVEKGIELSMRSDIESQMWANSDQVRLNQIL 595

Query: 120 LNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----N 171
            NL   A     +G           + + E    +K  G     P+  T           
Sbjct: 596 FNLVSNAIKFTHQGQVCVELSSIETEQQFELEIVVKDTGIGIEEPQLKTIFEPFIQAEAT 655

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    V  L       +  + +      L A + 
Sbjct: 656 TTREYGGSGLGLAIVHSLVELMNGTISIDSVVGKGTTLVARIP 698


>gi|192290456|ref|YP_001991061.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
 gi|192284205|gb|ACF00586.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris TIE-1]
          Length = 610

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 67/224 (29%), Gaps = 26/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII--------RLKFM 67
           +   + + H++ +P+ AI    +++ +  +     +  +  +                 +
Sbjct: 357 SRFLATMSHELRTPLNAIIGFSDMILQDDVLMLGPERRKEYAQLINDSGQHLLSVVNGIL 416

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-----------RA 116
            ++   +GS + +         + +   +          + +  + E             
Sbjct: 417 DMSKMESGSFEIVPEPFAPRPALLNCCNLLALKARDSGIDLVTRAPENLPEVVGDPRAFK 476

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN----- 171
           +ILLNL   A     RGG VT+S        +  +   G      +   ++ D       
Sbjct: 477 QILLNLVSNAIKFTERGGTVTVSAAVEGTRLVLRVTDTGVGIAEEDLK-RLGDPFFQAGK 535

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +   +    V  L   +   +  +   D    ++  L 
Sbjct: 536 TYQRRHEGTGLGLSIVKSLVRMHGGEIEVQSQIDCGTTVTVSLP 579


>gi|161528807|ref|YP_001582633.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosopumilus
           maritimus SCM1]
 gi|160340108|gb|ABX13195.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosopumilus
           maritimus SCM1]
          Length = 618

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 11/220 (5%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLS 56
            KN+   L  +    A+  L +RI HDI +P+  I +  ELL   +   E++  ++    
Sbjct: 396 QKNLTDRLVRAERFSAIGELSARISHDIRNPLAIIKSEFELLKLQKQIDENDFRRIDTSI 455

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--RVQVSWTGEKIDLSRE 114
           +         +                  + +VI+                   I    +
Sbjct: 456 NRITHQLDDVLEYLRDTPLVYSKFNLTELVTEVIDTLQIPSNVKITIKDDEIFMIGDKDK 515

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
              IL+NL   +  +L  GG + I +  + +E +  ++ +G           I D    S
Sbjct: 516 INIILVNLIFNSIQALEDGGDIDIILSKTNSEIVIQIRDSGIGITIKPI-EAIFDPLTTS 574

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  L  ++   +  +         +  + 
Sbjct: 575 KQKGTGLGLASVKNLVEQHGGMISVKNNP---TTFTIKIP 611


>gi|206564595|ref|YP_002235358.1| two-component regulatory system sensor kinase protein [Burkholderia
           cenocepacia J2315]
 gi|42795457|gb|AAS46238.1| CblT [Burkholderia cenocepacia BC7]
 gi|198040635|emb|CAR56621.1| two-component regulatory system, sensor kinase protein
           [Burkholderia cenocepacia J2315]
          Length = 844

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 62/239 (25%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------ 56
           ++    L S    A+  + I H+I +P+  I +SLELL    +  +       +      
Sbjct: 323 RSRAVTLRSARDKAMFFAFISHEIRTPMHTILSSLELLQRAKLPPKQAGRADAAVAASES 382

Query: 57  ----------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                           R   +     +              +V E  +     +      
Sbjct: 383 LLTLLDDILDYSRLESRNVTLAPEPTHVEPWVQRSADMVRWRVDEKQLGFALELACPPAL 442

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFP 161
             +       +I+LNL + A      G                   +  ++  G     P
Sbjct: 443 CVLIDPVRTRQIVLNLLVNAIKFTSAGSIALRVEYLDGKPDRAGSLVLEVRDTGIGI-PP 501

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+  +I +            +    +       L    K  +      D   V + +L 
Sbjct: 502 ERQRRIFEPYQRVEQAGNRRVAGSGLGLSICRELVDLMKGVITVSSSADKGTVFTVILP 560


>gi|156976578|ref|YP_001447484.1| histidine kinase [Vibrio harveyi ATCC BAA-1116]
 gi|1708886|sp|P54302|LUXQ_VIBHA RecName: Full=Autoinducer 2 sensor kinase/phosphatase luxQ
 gi|459205|gb|AAA20838.1| LuxQ [Vibrio harveyi]
 gi|156528172|gb|ABU73257.1| hypothetical protein VIBHAR_05352 [Vibrio harveyi ATCC BAA-1116]
          Length = 859

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 53/242 (21%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      +       A   +++ H+I +PI  I    +LL +     E    I +   
Sbjct: 467 KQSNIARREAEKSAQARADFLAKMSHEIRTPINGILGVAQLLKDSVDTQEQKNQIDVLCH 526

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102
           S    L  +     ++        +        D +   + +                 +
Sbjct: 527 SGEHLLAVLNDILDFSKIEQGKFNIQKHPFSFTDTMRTLENIYRPICTNKGVELVIENEL 586

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL-----KINGNL 157
               E         +IL NL   A    P G     +  +       S+        G  
Sbjct: 587 DPNVEIFTDQVRLNQILFNLVSNAVKFTPIGSIRLHAELEQFYGAENSVLVVELTDTGIG 646

Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +                       +    V  L    +  +               
Sbjct: 647 IESDKLDQMFEPFVQEESTTTREYGGSGLGLTIVKNLVDMLEGDVQVRSSKGGGTTFVIT 706

Query: 213 LE 214
           L 
Sbjct: 707 LP 708


>gi|116750084|ref|YP_846771.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699148|gb|ABK18336.1| PAS/PAC sensor hybrid histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 559

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
            K +   L     M+ +  L   I HD  + + AI  +  L    L+      E+M+ I 
Sbjct: 178 QKQLEKQLRYAQKMEAIGTLAGGIAHDFNNLLMAIQGNASLILLNLNTGHPHYEMMKSIE 237

Query: 55  LSSMSAIIRLKFM-RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEK 108
               S       +   A      V        + +  E F    K ++V+          
Sbjct: 238 KQVRSGARLTAQLLGYARKGRYEVKPTNLNHLMRETAEAFSRTRKEIRVNLDLAGGLYVV 297

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI--------------SVQDSKNENIFSLKIN 154
                +  ++LLNLF+ A  ++P GG++ +                  S N  +     +
Sbjct: 298 EADQGQIEQVLLNLFVNAADAMPGGGQLHVRTRNTTHEALRGRVYRPRSGNYVLLQCIDS 357

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G          +I +    +        +    V  +   +   +  E         S  
Sbjct: 358 GKGMDKT-TQERIFEPFFTTKEMGRGTGLGLASVYGIVKAHNGYIEVESYQGRGTTFSIY 416

Query: 213 LE 214
           L 
Sbjct: 417 LP 418


>gi|46201997|ref|ZP_00053969.2| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 706

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 63/233 (27%), Gaps = 26/233 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
            +  + + ++  A + S   HD+  P+  I + L LL+        G   E +   R  +
Sbjct: 475 ELERSNAELEQFAYVAS---HDLREPLRMISSYLSLLERRYGPKLEGDGLEFLAFARDGA 531

Query: 58  MSAIIRLKFMRLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 +  +                    +    +  +         +V+++  G  + 
Sbjct: 532 KRMDRLVLDLLDFSRIERKGSPIIAMEAEPVLRQALRHLAPSMDECGAQVEMAEDGGAVR 591

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFT 165
           +  +  +++     +   ++       +       +    E   ++  NG     P+ F 
Sbjct: 592 VMGDPEQVIRLFQNLVGNAVKYRAPGRVPRVSVSWRRDGGEWECTIADNGIGI-DPQYFE 650

Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I                 I       +   +  R+  +            L 
Sbjct: 651 RIFGIFQRLHTPDRYTGTGIGLAICKKIVERHSGRIWVDSTPGQGTAFHFTLP 703


>gi|312970766|ref|ZP_07784947.1| sensor kdpD domain protein [Escherichia coli 1827-70]
 gi|310337415|gb|EFQ02553.1| sensor kdpD domain protein [Escherichia coli 1827-70]
          Length = 566

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 321 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 379

Query: 54  RLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 380 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 439

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 440 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 499

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 500 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 552


>gi|290961736|ref|YP_003492918.1| two-component sensor kinase [Streptomyces scabiei 87.22]
 gi|260651262|emb|CBG74384.1| putative two-component sensor kinase [Streptomyces scabiei 87.22]
          Length = 378

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 52/234 (22%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLS 56
           ++      +    A L + + H++ SP+ ++      L              +++ +   
Sbjct: 137 RDTEARRRTERSHAELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKKLMLETVDAD 196

Query: 57  SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      +  +                 VD    +G   Q          R  +      
Sbjct: 197 ANRVTRLIAELLDISRIDSGRLEVRRQPVDIGAAVGRHIQAYVAAGQPADRFLLRIGQPL 256

Query: 109 IDLSRERA---KILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            DL  +     ++L NL   A                   +        ++   G+    
Sbjct: 257 PDLWADPDKIDQVLSNLLENAVRHGEGTVTIDVTPTASPREGEDTGTSVTVSDEGSGIPE 316

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        S      +  Y V  +   +   +               L 
Sbjct: 317 ESMNRVFTRFWRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAPLGGAEFRFTLP 370


>gi|237800772|ref|ZP_04589233.1| bacteriophytochrome [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331023630|gb|EGI03687.1| bacteriophytochrome [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 621

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 71/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    I D  ++         
Sbjct: 146 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAIGDTTIENRNIRRALG 205

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+   +   +      E   
Sbjct: 206 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACGLLVMLTTEKNIELNC 265

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I      NE +F +  +G     
Sbjct: 266 TSAHGLVIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVAEGNEVLFKVSDDGIGIPK 325

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  +   D   + S  L 
Sbjct: 326 EHLPYIFQRYWSVKEGNPRGNGLGLYICQGIVTAHGGRLWADSSLDSGSIFSFTLP 381


>gi|257067506|ref|YP_003153761.1| signal transduction histidine kinase [Brachybacterium faecium DSM
           4810]
 gi|256558324|gb|ACU84171.1| signal transduction histidine kinase [Brachybacterium faecium DSM
           4810]
          Length = 544

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 69/235 (29%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL-----LCSRICHDIISPIGAIHNSLEL--LDEVGIEDEVMQLI 53
           +A+N    LS +            S + H++ +P+  +  +LE   +++V    E  ++ 
Sbjct: 265 LARNFNRMLSRIQ-AGFAEQRRFMSDVGHELRTPLTIVRGTLETTDVEDVADVQESREIA 323

Query: 54  RLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                R  +     +D           IE     D  ++ +   
Sbjct: 324 LEELERMGRVVGDLSELAASTRPDYVRPRPLDLQAFARSAFARIEHIAERDWLLERTADV 383

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPE 162
                 +  A+ ++ L   A      G ++ ++V         E   S++  G     PE
Sbjct: 384 VADADEQRLAQAVVQLAANAVRYSEEGSRIRMAVDCVPGLDGPEIRVSVQDEGVGI-APE 442

Query: 163 KFTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +I +       +      +    V  +A  +   +  +         + +  
Sbjct: 443 DQQRIFERFARVDGAAGSGTGLGLPIVQAIAEGHGGSVHLDSAPGRGSTFTIVFP 497


>gi|227541889|ref|ZP_03971938.1| two component system sensor kinase [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182332|gb|EEI63304.1| two component system sensor kinase [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 601

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 73/240 (30%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------D 47
           MA+++   +  +     L     S + H++ +P+  +  + +++ +             +
Sbjct: 271 MAESLSKQIYQLQKYGSLQRQFTSDVSHELRTPLTTVRMAADMIYDHSDSLDAYTKRAAE 330

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQV 102
            +++ +          L+  R   G     +  I +  I       +          V +
Sbjct: 331 LMVRELDRFEALLNDLLEISRHDAGVAELSEERIDVRSIINSAWSQVEHLSEEVGAPVTL 390

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARF 160
               E +    +  +I   L  +   ++       +T+++ +S +    +++ +G   + 
Sbjct: 391 EVPDEPVFAHVDARRIERILRNLLANAIDHSESNPITLTLTESDDHFTIAVRDHGVGLKP 450

Query: 161 PE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    F +    +           +        A  +   +  E         +  + K
Sbjct: 451 GQEELVFNRFWRADPSRKRHSGGTGLGLAISREDALLHGGTITAEGEIGEGSTFTVTIPK 510


>gi|227486949|ref|ZP_03917265.1| two component system sensor kinase [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227093023|gb|EEI28335.1| two component system sensor kinase [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 601

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 73/240 (30%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------D 47
           MA+++   +  +     L     S + H++ +P+  +  + +++ +             +
Sbjct: 271 MAESLSKQIYQLQEYGSLQRQFTSDVSHELRTPLTTVRMAADMIYDHSDSLDAYTKRAAE 330

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQV 102
            +++ +          L+  R   G     +  I +  I       +          V +
Sbjct: 331 LMVRELDRFEALLNDLLEISRHDAGVAELSEERIDVRSIINSAWSQVEHLSEEVGAPVTL 390

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARF 160
               E +    +  +I   L  +   ++       +T+++ +S +    +++ +G   + 
Sbjct: 391 EVPDEPVFAHVDARRIERILRNLLANAIDHSESNPITLTLTESDDHFTIAVRDHGVGLKP 450

Query: 161 PE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    F +    +           +        A  +   +  E         +  + K
Sbjct: 451 GQEELVFNRFWRADPSRKRHSGGTGLGLAISREDALLHGGTITAEGEIGEGSTFTVTIPK 510


>gi|224826354|ref|ZP_03699456.1| histidine kinase [Lutiella nitroferrum 2002]
 gi|224601455|gb|EEG07636.1| histidine kinase [Lutiella nitroferrum 2002]
          Length = 388

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 54/220 (24%), Gaps = 16/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSAIIR--- 63
               L ++  + + + H + +P+         L +  + +   +     S          
Sbjct: 168 QQQKLASMGSMAASLAHQLRTPLATAMLYTANLRQPSLGEAERERFIDKSLARLKALEGL 227

Query: 64  -LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117
               +    G    ++ L   G +E+V            V    +       R       
Sbjct: 228 IQNMLSFVRGQVSELELLDVAGLLEEVRAVVQPHYAARAVRLDCDFALGEPVRVAGDRKA 287

Query: 118 ---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
              IL+NL   A      G  V +  +         +   G      E   ++ +    +
Sbjct: 288 LVGILVNLLENALHFSVEGQCVELGARLEGGAVRLCVVDEGPGL-GDELLERVFEPFFTT 346

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +  E    +     +         L 
Sbjct: 347 RSGGTGLGLAIVKKVVEELHGSVCAGNREGGGACFEVRLP 386


>gi|218677031|ref|YP_002395850.1| hypothetical protein VS_II1289 [Vibrio splendidus LGP32]
 gi|218325299|emb|CAV27312.1| Hypothetical protein VS_II1289 [Vibrio splendidus LGP32]
          Length = 657

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 73/232 (31%), Gaps = 18/232 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELL---DEVGIEDEVMQ- 51
           +       + +  L AL  L   I H+I  P+ A+++   S +L          +E ++ 
Sbjct: 423 LRVTQDELIQAGKLAALGQLSVGITHEINQPLTAVNSHVRSAQLWLGKQRPDRAEENLKK 482

Query: 52  ---LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-DKRVQVSWTGE 107
              L+   +        F R + G   +V+    +GD   + E   +    +     +  
Sbjct: 483 IEVLLDKVAAITRHLKAFSRKSDGKIDNVELNKVIGDAIDLFETRQSAVSIQYSPQSSQT 542

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFT 165
               S    ++L+NL   A  ++    +  +S+   ++       +  NG      +   
Sbjct: 543 VRANSIRLEQVLVNLISNALDAIEHREQPELSISTQEHSNTIQILVMDNGLGIPEEDIP- 601

Query: 166 QIVDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + D           +         +  +    +  E ++         L K
Sbjct: 602 HLFDPFYTRKTTGKGLGLGLSIAYNIIKDFGGSIHVESVEHQGTTFIVTLPK 653


>gi|217975278|ref|YP_002360029.1| osmolarity sensor protein [Shewanella baltica OS223]
 gi|217500413|gb|ACK48606.1| histidine kinase [Shewanella baltica OS223]
          Length = 438

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++   +  ++D ++  I     
Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEADQYLKDGIVNDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R     +  +  +  L       E   A +  V ++   E    +    ++
Sbjct: 280 IISQFIAYIRQDQETSRELGQINKLIQDVAQAEANRAGEIEVVLTDCPEAQFQAIAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS Q       FS++ NG      +    F     G++   
Sbjct: 340 LSNLVENAFRYGS--GWIRISSQFDGKRIGFSVEDNGPGIDESQITKLFQPFTQGDIARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   ++ ++      +  +     L 
Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQVTLSNRAEGGLRAQVWLP 436


>gi|120553605|ref|YP_957956.1| multi-sensor signal transduction histidine kinase [Marinobacter
           aquaeolei VT8]
 gi|120323454|gb|ABM17769.1| Two-component sensor kinase CbrA [Marinobacter aquaeolei VT8]
          Length = 987

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 66/232 (28%), Gaps = 23/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + S  L ++  L + + H+I +P+  I +  + L     +  +++           
Sbjct: 740 EDELMHSERLASVGRLAAGVAHEIGNPVTGISSLAQNLKLETDDPSILETADQIQQQTRR 799

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------------QVSWTGEK 108
               ++    +  + +           +   I     +              +   + + 
Sbjct: 800 ISTILQSLMNFARTGNHAHANRYEPVSLHRCIDESINLLSLSDKGLGISFLNECPASLQV 859

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +   +   ++ +NL   A  + P GG + ++ +      I  +   G+     +    I 
Sbjct: 860 LGDEQRLVQVFINLLANARDASPDGGTIRVAGKADGYSAIIEVIDEGSGIPADQL-DHIF 918

Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEI----IDDHNVVLSALLE 214
           +    +        +    V  +  E+   +  E            +   L 
Sbjct: 919 EPFYTTKAPNKGTGLGLSLVYSIIEEHYGNIQVESPANPETGLGTCVRLRLP 970


>gi|86607438|ref|YP_476201.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
 gi|86555980|gb|ABD00938.1| sensory box histidine kinase/response regulator [Synechococcus sp.
            JA-3-3Ab]
          Length = 1523

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 57/224 (25%), Gaps = 29/224 (12%)

Query: 20   SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
            + + H+I +P+ A+     LL E  +  E    +    +S    L  +     ++     
Sbjct: 854  ATMSHEIRTPMNAVLGMTGLLLETPLNAEQRDFVETIRVSGDALLTLINDILDFSKLEVG 913

Query: 78   ---------DSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNLF 123
                     D    L ++  +               V           +    +IL NL 
Sbjct: 914  EMELEILDFDLRSCLEEVADLFAPTAHAKGLELAVLVPPEVPRYLRGDASRLRQILNNLV 973

Query: 124  MVAHASLPRGGKVTISVQDSKNENIFS----LKINGNLARFPEKFTQIVDGNV------E 173
              A     +G  V  +    +          ++  G      +  T++            
Sbjct: 974  SNAIKFTHQGEVVIQAELMQETATHVQLRLSVRDTGIGI-PKDAQTKLFQPFTQVDASTT 1032

Query: 174  STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS--ALLEK 215
                   +       L      R+  E  +      S    LE+
Sbjct: 1033 RKYGGTGLGLAICKQLTELMGGRIFLESEEGRGSTFSLELTLER 1076


>gi|332701465|ref|ZP_08421553.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551614|gb|EGJ48658.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 917

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 63/240 (26%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSS 57
           +        ++ V  L S I H+  + +  I    E+      ++     +V++      
Sbjct: 667 ERQLRRAQRLEAVGTLASGIAHEFNNMLTLIMGFGEMALETSHEKSDCLLQVLRTAERGR 726

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---LSRE 114
                 L F R        +D      +   ++   +  D R++ S     +     + +
Sbjct: 727 DIVRQMLTFSRGDDQPRIPLDIGSTARECLDLLRATLPRDVRLESSLPERPLCVLANATQ 786

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQD------------------SKNENIFSLKINGN 156
             ++L+NL   A  ++         ++                          S+   G 
Sbjct: 787 IHQLLINLVSNAADAMRGQDPTGGIIRVELAHCPEDKSRTDPSRLLPGEHARLSVSDTGP 846

Query: 157 LARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I D    +        +    V  +       ++             LL 
Sbjct: 847 GM-AADVLERIFDPFFTTKEPGKGTGLGLAVVHGIVQAMDGVIMAASKPGQGACFDILLP 905


>gi|330985224|gb|EGH83327.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 998

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    I D   +         
Sbjct: 523 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRRALG 582

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 583 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIELNC 642

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I+   S+NE +F +  +G     
Sbjct: 643 TAAQGLVINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGIGIPA 702

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  E   D   V S  L 
Sbjct: 703 EHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTLP 758


>gi|310818142|ref|YP_003950500.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309391214|gb|ADO68673.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 558

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 63/244 (25%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL----------LCSRICHDIISPIGAIHNSLELLDEVGIE---- 46
           + +     + +  L             L + + HD+ +P+G +     LL          
Sbjct: 302 LCQRASLAIDNARLFGESRRATRAREDLLAVVSHDLKNPLGVVQLGAALLLRERPNVPRD 361

Query: 47  ---DEVMQLIRLSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIA 95
               +    IR +S  A+  +  +              T  VD+   + +    I     
Sbjct: 362 EHVHKHATRIRDASDRALRLISDLLDWGRLEEGRLPLETREVDASALVLEAVDSIRPLAE 421

Query: 96  VDKRVQV----SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL 151
                 V          +       ++L NL   A      GG+VT+  +   +E    +
Sbjct: 422 AHGLQVVVELPEGLPRVVCDRGRVLQVLGNLLGNAVKFTDPGGRVTVGARTQGDEARLYV 481

Query: 152 KINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           +  G      +                    +       L   +  R+  +         
Sbjct: 482 RDTGKGIPPEQLSYVFDRYWQAKDSVSRGTGLGLAIAKGLVEAHGGRIEAQSTLGEGSTF 541

Query: 210 SALL 213
           S  L
Sbjct: 542 SFTL 545


>gi|295102537|emb|CBL00082.1| diguanylate cyclase (GGDEF) domain [Faecalibacterium prausnitzii
           L2-6]
          Length = 1048

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 65/244 (26%), Gaps = 32/244 (13%)

Query: 3   KNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + +       D  +       +R+ HDI +PI  I   L++L     +   +        
Sbjct: 655 QRLQEAFEEADSASRAKTAFMNRMSHDIRTPINGILGMLDILRSNRDDARKVDSCLDKID 714

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-- 116
            +   L  +         +++   + + E    + +  D    V    EK  L+  R   
Sbjct: 715 LSAHHLLALVNDVLDMSKLEAGQMVMEQEPFDIEVLMHDVSSLVEAQIEKGGLTHRRHRE 774

Query: 117 ---------------KILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGN 156
                          +I++NLF  A      GG +           +     F +   G 
Sbjct: 775 NVQHTALVGSSLKLRQIMVNLFSNAIKYNKPGGSIDTYARELSCDGTTVWYEFRITDTGI 834

Query: 157 LARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                    Q+     +      +      +    V  L  +    +  E         +
Sbjct: 835 GMSRDFVENQLFKPFTQESADARTQYRGTGLGMSIVKELVSQMGGSISAESQPGEGTAFT 894

Query: 211 ALLE 214
             L 
Sbjct: 895 FQLP 898


>gi|254464412|ref|ZP_05077823.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
 gi|206685320|gb|EDZ45802.1| multi-sensor hybrid histidine kinase [Rhodobacterales bacterium
           Y4I]
          Length = 827

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 68/236 (28%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L+       L + + H++ +P+  +  +++L++  G+  E  + +R   +S 
Sbjct: 342 LRRARDDALAGERAKHNLLTVMSHEMRTPLTGVLGAIDLIEGTGLTQEQRRYLRAMRVSG 401

Query: 61  IIRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--- 109
            + L  +      +                   +  ++E   A  K   +  +       
Sbjct: 402 ELLLHHVNDVLELSRLESGADSEKLRIFDLDELVSGLVESQQASAKGQGIDLSLHCSLGG 461

Query: 110 -----DLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
                   R   ++LLNL   A      G      ++        FS+   G      + 
Sbjct: 462 KPVVAGRPRAVQQVLLNLIGNALKFTREGAVSVDVMRLSDGETVEFSVADTGQGIAPEDL 521

Query: 164 FTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +I +  +          +   +       L       +  E       + +  L
Sbjct: 522 -DRIFEDFITLDASYGRGSEGTGLGLAITKRLVDAMGGTITCESEPGEGSLFTISL 576


>gi|220921052|ref|YP_002496353.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219945658|gb|ACL56050.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 438

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 67/237 (28%), Gaps = 33/237 (13%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAI 61
           S+  L A+     +   H++ +P+ ++   +E L      +    D  + ++R  ++   
Sbjct: 185 SAKRLEAMRVDFVANASHELRTPLASLLGFIETLQGPARNDPAARDRFLAIMREQALRMT 244

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDLS 112
             +  +                              +          V +    E + + 
Sbjct: 245 RLIDDLLSLSRIELRAHVPPTTPIDVGPLARQIVVSLTPLAEERGVAVTLEADPEPLAVL 304

Query: 113 RERA---KILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEK 163
            +R    +++ NL   A      G         T   +    +   +++ +G     PE 
Sbjct: 305 GDRDEILRLVENLVENAVKYGGEGAHVAVRVARTPCEEGRTPQIEIAVQDDGPGI-APEH 363

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +                 +    V  + + ++ RL  E          A++ 
Sbjct: 364 LPRLTERFYRVDAVSSRQQGGTGLGLAIVKHILNRHRGRLSVESEPGRGSTFRAVIP 420


>gi|222053368|ref|YP_002535730.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
 gi|221562657|gb|ACM18629.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. FRC-32]
          Length = 946

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 69/243 (28%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRL 55
            K       +  + A+  L  ++ HD  + + AI     L    +       + ++ I  
Sbjct: 563 RKMEAQLRHAQKMEAIGTLTGKVAHDFNNMLTAIIGYCHLSQMQIHSNDPLMQNIRQIIT 622

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------SWTGEK 108
           ++  A    + +      T S    + L  + + +  F++      +             
Sbjct: 623 AAERAAGLTQSLLEYSRKTPSNPQAMELNQVVRQVNGFLSRLIGEDIELVTSPADEPLVI 682

Query: 109 IDLSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKI 153
           I  + +  ++L+NL   A  ++                     +    +     + S+  
Sbjct: 683 IADAGQIEQVLMNLATNARDAMSGKGRLIIGTATTRIGEDFLQSHGFGNPGTYALVSVSD 742

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G+     +   +I +    +    +   +    V  +  ++   +  E           
Sbjct: 743 TGSGM-DEDTCDKIFEPFFTTKPVGNGTGLGLSIVYGIVKQHNGYVTVESKKGCGTTFRV 801

Query: 212 LLE 214
            L 
Sbjct: 802 YLP 804


>gi|94969430|ref|YP_591478.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94551480|gb|ABF41404.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 699

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 62/224 (27%), Gaps = 12/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSS 57
           +     +    +   +   I H++ +P+ AI N + LL +   +      ++++      
Sbjct: 473 ERRMLEMEKFAVAGRMAGTIAHEVNNPMEAIKNCIFLLQDAIRDDSQPVYQILKTETERV 532

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
              + ++  +       G+VD    + D   +    +           G+   +     +
Sbjct: 533 ARIVRQMLGLYRNTEQVGNVDVNSVVEDTLMLFSRQLERAGVRVERDMGDLPPVMGSADQ 592

Query: 118 ILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
           I   L  +   +     +         +    +++     +  +G         T     
Sbjct: 593 IRQVLSNLVVNAKDSMAQGGKLRIRTRVKKNGTRDVISIVIADSGCGIPPNMVATMFEPF 652

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +  + V  +   +  +L      DH  V      
Sbjct: 653 VTTKGERGTGLGLWIVKGIIENHGGKLKVRSKVDHGTVFRMEFP 696


>gi|94311092|ref|YP_584302.1| Hpt sensor hybrid histidine kinase [Cupriavidus metallidurans CH34]
 gi|93354944|gb|ABF09033.1| hybrid sensory histidine kinase in two-component regulatory system
           [Cupriavidus metallidurans CH34]
          Length = 815

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 60/239 (25%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +     L S  + +   + + H+I +PI A+  +LELLD         +L+  +  SA  
Sbjct: 319 RARANALKSEKVKSEFLAIMSHEIRTPISAVVGALELLDREDNNTPRRELLHRARESADS 378

Query: 63  RLKFMRLAFGYTGSVD---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            L  +     Y+                       L   E + +      +    S    
Sbjct: 379 LLAVLNNVLDYSSISTGKILVKPSALRVNDLVRSVLDGFEAIADRKGIALQLNDQSGGHT 438

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSLKINGNLARFP 161
                    ++L NL   A     +G                +      +   G     P
Sbjct: 439 INLDGNRIRQVLGNLVANAIKFTEQGTVTVDVRLSRSERSSERVTLAIRVSDTGIGI-AP 497

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++           +    S  +       L       +           +   LE
Sbjct: 498 EDQPRLFQPFSQVGNARQRQTGSSGLGLSICKKLVEAMGGSISIWSTLGQGTTVEFSLE 556


>gi|92114535|ref|YP_574463.1| signal transduction histidine kinase [Chromohalobacter salexigens
           DSM 3043]
 gi|91797625|gb|ABE59764.1| signal transduction histidine kinase [Chromohalobacter salexigens
           DSM 3043]
          Length = 480

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 66/220 (30%), Gaps = 12/220 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M++ I   +   +    L S I HD+ +PI  +    E+LD     +  ++ +       
Sbjct: 264 MSERIRHQVEERE---RLFSAISHDLKTPITRLRLRAEMLDAPAQREAFIRSLDEMDQLV 320

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L  ++    +  +    +       V +     + RV +        L  +   +  
Sbjct: 321 KGALASVKGLDLHEQATAIDLDAMVRALVDDLAWHDEARVHLEG--RGGWLMAKPLALKR 378

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
            L  V   ++     V I ++   +     +  +G      E+  ++ +           
Sbjct: 379 CLANVIENAIFYAQCVRIELRRHPDHIHVIVSDDGPGI-PAEQRERVFEPFVRLEPSRNR 437

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +   +  E   +  + ++  L 
Sbjct: 438 HTGGSGLGLAIARHIVRAHGGDIRLETAREGGLSVTLSLP 477


>gi|2439990|gb|AAB71342.1| two component sensor regulator; ORF2 [Pseudomonas tolaasii]
          Length = 706

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 69  LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELSPRHVDYLGTIEKSA 126

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++       +      V    
Sbjct: 127 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 186

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ + +     +   S++  G     
Sbjct: 187 PLAVVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSN 246

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 247 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNL 306

Query: 214 EK 215
            K
Sbjct: 307 PK 308


>gi|9478257|gb|AAF87927.1|AF163841_4 putative histidine protein kinase [Myxococcus xanthus]
          Length = 333

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       L +  L+AL  + + + H+I +P+  I ++LE + +   + E +       +
Sbjct: 75  LRATQAQLLFADRLIALGRIAAGVGHEINNPLAFILSNLEYIHQELQQKEHLSEQDRQEV 134

Query: 59  SA----------------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                    R     TG  D    +    ++    +    R+ V
Sbjct: 135 LEALAETRDGAERIRLIVRDLQTLSRAEDVGTGPSDLGSVVRTAAKMAMHELRHRARLVV 194

Query: 103 SWT--GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKING 155
                           ++ LNL + A  S+  G      V               ++  G
Sbjct: 195 ECEGLPPVQGNGARLGQVFLNLLLNAAQSIVPGEVEKNEVHIVACESKAGRVAVEVRDTG 254

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I D    +        +       +       L  E       +    L
Sbjct: 255 CGI-SPEHRERIFDPFFTTKPLGVGTGLGLAVCHGIVTSLGGTLTVESAPVRGSIFRVTL 313

Query: 214 E 214
            
Sbjct: 314 P 314


>gi|83312663|ref|YP_422927.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82947504|dbj|BAE52368.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 681

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + +N+  +   ++  A + S   HD+  P+  I + L LL             + M+  R
Sbjct: 448 LLRNLDKSNRELEQFAYVAS---HDLREPLRMISSYLGLLGRRYTALLDEDGRQFMEFAR 504

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTG 106
             +      +  +          D L  +   E      + +   ++ S           
Sbjct: 505 DGAKRMDQMVLDLLEFSRVGRLRDGLGTVSLGEAASIAILNLALPIKESGGTVTVAPDLP 564

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARF--PE 162
           E      E  +++ NL   A      G  +T++V   +N      ++  NG        E
Sbjct: 565 EITGARGEMIRLMQNLIGNAVKYRQPGRPLTVTVSAERNHDGWTLTVADNGIGIPPDGFE 624

Query: 163 KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   I          +   I       +   +  R+  E +          L 
Sbjct: 625 RIFDIFQRLHSRADYEGTGIGLAVCRKIVEHHGGRIWVESVPGEGSRFRFTLP 677


>gi|16331796|ref|NP_442524.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001756|dbj|BAA10594.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 806

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 21/247 (8%), Positives = 59/247 (23%), Gaps = 33/247 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           +  +      +  L     + + H++ +P+ +I   +E L         G + + ++++ 
Sbjct: 404 LKLSNKILAKATQLKDEFLANMSHELRTPLNSILGMIETLQNQVYGPLNGKQVQSLEIVE 463

Query: 55  LSSMSAIIRLKF---MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------ 105
            S    +  +     +         +D                     +Q          
Sbjct: 464 NSGRHLLSLINDILDLSKIEAGRMDLDLNPTSVSALVNHSLTFVQQFAIQKQINLSSEII 523

Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPR----------GGKVTISVQDSKNENIFSLK 152
               + +   R   ++L+NL   A    P             +       S  +  F++ 
Sbjct: 524 PNLPDVLVDKRRLCQVLINLLNNAIKFTPEGGKVVVQADLIKEQGKENSQSPPQLSFTVF 583

Query: 153 INGNLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             G                     +    D   +    V  +   +   +      +   
Sbjct: 584 DTGIGIEADRLNNIFEPFVQIDSALNRRYDGTGLGLSLVKKIVELHGGSVTVTSKLNEGS 643

Query: 208 VLSALLE 214
                + 
Sbjct: 644 RFKITIP 650


>gi|87118787|ref|ZP_01074686.1| hypothetical protein MED121_17209 [Marinomonas sp. MED121]
 gi|86166421|gb|EAQ67687.1| hypothetical protein MED121_17209 [Marinomonas sp. MED121]
          Length = 631

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 19/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           +       + +  L AL  L   I H+I  P+ AI + L      LD+   +   + + +
Sbjct: 394 LKSTQNELVQAGKLAALGQLSVGITHEINQPLTAIASYLHTAGRHLDKAQPDKARLNIEK 453

Query: 55  LSS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSW 104
           +                F R A      V     + D  +++ + I              
Sbjct: 454 MHQLLDKIAGITRHLKAFAREAGTALSPVLLEPVILDAIELMSNQIREQNSRLEYQNNVK 513

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLARFPE 162
               +       ++L+NL   A  +L      ++ I+V + +++   S+   G      +
Sbjct: 514 DLNVLAEPIRLEQVLVNLISNAVDALSSAPLKQIQITVTEEESQVFISVSDTGIGIEADK 573

Query: 163 KFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                     +  +     +       +  +   ++            + +L+K
Sbjct: 574 LNQIFDPFFTQKEVGQGLGLGLSISYNIIQDFSGQIRVSSTQGQGSTFTLVLQK 627


>gi|325923492|ref|ZP_08185146.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325546028|gb|EGD17228.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 537

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 60/215 (27%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           SR  H++ +P+ AI    ++L+    E    + ++    +    L  +            
Sbjct: 182 SRSSHELRTPLNAILGYAQVLEMDLPEPAHRRHLQHILGAGRHLLGLITELLDIARIEAD 241

Query: 80  LIGLGDIEQVIEDFIAVD---------------KRVQVSWTGEKIDLSRERAKILLNLFM 124
            + L      +   +                  +   +         ++   ++LLNL  
Sbjct: 242 QLDLSPEPISVRAAVHEALGLIAPDADKYGIALQPAAIDGPWTVRADAQRLRQVLLNLLS 301

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDSH 179
            A      GG+V +S Q    +   ++   G      +   ++           S ++  
Sbjct: 302 NAVKFNRTGGQVQVSAQPDGEQVRITVADQGAGLTPAQI-ERLFTPFERLGAERSAVEGT 360

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L      R+  +   D        L 
Sbjct: 361 GLGLALSKRLIEAMGGRIGVDSSRD-GARFWIALP 394


>gi|320106380|ref|YP_004181970.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
 gi|319924901|gb|ADV81976.1| multi-sensor signal transduction histidine kinase [Terriglobus
           saanensis SP1PR4]
          Length = 791

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 17/224 (7%), Positives = 64/224 (28%), Gaps = 22/224 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIR-LK 65
            +     S + H++ +P+ ++  SL L+           + +++++   ++   +     
Sbjct: 560 KMKDEFISTVSHELRTPLTSMRASLGLIASGALASRPEKQKQMLEIAIGNTERLVSLVND 619

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSWTGEKIDLSRERAKIL 119
            + L    +G  +    L   + +                ++       +++  +  +IL
Sbjct: 620 ILELERIGSGKAELHSTLSSADDLFRRATGLLTGTAAKAGIKFEIEARGVNVWGDPDRIL 679

Query: 120 LNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE---KFTQIVDGN- 171
             +  +   ++    +           S +E    +  +G      +    F +    + 
Sbjct: 680 QTITNLLSNAIKFSPEGGKIRLEARNLSGDEAQIEVHDHGRGIPNDKLESIFERFQQVDA 739

Query: 172 -VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +       +  ++   +  E            L 
Sbjct: 740 SDSRAMGGTGLGLAICRSIVSQHGGHIWAESKYGRGSTFFFTLP 783


>gi|303247813|ref|ZP_07334081.1| histidine kinase [Desulfovibrio fructosovorans JJ]
 gi|302490714|gb|EFL50615.1| histidine kinase [Desulfovibrio fructosovorans JJ]
          Length = 479

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 23/234 (9%), Positives = 63/234 (26%), Gaps = 30/234 (12%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------------QLIR 54
            +  +    +L + + H+I +P+ A++   E +       +               + I 
Sbjct: 239 QAEKMATIGMLAAGVAHEINNPLTAVYGLAEGIRRRLPAIQERVSEALYADVAEYTETIL 298

Query: 55  LSSMSAIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +        ++ M                     D+L  L    +               
Sbjct: 299 MECRRCRDIVRSMLSFSRPHTLAFSPVCLNEVVTDTLNILRGHLEACGKQGLRLTVNLFD 358

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     +  ++LLN+ + +  ++   G     +  ++ N    S++  G     PE
Sbjct: 359 PLPTVPGDEAQLKQVLLNILVNSMDAIAGEGEITITTHPENDNTVNLSVEDTGCGI-PPE 417

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +    +        I       +  E+   +           ++  L 
Sbjct: 418 NMDKLFNPFFTTKPVGKGIGIGLAACYGIVREHHGFIEVASEVGLGTHVTVKLP 471


>gi|300783661|ref|YP_003763952.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
 gi|299793175|gb|ADJ43550.1| two-component system histidine kinase [Amycolatopsis mediterranei
           U32]
          Length = 473

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 61/232 (26%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSM 58
           ++     + + +    +   H++ +P+ +I    +L       E    +  +  IR  + 
Sbjct: 241 SLAAKTEANERLRRFVADASHELRTPLTSIRGYADLFRYAAANEPAEREAHLAKIREETA 300

Query: 59  SAIIRLKFMRLAFG----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
              + +  + L                 VD     GD                       
Sbjct: 301 RMTVLVDDLLLLARLDARAAETPLRPERVDLAELAGDAADAFAAGRPDHPVTSALSAAFV 360

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L NL   A    P G  V + V  S+ E I  +  +G      +   +I 
Sbjct: 361 DADPVRLRQVLDNLLANAAVHTPPGTPVHVEVTASEAEAIVRVTDSGPGIAVGD-QERIF 419

Query: 169 DGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D                 +    V  L   +   +  E +       S  L 
Sbjct: 420 DRFFRVDDSRTRGNGGTGLGLSVVQSLVTAHGGTVGVESVPGR-TTFSVRLP 470


>gi|298487112|ref|ZP_07005162.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158355|gb|EFH99425.1| Phytochrome, two-component sensor histidine kinase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 1003

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 73/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    I D   +         
Sbjct: 528 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRRALG 587

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 588 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIELNC 647

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I    S+NE +F +  +G     
Sbjct: 648 TAAQGLVINADPERIFQVLSNLVGNAIKFTPKGGRINIDAVASENEVLFKVSDDGIGIPA 707

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  E   D   V S  L 
Sbjct: 708 EHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTLP 763


>gi|323524614|ref|YP_004226767.1| ATP-binding region ATPase domain-containing protein [Burkholderia
           sp. CCGE1001]
 gi|323381616|gb|ADX53707.1| ATP-binding region ATPase domain protein [Burkholderia sp.
           CCGE1001]
          Length = 666

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 73/248 (29%), Gaps = 34/248 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE--DEVMQL 52
           +       + +  L AL  + + I H++  P+ A+    +    LL+        E ++ 
Sbjct: 404 LRAAHDELIQASKLAALGQMAAGITHELNQPLAALRGFSDNTRVLLERGDQASARENLEA 463

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSL------------------IGLGDIEQVIEDFI 94
           I   +         ++L  G      +                    G+     + +   
Sbjct: 464 IAALTERMGKITNQLKLFVGRARPRSARAPAVRALRNAVALLQKRLQGVELELALSDAQS 523

Query: 95  AVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIF 149
                + ++    ++ +  +     ++L+NL   A  +    G   ISV      +   F
Sbjct: 524 GARAPLDLADDHPELIVHCDDLRLEQVLINLLGNALDATAGSGAPRISVHIEVAADSLSF 583

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           ++  NG      +   ++ +    +        +       +A +    L+         
Sbjct: 584 AVSDNGPGI-PEDVLPRLFEPFFTTKEMGQGLGLGLAISSSIARDCGGTLVARNAPQGGA 642

Query: 208 VLSALLEK 215
           +    L +
Sbjct: 643 LFVLTLRR 650


>gi|302878536|ref|YP_003847100.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
 gi|302581325|gb|ADL55336.1| multi-sensor hybrid histidine kinase [Gallionella capsiferriformans
           ES-2]
          Length = 872

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 62/238 (26%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A++     +     ++  S + H++ +P+ AI     L+    +   + +        +
Sbjct: 403 LARDAAEAANRAK--SVFLSSMSHELRTPLNAILGFSALMSRDTMLSHIQRENLNIINRS 460

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----------------S 103
              L  +         +++       E      +  D    +                  
Sbjct: 461 GEHLLSLINDVLEMAKIEAGRVQVLHEAFDLGALVRDVSDMMAVRAQEKGLQLLVDQSSD 520

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARF 160
           +    +       ++L+NL   A      GG                +  ++ +G     
Sbjct: 521 FPRYIMGDEARLRQVLINLVGNAVKFTQHGGITMRFGIKPNLLPERLLIEVEDSGIGI-K 579

Query: 161 PEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   +I D  V+    S      +               +  E       V S  L 
Sbjct: 580 PEDQQRIFDAFVQIGDLSAQKGTGLGLTITRQFVQLMGGVITLESTPGVGAVFSVELP 637


>gi|224536759|ref|ZP_03677298.1| hypothetical protein BACCELL_01635 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521617|gb|EEF90722.1| hypothetical protein BACCELL_01635 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1164

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 68/228 (29%), Gaps = 24/228 (10%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
            L+   L     + I H+  +P+  I + +E L +       I ++++ + + S     +
Sbjct: 624 ALNQSKLR--FFTNISHEFRTPLTLIVSQVETLMQLQNFTPTIYNKILSIYQNSIQLREL 681

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEK-----IDL 111
             + +       G +   +   +I        +I    A  K++  ++  +         
Sbjct: 682 ITELLDFRKQEQGHMKVKVSPHNIVHFLYENYLIFMEYASSKQINFNFEKDCESLEVWYD 741

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            ++  K++ NL   A         +T+S+     E +  +   G+     E         
Sbjct: 742 QKQMQKVVNNLLSNAIKHTQAEDTITLSITTEGYEAVIRVTDTGSGIDAKEVDKIFDRFY 801

Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +D         I       +   +   +  E            L
Sbjct: 802 QTEQMDSLTTGVGTGIGLALTKGIVELHHGTIKVESELGKGSSFIVRL 849


>gi|166032915|ref|ZP_02235744.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC
           27755]
 gi|166027272|gb|EDR46029.1| hypothetical protein DORFOR_02636 [Dorea formicigenerans ATCC
           27755]
          Length = 687

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 65/240 (27%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + K+      + +        + HDI +P+ AI    +LL    D      E +  I+ S
Sbjct: 296 LKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNLDNEEKVREYLGKIKSS 355

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               +  +               L        +    +  + +       +   +  +  
Sbjct: 356 GNILMRIIDQVLEVARIESETAILKTEAANLSELFYSVNTVLESAIQMKGIHCSIDANVQ 415

Query: 106 GEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLAR 159
            +     + + + I LN+   A    P G  + +++ ++         +F  +  G    
Sbjct: 416 HKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTGIGMA 475

Query: 160 FPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    + + E       +    +    V         R+  E         +  + 
Sbjct: 476 PEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESEPGKGTKFTVEVP 535


>gi|163735121|ref|ZP_02142557.1| C4-dicarboxylate transport sensor protein dctB [Roseobacter
           litoralis Och 149]
 gi|161391579|gb|EDQ15912.1| C4-dicarboxylate transport sensor protein dctB [Roseobacter
           litoralis Och 149]
          Length = 586

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 63/224 (28%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVM-------QLIRLSS 57
            S  L AL  + + + H++  P+ A+   L    LL      +E +        LI    
Sbjct: 354 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRHEEALSSFGRIDDLIERMG 413

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSR 113
                   + R        V     L     ++E  +   +    R+      E +    
Sbjct: 414 GITRQLKSYARKGQEAFAPVPMGDALASSLAMMEPQLRQRQVQITRILPDDPVEVMGDRL 473

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +        + +   +      +++ NG      E    + +   
Sbjct: 474 RIEQVMVNLLRNAIDATKSAAAPKVDIILSAGETATLTVRDNGPGI---EDLDALFEPFY 530

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    D   +       +  +   RL          V    L 
Sbjct: 531 TTKQPGDGVGLGLAISSQIVTDLGGRLTARNGQQGGAVFEMQLP 574


>gi|153875396|ref|ZP_02003218.1| sensory box histidine kinase [Beggiatoa sp. PS]
 gi|152068141|gb|EDN66783.1| sensory box histidine kinase [Beggiatoa sp. PS]
          Length = 273

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 70/234 (29%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------------DEVGIEDEV 49
           A+++     +M+L A     + HD+ +P+ AI    E+L            +      +V
Sbjct: 35  ARSVELEKRNMELDAF-AHTVAHDLKNPLNAIIGYTEMLIGECSPDIPPDEEMRDTLHKV 93

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDS--LIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            Q  R         L    ++       +   +  + +  +    ++  + +  +     
Sbjct: 94  EQAGRKMVSIIDALLLLAGVSKQTNLVSEPLDMADIIEQVKQRLSYMINEYQANIKLPET 153

Query: 108 K---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLARFPEK 163
                  +    ++  N    A     +   V +     + +   F ++ NG+       
Sbjct: 154 WITAQGYAPWVEEVWTNYISNAIKYGGKPPYVELGANTEEKDKVRFWVRDNGSGL-TEAA 212

Query: 164 FTQIVDGN---VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             Q+          +++ H +    +  +      ++  E  +    +    L 
Sbjct: 213 KEQLFIPFTRLHAGSVEGHGLGLSIIRQVVERLGGQVGVETKEGQGCLFYFTLP 266


>gi|108758078|ref|YP_628729.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|54873443|gb|AAV40993.1| RedC [Myxococcus xanthus]
 gi|108461958|gb|ABF87143.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 469

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----------DEVGIEDEVMQ 51
           +     +  +  V  L + + H++ +P+ A+ NS   L            +     + + 
Sbjct: 232 QEHLIRVEKLAAVGQLAASVGHELRNPLAAVRNSHAYLSRKLTRDPAGAADDPRVPQFLG 291

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE---- 107
           L+     +    +  +               L  +       +   + V++         
Sbjct: 292 LMERELNACAKIISDLLDFARERPPALQPCPLRPLVDEAIGVVPQREGVRIVNDVPESLP 351

Query: 108 -KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKINGNLARFPEK 163
                  +  ++L+NL   A  ++P G    +SV       +     +  +G     PE 
Sbjct: 352 VPHLDKEQFRQVLVNLVQNAVEAMPVGRNGVVSVVAEGGDASPWRIRVMDDGAGI-PPEV 410

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +      +    V  +   +   +      +        L 
Sbjct: 411 LPKIFEPLFTTKTRGTGLGLAIVANMVQRHGGTISVRSEAERGSEFLIELP 461


>gi|85705134|ref|ZP_01036234.1| hypothetical protein ROS217_04465 [Roseovarius sp. 217]
 gi|85670456|gb|EAQ25317.1| hypothetical protein ROS217_04465 [Roseovarius sp. 217]
          Length = 884

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 62/225 (27%), Gaps = 13/225 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +++       +L A L + + HD+ +P+ A+  + E L   G E E+++ +R  +     
Sbjct: 647 RDMEVVRQRDNLRAALLASLSHDLRTPLTAVTAAAEALSATGDEAELVETVRSEARRLNR 706

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL--- 119
            L  +           +   +      +      D    ++       +      +    
Sbjct: 707 FLSDLLDLTRIEEGAVTPDLVPTDLTDVIASALGDLSKSLTGRKVLTSIDPNLPLVRADA 766

Query: 120 -------LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVD 169
                  LNL   A    P+   + I  +  +   +  +  +G           F +   
Sbjct: 767 VLLNHALLNLVDNAAKYSPQDAPIEIIARMGRRGPVIDVLDSGPGIPQGSEQRIFDRFAR 826

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G          +    V   A      +            +  + 
Sbjct: 827 GETSDRTGGSGLGLAIVKGFAAAMGFTVEAARRQGGGSRFTIRIP 871


>gi|46201589|ref|ZP_00208161.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 572

 Score =  108 bits (270), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 60/231 (25%), Gaps = 24/231 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL------ 55
           A+ +  + + ++  A + S   HD+ +P+  I    ++LD    +    +          
Sbjct: 339 AQLLERSNADLERFAYVAS---HDLKTPLRVITGYAQMLDRRYRDKLDEEANEYIAFLTA 395

Query: 56  ----SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                       L + R+            G      +      +++       G    +
Sbjct: 396 GTKRMYRLITDLLHYSRINSQAKPLQPVSSGRAADIAISNLKAVIEENGATISVGPLPTI 455

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEKFT 165
             + +++      +   ++         +              F++K NG     PE F 
Sbjct: 456 QADESQLSSLFQNLLGNAIKYRHPERKPLIRIEAVRLSGTLWRFAVKDNGIGI-EPEHFE 514

Query: 166 QIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +I          S  D   I       +      R+  E            
Sbjct: 515 RIFVIFQRLHADSAYDGTGIGLALCQRIVTRLGGRIWVESKPGEGSTFFFT 565


>gi|330989648|gb|EGH87751.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 694

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 70/230 (30%), Gaps = 25/230 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSS 57
            S+ + A+  L   I HD  + +  +  SL+L+                D  +   + ++
Sbjct: 320 QSLKMEAVGQLTGGIAHDFNNMLTGVIGSLDLIKLRMASGRLEGVERFMDAALISAQRAA 379

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                 L F R       +V     +  +  +++  +     ++   + E   +  +  +
Sbjct: 380 SLTDRLLAFSRRQSLDEKAVSVNNLITALADLLQKTVTEKIIIKFDLSPEDPWVFADANQ 439

Query: 118 ILLNLFM---VAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +   +      A  ++P              +  +        ++  G+     +   ++
Sbjct: 440 LENAVLNLVINARDAMPHGGGLTIATCVEQEAQDEPLRHVCVQVRDTGHGI-PKDMLDKV 498

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +        +    V   A+++  RL  E        +S  L K
Sbjct: 499 TEPFFTTKPIGQGTGLGLSMVYGFANQSNGRLSIESTTGVGTTVSICLPK 548


>gi|315616390|gb|EFU97007.1| sensor kdpD domain protein [Escherichia coli 3431]
          Length = 566

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 321 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 379

Query: 54  RLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 380 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 439

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 440 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 499

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 500 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 552


>gi|300997413|ref|ZP_07181753.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 200-1]
 gi|300304232|gb|EFJ58752.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 200-1]
          Length = 431

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSHD 180
           A    P G  +T+  Q   +   FS++ NG        P    +    +           
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPHLTERFYRVDKARSRQTGGSG 388

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V    + ++ RL  E         S ++ 
Sbjct: 389 LGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|288958349|ref|YP_003448690.1| two-component sensor histidine kinase, nitrogen regulation sensor
           [Azospirillum sp. B510]
 gi|288910657|dbj|BAI72146.1| two-component sensor histidine kinase, nitrogen regulation sensor
           [Azospirillum sp. B510]
          Length = 404

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 71/221 (32%), Gaps = 26/221 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAIIRLKFMRLAFGYTG 75
           + + + H++ +P+  I  + +LL+E   + + +  +LI   +   +  +  M +      
Sbjct: 154 MAAMLAHEVKNPLSGIRGAAQLLEENASDQDRVLTRLICDEADRIVALVNRMEVFSDERP 213

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------IDLSRERAKILLNLFMVAHA 128
              + + +  + + +          ++ +                +  ++ LNL   A  
Sbjct: 214 LERAAVNIHTVLEHVRKVAQSGFARKIRFVERYDPSLPPVYGNRDQLVQVFLNLVKNAAE 273

Query: 129 SLPRGGKVTISVQDSKNENIF---------------SLKINGNLARFPEKFTQIVDGNVE 173
           + P  G         ++                   +++ NG+     +  + + D  V 
Sbjct: 274 AAPESGGEITLTTSYQHGVRMALPGGDVRRHLPLLVTVQDNGDGI-PEDLQSNLFDPFVT 332

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           S ++   +    V  L  ++   +  +       V    L 
Sbjct: 333 SKVNGTGLGLALVAKLIGDHGGTIEFDSQP-RRTVFKVSLP 372


>gi|296085009|emb|CBI28424.3| unnamed protein product [Vitis vinifera]
          Length = 1203

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 62/250 (24%), Gaps = 42/250 (16%)

Query: 4   NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
            +     + D+  +   + + H+I +P+  +   L++L + G++         +  S   
Sbjct: 630 ELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDSGLDANQQDYAETAHASGKD 689

Query: 63  RLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTG 106
            +  +                     D    L ++  +               +      
Sbjct: 690 LISLINEVLDQAKIESGRLELEAVPFDLRAALDNVLSLFSGKSHEKGIELAVYISDQVPE 749

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN------------------ENI 148
             I       +I+ NL   +       G + +SV  +                    + +
Sbjct: 750 FVIGDPGRFRQIITNLVGNSIKFTHDKGHIFVSVHLADEVKFKKLSCTDSMEETSIIKLL 809

Query: 149 FSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEII 202
            +++  G      E  ++I    +        T     I       L       +  E  
Sbjct: 810 VTVEDTGVGI-PSEAQSRIFMPFMQADSSTSRTYGGTGIGLSISKRLVDLMGGEIGFESE 868

Query: 203 DDHNVVLSAL 212
                  S  
Sbjct: 869 PGTGSTFSFT 878


>gi|300022124|ref|YP_003754735.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523945|gb|ADJ22414.1| PAS/PAC sensor hybrid histidine kinase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 630

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 67/241 (27%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSM 58
            +     L  ++ V  L   I HD  + +  I  +LELL+   E   + E++     ++ 
Sbjct: 247 RRESSLRLQKLEAVGQLTGGIAHDFNNLLTIISGNLELLEGTIENPDDRELLSRAMRAAD 306

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
           S     + +            +I L +  + + + +       +                
Sbjct: 307 SGARLTRRLLTFARRRQLAPEVINLNEQVRSMTELLHRTLGATIDLQTSFARDLWLTRAD 366

Query: 114 --ERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
             E    ++NL + A  ++P                          + +    S+  NG+
Sbjct: 367 AGEVESAVINLAINARDAMPNGGKLAIRTSNAALEGDEVGFEGPLVAGDYVRVSVSDNGS 426

Query: 157 LARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   ++ +    +        +    +     ++   +           ++    
Sbjct: 427 GM-TKDVLGRVFEPFFTTKPPGRGTGLGLSTIYGFIKQSGGSITIYSEPGAGTTVNLYFP 485

Query: 215 K 215
           +
Sbjct: 486 R 486


>gi|268317862|ref|YP_003291581.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262335396|gb|ACY49193.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 487

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 18/223 (8%), Positives = 63/223 (28%), Gaps = 21/223 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            L +   + + H+I +P+  I    ++L+E   +    ++ ++   S    L  +     
Sbjct: 246 RLKSTFLANMNHEIRTPLAGILGYAQILEEELNDPMHCEMAQVIKQSGQRLLDTLDALLY 305

Query: 73  YTGSVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
            +      + +   +            ++          + V  +   +    +     +
Sbjct: 306 MSCLEAGTVRVRHQDLDVVAATRAVVDELAPLARDKKLELTVQSSEPALIACVDEGLWER 365

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP-----EKFTQIVDGNV 172
           ++ NL   A      G    +   D++      +   G            +  +     +
Sbjct: 366 LVKNLVHNAIKFTEAGSVTVLLEGDAET-VQLQVADTGIGIPEELQSVIFEEFKQASSGL 424

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +    V  +      ++  E       + + ++ +
Sbjct: 425 SRDYEGSGLGLTIVQRIVRMLSGQIYVESQPGIGSIFTVIIPR 467


>gi|229138611|ref|ZP_04267195.1| hypothetical protein bcere0013_17270 [Bacillus cereus BDRD-ST26]
 gi|228644890|gb|EEL01138.1| hypothetical protein bcere0013_17270 [Bacillus cereus BDRD-ST26]
          Length = 276

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 31  MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHSNGEECEQYVS 90

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S        + +         ++    + +++ ++E  +                
Sbjct: 91  ILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSFCM 150

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I +          +K  G     
Sbjct: 151 KGDKELHVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQCIPK 210

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +                       I       +A  ++  +     D    V +  L 
Sbjct: 211 EDLPYVFEKFYRSEKSRSSHTGGKGIGLAISKSIADLHQGDITVRSNDKE-TVFTVKLP 268


>gi|222095532|ref|YP_002529592.1| sensor histidine kinase [Bacillus cereus Q1]
 gi|221239590|gb|ACM12300.1| sensor histidine kinase [Bacillus cereus Q1]
          Length = 366

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 121 MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHSNGEECEQYVS 180

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S        + +         ++    + +++ ++E  +                
Sbjct: 181 ILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSFCM 240

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I +          +K  G     
Sbjct: 241 KGDKELHVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQCIPK 300

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +                       I       +A  ++  +     D    V +  L 
Sbjct: 301 EDLPYVFEKFYRSEKSRSSHTGGKGIGLAISKSIADLHQGDITVRSNDKE-TVFTVKLP 358


>gi|218708960|ref|YP_002416581.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
 gi|218321979|emb|CAV17985.1| sensory box histidine kinase/response regulator [Vibrio splendidus
           LGP32]
          Length = 1462

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/245 (9%), Positives = 63/245 (25%), Gaps = 33/245 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            + +       +      +   + I H++ +PI  I   LEL+ E  + +E++ L    +
Sbjct: 705 QQALDNARQKAESATAAKSQFLATISHEVRTPISGILGLLELMQEHQLSEELLNLHGGLN 764

Query: 58  MSAIIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
            SA   L  +     Y+                   L  +   + +      +       
Sbjct: 765 QSARNLLHIVNDVLDYSKIEAGKLDLNPTEIELGKVLARIVQPQSIHAQQKGLAFHYWQD 824

Query: 104 WTGEKIDLSRER--AKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGNL 157
               +   + +    +IL N    A      G            + + +   ++   G  
Sbjct: 825 PNLAQWLFADDIRLHQILNNFLNNAIKFTEHGTISLHIDVIEQNEHQQKVSLTVSDTGIG 884

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VL 209
               ++   +                   +     + L  +    +     +       +
Sbjct: 885 I-PKDRQQSLFQPFEQVDKTTSRRFGGTGLGLSIALKLIEQMDGNIELSSEEGKGSHFTV 943

Query: 210 SALLE 214
           +  L 
Sbjct: 944 TVTLP 948


>gi|217959392|ref|YP_002337940.1| sensor protein VanS [Bacillus cereus AH187]
 gi|217064047|gb|ACJ78297.1| sensor protein VanS [Bacillus cereus AH187]
          Length = 291

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 65/239 (27%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 46  MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHSNGEECEQYVS 105

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S        + +         ++    + +++ ++E  +                
Sbjct: 106 ILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDANMSFCM 165

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I +          +K  G     
Sbjct: 166 KGDKELHVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQCIPK 225

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +                       I       +A  ++  +     D    V +  L 
Sbjct: 226 EDLPYVFEKFYRSEKSRSSHTGGKGIGLAISKSIADLHQGDITVRSNDKE-TVFTVKLP 283


>gi|218246153|ref|YP_002371524.1| adaptive-response sensory kinase [Cyanothece sp. PCC 8801]
 gi|257059201|ref|YP_003137089.1| adaptive-response sensory kinase [Cyanothece sp. PCC 8802]
 gi|254767546|sp|B7K3M6|SASA_CYAP8 RecName: Full=Adaptive-response sensory-kinase sasA; AltName:
           Full=Synechococcus adaptive sensor protein A
 gi|218166631|gb|ACK65368.1| histidine kinase [Cyanothece sp. PCC 8801]
 gi|256589367|gb|ACV00254.1| histidine kinase [Cyanothece sp. PCC 8802]
          Length = 391

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + K     L  +     + + + HD+ SP+ A   ++E L+      +     ++ + + 
Sbjct: 149 LKKEKDELLQQLKFKDQVLAMLAHDLRSPLTAASIAVETLELTQKQEDTERRAQLREQLY 208

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------------RVQ 101
             +      +  +           +         +    +  D               + 
Sbjct: 209 HQARKQFRVMNRLITDILQASKTMTAQLSVYYHDLFLPVLCQDILDEYREIFKEKSLTLV 268

Query: 102 VSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNL 157
                +   +  +     ++++NL   A    P GGKVT+S+   +  +   S+   G  
Sbjct: 269 KDIPQDIPTVYADEELIRQVIVNLLDNAIKYTPSGGKVTVSILHRTTQKVQVSICDTGPG 328

Query: 158 ARFPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               EK  +I +G+         + + +       +   +  ++  + + D        L
Sbjct: 329 I-PEEKQERIFEGHFRLKRDQEKEGYGLGLSLCRKIIRTHYGQIWVDSVPDQGSCFHFTL 387

Query: 214 E 214
            
Sbjct: 388 P 388


>gi|170691562|ref|ZP_02882727.1| histidine kinase [Burkholderia graminis C4D1M]
 gi|170143767|gb|EDT11930.1| histidine kinase [Burkholderia graminis C4D1M]
          Length = 666

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 69/248 (27%), Gaps = 34/248 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE--DEVMQL 52
           +       + +  L AL  + + I H++  P+ A+    +    LL+        E ++ 
Sbjct: 404 LRAAHDELIQASKLAALGQMAAGITHELNQPLAALRGFSDNTRVLLERGDQASARENLEA 463

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGS------------------VDSLIGLGDIEQVIEDFI 94
           I   +         ++L  G                           G+     + +   
Sbjct: 464 IAALTERMGKITNQLKLFVGRARPRSARASAVRALRNALALLQKRFQGVELQLALFDVES 523

Query: 95  AVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDS--KNENIF 149
                + ++     +    +     ++L+NL   A  +        ISV      +   F
Sbjct: 524 GTRTPLDLADDHPDLIAHCDDLRLEQVLINLLGNALDATAGMSAPRISVHIEVASDNLSF 583

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           ++  NG      +   ++ +    +        +       +A +    L+         
Sbjct: 584 AVGDNGPGI-AEDVLPRLFEPFFTTKEMGQGLGLGLAISSSIARDCGGTLVARNAPQGGA 642

Query: 208 VLSALLEK 215
           +    L +
Sbjct: 643 LFVLTLRR 650


>gi|159900627|ref|YP_001546874.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
 gi|159893666|gb|ABX06746.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
            aurantiacus ATCC 23779]
          Length = 3470

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 66/236 (27%), Gaps = 24/236 (10%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
            ++I   + +        + + H++ +P+  I   ++LL           + E++  ++ +
Sbjct: 3221 RDITREVEADRAKRDFVATVSHELRTPLTPIRGFVDLLLLGAVGQLSDPQREMLNTVKTN 3280

Query: 57   SMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSWTGE 107
            +M  +  ++ +              T        + DI      +    +  +++     
Sbjct: 3281 AMRMVGLVEDLLEIGRLEAGKIVLNTAPNQINQLVRDIVATWGLEIEKKNMTLKLELDDT 3340

Query: 108  KIDLSRERA---KILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK 163
               +  +     ++L N+   A      G   +  +  +        +K  G      ++
Sbjct: 3341 LPLIEYDSKRIGQVLTNMVSNAIKYTYAGGDVIIRTFINEDKMIQLDVKDTGVGLTAEQQ 3400

Query: 164  FTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +               +    +           +   +  + +       S  L 
Sbjct: 3401 KSMFKRFYRADSPLRDEVGGTGLGLSIAKSFIELHNGDMWVQSVYGEGSTFSFSLP 3456


>gi|126658520|ref|ZP_01729668.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
 gi|126620262|gb|EAZ90983.1| sensory transduction histidine kinase [Cyanothece sp. CCY0110]
          Length = 400

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 59/219 (26%), Gaps = 26/219 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           S + H++ +P+  I    ++L E         + + +  IR+S    +  +         
Sbjct: 178 SHVSHELRTPLAGILGFSKMLREEIYGTLNDKQKQYVNGIRISGEHLLALVNDFLDLSKI 237

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------------EKIDLSRERAKILLN 121
             + + L       + I        + +                       R+  +IL+N
Sbjct: 238 EANKEELFLETVAVEDICLAAISMVQPKADEQNLNLLLKLSDQVDFCKVDQRKIKQILIN 297

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------EST 175
           L   A     +G  VT+ V        F +   G      E   ++              
Sbjct: 298 LLSNAIKFTEKGS-VTLEVDKIDCLLTFCVVDTGIGI-KEEDQQKLFQPFQQIHSNLSRK 355

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       LA  ++  L  +         +  L 
Sbjct: 356 HKGTGLGLALSKKLAQLHQGDLTLQSEYGKGSCFTLELP 394


>gi|21230299|ref|NP_636216.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769707|ref|YP_244469.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188992922|ref|YP_001904932.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21111848|gb|AAM40140.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575039|gb|AAY50449.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167734682|emb|CAP52892.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris]
          Length = 636

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 63/234 (26%), Gaps = 24/234 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      +         SR  H++ +P+ AI    ++L+    E    + ++    + 
Sbjct: 264 LARREAETANRAK--TEFLSRSSHELRTPLNAILGYAQVLEMDLPEPGHRRHLQHILGAG 321

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVSWT 105
                                      +     + +   +I           +   +   
Sbjct: 322 RHLLGLITELLDIARIEADQLDLSPEPIAVRAAVHEALGLIAPDADKHGISLQPPAIDGP 381

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 ++   ++LLNL   A      GG+V +S Q   ++    +   G      +   
Sbjct: 382 WTVRADAQRLRQVLLNLLSNAVKFNRTGGQVQVSAQPDGDQVRIVVADQGAGLTAAQI-E 440

Query: 166 QIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++           S ++   +       L      ++  +   D        L 
Sbjct: 441 RLFTPFERLGAERSAVEGTGLGLALSKRLIEAMGGQIGVDSSRD-GARFWISLP 493


>gi|25026980|ref|NP_737034.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259508537|ref|ZP_05751437.1| sensor histidine kinase [Corynebacterium efficiens YS-314]
 gi|23492260|dbj|BAC17234.1| putative sensor kinase [Corynebacterium efficiens YS-314]
 gi|259163887|gb|EEW48441.1| sensor histidine kinase [Corynebacterium efficiens YS-314]
          Length = 413

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 60/232 (25%), Gaps = 22/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++    + S        + + H++ +P+G +    E L E   + E ++           
Sbjct: 147 ESENVRMESAR--RDFVANVSHELKTPVGGMALLAEALMEAVDDPEQVEYFGARLHREAH 204

Query: 63  RLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           R+  M                     V     + +  +  +      +   V      + 
Sbjct: 205 RMADMINELISLSKLQGAERLPDMEPVKVDDIIDEAIERTQLAADNAQIELVRGDRTDVW 264

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           ++ ER+ ++  L      A    P+   V++S     +  +  +   G      ++    
Sbjct: 265 VNAERSLLVTALANLISNAINYSPQSMPVSVSQNVCNDVVMIRVTDRGIGIAPEDQGRVF 324

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +    V  +   +   +            +  L 
Sbjct: 325 ERFFRVDKARSRQTGGTGLGLAIVKHVMANHGGNISLWSRPGTGSTFTLELP 376


>gi|332702019|ref|ZP_08422107.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552168|gb|EGJ49212.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 522

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 52/236 (22%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------DEVMQLI 53
           + ++      +    +   + + H++ +P+G +    EL                V++  
Sbjct: 135 LRRSEQEAEEASRAKSEFLASMSHELRTPLGGVLGMTELALMSEPSAAVRTYLQMVLRSG 194

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---------IEDFIAVDKRVQVSW 104
           +         L   R+             L     +           + + +   V  + 
Sbjct: 195 QALRDLVNDLLDLSRIEARKLELESVDFDLRAELALALDPLILDARANGLCLRHSVAPAV 254

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFP 161
                  S    +++ NL   A     +GG           + +   F +   G      
Sbjct: 255 PAMVRGDSGRLRQVITNLVSNALKFTEQGGITVAVESDTTGAPDLLRFRVTDTGIGIAAD 314

Query: 162 EKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +                       +       L      RL  E            
Sbjct: 315 QLEAVFDTFRQLRDKDGRTRGGMGLGLAICRRLVDLMGGRLWAESEPGKGSCFQFT 370


>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
 gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
           DSM 574]
          Length = 1274

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/227 (10%), Positives = 54/227 (23%), Gaps = 28/227 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H+I +P+  I    E+L +  +  +  + +R+        L  +      + 
Sbjct: 545 SEFLANMSHEIRTPMNGILGFAEILLQTNLNSQQEESVRIIQQCGENLLDLINDILDLSK 604

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKR----------------VQVSWTGEKIDLSRERAKIL 119
                + L      +   I                     +Q               ++L
Sbjct: 605 IESGKMVLEQTTFSLRKLIYEAVNVIEPKLIEKGVEIKISIQKDLPDYFKGDPTRIRQVL 664

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENI-------FSLKINGNLARFPEKFTQIV---- 168
            NL   A      G           +          FS+   G      +          
Sbjct: 665 NNLLSNAAKFTHEGHVEVKVNGQKDHSVETDSFTLVFSVSDTGIGIPREKLDLIFESFTQ 724

Query: 169 -DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            DG+         +       L +    ++  E   +     S  + 
Sbjct: 725 ADGSTTRKYGGTGLGLTISRSLINLMGGQITVESEVNRGSKFSFSIP 771


>gi|302036411|ref|YP_003796733.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
 gi|300604475|emb|CBK40807.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
          Length = 1340

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 33/242 (13%)

Query: 4   NICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                L S    A           + + H+I +P+ AI    +LL E  + ++  + +++
Sbjct: 695 EAETALMSAKEAAEFANRAKSDFLATMSHEIRTPMNAIVGMADLLSETPLNEDQREYVQI 754

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KR 99
              +    L  +      +      + L  ++  + D +                    +
Sbjct: 755 FRDAGSNLLSLINDVLDLSKIEAGHLDLDLVDFDLNDLVQRAAELVAVRASEKNLELAYQ 814

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKING 155
           +Q       +       ++LLNL   A      G            D     +F+++  G
Sbjct: 815 IQPDVPTSLVGDPNRLRQVLLNLLGNAIKFTDEGEVVLRVERDPQADGPGTILFTVRDTG 874

Query: 156 NLARFP---EKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                      F +    +           +       L      ++  +         S
Sbjct: 875 IGIPTDKLAAIFERFTQVDSSTTRPYSGTGLGLTISRRLVERMGGKMWVDSELGRGSTFS 934

Query: 211 AL 212
             
Sbjct: 935 FT 936


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
 gi|254040127|gb|ACT56923.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 84/249 (33%), Gaps = 36/249 (14%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLS 56
            K +   +  +  L A+  L   I HD  + + AI  S +  LL     +     L+ + 
Sbjct: 404 QKALEARMAQTQKLNAVGTLAGGIAHDFNNVLTAILLSSDHLLLQSRSSDASFADLMEIK 463

Query: 57  SMSAII------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             +          L F R        ++    +G++  +I+  I+   +V+++   E+  
Sbjct: 464 HNANRAAILVRQLLAFSRKQTMRLTVLNLTEVIGNLRMMIQKLISEPPQVKLTVDYERDL 523

Query: 111 LSR-----ERAKILLNLFMVAHASLP-----------------RGGKVTISVQDSKNENI 148
                   +  ++L+NL + AH ++                         S   +K+  +
Sbjct: 524 WGVKTDLSQFEQVLVNLCVNAHHAIMLKESGSLTVRTRNIPSTEIHTFNYSDLPTKDMVL 583

Query: 149 FSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             ++  G     P+   +I +    +    +   +    V  +  ++   +LPE      
Sbjct: 584 VEVEDTGIGM-SPDIMEKIFEPFFTTKKVGEGTGLGLSVVYGIIRQSGGYILPESEVGKG 642

Query: 207 VVLSALLEK 215
            +    L +
Sbjct: 643 TIFRIFLPR 651


>gi|229515723|ref|ZP_04405182.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
 gi|229347492|gb|EEO12452.1| hypothetical protein VCB_003381 [Vibrio cholerae TMA 21]
          Length = 1331

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|159898878|ref|YP_001545125.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159891917|gb|ABX04997.1| integral membrane sensor signal transduction histidine kinase
           [Herpetosiphon aurantiacus ATCC 23779]
          Length = 458

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 62/225 (27%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIR 63
            +  L   + + + HD+ +P+  +    E L +  ++        +   +          
Sbjct: 233 KATHLRKQMTADLAHDLRTPLSILRGYAEGLRDGVLQPSETIYTVIFDEVTHLQRLVDDL 292

Query: 64  LKFMRLAFGYTGSVDS---LIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRER 115
                   G             L +   +     A  + +++              +   
Sbjct: 293 RVLSLADAGELSLNRRLVDPAALIERTILSAFVQAERQNIELKLETEAGLPSVSVDTDRM 352

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV 172
           A++L NL   A     +G    I+ +    +    ++  G+     +    F +   G+ 
Sbjct: 353 AQVLNNLVNNALRHTKQGSISLIAKRQ-AQQVQLIIRDTGSGIDPADVPYIFARFYRGDS 411

Query: 173 ESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   S  +    V  +   ++ ++  E            L 
Sbjct: 412 SRQREDQASTGLGLAIVKAIVEAHQGQIEVESSLGEGTSFIISLP 456


>gi|120553043|ref|YP_957394.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
 gi|120322892|gb|ABM17207.1| multi-sensor hybrid histidine kinase [Marinobacter aquaeolei VT8]
          Length = 1182

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 58/222 (26%), Gaps = 25/222 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H+I +P+ AI    E L +  + +   +    + + +   L  +        
Sbjct: 567 SQFLANMSHEIRTPLAAIIGYGETLLDPDLNETEKRSSAETVVRSGRHLLELVNDILDHS 626

Query: 76  SVDSLIGLGDIEQVI---------EDFIAVDKRVQVSWTGEKIDL--------SRERAKI 118
            +D+     D+  V            F    +   + ++                   +I
Sbjct: 627 KIDANKLDVDVVPVNLPELLDEIRAFFAPRAREKGLDFSIICDYPLPEKIRTDPTRYRQI 686

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN------ 171
           ++NL   A      G    I   D    +    +   G     PE+  ++ D        
Sbjct: 687 IINLCGNALKFTENGSISLIIRCDRGAEKLYARVVDTGIGM-KPEQLDRLFDPFAQGSTA 745

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +        +       LA      +               +
Sbjct: 746 ISRQYGGTGLGLSISRRLAELLGGDIRVSSTYGEGSEFEVCI 787


>gi|332523378|ref|ZP_08399630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus porcinus str. Jelinkova 176]
 gi|332314642|gb|EGJ27627.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Streptococcus porcinus str. Jelinkova 176]
          Length = 342

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLS 56
           +  +      S    +++ +++ HDI +P+ +I  ++E + +       E   +  I   
Sbjct: 106 LEASFESLNESEREKSMMIAQLSHDIKTPLTSIQATVEGILDGVISKEEERAYLNTISRQ 165

Query: 57  SMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
           +      ++ ++             A         LI +    Q+  +       +QV+ 
Sbjct: 166 TNRLNQLVEELQVVSLNDQKHEVKQASQVIYLEKLLIEILSEFQLTLERENRTVNIQVAP 225

Query: 105 TGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
              KI    +  ++I+LNL   A         +TI       +    +   G   +  + 
Sbjct: 226 DVVKIKSQYDALSRIILNLVSNAIKYSKVNTALTIRAYRQSQKIRIDVIDQGQGIKEEDM 285

Query: 163 --KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F ++             H +  Y    LAH+    +  E         S  L 
Sbjct: 286 SLIFKRLYRVETSRNMKTGGHGLGLYIAKQLAHQLDGDISVESQLGKGSAFSLFLP 341


>gi|317494012|ref|ZP_07952428.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917785|gb|EFV39128.1| hsp90-like protein [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 780

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E +  ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELNQEQLNYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                   V    +      Q +   + +       +IL NL 
Sbjct: 348 KVQLDNQPIDFTGFLTDLENLSGLLVQPKKLDFTLEHQPNLPHKILADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A     +GG      +++  +  F +K +G      E+                    
Sbjct: 408 GNAVKFTQKGGVNVKVWRETGGKLFFEVKDSGIGIPQDEQDKIFAMYYQVKDQNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      ++           +  +
Sbjct: 468 GTGIGLAVSKRLAQNMGGDIVVRSTPGEGSCFTLSI 503


>gi|296423107|ref|XP_002841097.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637330|emb|CAZ85288.1| unnamed protein product [Tuber melanosporum]
          Length = 1260

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/221 (10%), Positives = 59/221 (26%), Gaps = 18/221 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           N      +  L +   + + H+I +PI  +    E+L +  +E+E  +       SA   
Sbjct: 725 NESAAKEASKLKSEFLASMSHEIRTPITGVVGMAEILLDTPLEEEQREFAENIQRSANAL 784

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L  +      +      + + + +  ++          +              +IL NL 
Sbjct: 785 LTVINDILDISKVESGRLDIEEFDHTVDFSEFGGNMTVIGDP-------GRVRQILTNLL 837

Query: 124 MVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKFTQIVDGNVE------ 173
             +      G        + ++E      F +K +G      +   ++     +      
Sbjct: 838 TNSIKFTHEGFVKLAVGVEKEDEDVIVVKFVVKDSGIGI-DEDVQQKLFQPFTQADSSTA 896

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       L       +              ++ 
Sbjct: 897 RRFGGTGLGLTISKNLVDLMGGSIGLASSLGAGTTAHFIIP 937


>gi|295093635|emb|CBK82726.1| Signal transduction histidine kinase [Coprococcus sp. ART55/1]
          Length = 454

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            K     + S  +     + + H++ +P+ +I    EL++     +  +           
Sbjct: 216 QKQHADIVKSSQMRQEFTANVSHELKTPLTSISGYSELIETGMATEADVHHFATEIHKNS 275

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------------TGE 107
            RL  +         +D       +E++    IA      ++                G 
Sbjct: 276 NRLLTLINDIIRLSELDVSEDAPLMEKIDLAVIARTATDMLAINAEKNSVTLSYDGSHGY 335

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A     + G V +SV+    + I  +K  G      E   +I
Sbjct: 336 IYANKMMMEELVYNLTDNAIRYNNKNGSVDVSVKAEDGKVILRVKDTGIGI-PKEHQERI 394

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +           +     +    V  +   N  +L  +        +   
Sbjct: 395 FERFYRVDKSRSKSTGGTGLGLAIVKHIVARNNAQLDMDSEPGKGTDIKVT 445


>gi|258514836|ref|YP_003191058.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778541|gb|ACV62435.1| multi-sensor hybrid histidine kinase [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 1267

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/250 (10%), Positives = 59/250 (23%), Gaps = 38/250 (15%)

Query: 2   AKNICFNLSSMDLVALLCSRI--------CHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L+     A   +R+         H+I +P+  I     LL +  +  + +  +
Sbjct: 490 RKKLEQALTEAKEEAEYSARVKSEFLANMSHEIRTPMNGIIGFCHLLMQTQLNSKQLNYL 549

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVSW- 104
                 +   L  +     ++      + +          I  +         +  +   
Sbjct: 550 TKIRSQSQHLLGIINDILDFSKLEAGKMSVEHVDFNLEEVIADLFYLLENQASQKGLELL 609

Query: 105 -------TGEKIDLSRERAKILLNLFMVAHASLPRGGKV-------TISVQDSKNENIFS 150
                              ++L+NL   A     +G                 +    FS
Sbjct: 610 ANVQKGVPAHLKGDPLRLKQVLVNLANNAIKFSDQGNIFLRVEKIDQSDSDSDQVIISFS 669

Query: 151 LKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           ++ NG      E+  ++ +                 +       L       +       
Sbjct: 670 VEDNGIGL-TEEQMQRLFNSFSQADSSTTRKYGGTGLGLAISKYLVELMGGEISVSSEYG 728

Query: 205 HNVVLSALLE 214
                S  L 
Sbjct: 729 VGSTFSFSLP 738


>gi|197106120|ref|YP_002131497.1| FOG: PAS/PAC domain protein [Phenylobacterium zucineum HLK1]
 gi|196479540|gb|ACG79068.1| FOG: PAS/PAC domain protein [Phenylobacterium zucineum HLK1]
          Length = 795

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 63/241 (26%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
           + +       +  + AL  L   + HD  + +  +    ++L     +       +  I 
Sbjct: 391 LQRAHDQLAQAQKMEALGKLTGGVAHDFNNLLMVVSGQAQMLRNRVGDDPRALRALDAIE 450

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GE 107
            S+       + +             + L D  + ++D IA      V            
Sbjct: 451 TSAKRGEDLTRHLLAFSRRQRLQPVPVALADRVEDLKDLIAASLPPTVRLVIDLSSELWP 510

Query: 108 KIDLSRERAKILLNLFMVAHASLP-----------RGGKVTISVQDSKNENIFSLKINGN 156
                 E    LLNL + A  ++P                +     + +    ++   G 
Sbjct: 511 VKVDPSELELSLLNLAVNARDAMPGGGVLAITAENVKLTRSAGQTLAGDFVAVTVSDTGV 570

Query: 157 LARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I D    +        +    V   A ++   +            +  L 
Sbjct: 571 GI-PDDILPRIFDPFFTTKEVSKGTGLGLSQVYGFAQQSGGEVQVRSELGRGTSFTFYLP 629

Query: 215 K 215
           +
Sbjct: 630 R 630


>gi|182413154|ref|YP_001818220.1| histidine kinase [Opitutus terrae PB90-1]
 gi|177840368|gb|ACB74620.1| histidine kinase [Opitutus terrae PB90-1]
          Length = 1278

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 60/239 (25%), Gaps = 27/239 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------LIR 54
            +        M+ +  L   I HD  + +  I    ELL E  +                +
Sbjct: 899  EAQLRQAQKMEAIGQLAGGIAHDFNNLLTVILGQGELLTEPELSATERDTAVRDIKSAAQ 958

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---VSWTGEKIDL 111
             +S      L F R       ++D    +  + +++   I     ++          +  
Sbjct: 959  RASNLTRQLLVFSRHQAMAPIALDLNEVVAGVIKLLRHMIGERVALESSLCEGPLATLAD 1018

Query: 112  SRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGN 156
                 ++LLNL + A  ++PR                 +              S+   G 
Sbjct: 1019 PGMLEQVLLNLAVNARDAMPRGGRLSLITARVTVGAEHRRQQPRAKPGEYVRVSVSDTGC 1078

Query: 157  LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                P                    +     + +  ++   +  E   +        L 
Sbjct: 1079 GIPEPVLAQMFEPFFTTKPAGKGTGLGLAISLGIVLQHHGWIDVETALERGTTFHVYLP 1137


>gi|163735013|ref|ZP_02142450.1| two-component hybrid sensor and regulator, putative [Roseobacter
           litoralis Och 149]
 gi|161391795|gb|EDQ16127.1| two-component hybrid sensor and regulator, putative [Roseobacter
           litoralis Och 149]
          Length = 1116

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/242 (8%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDL---VALLC-----SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           +     L         A L      + + H++ +P+ +I+   ++L+         +   
Sbjct: 646 ERTDLELQQAKEKAEAANLAKTRYMTGLSHELRTPLNSIYGFAQILERDEDMPARRRNSI 705

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------- 103
           ++   +   L  +         +++       +++                         
Sbjct: 706 ITIRRSSEHLAGLIEGLLDISRIEAGRLKISRDRINLRVFLQQVSSIFEEAAREKNLRFR 765

Query: 104 ------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                          +   +I++NL   A      G         ++      +   G  
Sbjct: 766 METSRVLPVWITFDEKRLRQIIINLLSNAIRYTDNGEVSMRIKYRNEVAV-IEVSDTGCG 824

Query: 158 ARFPEKFTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SAL 212
               E   +I +       +      +      LL       +  E  +    +     +
Sbjct: 825 I-REEDRARIWEPFERGSGTQAQGSGLGLTITKLLVEILGGDIELESTEGKGSLFRVRVM 883

Query: 213 LE 214
           L 
Sbjct: 884 LP 885


>gi|149275825|ref|ZP_01881970.1| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Pedobacter sp. BAL39]
 gi|149233253|gb|EDM38627.1| sensor for ctr capsule biosynthesis, probable histidine kinase
           acting on RcsB [Pedobacter sp. BAL39]
          Length = 462

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           L S I HD+ +P+  I   LELL        D   +E E+++    +       L + + 
Sbjct: 235 LMSIISHDLRTPLMNIKGYLELLNEDVLDSADRPFLEKELLKSTNNAVEMLSNLLHWSKS 294

Query: 70  AFGYT--GSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNL 122
                    VD  +       +  +              +    + +        ++ NL
Sbjct: 295 QMEGPAVHLVDVNLLSVLRSTLEMEKTHALKKDISLSYTIPDDLKLLADVDMLQLVVRNL 354

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTID 177
              A    P+ G++ +  +    E   ++  NGN     +K+ +I           +   
Sbjct: 355 ISNAVKFTPQCGQIHVDAKLLAEECKITVSDNGNGIPL-DKWDKIFSIKAEPAFGTNNEK 413

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +              R+  E            L 
Sbjct: 414 GVGLGLVLCKEYIERQGGRISFESKPGLGSRFYIHLP 450


>gi|148266281|ref|YP_001232987.1| histidine kinase [Geobacter uraniireducens Rf4]
 gi|146399781|gb|ABQ28414.1| histidine kinase [Geobacter uraniireducens Rf4]
          Length = 525

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 64/233 (27%), Gaps = 29/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMSAI 61
             M+ +  L   I HD  + + AI     L+     + + +             ++    
Sbjct: 150 QKMEAIGTLTGGIAHDFNNILTAIIGYGNLIQMQMDKSDPLLHYLVQLLAATDKATCLTK 209

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L + R         D    +  + +++   I+ +       T  K+ ++ +  +I   
Sbjct: 210 GLLTYSRKQPLNPCHADLNDIVKRVTKLLSRLISENIDFSSILTERKLCVTADSGQIEQV 269

Query: 122 LFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +      A  ++P                          +    + S+  +G        
Sbjct: 270 IMNLVTNARDAMPEGGTIIINTDVAELDDTFIRNQDYGHAGMYALISVSDSGVGMDKV-M 328

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +    +        +    V  +  ++   +  +   D+  V    L 
Sbjct: 329 MERIFEPFFTTKEVGRGTGLGLSIVYGIIKKHNGFIQVDSEPDNGSVFKVYLP 381


>gi|15601291|ref|NP_232922.1| sensor histidine kinase [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|121586504|ref|ZP_01676291.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|153819534|ref|ZP_01972201.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|153823671|ref|ZP_01976338.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|227812100|ref|YP_002812110.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229506298|ref|ZP_04395807.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae BX
           330286]
 gi|229509582|ref|ZP_04399064.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           B33]
 gi|229516597|ref|ZP_04406044.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           RC9]
 gi|229605849|ref|YP_002876553.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           MJ-1236]
 gi|254849692|ref|ZP_05239042.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|255746692|ref|ZP_05420639.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholera CIRS
           101]
 gi|262151218|ref|ZP_06028355.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           INDRE 91/1]
 gi|298499331|ref|ZP_07009137.1| sensor histidine kinase [Vibrio cholerae MAK 757]
 gi|9657938|gb|AAF96434.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121549329|gb|EAX59360.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|126509933|gb|EAZ72527.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|126518807|gb|EAZ76030.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|227011242|gb|ACP07453.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229346478|gb|EEO11449.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           RC9]
 gi|229353532|gb|EEO18470.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           B33]
 gi|229356649|gb|EEO21567.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae BX
           330286]
 gi|229372335|gb|ACQ62757.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           MJ-1236]
 gi|254845397|gb|EET23811.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|255736446|gb|EET91844.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholera CIRS
           101]
 gi|262030985|gb|EEY49612.1| osmosensitive K+ channel histidine kinase KdpD [Vibrio cholerae
           INDRE 91/1]
 gi|297541312|gb|EFH77363.1| sensor histidine kinase [Vibrio cholerae MAK 757]
          Length = 497

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 68/214 (31%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLA---- 70
           L + + HD+ +P+GAI  S   L +  +    +   +L+   +       + +       
Sbjct: 273 LLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLTSIAEQGERLNRSLTKLLDIT 332

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        V+    +G +   +   +   K    S        S    ++L+NL 
Sbjct: 333 RYTASALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIESQPMLVELDSLLIEQVLINLV 392

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHD 180
             A    PRG ++ I+    + +   ++  NG      E   +I D       +  D   
Sbjct: 393 ENAAKYTPRGSEIEIACAYQEQQFTLAVMDNGAGI-PDEALPRIFDRFYRVEGNHADGTG 451

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      ++   ++  +     +      +  + 
Sbjct: 452 LGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|330998758|ref|ZP_08322486.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Parasutterella excrementihominis YIT 11859]
 gi|329576255|gb|EGG57771.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Parasutterella excrementihominis YIT 11859]
          Length = 674

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
           A++    +    L   L     H++ +P+  +  + E L     +   ++   +L+  + 
Sbjct: 431 ARDATSEVQIDRLKDELIGIAAHELKTPLAGVRMAAECLVKTVQDPESKETAAELLESAD 490

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKIDLS 112
               +  +++ +A   TGS +       I+ +I           D    +  + +    +
Sbjct: 491 EMKDMISRWLDVAKLQTGSYEIHPEFCLIKPMIRKALKHFSGFKDFECSLEISPDAAAAN 550

Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARF---PEKF 164
            +     +I+ NL   A+     G    + +Q     +     ++ +G         + F
Sbjct: 551 VDKQAFMQIIQNLLSNAYKYRKEGSACRVKIQTRKLGDFLELMVEDDGIGVPESALDKIF 610

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    I    +  Y    L   +K ++          V +  L 
Sbjct: 611 DRFYQVRMDSARKIGGTGLGLYITKELVLLHKGKVTVASTLGEGTVFTLELP 662


>gi|309789904|ref|ZP_07684481.1| PAS sensor protein [Oscillochloris trichoides DG6]
 gi|308228036|gb|EFO81687.1| PAS sensor protein [Oscillochloris trichoides DG6]
          Length = 749

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 19/226 (8%), Positives = 53/226 (23%), Gaps = 23/226 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRL 64
           +  L +   + + H++ +P+ +I    E+L             E +  +R +S + +  +
Sbjct: 507 ADRLKSAFLATVSHELRTPLTSIIGYTEMLQRGLYGPLGERMGEPLGHMRTASGTLLRLI 566

Query: 65  KFMRLAFGY---------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
             +               T             Q     +     + +        +    
Sbjct: 567 TDILDFSRMEAGHLKVDLTPVEPLRTIRSVAGQFQPQILQRSLALDLDLPDHLPYIYANS 626

Query: 116 AKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            ++   L  +   ++    +  I+V      +    S++  G      E    I      
Sbjct: 627 MRLEQVLTNLIGNAIKFTDQGGITVSAHHHADRLRISVRDTGIGI-AHEHQDAIFLEFRR 685

Query: 174 -----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +       L       +               + 
Sbjct: 686 IEQIGRHAGGAGLGLAISRRLVELMGGTIGLHSTPGEGSTFFIDMP 731


>gi|298506437|gb|ADI85160.1| sensor histidine kinase response regulator, PAS, GAF and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 1004

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 62/239 (25%), Gaps = 29/239 (12%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIR------LS 56
                  M+ V  L   + HD  + +  I    E  LL     +     L         S
Sbjct: 627 QLMQAQKMESVGRLAGGVAHDFNNMLSVILGHTEMALLRMDPNQPTYASLREIDKAAQRS 686

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-- 114
           +      L F R        ++    +  +  ++   I  + R+Q         +  +  
Sbjct: 687 ADLTRQLLGFARQQTVSPKVLNLNESISGLLTMLHRLIGENIRLQWQPAANLWQVRMDSS 746

Query: 115 -RAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLA 158
              +I+ NL + AH ++                             +     +  NG+  
Sbjct: 747 QIDQIMANLCVNAHDAIADVGEIIIETGNCTFDERDGTIHPHGAVGDYVRIRVSDNGSGM 806

Query: 159 RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              E    I +    +        +    +  +  +N   +      D     S  L +
Sbjct: 807 -DKETRAHIFEPFFTTKEVGKGTGLGLATIYGIVKQNNGLIDVASEPDKGTTFSIYLPR 864


>gi|322420344|ref|YP_004199567.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126731|gb|ADW14291.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 872

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 66/242 (27%), Gaps = 33/242 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L +  L +L  L   I HD  + + +I  + EL    L       E +Q I  S++
Sbjct: 485 EQQLLHAQKLESLGVLAGGIAHDFNNILTSIIGNNELALMRLSPESPALENLQRIEASAV 544

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    + M            S+D    L ++  ++E  I+    ++ +   E   +  +
Sbjct: 545 RAADLARQMLAYSGKGKFVIESIDLNRLLKEMGHMLEVAISKRVILRYNLARELPAVEVD 604

Query: 115 RAKILLNLFM---VAHASLPRGGK-------------------VTISVQDSKNENIFSLK 152
             +I   +         ++                          I      +     + 
Sbjct: 605 ATQIRQIIMNLVINGSEAIGDRDGVIAISTGCLECKEEYLKEAWLIDPIPEGSYVAIEVS 664

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G          +I D    +      +    V+ +   +K  +              L
Sbjct: 665 DTGCGMDKATLS-RIFDPFFTTKFTGRGLGMAAVLGIVRSHKGAIKVYSEPGRGTTFKVL 723

Query: 213 LE 214
           L 
Sbjct: 724 LP 725


>gi|253572834|ref|ZP_04850233.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251837566|gb|EES65658.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 713

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 52/231 (22%), Gaps = 21/231 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLS 56
           MAK     ++S          I H++ +P+ AI     L+ +    D     +  +   S
Sbjct: 230 MAKRNEALIASRKKA---VHTITHELRTPLTAITGYAGLMRKDCNTDKTGTYIRNIQESS 286

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----------QVSWTG 106
                +    +       G          I  +          +                
Sbjct: 287 DRMREMLNTLLNFFRLDNGKEQPNFSACRISAITHTLETEFMPIAINKGLTLTIHCHKDA 346

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT- 165
                     +I  NL   A      G     +  D+       ++  G      E+   
Sbjct: 347 FVCTDKERILQIGNNLLSNAIKFTENGSVSLRADYDNGL-LKLIVEDTGTGMTEEEQQRV 405

Query: 166 --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  +  D   +    V  +       +  E         +  + 
Sbjct: 406 FGAFERLSNAAAKDGFGLGLSIVQRIVTMLGGTIRLESDKGKGSRFTVEIP 456


>gi|284037645|ref|YP_003387575.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816938|gb|ADB38776.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 679

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 73/233 (31%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           +AK    +    +L     +   H+  +P+  I +S  LL+      +     + +Q IR
Sbjct: 443 LAKEKQLS----ELKGRFVAMASHEFRTPLTTILSSAGLLELYQTSDQKDKRQKHIQRIR 498

Query: 55  LSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            +       L+                    D    + ++   + D + V + +++S + 
Sbjct: 499 QAVKQLNSILEEFLSSDKLTEGQVTVRPVLCDLPRLVNEVILDLGDTLKVQQTIRLSLSC 558

Query: 107 EKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
            +     E    KIL+NL   A      G  +T+      +    ++   G      +  
Sbjct: 559 PQPLWVDESLLRKILINLLSNAIKYSGPGSIITLDGSCKPHLLTLTVSDQGIGISAEDQL 618

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +  + I    +  + V         ++  E        ++  L 
Sbjct: 619 HLFERFFRASNVTNISGTGLGLHIVRQYVELMNGQISLESELHQGTRITLTLP 671


>gi|224539076|ref|ZP_03679615.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519321|gb|EEF88426.1| hypothetical protein BACCELL_03976 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 435

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 62/231 (26%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K       +  L     + + H+I +P+ AI     +L +     E  +   L + + 
Sbjct: 188 LRKAKDKAEEANRLKTAFLANMSHEIRTPLNAIVGFSSILADTEDIAEKKEFCNLINHNN 247

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + LK              ++ L   +    D ++      ++        +  +     
Sbjct: 248 ALLLKIVDDILDISKIEAGYIDLHPTWFCLSDLIMESATEYRMKAAGRLDIRIHKPGQGY 307

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                ++   +IL N    A       G + I+   ++      +   G      +    
Sbjct: 308 MAELDTKRVKQILNNFLSNALKHTQE-GYIDITYGVTEQGIEIKVTDTGCGIPQDKLPVI 366

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +  +      +       +A      +           +   L 
Sbjct: 367 FERFEKVDSFTQ--GVGLGLPICKSIAECMGGSIGLTSEAGVGTTVWVTLP 415


>gi|212702046|ref|ZP_03310174.1| hypothetical protein DESPIG_00048 [Desulfovibrio piger ATCC 29098]
 gi|212674561|gb|EEB35044.1| hypothetical protein DESPIG_00048 [Desulfovibrio piger ATCC 29098]
          Length = 573

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 18/226 (7%), Positives = 60/226 (26%), Gaps = 21/226 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIH----NSLELL------DEVGIEDEVMQLIRLSS 57
            +  L ++  L + + H++ +P+  I+      L+LL      +       +++ I  + 
Sbjct: 338 HNQKLSSIGRLAAGVAHEVNNPLAVINEKAGLGLDLLHMSGNFERKERLISLLEAIESTV 397

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLS 112
             A      +        +    + + ++       +          +   +     D+ 
Sbjct: 398 ERARGITHRLLGFARRMEANRQELSVPEVLTETMGFLERGAKNRGVTIGTDFAEGLPDIV 457

Query: 113 RERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
            +R ++      +   +L              Q +    +  +  NG             
Sbjct: 458 SDRGQLQQVFLNIMGNALDAVPDGGKVDIACSQTADGGLLVRVTDNGKGMSPEVIKHIFE 517

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     + +  +    +       +  +  +     +S  L 
Sbjct: 518 PFYSTKKEKGNGLGMFITYGIVRRLGGEITVDSTEGKGTTVSITLP 563


>gi|158334365|ref|YP_001515537.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
 gi|158304606|gb|ABW26223.1| serine/threonine protein kinase and signal transduction histidine
            kinase (STHK) with GAF and PAS/PAC sensor [Acaryochloris
            marina MBIC11017]
          Length = 3073

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 62/238 (26%), Gaps = 25/238 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59
            MA++     ++ +  +L  + + H++ +P+  I    ++L     + ++ ++ +      
Sbjct: 2596 MAESKEKADAANEAKSLFLANMSHELRTPLNGILGYAQILRRSESLSNKELEGVDTIYQC 2655

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGL----------------GDIEQVIEDFIAVDKRVQVS 103
                L  +      +      + L                    +  +  I  + +    
Sbjct: 2656 GSHLLNLINDILDISKIEALKLELTPKAANLPYLLQTVVEMCKVKADQKGIQFNYQPSSQ 2715

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLAR 159
               +     +   ++LLNL   A      G    I       + +    F +   G    
Sbjct: 2716 LPQQVEVDDKRLQQVLLNLLGNAVKFTDHGSVTFIVDVSPLSEQQVSISFRVIDTGVGIA 2775

Query: 160  FPEKFTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +           G+     +   +       +       +            S  +
Sbjct: 2776 EQDLVKLFQSFKQVGDQHKQAEGTGLGLAISQRIVRLMGSEIHVTSQPQQGSEFSFTI 2833


>gi|116332986|ref|YP_794513.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
 gi|116098333|gb|ABJ63482.1| Signal transduction histidine kinase [Lactobacillus brevis ATCC
           367]
          Length = 454

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 57/227 (25%), Gaps = 20/227 (8%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------QLIRL 55
               L          S   H++ +PI  I  +L+L++  G +   +         Q    
Sbjct: 226 QNGRLQRER---QFISDASHELRTPIATIRGNLKLIERRGKQHPEIIPESLGFIDQESLR 282

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                   L   R            I       +      +D+ +          +  + 
Sbjct: 283 MQHLIENLLHLSRANRAEISLHPVDIDPLVQSVIAHYQPLIDQPITYDGPATPTMVLADT 342

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD 169
               ++L  L   AH        + ++V         S+  +G        P  F +   
Sbjct: 343 DILHQVLTALLDNAHKYGAPDQSIDVTVAKQAQHVTLSVADHGPGISTADRPHIFERFYR 402

Query: 170 GNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      I+   +    V  L   +K  +       H       L 
Sbjct: 403 VDESRSNKIEGSGLGLAIVAQLVRLSKGTITITDNPPHGACFIISLP 449


>gi|148658128|ref|YP_001278333.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
 gi|148570238|gb|ABQ92383.1| multi-sensor hybrid histidine kinase [Roseiflexus sp. RS-1]
          Length = 1039

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 74/228 (32%), Gaps = 25/228 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIE-------DEVMQLIRLSSMSAII 62
            ++ V  L   I HD  + +  I  S +L L  +  +         + Q  R ++     
Sbjct: 665 RLESVGRLAGGIAHDFNNILTVISGSADLALAMMPPDSPAYADVQTIQQGARRAANLVRQ 724

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---IL 119
            L F R   G+  +VD+   +  +  ++   I  D R   +       +  +  +   ++
Sbjct: 725 LLAFARRQPGHPQTVDANEVIEGMLPLVRRLIGEDIRFVWAPAPYPCVIIIDPHQFEQVV 784

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-----------ENIFSLKINGNLARFPEKFTQIV 168
           +NL + A  ++P GG +TI+   ++                +++  G      E    I 
Sbjct: 785 MNLIVNARDAMPDGGALTITTSVTEMAAGDEDSAETPFVCITVEDTGVGM-DAEVMAHIF 843

Query: 169 DGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    +        +     + +  +    +  E            L 
Sbjct: 844 EPYFTTKAPGQGTGLGLATCLGIVQQYAGFIRVESEPGEGSRFEVFLP 891


>gi|83647612|ref|YP_436047.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83635655|gb|ABC31622.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 652

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 63/240 (26%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           M       L +       +   + + H++ +P+ AI    ELL       + +  +++  
Sbjct: 136 METERLVRLKAEAENRSKSEFLAHLSHELRTPLTAILGYTELLIAQNSIPDNLSHLQIVQ 195

Query: 58  MSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQ 101
            +    L  +                    V+    L D+  ++     +  + +     
Sbjct: 196 RNGQHLLSLLNDILDISKIEAGKLEMEFVRVNLQTYLADLYSLMAVSARDKNLQLRFIAD 255

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLA 158
           +              ++LLNL   A     +G  +       +    +  F +   G   
Sbjct: 256 MPLPENIETDPIRLRQVLLNLIGNAIKFTEQGEIIVRVQMIKEEEQEKIQFKVIDTGPGI 315

Query: 159 RFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +   ++     +         +   +       LA      +            +A+
Sbjct: 316 NQTD-QKRLFQPFTQAYANSIRRSEGAGLGLAISRQLAQRLGGDIRLSSQPGKGSEFTAI 374


>gi|74311220|ref|YP_309639.1| sensor protein KdpD [Shigella sonnei Ss046]
 gi|73854697|gb|AAZ87404.1| sensor for high-affinity potassium transport system [Shigella
           sonnei Ss046]
          Length = 894

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHFEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|332141178|ref|YP_004426916.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327551200|gb|AEA97918.1| putative two-component member protein [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1111

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 58/215 (26%), Gaps = 22/215 (10%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            + H+I +P+ AI    +L+    + DE    +   + SA   L  +             
Sbjct: 541 NMSHEIRTPMNAIIGFSDLMLGEALRDEQKSHLTTINRSARSLLHLLNDILDSAKLDKGK 600

Query: 81  IGLGDIEQVI----------EDFIAVDKRVQVSWTGE------KIDLSRERAKILLNLFM 124
           + L   + +I              A  K+V +    +         +     ++L NL  
Sbjct: 601 LDLDYRDFLIREELDLVVSTFWLEAKRKKVDLVLNVDASVADGYRGVPERMRQVLNNLIG 660

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSH 179
            A       GKV I+V+       F +   G      +        +     +       
Sbjct: 661 NAVKFT-HEGKVEIAVRSEGELVYFDVSDTGIGMTKAQLDNVFDPFSQADASMSRKYGGT 719

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L       +     +      +  L 
Sbjct: 720 GLGTTISKQLVELMGGNICATSEEGKGTTFTFRLP 754


>gi|325284497|ref|YP_004257036.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus proteolyticus MRP]
 gi|324316671|gb|ADY27782.1| integral membrane sensor signal transduction histidine kinase
           [Deinococcus proteolyticus MRP]
          Length = 371

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 68/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----Q 51
           +A N      +++ V      L   + H++ +P+ A+    + + +  +  E       +
Sbjct: 128 LAHNFNVMAGALEQVEQGRVELIGNVAHELRAPLAALRGYADAMQDGVMTPEHAAQSISR 187

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSW 104
            I              R+  G        I    + Q++ +  A       V  ++  + 
Sbjct: 188 EIGAMDRLVRDLSLVSRVEAGKVELHLKAIDPQGLLQIMRERFATPFEDKGVQLQITDAV 247

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
             +         ++L NL   A    P GGKV+++VQ       F+++  G         
Sbjct: 248 LPQIKADEERTLQVLTNLLSNALRHTPAGGKVSVTVQTEAALLKFNVQDTGTGIPAEHLP 307

Query: 163 -KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +                +       L       +          V S  L 
Sbjct: 308 RIFERFYRADPARSRNEGGSGVGLTIAKGLVEAMGGEMWVVSNVGQGSVFSFTLP 362


>gi|307316590|ref|ZP_07596033.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306897788|gb|EFN28531.1| integral membrane sensor hybrid histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 917

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 66/240 (27%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+   + +     +   + + H++ +P+ AI    E+L E   + E  +L+      A 
Sbjct: 410 AKSHAESANEAK--SRFLASMSHELRTPLNAIIGYSEMLIEEARDHEDEELVPDLDKIAS 467

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIE---------------QVIEDFIAVDKRVQVSWTG 106
                + L               ++                 V          +   +  
Sbjct: 468 AGRHLLSLINDILDLSKIEANKMEVFLETFSVADLLRDVAATVAPLMARNGNELTQDFET 527

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG------KVTISVQDSKNENIFSLKINGNLARF 160
           +  ++  ++ K+  NLF +   +           +V    +  ++  +F +   G     
Sbjct: 528 DLGEMHSDQTKLRQNLFNLLSNAAKFTNGGRVTLRVRREQRADRDWLVFQVTDTGIGM-S 586

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE+  ++ +                 +               +  E       V +  + 
Sbjct: 587 PEQQERLFNAFTQADASTTRNYGGTGLGLSITRSFCRMIGGVVTVESEVGKGSVFTIEVP 646


>gi|291523332|emb|CBK81625.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 672

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 63/246 (25%), Gaps = 35/246 (14%)

Query: 4   NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQ 51
                L    L A             + HDI +P+ AI    EL    L E       ++
Sbjct: 279 KQEEELREAKLKAECANKAKSSFLYNMSHDIRTPMNAIIGYAELASRHLQETDKLGRYLE 338

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQV 102
            +         +    + LA      V+    +          +    +   + ++ + +
Sbjct: 339 EIQICGKELLSMLGNVLDLARIENNKVEIECTVSNVHECFENCVIMFQQQAESKNQTLSL 398

Query: 103 SWTGEKIDLSRERAK---ILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKING 155
           +       +  +      + LN+   A             V     + ++     + I  
Sbjct: 399 TEQIMYPYVYMDAPHLSEVCLNIISNAIKYTNTGGRISCNVVQKSCEKEDWCNMIISITD 458

Query: 156 NLARFPEKFT-QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           N     E+F  +I +          S I+   I       L       +  +        
Sbjct: 459 NGIGMSEEFQKRIFETFERERNTTSSHIEGSGIGMGITKKLVELMDGTIEVKSKQGKGST 518

Query: 209 LSALLE 214
            +  + 
Sbjct: 519 FTVTIP 524


>gi|284165554|ref|YP_003403833.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284015209|gb|ADB61160.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 821

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 62/230 (26%), Gaps = 20/230 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSM 58
            + +  +   ++  A   S   HD+  P+  + + L+LL+      ++D+  + I  +  
Sbjct: 591 QRKLEKSNERLEQFAYAAS---HDLQEPLRMVSSYLQLLESRYSDELDDDGEEFIEFAVD 647

Query: 59  SAIIRLKFMR---------LAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEK 108
            A    K +                  VD    +    E +       D  +        
Sbjct: 648 GAERMRKMIDGLLAYSRVDTQGEPFEPVDLDTVVDAVCEDLQMKIEETDAEITAESLPRV 707

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE---KF 164
                +  ++  NL   A               +    + I S++ NG      +    F
Sbjct: 708 RGDESQIQQVFQNLVSNALEYSGDEPPQVEITAERARSKWIVSVEDNGIGIDPDDQDRVF 767

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +     D   I       +   ++  +  +         S  L 
Sbjct: 768 EVFERLHSRDKYDGTGIGLALCQRIIERHEGTIWIDSEPGEGTTFSFALP 817


>gi|256838505|ref|ZP_05544015.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739424|gb|EEU52748.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 769

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 56/237 (23%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIED----EVM 50
           + +    ++   +  AL+ SR      I H++ +P+ AI     L+ +    D     + 
Sbjct: 279 LIEQQKQSIKQNE--ALIASRKKAVHTITHELRTPLTAITGYAGLMRKDCNTDKTGTYIR 336

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------- 100
            +   S     +    +       G          I  +          +          
Sbjct: 337 NIQESSDRMREMLNTLLNFFRLDNGKEQPNFSACRISAITHTLETEFMPIAINKGLTLTI 396

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           +I  NL   A      G     +  D+       ++  G     
Sbjct: 397 HCHKDAFVCTDKERILQIGNNLLSNAIKFTENGSVSLRADYDNGL-LKLIVEDTGTGMTE 455

Query: 161 PEKFT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E+          +  +  D   +    V  +       +  E         +  + 
Sbjct: 456 EEQQRVFGAFERLSNAAAKDGFGLGLSIVQRIVTMLGGTIRLESDKGKGSRFTVEIP 512


>gi|226315497|ref|YP_002775393.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
 gi|226098447|dbj|BAH46889.1| two-component sensor histidine kinase [Brevibacillus brevis NBRC
           100599]
          Length = 607

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 21/222 (9%), Positives = 57/222 (25%), Gaps = 26/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H++ +P+  I + +E L     +E  +    +++    +   I  +  +     
Sbjct: 379 FVANVSHELRTPLTTIKSYVEALLDGAVEEPELSQRFLKVTSSETERMIRLVNDLLQLSR 438

Query: 73  Y-------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----KIDLSRERAKILL 120
           +             L  L           +  + VQ+S                  ++L 
Sbjct: 439 FDSQGVRLHCKEADLNRLLHYAADRFSMFSEQQEVQLSLDMPSKLPLVYIDLDAINQVLD 498

Query: 121 NLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ 172
           NL   A    P+     +       +     S+   G      +   +I +         
Sbjct: 499 NLLSNAIKYTPQGGTVVLMAKENHKQRRVQISITDTGIGIPSRDLK-RIFERFYRVDKAR 557

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       L   +   +      +    ++  + 
Sbjct: 558 SRGQGGTGLGLAIARELVQAHGADIEITSEWNVGTTVTFWVP 599


>gi|218898272|ref|YP_002446683.1| sensor histidine kinase [Bacillus cereus G9842]
 gi|218541454|gb|ACK93848.1| sensor histidine kinase [Bacillus cereus G9842]
          Length = 436

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 64/236 (27%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQKNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S               K     F      +    + +   ++    ++D  + +  
Sbjct: 256 SRKISTLISQLLLLARADQGKHNTFQFECINMSELTEIVVEELSLMVQEASIDITINIEK 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESKLGEGSTFTFKLP 431


>gi|162455108|ref|YP_001617475.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
 gi|161165690|emb|CAN96995.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
           ce 56']
          Length = 714

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 62/224 (27%), Gaps = 22/224 (9%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            L     + + H++ +P+ AI    +LL   G  DE++     +          +     
Sbjct: 328 RLKDEFLALLSHELRTPLTAILGWSQLLRLRGPSDEILGRALGTIERNARAQSKLVDDLL 387

Query: 73  YTGS---------VDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKIDLSRERA 116
                        V+ +     +E ++E      K   +           + +       
Sbjct: 388 DMSRIIGGRLSLDVEVVDLTEMLETLLESAEPAAKAKGIRLELSVESAGEQVMGDPNRLQ 447

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-----FTQIVDGN 171
           +I+ NL   A     +GG+V +S++        ++   G               +  D +
Sbjct: 448 QIVWNLVSNAMKFTRQGGQVKVSLRREGTYARLAVSDTGIGIAPEFLPYVFEQFRQADAS 507

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                    +    V  L   +   +       D     +  L 
Sbjct: 508 TTREYGGLGLGLSIVQHLVELHGGTVEASSAGKDQGASFTVKLP 551


>gi|149190210|ref|ZP_01868485.1| sensor protein LuxQ [Vibrio shilonii AK1]
 gi|148835957|gb|EDL52919.1| sensor protein LuxQ [Vibrio shilonii AK1]
          Length = 864

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 53/230 (23%), Gaps = 26/230 (11%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           S        +++ H+I +P+  I    +LL + G + +  + I +   S    L  +   
Sbjct: 479 SAKARTDFLAKMSHEIRTPLNGILGISQLLKQGGDDGKYQEQIEVLCNSGEHLLAVLNDI 538

Query: 71  FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----------------LSRE 114
             ++   +    L       ++ I   + +       K                      
Sbjct: 539 LDFSKIENGSFKLEKHNFKFKEVITAIEGIYKPLCDHKNIELVIQNGLNENTALNTDQVR 598

Query: 115 RAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             +IL NL   A     +G                N     ++  G      +       
Sbjct: 599 LNQILFNLVSNAIKFTHKGHVKVSFALKTTDSTKTNWLTIQVEDTGIGILSNQIQQVFDP 658

Query: 170 GNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +    V  L      ++               L 
Sbjct: 659 FVQSEATLTREYGGSGLGLAIVKNLVTIFDGQINVSSEVGRGTRFEVRLP 708


>gi|167034928|ref|YP_001670159.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
 gi|166861416|gb|ABY99823.1| PAS/PAC sensor signal transduction histidine kinase [Pseudomonas
           putida GB-1]
          Length = 405

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 15/227 (6%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
            +          L +L  + + + H I +P+ A       L +           R ++  
Sbjct: 170 RRLQDQLARHERLSSLGRMVASLAHQIRTPLSAAMLYASHLADDEPALSAETRQRFAATL 229

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK-- 117
                +               + LGD       F A+ +  Q    G  +    +     
Sbjct: 230 KERLHELEHQVRDMLVFARGELPLGDRVTPKALFQALQQAAQAHVQGHTVRWQCDSHLGE 289

Query: 118 ----------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                      LLNL   A  +     ++ + +   +      +   G+     +   ++
Sbjct: 290 LLCNRDTLVGALLNLIENALQASDGPARLKVHLYRRECSLHLCVSDAGSGI-DADLLGRL 348

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  + +      +    V  +   ++  +           +   L 
Sbjct: 349 GEPFLTTKATGTGLGLAVVKAVVRAHQGTINLRSKVGRGTCVRVELP 395


>gi|118594848|ref|ZP_01552195.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
 gi|118440626|gb|EAV47253.1| hypothetical protein MB2181_04230 [Methylophilales bacterium
           HTCC2181]
          Length = 875

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 21/236 (8%), Positives = 58/236 (24%), Gaps = 27/236 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +       +  + +   + + H+I +P+  I     L  +  ++      ++    +   
Sbjct: 133 QAKQLAEDAAKMKSEFLANMSHEIRTPMNGIIGMSHLALKTDLDPRQRDYVKKIQQAGKH 192

Query: 63  RLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDK---------RVQVSWTG 106
            L  +     ++          +    + ++   I + I                     
Sbjct: 193 LLGIINDILDFSKIEAGKLSIEEITFDIDEMMSNIANMIGQKCSEKNLELIFHFPQDLPH 252

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPE 162
           + I      ++IL+N    A     +G  +         D      F++   G      E
Sbjct: 253 KLIGDPLRLSQILINYGNNAIKFTEKGEVIISAEILERDDEGIFIKFNVSDTGIGL-TKE 311

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           + +++                   +       LA      +  E            
Sbjct: 312 QKSKLFQSFQQADTSTSRKFGGTGLGLAIAKQLAGLMGGEVGVESEYGKGSTFWFT 367


>gi|117622661|ref|YP_851574.1| phosphate regulon sensor protein [Escherichia coli APEC O1]
 gi|115511785|gb|ABI99859.1| phosphate regulon sensor protein PhoR [Escherichia coli APEC O1]
 gi|323952989|gb|EGB48857.1| phosphate regulon sensor kinase PhoR [Escherichia coli H252]
          Length = 431

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|91974848|ref|YP_567507.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris BisB5]
 gi|91681304|gb|ABE37606.1| signal transduction histidine kinase [Rhodopseudomonas palustris
           BisB5]
          Length = 563

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 65/246 (26%), Gaps = 35/246 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  ++   + +++      + + H++ +P+ ++ +++E L     +    +L+ +     
Sbjct: 319 MTDSLYNRIEAIE---RFAADVSHELKNPLTSLRSAVETLPLAKNDKSRARLLAVIEHDV 375

Query: 61  IIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-------QV 102
               +              L       VD    L  +  V  +    +  V         
Sbjct: 376 KRLDRLISDISDASRLDAELQRQDAAPVDLRRLLTTLTLVANETRLGNNAVVEVRFEGPA 435

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           S             +++ NL   A +    GGKV I  +  K E    +  +G   R   
Sbjct: 436 SDPFSVPGHDSRLGQVISNLLSNAQSFSHPGGKVQIVCRRRKTEIEIVVDDDGPGIRDDA 495

Query: 163 KFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNVV 208
                     +           +       +   +  ++  E                  
Sbjct: 496 FEKIFERFYTDRPHQGFGQNSGLGLSISKQIVEAHGGKIRAENRPGPRDADGEPTSAGAR 555

Query: 209 LSALLE 214
               L 
Sbjct: 556 FVVRLP 561


>gi|39656353|gb|AAR29899.1| putative histidine kinase NIK1p [Cochliobolus heterostrophus]
          Length = 1239

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 728 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 787

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 788 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 847

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
           +     +  S    +I+LNL   A                             F++   G
Sbjct: 848 TVPDYVVGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQEQDCGPDHYVFQFAVSDTG 907

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 908 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 967

Query: 211 AL 212
             
Sbjct: 968 FT 969


>gi|37527863|ref|NP_931208.1| aerobic respiration control sensor protein ArcB [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787299|emb|CAE16380.1| aerobic respiration control sensor protein [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 781

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 51/216 (23%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E    ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTSEQNNYLKTIHVSAITLGNIFNDIIEMDKIERR 347

Query: 80  LIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKILLNLF 123
            + + +       F++                     ++      +       +IL NL 
Sbjct: 348 KVQIDNQPIDFTGFMSDLENLSGLLVQPKDIKFVMNPELPLPARIMTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        +     +F +   G      E                     
Sbjct: 408 GNAVKFTQKGEITVRIWYEEGERLLFEVTDTGIGIPHDELEKIFAMYYQVKGSHGGCPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      ++ E         +  +
Sbjct: 468 GTGIGLAVSKRLAQSMGGDIVVESEPGQGSRFTLSI 503


>gi|327312949|ref|YP_004328386.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Prevotella denticola F0289]
 gi|326946295|gb|AEA22180.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola F0289]
          Length = 896

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 57/230 (24%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M ++I    ++  L     + I H++ +P+  I + +E +          + +       
Sbjct: 379 MRRHIEEEATTAKL--QFFTNISHELRTPLTLIADPVEYIIHDPNLSPQQRNMLQIVQRN 436

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------------RVQVSWT 105
           +  L  +         + +      +                           ++ V   
Sbjct: 437 VAVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHITLQLSVPSA 496

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  +I  NL   A    P GG +  +     ++    +  NG      +   
Sbjct: 497 LPMRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADKVKIMVSDNGCGIAQNDLPY 556

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           I    V   A  +   +  E  +      +  + 
Sbjct: 557 VFDRFYQAGNAGHGTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVWMP 606


>gi|308176318|ref|YP_003915724.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
 gi|307743781|emb|CBT74753.1| signal transduction histidine kinase [Arthrobacter arilaitensis
           Re117]
          Length = 401

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A +      +  +     + + H++ +P+GAI    E + E   + + ++         
Sbjct: 134 LADDRTEITRTEAMRNDFVANVSHELKTPVGAIGLLAEAITEAADDPKAVRRFSTRMDKE 193

Query: 61  IIRLKFMRLAFGYTGSVD---------------SLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             RL  +         +                 +    D   +I +   +   V     
Sbjct: 194 SRRLAALVQDIIELSRLQASDAIVQGQEVNVDSVVAEAVDRNHLIAEEKGITITVGGHLD 253

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +  +      + NL   A    P    V + ++        S+   G      E   
Sbjct: 254 EPILGDADLLMTAIRNLIDNAVRYSPENTTVGVGIRQRDGYAQISVTDQGPGISAEE-QE 312

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +    V  +   +   +       H    +  L 
Sbjct: 313 RVFERFYRVDSARSRQTGGTGLGLSIVKHVLANHGGEVSLWSQPGHGSTFTIRLP 367


>gi|302343425|ref|YP_003807954.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
 gi|301640038|gb|ADK85360.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM
           2075]
          Length = 847

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 62/244 (25%), Gaps = 34/244 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           M   I     +  + AL  L   + HD  + + A+    EL    L E       ++ + 
Sbjct: 460 MESRIR---QAQKMEALGSLAGGVAHDFNNILNAVIGFTELTLRELGEQETPKAYLKHVL 516

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
            +   A   ++ +             I +  + + +   +       +       +    
Sbjct: 517 QAGRRASELVRQILTFSRGGEPEKKPIHVAIVVKEVLKLLRASLPAGIEIKQNIQNADEL 576

Query: 111 ---LSRERAKILLNLFMVAHASL---------------PRGGKVTISVQDSKNENIFSLK 152
                 +  ++++NL   A  ++                R  ++ ++           + 
Sbjct: 577 VLADPSQIHQVMMNLCANAAQAMGESGLLTVELRKVTLGRPLELDMASLPPGPYVQLVVA 636

Query: 153 INGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG          +I +    +        +    V  +       +  +          
Sbjct: 637 DNGPGVEPAHIG-RIFEPYFSTKSASGGTGLGLAVVHGIVKGLDGAIDVKSAPGAGCQFR 695

Query: 211 ALLE 214
             L 
Sbjct: 696 VFLP 699


>gi|268609962|ref|ZP_06143689.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus flavefaciens FD-1]
          Length = 468

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 26/235 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQ-------- 51
           MA  +    ++  +     S + H++ +P+ AI    E L+ + G   + M+        
Sbjct: 234 MADELS---TAEAMKNEFISSVSHELRTPLTAIKGWAETLMLDGGTSPDTMKKGVGVIVN 290

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTG 106
                       L F R+  G+     + + +       +    E      K +      
Sbjct: 291 ETERLQQMVEELLDFSRMQNGHFTLQSATMDILAELGDAVLIYSEKARKETKEIIYDEPE 350

Query: 107 EKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
               +  ++    ++ +N+   A      G ++TI   +S +  + S++  G   +  + 
Sbjct: 351 MLPFVFGDKNRIRQVFINVIDNAVKYSSAGDRITIKAYESGDNVVVSVRDTGVGIKQSDL 410

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
               T+    N         I       +   +   L  +   +     ++  L 
Sbjct: 411 AKVKTKFYKANHTRR--GSGIGLAVADEIISMHGGTLSIDSEGEGLGTTVTITLP 463


>gi|239908525|ref|YP_002955267.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239798392|dbj|BAH77381.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 669

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 62/234 (26%), Gaps = 31/234 (13%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  + +   + + H+I +P+ AI    +LL    +  +  + +     +    L  +  
Sbjct: 283 EASRMKSAFLANMSHEIRTPLNAIMGLSQLLLRANLPPQQRECVETMRAAGEGLLVILND 342

Query: 70  AFGYTG-----------SVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSR 113
              ++             +D    L ++ +V+                 S     +    
Sbjct: 343 ILDFSRIEMGRLEIRPAPMDIDRLLEEVRRVMAQAADQQGLTLAIERDPSLPRVVLCDPV 402

Query: 114 ERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
              +ILLNL   A    P                 +      F++   G     PE   +
Sbjct: 403 RLKQILLNLLSNAIKFTPSGRVTLSARRATANLGHEGPPRVTFAVHDTGPGI-TPEVRER 461

Query: 167 IVDGNVE------STIDSHDIQFYYVILLAHENKIR-LLPEIIDDHNVVLSALL 213
           I +  V+             +       L        L  +       V S  L
Sbjct: 462 IFEPFVQTDDAVARNPGGTGLGLSISNRLVELLGGSGLELDTSPGRGSVFSFTL 515


>gi|283797520|ref|ZP_06346673.1| sensor histidine kinase [Clostridium sp. M62/1]
 gi|291074889|gb|EFE12253.1| sensor histidine kinase [Clostridium sp. M62/1]
          Length = 474

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 65/231 (28%), Gaps = 20/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIH--------NSLELLDEVGIEDEVMQL 52
           M   +  +  +        S + H++ +PI  I            E  D+      ++  
Sbjct: 234 MLARLQASFEAER---QFSSDVSHELRTPIAVIRSQCEFALSGQAEEGDKEEAFHAILTQ 290

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQVSWTGEKI 109
               +      L   R   G        +    L        +  A +  V ++W   + 
Sbjct: 291 SERMNAIVSQLLLLSRAENGKFIPKREPVDFGTLCSFICEDLEASAGENHVSLTWETGEA 350

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +  +   ++  +      A      GG+V +  +        +++  G   +  +    
Sbjct: 351 QVVGDETLLIRMVTNLVTNAIRYNREGGRVRVVTERKNGSVFLTVQDTGIGIKKEDLEKI 410

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +   + +   +    V  +A  +   +  E +       +  L 
Sbjct: 411 FNRFYRADASRSTEGTGLGLSMVKWIAGIHGGSVRAESVYGVGSAFTVELP 461


>gi|226326092|ref|ZP_03801610.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758]
 gi|225205634|gb|EEG87988.1| hypothetical protein COPCOM_03910 [Coprococcus comes ATCC 27758]
          Length = 394

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 65/240 (27%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           + K+      + +        + HDI +P+ AI    +LL    D      E +  I+ S
Sbjct: 3   LKKSAEQAREASEAKTRFLFNMSHDIRTPMNAIIGFSDLLGKNLDNEEKVREYLGKIKSS 62

Query: 57  SMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               +  +               L        +    +  + +       +   +  +  
Sbjct: 63  GNILMTIIDQVLEVARIESGTSILKTEAANLSELFYSVNTVLESDIQMKGIHCSIDTNVQ 122

Query: 106 GEKIDLSRERAK-ILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLAR 159
            +     + + + I LN+   A    P G  + +++ ++         +F  +  G    
Sbjct: 123 HKYAFCDKTKLQEIYLNIMSNAIKYTPDGHAIHVTINETNFDDKKARYVFVCEDTGIGMA 182

Query: 160 FPEKFTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    + + E       +    +    V         R+  E         +  + 
Sbjct: 183 SEYLPHIFDEFSREHTATENKVSGTGLGLSIVKSFVELMNGRIHVESKPGKGTKFTVEIP 242


>gi|153213464|ref|ZP_01948775.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
 gi|124115928|gb|EAY34748.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 1587]
          Length = 1331

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|104780548|ref|YP_607046.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
 gi|95109535|emb|CAK14236.1| GacS sensor kinase protein [Pseudomonas entomophila L48]
          Length = 918

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 274 MARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSA 331

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      V    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDT 391

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ +       +   S++  G     
Sbjct: 392 PLSLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDDQDDTVQLRISVQDTGIGLSP 451

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +  T     +              +       L  +    +  +           S  L
Sbjct: 452 QDVRTLFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNL 511

Query: 214 EK 215
            +
Sbjct: 512 PR 513


>gi|90419634|ref|ZP_01227544.1| nitrogen regulation protein NTRB [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90336571|gb|EAS50312.1| nitrogen regulation protein NTRB [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 380

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/222 (10%), Positives = 63/222 (28%), Gaps = 27/222 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L + + H+I +P+  I  + +LL      ++  +   + +              F     
Sbjct: 142 LAAMLAHEIRNPLSGIKGAAQLLATSASDEDRSLTRLIQEESDRIVKLVDRMEVFSDQRP 201

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP 131
               +V+    L  ++ +    +A   ++   +      +   R +++     +   +  
Sbjct: 202 IERSAVNIHSVLEHVKTLARSGVARKIKITELYDPSLPPVFANRDQLVQIFLNLVKNAAE 261

Query: 132 RGGKV-------------------TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
             G                       +         F+++ NG      +    I D  V
Sbjct: 262 AVGDREGGEIRLITAFKPGVRLSVPGTRDRVTLPLEFTVEDNGAGI-PDDIREHIFDPFV 320

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  +  ++   +  E  + H      L+ 
Sbjct: 321 TTKPSGSGLGLALVAKIVGDHGGVIECESHEGH-TSFRILMP 361


>gi|89902539|ref|YP_525010.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
 gi|89347276|gb|ABD71479.1| periplasmic sensor signal transduction histidine kinase [Rhodoferax
           ferrireducens T118]
          Length = 920

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 66/242 (27%), Gaps = 28/242 (11%)

Query: 2   AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVM 50
                   ++  L +L        S + H++ +P+ +I    ELL +          + +
Sbjct: 663 RATAELRQANEQLKSLDRLKDDFMSSVTHELRTPLTSIRALAELLRDDPRIALAQRRQFI 722

Query: 51  QLIRLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
           ++I   +      +  +                           +    ++  +     +
Sbjct: 723 EIIVSETERLSRLVNQVLDMAKIESGHAEWHTAEVDMRALVSQAVSTTAELFRERQIAVE 782

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNL 157
                     +       +++LNL   A   +P  GG+V +S+    +    ++  NG  
Sbjct: 783 VALPEQVPTLMADPDRLMQVMLNLLSNAAKFVPLPGGRVRVSLSSDDSGVTVAVSDNGPG 842

Query: 158 ARFPE---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +    F +   G   +       +       +      RL  E            L
Sbjct: 843 VAAEQQALIFDRFRQGGDAANRPQGTGLGLPISRQIVEHFGGRLWLESGLQQGARFLFHL 902

Query: 214 EK 215
            +
Sbjct: 903 PR 904


>gi|319786933|ref|YP_004146408.1| response regulator receiver sensor hybrid histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465445|gb|ADV27177.1| response regulator receiver sensor hybrid histidine kinase
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 503

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 73/223 (32%), Gaps = 11/223 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-------VMQLIR 54
           A+        ++ ++LL + + HD+ + +  +    +L+ +   +         V +  R
Sbjct: 140 AERELMRTQRLESLSLLAAGLSHDLRNILQPLLIVPDLIAQRSDDPRLKQLAAVVAECGR 199

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDL 111
                A   L F+R +               +E +++  +  + + +        E    
Sbjct: 200 RGHEMAESMLSFVRGSRRAAERFRVADLFHAVELLLKGSLPRNVQFERRLEAADAELHGN 259

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             E  + LLNL + A  ++P GG++ +  +    + + ++  +G          Q+    
Sbjct: 260 YTELQQCLLNLCLNAVQAMPDGGRLELVGRLEGEQVVLTVADSGVGMDQRTL-EQLFTPF 318

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  D   +       +      ++    +          L 
Sbjct: 319 FTTKSDGTGLGLVSCRRIVEGLGGQISVHSVPGEGTRFDVRLP 361


>gi|293572889|ref|ZP_06683839.1| two component sensor kinase [Enterococcus faecium E980]
 gi|291607017|gb|EFF36389.1| two component sensor kinase [Enterococcus faecium E980]
          Length = 286

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           + K+    +  ++    L     S + H+  +P+  I   ++LL      +   +  + +
Sbjct: 50  LYKDFNVMVQELNSIETLRNDFVSSVSHEFKTPLATIQGYVQLLQAPNLSDEECQIFLYR 109

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAVDKRVQVS 103
           +I   +  + +    ++L       +                I  +   +      + + 
Sbjct: 110 IIESITQLSQLTENILKLNKLENQRIQLEKKEYRLDEQIREVIVFLQPKWEKEQLELDIE 169

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                   + E   ++ LN+   A       G++ I + ++  E +  +  +G       
Sbjct: 170 LAAVNYTGNEEFLYQVWLNIMDNAIKYNQVNGQIHIKLFEAATEIVLEVTDSGVGMNEET 229

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+    I  + +    V  +   +  R+    I+         L K
Sbjct: 230 RDRMFEKFYQGDTSRQISGNGLGLSLVKKILELHDGRIDYSSIEGVGTTAMIRLSK 285


>gi|270262775|ref|ZP_06191046.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270043459|gb|EFA16552.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 956

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 67/221 (30%), Gaps = 24/221 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++  + + H++ +P+  I  +L+LL    +   V +L+   + S+ + LK +     ++ 
Sbjct: 473 SMFLATVSHELRTPLYGIIGNLDLLQTKALPQGVDRLVNAMNNSSGLLLKIISDILDFSK 532

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +   E    + I                     ++ +             ++L
Sbjct: 533 IESEQLKIEPREFSCLEVITHIAGNYLPLVVKKRLGLYCFIEQNVPERISGDPVRLQQVL 592

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE------ 173
            NL   A       G + + V    +   FS++  G      E   ++ D   +      
Sbjct: 593 SNLLNNAIKFTDT-GCIILQVCTRSSYLEFSVRDTGVGIPEKEIT-RLFDPFFQVGSGVQ 650

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       L +     +  E       + +  + 
Sbjct: 651 RHFQGTGLGLAICEKLINMMDGDIAVESEPGLGSLFTIRIP 691


>gi|262165943|ref|ZP_06033680.1| sensor histidine kinase [Vibrio mimicus VM223]
 gi|262025659|gb|EEY44327.1| sensor histidine kinase [Vibrio mimicus VM223]
          Length = 733

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/237 (8%), Positives = 57/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 340 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTVKQRQHLTSLYESG 399

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
              +  +     Y+                   +G I+ +                ++  
Sbjct: 400 EHMMYLLNEILDYSKIEQGKFELDYSPFPLRSIIGSIKSIYSSLCFEKGLQFQLHSEIID 459

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
           T           +I+ NL   A     +G             +      ++ +G      
Sbjct: 460 TRWYYGDKARLRQIIFNLLSNAVKFTEQGFVSVGLSEENIGDEYFLTIKVQDSGIGI-PQ 518

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +   +I                   +    V  +A      +  +            
Sbjct: 519 DALDRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAELMSGAVSVQSEVGQGTCFEVR 575


>gi|239993253|ref|ZP_04713777.1| putative signal transduction histidine kinase two-component system
           with Protein-glutamate methylesterase domain
           [Alteromonas macleodii ATCC 27126]
          Length = 938

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 51/220 (23%), Gaps = 22/220 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
               + + H+I +P+  I  S EL+ E  + + V    +  S SA   L  +     ++ 
Sbjct: 577 TQFLANMSHEIRTPMNGIIGSCELMLENELPENVSARAKTISRSASNLLIILDSILDWSK 636

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA----------------KIL 119
                +        I + +     +       K                        +I+
Sbjct: 637 IESGKMLTDIQSCAIRELLEASCDLYRHAAQVKGYDIALYINQGVPNALNIDAGKVSQII 696

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174
            NL   A      G          +     S+   G      +           D +   
Sbjct: 697 NNLLSNAIKFTSDGVVTVNVSYAHQG-LKISVSDTGIGIAPNKLRLIFDKFEQADPSTTR 755

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       L       L  E         +  + 
Sbjct: 756 NFGGTGLGLAISKGLVELLGGELYVESELGKGTSFTFHIP 795


>gi|220911624|ref|YP_002486933.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219858502|gb|ACL38844.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 422

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 64/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           +A +      + ++     + + H++ +P+GAI    E L+     E  V +  +     
Sbjct: 138 LADDRTEITRTEEIRNDFVANVSHELKTPVGAISLLAEALESSADDEMAVRRFAKRMHKE 197

Query: 60  AIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      ++     +             VD    + +     +          V     +
Sbjct: 198 SGRLAALVQDIIELSRLQGASVVQQGGPVDVNAVIAEAVDRSQLPAESKNITIVVGGRTE 257

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  ++  ++  L      A    P   +V I V+  +     S+   G      E   
Sbjct: 258 EKVFGDQDLLVTALRNLIDNAIRYSPPNTRVGIGVRSKEGLVSISVTDQGEGL-SAEDQE 316

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +    V  +A  +   +            +  L 
Sbjct: 317 RVFERFYRVDAARSRHTGGTGLGLSIVKHVASNHGGEVTLWSQPGQGSTFTLRLP 371


>gi|126730008|ref|ZP_01745820.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
 gi|126709388|gb|EBA08442.1| cytoplasmic sensor hybrid histidine kinase [Sagittula stellata
           E-37]
          Length = 841

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 58/238 (24%), Gaps = 28/238 (11%)

Query: 3   KNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           K       + +    A L   + H+I +P+  +    +LL E  + DE          S 
Sbjct: 320 KEATIRAEAANRAKSAFLA-NMSHEIRTPMNGVVGMADLLRETELNDEQKLYADTIRSSG 378

Query: 61  IIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
              L  +     Y               D    + D+  +++          +      +
Sbjct: 379 EALLVIINDILDYSKIEAEKLVLNPEPFDLERAIHDVVMLLQPTARDKDITLLVDYDMFL 438

Query: 110 DLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
                       +IL NL   A     +G  +   V   ++        +++  G     
Sbjct: 439 PTHFVGDPGRVRQILTNLVGNAVKFTVQGYVLVRVVGVMEDGGSTAVHITVEDTGIGIPA 498

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +      + N          +   +       L       +  E            +
Sbjct: 499 DKVEHVFGEFNQVEDERNRKFEGTGLGLAITRRLVELMGGEVWVESEPGRGSFFGLRI 556


>gi|153007023|ref|YP_001381348.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
 gi|152030596|gb|ABS28364.1| histidine kinase [Anaeromyxobacter sp. Fw109-5]
          Length = 526

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 56/214 (26%), Gaps = 19/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------LIRLSSMSAIIRLKFMRL 69
           L   + HD+ +P+  +    +LL   G E +  Q          R             RL
Sbjct: 310 LMRAVSHDLRNPLQIVLLKAQLLGRGGKEGDAAQKGARAILAAARRMERMLRDLADSARL 369

Query: 70  A-----FGYTGSVDSLIGLGDIEQVIEDFIA--VDKRVQVSWTGEKIDLSRERAKILLNL 122
                       VD    LG++  + +        +          +       +IL+NL
Sbjct: 370 EAGALLQLQRAPVDVRAFLGEVLDLTQGVFDPARLELAVPDTLPAVLADPDRLDRILVNL 429

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF--PEKFTQIVDGNVESTIDSHD 180
              A       G V +           S+   G        E+  Q          +   
Sbjct: 430 VGNALKYSD--GPVAVRAALDGGFVRISVADQGPGIAPADQERLFQRYYRGPRHDGEGLG 487

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  Y V  L   +  R+  E         S  L 
Sbjct: 488 LGLYIVRRLVEAHGGRVEVESAPGKGSTFSFTLP 521


>gi|159898432|ref|YP_001544679.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159891471|gb|ABX04551.1| PAS/PAC sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 487

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 59/215 (27%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           + I HD+ +P+  I  S +LL          +  +  ++     +     ++ L      
Sbjct: 268 ATIVHDLKNPLTTIRGSADLLLRRAKTENRSERELNRLQSIIAQSDRMRDYLSLLVDVAR 327

Query: 76  SVDSLIGLGDIE------------QVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                  +                 +          V++              +++ NL 
Sbjct: 328 INAGETLISPCLLDFGELVGQLIATINGGLANPRINVELLARPLVRVDPIWMERVIWNLL 387

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHD 180
             A         + + ++   ++ + S++  G      +    F +   G     +    
Sbjct: 388 DNALKYSADDTNIDVRLELEHDQVLLSIRDAGLGIDPQDLERIFERFTRGRHTQRVGGTG 447

Query: 181 IQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
           +  Y V  +   +   ++ E         L+  L 
Sbjct: 448 LGLYTVRAVVRAHGGSIVVESEGLGRGSCLTVSLP 482


>gi|94263693|ref|ZP_01287501.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455892|gb|EAT06051.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1095

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 66/251 (26%), Gaps = 38/251 (15%)

Query: 2   AKNICF---NLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            KN+      L + +     +   + + H+I +P+ AI     L  +  + ++    +  
Sbjct: 314 RKNVELNAARLEAEEATRAKSEFLANMSHEIRTPMNAIIGLSYLCLQTDLNNKQHDYLTK 373

Query: 56  SSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
              SA                    + +        D    L  I  V      +   V+
Sbjct: 374 VHSSAQSLLGIINDILDLSKVEAGKLEIEHIPFALQDVTDHLTSIIHVKAQEKQLHFHVE 433

Query: 102 --VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV-------TISVQDSKNENIFSLK 152
             +      +       +IL+NL   A     +G  +            +      F++K
Sbjct: 434 TAIDIPPFLVGDPLRLGQILINLCGNAIKFTSQGQVMLQIVLAEQTEQTEQTARIHFAIK 493

Query: 153 INGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             G     PE+ +++                   +       L       +  E      
Sbjct: 494 DTGTGM-TPEQISRLFQAFSQADSSTTRQFGGTGLGLVISKQLVETMGGEISVESEPGKG 552

Query: 207 VV--LSALLEK 215
                +  LEK
Sbjct: 553 STFMFTINLEK 563


>gi|333026706|ref|ZP_08454770.1| putative two-component system sensor kinase [Streptomyces sp.
           Tu6071]
 gi|332746558|gb|EGJ76999.1| putative two-component system sensor kinase [Streptomyces sp.
           Tu6071]
          Length = 475

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/229 (8%), Positives = 58/229 (25%), Gaps = 15/229 (6%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRL 55
           + K++              + + H++ +P+ A+    ++L E     +      ++L+  
Sbjct: 232 LEKSVAELRRMEARARRFAADVSHELRTPLAAMAAVTDVLAEEAPRFDKDTADAVRLVTE 291

Query: 56  SSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +M     ++ +     +        + D  +       +           ++       
Sbjct: 292 ETMRLARLVEDLMEISRFDAGAVELHADDLDLAESVRRTLSTRGWTGRVETELPAGVRAR 351

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              R    ++ NL   A        ++ +    S       +   G              
Sbjct: 352 VDPRRLDVVVANLVGNALKHGAAPVRLALRPLPSPRGVEIEVSDRGPGVPEAALPHLFDR 411

Query: 170 GNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +  +S  +           +   +      D  VV +  L 
Sbjct: 412 FFKAGAARTRSESSGLGLAITHENVRLHGGDVTAANRPDGGVVFTVRLP 460


>gi|332097792|gb|EGJ02766.1| sensor protein kdpD domain protein [Shigella boydii 3594-74]
          Length = 566

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 321 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 379

Query: 54  RLSSMSAIIRLKFMRLA------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 380 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 439

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 440 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 499

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 500 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 552


>gi|330811806|ref|YP_004356268.1| two-component system, sensor kinase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379914|gb|AEA71264.1| two-component system, sensor kinase [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 529

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 69/219 (31%), Gaps = 20/219 (9%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRLKF-- 66
           + L +L  L + I H+I +P+GAI ++ +LL E   + +   +L ++    +    +   
Sbjct: 305 LKLASLGRLTAGIAHEIRNPLGAISHAAQLLRESEELNNADRRLTQIIQDHSQRMNRVIE 364

Query: 67  -----MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                 R        +D    L    +   + +A  + + +S          +  ++   
Sbjct: 365 NVLQLSRRQQTTPQRLDLRTWLDQFVRQARESMAEHQHLHLSIDPGDYTTLMDPDQLTQV 424

Query: 122 LFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L      A              + + +      +   +  NG     PE+   + +    
Sbjct: 425 LDNLLRNAWRHSAMTHEQAEAWLKLFIDPHSQLSTLDIIDNGPGV-TPEQQAHLFEPFFT 483

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           ++     +  Y    L   N+ RL  +            
Sbjct: 484 TSSQGTGLGLYLSRELCESNQARLDFKPRQGGG-CFRIT 521


>gi|312961645|ref|ZP_07776143.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
 gi|311283904|gb|EFQ62487.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens WH6]
          Length = 917

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSA 330

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++       +      V    
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ + +     +   S++  G     
Sbjct: 391 PLSLVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDNVQLRISVQDTGIGLSS 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|253989039|ref|YP_003040395.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253780489|emb|CAQ83651.1| sensor protein [Photorhabdus asymbiotica]
          Length = 943

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M K++     + +  +    +  + + H++ +P+  I  +LELL    +  E  +L+   
Sbjct: 453 MEKSLQEMALASEQASYSKSMFLATVSHELRTPLYGIIGNLELLQAHSLPAESARLLSTM 512

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E   ++ I+                    +
Sbjct: 513 NNSSALLLKIISDILDFSKIESKQLKIEPKEFSCQEVISHVISNYLPLVVKKSLSLYCYI 572

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +        +      +++ NL   A      G      V D        ++  G     
Sbjct: 573 EPDVPNYIRNDPVRLQQVISNLLNNAIKFTDTGCVAIHVVVDKD-YLYVRVRDTGVGISD 631

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               ES+     +       L +     +          + S  L 
Sbjct: 632 KELIQLFDPFFQIMPNTESSSQGTGLGLAICEKLINLMDGDIEVISQPQIGSMFSIRLP 690


>gi|229520292|ref|ZP_04409718.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
 gi|229342658|gb|EEO07650.1| sensor histidine kinase [Vibrio cholerae TM 11079-80]
          Length = 736

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTPKQRQHLTSLYESG 402

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578


>gi|229529146|ref|ZP_04418536.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
 gi|229332920|gb|EEN98406.1| sensor histidine kinase [Vibrio cholerae 12129(1)]
          Length = 736

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTPKQRQHLTSLYESG 402

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578


>gi|170749493|ref|YP_001755753.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656015|gb|ACB25070.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 601

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/250 (9%), Positives = 66/250 (26%), Gaps = 40/250 (16%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M + +   + +++      + + H++ +P+ ++ +++E L           +M +I+   
Sbjct: 348 MTQALYRRIDAIES---FAADVSHELKNPLTSLRSAVETLPLARNDESRGRLMAIIQHDV 404

Query: 58  MSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101
                 +  +  A              VD    L  +  V  +       +         
Sbjct: 405 KRLDRLISDIADASRLDAELARAEARRVDLRRLLTTVVSVANERRRPKDCLIQLDVEATG 464

Query: 102 --VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    I       +++ NL   A +  P   KV + ++  + E     +  G    
Sbjct: 465 SEQDAPFTIIGHDSRLGQVVNNLLDNARSFSPTDAKVRVVLRRVRGEVEMICEDEGPGIP 524

Query: 160 FPEKFTQIVDGNVESTIDS-----HDIQFYYVILLAHENKIRLLPEIIDD---------- 204
                 +I +       +        +       +   ++  +  E              
Sbjct: 525 EHAL-ERIFERFYTDRPEQGFGQNSGLGLSISRQIVQAHRGTIRAENRPGAPDEDGEPTV 583

Query: 205 HNVVLSALLE 214
                   L 
Sbjct: 584 RGARFVVRLP 593


>gi|121727650|ref|ZP_01680753.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|153828559|ref|ZP_01981226.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|229523849|ref|ZP_04413254.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|254285229|ref|ZP_04960194.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|297579350|ref|ZP_06941278.1| sensor histidine kinase [Vibrio cholerae RC385]
 gi|121630037|gb|EAX62444.1| sensor histidine kinase [Vibrio cholerae V52]
 gi|148875954|gb|EDL74089.1| sensor histidine kinase [Vibrio cholerae 623-39]
 gi|150424501|gb|EDN16437.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|229337430|gb|EEO02447.1| sensor histidine kinase [Vibrio cholerae bv. albensis VL426]
 gi|297536944|gb|EFH75777.1| sensor histidine kinase [Vibrio cholerae RC385]
          Length = 736

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTPKQRQHLTSLYESG 402

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578


>gi|254225353|ref|ZP_04918965.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
 gi|125622194|gb|EAZ50516.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V51]
          Length = 1331

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|120601368|ref|YP_965768.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
 gi|120561597|gb|ABM27341.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris DP4]
          Length = 1223

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 58/241 (24%), Gaps = 27/241 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS- 59
            M  +     +  +L +   + I H++ +P+  I    ++         +++       + 
Sbjct: 833  MRASRDEAAAMSELKSQFVANISHEMRTPLSGILGIADVALTTEGNPALLRNYFSMVQNV 892

Query: 60   -------AIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVS---- 103
                       L F RL  G          L          +          +++     
Sbjct: 893  AEGLLGVINDLLDFSRLEAGRMPLDKVEYDLHTTVRDALAPLAMQAERKGLALELHMQNG 952

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLA 158
                         +IL+NL   A    P+            V   +   +F+++  G   
Sbjct: 953  LPLTLRGDPLRLRQILVNLVGNAVKFTPQGTVHVDVSTGDGVTHDRECLVFTIEDTGPGI 1012

Query: 159  RFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               +           DG+         +       L       +  +       V    L
Sbjct: 1013 PHEKLAHIFESFAQADGSYSRQHTGSGLGLAISRHLVELQGGDIGVQSTPGEGSVFWFTL 1072

Query: 214  E 214
             
Sbjct: 1073 P 1073


>gi|255767715|ref|NP_391023.2| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|251757496|sp|Q08430|KINB_BACSU RecName: Full=Sporulation kinase B
 gi|2231219|gb|AAB61980.1| KinB [Bacillus subtilis subsp. subtilis str. 168]
 gi|225185343|emb|CAB15134.2| two-component sensor histidine kinase [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 428

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 70/231 (30%), Gaps = 19/231 (8%)

Query: 2   AKNICFN---LSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
           A+NI      + S  +  V+ L + + H++ +P+  +   ++LL                
Sbjct: 194 AENIALRSQLIHSEKMTIVSELAASVAHEVRNPLTVVRGFVQLLFNDETLQNKSSADYKK 253

Query: 50  -----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                +   +    + +   K              +     +     ++ +V    +   
Sbjct: 254 LVLSELDRAQGIITNYLDMAKQQLYEKEVFDLSALIKETSSLMVSYANYKSVTVEAETEP 313

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  + +  + ++NL   +  ++P   G + IS + + +  + ++  NG      + 
Sbjct: 314 DLLIYGDATKLKQAVINLMKNSIEAVPHGKGMIHISAKRNGHTIMINITDNGVGMTDHQ- 372

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +       +   +       +   +   +           ++  L 
Sbjct: 373 MQKLGEPYYSLKTNGTGLGLTVTFSIIEHHHGTISFNSSFQKGTTVTIKLP 423


>gi|76801017|ref|YP_326025.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
 gi|76556882|emb|CAI48456.1| signal-transducing histidine kinase [Natronomonas pharaonis DSM
           2160]
          Length = 504

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 54/213 (25%), Gaps = 9/213 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       +  L     S I HD+ +P+  I    +L  E    D++ ++   +     
Sbjct: 292 RRRNEIERKNERLE-RFASVISHDLQNPLNVILGYADLAMESRDPDDIERIATAAERMET 350

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK--IDLSRERAKIL 119
           I  +   L        ++                   +  V                +  
Sbjct: 351 ILEELQTLVQESRALGETEPVAISTVVERARSSVAMPKATVDIEEIGVAEADPGRLRQAF 410

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSH 179
            NL   A         V +   +      F+++ +G      ++     +G   +  D  
Sbjct: 411 ENLLRNAVEHAGPDVTVRVVPINGG----FAVEDDGPGIHPDKREAVFEEG--HTDGDGT 464

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +    V  +   +   +     +D        
Sbjct: 465 GLGLSIVRTVVEAHGWSVTATDAEDGGARFEVT 497


>gi|120596939|ref|YP_961513.1| osmolarity sensor protein [Shewanella sp. W3-18-1]
 gi|120557032|gb|ABM22959.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella sp. W3-18-1]
          Length = 438

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  ++  ++D ++  I     
Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R        +  +  L       E   A +  + ++   E +  +    ++
Sbjct: 280 IISQFIAYIRQDQEANRELAQINKLIQDIVQAEANRAGEIEMVLTDCPETLFQAIAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS Q       FS++ NG      +    F     G++   
Sbjct: 340 LSNLVENAFRYGS--GWIRISSQYDGKRIGFSVEDNGPGIDESQIQKLFQPFTQGDIARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   ++ ++      +  +     L 
Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQITLSNRKEGGLKAQVWLP 436


>gi|110640661|ref|YP_668389.1| phosphate regulon sensor protein [Escherichia coli 536]
 gi|191173480|ref|ZP_03035007.1| phosphate regulon sensor protein PhoR [Escherichia coli F11]
 gi|110342253|gb|ABG68490.1| phosphate regulon sensor protein phoR [Escherichia coli 536]
 gi|190906189|gb|EDV65801.1| phosphate regulon sensor protein PhoR [Escherichia coli F11]
 gi|324010711|gb|EGB79930.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 60-1]
          Length = 431

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 68/214 (31%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSHD 180
           A    P G  +T+  Q   +   FS++ NG        P    +    +           
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPHLTERFYRVDKARSRQTGGSG 388

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V    + ++ RL  E         S ++ 
Sbjct: 389 LGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|330960926|gb|EGH61186.1| response regulator receiver [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1167

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 70/250 (28%), Gaps = 37/250 (14%)

Query: 2   AKNICFNLSSMDLVA-------------LLCSRICHDIISPIGAIHNSLELLDEVGIEDE 48
            KN   N++  +L A                + + H++ +P+ +     +LL E   E+ 
Sbjct: 468 RKNEELNMAQAELQARADELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPKENL 527

Query: 49  VMQLIRLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             + ++ +                 + ++    G ++       + +++E    + + + 
Sbjct: 528 TAEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENSSVPRLVEGLRTLFQPLA 587

Query: 102 VS------------WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF 149
                                  +   +IL NL   A      G    I  +      +F
Sbjct: 588 TEKKLAFTVDIQAGAPTMLFTDRQRLEQILKNLLSNAIKFTEAGAVSMIVSRQPGAGIVF 647

Query: 150 SLKINGNLARFPEKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S++ +G       +       +  DG          +       LA      +       
Sbjct: 648 SVRDSGIGIAPEHQQGIFEAFRQADGTTNRRYGGTGLGLSISRDLAALLGGSISVTSAPG 707

Query: 205 HNVVLSALLE 214
              + + +L 
Sbjct: 708 QGSIFTLVLP 717


>gi|323490389|ref|ZP_08095604.1| YclK [Planococcus donghaensis MPA1U2]
 gi|323396059|gb|EGA88890.1| YclK [Planococcus donghaensis MPA1U2]
          Length = 471

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 63/231 (27%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57
           +     +  ++       + + H++ +P+  I   +E L     E    ++ ++L    +
Sbjct: 235 QQSNEEIDRLENRRRQFMADVSHEMRTPLTTIAGIMEGLRNNMIEENQREKGIRLASEET 294

Query: 58  MSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              I  +           +            + L  + +   +          +Q +   
Sbjct: 295 KRLIRLVNENLDYEKIRSNQVTLTKEEIEADELLEIIQEQLFLQGKEKGNQIVIQPNPGD 354

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
                     +IL+N+   A      G     +  +++     +++  G      E    
Sbjct: 355 VIYGDMDRLIQILVNIVKNAIQFTENGMITISTQAEAEQM-KITVEDTGAGIDVEEIDLV 413

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    ++        +    V  L   +   +  E    H       L 
Sbjct: 414 WRRFYKADISRGSGQFGLGLSIVKQLVTLHDGEIQVESKSGHGTKFIIYLP 464


>gi|320328898|gb|EFW84897.1| ATPase-like histidine kinase [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 973

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    I D   +         
Sbjct: 523 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRRALG 582

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 583 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIELNC 642

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I+   S+NE +F +  +G     
Sbjct: 643 TAAQGLVINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGIGIPA 702

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  E   D   V S  L 
Sbjct: 703 EHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTLP 758


>gi|311277818|ref|YP_003940049.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
 gi|308747013|gb|ADO46765.1| multi-sensor hybrid histidine kinase [Enterobacter cloacae SCF1]
          Length = 775

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 53/215 (24%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHISAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                       +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTGFMADLENLSGLQAQQKGLRFVMEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G        D+ +   F ++ +G      E+                    
Sbjct: 408 SNAVKFTQQGQVTVRVRYDAGDMLRFEVEDSGIGIPQEEQDKIFAMYYQVKDSHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       +  
Sbjct: 468 GTGIGLAVSKRLAKNMGGDITVSSLPGKGSTFTLT 502


>gi|283851565|ref|ZP_06368845.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573099|gb|EFC21079.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 783

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 16/242 (6%), Positives = 59/242 (24%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           +     + +  +  L  + + + H++  P+  I    + L      DE    +   ++  
Sbjct: 534 ETEQQLIQASKMATLGEMATSVAHELNQPMTVIQTITDYLLRKTRRDEPVPRELFQEMAD 593

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDS--------LIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                     + +     +    D          +    +E   +     +  V      
Sbjct: 594 GIGRHISRATRIINHMREFGRKSDLVTGPVDLGEVLSRTLELFSQQLKVRNIEVACDIRP 653

Query: 107 EKID---LSRERAKILLNLFMVAHASLPRGGKVTI--------SVQDSKNENIFSLKING 155
           +       +    ++ +NL + A  ++                 V   ++  +  +   G
Sbjct: 654 DLPPVLAEANRLEQVFMNLLLNARDAIEERAASQPGAPKRVSLRVFAEEDFVVAEIADTG 713

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +   ++ +    +        +       +  +    +               L
Sbjct: 714 PGI-PTDIQDKVFEPFFTTKAVGKGTGLGLSISYGIIKDYGGSIEAVAAPGQGARFLVRL 772

Query: 214 EK 215
            +
Sbjct: 773 PR 774


>gi|262192397|ref|ZP_06050550.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
 gi|262031750|gb|EEY50335.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae CT 5369-93]
          Length = 1331

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|254976865|ref|ZP_05273337.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255094252|ref|ZP_05323730.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255316005|ref|ZP_05357588.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255518662|ref|ZP_05386338.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255651784|ref|ZP_05398686.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260684810|ref|YP_003216095.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260688468|ref|YP_003219602.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|260210973|emb|CBA66249.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260214485|emb|CBE06967.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 671

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 1   MAKNIC--FNLSSMDLVALL------CSRICHDIISPIGAIHNSLELLD------EVGIE 46
           + +N+     + + +L  LL       + + HD+ +P+ AI + ++L+       +    
Sbjct: 428 LTRNLEHEVEVRTNELTTLLNERKKFLADVAHDLKAPVSAIQSFIDLIKVGNIHVDEETR 487

Query: 47  DEVMQLIRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
             +  + + S+                            D +  + +          V+ 
Sbjct: 488 TYLYAINQKSNEVQNRVRSLQEFTSQDKSIGISEKICLNDFIKEIYENNLPDTQACGVNF 547

Query: 99  RVQVSWTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
              +        +++E   +   NL   A    P  GK+ +S+       I  +  NG  
Sbjct: 548 ETYILEKKIYAKINKEMLTRAFENLIYNALTFTPFDGKIILSMDKEDGFAIIKVSDNGKG 607

Query: 158 ARFPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                    F +       +      +  Y V  +  E+   +  +       V +  L
Sbjct: 608 IPPENIPKVFDRFFTERDNNEPKGQGLGLYIVKSIIREHGGEIFVDSELGKGTVFTIKL 666


>gi|223985836|ref|ZP_03635877.1| hypothetical protein HOLDEFILI_03183 [Holdemania filiformis DSM
           12042]
 gi|223962226|gb|EEF66697.1| hypothetical protein HOLDEFILI_03183 [Holdemania filiformis DSM
           12042]
          Length = 489

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 72/241 (29%), Gaps = 26/241 (10%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQ 51
           +A  +      +    +L   L + + HDI +P+  I    E++ +         DE + 
Sbjct: 241 LADTLNDATHKLSKVDELRRDLIANVSHDIKTPLTMIKAYAEMIHDISGDIPAKRDEHLD 300

Query: 52  LIRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +I                             G+ +    + +I  + +  I       V 
Sbjct: 301 VIVREVDYLDHLVTDMAELSKMQSGSYQLKVGTFNLSQKIQNIVTLCQVMIDEHHYQLVI 360

Query: 104 WTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                + ++ +    ++++ N    A    P G K+TI   +  +     ++  G   + 
Sbjct: 361 ECPRNLMMTADEVKISQVIYNFLSNAFKHTPDGKKITIRAFEKNDWIQVEVEDEGEGIKK 420

Query: 161 PEK------FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       + +I      +T  S  +    V  +   +      E  +         + 
Sbjct: 421 EDLPYIWDRYYKIDKKYQRATGGSTGLGLAIVKAILDSHHAEYAVESEEGKGSRFWFRIR 480

Query: 215 K 215
           +
Sbjct: 481 R 481


>gi|189348642|ref|YP_001941838.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|189338780|dbj|BAG47848.1| signal transduction histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 767

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 21/230 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
               +S  L   L + + H++ +P+  I+  +E+L   G +   +Q I     SA    +
Sbjct: 385 EQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDALRVQAIDAIDRSARSLTR 444

Query: 66  FMRLAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
            +      +             +  +     V+  F        ++   E    +     
Sbjct: 445 MVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFESRVATCIVSG 504

Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++L NL   A    P GG VT+SV       + ++   G               
Sbjct: 505 DAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAPEFVPHVFDMF 564

Query: 171 NVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                          +    V  +   +   ++ +    +     +  L 
Sbjct: 565 RRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 614


>gi|153807242|ref|ZP_01959910.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185]
 gi|149130362|gb|EDM21572.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185]
          Length = 1318

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 67/229 (29%), Gaps = 24/229 (10%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
             L+   L     + I H+  +P+  I   +E L +       I ++V+ + + S     +
Sbjct: 775  ALNQSKLR--FFTNISHEFRTPLTLIVGQVETLLQVQTFTPNIYNKVLGIYKNSLQLREL 832

Query: 63   RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-----------AVDKRVQVSWTGEKIDL 111
              + +       G +   +   ++   + +                K  +     E    
Sbjct: 833  ITELLDFRKQEQGHMKIKVSRHNLVNFLYENYLLFLEYASSKQINFKFNKQKDDIEVWYD 892

Query: 112  SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             ++  K++ NL   A         ++I+V   ++  I  +K  G+     E         
Sbjct: 893  QKQMQKVINNLLSNALKHTKAEDTISINVSQEEDYAIIEIKDTGSGIAAAEIDKIFDRFY 952

Query: 172  VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                ++         I       +   ++  +  E            L+
Sbjct: 953  QTEHLNSLNTGAGTGIGLALTKGIIELHQGTIRVESEPGKGSSFIITLK 1001


>gi|119493492|ref|ZP_01624159.1| Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119452675|gb|EAW33855.1| Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 439

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 64/228 (28%), Gaps = 23/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQLIRLSSMSA 60
            S   +    +   H++ SP+  I  S+++L+         +      ++      S   
Sbjct: 210 QSFKQLQQFTADASHELRSPLTVIKTSVQVLETHANYIYAEDREQFQAIISATNQMSRLV 269

Query: 61  IIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
              L   R       S            L  + ++  +  +   +  + +     +    
Sbjct: 270 EDLLLLARTDQFNRTSDQSLSLIVINELLEEVVELLDLNAEAKNIVIQFKPQTDVKVKGD 329

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV 168
           + +  ++  NL   A    P GG VT+S           +K  G        P  F ++ 
Sbjct: 330 ASQLFRLFRNLIENALQYTPPGGTVTLSNHREDQVVWVDVKDTGIGIASEHLPFVFDRLW 389

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   T   D   +       ++  +   +  +            L 
Sbjct: 390 RADTARTYCEDGSGLGLAISQAISRRHGGEITVKSKVGVGSCFQVRLP 437


>gi|115374744|ref|ZP_01462020.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368221|gb|EAU67180.1| PAS/PAC Sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 641

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 18/213 (8%), Positives = 54/213 (25%), Gaps = 21/213 (9%)

Query: 23  CHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG----- 72
            H++ +P+  +   L  L+        ++   +   R         +  +          
Sbjct: 411 SHELKTPLTPLSLRLATLERKLERGEPVDPASLHHARQHLTRLTTLINDLLDTSRIESGG 470

Query: 73  ---YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VA 126
              +       + +  +  V E       R+        I++  +  ++   +      A
Sbjct: 471 LALHPQPTRLDVLIEHVIHVTETLHDARDRITFHLPVRPIEVLGDPYRLEQVISNLLENA 530

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-----IDSHDI 181
               P GG + +S++   +  + ++   G      ++                      +
Sbjct: 531 LKYSPDGGTIRVSLEARGDVVLMTVSDPGIGIPSDQQQHLFERYFRARNVSTHAYGGLGL 590

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             Y    +   +   +  E            L 
Sbjct: 591 GLYICRDIVARHGGSIWVESEVGRGSTFYVALP 623


>gi|159896838|ref|YP_001543085.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889877|gb|ABX02957.1| GAF sensor signal transduction histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 754

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 56/236 (23%), Gaps = 27/236 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----------QL 52
                L       L  +   H++ SP+ AI    +LL    ++               Q 
Sbjct: 490 TEQRRLEEAKDEFLAVA--AHELRSPLAAIKGYSDLLLRRELKQASEGRDLRGFITLSQQ 547

Query: 53  IRLSSMSAIIR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           + +                        +VD  I L  +                      
Sbjct: 548 VNIMVQLVDNLLDVSRIDAERYTIQLDAVDLGILLDSVVTHARQTANNHTLHFEQLNQSV 607

Query: 109 IDLSR-ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +     +  ++  N    A    P+   + + V   +      +   G      ++  ++
Sbjct: 608 VYGDSLKLRQVATNFLTNAIRYSPQQTNIWVQVFSDEQFGYVQVDDQGPGIPQGQR-ERL 666

Query: 168 VDGNVE--------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +            S+ +   +  Y    +   +  R+  +            + +
Sbjct: 667 FERYYRVPGIRRTGSSTEGLGLGLYLCREIITLHNGRIWVDSAPSGGARFCIAIPR 722


>gi|326804104|ref|YP_004321922.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
 gi|326651621|gb|AEA01804.1| alkaline phosphatase synthesis sensor protein PhoR family protein
           [Aerococcus urinae ACS-120-V-Col10a]
          Length = 614

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 59/230 (25%), Gaps = 26/230 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIR--- 63
             + +   +   H++ +P+ A+    E L     ++     E ++++   +         
Sbjct: 366 EKVRSDFIANASHELKTPVTALKGFTETLLDGALEDEDTAREFVEIMNREANRLGFLIND 425

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--GEKIDLSR 113
                      +            +  +    ++      V+                  
Sbjct: 426 ILDLAKIEQDQLGHRSETVQLNRVIAEVVHSLEIPASENRVEVHYDNDLEAGIRFTTEEM 485

Query: 114 ERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQI 167
              +IL NL   A            ++ +V +     + +++ NG      +    F + 
Sbjct: 486 RLKQILTNLINNAIKYNKAEGGQVWISSTVTEDDKYVVVAIRDNGLGIPDEDIPRIFERF 545

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +       +    V  L      ++      +     +  L K
Sbjct: 546 YRVDKTRSTASGGTGLGLSIVRNLVASMSGKIDVVSELNEGSTFTVYLPK 595


>gi|291281303|ref|YP_003498121.1| Signal transduction histidine kinase [Escherichia coli O55:H7 str.
           CB9615]
 gi|290761176|gb|ADD55137.1| Signal transduction histidine kinase [Escherichia coli O55:H7 str.
           CB9615]
          Length = 431

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|317152903|ref|YP_004120951.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316943154|gb|ADU62205.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 696

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 62/243 (25%), Gaps = 32/243 (13%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           +        M+ + L+   + H+I +P+G I    +LL E       +Q          +
Sbjct: 432 EKQLIQAQKMESLGLMAGGVAHEINTPLGIILGYAQLLQEDVAPGTQIQQDLAVVEKQAK 491

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKID 110
           +        L F R        +     + +   ++     +D    V            
Sbjct: 492 VCKKIVADLLGFSRQTHSAKREMCFNNSVMEAVTLVRHTFELDHVDIVTQLDDRFPIIYG 551

Query: 111 LSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++ +NL   +  ++P G    +   +   +      +   G      +   +I 
Sbjct: 552 DPEKLKQVWINLLTNSRDAMPDGGLIIIRTRLDTPRGVVQLWVADCGEGI-KEDVLKKIF 610

Query: 169 DGNVESTI--DSHDIQFYYVILLAHENKIRLLPEI---------------IDDHNVVLSA 211
           D    +        +       +  ++   +                         V   
Sbjct: 611 DPFYSTKPVGRGTGLGLSVSFGIIEDHDGEIHATSPVPAEFNFPQEALSRKTGPGTVFEV 670

Query: 212 LLE 214
            L 
Sbjct: 671 NLP 673


>gi|322417990|ref|YP_004197213.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124377|gb|ADW11937.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 685

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
            +        M+ V  L   + HD  + +  I    +L              ++ I  ++
Sbjct: 303 TEEQLRQAQKMESVGRLAGGVAHDFNNMLTVIMGQAQLAKMRISPHHRLWPALEQIWTAA 362

Query: 58  MSAII----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTGEKID 110
             +       L F R        V+    + + ++ +   I     +     +       
Sbjct: 363 QRSSRITRQLLAFSRKEIIDPQPVNLNQLIAEAQKTLLRLIEESITLACLPGTDLWTVKM 422

Query: 111 LSRERAKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKING 155
              +  ++L+NL + A  ++P               R     +      +     +   G
Sbjct: 423 DPSQIDQVLMNLAVNARDAMPDGGVLSIQTENVHLSRKDCQHLRDAVPGDYVQLRVSDTG 482

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 E    I D    +        +    V  +  +N   +       H       L
Sbjct: 483 IGM-GQEVLEHIFDPFYTTKEIGKGTGLGLATVYGIVRQNGGFIDVYSELRHGTAFKIYL 541

Query: 214 EK 215
            +
Sbjct: 542 PR 543


>gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
 gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7424]
          Length = 1383

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 59/236 (25%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
            +     L+ +D    +  S I H++ +P+  I   +E L   DE  +       + ++ 
Sbjct: 338 ERKRAEALTELDRAKTVFFSNISHELRTPLTLILGPIEALLHSDESSLSKGDRISLIMAQ 397

Query: 58  MSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + +   K                  +    D      D+  V    +            
Sbjct: 398 RNVLRLQKLVNTLLEFSRLEAGRIQAFYQPTDLATFTHDLASVFRSAMEQAGIEFSVNCP 457

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEK 163
              +L     ++   + +   ++  +             +       ++  G      E 
Sbjct: 458 PLPELIYVDRQMWEKIVLNLLSNAFKFTFEGEIRLSLAWTGERVKLDIQDTGVGIAPEEI 517

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +        T +   I    V  L + +   +      +     +  + 
Sbjct: 518 PHLFQRFHRVLGVRSRTHEGSGIGLSLVRELVNLHGGTIEVNSTLEAGTCFTIYIP 573



 Score = 94.1 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 64/231 (27%), Gaps = 17/231 (7%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV----------M 50
            + +         + +      + HD+ +P+ AI N  + ++E   +              
Sbjct: 1152 LTETAELLQKKNEELDQFTYIVSHDLKAPLRAIANLSQWIEEDLSDIIPPESQQQIELLR 1211

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            Q +          L + R+           +     E +          +++      + 
Sbjct: 1212 QRVYRMDQLINNLLDYARIGRSEATKERVEVAQLLEEIIDSLAPPPTFTLEIDLPMPTLM 1271

Query: 111  LSRER-AKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +   +++  NL            GK+ ISVQ+  N   F +  +G      +   +I 
Sbjct: 1272 TEKLLLSQVFSNLISNGIKHHGKDQGKLKISVQEQNNFYQFLIADDGQGIPV-DYQEKIF 1330

Query: 169  DGNVESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        DS  I    V  +      +++           S    K
Sbjct: 1331 AIFQTVKSKDNKDSTGIGLSIVKKIVEIQGGKIMVSSQVGEGTTFSFTWPK 1381


>gi|254436846|ref|ZP_05050340.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
 gi|198252292|gb|EDY76606.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Octadecabacter antarcticus 307]
          Length = 598

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 63/224 (28%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELL---DEVGIEDEVMQLIRLSSMSAI 61
            +  L AL  + + + H++  P+ A+   L    LL   +        +Q I        
Sbjct: 356 QTSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLIARERPEEAVVAVQRIDGLIDRMG 415

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
              K ++            + + D        +          +  +     + +  +R 
Sbjct: 416 AITKQLKSYARKGKDNLEPVDVKDAVLSSLSMMEPQLRQRQVAIARTLPDHPVMIYGDRM 475

Query: 117 KILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           ++   +  +   +L           +      +    S++ NG   +  ++   + +   
Sbjct: 476 RLEQVIINLLRNALDATKMAAEPSVEILLAQGDVARLSVRDNGTGIQDLDE---LFEPFY 532

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    D   +       + ++   RL     D    V    L 
Sbjct: 533 TTKQAGDGTGLGLAISSGIVNDFGGRLTARNSDKGGAVFEVELP 576


>gi|223937564|ref|ZP_03629467.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223893727|gb|EEF60185.1| multi-sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 616

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 61/218 (27%), Gaps = 23/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRL-- 69
           L + + H+I +P+ ++   L LL E         + E+++  R  S   +  L  +    
Sbjct: 386 LVATVSHEIRTPLTSVRMVLHLLLEKTVGVLTPKQSELIETARDDSERLLRILNDLLDLT 445

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-KIDLSRERAKIL 119
                        T   + +  + DI         ++   +V           +    + 
Sbjct: 446 RLEQGNSDLYKEKTSPAELVRHINDIVHDAAAARELNLVCEVDPELPLVWVDRQRIDHVF 505

Query: 120 LNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVEST 175
            NL   A    P G +V  S       +  F ++  G           F +      ++ 
Sbjct: 506 TNLLNNAIKYSPIGSRVIFSARWSDDFDVQFIVRDFGPGIPEEYQDHIFDRFYRVPGQTK 565

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                +       +   +  R+              +L
Sbjct: 566 -TGAGLGLSIAREIVIAHGGRIGVRSWPGQGSEFYFIL 602


>gi|171910825|ref|ZP_02926295.1| two-component hybrid sensor and regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 772

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 70/239 (29%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---QLIRLSSMS 59
           +        M+ +  L   I HD+ + +  I  S+ LL      +E +    ++  S+  
Sbjct: 389 EKQFLRAQRMESIGTLAGGIAHDLNNVLTPIVMSITLLRAGETSEEKLAVLDMVEKSANR 448

Query: 60  AIIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +K +          T  V   + L ++E++  +      +++V    +   +  + 
Sbjct: 449 GAQLIKQVLTFARGVESRTVVVQLRLLLYEVEKICSETFLKSIQIRVKSAPDLWPVLGDP 508

Query: 116 ---AKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNL 157
               ++LLNL + A  ++                     T          +  +   G  
Sbjct: 509 TQLHQVLLNLCVNARDAMHHGGTLTLQADNVVLDEHYAATSVEAKPGPYVVLQVSDTGAG 568

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE   +I +    +        +     + +   +   L      D        L 
Sbjct: 569 M-SPEVIDRIFEPFFTTKETGKGTGLGLSTTLAIVKSHGGFLKVHSERDVGTRFQVYLP 626


>gi|163839169|ref|YP_001623574.1| sensor-like histidine kinase [Renibacterium salmoninarum ATCC
           33209]
 gi|162952645|gb|ABY22160.1| sensor-like histidine kinase [Renibacterium salmoninarum ATCC
           33209]
          Length = 395

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +A +      +  +     + + H++ +P+GAI    E L+    +        Q +   
Sbjct: 137 LADDRTEIARTEAIRNDFVANVSHELKTPVGAISLLAEALEASPDDEEAVRRFAQRMHKE 196

Query: 57  SMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           S+     ++ +                 VD    + +     +          V      
Sbjct: 197 SLRLAALVQDIIELSRLQGADIVQQGHEVDLNAVILEAVDRSKLQAEAKHIELVLGGSAA 256

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  +   ++         A    P    V I ++ S+     S+   G+     E   
Sbjct: 257 QPVFGDADLLVTAFRNLIDNAVRYSPERTTVGIGLRRSEGLLSVSVSDQGDGISPEE-QE 315

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I +                 +    V  +   +   +            +  L 
Sbjct: 316 RIFERFYRVDAARSRQTGGTGLGLSIVKHVISNHGGEVTVWSQKGKGSTFTVRLP 370


>gi|159027054|emb|CAO89239.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 733

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 72/245 (29%), Gaps = 32/245 (13%)

Query: 2   AKNICFNLSSMDLVALLCS----RICHDIISPIGAIHNSLELLDE---------VGIEDE 48
            + +   L + +   L  S     + H++++P+  I      L +            +  
Sbjct: 350 TQELQDTLMAAEAANLCKSEFLNNMSHELLTPLTCIIGLSSTLQKCSAASNFLPPDKQKH 409

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFI 94
            +Q+I+ +    +  +  +      +                 + ++ +   E  I++  
Sbjct: 410 YLQVIQDNGNKLLELINDLLNFSQVSAGKAVLDIKQFSLKYLCNHVLEIIKTEAEIKEIN 469

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
            + +                  +ILL L   A    P  G +T+ +    ++ IF ++  
Sbjct: 470 LILEMKITEKEHYFYADYDRVQQILLYLLKNALKFTPEQGAITLRLWKEGSQVIFQVEDT 529

Query: 155 GNLARFPEK---FTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G      +    F +    +           +       L   ++  +  E   D   + 
Sbjct: 530 GIGIPAQKIPLLFEKFTQLDGSRKRRYGGMGLGLALTKQLVELHRGTIEVESCLDKGSIF 589

Query: 210 SALLE 214
           +  L 
Sbjct: 590 TVRLP 594


>gi|121998929|ref|YP_001003716.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
 gi|121590334|gb|ABM62914.1| multi-sensor hybrid histidine kinase [Halorhodospira halophila SL1]
          Length = 1643

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 63/243 (25%), Gaps = 31/243 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
             +       +    +   + + H+I +P+ A+    +LL E  ++      +     S+ 
Sbjct: 915  KQAQEQAEQASRAKSEFLANMSHEIRTPLNAVIGLSQLLLETSLDKRQQDHLNKVLSSSR 974

Query: 62   IRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWT 105
            + L  +     ++            + D    +  +  +  +            +     
Sbjct: 975  MLLGIINDILDFSKIESGQLELDTHTFDLHEVVDHLAALFGEVGHRKQLELVYSLPPQIP 1034

Query: 106  GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE------NIFSLKINGNLAR 159
               +  S    ++L NL   A    P GG+V + +Q  +          F ++  G    
Sbjct: 1035 CVLVGDSLRITQVLTNLLSNATKFTPEGGEVEMGIQLVEPPKADSVTLRFFVRDTGIGM- 1093

Query: 160  FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSA 211
              E+  ++                   +       L       L                
Sbjct: 1094 SEEQLGRLFRAFTQADTSTTRRYGGSGLGLVISRRLVERMGGALEATSKPGQGSTFAFEL 1153

Query: 212  LLE 214
             L 
Sbjct: 1154 TLP 1156


>gi|116620984|ref|YP_823140.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
 gi|116224146|gb|ABJ82855.1| multi-sensor hybrid histidine kinase [Candidatus Solibacter usitatus
            Ellin6076]
          Length = 1155

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 64/236 (27%), Gaps = 23/236 (9%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
            + +     +    L +L  L + I HD  + +G++ +  EL +             + + 
Sbjct: 775  LKRTQAEAIERQKLESLRVLTNGIAHDFNNLLGSVVSVAELAELEMLAGASPQEQIERIK 834

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
             L   +S      + F         S+D      ++ ++++  I+    ++         
Sbjct: 835  FLAVRASEIVRELMIFSGQDQADLTSLDLSSLAEEMLELLKVSISKHAVLKTDLPRNLPP 894

Query: 111  LSRERAKILLNLFMVAHASLPRGGKVTISVQ------------DSKNENIFSLKINGNLA 158
            +    A+I   L  +   +    G+    ++                     +   G   
Sbjct: 895  MRGNAAQIRQVLMNLIINASEALGESDGMIRIAVSRAAPSRSLPGGAFLRLEVSDTGCGI 954

Query: 159  RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               E   +I D    +      +    V  +   +   +       +         
Sbjct: 955  -SEESQARIFDPFFSTKFAGRGLGLAVVQGIVRAHAGAIQLSSAPGNGARFEIFFP 1009


>gi|320160342|ref|YP_004173566.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
 gi|319994195|dbj|BAJ62966.1| two-component sensor histidine kinase [Anaerolinea thermophila
           UNI-1]
          Length = 471

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 24/233 (10%)

Query: 5   ICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSMSAI 61
           +   L +++     L + + H++  P+GA+ ++++ L    + D V+  +L+       +
Sbjct: 237 LAERLKNLESARRQLLANLVHELGRPLGALRSAVQALLNGAVNDHVLSGELLNGMENELV 296

Query: 62  IRLKFMRLAFGYTGSV---------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                +         V                    +   +    +     + V      
Sbjct: 297 RLQSLLGELTHLYDQVLGDLELERKPVDLKAWLGELIAPWQVNAAEQGVRWETVIPDELP 356

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     + L NL   A    P GG + + V  +  E    ++  G      E   +
Sbjct: 357 SLSIDPVRMGQALGNLLSNAVKFTPAGGLIRLEVSQTPAEVRICVRDTGAGIPPDEL-EK 415

Query: 167 IVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I             ++   +       +   +  R+  E I       + +L 
Sbjct: 416 IFTPFYRGTQGKRFVEGMGLGLSIARDVVKAHGGRIDVESIVGQGSAFTIVLP 468


>gi|320157731|ref|YP_004190110.1| nitrogen regulation protein NR(II) [Vibrio vulnificus MO6-24/O]
 gi|319933043|gb|ADV87907.1| nitrogen regulation protein NR(II) [Vibrio vulnificus MO6-24/O]
          Length = 348

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 67/232 (28%), Gaps = 23/232 (9%)

Query: 4   NICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               N  +    A LL   + H+I +P+G +  + +LL+++  +  + +  ++    A  
Sbjct: 118 TQEMNQHAQQQAAKLLVRGLAHEIKNPLGGLRGAAQLLEKMLPDPSLTEYTQIIIEQADR 177

Query: 63  RLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
               +         G     +    L  + Q++E        ++  +     D+  +  +
Sbjct: 178 LRALVDRLLGPQKPGKKQQTNLHQVLEKVRQLVELESEQTLVIERDYDPSLPDIYIDADQ 237

Query: 118 ILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           I   +  +   +                    +  I  Q  K      +  NG      E
Sbjct: 238 IEQAMLNIVSNASQILAHQEDGKISIRTRTVHQANIHGQRCKVAARIEIMDNGPGIPV-E 296

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V        +       L  ++  ++  E    H    +  L 
Sbjct: 297 LQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGH-TNFTIYLP 347


>gi|317500905|ref|ZP_07959116.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089195|ref|ZP_08338097.1| hypothetical protein HMPREF1025_01680 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316897703|gb|EFV19763.1| sensor protein [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405747|gb|EGG85276.1| hypothetical protein HMPREF1025_01680 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 249

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 61/216 (28%), Gaps = 20/216 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S I H+I +P+  + ++L++++    E         +          +     +    
Sbjct: 34  IVSMISHEIRNPLTLVSSALQIIEIQHPEVINFHGWSQAIEDIEFMCNLLNELSDFNNGS 93

Query: 78  DSLIGLGDIEQV-------------IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                +  +E++               +            +        +  +++LNL  
Sbjct: 94  TLHHSVFSLEKLLKNIAVSFAMSLDSINSNIEFTSKISLNSDNYTGDKIKFEEVILNLLQ 153

Query: 125 VAHAS------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDS 178
            A  +          G + +  +   +  + S   NG      +    I D  V    + 
Sbjct: 154 NAKDAVSEKTFTDSKGSIFLCAEKISDSIVISCTDNGCGI-SDDIVNTIFDPFVTYKTNG 212

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +   L+    D+   V +  L 
Sbjct: 213 TGLGLALSKKIIEAHGGTLIVTSSDETGTVFTITLP 248


>gi|311696699|gb|ADP99572.1| multi-sensor hybrid histidine kinase [marine bacterium HP15]
          Length = 1166

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 25/233 (10%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
                +S +  +   + + H+I +P+ AI    E L +  + +   +    + + +   L
Sbjct: 548 KELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLSEPEKRSSAETVVRSGRHL 607

Query: 65  KFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKIDL---- 111
             +         +D+     DI          ++   F    +   + ++          
Sbjct: 608 LDLVNDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLDFSIICEYPLPEQ 667

Query: 112 ----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFTQ 166
                    +I++NL   A     +G    +   D   E  +  +   G     PE+  +
Sbjct: 668 VRTDPTRLRQIIINLCGNALKFTDKGSISLVVRCDRDQELLVARVVDTGIGM-KPEQLGR 726

Query: 167 IVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           + D        +        +       LA      +               +
Sbjct: 727 LFDPFAQGSAAISRQYGGTGLGLSISRRLAEMLGGSIRVNSTYGEGSEFELSI 779


>gi|297158124|gb|ADI07836.1| two-component system sensor kinase [Streptomyces bingchenggensis
           BCW-1]
          Length = 494

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 52/238 (21%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMD--------LVALL---CSRICHDIISPIGAIHNSLEL-----LDEVG 44
           +   +   L  ++            L    +   H++ +P+ AI   L+L       +  
Sbjct: 220 LRTALNAMLQQLETAFVTREHAAGQLRRFIADASHELRTPLAAIRGYLQLDEKGMFKDEA 279

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGD--------IEQVIEDFIAV 96
                M  +   +      +  +                 D           +       
Sbjct: 280 ERARAMARMNAEAERMARLVDELLALARLDQRPRLRPAPVDLAGVARGAAADLSAQQPGR 339

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
              + +      +       +I+ NL        P    V +SV +     +  +   G 
Sbjct: 340 PVELHLPADCPVLADEPTLHQIVSNLLANVRIHTPADAGVRVSVVEEGGYGVLRVADEGP 399

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +              +   +    V      +   +         + +   L 
Sbjct: 400 GMGQRDAERIFDRFFRTGGAEGSGLGMAVVRAAVDAHGGTVRVTTAPGVGLTVVVALP 457


>gi|218441530|ref|YP_002379859.1| histidine kinase [Cyanothece sp. PCC 7424]
 gi|218174258|gb|ACK72991.1| histidine kinase [Cyanothece sp. PCC 7424]
          Length = 443

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 66/222 (29%), Gaps = 23/222 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ------------LIRLSSMSAIIRL 64
              +   H++ SP+  I  S+E++                        +     + ++  
Sbjct: 215 QFTADASHELRSPLTVIKTSVEVMQTHPERIHPADVEKLKGILSATNQMSYLVENLLLLA 274

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------TGEKIDLSRERAKI 118
           +  R    +    D +     +E V+E      +   ++              S + +++
Sbjct: 275 RTERFTDIHPQEQDLIPLHDLLEDVVEFLEVKAETKGITLKFEGVKDIFIYGDSAQLSRL 334

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVEST 175
             NL   A       GKVT+ +  ++      ++  G        P  F +    +V  +
Sbjct: 335 FSNLVNNALQYTQTEGKVTVKMNQNERYVSVLVEDTGIGIAPEHLPHIFDRFWRADVARS 394

Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +       +AH ++  +  +            L K
Sbjct: 395 YRSEGTGLGLAIASAIAHRHRGEITVKSQLGVGSSFQVRLPK 436


>gi|167469341|ref|ZP_02334045.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis FV-1]
          Length = 616

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNVESTID 177
             A     +G  V    ++  +  IF ++ +G      E       + Q+ D N      
Sbjct: 408 GNAVKFTQQGKIVVRVRREGNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIK 504


>gi|218779919|ref|YP_002431237.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761303|gb|ACL03769.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 746

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 68/241 (28%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +     +   + +  L   + HD  + +G +    +LL    DE   +   +  IR + +
Sbjct: 363 EQRLQEVQKREAIGTLTGGVAHDFNNILGVVLGHADLLLYDVDESDPQYFSLAEIRKAGL 422

Query: 59  SAIIRLKFMRLAFGYTG----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A   +  +             +D +  + +   ++   +     V++ +   K  ++ +
Sbjct: 423 RARDIIAQLLRYTRTEEKILAPLDIVPVIRESLNLLRSTLPGKVHVRMDFGEAKAIINGD 482

Query: 115 R---AKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKING 155
                + + NL + A  ++ +                                  L  +G
Sbjct: 483 GAMLNQAITNLCLNASQAMEQTGGMLEISLERVSLPSGHPSLPQDVRGGGFARLVLADSG 542

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I D    +    +   +    V  +   +   +  E         S   
Sbjct: 543 PGI-PPEHVDRIFDPYFTTKEVGEGSGLGLAVVHGIVKNHGGFIAVESSPGKGTAFSLYF 601

Query: 214 E 214
            
Sbjct: 602 P 602


>gi|186476808|ref|YP_001858278.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia phymatum STM815]
 gi|184193267|gb|ACC71232.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia phymatum STM815]
          Length = 949

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 64/240 (26%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMS 59
           A++   ++ S  L   L S I HD+ +P+ AI     +L        D   +L+      
Sbjct: 671 ARDALVSMESERLRNSLLSAISHDLRTPLTAIVGFSSMLAAQRDARTDAQGELVDAIHEE 730

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTGEKI 109
           A+     +             + L     +                    V VS   +  
Sbjct: 731 ALRMTGIVTNLLDMARLQAGSLKLNRQWSLLEETVGSALRDCRRTLARHPVTVSLPADLP 790

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPE 162
            L  +     ++  NLF  A   +P    + I  Q  +         ++   G       
Sbjct: 791 LLQLDAVLMERLFANLFENAAKYVPPDTPLMIGAQCIEENGTPFVRVTVDDTGPGLPPGM 850

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII---DD--HNVVLSALLE 214
               F +   G  ES      +       +A  +  ++        D           L 
Sbjct: 851 EARIFEKFTRGEKESAKPGIGLGLAICRAIAEAHGGKIGAANRIAADGRVEGARFWFTLP 910


>gi|159897381|ref|YP_001543628.1| GAF sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159890420|gb|ABX03500.1| GAF sensor hybrid histidine kinase [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 1055

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 82/234 (35%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
           +       ++S  L AL  L S + HD  + + +I  + + L   ++     + +Q+I  
Sbjct: 675 LENTRETLINSEKLRALGQLASGVAHDFNNLLASILGNAQFLLIHEDDADRRDALQVIER 734

Query: 56  S--------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           +                    +        D +    +  +         + +++  +  
Sbjct: 735 AAKDGAVTVRRIQEFARASETIYDDIVDLRDVVNIALEFTRPSWRDKTQQRGIKLDISTH 794

Query: 108 KIDLSRER-----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +       ++ +NL + A   LP+GG +TIS   +   + F++  NG     PE
Sbjct: 795 LAAAHVQGSAAELREVCVNLVVNAIDVLPQGGTITISTGTTGEWSYFTIADNGPGI-APE 853

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             T+I +    +    +   +     + +   ++ +LL E +  H      LL 
Sbjct: 854 DRTRIFEPFFSTKPIGEGTGMGLAVALSIVQRHRGKLLTEDVYPHGARFVVLLP 907


>gi|46578430|ref|YP_009238.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603988|ref|YP_968388.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|46447841|gb|AAS94497.1| sensory box histidine kinase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564217|gb|ABM29961.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris DP4]
 gi|311232361|gb|ADP85215.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           vulgaris RCH1]
          Length = 602

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 31/237 (13%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEVGI---------EDEVMQLIRLSS 57
               L  +     + + H++ +P+ +I    E L E               +++     +
Sbjct: 360 EREKLERIRRDFVANVSHELKTPLTSIKGYAETLLESPPASCEQAGAFMRTILKNANHMT 419

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA-------VDKRVQVSWTGEKID 110
                 L   R        V + +   ++ +              ++   +V      + 
Sbjct: 420 KMVNSLLVLARSEHKGEKRVLAEVDAAEVLRQTLREFQPVARRKAIELVCEVEGAVTVMA 479

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP------EKF 164
                 ++  NL   A    P G +V++S +       F  +  G            E+F
Sbjct: 480 DRDGLGEVFRNLMDNAMKYSPEGTRVSVSARPGAGVATFCFRDEGPGIPENSKERIFERF 539

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALL--EK 215
            +I      S   S  +       +   +   +  E   D            L   +
Sbjct: 540 YRIEREGDTSKEGSAGLGLAICRRIVRSHGGEIWVESPLDPATRRGAAFFITLNTPR 596


>gi|83311900|ref|YP_422164.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946741|dbj|BAE51605.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 572

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 57/228 (25%), Gaps = 24/228 (10%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL--------- 55
           +  + + ++  A + S   HD+ +P+  I    ++LD    +    +             
Sbjct: 342 LERSNADLERFAYVAS---HDLKTPLRVITGYAQMLDRRYRDKLDEEANEYIAFLTAGTK 398

Query: 56  -SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L + R+            G      +      +++       G    +  +
Sbjct: 399 RMYRLITDLLHYSRINSQAKPLQPVSAGRATDIAISNLKAVIEESGASVSVGPLPTIQAD 458

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEKFTQIV 168
            +++      +   ++                        F++K NG     PE F +I 
Sbjct: 459 ESQLSSLFQNLLGNAIKYRHPERKPEIRIEAVRLSGTLWRFAVKDNGIGI-EPEHFERIF 517

Query: 169 DGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                    S  D   I       +      R+  E            
Sbjct: 518 VIFQRLHSDSAYDGTGIGLALCQRIVTRLGGRIWVESRPGEGSTFFFT 565


>gi|310827154|ref|YP_003959511.1| sensor histidine kinase KdpD [Eubacterium limosum KIST612]
 gi|308738888|gb|ADO36548.1| sensor histidine kinase KdpD [Eubacterium limosum KIST612]
          Length = 907

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 56/232 (24%), Gaps = 21/232 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE----------------LLDEVGIED 47
                     + +     I HD+ +P+  I  S                  LL ++  + 
Sbjct: 667 KARLETEKEKMRSNFLRAISHDLRTPLTGILGSSSALLENIGELDISTQKKLLRDIKDDS 726

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           E +  +  + +S     +       +  +V+ ++G               K         
Sbjct: 727 EWIIRMVENLLSVTRIGEGKVDLKKHPEAVEEIVGEAVAIIRKRFDHTDIKVEVPDTLLM 786

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++++NL   A         + + VQ+   +  F +  NG            
Sbjct: 787 VSMDGTLIEQVMINLMENAIKYAGSHPVLDVKVQNLGKKARFIVGDNGEGISETMLPHIF 846

Query: 168 VDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +     I       +   +   L      +     S  L 
Sbjct: 847 EGYMGDEEKSSDSRRGMGIGLTICKSIVDAHGGTLKARNKQEGGAEFSFELP 898


>gi|290769852|gb|ADD61624.1| putative protein [uncultured organism]
          Length = 380

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIR 54
           +++++   L  +    DL         H++ +P+  +   LE+  E   + +     L+R
Sbjct: 143 LSQSVNHMLDRLAHSFDLQRQFAGNAAHELKTPLAIMQAKLEMFAEEHPDTDSEITDLLR 202

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWT 105
             +         +R     +                       +          +     
Sbjct: 203 FQTDQVSRLASLVRTLLEMSDLQSIPREDHIELAPLADEIVADLTPLAQRRSITLFQECE 262

Query: 106 GEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              I  S     ++L NL          GG V I+++  ++  +  +   G       + 
Sbjct: 263 DVSIKGSDTLIYRLLFNLVENGIKYNTPGGSVHITIRQKESSAVLRVADTGCGIPEEYRT 322

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +               +    +    V  +A  +   +  E  D H  V +  L 
Sbjct: 323 SVFQPFFRVDKSRSREMGGVGLGLALVREIALLHGGTVTAEPADGHGTVFTVTLP 377


>gi|294507115|ref|YP_003571173.1| Signal transduction histidine kinase [Salinibacter ruber M8]
 gi|294343443|emb|CBH24221.1| Signal transduction histidine kinase [Salinibacter ruber M8]
          Length = 659

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 64/236 (27%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-- 58
           +++     + ++     +   + HD+ + +  +   +ELL +      +   IR S    
Sbjct: 285 LSQTQRHRMETL---GRMTMGVAHDLNNLLSGLIGHIELLKDQVERASLTDSIRPSIETI 341

Query: 59  -------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                 +  F      D +     + +         + +++S  
Sbjct: 342 ETTAEDGAALIEKLQRYIRHDTQQHFEPLSLTDLIEDCITLTEPYWYNEPRRQGIEISVE 401

Query: 106 GEKIDLSR------ERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLA 158
            +  D+        E  ++ +NL + A  ++P GG     +  D   +    +   G   
Sbjct: 402 TDLADVPDVLGAASELREVFVNLVLNAVQAMPEGGTLRFDTYTDRAGQVCVDVGDTGIGM 461

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +             D   +       +  E++  +            +    
Sbjct: 462 SDEVQQNIFEPLFTTKGDDGTGMGLAASYGIVQEHEGTIDVSSEPGEGTRFTLTFP 517


>gi|294506227|ref|YP_003570285.1| two-component system sensor protein [Salinibacter ruber M8]
 gi|294342555|emb|CBH23333.1| two-component system sensor protein [Salinibacter ruber M8]
          Length = 1111

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 56/245 (22%), Gaps = 34/245 (13%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----------- 50
            AK     L+ M    L  + + H+I +P+ +I    E++ +                   
Sbjct: 861  AKEEAERLNRMKSAFL--ANMSHEIRTPLTSIIGFAEVIGDEATSLLEHSDSPPDAVTAL 918

Query: 51   -QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------- 101
             Q   L   S    L+ +      +      + L      + D +A    +         
Sbjct: 919  DQFADLIEESGHRLLETLDTVLNLSRLEAGEMELDCSPLDLADEVAEATDLFEPQALTEG 978

Query: 102  -------VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKIN 154
                                    L NL   A      GG V +      ++    ++  
Sbjct: 979  IDLQGETAEGPLWARVDEGGLRIALQNLISNALKYTEEGGTVRVRAGRRGDDVALEVEDT 1038

Query: 155  GNLARFPEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            G               +        T +   +          +    +  E         
Sbjct: 1039 GVGMDPDHVPELFEPFRQESEGTGRTYEGTGLGLAVTKQAIEQMGGTIAVETAKGDGSCF 1098

Query: 210  SALLE 214
            +  + 
Sbjct: 1099 TVRVP 1103


>gi|294138931|ref|YP_003554909.1| osmolarity sensor protein EnvZ [Shewanella violacea DSS12]
 gi|293325400|dbj|BAJ00131.1| osmolarity sensor protein EnvZ [Shewanella violacea DSS12]
          Length = 436

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 69/213 (32%), Gaps = 8/213 (3%)

Query: 8   NLSSMDL-VALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRL 64
           ++  ++   ALL + I HD+ +P+  I  + E++  ++  ++D ++  I          +
Sbjct: 224 SMKQLEQDRALLMAGISHDLRTPLTRIRLASEMMVAEDQYLKDGIVHDIEDMDAIINQFI 283

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
            ++R         + +  L       E        V ++   E    S    ++L NL  
Sbjct: 284 AYIRQDQESIREQEQINHLIQDVVQAESNREGKIAVVLNECPEIPLQSIAIKRVLSNLVE 343

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDI 181
            A        ++  S         FS++ +G      E    F     G+         +
Sbjct: 344 NAFRYGNGWVRL--SSHFDGRRVGFSVEDDGPGIPESEIPKLFQPFTQGDTARGSVGSGL 401

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   ++  ++        +     L 
Sbjct: 402 GLAIIKRIVDRHQGEVVLTNRVAGGLHAQVWLP 434


>gi|305681901|ref|ZP_07404705.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Corynebacterium matruchotii ATCC 14266]
 gi|305658374|gb|EFM47877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Corynebacterium matruchotii ATCC 14266]
          Length = 507

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 19/210 (9%)

Query: 24  HDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFM---------RLAFG 72
           H++ +PI  I   LELLD       +  ++L           +  +           +F 
Sbjct: 281 HELRTPITVIRGHLELLDTATHDQRERSVKLCMDELDRMTRMVNDLLTLAIADADGPSFL 340

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
           +   +D      DIE   +       +V     G  +  ++   + +L L   A      
Sbjct: 341 HMQPIDLTELTIDIEDKADMVSGGRAKVTEIAEGFVLADAQRITEAILELTRNAVKYTND 400

Query: 133 GGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID-----SHDIQFY 184
              + I   +   +  FS++  G           F +   G    + D        +   
Sbjct: 401 DSPIIIGSTNKDGQVGFSVRDFGPGIDSATQEILFHRFNRGEQSPSSDQVPKKGAGLGLS 460

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V ++A  +      +              
Sbjct: 461 IVKVIAEAHGGHAWVDSTPGLGSTFGITFP 490


>gi|170748989|ref|YP_001755249.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655511|gb|ACB24566.1| PAS/PAC sensor signal transduction histidine kinase
           [Methylobacterium radiotolerans JCM 2831]
          Length = 527

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 53/217 (24%), Gaps = 22/217 (10%)

Query: 18  LCSRICHDIISPIGAIHNSL-------------ELLDEVGIEDEVMQLIRLSSMSAIIRL 64
           + S + H+I  P+ AI + L             E+L      +E       +        
Sbjct: 300 MASTLAHEINQPLTAIASYLKGCRRLLSRMEGAEVLKLSDAVNEAADQALRAGQVIRHLR 359

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           +F+    G          + +   +           V  +       +  +R ++   L 
Sbjct: 360 EFVTRGEGERHIEGLPKLIEEASALALVGAREKGVHVTFALDPAAPLVLADRIQVQQVLL 419

Query: 124 MVAHASLPRGGKVTISVQ-------DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
            +   ++                           +   G+    P+   Q+    V +  
Sbjct: 420 NLIRNAIEAMQGEPRRELVVATRALPVDGLVEVQVSDTGSGI-APDVAAQLFQPFVTTKA 478

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +   +       +   +  R+      D        L
Sbjct: 479 NGMGVGLSICRTIVEAHGGRISAGPGPDGGTEFRFTL 515


>gi|144900213|emb|CAM77077.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1183

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 69/236 (29%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+       +    +L  + + H+I +P+  +    +LL+++ +  E  ++ R+   SA
Sbjct: 519 LAEAKQTAEDASQAKSLFLATMSHEIRTPMNGVLTMAQLLEDMPLAQEQKEMARVIRDSA 578

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
              L  +     ++      + L  IE  + D I                     +  + 
Sbjct: 579 TALLTIINDILDFSKIESGKLELEIIEMSLSDVIESVAELLAPRASEKGIGLMTFIDPAL 638

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
               +  +    +I+ NL   A     +G     +   +     F++   G      E+ 
Sbjct: 639 PDLFLGDATRLRQIVTNLAGNAVKFTDKGYVRISAEAAADGHVRFTISDTGIGLN-DEQQ 697

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +        +        +       L       +  +            L 
Sbjct: 698 AKLFEPFSQADASISRRYGGTGLGLSICRRLVAMMDGEIGVDSQVGQGSSFWFSLP 753


>gi|297578936|ref|ZP_06940864.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
 gi|297536530|gb|EFH75363.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae RC385]
          Length = 1331

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 SRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|83815508|ref|YP_445249.1| FixL-related histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756902|gb|ABC45015.1| FixL-related histidine kinase [Salinibacter ruber DSM 13855]
          Length = 601

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 64/236 (27%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-- 58
           +++     + ++     +   + HD+ + +  +   +ELL +      +   IR S    
Sbjct: 227 LSQTQRHRMETL---GRMTMGVAHDLNNLLSGLIGHIELLKDQVERASLTDSIRPSIETI 283

Query: 59  -------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                 +  F      D +     + +         + +++S  
Sbjct: 284 ETTAEDGAALIEKLQRYIRHDTQQHFEPLSLTDLIEDCITLTEPYWYNEPRRQGIEISVE 343

Query: 106 GEKIDLSR------ERAKILLNLFMVAHASLPRGGK-VTISVQDSKNENIFSLKINGNLA 158
            +  D+        E  ++ +NL + A  ++P GG     +  D   +    +   G   
Sbjct: 344 TDLADVPDVLGAASELREVFVNLVLNAVQAMPEGGTLRFDTYTDRAGQVCVDVGDTGIGM 403

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +             D   +       +  E++  +            +    
Sbjct: 404 SDEVQQNIFEPLFTTKGDDGTGMGLAASYGIVQEHEGTIDVSSEPGEGTRFTLTFP 459


>gi|326940924|gb|AEA16820.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 457

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 220 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 276

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    +++    +  
Sbjct: 277 SRKMSALISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASIELTTNIEE 336

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 337 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 396

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 397 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESRLGEGSTFTFKLP 452


>gi|315180030|gb|ADT86944.1| para-aminobenzoate synthase [Vibrio furnissii NCTC 11218]
          Length = 568

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/226 (10%), Positives = 59/226 (26%), Gaps = 22/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            S        + I H++ +P+  +  S ELL +  ++ E +  +     S  +    +  
Sbjct: 200 ESEKATKEFVAMINHELRTPLNGLLGSAELLSDTSLDPEQLSYLTNLQHSGDMLRVIIND 259

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSR 113
              ++     ++ L   +   +D       +                   +    I    
Sbjct: 260 LLDFSKMNAGMMQLILTQFRWQDLEHTLNGIFSPKAREKKIEFVVNTRGEFPTYWIGDVE 319

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD---- 169
              +IL+NL   A       G VT++ +      +  +   G         T        
Sbjct: 320 RINQILVNLVGNAIKFT-HRGAVTVAARWVDERLLLRISDTGIGIPLAAHDTLFDPFTQV 378

Query: 170 -GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +     +   +       L       +    ++         + 
Sbjct: 379 DRSSSRQYEGTGLGLAICKNLVELMNGSIDFSSVEGEGTEFFVSIP 424


>gi|304317061|ref|YP_003852206.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302778563|gb|ADL69122.1| integral membrane sensor signal transduction histidine kinase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 456

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 62/219 (28%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLK------ 65
           L A +   I H++ +P+  + + LE + +       E M  +    +     +       
Sbjct: 232 LRAQMTQNIAHELRTPLSTLKSHLEAIIDGVWEPSKERMVSLYEEVVRLSNLINDIELLN 291

Query: 66  -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 +++        D +  L    + I           +           + +++++
Sbjct: 292 KIEIDNLKINKVRFNLSDLIKSLLINYESIFINKNQHLEKNIEDGISIFADKDKISEVVI 351

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--T 175
           NL   A+     GG + + +       + S+  +G      +    + +           
Sbjct: 352 NLLANANKYTGEGGNIKVKLYKEGKYAVLSVSDDGIGIPKEDLPFIYERFYRSEKSRNRE 411

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +   +  E I +     +  L 
Sbjct: 412 YGGSGLGLSITKAIIKAHNGMINAESILNEGTKFTVKLP 450


>gi|253573666|ref|ZP_04851009.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
 gi|251847194|gb|EES75199.1| ATP-binding region ATPase domain-containing protein [Paenibacillus
           sp. oral taxon 786 str. D14]
          Length = 354

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 60/214 (28%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S + H+I SP+ +I      L    +  E          S   RL  M        ++++
Sbjct: 136 SNVSHEIQSPLTSIRGFARALRRPDLSPEKRNHYLEIIESESRRLAQMSDNLLKLSALET 195

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------------KILLNLFMV 125
                   +   D    +  +         ++  +                ++ +NL   
Sbjct: 196 DRASLQTNRFRLDRQLQNVVLACEPQWLAKNIQIQMEVSALEVEGAEDLLSQVWMNLLHN 255

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHD 180
           +    P GG++ +S+       + ++  NG      +    F +    +     +     
Sbjct: 256 SIKFTPEGGEIRVSLTSEGERAVVTVADNGIGMFEQDLVHIFERFYKADKSRTRSDGGSG 315

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V  +   ++  +            +  + 
Sbjct: 316 LGLSIVKKIVDIHQGEITVTSEPGKGSSFNVFIP 349


>gi|229080387|ref|ZP_04212911.1| hypothetical protein bcere0023_30330 [Bacillus cereus Rock4-2]
 gi|228702949|gb|EEL55411.1| hypothetical protein bcere0023_30330 [Bacillus cereus Rock4-2]
          Length = 281

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 59/215 (27%), Gaps = 21/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------------RLKFMR 68
            I HD+ +P+ +I    E++     +    ++ + + +                    ++
Sbjct: 64  NISHDLKTPLSSIKGYSEVIGNREYKITAQEMYQYAEVIQNKSIYIEKLIDDLKLTYQLK 123

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID------LSRERAKILLNL 122
            A          I     E +IE         ++       +            ++ +NL
Sbjct: 124 NALLPIHKTKVDIVNLTRETIIEFMNMPQYENRLIEFECPQEELIIKADQGLIQRVTVNL 183

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID---SH 179
              A         + + ++ +    I +++ NG+     +           +  D     
Sbjct: 184 LNNALIHTDVKTVIQVRIKQTSGYIIVTIEDNGDGINKNDLPHIFDQYFRGTNTDPKSGS 243

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +   +   +  E        ++  L 
Sbjct: 244 GLGMAIVKEIIVAHGGEIAVESTKGKGTKITFQLP 278


>gi|170681341|ref|YP_001742533.1| phosphate regulon sensor protein [Escherichia coli SMS-3-5]
 gi|170519059|gb|ACB17237.1| phosphate regulon sensor protein PhoR [Escherichia coli SMS-3-5]
          Length = 431

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGSEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|254285143|ref|ZP_04960109.1| sensor histidine kinase [Vibrio cholerae AM-19226]
 gi|150425146|gb|EDN16923.1| sensor histidine kinase [Vibrio cholerae AM-19226]
          Length = 497

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLA---- 70
           L + + HD+ +P+GAI  S   L +  +    +   +L+   +       + +       
Sbjct: 273 LLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLTSIAEQGERLNRSLTKLLDIT 332

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        V+    +G +   +   +   K    S        S    ++L+NL 
Sbjct: 333 RYTATALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIESQPMLVELDSLLIEQVLINLV 392

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHD 180
             A    PRG ++ I+      +   ++  NG      E   +I D       +  D   
Sbjct: 393 ENAAKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PDEALPRIFDRFYRVEGNHADGTG 451

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      ++   ++  +     +      +  + 
Sbjct: 452 LGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|126658537|ref|ZP_01729684.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
 gi|126620124|gb|EAZ90846.1| serine/threonine kinase with two-component sensor domain [Cyanothece
            sp. CCY0110]
          Length = 3557

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 57/241 (23%), Gaps = 28/241 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMS 59
            + +       +    +   + + H++ +P+  I    ++L     +  +    I++    
Sbjct: 3089 LQQAKELAEEANQAKSAFLANMSHELRTPLNGIMGYAQILQRSPQLSSDHKSNIQVIYQC 3148

Query: 60   AIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                   +        S    +      +  +  +        S
Sbjct: 3149 GSHLLTLIEDILDISKIEAGRMELYCQEFPLNSFLQGVVEICRIKAEQKSLTFTYERPSS 3208

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASL-----PRGGKVTISVQDSKNENIFSLKINGNLA 158
                     +   ++LLNL   A               T S  +      F ++  G   
Sbjct: 3209 LPTVINTDQKRLRQVLLNLLGNAIKFTSLGSIKFRVSFTSSRTNHNGFLQFEIEDTGVGI 3268

Query: 159  RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               E+  +I              +   +       L      +L  E       + S +L
Sbjct: 3269 -SAEQLDRIFLPFEQVGSLSQKAEGTGLGLAISQKLLQMMGTQLTVESTLGVGSIFSFIL 3327

Query: 214  E 214
             
Sbjct: 3328 P 3328


>gi|319424530|gb|ADV52604.1| periplasmic sensor histidine kinase for osmolarity response, EnvZ
           [Shewanella putrefaciens 200]
          Length = 438

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  ++  ++D ++  I     
Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R        +  +  L       E   A +  + ++   E +  +    ++
Sbjct: 280 IISQFIAYIRQDQEANRELAQINKLIQDIVQAEANRAGEIEMVLTDCPEALFQAIAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS Q       FS++ NG      +    F     G++   
Sbjct: 340 LSNLVENAFRYGS--GWIRISSQYDGKRIGFSVEDNGPGIDESQIQKLFQPFTQGDIARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   ++ ++      +  +     L 
Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQITLSNRKEGGLKAQVWLP 436


>gi|170725399|ref|YP_001759425.1| PAS/PAC sensor-containing hybrid histidine kinase [Shewanella
           woodyi ATCC 51908]
 gi|169810746|gb|ACA85330.1| PAS/PAC sensor hybrid histidine kinase [Shewanella woodyi ATCC
           51908]
          Length = 793

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 64/251 (25%), Gaps = 39/251 (15%)

Query: 2   AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           AK       S    A           S + H++ +P+ A+  SL+LL       E M+LI
Sbjct: 254 AKQRSLEFKSAKEFAKKASQTQSEFLSMMNHELRTPMNAVIGSLDLLRLSKQSSESMELI 313

Query: 54  RLSSMSAIIRLKFM-------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             ++ SA   +  +                     S++  I       +        +  
Sbjct: 314 ETATSSATNLMNILNDILDINKIESGKMQLEHSPFSINETIDGLVKSFLPSAQKKQIQLN 373

Query: 101 QVSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIF 149
               +     +  +     ++L NL   A               + +             
Sbjct: 374 IKESSMVPSQVIGDEKKTRRVLYNLISNAIKFTDLKCTQGRVNLNCEVSQQSEELLYIKL 433

Query: 150 SLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
           +++ NG      ++  ++                   +       L  +   ++     +
Sbjct: 434 TIEDNGIGINESDQS-KLFAPFTQAQKSVTREYGGTGLGLPICRSLVQQMGGKITLTSKE 492

Query: 204 DHNVVLSALLE 214
                 +  L 
Sbjct: 493 GVGSTFTVELP 503


>gi|116753943|ref|YP_843061.1| multi-sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
 gi|116665394|gb|ABK14421.1| multi-sensor signal transduction histidine kinase [Methanosaeta
           thermophila PT]
          Length = 713

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/225 (10%), Positives = 55/225 (24%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
           +       + ++       + HD+ SP+  I   +  L E          +  ++ I  S
Sbjct: 471 RTREIERKNAEME-RFVYTVSHDLRSPLITILGFIGYLREDLRSGQTDKVESDIRFIENS 529

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGEKID 110
            +     L            +     +   + V E    ++        +          
Sbjct: 530 VLKMDRLLTNTLELSRIGRVISPPEDVYFSDIVREVLSDMNAKLRGVDIIVADDMPSVHV 589

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-D 169
                 ++L NL   +           I +     +  F +K NG               
Sbjct: 590 DRMRIGEMLANLIDNSIKYTANTDHPRIEIGWRPEDAAFFVKDNGIGIDPKYHDKVFDLF 649

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +          V  +   +  R+  E        +   L 
Sbjct: 650 YRIDRSTPGTGAGLAIVKKIVEVHGGRIWIESEGGKGCTVCFTLP 694


>gi|254238305|ref|ZP_04931628.1| hypothetical protein PACG_04438 [Pseudomonas aeruginosa C3719]
 gi|126170236|gb|EAZ55747.1| hypothetical protein PACG_04438 [Pseudomonas aeruginosa C3719]
          Length = 750

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 58/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+           +   + + H+I +P+  I    ELL E  + +   Q +R  + +  
Sbjct: 248 AKDQAEAADRAK--SRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGE 305

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSR 113
             L  +     +    ++      ++         V+       +               
Sbjct: 306 GLLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 365

Query: 114 ERA--------KILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFP 161
           +          ++L NL   A      G       +            S+  +G      
Sbjct: 366 DGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLVRSAGCERLRLSVADDGIGI-PE 424

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L      R+  E            +E
Sbjct: 425 EMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIE 483


>gi|315185889|gb|EFU19654.1| PAS/PAC sensor signal transduction histidine kinase [Spirochaeta
           thermophila DSM 6578]
          Length = 616

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 67/204 (32%), Gaps = 14/204 (6%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF-------MRLAFGYTGS 76
           H+I +P+G I   +E+L    +  E+ + +            F          +    G+
Sbjct: 396 HEINNPLGIISAYIEVLKLQDLSPEISRKLEKIQNEITRIQNFVSSLGRLADASRMERGT 455

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSW----TGEKIDLSRERAKILLNLFMVAHASLPR 132
           VD +  + D+  + +      +    +            +    ++L+NL + +  +L  
Sbjct: 456 VDLVEMVKDVLLLFQHLFQEKRITVYTDLPETPVRIEGDAGRLKQLLINLVLNSVEALLH 515

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLA 190
           GG + I ++  + + + S+  NG+     E   +I      +     S  +       +A
Sbjct: 516 GGWIRIRLERKEGKILLSVSDNGHGI-PKEIQDRIFRPFFSTKAGKQSTGLGLAICEHIA 574

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
             +   +            +    
Sbjct: 575 KLHGGEIGFTSTPGEITTFTVTFP 598


>gi|268611079|ref|ZP_06144806.1| histidine kinase [Ruminococcus flavefaciens FD-1]
          Length = 479

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 28/234 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSM 58
           + KN  F          L + + HD+ +P+  I    E++ +     E +  + + +   
Sbjct: 252 LKKNRDFQNE-------LLANVSHDLRTPLTMIKGYAEMIRDISREDEKQCAEDVAVIVE 304

Query: 59  SAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            A                 +             D++  + D  + +           ++ 
Sbjct: 305 EADRLTALVNEILEYSELQMSDSETVMNDVVLSDTVTSVADSFEKLYSKEGYVFERNIAD 364

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    + + NL   A           +S++  K + I  +  +G      E  
Sbjct: 365 NIHVKGNAARLQRAVYNLLDNAVRHAGEDKWTGVSLRTEKGKAIIEISDHGKGIAPDEL- 423

Query: 165 TQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I D        S      +    V  +  ++      E +     V S  L+
Sbjct: 424 EHIWDRYYTRRQRSGKGVSGLGLAIVKQIISQHNGICRAESVVGTGSVFSIELK 477


>gi|213969967|ref|ZP_03398100.1| bacteriophytochrome [Pseudomonas syringae pv. tomato T1]
 gi|301382239|ref|ZP_07230657.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato
           Max13]
 gi|213925292|gb|EEB58854.1| bacteriophytochrome [Pseudomonas syringae pv. tomato T1]
          Length = 998

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    ++D   +         
Sbjct: 523 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRRALG 582

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 583 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIELNC 642

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I      ++ +F +  +G     
Sbjct: 643 TSAQGLVIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGIGIPA 702

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  +   D   V S  L 
Sbjct: 703 QHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTLP 758


>gi|182680099|ref|YP_001834245.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
 gi|182635982|gb|ACB96756.1| histidine kinase [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 356

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/230 (9%), Positives = 69/230 (30%), Gaps = 28/230 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
             + A   +   H++ +P+ ++   +E L     D+       + ++R  +      +  
Sbjct: 124 ERMRADFIANASHELRTPLSSLLGFIETLQGPAKDDENARIRFLGIMRDQARRMARLIDD 183

Query: 67  M--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +         L       VD  + L  + + +      +  +    + + + +  +  ++
Sbjct: 184 LLSLSRIEQNLHVRPQAPVDLALVLRHVVETLTPMAHDNHVMLNLDSPDSLIVRGDYDEL 243

Query: 119 LLNLFMVAHASLPRGGKVTISVQD--------SKNENIFSLKINGNLARFPEKFTQIVDG 170
           L  +  +   ++  G  V+ + +              I S++  G      E   ++ + 
Sbjct: 244 LRVVENLVENAIKYGLPVSHNHKPEIVITLAKRSRNAIMSVRDFGPGI-ASEHLPRLTER 302

Query: 171 NV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +    V  +   ++ RL  +         +  L 
Sbjct: 303 FYRVDNRQSRDKGGTGLGLAIVKHILARHQGRLGIDSRLGEGSTFNVALP 352


>gi|91790648|ref|YP_551600.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
 gi|91699873|gb|ABE46702.1| PAS/PAC sensor hybrid histidine kinase [Polaromonas sp. JS666]
          Length = 799

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 55/235 (23%), Gaps = 27/235 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSS 57
                +  M   +   S + H++ +P+ +I  SL L+      +   +   ++ +   + 
Sbjct: 300 TELRRIDRMK--SEFVSTVSHELRTPLTSIRGSLGLIAGGVAGELPAMAKSLVGIASNNC 357

Query: 58  MSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWT 105
              I  +                    V+    L       E F             +  
Sbjct: 358 ERLIRLINDILDSEKIESGKMHFELQQVELQPLLAQALAANEGFAGQHNVKLALDAPADA 417

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    +++ NL   A    P    V I +  S       +  +G      E   
Sbjct: 418 VRVSVDSDRLTQVVTNLLSNAVKFSPPASCVHIRLLRSGGRVRVEVADSGPGI-LEEFRK 476

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I                   +       +  +    +          V    L 
Sbjct: 477 RIFQKFSQADTSDTRQKGGTGLGLNISRAIVEQMGGSMGFTTKAGVGTVFHFELP 531


>gi|187730927|ref|YP_001879108.1| phosphate regulon sensor protein [Shigella boydii CDC 3083-94]
 gi|187427919|gb|ACD07193.1| phosphate regulon sensor protein PhoR [Shigella boydii CDC 3083-94]
          Length = 431

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|325274858|ref|ZP_08140873.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
 gi|324100006|gb|EGB97837.1| multi-sensor hybrid histidine kinase [Pseudomonas sp. TJI-51]
          Length = 917

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 62/242 (25%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 274 MARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLSTIEKSA 331

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    + D   ++       +      V    
Sbjct: 332 DNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLVYRDT 391

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++     +   +   S++  G     
Sbjct: 392 PTSLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLDDEHEDHAQLRISVQDTGIGLSP 451

Query: 161 PEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +  T     +              +       L  +    +  +           S  L
Sbjct: 452 QDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLNL 511

Query: 214 EK 215
            K
Sbjct: 512 PK 513


>gi|302341832|ref|YP_003806361.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
 gi|301638445|gb|ADK83767.1| multi-sensor hybrid histidine kinase [Desulfarculus baarsii DSM 2075]
          Length = 1276

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 1    MAKNICFNL-----SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGI 45
            +A+     L      S  + AL  L   I H+  + + AI    EL              
Sbjct: 879  LAQQERQRLEEQLRQSQKMEALGTLAGGIAHEFNNLLAAIMGYSELAMARMTTGHACEDE 938

Query: 46   EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW- 104
              +V+     +       L F R +      + +L  + +   ++   + +   ++ +  
Sbjct: 939  VTQVLAAAERAKGLVRQILTFSRESDYELRPLRALPVVLEALALLRASLPITVDLRQNLA 998

Query: 105  -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGN 156
                 +  S    ++++NL   A  +LP+ G         +            S+  +G 
Sbjct: 999  SEAVIMADSTALHQVVMNLCTNAAHALPKDGGFIEVSLADEPDPAGGPGWLRLSVADDGA 1058

Query: 157  LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +I +    +    +   +    V  +      ++          V    L 
Sbjct: 1059 GVDPL-IRGRIFEPFFTTKAPGEGTGLGLSVVHGIVSRLGGQINVTDRPGGGSVFGVRLP 1117


>gi|256838748|ref|ZP_05544258.1| two-component system sensor histidine kinase/response regulator
           [Parabacteroides sp. D13]
 gi|256739667|gb|EEU52991.1| two-component system sensor histidine kinase/response regulator
           [Parabacteroides sp. D13]
          Length = 905

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 4   NICFNLSSMDLVALLC-------------SRICHDIISPIGAIHNSLELL---DEVGIED 47
           N     ++  L++L               + + H++ +P+  I   L+ L          
Sbjct: 377 NRKMRQANRKLISLNAEMKEVTAQKLQFFTNVSHEVRTPLTLILAPLDRLIISLRESPYA 436

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDK 98
             + LI+ ++   +  +  +       G  +                             
Sbjct: 437 SDLGLIQKNANRLLRVINQILDFRKVEGKQEKLAVREIDLVPFVGEIKSYFDSMASVRAI 496

Query: 99  RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
               + + ++  L  +     K+ +NL   A    P GG V I + + ++     +   G
Sbjct: 497 AYTFTSSIKQCTLWIDPDLLEKVFVNLLSNAFKFTPEGGSVRIELTEEEDRVFIQVIDTG 556

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +             E       I  + V    H +   +  E         +  L K
Sbjct: 557 SGIQPGNLPHLFDRFYTEDRSMGTGIGLHLVKEYIHMHGGEIRVESEPGQRTTFTVCLRK 616


>gi|213051735|ref|ZP_03344613.1| osmolarity sensor protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426888|ref|ZP_03359638.1| osmolarity sensor protein [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 447

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 61/205 (29%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 232 TLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 291

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +         + + +         + + N+ + A      
Sbjct: 292 PMEMADLNSVLGEVIAAESGYEREINTALQAGSIQVKMHPLSIKRAVANMVVNAARYGNC 351

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G      +    F   V G+   +     +    V  +
Sbjct: 352 WIKVSSGTESH--RAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRI 409

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 410 IDNHNGMLEIGTSERGGLSIRAWLP 434


>gi|170751607|ref|YP_001757867.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
 gi|170658129|gb|ACB27184.1| multi-sensor hybrid histidine kinase [Methylobacterium radiotolerans
            JCM 2831]
          Length = 1224

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 72/243 (29%), Gaps = 29/243 (11%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
            + +       S  L A+  L   + HD  + +  I +S +LL    + ++          
Sbjct: 835  LLQAEEALRQSQKLEAVGQLTGGVAHDFNNLLTVIKSSTDLLKRPDLTEDRRVRYIAAIS 894

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
              +  ++      L F R         D+   +  I +++E        V +    E   
Sbjct: 895  DTVDRAAKLTGQLLAFARRQALRPEVFDAGRSVKSIGEMVETLTGARIAVSIRVGDEPCH 954

Query: 111  LSRERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKIN 154
            +  + ++    L+N+ + A  ++                  +        +    +L   
Sbjct: 955  IHADPSQFDTALVNMAVNARDAMDGEGRLDISVEAVGIVPAMRSHPAMVGDYVRIALSDT 1014

Query: 155  GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            G+     E+  +I +    +        +    V   A ++   +  E         +  
Sbjct: 1015 GSGI-PAEQIDRIFEPFFTTKGVGQGTGLGLSQVFGFAKQSGGEVKVESEVGRGTTFALY 1073

Query: 213  LEK 215
            L +
Sbjct: 1074 LPR 1076


>gi|160945119|ref|ZP_02092345.1| hypothetical protein FAEPRAM212_02638 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442850|gb|EDP19855.1| hypothetical protein FAEPRAM212_02638 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105635|emb|CBL03179.1| Signal transduction histidine kinase [Faecalibacterium prausnitzii
           SL3/3]
          Length = 449

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
            +     ++  +     + + H++ +P+ +I    EL++    +     +  + I   + 
Sbjct: 212 SDRILRENNEKMRQEFTANVSHELKTPLTSISGYAELIETGIAKPEDVPDFGRKIHSEAT 271

Query: 59  SAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKR--VQVSWT 105
             I  +  +                   +VD L    +  +  +            +  +
Sbjct: 272 RMIQLVNDILQLSKLDTVSETGDTPVMETVDLLEVAKECVERQKLNARRAYISLTYLGES 331

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +       ++  NL   A      G     I+  +       ++  NG         
Sbjct: 332 APVLGSRALLDELCQNLCDNAIRYNRPGGKVQIITTCNRDGHCSLTVADNGIGIPREAQA 391

Query: 163 -KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +    +   +       +    V  +A  +  R+  E   D    ++    
Sbjct: 392 SVFERFYRVDKSRSKATGGTGLGLAIVKHIARIHNARIKLESQVDVGTTITVTFP 446


>gi|158319789|ref|YP_001512296.1| histidine kinase [Alkaliphilus oremlandii OhILAs]
 gi|158139988|gb|ABW18300.1| histidine kinase [Alkaliphilus oremlandii OhILAs]
          Length = 597

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 70/224 (31%), Gaps = 17/224 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLI 53
             +    +    ++A+  L S + H+I +P+G I N   LL+      +  I+  ++ + 
Sbjct: 360 KSSQVQLIQQNKMIAIGQLASGVAHEIRNPLGIIRNYNYLLESRLKGKDSVIDKSIIYIN 419

Query: 54  ---RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---QVSWTGE 107
                +       L + R++      ++    +  +  +    + ++  +          
Sbjct: 420 NAVERAGSIVDELLNYTRVSEDKKCLINIKGQIESVLTLESATLKMNNVIATFDCGEDLN 479

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                     ILLNL   +  ++P GG++ I   + K          G      E    I
Sbjct: 480 IKMHRYSLHHILLNLIDNSIDAMPEGGEINIICTNKKKAIEIVFSDTGEGI-SKESLENI 538

Query: 168 VDGNVESTIDSHDIQF--YYVILLAHENKIRLLPEIIDDHNVVL 209
                 +      I    Y V     +N   +  E   D     
Sbjct: 539 FHPFYTTKNVGKGIGLGMYIVYNEVRKNGGEIRVESQLDKGTTF 582


>gi|150009954|ref|YP_001304697.1| two-component system sensor histidine kinase/response regulator
           [Parabacteroides distasonis ATCC 8503]
 gi|149938378|gb|ABR45075.1| two-component system sensor histidine kinase/response regulator,
           hybrid [Parabacteroides distasonis ATCC 8503]
          Length = 887

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 4   NICFNLSSMDLVALLC-------------SRICHDIISPIGAIHNSLELL---DEVGIED 47
           N     ++  L++L               + + H++ +P+  I   L+ L          
Sbjct: 359 NRKMRQANRKLISLNAEMKEVTAQKLQFFTNVSHEVRTPLTLILAPLDRLIISLRESPYA 418

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDK 98
             + LI+ ++   +  +  +       G  +                             
Sbjct: 419 SDLGLIQKNANRLLRVINQILDFRKVEGKQEKLAVREIDLVPFVGEIKSYFDSMASVRAI 478

Query: 99  RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
               + + ++  L  +     K+ +NL   A    P GG V I + + ++     +   G
Sbjct: 479 AYTFTSSIKQCTLWIDPDLLEKVFVNLLSNAFKFTPEGGSVRIELTEEEDRVFIQVIDTG 538

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +             E       I  + V    H +   +  E         +  L K
Sbjct: 539 SGIQPGNLPHLFDRFYTEDRSMGTGIGLHLVKEYIHMHGGEIRVESEPGQRTTFTVCLRK 598


>gi|94265122|ref|ZP_01288887.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|94265967|ref|ZP_01289691.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93453470|gb|EAT03883.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93454409|gb|EAT04707.1| ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 507

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 18/229 (7%), Positives = 56/229 (24%), Gaps = 19/229 (8%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54
               + +  L     L + + H+I +P+ +I      L         E      ++  + 
Sbjct: 200 QDRLVDAEKLAVVGRLTAEVAHEIRNPLTSIGGFARRLYKQLNEDTPERENAGVIVSEVD 259

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSR 113
                    L F R A            + +      +     + +V+     E   +  
Sbjct: 260 RLESILKDLLTFSREARFNLELRRVNNAVREAITTWLELCEQQEIKVREDLDPEIPRVLC 319

Query: 114 ERAKILLNLFMVAHASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
           +  ++   +  +   ++    +         +      +  + S+  +G+     +    
Sbjct: 320 DTDQVRQAVDNLICNAVAAMPQGGELRLSTAMERLYEIDYVVISVADSGHGIPEDQLGVI 379

Query: 167 IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    I     +       +  E+   +    +            
Sbjct: 380 FEAFYSTKKIGVGTGLGLSICKKIMEEHNGLIRAASVLGQGSTFKLYFP 428


>gi|307304331|ref|ZP_07584083.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
 gi|306902799|gb|EFN33392.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti BL225C]
          Length = 531

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 27/223 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            L + + H++ +P+ AI    ++L          D   + + L   S    L  +     
Sbjct: 249 FLAA-VSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLD 307

Query: 73  YTGSVDSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
            +        L                 +         R+    T    +++ +     +
Sbjct: 308 MSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQ 367

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------ 171
           IL+NL   A     RGG VT+      N    ++   G      +K   +          
Sbjct: 368 ILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGI-AADKLQMLGQPFVQIQND 426

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +    V  LA  +   +     +    V+   + 
Sbjct: 427 YTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIP 469


>gi|307130079|ref|YP_003882095.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Dickeya dadantii 3937]
 gi|306527608|gb|ADM97538.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Dickeya dadantii 3937]
          Length = 909

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 69/234 (29%), Gaps = 23/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQL 52
            +N   +     L   L + + HD+ +P+  +    E+L                ++ Q 
Sbjct: 660 TENARLDAEREQLRNSLLAALSHDLRTPLTVLFGQAEILTLNLASEGSPYAPQASQIRQH 719

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKI 109
           I  ++      L   R+             L ++       +     +  +Q+    +  
Sbjct: 720 ILSTTRLVNNLLDMARIQSDGFNLRKEWQTLEELAGSALRQLENSLANNTIQLRLPQDMT 779

Query: 110 DLSRE---RAKILLNLFMVAHAS-----LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
            +  +     ++L+NL   A                IS   S +     ++ NG      
Sbjct: 780 LVYCDASLIERVLINLLENAIKYAGEQATITVSASPISSPASGDMLEVQVRDNGPGIPDG 839

Query: 162 E---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +    F +   G+ ES+I    +       +   +  R+     DD   V    
Sbjct: 840 QEKVIFDKFARGHKESSIPGVGLGLAICRAIVEIHGGRIWATNADDGGAVFHFT 893


>gi|283850599|ref|ZP_06367886.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
 gi|283573842|gb|EFC21815.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           sp. FW1012B]
          Length = 577

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 57/232 (24%), Gaps = 38/232 (16%)

Query: 20  SRICHDIISPIGAIHNSLELLD-------------------EVGIEDEVMQLIRLSSMSA 60
           S + H+I +P+ ++     +++                   +     E + +I       
Sbjct: 345 SMVSHEIRTPLTSVLGFAVIIEKRLEQLFLPLLDRDPRRRRQAEQVMENLGIIVSEGERL 404

Query: 61  IIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--- 109
              +                    VD    +  +       ++  K+V +    E     
Sbjct: 405 KHLINDVLDLAKLEAGKMAFKQERVDPAEVVRHVMSASVGLLSSHKKVSLDTRIEGRLPE 464

Query: 110 --DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    ++L+NL   A     RG  VT   +   +  +  +   G      E+    
Sbjct: 465 VLGDRDRLIQVLVNLVSNALKFTERGS-VTCRARTEGHYIVVDVTDTGIGIPESEQHKVF 523

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              N       +      +       +   +  R+            +  L 
Sbjct: 524 EKFNQIGATLTNKPKGTGLGLAICKHIVESHGGRIFYVSKPGSGSTFTFTLP 575


>gi|182412755|ref|YP_001817821.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
 gi|177839969|gb|ACB74221.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
          Length = 760

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 64/235 (27%), Gaps = 28/235 (11%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIR 63
             +   + + LL   + HDI + +  I  S ELL+         + +  IR S+      
Sbjct: 379 LRVQRTESIGLLAGGVAHDINNVLLPIMASTELLEPMATSPETKQFLASIRSSAQHGAAL 438

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           ++ +                   L                               + +  
Sbjct: 439 VRQLLAFARGAVGQHTDVMLRPLLEDFVGFVNQTFPRSISVSLAPGEAPWAVRGDATQLK 498

Query: 117 KILLNLFMVAHASLPRGGKVTISVQD---------------SKNENIFSLKINGNLARFP 161
           ++L+NL + A  ++P GG++T+ V +                    +  +   G+    P
Sbjct: 499 QVLMNLCINARDAMPEGGRITLHVTNTLVNEVEAARLREIKPGPHVVIEVADTGSGM-SP 557

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I D    +        +    V  +   +   +  E            L 
Sbjct: 558 AVLERIFDPFFTTKEVGKGTGLGLAAVRGIVKGHNGTIAVESWPGRGTNFKIYLP 612


>gi|164688052|ref|ZP_02212080.1| hypothetical protein CLOBAR_01697 [Clostridium bartlettii DSM
           16795]
 gi|164602465|gb|EDQ95930.1| hypothetical protein CLOBAR_01697 [Clostridium bartlettii DSM
           16795]
          Length = 475

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM---------- 50
           MAK I     +  L     S + H++ +P+ +I    E L   GI  E +          
Sbjct: 233 MAKEID---KTRKLKEEFISSVSHELRTPLTSIKGWSETLGYEGISREELDLGLGIIQDE 289

Query: 51  ---------QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                    +L+  S +++      +        + D +  LG         +  +   +
Sbjct: 290 TERLITLVEELLDFSRLASDRIRLQIDTVNVVKLAKDVVNQLGVKASEKNITLLTEFNTK 349

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                +         ++L+NL   A      GG V + +        FS+  NG   +  
Sbjct: 350 EREIADIQGDKNRLKQVLINLVQNALKFTEEGGYVVVRLSQGDEYTTFSVVDNGIGIKQE 409

Query: 162 EKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +     E        I       +   +K +L+ E        ++  L+
Sbjct: 410 NLDKVLEKFFQEDYHKSGSGIGLAISNEIVKLHKGKLILESQKGEGTCITFTLK 463


>gi|161522483|ref|YP_001585412.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
 gi|160346036|gb|ABX19120.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans ATCC
           17616]
          Length = 799

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 21/230 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
               +S  L   L + + H++ +P+  I+  +E+L   G +   +Q I     SA    +
Sbjct: 417 EQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDALRVQAIDAIDRSARSLTR 476

Query: 66  FMRLAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
            +      +             +  +     V+  F        ++   E    +     
Sbjct: 477 MVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFQTAASSAGIALEFESRVATCIVSG 536

Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++L NL   A    P GG VT+SV       + ++   G               
Sbjct: 537 DAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAPEFVPHVFDMF 596

Query: 171 NVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                          +    V  +   +   ++ +    +     +  L 
Sbjct: 597 RRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 646


>gi|83945803|ref|ZP_00958146.1| sensor histidine kinase [Oceanicaulis alexandrii HTCC2633]
 gi|83850806|gb|EAP88668.1| sensor histidine kinase [Oceanicaulis alexandrii HTCC2633]
          Length = 533

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 69/240 (28%), Gaps = 30/240 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   L +++      + + H+I +P+ +I ++ E+L    +      ++++I+   
Sbjct: 294 MTNALYDRLDAIEA---FAADVAHEIKNPLTSIRSASEILPLAKDDDKRARLIEVIQHDV 350

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 +  +          A     ++D ++ L DI  +  D  A   RV V+   E+ 
Sbjct: 351 KRLDRLITDISNASRLDAELAREDLETIDLVVLLTDIASLQNDPDAPAPRVIVTAESERH 410

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN----IFSLKINGNLARFPEKFT 165
            +      +      +   ++             +          ++ +G      +   
Sbjct: 411 IVRGHENPLSRVFINLIENAVTFSPAEGGVRVRIERGAGQSQEVRIEDDGPGI-PEDNLE 469

Query: 166 QIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLSALLE 214
            I D                 +       +   +  ++      D          +  L 
Sbjct: 470 AIFDRFYTQRPKGAAFGGHSGLGLAIARQIVTAHGGQIRASNRTDDQGQVLGACFTVTLP 529


>gi|77411973|ref|ZP_00788303.1| sensor histidine kinase [Streptococcus agalactiae CJB111]
 gi|77161999|gb|EAO72980.1| sensor histidine kinase [Streptococcus agalactiae CJB111]
          Length = 551

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 72/230 (31%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-QLIRLSSMSAII 62
           ++   L    L     + + H++ +P+  I    ELL    + +E + Q        +  
Sbjct: 321 DVTDQLQMEQLQREFTANVSHELKTPLHVISGYSELLANQMVPNEEVPQFAAKIHKESER 380

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117
            +K +      +   +      +   + +    V + +Q     + I ++    +     
Sbjct: 381 LVKLVEDIINLSHLDEQEKLPQETVNLYDLTQKVLEGLQAKADKKHIQINFNGEEAILRG 440

Query: 118 -------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                  ++ NL   A       G+V +++++S +     +   G      +    F + 
Sbjct: 441 NPVLLNSLVYNLCDNALTYNHEKGQVNVTLKNSPDTITLEVSDTGLGIAEKDKKRIFERF 500

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +  +    +    V      +   +  +        ++ LL K
Sbjct: 501 YRVDKSRSKIVGGTGLGLSIVKSAXDFHNGSIKVDSHLGQGTTMTVLLHK 550


>gi|325859789|ref|ZP_08172919.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
 gi|325482715|gb|EGC85718.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Prevotella denticola CRIS 18C-A]
          Length = 896

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 58/230 (25%), Gaps = 18/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M ++I    ++  L     + I H++ +P+  I + +E +          + +       
Sbjct: 379 MRRHIEEEATTAKL--QFFTNISHELRTPLTLIADPVEYIIHDPNLSPQQRNMLQIVQRN 436

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---------------RVQVSWT 105
           +  L  +         + +      +                           ++ V   
Sbjct: 437 VAVLSRLVSEILDFRKIQNGKMRLHLSDFNLSECMRQWLDLFATSARKKHITLQLSVPSA 496

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                   +  +I  NL   A    P GG +  +     ++    +  NG      +   
Sbjct: 497 LPMRADRDKLERICYNLLSNAMKYTPEGGCIGFAASVEADKVKIMVSDNGCGIAQNDLPY 556

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   S       I    V   A  +   +  E  +      +  + 
Sbjct: 557 VFDRFYQASNAGHGTGIGLALVKAFADLHHGEVTVESKEGEGCTFTVCMP 606


>gi|317497235|ref|ZP_07955559.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895480|gb|EFV17638.1| hsp90-like protein [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 346

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 67/236 (28%), Gaps = 23/236 (9%)

Query: 1   MAKN-ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLS 56
           M K  I     +  L A L   I HD+ +P+ +I  + ++L    E   +    Q+    
Sbjct: 104 MEKEKISVLAKNEQLRADLLRAISHDLRTPLCSISGNADMLLNSGERLDDITKHQIYTDI 163

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI------------EQVIEDFIAVDKRVQVSW 104
              +   +  +      T   D  + L                 +           +   
Sbjct: 164 YDDSEWLINIVENLLSITRLNDGRLKLKFTDQLLDEVIAESLRHISRKHEEYQIVTECDE 223

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   R   ++L+NL   A    P+G  + I   +   +    ++ NG      E  
Sbjct: 224 LILAHMDVRLILQVLINLVDNAIKYTPKGSTIRICAMNENGKAKIQVEDNGPGI-CDEMK 282

Query: 165 TQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +              S  +       +   +  +L+ E    H  + S  L 
Sbjct: 283 PHIFEMFYTGKNTIADSHRSLGLGLALCRSIIEVHNGKLVLEDNTPHGCIFSFTLP 338


>gi|308050142|ref|YP_003913708.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
 gi|307632332|gb|ADN76634.1| multi-sensor hybrid histidine kinase [Ferrimonas balearica DSM
           9799]
          Length = 928

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 61/214 (28%), Gaps = 20/214 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H+I +P+  I  + EL+ +  +  +    + +   S    L  +     Y+     
Sbjct: 453 ATMSHEIRTPMNGILGTAELMADADLTPQQRHYLDVIHRSGEALLDVLNDVLDYSKIEAG 512

Query: 80  LIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKILLNLF 123
            + + +   V+E  +                     V+ +     +    +  ++LLNL 
Sbjct: 513 HLSVVEEPVVVEALVQSVLDTLASRAAQKGLSLRMAVRGTLAPAYLGDHAKLRQVLLNLV 572

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHD 180
             A     +G  V +++         +++  G      R    F                
Sbjct: 573 GNAIKFTAQGE-VRVALSADGGTLRLAVEDTGMGIELERQRSVFEPFQQSRSGEQWGGTG 631

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L       L       H  V +  L 
Sbjct: 632 LGLPISRRLCEAMGGDLSLASTPGHGSVFTLTLP 665


>gi|322417851|ref|YP_004197074.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320124238|gb|ADW11798.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 865

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 65/235 (27%), Gaps = 31/235 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLSSMS 59
            S  + A+  L   I HD  + + AI     ++           G   E+++    ++  
Sbjct: 491 QSQKMEAIGTLTGGIAHDFNNILTAIIGYSTMIQLQLAEAHPMQGKVSEILRASERAANL 550

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L + R        V     LG++E ++   I      ++  + + + +  +  +I 
Sbjct: 551 TRSLLAYSRKQVSNPVPVGVNAILGNLEVMLRHLIPEHIEFRMQLSPDGLSVLADSGQIE 610

Query: 120 LNLFM---VAHASL---------------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +      A  ++                +            +  + ++   G      
Sbjct: 611 QVIMNLAVNARDAMANGGILSIGTDQIMLDQEFVAAHGYGVPGSYALITVADTGVGMDEK 670

Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +I +    +        +    V  +  ++   +          V    L 
Sbjct: 671 TR-DRIFEPFFTTKEPGKGTGLGLAMVYGIVKQHGGFINCYSELGQGTVFRIYLP 724


>gi|229010861|ref|ZP_04168058.1| hypothetical protein bmyco0001_13160 [Bacillus mycoides DSM 2048]
 gi|228750535|gb|EEM00364.1| hypothetical protein bmyco0001_13160 [Bacillus mycoides DSM 2048]
          Length = 421

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 59/226 (26%), Gaps = 17/226 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSA 60
           N   +     L   + + I H++ +P+  +   L+ L +      ++    L+      A
Sbjct: 186 NTERDAEKFSLAGRIAAGIAHEVRNPLTTVRGYLQFLQDNVSPSNKELFKSLLIPELDRA 245

Query: 61  IIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------I 109
              +       +              L +  Q +         + + +            
Sbjct: 246 NSIITKFLAISKTREFTREPFPINTFLREYIQQLLASEVFLHNISIDYEFSTELDGLLVN 305

Query: 110 DLSRERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
               E  ++ LNLF  A  +   R   + IS     N    +   NG     P     I 
Sbjct: 306 IDRHELVQVFLNLFQNAIDARGERPLSIQISSYRLDNFVRITFTDNGTGV-PPAIQEYIF 364

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           D    +      +       +   +   L      +     +  + 
Sbjct: 365 DPFFSTKDSGTGLGLSVTKKIIQNHNGTLKMSSNQN-GTTFTISIP 409


>gi|229060800|ref|ZP_04198155.1| hypothetical protein bcere0026_28940 [Bacillus cereus AH603]
 gi|228718447|gb|EEL70079.1| hypothetical protein bcere0026_28940 [Bacillus cereus AH603]
          Length = 448

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 211 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPTEMEESLEVILRQ 267

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S               K     F      +    + +   ++    +++    +  
Sbjct: 268 SRKMSALISQLLLLARVDQEKHNTFQFECINMSELTEIVVEELSLMVQEASINITTHIEE 327

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 328 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVNMQLFRDETNIIGKVSDNGIGISEQHIV 387

Query: 164 --FTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +   T     +  +    V  +   +   +  E         +  L 
Sbjct: 388 KIWDRFYRVDAARTSSNNGNTGLGLSMVKWIIELHGGEITVESELGEGSTFTFKLP 443


>gi|254444190|ref|ZP_05057666.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198258498|gb|EDY82806.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 62/238 (26%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A     +L ++   +   + + H+I +P+  I   L LL +  ++DE  +L   ++ SA
Sbjct: 141 LAIARDQSLQAVRSKSEFLAVMSHEIRTPLNGILGMLSLLVDSKLDDEQQELADTANDSA 200

Query: 61  IIRL----------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              L                  +         +   +     E   E  + V   + +  
Sbjct: 201 EALLLILNDILDFSRLDSGKMALEEQHFNVRELAESVLTLMAENAQESDLEVICDIDLDV 260

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARF 160
                       +IL N+   A    PRG           +  +    F +  +G     
Sbjct: 261 PLSICSDVGRIRQILTNMIGNAVKFTPRGEVGLGISRYEAKPGEFMLRFEVWDSGIGI-S 319

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            E   ++                   +       L       +  +            
Sbjct: 320 KEAQMRLFKPFSQADSSTTRIYGGTGLGLAICRKLVFAMGGEIGVDSEAGLGSRFWFT 377


>gi|197303951|ref|ZP_03168983.1| hypothetical protein RUMLAC_02688 [Ruminococcus lactaris ATCC
           29176]
 gi|197296919|gb|EDY31487.1| hypothetical protein RUMLAC_02688 [Ruminococcus lactaris ATCC
           29176]
          Length = 358

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 24/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +          L A L   + HD+ +P+ +I  S        E L E    + V  +  
Sbjct: 117 REKQLAEADKEKLRANLLRAVSHDLRTPLTSIIGSADSYLENREELSETECTELVSNIRE 176

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            S     +    + +    + S D        +  +     +       D  + VS    
Sbjct: 177 DSEWLLNMVENLLTVTRINSSSADKVKKSAEVVEEVVSEAILRLQKRIPDAVIHVSMPNN 236

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            + +  +     ++L+NL   A         V + +++  +   FS++  G         
Sbjct: 237 FLMIPMDPTLIEQVLINLMENALIHSGSTEPVDLIIRELDDAISFSVRDYGRGLSEDLLP 296

Query: 165 TQIVDG----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD---HNVVLSALLEK 215
                G        +     I       +   +  ++               +  L K
Sbjct: 297 HIFEGGQVSSGSSDSHRGMGIGLSICQTIIQAHGGQITAANHTGDHTKGAEFTFTLPK 354


>gi|167622283|ref|YP_001672577.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella halifaxensis HAW-EB4]
 gi|167352305|gb|ABZ74918.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Shewanella halifaxensis HAW-EB4]
          Length = 346

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 63/217 (29%), Gaps = 21/217 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMR-----LAF 71
            L   + H+I +P+G +  + +LL     E E+ +   L    A      +         
Sbjct: 129 YLVRNLAHEIKNPLGGLRGAAQLLSRELKEPELHEFTDLIIEQADRLRNLVDRLLGPQRP 188

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS-- 129
                 +    +  + Q++   +  +  +   +     D+  +  ++   +  +   +  
Sbjct: 189 TQHSLYNIHEVIQKVVQLVNVTLPSNIELTQDYDPSIPDIEMDPDQLQQAILNIVQNAIQ 248

Query: 130 ------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
                            ++TI  +  K   + S+  +G     PE    +    V     
Sbjct: 249 ALEPKGGNIRLKTRTQHQITIGTKRHKLVLMLSIIDDGPGI-QPELMDTLFYPMVTGREQ 307

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +        A  +  R+  +    H    +  L 
Sbjct: 308 GSGLGLSIAHNFARLHGGRIDCDSTVGH-TEFTITLP 343


>gi|154147903|ref|YP_001406226.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
 gi|153803912|gb|ABS50919.1| sensor histidine kinase/response regulator [Campylobacter hominis
           ATCC BAA-381]
          Length = 1385

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/231 (11%), Positives = 59/231 (25%), Gaps = 27/231 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +    ++  + + H+I +P+  +    ELL    +++E    +     S+   L  +  
Sbjct: 400 DANKAKSIFLANMSHEIRTPLNGVIGFTELLRNTELDEEQQDYVDTIEQSSENLLTIINN 459

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSR 113
               +    + + L DI             + V                +          
Sbjct: 460 ILDVSKIESNKVELEDILFNPIQDFESAVEIYVAKATEKNIDILLYIDPTLIHHLYGDIT 519

Query: 114 ERAKILLNLFMVAHASLPRGGK------VTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  ++L+NL   A    P GG          S   ++    FS++  G      +     
Sbjct: 520 KIKEVLINLMSNAVKFTPEGGMIAVEIVRVKSDNPNEATVNFSVEDTGVGIAEDKLVNVF 579

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +              +              +L  +            L
Sbjct: 580 NAFSQADSTITRKYGGTGLGLTISSKYVAMMGGKLEVKSTLGKGTRFYFTL 630


>gi|153825247|ref|ZP_01977914.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
 gi|149741075|gb|EDM55134.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MZO-2]
          Length = 1331

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|186684847|ref|YP_001868043.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186467299|gb|ACC83100.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 738

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 19/218 (8%), Positives = 56/218 (25%), Gaps = 24/218 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + + H++ +P+ AI    +LL +         ++E +  I  S    +  +  +      
Sbjct: 367 ATMSHELRTPLNAIMGLSQLLQQEIVGSLNEKQNEYVSCIYSSGEHLLALINDILDLSKV 426

Query: 74  TG--------SVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                      +            V +       ++      ++     +  +I   L  
Sbjct: 427 EEGKEELLLSPLPVSDLCNYAIWTVRDRASEKGLKLTYKIDLQEDICIADERRIKQMLLN 486

Query: 125 VAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
           +   ++       +   V+       F++   G      + F  + +             
Sbjct: 487 LLTNAIKFTPVGNVSLVVKKVPQGITFTVSDTGIGIDPNQ-FQFLFEPFKQLDSRLNRQY 545

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +       LA  +   +            +  L 
Sbjct: 546 EGTGLGLALTRKLARLHGGDVTVTSTLGEGSQFTLFLP 583


>gi|322436038|ref|YP_004218250.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX9]
 gi|321163765|gb|ADW69470.1| integral membrane sensor signal transduction histidine kinase
           [Acidobacterium sp. MP5ACTX9]
          Length = 478

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 59/222 (26%), Gaps = 18/222 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMSAIIRLK 65
            +  L AL+   I H++ +P+  I  SL+ L     E      ++  ++  S      + 
Sbjct: 255 ENERLRALMLDSITHELGAPLAFIDRSLDSLLAQGLEPAESRALLGSVQGESNRLSRLVA 314

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK----------IDLSRER 115
                  +      +  +    + + +         +     +             S   
Sbjct: 315 QAVEMAKFDTQELRMTFVPQSMEEMINDAIQTAEDVLKGHPVQVTLAPRLPSVQADSIWV 374

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----GN 171
            ++L  L   A    P    + I+ +        S+   G      E+          GN
Sbjct: 375 GRLLTKLLQNAAKYSPDDAPIFITAEQDGRFVTCSIADRGIGIEPIEQSFIFDKFLRSGN 434

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            E       +       +   +  ++          V S  L
Sbjct: 435 REQRSSGTGLGLAICRTIVEAHGGKIEVSSQPGRGSVFSFTL 476


>gi|229196124|ref|ZP_04322875.1| hypothetical protein bcere0001_16850 [Bacillus cereus m1293]
 gi|228587358|gb|EEK45425.1| hypothetical protein bcere0001_16850 [Bacillus cereus m1293]
          Length = 273

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 69/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 31  MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHANGEECEQYVS 90

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S        + +         ++    + +++ ++E  +                
Sbjct: 91  ILKRKSYELKNQVDELLEYCQINYREIELHKSVVNMKALMEQIMIDFVPQLDDADMSFCM 150

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I +          +K  G     
Sbjct: 151 KGDKELHVEMDVALMVRLFENVISNSIMYGKDGKEIVIQISKRDMNVEIEIKNFGQCIPD 210

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     D    V + +L 
Sbjct: 211 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIAKSIAELHKGDIAVRSNDKE-TVFTIVLP 268


>gi|237728723|ref|ZP_04559204.1| two-component sensor kinase EnvZ [Citrobacter sp. 30_2]
 gi|226909345|gb|EEH95263.1| two-component sensor kinase EnvZ [Citrobacter sp. 30_2]
          Length = 450

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +   +  + +         + + N+ + A      
Sbjct: 295 PMEMADLNSVLGEVVAAESGYEREIETALLPGSIQVKMHPLSIKRAVANMVVNAARYGNG 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLARFP---EKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+  ++       F ++ +G   +       F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGMEQH--RAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 IDNHNGMLEIGTSERGGLSIRAWLP 437


>gi|253699905|ref|YP_003021094.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774755|gb|ACT17336.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 642

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 76/225 (33%), Gaps = 14/225 (6%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRL 55
           +    +   M+ +  L   I HD  + +  I     L+       +   +  E+   +  
Sbjct: 273 EEQLRHAQKMEAIGTLAGGIAHDFNNLLTVIAGYASLIQFNSQGSEVASMAAEIQGSVER 332

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
           ++      L F R        VD    +  + + +   I  D  + V ++   + +S ++
Sbjct: 333 AAEMTRGLLAFSRKQEVNLMPVDLNQLVEGLHKSLRRLITEDIELAVEFSDAPLIVSSDK 392

Query: 116 AKILLNLFM---VAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARFPEKFTQIVDGN 171
            ++   LF     A  ++P GG+++I  + S+ N  + ++   G      E   +  +  
Sbjct: 393 GQLEQVLFNLVVNARDAMPSGGRLSIRTERSQLNHALITVADTGVGM-SREVQDRAFEPF 451

Query: 172 VESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +        +       +  ++   +  +       V S  L 
Sbjct: 452 FTTKELGVGTGLGLSTCYGIIKKHNGVIELQSEPGAGTVFSIYLP 496


>gi|159896976|ref|YP_001543223.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890015|gb|ABX03095.1| integral membrane sensor hybrid histidine kinase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 713

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 71/239 (29%), Gaps = 29/239 (12%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLS 56
                  M+ +  L   + HD  + + AI     L  +   +         E+      +
Sbjct: 335 QLIRAQKMESIGRLAGGVAHDFNNLLTAISGYTTLAIDSAQQGFPVVEELTEIQHATDRA 394

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI---DLSR 113
           +M     L F R        V+    +  +E++I   +    + +               
Sbjct: 395 AMLTSQLLTFARKQQIQPKIVNINDLIMSMEKLIRRVLPESIQWRTVLNVNIDLVLADIG 454

Query: 114 ERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNLA 158
           +  ++LLNL + A  ++P+GG                 T       N  +F++   G   
Sbjct: 455 QIEQVLLNLVVNARDAMPQGGNLLVETNNVAVDANYARTHIDVPIGNYVLFAVSDTGIGM 514

Query: 159 RFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              E  ++  +    +    +   +       +  ++   +      +H   +   L +
Sbjct: 515 -TQEVQSRAFEPFFTTKSDHEGTGLGLATCYGIIKQHGGHIGLYSEVNHGTTIKIYLPR 572


>gi|39656325|gb|AAR29885.1| putative histidine kinase HHK6p [Cochliobolus heterostrophus]
          Length = 1364

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 55/242 (22%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  N      +  + +   + + H+I +PI  +    ELL ++ + +E  +       SA
Sbjct: 722 LLANEAAAKEASRMKSQFLANMSHEIRTPIAGVIGMSELLFDMDLNEEQKECAENIHRSA 781

Query: 61  I------------------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                              D    +               + +V
Sbjct: 782 NSLLTVINDILDFSKVESGRLDVEEVQFSLSVVLRDVNKMMAFAANRKGLEYQSLIQDEV 841

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLA 158
                 I       +IL N+   +      G          + +      FS+   G   
Sbjct: 842 QSDLRVIGDPGRLRQILTNVLTNSIKFTSVGTVQLSVSISHETKETVTVNFSIVDTGIGI 901

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E   ++                   +       L    K ++  +         +  
Sbjct: 902 -EEEVRKRLFQPFSQADSSTARRFGGTGLGLTISKNLVELMKGQIWLDSKLGQGTTATFW 960

Query: 213 LE 214
           + 
Sbjct: 961 IP 962


>gi|49473739|ref|YP_031781.1| two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
 gi|49239242|emb|CAF25562.1| Two-component sensor histidine kinase [Bartonella quintana str.
           Toulouse]
          Length = 594

 Score =  108 bits (270), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 79/248 (31%), Gaps = 38/248 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + +++      + + H++ +P+ ++ +++E L        +++++++I+   
Sbjct: 348 MTNALYMRIEAIE---RFAADVSHELKNPLTSLRSAVETLPLAKNEEAQEQLLEIIQHDV 404

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 +  +          A      VD    L  +   + +     + + +S      
Sbjct: 405 RRLDRLITDISDASRLDAELARETAQIVDMTRLLESLVHAVHEVYRNTQSIDISLNIVPR 464

Query: 110 D---------LSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLAR 159
                           +++ NL   A + +P    K+ I+++   +  I +++ NG    
Sbjct: 465 PYGKAYLVLGHELRLGQVISNLIENARSFIPHDNGKIYITMKSHASTLILTIEDNGPGI- 523

Query: 160 FPEKFTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDH-------N 206
             E   +I +              +  +       +   +   +  E I D         
Sbjct: 524 RSENIERIFERFYTDRPSEDTFGQNSGLGLSISRQIIEAHNGTITAENIVDPKLENSKIG 583

Query: 207 VVLSALLE 214
                +L 
Sbjct: 584 ARFIIMLP 591


>gi|320160098|ref|YP_004173322.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
 gi|319993951|dbj|BAJ62722.1| putative two-component sensor histidine kinase [Anaerolinea
           thermophila UNI-1]
          Length = 528

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 21/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           ++I        L   L + + HD+ SP+  I +SLE+L       +      ++ +   S
Sbjct: 283 QDITERKQLDALRDDLMAMVYHDLRSPLSNIISSLEMLNMLLPVSDDENLRALLSIAIRS 342

Query: 57  SMSAIIRLKFMRLAFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +      +  +   +             T     +    D    + +       VQ+   
Sbjct: 343 TGRMQRLINTLLDIYRLEAGQPITSRAMTEIAPLVYEAVDTILPVAENKGQQVDVQIEPN 402

Query: 106 GEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +++  +   ++L+NL   A       GK+T+SV        F+++ NG         
Sbjct: 403 LPPLNIDADMIRRVLINLLDNATKYTLFKGKITLSVYRKGERVEFAVRDNGPGIPPDALE 462

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +      E       +   +  L    +   +  E   +     +  L 
Sbjct: 463 VIFDKFARLQSERFPKGIGLGLAFCRLAVRSHGGEIWVESKLNEGSCFTFALP 515


>gi|315282987|ref|ZP_07871270.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
 gi|313613358|gb|EFR87219.1| sensor histidine kinase ResE [Listeria marthii FSL S4-120]
          Length = 565

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 325 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 380

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M           ++          L  +     V+     V+  +++  
Sbjct: 381 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELET 440

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +     +R  ++L+NL M A     + G         ++ ++++  + ++  NG+  
Sbjct: 441 PDLEYSFDPDRMEQVLINLIMNAIRHTGKEGYAGKVILKQTIDEAESNLVITVSDNGSGI 500

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  E            
Sbjct: 501 AEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIIT 560

Query: 213 LE 214
           L 
Sbjct: 561 LP 562


>gi|304392752|ref|ZP_07374692.1| sensor protein ChvG [Ahrensia sp. R2A130]
 gi|303295382|gb|EFL89742.1| sensor protein ChvG [Ahrensia sp. R2A130]
          Length = 638

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/253 (9%), Positives = 76/253 (30%), Gaps = 43/253 (16%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M +++   + +++      + + H++ +P+ ++ +++E L    +    + ++++I    
Sbjct: 378 MTRSLYDRMDAIES---FAADVSHELKNPLTSLRSAVETLPLAKKPEQRERLLEVIEHDV 434

Query: 58  MSAIIRLKFM-------------------------RLAFGYTGSVDSLIGLGDIEQVIED 92
                 +  +                              Y       +G      +  +
Sbjct: 435 RRLDRLISDISDASRLDAELARENAEPVDLAKLLTDFHATYAHMTGDRVGPMPDVTLDIE 494

Query: 93  FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSL 151
            IA  KR +          +    ++L NL   A + +P  G         + ++ + ++
Sbjct: 495 TIAAPKRQRNKPDWHVAGHAGRLGQVLANLVENARSFVPAEGGRVTMTLSRTGDDAVVTV 554

Query: 152 KINGNLARFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDD- 204
             NG     P+   +I +       +S        +       +   +   +    +   
Sbjct: 555 TDNGPGI-PPDNTGRIFERFYTDRPESEGFGQNSGLGLSISQQIIEAHGGEISASNVTGP 613

Query: 205 ---HNVVLSALLE 214
                   + +L 
Sbjct: 614 KGVKGARFTVVLP 626


>gi|168705275|ref|ZP_02737552.1| sensory transduction histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 551

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 65/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           +A+       S  L +   S + H++  P+ +I    E+L    +    +      I  S
Sbjct: 290 LARVNMALFESNRLKSEFLSTMSHELRDPLNSIIGFSEVLIAAENLTEKQQRYAGNIMTS 349

Query: 57  SMSAIIRLKFM---------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                  +  +         ++         +        Q+       +  V+V+    
Sbjct: 350 GQRLTALINDILELAKLEAGKMRLHPEPFNAAAACEHAAAQIRPQAEKKNIDVRVAADPH 409

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                ++     +I+ NL   A    P GG+VT+       + + ++   G      E+ 
Sbjct: 410 APATRQDAGKVHQIITNLLSNAVKFTPEGGRVTLKAATDGTDLVLTVTDTGVGIAPEEQD 469

Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +     +        +    V  LA      +            +  +
Sbjct: 470 LIFEKFRQAANPMTREQGGTGLGLSIVRELAKLLGGDVTVHSELGRGSTFTVRI 523


>gi|188990491|ref|YP_001902501.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732251|emb|CAP50443.1| two-component system sensory histidine kinase [Xanthomonas
           campestris pv. campestris]
          Length = 536

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI+ + +LL+E       +  ++Q+I        
Sbjct: 306 RAESLTLSAMGRFSASLAHEIRNPLAAINYASQLLEESPDIGDADRRLLQIIHQQCQRTN 365

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113
             ++ +        +    + L    +           ++           +   +   +
Sbjct: 366 GIVESVLGLARRERANPENLDLAAFVRRFVVEYRQTLSMETDILEASIEGASVHALIDPK 425

Query: 114 ERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              ++L  L   A      L    +V + V+  +      +   G          Q+   
Sbjct: 426 HLHQVLTALVHNALKYGRILDEPARVKLRVERRERMVAIDVIDRGPGIPET-VAAQLFRP 484

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ +L    +         LL+
Sbjct: 485 FYTTSEHGTGLGLYIAQELCRANQAQLDYVSVPGGGACFRILLQ 528


>gi|121591221|ref|ZP_01678522.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|153818352|ref|ZP_01971019.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227081520|ref|YP_002810071.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229505068|ref|ZP_04394578.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|298498565|ref|ZP_07008372.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
 gi|121546919|gb|EAX57070.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae 2740-80]
 gi|126511099|gb|EAZ73693.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae NCTC 8457]
 gi|227009408|gb|ACP05620.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae M66-2]
 gi|229357291|gb|EEO22208.1| hypothetical protein VCF_000274 [Vibrio cholerae BX 330286]
 gi|297542898|gb|EFH78948.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MAK 757]
          Length = 1331

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|108762872|ref|YP_634150.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108466752|gb|ABF91937.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 548

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 61/225 (27%), Gaps = 13/225 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVMQLIR 54
           ++       ++++      + H++ +P+GAI N++ +L                + +   
Sbjct: 317 QDELVARERLEVLGEAAGVVAHEVRNPLGAILNAVAVLRREAHLGPTGQAAVGMLEEEAI 376

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L  +R        V     +      +                 +      
Sbjct: 377 RLEDIVRDLLDVVRPLEPRPRPVQLGELVRRALGQMHGPPDAPTLRFSVDEAAETPPLEG 436

Query: 115 R----AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                   + +L   A  + P GGKV ++V+ +       ++  G      +   ++   
Sbjct: 437 DETLLQLAVTHLVRNAVQASPAGGKVRMTVEPADGGVRLVVEDEGPGIPDVD-PQRVFQP 495

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   +    V  +   ++  +               L +
Sbjct: 496 FFLTRANGRGLGLAIVRRVVLAHEGSVRASSRTRGGARFELWLPR 540


>gi|92116479|ref|YP_576208.1| histidine kinase [Nitrobacter hamburgensis X14]
 gi|91799373|gb|ABE61748.1| histidine kinase [Nitrobacter hamburgensis X14]
          Length = 635

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 62/217 (28%), Gaps = 21/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------------EVGIEDEVMQLIRLSSMSAIIRLK 65
           L + I H++  P+G+I  + E  +               I  ++ +  + +S        
Sbjct: 411 LTTSIAHELNQPLGSILTNTETAEIMLKSSSPNLDEMKEILADIRRDDQRASEVIRRLRS 470

Query: 66  FMRLAFGYTGSVDSL----IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
            ++        +D        +G I  V        K    S     +       ++ LN
Sbjct: 471 VLKKTPFEMTYIDLNETVRQVIGFIATVSRGRDIALKYSTCSADLNVMGDVVHLQQVFLN 530

Query: 122 LFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           L + A  ++     R  +V+++   S       +   G      +    + D        
Sbjct: 531 LIINAMDAISEAEAREREVSVTTNRSGASAEIRISDTGPGIAITDLKY-VFDPFFTRKPQ 589

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +   +  ++          + +  L 
Sbjct: 590 GMGMGLAIVRSIVEAHHGQISAANQASGGALFTIRLP 626


>gi|320186029|gb|EFW60774.1| phosphate regulon sensor protein [Shigella flexneri CDC 796-83]
          Length = 431

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|313672223|ref|YP_004050334.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938979|gb|ADR18171.1| integral membrane sensor signal transduction histidine kinase
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 466

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 76/228 (33%), Gaps = 16/228 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLS 56
           + K +   +S +  V  L S I H+I +P+  I+ ++    + L E   +  ++ ++++ 
Sbjct: 239 LEKQLE-EMSHLYKVGQLSSAIAHEIKNPLNFINLAINQVKDELKEKNYDPNLINMLKMV 297

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GEKI 109
                     +     Y   +        I ++++    +                 E+I
Sbjct: 298 EDEVKRISDLLVNFLEYGKPIKLEWQRCSIREIMDSLYKIVNLKMQDSDIKLLFDIPEEI 357

Query: 110 DLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             + +R K++ +L      +  S+ + G++ +      N     +  NG          +
Sbjct: 358 IFNCDREKLMGSLLNLLINSVESIGKKGEIKVRAYREGNSVFIEVLDNGKGIPDS-IKER 416

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +  V +      +   +   +  E+  ++  +            L 
Sbjct: 417 IFEPYVSTKATGMGLGLAFTRRIIEEHGGKIYLDDKYKDGAKFVIELP 464


>gi|307319436|ref|ZP_07598863.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
 gi|306894808|gb|EFN25567.1| PAS/PAC sensor signal transduction histidine kinase [Sinorhizobium
           meliloti AK83]
          Length = 531

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 27/223 (12%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            L + + H++ +P+ AI    ++L          D   + + L   S    L  +     
Sbjct: 249 FLAA-VSHELRTPLNAILGFSDVLAGEYFGKLENDRQREYVSLIHQSGTHLLSVVNTMLD 307

Query: 73  YTGSVDSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
            +        L                 +         R+    T    +++ +     +
Sbjct: 308 MSKIEAGRYELLLEPFRVAEAIAACEAMLSHQAREKGVRLTSRVTRSVGEINADQRAFQQ 367

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------ 171
           IL+NL   A     RGG VT+      N    ++   G      +K   +          
Sbjct: 368 ILINLIGNAIKFTDRGGLVTVDAALEGNMLKLTVSDTGIGI-AADKLQMLGQPFVQIQND 426

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +    V  LA  +   +     +    V+   + 
Sbjct: 427 YTRRYEGTGLGLSLVKGLAELHGGDVSIRSAEGEGTVIVVTIP 469


>gi|291521249|emb|CBK79542.1| Signal transduction histidine kinase [Coprococcus catus GD/7]
          Length = 446

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 72/234 (30%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +     L +  +     + + H++ +P+ AI    EL++   + ++ +         + 
Sbjct: 212 RRQHEDILKNASMRQDFTANVSHELKTPLAAISGYSELIENGMVSEKDIARFGGEIHKSA 271

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------------WTGE 107
            RL  +         +D+      +E V     A +    +                + +
Sbjct: 272 DRLLTLINDTIRLSELDATTQDVVLETVDLYQAAENCMDTLEMSAKKHDVTLKLEGESCK 331

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A     +GG VTISV    N+ + S+K  G      E   +I
Sbjct: 332 IRTEKGMADEVIYNLCDNAIRYNNKGGSVTISVMPVDNQIVLSVKDTGIGI-SKEHQERI 390

Query: 168 VDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +           +     +    V  +   N  R+           +    +K
Sbjct: 391 FERFYRVDKSRSKSTGGTGLGLAIVKHIVARNGARMELTSEVGKGTEIRIYFDK 444


>gi|289622415|emb|CBI51037.1| putative histidine kinase group protein [Sordaria macrospora]
          Length = 1333

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 58/242 (23%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +  N      +  L +   + + H+I +PI  +    ELL +VG++ E  +L      SA
Sbjct: 713 LLANEAAAKEASRLKSQFLANMSHEIRTPITGVIGMAELLLDVGLDAEQRELTENIFRSA 772

Query: 61  IIRLKFMRLAFGYTG------------------SVDSLIGLGDIEQVIEDFIAVDKRVQV 102
              L  +     ++                     +    L    +        +    +
Sbjct: 773 NALLTVINDILDFSKIESGRLDIEEVQFSLAVVIQEVSKMLSFTAERKGLTFNYEICSDI 832

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLA 158
           +     +       ++L NL          G        + +        F ++  G   
Sbjct: 833 ALDLVVMGDPGRLRQVLCNLAQNGIKFCHEGHVKLNVFVEQETNDTIEVKFVIQDTGIGI 892

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E    +                   +       L      R+            +  
Sbjct: 893 -EEEVLKGLFQPFSQGDASTARKFGGTGLGLTISKNLLELMNGRMALASKRGEGTTATFW 951

Query: 213 LE 214
           + 
Sbjct: 952 IP 953


>gi|229159499|ref|ZP_04287515.1| hypothetical protein bcere0009_3050 [Bacillus cereus R309803]
 gi|228623956|gb|EEK80766.1| hypothetical protein bcere0009_3050 [Bacillus cereus R309803]
          Length = 422

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 62/217 (28%), Gaps = 13/217 (5%)

Query: 10  SSMDLV--ALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            + +L     + + I H+I +P+ A+    ++  +    +     ++          +  
Sbjct: 205 EAENLAVIGTMSTTIAHEIRNPLTALKGFTQMQKERNPADTMSYDIMLQEIERINGFVSE 264

Query: 67  MR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
           +                    L  +  +E     +                   ++  ++
Sbjct: 265 LMLLGKPKPTNYEWCNIREILLYVVQLMESYATQYRVKFHLQVEGNLPAINGDDKQLKQV 324

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           LLN+      S+P GG + I V          S++  G      EK  +I      +  +
Sbjct: 325 LLNIMKNGIESMPEGGDIHIRVYQKAKGYLCISVEDQGFGI-AKEKLEKIGKAFYTTKEN 383

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       +  E++  +  +        +   L 
Sbjct: 384 GTGLGLMITYKIIKEHQGSIAIQSSMGVGTKVEISLP 420


>gi|224535490|ref|ZP_03676029.1| hypothetical protein BACCELL_00353 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522883|gb|EEF91988.1| hypothetical protein BACCELL_00353 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 754

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 18/230 (7%), Positives = 61/230 (26%), Gaps = 18/230 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSA 60
           +         +L     + + H+I +P+ AI     +L  D+    +E ++ I   + ++
Sbjct: 517 EEARLLAEKAELKQSFLANMSHEIRTPLNAIVGFSNILALDDGVSPEERLEYIGSINKNS 576

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            +                               +  I    +  I+            ++
Sbjct: 577 DLLLKLINDILELSRIESGYMSFEYEKCFVSELVDSIYMTHQMLISEQLEFIKELDAVQV 636

Query: 110 DLSRER---AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           ++  ++    +++ N    A         K+        +     ++  G      E+  
Sbjct: 637 EVMVDKGRLTQVITNFLNNASKFTKTGYIKLGYRYLSESDRVAIYVEDTGRGIELSEQKM 696

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +        +      ++  + + ++            + +L 
Sbjct: 697 IFSRFYKQDEFSQGAGLGLSICQVIVEKLRGKIELWSEPGKGSRFTVVLP 746


>gi|254486810|ref|ZP_05100015.1| two-component sensor [Roseobacter sp. GAI101]
 gi|214043679|gb|EEB84317.1| two-component sensor [Roseobacter sp. GAI101]
          Length = 350

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 60/240 (25%), Gaps = 29/240 (12%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSM 58
           +I     +  +     + + H++ +P+ A+   +E L     +D       + ++   + 
Sbjct: 104 DITQVTKASQMRRDFVANVSHELRTPLTALMGFIETLRGPARDDAAARDRFLGIMTGEAE 163

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTG 106
                +  +              T  VD    L    + +           V        
Sbjct: 164 RMNRLVGDLLSLSRVESDERVRPTDKVDLRYVLQSTLRNLNPLAVEADVTLVPRIGEEPL 223

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFSLKINGNLAR 159
             I  + +  ++  NL   A      G  V                    ++  +G    
Sbjct: 224 PLIGDTDQLMQVFTNLIENAIKYGGSGKPVDLDVETTLRDPSLRGPAVRITVTDHGPGID 283

Query: 160 FPEKF---TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +    +      +    +    V  + + ++ RL            + +L 
Sbjct: 284 PLHLPRLTERFYRADDHRSRALGGTGLGLAIVKHILNRHRGRLKITSTLGQGAQFTVILP 343


>gi|220908214|ref|YP_002483525.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
 gi|219864825|gb|ACL45164.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
           PCC 7425]
          Length = 769

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 63/232 (27%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+++  + + +   A + S   HD+  P+  + N ++LL+               + + 
Sbjct: 519 LAQDLERSNAELKKFAYVAS---HDLQEPLNQVANYVQLLEMRYDSALDEDAKEFINFAV 575

Query: 61  II--RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----------DKRVQVSWTGE 107
                ++ +         VD       + ++ +                   V      +
Sbjct: 576 DGVGLMQTLIDDVLAYSKVDLKGIECQLTKMEDALTQAIANLRGRISETQANVTYDPMPQ 635

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFP--EK 163
            +    +  ++  NL   A           I +  + ++    F +  NG        ++
Sbjct: 636 LVADGTQLMQLFQNLIGNAIKFRRPDQPPQIHISVERTEECWKFGVHDNGIGIDPQFSDR 695

Query: 164 FTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I              +       +   ++ ++  E            L 
Sbjct: 696 IFVIFQRLHTRDEYPGSGMGLAICKKIVECHRGQIWVESELGQGATFYFTLP 747


>gi|220921256|ref|YP_002496557.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium nodulans ORS 2060]
 gi|219945862|gb|ACL56254.1| response regulator receiver sensor signal transduction histidine
           kinase [Methylobacterium nodulans ORS 2060]
          Length = 584

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 68/246 (27%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDE---------VGI 45
           M  N    +   DL         +   + HD+ +P+  I    E+L +           +
Sbjct: 333 MRANRRLAMQRSDLRRANQLKTEILGTVAHDLKNPLAVILGRAEMLGDLIGTLPQPVEAM 392

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---- 101
             +V  +   +     +    +  A      +       D   +  +    +  +     
Sbjct: 393 RAQVGHIRDSARRLTGMIESLIADAMNDALDITLRREPVDFAALAREVSQANAPLAETKD 452

Query: 102 ------VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                 +  +           + + NL   A    P G ++ ++V     + +++++  G
Sbjct: 453 QRLRSAIPESLFICGDGERLREAMDNLISNAIKYSPVGAEIVVTVGREGEDIVYAVRDFG 512

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVV 208
                PE   ++                S  +    V  +A  +  R   E    +    
Sbjct: 513 PGL-SPEDTARLFGRFQRLSAKPTGGEGSTGLGLSIVKRIAELHGGRATAESNAPEPGST 571

Query: 209 LSALLE 214
            +  L 
Sbjct: 572 FAIRLP 577


>gi|110833303|ref|YP_692162.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
 gi|110646414|emb|CAL15890.1| sensor histidine kinase [Alcanivorax borkumensis SK2]
          Length = 813

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 65/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           + + +    S ++      +   + + H+I +P+  I  ++++L    + DE    + + 
Sbjct: 408 LEQRVSERTSELNAALNARSEFLAVMSHEIRTPLNGIIGTVDMLKGSPLNDEQRHNLNVI 467

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-----V 100
             S                           S +    L +   + +    +        V
Sbjct: 468 EQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLLNESLTLFQHKAQIHSNALTLDV 527

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLA 158
             + +   +       +IL+NL   A      G     + +D  N     F ++ +G   
Sbjct: 528 APNVSERCLGDPVRLRQILVNLISNAVKFTDNGTITVRAQRDPANSDYLYFEVQDSGTGI 587

Query: 159 RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E+  ++ D                 +       L       +  +            
Sbjct: 588 -SEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIGVDSKPKQGSRFWFR 646

Query: 213 LE 214
           L 
Sbjct: 647 LP 648


>gi|75910069|ref|YP_324365.1| periplasmic sensor signal transduction histidine kinase [Anabaena
           variabilis ATCC 29413]
 gi|75703794|gb|ABA23470.1| Periplasmic Sensor Signal Transduction Histidine Kinase [Anabaena
           variabilis ATCC 29413]
          Length = 420

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 66/219 (30%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLE--LLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             +   H++ SP+ AI ++ +  LL    +   + + +Q I   + S  I +  +     
Sbjct: 200 FTADASHELRSPLSAIVSNAQYGLLTKSTDPETQRQRLQKIFDIAQSMSILVNDLLFLAR 259

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------------KILL 120
           Y G +          +++   I  D          K+  +                + ++
Sbjct: 260 YQGRIPIESLQTVDLKILLLQIKDDFLTHPETQHIKLLFTLPNHRISVLGDANLLRQAVI 319

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           NL   A    P GG+V + +    N     +  NG      +    F +    +      
Sbjct: 320 NLLSNACKYTPEGGQVELQLFTQSNWAALQVIDNGIGIPQNDVPYIFERFYRVDKKRSRK 379

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +  ++    + +       LL 
Sbjct: 380 TGGFGLGLAITQQIIQSHGGKINVHSVVNKGTTFQVLLP 418


>gi|16332022|ref|NP_442750.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
 gi|1001334|dbj|BAA10821.1| sensory transduction histidine kinase [Synechocystis sp. PCC 6803]
          Length = 405

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 62/244 (25%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + ++      S++        L S + H++ SP+  +   LE L E     + E+ Q + 
Sbjct: 160 LGQSFNRMADSLENVEQQRRELVSDLTHELRSPLTVVRGYLEQLAEGTIAGDPELYQRLV 219

Query: 55  LSSMSAIIRLKFMR--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
             +         ++                +D    L  ++Q   D +  D    +    
Sbjct: 220 GETRRLERLTVDLQELSKVEAGYLSIQRQPLDLYPLLAKLQQRFADQLLEDGPELILAVQ 279

Query: 107 EKID----LSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
             +           +IL+NL   A    P                 + +N    ++   G
Sbjct: 280 PPLPTVLADPDRAEQILVNLIGNAVRYTPSGAITIDAYLCTNRKDMEKENLLWVTVTDTG 339

Query: 156 NLARFPE---KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +    F +    +   +       +       L       L             
Sbjct: 340 IGIAEGDLPYVFERFWRADKSRSRYSGGTGLGLAIAKRLVELQGGSLTVTSTLGQGSEFR 399

Query: 211 ALLE 214
             L 
Sbjct: 400 FSLP 403


>gi|299542040|ref|ZP_07052359.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
 gi|298725463|gb|EFI66108.1| sensor histidine kinase [Lysinibacillus fusiformis ZC1]
          Length = 472

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 59/211 (27%), Gaps = 15/211 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S + HD+ +P+ +I    ELL++  I +              + ++ +      T  +  
Sbjct: 249 SNVSHDMKTPLASIRGYAELLNDAQITNTEQIEYAKIIEKQSLYMQNLLDDLNLTMRLRH 308

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------------SRERAKILLNLFMVAH 127
                 + +V       +  ++   T +                 +     +    M   
Sbjct: 309 QQLPLTLNEVNMVPFIREIVIETLNTPQYEQANLTFEATTENSLHQIDEHFMRRAIMNFL 368

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQFY 184
            +        +SV  S +E+  ++  NG      +    F +   G          +   
Sbjct: 369 HNALLHNAPDVSVHVSVDEHTLTISDNGKGIAPEDLEHIFERYYRGTNTDNTAGTGLGTA 428

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +   +   +           +S  LEK
Sbjct: 429 IARDIIEAHGGTVTITSEKGIGTCVSIELEK 459


>gi|257440577|ref|ZP_05616332.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
 gi|257196900|gb|EEU95184.1| sensor histidine kinase [Faecalibacterium prausnitzii A2-165]
          Length = 356

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 62/209 (29%), Gaps = 17/209 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H+  +PI +I    +LL E  +  E  +           RL  +         V+S   
Sbjct: 147 SHEFKTPIVSISGFADLLLEEQLPPEDQKEYLTIIRDESRRLADLATNILTLNRVESQTI 206

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--------------KILLNLFMVAHA 128
           L D      D       +       + +L  +                ++ LNL   A  
Sbjct: 207 LTDKACFSLDEQLRQSVLVTQQKWRQKELDFDADLVPAEYTGSEGLLKEVWLNLLDNAAK 266

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYY 185
             P GG V ++++ +K+  + S+   G           F Q   G+   T   + +    
Sbjct: 267 FSPEGGTVAVNLRKAKSALMVSVTDQGEGMSADTQAHIFEQFYQGDTSHTTQGNGLGLAM 326

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +   +   +            +  L 
Sbjct: 327 VKKVLELHGGSIQVNSAPGQGSCFTVTLP 355


>gi|229515211|ref|ZP_04404671.1| sensor histidine kinase [Vibrio cholerae TMA 21]
 gi|229347916|gb|EEO12875.1| sensor histidine kinase [Vibrio cholerae TMA 21]
          Length = 736

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 59/236 (25%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTPKQRQHLTSLYESG 402

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
           E   +I                   +    V  +A      +L +           
Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKV 577


>gi|227524258|ref|ZP_03954307.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
 gi|227088489|gb|EEI23801.1| histidine kinase [Lactobacillus hilgardii ATCC 8290]
          Length = 498

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 56/239 (23%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
           M +++           +      +   H++ +P+  I   LE +           + + L
Sbjct: 238 MTESLEKANQEIQRQEERRQEFLADAAHEMRTPLTTISGILEGIKYDVIPQEQRGKSIDL 297

Query: 53  IRLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   +   I  +                   +  +   L  + +              +Q
Sbjct: 298 MSNETQRLIRLVNENLDYEKIRSNSIRLEKRHFNATKVLSSIVEQLGSKASESKDRFEIQ 357

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--- 158
                          +I+ N+   A      G    I  +         +K  G      
Sbjct: 358 APDDLPIYADYDRFVQIVFNITNNAIQFTDSGTITLIGERGYNETI-IRIKDTGIGMTKE 416

Query: 159 ---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 E++ +              +    V  L  ++  ++            + ++ 
Sbjct: 417 QQKNIFERYYKADASRRARKYGESGLGLAIVHQLVQQHGGKISVTSKPHKGTTFTVIIP 475


>gi|332140179|ref|YP_004425917.1| phosphate regulon sensor protein PhoR [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550201|gb|AEA96919.1| phosphate regulon sensor protein PhoR [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 433

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 69/234 (29%), Gaps = 20/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
           A++I       ++     + + H++ +P+  I+  LE+L      +  +   + ++   +
Sbjct: 193 ARDITRVSQLEEMRKDFVANVSHELRTPLTVINGYLEILPVDEESDPFMHKAMKEMTSQT 252

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV----------IEDFIAVDKRVQVSWTG 106
                +    + L+     S      + +I  V          +           +    
Sbjct: 253 HRMQNLIEDLLVLSRIEASSERIYENVVNIPTVLAQVEREAQALNKEKNHKINFHIDEEL 312

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-- 164
               +  E      NL   A    P GG++ +  +   N   FS+  NG+          
Sbjct: 313 YVFGVETELRSACSNLVFNAVHYTPAGGEINVYWRRKPNGAQFSVVDNGDGIEPNHLNRL 372

Query: 165 -TQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    +           +    V  +   +  RL            S +L+K
Sbjct: 373 TERFYRVDKARSRKTGGSGLGLSIVKHVLSHHNSRLEITSTLGEGSNFSFVLDK 426


>gi|119898866|ref|YP_934079.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
 gi|119671279|emb|CAL95192.1| putative two-component hybrid sensor and regulator [Azoarcus sp.
           BH72]
          Length = 831

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 54/237 (22%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      S         + + H+I +P+  I    +LL +  +  E    ++    SA 
Sbjct: 161 AKEAAEAASRAK--GEFLANMSHEIRTPMNGILGMTDLLLDSALAPEQRDYLQTVKSSAE 218

Query: 62  IRLKFMRLAFGYTGSV----------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             L  +     ++                    +        +  +  + +   V     
Sbjct: 219 ALLTLLNDILDFSRIEAGRLSLEEIDFSISGLVAETLRTLALRAHQKGVELFFDVAPDVP 278

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFP 161
                      ++L NL   A     RG        +   D     + +++  G      
Sbjct: 279 AVLKGDPARIRQVLTNLVGNAIKFTERGEIELDVTVVDTDDRHATLLVTVRDTGIGIPAE 338

Query: 162 EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +                       +       L       L  +         S  L
Sbjct: 339 KTEAIFGAFAQADNSTTRKYGGTGLGLAICKHLVELMGGELRVQSTLGEGSRFSFSL 395


>gi|45440000|ref|NP_991539.1| osmolarity sensor protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|45434855|gb|AAS60416.1| osmolarity sensor protein [Yersinia pestis biovar Microtus str.
           91001]
          Length = 450

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 64/223 (28%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54
            +      + + L      LL + + HD+ +P+  I  + E++ +      E     +  
Sbjct: 217 TRAFNQMAAGVKLLSDDRTLLMAGVSHDLRTPLTRIRLATEMMSDDDAYLSESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +  V +                
Sbjct: 277 CNAIIEQFIDYLRTGQEMPTEPSDLNSVLGEVIAAESGYERVIETDLAEGEVLVDIHPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  +        V G+
Sbjct: 337 IKRALTNMVVNAARYGNGWIKVSSGKEL--QRAWFQVEDDGPGIKPEDLKHLLQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L         + + A + 
Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHAGSLEIGTSKRGGLRIRAYIP 437


>gi|88797996|ref|ZP_01113583.1| two component sensor kinase [Reinekea sp. MED297]
 gi|88779193|gb|EAR10381.1| two component sensor kinase [Reinekea sp. MED297]
          Length = 1120

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 67/235 (28%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK +  N ++     L  S I H++ +P+ +I    +LL++        +    +   + 
Sbjct: 663 AKELAENANAAKSRYL--SGISHELRTPLQSILGYTQLLNDQPDTTPSSRTRLNAIHRSG 720

Query: 62  IR-----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 + L       +   I      Q     I     +Q + 
Sbjct: 721 QYLADLIEGLLDVSKIEAGKLDLHLTSVAFPELVQQIADMFRMQAKAKGIEFRTDIQGTL 780

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   +   +IL+NL   A       G V ++++       F+++  G+     ++ 
Sbjct: 781 PAWVKTDEKRLRQILINLLSNAVKYTDD-GYVRLTLRYRSQVAEFTVEDTGHGI-AEDQH 838

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            ++            S I    +    V LL       +            +  L
Sbjct: 839 QRVFSPFERVENEASSRIPGTGLGLTIVKLLVEIMGGDIQLSSSIGQGSRFTVSL 893


>gi|147672446|ref|YP_001215305.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|153825845|ref|ZP_01978512.1| sensor histidine kinase [Vibrio cholerae MZO-2]
 gi|146314829|gb|ABQ19369.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|149740445|gb|EDM54568.1| sensor histidine kinase [Vibrio cholerae MZO-2]
 gi|227015418|gb|ACP11627.1| sensor histidine kinase [Vibrio cholerae O395]
          Length = 497

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 71/234 (30%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIR 54
           A     N+ +          L + + HD+ +P+GAI  S   L +  +    +   +L+ 
Sbjct: 253 AHRTLANVEAEKQLESTRTTLLASVSHDLKTPLGAIIGSATTLTDPSLHLSTETQQELLT 312

Query: 55  LSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
             +       + +                    V+    +G +   +   +   K    S
Sbjct: 313 SIAEQGERLNRSLTKLLDITRYTATALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIES 372

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                   S    ++L+NL   A    PRG ++ I+      +   ++  NG      E 
Sbjct: 373 QPMLVELDSLLIEQMLINLVENAAKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PDEA 431

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I D       +  D   +      ++   ++  +     +      +  + 
Sbjct: 432 LPRIFDRFYRVEGNHADGTGLGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|46200863|ref|ZP_00207875.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 538

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/236 (10%), Positives = 70/236 (29%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSS 57
           M + +   + +++      + + H+I +P+ ++ +++E    +++      +M ++    
Sbjct: 304 MTEALWRRMDAIEA---FAADVAHEIKNPLTSLRSAVETAARIEDPEKRARLMAIVLDDV 360

Query: 58  MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----W 104
                              ++   TG V     L  + ++     A              
Sbjct: 361 GRLDRLISDISDASRIDAEMSRAETGPVALAAMLDTLAEIYRGTCAAQGLAFAVERPEGD 420

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
           T     +     ++L NL   A +  P+GG + ++ +         ++  G      +  
Sbjct: 421 TLTIQGIESRLVQVLRNLIANAASFSPQGGLIRLAARREAARITLVVEDQGPGIPPNKL- 479

Query: 165 TQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +       +         +       +   +   +  E  D+        L 
Sbjct: 480 DAIFERFYSERPEGEKFGTHSGLGLSISRQIIEAHGGTIRAENRDEGGARFIIDLP 535


>gi|329298019|ref|ZP_08255355.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Plautia stali symbiont]
          Length = 950

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++     + +  +    +  + + H++ +P+  I  +L++L    +   V  L+   
Sbjct: 454 MEQSLQEMAHAAEQASQSKSMFLATVSHELRTPLYGIIGNLDMLQTKSLPKGVDSLVTAM 513

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +        + +                     +
Sbjct: 514 NNSSSLLLKIISDILDFSKIESEQLKIEQRPFSPREVVNHIASNYLSLVVRKRLTLYVFI 573

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + +     +    F ++  G     
Sbjct: 574 ENDVPLALDGDPLRLQQVISNLLNNAIKFT-HTGCIILHAYVKEGYLAFRVRDTGVGIPA 632

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  +            + 
Sbjct: 633 KEIT-RLFDPFFQVGSGVQRNFQGTGLGLAICEKLINMMDGDIEVDSEPGMGSQFVVRIP 691


>gi|332163059|ref|YP_004299636.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325667289|gb|ADZ43933.1| aerobic respiration control sensor protein ArcB [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 794

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 62/217 (28%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDSEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPIDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTID 177
             A     +G  V    ++S +  IF ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGEIVVRVRRESNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDSNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  + +       +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSVQGAGSCFTLTIK 504


>gi|294055699|ref|YP_003549357.1| GAF sensor signal transduction histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615032|gb|ADE55187.1| GAF sensor signal transduction histidine kinase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 563

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 65/220 (29%), Gaps = 17/220 (7%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------RLSSMS 59
            +  L  L  L + I H+I +P+  I    + LD   IE +  Q                
Sbjct: 344 RNEKLTTLGMLAAEIAHEIRNPLTVIKLLFDSLDLQFIEGDARQTDVTVIGDKLNHLEEI 403

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----EKIDLSRER 115
               L F R   G     D      D  +++   +   K                   + 
Sbjct: 404 VERVLSFGRNREGMNARYDLNRLTEDTLRLVRLKLHQQKIEIGYDPTPKGLYVEVNKGQI 463

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            +++LNL + A   +P GG++ IS  ++     F++   G          +I +  +   
Sbjct: 464 QQVMLNLILNATQVMPNGGRIHISTTENNGHANFTITDTGPGMPES-IQAEIFESFLTHR 522

Query: 176 IDSHDIQFYYVILLAHENKIRLL-PEIIDDHNVVLSALLE 214
            D   +       +   +   +   E            L 
Sbjct: 523 PDGTGLGLSISKRILRSHHGNIELVESSP-EGSTFRFWLP 561


>gi|254459383|ref|ZP_05072804.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD
           1]
 gi|207083996|gb|EDZ61287.1| Hpt sensor hybrid histidine kinase [Campylobacterales bacterium GD
           1]
          Length = 958

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 58/238 (24%), Gaps = 29/238 (12%)

Query: 5   ICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +     S +L      +  S + H+I +P+ AI     LL    + ++    +  +  + 
Sbjct: 454 LAKAKESAELANKSKNIFISNMSHEIRTPMNAILGFSRLLSHTKLNNQQKTYLSRAKKAT 513

Query: 61  IIRLKFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              L  +                         + + I         E  + ++  +    
Sbjct: 514 KSLLSLLEDTLDLSKIEAGKLTIENIPFQPKVIVTEITELLELNAKEKGLLIEYEIDEHL 573

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARF 160
               +       ++L+NL   A                S         F +   G   + 
Sbjct: 574 PKYLLGDPNRIKQVLINLINNAIKFTQDGSIYVSVFVNSKNIHNCCVEFVVSDTGIGIKK 633

Query: 161 P---EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               + F      +  +    D   +       L      ++  +         S  L
Sbjct: 634 ENLADIFEHFTQVDNSTTKKEDGTGLGLAISKELVKRMGGQIDVQSEYREGSTFSFEL 691


>gi|307152913|ref|YP_003888297.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306983141|gb|ADN15022.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1613

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 56/232 (24%), Gaps = 27/232 (11%)

Query: 11   SMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFM 67
            +    +   + + H+I +P+ A+    +LL +        E ++ I  S  + +  +  +
Sbjct: 1116 ANKAKSEFLANMSHEIRTPMNAVLGFSDLLQDIITEPEAKEYLEAISASGKTLLRLINDI 1175

Query: 68   RLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRE 114
                         +   ++  I + +IEQ+               +              
Sbjct: 1176 LDLSKIEAGKLTLHYEPINLRILIAEIEQIFRHQATEKGLNLKSEIDPKLPCGVELDEVR 1235

Query: 115  RAKILLNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
              +ILLN+   A                       K +   S++  G       +     
Sbjct: 1236 LRQILLNVVGNAFKFTDTGQIKITVNCRANPEHSEKIDLKISVEDTGIGISPDNQTKIFN 1295

Query: 169  DGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                             +       L       +  +         +    K
Sbjct: 1296 AFTQSEGQSNRKYGGTGLGLAITQRLVQMMGGTVHLQSQQGQGSKFTFYFPK 1347


>gi|254429445|ref|ZP_05043152.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196195614|gb|EDX90573.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 782

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 63/256 (24%), Gaps = 45/256 (17%)

Query: 3   KNICFNLSSM--------------DLVALLCSR------ICHDIISPIGAIHNSLELLDE 42
           K+    +                 +L A L +R      + H+I +P+  I  ++++L  
Sbjct: 368 KSENARIQREANEVLEQRVTERTGELNAALSARSEFLAVMSHEIRTPLNGIIGTVDMLKG 427

Query: 43  VGIEDEVMQLIRLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIE 91
             ++DE    + +   S                           S +    + +   + +
Sbjct: 428 TPLDDEQRHNLNVIEQSGNSLLNLINDILDYSRIEAGKMPIEQTSFNLFNLINESLALFQ 487

Query: 92  DFIAVDKR-----VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN- 145
               V        +        +       +IL+NL   A      G       +D  N 
Sbjct: 488 HKAHVHSNTLTLEIAPHVGERCLGDPVRLRQILVNLISNAVKFTDNGTITVRVQRDPDNA 547

Query: 146 -ENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLL 198
               F +  +G      E+  ++ D                 +       L       + 
Sbjct: 548 DYAFFEVHDSGIGI-SEEQQRRLFDHFQQGDSSTSRRYGGTGLGLAICRQLVEIMGGEIG 606

Query: 199 PEIIDDHNVVLSALLE 214
            +            L 
Sbjct: 607 VDSQPKQGSRFWFRLP 622


>gi|188996682|ref|YP_001930933.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931749|gb|ACD66379.1| histidine kinase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 337

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 65/217 (29%), Gaps = 19/217 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             S + H++ +PI  + +++E ++E   +  +++ + ++          +          
Sbjct: 120 FVSNVSHELKTPISVLKSAMETIEEEIKDSNILKFVDMAKKRINQMDSLINDLLILARLE 179

Query: 78  DSLIGLGDIEQVIE----------DFIAVDKRVQVSWTGEKIDLSRERAK----ILLNLF 123
                +   + ++             +  DK +++     K        +     L NL 
Sbjct: 180 SQEDLVNKKKYLLYKQVEDIFEDLQHLTKDKNIKLKNNVPKDFEVYADEQKLSIALKNLI 239

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN--VESTIDS 178
             A     + G V ++ +     +I S+   G           F +    +      I  
Sbjct: 240 ENAIKYNVQNGTVEVNAKTDGKYDIISVIDTGIGIPPESIPLVFERFYRVDKSRSRNIGG 299

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    V  +   +K ++  E            + K
Sbjct: 300 TGLGLSIVKHITEAHKGKVWVESQVGKGSKFYIKIPK 336


>gi|82502199|gb|ABB80127.1| SubS [Bacillus subtilis]
          Length = 347

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 77/235 (32%), Gaps = 24/235 (10%)

Query: 5   ICFNLSSMDLVA---LLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
               + +    A    L S I HDI +P+ +I   ++ L +         ++ +  L + 
Sbjct: 104 EKVQIDAAKSEAARKRLLSNISHDIRTPLTSIIGYVDALKDGVASSEEEKQEYLNILSKK 163

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGE 107
           S+    +  +   +A      V       D+           + +    D  + V    +
Sbjct: 164 SNSLKQLIDEIFNMAKLDANEVQLKTEFFDLAEVARETLIDFLPELKKHDIDLNVQIPEK 223

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
           K  +  +R    +++ N+          G  + I + +S++E    +   G      +  
Sbjct: 224 KCSVIADRLSLIRVIENIVRNGIHYGKEGKVLGIELTESEHEYQLLIWDQGPGIPENDIE 283

Query: 164 --FTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F ++   +   ++D    +       L  +N+ R+  + +          L K
Sbjct: 284 NVFDRMYRRDRSRSLDDGSGLGLAIAKSLVEKNRGRIWAQSVPWEKTTFGFSLPK 338


>gi|55377812|ref|YP_135662.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
 gi|55230537|gb|AAV45956.1| HTR-like protein [Haloarcula marismortui ATCC 43049]
          Length = 663

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 65/221 (29%), Gaps = 17/221 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLI 53
             +      +  L     S + HD+ +P+      +ELL         +       ++ +
Sbjct: 424 RSSHELERQNERL-DEFASTLSHDLRNPLTVARGHVELLATRLSDPGTDSADLQSHIEKL 482

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV---IEDFIAVDKRVQVSWTGEKID 110
             +       +  +        SV+    +     +    ++       ++V+ +     
Sbjct: 483 EAAHDRIESIIDDVLTLTRKGASVEETAPVPLEAVITDAWDNIDNKSASIEVAGSRTIDA 542

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 + L NLF  A   +     VT+ + D      F +  +G      +    I + 
Sbjct: 543 DRTRLLRALENLFRNAIDHVGPEVTVTVGLTDHG----FYVADDGPGI-PTDAVDNIFEY 597

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              ++ D   +    V  +A  +  RL  +       +   
Sbjct: 598 GHTTSEDGTGLGLSIVKTIAEAHGWRLYVDTTYPDGAMFVF 638


>gi|30263159|ref|NP_845536.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47528520|ref|YP_019869.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186005|ref|YP_029257.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|167631858|ref|ZP_02390185.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|167637275|ref|ZP_02395555.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|170684719|ref|ZP_02875944.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|170705033|ref|ZP_02895498.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|177650165|ref|ZP_02933166.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|229601450|ref|YP_002867426.1| sensor histidine kinase [Bacillus anthracis str. A0248]
 gi|30257793|gb|AAP27022.1| sensor histidine kinase [Bacillus anthracis str. Ames]
 gi|47503668|gb|AAT32344.1| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49179932|gb|AAT55308.1| sensor histidine kinase [Bacillus anthracis str. Sterne]
 gi|167514782|gb|EDR90148.1| sensor histidine kinase [Bacillus anthracis str. A0193]
 gi|167532156|gb|EDR94792.1| sensor histidine kinase [Bacillus anthracis str. A0442]
 gi|170129888|gb|EDS98750.1| sensor histidine kinase [Bacillus anthracis str. A0389]
 gi|170670979|gb|EDT21717.1| sensor histidine kinase [Bacillus anthracis str. A0465]
 gi|172084117|gb|EDT69176.1| sensor histidine kinase [Bacillus anthracis str. A0174]
 gi|229265858|gb|ACQ47495.1| sensor histidine kinase [Bacillus anthracis str. A0248]
          Length = 457

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 220 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 276

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    ++D    +  
Sbjct: 277 SRKMSALISQLLLLARADQGNDNTFQFECINMSELTEIVVEELSLMVQEASIDITTHIEE 336

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 337 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVHMQLFRDETNIIGKVSDNGIGISEQHIT 396

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 397 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESGLGEGSTFTFKLP 452


>gi|83309372|ref|YP_419636.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82944213|dbj|BAE49077.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 537

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 71/236 (30%), Gaps = 26/236 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL---LDEVGIEDEVMQLIRLSS 57
           M + +   + +++      + + H+I +P+ ++ +++E    +++      +M ++    
Sbjct: 303 MTEALWRRMDAIEA---FAADVAHEIKNPLTSLRSAVETAARIEDPDKRARLMSIVLDDV 359

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
                 +  +  A      +            + D +A   R      G + ++ R    
Sbjct: 360 GRLDRLISDISDASHIDAEMSRAETGPVALAAMLDTLAEIYRGTCEDRGLRFEVERPEGD 419

Query: 114 ---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++L NL   A +  P GG + ++           ++  G      +  
Sbjct: 420 ALTVQGIESRLVQVLRNLIANAASFSPDGGLIRLAAHRDGGRIALVVEDQGPGIPANKL- 478

Query: 165 TQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I +       +         +       +   +   +  E  D+     +  + 
Sbjct: 479 DAIFERFYSERPEGEKFGTHSGLGLSISRQIVEAHGGAIRAENRDEGGARFTVDIP 534


>gi|332142589|ref|YP_004428327.1| nitrogen regulation protein NR(II) [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552611|gb|AEA99329.1| nitrogen regulation protein NR(II) [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 361

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 66/239 (27%), Gaps = 30/239 (12%)

Query: 4   NICFNLSSMDL-------VALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           +    +S  +L          L   + H+I +P+G I  + +LL++       E  ++I 
Sbjct: 115 DQQKRISRENLQNAQHYAARELVRGLAHEIKNPLGGIRGAAQLLEKELSEEHKEFTRMII 174

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-- 112
             S      +  +          +S +     +         D  + +    +       
Sbjct: 175 EQSDRLRNLVDRLLGPNSLPRFEESNVHQALEKIRSLMRFDSDNPITIVRDYDPSIPPLL 234

Query: 113 ---RERAKILLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKING 155
                  + +LN+   +  +                   ++TI  +         +  NG
Sbjct: 235 LDPDMIQQAVLNIVRNSVQALNESQTPHPEIRLVTRIERQMTIQTKRYALVAKIKIIDNG 294

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                PE    +    V S  +   +       L + +  ++  +    H       L 
Sbjct: 295 PGI-PPEIKDTLFYPMVTSKQNGSGLGLSISQTLINHHGGKIDVDSYPGH-TEFVIYLP 351


>gi|115360386|ref|YP_777523.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria AMMD]
 gi|115285714|gb|ABI91189.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia ambifaria
           AMMD]
          Length = 768

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 61/225 (27%), Gaps = 21/225 (9%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           S  L   L + + H++ +P+  I+  +E+L     +    Q I     SA    + +   
Sbjct: 391 SNRLKDELLATVSHELRTPLNVIYGWIEVLRNTRDDALEQQAIDAIDRSARSLTRMVGDI 450

Query: 71  -----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRER 115
                            VD +    D     +   +    V      +        +   
Sbjct: 451 LDASSLATGKLRIDPMPVDVVRLFSDTVGAFQTAASSAGIVLEFECAASACVVSGDAERL 510

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            ++L NL   A    P GG VT+++       +  +   G                    
Sbjct: 511 RQMLANLVSNALKFTPGGGAVTVTLSRDDAHAVLVVADTGQGIPPAFIPHVFDMFRRADD 570

Query: 176 ID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                     +    V  +A  +  ++  E    +     +  L 
Sbjct: 571 SPASPRRGLGLGLSIVRHIAGLHGGQVRVESAGRNRGATFTVTLP 615


>gi|313895720|ref|ZP_07829276.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975846|gb|EFR41305.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 434

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 61/220 (27%), Gaps = 23/220 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAIIRLKFM 67
              +   H++ +P+  +  S +LL                     ++  +      L   
Sbjct: 210 QFAADASHELRTPLAVVLASADLLRSDTSITSPFLKQVIEDVRDEVKKMTKLVGDLLTVA 269

Query: 68  RLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVSWTGE--KIDLSRERAKILL 120
           R          S + +       +  +       D  ++     +       ++  +++L
Sbjct: 270 RTDGKANQLKISHMDIVSAARQTVRIMHPFAEKKDIVIEEVLPKKLEIYADEQKIRQLIL 329

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
            L   A       GK+ +S+   K E   ++  NG     PE   +I D           
Sbjct: 330 ILVDNAVKYTQEHGKIKVSLMAEKGEIHLTVADNGIGI-EPEHRERIFDRFYRVDKARSR 388

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  + +       +   +   +  E   +        L+
Sbjct: 389 RMGGNGLGLAIARGIVEAHHGEISLESAVNEGTTFHVRLK 428


>gi|257870290|ref|ZP_05649943.1| histidine kinase [Enterococcus gallinarum EG2]
 gi|257804454|gb|EEV33276.1| histidine kinase [Enterococcus gallinarum EG2]
          Length = 580

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 18/225 (8%), Positives = 57/225 (25%), Gaps = 20/225 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +       + H++ +P+ ++    E L     ++       +++I+  +      +
Sbjct: 346 QLEKMQKDFVGNVSHELKTPVTSLIGFTETLLDGALEDRETLVSFLKIIQKDAYRLENLI 405

Query: 65  K-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +                  ++    +  I +  E      +   +    E++    +R  
Sbjct: 406 QEIILLSKDSHSFDYTAQEINLRALIEQIIRSYEPIAREKQLSFIINGPEELIFISKREL 465

Query: 118 IL---LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
           +     NL   A       G + +       +   S++  G      +    F +    +
Sbjct: 466 LQPILKNLIENAVNYSKSQGTIQVDYSYRAKQLQLSVRDQGIGIDREDQVRIFERFYRVD 525

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +    V          +  +         +  L 
Sbjct: 526 KARTRNSGGTGLGLAIVKDYTKLLGGTITVDSFPGAGSTFTITLP 570


>gi|257094180|ref|YP_003167821.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046704|gb|ACV35892.1| multi-sensor hybrid histidine kinase [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1138

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 48/216 (22%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS--- 76
           SR+ H++ +P+ AI    +LL   G      Q               +            
Sbjct: 742 SRMSHELRTPLNAILGFGQLLALPGDAPLSAQQADNVQEILRAGRHLLEQVNEVLDLARI 801

Query: 77  -----------VDSLIGLGDIEQVIEDFIAVDKRVQ--VSWTGEKIDLSRERAKILLNLF 123
                      V     + +   ++                            +++LNL 
Sbjct: 802 ESGRIELSLEAVPLSSVVAECVALVRPLAEARGVSIDAAIDDSMLQADPTRLRQVILNLL 861

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDS 178
             A       G V +          F++  +G      E   ++             I+ 
Sbjct: 862 SNAIKYNREHGTVRLDNTREGERLRFAVTDSGRGI-ASEHLPRLFQPFERLESSYEGIEG 920

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       L       +  +         S  L 
Sbjct: 921 SGVGLALSKRLVEMMAGSIRVDSRIGVGSTFSFDLP 956


>gi|288942314|ref|YP_003444554.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
 gi|288897686|gb|ADC63522.1| multi-sensor hybrid histidine kinase [Allochromatium vinosum DSM
           180]
          Length = 894

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 57/235 (24%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     +     +   + + H+I +P+ A+    ELL    ++ +  +  +    S  
Sbjct: 362 ARDHAEAANRAK--SDFLATMSHEIRTPMNAVLGMAELLLATDLDAQQQRFAQTIHRSGG 419

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +         +         E      + +  R+     
Sbjct: 420 ALLDIINDILDVSKIEAGKLTLAPHDFDPRLLIEETAQTFSESASAKGLRLTVRLPRDLP 479

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161
           G     S    +IL NL   A      G            D +      ++  G+     
Sbjct: 480 GLVHGDSTRLRQILFNLIGNALKFTEHGEIRVSASLTIHADERMTLAIEVRDTGSGIAPE 539

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            +          DG+         +       LAH     +  E         + 
Sbjct: 540 FQAEIFEAFAQGDGSTTRRHGGTGLGLAISQRLAHLMDGSIRVESTPGQGSCFTL 594


>gi|229529572|ref|ZP_04418962.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
 gi|229333346|gb|EEN98832.1| hypothetical protein VCG_002667 [Vibrio cholerae 12129(1)]
          Length = 1342

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 597 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 656

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 657 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 716

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 717 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 776

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 777 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 836

Query: 209 LSA 211
              
Sbjct: 837 FEF 839


>gi|229009769|ref|ZP_04166990.1| hypothetical protein bmyco0001_2400 [Bacillus mycoides DSM 2048]
 gi|228751505|gb|EEM01310.1| hypothetical protein bmyco0001_2400 [Bacillus mycoides DSM 2048]
          Length = 281

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 61/237 (25%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K       S +    L S I HDI +P+ +I   ++ L +     E E  + + +   
Sbjct: 39  LEKGQIEARKSQEARKQLLSNISHDIRTPLTSIIGYIDALKDDVAASEVEKQEYLEILYK 98

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L +    +       + +   
Sbjct: 99  KSNDLKHLVDEIFNMAKLDADEFPLKEEELDFSEVTREVLIEFLPELSKHNIELQVLIPE 158

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            T   I       +I+ NL   A      G  V + + ++  E    +   G      + 
Sbjct: 159 STSPIIADHLSLIRIIGNLIKNAIHHGKAGKIVGVELLETNTEYELLIWDKGPGIPKHDL 218

Query: 164 FTQIVDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                           +     +       L  +N   +  + I          + K
Sbjct: 219 QNVFKRMYRSEQSRNPSYGGSGLGLSISKALVEKNGGSIWVDSIPWERTTFGFSVPK 275


>gi|229132744|ref|ZP_04261590.1| hypothetical protein bcere0014_16740 [Bacillus cereus BDRD-ST196]
 gi|229166774|ref|ZP_04294524.1| hypothetical protein bcere0007_17440 [Bacillus cereus AH621]
 gi|228616771|gb|EEK73846.1| hypothetical protein bcere0007_17440 [Bacillus cereus AH621]
 gi|228650754|gb|EEL06743.1| hypothetical protein bcere0014_16740 [Bacillus cereus BDRD-ST196]
          Length = 288

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 70/239 (29%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL      +    E  V 
Sbjct: 46  MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNQLHSNREECEQYVS 105

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI----------AVDKRV 100
            L R S          +         ++    + +++  IE  +           +   +
Sbjct: 106 ILKRKSYELKNQVDGLLEYCQINYREIELHKSVINMKAFIEQIMIDFLPQLDDADMSFCI 165

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++  N+   +      G ++ I V          +K  G     
Sbjct: 166 KGDKVLHVEMDVAVMVRLFENVISNSIMYGKDGKELLIQVSKRDMNVEIEIKNFGQCIPN 225

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     D    V + +L 
Sbjct: 226 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDITVRSNDKE-TVFTIVLP 283


>gi|229170827|ref|ZP_04298441.1| hypothetical protein bcere0007_57260 [Bacillus cereus AH621]
 gi|228612665|gb|EEK69874.1| hypothetical protein bcere0007_57260 [Bacillus cereus AH621]
          Length = 436

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 63/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILRQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S+              K     F      +    + +   ++    +++    +  
Sbjct: 256 SRKMSVLISQLLLLARVDQEKHNTFQFECINMSELTEIVVEELSLMVQEASINITTHIEE 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKANGTVNMQLFRDETNIIGKVSDNGIGISEQHIA 375

Query: 164 --FTQIVDGNVESTI---DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +    +   T     +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNNGNTGLGLSMVKWIIELHGGEITVESELGEGSTFTFKLP 431


>gi|168184126|ref|ZP_02618790.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|237794199|ref|YP_002861751.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
 gi|182672857|gb|EDT84818.1| sensor histidine kinase [Clostridium botulinum Bf]
 gi|229262729|gb|ACQ53762.1| sensor histidine kinase [Clostridium botulinum Ba4 str. 657]
          Length = 342

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K +++ +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLEQKYCLDEQIRQTILLFEYQWTKKNITLDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     D + +    V  +    +  +     +         L K
Sbjct: 287 KDRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIEISSHEGVGTDFIVKLPK 342


>gi|167769698|ref|ZP_02441751.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM
           17241]
 gi|167668059|gb|EDS12189.1| hypothetical protein ANACOL_01032 [Anaerotruncus colihominis DSM
           17241]
          Length = 469

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 23/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM----------SAIIRLKFMRL 69
           S + H++ +P+ AI    E L ++G E +   L +   +               L F R+
Sbjct: 252 SSVSHELRTPLTAIKGWAETLADMGGEVDPEMLAKGMRVITSETERLAGMVEELLDFSRI 311

Query: 70  AFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLN 121
             G    V   + +            E      KR+  +   +      +R    ++ +N
Sbjct: 312 QSGRMKLVKDRMDVIAELSEAVLMFEERARHEGKRLIYNEPDQFASFMGDRNRLRQVFVN 371

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178
           +   A     RG  VT+    S+++   S+   G   R  +      +    N       
Sbjct: 372 IIDNALKYSDRGDTVTVRASVSESQVDISVADTGIGIREEDLPKIKEKFFKANSTRR--G 429

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I       +   +   L     ++    ++  L 
Sbjct: 430 SGIGLAVADEIVSLHGGTLDITSKENVGTRVTIHLP 465


>gi|149175133|ref|ZP_01853756.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           maris DSM 8797]
 gi|148846111|gb|EDL60451.1| PAS/PAC sensor signal transduction histidine kinase [Planctomyces
           maris DSM 8797]
          Length = 664

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 72/228 (31%), Gaps = 17/228 (7%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEV----GIEDEVMQLIR 54
           ++   ++S + ++  L + + H++  P+ AI N       LL++      + D+V+Q   
Sbjct: 425 RDELAHVSRLSVMGELAAGLSHELNQPLTAIANYSTAIKALLEQGKDISELVDKVIQQSL 484

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            S          ++         +    +    Q+I   I + +    S       +   
Sbjct: 485 RSGEFVQRLRSLVKKRKQQRFLFNIHSSIRTAIQLISYQIHLKQIEIQSLAENHFIMVYA 544

Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQ 166
              +  ++L+NL   A  ++       I    +     N    S+K  G      +   +
Sbjct: 545 DQVQIEQVLVNLLKNAVEAMAHSPSPRILTISTAAVERNVIQVSIKDTGPGI-PADLEER 603

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +  D   I       L   +  +L      +   +    L 
Sbjct: 604 LFTPFTTTKKDGVGIGLSLSHSLIDASGGKLWYTPNPEGGAIFHLSLP 651


>gi|126735803|ref|ZP_01751548.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. CCS2]
 gi|126714990|gb|EBA11856.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Roseobacter sp. CCS2]
          Length = 567

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DEVMQLIRLSS 57
            S  L AL  + + + H++  P+ A+   L     LL     E        +  L+    
Sbjct: 337 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRERPEEALSSFQRIDDLLERMG 396

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKIDLSRERA 116
                   + R        VD+   +     ++          +  +   E + +  +R 
Sbjct: 397 AITRQLKSYARKGSEAFEPVDTRAAVSTALALMEPQLKTRAVNIIRTLPNEPVMIMGDRL 456

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARFPEKFTQIVDGNV 172
           ++   +  +   +L           +      +     ++ NG      E    + +   
Sbjct: 457 RLEQVIINLLRNALDATKSAANPTIEILLAAGDTVSIQIRDNGEGI---ENLDDLFEPFY 513

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    D   +       + ++   RL      D   +    L 
Sbjct: 514 TTKQPGDGVGLGLAISSGIVNDLGGRLTARNAVDGGAIFEVQLP 557


>gi|115372485|ref|ZP_01459793.1| response Regulator Receiver Signal Transduction Histidine Kinase
           [Stigmatella aurantiaca DW4/3-1]
 gi|310819048|ref|YP_003951406.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|115370447|gb|EAU69374.1| response Regulator Receiver Signal Transduction Histidine Kinase
           [Stigmatella aurantiaca DW4/3-1]
 gi|309392120|gb|ADO69579.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 454

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 65/233 (27%), Gaps = 28/233 (12%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL-----------------ELLDEVGIEDEVM 50
            +  L AL  L + + H+I +P+  I  +L                 E+ +     DE +
Sbjct: 207 QAQRLEALGRLSAGLAHEINNPLSFILANLGHLRSTLEMEPSRLQPEEVQELRDACDESL 266

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +              F RL       VD    L       ++ I    R+        + 
Sbjct: 267 EGAERIRRIIQNIKLFSRLDQAPRTQVDLHEVLEQALGEAQELIGPHTRLVREMEAVPMV 326

Query: 111 LSRER--AKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKF 164
            + E    ++   L + A  +L    K       +        +  ++ NG     PE  
Sbjct: 327 CASETGLQQVFFGLLVNAAYALKEAVKEPQLRVATRLQEDGRVVVEIQDNGQGI-APEHL 385

Query: 165 TQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +++ +    +        +       +       +  E           LL +
Sbjct: 386 SRVFEPFFTTKRVGKSSGMGLSVCYGIVTGLGGDITVESTLGQGTTFRVLLPR 438


>gi|94497082|ref|ZP_01303655.1| two-component, nitrogen fixation sensor protein fixL [Sphingomonas
           sp. SKA58]
 gi|94423454|gb|EAT08482.1| two-component, nitrogen fixation sensor protein fixL [Sphingomonas
           sp. SKA58]
          Length = 497

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 61/235 (25%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------- 50
           + +     +    L A+  + S + H++  P+ A+   LE + ++  E +          
Sbjct: 253 LKELQAELVHVSRLSAMGTMASTLAHELNQPLAAVALYLETIRDMLDERDDEPFVSLRSV 312

Query: 51  -----QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI----EDFIAVDKRVQ 101
                Q    +         F+          +    + +  Q+      +         
Sbjct: 313 MDDAAQETLRAGHIVRRLRDFVARGEVDKSLHELPQVIAEASQLALVGARERGIRSFFAV 372

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLA 158
                  +    +  ++L+NL   A  ++           +          +++  G   
Sbjct: 373 DPAATLVLVDRVQIQQVLVNLMRNAIEAMAECPVRDLKVATRLRPDGLIEVTVEDTGPGI 432

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                  Q+      +  D   +       +   +  R+  E  D         L
Sbjct: 433 ADG-IREQLFTAFNSTKADGMGLGLSICRTIIEAHGGRIWMERPDRGGTRFHFTL 486


>gi|86750960|ref|YP_487456.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573988|gb|ABD08545.1| Hpt sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
          Length = 879

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 57/224 (25%), Gaps = 27/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             + + H+I +P+ A+      L E  ++ +  + +     +    L+ +     ++   
Sbjct: 339 FVAMMSHEIRTPMNAVLGLANNLLETRLDADQRRAVVGIHDAGDNLLEILDDILDFSKLE 398

Query: 78  DSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKILLN 121
              + L  I     + +                     +        I       ++LLN
Sbjct: 399 AGRLSLELIPFSPHNIVEHSLSMIGPRAIAKGLAIGTDISDDLPRALIGDPGRIRQVLLN 458

Query: 122 LFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG-----NV 172
           L   A      G        +S   S     +++   G      +  +   D      ++
Sbjct: 459 LLSNAVKFTSSGKIVVALECLSNDGSAARIQWTVSDTGIGIDPDKIESLFSDFVQADNSI 518

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV--VLSALLE 214
                   +       L  +   R+              +  L 
Sbjct: 519 RRRFGGSGLGLAISRRLIEQMGGRINVTSTPGQGSAFRFTLTLP 562


>gi|37784395|gb|AAP43027.1| PilS [Xanthomonas campestris pv. campestris]
          Length = 611

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI+ + +LL+E       +  ++Q+I        
Sbjct: 381 RAESLTLSAMGRFSASLAHEIRNPLAAINYASQLLEESPDIGDADRRLLQIIHQQCQRTN 440

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113
             ++ +        +    + L    +           ++           +   +   +
Sbjct: 441 GIVESVLGLARRERASPENLDLAAFVRRFVVEYRQTLSMETDILEASIEGASVHALIDPK 500

Query: 114 ERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              ++L  L   A      L    +V + V+  +      +   G          Q+   
Sbjct: 501 HLHQVLTALVHNALKYGRILDEPARVKLRVERRERMVAIDVIDRGPGIPET-VAAQLFRP 559

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ +L    +         LL+
Sbjct: 560 FYTTSEHGTGLGLYIAQELCRANQAQLDYVSVPGGGACFRILLQ 603


>gi|82703807|ref|YP_413373.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
 gi|82411872|gb|ABB75981.1| multi-sensor hybrid histidine kinase [Nitrosospira multiformis ATCC
           25196]
          Length = 1118

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 62/247 (25%), Gaps = 34/247 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            KNI   L +    A           + + H+I +P+  +  ++ LL    +     +L 
Sbjct: 401 RKNIERELQNARKAAEAANRAKSEFLANMSHEIRTPMNGVLGAVGLLLNTTLTPSQRELA 460

Query: 54  RLSSMSAIIRLKFMRLAFGY-----------TGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            L+  S    L  +     +               D L  + ++  ++    A    V V
Sbjct: 461 GLARASGETLLCIINDILDFSKIEAGKLVISPVPFDLLQAVEEVAGMVAMQPARKANVNV 520

Query: 103 SWTGEKIDLSR------ERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLK 152
                               ++L+NL   A     +G  +         + +     S++
Sbjct: 521 IVRYLPNVPRYVFGDLGRIRQVLINLTNNAIKFTDKGHVLIDVEAEALSEDEVSLRISVE 580

Query: 153 INGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
            +G      +  +                    +       L       +  +       
Sbjct: 581 DSGLGIAPDKLQSIFDKFTQADASTTRRYGGTGLGLAISKQLVQLMGGTIAAKSRVGAGS 640

Query: 208 VLSALLE 214
                L 
Sbjct: 641 TFWFTLP 647


>gi|310876|gb|AAC41398.1| histidine phosphokinase/phosphatase [Acidithiobacillus
           ferrooxidans]
 gi|1094624|prf||2106288A ntrB gene
          Length = 361

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 63/218 (28%), Gaps = 20/218 (9%)

Query: 15  VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT 74
              +   + H+I +P+G +  + +LLD      E+    R+           +    G  
Sbjct: 137 AQEMLRGLAHEIKNPLGGLRGAAQLLDRELQRPELKDYTRVILHEVDRLHHLVDRLQGPR 196

Query: 75  GS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                  V+    L  + +++   +     V+  +     DL  ++ +++     +   +
Sbjct: 197 SRPVFAEVNIHQVLEHVRRLLNAELPTGIAVRFDYDPSIPDLMADQEQLVQVFLNLMRNA 256

Query: 130 -------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
                              VT+     +      +  NG     P+   +I    V S  
Sbjct: 257 QQALDRHGAILIRTRVERYVTLLHHKFRLALRVDVVDNGPGI-SPDLLPRIFLPLVTSRA 315

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +    V  L   +   +          V S  L 
Sbjct: 316 EGMGMGLAIVQGLVRGHGGVVHCHSQPGE-TVFSVSLP 352


>gi|117923646|ref|YP_864263.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117607402|gb|ABK42857.1| amino acid-binding domain sensor hybrid histidine kinase
           [Magnetococcus sp. MC-1]
          Length = 843

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 33/242 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +P+  +   L  L    ++ +  + + L S S+ 
Sbjct: 457 AKQSAERANRAK--SEFLATLSHEIRTPLNGMIGLLTALQASRLDAKQQEQVGLISRSSN 514

Query: 62  IRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           + L  +     ++                  +       + E        +++   G   
Sbjct: 515 LLLDLLNDILDFSKIEAGELVLEQIPFSPLQLVEDVCACLSERAQGKGVGLRLETHGWIP 574

Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENI--------FSLKINGNL 157
                 +    +I+LNL   A     +G  V       +            F +  +G  
Sbjct: 575 PGLKGDAVRIRQIMLNLTNNAIKFTQQGEVVLHLWGLEQQPVPLPSWVSMRFGVVDSGVG 634

Query: 158 ARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +   +I D   +             +       L       +  E  +        
Sbjct: 635 IAAKD-MGRIFDPFCQADRVLDRRYKGTGLGLSICKRLVEAMGGEIWAESQEGQGSSFRF 693

Query: 212 LL 213
            L
Sbjct: 694 TL 695


>gi|324114805|gb|EGC08773.1| osmosensitive K+ channel protein His kinase sensor
           domain-containing protein [Escherichia fergusonii B253]
          Length = 894

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHAHQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|315287127|gb|EFU46541.1| histidine kinase KdpD [Escherichia coli MS 110-3]
          Length = 894

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|310640572|ref|YP_003945330.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245522|gb|ADO55089.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 629

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 63/223 (28%), Gaps = 10/223 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           M  N       M++++ L + + H++ +P+      L+L+   E G   + + +      
Sbjct: 405 MFNNELQRSEKMEIISDLAASVAHEVRNPLQVTRGFLQLMSKQEDGKNKDYLHIALEELD 464

Query: 59  SAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            A   +                   +D    +  I   + +       + +    +    
Sbjct: 465 RASAIITDFLTFAKPEFDHTKTLTILDEFKHIEGIISPMANLQGGKISLDIPQEIKVRGN 524

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           S +  +  +N+   +  +L   G + I       E +  ++ NG          ++ +  
Sbjct: 525 SSKFKQAFINIIKNSIEALREQGHIHIWAYVDNGEAVIHIRDNGEGMDAQTLS-RLGEPY 583

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +      ++            +    
Sbjct: 584 FSNKTKGTGLGMMVTFRIIETMNGKISFTSAKGVGTEATIRFP 626


>gi|310659191|ref|YP_003936912.1| sensor protein [Clostridium sticklandii DSM 519]
 gi|308825969|emb|CBH22007.1| Sensor protein [Clostridium sticklandii]
          Length = 427

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 71/235 (30%), Gaps = 22/235 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSS 57
           ++I   +    + +   + + H++ +P+ +I+  +E L         +  + + +I + S
Sbjct: 186 EDITERIKLETIRSDFVANVTHELKTPLTSINGFVETLKSNAGINKAMRTKFLDIIEVES 245

Query: 58  MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWT 105
                 +  +          +      V+    + +   ++ + I           +   
Sbjct: 246 NRLQRLIDDILILSFIEGNKSHYSNEPVNFADTINECINLVSETIKDKNVTIDFSPIDNQ 305

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-- 163
                      +++LNL   A       G V +++ +   + +FS++ +G      +   
Sbjct: 306 IYLKSNPDLMKQLILNLIDNAIKYSKEEGFVRLTLLEDSKKVLFSVEDDGIGIPSEDIDR 365

Query: 164 -FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            F +    +      +    +    V  +       +      +          K
Sbjct: 366 IFERFYRVDKARSKKVGGTGLGLAIVKHIVLNLNGNIKVHSELNKGSKFIIEFPK 420


>gi|255527225|ref|ZP_05394108.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255509089|gb|EET85446.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 313

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 68/237 (28%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           M +           ++ + S I HD  +P+ ++   +EL+ +        + + +  +  
Sbjct: 69  MCEIENEKNKKASAMSRMISNISHDFKTPLTSLIGYIELIKQSNDLSVEELREYLDIIHS 128

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------- 104
            +         F  L+   +      I    +  VI++ I       +            
Sbjct: 129 KAYYLNTTLENFFYLSRLESNDEKLKIEEISLTDVIQEQIVFFYNDFIDLGITPDIKIPE 188

Query: 105 -TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                +       +I+ NL   +      G KV +  ++  N     +  NG      + 
Sbjct: 189 EDMYVLADRISVNRIINNLLSNSLKYGKDGDKVGVLAREDDNYVYVEVWDNGKGISDKDL 248

Query: 163 --KFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F ++       +  I    I    V  L   NK  +            +  L K
Sbjct: 249 KLVFERLYTVEDSRSAMISGTGIGLSIVKQLVKANKGTITVHSEPFKKTSFTFSLPK 305


>gi|284036807|ref|YP_003386737.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
 gi|283816100|gb|ADB37938.1| PAS/PAC sensor signal transduction histidine kinase [Spirosoma
           linguale DSM 74]
          Length = 644

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 67/234 (28%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +       +L     S   H+  +P+  I  S  LL++                  
Sbjct: 410 LERALAVERELSELKVRFVSMASHEFRTPLTTILTSTSLLEKYAEITNQQDRQLKHIERI 469

Query: 61  IIRLKFMR---------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            I +K +                    +  +VD    + +    I+D     + ++V+ +
Sbjct: 470 KIAVKHLNDILEEFLSLEKLQEGQINVHPVAVDLSQLVSETVHYIQDAFGQKQSIEVALS 529

Query: 106 GEKIDLSRE--RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE- 162
                        KIL+NL   A        ++ I      +  I S++  G      + 
Sbjct: 530 CPGSINLDPSLFRKILINLLSNAVKYSGPETEIKIQAFCDNSLLILSVQDQGIGISEDDQ 589

Query: 163 --KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +       STI    +  + V         ++      +    L+  L 
Sbjct: 590 KRLFERFFRAKNVSTIQGTGLGLHIVNRYIRLMGGQINLASELNVGTTLTVTLP 643


>gi|218894079|ref|YP_002442948.1| putative two-component sensor [Pseudomonas aeruginosa LESB58]
 gi|218774307|emb|CAW30124.1| probable two-component sensor [Pseudomonas aeruginosa LESB58]
          Length = 998

 Score =  108 bits (269), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+           +   + + H+I +P+  I    ELL E  + +   Q +R  + +  
Sbjct: 496 AKDQAEAADRAK--SRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGE 553

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSR 113
             L  +     +    ++      ++         V+       +               
Sbjct: 554 GLLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 613

Query: 114 ERA--------KILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFP 161
           +          ++L NL   A      G       +  +         S+  +G      
Sbjct: 614 DGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLVRSAGSERLRLSVADDGIGI-PE 672

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L      R+  E            +E
Sbjct: 673 EMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIE 731


>gi|260777592|ref|ZP_05886485.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605605|gb|EEX31890.1| sensor protein TorS [Vibrio coralliilyticus ATCC BAA-450]
          Length = 958

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 65/235 (27%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S      L  + + H+I +P+  +  +  LL E G+  +    + + + S  
Sbjct: 459 ARRQAEQASRAKTAFL--ATMSHEIRTPMNGVLGTARLLKETGLNSKQGHFVDVINRSGT 516

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF----------------IAVDKRVQVSWT 105
             L  +     Y+      + +  ++  + D                 I +   ++   +
Sbjct: 517 TLLAILNDVLDYSKIEAGHLEIRPVDFNLFDMVKDVQQLLDGRAKEKNIEISTLIESDVS 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEK 163
                     +++L NL   A     +G        D     + +F +   G      E+
Sbjct: 577 QFLYGDVTRISQVLTNLVGNAVKFTEQGHVDIYVTYDPGQDGQVLFEVSDTGIGISQEEQ 636

Query: 164 FTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            T            S+     +       +       L  E         S  + 
Sbjct: 637 ETLFDAFTQASGGMSSKGGTGLGLAISKRIVEAMGGFLQLESEVGQGSRFSFSVP 691


>gi|317046690|ref|YP_004114338.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
 gi|316948307|gb|ADU67782.1| multi-sensor hybrid histidine kinase [Pantoea sp. At-9b]
          Length = 777

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 53/217 (24%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLNQEQLKYLKTIHVSAITLGNIFNDVIEVDKIERR 347

Query: 80  LIGLGDI----------------EQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +                        +      ++    +         +IL NL 
Sbjct: 348 KVQLDNQPLDFTGFLADLENLSGLLAQPKGLKFVMSPELPLPHKISADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A     +G  V            F ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGEIVVRVAYHQDETLHFEVEDSGMGIPQEEQDKIFAMYYQVKDQHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +    +       +  ++
Sbjct: 468 GTGIGLAVSRRLAQAMGGDITVRSVQGQGSCFTVEIK 504


>gi|297568629|ref|YP_003689973.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924544|gb|ADH85354.1| PAS/PAC sensor hybrid histidine kinase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 817

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/235 (9%), Positives = 56/235 (23%), Gaps = 27/235 (11%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIR 63
               M+ V  L   + HD  + +  I  ++E+          +  ++     ++  +   
Sbjct: 440 QAQKMESVGRLAGGVAHDFNNMLTVIIGNIEMSMRYPAMDDAKHVMLHEALTAARRSAEI 499

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERA 116
            + +        +   ++ L D  QV    I       +    +             +  
Sbjct: 500 TRQLLAFSRKQMAAPKVLDLNDTVQVGLKMIRRLIDEDIDLAWKPGAELWPVKIDPTQID 559

Query: 117 KILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           ++LLNL   A  +               L                 +  +  +G      
Sbjct: 560 QVLLNLCANARDAIAGVGRITIATDNMTLVESDCAQHQELRPGYYVLLVVSDDGCGMDEV 619

Query: 162 EKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +     +    V  +  +N   +  +            L +
Sbjct: 620 TLSHLFEPFFTTKKVGHGTGLGLATVYGVVEQNHGLIQVDSKPGRGTTFKIYLPR 674


>gi|257093687|ref|YP_003167328.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046211|gb|ACV35399.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 671

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 76/237 (32%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNS----LELLDEV----GIEDEV 49
           +A+     L  +  LV +  + S + H++  P+ AI +     L  L+      G   E 
Sbjct: 432 LARQQQEKLQVTARLVTMGEMASTLAHELNQPLAAITSYNAGCLNKLESGNFNAGQFKEA 491

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSW 104
           +  + + +  A   ++ +      +    +   L ++       +     +   R+    
Sbjct: 492 LGKLAVQAQRAGHIIRRVHDFVRKSEPKLAPCDLAEVIDDSIGFIEGAAKSRGVRIVREI 551

Query: 105 TGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNL 157
            G + +L  ++    ++LLNL      ++         +      + N+    +   G  
Sbjct: 552 QGMRPELMADQVMLEQVLLNLMRNGIEAMSDVPADRRRLTIKLSQTDNQMEVRVVDRGPG 611

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              PE   ++      +  D   +       +   +  RL  E   +   +    L 
Sbjct: 612 I-SPEVAEKLFTPLFSTKADGMGMGLNICRSIIEFHHGRLWVEANPEGGSIFVITLP 667


>gi|254679644|gb|ACT78509.1| GacS [Pseudomonas sp. DF41]
          Length = 916

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSA 330

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++       +      V    
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ + ++    +   S++  G     
Sbjct: 391 PLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSN 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISLRL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|225181083|ref|ZP_03734530.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168280|gb|EEG77084.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 423

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 69/218 (31%), Gaps = 12/218 (5%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAII- 62
            L  ++ V+ + + I H++ +P+  I   L+LL +           ++L       A   
Sbjct: 202 KLERLETVSEIAASISHEVRNPLTTIGGFLQLLKDSKLPEEKRQTYIELCLEELDRATNI 261

Query: 63  ------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                   K              +  +  + +       V+ ++    +   +  S++  
Sbjct: 262 ITNYLSLAKPSLDNMKVLELNKEIEYVISVIEPYATLNGVEVKLSQLDSMHVLGESQKLH 321

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           + L+NL      S+ +GG + +++  S    +  +   G      E+ +++      +  
Sbjct: 322 QCLINLLKNGIESMSQGGTLEVTINKSGENALVIISDTGEGM-DEEQISKLGTLYYSTKS 380

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +    + ++  +         +    
Sbjct: 381 KGTGLGTMVAYSIIKSFRGKIGVQSEVGKGTQFTIQFP 418


>gi|172039664|ref|YP_001806165.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
 gi|171701118|gb|ACB54099.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
           51142]
          Length = 765

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 58/222 (26%), Gaps = 28/222 (12%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVM------QLIRLSSMSAIIRLKFMRLAFGYT 74
            + H++ +P+  I      L     E   +      + ++    S    L  +     Y+
Sbjct: 396 NMSHELRTPLTCIIGLSGTLLHWSQESTTLPLDKQQKYLQTIQNSGKHLLDMINEILEYS 455

Query: 75  GSVDSLIGL------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-----ERAK 117
                   L              I++V ++       +++     +   S         +
Sbjct: 456 NLQSGKYVLAVREFSLTKVAKNVIQRVSDEAEHRRINLELDLQINQQQDSFYADPERVQQ 515

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES 174
           IL +L   A    P  G VT+ +    N     ++  G   +  +    F          
Sbjct: 516 ILYHLLNNALKFTPENGSVTLRIWRENNHVSLEVEDTGIGIQEEKIPLLFESFQQLENSR 575

Query: 175 T--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       L   +   +  E I +        L 
Sbjct: 576 RRMYGGTGLGLALTKQLVELHGGTIEVESIINQGSTFIIRLP 617


>gi|86141045|ref|ZP_01059604.1| nitrogen regulation protein NtrY, putative [Leeuwenhoekiella
           blandensis MED217]
 gi|85832987|gb|EAQ51436.1| nitrogen regulation protein NtrY, putative [Leeuwenhoekiella
           blandensis MED217]
          Length = 487

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/230 (8%), Positives = 55/230 (23%), Gaps = 16/230 (6%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRL 55
           +  +      S    A   +  ++ H+I +P+  +  +++      +    D   +L   
Sbjct: 256 LENSAAKLAQSEREAAWREMAKQVAHEIKNPLTPMRLTVQSFQMRFDPNDPDIHKKLDEY 315

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           S                           +    +       +             +    
Sbjct: 316 SKTLIQQIDTMSSIAEAFSNFAKMPAQQNETLNVVFVTKLALDIFTEHYLTFGTDAEEIT 375

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFT 165
                 +  +++ NL   A  +        I V+   +       +  NG+     E   
Sbjct: 376 VKLDRTQLIRVVTNLVKNAIQATEGVQDPKIRVEIKSDVDTVCILVCDNGHGI-PEENIE 434

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           ++ +    +      +    V  +       +     +D   V      K
Sbjct: 435 KVFEPKFTTKSSGMGLGLAMVKNIVETYNGTITFTSKEDRGTVFKVTFPK 484


>gi|170736601|ref|YP_001777861.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|169818789|gb|ACA93371.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1002

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 57/243 (23%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
            + +   L + D       A L   + H+I +P+ AI  +LEL+    + D   + ++  
Sbjct: 499 ERKLDEALRAADAANDAKSAFLA-TMSHEIRTPLNAILGNLELIGREPLADTQRERLQTV 557

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRV 100
             ++ +                          D    +     + E          D  V
Sbjct: 558 EGASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPLATAKGLQYDVIV 617

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGN 156
             +     +       +I  NL   A     RG               +  +  +   G 
Sbjct: 618 DDALASRYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDADPASPVVIGVSDTGI 677

Query: 157 LARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                ++            ++        +       L       +  +           
Sbjct: 678 GMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDVKSAPGEGSTFVV 737

Query: 212 LLE 214
            L 
Sbjct: 738 TLP 740


>gi|90423287|ref|YP_531657.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
 gi|90105301|gb|ABD87338.1| multi-sensor signal transduction histidine kinase [Rhodopseudomonas
           palustris BisB18]
          Length = 612

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 58/220 (26%), Gaps = 26/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII------------RLKFM 67
           + + H++ +P+ AI    E++ +  +        +  +                      
Sbjct: 356 ATMSHELRTPLNAIIGFSEMIVQEDVLMISAARRKEYAQLINDSGQHLLSVVNGILDMSK 415

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE-------RAKILL 120
             +  +    +       +           +  +V       +   +         +I+L
Sbjct: 416 MESGKFEILPEPFAPRPALLNCCNLLALKARENEVDLVTRAPENLPQLTGDPRAFKQIVL 475

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
           NL   A     RGG VT+S           +   G      +   +I +           
Sbjct: 476 NLVSNAIKFTERGGTVTVSAAVEGARLALRVSDTGVGIGADDLK-RIGEAFFQASKSYHR 534

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +    V  L   +   +  E   D    ++ +L 
Sbjct: 535 RHEGTGLGLSIVKSLVALHGGEMSVESKLDEGTTVTVMLP 574


>gi|319653807|ref|ZP_08007902.1| hypothetical protein HMPREF1013_04521 [Bacillus sp. 2_A_57_CT2]
 gi|317394533|gb|EFV75276.1| hypothetical protein HMPREF1013_04521 [Bacillus sp. 2_A_57_CT2]
          Length = 485

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 68/238 (28%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + ++I   L   +    L + I HD+ +PI +I   +E + +      + M+    +   
Sbjct: 244 LKESIDLQLRYEENRKELLANISHDLKTPITSIIGYVEGIKDGVANTPQKMEKYLSTVHF 303

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA--- 116
               +  +         +D        E V  D    D   ++     +  +  E     
Sbjct: 304 KAKDMDSLIDELFLFSKLDLKKEPFHFETVELDKYMKDYAEELYLDLLQQGIHLELHLLN 363

Query: 117 -------------KILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLARF-- 160
                        ++L NL       + +  K        +  + I  ++ NG       
Sbjct: 364 KPIFVKVDREKLKRVLANLISNCVKYMNKDRKKISISLHDRLGDVIVKVEDNGQGIEPSA 423

Query: 161 -PEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            P  F +        + +     +       +  E++  +           +   L+K
Sbjct: 424 LPNIFERFYRAEQSRSSETGGSGLGLAIAKQIILEHRGEIWASSEMGKGTSVFFSLKK 481


>gi|289670378|ref|ZP_06491453.1| two-component system sensor protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 291

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--------------E 46
           + +         +L +   S + H+  +P+G+I +   LL++                  
Sbjct: 44  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
               +L  +      +            G  D +     +  +        K + V    
Sbjct: 104 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDTGKTMLVFDDP 163

Query: 107 EKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             + +         +IL N    A    P+G     +  +      F ++  G      E
Sbjct: 164 PVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGI-AAE 222

Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +  V+        +    +        A     R+    +         +L 
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGVNSVPGQGSEFYVVLP 280


>gi|289662747|ref|ZP_06484328.1| two-component system sensor protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 291

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--------------E 46
           + +         +L +   S + H+  +P+G+I +   LL++                  
Sbjct: 44  LDQQAEQLRDVSELKSRFLSYMSHEFRTPLGSILSITRLLEDGMDGPLNAEQLKQVRFVS 103

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
               +L  +      +            G  D +     +  +        K + V    
Sbjct: 104 GSARELTEMVDDLLDLAKIEAGRITISPGWFDLMDLFAALRGMFRPLTDTGKTMLVFDDP 163

Query: 107 EKIDLSRERA----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             + +         +IL N    A    P+G     +  +      F ++  G      E
Sbjct: 164 PVLPMLYTDDKKLAQILRNFISNALKFTPQGHVRVFAQLEGDTHVRFGVQDTGIGI-AAE 222

Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +  V+        +    +        A     R+    +         +L 
Sbjct: 223 LHEALFEDFVQVDSPLQKRLTGTGLGLSICKRFAELLGGRVGVNSVPGQGSEFYVVLP 280


>gi|320006985|gb|ADW01835.1| integral membrane sensor signal transduction histidine kinase
           [Streptomyces flavogriseus ATCC 33331]
          Length = 673

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 60/234 (25%), Gaps = 27/234 (11%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAI 61
                +   ++ S + H++ +P+  I   LE   +   + +       ++          
Sbjct: 429 RARMEEQRKVMVSDVAHELRTPLSNIRGWLEGAQDGVADADATFVSSLLEEAVQLQHIID 488

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLS-------- 112
                     G        + +GD+   V+    A      V  T    +          
Sbjct: 489 DLQDLSAADAGALRLHPEPVRIGDLLAHVVAAHQAQADAAGVDLTVTVAEEHGAVPVVEA 548

Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPE--- 162
                 + + NL   A    P GG+VT+    +       E +  +   G+     +   
Sbjct: 549 DPVRLRQAIGNLVSNAVRHTPAGGRVTLRAHATGPGGPDDEVLLEVADTGSGIAPEDLPY 608

Query: 163 KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +      +         +    V  L   +              V +  L 
Sbjct: 609 VFDRFWRAEKSRSRRTGGSGLGLAIVRKLVEAHGGTAGVVSTVGRGSVFTLRLP 662


>gi|228921865|ref|ZP_04085178.1| hypothetical protein bthur0011_28590 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837790|gb|EEM83118.1| hypothetical protein bthur0011_28590 [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 436

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 199 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQKNNPKEMEESLEVILKQ 255

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    +V+    +  
Sbjct: 256 SRKISTLISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQEASVEITTNIEK 315

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 316 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 375

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 376 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESELGEGSTFTFKLP 431


>gi|281420578|ref|ZP_06251577.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella copri DSM 18205]
 gi|281405351|gb|EFB36031.1| two-component system sensor histidine kinase/response regulator
            hybrid [Prevotella copri DSM 18205]
          Length = 1349

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 62/238 (26%), Gaps = 28/238 (11%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE-------------- 46
            + ++     + +    +    I H+I +P+  I   LE L E   +              
Sbjct: 813  LKQDQEMRDARLQFFTM----IAHEIRTPVTLIIGPLESLKEYWKQVAGKLSDGETITQT 868

Query: 47   ----DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                D   Q + L     +   K  +        ++++  L              K +++
Sbjct: 869  LSVIDRNAQRLLLLVNQLLDFNKVQQKGMQVHFRLNNISKLMHAVAERFAPTFEQKSIRL 928

Query: 103  SWTGEKIDLSRERAK-----ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                   +L     +     ++ NL   A        +++  + +  N     ++ NG  
Sbjct: 929  DVDYPADELVAMIDQEAITKVISNLMTNALKYTEDYVRLSCRLLEDGNHFRIEVEDNGLG 988

Query: 158  ARFPEKFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                EK                  I    V  L   +   +  E            L 
Sbjct: 989  ISPDEKEKIFGAFYQARDNKPGTGIGLNIVKNLVEAHHGMVEVESAVGKGSTFIVTLP 1046


>gi|222054917|ref|YP_002537279.1| histidine kinase [Geobacter sp. FRC-32]
 gi|221564206|gb|ACM20178.1| histidine kinase [Geobacter sp. FRC-32]
          Length = 248

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 11  SMDLVAL--LCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           +  +  L  L + + H++ SP+  I ++ ++ L E  + D V +++    M A     F 
Sbjct: 27  NEKMAELGKLSTGLVHELNSPLSVIVSAAQMILREEQLPDFVKEMVERIGMEAQRLSLFT 86

Query: 68  RLAFGYTG-------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----RERA 116
           R    +           D  + L ++   +      D  + +      +        +  
Sbjct: 87  RSLLSFARSDAGVDSEADVNLVLQEVMDFLRYEARKDSIMVIEEKDFDLPPIAADANKLK 146

Query: 117 KILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           ++ +NL M A  S+  GG +   +           L   G           I +    + 
Sbjct: 147 QVFINLIMNAFQSMEDGGTLLLKTYAVDGPFVAVELADTGKGIPVGAI-DHIFEPFFTTK 205

Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +  Y    +      ++  + + +     + L  
Sbjct: 206 AANEGTGLGLYITRHIIERLGGKIQVQSVVNEGTTFTLLFP 246


>gi|117622900|ref|YP_851813.1| sensor protein KdpD [Escherichia coli APEC O1]
 gi|218557621|ref|YP_002390534.1| sensor protein KdpD [Escherichia coli S88]
 gi|115512024|gb|ABJ00099.1| sensor protein KdpD [Escherichia coli APEC O1]
 gi|218364390|emb|CAR02069.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein ; sensory histidine
           kinase [Escherichia coli S88]
 gi|294489600|gb|ADE88356.1| sensor protein KdpD [Escherichia coli IHE3034]
 gi|307627880|gb|ADN72184.1| sensor protein KdpD [Escherichia coli UM146]
 gi|323952737|gb|EGB48605.1| osmosensitive K+ channel protein His kinase sensor
           domain-containing protein [Escherichia coli H252]
 gi|323958448|gb|EGB54154.1| osmosensitive K+ channel protein His kinase sensor
           domain-containing protein [Escherichia coli H263]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|330944138|gb|EGH46261.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 909

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    + D   +         
Sbjct: 497 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWALGDTHFENRNIRRALG 556

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 557 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIELNC 616

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I     ++E +F +  +G     
Sbjct: 617 TAAQGLVVDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQHEVLFRVSDDGIGIPV 676

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  +   D   V S  L 
Sbjct: 677 EHLPFIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTLP 732


>gi|325961693|ref|YP_004239599.1| signal transduction histidine kinase [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323467780|gb|ADX71465.1| signal transduction histidine kinase [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 547

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 17/223 (7%), Positives = 56/223 (25%), Gaps = 28/223 (12%)

Query: 20  SRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           + + H++ +P+ +I   L+++ E           +++ ++  ++    I ++ M      
Sbjct: 316 ATVNHELRTPLTSIMAYLDMIQERTEQPVSPEVHQMLDIVVRNTERLRILIEDMLSVSRN 375

Query: 74  TGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
                 +                 +       +  + V    E  ++  +  ++      
Sbjct: 376 GLDDSLMHLTPVRLGQTLDLVAAALRPLATLQNVTIAVEPVPEDPEILADEVQLQQVFTN 435

Query: 125 VAHASLPRGGKVTISVQDSK--------NENIFSLKINGNLARFPEKFTQIVDGNVEST- 175
           +   ++            S+             S+   G      E           S  
Sbjct: 436 LVSNAIKFTPSGGRIEVGSESHAAADGTRWATVSVADTGIGISSDEIHHVFTRFYRASNA 495

Query: 176 ----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    +       +   +  R+           ++  L 
Sbjct: 496 MAGAIPGTGLGLAITKDIVSRHGGRIDVSSTLGSGTTVTVSLP 538


>gi|322381462|ref|ZP_08055453.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154569|gb|EFX46852.1| two-component sensor histidine kinase-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 462

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 58/222 (26%), Gaps = 19/222 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
            D+     S + H+I SP+ +I    + L    +  E  +           RL  +    
Sbjct: 239 EDMRQEFVSNVSHEIQSPLSSIQGFSKTLRTENLSSEQQEHYLSIIEKESSRLSVLSKLL 298

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--------------AK 117
               S+D   G  + E            +   W   + +L  +                +
Sbjct: 299 LLLASLDKEEGTLEQECFDAAVQLKQVVMMSEWQWREKELVIQMDLPSTIVKGDPKLLYQ 358

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV-- 172
           +  NL   A A    GG +++ +          +   G           F +    +   
Sbjct: 359 VWSNLLTNAIAHTDAGGTISLKIYQDTANVHVLISDTGCGIPEKHLLYIFDRFYKTDQAR 418

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +   ++  +      +       +L 
Sbjct: 419 TRKESGTGLGLSIVKKIIDLHEGNITVNTEVNKGTAFHIVLP 460


>gi|312962808|ref|ZP_07777295.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
 gi|311282835|gb|EFQ61429.1| periplasmic sensor signal transduction histidine kinase
           [Pseudomonas fluorescens WH6]
          Length = 475

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 65/216 (30%), Gaps = 4/216 (1%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + I   L+     + L S I HD+ +PI  +   +ELL++  ++ +  + +    +  
Sbjct: 260 MRERISRYLTE---RSQLFSAISHDLRTPITRLRLRVELLEDENLQTKFGRDLDELELLV 316

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L+ ++    +       +       V                        +   +  
Sbjct: 317 KGALQCVKDTDIHENIQPVDLNHVLECLVEPYVAPNGNGRVTLDGYALAAYPGKPLALKR 376

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSH 179
            +  +   +L  G    + ++D   + I  +   G                        +
Sbjct: 377 CIGNLIDNALKYGQNAHLHIEDDGAQFILHVDDEGPGVPEQRLEQVFEPHFRLSGQQQGY 436

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +       +AH +   +  + + +  + ++  L +
Sbjct: 437 GLGLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPR 472


>gi|257093279|ref|YP_003166920.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045803|gb|ACV34991.1| integral membrane sensor signal transduction histidine kinase
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 509

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 65/231 (28%), Gaps = 19/231 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMS 59
           A++    +S+  L   + S + HD+ +P+ ++    + L   +  +++  ++   +    
Sbjct: 267 AQDSELQVSAERLRTSILSSLSHDLRTPLTSLVGLADTLVHRQPALDEGAIETAAIIRDQ 326

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV--------QVSWTGEKIDL 111
           A      M             I L    Q  E+ +    R+        ++     +   
Sbjct: 327 AHAMHHLMSNLLEMARLQAGSITLNKEWQPFEEIVGSSTRLLAGLLASRKLDIQVPRDLP 386

Query: 112 SRERA-----KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
             +       ++L NL   A    P G ++ +  +        ++  +G           
Sbjct: 387 LVDFDAVLLERVLCNLLENAAKYSPPGARIEVLARTRGEALEIAVGNDGRGFPVDRIDQV 446

Query: 167 IVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       +   +   ++ E        +   L 
Sbjct: 447 FDLFARGEREPAVAGTGLGLAICKAIVEAHGGTIVAENRPG-GACVRFTLP 496


>gi|255320056|ref|ZP_05361252.1| phosphate regulon sensor kinase PhoR [Acinetobacter radioresistens
           SK82]
 gi|262380562|ref|ZP_06073716.1| phosphate regulon sensor kinase PhoR [Acinetobacter radioresistens
           SH164]
 gi|255302924|gb|EET82145.1| phosphate regulon sensor kinase PhoR [Acinetobacter radioresistens
           SK82]
 gi|262298008|gb|EEY85923.1| phosphate regulon sensor kinase PhoR [Acinetobacter radioresistens
           SH164]
          Length = 452

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 64/229 (27%), Gaps = 21/229 (9%)

Query: 8   NLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
            + +++ +       I H++ +P+  +   +E   +    +   +       +   R+  
Sbjct: 217 RMQNLEQMRKDFVDNISHELRTPLTVLSGYIETFTDQEDLNPRWKRAFDQMQAQTKRMNS 276

Query: 67  MRLAFGYTGSVD---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +         ++                +  L D  Q           + +    + I  
Sbjct: 277 LVNDLLLLSRLENNKKIAKNQIVEMPGLMNQLFDDAQAYNVDYGHTLNLDIDSHCDLIGS 336

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIV 168
             E A    NL   A    P+GG +TI   D      F+++  G             +  
Sbjct: 337 DMELASAFSNLITNAIKYTPKGGTITIGWHDDGEHGYFTVQDTGIGIDPRHLPRLTERFY 396

Query: 169 DGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +           +    V  +  ++   L  E  ++      A+  K
Sbjct: 397 RVDSARSRQTGGTGLGLAIVKHVLMQHNAYLEIESKENEGSTFKAVFPK 445


>gi|255532766|ref|YP_003093138.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
 gi|255345750|gb|ACU05076.1| PAS sensor protein [Pedobacter heparinus DSM 2366]
          Length = 372

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 68/227 (29%), Gaps = 21/227 (9%)

Query: 9   LSSMDLV-ALLCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQLIRLSSMSA 60
           +   +L  +     + H++ +P+ A+   ++LL        +      + +L +      
Sbjct: 141 IKQNELRRSKFIGMVSHELKTPLTALKAYIQLLNKWAKQKRDSFSIGALSKLEKQVKKMT 200

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLS 112
            +   F+  +   +G +       D+  ++ + I  +K +                    
Sbjct: 201 TMINGFLNFSGAESGKIHLNKSTFDMIPLLNEVIEENKDIYPDHAISLAASQQMVVNADR 260

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  ++++NL   A      G  + ++    K   I S+K  G      +        + 
Sbjct: 261 DKIEQVIINLISNAVKYSDPGKPIAVTCLQEKTRLILSVKDTGMGIEEKDIAKLFKPHSR 320

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   I    I  Y    +   +   +  +    H       L+
Sbjct: 321 IKTSKTENISGFGIGLYLCAEIIKYHGGEIGVKSEPGHGSTFWFSLK 367


>gi|221211839|ref|ZP_03584817.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
 gi|221167924|gb|EEE00393.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD1]
          Length = 767

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 21/230 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK 65
               +S  L   L + + H++ +P+  I+  +E+L   G +   +Q I     SA    +
Sbjct: 385 EQAATSNRLKDELLATVSHELRTPLNVIYGWIEVLRNSGDDALRVQAIDAIDRSARSLTR 444

Query: 66  FMRLAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
            +      +             +  +     V+  F        ++   E    +     
Sbjct: 445 MVGDILDASSLSTGKLRLDTMPVDVVRLFADVVAAFPTAASSAGIALEFESRVATCIVSG 504

Query: 114 ---ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                 ++L NL   A    P GG VT+SV       + ++   G               
Sbjct: 505 DAERLRQMLSNLVSNALKFTPAGGDVTVSVAHDDTHAVLTVTDTGQGIAPEFVPHVFDMF 564

Query: 171 NVESTID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                          +    V  +   +   ++ +    +     +  L 
Sbjct: 565 RRADDSPASSRRGLGLGLSIVRHIVQLHGGTVVVDSAGRNRGTTFTVKLP 614


>gi|213609422|ref|ZP_03369248.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 758

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 57/229 (24%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       + +  +   + + H+I +P+  I  +++LL +  +       ++  + S  
Sbjct: 279 RQARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMANYRDDLQAINDSGE 338

Query: 62  IRLKFMRLAFGYT-------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTG 106
             L  +     Y+                +    L     ++   + V            
Sbjct: 339 SLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 398

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 R   +I++NL   A     RG  V  +  D        ++  G      +    
Sbjct: 399 TLQGDPRRIRQIVINLLSNAAKFTDRGSIVLRTFCD-DQSWFIEVEDTGCGIPEAKLTAI 457

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +       LA      L               L 
Sbjct: 458 FKPFVQATGCRGGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 506


>gi|213424962|ref|ZP_03357712.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 731

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 57/229 (24%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       + +  +   + + H+I +P+  I  +++LL +  +       ++  + S  
Sbjct: 252 RQARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMANYRDDLQAINDSGE 311

Query: 62  IRLKFMRLAFGYT-------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTG 106
             L  +     Y+                +    L     ++   + V            
Sbjct: 312 SLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 371

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 R   +I++NL   A     RG  V  +  D        ++  G      +    
Sbjct: 372 TLQGDPRRIRQIVINLLSNAAKFTDRGSIVLRTFCD-DQSWFIEVEDTGCGIPEAKLTAI 430

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +       LA      L               L 
Sbjct: 431 FKPFVQATGCRGGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 479


>gi|167462052|ref|ZP_02327141.1| sensor histidine kinase [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 459

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 58/222 (26%), Gaps = 19/222 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
            D+     S + H+I SP+ +I    + L    +  E  +           RL  +    
Sbjct: 236 EDMRQEFVSNVSHEIQSPLSSIQGFSKTLRTENLSSEQQEHYLSIIEKESSRLSVLSKLL 295

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER--------------AK 117
               S+D   G  + E            +   W   + +L  +                +
Sbjct: 296 LLLASLDKEEGTLEQECFDAAVQLKQVVMMSEWQWREKELVIQMDLPSTIVKGDPKLLYQ 355

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNV-- 172
           +  NL   A A    GG +++ +          +   G           F +    +   
Sbjct: 356 VWSNLLTNAIAHTDAGGTISLKIYQDTANVHVLISDTGCGIPEKHLLYIFDRFYKTDQAR 415

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  +   ++  +      +       +L 
Sbjct: 416 TRKESGTGLGLSIVKKIIDLHEGNITVNTEVNKGTAFHIVLP 457


>gi|254228567|ref|ZP_04921992.1| osmolarity sensor protein EnvZ [Vibrio sp. Ex25]
 gi|151938949|gb|EDN57782.1| osmolarity sensor protein EnvZ [Vibrio sp. Ex25]
          Length = 219

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 67/209 (32%), Gaps = 6/209 (2%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +  ALL + I HD+ +P+  I  + E++  ++  + + ++      +      + +++ 
Sbjct: 9   EEDRALLMAGISHDLRTPLTRIRLATEMMSPEDSYLAEGIISDTEECNEIISQFMDYLKP 68

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDLSRERAKILLNLFMVAHA 128
               +     +  +       E     +    ++         +    + + NL + A  
Sbjct: 69  VNKESFEPVDISTIASDVASSEGGYEAEIETDLNPNLPPAKGSAIAIKRAISNLVVNALR 128

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYY 185
                 K++  V   K     S++ NG      +    F     G+     +   +    
Sbjct: 129 YGNGWVKISTGVTADKQLVWISVEDNGPGIEHSQIARLFEPFTRGDTARGSEGTGLGLAI 188

Query: 186 VILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V  +  ++   ++     +  ++      
Sbjct: 189 VKRIISQHSGSVVMRNRSEGGLIAQISFP 217


>gi|149187870|ref|ZP_01866166.1| sensory transduction protein kinase [Vibrio shilonii AK1]
 gi|148838266|gb|EDL55207.1| sensory transduction protein kinase [Vibrio shilonii AK1]
          Length = 916

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +P+  I     +L E  ++      +     S+ 
Sbjct: 387 AKEEAERANVAK--SSFLANMSHEIRTPLNGIIGMSGILSESNLDPIQRDYLNTIDTSSQ 444

Query: 62  IR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              + ++   +   +       I         +  +++ S    
Sbjct: 445 TLLILINDILDISKIESGNLLISLHSSNLREIAYDTIAIVMSKAKEKDLQLQIRFSPQMP 504

Query: 108 KIDLSRERA--KILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFP 161
            + +  +    +IL+NL   A     +G            + +    F++   G      
Sbjct: 505 HMLIIDDHRLRQILMNLMSNAVKFTNKGHVRMEINVTEIDEQRCSIYFAIVDTGIGI-DK 563

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +K   I                   +       L       +  +            +E
Sbjct: 564 DKQDSIFKPFTQEDSSVTRQYGGTGLGLAISSQLVELMGGNIEIDSEKGKGSRFFFTIE 622


>gi|51598098|ref|YP_072289.1| hybrid two-component system regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|51591380|emb|CAH23046.1| putative hybrid two-component system regulatory protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 851

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
            K +   L     M  V  L   + HD  + +  I  SLEL      +       ++   
Sbjct: 482 RKALEEALVHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTATDSSDATRIHRALKAAE 541

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +      L F R    +  +V     L +++ +I   +     + +           +
Sbjct: 542 RGAQLTQRLLAFSRKQSLHPRAVAMKELLDNLDPLIRHSLPAHLTLTIEAQQPAWHAWID 601

Query: 115 RAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++   +      A  ++              +V       ++  +  +  +G+     
Sbjct: 602 VNQLENAIINLVMNARDAMEGRSGEIKIRTWNQRVERGEGRKQDMVVLEVADSGHGMTTA 661

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 662 -VKEQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVQIESEPGKGTRVCLQLPR 716


>gi|153948092|ref|YP_001402977.1| sensory box histidine kinase/response regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959587|gb|ABS47048.1| sensory box histidine kinase/response regulator [Yersinia
           pseudotuberculosis IP 31758]
          Length = 851

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
            K +   L     M  V  L   + HD  + +  I  SLEL      +       ++   
Sbjct: 482 RKALEEALVHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTATDSSDATRIHRALKAAE 541

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +      L F R    +  +V     L +++ +I   +     + +           +
Sbjct: 542 RGAQLTQRLLAFSRKQSLHPRAVAMKELLDNLDPLIRHSLPAHLTLTIEAQQPAWHAWID 601

Query: 115 RAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++   +      A  ++              +V       ++  +  +  +G+     
Sbjct: 602 VNQLENAIINLVMNARDAMEGRSGEIKIRTWNQRVERGEGRKQDMVVLEVADSGHGMTTA 661

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 662 -VKEQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVQIESEPGKGTRVCLQLPR 716


>gi|114566147|ref|YP_753301.1| signal transduction histidine kinase-like protein [Syntrophomonas
            wolfei subsp. wolfei str. Goettingen]
 gi|114337082|gb|ABI67930.1| multi-sensor hybrid histidine kinase [Syntrophomonas wolfei subsp.
            wolfei str. Goettingen]
          Length = 1442

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 66/242 (27%), Gaps = 31/242 (12%)

Query: 1    MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
            M + +       +      +L  + + H+I +P+  I   LELL E  +  E    ++ +
Sbjct: 801  MEQKLAQAKEIAESANYAKSLFLANMSHEIRTPMNGILGFLELLGETELSTEQQDYVQEA 860

Query: 57   SMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAV-----DKRV 100
              ++ I L  +     ++                   + D   +               +
Sbjct: 861  HRASEILLYLINDILDFSKIEAGKLAMEEIPFRVRTVVEDAVSLQAPKAREKGLEMHTLI 920

Query: 101  QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGN 156
            + +   E +       +IL NL   A      G  + I    +++    E  F +  +G 
Sbjct: 921  KSNVPDEVVGDPARLRQILNNLLSNAVKFTHTGEILVIVETINESSDKAEIAFEVSDSGI 980

Query: 157  LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                PE   ++                   +       L    +  +  +          
Sbjct: 981  GI-APEDMEKLFQPFTQADASTTRKYGGTGLGLAISYELVRLMEGTMQVKSKLGQGSKFY 1039

Query: 211  AL 212
              
Sbjct: 1040 FT 1041


>gi|332703006|ref|ZP_08423094.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553155|gb|EGJ50199.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 619

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 68/243 (27%), Gaps = 32/243 (13%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIR 54
           M +       +  + AL  L   I HD  + +G I    EL    L +     + ++ I 
Sbjct: 235 MEQLERQLRQAQKMEALGMLAGGIAHDFNNILGPIILHAELNMQGLPQDSPIFQGLEEIL 294

Query: 55  LSSMSAIIRLKFM-----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            ++  A   +  +     +              + +  +++   +  D R+         
Sbjct: 295 GAAQRARGLVDHILGLSRKREKDQPLCFQLSSLVKECLKLLRPSLPSDIRIVFENRSRWD 354

Query: 110 DLSRER---AKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSL 151
            +  +     ++++NL   A  ++                   ++              +
Sbjct: 355 LILADPTQVHQVIMNLATNAAQAMQDRSGELSITLSEAKVLENQIGSQGLPKGRYIQLEM 414

Query: 152 KINGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           +  G     PE   +I D    +  +     +    V  + +     +  E    +    
Sbjct: 415 RDTGPGI-APENLERIFDPFFTTKKEDTGTGLGLAVVRTIMNSIGGNVRVESTPGNGATF 473

Query: 210 SAL 212
             L
Sbjct: 474 RLL 476


>gi|329928018|ref|ZP_08282022.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
 gi|328938122|gb|EGG34519.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Paenibacillus sp. HGF5]
          Length = 359

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 62/214 (28%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           S + H+I SP+ +I      L             +++I             +       G
Sbjct: 137 SNVSHEIQSPLTSIRGFARALRNPRLTEEKRARYLEIIEGEGRRLSQLSDNLLKLSSLEG 196

Query: 76  SVDSLIGLGDIEQ-------VIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMV 125
              +                +  +   + KR+QV     ++++        ++  NL   
Sbjct: 197 DQPAFERARYRLDGQLRAVVLAHEPQWLAKRIQVDLDLAEVEIKATEDLLSQVWTNLLHN 256

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHD 180
           +    P  G +TI ++  ++    ++   G      +    F +    +           
Sbjct: 257 SIKFTPEDGMITIVLKAGEDGAEVTMTDTGVGMSDSDQLHIFERFYKADKSRNRAAGGSG 316

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V  +   ++ R+  +         + ++ 
Sbjct: 317 LGLSIVKRIVDIHQGRITVQSEPGKGSAFTVVVP 350


>gi|323700495|ref|ZP_08112407.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
 gi|323460427|gb|EGB16292.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio desulfuricans
           ND132]
          Length = 1086

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 59/239 (24%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK++  + S +   +   + + H+I +P+  I   L+LL    + +E  +       ++ 
Sbjct: 706 AKDLAESASRVK--SEFLANMSHEIRTPLNGIMGMLQLLRAGDLTEEQAEYAAYGIKASR 763

Query: 62  IRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWT 105
              + +                    V+    L  +EQ+               +     
Sbjct: 764 RLTRLLTDILDLSRIEAGKLDIREEPVNLRDTLSGLEQMFAVAARSKGLSLVFDLPDDLP 823

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARF 160
                      ++L+NL   A                  ++      +F++   G     
Sbjct: 824 DRLFGDDTRIQQVLVNLIGNAIKYTETGGVTVEVTTLPRLRPDTVHVLFTVTDTGIGIPD 883

Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  T                    +       +       L  +       V    + 
Sbjct: 884 DKLGTVFEHFTQVSSGFTRHYQGAGLGLAITKRMIGLLGGTLAVDSEPGRGTVFGLCVP 942


>gi|312222389|emb|CBY02329.1| similar to autoinducer 2 sensor kinase/phosphatase luxQ
            [Leptosphaeria maculans]
          Length = 2006

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/245 (8%), Positives = 66/245 (26%), Gaps = 34/245 (13%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + + +   + +    +   S + H+I +P+  I   +  L +  +  E ++ + +   S 
Sbjct: 1274 LEQTLKETMDA---KSKFLSNMSHEIRTPLNGISGMVNFLLDSVLNSEQLEHVNIIKAST 1330

Query: 61   IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                               +  + + + +  S+   +   ++   I+  + ++  V+   
Sbjct: 1331 DSLLNLINDILDLSKVEAGMIKLSMEWLHVPSLLEEVNDLNMGLAIQKGLELNYLVEEGV 1390

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----------SKNENIFSLKIN 154
                        ++LLN+   A     RG                    +    F +   
Sbjct: 1391 PTMVKGDKFRIRQVLLNVVGNAIKFTNRGEIFVRCKMQPPDRSGLLKEHETMIRFEVVDT 1450

Query: 155  GNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            G      E        +              +     +     +  R+  + +       
Sbjct: 1451 GQGFTEAEAKHLFKRFSQIDASSTRQHGGTGLGLAISMQFVELHGGRMDAQSVPGRGSTF 1510

Query: 210  SALLE 214
               ++
Sbjct: 1511 FFTIK 1515


>gi|298374311|ref|ZP_06984269.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19]
 gi|298268679|gb|EFI10334.1| sensor histidine kinase/response regulator [Bacteroides sp. 3_1_19]
          Length = 905

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 4   NICFNLSSMDLVALLC-------------SRICHDIISPIGAIHNSLELL---DEVGIED 47
           N     ++  L++L               + + H++ +P+  I   L+ L          
Sbjct: 377 NRKMRQANRKLISLNAEMKEVTAQKLQFFTNVSHEVRTPLTLILAPLDRLIISLRESPYA 436

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDK 98
             + LI+ ++   +  +  +       G  +                             
Sbjct: 437 SDLGLIQKNANRLLRVINQILDFRKVEGKQEKLAVREIDLVPFVGEIKSYFDSMASVRAI 496

Query: 99  RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
               + + ++  L  +     K+ +NL   A    P GG V I + + ++     +   G
Sbjct: 497 AYTFTSSIKQCTLWIDPDLLEKVFVNLLSNAFKFTPEGGSVRIELTEEEDRVFIQVIDTG 556

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  +             E       I  + V    H +   +  E         +  L K
Sbjct: 557 SGIQPGNLPHLFDRFYTEDRSMGTGIGLHLVKEYIHMHGGEIRVESEPGQRTTFTVCLRK 616


>gi|308067819|ref|YP_003869424.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|297185567|gb|ADI24140.1| sensor histidine kinase kin1038 [Paenibacillus polymyxa]
 gi|305857098|gb|ADM68886.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 629

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 63/223 (28%), Gaps = 10/223 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           M  N       M++++ L + + H++ +P+      L+L+   E G   + + +      
Sbjct: 405 MFNNELQRSEKMEIISDLAASVAHEVRNPLQVTRGFLQLMSKQEDGKNKDYLHIALEELD 464

Query: 59  SAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            A   +                   +D    +  I   + +       + +    +    
Sbjct: 465 RASAIITDFLTFAKPEFDQTKTLTILDEFKHIEGIISPMANLQGGKISLDIPQEIKVRGN 524

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
           S +  +  +N+   +  +L   G + +       E +  ++ NG          ++ +  
Sbjct: 525 SSKFKQAFINIIKNSIEALRDQGHIHVWAYVDNGEAVIHIRDNGEGMDAQTLS-RLGEPY 583

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +       +      ++            +    
Sbjct: 584 FSNKTKGTGLGMMVTFRIIETMNGKITFTSAKGVGTEATIRFP 626


>gi|294677689|ref|YP_003578304.1| C4-dicarboxylate transport sensor protein DctB [Rhodobacter
           capsulatus SB 1003]
 gi|294476509|gb|ADE85897.1| C4-dicarboxylate transport sensor protein DctB [Rhodobacter
           capsulatus SB 1003]
          Length = 599

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 68/226 (30%), Gaps = 23/226 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVM-------QLIRLSS 57
            S  L  L  + + + H++  P+ A+   L   +LL +     E +        LI    
Sbjct: 361 QSSKLAVLGEMSAAVSHELNQPLAAMKTYLAGAKLLLQRERVPEALSSFQRIDDLIERMG 420

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLSR 113
                   + R        VD    L     ++E  +       V               
Sbjct: 421 AITRQLKSYARKGGDAIEPVDLRAALSSALAMMEPQLKARTVKIVRNLPRGAVMVQADRI 480

Query: 114 ERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
              ++++NLF  A  +    R  ++ I++   +   + +L  NG      E   ++ +  
Sbjct: 481 RLEQVIINLFRNALDATKGLRAPRIEITLVSEEEVAVLTLADNGPGLTDLE---KLFEPF 537

Query: 172 VESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +    +   +       +  +   RL     +    V    L +
Sbjct: 538 WTTKKPGEGTGLGLAISSSIVADFGGRLTARNGEGGGAVFEMRLPR 583


>gi|293374339|ref|ZP_06620666.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|325841305|ref|ZP_08167406.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|292647002|gb|EFF64985.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sanguinis PC909]
 gi|325489986|gb|EGC92333.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 641

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 31/235 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-------RLSSMSA 60
               L AL  L S + HD  + +  I   + L+  +  ++ +++ +       R S+   
Sbjct: 142 QLEKLQALGQLTSGVSHDFNNQLNGILGYVALMKTMTEDETLLRYMDGIERSVRHSTELT 201

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI-- 118
              L F         ++D +  + D   +++  I     + +    ++  +  + +++  
Sbjct: 202 RQLLAFSHKPESKRMNIDLVPIVKDTVNMLKHTIDRRICIDLQIEPDEYFILGDSSQLNN 261

Query: 119 -LLNLFMVAHASLPRGGKVT----------------ISVQDSKNENIFSLKINGNLARFP 161
            +LNL + A  ++   G++                  +     +  I  +   G      
Sbjct: 262 AILNLCINARDAIKGQGRIELVLTHAQMESIPGNLLNTNITPNDYAILKITDTGCGIEER 321

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +I      +        +    V+     +   L  E +       +  L 
Sbjct: 322 -LQHKIFKPFFTTKEVGKGTGMGLAGVVDAIRSHNGALTLESVVGKGTTFTLYLP 375


>gi|302382311|ref|YP_003818134.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302192939|gb|ADL00511.1| integral membrane sensor signal transduction histidine kinase
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 580

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 59/218 (27%), Gaps = 24/218 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           + + H++ +P+ A+    +++ +     +  +  +       +    L  +      +  
Sbjct: 334 ANMSHELRTPLNAVLGFSDVMRQRLFGPLSPKYAEYADNIHEAGSHLLDLIGDVLDVSKI 393

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQ---------------VSWTGEKIDLSRERAKILLN 121
                 L        + ++    +                           R   +I LN
Sbjct: 394 EAERYELSREPFDAREVVSAAVALVRGTATDGGVTLASLLPDDPLAVEADRRALKQITLN 453

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STI 176
           L   A    P GG VT++++         +   G      +   ++     +        
Sbjct: 454 LLSNAIKFTPSGGSVTLTLETIGPYLEMVVADTGVGIAARDLK-RLGRPFEQAGEADQRA 512

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  LA  +  R+  E        ++  L 
Sbjct: 513 KGTGLGLSLVRALAELHGGRMSIESTLGEGTAVTVRLP 550


>gi|229162944|ref|ZP_04290900.1| hypothetical protein bcere0009_37130 [Bacillus cereus R309803]
 gi|228620350|gb|EEK77220.1| hypothetical protein bcere0009_37130 [Bacillus cereus R309803]
          Length = 424

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 19/224 (8%), Positives = 67/224 (29%), Gaps = 11/224 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQ 51
           + +        +++V+ L + + H++ +P+  +   ++LL+                 + 
Sbjct: 196 LLRTEMQKSEKLNIVSELAASVAHEVRNPLTVVRGFIQLLESTEDVKNKDYMRLVLAELD 255

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                    +   +       +      LI +  +         V  +V++S +   I  
Sbjct: 256 RAEQIISDYLNLARPQIEKKEHICLSAQLIEMTTLMSSFAAMQGVYLQVEISESLYTIGD 315

Query: 112 SRERAKILLNLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             +  + ++N+      ++    G + ++      + +  +K +G      E+  ++   
Sbjct: 316 KTKLKQAIMNVVKNGIEAIQGNKGYLKVTAIQKDEKIVIRVKDSGVGM-TKEQLARLGQP 374

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       +   +   L  +           +L 
Sbjct: 375 YYSLKEKGTGLGLMVTFSILQAHNGILEYKSESGKGTEAIIILP 418


>gi|254511247|ref|ZP_05123314.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacteraceae bacterium KLH11]
 gi|221534958|gb|EEE37946.1| periplasmic sensor signal transduction histidine kinase
           [Rhodobacteraceae bacterium KLH11]
          Length = 592

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSL---ELLDEVGIEDEVMQ-------LIRLSS 57
            S  L AL  + + + H++  P+ A+   L    LL      +E +        LI    
Sbjct: 361 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLRRNRPEEALASFGRIDGLIERMG 420

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKIDLSR 113
                   + R        V+    L     ++E  +        ++        +    
Sbjct: 421 AITRQLKSYARKGADAFSPVNLGEALASSLSMMEPQLRQRHVKITQILPEDPVIVMGDRM 480

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +     +  + +   + ++ + +++ NG+     E    + +   
Sbjct: 481 RIEQVMVNLLRNALDATKSVDEPDVEIILAAGDQAVLTVRDNGHGI---EDIENLFEPFY 537

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    D   +       + +++  RL          V    L 
Sbjct: 538 TTKRPGDGVGLGLAISSGIVNDHGGRLTARNGQQGGAVFEMQLP 581


>gi|218264515|ref|ZP_03478340.1| hypothetical protein PRABACTJOHN_04043 [Parabacteroides johnsonii DSM
            18315]
 gi|218221946|gb|EEC94596.1| hypothetical protein PRABACTJOHN_04043 [Parabacteroides johnsonii DSM
            18315]
          Length = 1323

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 24/239 (10%)

Query: 1    MAKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--------Q 51
            M +     +  ++   L   S I H+  +P+  I + +ELL +       +        +
Sbjct: 774  MERKEKEAIEELNQAKLQFFSNISHEFRTPLTLIISQIELLLQSSSLSPSIYNKLLKVYK 833

Query: 52   LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------KRVQVS 103
                        L F +L  G+         +    + I                     
Sbjct: 834  NTYHMRNLISELLDFRKLEQGHMKLKVYEQDIVSFLKEIYLSFYEYASGHSITYNFTAPE 893

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     ++  K+  NL   A         + + +++ +NE I  +  NG      + 
Sbjct: 894  GRVLCSFDPKQMQKVFYNLLSNAFKYTKPNATIEMILENKENEVIIKVIDNGIGISKDDI 953

Query: 164  FTQIVDGNVE-------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                             +   S  I       +   +   +  E    +  +    L K
Sbjct: 954  DKIFDRFYQAENGISNITKTPSTGIGLSLTKNIIELHHGTIQVESTPGYGSIFIVRLLK 1012


>gi|194366937|ref|YP_002029547.1| integral membrane sensor signal transduction histidine kinase
           [Stenotrophomonas maltophilia R551-3]
 gi|194349741|gb|ACF52864.1| integral membrane sensor signal transduction histidine kinase
           [Stenotrophomonas maltophilia R551-3]
          Length = 592

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI+ +++LL+E       +  ++Q+IR       
Sbjct: 362 RAESLTLSAMGRFSASLAHEIRNPLAAINYAVQLLEEGTGFNESDRRLLQIIRQQCQRTN 421

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSR 113
             ++ +        +    + L    +         +         +    +      ++
Sbjct: 422 GIVESVLGLARRERATPENVDLAAFVRRFVLEYKQGQTLETDSIEPIINDSSVMAQVDAK 481

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              ++L  L   A      G +           +   +  +   G          Q+   
Sbjct: 482 HLYQVLTVLVHNALKYGRIGQQPARVRLRVAQHERSAVIDVMDRGPGIPES-VAAQLFRP 540

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ RL    +         +L 
Sbjct: 541 FFTTSEHGTGLGLYIARELCRANQARLDYIPVPAGGSCFRLVLP 584


>gi|254286552|ref|ZP_04961508.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
 gi|150423310|gb|EDN15255.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae AM-19226]
          Length = 1331

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|114704558|ref|ZP_01437466.1| probable nitrogen regulation transmembrane protein [Fulvimarina
           pelagi HTCC2506]
 gi|114539343|gb|EAU42463.1| probable nitrogen regulation transmembrane protein [Fulvimarina
           pelagi HTCC2506]
          Length = 735

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 64/220 (29%), Gaps = 22/220 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQLIRLSSMSAIIRLKF 66
           A +  RI H+I +P+  I  S E +          +  + D  +  I          +  
Sbjct: 506 ADVARRIAHEIKNPLTPIQLSAERIRRRYGKRIEDDREVFDRCVDTIVRQVSDIGRMVDE 565

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------SWTGEKIDLSRERAKILL 120
                           L D+ +       +     V               +R   +   
Sbjct: 566 FSNFARMPKPTMEPTDLRDVIKEAIFAREMGDHGVVFEKDIPDEPLIGSYDTRLLGQAFG 625

Query: 121 NLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI 176
           NL   A  +L       GK+T+  +  +  +  S+  NG      +   ++++  + +  
Sbjct: 626 NLVKNAVEALEGAGISHGKITVRARPGERHHEVSIIDNGQG-FPKDDRDRLLEPYMTTRE 684

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDH--NVVLSALLE 214
               +    V  +  E+   +  E         ++  +L 
Sbjct: 685 KGTGLGLAIVRKIIEEHGGTIALEDAPGQPSGAMVRVILP 724


>gi|94263955|ref|ZP_01287757.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455627|gb|EAT05809.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 779

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSM 58
           +N  F    ++ + +L   I HD  + +  I      +L +          ++ IRL++ 
Sbjct: 389 ENQLFQARKLESIGVLAGGIAHDFNNILTPIIMRSGMALTMAPADSPLRRNLEQIRLAAE 448

Query: 59  SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109
            A   +    +F R +      +     + +  + +   +  +  ++++           
Sbjct: 449 RAKTLVGQILEFSRQSDHKPRKLALEPVVKETLKFMRSTLPANIALELTGHSGGGQDMVN 508

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---------------NENIFSLKIN 154
                  ++++NL   A  ++ R G       +                 +    ++  +
Sbjct: 509 ADPTRITQVVMNLVTNAAHAMRRQGGRVTVSLERWADGGKAPAPGLPADQDYLQLTVSDD 568

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     PE   +I +    +    +   +    V  +       +     +      +  
Sbjct: 569 GEGI-PPEIIPRIFEPYFTTKRRGEGSGMGLAMVHGIVKALGGAITVHSTEGEGTTFNVF 627

Query: 213 LE 214
           L 
Sbjct: 628 LP 629


>gi|51832261|gb|AAU10314.1| two-component histidine kinase [Alternaria brassicicola]
          Length = 997

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 727 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 786

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 787 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSSASRANERKLNLAYDVSY 846

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
                 +  S    +I+LNL   A                             F++   G
Sbjct: 847 KVPDYVVGDSFRLRQIILNLVGNAIKLTEPGEVKVAISMAQEQECDPDHYVFQFAVSDTG 906

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 907 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDAGKGSVFY 966

Query: 211 AL 212
             
Sbjct: 967 FT 968


>gi|24376107|ref|NP_720150.1| osmolarity sensor protein [Shewanella oneidensis MR-1]
 gi|24351139|gb|AAN57594.1|AE015895_3 osmolarity sensor protein EnvZ [Shewanella oneidensis MR-1]
          Length = 438

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 10/220 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  D+  ++D ++  I     
Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEDDQYLKDGIVNDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R     +     +  L       E     +  + ++   E +       ++
Sbjct: 280 IISQFIAYIRQDQEASREPGQINKLIQDIAQAEANRDGEIELALADCPEALFQGLAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G V IS Q       FS++ NG      +    F     G++   
Sbjct: 340 LSNLVENAFRYGS--GWVRISSQFDGKRIGFSVEDNGPGIDESQIPTLFQPFTQGDIARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +    +  +   ++ ++         +     L +
Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQITLSNRAAGGLKAQVWLPR 437


>gi|99081303|ref|YP_613457.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
 gi|99037583|gb|ABF64195.1| periplasmic sensor signal transduction histidine kinase [Ruegeria
           sp. TM1040]
          Length = 600

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 69/233 (29%), Gaps = 22/233 (9%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIED------E 48
           +A        S  L AL  + + + H++  P+ A+   L     LL     ++       
Sbjct: 361 LAVAEQSLAQSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRNRPDEALSSFGR 420

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSW 104
           +  LI            + R        V+    L     ++E  +        R+    
Sbjct: 421 IDDLIERMGAITRQLKSYARKGGDAFSPVNMGDALASSLSMMEPQLRQRHVQITRILPDE 480

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEK 163
               +       ++++NL   A  +     +  + +   +      +++ NG+  +  + 
Sbjct: 481 PVFVMADRMRLEQVMVNLLRNALDATKSVEEPEVEIILAAGETATLTVRDNGDGIQDFDS 540

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +    D   +       + ++   RL     D    V    L 
Sbjct: 541 ---LFEPFYTTKQPGDGVGLGLAISSGIVNDLGGRLTARNSDAGGAVFEMQLP 590


>gi|328872878|gb|EGG21245.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1240

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 67/235 (28%), Gaps = 28/235 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               L ++ +     + I H+I +P+  +    E+L    +  E  ++      S  I  
Sbjct: 663 RDRALKAIKIKTQFTATISHEIRTPLNGLIGMTEMLLTTNLTKEQREIAETIQKSGDILH 722

Query: 65  ----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER----- 115
                 +  +      ++  +   D    IE+ ++      V    E +    +      
Sbjct: 723 SVTSDVLDFSKIEESKLELEMIEFDFIGCIENTLSTLSMSCVDKPIEFLLHFEDNVAIKI 782

Query: 116 -------AKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKF 164
                   +I+LN+   A     +G   T        + K +   S++  G      EK 
Sbjct: 783 IGDPIRLRQIILNVGSNAVKYTNQGHIYTHVSILERVNGKIKIKVSVEDTGIGI-PTEKR 841

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPE-IIDDHNVVLSAL 212
            ++ +        +        +       L       +  E  ++      S  
Sbjct: 842 DRLFEPFSQVDASITRRYGGTGLGLAICDRLTKLMNGEMTLEKSVEGQGSTFSMT 896


>gi|323135695|ref|ZP_08070778.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
 gi|322398786|gb|EFY01305.1| PAS/PAC sensor signal transduction histidine kinase [Methylocystis
           sp. ATCC 49242]
          Length = 358

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 64/238 (26%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           +++        +     +   H++ +P+ ++   +E L      +    ++ + ++R  +
Sbjct: 112 RDLTEAHRVERMRVDFVANASHELRTPLASLLGFVETLQGPAKNDAAAREKFLGIMREQA 171

Query: 58  MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQ-VIEDFIAVDKRVQVSWTGEK 108
                 +  +         +       VD  + +  I   +          + +      
Sbjct: 172 QRMARLVDDLLSLSRIEQHMHVRPATPVDLTLLVAHIVDTLTPMAEEDAIPLALDLAPNV 231

Query: 109 IDLSRERA--KILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPE 162
           I         +I+ NL   A             +            FS++ +G     PE
Sbjct: 232 IVPGDRDELARIIENLIENALKYGRNENGGEKPIEISLTRKDAVATFSVRDHGPGV-APE 290

Query: 163 KFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +                 +    V  +   ++ RL  E       +    L 
Sbjct: 291 HIPRLTERFYRVDAGKSRAKGGTGLGLAIVKHIVLRHQGRLAIESALGEGSLFKVTLP 348


>gi|254560907|ref|YP_003068002.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
 gi|254268185|emb|CAX24095.1| hypothetical protein METDI2463 [Methylobacterium extorquens DM4]
          Length = 1125

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 37/245 (15%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS- 59
                S+    +   + + H+I +P+  I    +LL +       +   ++LIR+S  S 
Sbjct: 582 EAERASAAK--SEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLELIRVSGESL 639

Query: 60  ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGE 107
                  L   ++  G          LG + +     +          V+ R+       
Sbjct: 640 LTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPVS 699

Query: 108 KIDLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLA 158
            +  +    ++L NL   A    P           G V  +   +     F +   G   
Sbjct: 700 VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADGGTAEALRFEISDTGIGI 759

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LS 210
              ++  ++          +        +       L       +  E  +        +
Sbjct: 760 APSQRH-RLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFT 818

Query: 211 ALLEK 215
             L +
Sbjct: 819 LALPR 823


>gi|257126796|ref|YP_003164910.1| histidine kinase [Leptotrichia buccalis C-1013-b]
 gi|257050735|gb|ACV39919.1| histidine kinase [Leptotrichia buccalis C-1013-b]
          Length = 533

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/216 (9%), Positives = 62/216 (28%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             S   H++ +P+  I    E++      ++ I  E +  I   + +    ++ +     
Sbjct: 270 FVSDASHELRTPLAIIKGYAEIIRKRGTTDIDIFVESIDSIISETDNMRNLIQKLLFLAK 329

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---------AKILLNLF 123
              +  +   +      +   I  D  V +      +++ ++           + +  L 
Sbjct: 330 GEITKINTKFVDIDANEMVHQIHSDTVVSIKTHSFHLEMGKDYKIKGDETLLQQAIRALI 389

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES--TIDS 178
             A         V I           S++  G      +    F +    ++        
Sbjct: 390 ENAVKYSEPHTNVYIKSFIKNGFGRISIRDEGVGISDEDAKRIFDRFYRVDLSRTKATGG 449

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   +  ++  +   +    +S +L 
Sbjct: 450 TGLGLAIVKRIVEIHNGKIEIDSKMNEGTEISIVLP 485


>gi|254974440|ref|ZP_05270912.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255091832|ref|ZP_05321310.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255313567|ref|ZP_05355150.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255516251|ref|ZP_05383927.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255649349|ref|ZP_05396251.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|306519439|ref|ZP_07405786.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
          Length = 309

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 70/232 (30%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSA 60
           +N   +L   D  +  L + + HD+ +P+  +   L+ +    +  +  +    ++   A
Sbjct: 77  ENKLLSLKKSDKASKQLMTSLSHDVRTPLTTLIGYLDAVHSGIVIGQEREEYLEIARRRA 136

Query: 61  IIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                ++ + F +                  +    +      I     ++  + +    
Sbjct: 137 YDLKDYIDVLFDWFRLNSDEFTLSIESVEIAELSRNILKDWIPIFHEKKLNFEIDIPENR 196

Query: 107 EKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
             ++L  +  ++++ NL     A            +DS    +  +  +G        P 
Sbjct: 197 LMVNLDPDGYSRVVNNLVQNVLAHSKARQIKITMSEDS-RMVLLRVDDDGVGIARENLPH 255

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F ++   +   +     +    V  +      ++  E       V +  L 
Sbjct: 256 IFERLYKCDKGRSEKGSGLGLSIVSQMVERMGGQISVESEIGKYTVFTVSLP 307


>gi|224368733|ref|YP_002602894.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
 gi|223691449|gb|ACN14732.1| sensory box histidine kinase/response regulator [Desulfobacterium
           autotrophicum HRM2]
          Length = 662

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 71/234 (30%), Gaps = 23/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIR 54
           +    +   M+ V  L + + H+I +P+G I    ++L E               ++  R
Sbjct: 428 QEQLTHAQKMESVGRLAAGVAHEINTPLGIILGYAQILLEDIPPQGQTYKDVATIVKQTR 487

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----RVQVSWTGEKID 110
           + S      L F R +     + +    + ++  V+E    +      R+          
Sbjct: 488 ICSKIVADLLSFSRSSQRIITTFNMNGAIEEVLDVVEHTFGLSHVNVERIYDQPQLWIKG 547

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQIV 168
              +  ++ +NL   A  ++   G + I      +K E    +   G+     +   ++ 
Sbjct: 548 DKEKLKQVCVNLLNNAFDAIEENGTIQIKTVLAITKKEVKIIISDTGHGIAQAD-MKKLF 606

Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIID------DHNVVLSALLE 214
           +    +        +       +  E+   +            +    +   L 
Sbjct: 607 EPFYTTKGPGRGTGLGLSVTFGIIKEHNGTIEVFSPPLPEEKLERGTSVVVTLP 660


>gi|237806831|ref|YP_002891271.1| histidine kinase [Tolumonas auensis DSM 9187]
 gi|237499092|gb|ACQ91685.1| histidine kinase [Tolumonas auensis DSM 9187]
          Length = 872

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 75/236 (31%), Gaps = 27/236 (11%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSS--- 57
               + S  + A+  L   I HD  + +  I  +LELL  D+  + +   Q I  +    
Sbjct: 495 EAELIHSQKMKAVGHLTGGIAHDFNNLLAVILGNLELLLTDDDALAERTRQRIERAYKAT 554

Query: 58  ----MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                     L F R       ++D    + ++ +++E  +    R+++    E      
Sbjct: 555 ERGAQLTQRLLAFSRKQALRPRAIDLAELVTNLRELMEHSLPASLRLELDIQSELRPAWM 614

Query: 114 ERAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  ++  +L      A  ++              +V  +    ++     +   G     
Sbjct: 615 DANQLENSLLNLVVNARDAMEGRSGVIRIRLFNQRVQRTSGRVQDMVTVEVIDQGCGM-T 673

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           PE   ++ +    + +      +    V     ++  R+  +   +    +   L 
Sbjct: 674 PEVLQRVFEPFFTTKVAGKGSGLGLSMVYGFVRQSGGRVQIDSEPERGTCVRLQLP 729


>gi|218529951|ref|YP_002420767.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218522254|gb|ACK82839.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 695

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 75/239 (31%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLD------EVGIEDEV--M 50
            K +  +L  +  L A+  L   I HD  + +  +  +L+L+       E  +      +
Sbjct: 307 RKELELSLQHASKLEAVGRLTGGIAHDFNNMLSIVIGNLDLVKISLSGNEKALRRIESAI 366

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +     +      L F R +     ++D    +  + +++E  +     +         +
Sbjct: 367 EGAHRCAELTSRLLAFSRRSPLQPRALDFTSFIPGLIKLLERTLGERIAISADLEDGLQE 426

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSK----------NENIFSLKINGNL 157
           +  + A+    L      A  ++P GG + I ++  +          +    ++  +G  
Sbjct: 427 VCVDHAQFEAALINLAVNARDAMPDGGTLGIRIKRHEADAQEDSEQVHSVEIAVTDSGTG 486

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P    ++ +    +        +    V     ++   +  +   D        L 
Sbjct: 487 M-SPAVLARVFEPFFTTKEAGKGTGLGLSMVYGFVQQSGGTIAVDSNPDQGTRFVITLP 544


>gi|146294928|ref|YP_001185352.1| osmolarity sensor protein [Shewanella putrefaciens CN-32]
 gi|145566618|gb|ABP77553.1| integral membrane sensor signal transduction histidine kinase
           [Shewanella putrefaciens CN-32]
          Length = 438

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 10/219 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSM 58
           MA ++          ALL + I HD+ +P+  I  + E++  ++  ++D ++  I     
Sbjct: 223 MAHSMKQLEQD---RALLMAGISHDLRTPLTRIRLASEMMVEEDQYLKDGIVNDIEDMDA 279

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                + ++R        +  +  L       E   A +  + ++   E +  +    ++
Sbjct: 280 IISQFIAYIRQDQEANRELAQINKLIQDIVQAEANRAGEIEMVLTDCPEALFQAIAIKRV 339

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST 175
           L NL   A       G + IS Q       FS++ NG      +    F     G++   
Sbjct: 340 LSNLVENAFRYGS--GWIRISSQYDGKRIGFSVEDNGPGIDESQIQKLFQPFTQGDIARG 397

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    +  +   ++ ++      +  +     L 
Sbjct: 398 SVGSGLGLAIIKRIIDRHQGQITLSNRKEGGLKAQVWLP 436


>gi|309389129|gb|ADO77009.1| Hpt sensor hybrid histidine kinase [Halanaerobium praevalens DSM
           2228]
          Length = 1043

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 58/231 (25%), Gaps = 28/231 (12%)

Query: 10  SSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-- 63
              +L     +   + + H+I +PI AI   + L+ +  +  +    ++    S +    
Sbjct: 308 QKAELANKAKSEFLANMSHEIRTPINAIKGLIYLILDTPLSMQQKDYLKKIQSSTVSLSR 367

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---- 117
                +  +      +D       ++ V+ D              E    +    +    
Sbjct: 368 LINDILDFSKIEAKKLDLEAEEFALDDVLHDLSNQAAMKAYDKGLEFFYDTDHVPQKLVG 427

Query: 118 -------ILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                  ILLNL   A      G        I   + K +  F +K  G      E+   
Sbjct: 428 DSLRLGQILLNLVSNAIKFTETGEVRLIVRIIKKTEQKIKLKFIVKDTGIGMTKEEQQKL 487

Query: 167 IVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                              +       L  +    +  E         +  
Sbjct: 488 FSQFTQADSSTTRKYGGTGLGLTISQRLVEKMGGEIKVESKPAEGSTFTFT 538


>gi|317056869|ref|YP_004105336.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315449138|gb|ADU22702.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 508

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 62/231 (26%), Gaps = 22/231 (9%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSM 58
           N+   LS+ + +     S + H++ +P+ AI    E +     +V    + M++I   + 
Sbjct: 243 NMAEELSNTEQMKNEFISSVSHELRTPLTAIKGWTETVATMYGDVETFKKGMRVINSETE 302

Query: 59  SAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                ++ +                      +    +   ++            +     
Sbjct: 303 RLSQMVEELLDFSRIQDNRLMLQMDTIDILAELGETVLIYQERARVLGITLNYFEPDMLP 362

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
                     ++ +N+   A     +G  V++   + + E   S+   G      +    
Sbjct: 363 FVYGDKNRLRQVFINVVDNAIKYSDKGDTVSVEAYEEEGEICISVSDTGIGISKEDLPRI 422

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    N         I       +   +   L  +        +   L 
Sbjct: 423 KQKFFKANQTRR--GSGIGLAVADEIIARHGGTLTIDSEQGVGTTVMITLP 471


>gi|311112933|ref|YP_003984155.1| sensor histidine kinase [Rothia dentocariosa ATCC 17931]
 gi|310944427|gb|ADP40721.1| sensor histidine kinase [Rothia dentocariosa ATCC 17931]
          Length = 385

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/217 (9%), Positives = 58/217 (26%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RLSSMSAIIRLK-------- 65
             + + H++ +P+GAI    E ++E   + E +          +      ++        
Sbjct: 151 FVANVSHELKTPVGAISLLAEAIEEARDDPESIDYFTSRLHKETKRLTALVRDIIELSRL 210

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM- 124
                 G    V     + +     +           +      ++  +   + + +   
Sbjct: 211 QSADVIGSGKLVSINNLVAEAVDRSKLAAEAKNITIHTDAHADREVYADPELLGIAVHNL 270

Query: 125 --VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVESTID 177
              A    P   +V ++V+ S    + S+   G      +    F +             
Sbjct: 271 IENAVRYSPEDTRVDVTVETSHENLLISVTDQGAGISEEDQKRIFERFYRVDPARSRQTG 330

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +    V  +  ++   +  +         +  L 
Sbjct: 331 GTGLGLSIVKHVMAQHGGMVTVDSTLGEGSTFTLSLP 367


>gi|283852658|ref|ZP_06369924.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283571949|gb|EFC19943.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 1101

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 60/239 (25%), Gaps = 28/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +P+ AI    E+     + +E    +   S SA 
Sbjct: 584 AKEDADRANQAK--SQFLAGMSHEIRTPMNAILGLTEVALRTELTEEQRDYLDTVSDSAR 641

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSWT 105
             L  +     ++      + L  ++  + + +                     +     
Sbjct: 642 HLLNILNDILDFSKIEARQMELEAVDFDLHELLRSAIKTLGLGAREKGLRLALDIFPGLP 701

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARF 160
                   +  ++L+NL   A      G     +   +         +F +   G   R 
Sbjct: 702 RHVCGDPGKVRQVLVNLIGNAVKFTAAGSVTVRAGLAAGAVGEPGRLVFEVADTGIGIRP 761

Query: 161 P-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +  D +         +       LA      +            +  + 
Sbjct: 762 DMLEVIFDSFRQADNSTARQYGGTGLGLAISRELAGLMGGEIRAASTPGCGSRFTFTVP 820


>gi|290957942|ref|YP_003489124.1| two component system sensor kinase [Streptomyces scabiei 87.22]
 gi|260647468|emb|CBG70573.1| two component system sensor kinase [Streptomyces scabiei 87.22]
          Length = 513

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 68/235 (28%), Gaps = 20/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---------GIEDEVMQ 51
           + K +    +  +      + + H++ +P+ AI    E+L+E           + +  ++
Sbjct: 255 LEKKVDDMSAREEASRRFVADMSHELRTPLTAITAVTEVLEEELDADTGSLDPMIEPAVR 314

Query: 52  LIRLSSMSAIIRLKFMRLAFGY------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           L+   +      ++ +     +          D  I       +          +     
Sbjct: 315 LVVSETQRLNTLVENLMEVTRFDAGTARLVLDDVDIADQITACIDARAWLDAVDLDAERG 374

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARF---P 161
                  R    IL NL   A        +V +   D +  + +  ++ +G        P
Sbjct: 375 IIIKLDPRRLDVILANLIGNALKHGGSPVRVRVREGDANDADLLIEVRDHGPGIPEDVLP 434

Query: 162 EKFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +    +      +   +     +  AH +   +      +   V +  L +
Sbjct: 435 HVFDRFYKASASRPRSEGSGLGLSIALENAHIHGGDITAANSPEGGAVFTLRLPR 489


>gi|257094177|ref|YP_003167818.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046701|gb|ACV35889.1| multi-sensor signal transduction histidine kinase [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 789

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 50/216 (23%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           SR+ H++ +P+ AI    +LL   G      +               +            
Sbjct: 547 SRMSHELRTPLNAILGFGQLLAMPGDAALSAEQADNVQEILRAGRHLLGQVNEVLDLARV 606

Query: 80  ---------------LIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKILLNLF 123
                           I    +  V     A    +            ++   ++LLNL 
Sbjct: 607 ESGRIELKLEAVPLAPIVADCVALVRPLAEARGISIDADIDDAPLRADAKRLQQVLLNLL 666

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE-----STIDS 178
             A       G + I+          ++  +G      E   ++             I+ 
Sbjct: 667 SNAIKFNREQGTIRIAGTRHGGRLRLAVSDSGRGI-DSEHLQRLFQPFERLASAYDGIEG 725

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       L       +      D     S  L 
Sbjct: 726 TGVGLALTQRLVEAMGGIIQVASQLDVGSTFSLDLP 761


>gi|229523546|ref|ZP_04412951.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
 gi|229337127|gb|EEO02144.1| hypothetical protein VCA_001112 [Vibrio cholerae bv. albensis
           VL426]
          Length = 1342

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 597 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 656

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 657 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 716

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 717 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 776

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 777 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 836

Query: 209 LSA 211
              
Sbjct: 837 FEF 839


>gi|167765313|ref|ZP_02437426.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183]
 gi|167696941|gb|EDS13520.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183]
          Length = 1354

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 65/229 (28%), Gaps = 20/229 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAI----------------HNSLELLDEVGIE 46
            K     ++ M +   +   I H++ +P+  I                 N LE +      
Sbjct: 827  KEHREEINQMKMRFFI--NISHELRTPLTLILAPLQEVISKINDRWTRNQLEYIQRNANR 884

Query: 47   DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
               +    +    A + +  +++  G    +     L   +      I       +    
Sbjct: 885  LLHLVNQLMDYRRAELGVFELKIKKGNAYRLIRENFLYYDKLARHKEIHYAFHSDLE-EK 943

Query: 107  EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
            E++        I+ NL   A      G  +T+++++  N  I  +   G      ++   
Sbjct: 944  EELFDPNYLELIVNNLLSNAFKYTDNGKSITVTLKEENNWLILQVSDTGAGIPINKQGKV 1003

Query: 167  IVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      I    V  L   +  R+  E  +      S  L 
Sbjct: 1004 FERFYQIESQHIGSGIGLSLVQRLVDLHHGRIELESEEGKGSTFSVYLP 1052


>gi|91209737|ref|YP_539723.1| sensor protein KdpD [Escherichia coli UTI89]
 gi|237707335|ref|ZP_04537816.1| sensor protein KdpD [Escherichia sp. 3_2_53FAA]
 gi|91071311|gb|ABE06192.1| sensor protein KdpD [Escherichia coli UTI89]
 gi|226898545|gb|EEH84804.1| sensor protein KdpD [Escherichia sp. 3_2_53FAA]
          Length = 895

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 650 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 708

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 709 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 768

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 769 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 828

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 829 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 881


>gi|125973318|ref|YP_001037228.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|256006167|ref|ZP_05431083.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281417520|ref|ZP_06248540.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|125713543|gb|ABN52035.1| periplasmic sensor signal transduction histidine kinase
           [Clostridium thermocellum ATCC 27405]
 gi|255989870|gb|EEU00036.1| histidine kinase [Clostridium thermocellum DSM 2360]
 gi|281408922|gb|EFB39180.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum JW20]
 gi|316940450|gb|ADU74484.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium thermocellum DSM 1313]
          Length = 403

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/224 (10%), Positives = 63/224 (28%), Gaps = 23/224 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRLSSMSAIIRLKF 66
               A +     H++ +P+  I+++LE++ E        + + +  I+         +  
Sbjct: 176 EKQTAFIA-DASHELRTPLAVINSNLEIVMENENETVGSQMKWLGNIQSELERMKKLVDD 234

Query: 67  M----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           +           +   Y      +  + D    +    +++  +                
Sbjct: 235 LLFLARADAEDEMPKEYFDLSRLVHKIYDEFTPLCQKKSLEFLLDAKDNIVFYGNEFRIK 294

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           +++  L   A      GGK+ + ++   N    S+   G      E   +I D       
Sbjct: 295 QLITILLDNAIKFTGEGGKIILKLKVHANSIQLSVSDTGEGI-AKEHIDKIFDRFYRVDK 353

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       + +E+K  +            +  L 
Sbjct: 354 SRSRNHGGSGLGLAIAKCIVNEHKGTIDVFSEVSRGTEFTVSLP 397


>gi|330828889|ref|YP_004391841.1| Virulence sensor protein BvgS [Aeromonas veronii B565]
 gi|328804025|gb|AEB49224.1| Virulence sensor protein BvgS, putative [Aeromonas veronii B565]
          Length = 1414

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 56/221 (25%), Gaps = 24/221 (10%)

Query: 16   ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
            +L  + + H++ +PI  +H  LELL    + D+   L+R    SA               
Sbjct: 822  SLFLATMSHELRTPISGMHGMLELLRMSELNDDQRYLLRNVESSANHLLYLVNDILDFSK 881

Query: 64   ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                   +         V   +  G         + V  + +               +++
Sbjct: 882  IEAGQLHLNRQSCRLQPVVCDVIRGHAALAYSKGLKVTLQWEDQLPDLADIDPVRVGQVV 941

Query: 120  LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VE 173
             NL   A     +G            + + ++   G      EK  ++          + 
Sbjct: 942  SNLLNNAVKFTEQGAISIQVSCH-DQQLVIAVTDTGIGI-AEEKQAKLFTPFEQVESDIN 999

Query: 174  STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       L  +    L  +            + 
Sbjct: 1000 RRFGGTGLGLAICDQLVKKMGGTLTVKSQLGEGACFRFSIP 1040


>gi|327482523|gb|AEA85833.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           DSM 4166]
          Length = 1170

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/239 (9%), Positives = 67/239 (28%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS 59
           M +     L  +    +   + + H++ +P+ +     +LL +    +   + ++ +   
Sbjct: 477 MLEQRADELQRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPAGNLSEEQVQFARSI 536

Query: 60  AII-------RLKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRV 100
                         + ++    G ++    L  + ++            +E  ++    +
Sbjct: 537 YSAGNDLLTLINDILDISKVEAGKLEVHPELTILARLVDGMKSLFLPQAMEKALSFSVEL 596

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                       +   +IL NL   A     +G               F+++  G     
Sbjct: 597 ADDLPPTLFTDRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDGGMLAFAVRDTGIGIAP 656

Query: 161 PEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++       +  DG          +       LA+    ++  +         + +L 
Sbjct: 657 EQQAAIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLP 715


>gi|319745957|gb|EFV98240.1| sensor histidine kinase [Streptococcus agalactiae ATCC 13813]
          Length = 551

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 70/230 (30%), Gaps = 18/230 (7%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAII 62
           ++   L    L     + + H++ +P+  I    ELL       +E  Q        +  
Sbjct: 321 DVTDQLQMEQLQREFTANVSHELKTPLHVISGYSELLANQMVPNEEAPQFAAKIHKESER 380

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK----- 117
            +K +      +   +      +   + +    V + +Q     + I ++    +     
Sbjct: 381 LVKLVEDIINLSHLDEQEKLPQETVNLYDLTQKVLEGLQAKADKKHIQINFNGEEAILRG 440

Query: 118 -------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQI 167
                  ++ NL   A       G+V +++++S +     +   G      +    F + 
Sbjct: 441 NPVLLNSLVYNLCDNAITYNHEKGQVNVTLKNSSDTITLEVSDTGLGIAEKDKKRIFERF 500

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +   +  +    +    V      +   +  +        ++ LL K
Sbjct: 501 YRVDKSRSKIVGGTGLGLSIVKSALDFHNGSIKVDSHLGQGTTMTVLLHK 550


>gi|319790225|ref|YP_004151858.1| PAS/PAC sensor signal transduction histidine kinase [Thermovibrio
           ammonificans HB-1]
 gi|317114727|gb|ADU97217.1| PAS/PAC sensor signal transduction histidine kinase [Thermovibrio
           ammonificans HB-1]
          Length = 384

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 63/226 (27%), Gaps = 20/226 (8%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQLIRLSSMSAI 61
              +L     +   H++ +P+ A+  SLE L+E    +          ++ I        
Sbjct: 156 QYENLKKDFIANASHELKTPLAALKLSLEALEEECGNNPKASHFVKRALERITFMEQLIE 215

Query: 62  IR-------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                       + +       +  +  +            +  ++ V          + 
Sbjct: 216 DFLTLSRLDSTNLTVKLQEVELLPLVREILKGLSDFIVRKQLKVKLSVPQEAAVYADEKM 275

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD-- 169
              +L NL   A      GG++ IS ++   E   S+   G        P  F +     
Sbjct: 276 LYAVLKNLIDNAIKYNRDGGEIEISFREHAKEVEISVCDTGYGIPKSHLPFIFERFYRVE 335

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +    +    V L   +   ++  E  +         L K
Sbjct: 336 RSRSRKLGGTGLGLSIVKLAVDKMGGKVEVETREGEGTCFRVYLPK 381


>gi|302870117|ref|YP_003838754.1| ATP-binding region ATPase domain-containing protein [Micromonospora
           aurantiaca ATCC 27029]
 gi|302572976|gb|ADL49178.1| ATP-binding region ATPase domain protein [Micromonospora aurantiaca
           ATCC 27029]
          Length = 426

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 61/240 (25%), Gaps = 36/240 (15%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL---------------DEVGIEDEVMQ 51
            S  L  +     + + H++ +PIGA+    E L               +++       +
Sbjct: 162 ESHRLARVRRDFVANVSHELKTPIGALQLLAEALVDATEPAADGAPDLSEDLVAARRFAE 221

Query: 52  LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            I+  S      ++ +                 V     L ++           +     
Sbjct: 222 RIQHESTRLGRLVQELLELTRLQGAEPQPAPEPVSVDWVLAEVVDRTRTAATARRVEIAV 281

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                + +    +++   +      A         V ++V  ++     ++   G     
Sbjct: 282 GGQRGLTVYGSDSQLATAVANLVENAINYSGEDTTVRVTVTGTEEHVEIAVADQGIGIAP 341

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I +           +     +    V  +A  +  R+            +  L 
Sbjct: 342 NEV-DRIFERFYRADQARSRSTGGTGLGLAIVKHIASNHGGRVDVSSTLGGGSTFTLRLP 400


>gi|322420329|ref|YP_004199552.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320126716|gb|ADW14276.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 896

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAI 61
           +    +   M+ +  L   + HD  + +  I    +L ++ +G +D +   +     +  
Sbjct: 516 EQQYLHAQKMESIGTLAGGVAHDFNNILTVIGGLGQLTMERMGPDDPLRANMAGIMEATE 575

Query: 62  I-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---KRVQVSWTGEKIDL 111
                    L F R        VD    +  +   +   I  D   +++++      +  
Sbjct: 576 RASYLTRELLLFSRKQKSERRPVDLNQVVERMRSFLHRIIGEDITLRQLRLGVPLPILAD 635

Query: 112 SRERAKILLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKINGNL 157
           S    ++L+NL + A  ++P                       +      +  +   G  
Sbjct: 636 SNHLQQVLMNLAVNARDAMPEGGEFLLRTDRVQLCEEPAADGYRRPGAYALLRVSDTGTG 695

Query: 158 ARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +I +    +        +    V  +  +++  +  +         S  L 
Sbjct: 696 MDQATL-ARIFEPFFTTKETGKGTGLGLSVVYGIIKQHEGFVTVQSEPGKGSTFSIYLP 753


>gi|219848609|ref|YP_002463042.1| histidine kinase [Chloroflexus aggregans DSM 9485]
 gi|219542868|gb|ACL24606.1| histidine kinase [Chloroflexus aggregans DSM 9485]
          Length = 910

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 65/240 (27%), Gaps = 30/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------VGIEDEVMQLIR 54
           A++     S     +   + + H++ +P+ AI    +LL++         +  +V ++  
Sbjct: 385 ARDAAEAASRAK--STFLATMSHELRTPLTAIIGYSQLLEQLVDKGIYETVAHDVRRIRA 442

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD-----------SLIGLGDIEQVIEDFIAVDKRVQVS 103
             +    +    + ++    G +                +  +   +E      +     
Sbjct: 443 AGNHLLTLINDILDISKIEAGRMTISVEYADVADLVRDAVNTVLPQMEKNHNRLQLHCPP 502

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLARF 160
             G     + +  + L+NL   A      G       +          F++   G     
Sbjct: 503 DIGMLNSDATKVRQALINLLSNAAKFTENGTVTLTVTRYEDEGRLWFRFTVADTGIGI-P 561

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           P+K  ++                   +       L      R+  +       V +  + 
Sbjct: 562 PDKLDKLFKAFSQIDDSPTRKYGGTGLGLALSQRLCELVGGRITVQSTVGVGSVFTIEVP 621


>gi|218555953|ref|YP_002388866.1| osmolarity sensor protein [Escherichia coli IAI1]
 gi|218362721|emb|CAR00347.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli IAI1]
          Length = 450

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQCKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|163848652|ref|YP_001636696.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526588|ref|YP_002571059.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
 gi|163669941|gb|ABY36307.1| PAS sensor protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450467|gb|ACM54733.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
          Length = 915

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 57/237 (24%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK            A L + I H++ +P+ A+  S ELL    +      LI    +   
Sbjct: 407 AKEAAERTERAQ-AAFLSA-ISHEMRTPLNAVIASAELLLTDTLTPSQRSLIETIRIGGE 464

Query: 62  IR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
                                      D    +  +  + +          +  +     
Sbjct: 465 ALLALVNNVLDLSKIEAGRVEIAAEPTDVRAIVHAVLNLFKREADQKGLLIEAVIDPHLP 524

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARFP 161
              +       ++L+NL   A     R         I +     +   +++  G      
Sbjct: 525 ALIVSDPARLRQMLMNLVSNAIRFTDRGGVLITASVIGMATDHPQVEIAVRDTGTGISAQ 584

Query: 162 EKFTQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++       N     ++      +       LAH     L            +  L 
Sbjct: 585 QRSHLFQPFNHVDNDQTRQSGAGLGLAISAQLAHLMGGELTVAGQPGQGSTFTVTLP 641


>gi|220925375|ref|YP_002500677.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219949982|gb|ACL60374.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 890

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 74/233 (31%), Gaps = 29/233 (12%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            M++V  L   I HD  + + AI    +LL      V    + +  I+ ++  A   ++ 
Sbjct: 486 KMEMVGQLAGGIAHDFNNVLQAIIGYSDLLLASHRPVDPAFQDIMQIKQNANRAASLVRQ 545

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-------ERAKIL 119
           +            +I LGD    +   +      +V    +             +  +++
Sbjct: 546 LLAFSRRQTLRPEVIHLGDALSDLTLLLKRLLGERVELDLKHGRDLWPVKADVNQFEQVI 605

Query: 120 LNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLKINGNLARFPEKF 164
           +NL + A  ++P GG++ +   +                 +  +  +   G     PE  
Sbjct: 606 VNLAVNARDAMPNGGRLALRTANVTAEAAGALQLTGLPAADYVLVEVADTGTGM-TPEIM 664

Query: 165 TQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +I +    +        +    V  +  ++   +  +       V    L +
Sbjct: 665 EKIFEPFFTTKEVNKGTGLGLSTVFGIVKQSGGYIDVKSTLGEGTVFGIYLPR 717


>gi|254244130|ref|ZP_04937452.1| hypothetical protein PA2G_04970 [Pseudomonas aeruginosa 2192]
 gi|126197508|gb|EAZ61571.1| hypothetical protein PA2G_04970 [Pseudomonas aeruginosa 2192]
          Length = 998

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+           +   + + H+I +P+  I    ELL E  + +   Q +R  + +  
Sbjct: 496 AKDQAEAADRAK--SRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGE 553

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSR 113
             L  +     +    ++      ++         V+       +               
Sbjct: 554 GLLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 613

Query: 114 ERA--------KILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFP 161
           +          ++L NL   A      G       +  +         S+  +G      
Sbjct: 614 DGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLVRSAGSERLRLSVADDGIGI-PE 672

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L      R+  E            +E
Sbjct: 673 EMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIE 731


>gi|219847057|ref|YP_002461490.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
 gi|219541316|gb|ACL23054.1| multi-sensor signal transduction histidine kinase [Chloroflexus
           aggregans DSM 9485]
          Length = 763

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 61/229 (26%), Gaps = 25/229 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKF 66
            +  L     + + H++ +P+ +I    ++L       +  EV + +     +++  ++ 
Sbjct: 522 HADRLKTTFLATVSHELRTPLTSIIGYTDVLRRGILGELSPEVQETLGYMRQASLNLMRQ 581

Query: 67  MRLAFGYTGSVD---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           +     ++                       +G +     +              +    
Sbjct: 582 INDILEFSRIEAGQLSIEIEPVEVGAIIQNVVGQMLPQARERDLTVNVTIPPDIPQIAAN 641

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
                ++L+NL   A       G + ISV+        ++K +G     PE   +I    
Sbjct: 642 IGRLEQVLINLLSNAIKFNRPQGWIEISVEPRGAWLRINVKDSGVGI-APEDQERIFAEF 700

Query: 172 VESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +            +       L       +          V    L 
Sbjct: 701 QRARSPNGERVHGVGLGLAICRRLITHMGGTIGVTSTPGEGSVFYCDLP 749


>gi|89519332|gb|ABD75809.1| hypothetical protein [uncultured bacterium]
          Length = 800

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 26/235 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIRL 55
                L    +   L S I HD+ +P+  +    E++        D    E+ + +++  
Sbjct: 549 TQEKRLEQ--MRDDLVSMIVHDLKNPLAGVIGFAEIMSVKMKKRDDMEDFENFLTKILYQ 606

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGE 107
           ++    +    + +     GS++    +          I QV       D  +       
Sbjct: 607 ANTLHEMVNNILEVHKMEDGSMELQKDVSNLQTIITNSIHQVEMSAKQKDISITTDLPDP 666

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +     ++  N+        P  G + ISV+   +E +  +   G         
Sbjct: 667 LPPVFVDHTKIVRLFANIMSNGIKYTPEQGNIHISVKVQDDEILTGISDTGKGIPLEYLE 726

Query: 165 TQIVDGNV-ESTIDSH----DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T        +           +  Y+  L+   +  ++  E              
Sbjct: 727 TIFDRFAQIDRKKQGKAASVGLGLYFCKLVVESHGGKIWAESELGKGSTFFFTFP 781


>gi|238792323|ref|ZP_04635957.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
 gi|238728249|gb|EEQ19769.1| PAS/PAC domain [Yersinia intermedia ATCC 29909]
          Length = 1521

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 57/241 (23%), Gaps = 31/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           A+      +      L  + + H++ +P+ AI   L LL   G++ +       S     
Sbjct: 759 ARETAEEANKAKSAFL--ANMSHELRTPMNAILGMLTLLRRTGLDRKQADYAVKSEAATR 816

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWT 105
                    L F ++  G          +  +           +    + V   +  +  
Sbjct: 817 TLLHLLNDILDFSKIESGKMALECIPFDIHVMLRDLAVILSSNLKVKKVEVLFDIDPALP 876

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFP 161
                 S    +IL NL   A               I+         F ++  G     P
Sbjct: 877 QFVEGDSMRLQQILTNLGGNALKFTELGEVVLFIKVITQDSHHVTLHFGVRDTGIGI-AP 935

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALL 213
           E    I  G                +               L  E       +   +  L
Sbjct: 936 ENQESIFSGFTQAEASTTRRFGGTGLGLVISQRFVALMGGTLALESQPGQGSLFHFTITL 995

Query: 214 E 214
            
Sbjct: 996 P 996


>gi|219670060|ref|YP_002460495.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
 gi|219540320|gb|ACL22059.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfitobacterium hafniense DCB-2]
          Length = 468

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/224 (10%), Positives = 65/224 (29%), Gaps = 25/224 (11%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ-----LIRLSSMSAIIRLKFM- 67
           L       + H++ +P+ +I   +E L +   E   ++     +I   ++     +  + 
Sbjct: 229 LRTEFVGNVSHELRTPLTSIKGFVETLLDGASEVPHLRERFLNIIHKETLRLQRLVDELL 288

Query: 68  ----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-A 116
                         G +   ++   +  + +   +   V+  +++     ++ +  +  +
Sbjct: 289 TLSRIENQRQDAGQGMSKVQEAYEKIRPVIEPYAEAKKVELEIKIPKDLPEVAMGIDLLS 348

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV---- 172
           ++LLNL   A     +G     +  D            G      +   +I +       
Sbjct: 349 QVLLNLMENAVKYTVKGKVWLHAFHDDGKIL-LEFGDTGCGIPKEDLP-RIFERFYRVDK 406

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V  +    K ++          V    L 
Sbjct: 407 ARSREQGGTGLGLSIVKHIVEGVKGKITVASEPGSGSVFICELP 450


>gi|327484386|gb|AEA78793.1| Sensor histidine kinase [Vibrio cholerae LMA3894-4]
          Length = 734

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 341 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 400

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 401 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 460

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 461 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 519

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 520 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 576


>gi|325103588|ref|YP_004273242.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
 gi|324972436|gb|ADY51420.1| integral membrane sensor hybrid histidine kinase [Pedobacter
           saltans DSM 12145]
          Length = 715

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 64/231 (27%), Gaps = 22/231 (9%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-- 63
              +    +     + + H+I +P+ +I    E L++  +  E  + +     ++ I   
Sbjct: 333 EVAIRQTKIKTDFLAHMSHEIRTPLNSILGFSEQLEKSDLSGEQRKQLVSVQSASQILLS 392

Query: 64  ------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                          + +         ++  +    ++  D   +D  V   +       
Sbjct: 393 IVNDILDLSKLETGKLNIQSFPFFPRKTIEDIVSTLKIHADKKHLDLLVNYHFDQHIQLN 452

Query: 112 --SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA------RFPEK 163
                  ++++NL   A      G     +  +        +   G            ++
Sbjct: 453 GDEYRLKQVVINLVTNAIKFTKSGSVTINAAINEHCVMRIEVVDTGIGIDKENLKMVFDE 512

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           FTQI++ +  +  +   +       +    +  +  E            + 
Sbjct: 513 FTQILNKSDNNRHNGTGLGLAICKKIIQSQRGFIEVESEIGKGSKFFFEIP 563


>gi|332653310|ref|ZP_08419055.1| sensory box histidine kinase PhoR1 [Ruminococcaceae bacterium D16]
 gi|332518456|gb|EGJ48059.1| sensory box histidine kinase PhoR1 [Ruminococcaceae bacterium D16]
          Length = 312

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 72/227 (31%), Gaps = 17/227 (7%)

Query: 6   CFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGI-------------EDEVMQ 51
             NL      ++ L S I H   +P+  +    +LL+E  +             + E +Q
Sbjct: 72  ARNLQEQKDQISALISDISHQTKTPVANLQLYAQLLEEQPLTPQGKDCAKAISVQAEKLQ 131

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
            +  + + A      + +       +  ++     +   + +        V   G+ +  
Sbjct: 132 NLIEALVKASRLETGILVLHPQNDELGPVVARAAAQYAPKAWDKEVSLTVVQGEGQAVFD 191

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIV 168
           ++   + L NL   A    P GG + + VQ+ +  +   +   G      E+     +  
Sbjct: 192 AKWTEEALCNLLDNAVKYTPSGGSIRVEVQNYELFSAIQVSDTGPGIPEQEQAEIFGRFC 251

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +     D   I  Y    +A      +  E +       S  L +
Sbjct: 252 RASGAYQQDGVGIGLYLTRQIAQHQGGYVKVESVLGKGSTFSLYLPR 298


>gi|304310910|ref|YP_003810508.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
 gi|301796643|emb|CBL44855.1| sensory transduction histidine kinase [gamma proteobacterium HdN1]
          Length = 1161

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/230 (10%), Positives = 55/230 (23%), Gaps = 23/230 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       +    +   + + H+I +P+  +    ELL E  ++ +    +     S +
Sbjct: 644 QREREAAEQATQAKSAFLATMSHEIRTPMNGVIGMTELLRETPLDLQQTGYVNTIHNSGM 703

Query: 62  IRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWT 105
             +  +     Y+            S+D +  + +   V               +     
Sbjct: 704 ALVSLINDILDYSKIESGKLEVESISLDLMALIDECAAVFAQQSISKNLGLYVDIDPQIN 763

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              I       +ILLN    A      G     +   +       ++  G      E+  
Sbjct: 764 DRIISDPARIRQILLNFLSNAFKFTETGSVRIRADSLADGRIRIGVRDTGIGL-SQEQQE 822

Query: 166 QIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           ++                   +       LA      +            
Sbjct: 823 KLFQSFSQAEVSTTRKYGGTGLGLAISKRLAELMGGEVGVISESGKGSEF 872


>gi|300996531|ref|ZP_07181461.1| histidine kinase KdpD [Escherichia coli MS 200-1]
 gi|300304505|gb|EFJ59025.1| histidine kinase KdpD [Escherichia coli MS 200-1]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|315503606|ref|YP_004082493.1| histidine kinase [Micromonospora sp. L5]
 gi|315410225|gb|ADU08342.1| histidine kinase [Micromonospora sp. L5]
          Length = 426

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 61/240 (25%), Gaps = 36/240 (15%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL---------------DEVGIEDEVMQ 51
            S  L  +     + + H++ +PIGA+    E L               +++       +
Sbjct: 162 ESHRLARVRRDFVANVSHELKTPIGALQLLAEALVDATEPAADGAPDLSEDLVAARRFAE 221

Query: 52  LIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            I+  S      ++ +                 V     L ++           +     
Sbjct: 222 RIQHESTRLGRLVQELLELTRLQGAEPQPAPEPVSVDWVLAEVVDRTRTAATARRVEIAV 281

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                + +    +++   +      A         V ++V  ++     ++   G     
Sbjct: 282 GGQRGLTVYGSDSQLATAVANLVENAINYSGEDTTVRVTVTGTEEHVEIAVADQGIGIAP 341

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   +I +           +     +    V  +A  +  R+            +  L 
Sbjct: 342 NEV-DRIFERFYRADQARSRSTGGTGLGLAIVKHIASNHGGRVDVSSTLGGGSTFTLRLP 400


>gi|258624915|ref|ZP_05719842.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
 gi|258582771|gb|EEW07593.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM603]
          Length = 1171

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++    L +++      + + H++ +PI A+   +E+L      +E   L+  +  SA
Sbjct: 632 LRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSNESQLLLTNAITSA 691

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRER-- 115
                 +     ++      + L      + D +              G    +  +   
Sbjct: 692 ERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDFIVYWQPDA 751

Query: 116 -----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I+ NL   A     +G       Q  +    F +   G     P+  
Sbjct: 752 RLLVQVDALRLNQIITNLLSNALKFTEKGSIRICVEQS-EQHFTFEVTDTGCGMTEPQIA 810

Query: 165 TQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          ++        +    V  L       +  E   D    +   L 
Sbjct: 811 SIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRVSLP 865


>gi|229159652|ref|ZP_04287663.1| hypothetical protein bcere0009_4570 [Bacillus cereus R309803]
 gi|228623803|gb|EEK80618.1| hypothetical protein bcere0009_4570 [Bacillus cereus R309803]
          Length = 396

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 63/219 (28%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 174 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKVMDISTISKECRRLSKLVSNLLLLA 233

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +     G    L  + +  + I  +      ++V      +       ++++
Sbjct: 234 RSDSNQIEMDKKTFGLDKLLEEIVEPYKEIASYQEKAMILKVERDISFMGDRERIHQMMV 293

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES-TI 176
            L   A      GG + I    +       +K +G   +  +    F +   G+      
Sbjct: 294 ILLDNAMKYTNEGGHIQIDCTQTSGSIRIQVKDDGIGVKEDDIPKLFDRFYQGDKARSKS 353

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++L E           +L K
Sbjct: 354 EGAGLGLSIANWIVEKHYGKILVESKWGEGTCFEVILPK 392


>gi|226355985|ref|YP_002785725.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226317975|gb|ACO45971.1| putative histidine kinase, classic; putative membrane protein
            [Deinococcus deserti VCD115]
          Length = 1112

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 57/231 (24%), Gaps = 19/231 (8%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
             +      ++ +L A     + HD+ +P+  +    +LL +             + +I  
Sbjct: 876  RRTRELEATARELEAF-SYSVSHDLRTPLRHVVGFADLLRKDLGDNLSPKSARYLSVISE 934

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLG-------DIEQVIEDFIAVDKRVQVSWTGEK 108
            +S      +  +             + +            +  D    + + ++      
Sbjct: 935  ASTRMSQLIDDLLAFSRMGRQELRNVPVDLTSLIRASWHGLEPDRQGREIQFRLDELPTV 994

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPE---K 163
                     +  NL   A        +  I V       +    ++ NG           
Sbjct: 995  PGDPALLGLVFTNLLSNAIKYTRTRPQAIIDVTGLVQDGQVTVQVRDNGVGFDMRYADKL 1054

Query: 164  FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F      +     +   I    V  +   +   +  +   D     +  L 
Sbjct: 1055 FGVFQRLHRAEEFEGIGIGLANVRRIVTRHGGGVTADSQPDQGATFTVTLP 1105


>gi|220913613|ref|YP_002488922.1| histidine kinase [Arthrobacter chlorophenolicus A6]
 gi|219860491|gb|ACL40833.1| histidine kinase [Arthrobacter chlorophenolicus A6]
          Length = 516

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 55/215 (25%), Gaps = 23/215 (10%)

Query: 23  CHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMSAIIRLKFM-------RLAFGY 73
            H++ +P+  I   L+LL   +     E   L+          +  +       R  F  
Sbjct: 294 SHELRTPLTIIGGHLQLLQPADAMDVAETRVLLLEEVDRMQSLVNELLVLARSGRPDFVR 353

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG 133
              +D+   L    + I        +++    G          + +  L   A  S   G
Sbjct: 354 PDWIDTDSFLEAAMERIRVLGDRHWQIEQLPGGWFRADRNRLTQAIEQLAANAVHSTEPG 413

Query: 134 GKVTISVQD-----------SKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSH 179
             ++I                +      +   G      +    F +     V   ++  
Sbjct: 414 DIISIGAAWVTAKDSASEQQHEPTIDIWVADTGCGISAADQERIFDRFARAGVSRGVEGS 473

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +A  +   +      +        L 
Sbjct: 474 GLGLPIVKAIAEAHGGSVRLSSRVNVGSRFVLSLP 508


>gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 974

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/236 (10%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRL 55
           +     L  +D L     +   H++ +P+  I    E L +         +   + ++  
Sbjct: 304 EQQNAALQRLDQLKDEFLANTSHELRTPLNGIIGITESLIDGAAGSLSPVQIANLAMVVS 363

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTG 106
           S       +  +             +  SVD       +  +    I      +      
Sbjct: 364 SGKRLNSLINDILDFAKLKNHDIELHRKSVDFRQITEVVLTLSRPLIQGKSLELNNEIPA 423

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLARFPEKF 164
           +   +  +  ++   ++ +   ++      +I+V     +N    ++   G     P+KF
Sbjct: 424 DFPGIDGDENRLQQIMYNLVGNAIKFTESGSITVSATQQQNMAEVTVADTGIGI-SPDKF 482

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I                   +       L   +  R+  E            L 
Sbjct: 483 EDIFKSFEQLNASVSYPSRGTGLGLSITKQLIELHGGRIRVESEVGQGSRFIFTLP 538


>gi|170754637|ref|YP_001781899.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
 gi|169119849|gb|ACA43685.1| sensor histidine kinase [Clostridium botulinum B1 str. Okra]
          Length = 303

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 63/219 (28%), Gaps = 21/219 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           + S I HDI +P+ A+   ++LL +  I  E  +            LK +   F     +
Sbjct: 82  MISNISHDIRTPLTALMGYVDLLSDNSITKEKKEEYISIIRERGTALKDLMEEFFQMAKL 141

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQV----------------SWTGEKIDLSRERAKILLN 121
           +       IE+     +     +                        +      ++I+ N
Sbjct: 142 ECNDVEITIEKFNISEVVRKNIITFMNEINERNITPEINIGDEEIFALGDKNYTSRIITN 201

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   +      G  + I +++       S+   G      E    F ++  G        
Sbjct: 202 LISNSLKYGYEGKVIGIDLKEDNKWVTLSIWDKGKGIDKNELPYIFDRLYTGEKSRNRSF 261

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    V  +A      +  + I     + +  + K
Sbjct: 262 QGSGLGLSIVKNMAQHMNGSITAQSIPYEKTIFTIKIPK 300


>gi|218528120|ref|YP_002418936.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218520423|gb|ACK81008.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 810

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 72/245 (29%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS- 57
           + +     L S  L A+  L   I HD  + +  I  +L+LL +    +   ++   S+ 
Sbjct: 266 LQQAHAAMLRSQKLEAVGQLTGGIAHDFNNLLQVISGNLQLLSKDFAGNPRAEMRVQSAM 325

Query: 58  -------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                    A   L F R        V+    +  ++ ++   +  +  ++    G   +
Sbjct: 326 AGVARGAKLAAQLLAFARRQPLEPKVVNIGRLVQGMDDMLRRALGGEVEIETVVAGGLWN 385

Query: 111 LSRERAKILLNLFM---VAHASLPRGGK---------------VTISVQDSKNENIFSLK 152
              +  +I   +      A  ++   G+                           + ++ 
Sbjct: 386 TLVDPDQIENAVLNLAINARDAMDGHGRLTIEAGNAFLDDAYARGQDDVTPGQYVLLAVT 445

Query: 153 INGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G     PE   ++ +    +  +     +    V  L  ++   +      D    + 
Sbjct: 446 DTGVGI-PPEALERVFEPFFTTKPEDKGTGLGLAMVYGLVKQSGGHIKIYSEVDAGTTVK 504

Query: 211 ALLEK 215
             L +
Sbjct: 505 VYLPR 509


>gi|254229957|ref|ZP_04923359.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|151937526|gb|EDN56382.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 811

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      +S +      + + H+I +P+  +  + ++L +  + D+  + +R    S 
Sbjct: 344 LEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDDQRKHLRTLYDSG 403

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +     Y+      +   +    IE  I   K V  +                 
Sbjct: 404 DHMMTLLNEILDYSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLRFGVVSHLPT 463

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFP 161
                +      ++L NL   A     R     ++T     +  + I ++K  G      
Sbjct: 464 GRWYNNDKARLRQVLFNLLNNAVKFTDRGIVEVELTEKSSKAGTKLILAVKDTGIGI-SQ 522

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   +I                   +    V  +A      ++ +  ++     +  +
Sbjct: 523 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVGTTFTVEI 580


>gi|149174846|ref|ZP_01853470.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
 gi|148846183|gb|EDL60522.1| sensory transduction histidine kinase [Planctomyces maris DSM 8797]
          Length = 788

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 73/242 (30%), Gaps = 31/242 (12%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++       +  + +     + + H+I +P+ AI    E++ +   + E+ + I   
Sbjct: 377 MVEDLVIAQQDAEKASHIKSSFLANMSHEIRTPMTAILGFAEIMKQRNDDPEMSRHIDTI 436

Query: 57  SMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             +                     + +   +   ++ L  +  + ++      +D  V++
Sbjct: 437 RKNGEYLLELINDILDVSKIEADKLEVEAIHCSLIELLDDVKTLMEIRAIDRGLDLSVKI 496

Query: 103 SWTGEKIDL--SRERAKILLNLFMVAHASLPRGGKVTIS----VQDSKNENIFSLKINGN 156
             +  +          +IL+NL   A     +G    I     +  ++    F +  +G 
Sbjct: 497 DGSIPRWIQSDPVRLRQILINLLSNAIKFTRQGHVQLIVTASSIDTNEPVIQFDVIDSGI 556

Query: 157 LARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E+ +++    +              +       L H     +       +    S
Sbjct: 557 GM-TDEQISRLFQPFMQADSSTTRQYGGTGLGLTICKRLTHILGGEISVNSEYGNGTTFS 615

Query: 211 AL 212
             
Sbjct: 616 VT 617


>gi|197117429|ref|YP_002137856.1| sensor histidine kinase response receiver, PAS/GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
 gi|197086789|gb|ACH38060.1| sensor histidine kinase response receiver, PAS and GAF
           domain-containing protein [Geobacter bemidjiensis Bem]
          Length = 798

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 18/233 (7%), Positives = 56/233 (24%), Gaps = 29/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS--------MSAI 61
             ++ V  L + + HD  + +  I    ++L +          +  +             
Sbjct: 388 QKIEAVGQLAAGVAHDFNNLLTPIIVYADMLQQYCPAGSTQARMVDAMSQAAQKAGDLTQ 447

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             L F R    +   +D    +     ++      +  + +  +     +  +R ++   
Sbjct: 448 KLLSFGRKQALHVELLDLNEVIASFRDILRATARDNVTIDLRLSPGAAKVQADRGQLEQV 507

Query: 122 LFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           L  +   +                  L         V    +  + +   +G      E 
Sbjct: 508 LLNLLLNAQDAIDGTGSICVETGHLILDDEFHRQHPVAKPGHYILLAFSDDGCGM-AEET 566

Query: 164 FTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +    +        +    V  +   +   +  +            L 
Sbjct: 567 LRHMYEPFFTTKETGRGTGLGLATVYGIVKRHGGCIDVKSRPGEGTRFGIYLP 619


>gi|153800379|ref|ZP_01954965.1| sensor histidine kinase [Vibrio cholerae MZO-3]
 gi|124124005|gb|EAY42748.1| sensor histidine kinase [Vibrio cholerae MZO-3]
          Length = 736

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578


>gi|121585863|ref|ZP_01675657.1| sensor histidine kinase [Vibrio cholerae 2740-80]
 gi|121550001|gb|EAX60019.1| sensor histidine kinase [Vibrio cholerae 2740-80]
          Length = 736

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578


>gi|114569266|ref|YP_755946.1| histidine kinase [Maricaulis maris MCS10]
 gi|114339728|gb|ABI65008.1| histidine kinase [Maricaulis maris MCS10]
          Length = 553

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 52/239 (21%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     L++    +   + + H+I +P+  +    +LL    ++ E  + +R+   S 
Sbjct: 147 LGRARLEALAASKAKSDFLATMSHEIRTPLNGVLGVTQLLQATTLDAEQAEFVRVIDDSG 206

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
            I L+ +      +      + L          +   + +                    
Sbjct: 207 KILLRLLNDILDLSKIEAGKMELEVTPFRPSTLVRDAQTLWSAQAREKGIAFSIEADCDE 266

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ----DSKNENIFSLKINGNLARF 160
             +         ++L NL          G              +N     +   G     
Sbjct: 267 DAQYEGDPVRIKQLLFNLISNGIKFTQSGSVAVRMQFLPLGRRRNVMRVEVVDTGCGIPD 326

Query: 161 PEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                                    +       LA      +               + 
Sbjct: 327 TALRELFSAFKQADVATNRLHGGTGLGLAICRRLAELMGGSVDVTSRPGEGSKFWFDIP 385


>gi|108758721|ref|YP_629189.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
 gi|108462601|gb|ABF87786.1| sensor histidine kinase [Myxococcus xanthus DK 1622]
          Length = 334

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 64/241 (26%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       L +  L+AL  + + + H+I +P+  I ++LE + +   + E +       +
Sbjct: 76  LRATQAQLLFADRLIALGRIAAGVGHEINNPLAFILSNLEYIHQELQQKEHLSEQDRQEV 135

Query: 59  SA----------------IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                    R     TG  D    +    ++    +    R+ V
Sbjct: 136 LEALAETRDGAERIRLIVRDLQTLSRAEDVGTGPSDLGSVVRTAAKMAMHELRHRARLVV 195

Query: 103 SWT--GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKING 155
                           ++ LNL + A  S+  G      V               ++  G
Sbjct: 196 ECEGLPPVQGNGARLGQVFLNLLLNAAQSIVPGEVEKNEVHIVACESKAGRVAVEVRDTG 255

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                PE   +I D    +        +       +       L  E       +    L
Sbjct: 256 CGI-SPEHRERIFDPFFTTKPLGVGTGLGLAVCHGIVTSLGGTLTVESAPVRGSIFRVTL 314

Query: 214 E 214
            
Sbjct: 315 P 315


>gi|107104081|ref|ZP_01367999.1| hypothetical protein PaerPA_01005154 [Pseudomonas aeruginosa PACS2]
          Length = 750

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+           +   + + H+I +P+  I    ELL E  + +   Q +R  + +  
Sbjct: 248 AKDQAEAADRAK--SRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGE 305

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQVSWTGEKIDLSR 113
             L  +     +    ++      ++         V+       +               
Sbjct: 306 GLLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 365

Query: 114 ERA--------KILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFP 161
           +          ++L NL   A      G       +  +         S+  +G      
Sbjct: 366 DGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLVRSAGSERLRLSVADDGIGI-PE 424

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L      R+  E            +E
Sbjct: 425 EMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIE 483


>gi|262394675|ref|YP_003286529.1| sensor histidine kinase [Vibrio sp. Ex25]
 gi|262338269|gb|ACY52064.1| sensor histidine kinase [Vibrio sp. Ex25]
          Length = 806

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 70/238 (29%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +      +S +      + + H+I +P+  +  + ++L +  + D+  + +R    S 
Sbjct: 339 LEQERIKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLTDDQRKHLRTLYDSG 398

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------------- 105
              +  +     Y+      +   +    IE  I   K V  +                 
Sbjct: 399 DHMMTLLNEILDYSKIEQGHVEFENTPFPIESIIGSIKSVYQTLCAEKGLRFGVVSHLPT 458

Query: 106 -GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFP 161
                +      ++L NL   A     R     ++T     +  + I ++K  G      
Sbjct: 459 GRWYNNDKARLRQVLFNLLNNAVKFTDRGIVEVELTEKSSKAGTKLILAVKDTGIGI-SQ 517

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           E   +I                   +    V  +A      ++ +  ++     +  +
Sbjct: 518 EAQKRIFRPFEQAESSTTRRFGGTGLGLAIVKEIAEHMGGHVIVQSQENVGTTFTVEI 575


>gi|255745407|ref|ZP_05419356.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262149050|ref|ZP_06028193.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
 gi|262169820|ref|ZP_06037511.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|255737237|gb|EET92633.1| sensor histidine kinase [Vibrio cholera CIRS 101]
 gi|262022054|gb|EEY40764.1| sensor histidine kinase [Vibrio cholerae RC27]
 gi|262031150|gb|EEY49771.1| sensor histidine kinase [Vibrio cholerae INDRE 91/1]
          Length = 734

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 341 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 400

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 401 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 460

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 461 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 519

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 520 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 576


>gi|24215808|ref|NP_713289.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24196998|gb|AAN50307.1| histidine kinase sensor protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 870

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 67/231 (29%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-------QLIR 54
            +       S  L  ++ + + H++ +P+ +I  ++  L E  IE+          ++  
Sbjct: 636 TRTRYLANQSERLYTIIFNSLSHELKTPLSSIRGAVTALLEPEIENSREARVELLNEINE 695

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE------DFIAVDKRVQVSWTGEK 108
            S +  ++    + ++   +G +   +   D   +I            +    +      
Sbjct: 696 SSMILNLLLGNLLDMSRYESGFLKLRMDWHDPSDLIHVVVRRLRQTVKNSHCVIHLPENP 755

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     + L N+   A    P G  V I +   K++  + ++  G      +   
Sbjct: 756 VPTWMDFTLMEQALFNVVFNAVQISPEGTPVFIELICRKDKIQYIVEDEGPGIPKEDLEK 815

Query: 166 QI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +         +       +   +   L  E            + 
Sbjct: 816 IFEKFYRSKNRNHVGSGLGLSISKSIVETHGGTLTAENRTIVGARFCIEIP 866


>gi|15641833|ref|NP_231465.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|147674034|ref|YP_001217367.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|153819807|ref|ZP_01972474.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|227081960|ref|YP_002810511.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|229508072|ref|ZP_04397577.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229511689|ref|ZP_04401168.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229518828|ref|ZP_04408271.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229607633|ref|YP_002878281.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254848917|ref|ZP_05238267.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|298498130|ref|ZP_07007937.1| sensor histidine kinase [Vibrio cholerae MAK 757]
 gi|9656358|gb|AAF94979.1| sensor histidine kinase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126509646|gb|EAZ72240.1| sensor histidine kinase [Vibrio cholerae NCTC 8457]
 gi|146315917|gb|ABQ20456.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|227009848|gb|ACP06060.1| sensor histidine kinase [Vibrio cholerae M66-2]
 gi|227013730|gb|ACP09940.1| sensor histidine kinase [Vibrio cholerae O395]
 gi|229343517|gb|EEO08492.1| sensor histidine kinase [Vibrio cholerae RC9]
 gi|229351654|gb|EEO16595.1| sensor histidine kinase [Vibrio cholerae B33]
 gi|229355577|gb|EEO20498.1| sensor histidine kinase [Vibrio cholerae BX 330286]
 gi|229370288|gb|ACQ60711.1| sensor histidine kinase [Vibrio cholerae MJ-1236]
 gi|254844622|gb|EET23036.1| sensor histidine kinase [Vibrio cholerae MO10]
 gi|297542463|gb|EFH78513.1| sensor histidine kinase [Vibrio cholerae MAK 757]
          Length = 736

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 26/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        +S    +   + + H+I +P+  +  + ++L +  +  +  Q +     S 
Sbjct: 343 LEAEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESG 402

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------VSW 104
              +  +     Y+        L      ++  I   K +                 ++ 
Sbjct: 403 EHMMSLLNEILDYSKIEQGKFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITD 462

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGNLARFP 161
                       +I+ NL   A      G           D +N  I  ++  G      
Sbjct: 463 GRWYYGDKARLRQIIFNLLSNAVKFTEAGFVAIGLSEESCDEENYLIIKVQDTGIGI-AQ 521

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           E   +I                   +    V  +A      +L +            
Sbjct: 522 ESLGRIFRPFEQAESHTTRRFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVR 578


>gi|81428826|ref|YP_395826.1| two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78610468|emb|CAI55518.1| Two-component system, sensor histidine kinase [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 478

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 60/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + ++        D      + + H++ +P+  +   LE L        + ++ + L++  
Sbjct: 236 LNESEAEIKRQEDRRRQFMADVAHEMRTPLTTVKGLLEGLAYDAIPEEMREKSISLMQNE 295

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I                ++L      +V++L  + +  Q           ++    
Sbjct: 296 TNRLIRLVNENLDYEKIRTNQIKLNQQTFNAVEALQNIQEQLQKKAADAGDTIVLEAQEE 355

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      +++ N+   A      G     +          ++   G      +   
Sbjct: 356 VAIYADYDRFVQVMFNIMQNAIQFTNNGQITVTAEAGFHETI-LTVSDTGIGMTSEQVKN 414

Query: 163 KFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +            +    V  L   +   +  +   D          
Sbjct: 415 IWERYYKADPSRKNTKYGESGLGLAIVHQLVQLHHGTIEVQSEPDQGTTFILTFP 469


>gi|1172485|sp|P45608|PHOR_KLEPN RecName: Full=Phosphate regulon sensor protein phoR
 gi|149296|gb|AAA25123.1| phosphate regulatory protein phoR (gtg start codon) [Klebsiella
           pneumoniae]
          Length = 431

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 66/214 (30%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQVLEGATREKALHTMREQTQRMEGLVKQLLTLSRIEA 268

Query: 80  LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   +++    +                     V    + +    +    + NL   
Sbjct: 269 APALAMNDRIDVPMMLRVVEREAQTLSQEKQTLIFTVDEQLKVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN--VESTIDSHD 180
           A    P G ++ +S Q +    +FS++ NG             +   G+           
Sbjct: 329 AVNHTPPGTEIRVSWQRTPQGALFSVEDNGPGIAPEHIPLLTERFYRGDKARSRQTGGSG 388

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    V    + +  RL  +         S LL 
Sbjct: 389 LGLAIVKHAVNHHDSRLEIDSTVGKGTRFSFLLP 422


>gi|332186402|ref|ZP_08388147.1| sensory box protein [Sphingomonas sp. S17]
 gi|332013770|gb|EGI55830.1| sensory box protein [Sphingomonas sp. S17]
          Length = 506

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 61/239 (25%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE-------------VGI 45
           M +     +    + A+  + S + H++  P+ AI N LE   +                
Sbjct: 259 MKELQAELIHVSRVSAMGTMASTLAHELNQPLTAIANYLEAGRDLIDNDASDARPFLREA 318

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSW 104
            DE  +    +         F+          D    + +  ++          R+   +
Sbjct: 319 MDEAAREALRAGQIVRRLRDFVARGETEKAVHDLPAMIDEAARLGLLGATERGIRLFTHF 378

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLA 158
                 +  +R ++   L  +   +        R      +++        ++   G   
Sbjct: 379 DPTASRVLADRVQVQQVLVNLLRNAAEAVADGVRRDVTVTTLRREGGVIDIAVADTGPGI 438

Query: 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH----NVVLSALL 213
                  ++ D           +       +   +  R+  E   D       +    L
Sbjct: 439 DPA-IAPRLFDAFASGKEHGMGLGLSISRTIVEAHGGRIWAESRADEDGQRGTIFHFTL 496


>gi|322805226|emb|CBZ02790.1| sensor histidine kinase [Clostridium botulinum H04402 065]
          Length = 342

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 74/236 (31%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K +++ +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLEQKYYLDEQIRQTILLFEYQWTKKNITLDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     D + +    V  +    +  +     +      +  L K
Sbjct: 287 KNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIEISSYEAVGTEFTVKLPK 342


>gi|266622772|ref|ZP_06115707.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
 gi|288865477|gb|EFC97775.1| putative response regulator receiver domain protein [Clostridium
           hathewayi DSM 13479]
          Length = 1116

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 67/246 (27%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQ-L 52
            + +   L S    ++      S + HDI +P+ AI          +D+     E ++ +
Sbjct: 583 RQALQSALESAKAASVAKSRFLSNMSHDIRTPMNAIMGMTAIAASHMDDQERVRECLRKI 642

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              SS    +    + ++   +G +       +  +++ +   + +    +   +     
Sbjct: 643 NLSSSHLLSLINDILDMSKIESGKISLRDEPFNFAELVAEVAELIRPQADAGHLDMNLSL 702

Query: 113 RE------------RAKILLNLFMVAHASLPRGGKVTISVQDSK------NENIFSLKIN 154
            +              +I  N+   A    P GG +++ +             IF     
Sbjct: 703 MDLKDELVAGDPLRVRQICFNVLSNAVKYTPEGGHISVRLYQRDSGRREYQNFIFECSDT 762

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G          ++            S +    +       +       +  E        
Sbjct: 763 GLGMSPEFL-DKLFLPFERVQDSTHSRVTGTGLGMAITKNIVDMMGGDIQVESELGEGSA 821

Query: 209 LSALLE 214
            +  L 
Sbjct: 822 FTVTLP 827


>gi|261212489|ref|ZP_05926774.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC341]
 gi|260838420|gb|EEX65076.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Vibrio sp. RC341]
          Length = 856

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
            ++      + +     A   +++ H++ +P+  +    +LL    + DE  + + +   
Sbjct: 464 KQSQVARREAEESARVRAEFLAKMSHELRTPLNGVLGVSQLLKRTSLTDEQREHVAVLCS 523

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------------V 102
           S    L  +     ++        +   E  +++ +    R+                 +
Sbjct: 524 SGEHLLAVLNDILDFSRLEQGKFRIQKNEFPLQELVCAIDRIYRPLCNDKGLQLIVNSNI 583

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
           + +           +IL NL   A     +G           +   + +  +   G   R
Sbjct: 584 TRSTMVRSDQIRINQILFNLLNNAIKFTHQGSVRVELELMVGDPLAQLVIQVIDTGIGIR 643

Query: 160 FPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +    I +  +              +    V  L      +L               L
Sbjct: 644 EQDL-AVIFEPFMQAESTTTREYGGSGLGLTIVHSLVEMLSGQLHVSSEYGVGTRFEIQL 702

Query: 214 E 214
            
Sbjct: 703 P 703


>gi|110597466|ref|ZP_01385753.1| PAS:Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341010|gb|EAT59481.1| PAS:Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 705

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 62/241 (25%), Gaps = 28/241 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
           + +      M+L+  L   I HD  + +G I  ++EL       D+ +Q           
Sbjct: 322 QEVLLQAQKMELIGQLAGGIAHDFNNMLGVILGNVELAMLHPALDQSLQNNLKMILKAVE 381

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            S+      L F R        +D    +  +  ++   +     +          +  +
Sbjct: 382 RSAELTTQLLAFSRKQAVMPVVLDLNTMVERMLSMLRGLVGDQITLVWIPESHNTPVKID 441

Query: 115 RAKILLNLFM---VAHASL----------------PRGGKVTISVQDSKNENIFSLKING 155
             +I L L      A  ++                 +        +      +  L   G
Sbjct: 442 PVQIDLILGNLTVNARDAITGSGKISIETRNISVDKQACAAGHPCKLPGEYVMLVLTDTG 501

Query: 156 NLARFPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +                   +    V  +  +NK  +  +         +  L 
Sbjct: 502 SGIAKKDLPHIFEPFFTTKEKDQGAGMGLSTVYGIIKQNKGFIDCQSEPGQGTAFNIYLP 561

Query: 215 K 215
           K
Sbjct: 562 K 562


>gi|51832259|gb|AAU10313.1| two-component histidine kinase [Alternaria brassicicola]
          Length = 1328

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 58/242 (23%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 727 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 786

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 787 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSSASRANERKLNLAYDVSY 846

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKING 155
                 +  S    +I+LNL   A                             F++   G
Sbjct: 847 KVPDYVVGDSFRLRQIILNLVGNAIKLTEPGEVKVAISMAQEQECDPDHYVFQFAVSDTG 906

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 907 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDAGKGSVFY 966

Query: 211 AL 212
             
Sbjct: 967 FT 968


>gi|59710703|ref|YP_203479.1| nitrogen regulation protein NR(II) [Vibrio fischeri ES114]
 gi|59478804|gb|AAW84591.1| nitrogen regulatory sensory histidine kinase in two-component
           regulatory system with NtrC [Vibrio fischeri ES114]
          Length = 352

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 68/234 (29%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +++ I  +        +L   + H+I +P+G +  + +LL+ +  E E+ +  ++    A
Sbjct: 120 LSQEINQHAQQQA-AKVLVRSLAHEIKNPLGGLRGAAQLLERMLPERELHEYTQIIIEQA 178

Query: 61  IIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +         G     +    +  + Q+IE   +   ++   +     D   + 
Sbjct: 179 DRLRNLVDRLLGPQKLGTKQPENLHAIIEKVRQLIELNSSYQVKIIRDYDPSLPDFDVDA 238

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   +  +   +                    +  I  Q  K      +  NG     
Sbjct: 239 EQIEQAILNIVSNAAEVLKDQPDGTITLKTRTDFQTNIYGQRHKLAAKIDIIDNGPGI-P 297

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V +      +       L  ++  ++          + +  L 
Sbjct: 298 SHIQDTLFYPMVSAREGGTGLGLSISQNLIDQHNGKIDVSSWPGK-TIFTIYLP 350


>gi|71908897|ref|YP_286484.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
 gi|71848518|gb|AAZ48014.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 856

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 64/233 (27%), Gaps = 21/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +          +   +R+ H++ +P+ AI     +L++                  
Sbjct: 480 LKRALIAADQGSQAKSEFLARMSHELRTPLNAILGFARVLEKDAASPLNDAQQEYVHHIL 539

Query: 61  IIRLKFMRLAFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDK---RVQVS 103
                 + L                     +D    L +   +I+   +  +   ++  S
Sbjct: 540 HGGQHLLGLINEILDLSAIESGKLKVEIEDIDLPSVLHECLALIKPLASNREITLKISGS 599

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            +       +   ++LLNL   A      GG+V +++  + +     +   G     PE 
Sbjct: 600 ESATVAADRKRLKQVLLNLLSNAIKYNRHGGEVQVNIGATPSGIRLDISDTGQGI-PPEL 658

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++            +   I       L       +  E   +        L
Sbjct: 659 AQRVFQPFDRLGLENSEGTGIGLAITRRLVELMGGSICFESTVNIGTTFRVEL 711


>gi|299831225|gb|ADJ55753.1| hypothetical protein [Clostridium sporogenes]
          Length = 616

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 26/239 (10%)

Query: 2   AKNICFNLSSM---DLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQL 52
            KNI     S     L+    S I H++ +P+  I  +++LL       +   ED+ ++L
Sbjct: 347 KKNIELLNESREYNKLITEFLSNISHELKTPLNVIFTAVQLLGFYEKDVDYEKEDKYLKL 406

Query: 53  IRLSSMSAIIRLKFMRLAFG----YTGSVDSLIGL-----GDIEQVIEDFIAVDKRVQVS 103
           I+ +    +  +  +         Y         +          V     + +  +   
Sbjct: 407 IKQNCYRLMKLINNLLDTTKLDSGYLKLNLVNYNIVSLIEEITLSVTSYAESKEINIIFD 466

Query: 104 WTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              E+  ++ +  KI   +      +      GG + ++V+DS+      +K  G     
Sbjct: 467 TNVEEKIIAVDPDKIERIILNLLSNSIKFTNPGGNIFVNVKDSEEYVYIHVKDTGVGIPS 526

Query: 161 PEKFTQIVDGNVESTI-----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +                +   I  + V      +K  +               L 
Sbjct: 527 DKLESIFERFFQIDKTLKKNKEGTGIGLHLVKSFVEMHKGEVTINSELGKGTEFIIKLP 585


>gi|298248012|ref|ZP_06971817.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
 gi|297550671|gb|EFH84537.1| integral membrane sensor signal transduction histidine kinase
           [Ktedonobacter racemifer DSM 44963]
          Length = 503

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 67/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL 55
           +A      +  ++          +   H++ +P+  I +  ++ L+E    +E +  +R 
Sbjct: 254 LALTFNEMIGRLEQAFTQQRRFVADASHELRTPVAVIRSFTDVALEEPRAFEECITALRE 313

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLI--------------GLGDIEQVIEDFIAVDKRVQ 101
            +  +      +        + +  +               + +  +++     +D +VQ
Sbjct: 314 INAESERLGHLINDLLSLARADEEQMPIEREPVRLDLLTLDVCETMELLAIERGIDLQVQ 373

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                     +    ++++ +   A      GGKVT+SV+         ++  G      
Sbjct: 374 KIAPATIQGDTVRLIQVIMGVVDNALTYTNAGGKVTLSVETHALVARLVVRDTGIGIAEQ 433

Query: 162 EKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +                       +       +   +   +  E         +  L 
Sbjct: 434 DIPHIFERFYRADPVGWRAARGSGLGLSIADWVVRAHGGSIDVESQVGRGTTFTITLP 491


>gi|294665048|ref|ZP_06730354.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292605166|gb|EFF48511.1| Two-component system sensor histidine kinase-response regulator
           hybrid protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 641

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/218 (10%), Positives = 59/218 (27%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII-----RLKFMRLAFGYT 74
           + + H++ +P+ AI     L+     +   +    +    +           + ++   +
Sbjct: 266 ATLSHELRTPLNAILGWSRLMQSDIADPANLGRGLVIIERSARAQTQIIDDLLDMSAILS 325

Query: 75  GSVDSLIGLGDIEQVIEDFIAVDKRV------------QVSWTGEKIDLSRERAKILLNL 122
           G +       DI  ++   + + +                         +    ++L NL
Sbjct: 326 GKIRLQAEHFDIAGLVRSALELMQPTALTRKIALELDAPCDGELWFFGDAGRLQQVLTNL 385

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTID 177
              A    P GG V +++          ++  G               +  D      + 
Sbjct: 386 LSNALKFTPAGGTVRVAMDVEDERLRLCVQDTGIGIAAEFLPHVFDRFRQADAGTTRRVG 445

Query: 178 SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              +       L   +   L      + H  + + +L 
Sbjct: 446 GLGLGLSISRQLVDLHGGSLGASSAGEGHGALFTIVLP 483


>gi|257062146|ref|YP_003140034.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8802]
 gi|256592312|gb|ACV03199.1| PAS/PAC sensor signal transduction histidine kinase [Cyanothece sp.
            PCC 8802]
          Length = 1166

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 63/234 (26%), Gaps = 22/234 (9%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQ 51
            M +     L++ +L +  C  + HD+ +P+  IH  +  L          E       + 
Sbjct: 927  MQRTTQLELANQELDSF-CYSVSHDLRAPLRHIHGFVNALKQQLMTNNTFEDPKVLHYLD 985

Query: 52   LIRLSSMSAIIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +I  SS      +  +              +VD    +     ++         ++    
Sbjct: 986  VIENSSQKMAHLIDGLLTLSRVGRRELVLHTVDLNAVVKTAINLLSPLENKTHTIKFEVG 1045

Query: 106  GEKIDLSRER--AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                         ++  NL   A         ++I +   ++     +  NG        
Sbjct: 1046 KLPTVQGDNALLQQVFTNLLDNALKFSRDRNPISIKINTLEDG-TIFVSDNGVGFDMEYA 1104

Query: 164  FT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      + ++T     I    V  + H +   +  E   D        L 
Sbjct: 1105 DQLFGAFQRLHSQATFPGTGIGLSIVQRIIHRHGGHIWAESQVDKGTTFYFTLP 1158


>gi|172041121|ref|YP_001800835.1| two-component system sensor kinase [Corynebacterium urealyticum DSM
           7109]
 gi|171852425|emb|CAQ05401.1| two-component system sensor kinase [Corynebacterium urealyticum DSM
           7109]
          Length = 388

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 60/218 (27%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
             + + H++ +PIGAI    E + +   + E +            RL  +         V
Sbjct: 152 FVANVSHELKTPIGAISLLAEAVTDYSDDPEAVHRFGGKIQKESTRLVHLVQEIIDLSQV 211

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK---------------ILLNL 122
               GL     +    +  +   +     E  +++   A+                + NL
Sbjct: 212 QDNEGLESSAVIEVSDVVEEAIDRARTNAESKNITMNVAQSPGLRVEGSFDLLAKAVRNL 271

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTI 176
              A        ++ IS +   N     +  +G      E   +I +             
Sbjct: 272 VDNAVNYSSADTEIGISTKRRANSVAVIVTDHGIGMSSKE-TDRIFERFYRVDKARSRNT 330

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +  ++  ++            + LL 
Sbjct: 331 GGTGLGLSIVKHIIAKHGGKIKVWSRPGEGSTFTVLLP 368


>gi|172035136|ref|YP_001801637.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
 gi|171696590|gb|ACB49571.1| two-component sensor histidine kinase [Cyanothece sp. ATCC 51142]
          Length = 835

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 62/240 (25%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           +A      +    L     + I H++ SP+ A+     LL E         +    QLI 
Sbjct: 322 LAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGDLNPRQVHYAQLIY 381

Query: 55  LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
            S    +  +  +                 V+           I +         + ++ 
Sbjct: 382 RSGRQLMTLVNDLLDLTRLETGQLKLSFSPVNIQEICHRAYHSIAEKYKGKSDKPLDFSL 441

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                  + +       ++L++L   A      GGK  + V   ++   F++   G    
Sbjct: 442 DIEVGLHQLLADELRLHQMLVHLLDNAMKFTQTGGKFGLKVSRWEDWLAFTVWDTGIGIP 501

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +                  +   +       LA  +   +            + LL 
Sbjct: 502 EESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAGQGSQFTLLLP 561


>gi|168046417|ref|XP_001775670.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
 gi|162672943|gb|EDQ59473.1| sensory histidine protein kinase [Physcomitrella patens subsp.
           patens]
          Length = 298

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/224 (9%), Positives = 60/224 (26%), Gaps = 25/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H++ +P+  +   L+LL    +  E    +R+   SA   ++ +     ++ 
Sbjct: 3   SQFLAMMSHELRTPMTGVLGMLDLLRLTPLTPEQAGFVRVMQGSAEGLMQVLNEILDFSR 62

Query: 76  SVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                          + +  R+                ++L
Sbjct: 63  IQSGHLSLNVVDFHIGELLDQVRNDACFTSARPGVEICSRLLCHDINVVTTRYVYGHQVL 122

Query: 120 LNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFP-EKFTQIVDGNV---- 172
            NL   A      G     +    +S ++  F +++         E+ +++         
Sbjct: 123 SNLVSNAIKFTEHGSIRDNTTTSTNSDSQVWFEVRVTDTGIGLTLEQQSRLFQSFSQGDS 182

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       L      R+  E         +  + 
Sbjct: 183 SATRKFGGTGLGLAISKGLVEVMGGRIWVESDFGKGSTFAFCVP 226


>gi|149181531|ref|ZP_01860026.1| histidine protein kinase [Bacillus sp. SG-1]
 gi|148850781|gb|EDL64936.1| histidine protein kinase [Bacillus sp. SG-1]
          Length = 385

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 59/219 (26%), Gaps = 16/219 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
             + ++  + S   H+  +P+ +I    +LL     E   + ++         R+     
Sbjct: 152 ERLTILGQMSSSFVHEFRNPLTSIIGFTKLLKNDYPELPYLDVMSHELDQLNYRISQFLH 211

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------QVSWTGEKIDLSRERAKILL 120
                              + E    +   +          +           E  ++ L
Sbjct: 212 VSRKEIIESKKEKFLVFSMLSELIEFLYPSIVDGDVQVKSHLETQVYIKGNKEELRQVFL 271

Query: 121 NLFMVAHASLPR-----GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           NL M +  +L +        +T +     +E    +  NG           I +    + 
Sbjct: 272 NLIMNSIDALEQVKGEKRITITCTFDYENDEIQVKVANNGPEISAKAL-DAIFEPFYTTK 330

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I  Y    L  +++  ++     +     +  + 
Sbjct: 331 ELGTGIGLYICRKLVEKHEGSIVCTSSPEE-TAFTVTIP 368


>gi|117925512|ref|YP_866129.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609268|gb|ABK44723.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1120

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 67/242 (27%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           + ++    L + +L        +   + + HDI +P+ A+   +ELL E  ++ E    +
Sbjct: 714 LKQSEQALLQAKELAESANRAKSDFLATMSHDIRTPMNAVLGMVELLGESSLDPEQSHYL 773

Query: 54  RLSSMSAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           ++   +    L  +      +          +D       +E V++          +   
Sbjct: 774 KIIRRAGSTLLSLINDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKASEKGLQLQ 833

Query: 106 GEKIDLSRER--------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                  ++R         +ILLNL   A     +G       Q    +  F +   G  
Sbjct: 834 THLHIPPQQRVRGDAQRLRQILLNLLGNAVKFTQQGSVSLTLQQQPDGQYSFQVADTGPG 893

Query: 158 ARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                +                      +       L    +  L  +    H  +    
Sbjct: 894 IAPHRQKIIFEPFVQEESGTHRHFGGSGLGLSICHKLVTAMRGTLWLKSQLGHGSIFYFT 953

Query: 213 LE 214
           L 
Sbjct: 954 LP 955


>gi|94501557|ref|ZP_01308075.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
 gi|94426375|gb|EAT11365.1| sensory transduction histidine kinase [Oceanobacter sp. RED65]
          Length = 737

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 19/234 (8%), Positives = 63/234 (26%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       +    ++  + + H++ +P+  +   L+L++    ++   + ++++S SA
Sbjct: 353 LEQARHAAEEANRAKSVFLASMSHELRTPMNGVLGMLQLMEGSVKQEVNKRRLQIASNSA 412

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF------------IAVDKRVQVSWTGEK 108
              L  +     ++      + L   E  + +                   + +    + 
Sbjct: 413 KNLLTILDDILDFSRIEAGKLVLDSTEFSMSELLSSLQELFNIEVEKKRSTIHIENLLQH 472

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                +  +I   L      A+     G  +  +      +   S++  G          
Sbjct: 473 DMYWGDEGRIRQMLINLIGNANKFTQNGQIIVRAQSGENRDLKLSVQDTGIGIPSDRLGQ 532

Query: 166 QIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   D +         +       L+      +            +  L 
Sbjct: 533 IFESFTQADSSTTRQYGGSGLGLTICKRLSELMNGTISVISEQGKGSEFTLHLP 586


>gi|83955441|ref|ZP_00964072.1| sensory box sensor histidine kianse/response regulator
           [Sulfitobacter sp. NAS-14.1]
 gi|83840085|gb|EAP79260.1| sensory box sensor histidine kianse/response regulator
           [Sulfitobacter sp. NAS-14.1]
          Length = 761

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 18/235 (7%), Positives = 59/235 (25%), Gaps = 31/235 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   + HD  + + AI    +LL    D    +   +  I  ++  A   
Sbjct: 384 QSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDPGDRDYSDLVQIDQNANRAAAL 443

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           +  +             + + D       ++   +     + +S       +  ++ ++ 
Sbjct: 444 VGQLLAFSRKQTLRPETVNMRDTLADLTHLLNRLVGETVTLTLSHDPILQPIRADKRQLE 503

Query: 120 LNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161
             L      A  ++P                                  +   G      
Sbjct: 504 QVLMNLIVNARDAMPMGGEIKVTTENTQLAEPLTRDRVTVPVGKYVTVQVADEGEGI-PQ 562

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++  ++ +    +    +   +       +  ++   +  +         +    
Sbjct: 563 DRLQKVFEPFYTTKRTGEGTGLGLSTAYGIVKQSGGYIFVDSTIGEGTTFTLYFP 617


>gi|147674561|ref|YP_001216911.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262169340|ref|ZP_06037032.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
 gi|146316444|gb|ABQ20983.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|227013266|gb|ACP09476.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O395]
 gi|262022153|gb|EEY40862.1| hypothetical protein VIJ_002565 [Vibrio cholerae RC27]
          Length = 1331

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|194333604|ref|YP_002015464.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
 gi|194311422|gb|ACF45817.1| multi-sensor signal transduction histidine kinase [Prosthecochloris
           aestuarii DSM 271]
          Length = 599

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/220 (9%), Positives = 61/220 (27%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF------ 66
             S + H++ +P+ +I    E L     D+       +++I   S      +        
Sbjct: 368 FVSSVSHELRTPLTSIKGYTETLLEGALDDREDAMNFLRIILQESEQLTALINDVLDLSK 427

Query: 67  --MRLAFGYTGSVDSLIGLGDIEQVIED-FIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                       V     +     +           +Q+   G+   +  ++  + + + 
Sbjct: 428 IESGRIEYKFTPVSIEDVVLKTVALFRRSLEKKSIDLQIQIPGDLPPVFADKDYLEIVVR 487

Query: 124 MVAHASLPRGG----KVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VES 174
            +   ++        ++ I    + +     ++ NG      +    F +    +     
Sbjct: 488 NLLDNAIKYVADDSGRIRIIAFPANDMVRLEVEDNGAGIPQKDLGRIFERFYRVDKARSR 547

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I    +    V  +   +K  +      +   V S  + 
Sbjct: 548 QIGGTGLGLSIVKHIVLSHKGNVEVRSRQNLGSVFSITIP 587


>gi|15641361|ref|NP_230993.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|153822062|ref|ZP_01974729.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229511262|ref|ZP_04400741.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229518380|ref|ZP_04407824.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229608072|ref|YP_002878720.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254848471|ref|ZP_05237821.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255745740|ref|ZP_05419688.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262158982|ref|ZP_06030094.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
 gi|9655841|gb|AAF94507.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae O1 biovar El Tor str. N16961]
 gi|126520395|gb|EAZ77618.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae B33]
 gi|229345095|gb|EEO10069.1| hypothetical protein VCC_002404 [Vibrio cholerae RC9]
 gi|229351227|gb|EEO16168.1| hypothetical protein VCE_002669 [Vibrio cholerae B33]
 gi|229370727|gb|ACQ61150.1| hypothetical protein VCD_002990 [Vibrio cholerae MJ-1236]
 gi|254844176|gb|EET22590.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae MO10]
 gi|255736815|gb|EET92212.1| hypothetical protein VCH_002101 [Vibrio cholera CIRS 101]
 gi|262029167|gb|EEY47819.1| hypothetical protein VIG_002222 [Vibrio cholerae INDRE 91/1]
          Length = 1331

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 586 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 645

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 646 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 705

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 706 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 765

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 766 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 825

Query: 209 LSA 211
              
Sbjct: 826 FEF 828


>gi|330878979|gb|EGH13128.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 908

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 74/236 (31%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    I D   +         
Sbjct: 458 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAIGDTHSENRNIRRALG 517

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 518 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIELNC 577

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I+   S+NE +F +  +G     
Sbjct: 578 TAAQGLVINADPERIFQVLSNLVGNAIKFTPKGGRININAVASENEVLFKVSDDGIGIPA 637

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  E   D   V S  L 
Sbjct: 638 EHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFTLP 693


>gi|320353526|ref|YP_004194865.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
 gi|320122028|gb|ADW17574.1| multi-sensor hybrid histidine kinase [Desulfobulbus propionicus DSM
           2032]
          Length = 930

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 53/223 (23%), Gaps = 28/223 (12%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-------FMRLAFG 72
           + I H+I +P+ AI     L        ++ + + +   S+ + +          ++  G
Sbjct: 447 ALISHEIRTPLNAIVGFSALARRTADGVQLREYVDILDQSSRLLMDLVNDVLDMSKVEAG 506

Query: 73  YTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                     L +   +++                  + +             +I  NL 
Sbjct: 507 QLQLESIPFNLPEAVDLLQWQFAPVAARKQLDFQVIREETLPPWIQGDPIRFRQIASNLL 566

Query: 124 MVAHASLPRGG-------KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD-----GN 171
             A      G        +      + +      ++  G      +  +           
Sbjct: 567 SNAMKFTESGCVLLRVTAQDQAPGVEGRCLVRLEVRDTGIGIEARQIASLFQPFQQLDPG 626

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        +    V  L    + R+            +  L 
Sbjct: 627 ISRKYGGTGLGLAIVHRLVELMQGRVEVASTPGTGSSFTVELP 669


>gi|301058203|ref|ZP_07199253.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
 gi|300447705|gb|EFK11420.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
           proteobacterium NaphS2]
          Length = 912

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 56/240 (23%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQL 52
            K++      +     L     S + H++ +P+ ++    E+L      +     +   +
Sbjct: 665 TKDLAAANERLKELDQLKNEFISTVSHELRTPLTSVRALAEILHSNPDLDADRYQKFTGI 724

Query: 53  IRLSSMSAIIRLKFM------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           I   S      +  +                           +    Q++ D       +
Sbjct: 725 IITESERLSRLIDDVLNFQKIKSGKTQWEFTETDMGEIIEDSVVSTGQLVHDNHIDLTLL 784

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-NIFSLKINGNLAR 159
                           ++++NL   A                 +      ++K NG    
Sbjct: 785 LPEEKVYASVDRDRLIQVMINLLSNAVKFCDTDQGRIEIGLSREQNLIRVTVKDNGIGIS 844

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++     +        +       +       +   +K ++  E            + 
Sbjct: 845 AADQEFIFEEFRQIKDSSKRKPFGTGVGLTISRHIIEAHKGKIWVESEPGRGAKFVFTIP 904


>gi|298376648|ref|ZP_06986603.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
 gi|298266526|gb|EFI08184.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_1_19]
          Length = 423

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/223 (10%), Positives = 58/223 (26%), Gaps = 21/223 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF--- 66
            +  +     + + H+I +P+ AI     L+ E     E  +   + + +  + LK    
Sbjct: 181 EADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETTNASEQREYFSIINKNCDLLLKQIND 240

Query: 67  -----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRE 114
                      +          D       ++ +            V+    +       
Sbjct: 241 ILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHR 300

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++LLNL   A     + G +++  +        S+   G      +    F + V  +
Sbjct: 301 VEQVLLNLLSNAIKFTSK-GFISLFYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLD 359

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      ++  +    +               L 
Sbjct: 360 DF--YQGAGLGLPICKMIVEQLGGEIGVRSELGKGSTFWFTLP 400


>gi|295690540|ref|YP_003594233.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295432443|gb|ADG11615.1| integral membrane sensor hybrid histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 695

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 71/246 (28%), Gaps = 34/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDE---VGIEDEVMQLIR 54
            K I   L  +  + A+  L   + HD  + + AI   L ELL          E +  IR
Sbjct: 300 QKQIELQLAQAQKMQAIGQLAGGVAHDFNNLLTAIQLRLDELLHRHPVGDPSYEGLNEIR 359

Query: 55  LSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + A   ++ +    R        +D    + + E ++   +  D ++   +  +   
Sbjct: 360 QTGVRAADLVRKLLAFSRKQTVQREVLDLGELISEFEVLLRRLLREDVKLITDYGRDLPQ 419

Query: 111 LSRERAKILLNLFMVAHAS--------------------LPRGGKVTISVQDSKNENIFS 150
           +  +++++   +  +A  +                                   +     
Sbjct: 420 VRADKSQLETAVMNLAVNARDAVRAAKGGGVVRIRTARLNRDEAIQLGFPAADGDCAFIE 479

Query: 151 LKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +  +G     P+   +I D    +    +   +    V  +  ++   +           
Sbjct: 480 VSDDGPGI-PPDVMGKIFDPFFTTKPVGEGTGLGLATVYGIVKQSDGWIHVHSRPGEGAA 538

Query: 209 LSALLE 214
               L 
Sbjct: 539 FRIFLP 544


>gi|262274200|ref|ZP_06052012.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
 gi|262222010|gb|EEY73323.1| hypothetical protein VHA_001176 [Grimontia hollisae CIP 101886]
          Length = 1343

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 56/234 (23%), Gaps = 25/234 (10%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
                 +        + + H+I +P+ AI     L     + D+    +     +    L
Sbjct: 586 KDQATEASKAKGEFLANMSHEIRTPMNAILGMSHLALLTDLNDKQRNYVGNIEKAGKSLL 645

Query: 65  KFMR----------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
             +                         V   I      +  E  + +   +  +   + 
Sbjct: 646 GIINDILDFSKIEAGKLSVEHVDFRFSEVLDNISNIISVKAKEKELELIFDIDPNLPDDL 705

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEKF 164
           +       +I++NL   +      G  +  + + +         F ++  G      +  
Sbjct: 706 VGDPLRLGQIIINLTGNSVKFTESGEIIIRARKVTDVNEIIEIQFDIEDTGIGMNEEQLG 765

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                    DG++        +              R+  E         S  +
Sbjct: 766 RLFQSFSQADGSITRKYGGTGLGLTISKSFVELMGGRIWVESQPGKGSTFSFTI 819


>gi|262196702|ref|YP_003267911.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
 gi|262080049|gb|ACY16018.1| PAS/PAC sensor hybrid histidine kinase [Haliangium ochraceum DSM
           14365]
          Length = 614

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 62/241 (25%), Gaps = 29/241 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------- 49
           + +       S  L  +  L + I H+I +P+  +  +LE L E   E            
Sbjct: 233 LRQAEESMRVSDRLTTVGTLAAGIVHEINNPLAYVMGNLEFLIEQVEEWSEGVADEYRSE 292

Query: 50  --------MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                                   F R       +V     L     +  + I    +++
Sbjct: 293 LLPALREARSGAVRMDRIVRDLRTFSRRDEDSVSAVSLSQVLDSSINIAMNEIRQRAKIE 352

Query: 102 VSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKIN 154
            S+              ++ LNL + A  ++PRG      +        +      +   
Sbjct: 353 RSYAQDVAVQANESRLGQVFLNLLINAAQAIPRGNSQQHCITVRTECPGEGRVAVEISDT 412

Query: 155 GNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     P+   +I D    +        +       +      R+    +          
Sbjct: 413 GAGM-SPQVLERIFDPFFTTKPVGVGTGLGLSICRSIVESMGGRIDVRSVLGEGTCFRIE 471

Query: 213 L 213
           L
Sbjct: 472 L 472


>gi|182415664|ref|YP_001820730.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
 gi|177842878|gb|ACB77130.1| response regulator receiver sensor signal transduction histidine
           kinase [Opitutus terrae PB90-1]
          Length = 378

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 58/216 (26%), Gaps = 25/216 (11%)

Query: 23  CHDIISPIGAIHNSLELLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
            HD+ +P+ +I    E L +     +  + + L++    ++   L  +            
Sbjct: 161 AHDLRNPLASIRGLAEFLRDGVVGPLSADQLDLVQTIHAASQSMLTMVNELLDVATIEAG 220

Query: 80  LIGLGDIEQVIEDFIAVDKRVQVSW---------------TGEKIDLSRERAKILLNLFM 124
            + +   +  + D I     +                            +  +++ NL  
Sbjct: 221 ELKIDPAQHNLGDLIEKAVYLANIDAAKKNTRIEITPPASPLYPSFDPAKMQQVVDNLLS 280

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTIDS 178
            A    P G ++T+ +     E  F +K  G      E+  ++                S
Sbjct: 281 NAVKYSPPGSRITVVLHGDGRECSFGVKDQGPGIPENER-DRLFKDFGRLSVKPTGGEKS 339

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +   +    +          L 
Sbjct: 340 TGLGLAICRKITEAHHGSITAANLPGGGCEFRVTLP 375


>gi|167628685|ref|YP_001679184.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
 gi|167591425|gb|ABZ83173.1| signal transduction histidine kinase [Heliobacterium modesticaldum
           Ice1]
          Length = 909

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 65/242 (26%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA+ I  ++  +       +   + + H+I +P+ AI    ELL E  +  E  + +R+ 
Sbjct: 371 MAEMIDDHVQELRRANEAKSDFLANMSHEIRTPMNAILGMTELLGETQLTPEQAEYVRIC 430

Query: 57  SMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRV 100
             +    L                        + +  +    +++              +
Sbjct: 431 RGAGDTLLYLINDILDLSKVESGRMELQLTQFNLVELVEKTAELMAVRAHKKGLELVCHI 490

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE-----NIFSLKING 155
                 + +       +IL+NL   A     RG  V    +D           F++   G
Sbjct: 491 FPGVPSQVVGDPGRLQQILINLMGNAVKFTERGEIVLQVERDPDQPGEAGAIRFAVSDTG 550

Query: 156 NLARFPE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 +    F +    +           +       L    K R+  E          
Sbjct: 551 IGIAADKKEVIFERFSQADSSTTRRYGGTGLGLTISRYLVEMMKGRIWVESELGKGSTFY 610

Query: 211 AL 212
             
Sbjct: 611 FT 612


>gi|70732514|ref|YP_262277.1| bacteriophytochrome histidine kinase [Pseudomonas fluorescens Pf-5]
 gi|68346813|gb|AAY94419.1| bacteriophytochrome histidine kinase [Pseudomonas fluorescens Pf-5]
          Length = 746

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 66/237 (27%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-------------VGIED 47
           +A+ +     ++     L + + HD+ +P+  I     ++ +                 D
Sbjct: 507 LARQVLREQQAVRARDELVAVVSHDLRNPMTVISMLCGMMQKAFSSDGPHTSRRISSAID 566

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRV 100
            + Q     +      L   ++  G        + +  + +             A+D   
Sbjct: 567 TMQQAASRMNNLLEDLLDTSKIEAGRYSIAPQPLDVSQMFEEAYSLLAPLALDKAIDISF 626

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+ GKV +       + +FS++ +G     
Sbjct: 627 HAEPDLRINADPERLFQVLSNLVGNAIKFTPKQGKVGVVAMSDGEQIVFSVRDSGEGIPT 686

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +            E   +   +  Y    + H +  ++               + +
Sbjct: 687 DQLPFIFDRYWTMKEGNPNGTGLGLYITQGIIHAHGGKIEAHSEVGKGSEFRFSVPR 743


>gi|30021311|ref|NP_832942.1| two component system histidine kinase [Bacillus cereus ATCC 14579]
 gi|29896865|gb|AAP10143.1| Two component system histidine kinase [Bacillus cereus ATCC 14579]
          Length = 457

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 62/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQL 52
           M + +  +  S        S   H++ +P   I +  E          +     + +++ 
Sbjct: 220 MFERLETSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILKQ 276

Query: 53  IRLSSMSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            R  S                     F      +    + +   ++    +++    +  
Sbjct: 277 SRKMSALISQLLLLARADQGNHNTFQFECINMSELTEIVVEELSLMVQENSIEITTNIEE 336

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
                       ++L+NL   A A     G V + +   +   I  +  NG         
Sbjct: 337 DLFIKADQTLMMRLLMNLLTNAIAYSKASGTVNMQLFRDETNIIGKVSDNGIGISEQHIT 396

Query: 164 -----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F ++      S I +  +    V  +   +   +  E         +  L 
Sbjct: 397 KIWDRFYRVDAARTSSNIGNTGLGLSMVKWIVELHGGEITVESKLGEGSTFTFKLP 452


>gi|154245353|ref|YP_001416311.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154159438|gb|ABS66654.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 484

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 62/222 (27%), Gaps = 26/222 (11%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            L + + H++ +P+ AI    ELL         +       R+   S    L  +     
Sbjct: 236 FLAA-MSHELRTPLNAILGFSELLATETGAPLDDARKADYARIIHESGQHLLGLVNDILD 294

Query: 73  YTGSVDSLIGLG------------DIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---RAK 117
            +        L               E V  D       V+  +      +  +     +
Sbjct: 295 LSRVEAGAYELEREGVDVAALVAGCAEMVAIDAGRAGVAVKTVFAPRLPAIDADRRAFKQ 354

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----V 172
           I+LNL   A    P GG+V +SV+         ++  G     PE   ++ +        
Sbjct: 355 IVLNLLSNAVKFTPEGGRVQVSVRSEGEAVAIRVRDTGPGM-RPEDVARLGEPFFQAGDC 413

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +    V  L   +      E        ++  L 
Sbjct: 414 TQRARGSGLGIAVVKGLVKLHGGDFRVESAPGRGTSVTVTLP 455


>gi|23013248|ref|ZP_00053166.1| COG0642: Signal transduction histidine kinase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 566

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 70/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIG-------AIHNSLELLDEVGIEDEVMQ 51
           + +     + S  + +L  L + I H+I +P+         I N L  +           
Sbjct: 318 LQETQVHLIQSEKMASLGQLVAGIAHEINNPLSFALSNVFTIENWLAAVMAEAAPCLAED 377

Query: 52  LIRLSSMSAII-----------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
            +     +                       F RL  G   +VD    +  +   +   +
Sbjct: 378 HLVKLDKARKRIADTGQGLERVRELVVKLRTFSRLDEGEFKTVDIKDAVESVLLFLRHKM 437

Query: 95  AVDKRVQVSW--TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
           +    V+ ++         + +  ++++N+   A  ++   G +T+           ++ 
Sbjct: 438 SDRIEVRRNYMADNMLACYAGQLNQVIMNVVANAVDAIEGKGTITVRTFRQDGMFAIAVA 497

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G+     E   +I D    +        +       +   +  R+           + 
Sbjct: 498 DTGSGI-PAEIRERIFDPFFTTKPVGQGTGLGLSISYGIIKSHDGRIEVSSDPGQGTEIR 556

Query: 211 ALLE 214
            L+ 
Sbjct: 557 ILIP 560


>gi|325959251|ref|YP_004290717.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
 gi|325330683|gb|ADZ09745.1| PAS/PAC sensor signal transduction histidine kinase
           [Methanobacterium sp. AL-21]
          Length = 800

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 67/231 (29%), Gaps = 19/231 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53
           + + +  +   ++  A + S   HD+  P+  + +  +LL        +   +D +  ++
Sbjct: 561 LIRKLEVSNKELEQFAYVAS---HDLQEPLRMVTSFTQLLAMKYKDKLDSDADDYIEFIV 617

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSWTGE 107
             S     +    +  +   T   +             +  +    +    ++       
Sbjct: 618 EGSHRMKDLIDDLLAYSRLNTEKTEYQFSDLNQLLDNVLLGMKNTIVEEGVQITRDELPT 677

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKF 164
               S +  ++  NL   +        K+ IS ++++ E I  +   G         + F
Sbjct: 678 VRCDSSQLGQVFQNLISNSIKFHKTNPKIHISAEETREEWIVGVSDEGIGIDPEHQQQIF 737

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +         I       +   +  ++  E    +       L K
Sbjct: 738 DVFKRLHSRKKYPGTGIGLSICKRVVERHNGKIWVESELGYGSSFYFTLPK 788


>gi|294506015|ref|YP_003570073.1| sensor histidine kinase [Salinibacter ruber M8]
 gi|294342343|emb|CBH23121.1| sensor histidine kinase [Salinibacter ruber M8]
          Length = 593

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 21/221 (9%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           L + + + + H+I +P+ +I    E+L++  +  +          S+    + +      
Sbjct: 359 LKSAMLANMSHEIRTPLTSITGFSEVLEQN-LSGQHGDFATKIRKSSERLQRTLESVLHL 417

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TGEKIDLSRERAKI 118
           +    S+  L   E  +   +                             I       +I
Sbjct: 418 SKLESSVHKLEREEVSLRAVVEDVTAALRDDLTEKSLALQTEIPDSPVSGISNEDALHRI 477

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVE 173
             NL   A    P GG V I + D        ++ +G               +     + 
Sbjct: 478 CRNLLENAIKFTPAGGCVGIRLLDEGRSATLEIEDSGIGMDPENVPGLFQAFRQESEGMA 537

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +    V  L  E    +  E         +  L 
Sbjct: 538 REYEGSGLGLSIVKRLTDELGGEVDVETEKGEGTCFAVTLP 578


>gi|260866559|ref|YP_003232961.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O111:H- str. 11128]
 gi|257762915|dbj|BAI34410.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O111:H- str. 11128]
 gi|323178338|gb|EFZ63916.1| phosphate regulon sensor kinase PhoR [Escherichia coli 1180]
          Length = 431

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 69/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+      +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWLRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|158335032|ref|YP_001516204.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
 gi|158305273|gb|ABW26890.1| two-component hybrid sensor and regulator histidine kinase
            [Acaryochloris marina MBIC11017]
          Length = 1514

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 18/241 (7%), Positives = 59/241 (24%), Gaps = 28/241 (11%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSS 57
             ++     ++    +   + + H++ +P+ AI   +E++         + E + +I  S 
Sbjct: 850  QQSKEAADAASQAKSDFLAHMSHELRTPLNAILGYVEIMQRDPQLGETQTEHLGIIGRSG 909

Query: 58   MSAIIRLK----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ---------VSW 104
               +  +       R+  G          L  +   ++D +    ++Q          + 
Sbjct: 910  EHLLSLINDVLEMSRIEAGQLALTQVSFDLYRLLDSLQDMLEAKAKLQGLQLYFERSATV 969

Query: 105  TGEKIDLSRERAKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKINGNL 157
                     +  ++L+NL                              +  F++   G  
Sbjct: 970  PQFVFADEGKLRQVLINLLGNGLNYTEKGQVLLQVDTPEQSGQPGRACQLTFAVMDTGPG 1029

Query: 158  ARFPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +  +                  +   +               +  +            +
Sbjct: 1030 IKASDVDQLFEAFTQTDSGYRAQEGTGLGLPISRRFVQLMGGDIEVDSTVGQGSTFRFTI 1089

Query: 214  E 214
             
Sbjct: 1090 P 1090


>gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
            CCY0110]
 gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
            CCY0110]
          Length = 1324

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQL------- 52
            +       + +L A     + HD+ +P+  I + +E L    +   +   ++        
Sbjct: 1090 RTAQLEAINEELEAF-SYSVSHDLQTPLRYISSFVERLQGKLDAHADASSLRYLSIINEA 1148

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---QVIEDFIAVDKRVQVSWTGEKI 109
               +       L+F R +          +     E   Q+  +         +    E  
Sbjct: 1149 TSQAHRMIEDLLEFSRGSNTQLRLTQVSMEQLVQEVRSQLKPEISDRLIEWHIEPLPEVQ 1208

Query: 110  DLSRERAKILLNLFMVAHASLPRGGKVTISV--QDSKNENIFSLKINGNLA---RFPEKF 164
               +    +  NL   A           I++  +   NE +F ++ NG           F
Sbjct: 1209 GDPQMLRLVWQNLMSNAVKYTCNCSTAIITISSRIDDNEIVFFVEDNGAGFDMKYQNRLF 1268

Query: 165  TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +     + +       +    V  + H +  R+  E   +        L K
Sbjct: 1269 SLFQRLHSQEQFAGTGVGLANVRRIIHRHGGRVWAESTVNQGARFYFSLPK 1319



 Score = 84.1 bits (206), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 13/128 (10%), Positives = 26/128 (20%), Gaps = 11/128 (8%)

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV------TISVQDSKNENIFSL 151
                  +           KI+LNL   A      G           + + +    +  +
Sbjct: 754 MVNCQPLSKLIWVDREMWEKIVLNLLSNAFKFTFEGEIRVSLREEEDNSKTNNKFAVLEV 813

Query: 152 KINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +  G      E                 + +   I    V  L   +   +         
Sbjct: 814 QDTGIGISSEELPHIFERFYQSKSHQGRSYEGSGIGLSLVAELVKLHGGTVEVSSQVGKG 873

Query: 207 VVLSALLE 214
              +  L 
Sbjct: 874 TTFTITLP 881


>gi|83815587|ref|YP_444323.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756981|gb|ABC45094.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
          Length = 650

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 59/221 (26%), Gaps = 21/221 (9%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY 73
           L + + + + H+I +P+ +I    E+L++  +  +          S+    + +      
Sbjct: 416 LKSAMLANMSHEIRTPLTSITGFSEVLEQN-LSGQHGDFATKIRKSSERLQRTLESVLHL 474

Query: 74  TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---------------TGEKIDLSRERAKI 118
           +    S+  L   E  +   +                             I       +I
Sbjct: 475 SKLESSVHKLEREEVSLRAVVEDVTAALRDDLTEKSLALQTEIPDSPVSGISNEDALHRI 534

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-----TQIVDGNVE 173
             NL   A    P GG V I + D        ++ +G               +     + 
Sbjct: 535 CRNLLENAIKFTPAGGCVGIRLLDEGRSATLEIEDSGIGMDPENVPGLFQAFRQESEGMA 594

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +   +    V  L  E    +  E         +  L 
Sbjct: 595 REYEGSGLGLSIVKRLTDELGGEVDVETEKGEGTCFAVTLP 635


>gi|15600175|ref|NP_253669.1| two-component sensor [Pseudomonas aeruginosa PAO1]
 gi|9951266|gb|AAG08367.1|AE004911_2 probable two-component sensor [Pseudomonas aeruginosa PAO1]
          Length = 998

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+           +   + + H+I +P+  I    ELL E  + +   Q +R  + +  
Sbjct: 496 AKDQAEAADRAK--SRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGE 553

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKI 109
             L  +     +    ++      ++             +         R+ +    +  
Sbjct: 554 GLLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 613

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKINGNLARFP 161
           D  R   + L  +      +  +  +        +             S+  +G      
Sbjct: 614 DGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARSAGSERLRLSVADDGIGI-PE 672

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L      R+  E            +E
Sbjct: 673 EMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIE 731


>gi|42524251|ref|NP_969631.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
 gi|39576459|emb|CAE80624.1| two-component hybrid sensor and regulator [Bdellovibrio
           bacteriovorus HD100]
          Length = 557

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 30/239 (12%)

Query: 4   NICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           ++   +  +          L+   + H++ +P+ +I    E+L E    D+  +L   + 
Sbjct: 167 DLQKRIEELKEANRSKDEFLMT--VSHELRTPLNSIMGWAEILLEASPGDKDARLGLETI 224

Query: 58  MSAII---------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                L    +       VD +    D  +++ D   +   +  
Sbjct: 225 ERNARNQTRIIEDLLDSSRILLGRFHMEKKPVDLVDVVTQAVDAVRLMADKKEIHIEIAK 284

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL---- 157
              T           +I+ NL + A        ++ ++V         S+K  G      
Sbjct: 285 GVTTAMIQGDFERLKQIVNNLLINAIKFSHAQSRIEVAVLRQGPSFTVSVKDEGVGMDAE 344

Query: 158 -ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                 +  +  DG+         +       L   ++  ++            S  + 
Sbjct: 345 FIPRAFERFRQADGSTTRKFGGLGLGLSISRHLVEAHQGTIVAHSAGLGKGSEFSFSIP 403


>gi|85710707|ref|ZP_01041771.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
 gi|85687885|gb|EAQ27890.1| sensory transduction histidine kinase [Erythrobacter sp. NAP1]
          Length = 609

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 59/234 (25%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N    ++     +   +++ H+I +P+  +    ELL    +  E  + + L   S  
Sbjct: 208 ARNEANAMAEAK--SSFLAKMSHEIRTPMNGVMGFAELLSRSDLSHEQARHVELIRESGK 265

Query: 62  IRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
                +                     +    +    Q+ E            +V  +  
Sbjct: 266 ALQTLLNDILDLSKIESGEFRVKEEPANISHLVKRTIQLFEPLAREKVIGLSSQVSDTLP 325

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
              +  +    ++L NL   A     RGG   I      +   F+++  G          
Sbjct: 326 QFAMLDALRLRQVLSNLVANAIRFTDRGGVSVIVEPS-PSGIAFTVRDTGTGIPEEMIEA 384

Query: 166 QIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    G   +      +       LA      L               L 
Sbjct: 385 IFDPFSQSDGGNSTRRGGTGLGLSISRQLAELMGGELDVISTVGLGSSFILTLP 438


>gi|332341762|gb|AEE55096.1| phosphate regulon sensor kinase PhoR [Escherichia coli UMNK88]
          Length = 431

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSIEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|332291681|ref|YP_004430290.1| integral membrane sensor signal transduction histidine kinase
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169767|gb|AEE19022.1| integral membrane sensor signal transduction histidine kinase
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 482

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 67/221 (30%), Gaps = 16/221 (7%)

Query: 10  SSMDLVA--LLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRL 64
            +    A   +  ++ H+I +P+  +  S++  +   +    +   ++   S        
Sbjct: 263 QNEREAAWREMAKQVAHEIKNPLTPMRLSVQSFERRFDPEDPEVHDKIKEYSKTLIQQID 322

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDF-----IAVDKRVQVSWTGEKIDLSRERAKIL 119
               +A  ++   D      +I  V         I  ++ +  S   E++  + +R +++
Sbjct: 323 TMSSIASAFSNFADMPAQQSEILNVPNIVKLSVDIFNERYIYFSSEKEELYANFDRTQLI 382

Query: 120 LNLFM---VAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQIVDGNVES 174
             +      A  +        I V   +   E   ++  NG      E   +I +    +
Sbjct: 383 RVVTNLVKNAVQATKTTEHPNIIVAVQELEKEVEITVTDNGIGI-SAENEVKIFEPKFTT 441

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +    V  +       +     +    V   +  K
Sbjct: 442 KSSGMGLGLAMVKNIMETYNGSITFTSQEGKGTVFKVVFPK 482


>gi|325962193|ref|YP_004240099.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323468280|gb|ADX71965.1| histidine kinase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 415

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 65/235 (27%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMS 59
           +A +      + ++     + + H++ +P+GAI    E L+    ++  ++   +     
Sbjct: 135 LADDRTEITRTEEIRNDFVANVSHELKTPVGAISLLAEALESSADDELAVRRFAKRMHKE 194

Query: 60  AIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           +      ++     +             VD    + +     +          +     +
Sbjct: 195 SGRLAALVQDIIELSRLQGASVIQQGGPVDVNAVIAEAVDRSQLPAESKNIRIIVGGRTE 254

Query: 109 IDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
             +  ++  ++  L      A    P   +V I V+        S+   G     PE   
Sbjct: 255 AKVFGDQDLLVTALRNLIDNAIRYSPENTRVGIGVRSRDGLVSISVTDQGEGL-SPEDQE 313

Query: 166 QIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ +                 +    V  +A  +   +            +  L 
Sbjct: 314 RVFERFYRVDAARSRHTGGTGLGLSIVKHVASNHGGEVTLWSQPGQGSTFTLRLP 368


>gi|302133086|ref|ZP_07259076.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 998

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    ++D   +         
Sbjct: 523 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRRALG 582

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 583 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIELNC 642

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I      ++ +F +  +G     
Sbjct: 643 TSAQGLVIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGIGIPA 702

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  +   D   V S  L 
Sbjct: 703 QHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTLP 758


>gi|260853620|ref|YP_003227511.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O26:H11 str. 11368]
 gi|257752269|dbj|BAI23771.1| sensory histidine kinase PhoR in two-component regulatory system
           with PhoB [Escherichia coli O26:H11 str. 11368]
 gi|323152133|gb|EFZ38426.1| phosphate regulon sensor kinase PhoR [Escherichia coli EPECa14]
          Length = 431

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 69/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+      +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWLRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|170076629|ref|YP_001733268.1| two-component sensor histidine kinase [Synechococcus sp. PCC 7002]
 gi|169887491|gb|ACB01199.1| two-component sensor histidine kinase [Synechococcus sp. PCC 7002]
          Length = 489

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 59/237 (24%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRL 55
           +A+     LS +             + H++ +P+  I   L+ LL       E  Q    
Sbjct: 231 LAQVFNEMLSRLSSAWDNQRQFVGNVSHELRTPLTIIEGYLQSLLRRGDGLSEYQQQAIA 290

Query: 56  SS--------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--- 104
           ++              L   R   G+       + L    + +        +  +     
Sbjct: 291 TAATETTHTIQMLQDLLDLARADGGHLYFRTQPVMLNTFLEEVSAMGQQINQRPIHLKTP 350

Query: 105 --TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
                         +++LNL   A         + I ++ +    +  +   G       
Sbjct: 351 PEDVVIRADQDRLQQVMLNLIDNALKYSAPDQAIEICLETASPMALIHIIDQGIGIALAH 410

Query: 160 FPEKFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +  +  + D   +       L      ++            +  L 
Sbjct: 411 QARIFERFYRVDETMTRSRDGTGLGLAIAKSLIEGMGGKISLRSQPHQGSCFTLKLP 467


>gi|168699668|ref|ZP_02731945.1| sensory box histidine kinase/response regulator [Gemmata
           obscuriglobus UQM 2246]
          Length = 964

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 67/242 (27%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIR 54
           + ++       M+ +  +   + HD  + + A+  +L L+     +          Q   
Sbjct: 572 LLEDQLRQAHKMEAIGQMAGGVAHDFNNLLTAVLGNLSLVRLGPDDPNGELVCAAEQAAT 631

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            ++      L + R        V+ L  L ++  ++   +     + V    +   +  +
Sbjct: 632 RAADLTRKLLGYARRNQLVFAPVEPLAALNEVVGLMRCTVGPRVGLTVDVPPDCPPVHAD 691

Query: 115 RA---KILLNLFMVAHASLPR-----------------GGKVTISVQDSKNENIFSLKIN 154
                + ++NL + A  ++P                                  F++   
Sbjct: 692 PTLLVQAIMNLGLNARDAMPDGGVVVFTARPVDLRPDDPVPAGWDDVPPGRYVRFTVADT 751

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E  T++ +    +        +    V  +  ++   +           +   
Sbjct: 752 GCGM-SDEVKTRLFEPFFTTKGIGKGTGLGLPMVHGIVKQHHGWIEVHSAPGTGTRMELN 810

Query: 213 LE 214
           L 
Sbjct: 811 LP 812


>gi|124008207|ref|ZP_01692904.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
 gi|123986306|gb|EAY26128.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
          Length = 463

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 67/240 (27%), Gaps = 26/240 (10%)

Query: 2   AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVM 50
            KN    L   +L  L      L S I HD+ SP+  +  +L LL         ++   +
Sbjct: 215 QKNEAIRLQQAELSDLSHFKDKLLSIISHDLKSPLNTLQGTLTLLGAGAITPEELQVLTL 274

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSV-------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +L      +  +    ++ A      V       +      D  +V+      +  +   
Sbjct: 275 ELRDKMQATRYLMENILQWAMMQMEKVKFTPELLNLHDITADTLKVLTATQNKNIELYND 334

Query: 104 WTGEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARF 160
              E    +       ++ NL   A     + G+V ++ Q         +++ NG     
Sbjct: 335 VPAETKVFADAHMVALVIRNLSANAIKFTQQDGEVRVTAQAMDKGYVEVAIQDNGVGIPP 394

Query: 161 P-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    T               +          +N+ ++  E            L +
Sbjct: 395 DVLPYLFDSTHTYTTEGTDDEKGTGLGLLLCQEFVEKNQGKIWAESTQGEGTTFKFTLPR 454


>gi|119510646|ref|ZP_01629775.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
 gi|119464697|gb|EAW45605.1| two-component sensor histidine kinase [Nodularia spumigena CCY9414]
          Length = 850

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 62/248 (25%), Gaps = 39/248 (15%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED----------EVMQ 51
            + +  + + ++  A + S   HD+  P+  + + L+LL+                  + 
Sbjct: 600 TQELARSNAELEQFAYVAS---HDLQEPLRMVTSYLQLLERKYKHQLDANAEQFITYAVD 656

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             R         L + R+       V+    +     +      +++   +        +
Sbjct: 657 GARRMQSLINDLLDYSRVTSRGQPIVEVDFNMIFERAIANLKFTIEESSAIITHDLLPIV 716

Query: 112 SRERAKILLNLFMVAHASLPRG---------------------GKVTISVQDSKNENIFS 150
             +  ++   L  +   ++                              +    NE +FS
Sbjct: 717 MADPTQLTQVLQNLIGNAIKFRGESPLKIHLGAVKAEQTQEQLPIPHSPLPTPPNEWLFS 776

Query: 151 LKINGNLARFPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +  NG          +I          S      I       +   +  R+  E      
Sbjct: 777 VSDNGIGIESQYA-ERIFVIFQRLHGRSKYPGTGIGLAICKKIIERHGGRIWVESKPGQG 835

Query: 207 VVLSALLE 214
                 + 
Sbjct: 836 STFYFTIP 843


>gi|146306761|ref|YP_001187226.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
 gi|145574962|gb|ABP84494.1| multi-sensor hybrid histidine kinase [Pseudomonas mendocina ymp]
          Length = 916

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 58/238 (24%), Gaps = 27/238 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               L +  + +   + + H+I +P+  I     LL +  +       +     SA   L
Sbjct: 274 RKEALEASRIKSEFLANMSHEIRTPLNGILGFTNLLQKSELSPRQQDYLATIEKSADSLL 333

Query: 65  KFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSWTGEK 108
             +     ++              +    L D   ++       +      +        
Sbjct: 334 GIINEVLDFSKIEAGKLVLESIPFNLRDLLQDTLTILAPAAHEKQLELISLIYRDTPLAL 393

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKF 164
                   ++L NL   A      G  V  ++ + ++    +   S+   G      +  
Sbjct: 394 RGDPLRLKQVLTNLVSNAIKFTREGTIVMRAMVEDESVDSAQLRISVMDTGIGLSDEDLR 453

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALLEK 215
                 +              +       L  +    +  +           S  L K
Sbjct: 454 ALFQAFSQADNSLSRQAGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLSLPK 511


>gi|160881991|ref|YP_001560959.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160430657|gb|ABX44220.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 513

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 67/239 (28%), Gaps = 24/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           + + I   +   +    L S I HD+ +P+ AI    E + +      E +     +  +
Sbjct: 251 LKELIEVKMQYDENSRELLSNISHDLKTPLTAIKGYSEGIIDGVADTPEKLDRYVKTIYT 310

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----------------RVQV 102
               +  +         +D+     +   +  D    D                     V
Sbjct: 311 KANDMSSLVDELSLYARIDNNTVPYNFNIIGIDDYFSDCVDELSFELEIKNIKLEYENMV 370

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFP 161
           S   + I  + +  +++ N+   A   + +          D+ +    S++ +G      
Sbjct: 371 SPECKVIIDTEQLKRVIHNIVGNAIKYMGKAEGTIRVRLSDAGDMVQVSIEDDGCGIAAK 430

Query: 162 E---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F +    +           +       +  E+   +  +        +   + K
Sbjct: 431 DLPNIFERFYRADASRNSKQGGSGLGLAIAKKVIEEHGGNIWAKSEVGVGTSIIFTIMK 489


>gi|94264445|ref|ZP_01288234.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455135|gb|EAT05357.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 1009

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 53/237 (22%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-- 58
           A+ +  +  + +L  +   + + H+I +P+  +     LL E  +  +  +         
Sbjct: 346 AEEMARDAQAANLAKSEFLANMSHEIRTPLNGVIGMTGLLLETELNSQQRRYAETMLYSG 405

Query: 59  -----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSW 104
                     L   ++        +    L          +AV                 
Sbjct: 406 ESLLSLINDILDLSKIEARQLELEEIEFDLAGTIDDFAATMAVRAHERGLELICLFSPGL 465

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
           +           ++L NL   +     +        +    +      F +   G     
Sbjct: 466 SPLVKGDCGRLRQVLANLVGNSIKFTEKGEVAIKVSSRDKDEENVLLSFEISDTGVGIPQ 525

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +  T     +              +       L       +     +    V S  
Sbjct: 526 EKLTTIFEKFSQVDASTTRKYGGTGLGLAITRQLVDLMGGEITVSSREGSGSVFSFT 582


>gi|297531202|ref|YP_003672477.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
 gi|297254454|gb|ADI27900.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. C56-T3]
          Length = 457

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/232 (9%), Positives = 62/232 (26%), Gaps = 23/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----------VGIEDEVM 50
           M + +  NL          S   H++ +P+  I +  +LL              IE   +
Sbjct: 220 MIERLQENLEKQK---RFVSDASHELKTPLTVIKSYADLLKRRGVQNEAMVQEAIETIYL 276

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +  R+  M+  +                  +       + +      + +++ ++   I 
Sbjct: 277 EATRMQKMAEALLDLAASEKESILEVEPVNLISALSHILRQLQTVYARPIRLHYSQNPIM 336

Query: 111 LSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
              +     ++++ L   A         V +  +  +   I  +K  G      +     
Sbjct: 337 AEVDELKMKQVMIILLDNAIKYSQDPIDVFLEQR--EKYVIIRIKDYGIGIPKEDIKHVF 394

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       +  +++  +  +        +  L+ 
Sbjct: 395 ERFYRVDKSRSRETGGTGLGLSIAQNIVRQHRGEIHIDSELGKGTEVKLLIP 446


>gi|218752416|ref|ZP_03531212.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis GM 1503]
 gi|289760885|ref|ZP_06520263.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis GM 1503]
 gi|289708391|gb|EFD72407.1| two component system response sensor kinase membrane associated
           phoR [Mycobacterium tuberculosis GM 1503]
          Length = 485

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/211 (13%), Positives = 57/211 (27%), Gaps = 18/211 (8%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIG 82
            H++ +P+  I    EL  +    D  M L R+ S ++ + L    L           + 
Sbjct: 258 SHELRTPLTTIRGFAELYRQGAARDVGMLLSRIESEASRMGLLVDDLLLLARLDAHRPLE 317

Query: 83  LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA-------------KILLNLFMVAHAS 129
           L  ++ +     A      +           +               ++L NL   A   
Sbjct: 318 LCRVDLLALASDAAHDARAMDPKRRITLEVLDGPGTPEVLGDESRLRQVLRNLVANAIQH 377

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--IDSHDIQFY 184
            P    VT+ V    ++ I  +  +G      +    F +    +           +   
Sbjct: 378 TPESADVTVRVGTEGDDGILEVADDGPGMSQEDALRVFERFYRADSSRARASGGTGLGLS 437

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            V  L   +   +               L +
Sbjct: 438 IVDSLVAAHGGAVTVTTALGEGCCFRVSLPR 468


>gi|218549738|ref|YP_002383529.1| sensor protein KdpD [Escherichia fergusonii ATCC 35469]
 gi|218357279|emb|CAQ89914.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein ; sensory histidine
           kinase [Escherichia fergusonii ATCC 35469]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHAHQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
              +  +     ++L+NL   A        ++ I            +  NG         
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGTQAEIGIDAHVEGENLQLDVWDNGPGLPQGLEQ 827

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 AIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|307155071|ref|YP_003890455.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985299|gb|ADN17180.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 1200

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 62/228 (27%), Gaps = 29/228 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           +   + I H+I +P+ AI    ELL  +  +   +  I+  S S                
Sbjct: 716 SQFIANISHEIRTPMNAILGFCELLLNIHNDPRTLSYIQSISSSGRTLLALINDILDLSK 775

Query: 64  --LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKIL 119
                + L +      + +I +  I         +    +       +         +IL
Sbjct: 776 IEAGKLELNYEPINLRELIIDVCQIFSTQAQTKKLQLLTEFEPNVPHVINFDEVRLRQIL 835

Query: 120 LNLFMVAHASLPR------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV- 172
            N+   A     +           ++  ++  +   S++  G      +   +I D    
Sbjct: 836 FNIIGNALKFTEKGYVKVTVFSENLATNNNYIQLKISVEDTGIGIATGQ-QDRIFDMFTQ 894

Query: 173 -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +       L      +++ +       + + +  K
Sbjct: 895 SEGQSTRKYGGTGLGLSITKRLTEMLGGQIILQSELGKGSIFTLIFPK 942


>gi|197124174|ref|YP_002136125.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
 gi|196174023|gb|ACG74996.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Anaeromyxobacter sp. K]
          Length = 611

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 71/225 (31%), Gaps = 17/225 (7%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL--DEVGIEDEVMQLIRLSSMSAI 61
              + S  L  +  L + + H+I +P+  I  + E L  D        +  I   +    
Sbjct: 383 RQLVRSEKLAMVGSLAAGLAHEIGTPLNVISATAEFLLPDAGEEARAQLGGIVAETERIS 442

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSWTGEKIDLSRER- 115
             ++ +      T    + + L          +         R++     +  +L  +  
Sbjct: 443 RLVRDLLSFARGTSPGKTAVALPGAVARVLSLLRITLERRRVRLETRLPDDLPELHADPD 502

Query: 116 --AKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +ILLNL + A  ++  GG+V        +D +      +  +G     P    +++D
Sbjct: 503 GLHQILLNLVVNASQAVAEGGRVVVAARAVEEDGERSVQLEVHDDGPGV-PPALRERVLD 561

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +  +   +    V  +  ++   L            +  L 
Sbjct: 562 PFFTTRAEGTGLGLAVVARIVADHGGDLRVGTGPLGGACFTVQLP 606


>gi|253699902|ref|YP_003021091.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774752|gb|ACT17333.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 1004

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 48/233 (20%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI----RLSSM 58
           +    N+  ++ + +L   I HD  + +  I  ++                      +  
Sbjct: 626 EAQMLNMQKLESLGVLAGGIAHDFNNILTGIVGNISFAQLALPAAHKAAAPLLKAEKACQ 685

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----QVSWTGEKIDLSR 113
            A      +         +     +  +       +     V                  
Sbjct: 686 RAAELASQLLTFARGGQPIKKAFSVKPLVGESLSLVLRGTNVKGVIDIADDLCVIEADEG 745

Query: 114 ERAKILLNLFMVAHASLP------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +  +   N+ + A  ++P                              S    G      
Sbjct: 746 QINQAFNNIIINAVHAMPGGGTLTIAGEDAVMEAGNRFGLAPGPYVRLSFSDQGCGIPEA 805

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +I D    +      +       +   +   +L + +          L 
Sbjct: 806 DI-ERIFDPYFTTKTSGSGLGLASTHSIIARHGGMILVDSVPKKGSTFIIYLP 857


>gi|149198158|ref|ZP_01875205.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
 gi|149138760|gb|EDM27166.1| ATP-binding region, ATPase-like protein [Lentisphaera araneosa
           HTCC2155]
          Length = 640

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 61/231 (26%), Gaps = 27/231 (11%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
           S+  + +   + + H+I +P+ AI    ELL++  I+ + M+ +   + S    L  +  
Sbjct: 266 SANKMKSEFLANVSHEIRTPMNAILGFSELLEKEDIDKKSMEYVEAINSSGRSLLHLIND 325

Query: 70  AFG-----------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SR 113
                             VD    + +   V     A      +    + +         
Sbjct: 326 ILDLSKVEAGKLELIYTKVDLRSLVNEFASVFSREFAKKNLDFLVEVDQVVPDLVSLDEV 385

Query: 114 ERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
              +IL NL   A         +        ++   +  F +   G      E   +I  
Sbjct: 386 RIRQILFNLIGNAVKFTEEGYVKVAIKADLKRNGVVDLDFVVSDTGVGI-GEEANRRIFG 444

Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       L+      +            +  L+
Sbjct: 445 AFNQASAEISKEYGGTGLGLSICKELSQLMGGSINLVSAKGEGSEFTVSLK 495


>gi|126660462|ref|ZP_01731571.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126618275|gb|EAZ89035.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 842

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 63/232 (27%), Gaps = 24/232 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
           MAK      +     +   + + H++ +P+ AI   ++L L    +  +    +++ + S
Sbjct: 373 MAKMSAEKANQAK--SEFLASMSHELRTPLNAILGYVQLMLRSTALSFDHRNNLQIINDS 430

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVS 103
               L  +      +      + L + +  +   +                        +
Sbjct: 431 GEHLLGLINDVLQMSKIEAGQMVLTETDFDLYHLLYELDTLLQLKASSKQLQLSFIRDCT 490

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    ++  ++L+N+   A     +GG          ++  F+++  G      E 
Sbjct: 491 VPQYIRTDEKKLRQVLINIIGNAIKFTEKGGITVKVWCK-GHQLFFAVQDTGQGIENEEL 549

Query: 164 FTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                     +    + +   +         +     +            + 
Sbjct: 550 EVLFSPFTQATAGIDSGEGTGLGLPISAKFINLMGGDITVNSRVGEGTTFTF 601


>gi|146313279|ref|YP_001178353.1| aerobic respiration control sensor protein ArcB [Enterobacter sp.
           638]
 gi|145320155|gb|ABP62302.1| PAS/PAC sensor hybrid histidine kinase [Enterobacter sp. 638]
          Length = 777

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 54/215 (25%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELTSEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + +       +IL NL 
Sbjct: 348 KVQLDNQPVDFTGFLADLENLSGLQAQQKGLRFVLEPTLPLPHKVVTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G  V     D  +   F ++ +G      E                     
Sbjct: 408 SNAVKFTQQGEVVVRIRFDQGDMLHFEVQDSGIGIPQDEHDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +            +  
Sbjct: 468 GTGIGLAVSRRLAKSMGGDITVSSQQGKGSTFTLT 502


>gi|78776816|ref|YP_393131.1| multi-sensor hybrid histidine kinase [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497356|gb|ABB43896.1| PAS/PAC sensor hybrid histidine kinase [Sulfurimonas denitrificans
           DSM 1251]
          Length = 884

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 57/235 (24%), Gaps = 26/235 (11%)

Query: 5   ICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           I   L +    +       S + H+I +P+ AI   + LL +  +  +  + + +   S 
Sbjct: 268 IDARLEAQK-ASQAKEYFLSNMSHEIRTPLNAILGFVNLLIDQDLSKQHRKYLEIILNSG 326

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
              L  +     ++        +      I + I+                    +    
Sbjct: 327 ENLLSIINDILDFSKLRSGEFTIEPRIFSIHNEISHTLELFVASANLKEITITSFIDPVI 386

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             E    S    +IL N    A      GG + +           S++ NG      +  
Sbjct: 387 PKELYADSLRIKQILSNFLSNAIKFTRVGGHIHVEATCKNRTLRVSVQDNGIGIAAGDIS 446

Query: 165 TQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                       +        +       L+      +               L 
Sbjct: 447 NIFTAFTQAGGAEVEHMVGTGLGLSICNQLSKHMNGSVHVVSELGQGSTFWVQLP 501


>gi|83310925|ref|YP_421189.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82945766|dbj|BAE50630.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 531

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 62/237 (26%), Gaps = 27/237 (11%)

Query: 4   NICFNLSSMDLVA------LLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQ 51
           N+     +  L A             HD+  P+  + + + LL+    +       E + 
Sbjct: 281 NLALTGQAARLAATNAELEQFAYVASHDLKQPLRMVSSYVTLLERQARDRLKGDELEFIA 340

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
             R  +      +  +        + D    +     + E    +   V+ +    +   
Sbjct: 341 FARDGASRMDRLITDLLEYSRTGRNADQFQPVALDSVLAEALHNLKVPVEEAAAEVEAAQ 400

Query: 112 --------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSL--KINGNLARFP 161
                     E  ++  NL   A        +  I +    ++  + +  + NG      
Sbjct: 401 SLPTVRGNRGELVRLFQNLIGNAIQYRTADVRPHIRISCHADQAGWVVSVRDNGIGI-PA 459

Query: 162 EKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+  ++          +  +   I       +   +  R+  E            L 
Sbjct: 460 EQCERVFGIFQRLHTRAQYEGTGIGLAICKKIVEVHGGRIWVESESGEGATFFFTLP 516


>gi|330811212|ref|YP_004355674.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379320|gb|AEA70670.1| Two-component system, sensor kinase GacS [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 916

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSA 330

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++       +      V    
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ + ++    +   S++  G     
Sbjct: 391 PLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSN 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISLRL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|325498138|gb|EGC95997.1| sensor protein KdpD [Escherichia fergusonii ECD227]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHAHQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALKMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---P 161
              +  +     ++L+NL   A        ++ I            +  NG         
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGTQAEIGIDAHVEGENLQLDVWDNGPGLPQGLEQ 827

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 AIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|320198186|gb|EFW72790.1| Osmosensitive K+ channel histidine kinase KdpD [Escherichia coli
           EC4100B]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|258621901|ref|ZP_05716931.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
 gi|258585839|gb|EEW10558.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM573]
          Length = 1205

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++    L +++      + + H++ +PI A+   +E+L      +E   L+  +  SA
Sbjct: 664 LRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSNESQLLLTNAITSA 723

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRER-- 115
                 +     ++      + L      + D +              G    ++ +   
Sbjct: 724 ERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDFIVNWQPDA 783

Query: 116 -----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I+ NL   A     +G       Q  +    F +   G     P+  
Sbjct: 784 RLLVQVDALRLNQIITNLLSNALKFTEKGSIRICVEQS-EQHFTFEVTDTGCGMTEPQIA 842

Query: 165 TQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          ++        +    V  L       +  E   D    +   L 
Sbjct: 843 SIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRVSLP 897


>gi|229101717|ref|ZP_04232434.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
 gi|228681665|gb|EEL35825.1| hypothetical protein bcere0019_8840 [Bacillus cereus Rock3-28]
          Length = 883

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 61/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E    +   + ++L  +  
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 528

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAASMHQNFLHIAAQKNVEFTVEDS 588

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+    
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFNPIETTNLSHDMQSISKDWITI 648

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 709 EGSTFTVYIP 718


>gi|239815300|ref|YP_002944210.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax
           paradoxus S110]
 gi|239801877|gb|ACS18944.1| PAS/PAC sensor signal transduction histidine kinase [Variovorax
           paradoxus S110]
          Length = 431

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 58/238 (24%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           + ++I     +  +     + + H+I +P+  +   +E L     +       + L+   
Sbjct: 182 LTRDITAVEQAEAMRRDFVANVSHEIRTPLTVLAGFVETLQNLPLDADERARYLSLMSQQ 241

Query: 57  SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           S      +  +                       +      G                 +
Sbjct: 242 SHRMETLVNDLLTLSRLEGSAAPSGNQWIRIRALLAQCEDEGRGLSGRLAPQGHRLSFTI 301

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD-SKNENIFSLKINGNLARFP 161
               E      E    + NL   A    P GG+V +S +        ++++  G      
Sbjct: 302 EAESEISGAPTELQSAMSNLLSNAIRYTPGGGEVAVSWRLLPDGRGEYAVRDTGPGIAAE 361

Query: 162 EKF---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +      +         +    V  +A  +   L  +         + +  
Sbjct: 362 HIPRLTERFYRIDRSRSRETGGTGLGLAIVKHIAQRHGAELRIQSTVGKGSRFALVFP 419


>gi|213648654|ref|ZP_03378707.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 751

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 57/229 (24%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       + +  +   + + H+I +P+  I  +++LL +  +       ++  + S  
Sbjct: 432 RQARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMANYRDDLQAINDSGE 491

Query: 62  IRLKFMRLAFGYT-------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTG 106
             L  +     Y+                +    L     ++   + V            
Sbjct: 492 SLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 551

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 R   +I++NL   A     RG  V  +  D        ++  G      +    
Sbjct: 552 TLQGDPRRIRQIVINLLSNAAKFTDRGSIVLRTFCD-DQSWFIEVEDTGCGIPEAKLTAI 610

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +       LA      L               L 
Sbjct: 611 FKPFVQATGCRGGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 659


>gi|188583721|ref|YP_001927166.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
 gi|179347219|gb|ACB82631.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium populi
           BJ001]
          Length = 785

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 67/241 (27%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            +       S  L A+  L   + HD  + +  I +S+E L    +  E           
Sbjct: 397 RQAEEALRQSQKLEAVGQLTGGVAHDFNNLLTIIRSSVEFLRRPDLAPERKARYLDAVSD 456

Query: 54  --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R       + D    L  I ++++       RV     G    +
Sbjct: 457 TVDRAAKLTGQLLAFARRQALKPETFDVGERLRSISEMLDSVTGARIRVVTDLPGAPCFV 516

Query: 112 SRERAK---ILLNLFMVAHASLP-------------RGGKVTISVQDSKNENIFSLKING 155
             + ++    L+N+ + A  ++                  +      +      S+   G
Sbjct: 517 RADASQFETALVNMAVNARDAMDGEGCLTLRLDGTAPMPPIRGHAGAAGPFVAVSVVDTG 576

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +   +I +    +        +    VI  A ++   +  +         +  L
Sbjct: 577 TGIASADLT-RIFEPFFTTKEVGRGTGLGLSQVIGFAKQSGGDVDVKSRAGEGTTFTLYL 635

Query: 214 E 214
            
Sbjct: 636 P 636


>gi|239826968|ref|YP_002949592.1| histidine kinase [Geobacillus sp. WCH70]
 gi|239807261|gb|ACS24326.1| histidine kinase [Geobacillus sp. WCH70]
          Length = 437

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 69/223 (30%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           +        M++V+ L + I H+I +P+ A    ++LL++         + +Q+      
Sbjct: 192 RKRIIRAEKMEVVSHLAASISHEIRNPLTAARGFMQLLEQHHLSPEKRKQYIQIAIEELD 251

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ-----VIEDFIAVDKRVQVSW-TGEKIDLS 112
            A   +                + +    +     +          V+ +          
Sbjct: 252 RAEAIITDYLTFAKPAPESVEKLNVKTEIERVIDLLRPFANMNSVEVKTTLAPFTITGER 311

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
            +  + LLN+   +  ++P GG + I V   K   +  +   G      E+  ++ +   
Sbjct: 312 EKFRQCLLNIMKNSIEAMPNGGVLQIYVSIEKQRMLIRISDTGVGM-TKEQIDRLGEPYF 370

Query: 173 EST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  I    +    V  +       +  +        +S  L 
Sbjct: 371 TAKGIKGTGLGMMVVYRIIESMNGTIHIKSEIHKGTEVSIYLP 413


>gi|160934781|ref|ZP_02082167.1| hypothetical protein CLOLEP_03656 [Clostridium leptum DSM 753]
 gi|156866234|gb|EDO59606.1| hypothetical protein CLOLEP_03656 [Clostridium leptum DSM 753]
          Length = 489

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 73/234 (31%), Gaps = 31/234 (13%)

Query: 13  DLVALLCS----------RICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
           ++ A L S           + H++ +P+  I   ++ + +       ++  ++++     
Sbjct: 245 NMAASLSSSEGTRRSFIANVSHELKTPMTTIAGFIDGILDGTIPPDKQNYYLKIVSDEVK 304

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                              +R+        D ++ +    +   +   V+ R        
Sbjct: 305 RLSRLVKTMLDLSRIDNGELRMNKTCFELRDIILSVMITFEDSIEKKEVEIRGLEDAPAI 364

Query: 108 KIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK--- 163
            +D   +   +++ NL   A   +   G + + V +   + +  ++ +G      E    
Sbjct: 365 FVDGDPDMIHQVVYNLVENAVKFVNPQGYIDVRVLNKGTKAVVKIRNSGQGISADEIPLI 424

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           F +    +   ++D     +  Y V  +   +   +    ++         L K
Sbjct: 425 FDKFYKTDKSRSMDKNGMGLGLYIVRTIIKLHGGDITVSSVEGEYCEFEFWLPK 478


>gi|197117559|ref|YP_002137986.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197086919|gb|ACH38190.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 356

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDL-VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           A+      +  +L  ALL S I HD+ +P+ +I  +L  L E           ++++   
Sbjct: 117 AEKARILQARENLERALLNS-ISHDLRTPLVSIKGALSALKEQGGRLSPEARRDLLETAN 175

Query: 55  LSSMSAII----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
             +                             +  LIG                      
Sbjct: 176 EEAERLNRFVGNLLDLSRLEAGALRPRIEPCDLQELIGCAISAMESRLGDRNVSVQLPQG 235

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
                       ++L+NL   A+   P  G + +  + +      ++   G  A   E  
Sbjct: 236 LTLVPLDLVLMTQVLVNLLDNANKYAPAQGSIEVEARVAGAWLSLTVADRGPGAPEAELS 295

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +     V        +       +   +  R+         + +  LL 
Sbjct: 296 HIFDKFHRVQVPEKTGGTGLGLSICKGIVEAHGGRIAARNRPQGGLAVEILLP 348


>gi|144897980|emb|CAM74844.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 717

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 54/248 (21%), Gaps = 36/248 (14%)

Query: 2   AKNICFNLSS-----MDLVALL----------CSRICHDIISPIGAIHNSLELLDEVGIE 46
            K     L +      +    L           S   HD+  P+  + + L L+      
Sbjct: 469 RKRAEAELQAVNQRLAEQAGQLMRVNADLEQFASVASHDLRQPLRMVASYLGLIRRDIQT 528

Query: 47  DEVMQLIRLSS------MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
               +L                 ++ +          D+   +   + V E    +   +
Sbjct: 529 QASPELREYLGFALDGAKRMDRLIQDLLDYSRSGRHSDAEAPVDFHQAVQEALQHLQPVI 588

Query: 101 QVSWTGEKID--------LSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFS 150
                   +            +  ++  NL   A           +    Q         
Sbjct: 589 DEQGGEVIVAETLPILSGHRGDVVRLFQNLIGNALKYRTPDRPPRVQVGCQRDGQCWRIW 648

Query: 151 LKINGNLARFPEKFTQIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +  NG      ++  ++          S  +   I       +      R+  + +    
Sbjct: 649 VTDNGRGIAEADR-ERVFKIFQRLVPSSECEGTGIGLAVCKKIVENMGGRIWIDSVPGQG 707

Query: 207 VVLSALLE 214
                 L 
Sbjct: 708 STFQVSLP 715


>gi|138894004|ref|YP_001124457.1| sensor protein ResE [Geobacillus thermodenitrificans NG80-2]
 gi|196250326|ref|ZP_03149019.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
 gi|134265517|gb|ABO65712.1| Sensor protein ResE [Geobacillus thermodenitrificans NG80-2]
 gi|196210215|gb|EDY04981.1| integral membrane sensor signal transduction histidine kinase
           [Geobacillus sp. G11MC16]
          Length = 413

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 60/235 (25%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMD-----LVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQ 51
           M   I   L  +      L  LL S I H + +P+ ++    E++         +   + 
Sbjct: 176 MRNTIRNQLDELKKEKRFLADLL-SDISHQLKTPLSSMIIYNEIMLGKQLSEEQQRMFLL 234

Query: 52  LIRLSSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
                       ++ +           ++        +++    D  +       V  R 
Sbjct: 235 QNEKQLERMKWLIQSLLKLAKLDAKALQMDRQQQSLNETVWQSIDDLREQAVEANVHIRF 294

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           + S   E         +  +N+   +    P GG + I++          +   G     
Sbjct: 295 ENSEEVEFNHDRLWLKEAFINIIKNSIEHTPPGGNIDITIVSHPLYTRVVIADTGEGISQ 354

Query: 161 PEKFT---QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +      +          DS  I       +   +   +  +         S  
Sbjct: 355 DDLPHIFKRFYKAKTSKKPDSIGIGLALAKSIIEAHGGMIEAKSELGKGTTFSIT 409


>gi|119964677|gb|ABM17106.1| sensor histidine kinase [Sulfobacillus acidophilus DSM 10332]
          Length = 477

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 69/234 (29%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +   I   +  +   A     L + + HD+ +P+ +I   LE +++       +   + +
Sbjct: 238 LQDRIERQMEQLRREAEARDALLAHVAHDLRTPLTSIRGFLEAIEDGVATGEQQKRAIHV 297

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDKRVQVS 103
               ++     +  +  A        S   L     V +             V    Q  
Sbjct: 298 AWEETLRLQRLVDRLLKATRIWSQTGSRERLALQAWVGKTIERVRPVADRAQVGVVWQNR 357

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
             G          + L+N+   A    P G  V +       + +  +   G      E 
Sbjct: 358 QDGVMWGNEDYLMEALMNVLDNAIKWSPPGSTVEVISDVVDGQAVIEVDDQGPGI-PDEL 416

Query: 164 FTQIVDGNVE---STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +  V    S   S  +    V  +  +++  ++ E   +    ++    
Sbjct: 417 LPRVFERFVTGDLSRQGSSGLGLAIVEDVVRQHQGSVVIERRPEGGTRVTLRFP 470


>gi|71908460|ref|YP_286047.1| PAS [Dechloromonas aromatica RCB]
 gi|71848081|gb|AAZ47577.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 764

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 55/240 (22%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A         M    L  + + H+I +P+ AI     +L    ++    + +     +  
Sbjct: 376 ASEAAERAEQMKTAFL--ANMSHEIRTPLNAIIGMAHILSRTELDTAQKKYVGHIDAAGE 433

Query: 62  IRLKFMRLAFGYT------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV---SWTG 106
             L  +      +                  I    +  V +        V++       
Sbjct: 434 HLLGLITNVLDMSKIEAGRLELENIPLAVENIVFEVLSMVADQAAEKGLDVRIGELDAPS 493

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARFPE 162
             +       + LLN    A      G      +            F +   G       
Sbjct: 494 GLVGDPVRLRQALLNYVSNAIKFTADGSIDVRVITQAVSEDSVLLRFEVADTGIGISAEA 553

Query: 163 KFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLEK 215
           +       +  D +         +       LA      +          +   +A L++
Sbjct: 554 RDEIFSAFRQADNSTTRRYGGTGLGLAITRQLAELMGGEVGVSSTPGQGSLFWFTASLKR 613


>gi|128595|sp|P06218|NTRB_KLEOX RecName: Full=Nitrogen regulation protein ntrB
 gi|43895|emb|CAA26923.1| ntrB protein (aa 1-349) [Klebsiella pneumoniae]
          Length = 349

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 66/238 (27%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCS-----RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           M      +   +     + +      + H+I +P+G +  + +LL +   +  +M+  ++
Sbjct: 111 MDNQRRLSQEQLQHAQQIAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPALMEYTKV 170

Query: 56  SSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
               A      +         G   +         + +++   +  + ++   +     +
Sbjct: 171 IIEQADRLRNLVDRLLGPQHPGMHVTESIHKVAERVVKLVSMELPDNVKLVRDYDPSLPE 230

Query: 111 LSRERAKILLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGN 156
           L  +  +I   L  +   +                   ++T+     +      ++ NG 
Sbjct: 231 LPHDPDQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGVRYRLAARIDVEDNGP 290

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V        +       L  ++  ++       H    S  L 
Sbjct: 291 GI-PSHLQDTLFYPMVSGREGGTGLGLSIARSLIDQHSGKIEFTSWPGH-TEFSVYLP 346


>gi|157157107|ref|YP_001461857.1| sensor protein KdpD [Escherichia coli E24377A]
 gi|300907870|ref|ZP_07125483.1| histidine kinase KdpD [Escherichia coli MS 84-1]
 gi|300927202|ref|ZP_07142937.1| histidine kinase KdpD [Escherichia coli MS 182-1]
 gi|301302171|ref|ZP_07208304.1| histidine kinase KdpD [Escherichia coli MS 124-1]
 gi|301329223|ref|ZP_07222209.1| histidine kinase KdpD [Escherichia coli MS 78-1]
 gi|157079137|gb|ABV18845.1| sensor protein KdpD [Escherichia coli E24377A]
 gi|300400434|gb|EFJ83972.1| histidine kinase KdpD [Escherichia coli MS 84-1]
 gi|300416819|gb|EFK00130.1| histidine kinase KdpD [Escherichia coli MS 182-1]
 gi|300842723|gb|EFK70483.1| histidine kinase KdpD [Escherichia coli MS 124-1]
 gi|300844460|gb|EFK72220.1| histidine kinase KdpD [Escherichia coli MS 78-1]
 gi|315255006|gb|EFU34974.1| histidine kinase KdpD [Escherichia coli MS 85-1]
 gi|323184960|gb|EFZ70327.1| sensor protein kdpD [Escherichia coli 1357]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|108803039|ref|YP_642976.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
 gi|108764282|gb|ABG03164.1| periplasmic sensor signal transduction histidine kinase
           [Rubrobacter xylanophilus DSM 9941]
          Length = 476

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 67/233 (28%), Gaps = 20/233 (8%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLS 56
            + +   L+ +        +   H++ +P+  +  + E    L  E  + + + +++  +
Sbjct: 224 QRALARRLAELSRARTEFLADASHELRTPLTVLRGNAEVGLQLATEGEVREILQEIVGEA 283

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----------VSWTG 106
              A +    + LA     S        +    +         +           +S  G
Sbjct: 284 GRMARMVEDMLFLARSEAASPPVEPRPVEAAPFLSSLADRAGALARERGARLEAGLSAEG 343

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
             +       + +L L   A      GG++++  +    E +  +  +G      E    
Sbjct: 344 RLVLDRGRVEQAVLILVDNAAKYGRPGGRISLLARREAGELVIEVSDDGPGIPEEELPRI 403

Query: 164 FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +      +    +       +A  +   L           ++  L 
Sbjct: 404 FERFYRVDKTRARRLGGAGLGLPIAKTIAEAHGGTLEARSRPGEGTTMTLRLP 456


>gi|293370725|ref|ZP_06617274.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292634195|gb|EFF52735.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 691

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 210 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 269

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++               
Sbjct: 270 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDKERII 329

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 330 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 388

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 389 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 429


>gi|316936262|ref|YP_004111244.1| histidine kinase [Rhodopseudomonas palustris DX-1]
 gi|315603976|gb|ADU46511.1| histidine kinase [Rhodopseudomonas palustris DX-1]
          Length = 454

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 67/232 (28%), Gaps = 29/232 (12%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF 66
            ++ A   +   H++ +P+ A+   ++ L     D+    +  + ++   +      +  
Sbjct: 213 EEMRADFVANASHELRTPLAALSGFIDTLQGQARDDPKARERFLGIMHAQATRMARLIDD 272

Query: 67  MRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           +        SV          +         +          + +    E + ++ +R +
Sbjct: 273 LLSLSRVELSVHVRPDALIDLRPLIKQVTDGLEPLAKERRVVIDLDLPEEPVTIAGDREE 332

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFS--------LKINGNLARFPEKFTQIVD 169
           +L     +   +L  G      V                  ++  G     PE   ++ +
Sbjct: 333 LLRLFENLIENALKYGASGGRVVVSVTTSVSGDGVPEYRALVRDFGPGI-APEHLPRLTE 391

Query: 170 GNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +     +    V  + + ++ RLL E +       +  L +
Sbjct: 392 RFYRVDVGDSRSQGGTGLGLSLVKHIVNRHRGRLLIESVLKKGATFTVCLPR 443


>gi|281177840|dbj|BAI54170.1| two-component sensor kinase [Escherichia coli SE15]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHIEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|257870717|ref|ZP_05650370.1| sensor histidine kinase/response regulator [Enterococcus gallinarum
           EG2]
 gi|257804881|gb|EEV33703.1| sensor histidine kinase/response regulator [Enterococcus gallinarum
           EG2]
          Length = 460

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 64/226 (28%), Gaps = 12/226 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++I       +   L  S + H+I +P+ +I    ++L    +++   + +      +
Sbjct: 231 LNQDIEQISQEKEKQELFVSSLSHEISTPLTSIIGYAQMLQWEDLKEPSSEFVDYILEES 290

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------EKIDL 111
                          S  + + L  I     D         +                  
Sbjct: 291 FRLKSLSEDVLRLLYSKKNEMNLEAISTDQIDSYITQFVSGLDERILLQMTLQKATIRMD 350

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIV 168
                 ++ N+F  A  ++    ++ I+   ++    F LK  G         +   +  
Sbjct: 351 FNLFKLVIANIFSNALDAMKDRKEMCITGYSNEGRYYFILKDTGQGIPEEIIDQVTDEFF 410

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            G+V        +    V  +   ++ ++           ++    
Sbjct: 411 TGDVTRNSGHLGLGLSLVKNIISLHEGQVTITSEKGEGTFITIDFP 456


>gi|325981192|ref|YP_004293594.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas
           sp. AL212]
 gi|325530711|gb|ADZ25432.1| PAS/PAC sensor signal transduction histidine kinase [Nitrosomonas
           sp. AL212]
          Length = 396

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 68/225 (30%), Gaps = 13/225 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL--------DEVGIEDEVMQLIR 54
           +        +  +  + + + H + +P+         L        +   +  + ++ + 
Sbjct: 169 QEQIRRNQRLTAMGEMAANLAHQLRTPLSTALIYANHLGGDALAPSERKKLATKTIERLH 228

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L+F++       +V     + +++QVIE  +     +         +    
Sbjct: 229 HLEHLTKDMLRFVKGETNQLETVVISSLIAELQQVIEPQMKQHNLLFTVNDYSADEFLVT 288

Query: 115 RAKILL----NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
             + L     NL   A  +   G +++ +++  K+  +FS+  NG          ++ + 
Sbjct: 289 DRQALCGALINLLENAVQASSAGSQISFTIRLEKSNIVFSVLDNGPGI-DSMLQERLFEP 347

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +   +       +       +      +        L +
Sbjct: 348 FFTTRSEGTGLGLAIARSVIQSMGGNIQINSSIERGTEFVIRLPR 392


>gi|220922969|ref|YP_002498271.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
 gi|219947576|gb|ACL57968.1| PAS/PAC sensor hybrid histidine kinase [Methylobacterium nodulans
           ORS 2060]
          Length = 969

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 59/242 (24%), Gaps = 31/242 (12%)

Query: 4   NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIR 54
                L    + A           + + H++ +P+  +    +LL  +  +      LI 
Sbjct: 568 RQERRLEQAKVAAEAGARVKAEFLANMSHELRTPLTGMLGVHDLLAGDTSLSAAQRHLIG 627

Query: 55  LSSM-------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR-------- 99
           L+              L F ++  G          L  + +   + +A   +        
Sbjct: 628 LAQEAGRSLLAIVNDILDFSKIEAGQMAIERVPFSLRALVESCRELVAESAKGKPLRLVA 687

Query: 100 -VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNL 157
            ++       +       +ILLNL   A    P+G         +        +   G  
Sbjct: 688 EIEGDVPDWYVGDPTRLRQILLNLASNAVKFTPQGEIALRVRSAAGTGRVRVEVTDTGIG 747

Query: 158 ARFPEK---FTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +           +       L       +  E I          
Sbjct: 748 IPADKLPLLFERFSQADTSTTRQYGGTGLGLVICKRLVELMGGAIGVESIPGQGSTFWFE 807

Query: 213 LE 214
           L 
Sbjct: 808 LP 809


>gi|159045886|ref|YP_001534680.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
 gi|157913646|gb|ABV95079.1| multi-sensor hybrid histidine kinase [Dinoroseobacter shibae DFL
           12]
          Length = 781

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 53/241 (21%), Gaps = 32/241 (13%)

Query: 2   AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
           AK     L++    A           + I H+I +P+  I    +++    ++ E    +
Sbjct: 368 AKQREQELAAAKTAAEEGARAKAQFLAMISHEIRTPLNGIIGMSDVMLSGPLDPEHRGNL 427

Query: 54  RLSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97
           +    S    L  +                     D    L     ++            
Sbjct: 428 QTILASGEGLLTIINDILDLSKLEAGKMEIDQLPFDLRAELQAALDLVRPLANEKGLSLS 487

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---NENIFSLKIN 154
             V     G  +       ++ LNL   A      G     +  D+         +++  
Sbjct: 488 VDVSGLPEGRILGDPGRVRQVFLNLMGNAIKFTRAGAVSLRAAVDTGAAPPRVTLAVQDT 547

Query: 155 GNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G                              +       L  +    +    +       
Sbjct: 548 GIGIPADRLDQIFDAFAQADSATTRDFGGTGLGLAISRQLTQQMGGDITVTSVPGKGSCF 607

Query: 210 S 210
           +
Sbjct: 608 T 608


>gi|167645350|ref|YP_001683013.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
 gi|167347780|gb|ABZ70515.1| integral membrane sensor hybrid histidine kinase [Caulobacter sp.
           K31]
          Length = 695

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 73/246 (29%), Gaps = 34/246 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSL-ELLDE---VGIEDEVMQLIR 54
            K +   L  +  + A+  L   + HD  + + AI   L ELL          E +  IR
Sbjct: 297 QKQMELQLAQAQKMQAIGQLAGGVAHDFNNLLTAIQLRLDELLHRHPVGDPSYEGLNEIR 356

Query: 55  LSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + A   ++ +    R        ++    + + E ++   +  D ++   +  +   
Sbjct: 357 QTGVRAADLVRKLLAFSRKQTVQREVLELGELISEFEVLLRRLLREDVKLITDYGRDLPQ 416

Query: 111 LSRERAKILLNLFMVAHAS--------------------LPRGGKVTISVQDSKNENIFS 150
           +  +++++   +  +A  +                         +         ++    
Sbjct: 417 VRADKSQLETAVMNLAVNARDAVRAAKGGGVVRIRTARLTQDEAQGLGFPGALGDQAFIE 476

Query: 151 LKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           +  +G     PE   +I D    +    +   +    V  +  ++   +           
Sbjct: 477 VSDDGPGI-PPEVMGKIFDPFFTTKPVGEGTGLGLATVYGIVKQSDGWIHVHSRPGEGAA 535

Query: 209 LSALLE 214
               L 
Sbjct: 536 FRIFLP 541


>gi|77463472|ref|YP_352976.1| two-component sensor histidine kinase [Rhodobacter sphaeroides
           2.4.1]
 gi|77387890|gb|ABA79075.1| Probable two-component sensor histidine kinase [Rhodobacter
           sphaeroides 2.4.1]
          Length = 346

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 53/237 (22%), Gaps = 32/237 (13%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAI 61
               + A+     + + H++ +P+ A+   +E L     D+       + ++   +    
Sbjct: 108 EQEQMGAIRRDFVANVSHELRTPLTALLGFIETLQGAARDDPAARSRFLGIMAREAGRMN 167

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTGEKIDLS 112
             ++ +                              +     A    +Q       I L 
Sbjct: 168 RLVQDLLSLSRVESEERVRPKTPVDVTAVIGQAIAALRPMAEAAGVEIQRQGEAGPILLP 227

Query: 113 RERAKILLNLFMVAHAS----------LPRGGKVTISVQDSKNENIFSLKINGNLA---R 159
            +  ++      +   +               +    +          +   G       
Sbjct: 228 GDPDQLTQVFHNLIENAVKYGASGKLVTVGISRDAEGLARLGPAVRIEVVDRGEGIDAIH 287

Query: 160 FPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P    +    +           +    V  + + ++ R L E            L 
Sbjct: 288 LPRLTERFYRVDNHRSREKGGTGLGLAIVKHIVNRHRGRFLIESELGQGSRFIVTLP 344


>gi|83953579|ref|ZP_00962300.1| nitrogen regulation protein NtrB [Sulfitobacter sp. NAS-14.1]
 gi|83841524|gb|EAP80693.1| nitrogen regulation protein NtrB [Sulfitobacter sp. NAS-14.1]
          Length = 363

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 68/238 (28%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIR 54
           M +N     S+      +   + H+I +P+  I  + +LL      +++ + D ++   R
Sbjct: 114 MTQNNSVK-SAAKSAIGMAEMLAHEIKNPLAGITGAAQLLSMNLSTEDLELTDLIVAESR 172

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                     +F  L      +V+    L    +          ++   +         +
Sbjct: 173 RIVKLLEQVEQFGNLMPPERKAVNLHDALDRARRSALLGFGARMKIIEDYDPSLPPALGD 232

Query: 115 RAK---ILLNLFMVAHASLPRGGKVTISVQDSKN--------------ENIFSLKINGNL 157
           + +   ++LNL   A  +    G         ++                   +  +G  
Sbjct: 233 KDQLLQVVLNLIKNASEAAGPSGGTIRLHSYYEHSFRMRRSDGTAQSLPLQIEVIDDGPG 292

Query: 158 ARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    + +  V    +   +    V  +  ++   +  + +     V    L +
Sbjct: 293 L-PEAIRADVFEPFVSGRENGTGLGLALVSKIISDHGGWITVDSVPGK-TVFRISLPR 348


>gi|148256774|ref|YP_001241359.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1]
 gi|146408947|gb|ABQ37453.1| cell cycle control histidine kinase CckA [Bradyrhizobium sp. BTAi1]
          Length = 892

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 66/241 (27%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +N       M++V  L   I HD  + + AI  + + L           + +  I+ ++ 
Sbjct: 496 ENQINQSQKMEMVGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNAT 555

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +            ++ LGD    +   +      +V                
Sbjct: 556 RAATLVRQLLAFSRRQTLRPQVLDLGDALSDLTMLLRRLIGEKVKLDLVHGRDLWPVKVD 615

Query: 114 --ERAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGN 156
             +  ++++NL + A  ++P G                +         +     +   G 
Sbjct: 616 VSQFEQVVVNLAVNARDAMPDGGKLSVRTANVSADEAAQGAYKGMPVADYVRIEISDTGT 675

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E   +I +    +        +    V  +  +    +  +            L 
Sbjct: 676 GI-PAEIREKIFEPFFSTKEVGKGTGLGLSTVYGIIKQTGGFIYVDSEVGKGTTFQIFLP 734

Query: 215 K 215
           +
Sbjct: 735 R 735


>gi|191167198|ref|ZP_03029017.1| sensor protein KdpD [Escherichia coli B7A]
 gi|193070633|ref|ZP_03051570.1| sensor protein KdpD [Escherichia coli E110019]
 gi|300817789|ref|ZP_07098003.1| histidine kinase KdpD [Escherichia coli MS 107-1]
 gi|307312600|ref|ZP_07592232.1| Osmosensitive K channel His kinase sensor [Escherichia coli W]
 gi|309795443|ref|ZP_07689860.1| histidine kinase KdpD [Escherichia coli MS 145-7]
 gi|190902746|gb|EDV62476.1| sensor protein KdpD [Escherichia coli B7A]
 gi|192956021|gb|EDV86487.1| sensor protein KdpD [Escherichia coli E110019]
 gi|300529486|gb|EFK50548.1| histidine kinase KdpD [Escherichia coli MS 107-1]
 gi|306907302|gb|EFN37807.1| Osmosensitive K channel His kinase sensor [Escherichia coli W]
 gi|308120818|gb|EFO58080.1| histidine kinase KdpD [Escherichia coli MS 145-7]
 gi|315059938|gb|ADT74265.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein [Escherichia coli W]
 gi|323379500|gb|ADX51768.1| Osmosensitive K channel His kinase sensor [Escherichia coli KO11]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|193065552|ref|ZP_03046620.1| sensor protein KdpD [Escherichia coli E22]
 gi|194429082|ref|ZP_03061613.1| sensor protein KdpD [Escherichia coli B171]
 gi|260842908|ref|YP_003220686.1| fused sensory histidine kinase KdpD in two-component regulatory
           system with KdpE: signal sensing protein [Escherichia
           coli O103:H2 str. 12009]
 gi|192926841|gb|EDV81467.1| sensor protein KdpD [Escherichia coli E22]
 gi|194412913|gb|EDX29204.1| sensor protein KdpD [Escherichia coli B171]
 gi|257758055|dbj|BAI29552.1| fused sensory histidine kinase KdpD in two-component regulatory
           system with KdpE: signal sensing protein [Escherichia
           coli O103:H2 str. 12009]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|323191047|gb|EFZ76312.1| sensor protein kdpD [Escherichia coli RN587/1]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|320194138|gb|EFW68770.1| Osmosensitive K+ channel histidine kinase KdpD [Escherichia coli
           WV_060327]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHIEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|307717937|ref|YP_003873469.1| histidine kinase [Spirochaeta thermophila DSM 6192]
 gi|306531662|gb|ADN01196.1| putative histidine kinase [Spirochaeta thermophila DSM 6192]
          Length = 900

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSM 58
           +     L   +   +   + + H++ +P+ AI    E L    +    +  +QL+   + 
Sbjct: 392 REANRLLEKANRAKSEFLANVSHEMRTPLHAIMGFAEALKGEQDPREREGHLQLLLSEAQ 451

Query: 59  SAIIRLKFMRLAFGYTG--------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
              + +  +                  +    +G + +V+E+            ++    
Sbjct: 452 RLKVLIDEILDVEKMEQGKLTLDESPFNLHEVVGYVCRVMEENARRKGLSFSFEIEDGVP 511

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPE 162
              +       ++++NL   A           +V    +         ++  G      E
Sbjct: 512 VWVVGDPFRLQQVIMNLVGNAVKFTEEGGVRVRVGCVEEGEGRWIEVEVRDTGIGI-PEE 570

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +                 +       L       +  E        +   + 
Sbjct: 571 MREKVFESFVQADTSTTRRYGGSGLGMTIARELVRLMGGDVWLESEVGKGTRVWFRIP 628


>gi|300920764|ref|ZP_07137168.1| histidine kinase KdpD [Escherichia coli MS 115-1]
 gi|300412265|gb|EFJ95575.1| histidine kinase KdpD [Escherichia coli MS 115-1]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEDENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|229095613|ref|ZP_04226594.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
 gi|228687745|gb|EEL41642.1| hypothetical protein bcere0020_8660 [Bacillus cereus Rock3-29]
          Length = 883

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 61/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E        + ++L  +  
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+  I 
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWIII 648

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 709 EGSTFTVYIP 718


>gi|229114563|ref|ZP_04243977.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
 gi|228668628|gb|EEL24056.1| hypothetical protein bcere0017_8600 [Bacillus cereus Rock1-3]
          Length = 883

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E        + ++L  +  
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+    
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 648

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 709 EGSTFTVYIP 718


>gi|291281630|ref|YP_003498448.1| sensor protein KdpD [Escherichia coli O55:H7 str. CB9615]
 gi|209776668|gb|ACI86646.1| sensor for high-affinity potassium transport system [Escherichia
           coli]
 gi|209776674|gb|ACI86649.1| sensor for high-affinity potassium transport system [Escherichia
           coli]
 gi|290761503|gb|ADD55464.1| sensor protein KdpD [Escherichia coli O55:H7 str. CB9615]
 gi|320638131|gb|EFX07895.1| sensor protein KdpD [Escherichia coli O157:H7 str. G5101]
 gi|320643535|gb|EFX12705.1| sensor protein KdpD [Escherichia coli O157:H- str. 493-89]
 gi|320648870|gb|EFX17497.1| sensor protein KdpD [Escherichia coli O157:H- str. H 2687]
 gi|320654454|gb|EFX22501.1| sensor protein KdpD [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320660028|gb|EFX27562.1| sensor protein KdpD [Escherichia coli O55:H7 str. USDA 5905]
 gi|320664934|gb|EFX32069.1| sensor protein KdpD [Escherichia coli O157:H7 str. LSU-61]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|218553226|ref|YP_002386139.1| sensor protein KdpD [Escherichia coli IAI1]
 gi|218694121|ref|YP_002401788.1| sensor protein KdpD [Escherichia coli 55989]
 gi|256020633|ref|ZP_05434498.1| sensor protein KdpD [Shigella sp. D9]
 gi|332281828|ref|ZP_08394241.1| signal sensing protein [Shigella sp. D9]
 gi|218350853|emb|CAU96549.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein ; sensory histidine
           kinase [Escherichia coli 55989]
 gi|218359994|emb|CAQ97539.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein ; sensory histidine
           kinase [Escherichia coli IAI1]
 gi|332104180|gb|EGJ07526.1| signal sensing protein [Shigella sp. D9]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|254410625|ref|ZP_05024404.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
 gi|196182831|gb|EDX77816.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
          Length = 460

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 57/234 (24%), Gaps = 20/234 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           M + +        L     S + H+  +P+  I  S++LL           +   +Q I 
Sbjct: 220 MRRQLERQQELSQLQLRFFSLVSHEFRTPLSTILASVQLLQLCSDQFSPDKKIRNLQRIE 279

Query: 55  LSSMSAIIRLKFMRLAF--------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            ++      L  + +               V+       I   I         +++    
Sbjct: 280 AATQRLRQMLDNILIINRAETGQLEFQPRRVNLEQFCQGILAEILRNPDNPYDLKLVRQA 339

Query: 107 EKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           +      +   +   L      +    P G  + +    +  E IF +   G      + 
Sbjct: 340 DCSRACLDEQLLRSILINLLTNSIKYSPPGSTIILRQTCTIAEVIFQVCDQGIGILDDDI 399

Query: 164 ---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F     G    +I    +               +            +  + 
Sbjct: 400 IHIFESFYRGKNIDSIPGSGLGLTVAKTCVIVQGGNISVTSEPGVGTTFTVTIP 453


>gi|163851209|ref|YP_001639252.1| PAS sensor protein [Methylobacterium extorquens PA1]
 gi|163662814|gb|ABY30181.1| PAS sensor protein [Methylobacterium extorquens PA1]
          Length = 1125

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 37/245 (15%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS- 59
                S+    +   + + H+I +P+  I    +LL +       +   ++LIR+S  S 
Sbjct: 582 EAERASAAK--SEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLELIRVSGESL 639

Query: 60  ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGE 107
                  L   ++  G          LG + +     +          V+ R+       
Sbjct: 640 LTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPAS 699

Query: 108 KIDLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLA 158
            +  +    ++L NL   A    P           G V  +   +     F +   G   
Sbjct: 700 VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADGGTAEALRFEISDTGIGI 759

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LS 210
              ++  ++          +        +       L       +  E  +        +
Sbjct: 760 APSQRH-RLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFT 818

Query: 211 ALLEK 215
             L +
Sbjct: 819 LALPR 823


>gi|77460432|ref|YP_349939.1| periplasmic sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77384435|gb|ABA75948.1| putative two-component sensor kinase and response regulator
           [Pseudomonas fluorescens Pf0-1]
          Length = 633

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 70/243 (28%), Gaps = 29/243 (11%)

Query: 1   MAKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           MA+ I     +       +   + + H++ +P+  +   L+LL+   + +E ++   L+S
Sbjct: 247 MAQLIQTREEAEKANNAKSDFLAMMSHELRTPMNGVLGMLQLLETTDMTEEQVEYAALAS 306

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    LK +     ++    S + L  I   + + I    +                  
Sbjct: 307 ESTEHLLKVINDILDFSRIERSELELEHIPFNLAEVIGACAQSFQHSAAQRGLALQLRIP 366

Query: 105 ----TGEKIDLSRERAKILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGN 156
                 +         +IL+NL   A     +          S+         +++ +G 
Sbjct: 367 EDLRDLQVQGDPTRIRQILVNLVGNALKFTEQGRVSIEAQWQSLDHELLWFTCAVRDSGI 426

Query: 157 LARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                            D ++        +       LA      L  +  +    V + 
Sbjct: 427 GISPESLELMFNAFQQADSSISRRYGGTGLGLPIARTLAERMGGTLRAQSEEGRGSVFTL 486

Query: 212 LLE 214
            + 
Sbjct: 487 EIP 489


>gi|21232525|ref|NP_638442.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767390|ref|YP_242152.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114317|gb|AAM42366.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572722|gb|AAY48132.1| two-component system sensor protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 536

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI+ + +LL+E       +  ++Q+I        
Sbjct: 306 RAESLTLSAMGRFSASLAHEIRNPLAAINYASQLLEESPDIGDADRRLLQIIHQQCQRTN 365

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113
             ++ +        +    + L    +           ++           +   +   +
Sbjct: 366 GIVESVLGLARRERASPENLDLAAFVRRFVVEYRQTLSMETDILEASIEGASVHALIDPK 425

Query: 114 ERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              ++L  L   A      L    +V + V+  +      +   G          Q+   
Sbjct: 426 HLHQVLTALVHNALKYGRILDEPARVKLRVERRERMVAIDVIDRGPGIPET-VAAQLFRP 484

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ +L    +         LL+
Sbjct: 485 FYTTSEHGTGLGLYIAQELCRANQAQLDYVSVPGGGACFRILLQ 528


>gi|32474805|ref|NP_867799.1| histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
 gi|32445345|emb|CAD75346.1| putative histidine kinase (PhoR1) [Rhodopirellula baltica SH 1]
          Length = 445

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++        ++     + + H++ +P+ AI    E ++     +       MQ I    
Sbjct: 201 RDETEARRVEEMRREFIANVSHELKTPLAAIKGYAETVELAVQDDPDAALHFMQQIMSQC 260

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +     +  M          A  +  SV     + D  +  E   A +    +       
Sbjct: 261 LRLERLVHEMMQLARAQAGPANLHLSSVSLSEIVSDAIRTYEPVAAANGLDLIQEVPSGE 320

Query: 110 DLSRERAKILLNLFMVAH----ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                  +  L +            P GG++ +S+ +  ++    ++  G    + E   
Sbjct: 321 AKIIADREATLTIANNLIGNALRYTPSGGEIRVSIVEQTDQWALVVEDTGVGIPYSEQQR 380

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +   G+           +    V  L    +  +               L 
Sbjct: 381 IFERFYRGSRNEESSTSGTGLGLAIVKHLTQAQQGDVSVTSTPGEGSRFCVCLP 434


>gi|17230651|ref|NP_487199.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
 gi|17132254|dbj|BAB74858.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
          Length = 385

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 61/220 (27%), Gaps = 21/220 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIRLKFMRL 69
           +   S + HDI +P+  I  +  LL     +         +Q+IR +  +    L  + L
Sbjct: 163 SEFVSMLSHDIRNPLNTILLAAGLLQNNEDKLTKEKKRSHLQMIRSAIKNMAQLLDEVSL 222

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------------AK 117
                        +    +     +  + ++ +      +  +  +              
Sbjct: 223 IGKAESGKLQCELISIDLEAFCRQLVAEAQLTIGEKHLTVIFTCNKSFDEALLDETLLRH 282

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
           IL N+   A      GG +   +    N  +F ++  G      +    F     G    
Sbjct: 283 ILGNVLGNAIKYSLPGGIIHFELTAQNNAVMFKIQDCGIGISQEDQKQLFQSFHRGENVG 342

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I    +    V      +   ++           + +L 
Sbjct: 343 GIAGTGLGLAIVKKCVDAHGGEIIVNSEVGVGTTFTIILP 382


>gi|194439220|ref|ZP_03071300.1| sensor protein KdpD [Escherichia coli 101-1]
 gi|253774331|ref|YP_003037162.1| sensor protein KdpD [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|297517253|ref|ZP_06935639.1| sensor protein KdpD [Escherichia coli OP50]
 gi|194421805|gb|EDX37812.1| sensor protein KdpD [Escherichia coli 101-1]
 gi|242376458|emb|CAQ31160.1| KdpD sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253325375|gb|ACT29977.1| Osmosensitive K channel His kinase sensor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|323963146|gb|EGB58715.1| osmosensitive K+ channel protein His kinase sensor
           domain-containing protein [Escherichia coli H489]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|188491761|ref|ZP_02999031.1| osmosensitive K+ channel His kinase sensor domain family
           [Escherichia coli 53638]
 gi|188486960|gb|EDU62063.1| osmosensitive K+ channel His kinase sensor domain family
           [Escherichia coli 53638]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|157160175|ref|YP_001457493.1| sensor protein KdpD [Escherichia coli HS]
 gi|157065855|gb|ABV05110.1| sensor protein KdpD [Escherichia coli HS]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|328472789|gb|EGF43638.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 220]
          Length = 597

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 357 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 412

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M           ++          L  +     V+     V+  +++  
Sbjct: 413 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENYVELGLELET 472

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +     +R  ++L+NL M A     + G         ++ ++++  + ++  NG+  
Sbjct: 473 PDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGI 532

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  E            
Sbjct: 533 AEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIIT 592

Query: 213 LE 214
           L 
Sbjct: 593 LP 594


>gi|320161971|ref|YP_004175196.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
 gi|319995825|dbj|BAJ64596.1| putative two-component sensor histidine kinase [Anaerolinea
            thermophila UNI-1]
          Length = 1349

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 61/244 (25%), Gaps = 33/244 (13%)

Query: 4    NICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLS 56
             +   + + +L  +   S + H++ +P+ ++    ELL           +   +  IR +
Sbjct: 1102 QLYQAVQNANLAKSEFVSFVAHELKNPMTSVKGYTELLAAGAVGPVNEAQANFLNTIRAN 1161

Query: 57   SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-------- 108
                   +  +            L         + + +    R Q+    +         
Sbjct: 1162 IERMNTLVSDLNDLSKIEVGRLRLEFKAVSLAEVVEGVVRSTRRQIDEKKQTLEIAIPAD 1221

Query: 109  ----IDLSRERAKILLNLFMVAHASLPRGGKV---------TISVQDSKNENIFSLKING 155
                        ++L+NL   AH   P+GG +           + +         +K +G
Sbjct: 1222 LPPAWADRTRLEQVLVNLVSNAHKYTPQGGHILVAAERAKNVWNPEGVPEVIHVWVKDDG 1281

Query: 156  NLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                  ++                 +    +       L       +  E          
Sbjct: 1282 IGISEEDQKKIFQKFFRSEDPKTREVPGTGLGLNITKSLVEMQGGNIWFESEFRKGTTFH 1341

Query: 211  ALLE 214
              + 
Sbjct: 1342 FTVP 1345


>gi|296268178|ref|YP_003650810.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
 gi|296090965|gb|ADG86917.1| GAF sensor hybrid histidine kinase [Thermobispora bispora DSM 43833]
          Length = 1214

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 17/256 (6%), Positives = 58/256 (22%), Gaps = 43/256 (16%)

Query: 2    AKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQL 52
                     +  L       +   + + H++ +P+ ++    +LL +          ++ 
Sbjct: 751  QARRALEERAEQLAISSRYKSEFLANMSHELRTPLNSLLVLAKLLADNAEGNLTPRQVEF 810

Query: 53   IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-------- 104
             +    +    L+ +      +      + +   +  +   +   +              
Sbjct: 811  AKTIHEAGTALLQLINDILDLSKVEAGRMDIHPQQISLPRLVEYMEATFAPLAEDKELAF 870

Query: 105  --------TGEKIDLSRERAKILLNLFMVAHASLP-------------RGGKVTISVQDS 143
                      E     +   ++L NL   A                         +++++
Sbjct: 871  TVRLDPSAPQEIYTDEQRLQQVLRNLLSNAIKFTHEGEVRLEVGRAPADVQYADEALKNT 930

Query: 144  KNENIFSLKINGNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLL 198
             +   F +   G            +  +  DG          +       +A      + 
Sbjct: 931  PDMLAFRVIDTGIGIAPNKLDVIFEAFRQADGTTSRKYGGTGLGLSICRQIARLLGGEIH 990

Query: 199  PEIIDDHNVVLSALLE 214
                       +  L 
Sbjct: 991  VASTPGEGSTFTLYLP 1006


>gi|260771955|ref|ZP_05880872.1| nitrogen regulation protein NR(II) [Vibrio metschnikovii CIP 69.14]
 gi|260612822|gb|EEX38024.1| nitrogen regulation protein NR(II) [Vibrio metschnikovii CIP 69.14]
          Length = 348

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL+ +    E+ +  ++    A
Sbjct: 117 LTQELNQHAQQQA-AKLLVRSLAHEIKNPLGGLRGAAQLLERMLPNRELTEYTQIIIEQA 175

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q+IE        ++  +     +L  + 
Sbjct: 176 DRLRTLVDRLLGPQKPGKKTHENLHVILEKVRQLIELETTHSITIERDYDPSLPELLMDT 235

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I     K      +  NG     
Sbjct: 236 DQIEQALLNIVSNAAQILAHQPYGMITLRTRTVHQANIHGHRHKLAAKIEIIDNGPGIPL 295

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V        +       L  ++  ++  E         +  L 
Sbjct: 296 -ELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGR-TAFTIYLP 347


>gi|227510112|ref|ZP_03940161.1| possible histidine kinase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
 gi|227190491|gb|EEI70558.1| possible histidine kinase [Lactobacillus brevis subsp. gravesensis
           ATCC 27305]
          Length = 498

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/239 (8%), Positives = 56/239 (23%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
           M +++           +      +   H++ +P+  I   LE +           + + L
Sbjct: 238 MTESLEKANQEIQRQEERRQEFLADAAHEMRTPLTTISGILEGIKYDVIPQEQRGKSIDL 297

Query: 53  IRLSSMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +   +   I  +                   +  +   L  + +              +Q
Sbjct: 298 MSNETQRLIRLVNENLDYEKIRSNSIRLEKRHFNATKVLSSIVEQLGSKASESKDRFEIQ 357

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA--- 158
                          +I+ N+   A      G    I  +         +K  G      
Sbjct: 358 APDDLPIYADYDRFVQIVFNITNNAIQFTDSGTITLIGERGYNETI-IRIKDTGIGMTKE 416

Query: 159 ---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 E++ +              +    V  L  ++  ++            + ++ 
Sbjct: 417 QQKNIFERYYKADASRRARKYGESGLGLAIVHQLVQQHGGKISVASKPHKGTTFTVIIP 475


>gi|218438439|ref|YP_002376768.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
 gi|218171167|gb|ACK69900.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7424]
          Length = 585

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 67/242 (27%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVA-----LLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIR 54
           +       L +  L       L+   + H++ +P+ AI    +LL +    +   +    
Sbjct: 198 LKNEHSARLEAEQLNQIKDEFLMM--LSHELRTPLTAILGWSQLLKKGLITQKNKVDKAL 255

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DK 98
            +          +         + +   +   E +  +FI                   K
Sbjct: 256 ETIERNAKLESKLVDDLLDVSRILANKLILKKEPIDLEFIIKLTLDSILLTAQAKEITIK 315

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            +  S   +     +   ++  +L   A      GG +TI++          +   G   
Sbjct: 316 TLIQSPNLKVWGDKQRLQQVFWHLLSNAIKFTGEGGVITITLTQDNERAKIIIHDTGQGI 375

Query: 159 RF---PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSAL 212
           +    P  F +    +  S        I       L   +  ++  E   ++     + +
Sbjct: 376 KPELLPFVFKRFWQADSSSQRIAGGLGIGLSIAHRLVELHNGQIQAESLGEEKGATFTVI 435

Query: 213 LE 214
           L 
Sbjct: 436 LP 437


>gi|254443566|ref|ZP_05057042.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198257874|gb|EDY82182.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 730

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 71/240 (29%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           AK +     S +   +   S I H++ +P+ +I +  + L E         + E ++++ 
Sbjct: 350 AKKLAVVAQSSNKAKSYFLSNISHELRTPLNSIVSLTQALLEGTFGDLNAKQHENLEIVS 409

Query: 55  LSSMSAIIRLKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            SS      +             M L F   G  D       + +       V   ++++
Sbjct: 410 ESSKHLQSLINDILDLSKIELGKMTLKFAQAGIGDIARSSIRMIEQEASLKNVRCILEIN 469

Query: 104 WT-GEKIDLSRERAKILLNLFMVAHASLPRGGKV--TISVQDSKNENIFSLKINGNLARF 160
                    ++   +ILLNL + A         V   I         +F++  +G     
Sbjct: 470 TELENIEVDAKRLRQILLNLLVNAVKFTKSNTDVTLQIEENSENESVVFNVIDHGIGIDQ 529

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + F++I               +   +           +   L      D     +  L 
Sbjct: 530 ND-FSKIFSPFTQLDDSLSRHYEGTGLGLAIASKFVELHGGGLRVASTPDLGSTFTISLP 588


>gi|149915148|ref|ZP_01903676.1| two-component hybrid sensor and regulator, putative [Roseobacter
           sp. AzwK-3b]
 gi|149810869|gb|EDM70708.1| two-component hybrid sensor and regulator, putative [Roseobacter
           sp. AzwK-3b]
          Length = 1108

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 64/234 (27%), Gaps = 24/234 (10%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           +       + +L      + + H++ +P+ AI+   +LL++          I     S+ 
Sbjct: 652 QEAKEKAEAANLAKTRYMTGLSHELRTPLNAIYGFAQLLEKDPGLAPWRPSITSIRRSSE 711

Query: 62  IRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-- 111
                +      +           D +     ++QV   F    ++  + +         
Sbjct: 712 HLAGLIEGLLDISRIEAGRLDLTRDRVNLRMFVKQVASIFQEEARKKGIDFRVTTHGFLP 771

Query: 112 ------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                  +   +I++NL   A      G         ++     ++   G     P+  T
Sbjct: 772 TLVGTDEKRLRQIIINLLSNAIRYTDSGVVSFDLTYRNEVAI-ITVADTGIGI-SPDNMT 829

Query: 166 QIVDGNV---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA--LLE 214
           +I        +++     +      LL       +                +L 
Sbjct: 830 RIWRPFERAGQTSGPGSGLGLTITKLLVEILGGDIDVTSAPGQGSTFRVRMMLP 883


>gi|254249290|ref|ZP_04942610.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
 gi|124875791|gb|EAY65781.1| Hypothetical protein BCPG_04150 [Burkholderia cenocepacia PC184]
          Length = 1044

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 57/243 (23%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
            + +   L + D       A L   + H+I +P+ AI  +LEL+    + D   + ++  
Sbjct: 541 ERKLDEALRAADAANDAKSAFLA-TMSHEIRTPLNAILGNLELIGREPLADTQRERLQTV 599

Query: 57  SMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRV 100
             ++ +                          D    +     + E          D  V
Sbjct: 600 EGASSVLLNLISDILDLSKIEAGQMTIEAIPFDLAEAIEQTGAMFEPLATAKGLQYDVIV 659

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGN 156
             +     +       +I  NL   A     RG               +  +  +   G 
Sbjct: 660 DDALASRYVGDPVRIRQIAANLVGNAIKFTDRGDVTLEVYLRDDADPASPVVIGVSDTGI 719

Query: 157 LARFPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                ++            ++        +       L       +  +           
Sbjct: 720 GMTDAQRAALFRPFTQADTSITRRYGGTGLGLALTKHLTQMMDGAIDVKSAPGEGSTFVV 779

Query: 212 LLE 214
            L 
Sbjct: 780 TLP 782


>gi|46908181|ref|YP_014570.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093376|ref|ZP_00231143.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|226224552|ref|YP_002758659.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes Clip81459]
 gi|254825557|ref|ZP_05230558.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|254852849|ref|ZP_05242197.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|254931881|ref|ZP_05265240.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|254992997|ref|ZP_05275187.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J2-064]
 gi|255520088|ref|ZP_05387325.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes FSL J1-175]
 gi|300763741|ref|ZP_07073738.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|46881451|gb|AAT04747.1| sensor histidine kinase ResE [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47018247|gb|EAL09013.1| sensor histidine kinase ResE [Listeria monocytogenes str. 4b H7858]
 gi|225877014|emb|CAS05723.1| Putative two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258606182|gb|EEW18790.1| sensor histidine kinase ResE [Listeria monocytogenes FSL R2-503]
 gi|293583432|gb|EFF95464.1| sensor histidine kinase ResE [Listeria monocytogenes HPB2262]
 gi|293594798|gb|EFG02559.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J1-194]
 gi|300515477|gb|EFK42527.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N1-017]
 gi|328466295|gb|EGF37452.1| two-component sensor histidine kinase (ResE) [Listeria
           monocytogenes 1816]
 gi|332312388|gb|EGJ25483.1| Sensor protein ResE [Listeria monocytogenes str. Scott A]
          Length = 596

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 356 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 411

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M           ++          L  +     V+     V+  +++  
Sbjct: 412 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENYVELGLELET 471

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +     +R  ++L+NL M A     + G         ++ ++++  + ++  NG+  
Sbjct: 472 PDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGI 531

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  E            
Sbjct: 532 AEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIIT 591

Query: 213 LE 214
           L 
Sbjct: 592 LP 593


>gi|332308597|ref|YP_004436448.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175926|gb|AEE25180.1| multi-sensor hybrid histidine kinase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1001

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 21/248 (8%), Positives = 62/248 (25%), Gaps = 38/248 (15%)

Query: 3   KNICFNLSSMDLV--------ALLC-----SRICHDIISPIGAIHNSLELLDEVGIEDEV 49
           +      ++  L         A L      + + H+I +P+ +I    + +    I+   
Sbjct: 392 RTQALREANQKLAQSNQELIEANLAKDHFLANMSHEIRTPLTSIIGYADGMLLGDIDKTE 451

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI--------------- 94
            + +          L  +         +D+       +      +               
Sbjct: 452 QERVTSIIYQNGAHLLRIINDILDLSKIDANKLDFKSQPCHLFSLLGQIESVVGKRAKDK 511

Query: 95  --AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
                         + I  +    +IL NL   A       G + + V+ + +    ++ 
Sbjct: 512 GLGFHVNYDFPLPEKIITDATRLKQILFNLTNNALKFT-HSGHICLDVKAAGSTLTINVV 570

Query: 153 INGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             G      +   ++ +        +   +    +       LA      +  +      
Sbjct: 571 DTGEGISQNDV-QKLFNPFTQADSVINRQVGGTGLGLSIAKRLAQGLGGDINAKSQPRKG 629

Query: 207 VVLSALLE 214
              +  ++
Sbjct: 630 STFTITIK 637


>gi|330954252|gb|EGH54512.1| type IV pilus sensor protein PilS [Pseudomonas syringae Cit 7]
          Length = 530

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 62/228 (27%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQ 355

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L           A ++ + V  +   +   
Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPNQSIHVDISPGTLTTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            +        + +            +  +G         
Sbjct: 416 MDSGQLTQIMTNLLQNGLRYSGKNHPSAQVWLKLHNDPRSELPTLEVLDDGPGVSEQHLS 475

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            +I +    +      +  Y    L   N+  L           L   
Sbjct: 476 -KIFEPFFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRIT 522


>gi|322368588|ref|ZP_08043156.1| putative signal-transducing histidine kinase [Haladaptatus
           paucihalophilus DX253]
 gi|320551872|gb|EFW93518.1| putative signal-transducing histidine kinase [Haladaptatus
           paucihalophilus DX253]
          Length = 738

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 59/211 (27%), Gaps = 4/211 (1%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       +  L     S I HD+ +P+      LEL  E G +    +    +     
Sbjct: 530 KRKQELKRQNERLE-EFASVISHDLRNPLNVAQGHLELAKERGEDRHF-EKSESALDRME 587

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
             +  +         V     +     V + +  V+   +         +  +  ++   
Sbjct: 588 SLIADLLTLARQGQVVSETEPVELPTIVRQAWSNVETGDRTLIVDTLGTVDADPGRLQ-E 646

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDI 181
           LF     +         +V+  +  + F ++ +G      E+   + +    +      +
Sbjct: 647 LFENLFRNAVEHAGDETTVRVGELADGFYVEDDGPGIPPEER-DAVFEHGHTTAKSGSGL 705

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               V  +A+ +   +      D        
Sbjct: 706 GLSIVKGIANAHGWSISVSDGSDGGARFRIR 736


>gi|300115540|ref|YP_003762115.1| integral membrane sensor signal transduction histidine kinase
           [Nitrosococcus watsonii C-113]
 gi|299541477|gb|ADJ29794.1| integral membrane sensor signal transduction histidine kinase
           [Nitrosococcus watsonii C-113]
          Length = 733

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 59/231 (25%), Gaps = 26/231 (11%)

Query: 9   LSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF 66
           + +    A   +  R+ H+I +P+  I  S E L    ++      I+         +  
Sbjct: 491 VQAQRNAAWGEVARRLAHEIKNPLTPIQLSAERLRRKYLKCLPADQIQPLDRLTHTIIAQ 550

Query: 67  MRLAFGY--------------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI--D 110
           +                      S+D    + ++ ++                       
Sbjct: 551 VEAMKEMVNAFSEYARNPALQQQSLDFNSLVKEVLELYRGDENKLYIEAQLAPQPLWLLA 610

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-------ENIFSLKINGNLARFPEK 163
                 ++L NL   A  ++    K       +++            +   G     PE 
Sbjct: 611 DPSRLRQLLHNLLKNALEAMANSPKTPHITVQTRHREVKKREWVELQIIDQGPGI-PPEL 669

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              + +  V +      +    V  +  E    +  + +      L   L 
Sbjct: 670 CQNLFEPYVSTRPKGTGLGLAIVKRIVEEQGGYVSAKNLPGGGACLIIQLP 720


>gi|260866829|ref|YP_003233231.1| fused sensory histidine kinase KdpD in two-component regulatory
           system with KdpE: signal sensing protein [Escherichia
           coli O111:H- str. 11128]
 gi|257763185|dbj|BAI34680.1| fused sensory histidine kinase KdpD in two-component regulatory
           system with KdpE: signal sensing protein [Escherichia
           coli O111:H- str. 11128]
 gi|323179835|gb|EFZ65392.1| sensor protein kdpD [Escherichia coli 1180]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|260853933|ref|YP_003227824.1| fused sensory histidine kinase KdpD in two-component regulatory
           system with KdpE: signal sensing protein [Escherichia
           coli O26:H11 str. 11368]
 gi|257752582|dbj|BAI24084.1| fused sensory histidine kinase KdpD in two-component regulatory
           system with KdpE: signal sensing protein [Escherichia
           coli O26:H11 str. 11368]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|255320986|ref|ZP_05362159.1| sensor protein [Acinetobacter radioresistens SK82]
 gi|262379924|ref|ZP_06073079.1| sensor protein [Acinetobacter radioresistens SH164]
 gi|255301950|gb|EET81194.1| sensor protein [Acinetobacter radioresistens SK82]
 gi|262298118|gb|EEY86032.1| sensor protein [Acinetobacter radioresistens SH164]
          Length = 521

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 11/219 (5%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM------QLI 53
           A+ I   +  + L+AL  L + I H+I +P+ AI  + ELL +   E   M      +  
Sbjct: 299 AQKIKQQVQQLKLMALGQLSASIAHEIRNPLAAIVQANELLADSQPEQLQMLTGMIDRQS 358

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           +         L   R +      +     L  +       I    ++Q+           
Sbjct: 359 QRIDKIIHDTLNMARNSPTEPAKIRLSGFLSQVLNEDLIDIKQAVQLQIEQDIWIYFDEL 418

Query: 114 ERAKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +  ++L+NL   A          + I V  ++      +   G      +    +     
Sbjct: 419 QLRQVLINLIRNALRHNSAEQSFIIIRVHGTEERGWIDVIDFGQGVAERDISQ-LFKPFF 477

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            + I+   +  Y        N  +L   +          
Sbjct: 478 STEINGTGLGLYLSHSFCEANHAKLTY-VKQQQGACFRI 515


>gi|238783103|ref|ZP_04627129.1| Osmolarity sensor protein envZ [Yersinia bercovieri ATCC 43970]
 gi|238715899|gb|EEQ07885.1| Osmolarity sensor protein envZ [Yersinia bercovieri ATCC 43970]
          Length = 429

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 69/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 198 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 257

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +  V +    +           
Sbjct: 258 CNAIIEQFIDYLRTGQEMPTEPSDLNSVLGEVIAAESGYERVIETDLCAGEVLVDIHPLS 317

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  E    F   V G+
Sbjct: 318 IKRALANMVVNAARYGNGWIKVSSGTELQ--RAWFQVEDDGPGIKPEELKHLFQPFVRGD 375

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A + 
Sbjct: 376 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 418


>gi|227884330|ref|ZP_04002135.1| histidine kinase [Escherichia coli 83972]
 gi|300989942|ref|ZP_07179018.1| histidine kinase KdpD [Escherichia coli MS 45-1]
 gi|301046026|ref|ZP_07193207.1| histidine kinase KdpD [Escherichia coli MS 185-1]
 gi|227838416|gb|EEJ48882.1| histidine kinase [Escherichia coli 83972]
 gi|300301999|gb|EFJ58384.1| histidine kinase KdpD [Escherichia coli MS 185-1]
 gi|300407217|gb|EFJ90755.1| histidine kinase KdpD [Escherichia coli MS 45-1]
 gi|307552554|gb|ADN45329.1| sensor protein KdpD [Escherichia coli ABU 83972]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|209967043|ref|YP_002299958.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
 gi|209960509|gb|ACJ01146.1| histidine protein kinase DivJ (or putative bacteriophytochrome)
           [Rhodospirillum centenum SW]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 61/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           +       +S+M+      +   H++ +P+ AI    E++         +    +     
Sbjct: 648 LMAARQQAISAMEQQRKFIAAASHELRTPLNAIIGFSEMIQMQTFGPVGDTRYQEYATDI 707

Query: 57  SMSAIIRLKFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
             +    L  +                    V     +    +++ED         V   
Sbjct: 708 LNAGRHLLDLINDILTLGRMQPGAAAAADAPVCLNDEIRQALRMVEDQARARSIAVVWEE 767

Query: 106 GEKI----DLSRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARF 160
                     +R   +ILLNL   A    P GG+V++        +    +   G     
Sbjct: 768 PPYRILLDMEARAVRQILLNLLSNAVKFTPPGGQVSVVLGGHDGEDLWLEISDTGIGIAE 827

Query: 161 PEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +                 + +   +    V  L   +  R+           L   L 
Sbjct: 828 ADMEHVFEPFFRAGNVYTRSTEGTGLGLSIVRALMEAHGGRVSLRSRYGQGTTLRITLP 886


>gi|307151767|ref|YP_003887151.1| histidine kinase [Cyanothece sp. PCC 7822]
 gi|306981995|gb|ADN13876.1| histidine kinase [Cyanothece sp. PCC 7822]
          Length = 393

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 81/241 (33%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K     +  +     + + + HD+ SP+ A   ++E L+    + + ++  +L     
Sbjct: 151 LKKEKEELVEQIKFKDQVLAMLAHDLRSPLTAASIAIETLELANNQPDRVRSAQLKEQLY 210

Query: 61  IIRLKFMRLAF-------------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
               K  R+                      Y+      + L  +EQ+ + F     +++
Sbjct: 211 QQARKQFRIMNRLITDILQASKSMSAELQLQYSHLYLQSLCLEVLEQMADQFQEKHLKIE 270

Query: 102 VSWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNL 157
                +  ++  +     ++++NL   A    P  G +T+S+   +  +   S+   G  
Sbjct: 271 KDIPQDLPNVYGDEELIRQVIVNLLDNAIKYTPEQGTITVSILHRTTQKVQVSVCDTGPG 330

Query: 158 ARFPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               EK  +I +G+         + + +       +   +  ++  +   +        L
Sbjct: 331 I-PQEKQERIFEGHFRLKRDEGKEGYGLGLSLCRKIIRAHYGQIWVDSTVNQGSCFHFTL 389

Query: 214 E 214
            
Sbjct: 390 P 390


>gi|253701720|ref|YP_003022909.1| histidine kinase [Geobacter sp. M21]
 gi|251776570|gb|ACT19151.1| histidine kinase [Geobacter sp. M21]
          Length = 356

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 60/218 (27%), Gaps = 20/218 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSSMSAII------- 62
           ALL S I HD+ +P+ +I  +L  L E           +++      +            
Sbjct: 132 ALLNS-ISHDLRTPLVSIKGALSALKEQGGRLSPEARRDLLDTANDEAERLNRFVGNLLD 190

Query: 63  ---RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                            +  LIG                                  ++L
Sbjct: 191 LSRLEAGALRPRIEPCDLQELIGCAISAMESRLGDRNVSVQLPQGLTLVPLDLVLMIQVL 250

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176
           +NL   A+   P GG + ++ + +      S+   G  A   E    F +     V    
Sbjct: 251 VNLLDNANKYAPPGGSIEVAARVNGAWLTLSVADRGPGAPEAELSHIFDKFHRVQVPEKT 310

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       +   +  R++     +  + +  LL 
Sbjct: 311 GGTGLGLSICKGIVEAHGGRIVARNRPEGGLAVEILLP 348


>gi|188532466|ref|YP_001906263.1| aerobic respiration control sensor protein ArcB [Erwinia
           tasmaniensis Et1/99]
 gi|188027508|emb|CAO95355.1| Aerobic respiration control sensor protein ArcB [Erwinia
           tasmaniensis Et1/99]
          Length = 779

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 59/220 (26%), Gaps = 24/220 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTHLDPEQLKYLKTIHVSAITLGNIFNDVIEMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+   + +                Q+    + +       +IL NL 
Sbjct: 348 KVQLDNQPMDFTSFLTDLENISGLLVEPKGLRFVLEPQLPLPQKILVDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A     +G  V      S+    F ++ +G      E+                    
Sbjct: 408 GNAVKFTQQGEIVVRVGYQSEECLRFDVQDSGIGIPQDEQDKIFAMYYQVKDRHGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL--EK 215
              I       LA      +            S  L   +
Sbjct: 468 GTGIGLAVSRRLAQSMGGDISVTGAPGEGSCFSLTLNAPR 507


>gi|162450130|ref|YP_001612497.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161160712|emb|CAN92017.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 1850

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 18/234 (7%), Positives = 50/234 (21%), Gaps = 22/234 (9%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------- 54
             +       ++ L     S   H++ +P+ ++  +++ L +       ++ +R       
Sbjct: 1607 RRARTAAEEAVHLRDEFLSIASHELRTPLTSLQLAIQSLGQRLARGMDVERVRSAVALSG 1666

Query: 55   LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                     +  +                       +  +                V+  
Sbjct: 1667 RQVKRLTDLVDMLLDASRIQAGRLELYTAPVELRALVDEVVAHLGDQIAQSGSAVAVRAE 1726

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---F 160
                         +++ NL   A     R        +        S+   G        
Sbjct: 1727 QPVIGRWDPHRLEQVVTNLLTNAIKFGERQPIDIAITRG-DRIARLSVTDRGIGIPAEVQ 1785

Query: 161  PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + F +   G          +  Y    +   +  R+               L 
Sbjct: 1786 AQLFERFRRGVSSKNYGGLGLGLYITRTIVEAHGGRIRVSSEVGRGSTFCVELP 1839


>gi|119486508|ref|ZP_01620566.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
 gi|119456410|gb|EAW37541.1| Multi-sensor Hybrid Histidine Kinase [Lyngbya sp. PCC 8106]
          Length = 1837

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 66/241 (27%), Gaps = 29/241 (12%)

Query: 1    MAKNICFNLSSMDLVA-----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            +A+       +    A        + + H++ SP+  I     LL    ++D+V      
Sbjct: 1449 LARERSAREEAE--AANRIKDEFLAVLSHELRSPLNPILGWANLLQRQKVDDQVFHQALT 1506

Query: 56   SSMSAIIRLKFMRLAF-------------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            +    +     +                   +     ++ L  IE V     A    ++ 
Sbjct: 1507 TIERNVKLQVQLIDDLLDVSRILRGKLKLNRSSVDLVVVILSAIETVRLAAEAKSIEIRT 1566

Query: 103  SWTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                +   +  +     +I+ NL          GG+V I ++   NE    ++  G    
Sbjct: 1567 HLDTQVGKVLGDAGRLQQIVWNLLSNGVKFSETGGQVDIYLESVGNEAQIRVQDRGKGIN 1626

Query: 160  FPEK-----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALL 213
                     + +  DG          +    V  +   +   +  E          +  L
Sbjct: 1627 PKFLPYVFDYFRQEDGTTTRKFGGLGLGLAIVHYITEMHGGTVQAESPGVGKGATFTVKL 1686

Query: 214  E 214
             
Sbjct: 1687 P 1687


>gi|85857962|ref|YP_460164.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85721053|gb|ABC75996.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 718

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 65/249 (26%), Gaps = 37/249 (14%)

Query: 2   AKNICFNLS-SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVM 50
            K +   L  +  + AL  +   + HD+ + +G +    ELL      D         ++
Sbjct: 329 QKRLEERLHRAEKMEALGVMAGGVAHDLNNILGVLVGYSELLLLKMPADSPYRGHIANIL 388

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---- 106
           +  + S+      L   R     +  ++    + D     E  +       V++      
Sbjct: 389 ESGKKSAAIIQDLLALTRREVAASKVINLNRVVRDYLNTPEFEMLQSLYPGVTFRTDLNP 448

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRG--------------GKVTISVQDSKNENIF 149
                        K+++NL   A  +                                + 
Sbjct: 449 DLLNMNGSPVHLGKMVMNLVSNAVEASCERGEVTSRTENRYLDAPVSGYDDMKEGEHVVL 508

Query: 150 SLKINGNLARFPEKFTQIVDGNVESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDH 205
           ++   G      +   +I +      +    +   +    V  +  ++   +     +  
Sbjct: 509 AVSDQGKGIAAEDIG-RIFEPFYTKKVMGRRNGTGLGLAVVWGVVKDHGGYIDVRSTEGE 567

Query: 206 NVVLSALLE 214
             V +    
Sbjct: 568 GTVFTLYFP 576


>gi|116750316|ref|YP_847003.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116699380|gb|ABK18568.1| multi-sensor signal transduction histidine kinase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 615

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 20/229 (8%), Positives = 56/229 (24%), Gaps = 27/229 (11%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKF 66
             +     + + H++ +P+ +I    E L      +  +    +Q++  ++   +  ++ 
Sbjct: 369 EKVRQDFVANVSHELRTPLTSIKGYTETLLAEDRVDPHMLSSFLQIVLKNTNHVVKIVED 428

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ------------VSWTGEKIDLSRE 114
           +               +                 Q                        +
Sbjct: 429 LLQLARLEAQQKPPNAVPVNAANALTAAWKACAHQAESKRVRLESTLPEGGVWVCADFDQ 488

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++  NL   A    P G  VT+S +  + +    ++  G          +I +     
Sbjct: 489 LVQVFRNLLENAIRYSPEGEAVTVSHEARREKVTLMVRDEGPGIPGAH-QQRIFERFYRV 547

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV---LSALLE 214
                    S  +       +      R+  +  +            L 
Sbjct: 548 EKHRSDNWGSTGLGLAICRHILRNLGGRIRVQSPNTGGTTGTAFLFTLP 596


>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
 gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
            MMB-1]
          Length = 2241

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/251 (10%), Positives = 63/251 (25%), Gaps = 38/251 (15%)

Query: 1    MAKNICFNLSSMDLVALLC-----------SRICHDIISPIGAIHNSLEL-------LDE 42
            + K +      +++  +L            + + H+I +P+ AI     L       LD+
Sbjct: 1490 LEKRVTDRTEELNVAKVLAEEANRAKSLFLATMSHEIRTPMNAIIGLSRLTLKTPLNLDQ 1549

Query: 43   VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI-------- 94
                D++++            L + ++         +   L  +   I            
Sbjct: 1550 KDFMDKILESAEGLLGIINDILDYSKIEAHKMVLEQTRFELQSVMSRIVTICALKAKEKA 1609

Query: 95   -AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIF 149
              +   +        +       +IL NL   A     +G           Q+   +  F
Sbjct: 1610 LELHVDIDSDVPALLLGDPLRLQQILTNLVSNAIKFTEKGFVGIRVSLEQTQEGTPQVRF 1669

Query: 150  SLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIID 203
             +  +G      E   ++          +        +       L    K ++      
Sbjct: 1670 DVTDSGVGL-TQEHQRELFKPFTQADASITRKYGGTGLGLAICRQLVELMKGQIWVRSHL 1728

Query: 204  DHNVVLSALLE 214
                     + 
Sbjct: 1729 GKGSTFGFRIP 1739


>gi|315299203|gb|EFU58457.1| histidine kinase KdpD [Escherichia coli MS 16-3]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPAP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|302060794|ref|ZP_07252335.1| bacteriophytochrome, putative [Pseudomonas syringae pv. tomato K40]
          Length = 1003

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 72/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    ++D   +         
Sbjct: 528 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAVDDTNFENRNIRRALG 587

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 588 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLALSVTSLLEEACSLLVMLTTEKNIELNC 647

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I      ++ +F +  +G     
Sbjct: 648 TSAQGLVIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADGDDVLFRVSDDGIGIPA 707

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  +   D   V S  L 
Sbjct: 708 QHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWADSSLDSGSVFSFTLP 763


>gi|293418794|ref|ZP_06661229.1| two-component system [Escherichia coli B088]
 gi|300824874|ref|ZP_07104976.1| histidine kinase KdpD [Escherichia coli MS 119-7]
 gi|331667043|ref|ZP_08367917.1| sensor protein KdpD [Escherichia coli TA271]
 gi|331676349|ref|ZP_08377061.1| sensor protein KdpD [Escherichia coli H591]
 gi|291325322|gb|EFE64737.1| two-component system [Escherichia coli B088]
 gi|300522648|gb|EFK43717.1| histidine kinase KdpD [Escherichia coli MS 119-7]
 gi|323945073|gb|EGB41136.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Escherichia coli H120]
 gi|331066267|gb|EGI38151.1| sensor protein KdpD [Escherichia coli TA271]
 gi|331076407|gb|EGI47689.1| sensor protein KdpD [Escherichia coli H591]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|262171335|ref|ZP_06039013.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
 gi|261892411|gb|EEY38397.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus MB-451]
          Length = 1163

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++    L +++      + + H++ +PI A+   +E+L      +E   L+  +  SA
Sbjct: 624 LRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSNESQLLLTNAITSA 683

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRER-- 115
                 +     ++      + L      + D +              G    ++ +   
Sbjct: 684 ERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDFIVNWQPDA 743

Query: 116 -----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I+ NL   A     +G       Q  +    F +   G     P+  
Sbjct: 744 RLLVQVDALRLNQIITNLLSNALKFTEKGSIRICVEQS-EQHFTFEVTDTGCGMTEPQIA 802

Query: 165 TQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          ++        +    V  L       +  E   D    +   L 
Sbjct: 803 SIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRVSLP 857


>gi|260220463|emb|CBA28026.1| hypothetical protein Csp_A05220 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 735

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 65/249 (26%), Gaps = 36/249 (14%)

Query: 1   MAKNICFNLS-----SMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---- 49
           +A+     L      S  + A+  +   I HD  + + AI  +++L  +           
Sbjct: 341 LAEAQRIALETQLRESQKMQAMGTMAGGIAHDFNNILSAILGNVDLAKQDTPTGSSALVS 400

Query: 50  MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +  I  +   A   ++ +             I L ++    +  + V     V +     
Sbjct: 401 LVEIEKAGRRARDLVRQILTFSRNEPPKRVPIQLAEVIHETQRLVRVAIPPGVDFKLVVA 460

Query: 110 DLSR-------ERAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNEN 147
           +          +  + LLNL   A  +L                                
Sbjct: 461 EGCPLVLADATQVEQALLNLCTNAILALGHNKGSVTIELGTTTLSLPFNDRIGVPPGRYV 520

Query: 148 IFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDH 205
              ++  G+         +I +    +        +    V  +   ++  +  +   + 
Sbjct: 521 TLRVRDTGSGMSQQTI-ERIFEPFFTTRQVGQGTGLGLAVVHGIMQTHQGGIDVQSAPNE 579

Query: 206 NVVLSALLE 214
             V +    
Sbjct: 580 GSVFTLYFP 588


>gi|218688499|ref|YP_002396711.1| sensor protein KdpD [Escherichia coli ED1a]
 gi|218426063|emb|CAR06880.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein ; sensory histidine
           kinase [Escherichia coli ED1a]
 gi|222032442|emb|CAP75181.1| Sensor protein kdpD [Escherichia coli LF82]
 gi|312945230|gb|ADR26057.1| sensor protein KdpD [Escherichia coli O83:H1 str. NRG 857C]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|154502607|ref|ZP_02039667.1| hypothetical protein RUMGNA_00420 [Ruminococcus gnavus ATCC 29149]
 gi|153796799|gb|EDN79219.1| hypothetical protein RUMGNA_00420 [Ruminococcus gnavus ATCC 29149]
          Length = 361

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 58/219 (26%), Gaps = 18/219 (8%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--- 70
           L     S + H++ +P+  I N  ELL    + +E  +    +  +   RL  +      
Sbjct: 134 LKTDFVSNVSHEMKTPLSIIKNYAELLQRDALSEEQRREYGEAIENTATRLSDLISNILK 193

Query: 71  -----FGYTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAKI 118
                         +  +               +   ++  V++    E          +
Sbjct: 194 LNKLENQKIQPEAEVYDVCRQLCDCILQYESAWEKKEIEMEVEMEDRAEIYADQDLMELV 253

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVEST 175
             NL   A      GG +T+     +     S+   G           F +   G+   +
Sbjct: 254 WNNLLSNAVKFTELGGVITVRQLSDEQGVTISVSDTGCGMSKNTMKHIFDKFYQGDTSHS 313

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + + +    V  +       +     +         L 
Sbjct: 314 KEGNGLGMAMVKRVLELMDGEIQVLSEEKQGSTFIVTLP 352


>gi|197118798|ref|YP_002139225.1| PAC domain-containing sensor histidine kinase response regulator
           [Geobacter bemidjiensis Bem]
 gi|197088158|gb|ACH39429.1| sensor histidine kinase response regulator, PAC domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 1023

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
           +    ++  ++ + +L   I HD  + +  +  + +L    L E     E +Q I  ++ 
Sbjct: 630 QAQMLHVQKLESLGVLAGGIAHDFNNILMVVLGNADLALMRLPEGTPVRENLQQIEQAAS 689

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    + M             +D    + ++ Q++E  I+   ++   +  +   +S +
Sbjct: 690 RAADLAQQMLAYSGRGNFVIQKLDLAQTVKEMAQMLEISISKKTQLHYDFAPDLPAISGD 749

Query: 115 RAKILLNLFMVAHASLPRG----------------------GKVTISVQDSKNENIFSLK 152
             ++   +  +   +                                        +  + 
Sbjct: 750 ATQLRQVILNLVLNASEAIGDNIGVIAIRTGYLECDRAYLSETWIDDRLPEGPYLMLEIS 809

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            NG      E   +I D    +      +    V+ +   +   +     +        L
Sbjct: 810 DNGCGI-KKEIIPKIFDPFFTTKFTGRGLGMAAVLGIVRSHNGAIKIYSEEGKGSTFRLL 868

Query: 213 LE 214
           L 
Sbjct: 869 LP 870


>gi|187923308|ref|YP_001894950.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia phytofirmans PsJN]
 gi|187714502|gb|ACD15726.1| osmosensitive K+ channel signal transduction histidine kinase
           [Burkholderia phytofirmans PsJN]
          Length = 944

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++   N+ S  L   L S I HD+ +P+  I     +L +        +L+      A+
Sbjct: 668 ARDALVNMESERLRNSLLSAISHDLRTPLTTIVGFSSMLAQAPDAQPNGELVEAIHEEAL 727

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------------- 108
                +             + L     ++E+ +    R                      
Sbjct: 728 RMTGIVTNLLDMARLQAGSLQLNQQWTLLEETVGAALRACKRVLTNHPVRVKLPADLPLL 787

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA---RFP 161
              +    ++  NLF  A         +TI  Q       +    ++  +G         
Sbjct: 788 HLDAVLMERLFSNLFENAAKYTAPATPLTIGAQRLDADGKSFVRVTVDDSGPGLPAGMEA 847

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLP---EIIDD--HNVVLSALLE 214
             F +   G  ES      +       +   +   +        D           L 
Sbjct: 848 RVFEKFTRGEKESAKPGIGLGLAICRAIVEAHGGTIGALNRMSADGRVEGARFWFTLP 905


>gi|160878901|ref|YP_001557869.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
 gi|160427567|gb|ABX41130.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium phytofermentans ISDg]
          Length = 342

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 60/233 (25%), Gaps = 22/233 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHN----SLEL---LDEVGIEDEVMQLIRL 55
           + +  +     + A L   I HD+ +P+  +       +E+   L E   ++ ++ +   
Sbjct: 109 QRLNADAEKEKMRANLLRAISHDLRTPLTGMIGASATYIEMKDNLTEEEKDELILHIHED 168

Query: 56  SSMSAI---------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           S+                         +  V+ ++    +        A           
Sbjct: 169 SNWLLHMVENLLSVTRIHSNNTTVTKVSEPVEEVVSEAVMRLKKRYPNAKILVKTPDEFL 228

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                +    ++++NL   A+        + ++V    N   FS+   G        +  
Sbjct: 229 MVPMDATLIEQVMINLLENAYKYSKSKKPIELTVTKEPNFVRFSIMDYGVGINKDTIYNF 288

Query: 167 IVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +     I       +   +   +      +     +  L 
Sbjct: 289 FEGNTATKNTSSDSTKGMGIGLSICKTIIRAHGGVIEASNHSN-GASFTFTLP 340


>gi|71909326|ref|YP_286913.1| PAS [Dechloromonas aromatica RCB]
 gi|71848947|gb|AAZ48443.1| PAS protein [Dechloromonas aromatica RCB]
          Length = 1028

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 58/241 (24%), Gaps = 32/241 (13%)

Query: 2   AKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
            + +     + +       A L   + H+I +P+ A+   + LL       E +  +   
Sbjct: 639 TEQLEIARQAAEAANRSKSAFLA-NMSHEIRTPLNAVLGMVHLLRRDAPTLEQIDRLDKI 697

Query: 57  SMSAIIRLKFMRLAFGYTGS-----------VDSLIGLGDIEQVIEDFIAVD----KRVQ 101
             ++   L  +      +             VD    L  +  V+ D         + + 
Sbjct: 698 DSASQHLLAVINDILDISKIEAGKLVLDETTVDITSILKRVVSVLGDRARQKGLELRVLA 757

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNL 157
             +    I       + L+N    A      G        ++   +     F ++  G  
Sbjct: 758 DDFPHTFIGDPTRITQCLINYAGNAVKFTEHGSITLKARRMADDSNGVLIRFEVEDTGIG 817

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +   ++                   +       LA     ++              
Sbjct: 818 I-SDDAIDRLFGIFEQADSSTSRKFGGTGLGLAITRRLAELMGGKVGVSSRVGAGSRFWF 876

Query: 212 L 212
            
Sbjct: 877 T 877


>gi|15800396|ref|NP_286408.1| sensor protein KdpD [Escherichia coli O157:H7 EDL933]
 gi|15829977|ref|NP_308750.1| sensor protein KdpD [Escherichia coli O157:H7 str. Sakai]
 gi|168750625|ref|ZP_02775647.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4113]
 gi|168757146|ref|ZP_02782153.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4401]
 gi|168764937|ref|ZP_02789944.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4501]
 gi|168767134|ref|ZP_02792141.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4486]
 gi|168777019|ref|ZP_02802026.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4196]
 gi|168779178|ref|ZP_02804185.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4076]
 gi|168786847|ref|ZP_02811854.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC869]
 gi|168802542|ref|ZP_02827549.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC508]
 gi|195939039|ref|ZP_03084421.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4024]
 gi|208807752|ref|ZP_03250089.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4206]
 gi|208815717|ref|ZP_03256896.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4045]
 gi|208822877|ref|ZP_03263195.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4042]
 gi|209397561|ref|YP_002269321.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4115]
 gi|217325999|ref|ZP_03442083.1| sensor protein KdpD [Escherichia coli O157:H7 str. TW14588]
 gi|254791845|ref|YP_003076682.1| sensor protein KdpD [Escherichia coli O157:H7 str. TW14359]
 gi|261224151|ref|ZP_05938432.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257845|ref|ZP_05950378.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Escherichia coli O157:H7 str. FRIK966]
 gi|12513598|gb|AAG55016.1|AE005247_7 sensor for high-affinity potassium transport system [Escherichia
           coli O157:H7 str. EDL933]
 gi|13360181|dbj|BAB34146.1| sensor for high-affinity potassium transport system [Escherichia
           coli O157:H7 str. Sakai]
 gi|187767646|gb|EDU31490.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4196]
 gi|188015208|gb|EDU53330.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4113]
 gi|189002898|gb|EDU71884.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4076]
 gi|189355775|gb|EDU74194.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4401]
 gi|189363335|gb|EDU81754.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4486]
 gi|189365153|gb|EDU83569.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4501]
 gi|189372997|gb|EDU91413.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC869]
 gi|189375487|gb|EDU93903.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC508]
 gi|208727553|gb|EDZ77154.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4206]
 gi|208732365|gb|EDZ81053.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4045]
 gi|208737070|gb|EDZ84754.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4042]
 gi|209158961|gb|ACI36394.1| sensor protein KdpD [Escherichia coli O157:H7 str. EC4115]
 gi|209776670|gb|ACI86647.1| sensor for high-affinity potassium transport system [Escherichia
           coli]
 gi|209776672|gb|ACI86648.1| sensor for high-affinity potassium transport system [Escherichia
           coli]
 gi|209776676|gb|ACI86650.1| sensor for high-affinity potassium transport system [Escherichia
           coli]
 gi|217322220|gb|EEC30644.1| sensor protein KdpD [Escherichia coli O157:H7 str. TW14588]
 gi|254591245|gb|ACT70606.1| sensory histidine kinase in two-component regulatory system with
           KdpE [Escherichia coli O157:H7 str. TW14359]
 gi|320193093|gb|EFW67733.1| Osmosensitive K+ channel histidine kinase KdpD [Escherichia coli
           O157:H7 str. EC1212]
 gi|326341437|gb|EGD65229.1| Osmosensitive K+ channel histidine kinase KdpD [Escherichia coli
           O157:H7 str. 1044]
 gi|326345782|gb|EGD69521.1| Osmosensitive K+ channel histidine kinase KdpD [Escherichia coli
           O157:H7 str. 1125]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|191174053|ref|ZP_03035569.1| sensor protein KdpD [Escherichia coli F11]
 gi|215485724|ref|YP_002328155.1| sensor protein KdpD [Escherichia coli O127:H6 str. E2348/69]
 gi|190905661|gb|EDV65284.1| sensor protein KdpD [Escherichia coli F11]
 gi|215263796|emb|CAS08132.1| fused sensory histidine kinase KdpD in two-component regulatory
           system with KdpE signal sensing protein [Escherichia
           coli O127:H6 str. E2348/69]
 gi|324010424|gb|EGB79643.1| histidine kinase KdpD [Escherichia coli MS 60-1]
          Length = 894

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|134291128|ref|YP_001114897.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
 gi|134134317|gb|ABO58642.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia vietnamiensis
           G4]
          Length = 766

 Score =  108 bits (269), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 60/226 (26%), Gaps = 23/226 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA 70
           S  L   L + + H++ +P+  I+  +E+L     +    Q I     SA    + +   
Sbjct: 391 SNRLKDELLATVSHELRTPLNVIYGWVEVLRSASDDALQQQAIDAIDRSAHSLTRMVGDI 450

Query: 71  -----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-----RE 114
                            VD +  L           A    + + +               
Sbjct: 451 LDASSLATGKLRLDAMPVDVVR-LFADATSAFQTAASAAGIALEFDCTASACVVSGDAER 509

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
             ++L NL   A    P GG VT+++       + ++   G                   
Sbjct: 510 LRQMLSNLVSNALKFTPAGGAVTVTLTHDAAHAVLAVGDTGQGIASEFIPYVFDMFRRAD 569

Query: 175 TID-----SHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
                      +    V  +A  +   +  +    +     +  L 
Sbjct: 570 GSPASPRRGLGLGLSIVRHIAELHGGEVRVDSAGRNRGATFTVTLP 615


>gi|332706978|ref|ZP_08427038.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
 gi|332354243|gb|EGJ33723.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
          Length = 779

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 62/231 (26%), Gaps = 33/231 (14%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEV------------GIEDEVMQLIRLSSMSAIIR 63
           +   + + H++ +P+  +      L                 +   ++ I+ +    +  
Sbjct: 402 SEFLATMSHELRTPLTCVIGMAATLLRWCFGQDSSQRLPVEKQQRYLKTIQENGQHLLEL 461

Query: 64  LKF-----------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +             + L             L            V  ++      E+   S
Sbjct: 462 INDILDLSQVEAGKLVLTISKFSLSKLANQLLSSLNEQAYQQQVTLQLDWRVPPERDCFS 521

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK------ 163
            ++ ++   LF          P GGKV + V    +  +F ++  G      +       
Sbjct: 522 ADQRRVKQILFNLLSNGIKFTPEGGKVILRVWPENHLVVFQVEDTGIGIAQDQLPLLFQK 581

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F Q+         +   +       L   ++ ++  E +       +  L 
Sbjct: 582 FQQLETPY-RRKYEGTGLGLALTKQLIELHRGKIEVESVVAEGSCFTVWLP 631


>gi|327470095|gb|EGF15559.1| sensor histidine kinase [Streptococcus sanguinis SK330]
          Length = 344

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 78/236 (33%), Gaps = 23/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +       S     ++ +++ HDI +PI +I  ++E + +       +   +  I   
Sbjct: 106 LQETFESLDESEREKGMMIAQLSHDIKTPITSIQATVEGILDGVIEEEEQIHYLTTISRQ 165

Query: 57  SMSAIIRLKFMRLAFGYTGSV-------------DSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +      ++ + +                       LI +    Q++ +    D  +QVS
Sbjct: 166 TEHLNKLVEELDVLALNAQPRIESDGEAEIVFLDQLLIEVMSEFQLLIEREERDIYIQVS 225

Query: 104 WTGEKIDLSRER-AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
               KI    ++ ++IL+NL   A      G K+ I  Q +      S+K  G      +
Sbjct: 226 PESAKIKSHYDKLSRILVNLINNAFKYSDPGTKIEIEAQLTDQILTISVKDEGRGIAPED 285

Query: 163 ---KFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
               F ++             H +       LAH+    ++ E         +  L
Sbjct: 286 LDKIFKRLYRVETSRNMKTGGHGLGLAIARELAHQLGGEIMVESQCGLGSTFTFTL 341


>gi|260461913|ref|ZP_05810158.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
 gi|259032160|gb|EEW33426.1| histidine kinase [Mesorhizobium opportunistum WSM2075]
          Length = 409

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 66/239 (27%), Gaps = 30/239 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++    +    + A   +   H++ +P+ +I   +E L      +    ++ +Q+++  +
Sbjct: 172 QSETRRID--RMRADFIANASHELRTPLASISGFIETLRGPARNDPAAREQFLQIMQNQT 229

Query: 58  MSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWT 105
                 +  +        +        VD    +  +   +      +  V         
Sbjct: 230 GRMARLIDDLLSLSRLEMKPYLKPGTEVDLRQTVDSVIDSLAPLARENNVVIERDFADGP 289

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVT----ISVQDSKNENIFSLKINGNLARFP 161
            +      E  ++  NL   A      GG+V          S+     +++  G      
Sbjct: 290 LDVPGDRDELFQVFENLLENACKYGQSGGRVVVSIAPGDDGSEPGIDVTIRDFGPGI-PE 348

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +           T     +    V  +   +  RL            S  L 
Sbjct: 349 EHIPRITERFYRIDVETSRTQKGTGLGLSIVKHILTRHNARLTIRSEVGKGAAFSVHLP 407


>gi|229836456|ref|ZP_04456623.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis Pestoides A]
 gi|229706524|gb|EEO92531.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis Pestoides A]
          Length = 851

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 64/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
            K +   L     M  V  L   + HD  + +  I  SLEL      +       ++   
Sbjct: 482 RKALEEALVHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTATDSSDATRIHRALKAAE 541

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +      L F R    +  +V     L +++ +I   +     + +           +
Sbjct: 542 RGAQLTQRLLAFSRKQSLHPRAVAMKELLDNLDPLIRHSLPAHLTLTIEAQQPAWHAWID 601

Query: 115 RAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++   +      A  ++              +V       +   +  +  +G+     
Sbjct: 602 VNQLENAIINLVMNARDAMEGRSGEIKIRTWNQRVERGEGRKQYMVVLEVADSGHGMTTA 661

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 662 -VKEQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVQIESEPGKGTRVCLQLPR 716


>gi|229028364|ref|ZP_04184488.1| hypothetical protein bcere0028_4840 [Bacillus cereus AH1271]
 gi|228732912|gb|EEL83770.1| hypothetical protein bcere0028_4840 [Bacillus cereus AH1271]
          Length = 372

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 65/219 (29%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 150 QFVSDASHELRTPLAVIQSKTDILFQSPSATIEEKAMDISTISKECRRLSKLVANLLLLA 209

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + D  + I  +   +  ++V      +       ++++
Sbjct: 210 RSDSNQIEMDKKTFEMDTLLEEIVDPYKEIASYQEKEMILKVEHGMSFMGDRERIHQMMV 269

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTI- 176
            L   A      GG + I    + +     +K +G   +  +    F +   G+   ++ 
Sbjct: 270 ILLDNAMKYTNEGGHIQIDCTQTNSSIRIRVKDDGIGVKDEDIPKLFNRFYQGDKARSVS 329

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +L K
Sbjct: 330 EGAGLGLSIANWIVEKHYGKISVESQWGEGTCFEVILPK 368


>gi|167582935|ref|ZP_02375809.1| multi-sensor hybrid histidine kinase [Burkholderia thailandensis
           TXDOH]
          Length = 986

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 62/235 (26%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----S 56
           + +       +    ++  + + H+I +P+ A+  +LEL+    + D   + + +    S
Sbjct: 490 LDEARRAADQANRSKSVFLATMSHEIRTPLNALIGNLELMKRGPLADAQRRRLEIVASTS 549

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI------------AVDKRVQVSW 104
           S    I    + L+    G +       D   ++ D               +   +    
Sbjct: 550 SALLHILNDVLDLSKVEAGQLRIDAVPFDCAVLLRDVTATFQPLATAKGLHLGCDIAPDM 609

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +I       +I+ NL   A      G     +     +     +   G         
Sbjct: 610 APLRIGDPIRIRQIVANLLGNAIKFTDTGSVTLFAAG--DDVIELRVVDTGIGISPQAVA 667

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           T        D ++        +       L +     +    +          + 
Sbjct: 668 TIFELYKQADDSIHRKYGGTGLGLALCRRLVNAMGGEIAARSVPGEGSEFRVGIP 722


>gi|149377367|ref|ZP_01895112.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
 gi|149358379|gb|EDM46856.1| Signal transduction histidine kinase [Marinobacter algicola DG893]
          Length = 1173

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 60/233 (25%), Gaps = 25/233 (10%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
                +S +  +   + + H+I +P+ AI    E L +  + +        + + +   L
Sbjct: 555 KELARNSAEAKSQFLANMSHEIRTPLAAIIGYGETLLDPDLTEREKHTSAETVVRSGRHL 614

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----------------DKRVQVSWTGE 107
             +         +D+     DI  V    +                       +     +
Sbjct: 615 LDLINDILDHSKIDANKLDVDIVSVNLPELLDEIRAFFAPRAREKGLAFHIICEYPLPEK 674

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNLARFPEKFTQ 166
                    +I++NL   A     +G        D + +  +  +   G     PE+  +
Sbjct: 675 ISTDPTRFRQIIINLCGNALKFTEKGSISLNVRCDRQRQALVARVVDTGIGM-KPEQLGR 733

Query: 167 IVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           + D        +        +       LA      +               +
Sbjct: 734 LFDPFAQGSAAIARQYGGTGLGLSISRRLAELLGGNISVTSTYGEGSEFELSI 786


>gi|148976729|ref|ZP_01813401.1| sensor protein TorS [Vibrionales bacterium SWAT-3]
 gi|145963842|gb|EDK29101.1| sensor protein TorS [Vibrionales bacterium SWAT-3]
          Length = 1004

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 64/235 (27%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A++     S      L  + + H+I +P+  +  +  LL + G+         + + S  
Sbjct: 459 ARSAAEQASRAKSAFL--ATMSHEIRTPMNGVLGTARLLKDTGLNPLQSGYADIINRSGK 516

Query: 62  IRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWT 105
             L  +     Y+            S D    + D  Q++E   A         ++    
Sbjct: 517 NLLAILNDVLDYSKIEAGHLEIRIASFDLHQMVQDTYQLMEGRAAEKKLGFSYHIESDVQ 576

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFPEK 163
                     ++IL NL   A     +G          + +N  +F +   G      E+
Sbjct: 577 RYWRGDVTRISQILNNLVGNAIKFTDKGDVDIFISLDLEDENRVMFEVSDTGVGIHESEQ 636

Query: 164 FTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  ++         +       +       +     +         L 
Sbjct: 637 KCLFDAFSQTNSGRNTTGGTGLGLAISKRIMLAMDGDIGVHSEEGEGSQFWFSLP 691


>gi|146297994|ref|YP_001192585.1| histidine kinase [Flavobacterium johnsoniae UW101]
 gi|146152412|gb|ABQ03266.1| multi-sensor hybrid histidine kinase [Flavobacterium johnsoniae
           UW101]
          Length = 724

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 64/238 (26%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +AKN      +    +   S + H++ +P+ AI+    LL E   +   ++ +     S 
Sbjct: 347 LAKNKAEK--ASKARSEFLSTVSHELRTPLNAINGITHLLLEDNPKKAQLKYLESLKFSG 404

Query: 61  IIRLKFMRLA--------------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--W 104
                F+                        + L  +    + +         +++    
Sbjct: 405 NYLTTFINEILEINKIDSTKVEVENISFNLKELLFNIQSSLKELATANKNYFNLEIDKAI 464

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARF 160
               I    + ++I+LNL   A      G    I+   ++ +      F +   G     
Sbjct: 465 PDILIGDPTKLSQIILNLINNALKFTQNGQVSVIAKLFAEEDENATVYFEIVDTGIGIPE 524

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +  T     +              +    V  L       +  +         +  L
Sbjct: 525 DKLQTVFESFSQGSIEVNRKYGGTGLGLTIVKKLIELLGGEIKLKSEVGKGSTFTFKL 582


>gi|16759375|ref|NP_454992.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142854|ref|NP_806196.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213027063|ref|ZP_03341510.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213051514|ref|ZP_03344392.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427747|ref|ZP_03360497.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289828483|ref|ZP_06546341.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25298521|pir||AE0551 phosphate regulon sensor protein PhoR [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501666|emb|CAD08853.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138486|gb|AAO70056.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 431

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 66/215 (30%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         ++ 
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEV 268

Query: 80  LIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   E+V    +                     V  +   +    +    + NL   
Sbjct: 269 APALLLNEKVDVPMMLRVVEREAQTLSQQKHTFTFAVDDSLSVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+S + + +   F ++ NG      E   ++ +                
Sbjct: 329 AVNHTPAGTHITVSWRRAAHGAEFCIQDNGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  +         S +L 
Sbjct: 388 GLGLAIVKHALNHHESRLEIDSSPGKGTRFSFVLP 422


>gi|326938736|gb|AEA14632.1| two component system histidine kinase [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 896

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E        + ++L  +  
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 541

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+    
Sbjct: 602 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 722 EGSTFTVFIP 731


>gi|324006266|gb|EGB75485.1| histidine kinase KdpD [Escherichia coli MS 57-2]
          Length = 894

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|323702468|ref|ZP_08114132.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532607|gb|EGB22482.1| integral membrane sensor signal transduction histidine kinase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 411

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 17/216 (7%), Positives = 63/216 (29%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             +   H++ +P+  +  +LEL+          ++  ++ ++         ++ + L   
Sbjct: 193 FVADASHELRTPLAVMQTNLELVMGNPNETVADQEIWLKNVQTEISHMTRLVEDLLLLAR 252

Query: 73  YTGSVDS-----------LIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                             +  +      + +   +  R+++    E     +   ++++ 
Sbjct: 253 IDSEQQLLELSRFSLDQAIYDVIKPIIPMAETKGIKLRLEIEPQVEFNGDEKRIKQLVVI 312

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDS 178
           L   A    P GG+V + + +  +    ++   G           F +    +   +   
Sbjct: 313 LIDNAIKHTPAGGEVALKMANRGSSVEITVSDTGEGIEPEHLEKIFERFYRIDKARSKSG 372

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       +   +   +  +            L+
Sbjct: 373 TGLGLSIADWIVKSHHGSIKVKSSPGKGTTFMITLQ 408


>gi|313115312|ref|ZP_07800787.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622343|gb|EFQ05823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 360

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 64/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNS----------------LELLDEVGI 45
            + +        + A L   + HD+ +P+ +I+ +                ++LL E   
Sbjct: 112 QEQLRMESEKEKMRANLLRAVSHDLRTPLTSIYGACSTVIENYDSLDKEKTIKLLGEACS 171

Query: 46  EDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           + + +  +  + +S                 +D L+    ++          +       
Sbjct: 172 DAQWLTRMVENLLSVTRIDSEKVTVQKTPTVLDELLDTVLVKFRKRYPEIPVELETPDAF 231

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    ++L+NL   A        K+T+ V    N  +F +  NG         T
Sbjct: 232 IVIPMDSMLIQQVLMNLLENAALHAEGMTKLTLKVFTVGNRAVFEVTDNGCGIPRERLKT 291

Query: 166 QIVDGNVE-------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          S      I       +   +   +  E        +   LE
Sbjct: 292 LFSGTGGTDPDVPADSRKHGMGIGLSVCAAIIKAHGGEIKAESRLGEGTTIRFWLE 347


>gi|296186460|ref|ZP_06854863.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
 gi|296048907|gb|EFG88338.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Clostridium carboxidivorans P7]
          Length = 554

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLS 56
           +   +    L     + I H++ +P+  I  + ++LD        +   + +  + +   
Sbjct: 282 LNKAVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGLDNDNQFKTDKYLHTI 341

Query: 57  SMSAIIR----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
             ++              K     F  T S + ++ + +   +       +K +++ +  
Sbjct: 342 KQNSYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSVVEYVENKNIRLIFDT 401

Query: 106 ----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                       +  +I+LNL   A    P+ G + +++ DS ++ I S+K  G      
Sbjct: 402 EVEEKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNIYDSTDKVIISIKDTGIGIDKS 461

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +          D ++    +   I    V  L   +  ++               L 
Sbjct: 462 MQKLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVSELGEGSEFIIELP 519


>gi|281177570|dbj|BAI53900.1| two-component sensor kinase [Escherichia coli SE15]
          Length = 431

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFIIP 422


>gi|255528504|ref|ZP_05395290.1| histidine kinase [Clostridium carboxidivorans P7]
 gi|255507808|gb|EET84262.1| histidine kinase [Clostridium carboxidivorans P7]
          Length = 392

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 76/238 (31%), Gaps = 28/238 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDEVMQLIRLS 56
           +   +    L     + I H++ +P+  I  + ++LD        +   + +  + +   
Sbjct: 120 LNKAVEYEKLRTEFFANISHELRTPLNVIFCAEQMLDIIFKRIGLDNDNQFKTDKYLHTI 179

Query: 57  SMSAIIR----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
             ++              K     F  T S + ++ + +   +       +K +++ +  
Sbjct: 180 KQNSYRLLRLINNLIDITKMDAGYFEITLSNNDIVKITEDITLSVVEYVENKNIRLIFDT 239

Query: 106 ----GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                       +  +I+LNL   A    P+ G + +++ DS ++ I S+K  G      
Sbjct: 240 EVEEKIIACDPDKIERIMLNLLSNAVKFTPKNGTIYVNIYDSTDKVIISIKDTGIGIDKS 299

Query: 162 EKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +          D ++    +   I    V  L   +  ++               L 
Sbjct: 300 MQKLIFDKFVQVDKSISRRTEGSGIGLSLVKSLVEMHNGQISVVSELGEGSEFIIELP 357


>gi|253567011|ref|ZP_04844462.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
 gi|251944135|gb|EES84644.1| two-component system sensor histidine kinase [Bacteroides sp.
           3_2_5]
          Length = 1039

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 58/239 (24%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMD--------LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L+S          L +   + + H+I +P+ AI     +L     E+E  + +
Sbjct: 657 RKKMEMELTSAKDRAEESNRLKSAFLANMSHEIRTPLNAIVGFSGILASTEEEEEKQEYV 716

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------- 105
            +   +    L  +         +++         +  +         +           
Sbjct: 717 SII-ENNNALLLQLISDILDLSKIEAGTLEFQYSDIELNTELKKLESTLKLKLKSDDVQL 775

Query: 106 --------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                             +++++NL   A     RG            E  F +   G  
Sbjct: 776 EFVPGLPVCPVCTEKNRLSQLIINLVTNAIKFTSRGSIRFGYEHR-GKELYFYVTDTGCG 834

Query: 158 ARFPEKFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +K   I    V   S      +       L       +  +            L 
Sbjct: 835 I-PKDKQESIFGRFVKLNSFAQGTGLGLSICRTLVEHMGGHIGVDSEQGKGSTFWFSLP 892


>gi|218463727|ref|ZP_03503818.1| probable two-component sensor histidine kinase protein [Rhizobium
           etli Kim 5]
          Length = 945

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 57/235 (24%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLI 53
           + +       +  + +L  L + I H++  P+ A+  +       L+ E    +   + +
Sbjct: 707 LRQAREGLARASQVASLAELSASIAHEVNQPLAAVVANSHACQRWLMAEPPNMERAQRTV 766

Query: 54  RLSSM----------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                K        T     +    ++             + V 
Sbjct: 767 ERIIRDANSAADVVSRIRALFKQSADRKIQTTLSGIIEEARNLMADEAWRRRARIDLAVD 826

Query: 104 WT-GEKIDLSRERAKILLNLFMVAHASLP---RGGKVTISVQDSKNENIFSLKINGNLAR 159
                      +  ++L+NL      ++        V I      N     +   G    
Sbjct: 827 ANLPFIAIDRIQIQQVLINLIRNGIEAMDATADDRIVGIRAHQVGNLLQTEISDRGQGI- 885

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E   +I +    +      +       +   +  RL  E        L   L 
Sbjct: 886 --EFPEKIFEPFFTTKETGMGMGLAICRSIVELHGGRLWAEKNKPRGATLVFTLP 938


>gi|198274384|ref|ZP_03206916.1| hypothetical protein BACPLE_00529 [Bacteroides plebeius DSM 17135]
 gi|198272750|gb|EDY97019.1| hypothetical protein BACPLE_00529 [Bacteroides plebeius DSM 17135]
          Length = 1322

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 57/233 (24%), Gaps = 21/233 (9%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMS 59
            +       +    +     + I H+I +P+  I   LE ++    I     Q + +   +
Sbjct: 802  LNSKKEIEIHEAKI--NFFTMIAHEIRTPVSLIIGPLEKIMQSTHIPINERQELEIIDRN 859

Query: 60   AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV---------------QVSW 104
            +   L  +     +       I +    Q I++ +                         
Sbjct: 860  SQRLLYLVNQLLDFRKVEQKEIRMKFTSQSIKELMQAVCERFSPTLQQNGVSFSVTYPDE 919

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                        K+L NL   A+       +V       +      +K NG      E  
Sbjct: 920  HFHADVDKEALTKVLSNLLTNANKYTQSMIEVRFQEHPERQTFSIEVKDNGKGMNEEELK 979

Query: 165  TQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +I               I    V  +   +  ++               L +
Sbjct: 980  -KIFKPFYQASENKPGTGIGLSIVKGIVEAHHGQVNVTSQPGKGSSFIITLPR 1031


>gi|197104499|ref|YP_002129876.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477919|gb|ACG77447.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 833

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 57/210 (27%), Gaps = 20/210 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSSMSAIIRLK----------- 65
           + + H+I +P+ +I      LDE             +  +S + +  +            
Sbjct: 462 ANMSHEIRTPLTSILGFASFLDELKLPEPAGGYAAKVTTASRTLLAIVNDVLDFSKLEAG 521

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            + +    T   +    + D+         ++  ++ +     +  +    ++L+NL   
Sbjct: 522 RLEMKPRPTDPAECARDVLDLFGPQAQAKGLELVLEPAAPAVAMIDADRLRQVLMNLVGN 581

Query: 126 AHASLPRGGKV-TISVQDSKNENIFSLKINGNLA---RFPEKFTQIVD--GNVESTIDSH 179
           A      G    + +   ++      +   G         + F +     G+        
Sbjct: 582 AVKFTQSGSVRLSCAYDPAERRLTCKVADTGPGIGAAAMEKLFQRFSQVDGSTTRAHGGT 641

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            +       L      R+  E         
Sbjct: 642 GLGLAISKGLVEAMGGRIGVESAPGRGSTF 671


>gi|197124634|ref|YP_002136585.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
 gi|196174483|gb|ACG75456.1| GAF sensor hybrid histidine kinase [Anaeromyxobacter sp. K]
          Length = 1843

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 61/240 (25%), Gaps = 28/240 (11%)

Query: 3    KNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRL 55
            +++      + L++       + + H++ +P+ ++    ++L    +  +  E ++    
Sbjct: 1434 RSLEEKAEQLQLISRYKSEFLANMSHELRTPLNSLLILSKMLAENRDGNLTPEQVKFAST 1493

Query: 56   SSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
               S                       +        SV   +            +    R
Sbjct: 1494 VYTSGHELLGLINEILDLSKIEAGKMPIEPRDTRLESVRDDLEQTFRHVAEHKGLGFQVR 1553

Query: 100  VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +                +IL NL   A     RG  V      +     F+++  G    
Sbjct: 1554 MGPDLPERIHTDPTRLLQILKNLISNAFKFTERGEVVLDVGPAAGGALAFAVRDTGIGIP 1613

Query: 160  FP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +  Q  DG          +       +A      +  +       V + +L 
Sbjct: 1614 ADKQKLIFEAFQQADGTTSRKYGGTGLGLTISREIARLLGGSIEVKSAPGRGSVFTLVLP 1673


>gi|190891398|ref|YP_001977940.1| two-component sensor histidine kinase [Rhizobium etli CIAT 652]
 gi|190696677|gb|ACE90762.1| putative two-component sensor histidine kinase protein [Rhizobium
           etli CIAT 652]
          Length = 527

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 65/233 (27%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           + +    N    +L     +   H+  +P+  I  + + L       E     +  + IR
Sbjct: 280 LTQERNIN----ELQRQFVAMASHEFRTPLAIIDAAAQRLLRKGGAVEPEFLSDKAEQIR 335

Query: 55  LSSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
            S    +  ++ +             +    +L  L       +  I+      +   G 
Sbjct: 336 ASVSRIVDLMESILSAGRLDTGTIDISYGACALRSLIRSCCERQSTISKTHSFVIDIDGL 395

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
              +  +     ++  NL   A    P   ++ I+  +       S+  +G      +  
Sbjct: 396 PEFIDADPRTLAQVFTNLLSNAVKYAPGTSEIRIAAWEETGNVRVSISDDGVGIDAEDVP 455

Query: 164 --FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +       + I    I    V  +   ++  +  +         +  L 
Sbjct: 456 LLFQRYFRARTSTGIAGTGIGLNLVKQIVELHQGSIEVQSARGCGSTFTVTLP 508


>gi|197116672|ref|YP_002137099.1| Cache/HAMP/PAS/PAC domain-containing sensor histidine kinase
           response regulator [Geobacter bemidjiensis Bem]
 gi|197086032|gb|ACH37303.1| sensor histidine kinase response regulator, Cache, HAMP, PAS, PAC,
           PAS and PAC domain-containing protein [Geobacter
           bemidjiensis Bem]
          Length = 1113

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 67/235 (28%), Gaps = 31/235 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS-------- 59
            S  + A+  L   I HD  + + AI     ++     E+  +Q      +         
Sbjct: 734 QSQKMEAIGTLTGGIAHDFNNILTAIIGYTTMMQLELDEEHPLQRKVGEILRASERAASL 793

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L + R   G          + +++ +++  I  +  ++     E++ +  +  +I 
Sbjct: 794 TRSLLAYSRRQAGNPAPTGLNAIINNVDILLQRLIPENIELRSQLAPEELSIMADSGQIE 853

Query: 120 LNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             +      A  ++P               R            +  + ++  +G      
Sbjct: 854 QVIMNLVVNARDAMPEGGVLSLSTESMALDREFVAKHGYGRPGSYALLAVADSGVGMDEK 913

Query: 162 EKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +  +I +    +        +    V  +  ++   +       H  V    L 
Sbjct: 914 TR-DRIFEPFFTTKAPGKGTGLGLAMVYGIVKQHAGFINCYSEPGHGTVFRIYLP 967


>gi|56414447|ref|YP_151522.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197363368|ref|YP_002143005.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128704|gb|AAV78210.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094845|emb|CAR60378.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 431

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 68/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E  + +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQALEGAMREKALHTMREQTYRMEGLVKQLLTLSKIEA 268

Query: 80  LIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   E+V    +                    +V  +   +    +    + NL   
Sbjct: 269 APALLLNEKVDVPMMLRVVEREAQTLSQQKHTFTFEVDDSLSVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+S +   +   F ++ NG      E   ++ +                
Sbjct: 329 AVNHTPAGTHITVSWRRVAHGAEFCIQDNGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  +         S +L 
Sbjct: 388 GLGLAIVKHALNHHESRLEIDSSPGKGTRFSFVLP 422


>gi|39934055|ref|NP_946331.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39647903|emb|CAE26423.1| sensor histidine kinase with a PAS domain [Rhodopseudomonas
           palustris CGA009]
          Length = 450

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 67/259 (25%), Gaps = 46/259 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------- 48
           +       +    + +L  L + + H++ +PI  I+ ++  LD                 
Sbjct: 191 LQHAQRQLVEQEKMASLGRLVAGVAHELNNPISFIYGNIHTLDRYRDRMSAYLGAIHRGA 250

Query: 49  ---------------------------VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
                                       ++     +       +      G +  VD   
Sbjct: 251 EPAEIERLRRDLKIDALLADYGSLIEGTLEGAMRVADVVKNLRRLSFPKSGESLRVDVDR 310

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTIS 139
            +    +                  E        +  +I++NL   A  ++       I 
Sbjct: 311 VVRTAVRWAARAKPHHVDFAFEIAPELAILGNEGQFHQIIVNLVDNALDAVRGQSAPRIE 370

Query: 140 V--QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195
           +  +   ++ + ++  NG          +I +    +    +   +  +    +A E+  
Sbjct: 371 IAARRGGDQIVITVSDNGAGLPDG-LIDKIFEPFFTTKPVGEGTGLGLWISYGIAREHGG 429

Query: 196 RLLPEIIDDHNVVLSALLE 214
            L     +    V +  L 
Sbjct: 430 TLAAANRNGGGAVFTLALP 448


>gi|152974333|ref|YP_001373850.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152023085|gb|ABS20855.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cytotoxicus NVH 391-98]
          Length = 462

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/215 (9%), Positives = 58/215 (26%), Gaps = 20/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIR-----------L 64
           S + H++++P+  +    ++           +E +Q+I   + S                
Sbjct: 246 SSVAHELLTPLTYMKGYAKVAKREGLSKEEREEYLQIIEDETDSITALIQDLFDLAQLEQ 305

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
               +          L  + +  +       +  R+  +         R   +++LNL  
Sbjct: 306 HQFIIKKQKVTLRPFLEKIIEKTKTNFSKTDIQIRLHCNDHLNVYIDERRMEQVMLNLLQ 365

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSH 179
            A+        +TI+V +++N     ++  G      +                      
Sbjct: 366 NAYQHSHEPSIITINVLENENTFTICVQDEGEGIPSEDLPHIFDRFYRVDKSRTRATGGK 425

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I       +   +   +  +   +        L 
Sbjct: 426 GIGLAVAREIVELHNGTITVQSELNVGTEFLIKLP 460


>gi|121728768|ref|ZP_01681782.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
 gi|121628945|gb|EAX61398.1| sensory box sensor histidine kinase/response regulator [Vibrio
           cholerae V52]
          Length = 1113

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 58/243 (23%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     ++    + +
Sbjct: 368 RKEMEDELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMAHLALNTPLDTTQRKYV 427

Query: 54  RLSSMSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              + SA                    + +        D L  +  +  +      ++  
Sbjct: 428 TRINESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFL 487

Query: 100 VQVSWTGEK--IDLSRERAKILLNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKI 153
           + +        I       ++++NL   A     +G          + + +    F++K 
Sbjct: 488 MDIDPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQVTLRFAVKD 547

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      ++     +     
Sbjct: 548 TGIGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGST 607

Query: 209 LSA 211
              
Sbjct: 608 FEF 610


>gi|325578625|ref|ZP_08148725.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159861|gb|EGC71991.1| aerobic respiration control sensor protein ArcB [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 588

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 66/233 (28%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           ++K +     +    + L + I H++ +P+  I     +L +  + ++    +   ++SA
Sbjct: 87  LSKTLARLEKNSRDKSTLLATISHELRTPLNGIIGLSRILLDDKLTEQQQNYLNTINLSA 146

Query: 61  IIRLKFMRLAFG----YTGSVDSLIGLGDIEQVIEDFIAVDK------------RVQVSW 104
           +                +  ++  I   D   ++ DF                 ++  + 
Sbjct: 147 VSLGHIFSDIIDLDKIDSKRIELNIQPCDFHSLLNDFYNFGTLMAEQKELKFSLKLDDNL 206

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                      ++IL NL   A     +G       +   N+  FS+   G      E  
Sbjct: 207 PNWLYLDRARLSQILWNLISNAVKFTDKGEVTLRVQKMQDNQYQFSVTDTGAGIAPCELD 266

Query: 165 TQIVDG----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +         I       LA   +  L  E   D        +
Sbjct: 267 KIFTMYYQVKDNIHRSAGSGIGLAISKNLAQLMQGDLTVESELDKGSTFYLTI 319


>gi|331656720|ref|ZP_08357682.1| sensor protein KdpD [Escherichia coli TA206]
 gi|331054968|gb|EGI26977.1| sensor protein KdpD [Escherichia coli TA206]
          Length = 894

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|255015778|ref|ZP_05287904.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
 gi|256841727|ref|ZP_05547233.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|256736621|gb|EEU49949.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
          Length = 752

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 50/229 (21%), Gaps = 17/229 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +         S  L +   + + H+I +P+ AI     LL +    +E  +   +   + 
Sbjct: 520 LRDKEKIE-ESNRLKSAFLANMSHEIRTPLNAIVGFSNLLAQTNPSEETKEFCEIIETNN 578

Query: 61  IIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
            + L+               M   +           L    Q                  
Sbjct: 579 ELLLQLVNDILDLSKIEAGQMDFIYSEFNVSTLFRSLYQTFQSRVKDGVTLYCEIPEQDC 638

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ N    A     +G       +       F +K  G           
Sbjct: 639 VIYSEKNRLTQVITNFLTNACKFTFQGSIRMGYKEREDG-LYFYVKDTGKGIERKNLPHV 697

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   + I    +       +      ++  E  +         + 
Sbjct: 698 FERFAKFDSFIQGTGLGLSICQTILDNLHGKIGVESEEGKGSTFWFTIP 746


>gi|258404324|ref|YP_003197066.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
 gi|257796551|gb|ACV67488.1| histidine kinase [Desulfohalobium retbaense DSM 5692]
          Length = 810

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 25/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   S + H+I +P+ A+  + +LL++  ++    + +R+   S  
Sbjct: 423 AKEEAERANRAK--SDFLSGLSHEIRTPMNALLGASDLLEKTELDARQRKYLRMGKSSGK 480

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105
             L  +             + L      +E  +                  +K++ ++  
Sbjct: 481 TLLSLITNLLDVARLERGRLQLAREVFSLEQMVQEAIDVVELAAQEKGLILNKKIALAVR 540

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           G  +       +IL+NL   A    P+G  +       +   +F +   G      E   
Sbjct: 541 GTYLGDPVRLRQILVNLLNNAMKFTPQGRVLVEVTPAEQTGVLFRVSDTGEGI-PQESLE 599

Query: 166 QIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            I +   +             +       L      R+  E           L+ 
Sbjct: 600 TIFEPFSQLDSSSGLPNSGSGLGLAISRQLLEAMGGRIWVESRLGRGSDFFFLVP 654


>gi|225022852|ref|ZP_03712044.1| hypothetical protein CORMATOL_02898 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944376|gb|EEG25585.1| hypothetical protein CORMATOL_02898 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 464

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 59/210 (28%), Gaps = 19/210 (9%)

Query: 24  HDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMSAIIRLKFM---------RLAFG 72
           H++ +PI  I   LELLD       +  ++L           +  +           +F 
Sbjct: 238 HELRTPITVIRGHLELLDTATHEQRERSVKLCMDELDRMTRMVNDLLTLAIADADGPSFL 297

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
           +   +D      DIE   +       +V     G  +  ++   + +L L   A      
Sbjct: 298 HMQPIDLTELTIDIEDKADMVSGGRAKVTEIAEGFVLADAQRITEAILELTRNAVKYTND 357

Query: 133 GGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTID-----SHDIQFY 184
              + I   +   +  FS++  G           F +   G    + D        +   
Sbjct: 358 DSSIIIGSTNKDGQVGFSVRDFGPGIDSATQEILFHRFNRGEQSPSSDQVPKKGAGLGLS 417

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V ++A  +      +              
Sbjct: 418 IVKVIAEAHGGHAWVDSTPGLGSTFGITFP 447


>gi|224539126|ref|ZP_03679665.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519257|gb|EEF88362.1| hypothetical protein BACCELL_04028 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 774

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 54/229 (23%), Gaps = 19/229 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      + +    L  + I H+I +P+ AI     +L     E+E  + + +   +  
Sbjct: 544 AKERAEESNRLKSAFL--ANISHEIRTPLNAIIGFSSILAMTEDEEEKKEYVSIIEKNNG 601

Query: 62  IR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WTG 106
           I        + L+    G +D       +  V+     V +                   
Sbjct: 602 ILLQLINDVLDLSKIEAGVLDLYYSEFGLNGVLATLKGVVESRLQDRVDLIFEPGMPDDY 661

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++LN    A      G            +  + +   G      +    
Sbjct: 662 VVYSEKNRLQQLVLNFLTNACKFTSTGSIRYGYEVR-DKDIYYYVTDTGTGIPEDKLHLI 720

Query: 167 IVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +      +      L+       +               L 
Sbjct: 721 FERFIKLDSFKQGTGLGLPICQLIIQNMGGEIGVNSKLGEGSTFWFTLP 769


>gi|218699051|ref|YP_002406680.1| sensor protein KdpD [Escherichia coli IAI39]
 gi|218369037|emb|CAR16791.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein ; sensory histidine
           kinase [Escherichia coli IAI39]
          Length = 894

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|170022385|ref|YP_001718890.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
 gi|186897301|ref|YP_001874413.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
 gi|169748919|gb|ACA66437.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
 gi|186700327|gb|ACC90956.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
          Length = 851

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
            K +   L     M  V  L   + HD  + +  I  SLEL      +       ++   
Sbjct: 482 RKALEEALVHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTATDSSDATRIHRALKAAE 541

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +      L F R    +  +V     L +++ +I   +     + +           +
Sbjct: 542 RGAQLTQRLLAFSRKQSLHPRAVAMKELLDNLDPLIRHSLPAHLTLTIEAQQPAWHAWID 601

Query: 115 RAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++   +      A  ++              +V       ++  +  +  +G+     
Sbjct: 602 VNQLENAIINLVMNARDAMEGRSGEIKIRTWNQRVERGEGRKQDMVVLEVADSGHGMTTA 661

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 662 -VKEQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVQIESEPGKGTRVCLQLPR 716


>gi|254226519|ref|ZP_04920103.1| sensor histidine kinase [Vibrio cholerae V51]
 gi|125620976|gb|EAZ49326.1| sensor histidine kinase [Vibrio cholerae V51]
          Length = 497

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 67/214 (31%), Gaps = 18/214 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIE---DEVMQLIRLSSMSAIIRLKFMRLA---- 70
           L + + HD+ +P+GAI  S   L +  +    +   +L+   +       + +       
Sbjct: 273 LLASVSHDLKTPLGAIIGSATTLTDPRLHLSTETQQELLTSIAEQGERLNRSLTKLLDIT 332

Query: 71  -------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                        V+    +G +   +   +   K    S        S    ++L+NL 
Sbjct: 333 RYTASALVPKLDWVEPEELIGTVLSRLAPRLTHHKVQIESQPMLVELDSLLIEQVLINLV 392

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE---STIDSHD 180
             A    PRG ++ I+      +   ++  NG      E   +I D       +  D   
Sbjct: 393 ENATKYTPRGSEIEIACAYQDQQFTLAVMDNGAGI-PDEALPRIFDRFYRVEGNHADGTG 451

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      ++   ++  +     +      +  + 
Sbjct: 452 LGLAICQVIVAAHQGSIRVHNRESGGACFTVTIP 485


>gi|311693220|gb|ADP96093.1| two-component sensor [marine bacterium HP15]
          Length = 987

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 60/232 (25%), Gaps = 23/232 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + S  L ++  L + + H+I +P+  I +  + L       +++            
Sbjct: 740 EDELMHSERLASVGRLAAGVAHEIGNPVTGISSLAQNLKLETDNPDILDTADQIQQQTRR 799

Query: 63  RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------ 116
               ++    +  + +           I   +     +                      
Sbjct: 800 ISTILQSLMNFARTGNHAQANRYEPVAIHRCVEESINLLSLSDKGLGIHYVNDCPPSLQV 859

Query: 117 --------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++ +NL   A  + P GG + +S +      I  +   G+     +    I 
Sbjct: 860 LGDEQRLVQVFVNLLANARDASPEGGTIRVSGKGDGYSAIIEVVDEGSGIPGDQL-DHIF 918

Query: 169 DGNVESTID--SHDIQFYYVILLAHENKIRLLPEIID----DHNVVLSALLE 214
           +    +        +    V  +  E+   +  E            +   L 
Sbjct: 919 EPFYTTKAPNKGTGLGLSLVYSIIEEHYGNVQVESPANADTGRGTCVRLRLP 970


>gi|331645853|ref|ZP_08346956.1| sensor protein KdpD [Escherichia coli M605]
 gi|330910452|gb|EGH38962.1| osmosensitive K+ channel histidine kinase KdpD [Escherichia coli
           AA86]
 gi|331044605|gb|EGI16732.1| sensor protein KdpD [Escherichia coli M605]
          Length = 894

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|284163565|ref|YP_003401844.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284013220|gb|ADB59171.1| PAS/PAC sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 626

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 63/232 (27%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + + +  +   ++  A   S   HD+  P+  + + L L++           +E ++   
Sbjct: 395 LVERLEESNERLEQFAYAAS---HDLQEPLRMVSSYLRLIENRYGDAFDEDGEEFLEFAV 451

Query: 55  LSSMSAIIRLKFMRLAFG------YTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGE 107
             +      ++ +              +VD  + L D  E +          +       
Sbjct: 452 EGADRMREMIQGLLEYSRVEAEGEPFQAVDLNVVLEDVCEDLQLRVDDSGAEITSERLPT 511

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQ 166
               + +  ++  NL   A     +         +    + I S++  G     P+   +
Sbjct: 512 VEGDANQLRQVFQNLLSNAIEYSGQEPPRIHVSAERDGAKWILSVRDEGIGI-DPDHADR 570

Query: 167 IVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           I +               I       +   +   +  E         S  L 
Sbjct: 571 IFEVFESLHTNDEHAGTGIGLALCERIVERHGGDIWVESTPGEGSTFSVTLP 622


>gi|262381430|ref|ZP_06074568.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
 gi|262296607|gb|EEY84537.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_33B]
          Length = 423

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 56/223 (25%), Gaps = 21/223 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63
            +  +     + + H+I +P+ AI     L+ E     E  +   + + +  +       
Sbjct: 181 EADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETTNASEQREYFSIINKNCDLLLKLIND 240

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRE 114
                      +          D       ++ +            V+    +       
Sbjct: 241 ILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHR 300

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++LLNL   A     + G +++  +        S+   G      +    F + V  +
Sbjct: 301 VEQVLLNLLSNAIKFTSK-GFISLFYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLD 359

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      ++  +    +               L 
Sbjct: 360 DF--YQGAGLGLPICKMIVEQLGGEIGVRSELGKGSTFWFTLP 400


>gi|256840824|ref|ZP_05546332.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|301309911|ref|ZP_07215850.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
 gi|256738096|gb|EEU51422.1| two-component system sensor histidine kinase [Parabacteroides sp.
           D13]
 gi|300831485|gb|EFK62116.1| two-component system sensor histidine kinase [Bacteroides sp. 20_3]
          Length = 423

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 56/223 (25%), Gaps = 21/223 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63
            +  +     + + H+I +P+ AI     L+ E     E  +   + + +  +       
Sbjct: 181 EADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETTNASEQREYFSIINKNCDLLLKLIND 240

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRE 114
                      +          D       ++ +            V+    +       
Sbjct: 241 ILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHR 300

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++LLNL   A     + G +++  +        S+   G      +    F + V  +
Sbjct: 301 VEQVLLNLLSNAIKFTSK-GFISLFYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLD 359

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      ++  +    +               L 
Sbjct: 360 DF--YQGAGLGLPICKMIVEQLGGEIGVRSELGKGSTFWFTLP 400


>gi|255013301|ref|ZP_05285427.1| two-component system sensor histidine kinase [Bacteroides sp.
           2_1_7]
          Length = 423

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 56/223 (25%), Gaps = 21/223 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63
            +  +     + + H+I +P+ AI     L+ E     E  +   + + +  +       
Sbjct: 181 EADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETTNASEQREYFSIINKNCDLLLKLIND 240

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRE 114
                      +          D       ++ +            V+    +       
Sbjct: 241 ILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHR 300

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++LLNL   A     + G +++  +        S+   G      +    F + V  +
Sbjct: 301 VEQVLLNLLSNAIKFTSK-GFISLFYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLD 359

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      ++  +    +               L 
Sbjct: 360 DF--YQGAGLGLPICKMIVEQLGGEIGVRSELGKGSTFWFTLP 400


>gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
 gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
           RS-1]
          Length = 1027

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 61/240 (25%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K      ++    +   + + H+I +P+  +   L+LL+     DE  + +  +  S 
Sbjct: 636 LQKATHLAETANRAKSEFLANMSHEIRTPLNGVLGMLQLLETTDQTDEQKEYLFGAISST 695

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
               + +      +      + + ++E  I+                     +       
Sbjct: 696 KRLTRLLSDILDISRIEAGRMEIVEVEFNIKKTRDSIKELFNPEAKGKGLRLEFGRDEDL 755

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-----ISVQDSKNENIFSLKINGNLAR 159
               +       +IL NL   A     +G          S  DS    + +++  G    
Sbjct: 756 PLVLVGDEARLRQILFNLVGNAIKFTEKGEIRIDASLLPSSSDSHVRVLVTVRDTGIGIP 815

Query: 160 FPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                           +         +    V  L       +  +        +   L 
Sbjct: 816 EEHLKGIFEPFVQAEASYTRRFQGAGLGLSIVRRLVKLMGGDISIDSTVGEGTTVYLSLP 875


>gi|261368232|ref|ZP_05981115.1| sensor histidine kinase KdpD [Subdoligranulum variabile DSM 15176]
 gi|282569741|gb|EFB75276.1| sensor histidine kinase KdpD [Subdoligranulum variabile DSM 15176]
          Length = 367

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 66/235 (28%), Gaps = 21/235 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIR 54
            +       +  L A L   I HD+ +P+ +I  +        E LD    +   + +  
Sbjct: 126 KERAALLAKNEQLRADLLRAISHDLRTPLTSISGNAANLLANDEKLDGEARQQIFLDIYD 185

Query: 55  LSSMSAI------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
            S              +          S + +  + +         + +  ++V    E 
Sbjct: 186 DSIWLINLVENLLSITRIEDGRMNLRLSTELVGEVIEEALRHTHRKSCEHTIRVDLPDEL 245

Query: 109 IDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +    +     ++L+NL   A    P G  +T++ +      + S+  +G       +  
Sbjct: 246 LLARMDARLIVQVLINLVDNAIKYTPAGSTITVAARAQDGFAVLSVLDDGPGIAPHIRPH 305

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                         +  S  +       +   +   +       H    +  + +
Sbjct: 306 VFEMFYTGEHKVADSRRSLGLGLALCKAIVDAHGGTITLTDNPPHGCNFTFTVPR 360


>gi|187778015|ref|ZP_02994488.1| hypothetical protein CLOSPO_01607 [Clostridium sporogenes ATCC
           15579]
 gi|187774943|gb|EDU38745.1| hypothetical protein CLOSPO_01607 [Clostridium sporogenes ATCC
           15579]
          Length = 342

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 72/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERKEYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K +++ +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLEQKYCLDEQIRQTILLFEYQWTKKNITLDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E +  +K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNKEVLIKIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     + + +    V  +    +  +     +         L K
Sbjct: 287 KDRVFEKFYQGDSSHYSEGNGLGLALVKRIIDICEGTIEISSHEGVGTDFIVKLPK 342


>gi|166712335|ref|ZP_02243542.1| two-component system sensor protein [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1131

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 53/218 (24%), Gaps = 23/218 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF------------M 67
           + + H++ +P+ AI    +L+     E   +    +    +                   
Sbjct: 752 ATLSHELRTPLNAILGWSQLMQSEMTEPTHLGRGLVIIERSARAQTQIIDDLLDMSVILS 811

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKILLNL 122
                     D    +    ++++      +                  +    ++L NL
Sbjct: 812 GKIRLQAERFDIAGLVRSTLELMQPTALAREIALELDAPCDGELWFFGDAGRLQQVLTNL 871

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT-----QIVDGNVESTID 177
              A    P GG V +++          ++  G               +  D      + 
Sbjct: 872 LSNALKFTPAGGTVRVAMDIEDERLRLCVQDTGIGIAADFLPHVFDRFRQADAGTTRRVG 931

Query: 178 SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
              +       L   +   L      +    + + +L 
Sbjct: 932 GLGLGLSISRQLVDLHGGILDASSAGEGQGALFTIVLP 969


>gi|163814717|ref|ZP_02206106.1| hypothetical protein COPEUT_00868 [Coprococcus eutactus ATCC 27759]
 gi|158450352|gb|EDP27347.1| hypothetical protein COPEUT_00868 [Coprococcus eutactus ATCC 27759]
          Length = 416

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 17/234 (7%), Positives = 61/234 (26%), Gaps = 27/234 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRL 55
           M +N    +          S   H++ +PI  I   + +L     ++  +  E ++ ++ 
Sbjct: 188 MKENEKRQMR-------FVSDASHELRTPIAVIQGYVNMLDRWGKEDEQVLGESIEALKN 240

Query: 56  SSMSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQ--VIEDFIAVDKRVQVSWT 105
            S      ++ +                 +D    + ++ +  ++ D     +       
Sbjct: 241 ESQHMKELVEQLLFLARGDSGRQHLNMEKLDLNCMVSEVWEESMMIDESHRYEFQGTENE 300

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
              +       + +      A         + + V++      + ++  G      +   
Sbjct: 301 ACVLGDVAMIKQSVRIFVQNAAKYSEPCTTIILGVKEEPGYVSYMIEDEGTGMNPGDLAH 360

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +     +     +       +   +   +     +D          
Sbjct: 361 IFDRFYRSDEARNSETGGSGLGLSIAKWIVDAHGGTIQVISREDIGSRFVVRFP 414


>gi|150008002|ref|YP_001302745.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
 gi|149936426|gb|ABR43123.1| two-component system sensor histidine kinase [Parabacteroides
           distasonis ATCC 8503]
          Length = 300

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/223 (9%), Positives = 56/223 (25%), Gaps = 21/223 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------ 63
            +  +     + + H+I +P+ AI     L+ E     E  +   + + +  +       
Sbjct: 58  EADKMKNAFIANMSHEIRTPLNAIVGFAHLVTETTNASEQREYFSIINKNCDLLLKLIND 117

Query: 64  --------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRE 114
                      +          D       ++ +            V+    +       
Sbjct: 118 ILDLSKIESGRLNYNVSEVELRDICQEAYVVQSLKMTSDVALLYNSVAMPSVRLWIDPHR 177

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             ++LLNL   A     + G +++  +        S+   G      +    F + V  +
Sbjct: 178 VEQVLLNLLSNAIKFTSK-GFISLFYEVEDMFVRVSVMDTGIGISEEKLESVFERFVKLD 236

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +      ++  +    +               L 
Sbjct: 237 DF--YQGAGLGLPICKMIVEQLGGEIGVRSELGKGSTFWFTLP 277


>gi|149174262|ref|ZP_01852889.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
 gi|148846807|gb|EDL61143.1| probable sensor/response regulator hybrid [Planctomyces maris DSM
            8797]
          Length = 2453

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 66/235 (28%), Gaps = 24/235 (10%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            + +      ++ +  +   + + H+I +P+ AI   ++L+DE+         +     + 
Sbjct: 2061 LKEARQMAEAANESKSAFLANMSHEIRTPMTAIMGYIDLIDELIDHKIATAYLSTVRRNG 2120

Query: 61   IIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW-- 104
               L                + +          L  +  I  V      ++  +      
Sbjct: 2121 EFLLDIINDILDLSKIEAGKLDIIRERFSPHQLLEDVCSIMDVRAAENRLELDIFYYGKI 2180

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              E     +   +IL+NL   A       G V I V  +  +  F +   G      +  
Sbjct: 2181 PAEIESDPKRLKQILINLVGNAIKFT-MKGSVKIFVSCNDQQLQFIIVDTGIGITTRQ-Q 2238

Query: 165  TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             ++          V        +       LA+     +  E   D     +  +
Sbjct: 2239 KRLFRPFSQGDHTVNREFGGTGLGLAISQRLANMLGGEICVESEKDKGSKFTVTI 2293


>gi|116696021|ref|YP_841597.1| signal transduction histidine kinase [Ralstonia eutropha H16]
 gi|113530520|emb|CAJ96867.1| signal transduction histidine kinase containing a receiver domain
           (hybrid) [Ralstonia eutropha H16]
          Length = 1106

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 57/217 (26%), Gaps = 23/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGY------ 73
           + + H+I +P+  +  S+ELL    ++      + +   ++   +  +     +      
Sbjct: 523 ATMSHEIRTPLNGMLGSIELLGLTRLDSRQRDQLAVMQHASQSLIYIINDVLDFSKIEAG 582

Query: 74  -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLF 123
                     V+ ++         E      + + V+       +  +     +IL NL 
Sbjct: 583 QMSLQLRPCRVEEIVEDVTRRFAAEAARKQLRLLCVNDPSLVEPVMADVVKLEQILNNLV 642

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTID 177
             A     +G  +  +++         +   G      +   ++ +              
Sbjct: 643 SNAVKFTEQGKVIVTAMRKPGGGVEIRVIDTGIGIAARD-QRRLFEPFVQAEQPDTRHYG 701

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L       +            +  L 
Sbjct: 702 GTGLGLSICRRLVGLMSGEIRLVSEPGLGSCFTVSLP 738


>gi|323138955|ref|ZP_08074016.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
 gi|322395801|gb|EFX98341.1| integral membrane sensor signal transduction histidine kinase
           [Methylocystis sp. ATCC 49242]
          Length = 460

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 65/220 (29%), Gaps = 11/220 (5%)

Query: 5   ICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +   L  +D  A       +   H++ +P+  +   LE  DE  +  ++++         
Sbjct: 234 VNQALERLDAAAKRMRRFTANAAHELRTPVAIMRARLEDPDEANLRADLVRDASQIQSIV 293

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----VDKRVQVSWTGEKIDLSRERA 116
              L   RL    T   D +  +G I Q++ D++       +R++      +I     R 
Sbjct: 294 EQMLIAARLTENQTTVDDRVELVGAIRQLVSDYMPLVVDCGRRIEFESREAQIFALGNRR 353

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--ES 174
            I   +  +   +L         +     +    +  +G      +   +I +       
Sbjct: 354 AIECVVGNLIDNALRAEPPGGTVLVRVDADATIDVIDHGEGVAPQD-KARIFEPFWRKSE 412

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       L   +  R+  E            L 
Sbjct: 413 ATPGTGLGLSIAKELMDMHGGRIWVEETPGGGATFRISLP 452


>gi|302036901|ref|YP_003797223.1| putative sensor histidine kinase CusS [Candidatus Nitrospira
           defluvii]
 gi|300604965|emb|CBK41298.1| putative Sensor histidine kinase CusS [Candidatus Nitrospira
           defluvii]
          Length = 481

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 63/212 (29%), Gaps = 20/212 (9%)

Query: 23  CHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSAIIRLKFMRL------------ 69
            H++ +P+  +  +LE+ L +    +E  + +  +       +   R             
Sbjct: 259 AHEMQTPLTVLQGNLEVTLQKARSTEEYREALIGNLEQVEKLIALARSLLTLTKVTGDRP 318

Query: 70  --AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
                       L  L    +++ D   +   ++V         ++   + L+NL   + 
Sbjct: 319 PLHLAPVELEPLLQELIIELKLLADDRRISLALEVVPVPTISADAQWLKQALINLLDNSL 378

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTIDSHDIQ 182
              P GG VT+ ++ S      +++  G        P  F +    +           + 
Sbjct: 379 KYTPPGGSVTVRLRRSDGSLEIAVRDTGPGIEAEHVPFLFDRFYRADKARARESGGTGLG 438

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  +   +   +  +         +  L 
Sbjct: 439 LAIVKGIVEAHGGTVAVDTQPGKGSEFTIRLP 470


>gi|291485593|dbj|BAI86668.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           natto BEST195]
          Length = 428

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/231 (9%), Positives = 70/231 (30%), Gaps = 19/231 (8%)

Query: 2   AKNICFN---LSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
           A+NI      + S  +  V+ L + + H++ +P+  +   ++LL                
Sbjct: 194 AENIALRSQLIHSEKMTIVSELAASVAHEVRNPLTVVRGFVQLLFNDETLQNKSSADYKK 253

Query: 50  -----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                +   +    + +   K              +     +     ++ +V    +   
Sbjct: 254 LVLSELDRAQGIITNYLDMAKQQLYEKEVFDLSALIKETSSLMVSYANYKSVTVEAETEP 313

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                  + +  + ++NL   +  ++P   G + IS + + +  + ++  NG      + 
Sbjct: 314 ELLIYGDATKLKQAVINLMKNSIEAVPHGKGMIHISAKRNGHTIMINITDNGVGMTDHQ- 372

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +       +   +       +   +   +           ++  L 
Sbjct: 373 MQKLGEPYYSLKTNGTGLGLTVTFSIIEHHHGTISFNSSFQKGTTVTIKLP 423


>gi|289208034|ref|YP_003460100.1| multi-sensor signal transduction histidine kinase [Thioalkalivibrio
           sp. K90mix]
 gi|288943665|gb|ADC71364.1| multi-sensor signal transduction histidine kinase [Thioalkalivibrio
           sp. K90mix]
          Length = 981

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 62/234 (26%), Gaps = 23/234 (9%)

Query: 4   NICFNLSSM-----DLVAL--LCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLI 53
                L S       L ++    + + H+I +P+  I +  + L    +        + I
Sbjct: 741 TERAQLESEIAHGDRLASIGRFAAGVAHEIGNPLTGIASLAQNLPLEQDPEEVRGTAEDI 800

Query: 54  RLSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
              +      ++ +             +  ++     + +  ++       D R  +   
Sbjct: 801 LAQTRRINAIVQSLVTFAHADEGPSAGHFETIALDAIVQEAIRLTRLAGRKDLRFDLDGL 860

Query: 106 GEKIDLSRERA--KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++ +NL   A  + P    V+IS           +   G        
Sbjct: 861 EGHYLRGSHATLLQVFINLLTNAEQASPENATVSISASARGRNIHLIIDDRGPGIEESSL 920

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++ +    +        +       +  ++   L+     +       +L +
Sbjct: 921 -ERLFEPFFTTKPAGHGTGLGLPVAYSIVRDHGGTLMAANRPEGGARFILILPR 973


>gi|212637548|ref|YP_002314073.1| osmolarity sensor protein [Shewanella piezotolerans WP3]
 gi|212559032|gb|ACJ31486.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A [Shewanella piezotolerans WP3]
          Length = 420

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/211 (12%), Positives = 69/211 (32%), Gaps = 6/211 (2%)

Query: 9   LSSMDL-VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFM 67
           +  ++   ALL + I HD+ +P+  I  + E++ E   +     ++        I  +F+
Sbjct: 209 MKQLEQDRALLMAGISHDLRTPLTRIRLASEMMVEED-QYLKDGIVHDIEDMDAIINQFI 267

Query: 68  RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
                          + ++   +    +  + +  S   +   +  +   I   L  +  
Sbjct: 268 SYIRQDQEGTREPEQINELINDVIQAESNREGIIESDLSDCPAVPMQGIAIKRILSNLVE 327

Query: 128 ASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQF 183
            +     G V IS Q +     FS++ NG      +    F     G+         +  
Sbjct: 328 NAYRYGNGWVKISSQYNGKVLGFSVEDNGPGIDEKQIPKLFEPFTQGDTARGSVGSGLGL 387

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  +   ++ +++     +  +     L 
Sbjct: 388 AIIKRIVDRHQGKVILTNRSEGGLHAQVWLP 418


>gi|16762786|ref|NP_458403.1| osmolarity sensor protein [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144273|ref|NP_807615.1| osmolarity sensor protein [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|1352371|sp|P41406|ENVZ_SALTI RecName: Full=Osmolarity sensor protein envZ
 gi|25298453|pir||AE0998 two-component sensor kinase EnvZ envZ [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|587571|emb|CAA55077.1| envZ [Salmonella enterica subsp. enterica serovar Typhi]
 gi|602090|emb|CAA54511.1| envZ [Salmonella enterica subsp. enterica serovar Typhi]
 gi|16505092|emb|CAD08113.1| two-component sensor kinase EnvZ [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139910|gb|AAO71475.1| two-component sensor kinase EnvZ [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 450

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 61/205 (29%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +         + + +         + + N+ + A      
Sbjct: 295 PMEMADLNSVLGEVIAAESGYEREINTALQAGSIQVKMHPLSIKRAVANMVVNAARYGNC 354

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
             KV+   +       F ++ +G      +    F   V G+   +     +    V  +
Sbjct: 355 WIKVSSGTESH--RAWFQVEDDGPGIKPEQRKHLFQPFVRGDSARSTSGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 IDNHNGMLEIGTSERGGLSIRAWLP 437


>gi|329851989|ref|ZP_08266670.1| mmoS [Asticcacaulis biprosthecum C19]
 gi|328839838|gb|EGF89411.1| mmoS [Asticcacaulis biprosthecum C19]
          Length = 1042

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 59/216 (27%), Gaps = 23/216 (10%)

Query: 21  RICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
            + H+I +P+  +     LL +   + D+ ++  +  + ++   L  +     ++     
Sbjct: 679 NMSHEIRTPLTVMIGFSSLLTERQDMPDDALRYAQRIATASNSLLSLVNDILDFSKLEAG 738

Query: 78  --------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK------IDLSRERAKILLNLF 123
                     ++ +     ++    A  K + + +  +           +   ++LLNL 
Sbjct: 739 QLELKPKPTEIVEMSRELFLMMQAQAAAKGLNLRFEDDNSVPDTVFLDPQAYRQVLLNLV 798

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVD--GNVESTIDS 178
             A      G  VT+ +          +   G         + F +     G+       
Sbjct: 799 GNAIKFTDTGS-VTLMLGYDNKHLTVRVIDTGPGMNEAGQAKLFQRFSQVDGSSTRKHGG 857

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +       L       +               L 
Sbjct: 858 TGLGLAICRGLVEAMGGTIGVTSAPGEGSHFHFTLP 893


>gi|307545686|ref|YP_003898165.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
 gi|307217710|emb|CBV42980.1| integral membrane sensor signal transduction histidine kinase
           [Halomonas elongata DSM 2581]
          Length = 496

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + I   +   +    L S I HD+ +PI  +    E+LD+  + +   +         
Sbjct: 275 MQRRIQHQVEERE---RLFSAISHDLKTPITRLRLRAEMLDDPMLRE---RFCASLDELD 328

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
            +    +    G     +  I                +  +V   GE   ++ +      
Sbjct: 329 QLVRGALDSVKGLDMHEEVEIIEPRALCDELAGEMALQGGEVRVMGEAAPVAVKPLAFKR 388

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VES 174
            L  +   ++  G +  + ++D+ +    +++ +G      ++  ++             
Sbjct: 389 CLTNLLENAVFYGRRAEVRLEDTPDSLQMAIRDHGPGIEPAQR-ERVFSPFVRLEPSRSR 447

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 +       +   +  RL  +   +  +V+S +L +
Sbjct: 448 HTGGSGLGLGIARHIIQAHGGRLALDNHPEGGLVVSLMLPR 488


>gi|306812886|ref|ZP_07447079.1| sensor protein KdpD [Escherichia coli NC101]
 gi|305853649|gb|EFM54088.1| sensor protein KdpD [Escherichia coli NC101]
          Length = 894

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|297155950|gb|ADI05662.1| two-component system sensor kinase [Streptomyces bingchenggensis
           BCW-1]
          Length = 389

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 20/224 (8%), Positives = 49/224 (21%), Gaps = 25/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 158 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADANRVTRLIAELLD 217

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                          VD    +    Q +        R  +   G    L  +  K+   
Sbjct: 218 ISRIDSGRLEVRRQPVDIAAAVRRHVQALTASGHSSGRFLIKVRGPLPGLWADPDKVDQV 277

Query: 122 LFMVAHASLPRGGKVTISVQDSK-----------NENIFSLKINGNLARFPEKFTQIVDG 170
           L  +   ++  G          +                ++   G               
Sbjct: 278 LGNLLENAVRHGEGTVTIEVAPELVKPAAEGPPVERTAVTVSDEGPGIPEESMSRVFTRF 337

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              S      +  Y V  +   +   +               L 
Sbjct: 338 WRGSKRGGTGLGLYIVKGIVEAHGGTITVGRAHGGGAEFRFTLP 381


>gi|291279346|ref|YP_003496181.1| hypothetical protein DEFDS_0953 [Deferribacter desulfuricans SSM1]
 gi|290754048|dbj|BAI80425.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 498

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 74/231 (32%), Gaps = 20/231 (8%)

Query: 3   KNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL------- 52
           K    N+     L  +  + S I H+I +P+ +I N L +L  +  +    ++       
Sbjct: 265 KTFEENIKHVEKLATIGQITSGIIHEINNPLTSIKNYLSVLKHLCSDSTQQEILNKLNFG 324

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-RVQVSWTGE---K 108
           I      A+  + F+R        ++    +  +    +  I     ++ +         
Sbjct: 325 IEKIENLAVNLVTFVRKPENKKYPINLNNTIKSVFSFSDYEIRRGNVQINLELEENLPLI 384

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKFTQ 166
              +    +++LNL + A+ +L       I      + ++    +  NG      E   +
Sbjct: 385 YGNNTSIEQMILNLLINANHALAEVENPQITVKTYSNNDDIFLEISDNGPGI-PEEIQDK 443

Query: 167 IVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           I +    +  +     +    V  +  E+   +       +        +K
Sbjct: 444 IFEPFFTTKPEGKGTGLGLAIVKKIVEEHNGEICF-NTSKNGTTFVIKFKK 493


>gi|302554938|ref|ZP_07307280.1| two-component system sensor kinase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472556|gb|EFL35649.1| two-component system sensor kinase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 493

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 56/234 (23%), Gaps = 25/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           ++     +   +    +   H++ +P+ ++    +L           +   L+ + A   
Sbjct: 245 SLAVRAEAEQRLRRFVADASHELRTPLMSVRGYADLFQYAAANAPEERDRHLARLRAEAA 304

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------- 106
              + L      +           ++ +  +                             
Sbjct: 305 RMGVLLDDLLLLARLDAAEAETPLRLQDADLMELVHQAADAFRAGRPDHPLTGPAGPRAV 364

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                     +++ NL   A    P G KV++ V          +   G     P+   +
Sbjct: 365 WLRMDPLRIRQVVDNLLTNAAVHTPPGTKVSVEVCVGPGTAEVRVTDTGPGI-PPDDRDR 423

Query: 167 IVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + D                 +       L   +  R+  +       V +  L 
Sbjct: 424 VFDRFYRVDKARSRDRGGSGLGLAVAHSLVRAHGGRIELDSEPGA-TVFTVRLP 476


>gi|226948176|ref|YP_002803267.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
 gi|226842979|gb|ACO85645.1| sensor histidine kinase [Clostridium botulinum A2 str. Kyoto]
          Length = 342

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K +++ +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLEQKYYLDEQIRQTILLFEYQWTKKNITLDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     + + +    V  +    +  +     +         L K
Sbjct: 287 KDRVFEKFYQGDSSHYSEGNGLGLALVKRIIDICEGTIEISSHEGVGTDFIVKLPK 342


>gi|167769268|ref|ZP_02441321.1| hypothetical protein ANACOL_00591 [Anaerotruncus colihominis DSM
           17241]
 gi|167668908|gb|EDS13038.1| hypothetical protein ANACOL_00591 [Anaerotruncus colihominis DSM
           17241]
          Length = 1072

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 65/241 (26%), Gaps = 26/241 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +     + S  L +   + + H+I +PI A+    E+L    + D++   + +   + 
Sbjct: 350 LDRMRRAEVESNRLKSTFLANMSHEIRTPINAVIGMSEILMRKKLPDDLRADVGVIHSAG 409

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 +        ++   +      +  +  + +   ++   
Sbjct: 410 QGLLAIISEILDFSKIESGKFELIETEYMLPALVETVVHIIGVRFSKKPVCLLIDIEPDT 469

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKINGNLARF 160
                  ++   +ILLNL   A      G        +         I S++  G+  R 
Sbjct: 470 PIGLFGDNQRVQQILLNLLSNAEKFTQSGYVRLYWRWEHAGEDMVRMIISVEDTGSGIRP 529

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL-LE 214
                               +    +       +A      +  E       V +   L+
Sbjct: 530 ENLEKIFAQYQQVDAKSNRALVGTGLGLAIGREMARMMGGDITVESEYGKGSVFTVTFLQ 589

Query: 215 K 215
           K
Sbjct: 590 K 590


>gi|153870406|ref|ZP_01999815.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152073131|gb|EDN70188.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 358

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 56/226 (24%), Gaps = 18/226 (7%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRLS 56
               + +L A     + HD+ +P+  I N +E+L E            +     Q     
Sbjct: 133 LQQHNQELDAF-AHSVAHDLKNPVNVITNYIEMLIEDLSPIIRSESLQMLQNTRQAASNL 191

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID----LS 112
                  L   R            +              ++       +  +       +
Sbjct: 192 VNIIDALLLLSRTRQQNVEMEVLSMDEIVKHVEFRLAKMIEDYQGKIISPVQWPNALGYA 251

Query: 113 RERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
               ++  N              +   +  D   +  F ++ NG      E+    +  +
Sbjct: 252 PWITEVWANYISNGLKYGGHPPLLELGAEPDDDEQICFWIRDNGEGLTEEEQGQLFMPFS 311

Query: 172 V--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++ ++   +    V  +      ++  +            L K
Sbjct: 312 RLSQTRVEGQGLGLSIVERIIETCGGQVGVDSKMGKGSTFYFTLPK 357


>gi|89097893|ref|ZP_01170780.1| hypothetical protein B14911_23177 [Bacillus sp. NRRL B-14911]
 gi|89087395|gb|EAR66509.1| hypothetical protein B14911_23177 [Bacillus sp. NRRL B-14911]
          Length = 384

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 62/220 (28%), Gaps = 17/220 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRLKF 66
               L   + + I H+I +P+  +   L+LL    +  + +    L+      A   +  
Sbjct: 159 EKQALAGRIAAGIAHEIRNPLTTVRGYLQLLQSKTDQEVSELFSSLLIPEIDRANKIITD 218

Query: 67  MRLAFGYTGSVDSLIGLGDIE-----------QVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                    +   L+   +              ++ +     +  +++          E 
Sbjct: 219 FLRIAKPGETTSELLNAKEFILGYTGKFLNSEALLYNAEIEYQLTEIADNTFFRGDRDEL 278

Query: 116 AKILLNLFMVAHAS-LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES 174
            ++ +NLF  A  +      K+ I+ +   +      + NG           I D    +
Sbjct: 279 LQVFINLFRNAFQAKGSEPLKIIIAAKRVDSFLRIEFRDNGRGIPSS-ILPHIFDPFFTT 337

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +       +   +   +  +  D         + 
Sbjct: 338 KDEGTGLGLSVSKKVIENHGGMMNVKS-DGQGTQFIIDIP 376


>gi|83944498|ref|ZP_00956951.1| sensory box sensor histidine kianse/response regulator
           [Sulfitobacter sp. EE-36]
 gi|83844700|gb|EAP82584.1| sensory box sensor histidine kianse/response regulator
           [Sulfitobacter sp. EE-36]
          Length = 761

 Score =  108 bits (269), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 18/235 (7%), Positives = 59/235 (25%), Gaps = 31/235 (13%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIR 63
            S  + A+  L   + HD  + + AI    +LL    D    +   +  I  ++  A   
Sbjct: 384 QSQKMQAIGQLAGGVAHDFNNLLTAISGHCDLLLLRHDPGDRDYSDLVQIDQNANRAAAL 443

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           +  +             + + D       ++   +     + +S       +  ++ ++ 
Sbjct: 444 VGQLLAFSRKQTLRPETVNMRDTLADLTHLLNRLVGETVTLTLSHDPILQPIRADKRQLE 503

Query: 120 LNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARFP 161
             L      A  ++P                                  +   G      
Sbjct: 504 QVLMNLIVNARDAMPMGGEIKVTTENTQLAEPLTRDRVTVPVGKYVTVEVTDEGEGI-PQ 562

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++  ++ +    +    +   +       +  ++   +  +         +    
Sbjct: 563 DRLQKVFEPFYTTKRTGEGTGLGLSTAYGIVKQSGGYIFVDSTIGEGTTFTLYFP 617


>gi|322834644|ref|YP_004214671.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
 gi|321169845|gb|ADW75544.1| multi-sensor hybrid histidine kinase [Rahnella sp. Y9602]
          Length = 779

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 53/215 (24%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E    ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDKEQHSYLKTIHVSAITLGNIFNDIIEMDKIERR 347

Query: 80  LIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +      +F++                      +              +IL NL 
Sbjct: 348 KVQLDNQPVDFTEFLSDLENLSGLLAQPKGLKFIMEPDLPLPRSITTDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A      G  V     +  +   F ++ +G      E+                    
Sbjct: 408 GNAVKFTREGEIVLSVHYEPNDMLRFVVRDSGLGIPQDEQDKIFAMYYQVKDQNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +    +       + +
Sbjct: 468 GTGIGLAVSKRLAQAMGGDITVSSVPGQGSCFTLV 502


>gi|312965133|ref|ZP_07779370.1| sensor protein kdpD [Escherichia coli 2362-75]
 gi|312290224|gb|EFR18107.1| sensor protein kdpD [Escherichia coli 2362-75]
          Length = 854

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 609 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 667

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 668 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 727

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 728 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 787

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 788 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 840


>gi|310640534|ref|YP_003945292.1| sensor protein [Paenibacillus polymyxa SC2]
 gi|309245484|gb|ADO55051.1| Sensor protein [Paenibacillus polymyxa SC2]
          Length = 891

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK            +   S + H++ +P+  I     LL +  +++E    I + + S+ 
Sbjct: 631 AKESAERADRAK--SEFLSVMSHELRTPMNGIIGMAGLLADTELDEEQRSYIDIITSSSN 688

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWT 105
             ++ +      +      + L                  + Q +E  I ++  V     
Sbjct: 689 ALMQILNEILDLSKIEAGKMSLLHESFVLEDVVGSVADLFMTQAMEKGIQLEWHVDQEMP 748

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGG------KVTISVQDSKNENIFSLKINGNLAR 159
           G  +       +IL+NL   A     RG       +   S +  K    FS+   G    
Sbjct: 749 GMLVGDHVRIRQILVNLVSNAIKFTERGHVNIFVERKAYSRRKKKCLIEFSVTDTGIGIP 808

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +             +        +       L       +  +  +         L
Sbjct: 809 ADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDEARGATFRFQL 867


>gi|304391820|ref|ZP_07373762.1| sensor kinase [Ahrensia sp. R2A130]
 gi|303296049|gb|EFL90407.1| sensor kinase [Ahrensia sp. R2A130]
          Length = 906

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 71/254 (27%), Gaps = 41/254 (16%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIR 54
            K +   +  +  + A+  L   I HD  + + AI    +LL             +  I+
Sbjct: 493 QKELERQMAQTQKMTAVGQLAGGIAHDFNNVLTAIIGFSDLLLANHRPSDPSFPDIMQIK 552

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR- 113
            ++  A + ++ +             + + D+   +   +      ++    +       
Sbjct: 553 QNANRAAVLVRQLLAFSRRQTLRPQTLSVPDVLSDLRLLLERLVGDKIKLDMKHGRDLWN 612

Query: 114 ------ERAKILLNLFMVAHASLPRGGKVT------------------------ISVQDS 143
                 +  ++++NL + A  ++    +                               +
Sbjct: 613 LKADIGQFEQVVVNLCVNARDAINDTPQGHAGGGGAVTVSTRNMLAEEVKPGVFHKELPA 672

Query: 144 KNENIFSLKINGNLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEI 201
            +  +  +   G     PE   +I D    +        +    V  +  ++   + PE 
Sbjct: 673 ADYVVIEVSDTGTGM-SPEVMQKIFDPFFSTKDVGKGTGLGLSTVYGIIKQSGGYIFPES 731

Query: 202 IDDHNVVLSALLEK 215
                   +  L +
Sbjct: 732 EVGQGTTFAIYLPR 745


>gi|262274843|ref|ZP_06052654.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
 gi|262221406|gb|EEY72720.1| signal transduction histidine kinase [Grimontia hollisae CIP
           101886]
          Length = 808

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 20/236 (8%), Positives = 66/236 (27%), Gaps = 25/236 (10%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLS 56
           ++I        +     + + H++ +P+ +I  +L ++      +      +++ L   +
Sbjct: 437 RDITSRKKDEAMKNEFVATVSHELRTPLTSIRGALGIILGKFSGELPDKTQKMLTLALRN 496

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTG--- 106
                + +  +                                  A   ++ V++     
Sbjct: 497 CERLTLLINDILDIEKLESGAMLYHFNRCNLYSIIARSIEDNTGYAKHHQITVTFESDTE 556

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  S    +++ NL   A      GG+V ++++++ +     +  +G     PE  
Sbjct: 557 TAYINADSTRMQQVMANLLSNAIKYSKSGGEVNVTLENNGSSFRVEITDHGAGI-PPEFH 615

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +              +    +       +   +K +L    +          + 
Sbjct: 616 EHLFTRFSQADSSDTRRVGGTGLGLAIAKSIIEAHKGQLHFFSVPKQGATFFFTVP 671


>gi|261493613|ref|ZP_05990133.1| histidine kinase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495451|ref|ZP_05991899.1| histidine kinase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308956|gb|EEY10211.1| histidine kinase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261310795|gb|EEY11978.1| histidine kinase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 616

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 62/219 (28%), Gaps = 22/219 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I    ++L +    ++  + ++  +MSA               
Sbjct: 115 SILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSATALAHIFGDIIDLEK 174

Query: 76  S--------------VDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERAKIL 119
                             +  + +    +     ++  V+                ++IL
Sbjct: 175 IDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPDLPKYIYIDHARLSQIL 234

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVES---- 174
            NL   A    P  G++ + +      +  F++  +G      ++               
Sbjct: 235 WNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPEKDQRKIFDMFYQAENSKE 294

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  I       +A      L+    ++     +  
Sbjct: 295 KKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLT 333


>gi|253576275|ref|ZP_04853606.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251844402|gb|EES72419.1| integral membrane sensor signal transduction histidine kinase
           [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 359

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 71/235 (30%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQL 52
           +A +    +  +     L +       H+  +PI +I    +LL +       + + +  
Sbjct: 115 LAVSFNKMVQELKGIETLRSDFVRNFSHEFKTPIVSISGFAKLLKQGNLSEEDKQDYLDR 174

Query: 53  IRLSSMSAIIRLKFMRL----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           I   S   +     +            +   +  +D  I L  +    +      +    
Sbjct: 175 IIQESERLVELSTSILNLSKVENIEILSEKTSYRLDEQIRLAVLMLEPKWNAKSLQLDIA 234

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR--- 159
                         ++ +NL   A      GGK+ I++Q    + IF L+ NG       
Sbjct: 235 LDDVTIHGNKNLLQQVWINLLDNAIKFTGSGGKLKIALQRRGQQAIFRLEDNGRGMDEET 294

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   G+   ++  + +    V  +    +  +  +       V +  L 
Sbjct: 295 MRRMFDKFYQGDSSRSMTGNGLGLTIVKRIVDLCEGTIEVDSELGVGSVFTVRLP 349


>gi|284041098|ref|YP_003391028.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
 gi|283820391|gb|ADB42229.1| multi-sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
          Length = 952

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 60/238 (25%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+   +   +        + + H+I +P+ AI     LL +     +  + I +   SA
Sbjct: 440 LARAKQYAEEAQQAEKQFFANMSHEIRTPLNAIIGMSHLLYDTQPSAQQREYINILKTSA 499

Query: 61  IIRLK-----------FMRLAFGYTGSVDSLIGLG-----DIEQVIEDFIAVDKRVQVSW 104
                                  +    D    L         ++    I++D  +    
Sbjct: 500 DFLHSLISDLLDMTKIEAGHIEVHARPFDLAGLLRSTQKVFEMKLQGRPISIDVLLDTRI 559

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
           T   +       +I++NL   A      G    I     +        F++   G     
Sbjct: 560 TNAFVGDDVMLNQIMMNLVGNAEKFTEEGQIQIIGKVKKEEGDKTWIEFTVSDTGVGIPA 619

Query: 161 PEKFTQI----VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +            +         +       L       +  +  +      + ++ 
Sbjct: 620 DKIGLVFKKFKQVNSQGYKHKGTGLGLAITKELVELQGGTISVKSQEGVGSSFTFVIP 677


>gi|241204212|ref|YP_002975308.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858102|gb|ACS55769.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 511

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 65/233 (27%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           +A+    N    +L     +   H+  +P+  I  + + L       E     + +  IR
Sbjct: 269 LAQERNIN----ELQRQFVAMASHEFRTPLAIIDAAAQRLLRKRGAVEPEFLSDKVDQIR 324

Query: 55  LSSMSAIIRLK-FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD------KRVQVSWTGE 107
            S    +  ++  +      TG +D       +  +I+             R+ +   G 
Sbjct: 325 ASVTRIVDLMESILSAGRLDTGKIDISYDACALRSLIKTCCERQSTIAKSHRLVLDIDGL 384

Query: 108 KIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
              +  +     ++  NL   A    P   ++ ++          S+  +G      +  
Sbjct: 385 PEFIDADPRTLAQVFTNLLSNAVKYAPGTSEIRVTAWAETGNVKVSISDDGVGIDAEDVP 444

Query: 164 --FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +       + I    I    V  +   +   +               L 
Sbjct: 445 RLFQRYFRARTSTGIAGTGIGLNLVKQIVELHNGSIEVRSARGCGSTFIVTLP 497


>gi|153009989|ref|YP_001371204.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561877|gb|ABS15375.1| multi-sensor signal transduction histidine kinase [Ochrobactrum
           anthropi ATCC 49188]
          Length = 784

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 64/237 (27%), Gaps = 27/237 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLSS 57
            K      +     +   + + H++ +P+ AI    E++          D   + I    
Sbjct: 534 EKERAEAANRAK--SEFLANMSHELRTPLNAIIGFSEMIQAGTFGPLGSDRYEEYINDIH 591

Query: 58  MSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S    L                  L          +     +  +  D   +    ++ 
Sbjct: 592 TSGNFLLNVINDILDMSKIEAGHFSLDREQIDLCPLINETVRMISLQADEKNIAVNTRIE 651

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
              +     R   ++L+NL   A      GG++T+  + + +    +++  G        
Sbjct: 652 EAMQLYADRRAIKQVLINLLSNAVKFTSYGGQITVRARKTGSALFMTIQDTGVGIPKSAI 711

Query: 164 FTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I             T     +       LA  +   L     +    V+S  + 
Sbjct: 712 K-KIGQPFEQVENQFTKTHTGSGLGLAITRSLAELHGGWLRIRSTEGVGTVVSVCIP 767


>gi|170741220|ref|YP_001769875.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
 gi|168195494|gb|ACA17441.1| multi-sensor hybrid histidine kinase [Methylobacterium sp. 4-46]
          Length = 1596

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 63/246 (25%), Gaps = 36/246 (14%)

Query: 2    AKNICFNLSSMDLVA-----LLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRL 55
            A+ +     + +  +      L S + H+I +P+  I    +LL D+  +     +    
Sbjct: 1088 AEALELARDAAEQASRAKTDFLAS-MSHEIRTPLNGILGYTDLLLDDPSLGGGQRRQAER 1146

Query: 56   SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----------- 104
               +    L  +     ++      I L     +++  +     V   +           
Sbjct: 1147 IQSAGAALLTIVNDILDFSKIEAGQIELDPQPFLLDALLDNTVSVVRGFARKKAIAVAVR 1206

Query: 105  -----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKING 155
                     +       +ILLNL   A      G        +S         F++   G
Sbjct: 1207 LDGAAPRTLVGDQDRLRQILLNLLNNAVKFTHAGSVTLAVACESPPGATACLRFAVSDTG 1266

Query: 156  NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV- 208
                  +K  ++          +        +       L       +  E +       
Sbjct: 1267 IGI-PRDKHERLFQRFSQVDNSIRRDFGGTGLGLAISKNLVELMGGTIGVESVVSEGTTF 1325

Query: 209  -LSALL 213
              +  L
Sbjct: 1326 WFTVTL 1331


>gi|170740444|ref|YP_001769099.1| response regulator receiver sensor hybrid histidine kinase
           [Methylobacterium sp. 4-46]
 gi|168194718|gb|ACA16665.1| response regulator receiver sensor hybrid histidine kinase
           [Methylobacterium sp. 4-46]
          Length = 588

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 72/240 (30%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           A+        ++ +  L S + HD  + +  I  ++E L+ +  ++   + + +      
Sbjct: 183 AEEALRQAQRLEAIGQLTSGVAHDFNNLLTVIVGNIEFLEPLATDERTRRRLAMMRGAAE 242

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                    L F R        V     +  +  +++  I    R++ S   +      +
Sbjct: 243 RGARLTSQLLAFSRRQRLEPTPVQLNQTVAAMRDLLQSSIGGAVRIETSLQPDLWPALVD 302

Query: 115 RAK---ILLNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNL 157
             +   ++LNL + A  ++P                           +  + ++   G+ 
Sbjct: 303 ATQIELVILNLCINARDAMPVGGGLTIETANVRLLDEPHRAEEPPPGDYVMVAVCDTGSG 362

Query: 158 ARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              P    ++ +    +        +    V   A ++   +  +        +   L +
Sbjct: 363 I-PPAVLARVFEPFFTTKEVGKGSGLGLAQVYGFAKQSGGGVRIDTRVGEGTSVKVYLPR 421


>gi|126656724|ref|ZP_01727938.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
 gi|126621944|gb|EAZ92652.1| Multi-sensor Hybrid Histidine Kinase [Cyanothece sp. CCY0110]
          Length = 1302

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 61/232 (26%), Gaps = 26/232 (11%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSSMS 59
                 +    L  L      H++ SP+  I    +LL     +     E +  I  ++  
Sbjct: 930  ERANRIKDEFLAVL-----SHELRSPLNPILGWSQLLQVRKLDEAQTAEALHTIERNAKL 984

Query: 60   AIIRLKFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                +  +                      ++    +  +      ++    Q+   G+ 
Sbjct: 985  QTQLIDDLLDVAKILQGKLSLTMTSVNLAKTIEAAIETVKQTAKSKSIALESQLPNIGQV 1044

Query: 109  IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT--- 165
                    +I+ NL        P GG+V I ++   +     +K  G             
Sbjct: 1045 SGDEARLQQIVWNLLSNGIKFTPSGGQVKIHLKRVGSYAEILVKDTGKGISPDFLPHIFE 1104

Query: 166  --QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLSALLE 214
              +  D ++        +    V  L   +   +  E   +      +  L 
Sbjct: 1105 SFRQEDASITRKFGGLGLGLAIVSQLVEAHGGTIRAESPGEGLGATFTVQLP 1156


>gi|90580601|ref|ZP_01236406.1| putative sensor histidine kinase FexB [Vibrio angustum S14]
 gi|90438259|gb|EAS63445.1| putative sensor histidine kinase FexB [Photobacterium angustum S14]
          Length = 789

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 57/217 (26%), Gaps = 25/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  + DE    +R   +SAI              S   
Sbjct: 288 STISHELRTPLNGIVGLSRMLLDTDLTDEQRGYLRTVHVSAITLGNIFNDIIDLDKSDRR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRVQ----------------VSWTGEKIDLSRERAKILLNLF 123
            + L        +FI     +                           S    ++L NL 
Sbjct: 348 RLELMPKPLDFNEFIDEMGNISQLMAEQKGLRFDLECLTELPKNIEVDSTRLRQVLWNLI 407

Query: 124 MVAHASLPR---GGKVTISVQDSKNENIFSLKINGNLARFPEK------FTQIVDGNVES 174
             A     +      V+  + +   + IF ++ +G      E       + Q+  G+   
Sbjct: 408 GNATKFTKQGGVILSVSSEIHEHDADIIFEVEDSGVGIPKSEIDNIFAMYYQVKQGDDNI 467

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                 I       L       +            + 
Sbjct: 468 HAVGTGIGLAVSRQLVQLMGGDITVHSEVGEGSTFTV 504


>gi|75906870|ref|YP_321166.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
 gi|75700595|gb|ABA20271.1| multi-sensor signal transduction histidine kinase [Anabaena
            variabilis ATCC 29413]
          Length = 1741

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 61/237 (25%), Gaps = 23/237 (9%)

Query: 1    MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
            + + +   L        L +   S   H+  +P+  I +S ELL+          +   +
Sbjct: 1501 LEEYLKVALEKEKELSELKSRFVSMTSHEFRTPLSTILSSSELLEHYRHKWTEEKQLTHL 1560

Query: 51   QLIRLSSMSAIIRLKFMRLAFG-------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
              I+ +       L  + +          +      ++               +K+V   
Sbjct: 1561 HRIQTAVKRMTEMLNDILIIGKAEAGKLEFMPKPLDVVAYCRNLVEEIQLNLNNKQVDFI 1620

Query: 104  WTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
               + +    +      IL+NL   A    P    V +         +F +   G     
Sbjct: 1621 SEYQSMSCCMDEKLLGHILINLISNAIKYSPVNSNVQVKFYCRDQCAVFEVHDWGIGIPA 1680

Query: 161  PEKFTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +             +       +    V      ++  +      +   + +  + 
Sbjct: 1681 EDITHLFESFYRAKNVGNILGTGLGLAIVKKCVDVHEGEISVSSNSEIGTLFTVNIP 1737


>gi|26246670|ref|NP_752710.1| sensor protein KdpD [Escherichia coli CFT073]
 gi|26107069|gb|AAN79253.1|AE016757_157 Sensor protein kdpD [Escherichia coli CFT073]
          Length = 895

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 650 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 708

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 709 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 768

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 769 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 828

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 829 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 881


>gi|186684333|ref|YP_001867529.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
 gi|186466785|gb|ACC82586.1| PAS/PAC sensor hybrid histidine kinase [Nostoc punctiforme PCC
           73102]
          Length = 1105

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 66/244 (27%), Gaps = 30/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
           + + +      +           + + H++ SP+  I     LL     +    +  ++ 
Sbjct: 714 LEQTLRQQTEELKQANQNKDEFLAILSHELRSPLNPILGWSSLLKSRKFDEATTNRALET 773

Query: 53  IRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           I  ++   I  +             + L F        +    +  ++I +  ++  ++Q
Sbjct: 774 IERNTQLQIKLIDELLDVSRIIRGKLNLTFATVNLASVIDAALETVRLIAESKSIQIKIQ 833

Query: 102 VSWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF----SLKINGN 156
           +     K+        +++ NL   A    P  G V +S+  S           +K  G 
Sbjct: 834 LDPNVGKVSGDYYRLQQVVGNLLSNAVKFTPPNGSVEVSLSSSGELASHSALIQVKDTGQ 893

Query: 157 LARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEI-IDDHNVVLS 210
                                        +    V  L   +   +      +    + +
Sbjct: 894 GISPEFLPHVFEYFRQADSSRTRKFGGLGLGLAIVRNLVELHGGTVTAASPGEGQGAIFT 953

Query: 211 ALLE 214
             L 
Sbjct: 954 VRLP 957


>gi|186683956|ref|YP_001867152.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186466408|gb|ACC82209.1| hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 609

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 64/235 (27%), Gaps = 23/235 (9%)

Query: 3   KNICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
            N    L   + L     +   H+I +P+ +I     LL           + E + +I+ 
Sbjct: 220 SNSNQELERTNQLKNQFLANTSHEIRTPLSSIIGFTNLLLAPGYEPTIERQREYLNIIQS 279

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE---------DFIAVDKRVQVSWTG 106
           S    +  +  +        +   +        ++               D R+ +    
Sbjct: 280 SGKHLLALINDILDLSKIEANQLEVQWECVDVPLLCSNVLALVKEKAANKDLRLCLEIDP 339

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKF 164
           +   L  +  ++   L  +   +L    K ++   V        F++   G+     ++ 
Sbjct: 340 DITTLVADSLRLKQMLLNLLFNALKFTSKGSVGLQVVAKGISVHFTVWDTGSGISQEDQT 399

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +   +       LA  +   +  E   D     + +L 
Sbjct: 400 QLFEPYFQIAKAVAGGAEGTGLGLAVTRKLAQIHGGSVKVESEVDSGSRFTLVLP 454


>gi|321312689|ref|YP_004204976.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
 gi|320018963|gb|ADV93949.1| two-component sensor histidine kinase [Bacillus subtilis BSn5]
          Length = 428

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 20/231 (8%), Positives = 68/231 (29%), Gaps = 19/231 (8%)

Query: 2   AKNICFN---LSSMDL--VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------- 49
           A+NI      + S  +  V+ L + + H++ +P+  +   ++LL                
Sbjct: 194 AENIALRSQLIHSEKMTIVSELAASVAHEVRNPLTVVRGFVQLLFNDETLQNKSSADYKK 253

Query: 50  -----MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                +   +    + +   K              +     +     ++ +V    +   
Sbjct: 254 LVLSELDRAQGIITNYLDMAKQQLYEKEVFDLSALIKETSSLMVSYANYKSVTVEAETEP 313

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEK 163
                  + +  + ++NL   +  ++P G  V     + + +  + ++  NG      + 
Sbjct: 314 DLLIYGDATKLKQAVINLMKNSIEAVPHGKGVIHISAKRNGHTIMINITDNGVGMTDHQ- 372

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +       +   +       +   +   +           ++  L 
Sbjct: 373 MQKLGEPYYSLKTNGTGLGLTVTFSIIEHHHGTISFNSSFQKGTTVTIKLP 423


>gi|300903337|ref|ZP_07121265.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 84-1]
 gi|301301546|ref|ZP_07207681.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 124-1]
 gi|300404632|gb|EFJ88170.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 84-1]
 gi|300843043|gb|EFK70803.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 124-1]
 gi|315256223|gb|EFU36191.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 85-1]
          Length = 431

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVG--------IEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE              + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLGGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|296446729|ref|ZP_06888668.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
 gi|296255732|gb|EFH02820.1| PAS/PAC sensor signal transduction histidine kinase [Methylosinus
           trichosporium OB3b]
          Length = 454

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/260 (8%), Positives = 68/260 (26%), Gaps = 46/260 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE---------------- 42
           + +     +    + +L  L + + H++ +PI  ++ ++  LD                 
Sbjct: 193 LKQAQSRLIEQEKMASLGRLVAGVAHELNNPISFVYGNIHTLDRYRKALARYLAAIHSGV 252

Query: 43  ---------------------VGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
                                  + +  ++     S       +    A      V    
Sbjct: 253 AVKEREKLRRAEDIDAVIADLEPLIEGTLEGAVRISDIVKNLRRLSFGAKTPREPVALAK 312

Query: 82  GLGDIEQVIEDFIAVDKRV--QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV--T 137
            +    Q          R+  ++         S +   +L+NL   A  ++         
Sbjct: 313 VVETATQWAARSKKAKARIVTRLEPDLLACGHSGQIHSVLVNLIDNALDAVRDAPAPLVE 372

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195
           I      +  +  +  NG         +++ +    +    +   +  +    + HE+  
Sbjct: 373 IVTHAEGSSAVVEVIDNGKGV-PDALRSRVFEPFFTTKTVGEGTGLGLWISYSIVHEHGG 431

Query: 196 RLLPEIIDDHNVVLSALLEK 215
            +  +         +  L +
Sbjct: 432 SIEIDAPPSGGARFTLRLPR 451


>gi|258510083|ref|YP_003183517.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
 gi|257476809|gb|ACV57128.1| PAS/PAC sensor signal transduction histidine kinase
           [Alicyclobacillus acidocaldarius subsp. acidocaldarius
           DSM 446]
          Length = 564

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 17/224 (7%), Positives = 64/224 (28%), Gaps = 12/224 (5%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------DEVMQL 52
            +        ++ V  L + I H+  +P+  +   ++L      E            ++ 
Sbjct: 338 REASRLRDERLEAVGQLAASIAHEFRNPLTTVMGFVQLFRSQFDELAPGAYEAIWGELER 397

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           ++  + S ++  +            +         + +     V   +      + +   
Sbjct: 398 MKDVTDSLMVLARPEAFKPIPCDLAEMARAAIGACEPLALERGVPVDLGPLPPAQVLGHP 457

Query: 113 RERAKILLNLFMVAHASLPRGGKVTI-SVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +  +++++L   A  +        +  V  ++ E I  ++  G           + +  
Sbjct: 458 GQLRQMMVHLLRNAIEAAAETRGRVVLWVTSTEAEAIVHIQDTGPGIPDS-VLEHLGEPL 516

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
             +      +    V  +  ++  ++     +      +   L 
Sbjct: 517 YHTKEKGTGLGLMVVHRIVQQHGGQIHIRRTEAPIGTAVEVRLP 560


>gi|225420050|ref|ZP_03762353.1| hypothetical protein CLOSTASPAR_06393 [Clostridium asparagiforme
           DSM 15981]
 gi|225041306|gb|EEG51552.1| hypothetical protein CLOSTASPAR_06393 [Clostridium asparagiforme
           DSM 15981]
          Length = 374

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 75/240 (31%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQ 51
           MA++I   +     S      L + + HD+ +P+ +I   LELL      +  ++ + ++
Sbjct: 122 MAEDIRQLMEKERESERTKNELITNVAHDLRTPLTSIIGYLELLAGNTRIDPEMQHKYIE 181

Query: 52  LIRLSSMSAIIRLKFMR---------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           +    S      ++ +          ++          +    +E+   +F   +    +
Sbjct: 182 IAYGKSKRLEKLIEDLFGFTKLNYGKMSMHVAQLDLVKLLGQLLEEAYPNFAEKNLSYDL 241

Query: 103 SWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                   +S +     ++  NL   A      G +V + +   +     S+   G +  
Sbjct: 242 QSNVPAKMISADGNLLARLFDNLIGNAIKYGADGKRVLVQIFAGEEVVTVSVTNYGYVIP 301

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E           + +  S+     +       +   +   +      +   V +  L+
Sbjct: 302 PDELPLIFNKFYRVERSRSSSTGGTGLGLAIAKEIVDMHGGTIGVTSDLN-GTVFTVKLQ 360


>gi|197104023|ref|YP_002129400.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
 gi|196477443|gb|ACG76971.1| sensor histidine kinase/response regulator [Phenylobacterium
           zucineum HLK1]
          Length = 616

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/230 (10%), Positives = 60/230 (26%), Gaps = 25/230 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +    +   + + H+I +P+  +    +LL     + + +  +     S    L  +  
Sbjct: 234 QANRAKSNFLATMSHEIRTPMNGVLGMAQLLKRDEADPQQIARLDTLIDSGEYLLSILND 293

Query: 70  AFGYT--------GSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER------ 115
               +                   +++++  ++       ++        + +       
Sbjct: 294 ILDVSKIDAGRLEILSRPEDLRLLLDRLVGFWVGRAIEKGLALNLTMGSGAPDFVLTDAL 353

Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFPEK---FTQ 166
              +IL NL   A      GG   I       +      FS++  G      +    F +
Sbjct: 354 RLRQILFNLVGNALKFTETGGVEVIVTGQPARDGVVLTRFSVRDTGPGIAPGDLPRLFDR 413

Query: 167 IVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              G+           +    V  LA      +  E            + 
Sbjct: 414 FSQGDEAEIRKFGGTGLGLAIVRQLAELMGGEVAVESRLGAGSTFHVEIP 463


>gi|86750880|ref|YP_487376.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           HaA2]
 gi|86573908|gb|ABD08465.1| multi-sensor hybrid histidine kinase / cell cycle control histidine
           kinase CckA [Rhodopseudomonas palustris HaA2]
          Length = 874

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 69/241 (28%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +N       MD +  L   I HD  + + AI  + + L           + +  I+ ++ 
Sbjct: 482 ENQVNQAQKMDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNAT 541

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---- 114
            A   ++ +            ++ LG+    I+  +      +VS   +           
Sbjct: 542 RAATLVRQLLAFSRKQTLRPQVLDLGEALTDIDRLLKRLIGEKVSLEMQHGRDLWRVKAD 601

Query: 115 ---RAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGN 156
                ++++NL + A  ++P G                ++      + +     +   G 
Sbjct: 602 VSQFEQVIVNLAVNARDAMPDGGKLAIRTSNVPAAEAAQLAHKGMPAADYVRIDVSDTGT 661

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 662 GI-PADIVDKIFEPFFSTKEVGKGTGLGLSTVYGIIKQTGGFVYVDSEPGKGTTFHIFLP 720

Query: 215 K 215
           +
Sbjct: 721 R 721


>gi|44888877|gb|AAS48176.1| Osmolarity-sensing histidine-kinase [Pseudomonas fluorescens]
          Length = 437

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 61/220 (27%), Gaps = 9/220 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           MA+++       +L   + + + HD+ +P+  +  SLEL+       + M        + 
Sbjct: 211 MAEDVEQAGREREL---MLAGVSHDLRTPLTRLRLSLELMGNHNDLTDDMVRDIEDMDAI 267

Query: 61  IIRLKFMRLAFGYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
           + +              +     L        +      R+++              ++L
Sbjct: 268 LDQFLAFIRDGRDEVVEEVDLTDLVREVVAPYNQNGEQVRMRLEPIQPFALRRVSMKRLL 327

Query: 120 LNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
            NL   A             +S   +    + S+   G      E    F     G+   
Sbjct: 328 NNLIGNALHHAGSDVEVAAYVSGDSTAPYVVLSVMDRGTGIDPAELEGIFNPFTRGDRAR 387

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V  +A  +   +     ++  +     L 
Sbjct: 388 GGKGTGLGLAIVRRIASMHGGNVELRNREEGGLEARVRLP 427


>gi|154247316|ref|YP_001418274.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154161401|gb|ABS68617.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 648

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 67/226 (29%), Gaps = 21/226 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLSSMSA----- 60
           S + +   L   I H+I  P+ AI ++      +LD        ++ I            
Sbjct: 412 SRLAVAGELTGSIAHEINQPLAAILSNAAAAEMMLDRGTARPGELKEILADIRRDDLRAS 471

Query: 61  ---IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR----VQVSWTGEKIDLSR 113
                    +         VD    LGD+  ++       +       V  T   +    
Sbjct: 472 EVIRRLRALLAKHEVVRQPVDLNDILGDVIALLNAEARRRRIALSARPVGETITVVGDRI 531

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIVD 169
           +  ++L+NL M A  +L    +   ++    + S  +    ++  G+     E   ++ D
Sbjct: 532 QLQQVLINLIMNAMDALADTPEEQRNIVLSLEGSATDATIRVRDRGHGI-TAEHLPKLFD 590

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +      +       L   +   +  E         +  L +
Sbjct: 591 SFFTTKRKGIGLGLSIARTLVEAHGGTITAESAPGEGATFTIQLPR 636


>gi|89097844|ref|ZP_01170731.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
 gi|89087346|gb|EAR66460.1| two-component sensor histidine kinase [Bacillus sp. NRRL B-14911]
          Length = 463

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 64/232 (27%), Gaps = 22/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           M+ +I              + I H++ +PI  I    + + +     +D+ + LI   S+
Sbjct: 232 MSSSIQKEDERKK---EFLADISHELRTPISYIKGYSDAILKGIADKDDKYLHLINRESV 288

Query: 59  SAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGE 107
                +  +                 +     + D        +   +   R  +     
Sbjct: 289 RMERLVGDLLDLSRLDTDEYQLVRMPLPLAQVIEDSLVRYTPALREKRVELRTMLDPDII 348

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KF 164
            +       +I+ N+   +     + G + I+++ S  + I ++   G+     +     
Sbjct: 349 IMGDEGRIGQIVQNIMDNSIRYTGK-GYIEITLKASNRDCILTIIDTGSGIPPEDLESIK 407

Query: 165 TQIV--DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +           +       L   +   +           ++  L 
Sbjct: 408 QRFYRVNKARTRDDGGTGLGLAIAEKLIQLHHGSISIASSPGEGTTVTIKLP 459


>gi|332140190|ref|YP_004425928.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550212|gb|AEA96930.1| PAS signal transduction protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 962

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 67/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K      S+        + + H+I +P+ AI     L  E    D+  Q +     S+
Sbjct: 257 LQKAYDEAQSANKAKTDFLATMSHEIRTPMNAIIGLTHLALETQDNDQRQQYLEKVQKSS 316

Query: 61  IIRLKFMRLAFGYTGSVDSLIGL----------------GDIEQVIEDFIAVDKRVQVSW 104
              L+ M     ++    + I +                    +  +  + +   ++ S 
Sbjct: 317 NALLELMNSILDFSKVEANKIDILDEPFTLTKTIDKLAQVFQVKAQQKQLQLLFDIRCST 376

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  S +  ++LLNL   A       G V + +    NE  FS+   G       K 
Sbjct: 377 KIRCSGDSEKIYQVLLNLLSNAIKFTET-GHVLLKIDKRGNELGFSVSDTGMGISDTGKT 435

Query: 165 TQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    D ++        +       L       L  E   +     +  L 
Sbjct: 436 KLFNAFEQADASISRKFGGTGLGLAICKRLVELMGGELTIESKVNEGTNFAFSLP 490


>gi|309789888|ref|ZP_07684466.1| histidine kinase [Oscillochloris trichoides DG6]
 gi|308228095|gb|EFO81745.1| histidine kinase [Oscillochloris trichoides DG6]
          Length = 491

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 54/214 (25%), Gaps = 23/214 (10%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEV------MQLIRLSSMSAIIRLKFMRLAFGY---- 73
           HD+ +P+  I  +   L +  I+ +V      +  I   +      +  +          
Sbjct: 268 HDLRTPLAVIKGAASNLLDASIDWDVATQRELLGSIEQQADRLNRLVSHLLEMSRIEAGA 327

Query: 74  -TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSRERAKILLNLFMVAH 127
              S D       I  V  D        Q+  +             +  ++L NL   A 
Sbjct: 328 LHQSRDWEDLYDLIHNVARDMQPRVAPAQIKLSLAADLPPVRFSYVQIEQVLTNLIENAA 387

Query: 128 ASLPRGGKVTISVQDSKN---ENIFSLKINGNL----ARFPEKFTQIVDGNVESTIDSHD 180
              P    + I  Q       +   ++   G       R       +     E       
Sbjct: 388 RYTPPDSTIEIRAQMIGQPTTQIEIAVLDRGPGVAPAIRANLFEKFVRAEAPERRAHGSG 447

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       L   +  R+  E   D     +  L 
Sbjct: 448 LGLAICKGLVEAHGGRIWAEDRPDGGSRFAFTLP 481


>gi|253581073|ref|ZP_04858333.1| sensor histidine kinase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847609|gb|EES75579.1| sensor histidine kinase [Ruminococcus sp. 5_1_39BFAA]
          Length = 383

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 74/243 (30%), Gaps = 28/243 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRL 55
           M K +  +     L+      L S I HD+ +PI A+   +E + +      E +     
Sbjct: 134 MRKRLKESAEEKVLMDKENKELISNISHDLKTPITAVKGYVEGIMDGVADTPEKIDRYVK 193

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------- 99
           +  +    +  +     +   +D+        ++  +    D                  
Sbjct: 194 TIYNKTNEMDHLINELTFYSKIDTNRIPYTFSKLNVEDYFSDCAEEVGLELETRGIELVY 253

Query: 100 -VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNL 157
              V    + I    +  +++ N+   A   + +    + I ++D  +     ++ NG  
Sbjct: 254 ANYVEDNVQVIADGEQIRRVIHNIISNAIKYMDKPKGIIQIRIKDVGDFIQVEIEDNGKG 313

Query: 158 ARFPE---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +    +V          I    V  +  ++  ++          ++  +
Sbjct: 314 IAAKDLPSIFDRFYRTDVSRNSSKGGSGIGLSIVKKILEDHGGKVWATSRLGIGTIMYFV 373

Query: 213 LEK 215
           L K
Sbjct: 374 LRK 376


>gi|229149317|ref|ZP_04277554.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
 gi|228634131|gb|EEK90723.1| hypothetical protein bcere0011_8800 [Bacillus cereus m1550]
          Length = 896

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 61/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E    +   + ++L  +  
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+    
Sbjct: 602 DTIPDLFYTDTKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 722 EGSTFTVYIP 731


>gi|242278944|ref|YP_002991073.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
 gi|242121838|gb|ACS79534.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
           DSM 2638]
          Length = 659

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 64/238 (26%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K+     ++  + +   + + H+I +PI  I   L+LL    ++ E ++ +  +  S+
Sbjct: 286 LLKSKEQAEAASKVKSEFLANMSHEIRTPINGIMGMLQLLKTTDLDAEQLEYVDYALKSS 345

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
                         +             +    +  I Q+            +  +    
Sbjct: 346 SRLSSLLIDILDLTMVEAGQLELQIAPFEIAETIDSIRQLFGQEAREKGLVLNFDISPEV 405

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFPE 162
                  +    ++L+NL   A                       +F ++  G      +
Sbjct: 406 PETVDGDALRLQQVLVNLVGNALKFTEHGRVDVEVFLNDKRAKSLLFKVRDTGIGI-ADD 464

Query: 163 KFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++ +  ++       +     +       +       +    +     V S  + 
Sbjct: 465 IQDKLFEPFIQGDGSYKRSFQGAGLGLSICKRVLKVMGGEIYVSSVLGKGTVFSFTMP 522


>gi|194366813|ref|YP_002029423.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
 gi|194349617|gb|ACF52740.1| histidine kinase [Stenotrophomonas maltophilia R551-3]
          Length = 1175

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 60/244 (24%), Gaps = 32/244 (13%)

Query: 2    AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
                   L   +L            + + H+I +P+  +    ELL    ++ +     +
Sbjct: 790  RHAYQLALHKQELAEQASAAKTRFLANLGHEIRTPMTGVLGMSELLLASPLDPQQRGYTQ 849

Query: 55   LSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                +    L                    +        L D+  ++    A        
Sbjct: 850  SIRHAGEHLLHLVNDALDLARIESGRLELQSKPFALSRLLQDLAALMGPLAAQKGLRFTL 909

Query: 104  WTG-----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-IFSLKINGNL 157
                    +    +    +ILLNL   A     RG     +  D +     F ++  G  
Sbjct: 910  DNQLPPGLQATGDAMRVRQILLNLLSNAVKFTSRGTITLHARSDGELRALHFEVRDTGPG 969

Query: 158  ARFPEKFTQIVDGNVEST-------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E+  ++     ++             +       LA   + R+  E          
Sbjct: 970  I-SQEQQQRLFRRFEQADGARTAAQYGGSGLGLAICRELAQAMQGRIQVESQLGRGTCFG 1028

Query: 211  ALLE 214
              L 
Sbjct: 1029 VTLP 1032


>gi|254385008|ref|ZP_05000342.1| two-component system sensor kinase [Streptomyces sp. Mg1]
 gi|194343887|gb|EDX24853.1| two-component system sensor kinase [Streptomyces sp. Mg1]
          Length = 384

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 55/214 (25%), Gaps = 15/214 (7%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDE------VMQLIRLSSMSAIIRLKFMRL 69
           A L + + H++ SP+ ++      L              +++ +   +      +  +  
Sbjct: 162 AELIATVAHELRSPLTSVKGFTATLLAKWERFTDDQKRLMLETVDADAGRVTRLIAELLD 221

Query: 70  AFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                          VD    +G   Q +        R  V  +    D   +  KI   
Sbjct: 222 ISRIDSGRLEVRRQPVDLATAVGRHVQALTANGQSPDRFLVRVSRPLPDCWADPDKIDQI 281

Query: 122 LFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHD 180
           L  +   ++    G VTI V   +     ++   G                  S      
Sbjct: 282 LGNLLENAVRHGDGTVTIDVSPHEKGTAVTVTDEGPGIPEESMARVFTRFWRGSKRGGTG 341

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +  Y V  +   +   +              +L 
Sbjct: 342 LGLYIVKGIVEAHGGTITVGRGHSGGAEFRFILP 375


>gi|163792793|ref|ZP_02186770.1| histidine kinase response regulator hybrid protein [alpha
           proteobacterium BAL199]
 gi|159182498|gb|EDP67007.1| histidine kinase response regulator hybrid protein [alpha
           proteobacterium BAL199]
          Length = 417

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 63/241 (26%), Gaps = 36/241 (14%)

Query: 9   LSSMDLVALLC--------SRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSS 57
           L+   + A +         + + H++ +P+ A+    ++L       +  + +  +   S
Sbjct: 171 LARAKMAAEMADRAKSEFLAHMSHELRTPLNAVIGFADMLRLQLHGPMLPQYLDSVETIS 230

Query: 58  MSAIIRLKFMRLAFGYTG--------------SVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            S    L  +                                + + + D   +  R++  
Sbjct: 231 TSGRHLLDLINDLLDLARIEAGAIELQTEPVELAALAHATARMLEPLADGRGIGMRIEGR 290

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    R   ++L+N+   A    P      I      +     ++  G      + 
Sbjct: 291 RGPRVQADRRAIQQVLINIIGNAIKFGPEDS-EIIVTFSDGDPVEIRVRDEGPGMTMRQI 349

Query: 164 FTQIVDGNVESTID---------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             + +     + I+            +       L   +  RL  +        +   L 
Sbjct: 350 -ERAMQPYGRTQIEPSHTSPSNGGTGLGLPIAHRLVELHNGRLRIDSAPGGGTTVVVSLP 408

Query: 215 K 215
           K
Sbjct: 409 K 409


>gi|85076393|ref|XP_955920.1| hypothetical protein NCU01823 [Neurospora crassa OR74A]
 gi|28916951|gb|EAA26684.1| conserved hypothetical protein [Neurospora crassa OR74A]
          Length = 2476

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 20/245 (8%), Positives = 65/245 (26%), Gaps = 33/245 (13%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS------ 56
            +N+     +    ++  + + H++ +P+  +  + ELL +  +  E +++          
Sbjct: 1944 RNVKLAEEAAKAKSIFLANVSHELRTPLNGVIGNSELLRDSNLNKEQLEMADSIRVSADL 2003

Query: 57   ----------SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                + +       +   +         E     + ++      
Sbjct: 2004 LLTVINDILDFSRMEADKMKLYIIAFNPEEMVREVVRAASYSNKEKTSKKNVKIVHDINL 2063

Query: 107  EKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLAR 159
              + +  +     ++L NL   +      G     +  DS+        F +K  G    
Sbjct: 2064 PPMLIYGDPIRLHQVLGNLIGNSLKFTEHGSITIGAKVDSETTEKATLTFWVKDTGIGIS 2123

Query: 160  FPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVV--LS 210
              +   ++                   +       L     K ++  +  ++       +
Sbjct: 2124 PQQL-DKLFLPFSQADESTARKYGGSGLGLSICKSLIESTMKGKIRLDSEENVGTTVWFT 2182

Query: 211  ALLEK 215
               +K
Sbjct: 2183 VTFDK 2187


>gi|325292298|ref|YP_004278162.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
 gi|325060151|gb|ADY63842.1| two component sensor sensor histidine kinase [Agrobacterium sp.
           H13-3]
          Length = 514

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 67/243 (27%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQL 52
           + +++    +  +      +   + + H++ +P+ A+    ++L          D   + 
Sbjct: 225 LRRDVARKAAEAESANDAKSRFLAAVSHELRTPLNAVLGFSDILAGEYFGRLENDRQREY 284

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV------------ 100
           + L   S    L  +      +        L      I + I+  + +            
Sbjct: 285 VGLIRQSGAHLLSVVNTMLDMSKLEAGRYELMMESFPIGETISSCEAMLGLQAKEKGLTL 344

Query: 101 ---QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
                   GE     R   ++L+NL   A      GG V+I           ++   G  
Sbjct: 345 TSRIQRGIGEISADQRAIRQVLINLAGNAIKFTDAGGVVSIDAAREGRMLKLTVSDTGIG 404

Query: 158 ARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +K   +    +          +   +    V  L   +              V++ 
Sbjct: 405 I-ASDKIELLGQPFMQVQNEYTRRYEGTGLGLSLVKGLVALHGGTFAITSQPGAGTVVTI 463

Query: 212 LLE 214
           +L 
Sbjct: 464 MLP 466


>gi|309389652|gb|ADO77532.1| multi-sensor signal transduction histidine kinase [Halanaerobium
           praevalens DSM 2228]
          Length = 608

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 65/225 (28%), Gaps = 23/225 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIR------ 63
           ++ +   S + H+  +P+ +++  L ++       + +E  +L+  +             
Sbjct: 376 NMKSEFVSTVSHEFRTPLTSMNMGLSMVINEDTGKLNEEQRELLEAAYEDVERLTGLVND 435

Query: 64  -----LKFMRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                             V+    +        +     +  +  +     I    +  K
Sbjct: 436 LLDLSKIESGRIEMEFDKVNINEIVEKTLDPFYKQAKEKEIALNFNKQENNIFAWADPTK 495

Query: 118 ILLNLFMVAHASLPRGGKVTISVQ--DSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
           +   +  +   +L       I ++        + S+  +G      E  ++I D  V + 
Sbjct: 496 VSWVISNLIGNALRYADNGEIEIKAEVKGRRVLVSVTDDGPGI-PKEYQSKIFDKFVRAG 554

Query: 176 ID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            D        +       +   +  R+  E  + +    S  + +
Sbjct: 555 NDKNEKSGTGLGLAISKEIITAHNGRIWVESEEGNGSTFSFYIPR 599


>gi|307310984|ref|ZP_07590629.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
 gi|307322005|ref|ZP_07601384.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|306892343|gb|EFN23150.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|306899664|gb|EFN30291.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
          Length = 595

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 76/247 (30%), Gaps = 37/247 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   +++++      + + H++ +P+ ++ +++E L        +  +M +I+   
Sbjct: 348 MTTALYDRIAAIE---NFAADVSHELKNPLTSLRSAVETLPLARNEESKKRLMDVIQHDV 404

Query: 58  MSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104
                 +  +  A              VD    LGD+ ++        K V + +     
Sbjct: 405 RRLDRLISDISDASRLDAELARADAKKVDLEKLLGDLVEISRQIRGSKKPVLLDFVVDRK 464

Query: 105 -----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA 158
                +           +I+ NL   A + +P      +     S++  I  ++ NG   
Sbjct: 465 DNPRASFIVSGYELRIGQIITNLIENARSFVPEQNGRIVVRLTRSRSRCIVYVEDNGPGI 524

Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDH-----NV 207
           +  +   +I +       +         +       +A  +   L  E I          
Sbjct: 525 QAEDI-DRIFERFYTDRPEGEDFGQNSGLGLSISRQIAEAHGGTLRAENIAGKDGRISGA 583

Query: 208 VLSALLE 214
                L 
Sbjct: 584 RFVLSLP 590


>gi|301309541|ref|ZP_07215483.1| putative two component system sensor kinase [Bacteroides sp. 20_3]
 gi|300832630|gb|EFK63258.1| putative two component system sensor kinase [Bacteroides sp. 20_3]
          Length = 781

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 300 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 359

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++               
Sbjct: 360 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDKERII 419

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 420 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 478

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 479 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 519


>gi|294810238|ref|ZP_06768902.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
 gi|294442552|gb|EFG11355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides xylanisolvens SD CC 1b]
          Length = 781

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 300 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 359

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++               
Sbjct: 360 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDKERII 419

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 420 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 478

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 479 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 519


>gi|294012871|ref|YP_003546331.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Sphingobium japonicum UT26S]
 gi|292676201|dbj|BAI97719.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Sphingobium japonicum UT26S]
          Length = 418

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/229 (9%), Positives = 62/229 (27%), Gaps = 24/229 (10%)

Query: 11  SMDLVALLCSRICHDIISPIGAIHNSLELL------DEVGIEDEVMQLIRLSSMSAIIRL 64
           +  +     +   H++ +P+  I   +E L       +       ++++   +      +
Sbjct: 178 AEKMRVDFVANASHELRTPLAGILGFIETLADPELGKDDETRQRFLKIMDGEARRMQRLI 237

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFI-AVDKRVQVSWTGEKIDLSRER 115
             +                +VD    + ++  V         + V++       +   +R
Sbjct: 238 DDLISLSRIEAEKHRLPESAVDLSGLVAEVVGVFRASHSERGRDVEMEIAPGLPEAQGDR 297

Query: 116 AKILLNLFM---VAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF---TQIV 168
           A++   L      +      G  + +S           ++   G             +  
Sbjct: 298 AQLSQLLHNLIGNSVKYGRAGTPIRVSLSDGPNGLLRLTVADEGEGIGPDHLPRLTERFY 357

Query: 169 D--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +    +    V  +   ++ RL    +      +S LL +
Sbjct: 358 RVDSGRSRAVGGTGLGLAIVKHIVERHRGRLDIASVLGKGTTISILLPR 406


>gi|294634692|ref|ZP_06713224.1| sensor histidine kinase/response regulator [Edwardsiella tarda ATCC
           23685]
 gi|291091868|gb|EFE24429.1| sensor histidine kinase/response regulator [Edwardsiella tarda ATCC
           23685]
          Length = 778

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 61/216 (28%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  + DE ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELNDEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L + E     F+   + +                +     + +       +IL NL 
Sbjct: 348 KVQLDNQEIDFTGFLTDLENLSGLLVQPKGLNFTLTPEAGLPHKIMADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A     +GG      ++  ++  F ++  G      E+                    
Sbjct: 408 GNAVKFTQQGGVSVRVWREPSDKLFFEVRDTGIGIPRDEQDKIFAMYYQVKDRNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              I       LA      ++   +       +  +
Sbjct: 468 GTGIGLAVSKRLAQAMGGDIVVSSVAGEGACFTLSI 503


>gi|218704016|ref|YP_002411535.1| sensor protein KdpD [Escherichia coli UMN026]
 gi|293403942|ref|ZP_06647936.1| sensor protein KdpD [Escherichia coli FVEC1412]
 gi|298379717|ref|ZP_06989322.1| sensor protein KdpD [Escherichia coli FVEC1302]
 gi|300901202|ref|ZP_07119305.1| histidine kinase KdpD [Escherichia coli MS 198-1]
 gi|331651699|ref|ZP_08352718.1| sensor protein KdpD [Escherichia coli M718]
 gi|218431113|emb|CAR11989.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein ; sensory histidine
           kinase [Escherichia coli UMN026]
 gi|291428528|gb|EFF01553.1| sensor protein KdpD [Escherichia coli FVEC1412]
 gi|298279415|gb|EFI20923.1| sensor protein KdpD [Escherichia coli FVEC1302]
 gi|300355375|gb|EFJ71245.1| histidine kinase KdpD [Escherichia coli MS 198-1]
 gi|331049977|gb|EGI22035.1| sensor protein KdpD [Escherichia coli M718]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|192289582|ref|YP_001990187.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|192283331|gb|ACE99711.1| PAS/PAC sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 450

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 67/259 (25%), Gaps = 46/259 (17%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDE---------- 48
           +       +    + +L  L + + H++ +PI  I+ ++  LD                 
Sbjct: 191 LQHAQRQLVEQEKMASLGRLVAGVAHELNNPISFIYGNIHTLDRYRDRMSAYLGAIHRGA 250

Query: 49  ---------------------------VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI 81
                                       ++     +       +      G +  VD   
Sbjct: 251 EPAEIERLRRDLKIDALLADYGSLIEGTLEGAMRVADVVKNLRRLSFPKSGESLRVDVDR 310

Query: 82  GLGDIEQVIEDFIAVDKRVQVSWTGEKID--LSRERAKILLNLFMVAHASLPRGGKVTIS 139
            +    +                  E        +  +I++NL   A  ++       I 
Sbjct: 311 VVRTAVRWAARAKPHHVDFAFEIAPELAILGNEGQFHQIIVNLVDNALDAVRGQSAPRIE 370

Query: 140 V--QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKI 195
           +  +   ++ + ++  NG          +I +    +    +   +  +    +A E+  
Sbjct: 371 IAARRGGDQIVITVSDNGAGLPDG-LIDKIFEPFFTTKPVGEGTGLGLWISYGIAREHGG 429

Query: 196 RLLPEIIDDHNVVLSALLE 214
            L     +    V +  L 
Sbjct: 430 TLAAANRNGGGAVFTLALP 448


>gi|153874301|ref|ZP_02002574.1| Response regulator receiver protein [Beggiatoa sp. PS]
 gi|152069234|gb|EDN67425.1| Response regulator receiver protein [Beggiatoa sp. PS]
          Length = 393

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 64/238 (26%), Gaps = 28/238 (11%)

Query: 2   AKNICF-NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            KN     L+    V L  +   HD+ +P+ AI    E++     E    ++I +     
Sbjct: 157 QKNQALVKLNQEKNVFLGIA--AHDLKNPLSAIQGYAEMIKCDFDEMPKEEIIEVIDKIY 214

Query: 61  I--IRLKFMRLAFGYTGSVD----------------SLIGLGDIEQVIEDFIAVDKRVQV 102
               ++  +        ++D                    +    Q  ++     +    
Sbjct: 215 SSSRQMFGLVKNLLDVNAIDVGKKELSLTTIDIYPILQSLIQHYRQRAKEKNIQLQCQCA 274

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                 +       +IL NL   A    P G  ++I +  S       ++  G      E
Sbjct: 275 EGEYYAMAEKNTIHQILDNLISNAVKYSPPGKSISICLAKSNEYIHCEIQDQGPGL-SEE 333

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++                S  +  + V  L    + ++  E            L 
Sbjct: 334 DQQKLFGQFTRLTAKPTGGEHSTGLGLFIVKKLVEAMQGKVWCESQLGQGATFIIKLP 391


>gi|126652242|ref|ZP_01724421.1| hypothetical protein BB14905_22488 [Bacillus sp. B14905]
 gi|126590974|gb|EAZ85086.1| hypothetical protein BB14905_22488 [Bacillus sp. B14905]
          Length = 895

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 71/237 (29%), Gaps = 23/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSS 57
           + + +        + A L   + HD+ +P+ AI  + ++L        + E  +L     
Sbjct: 659 LHEEVAREAEMEQMRANLLRAVSHDLRTPLTAISGNADILLNNAPLIPDSEKNKLYEDIY 718

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA- 116
            ++   ++ +      +   D    L    +++ED I       V          +    
Sbjct: 719 NNSKWLVQMVENLLAVSKLEDGQFALEMQLELVEDIIQEALSHVVHQNSSHTISYQIEPE 778

Query: 117 ------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       ++ +N+   A    P G  +TI V++      FS+  NG         
Sbjct: 779 FLLSLMDARLIIQVFINIIDNALTYTPPGSDITILVKECDGLVNFSISDNGPGIDDS-LK 837

Query: 165 TQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + + +      +          +       +   +   +          + +  L+K
Sbjct: 838 SSLFEPFTTGKVQRSDSRRGLGLGLALCQTILKLHGSHITVADNKPQGTIFNFSLKK 894


>gi|94263963|ref|ZP_01287765.1| Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93455635|gb|EAT05817.1| Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 914

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 58/224 (25%), Gaps = 29/224 (12%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA--------- 70
           + + H+I +P+ AI     L  +  +  +    +     SA   LK +            
Sbjct: 292 ANMSHEIRTPMNAIVGFSRLALQDELPPKPRDYLEKIDQSAHSLLKIINDILDFSKIEAG 351

Query: 71  --FGYTGSVDSLIGLGDIEQVIEDFIAVD-----KRVQVSWTGEKIDLSRERAKILLNLF 123
                    D    L ++ Q++              +        I      +++L+NL 
Sbjct: 352 KLTMEEVPFDLSEVLDNVGQMMAMRTEEKGLELLFALGPEVPPNLIGDPLRLSQVLINLT 411

Query: 124 MVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
             A     +G                E  F++K +G      E+  +I            
Sbjct: 412 NNAVKFTEQGEIVLQVSCPEPTADPVELQFAIKDSGIGMN-EEQIARIFQPFTQADDSTT 470

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA--LLEK 215
            +     +    V  L       +            S   +  +
Sbjct: 471 RSYGGTGLGLSIVRRLVESMGGEVEVSSTPGKGSTFSFNAIFPR 514


>gi|91774843|ref|YP_544599.1| multi-sensor signal transduction histidine kinase [Methylobacillus
           flagellatus KT]
 gi|91708830|gb|ABE48758.1| multi-sensor signal transduction histidine kinase [Methylobacillus
           flagellatus KT]
          Length = 442

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 69/229 (30%), Gaps = 24/229 (10%)

Query: 9   LSSMD-LVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAII 62
           +  ++ +     + + H++ +P+  +   LE L +              +++  +     
Sbjct: 199 MEKLETMRRDFIANVSHELRTPLTVVGGFLETLMDMEGAVPESTRAYFGMMQEQTGRMRR 258

Query: 63  RLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS-- 112
            ++ +                 +D    L  +             + +      + +   
Sbjct: 259 LIEDLLTLSQLENSPEAPQETEIDLGTLLNMLLHEGVSLSQGKHEITLEPVEPGLFIKGA 318

Query: 113 -RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             E    L NL   A    P+GGK+ + +    N+ +FS++  G          ++ +  
Sbjct: 319 TEELHSALGNLVSNAVRYTPQGGKINLKLFLRGNDIVFSVRDTGIGIEQQHI-DRLTERF 377

Query: 172 V------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +    V  +   ++ RL  E       + SA+L 
Sbjct: 378 YRVDRSRSRETGGTGLGLSIVKHILTRHQGRLEIESEAGKGSIFSAVLP 426


>gi|333030028|ref|ZP_08458089.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides coprosuis DSM 18011]
 gi|332740625|gb|EGJ71107.1| integral membrane sensor signal transduction histidine kinase
           [Bacteroides coprosuis DSM 18011]
          Length = 591

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 60/229 (26%), Gaps = 24/229 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
             + L   L   I H++ +P+ +I   LE + E            +Q     S      L
Sbjct: 361 EKIQLKKQLTQNIAHELKTPVSSIQGYLETIVEHPNLSEEKRISFLQRCFAQSNRLARLL 420

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQV-------IEDFIAVDKRVQVSWTGEKIDLSRERAK 117
           + + +      S D          +         +     K + V          +    
Sbjct: 421 QDLSILTRIEESSDMYDNQDMDINLLVQTILEEIELDLRKKNIIVHNELPSPIHVKGNYS 480

Query: 118 ILLNLFMVAHA-----SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
           +L ++F          +           +++     FS +  G      E   ++ +   
Sbjct: 481 LLYSIFRNLLDNSIAHAGEHIEIFLSCFKETDEYYFFSYRDTGVGI-PSEHLNRLFERFY 539

Query: 173 ------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                    +    +    V      ++  +L +  +   +     L K
Sbjct: 540 RVDKGRSRKLGGTGLGLAIVKNSILLHQGSILVKSSEGKGIEFVFTLPK 588


>gi|331016785|gb|EGH96841.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 917

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 60/242 (24%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+ +I     LL +  +       +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNSILGFTHLLQKSELTPRQFDYLATIEKSA 330

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++              V    
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                       +IL NL   A      G  V  ++ + +     +   S++  G     
Sbjct: 391 PLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGIGLSS 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLKL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|302186340|ref|ZP_07263013.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. syringae 642]
          Length = 1003

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 73/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    + D   +         
Sbjct: 528 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAVGDTHFENRNIRRALG 587

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 588 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLSVTSLLEEACSLLVMLTTEKNIELNC 647

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I     +NE +FS+  +G     
Sbjct: 648 TAAQGLVIDADPERIFQVLSNLVGNAIKFTPKGGRINIDAVADQNEVLFSVSDDGIGIPV 707

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  +   D   V S  L 
Sbjct: 708 EHLPFIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWADSSVDSGSVFSFTLP 763


>gi|325678047|ref|ZP_08157684.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
 gi|324110264|gb|EGC04443.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Ruminococcus albus 8]
          Length = 350

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 61/231 (26%), Gaps = 28/231 (12%)

Query: 13  DLVALL----------CSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
            + A L           S + H++ +P+  I N   LL                I  ++ 
Sbjct: 115 KMAAELGSVETLRTDFVSNVSHEMKTPLAVIQNYAALLGSQGLSEEDRILYASAINDATK 174

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                            + +          + +       +   +  ++D    +     
Sbjct: 175 RLAALITNILKLNKLENQQIFPESKPFDLSEQVCECILGFEERWEEKSIDIDTDIEDGVI 234

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKF 164
               S   + +  NLF  A      GGKV+ISV+ +    I S+   G           F
Sbjct: 235 ITADSELFSLVWNNLFSNAIKFTEDGGKVSISVKQTAESAIVSVSDTGCGIDPETGRHIF 294

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +   G+       + +    V  +       +            +  + K
Sbjct: 295 DKFYQGDTSHAAHGNGLGLALVKRIIDITGSEIDVTSEVGKGSTFTVTIRK 345


>gi|289665928|ref|ZP_06487509.1| two-component VirA-like sensor kinase [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 427

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 75/239 (31%), Gaps = 28/239 (11%)

Query: 3   KNICFNLS-SMDLV------ALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQ 51
           ++    L   ++L         + S I H+  + +GAI  + E+    LD      E + 
Sbjct: 37  EDEALALEHRLELARRMETLGTMASGISHNFNNIVGAIRGNAEIALSKLDPHSPASEHLL 96

Query: 52  LIRLSSMSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG- 106
            I  ++  A   ++ +    R+       V+  + L     ++   +     + +     
Sbjct: 97  EISHTTAHAYDLIESILSFGRVQNYNVQPVELNVLLQGAVSLLSVSLPSTVTIDLQQEQE 156

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTIS---------VQDSKNENIFSLKING 155
               +    +  +++LNL   A  ++   G VTI                     +  +G
Sbjct: 157 PLHAMGNPAQLQQVILNLASNAAQAMDMRGTVTIQLSAAKGSTAHGTPGRIAQLRVSDHG 216

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                P++  +I D    +      +    V  +   ++ R+  +            L 
Sbjct: 217 IGI-PPDRLDRIFDLFFTTRNGGTGLGLATVRKIIDNHEGRIEVDSALGVGTTFVVELP 274


>gi|262404177|ref|ZP_06080732.1| sensor histidine kinase [Vibrio sp. RC586]
 gi|262349209|gb|EEY98347.1| sensor histidine kinase [Vibrio sp. RC586]
          Length = 681

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 2   AKNICFNLS------SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
            K I   +       S    +   + + H+I +P+  +  + ++L +  +  +  Q +  
Sbjct: 283 QKTINLEVEKVKAQASTKAKSAFLATLSHEIRTPMNGVLGTAQILLKDELTAKQRQHLTS 342

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-------------- 101
              S    +  +     Y+        L      +   I   K +               
Sbjct: 343 LYESGEHMMTLLNEILDYSKIEQGKFELDYSSFPLRSIIGSIKSIYSSLCFEKGLKFHLN 402

Query: 102 --VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT---ISVQDSKNENIFSLKINGN 156
             ++ T           +I+ NL   A     RG              +  I  ++ +G 
Sbjct: 403 SEITDTRWYYGDKARLRQIIFNLLSNAVKFTERGFVTIGLAEEATQEGHYLIIKVQDSGI 462

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E   +I                   +    V  +A      +  +          
Sbjct: 463 GI-AKEALGRIFQPFEQAESHTTRRFGGTGLGLAIVKQIAALMNGTVSVQSEVGRGTCFE 521

Query: 211 AL 212
             
Sbjct: 522 VR 523


>gi|262165828|ref|ZP_06033565.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
 gi|262025544|gb|EEY44212.1| sensory box sensor histidine kinase/response regulator VieS [Vibrio
           mimicus VM223]
          Length = 1194

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 66/235 (28%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++    L +++      + + H++ +PI A+   +E+L      +E   L+  +  SA
Sbjct: 655 LRQSTAQALQAVEARNHFLAVVSHELRTPIAAMLGLMEILASRIKSNESQLLLTNAITSA 714

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---VDKRVQVSWTGEKIDLSRER-- 115
                 +     ++      + L      + D +              G    ++ +   
Sbjct: 715 ERLKMHVNDILDFSKIEAQQLQLDVATYHLADELCPLLRSFEATADLQGLDFIVNWQPDA 774

Query: 116 -----------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                       +I+ NL   A     +G       Q  +    F +   G     P+  
Sbjct: 775 RLLVQVDALRLNQIITNLLSNALKFTEKGSIRICVEQS-EQHFTFEVTDTGCGMTEPQIA 833

Query: 165 TQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +          ++        +    V  L       +  E   D    +   L 
Sbjct: 834 SIFQPFVQADSSITRRFGGTGLGMSIVANLVELMGGHIHVESEIDQGTTVRVSLP 888


>gi|251800059|ref|YP_003014790.1| histidine kinase [Paenibacillus sp. JDR-2]
 gi|247547685|gb|ACT04704.1| histidine kinase [Paenibacillus sp. JDR-2]
          Length = 430

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 17/213 (7%), Positives = 64/213 (30%), Gaps = 21/213 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEVGIE-----DEVMQLIRLSSMSAIIRLKFMRLAFGY---- 73
            H++ +P+  I+ + ++L     +     ++ +  I+  +         +          
Sbjct: 214 SHELRTPLAVINTNADVLLSNNDDLIRNQEKWLHHIKSETERMRTLTSDLLYLTQMDDAR 273

Query: 74  -------TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVA 126
                      +++  +    + +     +     +S          +  ++ L L   A
Sbjct: 274 ENVIFAPFNLSEAVESVILTLEAVIFEKDIALSYDISPELSINGNVEQMKQVALILLDNA 333

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTIDSHDI 181
                  GK+ ++++   +E + ++  +G           F +    +         + +
Sbjct: 334 IKYTNTKGKIDLTLKKHGSEVVLNVTNSGEGIPPEHLGKIFDRFYRADASRSRKHGGYGL 393

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +  ++K ++  + +       S  L 
Sbjct: 394 GLAIAKAIVEQHKGKIHAKSVPGETTSFSVQLP 426


>gi|168185523|ref|ZP_02620158.1| sensory box histidine kinase/response regulator [Clostridium
           botulinum C str. Eklund]
 gi|169296353|gb|EDS78486.1| sensory box histidine kinase/response regulator [Clostridium
           botulinum C str. Eklund]
          Length = 617

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
            +     +  ++ ++ L   + HD  + +  I  ++ L+    D        +  I    
Sbjct: 240 TEEELLKMEKLNSISTLAGGVAHDFNNILTIILGNISLIKTNFDAENKLYGKLINIEKII 299

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ-----VSWTGEKIDLS 112
           + A    K +      +  V  +  +GD+ +           V                 
Sbjct: 300 IQAKNLTKQLLSFSKCSNPVKKICYIGDLVKETTLLSLSGSNVCEKFYIPEDLWPAEVDI 359

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARF 160
            +  ++L NL + +  ++P GG +T+  ++                   S+K  G+    
Sbjct: 360 SQINQVLSNLIINSCQAMPNGGVITVRCRNMVLKENEIIGLAKGKYVNISIKDQGHGI-T 418

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D    +      +  +    +   +  ++  +       +    L 
Sbjct: 419 EENLLKVFDPYFTTKDTGMGLGLFSAYSIIKNHNGQISVKSHIGKGTIFQIYLP 472


>gi|21228875|ref|NP_634797.1| two component system histidine kinase [Methanosarcina mazei Go1]
 gi|20907403|gb|AAM32469.1| Two component system histidine kinase [Methanosarcina mazei Go1]
          Length = 807

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 64/244 (26%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDE---VGIEDEVM 50
            K I  NL     +A           + + H++ +P+ +I    ++L E     +  + +
Sbjct: 560 EKKITENLLHEKQMAEFANRTKSEFLANMSHELRTPLNSIIGFSDMLYEQAYGELNQKQL 619

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ--------VIEDFIAVDKRVQV 102
           + I   S S    L  +      +    + + L   E         +      +  +  +
Sbjct: 620 RAISNISNSGKHLLNLINGILDLSKIEANKMELDYKEFELASSLDLIRNILSPIADKKNI 679

Query: 103 SWTG-------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
                      +         +I+ NL   A         V I  +        +++  G
Sbjct: 680 EIETGVDSSISKICADEDRFIRIMFNLVDNAIKFSFENSLVKIGTRKKGELVEITVEDTG 739

Query: 156 NLARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +  ++                      +    V  + + +   +  +         +
Sbjct: 740 IGIKTEDQNKLFKPFSQVNSFSSKKFQGTGLGLSLVKQIVNLHGGYVWFKSEQGKGSTFA 799

Query: 211 ALLE 214
             + 
Sbjct: 800 FAIP 803


>gi|49474885|ref|YP_032926.1| two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
 gi|49237690|emb|CAF26877.1| Two-component sensor histidine kinase [Bartonella henselae str.
           Houston-1]
          Length = 594

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 81/248 (32%), Gaps = 38/248 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + +++      + + H++ +P+ ++ +++E L        +++++++I+   
Sbjct: 348 MTNALYMRIEAIE---RFAADVSHELKNPLTSLRSAVETLPLAKNEEAQEQLIEIIQHDV 404

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 +  +          A      VD  + L  +   +++     + + +S      
Sbjct: 405 RRLDRLITDISDASRLDAELARETAQIVDVTLLLESLVHAVQEVYRNRQNIDISLNIIPR 464

Query: 110 DLSRER---------AKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLAR 159
              +            +++ NL   A + +P    K+ I+++ +    +  ++ NG    
Sbjct: 465 PHGKPYLVLGHELRLGQVISNLIENARSFIPHDNGKICITMKSNAANLVLIIEDNGPGI- 523

Query: 160 FPEKFTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDH-------N 206
             E   +I +              +  +       +   +   +  E I D         
Sbjct: 524 RSENIERIFERFYTDRPSEDTFGQNSGLGLSISRQIIEAHNGTITAENIVDPELENSKTG 583

Query: 207 VVLSALLE 214
                +L 
Sbjct: 584 ARFIIVLP 591


>gi|116749724|ref|YP_846411.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698788|gb|ABK17976.1| integral membrane sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 488

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 63/243 (25%), Gaps = 32/243 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIR 54
           M + +       +L A   + + H++ +P+ AI   + LL E         + E+++++R
Sbjct: 239 MTEQLARL---EELKADFTAHVSHELRTPLTAIREGIALLLEEIPGPLSSSQKEILEVVR 295

Query: 55  LSSMSAI----------IRLKFMRLAFGYTGSVD--SLIGLGDIEQVIEDFIAVDKRVQV 102
            +                    M         +       +  ++ +        + ++ 
Sbjct: 296 GNGERLFVSISSILDLSRMEGEMMEYQYAPCDLQTLIEKSVQGLDPIARKKNIGVETIRT 355

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGN 156
                 +       +++ NL   A    P          +    ++        +   G+
Sbjct: 356 GNLPLLMLDESRMRQVIDNLMSNALKFTPEGGRISITTVLKRDDREKGRVVEVRVSDTGH 415

Query: 157 LARFPEK---FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +    F +                +       +   +  R+  E        +  
Sbjct: 416 GIPEEDVEKVFGRFYRSPHHRGKRHQGTGLGLAIARHIVTAHGGRIWAENEPASGATIVF 475

Query: 212 LLE 214
            L 
Sbjct: 476 TLP 478


>gi|67924436|ref|ZP_00517862.1| PAS [Crocosphaera watsonii WH 8501]
 gi|67853725|gb|EAM49058.1| PAS [Crocosphaera watsonii WH 8501]
          Length = 1044

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 56/250 (22%), Gaps = 36/250 (14%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L      A +         + + H+I +P+ AI    +LL     +++    +
Sbjct: 694 KKAAQEALEKAKEAAEVANKAKSEFLATMSHEIRTPMNAILGFCDLLKSKITDEKSQNYL 753

Query: 54  RLSSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
                   +                    +         +   I    +E+  E  + + 
Sbjct: 754 DSIDRIGKVLLSLIDDILDISKIEAGKLDITYEPIKLREIIIEIQRMFLEKAKEKQLQIL 813

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT-------ISVQDSKNENIFS 150
             ++V      +       +IL NL   A      G               D       +
Sbjct: 814 VNIEVEVPDVIVFDEIRLRQILFNLVGNAIKFTEEGLITISVKRDLLQWKDDQYCSLEIA 873

Query: 151 LKINGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
           +K  G      ++                      +       L       +  E     
Sbjct: 874 IKDTGIGIAPEQQKRVFDVFTQSEGQSNRKYGGTGLGLSITERLTKILGGTIQLESELGK 933

Query: 206 NVVLSALLEK 215
               + L  +
Sbjct: 934 GSTFTLLFPR 943


>gi|22127735|ref|NP_671158.1| hypothetical protein y3864 [Yersinia pestis KIM 10]
 gi|108809784|ref|YP_653700.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis Antiqua]
 gi|108813774|ref|YP_649541.1| hybrid two-component system regulatory protein [Yersinia pestis
           Nepal516]
 gi|150261078|ref|ZP_01917806.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis CA88-4125]
 gi|165926941|ref|ZP_02222773.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165936852|ref|ZP_02225418.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166009542|ref|ZP_02230440.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166213430|ref|ZP_02239465.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400568|ref|ZP_02306077.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167421127|ref|ZP_02312880.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167426511|ref|ZP_02318264.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167468067|ref|ZP_02332771.1| hybrid two-component system regulatory protein [Yersinia pestis
           FV-1]
 gi|218930961|ref|YP_002348836.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis CO92]
 gi|229839664|ref|ZP_04459823.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|229841747|ref|ZP_04461903.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229904285|ref|ZP_04519396.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis Nepal516]
 gi|270488108|ref|ZP_06205182.1| PAS domain S-box [Yersinia pestis KIM D27]
 gi|294504309|ref|YP_003568371.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis Z176003]
 gi|21960858|gb|AAM87409.1|AE013990_7 hypothetical [Yersinia pestis KIM 10]
 gi|108777422|gb|ABG19941.1| hybrid two-component system regulatory protein [Yersinia pestis
           Nepal516]
 gi|108781697|gb|ABG15755.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis Antiqua]
 gi|115349572|emb|CAL22546.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis CO92]
 gi|149290486|gb|EDM40563.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis CA88-4125]
 gi|165915094|gb|EDR33705.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921047|gb|EDR38271.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165991464|gb|EDR43765.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166205371|gb|EDR49851.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961256|gb|EDR57277.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049936|gb|EDR61344.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167054499|gb|EDR64307.1| sensory box histidine kinase/response regulator [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229678403|gb|EEO74508.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis Nepal516]
 gi|229691086|gb|EEO83139.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis biovar Orientalis str. India 195]
 gi|229696030|gb|EEO86077.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis biovar Orientalis str. PEXU2]
 gi|262363670|gb|ACY60391.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis D106004]
 gi|262367601|gb|ACY64158.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis D182038]
 gi|270336612|gb|EFA47389.1| PAS domain S-box [Yersinia pestis KIM D27]
 gi|294354768|gb|ADE65109.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis Z176003]
 gi|320017292|gb|ADW00864.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis biovar Medievalis str. Harbin 35]
          Length = 851

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
            K +   L     M  V  L   + HD  + +  I  SLEL      +       ++   
Sbjct: 482 RKALEEALVHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTATDSSDATRIHRALKAAE 541

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +      L F R    +  +V     L +++ +I   +     + +           +
Sbjct: 542 RGAQLTQRLLAFSRKQSLHPRAVAMKELLDNLDPLIRHSLPAHLTLTIEAQQPAWHAWID 601

Query: 115 RAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++   +      A  ++              +V       ++  +  +  +G+     
Sbjct: 602 VNQLENAIINLVMNARDAMEGRSGEIKIRTWNQRVERGEGRKQDMVVLEVADSGHGMTTA 661

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 662 -VKEQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVQIESEPGKGTRVCLQLPR 716


>gi|326559343|gb|EGE09770.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis 7169]
 gi|326562468|gb|EGE12786.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis 46P47B1]
 gi|326564281|gb|EGE14511.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis 103P14B1]
 gi|326567215|gb|EGE17335.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis 12P80B1]
 gi|326568280|gb|EGE18362.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis BC8]
 gi|326569980|gb|EGE20027.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis BC1]
 gi|326570062|gb|EGE20108.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis BC7]
 gi|326572916|gb|EGE22901.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis CO72]
 gi|326573838|gb|EGE23791.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis O35E]
 gi|326574742|gb|EGE24678.1| two-component system phosphate regulon sensor histidine kinase PhoR
           [Moraxella catarrhalis 101P30B1]
          Length = 348

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/227 (9%), Positives = 69/227 (30%), Gaps = 21/227 (9%)

Query: 9   LSSMD-LVALLCSRICHDIISPIGAIHNSLE--LLDEV--GIEDEVMQLIRLSSMSAIIR 63
           +  ++ +       + H++ +P+  I   LE   L +         ++L+   ++     
Sbjct: 112 MQQLEQMRTDFVGNVSHELRTPLTVILGYLENFTLTDDIKPAWMRGLKLMHEQAIRMNDL 171

Query: 64  LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------KRVQVSWTGEKIDLSRE 114
           +  + +           +   ++ +++                  + +      + +   
Sbjct: 172 INDLLMLSRLESDETKPMAEVNMPRLLMQVFDQASASNQAGHLIDIHLDTDKNILGIEAY 231

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
               ++NL + A    P GG + I  ++   +   S+  NG      E   ++ +     
Sbjct: 232 LYSAIINLVLNAIKYTPSGGMIDIIYEEDDGDVHLSVTDNGIGI-GGEHLGRLTERFYRV 290

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                       +    V  + +++  RL     +    +   +  K
Sbjct: 291 DSGRSRATGGTGLGLAIVKHVLNKHNARLEISSEEGVGSMFRIIFPK 337


>gi|325919053|ref|ZP_08181114.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
 gi|325550489|gb|EGD21282.1| signal transduction histidine kinase [Xanthomonas gardneri ATCC
           19865]
          Length = 537

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 69/224 (30%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI  + +LL+E       +  ++Q+I        
Sbjct: 307 RAESLTLSAMGRFSASLAHEIRNPLAAISYASQLLEESPDIGDADRRLLQIIHQQCQRTN 366

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113
             ++ +        +    + L    +           ++           +   +   +
Sbjct: 367 GIVESVLALARRERANPDNLDLAAFVRRFVVEYRQTLSMETDILEASIQGASVHALVDPK 426

Query: 114 ERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +IL  L   A      +    +V + V+  +   +  +   G          Q+   
Sbjct: 427 HLHQILTALVHNALKYGRVMDEPARVKLRVERLERMAVIDVIDRGPGIPET-VAAQLFRP 485

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ +L    +         LL+
Sbjct: 486 FYTTSEHGTGLGLYIAQELCRANQAQLDYVSVPGGGACFRILLQ 529


>gi|323154237|gb|EFZ40440.1| osmolarity sensor protein envZ [Escherichia coli EPECa14]
          Length = 447

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 232 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 291

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + +         + + N+ + A      
Sbjct: 292 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIDVKMHPLSIKRAVANMVVNAARY--G 349

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 350 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 409

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 410 VDNHNGMLELGTSERGGLSIRAWLP 434


>gi|300853884|ref|YP_003778868.1| putative sensor histidine kinase [Clostridium ljungdahlii DSM
           13528]
 gi|300433999|gb|ADK13766.1| predicted sensor histidine kinase [Clostridium ljungdahlii DSM
           13528]
          Length = 456

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 23/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           MA  I   L +  L     + + H++ +P+ +I      +      +       +++I  
Sbjct: 224 MADEI---LKNEKLKNEFVASVSHELRTPLTSIKGWASTMRTGDFSDKEELQTGLEIIEN 280

Query: 56  SSMSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            S      ++ +     +         D +     IE + + F     R  ++++ +  D
Sbjct: 281 ESDRLTKMVEELLDFSKFISGKITLKKDYVDIKNTIEYIKKQFSLRAWRQNINFSVKVQD 340

Query: 111 LS-------RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++L NL   A      GGKVT+         I  +   G      E 
Sbjct: 341 NMPLVLLDENRIKQVLNNLLDNAFKFTQEGGKVTLKAFVKDENLIMIVDDTGIGIPEDEL 400

Query: 164 FTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +   +   D  S+ I       +   +  ++           ++  + 
Sbjct: 401 P-KVTEKFFKGKSDKCSNGIGLSICKEIVSLHGGKIEITSELVKGTEITLTIP 452


>gi|298505766|gb|ADI84489.1| response receiver sensor histidine kinase response regulator, PAS,
           PAC and GAF domain-containing [Geobacter sulfurreducens
           KN400]
          Length = 824

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 67/244 (27%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQ 51
            K +     +  + A+  L   I HD  + +  I+    LL      D         ++Q
Sbjct: 440 KKAMDQLRQAQKMEAIGQLAGGIAHDFNNLLTVINGYSTLLIHEMPNDSPFKVEVEHILQ 499

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R        +D  + + ++E++++  I  +  +      +   +
Sbjct: 500 AGERAADLTHQLLAFSRRQILEPKYIDINLLVKNVEKMLKRLIRENIILTTRLAEQLGTV 559

Query: 112 SRERAKILLNLFM---VAHASLPRG---------------GKVTISVQDSKNENIFSLKI 153
             +  ++   +      A  ++  G                 +           + ++  
Sbjct: 560 KADPGQVEQIIMNLVVNARDAMEEGGILTIETANVELDGAFALNNPGAVPGRYIMLTVTD 619

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      E   ++ +    +        +    V  +  ++   +              
Sbjct: 620 TGIGM-SEEVRRKVFEPFFTTKAQGKGTGLGLATVYGIVKQSDGYIQVLSQPGKGSSFRV 678

Query: 212 LLEK 215
            L +
Sbjct: 679 FLPR 682


>gi|296422839|ref|XP_002840966.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295637193|emb|CAZ85157.1| unnamed protein product [Tuber melanosporum]
          Length = 1164

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/243 (9%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            KN      + +L     +   + + H+I +P+  I    +L  +  +     +++ +  
Sbjct: 697 QKNTAAR-ETAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQREMLNIVH 755

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA--------VDKRVQVSWTGEKI 109
             A   L  +      +    + + + +I   +   +               +       
Sbjct: 756 NLANSLLTIIDDILDISKIEANRMVMEEIPFSLRGTVFNALKTLAVKANERFLDLVYCVD 815

Query: 110 DLSRER--------AKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKIN 154
           ++  +          +++LNL   A                      D +    FS+   
Sbjct: 816 NVVPDHVVGDSFRLRQVILNLVGNAIKFTESGEVKLTIRQHDQSRCSDKEYCFEFSVSDT 875

Query: 155 GNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G   +              DG+         +       L +     +  +         
Sbjct: 876 GIGIQSDKLDLIFDTFCQADGSTTRKFGGTGLGLSISKKLVNLMGGDVWVKSEYGQGSTF 935

Query: 210 SAL 212
              
Sbjct: 936 YFT 938


>gi|289449811|ref|YP_003475553.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain-containing
           protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184358|gb|ADC90783.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 658

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 56/226 (24%), Gaps = 24/226 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII---------- 62
               L  S + H++ +P+  I    E L    ++++ ++ +                   
Sbjct: 185 KQRTLFVSNVSHELKTPLNTIITYSESLLNWRLKEKTIEEVTGDIQRIYSDGIRMKKLVA 244

Query: 63  ----RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDLSR 113
                      A     +   L  L           A  K + +                
Sbjct: 245 NLSLLNSLDNKAICPLMTEIDLAHLVKYCCETMQINAKAKDINLDLAVSGTIPLVFAERS 304

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDG 170
              +I+ NL   A    P  G+V++ +     E    +   G           F +    
Sbjct: 305 SLERIIFNLIENAIKYTPNTGRVSVFLNSLGEEVFLKVIDTGIGIPKESLSLIFNRFYRV 364

Query: 171 NVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +       +       LA  +  R+      +     +  L 
Sbjct: 365 DNSGSSVLGGTGLGLSIAKELADLHNGRITVSSASNAGSEFTLYLP 410


>gi|284164258|ref|YP_003402537.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284013913|gb|ADB59864.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 729

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 58/228 (25%), Gaps = 20/228 (8%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
           ++  +   ++  A   S   HD+  P+  + + L L+D            E +      +
Sbjct: 483 DLEESNERLEQFAYAAS---HDLQEPLRMVSSYLRLIDRRYGDELDEDGHEFLDFAVNGA 539

Query: 58  MSAIIRLKFMRLAFGYTGSVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                 ++ +          D         +     E +       D R+          
Sbjct: 540 DRMREMIEGLLQYSRVETRGDEFAPVDLETVLADVRENLTVKIEERDVRITTESLPRVRG 599

Query: 111 LSRERAKILLNLFMVAHASL-PRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQ 166
              +  ++  NL   A         ++ +S + +  E   S+  NG      +    F  
Sbjct: 600 DEGQLRQVFQNLVSNAIEYSGAEPPRIHVSAERNGAEWTVSVTDNGIGIEPADQERIFEV 659

Query: 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +         I       +   +   +  +         S  L 
Sbjct: 660 FQRLHDREEHPGTGIGLALCERIVERHGGEIWVDSEPGDGATFSFTLP 707


>gi|295687664|ref|YP_003591357.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
 gi|295429567|gb|ADG08739.1| PAS/PAC sensor signal transduction histidine kinase [Caulobacter
           segnis ATCC 21756]
          Length = 769

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 17/230 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQLIRL 55
           +A        +  L       + +++ +P+  I    ELL+          + V  +   
Sbjct: 527 LADRSAALDEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGLSERGRNHVAAVRAA 586

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVSW 104
           ++  A      + +A    G +   I    +  ++ +      +                
Sbjct: 587 ATQLARSIDDVLDMAQIDAGEMALEIQDIRVSDLLMNAQERALKDAQLGGVTLAVECEED 646

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
            G     ++  A+ L +L   A    P GG+VT+S + +  E    +   G         
Sbjct: 647 VGLIRGDAKRLAQTLDHLVENALRQTPPGGRVTLSARRALGEVRLDVSDTGRGV-PFHVQ 705

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I D  V        +    V  L   +   +  E    +    +  L 
Sbjct: 706 AHIFDRFVGRDRGGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLP 755


>gi|260223314|emb|CBA33753.1| hypothetical protein Csp_B20630 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 459

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 65/230 (28%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
             +    L    L           L   + H++ +P+ +I  S E+L   G         
Sbjct: 219 RADRVMRLQQARLAETQTLATAIELAGAVAHNLRNPLASIRVSAEMLQAQGDAAHTEHCT 278

Query: 54  R------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
                   +       ++  +        V  +  + D  + +   +        +  G+
Sbjct: 279 DITGAVDRADRWITELVRVSQAPQLQIERVRPVAVIRDCLEELGPEMTRRAIRWSTSQGK 338

Query: 108 KID---LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
             D    +    +I++++   A  ++P GG + ++          S+  +G      E  
Sbjct: 339 APDVLAHTAMLRQIMVSIVANAIDAMPHGGDLQVTWVVQGAALNISVTDSGIGLH-DEVR 397

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +      I    V  +  +   ++      +    +  L  
Sbjct: 398 QALFRPFFSTKSGGLGIGLALVKRMVEQWGGQITLRPAPERGTRVEMLFP 447


>gi|268318211|ref|YP_003291930.1| histidine kinase [Rhodothermus marinus DSM 4252]
 gi|262335745|gb|ACY49542.1| histidine kinase [Rhodothermus marinus DSM 4252]
          Length = 352

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 62/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           + K I       +        + H++ +PI +I    E L      +       ++ I  
Sbjct: 110 LEKEIEELKRMENYRREFLGNVSHELKTPIFSIRGFTETLLEADPGDEATRRAFLEKILR 169

Query: 56  SSMSAIIRLKFMR------------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           ++      ++ +                 +         L  +E +        +     
Sbjct: 170 NADRLANLVRDLTEISRLETGELQLQPVPFELPALVREVLESMEPLAATRQVSLRCCVPE 229

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +       ++L+NL   A      GG V + +Q+       ++  NG        
Sbjct: 230 NLPHVLGDRERLRQVLINLVDNAIKYNNPGGFVEVRLQEQDGSVRVAVVDNGIGIAPQHI 289

Query: 164 F---TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +      +         +    V  + + ++ RL  E         +  L 
Sbjct: 290 PRLTERFYRVDRSRSREQGGTGLGLAIVKHILNAHQTRLEIESTPGKGSTFAFRLP 345


>gi|225874315|ref|YP_002755774.1| sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792533|gb|ACO32623.1| sensory transduction histidine kinase [Acidobacterium capsulatum
           ATCC 51196]
          Length = 670

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 69/228 (30%), Gaps = 17/228 (7%)

Query: 1   MAKNICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           M +++   L +  + A   + + I H+I +P+ A+ N L LL     + E    +  +  
Sbjct: 431 MEQSL---LQAEKIAATGRMAATIAHEINNPLEAVMNLLYLLRPKVTDAEGRAYLANAES 487

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL------- 111
                    +   GY   V S + +       +     + R   +    +          
Sbjct: 488 ELNRVSHIAKQTLGYYREVASAVPVCLTAIAEQAVAIYEPRCMAAGIRVERRFASERKVV 547

Query: 112 --SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
               E  +++ NL   A  ++  GG++++SV+D+       +   G              
Sbjct: 548 LRRGEMMQVISNLITNAIYAMSDGGQLSVSVRDTAEGVELVVGDTGIGIAPEVLPKVFEA 607

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEII---DDHNVVLSALLE 214
                      I  +        +  R+        +     +   L 
Sbjct: 608 FFTMRPSVGTGIGLFVAKQFVEGHGGRIEIMSRREGEGRGTEVRVFLP 655


>gi|194433982|ref|ZP_03066253.1| sensor protein KdpD [Shigella dysenteriae 1012]
 gi|194417747|gb|EDX33845.1| sensor protein KdpD [Shigella dysenteriae 1012]
 gi|332096629|gb|EGJ01622.1| sensor protein kdpD [Shigella dysenteriae 155-74]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|170022784|ref|YP_001719289.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis YPIII]
 gi|169749318|gb|ACA66836.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           YPIII]
          Length = 778

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNVESTID 177
             A     +G  V    ++  +  IF ++ +G      E       + Q+ D N      
Sbjct: 408 GNAVKFTQQGKIVVRVRREGNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIK 504


>gi|218781131|ref|YP_002432449.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762515|gb|ACL04981.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 796

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 72/241 (29%), Gaps = 32/241 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSM 58
               + S  + A+  +   I HD  + +  I    E+L +      I  + ++ I  S+ 
Sbjct: 411 EKQLVQSRKMEAIGTMAGGIAHDFNNILYPILGYAEMLKDDLTPESIPYKNVEEIEKSAY 470

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A   ++ +      T      + +  I + +   +       +    +     R     
Sbjct: 471 RARDLVQQILSFSRPTEQEVVPVAVQSILEDVLRMLRAVLPSTIQINPKISRKCRMILAD 530

Query: 114 --ERAKILLNLFMVAHASLPRGGKVTIS----------------VQDSKNENIFSLKING 155
             +  ++LLNL   A+ ++   G +                        +    +++  G
Sbjct: 531 PTQIHQVLLNLCTNAYHAMLDQGGLLYISLVEEHINPSQGESVLPIAPGDYARLTVRDTG 590

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 +   +I +    + I  +   +    V+ +  + K  +  E         +  L
Sbjct: 591 CGI-SKDVIERIFEPYFTTKIAGEGTGLGLASVLAIVQKLKGHISVESKVGKGSAFNVYL 649

Query: 214 E 214
            
Sbjct: 650 P 650


>gi|146284197|ref|YP_001174350.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
 gi|145572402|gb|ABP81508.1| sensor histidine kinase/response regulator [Pseudomonas stutzeri
           A1501]
          Length = 1170

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 64/239 (26%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIRLS 56
           M +     L  +    +   + + H++ +P+ +     +LL +       D+ +Q  R  
Sbjct: 477 MLEQRADELQRASRYKSEFLANMSHELRTPLNSSLILAKLLADNPDGNLSDDQVQFARSI 536

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-------------- 102
             +    L  +      +      + +     ++   +   K + +              
Sbjct: 537 YSAGNDLLTLINDILDISKVEAGKLEVHPELTILSRLVDGMKNLFLPQAMEKALSFSVEL 596

Query: 103 --SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                       +   +IL NL   A     +G               F+++  G     
Sbjct: 597 ADDLPPTLFTDRQRLEQILKNLLANAFKFTEKGSVTLRVEPRDGGMLAFAVRDTGIGIAP 656

Query: 161 PEKFT-----QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++       +  DG          +       LA+    ++  +         + +L 
Sbjct: 657 EQQAAIFEAFRQADGTTNRRYGGTGLGLSISRELANLLGGQIEVQSAPGAGSTFTLVLP 715


>gi|78224572|ref|YP_386319.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
 gi|78195827|gb|ABB33594.1| heavy metal sensor signal transduction histidine kinase [Geobacter
           metallireducens GS-15]
          Length = 470

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 66/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRL 55
           +A      L  ++            + H++ +P+  +    E+ L      +E  +L R 
Sbjct: 228 LAITFNDTLERLEDAFRRVKQFTGDVSHELRTPLTILRGETEVGLRWAREPEEFRELFRS 287

Query: 56  SSMSAIIRLKF--------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
           +        K               ++L        D L  L    ++I+    +     
Sbjct: 288 NLEEINRMSKIIEALLELSRAEEGGLKLERVPIELEDLLGELVQQSRLIDPEKGLKIAFS 347

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A    P GG+V++ +  S      ++  +G      
Sbjct: 348 AVTPVTVTGDWLRLRQVFMNLLDNAVTYTPAGGEVSVVLDASGGFARVTVIDSGVGIPAD 407

Query: 162 E---KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +    F +    +           +    V  +   +  ++          V +  L 
Sbjct: 408 DLPHIFERFYRVDKARNRADGGCGLGLSLVRTITEAHGGKIDVVSEVGKGSVFTVYLP 465


>gi|39996755|ref|NP_952706.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983636|gb|AAR35029.1| sensory box histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 824

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/244 (9%), Positives = 67/244 (27%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIED--------EVMQ 51
            K +     +  + A+  L   I HD  + +  I+    LL      D         ++Q
Sbjct: 440 KKAMDQLRQAQKMEAIGQLAGGIAHDFNNLLTVINGYSTLLIHEMPNDSPFKVEVEHILQ 499

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R        +D  + + ++E++++  I  +  +      +   +
Sbjct: 500 AGERAADLTHQLLAFSRRQILEPKYIDINLLVKNVEKMLKRLIRENIILTTRLAEQLGTV 559

Query: 112 SRERAKILLNLFM---VAHASLPRG---------------GKVTISVQDSKNENIFSLKI 153
             +  ++   +      A  ++  G                 +           + ++  
Sbjct: 560 KADPGQVEQIIMNLVVNARDAMEEGGILTIETANVELDGAFALNNPGAVPGRYIMLTVTD 619

Query: 154 NGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G      E   ++ +    +        +    V  +  ++   +              
Sbjct: 620 TGIGM-SEEVRRKVFEPFFTTKAQGKGTGLGLATVYGIVKQSDGYIQVLSQPGKGSSFRV 678

Query: 212 LLEK 215
            L +
Sbjct: 679 FLPR 682


>gi|89094968|ref|ZP_01167898.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
 gi|89080752|gb|EAR59994.1| serine/threonine kinase with two-component sensor domain
            [Oceanospirillum sp. MED92]
          Length = 2109

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 62/237 (26%), Gaps = 25/237 (10%)

Query: 2    AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            A+       + +   ++  + + H+I +P+  I    +L+ +  +  E  + I     + 
Sbjct: 1604 AEQARHEAEAENEAKSMFLATMSHEIRTPMNGILGMAQLMKQGQLNSEQNEQIDTIYNAG 1663

Query: 61   IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---- 116
               L  +     Y+      + L +   +I+D +     +      EK            
Sbjct: 1664 QTLLSILNNILDYSKIESGQLELEEKPFLIQDVMDEIYNLFKPVAQEKSLQIVPNIERTL 1723

Query: 117  -----------KILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFP 161
                       +IL+NL   A     +G            +      F+++  G      
Sbjct: 1724 PAVSGDPRVLSQILMNLCSNALKFTHQGYIRISCEGLPDTQDKLKTRFTIEDTGIGIPEK 1783

Query: 162  EKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             +                      +       +       +  E  ++        L
Sbjct: 1784 AQSRIFQHFTQADSSITRRYGGTGLGLAITRQIIERLNGEIGFESTEEQGTTFWFEL 1840


>gi|323943098|gb|EGB39257.1| osmosensitive K+ channel protein His kinase sensor
           domain-containing protein [Escherichia coli E482]
          Length = 898

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|312962944|ref|ZP_07777430.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
 gi|311282713|gb|EFQ61308.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           fluorescens WH6]
          Length = 747

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 68/237 (28%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           +A+ +     ++     L + + HD+ +P+  I     ++      E       +     
Sbjct: 504 LARQVKREQQAVRARDDLVAVVSHDLRNPMTVISMLCGMMQKAFSSEGPHTSRRISSAID 563

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------------V 100
           +   A  R+  +      T  +++   +     +    +  +                  
Sbjct: 564 TMQQAAGRMNVLLEDLLDTSKIEAGRYVVKPVALDVSQMFEEAYSLLAPLAMEKGIDLSF 623

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                 +         ++L NL   A    PR G + IS   +  E +FS++ +G     
Sbjct: 624 NAEPGLQINGDPERLFQVLSNLIGNAIKFTPRQGNIGISAMSNGEEIVFSVRDSGEGIAP 683

Query: 161 PEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +          ++        +  Y    +   +  +++ E            + K
Sbjct: 684 EQLPYVFDRYWTQTENNPTGSGLGLYITQGIVQAHGGKIVAESEVGRGSEFRFTVPK 740


>gi|300937842|ref|ZP_07152636.1| histidine kinase KdpD [Escherichia coli MS 21-1]
 gi|300457126|gb|EFK20619.1| histidine kinase KdpD [Escherichia coli MS 21-1]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|296111274|ref|YP_003621656.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
 gi|295832806|gb|ADG40687.1| histidine protein kinase; sensor protein [Leuconostoc kimchii IMSNU
           11154]
          Length = 368

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 56/220 (25%), Gaps = 23/220 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------------MQLIRLSSMSAIIRL 64
              S + H++ +P+  +   ++LL+  G ++              MQ +       +   
Sbjct: 137 QFVSDVSHELRTPVTIVKGHMDLLNRWGKDEPEVLDDSIKSSLVEMQRMETLINEMLNLT 196

Query: 65  KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL----SRERAKILL 120
           +  ++       V  + GL          I  +                       +IL+
Sbjct: 197 RAEQIPIENIQEVTEIGGLVHRVFDNFKLIHPEFIFTFDDDLSNHANVKVRQDHMEQILI 256

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
            L   A        ++  ++  + N     ++  G      E   ++ D           
Sbjct: 257 ILADNAVKYSLERREIHFALSQTPNRVEIGVQDFGEGL-SSEDAQRVFDRFYRVDKARSR 315

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +       L       +  E         +  L 
Sbjct: 316 AKGGNGLGLSIAQRLVEAYGGEITLESALGSGSAFTIRLP 355


>gi|238797300|ref|ZP_04640801.1| Osmolarity sensor protein envZ [Yersinia mollaretii ATCC 43969]
 gi|238718937|gb|EEQ10752.1| Osmolarity sensor protein envZ [Yersinia mollaretii ATCC 43969]
          Length = 429

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIR 54
            +      + + L+A    LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 198 TRAFNQMAAGVKLLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEADGYLSESINKDIEE 257

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   +    LG++      +  V +                
Sbjct: 258 CNAIIEQFIDYLRTGQEMPTEPSELNSVLGEVIAAESGYERVIETDLCEGEVLVDIHPLS 317

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  E    F   V G+
Sbjct: 318 IKRALANMVVNAARYGNGWIKVSSGTEL--QRAWFQVEDDGPGIKPEELKHLFQPFVRGD 375

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L     +   + + A + 
Sbjct: 376 SARSTSGTGLGLAIVQRIIDAHAGSLDIGTSERGGLRIRAYIP 418


>gi|170767049|ref|ZP_02901502.1| osmolarity sensor protein EnvZ [Escherichia albertii TW07627]
 gi|170124487|gb|EDS93418.1| osmolarity sensor protein EnvZ [Escherichia albertii TW07627]
          Length = 450

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMELADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|163757825|ref|ZP_02164914.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285327|gb|EDQ35609.1| putative sensor histidine kinase transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 788

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 57/241 (23%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
            K     + +++             + + H+I +P+  I     LL +     E    IR
Sbjct: 250 RKAEAELVEALERAEAASHAKTRFLATVSHEIRTPLNGILGMTHLLSQTETTPEQASYIR 309

Query: 55  LSSMSAI-------IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---------AVDK 98
            +  S           L    +  G     +    L ++   + + +          +  
Sbjct: 310 NARESGQSLLSLIEDLLDVTSIEAGRLNLREEEGDLSELVHGVCELMASKAHEKNIEIAV 369

Query: 99  RVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
            + V              +IL NL   A      GG +     ++       +   G   
Sbjct: 370 HIAVDAPQRIASDIGRVRQILFNLVGNAIKFTESGGVLVEVSLENAALVFS-VTDTGPGL 428

Query: 159 RFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +  +K     +                +       +       +  +            +
Sbjct: 429 KETDKAKIFEEFERADNGPTRKHGGAGLGLSISARIVEALGGEIGVDSTPGKGSKFHFSV 488

Query: 214 E 214
            
Sbjct: 489 P 489


>gi|254361059|ref|ZP_04977204.1| histidine kinase [Mannheimia haemolytica PHL213]
 gi|153092545|gb|EDN73600.1| histidine kinase [Mannheimia haemolytica PHL213]
          Length = 616

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/219 (10%), Positives = 62/219 (28%), Gaps = 22/219 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++L + I H++ +P+  I    ++L +    ++  + ++  +MSA               
Sbjct: 115 SILMATISHELRTPLNGIIGLSQILLDDKTTEKQQEYLKTINMSATALAHIFGDIIDLEK 174

Query: 76  S--------------VDSLIGLGDIEQVIEDFIAVDKRVQV--SWTGEKIDLSRERAKIL 119
                             +  + +    +     ++  V+                ++IL
Sbjct: 175 IDSSRIELVRKEVEFEQLIHDIANFGHFMAGNKQINFEVKYPPDLPKYIYIDHARLSQIL 234

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQIVDGNVES---- 174
            NL   A    P  G++ + +      +  F++  +G      ++               
Sbjct: 235 WNLISNAVKFTPASGRILLEIYQLDKEQFSFAVTDSGIGIPEKDQRKIFDMFYQAENSKE 294

Query: 175 -TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  I       +A      L+    ++     +  
Sbjct: 295 KKAQGSGIGLSVSKRIAKLMGGDLVVASQENQGSTFTLT 333


>gi|77458871|ref|YP_348377.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
 gi|77382874|gb|ABA74387.1| multi-sensor hybrid histidine kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 1163

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/238 (8%), Positives = 65/238 (27%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +       S    +   + + H++ +P+ +     +LL E   E+   + ++ +    
Sbjct: 480 LEERAEELQRSSKYKSEFLANMSHELRTPLNSSLILAKLLAENPQENLSAEQVKFAESIY 539

Query: 61  II-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV------------DKRVQ 101
                        + ++    G ++ +     + ++ +    +              ++Q
Sbjct: 540 SAGNDLLNLINDILDISKVEAGKLEVMPENTSVARLADGLRGMFEPLAAVKQLAFSVQLQ 599

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                      +   +++ NL   A      G           +   F ++ +G      
Sbjct: 600 PDAPSTLFTDRQRLEQVIKNLLSNAVKFTEHGTVSLTIAGQPDDRIAFIVRDSGIGIAAD 659

Query: 162 EKF-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++       +  DG          +       LA      +          V + +L 
Sbjct: 660 QQESIFEAFRQADGTTNRKYGGTGLGLSISRDLATLLGGSISVSSAPGQGSVFTLVLP 717


>gi|16128671|ref|NP_415223.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89107553|ref|AP_001333.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE [Escherichia coli str. K-12 substr. W3110]
 gi|170080362|ref|YP_001729682.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein and sensory histidine
           kinase [Escherichia coli str. K-12 substr. DH10B]
 gi|238899961|ref|YP_002925757.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein [Escherichia coli
           BW2952]
 gi|256023704|ref|ZP_05437569.1| sensor protein KdpD [Escherichia sp. 4_1_40B]
 gi|300951199|ref|ZP_07165058.1| histidine kinase KdpD [Escherichia coli MS 116-1]
 gi|300959272|ref|ZP_07171344.1| histidine kinase KdpD [Escherichia coli MS 175-1]
 gi|301028820|ref|ZP_07191998.1| histidine kinase KdpD [Escherichia coli MS 196-1]
 gi|301645939|ref|ZP_07245850.1| histidine kinase KdpD [Escherichia coli MS 146-1]
 gi|307137301|ref|ZP_07496657.1| sensor protein KdpD [Escherichia coli H736]
 gi|331641192|ref|ZP_08342327.1| sensor protein KdpD [Escherichia coli H736]
 gi|1346374|sp|P21865|KDPD_ECOLI RecName: Full=Sensor protein kdpD
 gi|146551|gb|AAA24041.1| transmembrane protein (kdpD) [Escherichia coli]
 gi|1651302|dbj|BAA35352.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE [Escherichia coli str. K12 substr. W3110]
 gi|1786912|gb|AAC73789.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169888197|gb|ACB01904.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein and sensory histidine
           kinase [Escherichia coli str. K-12 substr. DH10B]
 gi|238861252|gb|ACR63250.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein [Escherichia coli
           BW2952]
 gi|260450150|gb|ACX40572.1| osmosensitive K+ channel signal transduction histidine kinase
           [Escherichia coli DH1]
 gi|299878182|gb|EFI86393.1| histidine kinase KdpD [Escherichia coli MS 196-1]
 gi|300314144|gb|EFJ63928.1| histidine kinase KdpD [Escherichia coli MS 175-1]
 gi|300449541|gb|EFK13161.1| histidine kinase KdpD [Escherichia coli MS 116-1]
 gi|301075798|gb|EFK90604.1| histidine kinase KdpD [Escherichia coli MS 146-1]
 gi|309700921|emb|CBJ00218.1| two-component sensor kinase [Escherichia coli ETEC H10407]
 gi|315135351|dbj|BAJ42510.1| sensor protein KdpD [Escherichia coli DH1]
 gi|331037990|gb|EGI10210.1| sensor protein KdpD [Escherichia coli H736]
 gi|332342033|gb|AEE55367.1| sensor protein kdpD [Escherichia coli UMNK88]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|330880017|gb|EGH14166.1| PAS/PAC sensor hybrid histidine kinase [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 417

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 70/255 (27%), Gaps = 41/255 (16%)

Query: 1   MAKNICFNLS---------SMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIED 47
           + +     +           M++V  L + I HD  + + A+  S  L    L     + 
Sbjct: 154 LRQREEERVQMISDRFQAQKMEIVGQLTTGIAHDFNNMLTAVTGSASLAEHYLKSDKPDH 213

Query: 48  ------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                   ++  + +       + F R     +  ++    +  + ++    +      +
Sbjct: 214 AKKHLANALRASQTAGAMTARLMAFSRRHKLGSEVINLNPLITSLIELARGSLGSKILYK 273

Query: 102 VSWTGEKIDLSRERAKIL---LNLFMVAHASLPRGGKVTISVQDSK-------------- 144
                       +  ++     NL + A  ++P GG ++I   +                
Sbjct: 274 TDLASNLWLTKVDPHQLESAVFNLMVNARDAMPAGGTISIRTSNVDVSEQMAAKGSLLVT 333

Query: 145 --NENIFSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPE 200
             +     +   G          +I +    +  +     +    V     +    L  E
Sbjct: 334 GQSCVRIQVSDTGTGMPVA-LIERIFEPFFTTKEEGKGTGLGLTMVYGYVLQAGGCLTVE 392

Query: 201 IIDDHNVVLSALLEK 215
             + H    S  + +
Sbjct: 393 SQEGHGTTFSLFMPR 407


>gi|330503212|ref|YP_004380081.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328917498|gb|AEB58329.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 656

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 65/240 (27%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +    +  +    +   + + H++ +P+  +   L+LL+   + DE  +   L++ S 
Sbjct: 272 LIQAREESEQANRAKSDFLAMMSHELRTPMNGVLGMLQLLETTSLNDEQSEYAALATEST 331

Query: 61  IIRLKFMRLAFGYTGSVD------------SLIGLGDIEQVIEDFIAVDKRVQVSWTG-- 106
              LK +     ++                  +  G I+           ++ +      
Sbjct: 332 EHLLKVINDILDFSRIERGALELEAIPFNLLELLQGSIQVFQHSAQQRGLQLLLDAQPGL 391

Query: 107 ---EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLAR 159
              E         +IL+NL   A      G     +              +++ +G    
Sbjct: 392 ERLEVRGDPTRIRQILVNLIGNALKFTEEGHIRVETHWQPLDDQVLWFTCAVRDSGIGID 451

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         D ++        +       LA      L  E       V +  + 
Sbjct: 452 GERLEHMFDAFQQADTSISRRYGGTGLGLPIARTLAERMGGTLRAESQLGKGSVFTLEIP 511


>gi|295691328|ref|YP_003595021.1| histidine kinase [Caulobacter segnis ATCC 21756]
 gi|295433231|gb|ADG12403.1| histidine kinase [Caulobacter segnis ATCC 21756]
          Length = 584

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 67/233 (28%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DE 48
           +       + +  L +L  + + + H+I  P+  I  S +    LL     E        
Sbjct: 350 LRSLQADLIQANKLASLGQITAGVAHEINQPVATIRASADNGLLLLSCGDREAAGQTLTT 409

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----W 104
           ++ +             F R A G          +     +        +   V      
Sbjct: 410 IVAMTERIGRITDELRAFSRKADGRVEPTLVTEVIDGSVLLTASRSRRQEARLVRQGEAG 469

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPE 162
               +       ++L+NL   A  ++       VT++V+D  +    ++  NG+    PE
Sbjct: 470 GLSVLGERVRLEQVLVNLLQNAFEAVEDRKDGVVTVTVRDRGDMVDVAVSDNGSGL-APE 528

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               +    + +      +       +A +    L            +  L K
Sbjct: 529 VEAALFTPFLTTKPRGLGLGLVIARDIAADFGGDLTATSAPGQGATFTLTLRK 581


>gi|294677043|ref|YP_003577658.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
 gi|294475863|gb|ADE85251.1| signal transduction histidine kinase [Rhodobacter capsulatus SB
           1003]
          Length = 892

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 58/233 (24%), Gaps = 24/233 (10%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRL 64
               ++     A   + + H++ +P+  +  +LELL E  ++     L+     +  I L
Sbjct: 355 RDAAMAGEQAQAEFVAVMSHEMRTPLNGLLGTLELLRETPLDASQAALLGSMQKAGEILL 414

Query: 65  KF----------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                             +        SV   I              ++ R         
Sbjct: 415 SHVNNTLDVERLDAGKLSLSREPFAPMSVLDEIVQMQAAGAGARGNRLETRAVGRLPDAV 474

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPEKFTQI 167
              +    ++LLNL   A      G     +       +  + +   G      E   +I
Sbjct: 475 EGDAMRIRQVLLNLVGNAIKFTRDGTITLEAEYHRDQGQLEYRVIDTGIGIPQGE-TERI 533

Query: 168 VDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            D  V              +       L    + ++  E            L 
Sbjct: 534 FDDFVTLDPELSREATGSGLGLSIARRLMRAMRGQIGVESDPGQGSAFWITLP 586


>gi|294647988|ref|ZP_06725538.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
 gi|292636661|gb|EFF55129.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bacteroides ovatus SD CC 2a]
          Length = 776

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 300 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 359

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++               
Sbjct: 360 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDKERII 419

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 420 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 478

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 479 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 519


>gi|293413974|ref|ZP_06656623.1| sensor protein KdpD [Escherichia coli B185]
 gi|291434032|gb|EFF07005.1| sensor protein KdpD [Escherichia coli B185]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGVQAEIGIDAHVEGENLQLDVWDNGPGLPQGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 SIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|229823555|ref|ZP_04449624.1| hypothetical protein GCWU000282_00853 [Catonella morbi ATCC 51271]
 gi|229786999|gb|EEP23113.1| hypothetical protein GCWU000282_00853 [Catonella morbi ATCC 51271]
          Length = 510

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 54/235 (22%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +AK+         L         H++ +P+  +   +E L             ++L+   
Sbjct: 238 LAKSREEIKRQETLRRQFMMDAAHEMRTPLTTMSGVIEGLQYDIFPEPQRKRSLELLATE 297

Query: 57  SMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I  +           +            D L  +                +     
Sbjct: 298 TQRLIRLVNENLDYEKIRTNQISLNKQTLKAYDLLCQIRTQLTAKAQEKGNRLVIDAPED 357

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
                      +I++NL   A         +T+  +   N     +   G      +  +
Sbjct: 358 LLIYGDRDRLVQIIINLVTNAIQFSEN-SDITLWGRQDGNFTELRIMDQGIGIDAKQIED 416

Query: 163 KFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    ++           I    V  L   +   +  E            L 
Sbjct: 417 IWERFYKVDISRKNTKFGESGIGLAVVKSLVEAHGGTIRVESELGQGSTFIIRLP 471


>gi|228943732|ref|ZP_04106134.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228976242|ref|ZP_04136721.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228977716|ref|ZP_04138102.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228782014|gb|EEM30206.1| hypothetical protein bthur0002_9250 [Bacillus thuringiensis Bt407]
 gi|228783487|gb|EEM31587.1| hypothetical protein bthur0003_59420 [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228815951|gb|EEM62174.1| hypothetical protein bthur0008_62740 [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 883

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 60/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E        + ++L  +  
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNHLSDDEIELATVIH 528

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+    
Sbjct: 589 DTIPNLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 648

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 709 EGSTFTVFIP 718


>gi|254445933|ref|ZP_05059409.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
 gi|198260241|gb|EDY84549.1| Two component regulator three Y motif family [Verrucomicrobiae
            bacterium DG1235]
          Length = 1132

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 46/236 (19%), Gaps = 23/236 (9%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-- 58
            M   +     S  L +   + + H+I +P+ AI     LLD+  +               
Sbjct: 881  MEAALLLAEDSERLKSAFLANVSHEIRTPMNAIVGFSSLLDDPSVTHAERSEYVELIREN 940

Query: 59   ---------------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                               R    +            +      +             + 
Sbjct: 941  SDALISLIDDIVEVSRIESRQITSKRRPFDLDLKLDELQQFFKAESGSRVTIRFLNRNLD 1000

Query: 104  WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                         +I+ +L   A     +G  V    Q      I  +   G      E 
Sbjct: 1001 RPTIIETDELLFGQIMTSLIGNAIKYTKQGS-VDFGYQIDGQNIILYVSDTGIGIPEEEH 1059

Query: 164  FTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +           +       L +     +  +            + 
Sbjct: 1060 EKIFDRFYKVTQKVSELYRGLGLGLSITKSLVNLLDGEIWLKSKPGSGSTFYVKIP 1115


>gi|196231913|ref|ZP_03130769.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
 gi|196224035|gb|EDY18549.1| PAS/PAC sensor signal transduction histidine kinase [Chthoniobacter
           flavus Ellin428]
          Length = 421

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 62/234 (26%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG-----IEDEVMQLIRLSS 57
           ++I       ++     + + H++ +P+   H  LE L +        + E+ +++R  S
Sbjct: 182 RDITRLRQLEEVRREFVANVSHELRTPLSIFHGYLENLLDAPSMPRKDQTEIFEILRKHS 241

Query: 58  MSAIIRLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                 L+ +                            GD  Q + +     +       
Sbjct: 242 RRLNALLEDLLTLARLESRQEKIACVSMKLPALLRSIGGDWSQKLANKKLALQIEAHDDL 301

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PE 162
                  +   ++L NL   A      GG + +            ++ +G        P 
Sbjct: 302 PRISADPQRLEQVLHNLLENAVKYTEPGGNIFLRAAAQNGHVEVRVEDSGQGIPPADLPH 361

Query: 163 KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +    +           +    V  +   +   +  E        +   L 
Sbjct: 362 IFERFYRADKARSREQGGTGLGLSIVKHIIQLHGGTVAAESKYGKGTTIILHLP 415


>gi|167763545|ref|ZP_02435672.1| hypothetical protein BACSTE_01920 [Bacteroides stercoris ATCC
           43183]
 gi|167698839|gb|EDS15418.1| hypothetical protein BACSTE_01920 [Bacteroides stercoris ATCC
           43183]
          Length = 802

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 65/233 (27%), Gaps = 21/233 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + ++   N   +     L + + HD+ +P+ AI    +L+            +     S+
Sbjct: 315 LEQSDKRNRELLRSRKELMASVAHDLRTPLAAIRGCAKLMPSENDVSRRTDYLDNILHSS 374

Query: 61  IIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVS-----------WT 105
              L  +     Y       V S   + ++E + E+     +   +              
Sbjct: 375 DYMLGLVNTLMEYHQLDESGVRSNNTVFNLEALFEEIADSHRLAALQKDLAFTASFSGLD 434

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                 S    +I  NL   A      G     +     N     ++  G      E+  
Sbjct: 435 AIVCCDSSHIRQIAGNLLSNALKFTFHGEVRLEAEYRPGN-LRIVVRDTGVGINAKER-E 492

Query: 166 QIVDGNV----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +I            I    +     + L +E + R+  E +       S  L 
Sbjct: 493 RIFGAFERLDSARNIPGFGLGLAITVRLVYEMQGRVEVESVPSEGSRFSVFLP 545


>gi|110597240|ref|ZP_01385528.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
 gi|110341076|gb|EAT59544.1| PAS:Response regulator receiver:GAF:ATP-binding region,
            ATPase-like:Histidine kinase A-like [Chlorobium
            ferrooxidans DSM 13031]
          Length = 1275

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/241 (8%), Positives = 62/241 (25%), Gaps = 30/241 (12%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI--------R 54
            ++       ++ +  L   I HD  + +  I    E+ +    +++ M            
Sbjct: 891  ESRLRKTQRLETIGTLAGGIAHDFNNILTPILGYAEMGELCSDKEDSMHEYFTEITKAAE 950

Query: 55   LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +       L F R +      V     + +  +++   I     ++        ++  +
Sbjct: 951  RAKNLVAQILTFSRTSESSPDIVSVQSVIEEALKLLRPSIPSTISIEQYIEQSCRNVFAD 1010

Query: 115  ---RAKILLNLFMVAHASLPRG----------------GKVTISVQDSKNENIFSLKING 155
                 +I++NL   A  ++ +                     +    +++     +   G
Sbjct: 1011 SSQIHQIIVNLCTNAFQAMEQRGGVLTIELREVKPDSDMHKMLPNLQAESYMQLRISDTG 1070

Query: 156  NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      +I +    +        +    V  +       +  E            L
Sbjct: 1071 TGM-DEAIMERIFEPFFTTKSVGKGTGLGLSVVHGIIKSFHGEITVESQPGIGSTFIVYL 1129

Query: 214  E 214
             
Sbjct: 1130 P 1130


>gi|90419743|ref|ZP_01227652.1| putative sensor histidine kinase, response regulator [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335784|gb|EAS49532.1| putative sensor histidine kinase, response regulator [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 919

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 63/237 (26%), Gaps = 29/237 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM--- 58
           AK+     ++    +   + + H+I +P+  +    E+L    I    ++   +      
Sbjct: 273 AKDEAERANAAK--SEFLATVSHEIRTPMNGMLVMAEMLSAAPIPSRYLRHAEIILRSGR 330

Query: 59  -SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV------------IEDFIAVDKRVQVSWT 105
               I    + ++    G +D       ++ +             E  +++   + V   
Sbjct: 331 GLLNILNDILDMSKIEAGRLDLEEIPLSVDTLVEDVASLFAEKAREKSLSIATMIDVDVP 390

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLAR 159
            E I      +++L NL   A      GG        +           F+++  G    
Sbjct: 391 AEVIGDPVRISQVLTNLVNNALKFTETGGVTIAVECVAAEDAGGPPMLGFTIRDTGIGIP 450

Query: 160 FPEK---FTQIVDGNVE--STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             +    F +    +           +       L       +     +        
Sbjct: 451 ADKLGKLFGRFTQADQTITRKFGGTGLGLAISKQLVEAMGGTVRVTSEEGVGSCFGF 507


>gi|117927300|ref|YP_871851.1| histidine kinase [Acidothermus cellulolyticus 11B]
 gi|117647763|gb|ABK51865.1| histidine kinase [Acidothermus cellulolyticus 11B]
          Length = 382

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 16/219 (7%), Positives = 54/219 (24%), Gaps = 24/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRLKFMRL------ 69
           + + H++ +P+GA+    E + +   +       +  +   +      +K +        
Sbjct: 135 ANVSHELKTPVGAMLLLAEAIRDAQDDPAALTHFIDRLIHEANRLSRLVKELIDLSRLQG 194

Query: 70  --AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAH 127
                    V     + D  + +                  + +  +R ++   +  +  
Sbjct: 195 GDPLPELSEVRVSDIVSDAVEPLHVRAEAAGIRLEVAIPANLCVLGDRRQLATAVTNLVE 254

Query: 128 ASLPRGGK-------VTISVQDSKNENIFSLKINGNLARFPE---KFTQIVD--GNVEST 175
            ++    +           V         ++  NG      +    F +           
Sbjct: 255 NAIVYSSRGGRVGVGARERVTPEGRIVEIAVSDNGIGIARADQERIFERFYRVDPGRSRA 314

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    V  + + +  R+            +  L 
Sbjct: 315 TGGTGLGLAIVKHIVNNHGGRISVWSKPGTGSTFTLHLP 353


>gi|67922645|ref|ZP_00516150.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
 gi|67855493|gb|EAM50747.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal:Hpt
           [Crocosphaera watsonii WH 8501]
          Length = 731

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 71/245 (28%), Gaps = 34/245 (13%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
            K     L  ++L  +   S + H+I +P+ A+     LL +  + D+  + + +   S 
Sbjct: 65  QKASEKALEELNLAKSEFLSMMGHEIRTPLNAVTGMTGLLLDTELSDQQKEFVNIIRNSG 124

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAV-----DKRVQVSW 104
              L  +     ++              +  + + ++ ++     +         ++ + 
Sbjct: 125 ENLLTMINNILDFSKIEANKLELEEAPFELGLCIEEVLRLFVSQASQKKLELAYLLEPNT 184

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTIS----------VQDSKNENIFSLKIN 154
               +  S    +IL NL   A    P G  V               +   E  F++K  
Sbjct: 185 PSGIVGDSTRLKQILANLIGNAVKFTPEGEVVIYVSSTVIEGGEGEVNPNYELRFAVKDT 244

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      E+  ++                   +       L+     ++     +     
Sbjct: 245 GIGI-PKERCHRLFQPFSQVDASTTRQYGGTGLGLVISKRLSELMGGKMWVHSEEGKGST 303

Query: 209 LSALL 213
            +  L
Sbjct: 304 FNFTL 308


>gi|320175884|gb|EFW50963.1| Osmosensitive K+ channel histidine kinase KdpD [Shigella
           dysenteriae CDC 74-1112]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|313618832|gb|EFR90715.1| sensor histidine kinase [Listeria innocua FSL S4-378]
          Length = 479

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 54/239 (22%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLS----SMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQL 52
           M + +  +               + + H++ +P+  I    E L          D  + L
Sbjct: 235 MTETLETSQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTEGLVNDIIPKSETDRCIAL 294

Query: 53  IRLSSMSAIIR-LKFMRLAFGYTGSVDSLI----------GLGDIEQVIEDFIAVDKRVQ 101
           I   +        + +      +  +               + +    +         V 
Sbjct: 295 IDTEAKRLTKLVNENLDYEKIRSNKIKLQKTRFNGREFLELIKEQLDYVATEKGNKITVD 354

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
           +              ++ +N+          G       QD K     ++   G      
Sbjct: 355 IDKDMYIYADYDRLTQVFINIVKNGVQFTEHGLITLTGTQDYKESV-LTITDTGIGMNTE 413

Query: 162 E---KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    + +    ++           I    V  L   +   +      +     +  L 
Sbjct: 414 ELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTISVTSEPNKGTTFTIRLP 472


>gi|255026540|ref|ZP_05298526.1| sensor protein ResE [Listeria monocytogenes FSL J2-003]
          Length = 350

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 110 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 165

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M           ++          L  +     V+     V+  +++  
Sbjct: 166 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELET 225

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +     +R  ++L+NL M A     + G         ++ ++++  + ++  NG+  
Sbjct: 226 PDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGI 285

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  E            
Sbjct: 286 AEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIIT 345

Query: 213 LE 214
           L 
Sbjct: 346 LP 347


>gi|254160763|ref|YP_003043871.1| sensor protein KdpD [Escherichia coli B str. REL606]
 gi|253972664|gb|ACT38335.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein [Escherichia coli B
           str. REL606]
 gi|253976858|gb|ACT42528.1| fused sensory histidine kinase in two-component regulatory system
           with KdpE: signal sensing protein [Escherichia coli
           BL21(DE3)]
          Length = 895

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 650 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 708

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 709 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 768

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 769 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 828

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 829 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 881


>gi|240138362|ref|YP_002962834.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens
           AM1]
 gi|240008331|gb|ACS39557.1| hypothetical protein MexAM1_META1p1713 [Methylobacterium extorquens
           AM1]
          Length = 1125

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 37/245 (15%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS- 59
                S+    +   + + H+I +P+  I    +LL +       +   ++LIR+S  S 
Sbjct: 582 EAERASAAK--SEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLELIRVSGESL 639

Query: 60  ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGE 107
                  L   ++  G          LG + +     +          V+ R+       
Sbjct: 640 LTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPAS 699

Query: 108 KIDLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLA 158
            +  +    ++L NL   A    P           G V  +   +     F +   G   
Sbjct: 700 VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADGGTAEALRFEISDTGIGI 759

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LS 210
              ++  ++          +        +       L       +  E  +        +
Sbjct: 760 APSQRH-RLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFT 818

Query: 211 ALLEK 215
             L +
Sbjct: 819 LALPR 823


>gi|237730129|ref|ZP_04560610.1| aerobic respiration control sensor protein ArcB [Citrobacter sp.
           30_2]
 gi|226908735|gb|EEH94653.1| aerobic respiration control sensor protein ArcB [Citrobacter sp.
           30_2]
          Length = 783

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 56/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 293 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 352

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 353 KVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 412

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A     +G     +  D  N   F ++ +G      E+                    
Sbjct: 413 SNAVKFTQQGQVTVRARYDQGNMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 472

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +          + +  
Sbjct: 473 GTGIGLAVSKRLAKNMGGDITVSSQAGKGSIFTLT 507


>gi|226357201|ref|YP_002786941.1| histidine kinase [Deinococcus deserti VCD115]
 gi|226319191|gb|ACO47187.1| putative histidine kinase, classic [Deinococcus deserti VCD115]
          Length = 963

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 57/231 (24%), Gaps = 21/231 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
            + +  +   ++  A + S   HD+  P+  I +  ELL            D  +     
Sbjct: 725 TEELERSNRDLEQFAYVAS---HDLQEPLRTITSFTELLARRYQGQLDSKADRYIHFTVD 781

Query: 56  SSMSAIIRLKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
           ++      ++ +                  S +       + ED       V        
Sbjct: 782 AARRMSSLIQDLLAFSRVGAENHQLAMVDTSQVLEDITRDLAEDLRESGAVVSWDSLPSV 841

Query: 109 IDLSRERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLA---RFPEK 163
                +  ++L NL               V IS  +      F ++ NG       F   
Sbjct: 842 YADPVQIRQLLQNLVSNGIKFQREGMVPAVHISGHEEGQVFHFQVQDNGIGIDRQYFDRI 901

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           FT     +         +       +   +  RL  E            L 
Sbjct: 902 FTVFQRLHNREKYKGTGVGLALCKRIVERHGGRLWLESKVGAGSTFHFTLP 952


>gi|254446285|ref|ZP_05059761.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260593|gb|EDY84901.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 794

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 69/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-------DEVGIEDEVMQ 51
           + +     +    L AL  + S I HD  + +  I    ELL        + G     ++
Sbjct: 418 LKETQKNLIQQESLRALGQMASGIAHDFNNLLAPILGFSELLLTVPKTMQDKGKLTSYLK 477

Query: 52  LIRLSSM---------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            I++++              R +     F      + L  + ++ +      A  K + +
Sbjct: 478 KIQVAAQDGAAVVSRLREFYRSQNSPEEFIQILPDELLWQVKELTRHRWKNQAEAKGLNI 537

Query: 103 SWTGEK------IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            +          +    E  ++  NL + A  ++ R G +T+ V D        +  +G 
Sbjct: 538 HFKMSMSSGRPIMGNEPELRQVFTNLIINAVDAMARDGDITVGVSDRDERVRIEIADSGC 597

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +   +             +    V  +   +      E  +     +     
Sbjct: 598 GMNEETRRKCLEPFYTTKGKLGTGLGLSIVFGVVQRHHGTFNIESKEGIGTRIIMEFP 655


>gi|183220974|ref|YP_001838970.1| putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911069|ref|YP_001962624.1| two component response regulator [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775745|gb|ABZ94046.1| Two component response regulator, part [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779396|gb|ABZ97694.1| Putative sensor protein [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 540

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 66/239 (27%), Gaps = 27/239 (11%)

Query: 1   MAKNICFNLSSMDL------VALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           + + +  + +  +L           + + H++ +P+ +I    +L+     +    + ++
Sbjct: 300 LERTLDLSRTKEELERAYKAKTEFLAHVSHELRTPLNSIIGFSKLIQLPENDITGKEYLQ 359

Query: 55  LSSMSAIIRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQV 102
                    LK +                         I    +E +     A    ++ 
Sbjct: 360 YIYSGGTRLLKMINEILSLMKIESGQLNLQISEFKPEEIARQSLELIQPQADAKGMEIRF 419

Query: 103 SWTGEKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
               +  ++  +     +ILLNL   A         V    +  +    FS++  G    
Sbjct: 420 FPPIQSKNIRSDAGKIQQILLNLLSNAIKY-GDHSYVEFHCEWIEGRVTFSVRDFGPGI- 477

Query: 160 FPEKFTQIVDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E  ++I            I+   +       LA +    +    +          + 
Sbjct: 478 TEEDQSRIFHSFTRLNDDGKIEGSGLGLSISQGLAEKLGGNIELTSLWGEGSTFILKIP 536


>gi|167754622|ref|ZP_02426749.1| hypothetical protein CLORAM_00124 [Clostridium ramosum DSM 1402]
 gi|237733742|ref|ZP_04564223.1| signal transduction protein kinase [Mollicutes bacterium D7]
 gi|167705454|gb|EDS20033.1| hypothetical protein CLORAM_00124 [Clostridium ramosum DSM 1402]
 gi|229383080|gb|EEO33171.1| signal transduction protein kinase [Coprobacillus sp. D7]
          Length = 405

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 68/222 (30%), Gaps = 19/222 (8%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSSMSAII 62
             +     S I H++ +P+ AI  S+E+L + GI+++          ++           
Sbjct: 182 EKMQKQFFSDISHELKTPMSAIIGSVEILQKEGIKNKDTFNEFMGILLKESYRMQNIIGD 241

Query: 63  RLKFMRLAFGY----TGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            L+  RL           VD    + D  ++ E      +   V  T  K +L  +   +
Sbjct: 242 ILELSRLEQPQATLSPALVDIDSLIKDTVELFEPLAKDKQLSLVYQTKIKEELMLDYTTV 301

Query: 119 LLNLFMVAHASLPRGG--KVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVE 173
              L  +   ++       ++I      +  I  ++  G        P  F +    +  
Sbjct: 302 KTILNNLVSNAIKYSNAGVISIKCNYKDDNLIIVVQDEGVGISKDNIPFIFDRFFQVDRS 361

Query: 174 STID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    V  +   N   +  E         +  L 
Sbjct: 362 RSKKLGTGLGLSIVKKMVELNNGTIDVESTPGIGTTFTVTLP 403


>gi|154482858|ref|ZP_02025306.1| hypothetical protein EUBVEN_00554 [Eubacterium ventriosum ATCC
           27560]
 gi|149736286|gb|EDM52172.1| hypothetical protein EUBVEN_00554 [Eubacterium ventriosum ATCC
           27560]
          Length = 474

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 71/236 (30%), Gaps = 24/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           M+K +  + +         S I HD  SP+ +I   +E + +        ++ + ++   
Sbjct: 239 MSKQLNNSRAYQK---EFISNISHDFRSPLTSIKGYIEAIMDGTIPPEDYNKYLSIVLSE 295

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGE 107
           +         +R    +  +   LI                        +  + + +  +
Sbjct: 296 ANRLEKLTSGLRDLNRWNSTGPELIFEDFNMESVIASTVDTFQGSCEKKNIELVIQFPPK 355

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
             ++  +     ++L NL   A      G K+ I + +   +   S+K  G         
Sbjct: 356 HCNVYADKGKIEQVLYNLLDNAIKFSNPGSKIIIKLYNKGEKQYCSVKDFGMGIPQDSID 415

Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + + +    ++    D     I    V  +   +   +     +         L+K
Sbjct: 416 KIWQRFYKTDLSRGRDKTGSGIGLAIVKEIIMGHNETIDVISTEGVGTEFVFSLKK 471


>gi|189424899|ref|YP_001952076.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421158|gb|ACD95556.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 641

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 57/224 (25%), Gaps = 26/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           A L  ++ H+I +P+ AI    EL  +     +  +L+   S +A               
Sbjct: 278 AFLA-QMSHEIRTPMNAISGLTELALDQAPSAQQRELLEGISHAANHLLSLINQVLDFSK 336

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               +  +           +   L    +V    +  +  +  +     I       ++L
Sbjct: 337 LEAGIVELEQIPFNLRQTLTATLLPFSVRVRSKGVRFETVLADNLPTRVIGDPTRLRQVL 396

Query: 120 LNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           +NL   A     +G             +  E    ++  G      +        +    
Sbjct: 397 VNLVGNAVKFTRQGCIEIDVEKGEQTGNHCELRIMVRDTGIGIPQEKIAQIFAPYSQAAA 456

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +    V  L    +  +  E         S  + 
Sbjct: 457 STTREFGGTGLGLSIVKQLLEVMQGTITVESQPGAGTCFSVSVP 500


>gi|187478710|ref|YP_786734.1| two component sensor kinase for C4-dicarboxylate transport
           [Bordetella avium 197N]
 gi|115423296|emb|CAJ49829.1| two component sensor kinase for C4-dicarboxylate transport
           [Bordetella avium 197N]
          Length = 642

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 60/227 (26%), Gaps = 17/227 (7%)

Query: 5   ICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE----LLDEVGIE------DEVMQL 52
               + +  L     + + + H+I  P+ AI    +     L+             + QL
Sbjct: 410 QDELVQANKLALLGQVAAGVAHEINQPLSAIRAYADNAGTFLERGDGSSALKNLRTIAQL 469

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEK 108
                        F R A  +   +     +G    ++   +     V            
Sbjct: 470 TERIGGITGELRAFSRKAAAHIAPLALRDAVGGALLLMSPRLQRQNAVLDYTPPPACLRV 529

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++L+NL   A  +     ++++ +  S++    +L  NG          ++ 
Sbjct: 530 WADRMRLEQVLVNLMQNALDATLHAPRLSLRITASEDSVELALTDNGPGI-PAHVLEKLF 588

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +  +   +       +  E    L               L +
Sbjct: 589 TPFQTTKPEGLGLGLVICRDILTECGGTLAARNGAQGGATFLMRLRR 635


>gi|90424076|ref|YP_532446.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Rhodopseudomonas palustris BisB18]
 gi|90106090|gb|ABD88127.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Rhodopseudomonas palustris BisB18]
          Length = 390

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 74/240 (30%), Gaps = 29/240 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           M + +    ++  ++A L + + H+I +P+  I  + +LL++    ++ M  +LI   + 
Sbjct: 127 MDRQLTHRSAARSVIA-LAAMLAHEIKNPLSGIRGAAQLLEQAASSEDRMLTRLICDEAD 185

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------L 111
             +  +  M +           + +  +   ++          + ++ +           
Sbjct: 186 RIVTLVDRMEVFGDERPVARGPVNIHSVLDHVKRLAQSGFARNIKFSEDYDPSLPPVLAN 245

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-----------------ENIFSLKIN 154
             +  ++ LNL   A  ++   G        +                      F +K N
Sbjct: 246 QDQLIQVFLNLVKNAAEAVVDLGTDGEIQLTTAFRPGVRLSVPGKKSRVSLPLEFCVKDN 305

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G      +    + D  V +      +    V  +  ++   +  E           LL 
Sbjct: 306 GPGV-PEDLLPNLFDPFVTTKPSGSGLGLALVAKIVGDHGGIIECESQPRK-TTFRVLLP 363


>gi|47097090|ref|ZP_00234660.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|224498603|ref|ZP_03666952.1| sensor protein ResE [Listeria monocytogenes Finland 1988]
 gi|254827168|ref|ZP_05231855.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|254831452|ref|ZP_05236107.1| sensor protein ResE [Listeria monocytogenes 10403S]
 gi|254899356|ref|ZP_05259280.1| sensor protein ResE [Listeria monocytogenes J0161]
 gi|254912505|ref|ZP_05262517.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
 gi|254936832|ref|ZP_05268529.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284802392|ref|YP_003414257.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284995534|ref|YP_003417302.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|47014535|gb|EAL05498.1| sensor histidine kinase ResE [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258599550|gb|EEW12875.1| sensor histidine kinase ResE [Listeria monocytogenes FSL N3-165]
 gi|258609428|gb|EEW22036.1| sensor histidine kinase ResE [Listeria monocytogenes F6900]
 gi|284057954|gb|ADB68895.1| hypothetical protein LM5578_2148 [Listeria monocytogenes 08-5578]
 gi|284061001|gb|ADB71940.1| hypothetical protein LM5923_2099 [Listeria monocytogenes 08-5923]
 gi|293590490|gb|EFF98824.1| sensor histidine kinase ResE [Listeria monocytogenes J2818]
          Length = 596

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 356 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 411

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M           ++          L  +     V+     V+  +++  
Sbjct: 412 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELET 471

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +     +R  ++L+NL M A     + G         ++ ++++  + ++  NG+  
Sbjct: 472 PDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGI 531

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  E            
Sbjct: 532 AEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIIT 591

Query: 213 LE 214
           L 
Sbjct: 592 LP 593


>gi|22124046|ref|NP_667469.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           KIM 10]
 gi|45443540|ref|NP_995079.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597792|ref|YP_071983.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809739|ref|YP_653655.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Antiqua]
 gi|108813597|ref|YP_649364.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Nepal516]
 gi|145597658|ref|YP_001161734.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Pestoides F]
 gi|153950296|ref|YP_001399462.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997330|ref|ZP_02022430.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CA88-4125]
 gi|165928121|ref|ZP_02223953.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165937545|ref|ZP_02226108.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166011304|ref|ZP_02232202.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166211955|ref|ZP_02237990.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400505|ref|ZP_02306014.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420652|ref|ZP_02312405.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426990|ref|ZP_02318743.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|186896982|ref|YP_001874094.1| aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930567|ref|YP_002348442.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           CO92]
 gi|229837086|ref|ZP_04457251.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Pestoides A]
 gi|229839211|ref|ZP_04459370.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229899775|ref|ZP_04514916.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904091|ref|ZP_04519202.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Nepal516]
 gi|294505322|ref|YP_003569384.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Z176003]
 gi|21956791|gb|AAM83720.1|AE013612_13 aerobic respiration sensor-response protein; histidine protein
           kinase/phosphatase [Yersinia pestis KIM 10]
 gi|45438409|gb|AAS63956.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51591074|emb|CAH22738.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pseudotuberculosis IP 32953]
 gi|108777245|gb|ABG19764.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Nepal516]
 gi|108781652|gb|ABG15710.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Antiqua]
 gi|115349178|emb|CAL22143.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CO92]
 gi|145209354|gb|ABP38761.1| PAS/PAC sensor hybrid histidine kinase [Yersinia pestis Pestoides
           F]
 gi|149288967|gb|EDM39047.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis CA88-4125]
 gi|152961791|gb|ABS49252.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pseudotuberculosis IP 31758]
 gi|165914650|gb|EDR33264.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165919895|gb|EDR37196.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165989688|gb|EDR41989.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166206701|gb|EDR51181.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961458|gb|EDR57479.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049873|gb|EDR61281.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167054030|gb|EDR63858.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|186700008|gb|ACC90637.1| multi-sensor hybrid histidine kinase [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678209|gb|EEO74314.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Nepal516]
 gi|229687267|gb|EEO79342.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229695577|gb|EEO85624.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706029|gb|EEO92038.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Pestoides A]
 gi|262363385|gb|ACY60106.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis D106004]
 gi|262367237|gb|ACY63794.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis D182038]
 gi|294355781|gb|ADE66122.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis Z176003]
 gi|320017096|gb|ADW00668.1| aerobic respiration control sensor/response regulatory protein
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 778

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNVESTID 177
             A     +G  V    ++  +  IF ++ +G      E       + Q+ D N      
Sbjct: 408 GNAVKFTQQGKIVVRVRREGNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIK 504


>gi|328873791|gb|EGG22157.1| histidine kinase [Dictyostelium fasciculatum]
          Length = 1072

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 61/242 (25%), Gaps = 30/242 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMSA 60
            +     + +  L +   + I H++ +P   I    ++ LD   +             S 
Sbjct: 681 RQAEESAIQANKLKSQFIANISHELRTPCHGILGMTQIILDSKELTPSQRDNAETIKKST 740

Query: 61  IIRLKFMRLAFGYTGSVDSLI--------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +  +     ++      +         +  +EQV+ +   +     +          
Sbjct: 741 DNLVSLIDDILDFSKIESGKMTLDFSSFELVSMVEQVLHEHSKLSNAKAIDLVFIMGREY 800

Query: 113 R----------ERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLA 158
                         +IL NL   A      G  +     + ++       FS++  G   
Sbjct: 801 PVPPVLFGDRKRIKQILSNLVSNAVKFTEAGHVLIEISTEYESGDQISLKFSVQDTGIGI 860

Query: 159 RFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              E  +Q+    +              +    V  L       L  E            
Sbjct: 861 -PHENASQLFVPFIQLDGSSSRKHGGSGLGLSIVKELVDLMGGTLSFESKKGQGSTFWFS 919

Query: 213 LE 214
           L+
Sbjct: 920 LK 921


>gi|327538058|gb|EGF24748.1| sensory transduction histidine kinase [Rhodopirellula baltica WH47]
          Length = 638

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 70/237 (29%), Gaps = 28/237 (11%)

Query: 2   AKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
            +++     + +          + + H+I +P+ AI    ++L +   + + +Q++    
Sbjct: 251 EQSLQDARDAAEAANRSRGEFLANMSHEIRTPMAAILGHADILRDHLRDPDNLQVVDTIR 310

Query: 58  MSAIIR--------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +                     + +A         +  +  +  V      +  +++  
Sbjct: 311 RNGNFLLGIINDILDLSKIDAGKLEVAKQPVRPDAIVAEVRSLMDVRAAEKKLPLQIEFD 370

Query: 104 WTGE--KIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARF 160
                     +    +IL+NL   A         ++T+   ++ +   F +   G   + 
Sbjct: 371 GPVPAVIHTDAIRIRQILVNLVGNAIKFTDEGVVRLTVRFDEANSCLQFHVIDTGIGIQS 430

Query: 161 PEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            E   ++ D  V        +     +       LAH    ++  E         + 
Sbjct: 431 DEI-DKLFDPFVQVDNTSTRSFGGTGLGLAICHRLAHALNGQVDVESQYGVGSRFTL 486


>gi|296532051|ref|ZP_06894828.1| sensory transduction protein kinase [Roseomonas cervicalis ATCC
           49957]
 gi|296267613|gb|EFH13461.1| sensory transduction protein kinase [Roseomonas cervicalis ATCC
           49957]
          Length = 630

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 26/240 (10%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ----LIR 54
            + +   L  +  + AL  +   + HD  + + AI  SLELL   G+ D   +       
Sbjct: 256 QRALEERLHQAEKMQALGTMAGGVAHDFNNLLTAILGSLELLLHSGLSDARQEKLVKNAI 315

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK---RVQVSWTGEKIDL 111
           +++       + +               +  +   +++ +        +Q S        
Sbjct: 316 MAAERGSTLTQRLLSFSRKRELQLKATDINQLVLDMDELLLRSIGQAELQRSLDAALWPA 375

Query: 112 SRERAKI---LLNLFMVAHASLPRGGKVTISVQD------------SKNENIFSLKINGN 156
             +  ++   LLNL + +  ++P GG++TI+ ++            + +    ++   G 
Sbjct: 376 MVDPEQLGLALLNLCINSRDAMPEGGRITITTRNLQVGEEAVPDLAAGDYVAIAVTDTGE 435

Query: 157 LARFPEKFTQIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                              +     +    V  L  ++               +   L +
Sbjct: 436 GMPPAILAQAFEPFFTTKEVGKGTGLGLSMVYGLTRQSGGTAAIRSAPGEGTTVELFLPR 495


>gi|302556732|ref|ZP_07309074.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus
           Tu4000]
 gi|302474350|gb|EFL37443.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces griseoflavus
           Tu4000]
          Length = 643

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 62/237 (26%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHN-----SLELLDEVGIEDEVMQLIRL 55
            +     L+ +D       S I H++ +P+  I         +L        + + +I  
Sbjct: 340 QQRRAEELAELDRAKTTFFSHISHELRTPLTLIMGPVAELRTQLAGADACVTDELDVIHR 399

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQVS 103
           + +     +  +                 VD      D+  V    +       +     
Sbjct: 400 NGLRLGKLVNSLLDFSRIEAGRMQARYEPVDLSRTTADLASVFRSAVEKAGLDFRVDCPQ 459

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        K++LNL   A       G + ++V+      + ++   G      E 
Sbjct: 460 LPEPVYVDRGMWEKVILNLLSNALKFT-FDGSIRVTVRAGDTHAVVTVADTGVGVPRQE- 517

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +           + +   I    V  L   +   +  +  +         L 
Sbjct: 518 MPRLFERFHRVENARSRSHEGSGIGLALVKELIALHGGTITADSTEGEGTRFDVRLP 574


>gi|238753717|ref|ZP_04615078.1| Sensor kinase protein rcsC [Yersinia ruckeri ATCC 29473]
 gi|238707953|gb|EEQ00310.1| Sensor kinase protein rcsC [Yersinia ruckeri ATCC 29473]
          Length = 925

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 62/220 (28%), Gaps = 22/220 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           ++  + + H++ +P+  I  +L+LL    +   V +L+   + S+ + LK +     ++ 
Sbjct: 450 SMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSDLLLKIISDILDFSK 509

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSRERAKIL 119
                + +        + I                     ++ +   E         +++
Sbjct: 510 IESEQLKIEPQAFSCVEVITHIAANYLPLVVKKRLGLYCFIEPNVPIEMNGDPVRLQQVI 569

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ES 174
            NL   +       G + + V+       F ++  G      E               + 
Sbjct: 570 SNLLNNSIKFTDT-GCIVVQVRLHGPYLEFRVQDTGVGINHKEITQLFDPFFQVGTGVQR 628

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       L +     +          + S  + 
Sbjct: 629 HFQGTGLGLAICEKLINMMDGDVEVNSEPGIGSIFSFRIP 668


>gi|227498371|ref|ZP_03928521.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226903833|gb|EEH89751.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 487

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 65/232 (28%), Gaps = 22/232 (9%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMS 59
              +     L     + + H++ +P+ +I    E++      +         LI   S  
Sbjct: 247 KRISREQEKLRREFTANVTHELKTPLTSIQGFAEMMAAGMVGKKEDVTRFGALIVKESKR 306

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVDKRVQVSWTGEKID 110
            +  +  +       G     + +              +         ++ ++ T +K+ 
Sbjct: 307 LLELINSILFLTKIEGPETQDLAVAVSLKSITESVAGFMEPVIADKKIQLHLALTEDKVM 366

Query: 111 LSRERAK-ILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLAR---FPEKF 164
              +  + ++LNL   A           VT+   ++    +F+++  G           F
Sbjct: 367 GHSDMLREVVLNLVDNAVKYNRPGGHVYVTMEKAETGRNLLFTVEDTGIGIPKDKQDRVF 426

Query: 165 TQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +           I    +    V  +  ++   +     +     +   L 
Sbjct: 427 ERFYRVEESRSKRIGGTGLGLSIVKHIIEQHHGTIALTSREHFGTKIVVTLP 478


>gi|261369013|ref|ZP_05981896.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176]
 gi|282568887|gb|EFB74422.1| sensory box histidine kinase [Subdoligranulum variabile DSM 15176]
          Length = 466

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/241 (9%), Positives = 62/241 (25%), Gaps = 28/241 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57
             +     ++  +     + + H++ +P+ +I    EL++    +          I   +
Sbjct: 225 QTDRKLRENNETMRREFTANVSHELKTPLTSISGYAELIETGMAKSEDVPAFAARIHKEA 284

Query: 58  MSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
              I  +  +              + A      VD    + +I Q      A    V + 
Sbjct: 285 RRMIALVSDILQLSELDSTQAARGQSAPPDMAPVDLAALVKEIAQ-TMTVNARKAYVTLQ 343

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS----LKINGNLAR 159
           +      +   R +++     +   ++                        ++ NG    
Sbjct: 344 YDAHPATVQGCRDQLVELTTNLCDNAIRYNRPGGHVDLRCGVGADGCPYLEVEDNGIGIP 403

Query: 160 FP---EKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  F +    +   +       +    V  +A  +  R+  +        +     
Sbjct: 404 QDSQSRVFERFYRVDKSRSKATGGTGLGLAIVKHIALLHDARIDLQSQVGTGTTIKVTFP 463

Query: 215 K 215
           K
Sbjct: 464 K 464


>gi|209917946|ref|YP_002292030.1| sensor protein KdpD [Escherichia coli SE11]
 gi|209911205|dbj|BAG76279.1| two-component sensor kinase [Escherichia coli SE11]
 gi|324016055|gb|EGB85274.1| histidine kinase KdpD [Escherichia coli MS 117-3]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHLEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|160938477|ref|ZP_02085832.1| hypothetical protein CLOBOL_03375 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438850|gb|EDP16607.1| hypothetical protein CLOBOL_03375 [Clostridium bolteae ATCC
           BAA-613]
          Length = 517

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/223 (11%), Positives = 55/223 (24%), Gaps = 23/223 (10%)

Query: 14  LVALLCSRICHDIISPIGAIHNSL-------ELLDEVGIEDEVMQLIRLSSMSAI----- 61
           L + L   I HD+ +P+ +I  +        E L           +   S          
Sbjct: 288 LRSNLLRSISHDLRTPLTSISGNAGVLMSDGENLSAEHRSRIYRDIYDDSMWLINLVENL 347

Query: 62  ----IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                           T  ++ +I                +  QV         +R   +
Sbjct: 348 LSITRMEGQGVHLHMETELLEEVIDEAMRHINRRHEHHTIRVNQVGDYILADMDARLIIQ 407

Query: 118 ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID 177
           ++ NL   A    P G  + ++ +      +  +  NG      E   +I +    +   
Sbjct: 408 VITNLVDNAVKYTPEGSTIMVNSRQEGASAVIDVSDNGPGI-PDESKEKIFEMFYTTGHK 466

Query: 178 ------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +       +   +K  +          +    L 
Sbjct: 467 SADGKRGMGLGLPLCRAILSAHKGTIEVLDNKPAGSIFRLTLP 509


>gi|119484750|ref|ZP_01619232.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119457568|gb|EAW38692.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 727

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 19/256 (7%), Positives = 62/256 (24%), Gaps = 45/256 (17%)

Query: 3   KNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRL 55
           + I  +L  +  + +   + + H++ +P+ +I    +LL           +   ++LI  
Sbjct: 312 RQINEDLERASQMKSEFLASMSHELRTPLNSILGFSDLLKRQISGELNHRQINHVKLIEK 371

Query: 56  SSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIE-QVIEDFIAVDKRVQVSWTG 106
           S    +  +                   +V+      +    +          + +    
Sbjct: 372 SGQHLLQLINDILDLSKIEAGKTELNIQAVEVHRLCNECLKMIQPRADKKRLALSLELDY 431

Query: 107 EKIDLSRERAKILLNLFM---VAHASLP-------------------RGGKVTISVQDSK 144
               ++ +  ++   +      A    P                           V  S 
Sbjct: 432 RLNQVALDERRVRQIIINLLSNAVKFTPEAGIIKLSGRLAYGSQMEGDYRPDCSPVNAST 491

Query: 145 NENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLL 198
                 ++ +G      +++  +               +   +       LA  +   + 
Sbjct: 492 PYLCLEVQDSGIGI-PEDRWHLLFRPFQQVDASLTRRHEGTGLGLALTKRLAELHGGTVS 550

Query: 199 PEIIDDHNVVLSALLE 214
            +   +        L 
Sbjct: 551 LQSDVNQGSRFRVWLP 566


>gi|118444409|ref|YP_877477.1| sensory box histidine kinase/response regulator [Clostridium novyi
           NT]
 gi|118134865|gb|ABK61909.1| sensory box histidine kinase/response regulator [Clostridium novyi
           NT]
          Length = 619

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 70/234 (29%), Gaps = 22/234 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
            +     +  ++ ++ L   + HD  + +  I  ++ L+    D      E +  I    
Sbjct: 242 TEEELLKMEKLNSISTLAGGVAHDFNNILTIILGNISLIKTNFDTENKLYEKLITIEKII 301

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SWTGEKIDLS 112
           + A    K +      +  V  +  +GD+ +   +       V                 
Sbjct: 302 LQAKDLTKQLLSFSKSSNPVKKICYIGDLIKETTNLSLSGSNVCEKSYISDDLWPVEVDV 361

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLARF 160
            +  ++L NL + +  ++P GG +T+  ++                   S+K  G     
Sbjct: 362 SQINQVLSNLIINSCQAMPNGGILTVRCKNMILKENEIVGLPKGKYVNISIKDQGYGI-S 420

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D    +      +  +    +   +   +  +       +    L 
Sbjct: 421 EENLLKVFDPYFTTKDTGMGLGLFSAYSIIKNHNGHISVKSRVGKGTIFQIYLP 474


>gi|37520383|ref|NP_923760.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35211376|dbj|BAC88755.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
          Length = 718

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 70/231 (30%), Gaps = 19/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPI-GAIHNSLELLD------EVGIEDEVMQLIRL 55
           ++I     S  L     + + HD+ +P+  A+      LD        G +  ++ +I  
Sbjct: 483 RDITAQKESERLREDFVATLTHDLRTPLLAAVQTLGFTLDGQYGPLSDGQQQILLAVIES 542

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGE 107
                 +    + +     G +                IE++     + ++ + V  +G 
Sbjct: 543 HRELLGLVESLLTIYRYEAGRMRLRKEPTDLAAFVAQGIEELRPLAQSRNQTLLVEVSGP 602

Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              +  +R ++   L      A    P GG+V + ++  +     +++  G      +  
Sbjct: 603 LPPVPCDRQQLRRVLVNLVDNALKFTPAGGRVHLRLEPFEGAVRVAVRDTGRGIPPEKSV 662

Query: 165 TQIVDGNVESTI-DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V      +      +  Y    +   +  R+  E            L 
Sbjct: 663 LLFVRFAQAESYATGTGLGLYLCRQVVEAHGGRIWAESEPGLGSTFYFTLP 713


>gi|330504152|ref|YP_004381021.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328918438|gb|AEB59269.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 916

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 57/224 (25%), Gaps = 25/224 (11%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   +++ H+I +P+  +   L+LL E  ++      +   S S    +  +     Y  
Sbjct: 409 SRFLAKMSHEIRTPLNGVLGMLQLLRETPMDRSQRFYVDTISSSGSSLMAVINDILDYAR 468

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------WTGEKIDLSRERAKIL 119
                + L  IE  +ED I+    +                                ++L
Sbjct: 469 IESGKLSLEQIEFDLEDMISETLSLFTGQALDKRLRLYVSLENGVPRRIQGDPTRLKQVL 528

Query: 120 LNLFMVAHASLPRGGK----VTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV--- 172
           +NL   A      G         S    K   +F++  +G                    
Sbjct: 529 MNLLSNALKFTAEGHVAVSVSRRSDSHGKPHLVFAVSDSGIGISEQALAQLFESFAQGDS 588

Query: 173 --ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +       L      R+  +         +  + 
Sbjct: 589 STTRRYGGSGLGLAISKELVEMMGGRIEVQSTLGQGTRFAFDIP 632


>gi|325840227|ref|ZP_08166994.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
 gi|325490375|gb|EGC92700.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Turicibacter sp. HGF1]
          Length = 461

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/229 (10%), Positives = 67/229 (29%), Gaps = 18/229 (7%)

Query: 4   NICFNLSSMD-LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM---- 58
           N+   L+  + L   L + I H++ +P+  +   L+++     E    +L+ ++      
Sbjct: 231 NLSLALNEQEMLRKQLTTDIAHELRTPLTTVKGHLDVMIAGIWEPTSERLMSINEEVVRI 290

Query: 59  -SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----- 112
              +  L+ +         ++      D   V   +    +  + +              
Sbjct: 291 SRMVDELRHLSKYDSERTKLELSKIRLDELLVSVIYNYQVQAFEKNIEIHSQIEPVIALV 350

Query: 113 --RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQI 167
             ++ +++L+NL   A      GG +T++ Q  +      +  +G           F + 
Sbjct: 351 DEKKFSQVLINLLSNAIKYTNVGGVITVTCQSDEKYIYIKVSDSGIGIPDVDLKHIFERF 410

Query: 168 VDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +           +       +   +   +               L 
Sbjct: 411 YRVDKSRSKETGGIGVGLTIAKSIVEAHGGVITVLSKLGVGSEFMIQLP 459


>gi|324116633|gb|EGC10549.1| osmosensitive K+ channel protein His kinase sensor
           domain-containing protein [Escherichia coli E1167]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTARLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|282897268|ref|ZP_06305270.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9]
 gi|281197920|gb|EFA72814.1| Multi-sensor Hybrid Histidine Kinase [Raphidiopsis brookii D9]
          Length = 1032

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 65/238 (27%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           +        ++ +  L   I HD+ + +  I  S +LL          QL+ +   +A  
Sbjct: 647 EEQFLRTQRLESIGTLACGIAHDLNNILTPILGSAQLLKRKSDHITHPQLLTMIEENATR 706

Query: 63  -------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                     F R A      V     + +I  + +        ++         +  + 
Sbjct: 707 ASSLVKQVFSFARGASSEWTIVQIKHLIFEIVNLAKHTFPKSINLKTKIANNLATVFGDS 766

Query: 116 ---AKILLNLFMVAHASLP--------------RGGKVTISVQDSKNENIFSLKINGNLA 158
               +I++NL + A  ++P               G  +        +  + ++   G   
Sbjct: 767 TELYQIMINLVVNALNAMPSGGVLTIAAENTFIDGNNLINEKLQQGHYILITIIDTGIGM 826

Query: 159 RFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I +    +  +     I    V  +  ++   L               L 
Sbjct: 827 -SQAVADKIFEPFFTTKQNGLGSGIGLSIVSRIIQKHNGHLQFYTQQGQGTKFEVFLP 883


>gi|229095062|ref|ZP_04226058.1| hypothetical protein bcere0020_3200 [Bacillus cereus Rock3-29]
 gi|228688392|gb|EEL42274.1| hypothetical protein bcere0020_3200 [Bacillus cereus Rock3-29]
          Length = 369

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 16/224 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M +     +     +  + + I H+I +P+ A+    ++  E    D +        ++ 
Sbjct: 150 MKETENLAV-----IGTMSTTIAHEIRNPLTALKGFTQMQKERNPTDTMSYDIMLQEIER 204

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKIDL 111
           +       ++  K     +      D L+ +  + +       V   +QV          
Sbjct: 205 VNGFVSELMLLGKPKPTNYERCNIRDILLYVVHLMESYATQYRVKCHLQVDGNLPAINGD 264

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
            ++  ++LLN+      S+P GG++ I   Q ++     S++  G      EK  +I   
Sbjct: 265 DKQLKQVLLNIIKNGIESMPEGGEIHIRAYQKTQGHLCISVEDQGFGI-ENEKLEKIGKA 323

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +      +       +  E++  +  +        +   L 
Sbjct: 324 FYTTKETGTGLGLMITYKIIKEHQGSITIQSSMGVGTKVEIYLP 367


>gi|227518893|ref|ZP_03948942.1| sensor histidine kinase [Enterococcus faecalis TX0104]
 gi|227073684|gb|EEI11647.1| sensor histidine kinase [Enterococcus faecalis TX0104]
          Length = 584

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 60/225 (26%), Gaps = 22/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRL 64
               +     S + H++ +P+ ++    E L     ++  + ++ + +++  +      +
Sbjct: 361 QLEKMQKDFVSNVSHELKTPVTSLLGFTETLIDGAKEDPEVLNQFLHIMQKDAQRLQQLI 420

Query: 65  KFMR----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +            A         +  +    Q       +   V      +       
Sbjct: 421 QEILELSRGSATIPYAEQEITLEKFITEILGSYQQQLAAKQLKTVVHGLPESQFFTKYEL 480

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              I+ NL   A       G++TIS      +   S++  G      +   +I +     
Sbjct: 481 FYPIVKNLIENAIQYSQENGQITISYAIENQQLRLSVQDTGIGISQKD-QERIFERFYRV 539

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                       +    V         ++  +         +  L
Sbjct: 540 DKARSRHSGGTGLGLAIVQNYTELLGGKIAIDSHLGLGTTFTITL 584


>gi|206576134|ref|YP_002239668.1| sensor protein KdpD [Klebsiella pneumoniae 342]
 gi|288936510|ref|YP_003440569.1| osmosensitive K channel His kinase sensor [Klebsiella variicola
           At-22]
 gi|206565192|gb|ACI06968.1| sensor protein KdpD [Klebsiella pneumoniae 342]
 gi|288891219|gb|ADC59537.1| Osmosensitive K channel His kinase sensor [Klebsiella variicola
           At-22]
          Length = 895

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +          L   L + + HD+ +P+  +    E+L               +E+ Q 
Sbjct: 651 EEQARLTSERESLRNSLLAALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQANEIRQH 710

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKI 109
           +  ++      L   R+  G        + L ++       +      + +Q+       
Sbjct: 711 VLNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALRMLEPSLGGQHIQLDLPDPLQ 770

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163
            +  +     ++L+NL   AH        + I  +    +    +  NG           
Sbjct: 771 LVHVDGPLFERVLINLLENAHKYAGARANIGIRAEADARQLSLEVWDNGPGIPAGQEQAI 830

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +   +      +        L 
Sbjct: 831 FDKFARGNKESAIPGVGLGLAICQAIVDVHGGTISASNRPEGGASFRVTLP 881


>gi|204930056|ref|ZP_03221077.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
 gi|204321050|gb|EDZ06251.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Javiana str. GA_MM04042433]
          Length = 894

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES++    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESSVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|146280745|ref|YP_001170898.1| nitrogen regulation protein NtrB [Pseudomonas stutzeri A1501]
 gi|145568950|gb|ABP78056.1| nitrogen regulation protein NtrB [Pseudomonas stutzeri A1501]
          Length = 414

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 25/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                LS  +   +L   + H+I +P+G I  + +LL     E+ +     +    A   
Sbjct: 175 KEEAQLSKQETTKMLVRGLAHEIKNPLGGIRGAAQLLARELPEEHLKDYTEVIIEEADRL 234

Query: 64  LKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +    G          +    L  +  +IE        +   +     ++  +R ++
Sbjct: 235 RNLVDRMLGSNKLPSLAMTNIHEVLEHVASLIEAECQGSIILVRDYDPSIPEVLMDREQM 294

Query: 119 LLNLFMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +  +   ++                      + TI     +      +  NG     
Sbjct: 295 IQAVLNIMRNAMQALAGQNELGLGRLTLRTRTLRQFTIGHIRHRLVARIEIIDNGPGI-P 353

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V    D   +       +  +++  +  E    H  V S  L 
Sbjct: 354 AELQNTLFYPMVSGRPDGTGLGLAITQNIISQHQGLIECESHPGH-TVFSIFLP 406


>gi|144898721|emb|CAM75585.1| Signal transduction histidine kinase [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 752

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 21/225 (9%), Positives = 51/225 (22%), Gaps = 23/225 (10%)

Query: 13  DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR--------- 63
              +   + + H+I +P+  I    ELL + G+  E ++  +    SA            
Sbjct: 246 KAKSEFLATMSHEIRTPMNGIVGMTELLIDTGLTPERLKFAQTIRTSAESLLTILNDILD 305

Query: 64  -------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
                                          ++    + +   ++ S  G  +       
Sbjct: 306 FSKLEAGHLHFESVEFDLSLQVEDAIDIVAPRLRGRNVDLVYWIEPSLRGRYLGDPVRLR 365

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE--- 173
           +++LNL   A      G               F++   G       + +           
Sbjct: 366 QVILNLLGNAAKFTEFGVVSIHVASGQGGRLRFAVTDTGIGIPQAAQASLFGMFAQADSS 425

Query: 174 --STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LSALLE 214
                    +       +       +     +          +L 
Sbjct: 426 TARRFGGTGLGLAICRRIVEGMGGDIGFFSEEGKGSTFWFEVMLP 470


>gi|144899289|emb|CAM76153.1| Bacteriophytochrome (light-regulated signal transduction histidine
           kinase) [Magnetospirillum gryphiswaldense MSR-1]
          Length = 753

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 70/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELL----------DEVG 44
           + +     L ++ L       +   + + H++ +P+ A+    E+L           +  
Sbjct: 505 LRQLRTIRLLNLQLAESDRAKSRFLAHMSHELRTPLNAVLGFSEMLGMGIYGQVVQRQSE 564

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL-----GDIEQVIEDFIAVDKR 99
               V    R         L   ++  G     D  + +        + +       +  
Sbjct: 565 AIGHVRDAARHLLNMINDVLDLSKIEAGGFDIEDEELEISALATYAQQLLSSLTREAEVT 624

Query: 100 VQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
           ++V        L  +R    +IL+NL   A    P  G V +  ++  +    ++   G 
Sbjct: 625 IRVEVPSALPRLRADRRMLLQILINLLSNAIKFTPPQGSVHVGCREDASGLCLTVHDTGI 684

Query: 157 LARFPEKFTQIVDGNVEST------IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                +   ++++   ++            +    V  L   +   +           ++
Sbjct: 685 GIAADQL-ARVLEPFRQTEDNMEIARKGTGLGLPIVKSLVELHGGTIHLSSTLGQGTCVT 743

Query: 211 ALLE 214
               
Sbjct: 744 LTFP 747


>gi|189425738|ref|YP_001952915.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
 gi|189421997|gb|ACD96395.1| integral membrane sensor hybrid histidine kinase [Geobacter lovleyi
           SZ]
          Length = 827

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 65/239 (27%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N     +     +   + + H+I +P+  +   L+LL    + DE    +     SA 
Sbjct: 435 ARNAADAANQNK--SEFLANMSHEIRNPMNGVIGMLQLLRFTELTDEQKDYLSAIETSAD 492

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                + ++        + + L    +  E  + V+ R+     
Sbjct: 493 DLLAIINDILDLSKIEAGKIELEISRFSLRRCINDVLLMQTSRAFEKGVQVEARLDEQLP 552

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARFP 161
            E         ++LLNL   A      G           QD  +    ++   G     P
Sbjct: 553 LEVYGDQLRVKQVLLNLLGNAVKFTEEGTISIEARLLQKQDDNSIVQITVSDTGIGM-SP 611

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ D  +              +       LA     R+     +         L 
Sbjct: 612 EVLGKVFDPFIQADVCTTRRFGGTGLGLTICRQLAELMGGRISATSEEGKGSQFYLELP 670


>gi|110598173|ref|ZP_01386450.1| PAS:Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
 gi|110340187|gb|EAT58685.1| PAS:Response regulator receiver:GAF:ATP-binding region,
           ATPase-like:Histidine kinase A-like [Chlorobium
           ferrooxidans DSM 13031]
          Length = 1014

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 67/243 (27%), Gaps = 30/243 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLS 56
           M ++       ++ +  L   I HD  + +  I    E+    L       E    I ++
Sbjct: 627 MLESRLRKSQRLETIGTLAGGIAHDFNNLLTPILGYAEMGIMNLSSEEPLHEYFNEIMMA 686

Query: 57  SMSAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +  A   +     F +     T  V     + +  +++   I V   ++        ++ 
Sbjct: 687 AERARHLVSQILTFSKSQESTTAIVSVQAVIEEALKLLRPSIPVTIGIEQHIDTNCRNIL 746

Query: 113 RER---AKILLNLFMVAHASL----------------PRGGKVTISVQDSKNENIFSLKI 153
            +     ++++NL   A  ++                    +      D+K     ++  
Sbjct: 747 ADSSKLHQVIVNLCTNAFQAMEASGGVLTIELREIMLDNNTQRLFPKLDAKRCLQLTVSD 806

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G          +I +    + +      +    V  +    +  +  E           
Sbjct: 807 TGTGM-DEATMERIFEPFFTTKMVNKGTGLGLSVVHGIIKSFRGEIAVESHVGKGTSFKI 865

Query: 212 LLE 214
            L 
Sbjct: 866 YLP 868


>gi|260682520|ref|YP_003213805.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260686119|ref|YP_003217252.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|260208683|emb|CBA61472.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260212135|emb|CBE02771.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 311

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 24/232 (10%), Positives = 70/232 (30%), Gaps = 21/232 (9%)

Query: 3   KNICFNLSSMDLVA-LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI-RLSSMSA 60
           +N   +L   D  +  L + + HD+ +P+  +   L+ +    +  +  +    ++   A
Sbjct: 79  ENKLLSLKKSDKASKQLMTSLSHDVRTPLTTLIGYLDAVHSGIVIGQEREEYLEIARRRA 138

Query: 61  IIRLKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                ++ + F +                  +    +      I     ++  + +    
Sbjct: 139 YDLKDYIDVLFDWFRLNSDEFTLSIESVEIAELSRNILKDWIPIFHEKKLNFEIDIPENR 198

Query: 107 EKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPE 162
             ++L  +  ++++ NL     A            +DS    +  +  +G        P 
Sbjct: 199 LMVNLDPDGYSRVVNNLVQNVLAHSKARQIKITMSEDS-RMVLLRVDDDGVGIARENLPH 257

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F ++   +   +     +    V  +      ++  E       V +  L 
Sbjct: 258 IFERLYKCDKGRSEKGSGLGLSIVSQMVERMGGQISVESEIGKYTVFTVSLP 309


>gi|92116063|ref|YP_575792.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91798957|gb|ABE61332.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14]
          Length = 607

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 66/246 (26%), Gaps = 35/246 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + +++      + + H++ +P+ ++ +++E L           ++++I    
Sbjct: 361 MTDALYNRIEAIE---TFAADVSHELKNPLTSLRSAVETLPLAKTEASRARLLEVIEHDV 417

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIG-------LGDIEQVIEDFIAVDKRVQVS------- 103
                 +  +  A      +            L      + +   +   + V        
Sbjct: 418 RRLDRLISDISDASRLDAELQRQDEAQIDIRRLLTTLTSVANETKLGHDIGVDVRFEGNR 477

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             +           +++ NL   A +    GG+V I  +  K++    +  +G   R   
Sbjct: 478 ADSFSIPGHDSRLGQVISNLLTNAQSFSKSGGRVRIVCRRLKSDIEIVVDDDGPGIRPDA 537

Query: 163 KFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNVV 208
                     +           +       +   ++ R+  E                  
Sbjct: 538 LERVFERFYTDRPHQGFGQNSGLGLSISKQIIEAHRGRIWAENRPGPIDAHGDTRIAGAR 597

Query: 209 LSALLE 214
               L 
Sbjct: 598 FVVRLP 603


>gi|83311835|ref|YP_422099.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
 gi|82946676|dbj|BAE51540.1| Signal transduction histidine kinase [Magnetospirillum magneticum
           AMB-1]
          Length = 716

 Score =  107 bits (268), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 21/230 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLIRLS 56
            +  +   ++  A + S   HD+  P+  I++ L LL        +   E+        +
Sbjct: 489 ELKRSNEELENFAYVAS---HDLRQPLRMINSYLGLLRKRLAASFDQEAEEFFAFASDGA 545

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIE---QVIEDFIAVDKRVQVSWTGEKIDLSR 113
               ++ +  +  +     S   ++ L  +             D   ++S       +  
Sbjct: 546 RRLDLMIVDLLEFSRIGKQSTREMLDLNGVVADGMQNLAVAIRDCGAEISVAPGLPTIPG 605

Query: 114 ERAKILLNLFMVAHASLPRGGKVTIS-----VQDSKNENIFSLKINGNLARFPE---KFT 165
           +R+++      +   +L    +          +D   E I S++ NG           F 
Sbjct: 606 DRSELTRLFQNLIGNALKYCPEERKPVVDISCRDGGREWILSVRDNGIGIEAECLEKVFG 665

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                      +   I       +A  +  R+  E + DH       L K
Sbjct: 666 IFQRMVSRDKYEGTGIGLAVCRKIAEHHGGRIWVESVVDHGSTFHVALPK 715


>gi|330992263|ref|ZP_08316211.1| Alkaline phosphatase synthesis sensor protein phoR
           [Gluconacetobacter sp. SXCC-1]
 gi|329760462|gb|EGG76958.1| Alkaline phosphatase synthesis sensor protein phoR
           [Gluconacetobacter sp. SXCC-1]
          Length = 408

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 56/225 (24%), Gaps = 28/225 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             +   H++ +P+ A+   +E L      +     + + ++   +      +  +     
Sbjct: 178 FVAHASHELRTPLAALIGFIETLQGPAANDAVARQKFLAIMARQASRMQRLIDRLLYLSR 237

Query: 73  YTGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                                  D  Q           V  +  G     + +  ++L+N
Sbjct: 238 VQMLEHQRPQGQVVVAELLGRFRDELQGKPAGERAALVVHDAPPGSLRGDADQILQVLVN 297

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIF-----SLKINGNLARFP------EKFTQIVDG 170
           L   A             ++             S++ NG            E+F +I   
Sbjct: 298 LCENALRYGRPQAPAVARIEVGAQWLDTGGLLLSVRDNGPGIEPQHLPRLTERFYRITQP 357

Query: 171 -NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      +    V  +   +  RL    +       +  L 
Sbjct: 358 AGRNTGDQGTGLGLAIVRHIVDRHGGRLDITSVPGEGTRCTVWLP 402


>gi|327355100|gb|EGE83957.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ATCC 18188]
          Length = 2401

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 17/240 (7%), Positives = 61/240 (25%), Gaps = 29/240 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57
              N+     +    ++  + + HD+ +P+  +    ELL     +   +  V  +   + 
Sbjct: 1881 KHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTSLDREQDGYVESIRVCAD 1940

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSW 104
                +    +  +    G +       +                       ++    V  
Sbjct: 1941 TLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDP 2000

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                +       +I +NL   ++   P+G     +    ++         +   G     
Sbjct: 2001 NLLVMGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKVTDEDEGRIRITCKVADTGIGISG 2060

Query: 161  PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
             +   ++             +     +       +  +    ++  +  +     ++  L
Sbjct: 2061 EQLV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2119


>gi|312887983|ref|ZP_07747567.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
 gi|311299464|gb|EFQ76549.1| multi-sensor hybrid histidine kinase [Mucilaginibacter paludis DSM
           18603]
          Length = 733

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 62/237 (26%), Gaps = 27/237 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           +      ++ +     + + H+I +P+ +I     LL     + +  + I     +    
Sbjct: 228 SEKRLTEALQIKENFLANMSHEIRTPLNSILGFTNLLQRRDKDPDSAEFIESIQKAGENL 287

Query: 64  LKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGE 107
           +  +            +             +  IE + ++ +       +  V  +    
Sbjct: 288 MAIINDILDLSKIEAGMMRIVKAPFSVRGLIHSIETLFKERVNEKGLQLNCSVASNVPDT 347

Query: 108 KIDLSRERAKILLNLFMVAHAS----LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            I  +    +IL+NL   A       +       +    S  +    +K  G      EK
Sbjct: 348 LIGDATRLTQILVNLIGNALKFSDGGMIEVLVSRVWADGSNIQLGVKVKDTGIGI-SNEK 406

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +                 +    V  L       +    I       +  + 
Sbjct: 407 LDKIFERFNQAEDSITRNYGGTGLGLSIVKTLIELQGGNIEVHSIPGKGSEFAFYIP 463


>gi|311106215|ref|YP_003979068.1| His Kinase A phosphoacceptor domain-containing protein 7
           [Achromobacter xylosoxidans A8]
 gi|310760904|gb|ADP16353.1| His Kinase A phosphoacceptor domain protein 7 [Achromobacter
           xylosoxidans A8]
          Length = 479

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 68/236 (28%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSM-DLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLI-- 53
            +     L +M  L  L  + + I H++  P+ AI     + E L +   E   ++    
Sbjct: 240 RQQEQLRLGAMARLSTLGEMAAGIAHELNQPLTAILAQTRAAERLLDDDEERPAVRHALL 299

Query: 54  ------RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG- 106
                 + ++         ++ +            L    + + +     + +++SW   
Sbjct: 300 ASAEQAKRAADIISRMRALVQPSSPARRVALDPDALVASLRFLREAELARQGIRLSWHNA 359

Query: 107 ----EKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLAR 159
                 +       +IL NL   A  +L             +    + +FS+   G    
Sbjct: 360 SPGVRPLGDRVALEQILHNLVQNAADALTGVSGPRQISLEGRTDGEDYLFSVSDTGPGI- 418

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +   ++      +      +       LA     R+    +       +  L +
Sbjct: 419 AADALPRLFAPFYTTRPQGMGLGLALCETLAGSMDGRIAARNLSPAGACFTVSLPR 474


>gi|307313312|ref|ZP_07592936.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
 gi|306899325|gb|EFN29960.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti BL225C]
          Length = 420

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 63/202 (31%), Gaps = 8/202 (3%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L +   H++ SP+  +  +++L ++   +D   ++IR  S    +  + +  +       
Sbjct: 213 LLANASHELRSPLARLRMAIDLYEQAPNDDRKQEIIRNLSELDTLIEEILLASRLDHVEK 272

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
              +   D+  ++ +  A +              +R   +++ NL   A           
Sbjct: 273 LDALESVDLLALVSEEGARNDVEVFGMPAIVACDARLLRRLVRNLLQNALHHGGPPVTAA 332

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHE 192
           ++  D        ++ +G      E+  ++ +                +    V  +A  
Sbjct: 333 VAQADDAAILR--VRDHGPGIADSERH-RVFEPFYRPSGRSEAAGGWGLGLALVRQIAER 389

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           +   +  E   D        L 
Sbjct: 390 HGGAVSYESPPDGGACFVVTLP 411


>gi|298505397|gb|ADI84120.1| sensor histidine kinase response regulator, PAS and PAS
           domain-containing [Geobacter sulfurreducens KN400]
          Length = 772

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 66/238 (27%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       + S        + + H+I +P+  +  +LELL E  ++    +   ++  SA
Sbjct: 279 LRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDLDPRQREYAEIARESA 338

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSW 104
              L  + +   Y+      + L  +   I + +                     V    
Sbjct: 339 ESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAARKGVMVAADVPPHV 398

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
               +      ++I+ NL   A     +G         +V D + +   S+   G     
Sbjct: 399 PETVVGDPVRFSQIVANLVGNAVKFTEQGAITVQLGAAAVDDCRIDVSCSVGDTGAGI-S 457

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           PEKF  I D                 +    V  L       +            S  
Sbjct: 458 PEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISVASEPGMGSTFSFR 515


>gi|255514120|gb|EET90383.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 745

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 63/242 (26%), Gaps = 30/242 (12%)

Query: 3   KNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRL 55
           + +   +   +    L +   S I H++ +P+  I    +LL +     I +E  + ++ 
Sbjct: 491 RALDTRIKRSESVGQLKSQFISDIAHELKTPLTNIMGFTKLLYDGEFGEIPEEQKEYLKT 550

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +   +  +             + L   E  + +         +  +     L+ + 
Sbjct: 551 ILDESDRLMFIIMQVLDAAKLDARRVKLDLTEISMTELYNNPSIRALEESATNKGLAFDW 610

Query: 116 A----------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                            ++  NL   A     +GG      + S+N     +   G    
Sbjct: 611 IVSYDTPIVQADLSRIIQVFTNLIGNAIKFTEKGGIKVNIYKKSRNTIACEVIDTGIGIG 670

Query: 160 FPEKFTQIVDGNVESTID-------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             +K          S  +          +       +   +  ++  E            
Sbjct: 671 EEDKRKIFRKFYQASKKNLTIQNGAGTGLGLAITKEIVSLHHGKIKFESELGKGSKFWFT 730

Query: 213 LE 214
           + 
Sbjct: 731 IP 732


>gi|261200755|ref|XP_002626778.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239593850|gb|EEQ76431.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            SLH14081]
 gi|239607275|gb|EEQ84262.1| sensor histidine kinase/response regulator [Ajellomyces dermatitidis
            ER-3]
          Length = 2346

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 17/240 (7%), Positives = 61/240 (25%), Gaps = 29/240 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57
              N+     +    ++  + + HD+ +P+  +    ELL     +   +  V  +   + 
Sbjct: 1826 KHNVKLKEDAAKAKSIFLANVSHDLRTPMNGVIGLSELLKKTSLDREQDGYVESIRVCAD 1885

Query: 58   MSAIIRLKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSW 104
                +    +  +    G +       +                       ++    V  
Sbjct: 1886 TLLTLINDILDFSKLEAGKMKVSTVPLNLRETIAEVVRALRYTHRDCGLKTIEDLDGVDP 1945

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                +       +I +NL   ++   P+G     +    ++         +   G     
Sbjct: 1946 NLLVMGDPVRLHQIFMNLLSNSYKFTPKGSVTVKAKVTDEDEGRIRITCKVADTGIGISG 2005

Query: 161  PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHE-NKIRLLPEIIDDHNVVLSALL 213
             +   ++             +     +       +  +    ++  +  +     ++  L
Sbjct: 2006 EQLV-RLFRPFSQADSSTARSYGGSGLGLSICKAIIEDVLGGKIWLQSEEGVGTTVTFTL 2064


>gi|215433461|gb|ACJ66696.1| sensor histidine kinase [Myxococcus fulvus HW-1]
          Length = 542

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/224 (9%), Positives = 59/224 (26%), Gaps = 13/224 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVMQLIR 54
           ++       ++++      + H++ +P+GAI N++ +L                + +   
Sbjct: 311 QDELVARERLEVLGEAAGVVAHEVRNPLGAILNAVAVLRREAHLGPTGQAAVGMLEEEAI 370

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---- 110
                    L  +R        V     +      +                        
Sbjct: 371 RLEDIVRDLLDVVRPLEPRPRPVQLGELVRRALGQMHGPPDAPTLRFSVDEAAGTPALEG 430

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
                   + +L   A  + P GGKV ++V+ +       ++  G      +   ++   
Sbjct: 431 DETLLQLAVTHLVRNAVQASPAGGKVRMTVEPADGGVRLVVEDEGPGIPDVD-PQRVFQP 489

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +  +   +    V  +   ++  +               L 
Sbjct: 490 FFLTRANGRGLGLAIVRRVVLAHEGSVRASSRPRGGARFELWLP 533


>gi|188578874|ref|YP_001915803.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523326|gb|ACD61271.1| two-component system sensor protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 727

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 68/245 (27%), Gaps = 33/245 (13%)

Query: 1   MAKNICFNLSSMDLVALLC-----SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           + + +     + +  A+L      + + H+I +P+  I   LEL+    +  +   +++ 
Sbjct: 51  LEQELLRAKQAAE-AAMLAKGEFLATMSHEIRTPLNGIIPMLELISSGQLSLDQRDMLQT 109

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVS 103
           ++ S++  L+ +     Y+    + + L                 +         R+ + 
Sbjct: 110 ATSSSLQLLRIVDDILDYSKLEANKLELEITTFNLRELLDGVVQLLQRTAEGRQLRLSLD 169

Query: 104 WTGEKI----DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIF----SLKING 155
                            ++L NL   A     RG       +  +          ++  G
Sbjct: 170 IEPSVRLLVRGDPIRLRQVLGNLIGNAIKFTERGSVDIQLRRLGETRAQHLLRFQVRDTG 229

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                P++ T++                   +       +      R+  E         
Sbjct: 230 IGI-APDQQTRLFRSFAQADASTTRLYGGTGLGLAICKRIIDLMGGRIGVESEPGRGSTF 288

Query: 210 SALLE 214
              + 
Sbjct: 289 WFEIP 293


>gi|169616908|ref|XP_001801869.1| hypothetical protein SNOG_11631 [Phaeosphaeria nodorum SN15]
 gi|160703288|gb|EAT81339.2| hypothetical protein SNOG_11631 [Phaeosphaeria nodorum SN15]
          Length = 1239

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 60/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 721 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 780

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   I                     V  
Sbjct: 781 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTIFNALKSLASRANERKLNLAYDVSY 840

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN-------IFSLKING 155
                 I  S    +I+LNL   A      G            +         F++   G
Sbjct: 841 KVPDYVIGDSFRLRQIILNLVGNAIKFTEHGEVKVAISMAQDQDCGADQYVFQFAVSDTG 900

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 901 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 960

Query: 211 AL 212
             
Sbjct: 961 FT 962


>gi|218530077|ref|YP_002420893.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
 gi|218522380|gb|ACK82965.1| multi-sensor hybrid histidine kinase [Methylobacterium
           chloromethanicum CM4]
          Length = 1125

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 67/245 (27%), Gaps = 37/245 (15%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMS- 59
                S+    +   + + H+I +P+  I    +LL +       +   ++LIR+S  S 
Sbjct: 582 EAERASAAK--SEFLAAMSHEIRTPLNGILGYADLLLDRRDHDPEDQRRLELIRVSGESL 639

Query: 60  ---AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA---------VDKRVQVSWTGE 107
                  L   ++  G          LG + +     +          V+ R+       
Sbjct: 640 LTVVNDVLDVSKIEAGQLELDPLPFALGKLIEDTVAIMRGTALKSALTVEARIDPDLPAS 699

Query: 108 KIDLSRERAKILLNLFMVAHASLP---------RGGKVTISVQDSKNENIFSLKINGNLA 158
            +  +    ++L NL   A    P           G V  +   +     F +   G   
Sbjct: 700 VVGDANRLRQVLFNLLNNAVKFTPAGSVVLTARYEGSVPGADGGTAEALRFEISDTGIGI 759

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV--LS 210
              ++  ++          +        +       L       +  E  +        +
Sbjct: 760 APSQRH-RLFKPFSQVDGSISRRFGGSGLGLAICHRLVTMMGGAIGVESREGAGSTFWFT 818

Query: 211 ALLEK 215
             L +
Sbjct: 819 LALPR 823


>gi|149174355|ref|ZP_01852982.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
 gi|148846900|gb|EDL61236.1| multi-sensor hybrid histidine kinase [Planctomyces maris DSM 8797]
          Length = 1102

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 56/246 (22%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVALLCS--------RICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K     L +  L A   S         + H++ +P+  +    ELL    +     + +
Sbjct: 431 RKETEQKLKAAKLTAEEASQTKSEFLANMSHELRTPLNGVIGMTELLQGTHLNQHQQEFV 490

Query: 54  RLSSMSAIIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVD----- 97
                S    L  +     ++              D    L D    +            
Sbjct: 491 DACRSSGESLLNLINDILDFSKIEAGKLDLDLHEFDLENVLMDTVSTLVWRTNEKNLELP 550

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLP----RGGKVTISVQDSKNENIFSLKI 153
             V           S    +IL+NL   A              T+S ++      FS+  
Sbjct: 551 CFVDPESRLTLKGDSYRLRQILVNLIGNAIKFTDSGEVVVRTRTVSRENGNIRIHFSVTD 610

Query: 154 NGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G      +        +              +       L      R+  E  D     
Sbjct: 611 TGIGISESKINRLFQSFSQVDASTTRNYGGTGLGLVISQNLVELMGGRIGIESQDGVGST 670

Query: 209 LSALLE 214
               + 
Sbjct: 671 FWFEIP 676


>gi|145300269|ref|YP_001143110.1| aerobic respiration control sensor protein ArcB [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142853041|gb|ABO91362.1| two-component system hybrid sensor histidine kinase/response
           regulator [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 770

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 54/219 (24%), Gaps = 24/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++    Q ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRMLMDTPLDPRQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRR 347

Query: 80  LIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + +                    Q  +  + +            +       ++L NL 
Sbjct: 348 RLEIAPTPIDLPAFLDELETLSRIQAEQKGLYLHFDRDGDMPQFVMADGTRLRQVLWNLV 407

Query: 124 MVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDGNVES---T 175
             A      GG     +  + +        F ++  G      ++               
Sbjct: 408 GNAVKFTDEGGVTVRCLSHAADVPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKH 467

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       L      +L  +         +A LE
Sbjct: 468 ATGTGIGLAVSRQLVQAMGGQLYVDSDPGEGSCFTAELE 506


>gi|126652888|ref|ZP_01725031.1| YvrG [Bacillus sp. B14905]
 gi|126590308|gb|EAZ84429.1| YvrG [Bacillus sp. B14905]
          Length = 547

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 63/220 (28%), Gaps = 12/220 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMS- 59
           +  N      S  L     + + HD+ +P+ +I+    +L     E    ++   +    
Sbjct: 322 LDSNERQIKQSEQLREEWITGLSHDLKTPLSSIYGYSTMLASEDYEWTKEEMRIFAQTMQ 381

Query: 60  -----AIIRLKFMRLAFGYTGS-VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                    ++ +   +      +     L  +   +  F      V+V           
Sbjct: 382 EKATYMDALIQDLTYTYQLKNKAIQLDKVLLPLTTWLTQFADEQVSVKVYGDVMLQADEL 441

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDG 170
              +I+ NL   A    P G KV +  Q +  E + ++  +G      E    F +   G
Sbjct: 442 LLKRIMDNLITNAKKYTPVGTKVMVEAQHTGKEVMLTIADHGPGIPQEELDNLFERYYRG 501

Query: 171 NVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
              +       +       L   +   +      D   V 
Sbjct: 502 TNTTDDTAGTGLGLAITKQLIDLHNGTISVRSDRD-GTVF 540


>gi|158520905|ref|YP_001528775.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158509731|gb|ABW66698.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 647

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 64/235 (27%), Gaps = 24/235 (10%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           ++      S    ++  L + + H+I +P+  +     +L    D        + +I  S
Sbjct: 406 ESQDKIFQSEKQASVGRLAAGVAHEINNPLTGVLTYTHMLLRRNDLADDVRSDLTVIVES 465

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI------- 109
           +      +K +      T        +  + +     I     ++               
Sbjct: 466 TERVRKIVKGLLDFSRQTRLDPEATEINRLIEATVKLIENQALIKGVAIHFHPGESLPAL 525

Query: 110 -DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-------NENIFSLKINGNLARFP 161
                +   +LLN+ + A  +      + I+   ++       N    ++   G     P
Sbjct: 526 VIDRSQMQSVLLNMIINALDASEPSDTIEIATAMARSAGAPGRNGVEITVADTGCGI-PP 584

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ D    +        +       +  E+   +  +            L 
Sbjct: 585 ENLDKLFDPFFSTKEVGKGTGLGLSVSFGIVKEHNGNIRVQSEVGVGSTFFIWLP 639


>gi|85858018|ref|YP_460220.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
 gi|85721109|gb|ABC76052.1| signal transduction histidine kinase [Syntrophus aciditrophicus SB]
          Length = 546

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 20/240 (8%), Positives = 66/240 (27%), Gaps = 28/240 (11%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRL 55
            +     + +  L +   + S I HD  + +  I  ++     +L       + +    +
Sbjct: 165 KRTEEELIKTEKLKSFEVMASGIAHDFNNMLSVILGNINFARMILKAEDQAAQKLTEAEI 224

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR-- 113
           +   A    + +            +  L  + +    F   +  +   +  E        
Sbjct: 225 ACGRAKELAQQLLSFARVDSLQKKVTLLPTLIRNAVRFALNNSSISSEYDFEDSLFPVEV 284

Query: 114 ---ERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIFSLKINGNLA 158
              +  + + N+ +    ++P                   S+  + +    +++  G   
Sbjct: 285 DEGQIMQAISNIVINGREAMPNGGVIRITAENVSHPTDQESLPAAGDYVKITIRDQGPGI 344

Query: 159 RFPEKFTQIVDGNVESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I D    +       +  +       + + ++  +  E  +    + S  L 
Sbjct: 345 -PEPVLGRIFDPYFTTKSLKNDQAMGMGLSMSYSIINNHEGHITVESSEGAGTIFSLFLP 403


>gi|39996387|ref|NP_952338.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
 gi|39983267|gb|AAR34661.1| sensory box sensor histidine kinase/response regulator [Geobacter
           sulfurreducens PCA]
          Length = 772

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 66/238 (27%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       + S        + + H+I +P+  +  +LELL E  ++    +   ++  SA
Sbjct: 279 LRAAHAAAVDSSRAKIDFLANMSHEIRTPMNGVIGTLELLRETDLDPRQREYAEIARESA 338

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK----------------RVQVSW 104
              L  + +   Y+      + L  +   I + +                     V    
Sbjct: 339 ESMLAVINMVLDYSKIESHQLVLEAVPFAIREAVERAVKPFRAVAARKGVMVAADVPPHV 398

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKINGNLARF 160
               +      ++I+ NL   A     +G         +V D + +   S+   G     
Sbjct: 399 PETVVGDPVRFSQIVANLVGNAVKFTEQGAITVQLGAAAVDDCRIDVSCSVGDTGAGI-S 457

Query: 161 PEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           PEKF  I D                 +    V  L       +            S  
Sbjct: 458 PEKFDTIFDPFVQADGSTTRIHGGTGLGLAIVRRLVEAMDGVISVASEPGMGSTFSFR 515


>gi|194438901|ref|ZP_03070986.1| phosphate regulon sensor protein PhoR [Escherichia coli 101-1]
 gi|253774615|ref|YP_003037446.1| phosphate regulon sensor protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160467|ref|YP_003043575.1| phosphate regulon sensor protein [Escherichia coli B str. REL606]
 gi|300930308|ref|ZP_07145720.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 187-1]
 gi|194422195|gb|EDX38197.1| phosphate regulon sensor protein PhoR [Escherichia coli 101-1]
 gi|242376178|emb|CAQ30869.1| PhoR sensory histidine kinase [Escherichia coli BL21(DE3)]
 gi|253325659|gb|ACT30261.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253972368|gb|ACT38039.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli B str. REL606]
 gi|253976577|gb|ACT42247.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli BL21(DE3)]
 gi|300461768|gb|EFK25261.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 187-1]
 gi|323963385|gb|EGB58947.1| phosphate regulon sensor kinase PhoR [Escherichia coli H489]
 gi|323972249|gb|EGB67459.1| phosphate regulon sensor kinase PhoR [Escherichia coli TA007]
          Length = 431

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 69/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE++DE  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTQLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+      +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWLRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|303258095|ref|ZP_07344103.1| nitrogen regulation protein NR(II) [Burkholderiales bacterium
           1_1_47]
 gi|330998691|ref|ZP_08322420.1| putative nitrogen regulation protein NR [Parasutterella
           excrementihominis YIT 11859]
 gi|302859114|gb|EFL82197.1| nitrogen regulation protein NR(II) [Burkholderiales bacterium
           1_1_47]
 gi|329576430|gb|EGG57942.1| putative nitrogen regulation protein NR [Parasutterella
           excrementihominis YIT 11859]
          Length = 355

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 61/238 (25%), Gaps = 27/238 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M +    N  S +   LL   + H+I +P+G I  + +LL+    + E  +   +    A
Sbjct: 118 MTRERHMNELSENTRRLL-RNLAHEIKNPLGGIRGAAQLLEGELHDPENKEFTEVIISEA 176

Query: 61  IIRLKFM------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                 +           +    +    L  +  +++       +V   +     ++  +
Sbjct: 177 DRLQHLVDKILAPYRQLYHPVPTNVHEILERVRLLVQSEFPEGLKVVRDYDISVPEMMAD 236

Query: 115 RAKILLNLFMVAHAS------------------LPRGGKVTISVQDSKNENIFSLKINGN 156
           R ++      +   +                        V +     +      +  NG 
Sbjct: 237 RGQLTQISLNLMRNAAEALSEQIAQGTACITLKTRVVHHVQVGQSFCRTALNIHVIDNGE 296

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                E    I    V        +    V     ++   +            S L  
Sbjct: 297 GI-PKELTDSIFYPLVSGKEQGSGLGLSLVQTFVEQHGGSISVSSEAGR-TDFSILFP 352


>gi|301025170|ref|ZP_07188743.1| histidine kinase KdpD [Escherichia coli MS 69-1]
 gi|300396170|gb|EFJ79708.1| histidine kinase KdpD [Escherichia coli MS 69-1]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I       +    +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGEKLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|296391824|ref|ZP_06881299.1| putative two-component sensor [Pseudomonas aeruginosa PAb1]
          Length = 733

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+           +   + + H+I +P+  I    ELL E  + +   Q +R  + +  
Sbjct: 248 AKDQAEAADRAK--SRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGE 305

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKI 109
             L  +     +    ++      ++             +         R+ +    +  
Sbjct: 306 GLLAILNEVLHFARLEEAPDVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 365

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKINGNLARFP 161
           D  R   + L  +      +  +  +        +             S+  +G      
Sbjct: 366 DGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARSVGSERLRLSVADDGIGI-PE 424

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L      R+  E            +E
Sbjct: 425 EMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIE 483


>gi|258591199|emb|CBE67496.1| sensory histidine kinase in two-component regulatory system wtih
           KdpE, regulation of potassium translocation [NC10
           bacterium 'Dutch sediment']
          Length = 900

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 65/210 (30%), Gaps = 20/210 (9%)

Query: 24  HDIISPIGAIHNSLE-------LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76
           HD+ +P+  I  +         +LD+   +D +  L+  +     +    + +    +G+
Sbjct: 679 HDLRTPLATITGAASSLLEGDKILDDQTQQDLLESLLEEAERLNRLVNNLLEMTRMESGT 738

Query: 77  VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---------IDLSRERAKILLNLFMVAH 127
           +        +E+V+   +    ++                         ++L+NL   A 
Sbjct: 739 LQVRKEWHVLEEVVGAALGRLTKLLCDRPVTTSLPADLPLVPIDDVLIEQVLINLLDNAI 798

Query: 128 ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVES---TIDSHDIQFY 184
              P GG + I+V+   +     +   G      ++  ++ +        T     +   
Sbjct: 799 KHTPDGGPLEITVRAHNSMVTVEVADRGPGLPPGDE-ERVFEKFYRGYGLTSRGTGLGLA 857

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +   +  R+  E      V     + 
Sbjct: 858 ICRGIVEAHGGRIRAENRPGGGVAFRFTIP 887


>gi|257439559|ref|ZP_05615314.1| putative sensor histidine kinase [Faecalibacterium prausnitzii
           A2-165]
 gi|257198006|gb|EEU96290.1| putative sensor histidine kinase [Faecalibacterium prausnitzii
           A2-165]
          Length = 307

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 59/217 (27%), Gaps = 20/217 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSS------MSAIIRLK 65
           L + + HD+ +P+ ++   LE ++      E   E   +   +                 
Sbjct: 90  LMTSLSHDVKTPLASLVGYLEAVENKIVIGEEKDEYIHVAHEKAHYMKSFVENLFEWVKL 149

Query: 66  FMRLAFGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                  +    D        + D   V+E      + V                ++L N
Sbjct: 150 DSGEQIFHFEKFDLNELSRNIIADWIPVLESNHFEYEFVIPETEYFIHIDVNAYTRVLNN 209

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTIDS 178
           LF                 +D   +    +  NG        P  F ++   +   +   
Sbjct: 210 LFQNIIIHSAGDKMALHICEDI-QQAKIIISDNGKGIAPDKLPHIFERMYQCDQSRSAKG 268

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           + +       L   +K  +  E   D   V + LL K
Sbjct: 269 NGLGLAIAKELISVHKGTITAENSSDKGTVFTILLPK 305


>gi|296120393|ref|YP_003628171.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
 gi|296012733|gb|ADG65972.1| PAS sensor protein [Planctomyces limnophilus DSM 3776]
          Length = 1561

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 64/243 (26%), Gaps = 31/243 (12%)

Query: 2    AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQ 51
             K       S  + A+      I HD  + +  I+   ELL +              +  
Sbjct: 1177 RKLEEQLRQSQKMEAVGQFAGGIAHDFNNLLTVINCYCELLLDQKSQPQNWRESVQHIRD 1236

Query: 52   LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                ++      L F R +      +     +   ++++   I    ++ +        +
Sbjct: 1237 EGLRAAQLTKQLLDFSRRSHFQPRVIHLNDVIEGSQKLLRRLIGERIQLILHLDPLLPAI 1296

Query: 112  SRER---AKILLNLFMVAHASLP---------------RGGKVTISVQDSKNENIFSLKI 153
              +     ++L+NL + A  ++P                  +   ++          +  
Sbjct: 1297 KADTTHLDQVLMNLVVNARDAMPAGGRLTIRTSRLSPQDARQFLTNISLETPYVQLEVAD 1356

Query: 154  NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
             G      +   +I +    +        +    V  +  ++  ++              
Sbjct: 1357 TGIGM-SADVQARIFEPFFTTKEIGSGSGLGLAVVHGIMQQHDGQIHVTTEPGVGTTFRL 1415

Query: 212  LLE 214
            L  
Sbjct: 1416 LFP 1418


>gi|229097972|ref|ZP_04228922.1| hypothetical protein bcere0020_32080 [Bacillus cereus Rock3-29]
 gi|228685409|gb|EEL39337.1| hypothetical protein bcere0020_32080 [Bacillus cereus Rock3-29]
          Length = 417

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 12/223 (5%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSM 58
           K          +V+ L + I H+I +P+  +H   +LL+E       +D+ ++++ +   
Sbjct: 195 KEKLQRAEKFYIVSELAASIAHEIHNPLTTVHGFTQLLNEKHASKLSQDQYLEIMLIEMQ 254

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF-------IAVDKRVQVSWTGEKIDL 111
                +           ++   I +  I   +++          VD +   + +      
Sbjct: 255 QIQSTINNYLSLTKPKNTLKEKIDINYILNQVKETISPLALSYKVDIKQNSTDSFYINGD 314

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
             +    L N+      ++  GG + I++Q  K   I  +  +G      +   +I    
Sbjct: 315 PEKFRLCLNNIIQNGIEAMKNGGVLQINIQKIKGNIIVDIIDSGVGMSSQQIK-RIALPF 373

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +T     +       +  E    +  E         S  + 
Sbjct: 374 YSTTEKGTGLGTMIAYSIIKELNGDIEIESELGKGTRFSISIP 416


>gi|229097689|ref|ZP_04228645.1| hypothetical protein bcere0020_29290 [Bacillus cereus Rock3-29]
 gi|229114546|ref|ZP_04243961.1| hypothetical protein bcere0017_8440 [Bacillus cereus Rock1-3]
 gi|228668896|gb|EEL24323.1| hypothetical protein bcere0017_8440 [Bacillus cereus Rock1-3]
 gi|228685727|gb|EEL39649.1| hypothetical protein bcere0020_29290 [Bacillus cereus Rock3-29]
          Length = 450

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 63/236 (26%), Gaps = 25/236 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +  +  S        S   H++ +P   I +  E         + M+      +  
Sbjct: 213 MFERLEKSFESEK---QFTSDASHELRTPTSVIISQCEYALSQRNNPKEMEESLEVILRQ 269

Query: 61  IIRL----------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
             ++                K     F      +    + +   ++    ++D    +  
Sbjct: 270 SRKMSSLISQLLLLARVDQGKHDTFQFECINMSELTEIVVEELSLMVQEASIDITTNIEE 329

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP--- 161
                       ++L+NL   A A     G V I +       I  +  NG         
Sbjct: 330 DLFIKADQTLMMRLLMNLLTNAIAYGKENGSVNIQLCRDGTNIIGKVSDNGIGISEQHIT 389

Query: 162 ---EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E+F ++      S + +  +    V  +   +   +  E         +  L 
Sbjct: 390 KIWERFYRVDAARTSSNMGNTGLGLSMVKWIVELHGGEITVESKLGEGSTFTFKLP 445


>gi|298530441|ref|ZP_07017843.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509815|gb|EFI33719.1| multi-sensor signal transduction histidine kinase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 672

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 68/242 (28%), Gaps = 31/242 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHN---SLELLDEVGIEDEVMQLIRL 55
           M +     + +  +  L  L + + H++  P+ AI      ++++ + G +    QL ++
Sbjct: 416 MLEKDAQLIQASKMSDLGQLSAGVAHELNQPLNAIKMGSEFVQMMQQEGQDIPEEQLRQI 475

Query: 56  ------SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104
                     A   +  +R     +        L    Q +   I    ++         
Sbjct: 476 LGEINTQVDRATEIINNLREFGRKSDPGLEETDLNLCVQNVLTIIGQQIKLANIDLDFQP 535

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQ---------DSKNENIFSLK 152
                  +       +++ NL   A  ++ +                   S  + + S++
Sbjct: 536 ASQPVFIMAHKNRLEQVIFNLVTNARDAVMQKQAQQEPGWTGRIVIFTGISNGQAVLSVQ 595

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
            NG          +I D    +        +       +  + +  +  +  ++      
Sbjct: 596 DNGTGMPRS-VVDKIFDPFFTTKEVGKGMGLGLSICYGIIQDYQGEIDIQSRENEGTTFR 654

Query: 211 AL 212
             
Sbjct: 655 VF 656


>gi|254503178|ref|ZP_05115329.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
 gi|222439249|gb|EEE45928.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Labrenzia alexandrii DFL-11]
          Length = 607

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 71/248 (28%), Gaps = 38/248 (15%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   + +++      + + H++ +P+ ++ +++E L         + +M++I+   
Sbjct: 359 MTNALYDKIDAIE---RFAADVAHELKNPLTSLRSAVETLPLARNEDSRNRLMEVIQHDV 415

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------- 102
                 +  +          A   + ++D    L ++     +                 
Sbjct: 416 RRLDRLISDISDASRLDAELARTQSETIDIAELLWNMADAANERSDKGDPRVKLTVADAP 475

Query: 103 -SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                E         +++ NL   A +  P+ G V + +     E   ++  +G      
Sbjct: 476 GIKPYEVQGHDIRLGQVISNLLDNARSFSPKKGTVRVDLGRDGREIKITVDDDGPGI-RA 534

Query: 162 EKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEII-----DDH----N 206
           E   +I +       D         +       +   +   +          D       
Sbjct: 535 ENTERIFERFYTDRPDGEGFGNNSGLGLSISRQIIDAHGGSISATNRIEAGKDGKDRIAG 594

Query: 207 VVLSALLE 214
              + +L 
Sbjct: 595 ARFTIILP 602


>gi|254487059|ref|ZP_05100264.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
 gi|214043928|gb|EEB84566.1| multi-sensor hybrid histidine kinase [Roseobacter sp. GAI101]
          Length = 1047

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 64/230 (27%), Gaps = 25/230 (10%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIRL 64
            L  +   +   S + H++ +P+ +I  +L L+D      + +  M+LI ++  +A    
Sbjct: 682 KLDQIK--SEFVSTVSHELRTPLTSIKGALGLIDVSARDKLPETTMRLIEIARTNADRLT 739

Query: 65  KFMRLA-----------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKI 109
             +                    V+    +    Q +  F    +   V           
Sbjct: 740 NIVNDILDLEKISSGEVDFDLMPVNIGEIVEAAVQEMMPFAQTHENKLVCELPEQPVFAT 799

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV- 168
                  ++L NL   A        +V I ++  ++  I  ++  G       +      
Sbjct: 800 ADRGRTMQVLANLISNACKYSSDHTEVCIKIEQLEDIAIVYVQNRGPGVPESFRNRIFQA 859

Query: 169 ----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               DG+         +       +       +  E I     V      
Sbjct: 860 FSQADGSDTRAKGGTGLGLNITRQIVRRQGGEIGFESIPGGLTVFWFTCP 909


>gi|153813097|ref|ZP_01965765.1| hypothetical protein RUMOBE_03505 [Ruminococcus obeum ATCC 29174]
 gi|149830752|gb|EDM85842.1| hypothetical protein RUMOBE_03505 [Ruminococcus obeum ATCC 29174]
          Length = 419

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 22/234 (9%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQL 52
           M K     +  +  VA    LL   + H++ +P+ +I    + L     +   +D  ++ 
Sbjct: 185 MMKRTVERMEKLQEVAEKQELLMGALSHEMRTPLTSIIGYSDTLRHVKLKDEQKDRALEH 244

Query: 53  IRLSSMSAIIRLKF------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           I                   +         + +   L +    +E   A  K VQ+    
Sbjct: 245 INREGKRLEALSGKMLQLLGLYQNHAIQMEMTTADDLLNHVIDMEKEQAEKKNVQLKMEY 304

Query: 107 EKIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
           E   +  +      +L+NL   A  +   GG + +   ++  + IF +  +G      E 
Sbjct: 305 EAFSMKMDPALMESLLVNLIDNALKATDTGGSILVKAYETSGKKIFEVSDSGMGIPEEEL 364

Query: 164 F-----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                   +VD +         +     + +A  +   L  E        + A+
Sbjct: 365 GKITDAFYMVDKSRSRKEGGSGLGLALCVKVAEIHGGFLKIESQPGEGTTVRAV 418


>gi|85680304|gb|ABC72334.1| hypothetical protein [uncultured haloarchaeon]
          Length = 415

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 20/219 (9%), Positives = 55/219 (25%), Gaps = 10/219 (4%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                    +  L     S + HD+ +P+     +LELL E    D   ++    +    
Sbjct: 188 EDRRELQRQNEQL-DEFASVVSHDLRNPLSVAKGNLELLREDCDNDRTRKIALALTRMDE 246

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV--DKRVQVSWTGEKIDLSRERAKIL 119
           +    ++LA       +                    +  + ++            A++ 
Sbjct: 247 LIDDLLQLARIGEQVKNPESVNLAELSQSCWQNVETTNATIHLNIDATVQADRGRLAQVF 306

Query: 120 LNLFMVAHASLPRGGKVTISVQDS------KNENIFSLKINGNLARFPEKFTQIVDGNVE 173
            NL   A     +      +  +       +  +   +  + +     E+   + +    
Sbjct: 307 ENLMRNAIEHADQDQGKNETEDEDVTITIGELADGLYVADDRSGIPVDER-DDVFEAGYT 365

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +T          V  +   +   +      +        
Sbjct: 366 TTEQGTGFGLSIVKQIIEAHGWEISLTGSPEDGARFEVT 404


>gi|154246369|ref|YP_001417327.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
 gi|154160454|gb|ABS67670.1| integral membrane sensor signal transduction histidine kinase
           [Xanthobacter autotrophicus Py2]
          Length = 945

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 68/248 (27%), Gaps = 35/248 (14%)

Query: 2   AKNICFNLSSMDLVAL-------------LCSRICHDIISPIGAIHNSLELLDE-----V 43
            K+    ++S +L A                S + H++ +P+ AI    EL+ +      
Sbjct: 664 EKSRSLEIASAELSAANAQLRTLDELKDDFVSSVTHELRTPLTAIRALSELMLDAPDMEE 723

Query: 44  GIEDEVMQLIRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIED-FI 94
               E + +I   S      +                +   VD    + D      +   
Sbjct: 724 AQRQEFLAIIVGESERLGRLVNQVLDMAKLESGHGEWHNADVDLRRLVRDAVTATTELAR 783

Query: 95  AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG----KVTISVQDSKNENIFS 150
           +    +          L  +  ++   +  +   ++        +V +S+    +  +  
Sbjct: 784 SRGAEIVFEAPETVPLLRADPDRLTQVVLNLISNAVKFVPAEGGRVHVSLHVEGDGLVVR 843

Query: 151 LKINGNLARFPE---KFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
           +K NG      E    F +   G    +      +       +      R+  E  D   
Sbjct: 844 VKDNGPGVPEAERDTIFEKFRQGGDALTRPPGTGLGLPISRRIVDHFGGRMWLENQDGSG 903

Query: 207 VVLSALLE 214
              +  L 
Sbjct: 904 ACFAFRLP 911


>gi|328948156|ref|YP_004365493.1| PAS/PAC sensor signal transduction histidine kinase [Treponema
           succinifaciens DSM 2489]
 gi|328448480|gb|AEB14196.1| PAS/PAC sensor signal transduction histidine kinase [Treponema
           succinifaciens DSM 2489]
          Length = 395

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 27/233 (11%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----------GIEDEVMQLIRLS 56
            + S+  +  L + + H+I +P+GAI   ++LL +              E  + + + + 
Sbjct: 153 RMESLKSLTNLAASVAHEIKNPLGAISIHIQLLQKSIKKCREGDGQLPDEKFMEKYLSVV 212

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEK 108
           +       K +         +   + L +            + +F      V V+  G +
Sbjct: 213 NEEIENLNKIVMDFLFAVRPLKVNMTLSEPDSIIEKSINFFMPEFENCGIEVSVNLQGNR 272

Query: 109 IDLSRERAKILLNLFMVAHASL-------PRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             L  +          +   +           GK+ I+     +  I ++  NG      
Sbjct: 273 NRLLIDEKLFREIFINIVQNAKAAILSSKKSNGKLAINSFIKNDHYILTIADNGCGM-DE 331

Query: 162 EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++I +    +  D   +    V  +  E +  +      D   V +  + 
Sbjct: 332 ATCSRIFEPYYTTKADGTGLGLTTVYKIVKEFRGEITVNSELDEGTVFTVQIP 384


>gi|327479013|gb|AEA82323.1| nitrogen regulation protein NtrB [Pseudomonas stutzeri DSM 4166]
          Length = 360

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 66/234 (28%), Gaps = 25/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                LS  +   +L   + H+I +P+G I  + +LL     E+ +     +    A   
Sbjct: 121 KEEAQLSKQETTKMLVRGLAHEIKNPLGGIRGAAQLLARELPEEHLKDYTEVIIEEADRL 180

Query: 64  LKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +    G          +    L  +  +I+        +   +     ++  +R ++
Sbjct: 181 RNLVDRMLGSNKLPSLAMTNIHEVLEHVASLIDAECQGSIILVRDYDPSIPEVLMDREQM 240

Query: 119 LLNLFMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +  +   ++                      + TI     +      +  NG     
Sbjct: 241 IQAVLNIMRNAMQALAGQNELGLGRLTLRTRTLRQFTIGHIRHRLVARIEIIDNGPGI-P 299

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V    D   +       +  +++  +  E    H  V S  L 
Sbjct: 300 AELQNTLFYPMVSGRPDGTGLGLAITQNIISQHQGLIECESHPGH-TVFSIFLP 352


>gi|323170810|gb|EFZ56460.1| sensor protein kdpD [Escherichia coli LT-68]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHLEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|312796927|ref|YP_004029849.1| sensor protein kdpD [Burkholderia rhizoxinica HKI 454]
 gi|312168702|emb|CBW75705.1| Sensor protein kdpD (EC 2.7.3.-) [Burkholderia rhizoxinica HKI 454]
          Length = 938

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 70/244 (28%), Gaps = 31/244 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---------VGIEDEVMQL 52
           A++   ++ S  L   L S I HD+ +P+ AI     +L E            E ++++ 
Sbjct: 659 AQDALVSMESERLRNSLLSAISHDLRTPLTAIVGFASMLAEQQSGGAPPRPQAERDLIEA 718

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           I   ++     +  +            L     + + +        R  ++       + 
Sbjct: 719 IHEEALRMTRLVTNLLDMARLQAGAVRLNRQWLMLEEMVGAALAACRRSLAAHPVHTRVP 778

Query: 113 RE----------RAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA 158
            E             +  NLF  A    P G  ++I     +         +++ +G   
Sbjct: 779 AELPLLRLDPVLMEHLFANLFENAAKYTPTGAPLSIDAGVVEDGARRYVKVAIEDSGPGL 838

Query: 159 ---RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH-----NVVLS 210
                   F +   G  ES      +       +   +  R+  E   D           
Sbjct: 839 PPGMQARVFDKFTRGEKESAKPGIGLGLAICRAIVDAHGGRIGAENRVDVQGRVLGARFW 898

Query: 211 ALLE 214
            +L 
Sbjct: 899 FMLP 902


>gi|312130024|ref|YP_003997364.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
 gi|311906570|gb|ADQ17011.1| multi-sensor hybrid histidine kinase [Leadbetterella byssophila DSM
           17132]
          Length = 1076

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 62/239 (25%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + K        + +     + + H+I +P+  I   +++L+E  ++    + +     S+
Sbjct: 554 LKKAKEEAEHLLKVKEQFLANMSHEIRTPMNGIIGMIDVLNETELDKSQREYVNTIRNSS 613

Query: 61  IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEK 108
              L  +                     D    L ++  +  +     +  ++  W  + 
Sbjct: 614 ETLLTILNDILDLSKLEAGQMNVEKKPFDLKEMLKNLVALFKQKAAETNNLLKFEWDPKV 673

Query: 109 IDL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLA-- 158
                       +IL NL   A      G  +     + +        F +   G     
Sbjct: 674 HPYIIGDRIRLLQILSNLTSNAIKFTQNGNVIIRIQWEGQDEKTQFLRFEVADTGIGISE 733

Query: 159 -RFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + FT     ++ +        +       L       +          V    L 
Sbjct: 734 ENQKKLFTSFQQLDISTKKAFGGTGLGLVISKQLVEIMGGEIGLTSKLGEGSVFWFTLP 792


>gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 1311

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 54/237 (22%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
            K     L+ +D       S I H+  +P+  +   +E  L + G      Q  R   + 
Sbjct: 340 EKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQDTGEPLPPRQRDRQLMVH 399

Query: 60  AIIRL-------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                          D      D+       +            
Sbjct: 400 RNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLASAFRSLMEKAGLSLQVDCP 459

Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         K++LNL   A      GG       ++      ++  +G      E
Sbjct: 460 WLAAPVYVDREMYEKVVLNLLSNAFKFTFVGGVRVSLRAEADRAV-LTVADSGTGIPEAE 518

Query: 163 ---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +     G    + +   I    +  L   +   L  E         +  L 
Sbjct: 519 LPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLSVESAVGQGSRFTVTLP 575



 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 67/243 (27%), Gaps = 30/243 (12%)

Query: 2    AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
             +        + L         + + H++ +P+ AI  +L +L+    +   +   R ++
Sbjct: 897  RRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALSMLERSEGDTAKLARHRETA 956

Query: 58   MSAI----IRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101
               +      +  +                +VD  + + +   V    I           
Sbjct: 957  RRQMGNLVRLVDDLLDVSRITRGKMELRKETVDLAVLVQNALAVTRPLIEARGHTLSVAL 1016

Query: 102  VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNL 157
            +    +    +    ++++NL   A      GG++++S+         + +  +K  G  
Sbjct: 1017 IPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSLSREGLNGTRQAVLRVKDTGRG 1076

Query: 158  ARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSA 211
                              +++ +     +    V  L   +                 + 
Sbjct: 1077 IPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTLVKRLVEMHGGHAEAFSQGPGQGSEFTV 1136

Query: 212  LLE 214
             L 
Sbjct: 1137 RLP 1139


>gi|308067783|ref|YP_003869388.1| signal transduction histidine kinase [Paenibacillus polymyxa E681]
 gi|305857062|gb|ADM68850.1| Signal transduction histidine kinase [Paenibacillus polymyxa E681]
          Length = 891

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK            +   S + H++ +P+  I     LL +  +++E    I + + S+ 
Sbjct: 631 AKESAERADRAK--SEFLSVMSHELRTPMNGIIGMAGLLADTELDEEQRSYIDIITSSSG 688

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGD----------------IEQVIEDFIAVDKRVQVSWT 105
             ++ +      +      + L                  + Q +E  I +   V     
Sbjct: 689 ALMQILNEILDLSKIEAGKMSLLHESFVLDNVVGSVADLFMMQAMEKGIELKWHVDQEMP 748

Query: 106 GEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLAR 159
           G  +       ++L+NL   A              +   S   ++    FS+   G    
Sbjct: 749 GMLVGDHVRIRQVLVNLVSNAIKFTERGRVNIFVERKAYSRHKNRCLIEFSVTDTGIGIP 808

Query: 160 FPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +             +        +       L       +  +  +         L
Sbjct: 809 ADRQHLLFQPFSQLHPALNRKYGGTGLGLSICKNLVKLMGGSIGVDSDEARGATFRFQL 867


>gi|301059989|ref|ZP_07200863.1| PAS domain S-box protein [delta proteobacterium NaphS2]
 gi|300445868|gb|EFK09759.1| PAS domain S-box protein [delta proteobacterium NaphS2]
          Length = 872

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/240 (10%), Positives = 61/240 (25%), Gaps = 30/240 (12%)

Query: 4   NICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVM 50
                L   +L           L S + H+I  P+ AI ++       L +      EV 
Sbjct: 627 EEKARLQWEELAHVTRIGIMGELTSSLAHEINQPLTAIQSNAAAARRFLSEREPDIVEVR 686

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQV 102
           Q++             +               + +I  +          D +  +  +  
Sbjct: 687 QILDDIISDNTRAGNIIMKIRALLKREQVPFDITEINDLIADVLSLLRADALLPELEITT 746

Query: 103 SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDS-----KNENIFSLKIN 154
            +T     +S +R ++   +        A++         ++              +   
Sbjct: 747 EFTKGLPHISADRIQLQQVIINLILNGAAAMKDLPSSRREIRIKTAVEENGNVKVLVIDF 806

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G      +   QI +    +  +   +       +   +   +      +   V S  L 
Sbjct: 807 GTGI-EEDAMRQIFEPFYTTKKEGLGMGLPISQTIIEAHGGSMEASNNPEGGTVFSFTLP 865


>gi|297538562|ref|YP_003674331.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp.
           301]
 gi|297257909|gb|ADI29754.1| integral membrane sensor hybrid histidine kinase [Methylotenera sp.
           301]
          Length = 1148

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 61/235 (25%), Gaps = 25/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMS 59
           +A+ +    +     +   + I H++ +P+ +I    +LLD +  I D  +Q IR+   S
Sbjct: 683 LARQVADQANQAK--SRYITGISHELRTPLNSILGYAQLLDNDTSIPDSRLQAIRVIRRS 740

Query: 60  AIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                    +           I      Q     I     V   
Sbjct: 741 GEHLLSLIEGTLDIARIEGGKLTFDIKPLRFPEFIKQIVSMFELQARNKGINFAYEVTSE 800

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +  ++IL+N+   A      GG V       +      ++  G   +  E 
Sbjct: 801 LPKMVRADQKRLSQILINILGNAVKFTQHGGVVFRVQYAREL-VQIEIEDTGPGIQTHEI 859

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            +               I    +      LL       +    +     +    L
Sbjct: 860 DSVFEPFARGSAAANDRIGGTGLGLTISKLLTQLMGGEISVNSVVGKGTIFKIKL 914


>gi|290510434|ref|ZP_06549804.1| two-component system, OmpR family, sensor histidine kinase KdpD
           [Klebsiella sp. 1_1_55]
 gi|289777150|gb|EFD85148.1| two-component system, OmpR family, sensor histidine kinase KdpD
           [Klebsiella sp. 1_1_55]
          Length = 895

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 65/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +          L   L + + HD+ +P+  +    E+L               +E+ Q 
Sbjct: 651 EEQARLTSERESLRNSLLAALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQANEIRQH 710

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKI 109
           +  ++      L   R+  G        + L ++       +      + +Q+       
Sbjct: 711 VLNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALRMLEPSLGGQHIQLDLPDPLQ 770

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEK 163
            +  +     ++L+NL   AH        + I  +    +    +  NG           
Sbjct: 771 LVHVDGPLFERVLINLLENAHKYAGARANIGIRAEADARQLSLEVWDNGPGIPAGQEQAI 830

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +   +      +        L 
Sbjct: 831 FDKFARGNKESAIPGVGLGLAICQAIVDVHGGTISASNRPEGGASFRVTLP 881


>gi|290510052|ref|ZP_06549422.1| phosphate regulon sensor protein phoR [Klebsiella sp. 1_1_55]
 gi|289776768|gb|EFD84766.1| phosphate regulon sensor protein phoR [Klebsiella sp. 1_1_55]
          Length = 431

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 67/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQVLEGATREKALHTMREQTQRMEGLVKQLLTLSRIEA 268

Query: 80  LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   +++    +                     V    + +    +    + NL   
Sbjct: 269 APALAMNDRIDVPMMLRVVEREAQTLSQEKQTLIFTVDEQLKVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G ++ +S Q +     FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPPGTEIRVSWQRTPQGARFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + +  RL  +         S LL 
Sbjct: 388 GLGLAIVKHAVNHHDSRLEIDSTVGKGTRFSFLLP 422


>gi|317130193|ref|YP_004096475.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
 gi|315475141|gb|ADU31744.1| integral membrane sensor signal transduction histidine kinase
           [Bacillus cellulosilyticus DSM 2522]
          Length = 468

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 57/216 (26%), Gaps = 19/216 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAIIRLKFMRLA--- 70
             + + HD+ SP+ +I   L  L +         +   +++  +   +  ++ +      
Sbjct: 247 FVANVSHDLRSPLTSIRGFLGALIDGTIPKEEHSKYFSIMKNETERLMNLVEDLLHMARL 306

Query: 71  --------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
                          + L  +    +       V+  +                ++ +NL
Sbjct: 307 EANQIDIKPNTYNLTEQLRLIIAKMEPSLSKRRVELELHCEEDVFVYADENRMDQVFINL 366

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES-TIDS 178
              A        K+ ++++   +    S+   G      +    + +    +        
Sbjct: 367 LQNALQFSHEDSKIEVNIEKESDVAKVSITDYGPGINEEDLKYIWERFYKKDKARSKKTG 426

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I    V  +   +   +  +            L+
Sbjct: 427 AGIGLSIVKHIIDLHGTTIDVKSDVKEGTTFICTLK 462


>gi|262042406|ref|ZP_06015567.1| phosphate regulon sensor protein PhoR [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259040238|gb|EEW41348.1| phosphate regulon sensor protein PhoR [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 431

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQVLEGATREKALHTMREQTQRMEGLVKQLLTLSRIEA 268

Query: 80  LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   +++    +                     V    + +    +    + NL   
Sbjct: 269 APALAMNDRIDVPMMLRVVEREAQTLSQEKQTLIFTVDEQLKVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G ++ +S Q +    +FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPPGTEIRVSWQRTPQGALFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + +  RL  +         S LL 
Sbjct: 388 GLGLAIVKHAVNHHDSRLEIDSTVGKGTRFSFLLP 422


>gi|221197443|ref|ZP_03570490.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
 gi|221204116|ref|ZP_03577134.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221176282|gb|EEE08711.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2]
 gi|221183997|gb|EEE16397.1| multi-sensor hybrid histidine kinase [Burkholderia multivorans
           CGD2M]
          Length = 1001

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 55/246 (22%), Gaps = 33/246 (13%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L    + A           + + H+I +P+ AI  +LEL+    +     + +
Sbjct: 499 RKQMEQKLHEARVAAESANKAKSTFLATMSHEIRTPLNAIVGNLELMARAPLAPTERRRL 558

Query: 54  RLSSMSAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV-----D 97
              + S+                            D    L DI        +       
Sbjct: 559 DTIASSSDALLRIIDDVLDLSKAESNQMTIERIPFDVRDVLDDIAAFYRPLASAKGLELT 618

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS----KNENIFSLKI 153
            RV        +       +I+ NL   A     RG     + +             +  
Sbjct: 619 CRVAPELADGYVGDPVRLRQIVSNLVDNAIKFTERGSVSIDARRVVRGAGGARVEIRVAD 678

Query: 154 NGNLARFPEKFTQIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
            G         T                    +       +A      L  +  +     
Sbjct: 679 TGIGIPADSVPTLFDVYIQADASIYRRFGGTGLGLPLCRRIAMLMHGDLTVDSREREGTT 738

Query: 209 LSALLE 214
           +   L 
Sbjct: 739 MCVTLP 744


>gi|213582822|ref|ZP_03364648.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 610

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 57/229 (24%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       + +  +   + + H+I +P+  I  +++LL +  +       ++  + S  
Sbjct: 131 RQARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMANYRDDLQAINDSGE 190

Query: 62  IRLKFMRLAFGYT-------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTG 106
             L  +     Y+                +    L     ++   + V            
Sbjct: 191 SLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 250

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 R   +I++NL   A     RG  V  +  D        ++  G      +    
Sbjct: 251 TLQGDPRRIRQIVINLLSNAAKFTDRGSIVLRTFCD-DQSWFIEVEDTGCGIPEAKLTAI 309

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +       LA      L               L 
Sbjct: 310 FKPFVQATGCRGGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 358


>gi|213161958|ref|ZP_03347668.1| hybrid sensory histidine kinase TorS [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 725

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/229 (10%), Positives = 57/229 (24%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       + +  +   + + H+I +P+  I  +++LL +  +       ++  + S  
Sbjct: 432 RQARAEAEKANEAKSTFLAAMSHEIRTPLYGILGTVQLLADKPLMANYRDDLQAINDSGE 491

Query: 62  IRLKFMRLAFGYT-------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV--SWTG 106
             L  +     Y+                +    L     ++   + V            
Sbjct: 492 SLLAILNDILDYSAIEVGGTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPS 551

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166
                 R   +I++NL   A     RG  V  +  D        ++  G      +    
Sbjct: 552 TLQGDPRRIRQIVINLLSNAAKFTDRGSIVLRTFCD-DQSWFIEVEDTGCGIPEAKLTAI 610

Query: 167 IVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +       +       LA      L               L 
Sbjct: 611 FKPFVQATGCRGGTGLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLP 659


>gi|206577924|ref|YP_002240145.1| phosphate regulon sensor kinase PhoR [Klebsiella pneumoniae 342]
 gi|206566982|gb|ACI08758.1| phosphate regulon sensor kinase PhoR [Klebsiella pneumoniae 342]
          Length = 431

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQVLEGATREKALHTMREQTQRMEGLVKQLLTLSRIEA 268

Query: 80  LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   +++    +                     V    + +    +    + NL   
Sbjct: 269 APALAMNDRIDVPMMLRVVEREAQTLSQEKQTLIFTVDEQLKVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G ++ +S Q +    +FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPPGTEIRVSWQRTPQGALFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + +  RL  +         S LL 
Sbjct: 388 GLGLAIVKHAVNHHDSRLEIDSTVGKGTRFSFLLP 422


>gi|307155247|ref|YP_003890631.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
 gi|306985475|gb|ADN17356.1| GAF sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
          Length = 762

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 73/242 (30%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQ 51
           +  +I    S+    +   S I H++++P+  +      L              + + ++
Sbjct: 372 LRSSIAVAQSAHLSKSEFLSNISHELLTPLTCVIGLAGTLLHWSGEQSSLSPEKQRKYIE 431

Query: 52  LIRLSSMSAIIRLKFMRLA-------FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            I+ +    +  +  +          +       SL  + +         A  K + +  
Sbjct: 432 SIQKNGKKLMDLINDILDYSSITSGDYQLNIHEFSLYSVVNSVLRDFASEAQKKSIDLIL 491

Query: 105 TGEKIDLSRERA-------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             +      +         +IL +L   A    P  GKVT+ +   K++  F ++  G  
Sbjct: 492 DFQVQKEENDFYADRERIKQILSHLISNAIKFTPDQGKVTLRIWREKSQVFFQVEDTGIG 551

Query: 158 ARFPEK---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
               +    F +        + T     +       L   ++  +  E   +   + +  
Sbjct: 552 ISQEQLPLLFEKFQQLEKARQRTHGGTGLGLALTKQLVELHRGTIEVESTPEQGSLFTVR 611

Query: 213 LE 214
           + 
Sbjct: 612 IP 613


>gi|168178302|ref|ZP_02612966.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
 gi|182670571|gb|EDT82545.1| sensor histidine kinase [Clostridium botulinum NCTC 2916]
          Length = 342

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 73/236 (30%), Gaps = 21/236 (8%)

Query: 1   MAKNICFNLSSM----DLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           MA +       +     L     S + H+  +PI AI     LL +  + DE  +     
Sbjct: 107 MAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHK 166

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
            + +  RL  +         +++   L   ++   D       +   +   K +++ +  
Sbjct: 167 ILISTKRLSSLSGNILQITELENQKILPLEQKYYLDEQIRQTILLFEYQWTKKNITLDIN 226

Query: 117 --------------KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                         ++  N+   A     + G + +++  +  E + ++K NG       
Sbjct: 227 LDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEV 286

Query: 161 -PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               F +   G+     D + +    V  +    +  +     +         L K
Sbjct: 287 KDRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIEISSHEGVGTDFIVKLPK 342


>gi|118443834|ref|YP_879287.1| sensor histidine kinase [Clostridium novyi NT]
 gi|118134290|gb|ABK61334.1| sensor histidine kinase [Clostridium novyi NT]
          Length = 706

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 72/231 (31%), Gaps = 19/231 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE----VMQLIRLSSM 58
           ++       +  +  + + I HDI + +  I  S+ELL +   +D+     +++I + + 
Sbjct: 332 RSKFIENEKLKNMGEMAAGIAHDINNILTPIIGSVELLKDRYEDDKVISKQLKVIEMCTY 391

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF---------------IAVDKRVQVS 103
                +  ++       S D +      E +++                 + ++    + 
Sbjct: 392 DVTNIISKLKKLTVSYNSDDVIDVFNVNEVILDAIALTKNKWLNESILDGVKINIFTNLD 451

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                     E  ++++N+   A  ++ + G++ IS  D     +  ++ NG       +
Sbjct: 452 SKERIQGNITEIREVIINIISNAVDAIKKDGQIRISTVDENGFVVMEIEDNGIGINEGIE 511

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                            +       +       +  +  ++        + 
Sbjct: 512 KRIFQPFFTTKGKKGSGLGLSIAHKIIQSIGGNISCKSAENKGTKFIIKMP 562


>gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1358

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 54/237 (22%), Gaps = 25/237 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSMS 59
            K     L+ +D       S I H+  +P+  +   +E  L + G      Q  R   + 
Sbjct: 387 EKQRAEALAKLDQAKTAFFSNISHEFRTPLTLMLGPVEEGLQDTGEPLPPRQRDRQLMVH 446

Query: 60  AIIRL-------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
                                          D      D+       +            
Sbjct: 447 RNGLRLLKLVNTLLDFSRIEAGRVKARYQPTDLSAFTADLASAFRSLMEKAGLSLQVDCP 506

Query: 107 E----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         K++LNL   A      GG       ++      ++  +G      E
Sbjct: 507 WLAAPVYVDREMYEKVVLNLLSNAFKFTFVGGVRVSLRAEADRAV-LTVADSGTGIPEAE 565

Query: 163 ---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +     G    + +   I    +  L   +   L  E         +  L 
Sbjct: 566 LPHVFERFHRVEGARGRSYEGSGIGLALIQELVRLHGGTLSVESAVGQGSRFTVTLP 622



 Score = 84.8 bits (208), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 23/243 (9%), Positives = 67/243 (27%), Gaps = 30/243 (12%)

Query: 2    AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
             +        + L         + + H++ +P+ AI  +L +L+    +   +   R ++
Sbjct: 944  RRRSEALAEQLKLADQRKDEFLAMLAHELRNPMAAISLALSMLERSEGDTAKLARHRETA 1003

Query: 58   MSAI----IRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----Q 101
               +      +  +                +VD  + + +   V    I           
Sbjct: 1004 RRQMGNLVRLVDDLLDVSRITRGKMELRKETVDLAVLVQNALAVTRPLIEARGHTLSVAL 1063

Query: 102  VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNL 157
            +    +    +    ++++NL   A      GG++++S+         + +  +K  G  
Sbjct: 1064 IPGPFQMTADATRLEQVVVNLLTNAAKYTEPGGRLSVSLSREGLNGTRQAVLRVKDTGRG 1123

Query: 158  ARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSA 211
                              +++ +     +    V  L   +                 + 
Sbjct: 1124 IPRDMLGRVFELFVQVAPSLDRSTGGLGLGLTLVKRLVEMHGGHAEAFSQGPGQGSEFTV 1183

Query: 212  LLE 214
             L 
Sbjct: 1184 RLP 1186


>gi|300932413|ref|ZP_07147675.1| histidine kinase KdpD [Escherichia coli MS 187-1]
 gi|300459856|gb|EFK23349.1| histidine kinase KdpD [Escherichia coli MS 187-1]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|300692696|ref|YP_003753691.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           PSI07]
 gi|299079756|emb|CBJ52432.1| sensor histidine kinase, transcriptional regulator of
           C4-dicarboxylate transport [Ralstonia solanacearum
           PSI07]
          Length = 665

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 64/241 (26%), Gaps = 27/241 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48
           +       + +  L AL  + + I H++  P+ A+    +    LL+             
Sbjct: 417 LRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRVLLERGQHGAAADNLRA 476

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           +  L             F   +      V   + L  +  +       V+  +       
Sbjct: 477 IADLTERMGKITAQLKLFAGRSRRKHVDVPVRVALDHVLALLRPRLAEVETALHWHLPEA 536

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSK--------NENIFSLKINGN 156
           +  +  +     ++L+NL   A  ++           D           +    ++ NG+
Sbjct: 537 ECVVRADELKLEQVLINLIGNALDAIAANDLPRPGHIDIDIGPADGAPTQLCIVVRDNGH 596

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +    + +    +        +       +A +    L    +       +  L 
Sbjct: 597 GI-PADAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSAANVPGGGAQFTLSLV 655

Query: 215 K 215
           +
Sbjct: 656 R 656


>gi|258592529|emb|CBE68838.1| Sensor protein (fragment) [NC10 bacterium 'Dutch sediment']
          Length = 683

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 59/238 (24%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + +    +  +  L +   + + H+I +P+  I    EL+ +  +  E  + + L   SA
Sbjct: 105 LEQARAQSEIAARLKSEFLANMSHEIRTPMNGIIGMTELVLDTHLSTEQREYLDLVKSSA 164

Query: 61  IIRLKFMRLAFGYTG----------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              L  +      +                  +          Q     + +   +    
Sbjct: 165 ESLLGLLNDILDCSKIEAGKLNLEAIPFSLGEILHATLRPLTLQAGRKDLTLTWEILPDV 224

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLAR 159
               +       +I++NL   A     RGG    +    +          S+   G    
Sbjct: 225 LDTLVGDPTRLRQIVVNLVSNAIKFTERGGIAVRAQAIVEADLRQCVLYCSVTDTGIGIP 284

Query: 160 FPEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             ++           G+         +       L      R+  E            
Sbjct: 285 PEKRHVIFDPFIQVDGSTTRQYGGTGLGLTITAHLVTMMGGRIWVESEPGLGSTFHFT 342


>gi|255008265|ref|ZP_05280391.1| truncated tetracycline resistance element regulator RteA
           [Bacteroides fragilis 3_1_12]
          Length = 781

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 300 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 359

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++          +    
Sbjct: 360 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDNERII 419

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 420 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 478

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 479 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 519


>gi|229029709|ref|ZP_04185782.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271]
 gi|228731597|gb|EEL82506.1| hypothetical protein bcere0028_17940 [Bacillus cereus AH1271]
          Length = 444

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 62/221 (28%), Gaps = 16/221 (7%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  +     + + H+I +P+  I    E L            + M +I   +   I  +
Sbjct: 223 QAEQMKNEFIASVSHEIRTPLTGIKGWSETLKTVDHLTEEEIKQGMGIISGETDRLIHLV 282

Query: 65  KFM--------RLAFGYTGSVDSLIGLGDIEQV--IEDFIAVDKRVQVSWTGEKIDLSRE 114
           + +             Y   V     L +              + ++     E +    +
Sbjct: 283 EELLDFSRLQSNHFNLYKQKVQLYDILEETIWQLTPNAEEKQMQFIKTIERIELMGDRNK 342

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK-FTQIVDGNVE 173
             ++ LN+   A     + GKV I    ++ + +  +K  G         + +     + 
Sbjct: 343 LKQVFLNIVQNAIKYSHKNGKVYIEATKNEGQAVIKVKDEGVGIAKEHLPYIEQSFYQIN 402

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +      +    V  +   +   L     +     +   L 
Sbjct: 403 NHATGAGLGLAIVKKMVELHGGTLSFISKEGIGTTILIKLP 443


>gi|254446207|ref|ZP_05059683.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
 gi|198260515|gb|EDY84823.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Verrucomicrobiae bacterium DG1235]
          Length = 664

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/245 (8%), Positives = 60/245 (24%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV---MQLIRLSS 57
           + + +    ++        +   H++ +P+  I   +E +            ++LI+ S+
Sbjct: 267 LQEAMETANAASKAKTEFLATTSHELRTPLNPIIGYVEKIQRAQPNGPHSNDLRLIKQSA 326

Query: 58  MSAIIRLKFMRLAFGYTG-----SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +  ++ +               D +      E V++      ++  +       +  
Sbjct: 327 EQLLRLIEDILDFSRIESGTLKLENDQIDVEELCESVVKLLSEQAEQKGLDLNYSFNENR 386

Query: 113 R-------------ERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKING 155
                            ++LLNL   A      G        +       + I  +   G
Sbjct: 387 ELGMPEKDISIDAGRLRQVLLNLTNNAIKFTNEGSVTIKCSLNHDPSEKADLIIEVIDTG 446

Query: 156 NLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +   ++                   +       +      RL            
Sbjct: 447 IGIDSQD-QDKLFKPFSQLDSSWTREYGGMGLGLAICQRIVKAMGGRLTCFSEIGRGSRF 505

Query: 210 SALLE 214
           SA + 
Sbjct: 506 SAQIP 510


>gi|188533372|ref|YP_001907169.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia tasmaniensis Et1/99]
 gi|188028414|emb|CAO96275.1| Sensor kinase protein (Capsular synthesis regulator component C)
           [Erwinia tasmaniensis Et1/99]
          Length = 951

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 69/240 (28%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++       +  +    +  + + H++ +P+  I  +L+LL    +      L+   
Sbjct: 454 MEQSLHEIAKEAEQASESKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGAESLVTAM 513

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + IA                    +
Sbjct: 514 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVVKKRLTLWCFI 573

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           +++ NL   A       G + + V    +   F ++ +G     
Sbjct: 574 NSDVPVLMEGDPMRLQQVISNLLNNAIKFT-HTGGIILQVYVKGDYLTFCVRDSGVGISA 632

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D  V+             +       L +     +  +   D        + 
Sbjct: 633 KELT-RLFDPFVQVGSGVQRNFQGTGLGLAICEKLMNMMDGDIEVDSEPDMGSQFVVRIP 691


>gi|209885218|ref|YP_002289075.1| nitrogen regulation protein NtrB [Oligotropha carboxidovorans OM5]
 gi|209873414|gb|ACI93210.1| nitrogen regulation protein NtrB [Oligotropha carboxidovorans OM5]
          Length = 385

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 69/239 (28%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIR 54
           M + +    S+   V  L + + H+I +P+  I  + +LL+      +  +   + +   
Sbjct: 126 MDRQLTHR-SAARSVTALAAMLAHEIKNPLSGIRGAAQLLEQVATPEDRALTRLICEEAD 184

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID---L 111
                      F        G V+    L  ++++ +   A + R    +          
Sbjct: 185 RIVTLVDRMEVFGDERPVARGPVNIHSVLDHVKRLAQSGFARNVRFVEDYDPSLPPVLAN 244

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI----------------SVQDSKNENIFSLKING 155
             +  ++ LNL   A  ++       I                          F ++ NG
Sbjct: 245 RDQLVQVFLNLVKNAAEAVVTIDDPEIVLTTAFRPGVRLSVPGQATRVSLPLEFCVRDNG 304

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    + D  V +      +    V  +  ++   +  E       V   LL 
Sbjct: 305 PGV-PDDLLPNLFDPFVTTKPTGSGLGLALVAKIIGDHGGIIECESQPRK-TVFRVLLP 361


>gi|163739230|ref|ZP_02146642.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
 gi|161387630|gb|EDQ11987.1| periplasmic sensor hybrid histidine kinase [Phaeobacter
           gallaeciensis BS107]
          Length = 759

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 63/246 (25%), Gaps = 34/246 (13%)

Query: 2   AKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
                + L      A +         + + H+I +P+  +    EL+ E  ++++     
Sbjct: 219 RDEREYALEEARKAADIANRAKSEFLANMSHEIRTPMNGVIGMAELILETDLDEDQTMYA 278

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA----------------VD 97
              S S    L  +     ++      + L      ++  I                 V 
Sbjct: 279 ETISKSGSALLTIINDILNFSKIEAGKMELERAPFNLQTAIEDVVTLLSPKAAEKNVEVT 338

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKIN 154
            R   S             +IL N+   A           +V+    D +     S+   
Sbjct: 339 LRYDPSLPECYEGDVGRIRQILTNVAGNAVKFTGKGYVYIEVSGETDDDRTALRISVTDT 398

Query: 155 GNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G      ++  +I +             +   +       L      R+  +       V
Sbjct: 399 GAGI-PEDRLDRIFNAFEQADGAATRNYEGTGLGLAISTRLLELMGGRISVQSELGKGSV 457

Query: 209 LSALLE 214
            +  L 
Sbjct: 458 FAIDLP 463


>gi|149277932|ref|ZP_01884071.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
 gi|149231130|gb|EDM36510.1| two-component sensor histidine kinase [Pedobacter sp. BAL39]
          Length = 1147

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/227 (9%), Positives = 53/227 (23%), Gaps = 17/227 (7%)

Query: 4    NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE--VMQLIRLSSMSAI 61
            NI     +        S   H++ +P+  I    +L+           ++    +     
Sbjct: 778  NIELQKQNEQRKDEFLSIASHELKTPLTGIKAFNQLMKRHDPSRIGVYVEKSGENIQRLE 837

Query: 62   IRLKFMRLAF--------GYTGSVDSL-IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
              +  +                  D   +    +E V          ++     E     
Sbjct: 838  KLINDLLDVTKINAGKLTYDLKPFDFSGMLADSVESVQLTSSTHQIILEKPDQLEYNGDR 897

Query: 113  RERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
                +++ N    A    P   +V I+    +     S++  G   +      ++ D   
Sbjct: 898  LRLEQVVTNFLTNAVKYSPDANQVQINCWVEEGGVFVSVRDFGIGIQDQHI-QRLFDRYY 956

Query: 173  -----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +   +  +    +   +      E            L 
Sbjct: 957  RIDNTSMRFEGLGLGLFISAEILKRHMGTFWIESEPGEGSTFYFRLP 1003


>gi|108757070|ref|YP_635319.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
 gi|108460950|gb|ABF86135.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
            1622]
          Length = 1379

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 66/246 (26%), Gaps = 34/246 (13%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------------ 46
            + +     + +  L A+  L + + H+I +P+  I ++LE   E                
Sbjct: 828  LRQAQAQLVQTGRLAAVGQLAAGVGHEINNPLAYIVSNLEHASEEADALARELDGTRDVG 887

Query: 47   ----------DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
                       + +               F R      G V+    L    ++    +  
Sbjct: 888  ARLKDVNQALRDALLGADRVRRIVQDLKMFSRPDDEKQGPVELHAVLDSAVKIAMGELRP 947

Query: 97   DKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTI-----SVQDSKNENIF 149
              ++   +             A++ LNL + A  +LP G   T      + +      + 
Sbjct: 948  RAKLVRDYGDVPRVEGNEARLAQVFLNLLINAAQALPEGQAGTNEVRLVTRRGPDGRVVT 1007

Query: 150  SLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNV 207
             ++  G+     E   +I D    +        +               +  +       
Sbjct: 1008 EVRDTGSGISL-ELLGRIFDPFYTTKPVGVGTGLGLSLCHAYLTAMGGTIAVDSEAGRGS 1066

Query: 208  VLSALL 213
            V    L
Sbjct: 1067 VFRVTL 1072


>gi|73748154|ref|YP_307393.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
 gi|73659870|emb|CAI82477.1| sensor histidine kinase [Dehalococcoides sp. CBDB1]
          Length = 607

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/210 (10%), Positives = 64/210 (30%), Gaps = 19/210 (9%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKF--------------MRL 69
           H++ +P+  I  + + L     ++  + L +  +  A+   K               +++
Sbjct: 372 HELKTPLTPIMAASDTLSSGLKQEPWLNLAQNINKGALNLNKRIDELLDLARGEIGVLQI 431

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER-AKILLNLFMVAHA 128
                  ++    +            +    +       I+   +R  ++LLNL   A  
Sbjct: 432 KKIPIDCIELSSDIIQYVDAKVRKANLRLVFEHDDKTIFIEADPDRLRQVLLNLLSNAIK 491

Query: 129 SLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV----ESTIDSHDIQFY 184
             P  G + +    +  + +F +  +G      ++       +         D   +   
Sbjct: 492 YTPEPGLIKLRCFRTLTDVVFQIIDSGIGISSSDRAYLFEPYHRLERDRERFDGMGLGLA 551

Query: 185 YVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +  ++  E  ++H  + +  + 
Sbjct: 552 LSKRFVELHGGKIWVENANEHGSIFTFTIP 581


>gi|150392433|ref|YP_001322482.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
 gi|149952295|gb|ABR50823.1| multi-sensor signal transduction histidine kinase [Alkaliphilus
           metalliredigens QYMF]
          Length = 599

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/226 (9%), Positives = 68/226 (30%), Gaps = 24/226 (10%)

Query: 12  MDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRLSSMSAIIRLKF 66
            ++     + + H++ +P+  I +  E L E  +E++      + +I   +      ++ 
Sbjct: 367 ENMRKEFVANVSHELKTPLTTIKSYTETLLEGAMENQELGKQFLNVIDNEADRMARLVRD 426

Query: 67  M--------RLAFGYTGSVDSLIGLGDIE----QVIEDFIAVDKRVQVSWTGEKIDLSRE 114
           +        +        VD    +           ++         +            
Sbjct: 427 LLQLSNADYQQTKWDKKEVDLNYIVEKAVLNLSVSAKNKEQELNYKGLREGVSVWADENR 486

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
             ++LLN+   A      GG + +S+++++N     +  NG      +   +I +     
Sbjct: 487 IEQVLLNVISNAIKYTANGGCIDVSLEETQNHATIKITDNGMGIPKEDLP-RIFERFYRV 545

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    +       +   ++  +  +  +     +   L 
Sbjct: 546 DKARSREMGGTGLGLSIAKQIIDVHEGMIKVDSRESGGTAVLIELP 591


>gi|323359409|ref|YP_004225805.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
 gi|323275780|dbj|BAJ75925.1| signal transduction histidine kinase [Microbacterium testaceum
           StLB037]
          Length = 510

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/242 (9%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEV---------- 49
           ++     + +L+    +   H++ +P+ +I    EL    + +   ++            
Sbjct: 258 SLSARQRNEELMRRFVADASHELRTPLASIRGFSELSLRAMRQAHDDESRQRTAMAVETT 317

Query: 50  ---MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
              ++ I+  S+     ++ + L        + + G  D+ ++  + +   +        
Sbjct: 318 EQSLERIQAQSIRMTTLVEDLLLLARLDEGQELVYGTVDLTRLAVEAVGDARPAGPDHVW 377

Query: 107 EKIDLSR---------ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
           +                  +++ NL   A    P G +V +SV+   ++ +  +  +G  
Sbjct: 378 KIDVDDHPVELAGDAARLHQVVANLLANARTHTPAGSEVCVSVRREGDDAVLRVHDDGPG 437

Query: 158 ARFP---EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  + F +    +           +       +   ++  +               
Sbjct: 438 VDPAVAAQLFERFARADRSRDRKTGGTGLGLSIARAIVEAHRGSISVRSTPGD-TTFEVR 496

Query: 213 LE 214
           L 
Sbjct: 497 LP 498


>gi|309700661|emb|CBI99957.1| phosphate regulon two-component system, sensor kinase [Escherichia
           coli ETEC H10407]
          Length = 431

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE+++E  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|238893324|ref|YP_002918058.1| phosphate regulon sensor protein [Klebsiella pneumoniae NTUH-K2044]
 gi|330006878|ref|ZP_08305752.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. MS 92-3]
 gi|238545640|dbj|BAH61991.1| positive and negative sensor protein for pho regulon [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
 gi|328535684|gb|EGF62131.1| phosphate regulon sensor kinase PhoR [Klebsiella sp. MS 92-3]
          Length = 431

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 68/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQVLEGATREKALHTMREQTQRMEGLVKQLLTLSRIEA 268

Query: 80  LIGLGDIEQVIEDFIAV--------------DKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   +++    +                     V    + +    +    + NL   
Sbjct: 269 APALAMNDRIDVPMMLRVVEREAQTLSQEKQTLIFTVDEQLKVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G ++ +S Q +    +FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPPGTEIRVSWQRTPQGALFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + +  RL  +         S LL 
Sbjct: 388 GLGLAIVKHAVNHHDSRLEIDSTVGKGTRFSFLLP 422


>gi|225568376|ref|ZP_03777401.1| hypothetical protein CLOHYLEM_04453 [Clostridium hylemonae DSM
           15053]
 gi|225162824|gb|EEG75443.1| hypothetical protein CLOHYLEM_04453 [Clostridium hylemonae DSM
           15053]
          Length = 345

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 58/210 (27%), Gaps = 18/210 (8%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H + +P+ A+     ++ E   +   ++   + S   + R++ +         +D+
Sbjct: 128 SDISHQLKTPLAALSVYNGIMQEEAKDLPAVREFTVLSEQELDRIEILVQNLLKITKLDA 187

Query: 80  LIGLGDIEQVIEDFIA---------------VDKRVQVSWTGEKIDLSRERAKILLNLFM 124
              + +        +                 +  +    T           + L N+  
Sbjct: 188 GTIVIEKTDENMSEMMGSIERHFLYRAGQEGKNFCLCGDDTVMLSCDRSWMLEALSNIVK 247

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDI 181
            A     +G  V+I  +   +    ++K NG+     +    F +              +
Sbjct: 248 NAFDHTEQGDTVSIEWKQFASAVQITVKDNGSGIHPEDLYYIFKRFYRSRFSKDRQGLGL 307

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                  +   +   +  +         + 
Sbjct: 308 GLSLAKAVIEAHGGTIEVDSELGAGTTFTV 337


>gi|209695063|ref|YP_002262992.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
 gi|208009015|emb|CAQ79245.1| response regulator, histidine kinase [Aliivibrio salmonicida
           LFI1238]
          Length = 697

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 62/243 (25%), Gaps = 31/243 (12%)

Query: 2   AKNICFNLSSMDLVA--------LLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVM 50
            K     +      A           + + H+I +P+ AI   +++ +E      + E +
Sbjct: 311 RKKRLQQIQKAKQEAETANKAKSQFLAMMSHEIRTPLNAILGMVDVFNESLLSKEQYEWL 370

Query: 51  QLIRLSSMSAIIRL-------------KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD 97
             + +S+   +  +               +                   E+  +  I + 
Sbjct: 371 DQMEVSAQLLLAIISDVLDISRIEAGTFVLDEQPIDLLETIINSTNYFKEKSKDKGINLT 430

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNL 157
             V  S     I  +    +I+ NL   A     +G       Q   N    ++   G  
Sbjct: 431 VTVSHSVPNYVIADAARIMQIIFNLVGNAVKFTKKGSIWINITQTECNSTKIAITDTGIG 490

Query: 158 ARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
               +    +          +        +    +  L       +  + + +     + 
Sbjct: 491 I-SKDVLNNLFQPFVQADSSITRQFGGSGLGLSIIKRLTELMNGVISVKSVINEGSTFTV 549

Query: 212 LLE 214
            L 
Sbjct: 550 TLP 552


>gi|182626572|ref|ZP_02954319.1| sensor histidine kinase KdpD [Clostridium perfringens D str.
           JGS1721]
 gi|177908106|gb|EDT70676.1| sensor histidine kinase KdpD [Clostridium perfringens D str.
           JGS1721]
          Length = 900

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 19/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            K       +    A L   + HD+ +P+ +I  S  LL     DE       + +   S
Sbjct: 655 KKQALMQAENEKFKANLLRAVSHDLRTPLTSISGSASLLLNNNFDEETKRKLTLDIYDDS 714

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------E 107
                +    + ++    G+++       +E++I + +    R    +            
Sbjct: 715 IWLINLVENLLSVSRIDNGNINLNREAQLVEEIILEALQHVNRNACDYNIEIDLKDELLM 774

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                R   ++++N+   A     +G  + IS     +  I  +  NG      +K    
Sbjct: 775 VNADVRLIIQVIINIVDNAIKYTEKGSNIKISAFSKGDNVIIEIADNGVGISKEDKEHIF 834

Query: 168 VDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                             +       + + ++  +          ++   L++
Sbjct: 835 DMFFTSKKNISDSRRGLGLGLALCKSIINVHEGEIYVRDNKPRGTIIGFSLQR 887


>gi|168215940|ref|ZP_02641565.1| sensor histidine kinase KdpD [Clostridium perfringens NCTC 8239]
 gi|182381761|gb|EDT79240.1| sensor histidine kinase KdpD [Clostridium perfringens NCTC 8239]
          Length = 900

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 19/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            K       +    A L   + HD+ +P+ +I  S  LL     DE       + +   S
Sbjct: 655 KKQALMQAENEKFKANLLRAVSHDLRTPLTSISGSASLLLNNNFDEETKRKLTLDIYDDS 714

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------E 107
                +    + ++    G+++       +E++I + +    R    +            
Sbjct: 715 IWLINLVENLLSVSRIDNGNINLNREAQLVEEIILEALQHVNRNACDYNIEIDLKDELLM 774

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                R   ++++N+   A     +G  + IS     +  I  +  NG      +K    
Sbjct: 775 VNADVRLIIQVIINIVDNAIKYTEKGSNIKISAFSKGDNVIIEIADNGVGISKEDKEHIF 834

Query: 168 VDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                             +       + + ++  +          ++   L++
Sbjct: 835 DMFFTSKKNISDSRRGLGLGLALCKSIINVHEGEIYVRDNKPRGTIIGFSLQR 887


>gi|168213945|ref|ZP_02639570.1| sensor histidine kinase KdpD [Clostridium perfringens CPE str.
           F4969]
 gi|170714579|gb|EDT26761.1| sensor histidine kinase KdpD [Clostridium perfringens CPE str.
           F4969]
          Length = 900

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 19/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            K       +    A L   + HD+ +P+ +I  S  LL     DE       + +   S
Sbjct: 655 KKQALMQAENEKFKANLLRAVSHDLRTPLTSISGSASLLLNNNFDEETKRKLTLDIYDDS 714

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------E 107
                +    + ++    G+++       +E++I + +    R    +            
Sbjct: 715 IWLINLVENLLSVSRIDNGNINLNREAQLVEEIILEALQHVNRNACDYNIEIDLKDELLM 774

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                R   ++++N+   A     +G  + IS     +  I  +  NG      +K    
Sbjct: 775 VNADVRLIIQVIINIVDNAIKYTEKGSNIKISAFSKGDNVIIEIADNGVGISKEDKEHIF 834

Query: 168 VDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                             +       + + ++  +          ++   L++
Sbjct: 835 DMFFTSKKNISDSRRGLGLGLALCKSIINVHEGEIYVRDNKPRGTIIGFSLQR 887


>gi|220920472|ref|YP_002495773.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
 gi|219945078|gb|ACL55470.1| multi-sensor hybrid histidine kinase [Methylobacterium nodulans ORS
           2060]
          Length = 943

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 64/241 (26%), Gaps = 29/241 (12%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI------ 53
            +       S  L A+  L   + HD  + +  I +S++ L    + +E  +        
Sbjct: 555 RRAEEALRQSQKLEAVGQLTGGVAHDFNNLLTIIRSSVDFLRRPDLPEERRRRYLDAVSD 614

Query: 54  --RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
               ++      L F R        +D  + L  + ++++       RV          +
Sbjct: 615 TVDRAAKLTGQLLAFARRQALKLEVIDVGVRLQAVAEMLDAVTGARIRVVTQVPDRPCFV 674

Query: 112 SRERAKILLNLFM---VAHASL-------------PRGGKVTISVQDSKNENIFSLKING 155
             + ++    L      A  ++                  +             SL   G
Sbjct: 675 RTDLSQFETALVNIAVNARDAMNGEGTLTLRLACGCALPAIRGHAGAPGPFAAVSLTDTG 734

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P+   +I +    +        +    V   A ++   +  E         +  L
Sbjct: 735 AGI-PPDLIGRIFEPFFTTKEVGRGTGLGLSQVFGFAKQSGGDIAVESTPGQGTTFTLYL 793

Query: 214 E 214
            
Sbjct: 794 P 794


>gi|154253913|ref|YP_001414737.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
 gi|154157863|gb|ABS65080.1| integral membrane sensor signal transduction histidine kinase
           [Parvibaculum lavamentivorans DS-1]
          Length = 704

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 67/242 (27%), Gaps = 28/242 (11%)

Query: 2   AKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVM 50
           A  +   L + +  +L      + + H++ +P+ AI    E +          G   E  
Sbjct: 448 ADELTRALMAAEQASLAKSEFLATMSHELRTPLNAIIGFSETMKLEVFGPLGHGKYAEYA 507

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           + I  S    +  +  +          D+L       + +   +      Q         
Sbjct: 508 KDINNSGTHLLDLVSDILDISRVESGTDALNEEEVCIESVARAVLAATAAQAGKAEVVCR 567

Query: 111 LSRE------------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLA 158
           L  +              +IL NL   A      GG V +++   ++    ++   G   
Sbjct: 568 LDADAGLPPVFADERKIRQILTNLVGNAIKFNVPGGTVAVTLARDESGYRIAVADTGIGI 627

Query: 159 RFPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +    +              +   +    V +L  ++      E        ++  L
Sbjct: 628 VAEDIPKALARFGQLEDQFRRKYEGLGLGLPIVQVLTEQHGGHFAIESTPGRGTTVTITL 687

Query: 214 EK 215
            +
Sbjct: 688 PR 689


>gi|110799898|ref|YP_695659.1| sensor histidine kinase KdpD [Clostridium perfringens ATCC 13124]
 gi|168209563|ref|ZP_02635188.1| sensor histidine kinase KdpD [Clostridium perfringens B str. ATCC
           3626]
 gi|110674545|gb|ABG83532.1| sensor histidine kinase KdpD [Clostridium perfringens ATCC 13124]
 gi|170712345|gb|EDT24527.1| sensor histidine kinase KdpD [Clostridium perfringens B str. ATCC
           3626]
          Length = 900

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 19/233 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLS 56
            K       +    A L   + HD+ +P+ +I  S  LL     DE       + +   S
Sbjct: 655 KKQALMQAENEKFKANLLRAVSHDLRTPLTSISGSASLLLNNNFDEETKRKLTLDIYDDS 714

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---------E 107
                +    + ++    G+++       +E++I + +    R    +            
Sbjct: 715 IWLINLVENLLSVSRIDNGNINLNREAQLVEEIILEALQHVNRNACDYNIEIDLKDELLM 774

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                R   ++++N+   A     +G  + IS     +  I  +  NG      +K    
Sbjct: 775 VNADVRLIIQVIINIVDNAIKYTEKGSNIKISAFSKGDNVIIEIADNGVGISKEDKEHIF 834

Query: 168 VDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                             +       + + ++  +          ++   L++
Sbjct: 835 DMFFTSKKNISDSRRGLGLGLALCKSIINVHEGEIYVRDNKPRGTIIGFSLQR 887


>gi|119946606|ref|YP_944286.1| fused histidine kinase sensor/response regulator [Psychromonas
           ingrahamii 37]
 gi|119865210|gb|ABM04687.1| fused histidine kinase sensor and response regulator containing
           ATPase domain [Psychromonas ingrahamii 37]
          Length = 1121

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 58/235 (24%), Gaps = 27/235 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMSA 60
           AK +    +      L  + + H++ +P+  +    +LL  +  +  +  ++I +   + 
Sbjct: 660 AKEVAEAANEAKSRYL--AGLSHELRTPLNVLLGYAQLLSRDPALPFKQREIIGIVKRNG 717

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                 ++       ++   +      Q  +  +        + 
Sbjct: 718 EHLADLIEGLLEISKIEAGRVNLQRDEFNLKAILQQLVDMFQMQASKKRLKFYYLASPNL 777

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   +   +IL+NL   A     +G         S+    FS+   G         
Sbjct: 778 PDYVATDKQRLRQILINLISNAIKYTEQGSVTFKVTYRSEV-AHFSVIDTGPGISKS-NQ 835

Query: 165 TQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             I              I    +       LA      +            +  L
Sbjct: 836 ELIFKPFEQIRNDHTKAISGTGLGLTISRSLAELMGGEISLTSSIGQGSTFNFRL 890


>gi|48256736|gb|AAT41590.1| GacS [Pseudomonas fluorescens]
          Length = 917

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 63/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKSA 330

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++       +      V    
Sbjct: 331 DSLLGIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ + ++    +   S++  G     
Sbjct: 391 PLSLVGDPLRLKQILTNLVSNAIKFTREGTIVARAMLEDEHEDSVQLRISIQDTGIGLSN 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLVEQMGGEIGVDSTPGEGSEFWISLRL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|83815367|ref|YP_446672.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
 gi|83756761|gb|ABC44874.1| sensor histidine kinase with a PAS domain [Salinibacter ruber DSM
           13855]
          Length = 720

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 66/246 (26%), Gaps = 32/246 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI--EDEVMQLIRLSSM 58
           +         +  L + + + + H+I +P+ +I    E ++E     E         +  
Sbjct: 461 LRDAKEAAEEASRLKSTMLANMSHEIRTPLTSIIGFSETIEEEADLLEATPADANPSTLS 520

Query: 59  SAIIRLK----------------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV 96
                +                        M LA       +   GL D      +   V
Sbjct: 521 RFAHLIGKNGRRLLDTLDGVLNLSRLEAGQMDLAAERIPLDELAKGLVDELHPQAEEAGV 580

Query: 97  DKRVQVSWTGEKIDLSRERAKILLNL-FMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
              V+ +       + R   +I L      A      GG+V +    +++  +  ++  G
Sbjct: 581 HCEVEKTPRPVVARVDRGGMQIALRNLISNAIKYTEEGGRVRVRSYRAEDAAVVEVEDTG 640

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +    + +             +   +       +  +    +  +  +D    +
Sbjct: 641 IGM-DADTVEHVFEPFRQASEGLNREYEGTGLGLAVTKQVIEKMNGDIEVDTEEDAGTCV 699

Query: 210 SALLEK 215
              L +
Sbjct: 700 RLRLPR 705


>gi|82543128|ref|YP_407075.1| sensor protein KdpD [Shigella boydii Sb227]
 gi|81244539|gb|ABB65247.1| sensor for high-affinity potassium transport system [Shigella
           boydii Sb227]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|75911124|ref|YP_325420.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
 gi|75704849|gb|ABA24525.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
           29413]
          Length = 889

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 65/238 (27%), Gaps = 30/238 (12%)

Query: 2   AKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A++     + +    L  L      H++ +P+  I     LL +  +E+   +    +  
Sbjct: 500 ARSEAERANRLKDDFLAVL-----SHELRTPLNPILGWATLLKKRNLEEATRRRGIETIE 554

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT------------- 105
                   +         +       +I+ V       +    VS               
Sbjct: 555 RNAKLQIQLIEDLLDVSRIQQGKLNLNIQSVNLVNTIEEALETVSLAIEAKNIDVKTALN 614

Query: 106 ---GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                    +    +I+ NL   A    P  G++ ++++   N     ++ NG       
Sbjct: 615 VNVCMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVALERVNNSAQIQIQDNGKGISSEF 674

Query: 163 K-----FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                 + +  DG +        +    V  L   +   +  E   +      +  L 
Sbjct: 675 LPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGTVKAESAGEGMGATFTVNLP 732


>gi|16803986|ref|NP_465471.1| hypothetical protein lmo1947 [Listeria monocytogenes EGD-e]
 gi|224501253|ref|ZP_03669560.1| hypothetical protein LmonFR_01810 [Listeria monocytogenes FSL
           R2-561]
 gi|16411400|emb|CAD00025.1| resE [Listeria monocytogenes EGD-e]
          Length = 596

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 71/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 356 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 411

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M           ++          L  +     V+     V+  +++  
Sbjct: 412 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELET 471

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +     +R  ++L+NL M A     + G         ++  +++  + ++  NG+  
Sbjct: 472 PDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDVARSNLVITVSDNGSGI 531

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  E            
Sbjct: 532 AEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIIT 591

Query: 213 LE 214
           L 
Sbjct: 592 LP 593


>gi|16264748|ref|NP_437540.1| putative two component sensor histidine kinase protein
           [Sinorhizobium meliloti 1021]
 gi|307320755|ref|ZP_07600166.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
 gi|15140886|emb|CAC49400.1| putative two component sensor histidine kinase protein
           [Sinorhizobium meliloti 1021]
 gi|306893573|gb|EFN24348.1| integral membrane sensor signal transduction histidine kinase
           [Sinorhizobium meliloti AK83]
          Length = 420

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 63/202 (31%), Gaps = 8/202 (3%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV 77
           L +   H++ SP+  +  +++L ++   +D   ++IR  S    +  + +  +       
Sbjct: 213 LLANASHELRSPLARLRMAIDLYEQAPNDDRKQEIIRNLSELDTLIEEILLASRLDHVEK 272

Query: 78  DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVT 137
              +   D+  ++ +  A +              +R   +++ NL   A           
Sbjct: 273 LDALESVDLLALVSEEGARNDVEVFGMPAIVACDARLLRRLVRNLLQNALHHGGPPVTAA 332

Query: 138 ISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHE 192
           ++  D        ++ +G      E+  ++ +                +    V  +A  
Sbjct: 333 VAQADDAAILR--VRDHGPGIADSERH-RVFEPFYRPSGRSEAAGGWGLGLALVRQIAER 389

Query: 193 NKIRLLPEIIDDHNVVLSALLE 214
           +   +  E   D        L 
Sbjct: 390 HGGAVSYESPPDGGACFVVTLP 411


>gi|16128385|ref|NP_414934.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. MG1655]
 gi|89107270|ref|AP_001050.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. W3110]
 gi|170079986|ref|YP_001729306.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. DH10B]
 gi|238899688|ref|YP_002925484.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli BW2952]
 gi|256023983|ref|ZP_05437848.1| phosphate regulon sensor protein [Escherichia sp. 4_1_40B]
 gi|300918222|ref|ZP_07134828.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 115-1]
 gi|300947952|ref|ZP_07162098.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 116-1]
 gi|300957962|ref|ZP_07170128.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 175-1]
 gi|301025775|ref|ZP_07189287.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 196-1]
 gi|301647318|ref|ZP_07247132.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 146-1]
 gi|307137042|ref|ZP_07496398.1| phosphate regulon sensor protein [Escherichia coli H736]
 gi|331640914|ref|ZP_08342049.1| phosphate regulon sensor kinase PhoR [Escherichia coli H736]
 gi|130131|sp|P08400|PHOR_ECOLI RecName: Full=Phosphate regulon sensor protein phoR
 gi|581188|emb|CAA28409.1| unnamed protein product [Escherichia coli K-12]
 gi|1657596|gb|AAB18124.1| phosphate regulon sensor protein phoR [Escherichia coli str. K-12
           substr. MG1655]
 gi|1786600|gb|AAC73503.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. MG1655]
 gi|16209156|gb|AAL09903.1| PhoR+ [CRIM plasmid pAH152]
 gi|16209169|gb|AAL09907.1| PhoR[Ec] [CRIM plasmid pAH156]
 gi|85674540|dbj|BAE76180.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K12 substr. W3110]
 gi|169887821|gb|ACB01528.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli str. K-12 substr. DH10B]
 gi|213521172|gb|ACJ50527.1| PhoR [Escherichia coli]
 gi|238863533|gb|ACR65531.1| sensory histidine kinase in two-component regulatory system with
           PhoB [Escherichia coli BW2952]
 gi|260450413|gb|ACX40835.1| PAS/PAC sensor signal transduction histidine kinase [Escherichia
           coli DH1]
 gi|299879978|gb|EFI88189.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 196-1]
 gi|300315336|gb|EFJ65120.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 175-1]
 gi|300414607|gb|EFJ97917.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 115-1]
 gi|300452488|gb|EFK16108.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 116-1]
 gi|301074543|gb|EFK89349.1| phosphate regulon sensor kinase PhoR [Escherichia coli MS 146-1]
 gi|315135082|dbj|BAJ42241.1| phosphate regulon sensor protein [Escherichia coli DH1]
 gi|315616661|gb|EFU97278.1| phosphate regulon sensor kinase PhoR [Escherichia coli 3431]
 gi|323938584|gb|EGB34833.1| phosphate regulon sensor kinase PhoR [Escherichia coli E1520]
 gi|323943205|gb|EGB39361.1| phosphate regulon sensor kinase PhoR [Escherichia coli E482]
 gi|331037712|gb|EGI09932.1| phosphate regulon sensor kinase PhoR [Escherichia coli H736]
          Length = 431

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 70/215 (32%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIE--------DEVMQLIRLSSMSAIIRLKFMRLAF 71
           + + H++ +P+  +   LE+++E  +E          + +  +         L   ++  
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEA 268

Query: 72  GYTGSVDSLIGLGDIEQVIED------FIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
             T  ++  + +  + +V+E               ++    +      +    + NL   
Sbjct: 269 APTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+  Q   +   FS++ NG     PE   ++ +                
Sbjct: 329 AVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGI-APEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  E         S ++ 
Sbjct: 388 GLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIP 422


>gi|134300925|ref|YP_001114421.1| histidine kinase [Desulfotomaculum reducens MI-1]
 gi|134053625|gb|ABO51596.1| histidine kinase [Desulfotomaculum reducens MI-1]
          Length = 246

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 69/214 (32%), Gaps = 12/214 (5%)

Query: 6   CFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----------GIEDEVMQLIRL 55
             +L  + L   + + I H+I +P+  +   L++L +           GI  + +     
Sbjct: 28  NKHLEKIKLTGEIAAGIAHEIRNPMTTVRGLLQILLKEKECFSLEKNLGIMIKELDRAND 87

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
               +++               D +  L    +        +  +++    +++    + 
Sbjct: 88  IITESLLLASTKATGLKMKNLNDIIRILSPHIKSNASKSKNNVVIELGVIPDQLLNEEDM 147

Query: 116 AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
            K+++NL      ++  GG +TI         I S++  G     P+   ++      + 
Sbjct: 148 KKLIINLSQNGLEAMSSGGTLTIKTYTEDTNIILSVQDQGTGI-KPDILEKLGTPFFSTK 206

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
            D   +       +A  +   L  E       V 
Sbjct: 207 -DHSGLGLAICYSIAARHNAILQIETGPTGTTVF 239


>gi|15599742|ref|NP_253236.1| two-component sensor PilS [Pseudomonas aeruginosa PAO1]
 gi|116052692|ref|YP_793008.1| two-component sensor PilS [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254238706|ref|ZP_04932029.1| two-component sensor PilS [Pseudomonas aeruginosa C3719]
 gi|254244555|ref|ZP_04937877.1| two-component sensor PilS [Pseudomonas aeruginosa 2192]
 gi|313107192|ref|ZP_07793391.1| two-component sensor PilS [Pseudomonas aeruginosa 39016]
 gi|464393|sp|P33639|PILS_PSEAE RecName: Full=Sensor protein pilS
 gi|9950790|gb|AAG07934.1|AE004868_5 two-component sensor PilS [Pseudomonas aeruginosa PAO1]
 gi|581436|emb|CAA78138.1| sensor; putative PilR kinase [Pseudomonas aeruginosa PAO1]
 gi|32423744|gb|AAP81268.1| PilS [Pseudomonas aeruginosa PA14]
 gi|115587913|gb|ABJ13928.1| kinase sensor protein of two component regulatory [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126170637|gb|EAZ56148.1| two-component sensor PilS [Pseudomonas aeruginosa C3719]
 gi|126197933|gb|EAZ61996.1| two-component sensor PilS [Pseudomonas aeruginosa 2192]
 gi|310879893|gb|EFQ38487.1| two-component sensor PilS [Pseudomonas aeruginosa 39016]
          Length = 530

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 64/219 (29%), Gaps = 19/219 (8%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL---- 64
           M L  L  L + I H+I +P+GAI ++ +LL E   ++    +L ++    +        
Sbjct: 305 MKLAGLGRLTAGIAHEIRNPLGAISHAAQLLQESEELDAPDRRLTQIIQDQSKRMNLVIE 364

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSRERAKI 118
              +  R        +D    L          +  D ++ +       +      +  ++
Sbjct: 365 NVLQLSRRRQAEPQQLDLKEWLQRFVDEYPGRLRNDSQLHLQLGAGDIQTRMDPHQLNQV 424

Query: 119 LLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L NL         +                 +  +  +  +G      +    + +    
Sbjct: 425 LSNLVQNGLRYSAQAHGRGQVWLSLARDPESDLPVLEVIDDGPGVPADKLNN-LFEPFFT 483

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +      +  Y    L   N+ R+     ++        
Sbjct: 484 TESKGTGLGLYLSRELCESNQARIDYRNREEGGGCFRIT 522


>gi|311281667|ref|YP_003943898.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Enterobacter cloacae SCF1]
 gi|308750862|gb|ADO50614.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Enterobacter cloacae SCF1]
          Length = 349

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 65/238 (27%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCS-----RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           M      +   +     + +      + H+I +P+G +  + +LL +   +  +M+   +
Sbjct: 111 MDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPSLMEYTNV 170

Query: 56  SSMSAIIRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
               A      +         G   S         + +++   +  +  +   +     +
Sbjct: 171 IIEQADRLRNLVDRLLGPQHPGMHVSESIHKVAERVVKLVSMELPANVTLVRDYDPSLPE 230

Query: 111 LSRERAKILLNLFMVAHAS--------------LPRGGKVTISVQDSKNENIFSLKINGN 156
           L  +  +I   L  +   +                   ++T+     +      ++ NG 
Sbjct: 231 LPHDPDQIEQVLLNIVRNALQALGPDGGEIILRTRTAFQLTLHGVRYRLAARIDVEDNGP 290

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               P     +    V        +       L  ++  ++       H    S  L 
Sbjct: 291 GI-PPHLQDTLFYPMVSGREGGTGLGLSIARSLIDQHSGKIEFTSWPGH-TEFSVYLP 346


>gi|302338341|ref|YP_003803547.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301635526|gb|ADK80953.1| multi-sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 630

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 82/244 (33%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVM 50
           + +       +  + A+  L   + HD  + +  I     +L+E            D + 
Sbjct: 245 LRELEDQLRQAQKMEAIGRLAGGVAHDFNNILTVIMGYTTMLEEKLHSGEDVASDIDGIQ 304

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           +  + ++      L F R        +D    + ++E++++  ++ D  + +  + E+ D
Sbjct: 305 KAAKKATALTRQLLAFSRRQVLKPKQIDLNRLVREMEKMLQRLVSEDITMTLLPSAERSD 364

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDS---------------KNENIFSLK 152
           +  +  +I   L      A  ++P GGKV I+ ++                 +  + S+ 
Sbjct: 365 VYVDPGQIEQVLMNLVVNARDAMPGGGKVFITTKNHEVERAFPSAMGTVVPGDYVVLSVS 424

Query: 153 INGNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      +    I +    +  D     +    V  +  ++   ++ E   D      
Sbjct: 425 DTGTGINDQDL-EMIFEPFYTTKPDEKGTGLGLSTVYGIVKQSNGNIVVETSSDRGTSFH 483

Query: 211 ALLE 214
             L 
Sbjct: 484 VYLP 487


>gi|289624367|ref|ZP_06457321.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646634|ref|ZP_06477977.1| phytochrome:GAF:ATP-binding region, ATPase-like:histidine kinase A,
           N-terminal:HWE histidine kinase [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868649|gb|EGH03358.1| phytochrome:GAF:ATP-binding region [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 998

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 73/236 (30%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQ--------- 51
           + + +     ++ L   L + + HD+ +P+  I     ++    I D   +         
Sbjct: 523 LERQVQREQEAVRLRDELVAVVSHDLRNPMSIIIMQCGMMQRWAISDTHSENRNIRRALG 582

Query: 52  -LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            + + ++    +    +  A    G          +  ++E+  ++   +      E   
Sbjct: 583 TIEKATTRMNSLLEDLLDTAQIEAGRYQLSRLPLGVTSLLEEACSLLVMLTTEKNIELNC 642

Query: 111 ----------LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           ++L NL   A    P+GG++ I    S+NE +F +  +G     
Sbjct: 643 TAAQGLVINADPERIFQVLSNLVGNAIKFTPKGGRINIDAVASENEVLFKVSDDGIGIPA 702

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         E     + +  Y    +   +  RL  E   D   V S  L 
Sbjct: 703 EHLPYIFQRYWSVKEGNPRGNGLGLYICQGIITAHGGRLWAESSVDSGSVFSFRLP 758


>gi|228914505|ref|ZP_04078114.1| hypothetical protein bthur0012_17350 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228844824|gb|EEM89866.1| hypothetical protein bthur0012_17350 [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 288

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVM 50
           MAK++  ++ +      +   + S I HD+ +P+ ++    +LL           E  V 
Sbjct: 46  MAKSLKESIENEKKSQEMKNEMISNISHDLRTPVTSLIGYADLLGNKLHSNGEECEQYVS 105

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
            L R S          +         ++    + +++  IE  +                
Sbjct: 106 ILKRKSYELKNQVDDLLEYCQINYREIELQKSVVNMKAFIEQIMIDFVPQLDDADMSFCI 165

Query: 111 LSRE----------RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
              +            ++  N+   +      G ++ I +          +K  G     
Sbjct: 166 KGDKGLHVEMDVALMVRLFENVISNSIMYGKDGKQILIQISKRDMNVEIEIKNFGQCIPN 225

Query: 161 ---PEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F +   G            +       +A  +K  +     D    V + +L 
Sbjct: 226 ENLPYVFEKFYRGEKSRSSHTGGKGMGLAIARSIAELHKGDIAVRSNDKE-TVFTIVLP 283


>gi|229074319|ref|ZP_04207359.1| hypothetical protein bcere0024_2440 [Bacillus cereus Rock4-18]
 gi|228708806|gb|EEL60939.1| hypothetical protein bcere0024_2440 [Bacillus cereus Rock4-18]
          Length = 281

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 62/237 (26%), Gaps = 22/237 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSM 58
           + K              L S I HDI +P+ +I   ++ L +     E E  + +++  M
Sbjct: 39  LEKVRIEAKRYEKSRKQLLSSISHDIRTPLTSIIGYIDALKDGVAASEIEKQEYLKILYM 98

Query: 59  SAIIRLKFMRLAFGYTGS---------------VDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +      +   F                      +   L D    +       + +   
Sbjct: 99  KSNNLKHLVDEIFNMAKLDANEFPLKEEELDFSEVTREVLIDFLPELSKHNIELQVLIPE 158

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
            T   I       +I+ NL   A      G  V I + ++  E    +   G      + 
Sbjct: 159 STCPIIADHLSLMRIIGNLIKNAIYYGKDGKTVGIELLETNTEYELLIWDKGPGIPKHDL 218

Query: 164 FTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                          S+  S  +       L   N   +  E I          + K
Sbjct: 219 QNIFERMYRSEQSRTSSFGSSGLGLSISKALVERNGGHIWVESIPWKRTTFGFSIPK 275


>gi|257784847|ref|YP_003180064.1| histidine kinase [Atopobium parvulum DSM 20469]
 gi|257473354|gb|ACV51473.1| histidine kinase [Atopobium parvulum DSM 20469]
          Length = 457

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 18/237 (7%), Positives = 63/237 (26%), Gaps = 26/237 (10%)

Query: 4   NICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
            +   +    L  +   +   H++ +PI  I    ++LD     +  + DE +  ++  S
Sbjct: 217 KLLRRMQEAKLQQMRFVNDASHELRTPIAVIRGYTDMLDRWGKTDEAVLDESITALKSES 276

Query: 58  MSAIIRLKFM---------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                 ++ +                       + +       I+      +  D+    
Sbjct: 277 QHMHDLVEQLLFLARGDAGRNTLTKIQLNLAQIASEVWEESEMIDPDHRYALKFDQSALS 336

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP- 161
               + +  +    + +  +   A         ++ +V   +     S++  G       
Sbjct: 337 DDHYQVLADTAMIKQSIRIIVQNAARYSAAQTTISFNVTYDEKTVQVSIEDEGMGISEAA 396

Query: 162 --EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +    +     + +   +       +   +   +     +      + +L 
Sbjct: 397 AAHIFERFWRADNARIESNEGSGLGLSIAKWIVDNHDGSIKVVSREGVGTRFTIVLP 453


>gi|254512491|ref|ZP_05124558.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
 gi|221536202|gb|EEE39190.1| sensor histidine kinase/response regulator [Rhodobacteraceae
           bacterium KLH11]
          Length = 763

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/236 (11%), Positives = 71/236 (30%), Gaps = 31/236 (13%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAII 62
           +    + A+  L   + HD  + + AI    +LL    D+       +  I  ++  A  
Sbjct: 385 VQGQKMQAVGQLAGGVAHDFNNLLTAISGHCDLLLLRHDQNDPNYGDLVQINQNANRAAA 444

Query: 63  RLKFMRLAFGYTGSV----DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            +  +              D    + D+  ++   +    R+ +S       +  ++ ++
Sbjct: 445 LVSQLLAFSRKQTLRPEVLDLRDTISDLIHLLNRLVGEKVRLTLSHDPVLKPVCADKRQL 504

Query: 119 LLNLFM---VAHASLPRGGKVTISVQ---------------DSKNENIFSLKINGNLARF 160
              L      A  ++P GG++ I  +                        +  +G     
Sbjct: 505 EQVLMNLVVNARDAMPEGGEIRIETEVLTLDRALSRDRATVQPGEYVTVKVIDSGVGI-P 563

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +K  ++ +    +    +   +    V  +  +    +  + I       + LL 
Sbjct: 564 ADKLQKVFEPFYTTKRTGEGTGLGLSTVYGIVKQTGGFIFVDSIRGKGTEFTVLLP 619


>gi|209527708|ref|ZP_03276205.1| cyclic nucleotide-binding protein [Arthrospira maxima CS-328]
 gi|209491880|gb|EDZ92238.1| cyclic nucleotide-binding protein [Arthrospira maxima CS-328]
          Length = 381

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 64/224 (28%), Gaps = 14/224 (6%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
           N   +   M+L+  + + I HD  SP   I  S  ++ E+  ++E  +   L SM     
Sbjct: 140 NQMVHKQKMELLGEMVNTIVHDFRSPFTGIQLSSSMIRELHPDEETEEWCDLISMQIQRM 199

Query: 64  LKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           L        ++              + +     + +V      V+  + +      +   
Sbjct: 200 LGMAEEVLEFSRGSTSLLLKPVAIEEIIQQFEKLNRVYLHSSDVELVIDIPDGIYVLADL 259

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
            +  ++L NL   A  + P      I       N  +  +K NG           + D  
Sbjct: 260 NKIIRVLQNLVSNAVEAFPNSQGKIIITATTQDNWGVIMVKDNGTGI-PKAIQEHLFDAF 318

Query: 172 VE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           V         +       +   +   +  E            L 
Sbjct: 319 VTYGKQGGTGLGTAIAKSIVEAHGGAIRFESTAGAGTTFWIRLP 362


>gi|52144319|ref|YP_082510.1| sensor histidine kinase [Bacillus cereus E33L]
 gi|51977788|gb|AAU19338.1| sensor histidine kinase [Bacillus cereus E33L]
          Length = 464

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 59/215 (27%), Gaps = 21/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----------------MSAIIRL 64
            I HD+ +P+ +I    E++     +    ++ + +                        
Sbjct: 247 NISHDLKTPLSSIKGYSEVIGNREYKITAQEMYQYAEVIQNKSIYIEKLIDDLKLTYQLK 306

Query: 65  KFMRLAFGYTGSV--DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
             +      T  +   +   + +   +      + +   +              + ++NL
Sbjct: 307 NTLLPIHKTTVDIVNLTREIIIEFLNMPHYENRIIEFECLQEEIIIKADQGLIQRAIVNL 366

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID---SH 179
              A         + + ++ +    I +++ NG      +           +  D     
Sbjct: 367 VNNALIHTDNKTLIQVCIKQTIGYTIVTIEDNGEGINKSDLPHIFDRYFRGTNTDPKSGS 426

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +   +   +  E I+ +   ++  L 
Sbjct: 427 GLGMAIVKEIIVAHGGEIAVESIEGNGTKITFQLP 461


>gi|56479368|ref|YP_160957.1| two-component hybrid sensor kinase/response regulator [Aromatoleum
           aromaticum EbN1]
 gi|56315411|emb|CAI10056.1| Two-component regulatory system protein containing hybrid kinase
           and response regulator domains [Aromatoleum aromaticum
           EbN1]
          Length = 1015

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 66/219 (30%), Gaps = 23/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG-- 72
           + + H++ SP+ A+    ++L      E        + I+ +       +  +       
Sbjct: 636 AIVSHELRSPLNALKGWSQVLTASGNPEPATVLRAAEAIKRNIDHQARLIDDLLDTSRII 695

Query: 73  ------YTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM- 124
                  +  V+ +  +     +  +   A    ++V      + ++ +  ++   +   
Sbjct: 696 SGKLELNSRRVNLVEIVHAAIDLSWDTAKAKRIELRVDTACPSLMINGDHDRLQQIVINL 755

Query: 125 --VAHASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGN--VESTID 177
              A    P GG V + +   +   I S+  +G        P  F +    +  +     
Sbjct: 756 LANALKFTPEGGWVELRLAQGETSVILSVADSGVGIEAGFLPHVFDRFSQADTSMTRRHQ 815

Query: 178 SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
              I    V  L   +   +  E        V +  L +
Sbjct: 816 GLGIGLALVRNLVELHGGAVRVESAGPGCGSVFTVELPR 854


>gi|42522578|ref|NP_967958.1| phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
 gi|39575110|emb|CAE78951.1| Phosphate regulon sensor protein phoR [Bdellovibrio bacteriovorus
           HD100]
          Length = 477

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/237 (8%), Positives = 59/237 (24%), Gaps = 31/237 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           M +     +              H++ +P+ +I   ++ L E           + + ++ 
Sbjct: 246 MKRAEQIRMD-------FVGNASHELRTPLTSIKGYVDTLKEDVKTGQIQQAGKFLDIVS 298

Query: 55  LSSMSAIIRLKFMRLAF---------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            +    +  +  M                      I    + ++       +  ++V+  
Sbjct: 299 RNIDRLMDLVNDMLSINTLEASNSELKLEMIHPLAISEHVVSELAVMAAEKNITIRVNGD 358

Query: 106 GEKIDLSRER-AKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    +  ++L NL   A   +P          +D K   I  +  +G        
Sbjct: 359 VPPFLADARKVEQVLRNLVSNAVKYIPSGKTIQIRWERDIKEYIILRVIDDGQGIPEQHL 418

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +                 +    V  +   +   +  + I D          
Sbjct: 419 -DRLFERFYRIDKGRTRDAGGTGLGLAIVKHIMQSHGGTVAVKSIVDQGSEFICSFP 474


>gi|83944051|ref|ZP_00956508.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36]
 gi|83845298|gb|EAP83178.1| sensory transduction histidine kinase [Sulfitobacter sp. EE-36]
          Length = 798

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/232 (10%), Positives = 63/232 (27%), Gaps = 28/232 (12%)

Query: 10  SSMDLVAL---LCSRICHDIISPIGAIHNSLELLD---EVGIEDEVMQLIRLSSMSAIIR 63
            S  L  +     + + H++ +P+ +I  +L LL+   +   +   ++L+++++ +    
Sbjct: 557 ESNKLEQMKHDFVATVSHELRTPLTSIKGALGLLEAQTQDDPDAGAVRLVQIATANCDRL 616

Query: 64  LKFMRLAFGYTGSV--------------DSLIGLGDIEQVIEDFIAVDKRVQV-SWTGEK 108
           +  +                        D +    +  +       V+  V         
Sbjct: 617 VALVNDILDMEKINAGSMTVVPKPEKLGDIVTLAAEQVEPYASEWKVEIDVDTPDPDHHV 676

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +       ++L NL   A         VT++     +    S+   GN     E   +I 
Sbjct: 677 LTDKNRIMQVLTNLLSNACKFAYPETAVTVTTAPVGDMTKISVTNLGNGI-SEEFRERIF 735

Query: 169 DGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +       L       +  + +     V      
Sbjct: 736 QPFSQAEASNTRQRGGTGLGLNISRHLVEAMGGEIGFDSVPGEETVFWFTCP 787


>gi|330816277|ref|YP_004359982.1| Phosphate regulon sensor protein PhoR [Burkholderia gladioli BSR3]
 gi|327368670|gb|AEA60026.1| Phosphate regulon sensor protein PhoR [Burkholderia gladioli BSR3]
          Length = 437

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 71/233 (30%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + ++I     +  +     + + H++ +P+  +   LE L E           + ++   
Sbjct: 193 LTQDITEVERTDAMRRDFVANVSHELKTPLTVLSGFLETLRELPLSDEERARYLDMMEQQ 252

Query: 57  SMSAIIRLKFM----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG 106
           +      +  +          +        +D ++G  +           +   ++  T 
Sbjct: 253 AGRMRKIVTDLLVLAKLEGEGKPPTDKPVDMDDVLGHLEDVAQTLSAGHHEISFEIDDTL 312

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-- 164
                  E    L NL   A    P GGK+ +  +   ++ +FS+K +G      +    
Sbjct: 313 SVTGAETEIFSALGNLVTNAVRYTPEGGKIRVCWRRDGSQAVFSVKDSGFGIPAEDLPRL 372

Query: 165 -TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +      +         +    V  +   +  +LL +  +      +A   
Sbjct: 373 TERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHDGQLLIQSEEGRGSTFTARFP 425


>gi|253997505|ref|YP_003049569.1| signal transduction histidine kinase NtrB [Methylotenera mobilis
           JLW8]
 gi|253984184|gb|ACT49042.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Methylotenera mobilis JLW8]
          Length = 364

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/235 (9%), Positives = 64/235 (27%), Gaps = 25/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+     +       LL   + H+I +P+G +  + +LL+       + +  ++    A 
Sbjct: 120 AREERMLIQQQANAELL-RNLAHEIRNPLGGLRGAAQLLEHELPSPSLREYTQVIIKEAD 178

Query: 62  IRLKFMR-----LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER- 115
                M               +    L  +  ++         ++  +     ++  +R 
Sbjct: 179 RLQALMDRLLIPHRVPKYQPTNIHEVLERVRSLLLAESPRSILIKRDYDLSLPEIIGDRE 238

Query: 116 --AKILLNLFMVAHASLPRGGKVTISVQD--------------SKNENIFSLKINGNLAR 159
              + +LN+   A  ++         +                 +      +  NG    
Sbjct: 239 KLIQAVLNIARNAVQAMQSNKTPNSQITFKTRAERQVTLARKRYRVAIKLEIIDNGPGI- 297

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +I    V  +     +          ++   +  E    +    + LL 
Sbjct: 298 PADIRDRIFYPLVSGSEGGTGLGLTLAQTFVTQHHGMIDCESTPGN-TRFTILLP 351


>gi|222109842|ref|YP_002552106.1| histidine kinase [Acidovorax ebreus TPSY]
 gi|221729286|gb|ACM32106.1| histidine kinase [Acidovorax ebreus TPSY]
          Length = 1137

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 67/245 (27%), Gaps = 32/245 (13%)

Query: 1   MAKNICFNLSSMDLV------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           +         + DL       +   + + H++ +P+ +     +LL +   ++   + +R
Sbjct: 440 LTAQDALEAKARDLAQASQYKSEFLANMSHELRTPLNSSLILAKLLADNKQQNLTAEQVR 499

Query: 55  LSSMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
            +                        A   +  +  +     +  V+E   A  +   + 
Sbjct: 500 YAQTIHNAGTDLLNLINDILDLSKIEAGQTSVEIGQVTVAKVVAGVMEPLRAQAQDKGLQ 559

Query: 104 W--------TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
           +               ++  A+IL NL   A     RG           +   F+++  G
Sbjct: 560 FNAVVEPGVPAFITSDAQRLAQILKNLLSNALKFTARGEVTLRVFAGDNDTLCFAVRDTG 619

Query: 156 NLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                P++  +I D                 +       LA      +  +       V 
Sbjct: 620 IGI-APDQQERIFDAFHQADGSTHRKYGGTGLGLSISRDLAQLLGGSIAVQSAPGEGSVF 678

Query: 210 SALLE 214
           +  L 
Sbjct: 679 TLTLP 683


>gi|194431244|ref|ZP_03063537.1| osmolarity sensor protein EnvZ [Shigella dysenteriae 1012]
 gi|194420699|gb|EDX36775.1| osmolarity sensor protein EnvZ [Shigella dysenteriae 1012]
 gi|315137980|dbj|BAJ45139.1| osmolarity sensor protein envZ [Escherichia coli DH1]
 gi|320666494|gb|EFX33477.1| osmolarity sensor protein [Escherichia coli O157:H7 str. LSU-61]
 gi|323179071|gb|EFZ64645.1| osmolarity sensor protein envZ [Escherichia coli 1180]
 gi|332085859|gb|EGI91023.1| osmolarity sensor protein envZ [Shigella dysenteriae 155-74]
 gi|332090391|gb|EGI95489.1| osmolarity sensor protein envZ [Shigella boydii 3594-74]
 gi|332749497|gb|EGJ79914.1| osmolarity sensor protein envZ [Shigella flexneri K-671]
 gi|332750347|gb|EGJ80758.1| osmolarity sensor protein envZ [Shigella flexneri 4343-70]
 gi|332763613|gb|EGJ93852.1| envZ [Shigella flexneri 2930-71]
 gi|332996408|gb|EGK16035.1| osmolarity sensor protein envZ [Shigella flexneri VA-6]
          Length = 447

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 232 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 291

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 292 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 349

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 350 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 409

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 410 VDNHNGMLELGTSERGGLSIRAWLP 434


>gi|167769136|ref|ZP_02441189.1| hypothetical protein ANACOL_00459 [Anaerotruncus colihominis DSM
           17241]
 gi|167668776|gb|EDS12906.1| hypothetical protein ANACOL_00459 [Anaerotruncus colihominis DSM
           17241]
          Length = 490

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 18/218 (8%), Positives = 59/218 (27%), Gaps = 20/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAIIRLKFMRLA--- 70
             + + H++ +P+  I   ++ + +        D+ ++++          ++ M      
Sbjct: 255 FTANVSHELRTPMTTIAGFIDGILDGTIPPEKRDDYLRIVSDEVKRLSRLVRSMLNIARI 314

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNL 122
                       D    +       E  +             K+ +  +     +++ NL
Sbjct: 315 EAGELQIKPDLFDVNETVIRTVFTFEKPLEEKGIEVRGLDNGKVMVEADPDLIHQVVYNL 374

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI-----D 177
              A       G + +S +         +K +G+     E                    
Sbjct: 375 IENAVKFCNEHGYIEVSYRADDAYTYVGIKNSGDGIAKDEIPHIFDRFYKTDKSRSREKG 434

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  + V  + + +   ++   ++         + K
Sbjct: 435 GAGLGLHIVRSIVNLHGGDIVVRSVEGEYCEFVFSIPK 472


>gi|153872447|ref|ZP_02001337.1| sensor signal transduction histidine kinase [Beggiatoa sp. PS]
 gi|152071085|gb|EDN68661.1| sensor signal transduction histidine kinase [Beggiatoa sp. PS]
          Length = 536

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 63/226 (27%), Gaps = 17/226 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMS 59
                      D VA+L     H+I +P+  I ++  +L+  + G   E  Q       +
Sbjct: 313 QHERTARYEQADFVAMLF----HEIKTPLTVIDSAATVLEHLDDGYRCETAQRYDAIHHA 368

Query: 60  AIIRLK-------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                +         R              L  + +++ D       ++         + 
Sbjct: 369 VERLNRLVEQSLSHERQGLDDIHLNLQPTDLRTLTRIVVDSFHTTPPLRTDVPTSVPLVQ 428

Query: 113 RERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-KFTQIV 168
            +   + + L      A    P    + I +    +     ++  G     P+  F +  
Sbjct: 429 ADPELLRIALANLVDNAIKYSPSEQDIHIHLDPQPDYIQLRVRDRGIGIDKPDKIFDRFW 488

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  S +    +  Y V  + H +   +  +         +  + 
Sbjct: 489 RSSRTSNVAGAGLGLYLVQRIMHAHGGDVQVQSALGQGSCFTLSMP 534


>gi|45443077|ref|NP_994616.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
 gi|45437944|gb|AAS63493.1| putative hybrid two-component system regulatory protein [Yersinia
           pestis biovar Microtus str. 91001]
          Length = 851

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 65/236 (27%), Gaps = 23/236 (9%)

Query: 2   AKNICFNL---SSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIR 54
            K +   L     M  V  L   + HD  + +  I  SLEL      +       ++   
Sbjct: 482 RKALEEALVHSQKMKAVGQLTGGLAHDFNNLLAVIIGSLELTATDSSDATRIHRALKAAE 541

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
             +      L F R    +  +V     L +++ +I   +     + +           +
Sbjct: 542 RGAQLTQRLLAFSRKQSLHPRAVAMKELLDNLDPLIRHSLPAHLTLTIEAQQPAWHAWID 601

Query: 115 RAKILLNLFM---VAHASLP----------RGGKVTISVQDSKNENIFSLKINGNLARFP 161
             ++   +      A  ++              +V       ++  +  +  +G+     
Sbjct: 602 VNQLENAIINLVMNARDAMEGRSGEIKIRTWNQRVERGEGRKQDMVVLEVADSGHGMTTA 661

Query: 162 EKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               Q+ +    +        +    V     ++  R+  E        +   L +
Sbjct: 662 -VKEQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGRVQIESEPGKGTRVCLQLPR 716


>gi|124262616|ref|YP_001023086.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1]
 gi|124261862|gb|ABM96851.1| putative sensor/response hybrid [Methylibium petroleiphilum PM1]
          Length = 527

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 60/234 (25%), Gaps = 33/234 (14%)

Query: 14  LVALLCSRICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSAIIRLKFMRL 69
           + +   + + H+I +P+  +  + ELL + G+ +    +++ L+  SS + +  +  +  
Sbjct: 1   MKSRFLATMSHEIRTPLNGVVGAAELLQKNGLSEREKAQMVSLLTQSSRALMALINDILD 60

Query: 70  A--------FGYTGSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERA 116
                          ++    + +  ++     A                          
Sbjct: 61  WSKLDVGKVMIERHPINLRALVFESNELFAAQAANKDIELTSSCNPDVPRTLHGDPTRIR 120

Query: 117 KILLNLFMVAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +I+ NL   A     R                   +         +   G      +   
Sbjct: 121 QIVNNLVSNAVKFTERGGVHIHLSIDGIDPSERHQEGDPRTVRIEVSDTGIGISPEKLGK 180

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +              +       LA+    R+          V +ALL 
Sbjct: 181 LFKAFSQGDVSVTRNFGGTGLGLVISQELANLMGGRIEVSSTPGVGSVFTALLP 234


>gi|325916242|ref|ZP_08178523.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
 gi|325537536|gb|EGD09251.1| signal transduction histidine kinase [Xanthomonas vesicatoria ATCC
           35937]
          Length = 537

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 68/224 (30%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI  + +LL+E       +  ++Q+I        
Sbjct: 307 RAESLTLSAMGRFSASLAHEIRNPLAAISYASQLLEESPDIGDADRRLLQIIHQQCQRTN 366

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113
             ++ +        +    + L    +           ++           +   +   +
Sbjct: 367 GIVESVLGLARRERASPENLDLAAFVRRFVVEYRQTLSMETDILEASIQGSSVHALVDPK 426

Query: 114 ERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +IL  L   A      +    +V + V+  +   +  +   G          Q+   
Sbjct: 427 HLHQILTALVHNALKYGRVMDEPARVKLRVERQERMAVIDVVDRGPGI-PEAVAAQLFRP 485

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ +L    +          L+
Sbjct: 486 FYTTSEHGTGLGLYIAQELCRANQAQLDYVPVPGGGACFRITLQ 529


>gi|323938338|gb|EGB34593.1| osmosensitive K+ channel His kinase sensor domain-containing
           protein [Escherichia coli E1520]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|307825854|ref|ZP_07656070.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacter tundripaludum SV96]
 gi|307733162|gb|EFO04023.1| integral membrane sensor signal transduction histidine kinase
           [Methylobacter tundripaludum SV96]
          Length = 565

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 72/223 (32%), Gaps = 16/223 (7%)

Query: 6   CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----EDEVMQLIRLSSMS 59
              +    L +L  L + I H+I +P+GAI ++ +LL E       +  + ++I+  S+ 
Sbjct: 334 NQQVQQSKLASLGRLTASIAHEIRNPLGAISHAGQLLSENPQLSVQDRRLTEIIQTHSVR 393

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--------WTGEKIDL 111
               ++ +      T S    I L            ++  V V          +      
Sbjct: 394 VNHIIEDILQLSRRTDSRREKIRLKPWLDNYLKNFTLEHAVNVDAFQLLYPDESLCAFID 453

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFS-LKINGNLARFPEKFTQIVDG 170
                +I  NL   A           I    +  +     +  NG+     E  + + + 
Sbjct: 454 PGHLRQITDNLCRNALKYGKPEAGPIILRAFALQQAPCIEVIDNGSGI-SREHQSHLFEP 512

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              ++     +  Y    LA  N+ +L   + DD        L
Sbjct: 513 FFTTSSSGTGLGLYISKELAELNQAKLSYYLTDDSRSCFRLCL 555


>gi|302386529|ref|YP_003822351.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
 gi|302197157|gb|ADL04728.1| integral membrane sensor signal transduction histidine kinase
           [Clostridium saccharolyticum WM1]
          Length = 467

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 73/238 (30%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50
           M+KN+   L+ ++L         S   H++ +PI ++    ELL+      E    D + 
Sbjct: 224 MSKNVKEYLNQIELEKQIRQEFFSNASHELKTPITSVQGYAELLESGIIQDEEQKMDFIR 283

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------VDKRVQVSW 104
           ++ + +     +    + ++       + L     +  +++D +           V +  
Sbjct: 284 RIKKEAVNMNHLINDILMISRLEAKEAEVLKNDVRLSILLDDIVESLKPLAASHEVMIHV 343

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             + + +     ++          A      GG+V ++V +     I  +K NG      
Sbjct: 344 DCKPLCIYANGQQMKELFGNLISNAIKYNKPGGQVWVTVTEENRNVIIRVKDNGMGIPKE 403

Query: 162 ---EKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                F +    +           +    V  + +     +      D        + 
Sbjct: 404 SLGRIFERFYRVDKGRSKKQGGTGLGLSIVKHIVNFYHGTITVRSELDVGTEFVVKIP 461


>gi|225377627|ref|ZP_03754848.1| hypothetical protein ROSEINA2194_03278 [Roseburia inulinivorans DSM
           16841]
 gi|225210491|gb|EEG92845.1| hypothetical protein ROSEINA2194_03278 [Roseburia inulinivorans DSM
           16841]
          Length = 352

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 64/213 (30%), Gaps = 17/213 (7%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA-------FG 72
           S + H+I +P+  I N+ ELL      ++  +   +   +     + +            
Sbjct: 139 SNVSHEIKTPLAIIQNNAELLCMEKTPEKQKEYAEVIFQTTKRLSELISNILKLNKLEKQ 198

Query: 73  YTGSVDSLIGLGDIEQVI-------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
               V     L               +   +     +  + +    +     +  NLF  
Sbjct: 199 AITPVAEEYDLCGQLAECAVNYEPVWEKKDIGFDADMEDSVKITADAALMELVWNNLFSN 258

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDSHDIQ 182
           A      GG + ++ Q   +E   S++ NG           F +   G+    +  + + 
Sbjct: 259 AVKFTEPGGTIKLTEQSDDSEIRVSVEDNGCGMTEETRKHIFEKFYQGDTSHAMAGNGLG 318

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
               + +   N  ++  E         + ++ K
Sbjct: 319 LALSLRVLQLNDYKIEVESEPGRGSKFTVIIPK 351


>gi|161615420|ref|YP_001589384.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364784|gb|ABX68552.1| hypothetical protein SPAB_03191 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 421

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 67/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         +++
Sbjct: 199 ANVSHELRTPLTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEA 258

Query: 80  LIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   E+V    +                    +V  +   +    +    + NL   
Sbjct: 259 APALLLNEKVDVPMMLRVVEREAQTLSQQKHTFTFEVDDSLSVLGNEEQLRSAISNLVYN 318

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+S +   +   F ++ NG      E   ++ +                
Sbjct: 319 AVNHTPAGTHITVSWRRVAHGAEFCIQDNGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 377

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  +         S +L 
Sbjct: 378 GLGLAIVKHALNHHESRLEIDSSPGKGTRFSFVLP 412


>gi|152969278|ref|YP_001334387.1| sensor protein KdpD [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150954127|gb|ABR76157.1| sensor for high-affinity potassium transport system [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 895

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +          L   L + + HD+ +P+  +    E+L               +E+ Q 
Sbjct: 651 EEQARLTSERESLRNSLLAALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQANEIRQH 710

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKI 109
           +  ++      L   R+  G        + L ++       +      + +Q+       
Sbjct: 711 VLNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALRMLEPSLGGQHIQLDLPDPLQ 770

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +  +     ++L+NL   AH        + I  +    +    +  NG      +    
Sbjct: 771 LVHVDGPLFERVLINLLENAHKYAGARASIGIRAEADARQLSLEVWDNGPGIPAGQEQTI 830

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +   +      +        L 
Sbjct: 831 FDKFARGNKESAIPGVGLGLAICQAIVDVHGGTISASNRPEGGASFRVTLP 881


>gi|149277244|ref|ZP_01883386.1| two-component sensor histidine kinase, phosphate regulation
           [Pedobacter sp. BAL39]
 gi|149232121|gb|EDM37498.1| two-component sensor histidine kinase, phosphate regulation
           [Pedobacter sp. BAL39]
          Length = 341

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 65/237 (27%), Gaps = 23/237 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-----LLDEVGIEDEVMQLIRLS 56
            + I              S + H+  +P+ A+   +E     LLD+     + ++    +
Sbjct: 103 KREIEILRKQEQFRREFLSNVSHEFKTPLFAVQGYIETLQDCLLDDPEQAMKFLKKAETN 162

Query: 57  SMSAIIRLKFMRLAFG-YTGSVDSLIGLGDIEQV----IEDFIAVDKRVQVSWTGEKIDL 111
                  +  +       +G +       D   +    ++      K   ++ + +    
Sbjct: 163 VERLSYLINDLDSISKLESGEIPINYEKFDFVVLAKEVMDVLEDRAKTKHITISFKDKYT 222

Query: 112 SRER--------AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        ++++NL   +       G   I + +  ++ +  +  +G        
Sbjct: 223 HPAYVRADREKIRQVMINLIQNSLKYGKDHGSTAIKIFELHDQYLVEVTDDGIGIDEKHL 282

Query: 164 ---FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              F +      +         +    V  +   ++  +            +  LEK
Sbjct: 283 PRLFERFYRIDTHRSRQEGGTGLGLAIVKHILEAHQQIISVRSTLQIGSTFAFTLEK 339


>gi|149191764|ref|ZP_01870003.1| nitrogen regulation protein NR(II) [Vibrio shilonii AK1]
 gi|148834406|gb|EDL51404.1| nitrogen regulation protein NR(II) [Vibrio shilonii AK1]
          Length = 336

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/234 (10%), Positives = 66/234 (28%), Gaps = 23/234 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           + + +  +        LL   + H+I +P+G +  + +LL ++  +  + +   +    A
Sbjct: 105 LTQELNQHAQQQA-AKLLVRGLAHEIKNPLGGLRGAAQLLSKMLPDPSLNEYTNIIIEQA 163

Query: 61  IIRLKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
                 +    G          +  + L  + Q++E        ++  +      +  + 
Sbjct: 164 DRLRALVDRLLGPQRPGTKKEENLHLILEKVRQLVELDAGTSLTIERDYDPSLPAILMDT 223

Query: 116 AKILLNLFMVAHAS---------------LPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +I   L  +   +                    +  I  Q  K      +  NG     
Sbjct: 224 DQIEQALLNITSNAAQILKQQDNGQITLRTRTVHQANIHGQRHKLAARIEIIDNGPGI-P 282

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V        +       L  ++  ++  E       + +  L 
Sbjct: 283 AELQDTLFYPMVSGREGGTGLGLSISQNLIDQHNGKIDVESWPGR-TIFTIYLP 335


>gi|119511327|ref|ZP_01630441.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
 gi|119464033|gb|EAW44956.1| two-component hybrid sensor and regulator [Nodularia spumigena
           CCY9414]
          Length = 386

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 63/237 (26%), Gaps = 24/237 (10%)

Query: 2   AKNICFNLSSMDL---VALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQL 52
            +     + + +L    +   S + HDI +P+  I  +  LL           +   +++
Sbjct: 148 EERTAELVKANELNQFKSEFVSMLSHDIRNPLNTILLAAGLLQNYDDKLTKETKYNHLEM 207

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG------ 106
           IR +  +    L  + L              G   ++    +  +  +            
Sbjct: 208 IRSAIKNMAQLLDEVSLIGQADAGKLQCELFGLDLELFCQQLIDEAELSTQEKNLTIEFT 267

Query: 107 ------EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                 + +        IL NL   A      GGK+   +   K+   F ++  G     
Sbjct: 268 SVGKLGDAVWDEILLRHILGNLLGNAIKYSQPGGKIQFELISQKHTVTFLIQDCGIGIPK 327

Query: 161 PEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F           I    +    V      +   +L           +  L 
Sbjct: 328 EDLPMLFHPFHRAANVGEIPGTGLGLSIVKKCVEAHGGEILVNSKVGIGTAFTVTLP 384


>gi|167646567|ref|YP_001684230.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Caulobacter sp. K31]
 gi|167348997|gb|ABZ71732.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Caulobacter sp. K31]
          Length = 376

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 62/224 (27%), Gaps = 29/224 (12%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQLIRLSSMSAIIRLKFMRLAF 71
           L   + H+I +P+  I  + +LL       +  +   ++               F     
Sbjct: 140 LGRMLAHEIKNPLAGIRGAAQLLKTGASAADQPLAQLIVDETDRIRRLVDRMEAFSDEVP 199

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILLNLFMVAHA 128
           G   +V+    L  +  ++ + +A    ++  +     D+  +     ++ LNL   A  
Sbjct: 200 GPREAVNIHQVLDRVRALVVNGVADGLDLREHYDPSLPDVWGDEDHLIQVFLNLVKNAAE 259

Query: 129 SLPRGGKVTISVQDSKNE------------------NIFSLKINGNLARFPEKFTQIVDG 170
           +    G    ++                            ++ NG           +   
Sbjct: 260 AAHARGDGQGTLSIHTAWRPGVRVRGSDGKAAAGAPIEIRIQDNGPGVPDS-LRDHLFQP 318

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            V +  +   +    V  L   +   +  E       V   LL 
Sbjct: 319 FVTTKANGTGLGLALVTKLVTSHGGLIDFESEPGR-TVFRVLLP 361


>gi|39933394|ref|NP_945670.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
 gi|39653019|emb|CAE25761.1| sensor histidine kinase with a response regulator receiver domain
           [Rhodopseudomonas palustris CGA009]
          Length = 636

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 60/222 (27%), Gaps = 24/222 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----LKFMRLAF 71
           + L +   H+I +P+  I     LL +  +  E     +    S         + +  A 
Sbjct: 124 SRLLAMASHEIRTPLNGIIGMSRLLLDTPLSAEQATYAKAVKTSGEALLALTDELLDYAR 183

Query: 72  GYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKIDLSRERAKIL 119
              G ++       +  +IED I             +   +        I  +    ++L
Sbjct: 184 IEAGKIELDCRPFVLSSLIEDIIELLAPRAQARGLEIAADIDERLPVSLIVDAARLRQVL 243

Query: 120 LNLFMVAHASLPRGGKV-TISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------V 172
           LNL   A      GG    +   D   E    ++  G     P+   +I          +
Sbjct: 244 LNLCGNAIKFTETGGVALIVERGDQSGELRIIVRDTGIGI-APDAQARIFHEFEQADAGI 302

Query: 173 ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +      R+  E         +  L 
Sbjct: 303 ARNFGGTGLGLSISDRIVAAMGGRIALESKPGEGSTFTITLP 344


>gi|30248080|ref|NP_840150.1| sensory transduction histidine kinase [Nitrosomonas europaea ATCC
           19718]
 gi|30179965|emb|CAD83960.1| Sensory transduction histidine kinases [Nitrosomonas europaea ATCC
           19718]
          Length = 1229

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 62/249 (24%), Gaps = 38/249 (15%)

Query: 2   AKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
            +++       +L      A L + + H+I +P+  +   +++L +  +     ++  L 
Sbjct: 548 RQDLEQARRDAELANQAKSAFLAA-MSHEIRTPMNGVIGMIDVLSQTSLSSYQKEMTDLI 606

Query: 57  SMSAIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             SA + L+               + +          +         +     V+  + V
Sbjct: 607 RESAFVLLEIIEDILDFSKIEAGRLEIEQRPISLEKVVERACGTLTHMAASKEVELILFV 666

Query: 103 S--WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV---------QDSKNENIFSL 151
                      +    +IL+NL   A        +    +                +F +
Sbjct: 667 DPALPKNVAGDALRLRQILINLINNAIKFSSGMSRPGCVIVKAVPADRANGDVVTVLFQV 726

Query: 152 KINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
             NG          ++                   +       L    K  +  E     
Sbjct: 727 IDNGIGM-DDATRERLFTPFSQGDTSTTRRFGGTGLGLTICRRLVELMKGDITVESQPGK 785

Query: 206 NVVLSALLE 214
                A + 
Sbjct: 786 GSTFKARIP 794


>gi|300937299|ref|ZP_07152140.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
 gi|300457622|gb|EFK21115.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 21-1]
          Length = 450

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGMEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|283850576|ref|ZP_06367864.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283574147|gb|EFC22119.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 642

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 55/240 (22%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +       +    +   + + H+I +P+  I   + L     ++  + + + L+  SA+
Sbjct: 262 RQAREEAEQANRAKSEFLANMSHEIRTPMNGIMGMIHLARLKSVDPAISEYLDLADKSAL 321

Query: 62  IR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
                                +             +         +  + +   V     
Sbjct: 322 HLLGIVNDVLDLSKLEAGKIRLFRKRFSLRKEVEAVVEPFRVAAGKKDLGLAHTVAPDLP 381

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNEN------IFSLKINGNLAR 159
              +  +    ++L NL   A    P G       +  ++         F++   G    
Sbjct: 382 DSIVGDAGRLRQVLTNLVGNALKFTPSGRIDLRVERAGESAAGGPQLFRFTVTDTGIGIP 441

Query: 160 FPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          T          +       L       +     +    V S  L 
Sbjct: 442 AVRFAHIFESFEQAHTSAQALFGGTGLGLTISRQLVELMGGEITVASTEGEGSVFSFTLP 501


>gi|260857511|ref|YP_003231402.1| sensory histidine kinase EnvZ in two-component regulatory system
           with OmpR [Escherichia coli O26:H11 str. 11368]
 gi|257756160|dbj|BAI27662.1| sensory histidine kinase EnvZ in two-component regulatory system
           with OmpR [Escherichia coli O26:H11 str. 11368]
          Length = 450

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + +         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIDVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|322419049|ref|YP_004198272.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
 gi|320125436|gb|ADW12996.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
          Length = 691

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 29/237 (12%)

Query: 7   FNLSSMDLVALLCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSMSAII 62
            +   M+ V  L   I HD  + + A+    +L    LD        ++ I  SS  AI 
Sbjct: 308 LHAQKMEAVGTLAGGIAHDFNNIMTAVIGYTDLLMLQLDPPAPYRGFLESIHSSSHRAIT 367

Query: 63  RLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
            +K +             ++    L ++  +++     + R+ V+ +     +  ++ +I
Sbjct: 368 LVKNLLTFSRQDAPLTAKLEFNALLQNVAGLLKRLAGDEVRLVVNPSSAPQGVLVDQGQI 427

Query: 119 LLNLFM---VAHASLPR---------------GGKVTISVQDSKNENIFSLKINGNLARF 160
              L         ++P                                 S+   G     
Sbjct: 428 EQVLANLTTNGRDAMPHGGRLTIDVEAVELSEHAVSGHDTAKPGPYVKVSVSDTGLGIDE 487

Query: 161 PEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +I D    +        +       +       +            S  L +
Sbjct: 488 AARG-RIFDPFFTTKEVGKGSGLGLSISYGIVKRYGGFIDVTSERGVGTTFSVYLPR 543


>gi|254557184|ref|YP_003063601.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
 gi|254046111|gb|ACT62904.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           JDM1]
          Length = 507

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 16/235 (6%), Positives = 57/235 (24%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +  +               +   H++ +P+  I+  LE L         +   ++L++  
Sbjct: 263 LRTSNEEIKRQEKRRREFMADAAHEMRTPLTTINGILEGLAYDAIPEEDKGHSIELMQNE 322

Query: 57  SMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I  +                        + L  L +           + ++ V   
Sbjct: 323 TKRLIRLVNENLDYEKIRTGQIVLNKTNFDGAEVLHNLVEQLTKKAAAADDEFKLTVPEK 382

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++L N+   A              +      +  ++ +G      +   
Sbjct: 383 LPVWADYDRFVQVLFNIMQNAIQFSQANVIEVTGSRTDHATVVA-IQDHGIGMTPDQVKN 441

Query: 163 KFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +            +       L  ++   +  + +++     +    
Sbjct: 442 IWERYYKADPSRKNTKYGESGLGLAISHQLVQQHGGSIKVDSVENEGTCFTVTFP 496


>gi|229108572|ref|ZP_04238184.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
 gi|228674827|gb|EEL30059.1| hypothetical protein bcere0018_8540 [Bacillus cereus Rock1-15]
          Length = 896

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 61/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E    +   + ++L  +  
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+    
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 722 EGSTFTVYIP 731


>gi|307154730|ref|YP_003890114.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
 gi|306984958|gb|ADN16839.1| integral membrane sensor signal transduction histidine kinase
           [Cyanothece sp. PCC 7822]
          Length = 461

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 63/237 (26%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVAL-----LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQ 51
           +A  +   L  +   A        +   H++ +P+  I   + +              +Q
Sbjct: 223 LAMTLDRMLDRLS-AAFEHERRFTADASHELRTPLAVIKGRIGVTLSQNRTPEEYQATLQ 281

Query: 52  LIRLSSMSAIIRLKFMRL---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
            +       I     +            F      + L  L +  Q++ +   +     +
Sbjct: 282 ALEYEVDRLIRLANGLLFLTRLEQETIQFQQIDLSELLSILVEQFQMMAEPRNILLTDNI 341

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF-- 160
                    +     + LNL   A    P GGKVT+  Q    +    +  +G       
Sbjct: 342 EPELMIAGNADYLTNVFLNLLDNAIKYTPDGGKVTVKAQPQAEQVYIRVSNSGKGIAPEN 401

Query: 161 -PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            P  F +      +         +       +   +K  +  E   +     +  L 
Sbjct: 402 LPHLFKRFYRVEADRSRHTGGTGLGLAIAYEIVRLHKGTITVESEVNQTTTFTVSLP 458


>gi|222526335|ref|YP_002570806.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           sp. Y-400-fl]
 gi|222450214|gb|ACM54480.1| PAS/PAC sensor signal transduction histidine kinase [Chloroflexus
           sp. Y-400-fl]
          Length = 425

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 19/236 (8%), Positives = 56/236 (23%), Gaps = 40/236 (16%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSSMSAIIRLKFMRLAFG-- 72
           L + + H++ +P+ ++   +E +      D    +++ +     +    +  +       
Sbjct: 189 LVANVSHELRTPLASLKLLVETVQSAPPPDIASRMLEQMAQEIDAVTQLVDELHELSRLE 248

Query: 73  ------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI----DLSRERAKILLNL 122
                     +     +    + I       ++V        +           ++LLNL
Sbjct: 249 SGRVSLKLEPLPVWPVIERAVERIRPQADRKQQVICVEPAADLPLALMDGDRIGQVLLNL 308

Query: 123 FMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              A    P                  +  +       +    +  +   G      +  
Sbjct: 309 LHNAVKFTPEGGTITVAAEVLTLRDDEQPSRPDRPPHPAGTWLLIRVSDTGIGIPNRDI- 367

Query: 165 TQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +I +                 +       L   +  R+     + H       L 
Sbjct: 368 QRIFERFYKVDRARTRHAGGTGLGLAIAKHLVEGHGGRIWASSQEGHGSTFWFTLP 423


>gi|183221467|ref|YP_001839463.1| histidine kinase sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911554|ref|YP_001963109.1| two component response regulator sensor protein [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776230|gb|ABZ94531.1| Sensor protein of a two component response regulator [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779889|gb|ABZ98187.1| Histidine kinase sensor protein [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 384

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/230 (9%), Positives = 65/230 (28%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            +   F + ++  + +L S I H++ +P+  I  +L+ L          Q+ +   M   
Sbjct: 146 KEEESFRMRNLASLGILISGIAHELNNPLTGISLTLQNLKANWQNQPPEQIEKRLDMIKN 205

Query: 62  IRLKFMRLAFGYTGSVDSLIG---------------LGDIEQVIEDFIAVDKRVQVSWTG 106
              +   +         +                     I         ++ R+      
Sbjct: 206 DISRAAIIVSDIISFAKTDKVKVTLGDIVETITRAKDTVIRLYPHLSKNINWRITCDHEY 265

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           +      +  ++ +NLF  +  +      +++I ++ +KN     ++ N           
Sbjct: 266 QFPFHPGKMERLFMNLFRNSLQAFDYRPGEISIEIRKTKNWLHIIIEDNAGGIPDSIIQK 325

Query: 166 QIVDGNVESTID-SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +       +       +  E+   +  + ++      +    
Sbjct: 326 IFDPFFTSNKSGTGTGLGLSICHSIVKEHDGNISVKSVEQK-TRFTISFP 374


>gi|149191684|ref|ZP_01869926.1| putative histidine kinase [Vibrio shilonii AK1]
 gi|148834473|gb|EDL51468.1| putative histidine kinase [Vibrio shilonii AK1]
          Length = 1039

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/239 (8%), Positives = 62/239 (25%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
                  + +    +   + + H+I +P+  +    E+L +  +       +     S+ 
Sbjct: 369 EHAKENAIEASKAKSSFLANMSHEIRTPLNGVIGISEVLSDTDLTATQKDYVDTIETSSQ 428

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA------------VDKRVQVSWTGEKI 109
           + L  +     ++     ++ +      I + I                 + V       
Sbjct: 429 LLLSLINDILDFSKIESGMLQINPHSTSIRETIYDIASIVAPKVKEKGIELNVDIDQNVP 488

Query: 110 DL----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE----NIFSLKINGNLARFP 161
                      ++L+N    A     +G          ++      +F ++ +G      
Sbjct: 489 FRVLADDHRMRQVLMNFMSNAVKFTDKGSVTIGVHYQGESNNMASLMFEVQDSGIGI-DK 547

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E+ ++I +                 +       L       +  + +          LE
Sbjct: 548 ERQSKIFEAFAQEDDSTTRQFGGTGLGLAISTQLIELMGGEIQLDSVKGVGSRFYFTLE 606


>gi|94263572|ref|ZP_01287383.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
 gi|93456105|gb|EAT06252.1| PAS:Response regulator receiver [delta proteobacterium MLMS-1]
          Length = 875

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 72/242 (29%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLSSM 58
           +N  F    ++ + +L   I HD  + +  I      +L +          ++ IRL++ 
Sbjct: 488 ENQLFQARKLESIGVLAGGIAHDFNNILTPIIMRSGMALTMAPADSPLHRNLEQIRLAAE 547

Query: 59  SAIIRL----KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKI 109
            A   +    +F R +      +     + +  + +   +  +  ++++           
Sbjct: 548 RAKTLVGQILEFSRQSDHKPRKLALEPVVKETLKFMRSTLPANIALELTGHSGGGQDMVN 607

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK---------------NENIFSLKIN 154
                  ++++NL   A  ++ R G       +                 +    ++  +
Sbjct: 608 ADPTRITQVVMNLVTNAAHAMRRQGGRVTVSLERWSDGGKAPAPGLPADQDYLQLTVSDD 667

Query: 155 GNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G     PE   +I +    +    +   +    V  +       +     +      +  
Sbjct: 668 GEGI-PPEIIPRIFEPYFTTKRRGEGSGMGLAMVHGIVKALGGAITVHSTEGEGTTFNVF 726

Query: 213 LE 214
           L 
Sbjct: 727 LP 728


>gi|2564745|gb|AAB96631.1| histidine kinase sensory protein ExoS [Sinorhizobium meliloti]
          Length = 577

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 75/247 (30%), Gaps = 37/247 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   +++++      + + H++ +P+ ++ +++E L        +  +M +I+   
Sbjct: 330 MTTALYDRIAAIE---NFAADVSHELKNPLTSLRSAVETLPLARNEESKKRLMDVIQHDV 386

Query: 58  MSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104
                 +  +  A              VD    LGD+ ++        K V + +     
Sbjct: 387 RRLDRLISDISDASRLDAELARADAKKVDLEKLLGDLVEISRQIRGSKKPVLLDFVVDRK 446

Query: 105 -----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA 158
                +           +I+ NL   A + +P      +     S+   I  ++ NG   
Sbjct: 447 DNPRASFIVSGYELRIGQIITNLIENARSFVPEQNGRIVVRLTRSRLRCIVYVEDNGPGI 506

Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDH-----NV 207
           +  +   +I +       +         +       +A  +   L  E I          
Sbjct: 507 QAEDI-DRIFERFYTDRPEGEDFGQNSGLGLSISRQIAEAHGGTLRAENIAGKDGRISGA 565

Query: 208 VLSALLE 214
                L 
Sbjct: 566 RFVLSLP 572


>gi|51246735|ref|YP_066619.1| Ntr family two-component system sensory/regulatory protein
           [Desulfotalea psychrophila LSv54]
 gi|50877772|emb|CAG37612.1| related to two-component system sensory/regulatory protein (Ntr
           family) [Desulfotalea psychrophila LSv54]
          Length = 513

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 62/238 (26%), Gaps = 26/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------ 54
           + K +      M+ +  L   + HD  + +  I    E++     ++ ++          
Sbjct: 132 LEKRLRQT-QKMEAIGTLAGGVAHDFNNVLTPILGYSEIIRLRMEQEGLLDSAMDGYLGE 190

Query: 55  ------LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                  +       L F   A            + ++ +++   +    ++ +    + 
Sbjct: 191 ILSAAGRAQKLVEQILTFSCSAEQKISLQYGQPVIKEVSRLMRTMLPATIKINLDLDEDC 250

Query: 109 IDLSRER---AKILLNLFMVAHASLPRGG-------KVTISVQDSKNENIFSLKINGNLA 158
             +S +     +I++NL   +  ++                 +  +      +   G   
Sbjct: 251 GRISIDPVHLQQIIVNLCTNSGHAMEGRHGTLTISLVSEERDEGGEEWLEIIVADTGCGI 310

Query: 159 RFPEKFTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +I +    +        +    V  L H    RL  E              
Sbjct: 311 EDV-LLERIFEPYFTTREKEQGTGMGLAVVHGLVHSYGGRLRVESEIGCGTSFHVSFP 367


>gi|37523667|ref|NP_927044.1| two-component sensor histidine kinase [Gloeobacter violaceus PCC
           7421]
 gi|35214672|dbj|BAC92039.1| gll4098 [Gloeobacter violaceus PCC 7421]
          Length = 449

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/201 (10%), Positives = 53/201 (26%), Gaps = 10/201 (4%)

Query: 24  HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
           H + +P+  I    E L     E    +  ++   +       +             +G 
Sbjct: 247 HQLRNPLALIGLYAENLCLGLEEGSTREQAQIIRETVKELNANLTELVYCGQGARLRMGF 306

Query: 84  GDIEQVI---------EDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGG 134
            D+  ++                +      +        +  ++  NL   A    P GG
Sbjct: 307 QDLRALMAQSVEAIGPWLERKCLRVRYPDSSLLFACDRLQMKQVFDNLLSNAVHFSPEGG 366

Query: 135 KVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENK 194
            +T   +  +NE +  +   G      +    +             +       +  +++
Sbjct: 367 TITCHWRSFQNEVLIEIADQGPGLSAQDL-QHVFTPFYSRRPGGTGLGLAIAKKIVLDHQ 425

Query: 195 IRLLPEIIDDHNVVLSALLEK 215
             L  + +       S  L +
Sbjct: 426 GSLWVQNLPTGGAQFSLGLPR 446


>gi|15963796|ref|NP_384149.1| histidine kinase sensory transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|15072971|emb|CAC41430.1| Signal transduction histidine kinase, regulator of succinoglycan
           synthesis [Sinorhizobium meliloti 1021]
          Length = 595

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 75/247 (30%), Gaps = 37/247 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   +++++      + + H++ +P+ ++ +++E L        +  +M +I+   
Sbjct: 348 MTTALYDRIAAIE---NFAADVSHELKNPLTSLRSAVETLPLARNEESKKRLMDVIQHDV 404

Query: 58  MSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104
                 +  +  A              VD    LGD+ ++        K V + +     
Sbjct: 405 RRLDRLISDISDASRLDAELARADAKKVDLEKLLGDLVEISRQIRGSKKPVLLDFVVDRK 464

Query: 105 -----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA 158
                +           +I+ NL   A + +P      +     S+   I  ++ NG   
Sbjct: 465 DNPRASFIVSGYELRIGQIITNLIENARSFVPEQNGRIVVRLTRSRLRCIVYVEDNGPGI 524

Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDH-----NV 207
           +  +   +I +       +         +       +A  +   L  E I          
Sbjct: 525 QAEDI-DRIFERFYTDRPEGEDFGQNSGLGLSISRQIAEAHGGTLRAENIAGKDGRISGA 583

Query: 208 VLSALLE 214
                L 
Sbjct: 584 RFVLSLP 590


>gi|17380455|sp|P72292|CHVG_RHIME RecName: Full=Sensor protein ChvG; AltName: Full=Histidine kinase
           sensory protein ExoS
          Length = 577

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 75/247 (30%), Gaps = 37/247 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSS 57
           M   +   +++++      + + H++ +P+ ++ +++E L        +  +M +I+   
Sbjct: 330 MTTALYDRIAAIE---NFAADVSHELKNPLTSLRSAVETLPLARNEESKKRLMDVIQHDV 386

Query: 58  MSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW----- 104
                 +  +  A              VD    LGD+ ++        K V + +     
Sbjct: 387 RRLDRLISDISDASRLDAELARADAKKVDLEKLLGDLVEISRQIRGSKKPVLLDFVVDRK 446

Query: 105 -----TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-QDSKNENIFSLKINGNLA 158
                +           +I+ NL   A + +P      +     S+   I  ++ NG   
Sbjct: 447 DNPRASFIVSGYELRIGQIITNLIENARSFVPEQNGRIVVRLTRSRLRCIVYVEDNGPGI 506

Query: 159 RFPEKFTQIVDGNVESTIDS------HDIQFYYVILLAHENKIRLLPEIIDDH-----NV 207
           +  +   +I +       +         +       +A  +   L  E I          
Sbjct: 507 QAEDI-DRIFERFYTDRPEGEDFGQNSGLGLSISRQIAEAHGGTLRAENIAGKDGRISGA 565

Query: 208 VLSALLE 214
                L 
Sbjct: 566 RFVLSLP 572


>gi|28379052|ref|NP_785944.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|300768409|ref|ZP_07078310.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308181245|ref|YP_003925373.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|28271890|emb|CAD64795.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           WCFS1]
 gi|300494024|gb|EFK29191.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308046736|gb|ADN99279.1| histidine protein kinase; sensor protein [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 507

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 16/235 (6%), Positives = 57/235 (24%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +  +               +   H++ +P+  I+  LE L         +   ++L++  
Sbjct: 263 LRTSNEEIKRQEKRRREFMADAAHEMRTPLTTINGILEGLAYDAIPEEDKGHSIELMQNE 322

Query: 57  SMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I  +                        + L  L +           + ++ V   
Sbjct: 323 TKRLIRLVNENLDYEKIRTGQIALNKTNFDGAEVLHNLVEQLTKKAAAADDEFKLTVPEK 382

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++L N+   A              +      +  ++ +G      +   
Sbjct: 383 LPVWADYDRFVQVLFNIMQNAIQFSQANVIEVTGSRTDHATVVA-IQDHGIGMTPDQVKN 441

Query: 163 KFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    +            +       L  ++   +  + +++     +    
Sbjct: 442 IWERYYKADPSRKNTKYGESGLGLAISHQLVQQHGGSIKVDSVENEGTCFTVTFP 496


>gi|187732356|ref|YP_001879306.1| sensor protein KdpD [Shigella boydii CDC 3083-94]
 gi|187429348|gb|ACD08622.1| sensor protein KdpD [Shigella boydii CDC 3083-94]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|329998865|ref|ZP_08303233.1| histidine kinase KdpD [Klebsiella sp. MS 92-3]
 gi|328538537|gb|EGF64646.1| histidine kinase KdpD [Klebsiella sp. MS 92-3]
          Length = 895

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +          L   L + + HD+ +P+  +    E+L               +E+ Q 
Sbjct: 651 EEQARLTSERESLRNSLLAALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQANEIRQH 710

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKI 109
           +  ++      L   R+  G        + L ++       +      + +Q+       
Sbjct: 711 VLNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALRMLEPSLGGQHIQLDLPDPLQ 770

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +  +     ++L+NL   AH        + I  +    +    +  NG      +    
Sbjct: 771 LVHVDGPLFERVLINLLENAHKYAGSRASIGIRAEADARQLSLEVWDNGPGIPAGQEQTI 830

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +   +      +        L 
Sbjct: 831 FDKFARGNKESAIPGVGLGLAICQAIVDVHGGTISASNRPEGGASFRVTLP 881


>gi|313672986|ref|YP_004051097.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939742|gb|ADR18934.1| multi-sensor hybrid histidine kinase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1095

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK      +     +   + + H+I +P+  I    +LL    +   V++ ++  +M++ 
Sbjct: 392 AKENAERANQAK--STFLANMSHEIRTPLNGIIGIAQLLKNENLPKHVVEYVKHLNMASH 449

Query: 62  IRLKFMRLAFGYTGSV--------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
             L  +   F ++           D       I +V++      K   +  T     L  
Sbjct: 450 HLLDLINDIFDFSRIESGEMKIINDIFSLKDTINEVVKVLYYRAKEKNIELTVFVDPLIP 509

Query: 114 --------ERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFP 161
                      +IL NL   A      G         +  +   + +F +K  G      
Sbjct: 510 SKIIGDSLRVKQILTNLLGNAIKFTEVGYVSLDVFIKNSTEKSVDILFVIKDTGIGI-SG 568

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +K  ++                   +    V  L       +               L+
Sbjct: 569 DKKQKLFTPFFQGDQSVTKKYGGTGLGLTIVKRLIDAMNGDINFISEPGKGTTFYVTLK 627


>gi|311694984|gb|ADP97857.1| signal transduction histidine kinase [marine bacterium HP15]
          Length = 775

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 19/217 (8%), Positives = 51/217 (23%), Gaps = 24/217 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYT----- 74
           + + H+I +P+  +   L L  E  ++      I ++  +    L  +      +     
Sbjct: 297 ASMSHEIRTPLNGVLGMLGLALEGELDSAQRNRIEIALNAGESLLGLLNDILDISKVEAG 356

Query: 75  ------GSVDSLIGLGDIEQVIEDFIAVDK-----RVQVSWTGEKIDLSRERAKILLNLF 123
                         + +   +        +      +      + +       ++L NL 
Sbjct: 357 KLSLENIPFSVRHLIEECATLHAQQARRKRIHLVTEIDPDLPEDFLGDPTRVRQVLNNLL 416

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN------VESTID 177
             A      G     +     +     +   G      E   +I                
Sbjct: 417 SNAIKFTDEGSVKLKAAYSGGS-LRIDVVDTGIGM-STEGLHRIFSPFSQADAETTRLYG 474

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +       L      ++L +  +      +  L 
Sbjct: 475 GTGLGLTLCRQLVERMHGQILVDSREGSGTHFTVTLP 511


>gi|307726047|ref|YP_003909260.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
 gi|307586572|gb|ADN59969.1| PAS/PAC sensor hybrid histidine kinase [Burkholderia sp. CCGE1003]
          Length = 817

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 67/245 (27%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV----MQLIR 54
           + +     + S  + A+  L   + HD  + +  +  +LELL+     D      +    
Sbjct: 263 LEETRVALVQSQKMEAIGKLTGGVAHDFNNVMQILRGNLELLESRHKRDGWTRERLDKAI 322

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-------GE 107
            +          +            +I L    + ++D +       V            
Sbjct: 323 DAVERGAKLASQLLAFGRQQPLRPLVINLASAIRGMDDLLRRALGETVQIETVVAGGLWN 382

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI---------------SVQDSKNENIFSLK 152
                 +   ++LNL + A  ++  GGK+T+                        + ++ 
Sbjct: 383 TFVDVHQMENVVLNLAINARDAMNEGGKLTMEVSNAMLDDQYVVGFPDVPPGQYVMLAVT 442

Query: 153 INGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G     PE   +  D    +  +     +          ++   +       H   + 
Sbjct: 443 DTGTGM-PPEVVQRAFDPFFTTKPEGQGTGLGLSMAYGFVKQSGGHIRIYSEVGHGTTVK 501

Query: 211 ALLEK 215
             L +
Sbjct: 502 IYLPR 506


>gi|260752410|ref|YP_003225303.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
 gi|258551773|gb|ACV74719.1| histidine kinase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 421

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 17/221 (7%), Positives = 60/221 (27%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAIIRLKFMRL-- 69
             +   H++ +P+  +   +E L++             + ++   +      +  +    
Sbjct: 194 FVANTSHELRTPLATLSGFIETLEDDDVIKERDTRHHFLSIMAREAKRMQNLVDDLMSLS 253

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS-WTGEKIDLSRERAKIL 119
                              +  +    Q      A    ++   ++        E  ++L
Sbjct: 254 RIEAGKFSLPHDIVHMSPVVEEVVSNIQASGQAKAAQITLENHLFSDSLQGDRAELTQLL 313

Query: 120 LNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVEST 175
            N+   A     + G + ++      +    ++   G+   F        +    +   +
Sbjct: 314 YNIIGNALKYGRKDGIIKVALDNTDDHRIKLAIADEGDGIPFHHIPRLTERFYRVDNSRS 373

Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    V  +   ++  LL + +      ++  L 
Sbjct: 374 RALGGTGLGLAIVKQIVEHHRGELLIDSLPGKGTTVTVFLP 414


>gi|229131507|ref|ZP_04260398.1| hypothetical protein bcere0014_4730 [Bacillus cereus BDRD-ST196]
 gi|228651954|gb|EEL07900.1| hypothetical protein bcere0014_4730 [Bacillus cereus BDRD-ST196]
          Length = 328

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 61/219 (27%), Gaps = 20/219 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRLSSMSAIIRLKFM---- 67
              S   H++ +P+  I +  ++L +        +   +  I          +  +    
Sbjct: 106 QFVSDASHELRTPLAVIQSKTDVLFQSPSATIEEKAVDISTISKECRRLSKLVSNLLLLA 165

Query: 68  -------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                   +          L  + +  + I  +      ++V      +       ++++
Sbjct: 166 RSDSNQIEMDKKTFELDKLLEEIINPYKEIASYQEKAMILKVERDITFMGDRERIHQMMV 225

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-I 176
            L   A       G + I    + N     +K NG   +  +    F +   G+   +  
Sbjct: 226 ILLDNAMKYTNEDGHIQIDCTQTSNSICIRVKDNGIGVKEEDIPNLFDRFYQGDKARSMS 285

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +   +       +  ++  ++  E           +  K
Sbjct: 286 EGAGLGLSIANWIVEKHYGKISVESKWGEGTCFEVIFPK 324


>gi|259907954|ref|YP_002648310.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Erwinia pyrifoliae Ep1/96]
 gi|224963576|emb|CAX55066.1| Sensor kinase protein RcsC [Erwinia pyrifoliae Ep1/96]
 gi|283477834|emb|CAY73750.1| Two component sensor kinase/response regulator protein RcsC
           [Erwinia pyrifoliae DSM 12163]
          Length = 992

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/240 (9%), Positives = 65/240 (27%), Gaps = 28/240 (11%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++       +  +    +  + + H++ +P+  I  +L+LL    +      L+   
Sbjct: 494 MEQSLHEIAQEAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLKTKALPAGADSLVTAM 553

Query: 57  SMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
           + S+ +                    +         V + I    +  V++  + +   +
Sbjct: 554 NNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVIAHITANYLAMVVKKRLTLWCFI 613

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                           +++ NL   A       G + +      +   F ++ +G     
Sbjct: 614 DSDVPVALDGDPMRLQQVISNLLNNAIKFT-HTGGIILQAYVKGDYLAFRVRDSGVGIPA 672

Query: 161 PEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E   ++ D   +             +       L +     +  E            + 
Sbjct: 673 KEIT-RLFDPFFQVGSGVQRHFQGTGLGLAICEKLMNMMDGDIEVESEPGMGSQFIVRIP 731


>gi|255690406|ref|ZP_05414081.1| tetracycline resistance element regulator RteA [Bacteroides
           finegoldii DSM 17565]
 gi|260624088|gb|EEX46959.1| tetracycline resistance element regulator RteA [Bacteroides
           finegoldii DSM 17565]
          Length = 781

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 300 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 359

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++               
Sbjct: 360 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDKERII 419

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 420 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 478

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 479 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 519


>gi|222055407|ref|YP_002537769.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
 gi|221564696|gb|ACM20668.1| PAS/PAC sensor signal transduction histidine kinase [Geobacter sp.
           FRC-32]
          Length = 746

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 20/230 (8%)

Query: 4   NICFNLSSMDLVA--LLCSRICHDIISPIGAIHNSLELLD---------EVGIEDEVMQL 52
           ++   + +  + A   +  RI H+I +P+  I  S + L          E  + DE   +
Sbjct: 512 DLTQLIKAQRMAAWREVARRIAHEIKNPLTPIKLSAQRLRKRYLSKFEGEEKVFDECTDM 571

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI---AVDKRVQVSWTGEKI 109
           I  S       +           +  S   L +I             +    +       
Sbjct: 572 IIKSVDELKTLVDEFSNFARMPAAQPSPNNLNEILHEAITLYQEAHRNITFSLRTDENIP 631

Query: 110 DLSRERAKILLNLFMVAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  +R +I   L  +   ++          +  +         F++   G+    PE  
Sbjct: 632 MIQLDRDQIKRVLINLLDNAVAAIDGNGAIIIESTYNRELKMVTFTVADTGHGI-LPEDR 690

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            ++ +    +      +    V  +  ++   +  +       + +  L 
Sbjct: 691 ARLFEPYFSTKKAGTGLGLAIVNTIISDHHGFIRTKDNQPKGTIFTIELP 740


>gi|218887461|ref|YP_002436782.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
 gi|218758415|gb|ACL09314.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
            'Miyazaki F']
          Length = 1499

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 57/249 (22%), Gaps = 35/249 (14%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHN----SLELLDEVGIEDEVMQLIRLS 56
            + +      S+ +L +   + I H++ +P+  I      +L  L++  +     +     
Sbjct: 1044 LQRAKEEAESANELKSQFVANISHEMRTPLSGILGIVDVALSRLNDTALPAHDNEQGHYL 1103

Query: 57   SMSAI----------IRLKFMRLAFGYTGSVDSLIGLGDIE---------QVIEDFIAVD 97
            SM               L F R+  G  G       L             Q     +++ 
Sbjct: 1104 SMIRNVSEGLLHVINDLLDFSRMEAGRLGLDQVEYDLRAAVSDALAPLAVQAERKGLSLT 1163

Query: 98   KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI-------SVQDSKNENIFS 150
              +                +IL+NL   A                             F+
Sbjct: 1164 VHIDADVPARLQGDPLRLRQILVNLAGNAVKFTDTDTGSVHVDVRRSAQCPRPGGCLRFT 1223

Query: 151  LKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDH 205
            ++  G      +           DG+         +       +       +        
Sbjct: 1224 VQDTGPGITADKLPLLFESFSQADGSHTRRHSGSGLGLAISRHIVRLQGGDIGVNSTPGQ 1283

Query: 206  NVVLSALLE 214
                   L 
Sbjct: 1284 GSRFWFTLP 1292


>gi|206562095|ref|YP_002232858.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
 gi|198038135|emb|CAR54085.1| hybrid two-component system kinase-response regulator protein
           [Burkholderia cenocepacia J2315]
          Length = 1011

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 47/220 (21%), Gaps = 25/220 (11%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR-----------LKFMR 68
           + + H+I +P+ AI  +LEL+    +     + ++    ++ +                 
Sbjct: 535 ATMSHEIRTPLNAILGNLELIGREPLAATQRERLQTVEGASSVLLDLINDILDLSKIEAG 594

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAV-----DKRVQVSWTGEKIDLSRERAKILLNLF 123
                    D    +     + E          D  V  +     +       +I  NL 
Sbjct: 595 QMTIEAIPFDLAETIRQTGAMFEPLATAKGLQFDVFVDDALPARYLGDPTRIRQIAANLV 654

Query: 124 MVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARFPEKFTQIVD-----GNVES 174
             A      G                     +   G      ++            ++  
Sbjct: 655 GNAIKFTNHGEITLEVYLRDDTDPASPIAIGVSDTGIGMTDAQRAALFRPFTQADTSITR 714

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       L       +  +            L 
Sbjct: 715 RYGGTGLGLALTKQLTQMMHGTVDVKSEPGKGSTFVVTLP 754


>gi|171696068|ref|XP_001912958.1| hypothetical protein [Podospora anserina S mat+]
 gi|170948276|emb|CAP60440.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1321

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 63/248 (25%), Gaps = 37/248 (14%)

Query: 1   MAKNICFNLSSMDLVALLC--------SRICHDIISPIGAIHNSLELLDEVGIEDEVMQL 52
           +  +I  N  + +  A L         + + H+I +P+  I    +L  +  +     ++
Sbjct: 684 LRDSIQRNTQARE-AAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTQYQREM 742

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------------- 97
           + + +  A   L  +      +      + + +I   +   +                  
Sbjct: 743 LNIVNSLANSLLTIIDDILDLSKIEARRMVIEEIPYTLRGTVFNALKTLAVKANEKFLDL 802

Query: 98  -KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIF 149
             RV  S     +  S    +I+LNL   A                  +     +    F
Sbjct: 803 TYRVNNSVPDHVVGDSFRLRQIILNLVGNAIKFTEHGEVSLTIQKASHVQCAPYEYAIEF 862

Query: 150 SLKINGNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
            +   G               Q  DG++        +       L +     +  +    
Sbjct: 863 IVSDTGIGIPADKLDLIFDTFQQADGSMTRKFGGTGLGLSISKRLVNLMGGDVWVKSEYG 922

Query: 205 HNVVLSAL 212
                   
Sbjct: 923 KGSKFYFT 930


>gi|170727319|ref|YP_001761345.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
 gi|169812666|gb|ACA87250.1| multi-sensor hybrid histidine kinase [Shewanella woodyi ATCC 51908]
          Length = 1340

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 65/246 (26%), Gaps = 35/246 (14%)

Query: 2   AKNICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI 53
            K +   L      A           + + H+I +P+ AI     L     +  +    +
Sbjct: 580 RKQMEVELRKAKEAADEVSKAKGDFLANMSHEIRTPMNAIIGMSHLALNADLNPKQRGYV 639

Query: 54  RLSSM-------SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD--------- 97
               M            L F ++  G   + D    L ++   + + IAV          
Sbjct: 640 SKIDMAAKSLLGIINDILDFSKMEAGKLVTEDVDFRLDEVLDNLTNIIAVKAEEKGLEFL 699

Query: 98  KRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTI----SVQDSKNENIFSLKI 153
             +        +       ++L+NL   A      G  V      +  +      F+++ 
Sbjct: 700 FDIDPHIPLALVGDPLRIGQVLINLCGNAIKFTDSGEVVVGVKLLNKSEDGLNLQFNVRD 759

Query: 154 NGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNV 207
           +G      E+  ++          +        +       L      ++     +    
Sbjct: 760 SGIGL-SQEQQDKLFKSFSQADASITRKYGGTGLGLTISKRLVEIMGGKIWVTSDEGQGS 818

Query: 208 VLSALL 213
             S  L
Sbjct: 819 TFSFTL 824


>gi|19551648|ref|NP_599650.1| signal transduction histidine kinase [Corynebacterium glutamicum
           ATCC 13032]
          Length = 386

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 59/232 (25%), Gaps = 22/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++    + S        + + H++ +P+G +    E L E   + E ++           
Sbjct: 120 ESENVRMESAR--RDFVANVSHELKTPVGGMALLAEALMESSDDPEQVEYFGSRLHREAH 177

Query: 63  RLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           R+  M                     V +   + +  +  +          +      + 
Sbjct: 178 RMADMINELISLSKLQGAERLPDMEPVQADDIISEAIERTQLAADNANIEIIRGDRTGVW 237

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R+ ++  L      A    P+   V++S     +  +  +   G      ++    
Sbjct: 238 VEADRSLLVTALANLISNAINYSPKSVPVSVSQSIRNDVVMIRVTDRGIGIAPEDQGRVF 297

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +    V  +   +   +            +  L 
Sbjct: 298 ERFFRVDKARSRQTGGTGLGLAIVKHVMANHGGSISLWSRPGTGSTFTLELP 349


>gi|39933434|ref|NP_945710.1| periplasmic sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris CGA009]
 gi|192288791|ref|YP_001989396.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
 gi|39647280|emb|CAE25801.1| two component sensor histidine kinase [Rhodopseudomonas palustris
           CGA009]
 gi|192282540|gb|ACE98920.1| integral membrane sensor signal transduction histidine kinase
           [Rhodopseudomonas palustris TIE-1]
          Length = 581

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/246 (8%), Positives = 61/246 (24%), Gaps = 35/246 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  ++   + +++      + + H++ +P+ ++ +++E L     ++   +L+ +     
Sbjct: 337 MTDSLYNRIEAIE---RFAADVSHELKNPLTSLRSAVETLPLAKTDNSRARLLSVIEHDV 393

Query: 61  IIR------------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
                                 +               +   +        + V      
Sbjct: 394 KRLDRLISDISDASRLDAELQRQDAAQVDLRRLLTTLTLVANETRLGHNALVEVKFDGPA 453

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
           +             +++ NL   A +    GGKV I  +  K E    ++  G   R   
Sbjct: 454 ADQFPVPGHDSRLGQVISNLLSNAQSFSREGGKVRILCRRRKAEIEIIVEDEGPGIRDDA 513

Query: 163 KFTQIVDGNVESTIDS----HDIQFYYVILLAHENKIRLLPEIIDD----------HNVV 208
                     +           +       +   +  ++  E                  
Sbjct: 514 LEKIFERFYTDRPHQGFGQNSGLGLSISKQIVEAHGGKIWAENRVGPRGEDGEPTIAGAR 573

Query: 209 LSALLE 214
               L 
Sbjct: 574 FIVRLP 579


>gi|315292071|gb|EFU51423.1| histidine kinase KdpD [Escherichia coli MS 153-1]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I+           +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGINAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|215433449|gb|ACJ66690.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
          Length = 1358

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 66/247 (26%), Gaps = 35/247 (14%)

Query: 1    MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIE------------ 46
            + +     + +  L A+  L + + H+I +P+  I ++LE   +                
Sbjct: 829  LRQAQAQLVQTGRLAAVGQLAAGVGHEINNPLAYIVSNLEHASDEADALARELDGTRDDV 888

Query: 47   -----------DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIA 95
                        E +               F R      G V     L    ++    + 
Sbjct: 889  GARLKDVNQALREALLGADRVRRIVQDLKMFSRPDDEKQGPVALHAVLDSAVKIAMGELR 948

Query: 96   VDKRVQVSWTGEKIDLSR--ERAKILLNLFMVAHASLPRGGKVTISVQ-----DSKNENI 148
               ++   +             A++ LNL + A  +LP G   +  V+           +
Sbjct: 949  PRAKLVRDYGDVPRVEGNEARLAQVFLNLLINAAQALPEGHAESNEVRLVTRLGPDGRVV 1008

Query: 149  FSLKINGNLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHN 206
              ++  G+    PE   +I D    +        +               +  +      
Sbjct: 1009 AEVRDTGSGI-SPELLGRIFDPFYTTKPVGVGTGLGLSLCHAYLTAMGGTIAVDSEAGRG 1067

Query: 207  VVLSALL 213
             V    L
Sbjct: 1068 SVFRVTL 1074


>gi|220920179|ref|YP_002495480.1| histidine kinase [Methylobacterium nodulans ORS 2060]
 gi|219944785|gb|ACL55177.1| histidine kinase [Methylobacterium nodulans ORS 2060]
          Length = 630

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 19/224 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIEDEVM------QLIRLSS 57
            +  L AL    + + H+I  P+ AI +  +    L+    IED         +L    +
Sbjct: 400 QAGRLAALGQFAASMAHEINQPLAAIRSYADNAAILIRRGRIEDASENFSAIGRLTERIA 459

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSR 113
                   F R A G    V     L +  +V+E   A         +       +    
Sbjct: 460 GLTRQLKGFARRASGRREPVSLAGVLRNALEVVEARAATGGVTLAVDRPEPDLIVLGDGA 519

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARFPEKFTQIVDGN 171
              ++++NL   A  ++       ++V+ +   +  +  +  NG          Q+ D  
Sbjct: 520 RLEQVVVNLLQNALDAVAGRPDPRVTVRAAALGDRALLEVGDNGPGIPDS-VRAQVFDPF 578

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             +  +   +       +  E    L     +    V    L +
Sbjct: 579 FTTKAEGLGLGLAISRGIVEECGGTLAVATGEAGGAVFRVDLAR 622


>gi|156741486|ref|YP_001431615.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
 gi|156232814|gb|ABU57597.1| integral membrane sensor signal transduction histidine kinase
           [Roseiflexus castenholzii DSM 13941]
          Length = 483

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/233 (9%), Positives = 54/233 (23%), Gaps = 28/233 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLSSMSAIIRLKFM 67
            +      L + I H++ +P+  I  +L  L +    +E + +  I   ++     +  +
Sbjct: 234 EAEQARRRLLADIAHELRTPLSVIQGNLRALLDDVFPLEKDEIATIYDETLLLSRLVADL 293

Query: 68  R--------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS----RER 115
           R                VD    +     +        +    +     +          
Sbjct: 294 RELTLAEAGQLRLDLAPVDVAGVVAQSMALFTAQALEKQVTLHTECEPDLPPVLADADRI 353

Query: 116 AKILLNLFMVAHASLPR---------GGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
           A+ L NL   A    P            + ++      +     +   G      +    
Sbjct: 354 AQALNNLLSNALRYTPEGGTVRIIASRARQSVCTVPETDMICIRVIDTGPGIPAADLPRV 413

Query: 164 FTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +                +       L   +   +  E            L 
Sbjct: 414 FDRFWRADRGRARAHGGTGLGLAIARQLVLAHGGAMGVESEPGKGACFWFTLP 466


>gi|113955213|ref|YP_730218.1| adaptive-response sensory kinase [Synechococcus sp. CC9311]
 gi|123132632|sp|Q0IBF4|SASA_SYNS3 RecName: Full=Adaptive-response sensory-kinase sasA; AltName:
           Full=Synechococcus adaptive sensor protein A
 gi|113882564|gb|ABI47522.1| adaptive-response sensory histidine kinase SasA [Synechococcus sp.
           CC9311]
          Length = 383

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/231 (9%), Positives = 66/231 (28%), Gaps = 17/231 (7%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV------MQLIR 54
           + +     +  +     L   + H++ +P+ A   +++  +   I+          +L  
Sbjct: 132 LRQENETLIDRLQAQERLLRMVAHELRTPLTAATLAVQSQELGQIDIHRFRDVLKRRLEE 191

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSL---IGLGDIEQVIEDFIAVDKRVQVSWT---GEK 108
           ++ +S  +                     +    I ++ + ++  D  +         + 
Sbjct: 192 IALLSKDLLEVGSTRWEALFNPQRLDLTSVAAEAILELEKLWLGRDVTIHTDIPADLPKV 251

Query: 109 IDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFPEKF--- 164
               R   ++LLNL   A    P GG      +  +      S+  +G      E+    
Sbjct: 252 FADQRRMRQVLLNLLENALKYTPNGGLISLTMLHRTSQWVQVSISDSGPGIPEEEQQRIF 311

Query: 165 -TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++      +      +       +   +  R+      +     +  + 
Sbjct: 312 LDRVRLPQTSAGASGFGVGLSVCRRIVEVHGGRIWVISEPEKGACFTFNVP 362


>gi|29142581|ref|NP_805923.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|213163186|ref|ZP_03348896.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhi str. E00-7866]
 gi|213612683|ref|ZP_03370509.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
 gi|213865093|ref|ZP_03387212.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
 gi|29138212|gb|AAO69783.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      N     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDNRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|283836244|ref|ZP_06355985.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
 gi|291067608|gb|EFE05717.1| sensor histidine kinase/response regulator [Citrobacter youngae
           ATCC 29220]
          Length = 778

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 57/215 (26%), Gaps = 22/215 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  +  E  + ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+A  + +                 +    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKVITDGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI------D 177
             A    P+G     +  D  N   F ++ +G      E+                    
Sbjct: 408 SNAVKFTPQGQVTVRARYDQGNMLHFEVEDSGIGIPQDEQDKIFAMYYQVKDSNGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              I       LA      +          + +  
Sbjct: 468 GTGIGLAVSKRLAKNMGGDITVSSQAGKGSIFTLT 502


>gi|260460265|ref|ZP_05808517.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
 gi|259033910|gb|EEW35169.1| PAS/PAC sensor signal transduction histidine kinase [Mesorhizobium
            opportunistum WSM2075]
          Length = 1265

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 63/240 (26%), Gaps = 30/240 (12%)

Query: 2    AKNICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQL 52
                   L+   L         A L + I H++  P+ A+  +          E   ++ 
Sbjct: 1022 RAQEELRLAQERLARASQAASLAELSASIAHEVNQPLAAVVANSYACQRWLTAEPPNIER 1081

Query: 53   IRLSSMSAII--------------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK 98
             + +    I                 K    A  YT     +    D+         V  
Sbjct: 1082 AQKTVERIIRDANSAADVVSRIRALFKQSADAMAYTALDSVIAEARDLIAEEAVRRRVRL 1141

Query: 99   RVQVSWTGEKID-LSRERAKILLNLFMVAHASLPRGGKVTI---SVQDSKNENIFSLKIN 154
             + V      +     +  ++L+NL      ++       +    V+   +     +   
Sbjct: 1142 DLDVESDLPIVALDRVQIQQVLVNLIRNGIEAMDSVPGDKVLGLRVRRIGDAIQIEISDC 1201

Query: 155  GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            G    FP+   +I +    +      +       +   +  RL  E  D H       + 
Sbjct: 1202 GPGIAFPD---RIFEPFFTTKEHGMGMGLAICRSIVESHGGRLWVEKNDPHGTAFVFTMP 1258


>gi|239626587|ref|ZP_04669618.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239516733|gb|EEQ56599.1| integral membrane sensor signal transduction histidine kinase
           [Clostridiales bacterium 1_7_47FAA]
          Length = 497

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 75/239 (31%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVM 50
           M++N+   LS ++    +     S   H++ +PI +I    ELL+      E    D   
Sbjct: 254 MSQNVKEYLSQIEKEKQIRQEFFSNASHELKTPITSIQGYAELLESGLIQDESMKMDFAR 313

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLI------GLGDIEQVIEDFIAVDKRVQVSW 104
           ++ + +     +    + ++       + ++       L +         A   +V +  
Sbjct: 314 RIKKEAVNMTGLINDILMISKLEAKDAEVVVTDVRISVLLEEIMDSLKPQAASSQVFLHA 373

Query: 105 TGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
             + + +     ++   L      A      GG+V I++++     +  ++ NG      
Sbjct: 374 DCQPLCIRANVQQMKELLTNLLSNAVKYNHPGGQVWINIREQGGNMVIRVRDNGMGI-PE 432

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +    V  + +  +  +      +        + 
Sbjct: 433 ESLDRIFERFYRVDKGRSRKQGGTGLGLSIVKHIVNFYQGTIHVTSKLEQGTEFVVTIP 491


>gi|254417704|ref|ZP_05031428.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196183881|gb|EDX78857.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 505

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/234 (9%), Positives = 64/234 (27%), Gaps = 21/234 (8%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAI----HNSLELLDEVGIEDEVMQ--- 51
           + +     +    L A+  + S + H++  P+ A+    + S  LLD   +  EV++   
Sbjct: 259 LQELQTELIHISRLTAMGEMASALAHELNQPLTAMANYLNGSARLLDREELPREVLKDAL 318

Query: 52  -----LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWT 105
                    +         F+               + +   +          RV + + 
Sbjct: 319 RKAGAQALRAGDIIRRLRDFVARGEVERRVESLPKLIEEAGALALVGAKEHGVRVTLDFP 378

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARF 160
            +   +  +R +I   +  +   ++                   +E   ++   G+    
Sbjct: 379 PDVDLVLADRVQIQQVVLNLIRNAIEAMEDQPRRDLTISLTRCADEACVTVADTGSGLDP 438

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    V +      +       +   +  R+      +     +  L+
Sbjct: 439 S-VADMLFQPFVTTKRTGMGVGLSICRTIVEAHGGRIWATPRPEGGAQFAFTLK 491


>gi|118466581|ref|YP_879594.1| sensor histidine kinase [Mycobacterium avium 104]
 gi|118167868|gb|ABK68765.1| sensor histidine kinase [Mycobacterium avium 104]
          Length = 496

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 56/216 (25%), Gaps = 19/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
              +   H++ +P+ AI    EL     D+     + M  +   +      ++ + L   
Sbjct: 272 QFVADASHELRTPLAAIRGYTELTQRMGDDREAVAQAMSRVASETERMTRLVEDLLLLAR 331

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---------ERAKILLNLF 123
                       D+ ++  D +            E                  ++L NL 
Sbjct: 332 LDSGRPLEREPVDLSRLAVDAVNDAHVAGPDHQWELDLPEEPVVITGDAARLHQVLTNLL 391

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDS-- 178
             A      G  VT  +       +  +  NG         E F +   G+   +     
Sbjct: 392 ANARVHTGAGTVVTTRLSTEPAHTVLQVIDNGPGIPAELQSEVFERFARGDSSRSRKGGS 451

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   +   +       H    +  L 
Sbjct: 452 TGLGLAIVSAVVKAHNGTISVNSSPGH-TEFTVRLP 486


>gi|110835121|ref|YP_693980.1| sensory box histidine kinase NtrB [Alcanivorax borkumensis SK2]
 gi|110648232|emb|CAL17708.1| sensory box histidine kinase NtrB [Alcanivorax borkumensis SK2]
          Length = 367

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 64/219 (29%), Gaps = 24/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS- 76
           L   + H+I +P+G I  + +LL+      ++ +  R+    A           G     
Sbjct: 141 LVRGVAHEIKNPLGGIRGAAQLLERALPSPDLTEYTRVIIDEADRLRSVADRMLGPRKPP 200

Query: 77  ----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS--- 129
               V+    L  + Q++         +   +     D+  +R +++  L  +   +   
Sbjct: 201 EFRAVNVHECLEHVRQLLLAEYPKGIAIWRDYDISLPDVIADRDQLIQVLLNLIRNASQA 260

Query: 130 --------------LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
                              + TI  Q  +      +  NG      E    +    V   
Sbjct: 261 LLESQTPEPRITMRTRVLRQFTIGAQRHRLVLRMDIIDNGPGI-TEEVQETMFYPMVSGR 319

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +   +       +  +++  +  E       V S LL 
Sbjct: 320 ANGTGLGLSIAQSIISQHQGLIECESQPGQ-TVFSILLP 357


>gi|94264255|ref|ZP_01288049.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
 gi|93455300|gb|EAT05507.1| PAS:ATP-binding region, ATPase-like:Histidine kinase A-like [delta
           proteobacterium MLMS-1]
          Length = 710

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 63/233 (27%), Gaps = 23/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRLSS 57
                 S+ +L       + HD+  P+  I+  + LL+            E+M      +
Sbjct: 470 EAELRRSNAELE-QFAYVVSHDLRQPLRMINGYMGLLERALNDKLDDETREMMDFAAGGA 528

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---- 113
                 L  +          + +  L   E V E    ++  +  +    ++        
Sbjct: 529 RRMDQMLVSLLEYSRVGRKGEPMAPLASREAVTEALHFLEPEINQTDAKVRLSGQWPEIV 588

Query: 114 ----ERAKILLNLFMVAHASLPRGGKVTISVQDSK--NENIFSLKINGNLARFPEKFTQI 167
               E  ++  NL   A        K  I +      N   F++  NG      + F ++
Sbjct: 589 ASRDEFTRLWQNLIGNALKYRDPQRKPQIEISVFPEANGWRFTVTDNGIGIDPGQ-FDRL 647

Query: 168 VDGNVE----STIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215
                        +   I       +   +  R+  E    D        L +
Sbjct: 648 FKVFQRLHPKDQYEGTGIGLAVARKIVERHGGRIWVESEGADQGCRFIFTLPR 700


>gi|90021885|ref|YP_527712.1| sensor/response regulator hybrid [Saccharophagus degradans 2-40]
 gi|89951485|gb|ABD81500.1| ATP-binding region, ATPase-like protein [Saccharophagus degradans
           2-40]
          Length = 942

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 67/252 (26%), Gaps = 41/252 (16%)

Query: 1   MAKNIC-FNLSSMDL-----VALLCSRI--------CHDIISPIGAIHNSLELLDEVGIE 46
           + + +    + +++L      AL  SR+         H+I +P+  I    ELL +  + 
Sbjct: 244 LRETLETVEIQNIELDIARKSALQASRVKSEFLANTSHEIRTPLNGILGFSELLRKTELN 303

Query: 47  DEVMQLIRLSSMSAIIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIA 95
           ++ +  +     SA   L  +     ++             V     + D  ++      
Sbjct: 304 NQQVDYLTTIEESAKGLLTIINDILDFSRLEIGTLTLEYKPVKIRQLIEDTLKLQTPAAN 363

Query: 96  VDKRVQVSWTGEKID-----LSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNE 146
                 ++     +            ++L NL   A      G    G       +++  
Sbjct: 364 EKNIRMLTIIDHDVPENLLGDPLRLKQVLSNLVSNAIKFTDVGYILLGVSKDQSSENQFT 423

Query: 147 NIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPE 200
             F +  +G      ++  ++ D                 +       L       +  E
Sbjct: 424 LKFRVTDSGIGL-SQDQQERLFDPFTQLDSSESRLHGGTGLGLAIAKGLVDRMNGTIGVE 482

Query: 201 IIDDHNVVLSAL 212
                       
Sbjct: 483 STLGKGATFWFT 494


>gi|319405334|emb|CBI78952.1| two-component sensor histidine kinase [Bartonella sp. AR 15-3]
          Length = 769

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 63/238 (26%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLS 56
           + +      S+    +   + I H++ +P+ AI    E++ +            + +   
Sbjct: 529 LQEEKERAESANKAKSEFLANISHELRTPLNAILGFSEIMLQSTFGPLGSQRYKEYVHDI 588

Query: 57  SMSAIIRLKFMRLAFGYT--------------GSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             S    L  +      +                   +               +     +
Sbjct: 589 HNSGTHLLTLINDILDMSKIEAGRFTLDRKNINLEPIISETIRTLTPQAQAKKISLTTNI 648

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                     R   +I LNL   A    P GG + I      N  IFS+K  G      E
Sbjct: 649 EQKLHANVDCRAMKQIFLNLISNAVKFTPSGGSIDIRAFQKNNNLIFSIKDTGVGI-PQE 707

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++             T     +       L   +K +L     +    +++ ++ 
Sbjct: 708 AIKKLGQPFEQVENQFTKTHPGSGLGLAISRSLLELHKGKLEITSKEAKGTIVTIIMP 765


>gi|303257820|ref|ZP_07343830.1| putative sensor histidine kinase [Burkholderiales bacterium 1_1_47]
 gi|302859423|gb|EFL82504.1| putative sensor histidine kinase [Burkholderiales bacterium 1_1_47]
          Length = 695

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 74/232 (31%), Gaps = 19/232 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSS 57
           A++    +    L   L     H++ +P+  +  + E L     +   ++   +L+  + 
Sbjct: 452 ARDATSEVQIDRLKDELIGIAAHELKTPLAGVRMAAECLVKTVQDPEGKETAAELLESAD 511

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-----EDFIAVDKRVQVSWTGEKIDLS 112
               +  +++ +A   TGS +       I+ +I           D    +  + +    +
Sbjct: 512 EMKDMISRWLDVAKLQTGSYEIHPEFCLIKPMIRKALKHFSGFNDFECSLEISPDAAAAN 571

Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTISVQDS--KNENIFSLKINGNLARF---PEKF 164
            +     +I+ NL   A+     G    + +Q     +     ++ +G         + F
Sbjct: 572 VDKQAFMQIIQNLLSNAYKYRKEGSACRVKIQTRKLGDFLELMVEDDGIGVPESALDKIF 631

Query: 165 TQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +      +    I    +  Y    L   +K ++          V +  L 
Sbjct: 632 DRFYQVRMDSARKIGGTGLGLYITKELVLLHKGKVTVASTLGEGTVFTLELP 683


>gi|300088021|ref|YP_003758543.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527754|gb|ADJ26222.1| PAS/PAC sensor signal transduction histidine kinase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 638

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 62/218 (28%), Gaps = 20/218 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLA------ 70
           L    + H++ +P+  +  + E L++   +    +  R     A    K +         
Sbjct: 405 LFTRGLVHELKTPLTPLITASEYLEQHLTDKTAREFARNIRTGAHNMEKRVNEMLDLAKG 464

Query: 71  -----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----WTGEKIDLSRERAKILLN 121
                       D +  +    + ++          V+       E         +++ N
Sbjct: 465 EIGTLNVQNSRFDLVELVSLTAEFMKPEADRRGLELVTTLPPDPVEIEADPDRLRQVMSN 524

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           L   +     RGG++ I+   S++     +  NG      +        +      +S +
Sbjct: 525 LLGNSIKFTKRGGRIEIATGSSEHSVFIRVTDNGAGIAEADLPYLFQAYHRGQTSEKSRM 584

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +      ++   +  R+  +         +  L 
Sbjct: 585 SGLGLGLTLSRMIVELHGGRIDLDSKKGQGTTFTITLP 622


>gi|258406509|ref|YP_003199251.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
 gi|257798736|gb|ACV69673.1| PAS/PAC sensor signal transduction histidine kinase
           [Desulfohalobium retbaense DSM 5692]
          Length = 573

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/227 (10%), Positives = 59/227 (25%), Gaps = 17/227 (7%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIR 54
           + K++     +  L  +  L + + H+I +P+ A+    +                Q + 
Sbjct: 341 LEKDLE---ETRKLATIGRLAAGLAHEIRNPLSALRGFAQYFAGKFAPEEQAHTYAQTMV 397

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD-------SLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
             +      +  +                      L  +        +    + +     
Sbjct: 398 READRLNRVVTDLLYMARPQPPHPQSLSLRALAEDLERLLGFDLKQHSTTFALDLETDHV 457

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
             D    R  +L  L     A    GG +T++ Q S       ++  G       +   +
Sbjct: 458 WADEEGLRRILLNLLLNSLSALPEAGGHITLATQSSGTGIWILVRDTGQGMDEATREQAL 517

Query: 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    +      +    V  +  ++   L      D    ++    
Sbjct: 518 -EPFFTTKDRGTGLGLALVHRIVRDHGGSLEIRTAPDAGTEVALFFP 563


>gi|197116418|ref|YP_002136845.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
 gi|197085778|gb|ACH37049.1| sensor histidine kinase [Geobacter bemidjiensis Bem]
          Length = 289

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 70/241 (29%), Gaps = 32/241 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI--------EDEVMQLIR 54
               L    L A+  L   I HD+ + +  I  +LELL +            D  +   R
Sbjct: 48  EKQLLQVQKLAAVGVLAGSIAHDLNNLMMGISGNLELLRQAKEPDAASQKYMDNALDASR 107

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL--- 111
            ++  +   L F R       SVD    + +  ++++  +     + V    E   +   
Sbjct: 108 RAANLSRQMLAFSRKGSQEVKSVDLNRLVAENLELMKGSMRKGISLSVRLEPELPPIEAE 167

Query: 112 SRERAKILLNLFMVAHASL------------------PRGGKVTISVQDSKNENIFSLKI 153
             +  ++++NL   A  +L                              S       +  
Sbjct: 168 PGKMQQLIVNLVTNAAEALGETGAIGVSTGVGELPAAEFTWSRVEPKPASGRFVFIEVSD 227

Query: 154 NGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +G      E   ++ D    +      +    V  +   +   +L +        + A L
Sbjct: 228 SGCGM-DGETSDRMFDPLFSTKAAGRGLGLTAVHAIVKASGGAILADTAPGEGTTIRAFL 286

Query: 214 E 214
            
Sbjct: 287 P 287


>gi|41406358|ref|NP_959194.1| hypothetical protein MAP0260 [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394706|gb|AAS02577.1| hypothetical protein MAP_0260 [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 496

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 56/216 (25%), Gaps = 19/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
              +   H++ +P+ AI    EL     D+     + M  +   +      ++ + L   
Sbjct: 272 QFVADASHELRTPLAAIRGYTELTQRMGDDREAVAQAMSRVASETERMTRLVEDLLLLAR 331

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---------ERAKILLNLF 123
                       D+ ++  D +            E                  ++L NL 
Sbjct: 332 LDSGRPLEREPVDLSRLAVDAVNDAHVAGPDHQWELDLPEEPVVVTGDAARLHQVLTNLL 391

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDS-- 178
             A      G  VT  +       +  +  NG         E F +   G+   +     
Sbjct: 392 ANARVHTGAGTVVTTRLSTEPAHTVLQVIDNGPGIPAELQSEVFERFARGDSSRSRKGGS 451

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   +   +       H    +  L 
Sbjct: 452 TGLGLAIVSAVVKAHNGTISVNSSPGH-TEFTVRLP 486


>gi|17230659|ref|NP_487207.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
 gi|17132262|dbj|BAB74866.1| two-component sensor histidine kinase [Nostoc sp. PCC 7120]
          Length = 420

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 66/219 (30%), Gaps = 22/219 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLE--LLD---EVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             +   H++ SP+ AI ++ +  LL    +   + + +Q I   + S  I +  +     
Sbjct: 200 FTADASHELRSPLSAIVSNAQYGLLTKSTDPETQRQRLQKIFDIAQSMSILVNDLLFLAR 259

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA------------KILL 120
           Y G +          +++   I  D          K+  +                + ++
Sbjct: 260 YQGRIPIESLQTVDLKILLLQIQDDFLPHPETQHIKLLFTLPNHHVSVLGDANLLRQAVI 319

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VEST 175
           NL   A    P GG+V + +    N  +  +  NG      +    F +    +      
Sbjct: 320 NLLSNACKYTPEGGQVELQLFTQSNWAVIQVVDNGIGIPQDDVPYIFERFYRVDKKRSRK 379

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +       +   +  ++      +       LL 
Sbjct: 380 TGGFGLGLAITQQIIQSHGGKINVHSAVNQGATFQVLLP 418


>gi|330501197|ref|YP_004378066.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
 gi|328915483|gb|AEB56314.1| multi-sensor signal transduction histidine kinase [Pseudomonas
           mendocina NK-01]
          Length = 749

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 64/236 (27%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           +A+ +     ++     L + + HD+ +P+  I     ++      +       +     
Sbjct: 507 LARQVLREQEAVRARDELVAVVSHDLRNPMTVISMLCSMMQKTFSSDGPHTSRRIATALD 566

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD---------------KRV 100
           +   A  R+  +      T  +D+       +++    +  +                  
Sbjct: 567 TMQQAAGRMNTLLEDLLDTSKIDAGRYTITPQKLDVGHMFEEAQSLLAPLALDKDISISF 626

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               ++L NL   A    PR G V +  +    + +FS++ +G     
Sbjct: 627 EADPDLRIHADPERLFQVLSNLIGNAIKFTPRRGTVGVRAKSVGGDIVFSVRDSGEGIPE 686

Query: 161 PEKFTQI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +       +  Y    +   +   ++ E            + 
Sbjct: 687 EHLPHVFDRYWTAKDGNPTGTGLGLYITQGIVEAHGGHIVVESELGKGSEFQFTVP 742


>gi|315304578|ref|ZP_07874824.1| sensor histidine kinase [Listeria ivanovii FSL F6-596]
 gi|313627056|gb|EFR95943.1| sensor histidine kinase [Listeria ivanovii FSL F6-596]
          Length = 380

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 66/238 (27%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMDLVAL----LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQ 51
           M +     +   +        L + + HD+ +P+ +I   L  +      +        +
Sbjct: 142 MRERQNKLMKQEEQAQQARNDLITNVSHDLRTPLTSILGYLSYIHEDRYRDEIELRYYTE 201

Query: 52  LIRLSSMSAIIRLKFMRLAFG---------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           L+   +      +  +                      +    + +        + ++  
Sbjct: 202 LVYGKARHLHKLIDDLFSYTRLDSVEYRLKKDELDVIELLSQLVAEYDGQATERNMKIVD 261

Query: 103 SWTGEKIDLSRERAKILL---NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
            +  +K+ +S +  +I+    NLF  A        ++ +S +   N  +  +   G    
Sbjct: 262 HFDAKKLIISGDGNQIMRLFENLFSNALRYGEGDKQIDVSAKQEGNMAVVKVTNYGQEIS 321

Query: 160 FPEK---FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +    +   T     +       +  ++   +  E  +         L 
Sbjct: 322 EIDLPYLFERFYKADKNRTTTGTGLGLAIAKSIVEKHGGIVTAESKNRK-TTFIVKLP 378


>gi|306832035|ref|ZP_07465190.1| sensor histidine kinase CsrS [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304425961|gb|EFM29078.1| sensor histidine kinase CsrS [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 494

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 23/222 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLA 70
           A   S + H++ +PI  I   L LL   G ED+      +      +    I +  M   
Sbjct: 263 ARFVSDVSHELRTPIAVIKGHLGLLKRWGKEDQHILEESLDAAYHETDRMSIMVNEMLDM 322

Query: 71  FGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               GS D               +    +++           V              + +
Sbjct: 323 VRVQGSFDLHKGEKTDLKKSIEFVLGNFRILHPDFNFQFSTSVEECVFAEIYKNHFEQAI 382

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST- 175
           L L             + +++    ++ I  +K  G      +    F +    +     
Sbjct: 383 LILIDNGVKYSSGSKIIHVTLDIQGDDAIVKVKDEGEGISQEDLKYIFERFYRTDKSRNR 442

Query: 176 ---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   I    +  +    ++ +    + D     + ++ 
Sbjct: 443 VSTQGGLGIGLAILKQIVDAYELNVSVNSVVDEGTEFTLVIP 484


>gi|288906016|ref|YP_003431238.1| two-component sensor histidine kinase, Cov S family [Streptococcus
           gallolyticus UCN34]
 gi|325978983|ref|YP_004288699.1| TCS sensor kinase CovS-like [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288732742|emb|CBI14316.1| putative two-component sensor histidine kinase, Cov S family
           [Streptococcus gallolyticus UCN34]
 gi|325178911|emb|CBZ48955.1| TCS sensor kinase CovS-like [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 494

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 59/222 (26%), Gaps = 23/222 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV-----MQLIRLSSMSAIIRLKFMRLA 70
           A   S + H++ +PI  I   L LL   G ED+      +      +    I +  M   
Sbjct: 263 ARFVSDVSHELRTPIAVIKGHLGLLKRWGKEDQHILEESLDAAYHETDRMSIMVNEMLDM 322

Query: 71  FGYTGSVDSLI-----------GLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               GS D               +    +++           V              + +
Sbjct: 323 VRVQGSFDLHKGEKTDLKKSIEFVLGNFRILHPDFNFQFSTSVEECVFAEIYKNHFEQAI 382

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST- 175
           L L             + +++    ++ I  +K  G      +    F +    +     
Sbjct: 383 LILIDNGVKYSSGSKIIHVTLDIQGDDAIVKVKDEGEGISQEDLKYIFERFYRTDKSRNR 442

Query: 176 ---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   I    +  +    ++ +    + D     + ++ 
Sbjct: 443 VSTQGGLGIGLAILKQIVDAYELNVSVNSVVDEGTEFTLVIP 484


>gi|257481977|ref|ZP_05636018.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|331008837|gb|EGH88893.1| histidine kinase-response regulator hybrid protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 694

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/230 (11%), Positives = 70/230 (30%), Gaps = 25/230 (10%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGI----------EDEVMQLIRLSS 57
            S+ + A+  L   I HD  + +  +  SL+L+                D  +   + ++
Sbjct: 320 QSLKMEAVGQLTGGIAHDFNNMLTGVIGSLDLIKLRMASGRLEGVERFMDAALISAQRAA 379

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAK 117
                 L F R       +V     +  +  +++  +     ++   + E   +  +  +
Sbjct: 380 SLTDRLLAFSRRQSLDEKAVSVNNLITALADLLQKTVTEKIIIKFDLSPEDPWVFADANQ 439

Query: 118 ILLNLFM---VAHASLPR-------GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +   +      A  ++P              +  +        ++  G+     +   ++
Sbjct: 440 LENAVLNLVINARDAMPHGGGLTIATCVEQEAQDEPLRHVCVQVRDTGHGI-PKDMLDKV 498

Query: 168 VDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +    +        +    V   A+++  RL  E        +S  L K
Sbjct: 499 TEPFFTTKPIGQGTGLGLSMVYGFANQSNGRLSIESTIGVGTTVSICLPK 548


>gi|258404556|ref|YP_003197298.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfohalobium retbaense DSM 5692]
 gi|257796783|gb|ACV67720.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Desulfohalobium retbaense DSM 5692]
          Length = 498

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 30/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           +        M+ +  L S I HD  + +G I  + +LL E       E +++Q I  ++ 
Sbjct: 249 ERQLRTAQKMEAIGTLASGIAHDFNNILGPILLNAQLLLERSPLCDEERDLLQEINDAAE 308

Query: 59  SAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
            A   ++ +                    + +  +++   +    R++     E+  +  
Sbjct: 309 RARHLVRQILHLGRRREAEQPVPFRLSTIIKECCKLLRPTLPETLRIEHRLHTEQDTIVA 368

Query: 114 ER---AKILLNLFMVAHASLPRGG---------------KVTISVQDSKNENIFSLKING 155
           +     + ++NL   A  ++ R                 +    +   +     +++ +G
Sbjct: 369 DPTQIHQAIMNLCTNAVHAMDRRPGVLRFVLQTADPETIRTKPQLNVGRPYICLAIEDSG 428

Query: 156 NLARFPEKFTQIVDGNVESTIDS--HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                 E  +Q+ D    +  D     +    V  +  +    +  +       V +  L
Sbjct: 429 RGM-SEEVLSQVFDPFFTTKNDGLGTGLGLPVVQNIITQLGGTVTVQSAPGQGSVFALYL 487

Query: 214 E 214
            
Sbjct: 488 P 488


>gi|254445977|ref|ZP_05059453.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
 gi|198260285|gb|EDY84593.1| PAS fold family [Verrucomicrobiae bacterium DG1235]
          Length = 1028

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 59/255 (23%), Gaps = 43/255 (16%)

Query: 1   MAKNICFNLSSMDLVAL------------LCSRICHDIISPIGAIHNSLELLDEVGIEDE 48
           M       LS + L A               + + H++ +P+  I     +L E     E
Sbjct: 625 MEAERKLALSEL-LAAKEEAERANAAKDDFLAVMSHEMRTPLNPIMGYASILQERFPGGE 683

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGS----VDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
               +     S+   L  +     Y       V  +    D+  +    +   + +    
Sbjct: 684 EHDYLGRIIGSSKRLLTLIDDLLDYVRVGEGAVKPVWSSVDLVALCVQAVEDSRSLARDL 743

Query: 105 TGEK----------------IDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKN 145
                                       +I+ NL   A     +G      +    +   
Sbjct: 744 AVSFVNGPRGSLPMSEGTLVRCDGTMLLRIIDNLLSNAFKYTKQGSVTLELSEGRSEDGE 803

Query: 146 ENIFSLKINGNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLP 199
                +   G      E   +I +             +   +       LA     R+  
Sbjct: 804 IVRIDVVDTGIGIDL-EATPRIFEPFAQADSSYTRQFEGAGLGLAICKQLAEALGGRIEI 862

Query: 200 EIIDDHNVVLSALLE 214
           E         S +L 
Sbjct: 863 ESELGKGSRFSLILP 877


>gi|193213741|ref|YP_001994940.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
 gi|193087218|gb|ACF12493.1| multi-sensor signal transduction histidine kinase [Chloroherpeton
            thalassium ATCC 35110]
          Length = 1332

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 71/231 (30%), Gaps = 20/231 (8%)

Query: 1    MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHN--------SLELLDEVGIEDEVM-- 50
            +A ++      +   A +   + HD+ +P+ AI +         ++ LDE G E   +  
Sbjct: 1100 LAHDLQKANRELKDFAYI---VSHDLKAPLRAIGSLSSWLYSDYVDRLDEEGKETLSLLV 1156

Query: 51   QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-GEKI 109
              ++         L++ R+       V+  + L   E V    I     V    +    I
Sbjct: 1157 GRVKRMHDLIEGILQYSRIGRIKEAFVEIELDLLIDEIVDFLSIPKHISVVKDTSLPNII 1216

Query: 110  DLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
                   ++  NL   A     +  G+++I   ++     F +K NG          +I 
Sbjct: 1217 AEKTRMMQVFQNLISNAVKYNDKEHGEISIGHVENGETWQFYVKDNGPGIDEKY-HEKIF 1275

Query: 169  DGNVE----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                        +S  I    V  +       +  E            L K
Sbjct: 1276 QIFQTLAPRDEHESTGIGLTIVKKIIEMYGGTIAVESTMGKGTTFWIELPK 1326


>gi|49477047|ref|YP_035263.1| sensor histidine kinase; MrsK2 protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49328603|gb|AAT59249.1| possible sensor histidine kinase; possible MrsK2 protein [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 464

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 59/215 (27%), Gaps = 21/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS----------------MSAIIRL 64
            I HD+ +P+ +I    E++     +    ++ + +                        
Sbjct: 247 NISHDLKTPLSSIKGYSEVIGNREYKITAQEMYQYAEVIQNKSIYIEKMIDDLKLTYQLK 306

Query: 65  KFMRLAFGYTGSV--DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
             +      T  +   +   + +   +      + +   +              + ++NL
Sbjct: 307 NTLLPIHKTTVDIVNLTREIIIEFLNMPHYENRIIEFECLQEEIIIKADQGLIQRAIVNL 366

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID---SH 179
              A         + + ++ +    I +++ NG      +           +  D     
Sbjct: 367 LNNALIHTDNKTLIQVCIKQTIGYTIVTIEDNGEGINKSDLPHIFDRYFRGTNTDPKSGS 426

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V  +   +   +  E I+ +   ++  L 
Sbjct: 427 GLGMAIVKEIIVAHGGEIAVESIEGNGTKITFQLP 461


>gi|331682109|ref|ZP_08382733.1| sensor protein KdpD [Escherichia coli H299]
 gi|331080788|gb|EGI51962.1| sensor protein KdpD [Escherichia coli H299]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I       +    +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGEKLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|331662051|ref|ZP_08362974.1| sensor protein KdpD [Escherichia coli TA143]
 gi|331060473|gb|EGI32437.1| sensor protein KdpD [Escherichia coli TA143]
          Length = 894

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +     ++   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPSLPSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|293408806|ref|ZP_06652645.1| sensor protein KdpD [Escherichia coli B354]
 gi|291471984|gb|EFF14467.1| sensor protein KdpD [Escherichia coli B354]
          Length = 905

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 660 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 718

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 719 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 778

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 779 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 838

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 839 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 891


>gi|297570445|ref|YP_003691789.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926360|gb|ADH87170.1| integral membrane sensor signal transduction histidine kinase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 589

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 74/236 (31%), Gaps = 23/236 (9%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIH----NSLELLDEVGIEDEVMQLIRL 55
           A  +     +  L +L  L + + H+I +P+  I+       +LL   G      + +  
Sbjct: 335 ATALREAARANKLASLGRLAAGVAHEINNPLAIINEKAGLLADLLTRAGDAPPPKEKLLS 394

Query: 56  SSMSAII-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVS 103
              S               L F R        V+    + ++ +   ++    +  V V 
Sbjct: 395 QVESIHRAVARCAGITRRLLGFARPGEIKLEPVELAEVVQEVLEFHGKEAAHRNITVGVE 454

Query: 104 WTGEKIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQDSK-NENIFSLKINGNLAR 159
              E   L+ +R    +I LNL   A A++   G + I+         + ++  +G    
Sbjct: 455 IDPELPVLTSDRNKLQQIFLNLVGNAFAAMEDRGHLYITGSRPDTERVLITVTDDGCGIA 514

Query: 160 FPEKFTQIVDGNVE-STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +            S  +   +  +    L  E +  +  E + D        L 
Sbjct: 515 EADLKKVFEPFFSTKSKDEGTGLGLFVTYGLVRELRGTIRVESMADAGTRFFITLP 570


>gi|259907005|ref|YP_002647361.1| aerobic respiration control sensor protein ArcB [Erwinia pyrifoliae
           Ep1/96]
 gi|224962627|emb|CAX54082.1| Aerobic respiration control sensor protein ArcB [Erwinia pyrifoliae
           Ep1/96]
 gi|283476800|emb|CAY72638.1| aerobic respiration sensor-response protein [Erwinia pyrifoliae DSM
           12163]
          Length = 779

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 58/220 (26%), Gaps = 24/220 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTHLDQEQLKYLKTIHVSAITLGNIFNDVIEMDKMERR 347

Query: 80  LIGLGDIEQVIEDFIAVDKRV----------------QVSWTGEKIDLSRERAKILLNLF 123
            + L         F+A  + +                Q     + +       +IL NL 
Sbjct: 348 KVQLDTQPMDFTGFLADLENISGLLVEPKGLKFVLETQPPLPHKILADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST------ID 177
             A     +G  V      S+    F ++ +G      E+                    
Sbjct: 408 GNAVKFTRQGEIVVRVGYQSEECLRFDVQDSGIGIPQDEQDKIFAMYYQVKDRRGGKPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL--EK 215
              I       LA      +            +  L   +
Sbjct: 468 GTGIGLAVSRRLAQSMGGDISVSGAPGKGSCFTLTLNAPR 507


>gi|217963901|ref|YP_002349579.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290892107|ref|ZP_06555103.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|217333171|gb|ACK38965.1| sensor protein ResE [Listeria monocytogenes HCC23]
 gi|290558230|gb|EFD91748.1| sensor histidine kinase ResE [Listeria monocytogenes FSL J2-071]
 gi|307571529|emb|CAR84708.1| two-component sensor histidine kinase [Listeria monocytogenes L99]
          Length = 596

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 72/242 (29%), Gaps = 32/242 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-----GIEDEVMQLIRL 55
           M +          + +   + + H++ +PI  +    E + +          E  Q+I  
Sbjct: 356 MTEEKQL----EKMKSDFVNNVSHELRTPISMLQGYSEAIIDGVAQSDEEVREFAQIIYD 411

Query: 56  SSMSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
            S+     +  M           ++          L  +     V+     V+  +++  
Sbjct: 412 ESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKVISNFDVLAKENFVELGLELET 471

Query: 105 TGEKIDLSRERA-KILLNLFMVAHASLPRGGKV-----TISVQDSKNENIFSLKINGNLA 158
              +     +R  ++L+NL M A     + G         ++ ++++  + ++  NG+  
Sbjct: 472 PDLEYSFDPDRMEQVLINLIMNAIRHTGKEGYDGKVILKQTIDEARSNLVITVSDNGSGI 531

Query: 159 RFPEK---FTQIVDGNVESTID---SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
              +    F +    +            I    V  +   +  ++  E            
Sbjct: 532 AEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVKNIVEAHNGKISVESELGKGSDFIIT 591

Query: 213 LE 214
           L 
Sbjct: 592 LP 593


>gi|254427604|ref|ZP_05041311.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
 gi|196193773|gb|EDX88732.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Alcanivorax sp. DG881]
          Length = 538

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 22/232 (9%), Positives = 74/232 (31%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M  +I   + S      +   + H++ +P+  +   LE+L ++   +   + +       
Sbjct: 299 MTAHIRRLIESQR---EMTRAVSHELRTPVARLRFGLEMLADIESAERRREKLNAMDHDI 355

Query: 61  IIRLKFMRLAFGYTGSVD----------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
               + +     Y                +  L +  +   + I  +  + V+     ++
Sbjct: 356 EQLDQLIDEILTYARLEQGTPNIEFQPVVIGELCEQLRDELETIRDETAIAVANPYPTLE 415

Query: 111 LSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
           +  E   +   L  +   +L     ++ + V++S+++ +  +  +G      E+  ++  
Sbjct: 416 VEAEERYLHRVLQNLVTNALRYAQSRIVMRVEESEDQVVIHVDDDGPGIPEHER-ERVFK 474

Query: 170 GN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                          + +    V  +   +   +  +   +     +  L K
Sbjct: 475 PFARLDKSRHRASGGYGLGLSIVKRIVDWHGGEIRVDESPEGGARFTVTLPK 526


>gi|153004585|ref|YP_001378910.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028158|gb|ABS25926.1| GAF sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 763

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 19/213 (8%), Positives = 49/213 (23%), Gaps = 21/213 (9%)

Query: 23  CHDIISPIGAIHNSLELLDEV------GIEDEVMQLIRLSSMSAIIRLK----------- 65
            H++ +P+ ++    E L                ++IR +       +            
Sbjct: 534 SHELRTPLTSLALQSESLRARATRLGVEDVARKAEVIRRNVDRLARLVASLLDLSRITAG 593

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
            + L        +    +    +        +  +                ++L NL   
Sbjct: 594 RLELEIESFDLAELARDVVGRFEDEARRAGCELVLSAPEPVPGSWDRLRLDQVLTNLVSN 653

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTIDSHDIQ 182
           A    P                I S++  G      +    F +      + +     + 
Sbjct: 654 AIKYGPNQPVEVRVEGH-GERAIASVRDRGIGISPEDQARIFGRFERAVSKRSYGGFGLG 712

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + V  +       +  E         +  L +
Sbjct: 713 LWIVREIVESLGGTVRVESAPGEGATFTVELPR 745


>gi|71906413|ref|YP_284000.1| sensor histidine kinase [Dechloromonas aromatica RCB]
 gi|71846034|gb|AAZ45530.1| PAS/PAC sensor signal transduction histidine kinase [Dechloromonas
           aromatica RCB]
          Length = 397

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 21/219 (9%), Positives = 63/219 (28%), Gaps = 15/219 (6%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG-IEDEVMQLIRLSSMSAIIRLKF 66
            +  L A+  + + + H + +P+ A       L + G  ++   +    +S       + 
Sbjct: 169 RNQRLAAMGEMAASLAHQLRTPLAAALLYTSNLGQPGVADEARARFSEKASGQLRRLERL 228

Query: 67  MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM-- 124
           ++    +         + D   ++ +     + +      E   +      I++      
Sbjct: 229 IQDVLLFARGESIGRDVIDAGDLLAEAAQTVEPLMREHGLEFAVVDESAGAIIVGSRKAL 288

Query: 125 ---------VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST 175
                     A  + P GGK+ ++     +     ++ +G      E   +I +    + 
Sbjct: 289 FGALVNLLENAMQATPAGGKICLTGNRRGDLIAVGVRDSGPGI-SRETQARIFEPFFTTK 347

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +     + +A  +   +               L 
Sbjct: 348 GQGTGLGLAIALGVARAHGGAIELFSEPGAGAEFVMTLP 386


>gi|117925519|ref|YP_866136.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
 gi|117609275|gb|ABK44730.1| PAS/PAC sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
          Length = 1049

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 59/220 (26%), Gaps = 22/220 (10%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           A L   + H+I +P+ +I    +LL E  ++ E    ++  + +    +  +      + 
Sbjct: 550 AFLA-VMSHEIRTPMNSILGMTDLLMEHALDAEQRHALQAIARAGDALMIIINDILDLSK 608

Query: 76  SVDSLIGL----------------GDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                + L                    +  E  + +    +   +  +        +IL
Sbjct: 609 IEADRLELELVETDLDNLMANLGDMLTLRAQEKGVKLSLLREEQLSPYRWCDQVRLRQIL 668

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVES 174
           +NL   A     +G       +   N   FS+  +G      ++          D +V  
Sbjct: 669 VNLIGNAIKFTHQGSIEVKLSKGPGNRIRFSVSDSGIGIDLQQQEAIFESFNQGDSSVTR 728

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       L       L               + 
Sbjct: 729 RYGGTGLGLSISQRLVKLMGGVLKVYSRPGKGSTFFFTIP 768


>gi|186680884|ref|YP_001864080.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
 gi|186463336|gb|ACC79137.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
          Length = 1233

 Score =  107 bits (268), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 60/238 (25%), Gaps = 31/238 (13%)

Query: 8    NLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQLIRLSSM 58
                ++ V  L S I HD+ +    I    ELL             +   +    +  + 
Sbjct: 854  RAQRLESVGTLASGIAHDLNNVFAPIIMIAELLPLRYKNVDLQTQELFKTLENSSQRGAN 913

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEKIDLSRE 114
                 L F R   G    +     L ++ +VI+        +                 +
Sbjct: 914  LVKQILTFTRGTEGKRILLQPGHLLQELVKVIKQTFPKSIEIVNDIPINTLWMVQADPTQ 973

Query: 115  RAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGNLAR 159
              ++ +NL + A  ++P  G                       +    + ++   G    
Sbjct: 974  LEQVFMNLAVNARDAMPNDGMLTINAENRMIDETNARMHLDAKAGGYMVVTVSDTGTGIP 1033

Query: 160  FPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                  +I D    +        +    V+ +   +   +               L +
Sbjct: 1034 PEFL-ERIFDPFFTTKEVGKGTGLGLSTVLGIVKNHGGFVEVSTQVGKGTRFQVFLPR 1090


>gi|310824892|ref|YP_003957250.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
 gi|309397964|gb|ADO75423.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
          Length = 693

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 18/213 (8%), Positives = 54/213 (25%), Gaps = 21/213 (9%)

Query: 23  CHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRLKFMRLAFG----- 72
            H++ +P+  +   L  L+        ++   +   R         +  +          
Sbjct: 463 SHELKTPLTPLSLRLATLERKLERGEPVDPASLHHARQHLTRLTTLINDLLDTSRIESGG 522

Query: 73  ---YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM---VA 126
              +       + +  +  V E       R+        I++  +  ++   +      A
Sbjct: 523 LALHPQPTRLDVLIEHVIHVTETLHDARDRITFHLPVRPIEVLGDPYRLEQVISNLLENA 582

Query: 127 HASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST-----IDSHDI 181
               P GG + +S++   +  + ++   G      ++                      +
Sbjct: 583 LKYSPDGGTIRVSLEARGDVVLMTVSDPGIGIPSDQQQHLFERYFRARNVSTHAYGGLGL 642

Query: 182 QFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             Y    +   +   +  E            L 
Sbjct: 643 GLYICRDIVARHGGSIWVESEVGRGSTFYVALP 675


>gi|270488524|ref|ZP_06205598.1| PAS domain S-box [Yersinia pestis KIM D27]
 gi|270337028|gb|EFA47805.1| PAS domain S-box [Yersinia pestis KIM D27]
          Length = 796

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + L +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQLDNQPVDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNVESTID 177
             A     +G  V    ++  +  IF ++ +G      E       + Q+ D N      
Sbjct: 408 GNAVKFTQQGKIVVRVRREGNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIK 504


>gi|268326254|emb|CBH39842.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1037

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 55/214 (25%), Gaps = 19/214 (8%)

Query: 21   RIC-HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
             +  H++ SP+  I     LL++  + ++  + +R+   SA    + +      T     
Sbjct: 821  NVAYHEMRSPLAPIVGYASLLEQGELNEKQKKYVRIIEESASQLEELIESMLEVTRLEAG 880

Query: 78   ------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                        + +  + +      D         V    E     ++   I  NL   
Sbjct: 881  KAELSLEKMSIPEIVNNVLERFGPQADAKKQTISAVVPEGTEVEGDKQKITAIFDNLISN 940

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE----STIDSHDI 181
            A       G++ I V+D K      +   G      +         +            +
Sbjct: 941  AIKYTGEKGRIDIVVEDRKEGIRVCVADTGIGIPKEQLPRAFERFFMADTSLRRKGGLGL 1000

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                V      +   +               L K
Sbjct: 1001 GLAIVKGYVKLHGGEVWVTSELGKGSKFWFTLPK 1034


>gi|268325194|emb|CBH38782.1| putative sensory transduction histidine kinase [uncultured archaeon]
          Length = 1036

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 55/214 (25%), Gaps = 19/214 (8%)

Query: 21   RIC-HDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV-- 77
             +  H++ SP+  I     LL++  + ++  + +R+   SA    + +      T     
Sbjct: 820  NVAYHEMRSPLAPIVGYASLLEQGELNEKQKKYVRIIEESASQLEELIESMLEVTRLEAG 879

Query: 78   ------------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
                        + +  + +      D         V    E     ++   I  NL   
Sbjct: 880  KAELSLEKMSIPEIVNNVLERFGPQADAKKQTISAVVPEGTEVEGDKQKITAIFDNLISN 939

Query: 126  AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVE----STIDSHDI 181
            A       G++ I V+D K      +   G      +         +            +
Sbjct: 940  AIKYTGEKGRIDIVVEDRKEGIRVCVADTGIGIPKEQLPRAFERFFMADTSLRRKGGLGL 999

Query: 182  QFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                V      +   +               L K
Sbjct: 1000 GLAIVKGYVKLHGGEVWVTSELGKGSKFWFTLPK 1033


>gi|262382739|ref|ZP_06075876.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_33B]
 gi|262295617|gb|EEY83548.1| two-component system sensor histidine kinase/response regulator
           [Bacteroides sp. 2_1_33B]
          Length = 916

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 62/240 (25%), Gaps = 28/240 (11%)

Query: 4   NICFNLSSMDLVALLC-------------SRICHDIISPIGAIHNSLELL---DEVGIED 47
           N     ++  L++L               + + H++ +P+  I   L+ L          
Sbjct: 388 NRKMRQANRKLISLNAEMKEVTAQKLQFFTNVSHEVRTPLTLILAPLDRLIVSLRESPYA 447

Query: 48  EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD---------SLIGLGDIEQVIEDFIAVDK 98
             + LI+ ++   +  +  +       G  +                             
Sbjct: 448 SDLGLIQKNANRLLRVINQILDFRKVEGKQEKLAVREIDLVPFVGEIKSYFDSMASVRAI 507

Query: 99  RVQVSWTGEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKING 155
               + + ++  L  +     K+  NL   A    P GG V I + +        +   G
Sbjct: 508 SYTFTSSIKQCTLWIDPDLLEKVFFNLLSNAFKFTPEGGSVRIELTEEGGRVFIRVIDTG 567

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +  R             E       I  + V      +   +  E         +  L K
Sbjct: 568 SGIRPANLPHLFDRFYTEDRSMGTGIGLHLVKEYIDMHGGEIRVESEPGQRTTFTVCLRK 627


>gi|259482698|tpe|CBF77424.1| TPA: Histidine kinase J7 [Source:UniProtKB/TrEMBL;Acc:Q6WJ24]
           [Aspergillus nidulans FGSC A4]
          Length = 1297

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
           +       + +L     +   + + H+I +P+  I    +L LD   ++    +++ +  
Sbjct: 708 QRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYTREMLNVVH 767

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQ 101
             A   L  +      +    + + +  I   +   +                    +V 
Sbjct: 768 NLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVD 827

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKIN 154
            +     I       +I+LNL   A                       ++    FS+   
Sbjct: 828 NTVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAANEYAFEFSVSDT 887

Query: 155 GNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G               Q  DG+         +       L +     +       H    
Sbjct: 888 GIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTF 947

Query: 210 SAL 212
              
Sbjct: 948 HFT 950


>gi|254773314|ref|ZP_05214830.1| sensor histidine kinase [Mycobacterium avium subsp. avium ATCC
           25291]
          Length = 496

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 56/216 (25%), Gaps = 19/216 (8%)

Query: 17  LLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
              +   H++ +P+ AI    EL     D+     + M  +   +      ++ + L   
Sbjct: 272 QFVADASHELRTPLAAIRGYTELTQRMGDDREAVAQAMSRVASETERMTRLVEDLLLLAR 331

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR---------ERAKILLNLF 123
                       D+ ++  D +            E                  ++L NL 
Sbjct: 332 LDSGRPLEREPVDLSRLAVDAVNDAHVAGPDHQWELDLPEEPVVVTGDAARLHQVLTNLL 391

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDGNVESTIDS-- 178
             A      G  VT  +       +  +  NG         E F +   G+   +     
Sbjct: 392 ANARVHTGAGTVVTTRLSTEPAHTVLQVIDNGPGIPAELQSEVFERFARGDSSRSRKGGS 451

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    V  +   +   +       H    +  L 
Sbjct: 452 TGLGLAIVSAVVKAHNGTISVNSSPGH-TEFTVRLP 486


>gi|254420304|ref|ZP_05034028.1| PAS fold family [Brevundimonas sp. BAL3]
 gi|196186481|gb|EDX81457.1| PAS fold family [Brevundimonas sp. BAL3]
          Length = 759

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 67/246 (27%), Gaps = 33/246 (13%)

Query: 1   MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEV------------- 43
           +A+     ++  +      +   + + H++ +P+ AI+   E++                
Sbjct: 498 LARKYEIAMTRAEAANQAKSEFLANMSHELRTPLNAINGFSEIMAAELFGPIGEKYKGYA 557

Query: 44  ----GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
                    ++ LI      A I    M L +      D       + +       +   
Sbjct: 558 GDILKSGQHLLSLINDILDMAKIEAGKMTLHYEPVSLRDVCEDAARLMRGKVLESGLTLE 617

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGK-----VTISVQDSKNENIFSLKIN 154
           ++     +     R   +++LNL   A    P GG              ++    +    
Sbjct: 618 IEAGDLPDIEADHRGVKQVMLNLISNAVKFTPEGGTVTLSLTPFKGAAGEDRVRVACADT 677

Query: 155 GNLARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVV 208
           G     PE   ++             T     +       L   +  RL  E       V
Sbjct: 678 GIGI-APEHMVRLARPFEQVEGQHSKTTQGTGLGLALTKSLIEMHGGRLNIESEPGVGTV 736

Query: 209 LSALLE 214
           +S  L 
Sbjct: 737 VSFDLP 742


>gi|152992982|ref|YP_001358703.1| hypothetical protein SUN_1395 [Sulfurovum sp. NBC37-1]
 gi|151424843|dbj|BAF72346.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 645

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 65/239 (27%), Gaps = 28/239 (11%)

Query: 3   KNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIRLS 56
           KN    L   DL     +   S + HDI +P+ A+   L+LL E     + E +Q    S
Sbjct: 150 KNNAIKLQEFDLYPDRKSEFFSSVIHDIRTPMNAVLGFLDLLKEEVDPKQVEYVQSAHKS 209

Query: 57  SMSAIIRLKFMRL-------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
           +   I  +  +                +           L      +   I     V  +
Sbjct: 210 AEMVIALINDVLDFNKISSGKLKIDLYYFSPVKELENTALLFYHNALSKRIDFIIYVDPN 269

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARFP 161
                        +I+ NL   A    P      + +  +   +E I ++K  G      
Sbjct: 270 IPYLIKSGPIRLKQIINNLISNAIKFTPEGGMVTLEMLYELDTDELIVNVKDTGIGI-PE 328

Query: 162 EKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    I     +             +       LA   +  L  +  +      +  + 
Sbjct: 329 EAQKSIFHPFQQASKSIAGKYGGTGLGLSISKKLADLLEGELHFDSKEGEGTTFTLTIP 387


>gi|116074035|ref|ZP_01471297.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Synechococcus sp. RS9916]
 gi|116069340|gb|EAU75092.1| Periplasmic Sensor Signal Transduction Histidine Kinase
           [Synechococcus sp. RS9916]
          Length = 485

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 58/235 (24%), Gaps = 24/235 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLS--- 56
           M + +  + ++        S I H+  +P+  I   ++ +L+      E  +        
Sbjct: 249 MVERLRRSAANQK---QFASTISHEFRTPLTVISGFIQSVLNRSKDLAEPQRRALGIADL 305

Query: 57  -----SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
                +      L   R              L    +             +     ++D 
Sbjct: 306 EVLRLNRMLSDLLDLSRADNHQLAIRQEAFELIPSLEHALRLARAAHSNPIGDNLTELDN 365

Query: 112 ------SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      + + NL   A    P    +T+ V  S    + S++  G      +   
Sbjct: 366 LTVIGDPDRLVQCIGNLIGNAAKYSPSQAPITLQVNTSPQHVVISVQDQGQGIPKNQLAR 425

Query: 163 KFTQIVDGNVESTIDS---HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +       +         +    V +L       +  E         +  L 
Sbjct: 426 IFERFTRAEGVTLPKGQSSSGLGLSIVKMLIEAMGGTVSVESTVGEGSAFNLKLP 480


>gi|94500422|ref|ZP_01306954.1| Signal transduction histidine kinase, nitrogen specific
           [Oceanobacter sp. RED65]
 gi|94427457|gb|EAT12435.1| Signal transduction histidine kinase, nitrogen specific
           [Oceanobacter sp. RED65]
          Length = 365

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 75/244 (30%), Gaps = 33/244 (13%)

Query: 2   AKNICFNLSSMD-LVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
           A++    +S  + L++       L   + H+I +P+G I  S +LL+ +    E+ +  +
Sbjct: 112 ARDRLLRISKEEELISAQATTQALVRGMAHEIKNPLGGIRGSAQLLERMLDNSELQEFTQ 171

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVD-----SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +           +    G    ++         L  +  +I        +++  +     
Sbjct: 172 IIIDEVDRLRNLVDKMLGPNKLLEREDTNIHEVLERVHSLISVESEGKVKLRRDYDPSIP 231

Query: 110 DLSRERAKILLNLFMVAHASLP-------------------RGGKVTISVQDSKNENIFS 150
           +   ++ +++  +  +A  ++                       + TI     +     S
Sbjct: 232 EFLADKEQLIQVVLNIARNAMQALLQHVSAEGSPQITLRTRTVRQFTIGHTKHRLVLHIS 291

Query: 151 LKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
           +  NG      +    +    V    +   +       + ++++  +  E         S
Sbjct: 292 IVDNGPGI-PEDIRESLFFPMVSGRAEGTGLGLSIAQSIVNQHQGIIECESEPGR-TQFS 349

Query: 211 ALLE 214
             L 
Sbjct: 350 IYLP 353


>gi|94266055|ref|ZP_01289774.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
 gi|93453377|gb|EAT03805.1| PAS:ATP-binding region, ATPase-like:Histidine kinase, HAMP
           region:Histidine kinase A-like [delta proteobacterium
           MLMS-1]
          Length = 615

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 25/220 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEV--MQLIRLSSMSAIIRLKFMRLAFGYTG 75
             + + H++ +PI +I    E L +  + +     +   +    A      +      + 
Sbjct: 373 FVANVSHELKTPITSIEGFAETLLDGALAEPEQARRFATIILEQARRLHAIVEDLLSLSR 432

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG----------------EKIDLSRERAKIL 119
                       Q +     +   V V                              + L
Sbjct: 433 IEQEGRRREVPLQNLPLLETLRAAVAVCAERAAVKKMPLTVEGPEALRAWINPALLEQAL 492

Query: 120 LNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------E 173
           +NL   A      GG++T+S   +  E +  ++  G     PE  ++I +          
Sbjct: 493 VNLIDNAIKYGKAGGEITVSAATAAGEILIGVRDRGPGI-PPEALSRIFERFYRVDKARS 551

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
           +++    +    V  +A  +  R+      +   + +  L
Sbjct: 552 TSLGGTGLGLAIVKHIAQVHHGRIEVSSRPEEGTIFTIHL 591


>gi|33466074|gb|AAQ19476.1| histidine kinase J7 [Emericella nidulans]
          Length = 1297

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
           +       + +L     +   + + H+I +P+  I    +L LD   ++    +++ +  
Sbjct: 708 QRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYTREMLNVVH 767

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQ 101
             A   L  +      +    + + +  I   +   +                    +V 
Sbjct: 768 NLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVD 827

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKIN 154
            +     I       +I+LNL   A                       ++    FS+   
Sbjct: 828 NTVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAANEYAFEFSVSDT 887

Query: 155 GNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G               Q  DG+         +       L +     +       H    
Sbjct: 888 GIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTF 947

Query: 210 SAL 212
              
Sbjct: 948 HFT 950


>gi|77460593|ref|YP_350100.1| periplasmic sensor Signal transduction histidine kinase
           [Pseudomonas fluorescens Pf0-1]
 gi|77384596|gb|ABA76109.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Pseudomonas fluorescens Pf0-1]
          Length = 475

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 65/216 (30%), Gaps = 4/216 (1%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + I   L+     + L S I HD+ +PI  +   +ELL++  ++ +  + +    +  
Sbjct: 260 MRERISRYLTE---RSQLFSAISHDLRTPITRLRLRVELLEDETLQTKFGRDLDELELLV 316

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L+ ++    +       +       V                        +   +  
Sbjct: 317 KGALQCVKDTDIHENIEPVDLNHVLDCLVEPYLAPAGNGRVTQQGRALAAYPGKPLALKR 376

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-ESTIDSH 179
            +  +   +L  G    + + D ++  +  +   G                        +
Sbjct: 377 CIGNLIDNALKYGQNAHLHIDDDESAFVLHVDDEGPGVPEQRLEQVFEPHFRLAGQQQGY 436

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            +       +AH +   +  + + +  + ++  L +
Sbjct: 437 GLGLGIARNIAHSHGGEVTLQNLREGGLRVTLQLPR 472


>gi|27379598|ref|NP_771127.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
 gi|27352750|dbj|BAC49752.1| two-component sensor histidine kinase [Bradyrhizobium japonicum
           USDA 110]
          Length = 391

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 73/239 (30%), Gaps = 28/239 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM--QLIRLSSM 58
           M + +    ++  ++A L + + H+I +P+  I  + +LL++    ++ M  +LI   + 
Sbjct: 127 MDRQLTHRSAARSVIA-LAAMLAHEIKNPLSGIRGAAQLLEQQASSEDRMLTRLICDEAD 185

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------L 111
             +  +  M +       V   + +  +   ++          + +  +           
Sbjct: 186 RIVTLVDRMEVFGDERPVVRGPVNIHSVLDHVKRLAQSGFARNIRFIEDYDPSLPPVLAN 245

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTIS----------------VQDSKNENIFSLKING 155
             +  ++ LNL   A  +L       I                          F ++ NG
Sbjct: 246 QDQLIQVFLNLVKNAAEALIDVPDAEIQLTTAFRPGVRLSVPGQKSRVSLPLEFCVRDNG 305

Query: 156 NLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +    + D  V +      +    V  +  ++   +  E           L+ 
Sbjct: 306 PGV-PDDLLPNLFDPFVTTKQTGSGLGLALVAKIVGDHGGIIECESQPRK-TTFRVLMP 362


>gi|332142546|ref|YP_004428284.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327552568|gb|AEA99286.1| aerobic respiration control sensor protein ArcB [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 784

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 54/244 (22%), Gaps = 32/244 (13%)

Query: 3   KNICFNLSSMDLVA-------LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           +++     + +  A          + I H++ +P+  I     +L +  + DE    +  
Sbjct: 267 RDMTERKQAENAAAKASTDKTRFIATISHELRTPLNGIVGLSRMLRDTELSDEQFSWVST 326

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKR 99
              SAI                   + L      ++DF                      
Sbjct: 327 IYASAITLGNIFNDIIDLDKLDRDKLELSLKTISLKDFTEELSSIIRLLAADKQLELKTS 386

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKV----TISVQDSKNENIFSLKING 155
           +                +IL N+   A     +G       +      K    F ++  G
Sbjct: 387 INEPLPRLVEIDGTRLRQILWNILFNAVKFTQKGHVSLSVSSTKPDGDKAYVTFVIEDTG 446

Query: 156 NLARFPEKFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                 E              D        I       +       +     +       
Sbjct: 447 VGIPESEIDKIFAMYYQVDHPDHQSATGTGIGLAICKQMVDLMNGEIHVSSKEGKGTRFE 506

Query: 211 ALLE 214
            +L 
Sbjct: 507 IVLP 510


>gi|121605100|ref|YP_982429.1| PAS/PAC sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
 gi|120594069|gb|ABM37508.1| multi-sensor signal transduction histidine kinase [Polaromonas
           naphthalenivorans CJ2]
          Length = 448

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           ++++I     +  +     + + H+I +P+  +   +E L    ++              
Sbjct: 200 LSRDITALEQAEAMRRDFVANVSHEIRTPLTVVSGFIETLQTFPLKKPERDRYLCLMAQQ 259

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS----------------- 103
             R++ +         ++     G  E      +      +                   
Sbjct: 260 SQRMQTLVDDLLTLSRLEGSPLPGAQEWSATKSLFAQCEQEARALSGVIAPQGHQLVFEP 319

Query: 104 -WTGEKIDLSRERAKILLNLFMVAHASLPRGG-KVTISVQDSKNENIFSLKINGNLARFP 161
               E   + RE    L NL   A    P  G         +     F ++ +G     P
Sbjct: 320 GPACEIAGIQREICSALSNLVTNAVRYTPEAGLIRVSWTLLADGRGEFRVRDSGPGI-AP 378

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   ++ +                 +    V  +A  +  +L  E         S +  
Sbjct: 379 EHLPRLTERFYRVDRSRSRETGGTGLGLAIVKHVAQRHGAQLRIESQVGQGSCFSIIFP 437


>gi|67925200|ref|ZP_00518568.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
 gi|67852959|gb|EAM48350.1| Response regulator receiver:ATP-binding region,
           ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
           watsonii WH 8501]
          Length = 840

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 61/240 (25%), Gaps = 26/240 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV------GIEDEVMQLIR 54
           +A      +    L     + I H++ SP+ A+     LL E         +    QLI 
Sbjct: 328 LAAKNADLVQLNRLKDEFLACISHELKSPLTAVVGLSSLLQEEKIGNLNSRQVHYAQLIY 387

Query: 55  LSSMSAIIRLKFMRLAFG--------YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT- 105
            S    +  +  +                 V+           I +         V ++ 
Sbjct: 388 RSGRQLMTLVNDLLDLTRLETGQLKLSFNPVNIREICQRAYHSITEKYQSKTEKPVDFSL 447

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
                    +       ++L++L   A      GGK+ + V    +   F++   G    
Sbjct: 448 EIEPELEHLLADELRLHQMLVHLLDNAMKFTQTGGKIGLKVSRWSDWLAFNVWDTGIGIP 507

Query: 160 FPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +                  +   +       LA  +   +            + LL 
Sbjct: 508 EESQHLIFQKFQQLENPLTRQFEGTGLGLVLTQRLARAHGGDISFVSKAGQGSQFTLLLP 567


>gi|67531559|ref|XP_662083.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4]
 gi|40741632|gb|EAA60822.1| hypothetical protein AN4479.2 [Aspergillus nidulans FGSC A4]
          Length = 1300

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 60/243 (24%), Gaps = 33/243 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
           +       + +L     +   + + H+I +P+  I    +L LD   ++    +++ +  
Sbjct: 708 QRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYTREMLNVVH 767

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQ 101
             A   L  +      +    + + +  I   +   +                    +V 
Sbjct: 768 NLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVD 827

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKIN 154
            +     I       +I+LNL   A                       ++    FS+   
Sbjct: 828 NTVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAANEYAFEFSVSDT 887

Query: 155 GNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G               Q  DG+         +       L +     +       H    
Sbjct: 888 GIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTF 947

Query: 210 SAL 212
              
Sbjct: 948 HFT 950


>gi|332969534|gb|EGK08553.1| two component sensor histidine kinase [Desmospora sp. 8437]
          Length = 443

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 19/235 (8%), Positives = 63/235 (26%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDE-----VMQLIRL 55
           + K+        +    + + + HD+ +P+ A+   L+ L++   +        +++ + 
Sbjct: 204 LQKSHRKQAELEEDRRFMIAAVAHDLRTPLFALRGYLDGLEQGIAQTPEKTAKYLRVCKE 263

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-----------IEDFIAVDKRVQVSW 104
            +      ++ +            L       Q+                 +      + 
Sbjct: 264 KTAQLDRLVEDLFTFTKMEYLETKLNHKTVDLQLILRKSIDSLSPPARQKHISISNHFAD 323

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                  +    + + NL   A    P  G++ +      ++  F+++  G      E  
Sbjct: 324 DCIISGDTHLLERAINNLLDNAVRHTPTEGEIVVQCYKDGDKVKFTIRDTGPGFSSEELQ 383

Query: 165 TQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          +     +       +   +   L      +   +L+  + 
Sbjct: 384 RVFEPLYRGEVSRSRSTGGSGLGLTISQRIIRRHGGELSIRNHSEGGALLTGWIP 438


>gi|332877335|ref|ZP_08445083.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332684718|gb|EGJ57567.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 781

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 300 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 359

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++               
Sbjct: 360 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDKERII 419

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 420 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 478

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 479 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 519


>gi|325110130|ref|YP_004271198.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
 gi|324970398|gb|ADY61176.1| response regulator receiver sensor hybrid histidine kinase
           [Planctomyces brasiliensis DSM 5305]
          Length = 538

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 68/238 (28%), Gaps = 27/238 (11%)

Query: 3   KNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS---- 57
           KN      S +   + L   I H+I +P+ A+    ++L +  + D+   L+ +      
Sbjct: 143 KNSERAADSANRAKSALIGNISHEIRTPMTAVLGLCDVLLQSSLNDDQRNLLSMIRDNGS 202

Query: 58  ---MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR---------VQVSWT 105
                    L   ++           I L D    +   + V                  
Sbjct: 203 YLVEIVNDLLDISKMEADMLEIKPLAINLRDFLDDLISIMGVRANENSTTLDVGFADDVP 262

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKV---TISVQDSKNENIFSLKINGNLARFPE 162
                      +ILLNL   A    P G        +  DS+N   F ++ NG      +
Sbjct: 263 EWIFADPIRLRQILLNLLSNAIKFTPNGKVRLEAQNAGNDSQNLIRFVVEDNGCGIPQED 322

Query: 163 KFTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               I    ++S  D         +       L      R+  E + D     +  L 
Sbjct: 323 L-ENIFLPFMQSGTDLANRSRGTGLGLSICRRLIVAMGGRIDVESVIDEGSSFTITLP 379


>gi|307719332|ref|YP_003874864.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
 gi|306533057|gb|ADN02591.1| autoinducer 2 sensor kinase/phosphatase LuxQ [Spirochaeta
           thermophila DSM 6192]
          Length = 1078

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 66/241 (27%), Gaps = 31/241 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+      S     A L S + H+I +P+ AI    +LL    +  EV + + +   SA 
Sbjct: 559 ARRQAEEASRAK-SAFLAS-MSHEIRTPLNAITGMSDLLLLSRVSPEVEEGLAIIKDSAG 616

Query: 62  IR----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------------WT 105
                    + L+    G ++          ++     + +    +              
Sbjct: 617 TLLALINDILDLSRIEAGRIELERIPLRFPDLVRHTWEMFRPQAETKGLSFELRLSEGLP 676

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRG----GKVTISVQDSKNENIFSLKINGNLARFP 161
                      +IL+NL   A      G          + D   E    ++  G     P
Sbjct: 677 PVVNGDPVRIRQILINLLSNALKFTEEGGVTLSVTGHRMYDRDWEVELVVEDTGIGI-PP 735

Query: 162 EKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
           EK  +I +        +        +       LA      ++               +L
Sbjct: 736 EKLERIFEPFTQADSSITRRYGGTGLGLSISRQLAEMMGGTIVVSSEVGRGSTFVCRIVL 795

Query: 214 E 214
           E
Sbjct: 796 E 796


>gi|302188164|ref|ZP_07264837.1| PAS [Pseudomonas syringae pv. syringae 642]
          Length = 691

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 71/235 (30%), Gaps = 30/235 (12%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL----------SSMS 59
             MD V  L   I HD  + +  I  SLEL+ +   +  V  + R           ++  
Sbjct: 307 QKMDAVGQLTGGIAHDFNNLLAGISGSLELITKRLAQGRVGDVDRYVSVAQGAVRRAASL 366

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L F R         D    + D+E++I   +  +  ++V    +      + A++ 
Sbjct: 367 THRLLAFSRRQTLSPRVTDVNGLIHDMEELITRTVGPEIDIKVIAQNDLWPALIDHAQLE 426

Query: 120 ---LNLFMVAHASLPR--------------GGKVTISVQDSKNENIFSLKINGNLARFPE 162
              LNL + A  ++P                         +       +   G     P+
Sbjct: 427 SSLLNLCLNARDAMPNGGRIVIETANASLEECTDPDHGIPAGEHLSIRVTDTGIGM-SPD 485

Query: 163 KFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              +  +    +        +    V     ++  ++  E ++     +   L +
Sbjct: 486 IAAKAFEPFFTTKAIGAGTGLGLSMVYGFVRQSGGQIRVESVEGQGTSVVMHLPR 540


>gi|297199601|ref|ZP_06916998.1| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
 gi|297147445|gb|EDY57506.2| two-component system sensor kinase [Streptomyces sviceus ATCC 29083]
          Length = 1376

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 70/267 (26%), Gaps = 54/267 (20%)

Query: 2    AKNICFNLSSMDL----------VALLC----------SRICHDIISPIGAIHNSLELLD 41
             ++    +   +L           ALL           + + H++ +P+ ++     LL 
Sbjct: 909  ERSDELQMQQAELQRSNAELEEKAALLATSSQYKSEFLANMSHELRTPLNSLLILARLLS 968

Query: 42   EVGIEDEVMQLIRLSSMSAII-------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFI 94
            +        Q ++ ++                + L+    G +D       + ++++   
Sbjct: 969  DNPDGHLSDQEVQFATTIHRSGSDLLQLINDILDLSKIEAGRMDVRPKKLPLIKLLDYVH 1028

Query: 95   AVDKRVQVS------------WTGEKIDLSRERAKILLNLFMVAHASL----------PR 132
            A  + + +                E     +   +IL NL   A                
Sbjct: 1029 ATFRPLTLDRGLAFEVAVGEDVPREMYSDEQRLQQILRNLLSNAIKFTASGRVELRVNRI 1088

Query: 133  GGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVI 187
                   V+DS +   F++   G      +           DG          +      
Sbjct: 1089 KDPDHRYVRDSDDVVAFAVSDTGIGIAREKLPVIFEAFQQADGTTNRKYGGTGLGLSISR 1148

Query: 188  LLAHENKIRLLPEIIDDHNVVLSALLE 214
             +A     R++ E         +  + 
Sbjct: 1149 EIAGLLGGRIVAESEPGRGSTFTLYVP 1175


>gi|302525000|ref|ZP_07277342.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. AA4]
 gi|302433895|gb|EFL05711.1| phosphate regulon sensor kinase PhoR [Streptomyces sp. AA4]
          Length = 483

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 63/248 (25%), Gaps = 36/248 (14%)

Query: 1   MAKNICFNLSSMD--LVAL---------LCSRICHDIISPIGAIHNSLELLD-----EVG 44
           +       LS ++  L A            +   H++ +P+ +I    +L       E  
Sbjct: 235 LRTAFNLMLSHIESSLAARTEANDRLRRFVADASHELRTPLTSIRGYADLFRYAAANEPE 294

Query: 45  IEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-- 102
             +  ++ IR  +    + +  + L                   + E   A     +   
Sbjct: 295 EREAHLEKIRAETARMSVLVDDLLLLARLDARDVEPPVRPQRMDLTEIAAAAADAFRAGR 354

Query: 103 ----------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
                                   ++L NL   A      G  V ++V  +    + ++ 
Sbjct: 355 PGHPLTVSIPEEPVLLHADPARLRQVLDNLLANAAVHTAAGTPVELAVTVADGMAVAAVT 414

Query: 153 INGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHN 206
             G      +   +I D                 +    V  L  E+   +  E      
Sbjct: 415 DAGPGISAAD-QQRIFDRFYRVDNSRTRAAGGTGLGLAVVHSLVVEHGGTVSLESRPGR- 472

Query: 207 VVLSALLE 214
            V +  L 
Sbjct: 473 TVFTVRLP 480


>gi|256425253|ref|YP_003125906.1| histidine kinase [Chitinophaga pinensis DSM 2588]
 gi|256040161|gb|ACU63705.1| histidine kinase [Chitinophaga pinensis DSM 2588]
          Length = 1255

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 68/235 (28%), Gaps = 26/235 (11%)

Query: 5    ICFNLSSMDLV--------ALLCSRICHDIISPIGAIHNSLELLDEVGIE---------- 46
                +S+  L           +  ++ H+I +P+  +  S++ L                
Sbjct: 1018 RKLEVSAARLAKSEREGAWREMARQVAHEIKNPLTPMKLSIQYLQRAIDNDAPNVKQLSK 1077

Query: 47   ---DEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                 +++ I   +  A     F R+    +  +     L  +  + +            
Sbjct: 1078 NVAHTLVEQIEHLANIASDFSAFSRIDEANSEVLLLNEVLHSLRDLYQIHDNFSMHFPPP 1137

Query: 104  W-TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN---ENIFSLKINGNLAR 159
                       +  ++  NL   A  +LP G +  +++  ++      + S++ NG    
Sbjct: 1138 GKAFYVFADKTQMNRLFTNLLQNAVQALPEGREGNVTIAMTEQEEGWVVVSVEDNGEGI- 1196

Query: 160  FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             PE   +I   N  +      +       +  + +  +  E            L 
Sbjct: 1197 PPEIQPKIFVPNFTTKNSGTGLGLAMCKNIVEQARGEIWFETQLTVGTTFYVRLP 1251


>gi|298490818|ref|YP_003720995.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
 gi|298232736|gb|ADI63872.1| multi-sensor signal transduction histidine kinase ['Nostoc azollae'
           0708]
          Length = 499

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/236 (9%), Positives = 63/236 (26%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDEVMQLI 53
           + + +        L +L  S + H+  +P+  I  ++EL++       E        ++ 
Sbjct: 258 LEQALKKEQELNRLNSLFISTVSHEFRNPLAMIQTAVELIEIQGKNLTETKKNTYFTRIY 317

Query: 54  RLSSMSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
                   +    + +      +     V   +     + + E     +   ++ +    
Sbjct: 318 DAVQSMEKLMEDVLFMGKAEADYLGHNPVSIKLDNFCRDLIEEFTFIKNSSHKIIFNCNS 377

Query: 109 IDLSRER-----AKILLNLFMVAHASLPRGGKVTIS--VQDSKNENIFSLKINGNLARFP 161
                         + +NL   A      G ++  +     +    IF ++  G      
Sbjct: 378 HHTDAMMNERLLHYLFINLLSNAVKYSHPGSEIQFNLSCDLTTGVAIFEIQDQGIGIPKL 437

Query: 162 EKFTQIVDGNVEST---IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++          S    I  + +    V      +   +     +      +  L 
Sbjct: 438 DQNRIFDSFFRASNVQSIHGNGLGLVVVKRCVDAHNGEINISSQEGMGTTFTVTLP 493


>gi|253699892|ref|YP_003021081.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
 gi|251774742|gb|ACT17323.1| PAS/PAC sensor hybrid histidine kinase [Geobacter sp. M21]
          Length = 869

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 72/242 (29%), Gaps = 33/242 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQLIRLSSM 58
               L +  + +L  L   + HD  + + AI  +++L    ++E       ++ I  ++M
Sbjct: 491 EQQMLHAQKMESLGVLAGGVAHDFNNILMAIIGNVDLSLMKIEEASPITANLRNIEKAAM 550

Query: 59  SAIIRLKFMRLA----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            A    K M             +D    +  +  ++E  +  +  + +        +  +
Sbjct: 551 RAADLAKQMLAYSGKGKFVIEKLDLNRLIEKLHPILEPSLPTNAVLILKLHKPLPMIEAD 610

Query: 115 ---RAKILLNLFMVAHASLPRGGKVTISVQDSK-------------------NENIFSLK 152
                +I++NLFM A  +L   G   I                         +  +  + 
Sbjct: 611 ANQMRQIVMNLFMNAVEALGDNGGKIIISTYDGVQDRESLKDVLLAETIAEGSYVLLEIT 670

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G      E   ++ D    +      +    V  +   +K  +              L
Sbjct: 671 DTGCGM-EEEALEKVFDPFFTTKFTGRGLGLAAVHGIIRGHKGGIRISSEPGKGSSFQVL 729

Query: 213 LE 214
           L 
Sbjct: 730 LP 731


>gi|218779274|ref|YP_002430592.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760658|gb|ACL03124.1| PAS/PAC sensor hybrid histidine kinase [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1016

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 70/241 (29%), Gaps = 32/241 (13%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------GIEDEVMQLIR 54
               L +  + A+  L   I HD  + +  I    ++L E          + DE+++   
Sbjct: 632 EAQLLQARKMEAIGTLAGGIAHDFNNILHPIIGYTQMLMEEHKGRESTTEVLDEILRAAA 691

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDL 111
            +       L F R +      VD    + +   +++  I     V+ +     G     
Sbjct: 692 RAKELVSQILTFGRRSSEAPSLVDLSAVVKESLSLLKGSIPSTIEVKATLPEADGGVFGN 751

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTI----------------SVQDSKNENIFSLKING 155
           S +  ++++NL   A+ ++   G V                             S+   G
Sbjct: 752 SSQLHQMVMNLCTNAYQAMKNMGGVMTIRLQKVSLNGDGGALAPNLPKGYYQKLSVSDTG 811

Query: 156 NLARFPEKFTQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     +I +    +    +   +    V  +   ++  +      +   +    L
Sbjct: 812 PGM-SKAVTERIFEPYFTTKDVGEGTGMGLAMVHSIVKSHQGEICVHSKLNRGALFEVYL 870

Query: 214 E 214
            
Sbjct: 871 P 871


>gi|160889369|ref|ZP_02070372.1| hypothetical protein BACUNI_01792 [Bacteroides uniformis ATCC 8492]
 gi|156861376|gb|EDO54807.1| hypothetical protein BACUNI_01792 [Bacteroides uniformis ATCC 8492]
          Length = 781

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 300 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 359

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++               
Sbjct: 360 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDKERII 419

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 420 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 478

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 479 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 519


>gi|149921773|ref|ZP_01910219.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Plesiocystis pacifica
            SIR-1]
 gi|149817334|gb|EDM76808.1| Serine/Threonine protein kinase and Signal Transduction Histidine
            Kinase (STHK) with GAF sensor [Plesiocystis pacifica
            SIR-1]
          Length = 1889

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 56/238 (23%), Gaps = 27/238 (11%)

Query: 3    KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLSSM 58
            +        ++ +  L S + H+I +P+  I N  EL+     + E +      I   + 
Sbjct: 1647 EAKNRQQQRLESIGTLASGVAHEINNPVQGILNYAELVRSHPDDRETVLEFTDEISTEAK 1706

Query: 59   SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDLS 112
               + ++ +                 +         +          + V       +L 
Sbjct: 1707 RVAVIVRNLLAFSRQEQDRKLERVSVEAIVQGTLSLLRAVLRKDQVTLSVELDPALPELR 1766

Query: 113  RERAKILLNLFM---VAHASLPRGGKVTISVQDSKN-----------ENIFSLKINGNLA 158
                +I   +      A  +L          +                    ++  G   
Sbjct: 1767 CRPQQIQQIVMNLVTNARDALNERYAGYDPGKTIDILASAFEREGAGWIRIEVRDAGAGM 1826

Query: 159  RFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +I D    +    +   +       +  E+   L  E   D        L 
Sbjct: 1827 -PEHVRARIFDPFYTTKGRDNGTGLGLSVSHGIVTEHGGELSVESAVDEGTRFFLDLP 1883


>gi|187930656|ref|YP_001901143.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ralstonia pickettii 12J]
 gi|187727546|gb|ACD28711.1| osmosensitive K+ channel signal transduction histidine kinase
           [Ralstonia pickettii 12J]
          Length = 938

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 57/234 (24%), Gaps = 21/234 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR------- 54
           A++    + S  L   L + + HD+ +P+  +    E L         +Q          
Sbjct: 691 ARDALVRIESERLRNSLLAAVSHDLRTPLTGLVGMAETLLRAQPPLPPLQAEAAAAIGQQ 750

Query: 55  --LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT----GEK 108
                      L   RL             + ++         +     V          
Sbjct: 751 AQRMRTMVTNLLDMARLQNQDVKLRLEWQSVEELVGAALQANPLPDHRVVVDHLAALPLI 810

Query: 109 IDLSRERAKILLNLFMVAHASLP-----RGGKVTISVQDSKNENIFSLKINGNLARF--- 160
                   ++L NL   A    P     R     +  +   NE    ++ +G        
Sbjct: 811 RCDGPLMERVLSNLLENAGKFAPAGTEVRISGEIVHDEARGNELRLRVRDHGPGVPAGSV 870

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              F +   G  ES      +       +   +  R+  E   D        L 
Sbjct: 871 QTIFEKFTRGEKESATTGVGLGLAVCEAIVSAHHGRIWVEAPADGGACFVVALP 924


>gi|90023014|ref|YP_528841.1| two-component sensor kinase CbrA [Saccharophagus degradans 2-40]
 gi|89952614|gb|ABD82629.1| Two-component sensor kinase CbrA [Saccharophagus degradans 2-40]
          Length = 1000

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 66/231 (28%), Gaps = 22/231 (9%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
               + S  L ++  L + + H+I +P+  I    + +     + E++   +        
Sbjct: 750 EQELVHSERLASIGRLAAGVAHEIGNPVTGIACLAQNMKYETDDPEILDTAQQILSQTDR 809

Query: 63  RLKFMRLAFGYTG-------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
             + +     ++                +      ++  +  +   V     V    + +
Sbjct: 810 VSRIVHSLVSFSHAGQQKDEELHAVNLRECAQEAINLLALQIEKKQVCFHNSVDEAIQVV 869

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD 169
             S+   +I +NL   +  +      VTI           S+   G      E   ++++
Sbjct: 870 ADSQRLIQIFVNLLSNSRDASEPDTNVTIEASQEGRTTTISVTDEGPGIPL-EIRDRVLE 928

Query: 170 GNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDD----HNVVLSALLE 214
               +    +   +    V  +  +++  L      D            L 
Sbjct: 929 PFFTTKEPGEGTGLGLAMVYSIVEDHQGTLDIVSPVDLVLQKGTKFVIKLP 979


>gi|21425308|emb|CAC79243.1| nitrogen regulation protein B [Pseudomonas stutzeri]
          Length = 360

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 66/234 (28%), Gaps = 25/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                LS  +   +L   + H+I +P+G I  + +LL     E+ +     +    A   
Sbjct: 121 KEEAQLSKQETTKMLVRGLAHEIKNPLGGIRGAAQLLARELPEEHLKDYTEVIIEEADRL 180

Query: 64  LKFMRLAFGYTGS-----VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +    G          +    L  +  +IE        +   +     ++  +R ++
Sbjct: 181 RNLVDRMLGSNKLPSLAMTNIHEVLEHVASLIEAECQGSIILVRDYDPSIPEVLMDREQM 240

Query: 119 LLNLFMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +  +   ++                      + TI     +      +  NG     
Sbjct: 241 IQAVLNIMRNAMQALAGQNELGLGRLTLRTRTLRQFTIGHIRHRLVARIEIIDNGPGI-P 299

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    +    V    D   +       +  +++  +  E    H  V S  L 
Sbjct: 300 AELQNTLFYPMVSGRPDGTGLGLAITQNIISQHQGLIECESHPGH-TVFSIFLP 352


>gi|92117002|ref|YP_576731.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
 gi|91799896|gb|ABE62271.1| periplasmic sensor signal transduction histidine kinase
           [Nitrobacter hamburgensis X14]
          Length = 775

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 62/238 (26%), Gaps = 25/238 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL--------LDEVGIEDEVMQLI 53
           AK       +    +   + + H++ +P+ AI    E+        L      +    ++
Sbjct: 526 AKEKDRAEDANRAKSKFLANMSHELRTPLNAIIGFSEIMSNGMFGTLGSEKYSEYCHDIL 585

Query: 54  RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLG----------DIEQVIEDFIAVDKRVQVS 103
                   +    + ++    G +   +              +         +   V++ 
Sbjct: 586 TSGQYLLEVINDVLDMSKIEAGRMKLDMEPLDLSRTLAESLRVVTGRTSDKKLTFDVRID 645

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    R   +I++NL   A    P GG+V    Q   N    ++   G        
Sbjct: 646 DDIAITADHRAVKQIIVNLLSNAVKFTPDGGRVMARSQVFANSVALTIADTGIGIAPHSL 705

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             ++             T     +       L + +   +          V+   L +
Sbjct: 706 R-KLGKPFEQVESQLTKTYAGSGLGLAIAKSLVNLHGGSMRLRSKPGTGTVVRVTLPR 762


>gi|808104|gb|AAA82924.1| regulator of multiple functions [Pseudomonas tolaasii]
          Length = 909

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 64/242 (26%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +    +  +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELSPRHVDYLGTIEKSA 330

Query: 61  IIRLKFMRLAFGYTG-----------SVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++       +      V    
Sbjct: 331 DNLLGIINEILDFSKIEAGKLVLDSVPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +IL NL   A      G  V  ++ + +     +   S++  G     
Sbjct: 391 PLAVVGDPLRLKQILTNLISNAIKFTREGTIVARAMVEDEEEDSVQLRISVQDTGIGLSN 450

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +           D ++        +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFTEADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLNL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|15803908|ref|NP_289944.1| osmolarity sensor protein [Escherichia coli O157:H7 EDL933]
 gi|15833500|ref|NP_312273.1| osmolarity sensor protein [Escherichia coli O157:H7 str. Sakai]
 gi|168747119|ref|ZP_02772141.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753156|ref|ZP_02778163.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759428|ref|ZP_02784435.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4501]
 gi|168765751|ref|ZP_02790758.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772705|ref|ZP_02797712.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779487|ref|ZP_02804494.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785208|ref|ZP_02810215.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC869]
 gi|168797174|ref|ZP_02822181.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC508]
 gi|195934893|ref|ZP_03080275.1| osmolarity sensor protein [Escherichia coli O157:H7 str. EC4024]
 gi|208807616|ref|ZP_03249953.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813517|ref|ZP_03254846.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819716|ref|ZP_03260036.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4042]
 gi|209397426|ref|YP_002272839.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325191|ref|ZP_03441275.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795319|ref|YP_003080156.1| osmolarity sensor protein [Escherichia coli O157:H7 str. TW14359]
 gi|261224685|ref|ZP_05938966.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli O157:H7 str. FRIK2000]
 gi|261254420|ref|ZP_05946953.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli O157:H7 str. FRIK966]
 gi|12518031|gb|AAG58505.1|AE005562_8 protein histidine kinase/phosphatase sensor for OmpR, modulates
           expression of ompF and ompC [Escherichia coli O157:H7
           str. EDL933]
 gi|13363720|dbj|BAB37669.1| protein histidine kinase/phosphatase EnvZ [Escherichia coli O157:H7
           str. Sakai]
 gi|187771797|gb|EDU35641.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018349|gb|EDU56471.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002223|gb|EDU71209.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359046|gb|EDU77465.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364652|gb|EDU83071.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369894|gb|EDU88310.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374410|gb|EDU92826.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC869]
 gi|189379930|gb|EDU98346.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC508]
 gi|208727417|gb|EDZ77018.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734794|gb|EDZ83481.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739839|gb|EDZ87521.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4042]
 gi|209158826|gb|ACI36259.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           EC4115]
 gi|209747474|gb|ACI72044.1| protein histidine kinase/phosphatase EnvZ [Escherichia coli]
 gi|209747476|gb|ACI72045.1| protein histidine kinase/phosphatase EnvZ [Escherichia coli]
 gi|209747478|gb|ACI72046.1| protein histidine kinase/phosphatase EnvZ [Escherichia coli]
 gi|217321412|gb|EEC29836.1| osmolarity sensor protein EnvZ [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594719|gb|ACT74080.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli O157:H7 str. TW14359]
 gi|320191585|gb|EFW66235.1| Osmolarity sensory histidine kinase EnvZ [Escherichia coli O157:H7
           str. EC1212]
 gi|326337633|gb|EGD61468.1| Osmolarity sensory histidine kinase EnvZ [Escherichia coli O157:H7
           str. 1044]
 gi|326344616|gb|EGD68365.1| Osmolarity sensory histidine kinase EnvZ [Escherichia coli O157:H7
           str. 1125]
          Length = 450

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|296391368|ref|ZP_06880843.1| two-component sensor PilS [Pseudomonas aeruginosa PAb1]
          Length = 530

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 63/219 (28%), Gaps = 19/219 (8%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL---- 64
           M L  L  L + I H+I +P+GAI ++ +LL E   ++    +L ++    +        
Sbjct: 305 MKLAGLGRLTAGIAHEIRNPLGAISHAAQLLQESEELDAPDRRLTQIIQDQSKRMNLVIE 364

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSRERAKI 118
              +  R        +D    L          +  D  + +       +      +  ++
Sbjct: 365 NVLQLSRRRQAEPQQLDLKEWLQRFVDEYPGRLRNDSELHLQLGAGDIQTRMDPHQLNQV 424

Query: 119 LLNLFMVAHASLPRGGKVTISV-----QDSKNENIFSLKINGNLARFPEKFTQIVDGNVE 173
           L NL         +                 +  +  +  +G      +    + +    
Sbjct: 425 LSNLVQNGLRYSAQAHGRGQVWLSLARDPESDLPVLEVIDDGPGVPADKLNN-LFEPFFT 483

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +      +  Y    L   N+ R+     ++        
Sbjct: 484 TESKGTGLGLYLSRELCESNQARIDYRNREEGGGCFRIT 522


>gi|269102668|ref|ZP_06155365.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162566|gb|EEZ41062.1| hypothetical protein VDA_002094 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 693

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 68/234 (29%), Gaps = 24/234 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+    + +S    +   + + H+I +P+ A+   ++ L + G+  E M+ ++    SA 
Sbjct: 318 ARKQAESANSAK--SQFLAMMSHEIRTPLNAVLGLMDTLADSGLRQEQMEWVKQMDQSAQ 375

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWT 105
           + L  +      +        L + E  I D I +                   +  +  
Sbjct: 376 LLLTIINDILDLSKIESGNFELTNGEMSITDCINLVVNQLSEQARNKNILLQAEIDQTVP 435

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                     A+I+ NL   A      G  V +  +  ++    S+   G       +  
Sbjct: 436 SVICGDKNRIAQIMFNLIGNAIKFTSTGS-VRVLARRVEDNIEISVIDTGIGIAKQAQNN 494

Query: 166 QIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +              +       L  +   ++  +           +L 
Sbjct: 495 LFHPFHQADSSITRKYGGTGLGLAISKHLISKMNGKIELDSSLGIGSCFKVILP 548


>gi|238063370|ref|ZP_04608079.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. ATCC 39149]
 gi|237885181|gb|EEP74009.1| multi-sensor signal transduction histidine kinase [Micromonospora
           sp. ATCC 39149]
          Length = 1347

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 60/216 (27%), Gaps = 22/216 (10%)

Query: 20  SRICHDIISPIGAIHNSLE-LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSV- 77
           + + H+  +P+  +   LE LL +  + +  +  + +   +A+  LK +     ++    
Sbjct: 375 ANVSHEFRTPLTLVLGPLEDLLADQTLPEAHIDQLTVMHRNALRLLKLVNTVLDFSRLES 434

Query: 78  -------DSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID-------LSRERAKILLNLF 123
                            ++   F +  +RV +    +                KI+LNL 
Sbjct: 435 GRLAAHYQPTDLADYTARLASTFRSATERVGLRLAVDCPPLPAPVFVDRDMWEKIVLNLV 494

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTIDS 178
             A      G         +       +   G      E        +        T + 
Sbjct: 495 ANAVKFTFDGEVRVRIRAVNGA-ARLEVADTGVGIAPEELPHVFKRFHRVPGVRSRTHEG 553

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             I    V  L   +  R     + D   + +  + 
Sbjct: 554 TGIGLALVRELVEMHGGRAEVRSVVDGGSLFTVTVP 589


>gi|218706995|ref|YP_002414514.1| osmolarity sensor protein [Escherichia coli UMN026]
 gi|293406982|ref|ZP_06650906.1| envZ [Escherichia coli FVEC1412]
 gi|293412821|ref|ZP_06655489.1| osmolarity sensor protein envZ [Escherichia coli B354]
 gi|298382724|ref|ZP_06992319.1| osmolarity sensor protein envZ [Escherichia coli FVEC1302]
 gi|300898909|ref|ZP_07117208.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|331649202|ref|ZP_08350288.1| osmolarity sensor protein EnvZ [Escherichia coli M605]
 gi|331665009|ref|ZP_08365910.1| osmolarity sensor protein EnvZ [Escherichia coli TA143]
 gi|331674893|ref|ZP_08375650.1| osmolarity sensor protein EnvZ [Escherichia coli TA280]
 gi|218434092|emb|CAR15009.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli UMN026]
 gi|281180436|dbj|BAI56766.1| two-component sensor kinase [Escherichia coli SE15]
 gi|284923396|emb|CBG36490.1| two-component sensor kinase [Escherichia coli 042]
 gi|291425793|gb|EFE98827.1| envZ [Escherichia coli FVEC1412]
 gi|291468468|gb|EFF10961.1| osmolarity sensor protein envZ [Escherichia coli B354]
 gi|298276560|gb|EFI18078.1| osmolarity sensor protein envZ [Escherichia coli FVEC1302]
 gi|300357448|gb|EFJ73318.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 198-1]
 gi|330909437|gb|EGH37951.1| osmolarity sensory histidine kinase EnvZ [Escherichia coli AA86]
 gi|331041700|gb|EGI13844.1| osmolarity sensor protein EnvZ [Escherichia coli M605]
 gi|331057519|gb|EGI29505.1| osmolarity sensor protein EnvZ [Escherichia coli TA143]
 gi|331067802|gb|EGI39200.1| osmolarity sensor protein EnvZ [Escherichia coli TA280]
          Length = 450

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|254443113|ref|ZP_05056589.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
 gi|198257421|gb|EDY81729.1| response regulator receiver domain protein [Verrucomicrobiae
           bacterium DG1235]
          Length = 601

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 60/242 (24%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-EVGIEDEVMQLIRLSSMS 59
           + +      ++        S I H++ +P+  I   L+LL+ +  +  E    + L   S
Sbjct: 208 LKEERDRTEAASKAKDRFLSVISHELRTPLNPILGFLDLLEEDQALRSESKDQLELMRRS 267

Query: 60  AIIRLKFMRLAFGYTGS--------------VDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
               L  +     ++                 +    +    Q++ +   ++  V     
Sbjct: 268 GEHLLLMIDKVVDFSELDRGELTLVRNERTWAELRRDIRSRLQLLAEEKNLEFHVHCEGA 327

Query: 106 GEKID--LSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLA 158
                   +R   +I+  L   A     +G         S      +     +   G   
Sbjct: 328 ARDRLVLDNRRTLQIIDELGSNALKFTDKGSVAIALCLASGDGGRTHRLAIEVSDTGCGI 387

Query: 159 RFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                  ++ D                 +       +A      +  E         +  
Sbjct: 388 DCKAI-DRLFDPFVQEKSGWTRDAGGFGLGLSACQAIAGAMGGAIRVESEIGIGSTFTVE 446

Query: 213 LE 214
           + 
Sbjct: 447 IP 448


>gi|170682267|ref|YP_001742806.1| sensor protein KdpD [Escherichia coli SMS-3-5]
 gi|170519985|gb|ACB18163.1| sensor protein KdpD [Escherichia coli SMS-3-5]
          Length = 894

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 649 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 707

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +      +   + +S    
Sbjct: 708 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLSSPINLSLPEP 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 828 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 880


>gi|84385826|ref|ZP_00988856.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84379142|gb|EAP95995.1| putative sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 808

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 19/228 (8%), Positives = 54/228 (23%), Gaps = 23/228 (10%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            + +  +L  + + H++ +P+  +    +++ E     +  Q  ++   S    +  +  
Sbjct: 283 KANEAKSLFLATMSHELRTPMNGVLGIAQIIKEDSQSADTRQQAQIIIDSGQHLVTILND 342

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSWTGEKIDLSR 113
              ++      + L      + D +                    +  +    + I  S 
Sbjct: 343 ILDFSKVEQGKMELEYSPFSVADVVTHLDKTLTPLAEDKGLAFTIKDHIPTHIQLIGDSA 402

Query: 114 ERAKILLNLFMVAHASLP--RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN 171
              +IL NL   A       +     +            +   G      +         
Sbjct: 403 RTRQILFNLAGNAVKFTESGKVEVEFLIAPPPPPSVNILVTDTGIGIAEDKIEHIFTAFE 462

Query: 172 V-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                         +    V  L       +      +     +  L 
Sbjct: 463 QAELSTTRKFGGTGLGLSIVKQLVELMGGTITVTSRLNFGTRFAISLP 510


>gi|170736607|ref|YP_001777867.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
 gi|254249296|ref|ZP_04942616.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|124875797|gb|EAY65787.1| Signal transduction histidine kinase [Burkholderia cenocepacia
           PC184]
 gi|169818795|gb|ACA93377.1| Hpt sensor hybrid histidine kinase [Burkholderia cenocepacia MC0-3]
          Length = 1011

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 65/238 (27%), Gaps = 26/238 (10%)

Query: 2   AKNICFNLSSMDLV-ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
             +    L S +   +   + I H+I +P+ A+  +LELLD+    +     +   + +A
Sbjct: 512 RADTERALDSANRAKSTFLATISHEIRTPLNAMLGNLELLDKAPDRNREKSRLHAVTSAA 571

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRVQVSW 104
            + L  +      T      + L      I++                       V    
Sbjct: 572 RMLLDMLNNVLDMTKIEADRMTLEATSFRIDELARDIVELFEPIARAKGVALRVDVDAQA 631

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGK--VTISVQDSKNENIFSLKINGNLARFPE 162
               +       +I++NL   A     RG       +        +  +  +G      +
Sbjct: 632 ARPYVGDPLRVRQIVVNLVSNAIKFTDRGTVALSVTAPVADGTPVMIRVSDSGIGMTAAQ 691

Query: 163 KFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               + +        +        I       LA     R+  + + +        L 
Sbjct: 692 L-EHVFEPFAQADESIARRFGGTGIGLPLSNKLAESMGGRIAVDSVPNVGSTFVVSLP 748


>gi|109898566|ref|YP_661821.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
 gi|109700847|gb|ABG40767.1| multi-sensor hybrid histidine kinase [Pseudoalteromonas atlantica
           T6c]
          Length = 1143

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/215 (10%), Positives = 50/215 (23%), Gaps = 21/215 (9%)

Query: 21  RICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL 80
            + H+I +P+ AI    ++L +  IE +  + +   + SA   L  +             
Sbjct: 576 NMSHEIRTPMNAIIGFSDILLDDAIEPDQKKHLTTINKSAKSLLHLLNDILDSAKLDKGK 635

Query: 81  IGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM 124
             L                          + ++  +  +   +         ++L N+  
Sbjct: 636 FDLEMRDFSLIEEVDSVVSTLWLGASNKNLYLNVNIDPAVENQFHGAPDRIRQVLTNIVG 695

Query: 125 VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGN-----VESTIDSH 179
            A      GG              FS+   G      +              +       
Sbjct: 696 NAIKFTLEGGIDINIGVKPSGCIDFSVSDTGIGMTPEQLALVFDAFGQADASMSRRFGGT 755

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       L      ++            S  L 
Sbjct: 756 GLGTTISKQLVELMGGKISATSEFGKGSCFSFSLP 790


>gi|116749871|ref|YP_846558.1| histidine kinase [Syntrophobacter fumaroxidans MPOB]
 gi|116698935|gb|ABK18123.1| histidine kinase [Syntrophobacter fumaroxidans MPOB]
          Length = 578

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/229 (9%), Positives = 67/229 (29%), Gaps = 17/229 (7%)

Query: 2   AKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLELLDEVG--------IEDEVMQ 51
           A+       S  L     L + + H++  P+  I    +L  +            + ++ 
Sbjct: 335 ARVKEQLKHSNRLAVIGQLAAAVAHELNEPLTNILGFAQLAVKEPVLPEQVGGDLERIIA 394

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVI-EDFIAVDKRVQVSWTGEKID 110
               +       L + R        +D      +   +        +  +++  +G+++ 
Sbjct: 395 NSLHAREIVRKLLMYGRKMPERKSPIDVNKVAREALGLFEHRLDKENIELELELSGDEVR 454

Query: 111 LSRER---AKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +     +++ NL + A  ++P+GG + +       +    ++  G          +I
Sbjct: 455 VLADPAHLRQVVANLVLNAIHAMPQGGTLRVGTLLKGAQVEIVVQDTGGGISET-IKDKI 513

Query: 168 VDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +        +    V  +       +  +        +   L 
Sbjct: 514 FIPFFTTKDSHHGTGLGLPVVREIVTGLGGTITIDSAPGSGTAVLVSLP 562


>gi|332085552|gb|EGI90718.1| osmolarity sensor protein envZ [Shigella boydii 5216-82]
          Length = 447

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 232 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 291

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 292 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 349

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 350 NGWIKVSSGTEPNRAWFKVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 409

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 410 VDNHNGMLELGTSERGGLSIRAWLP 434


>gi|325498946|gb|EGC96805.1| osmolarity sensor protein [Escherichia fergusonii ECD227]
          Length = 447

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 232 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 291

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 292 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 349

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 350 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 409

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 410 VDNHNGMLELGTSERGGLSIRAWLP 434


>gi|313145985|ref|ZP_07808178.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313134752|gb|EFR52112.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 767

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 61/221 (27%), Gaps = 23/221 (10%)

Query: 16  ALLCSR------ICHDIISPIGAIHNSLELLDEVGIE------DEVMQLIRLSSMSAIIR 63
           +L+ SR      I H++ +P+ AIH   EL+ +   E      D ++Q  +  +      
Sbjct: 286 SLIASRKKAMHTITHELRTPLTAIHGYAELMQDNEEEKISGYADNILQASKRMTDMLNSL 345

Query: 64  LKFM-------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA 116
           L F        +         +    L        +   +   ++          +    
Sbjct: 346 LDFFRLDSGKEQANVRPFRLENIAELLQTEFTQQAEAKDLKLTIECPEGIILNGDNERII 405

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT---QIVDGNVE 173
           +I  NL   A      G    +   D  N     ++  G      E+          +  
Sbjct: 406 QICDNLLGNAVKFTNAGSVSLVISYD-GNRLTLVVEDTGTGMSAEEQQRVFGAFERLSNA 464

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +T D   +    V  +       +  E         +  L 
Sbjct: 465 ATQDGFGLGLSIVKQIVGMLGGTIRLESEKGEGSRFTVELP 505


>gi|255020961|ref|ZP_05293017.1| Phosphate regulon sensor protein PhoR [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969752|gb|EET27258.1| Phosphate regulon sensor protein PhoR [Acidithiobacillus caldus
           ATCC 51756]
          Length = 451

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 24/237 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED-----EVMQLIRL 55
           + ++I        +     + + H++ SP+  I   LE L +  +         ++L+  
Sbjct: 193 LFRDITRLRQLEQVRQDFVANVSHELRSPLTVIRGFLENLLDGPLGRDAEVGPQLRLMEA 252

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK------------RVQVS 103
            S      ++ +        +      L ++        +++              ++V 
Sbjct: 253 QSQRMQSLVEDLLSLARMESTEPDPQRLQELLPAELLHRSLNSLAPRIQEKALRLALEVD 312

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                +    +   I+ NL   A      GG + I+  ++  E  F+++  G+    PE 
Sbjct: 313 EDLAILAEPLDVQSIVHNLVDNAVKYSAAGGLIRIAWSETATELCFTVEDQGDGI-APEH 371

Query: 164 FTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +I +            +    +    V       + RL          V      
Sbjct: 372 LRRITERFYRVDRGRSRRVGGTGLGLAIVRHAVERYRGRLEIHSEVGRGSVFRVHFP 428


>gi|196232271|ref|ZP_03131125.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
 gi|196223639|gb|EDY18155.1| multi-sensor hybrid histidine kinase [Chthoniobacter flavus
           Ellin428]
          Length = 759

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 70/245 (28%), Gaps = 31/245 (12%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           + ++      S  + A+  L   + HD  + +  I    +LL     E   ++       
Sbjct: 372 LRQSDEKLRQSQKMEAVGRLAGGVAHDFNNLLTVITGYSDLLLRELSEANPLREDAEQIQ 431

Query: 59  S--------AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTG---E 107
                        L F R        ++    + ++  ++   I  D  ++ S+     +
Sbjct: 432 HAAARAAALTRQLLAFSRKQVLQPRVLELNGVVANMGAMLRRLIGEDIELRTSFDSLLGQ 491

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---------------KNENIFSLK 152
                 +  +++LNL + A  ++  GGK+TI   +                    + ++ 
Sbjct: 492 VKADQGQIEQVILNLAVNARDAMLHGGKLTIQTANVYLDQKSVARNRELEVGEYVMLAIS 551

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      E    + +    +        +       +  ++   +             
Sbjct: 552 DTGVGM-SEEIQAHLFEPFFSTKGVGKGTGLGLATCYGIVCQSGGDIRVYSEPGTGSTFK 610

Query: 211 ALLEK 215
             L +
Sbjct: 611 IYLPR 615


>gi|168230592|ref|ZP_02655650.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
 gi|194468737|ref|ZP_03074721.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|194455101|gb|EDX43940.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Kentucky str. CVM29188]
 gi|205334674|gb|EDZ21438.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Kentucky str. CDC 191]
          Length = 894

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|126659637|ref|ZP_01730767.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
 gi|126619083|gb|EAZ89822.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
          Length = 1070

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 19/240 (7%), Positives = 56/240 (23%), Gaps = 29/240 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSS 57
           AK      +     +   + + H++ +P+ AI    +++           + + +I  S 
Sbjct: 592 AKEQADAANRAK--SEFLASMSHELRTPLNAILGFTQVMQRDHSLKEEHKQNLDIIGRSG 649

Query: 58  MSAIIRLKF-------------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
              +  +               +         +   +      +  E  + +        
Sbjct: 650 EHLLELINDILEMTKIEAGRTTLNKTQFDLYRLLDNLESMLHLKAEEKNLQLLFEKNPDL 709

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLA 158
                    +  ++L+NL   A           R      S  +      F ++  G   
Sbjct: 710 PQYIETDEGKLRQVLINLLGNAIKFTQEGGVILRIKTSQQSPNNQAIILTFEVEDTGPGI 769

Query: 159 RFPEKFTQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              E                + +   +               +    I     + +  ++
Sbjct: 770 AIEEVDQLFEAFGQTETGRNSNEGTGLGLPISRKFVELMGGEISVSSILGRGSLFTFTIK 829


>gi|119486863|ref|ZP_01620838.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
 gi|119456156|gb|EAW37289.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
          Length = 280

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 67/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMD-----LVALLCSRICHDIISPIGAIHNSLELLD-------EVGIEDE 48
           M +     +  ++     L +   + + H+  +P+  I  S  LL+       E   +  
Sbjct: 34  MIQQHDQQMKQLEKELNNLKSRFITTVSHEFRTPLTTISFSAGLLENYSNKISEEKKQTH 93

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSL------IGLGDIEQVIEDFIAVDKRVQV 102
             ++ +       +    + +      +++          L  I             +  
Sbjct: 94  FQRIKQGIEQMTSLLEDTLIIGKLDARNLEIYLTSVNLEKLCRILVEEMQKRTNKHEIIF 153

Query: 103 SWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR 159
           S  G   +   +   +          A    P GG++   +     + IF ++  G    
Sbjct: 154 SCQGSSSEGKFDEMLLKKTTINLLSNAIKYSPGGGEIKFDLICENQQAIFKIQDQGIGIP 213

Query: 160 FPEKFTQIVDGNVEST----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   ++            I    +    V  +   +  ++  E  ++    +  +L 
Sbjct: 214 KSD-QDRLFTNYYRGKNIGNISGTGLGLSLVKHIVDLHHGKITIESEENQGTKVIVILP 271


>gi|117618265|ref|YP_855448.1| aerobic respiration control sensor protein ArcB [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117559672|gb|ABK36620.1| sensor histidine kinase/response regulator [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 770

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 54/219 (24%), Gaps = 24/219 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ +  Q ++   +SA+                  
Sbjct: 288 STISHELRTPLNGIVGLSRMLMDTPLDPKQHQQLKTIHLSAVTLGNIFNDIIDLDKLDRR 347

Query: 80  LIGLGD----------------IEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            + +                    Q  +  + +            +       ++L NL 
Sbjct: 348 RLEIAPTPIDLPAFLDELETLSRIQAEQKGLYLHFDRDGDVPQFVMADGTRLRQVLWNLV 407

Query: 124 MVAHASLPRGGKVTISVQDSKNE-----NIFSLKINGNLARFPEKFTQIVDGNVES---T 175
             A      GG     +    +        F ++  G      ++               
Sbjct: 408 GNAVKFTDEGGVTVRCLTHPADTPGKLALHFEVEDTGVGIPRAQQEKIFAMYYQVQGKKH 467

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                I       L      +L  +         +A LE
Sbjct: 468 ATGTGIGLAVSRQLVQAMGGQLYVDSDPGEGACFTAELE 506


>gi|89897647|ref|YP_521134.1| hypothetical protein DSY4901 [Desulfitobacterium hafniense Y51]
 gi|89337095|dbj|BAE86690.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 733

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 71/241 (29%), Gaps = 36/241 (14%)

Query: 9   LSSMDLV--ALLCSRICHDIISPIGAIHNS----LELLDEVGIEDEVMQLI--------- 53
           + +  +    LL S + H+I +P+  +       L+ L E G      ++          
Sbjct: 486 IQTEKMATVGLLASGVAHEINNPLAILSAHNEDLLDRLQEEGELPGKAEIEGILSIIAKQ 545

Query: 54  -RLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                      L + R        +D+   +     ++   +   K V +  +   + + 
Sbjct: 546 IERCKQVTGRLLGYARPGRHGPDRMDANNAIEQTAALLAYRLKQKKMVLIKESEPGLWVE 605

Query: 113 RE---RAKILLNLFMVAHASLPRGGKVTIS--------------VQDSKNENIFSLKING 155
            +     +++LN+   A  +   G +V +                 D  +E    ++  G
Sbjct: 606 GDENEWQQVVLNILTNAIDASAEGSQVIVRAQRVKRPLAPAEALPIDKGDEIQIEVEDQG 665

Query: 156 NLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     ++ D    +        +  +    +  + + +L  E  +     +   L
Sbjct: 666 QGISPQYLK-KVFDPFFTTKPPGQGTGLGLFVSYGIVQKMQGKLFIESTEGKGTTVRINL 724

Query: 214 E 214
            
Sbjct: 725 P 725


>gi|87311733|ref|ZP_01093848.1| probable sensory transduction histidine kinase [Blastopirellula
           marina DSM 3645]
 gi|87285517|gb|EAQ77436.1| probable sensory transduction histidine kinase [Blastopirellula
           marina DSM 3645]
          Length = 246

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/231 (10%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 3   KNICFNL-SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------EDEVMQLIRL 55
           + I   L    + +A L   + H+I +P+  I  +++LL E         E   +Q  ++
Sbjct: 11  QTINQRLLEQYNEIAQLAGSLAHEIKNPLSVIRMNMDLLAEELDPPQTSAERRALQKTKI 70

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGL--------GDIEQVIEDFIAVDKRVQVSWTGE 107
                +     +     +       +            ++ V          +      +
Sbjct: 71  VQDQCMRLQNLLDDFLRFARLRQLNLLPGSLNEQVDRVLDFVAAQAEKQGIEIVRFLDAD 130

Query: 108 KIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
              ++ +   +   L      A  ++P GG + +  Q++++         G      E  
Sbjct: 131 LPSINCDAETLYSALLNLVINAIQAMPDGGTLMVRTQETRHGVALGFIDTGCGMN-EETA 189

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             + D    +      +       +   +  R+  +         +    K
Sbjct: 190 LHMFDAFYSTKDGGSGLGLPLARKIIDAHHARIDVQSELGRGTKFTLEFPK 240


>gi|84517076|ref|ZP_01004432.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Loktanella vestfoldensis SKA53]
 gi|84508971|gb|EAQ05432.1| C4-dicarboxylate transport sensor protein DctB, putative
           [Loktanella vestfoldensis SKA53]
          Length = 584

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 65/224 (29%), Gaps = 22/224 (9%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEVGIE------DEVMQLIRLSS 57
            S  L AL  + + + H++  P+ A+   L     LL     +        +  L+    
Sbjct: 354 QSSKLAALGEMSAAVSHELNQPLAAMKTYLAGARLLLQRQRPDEALSSFQRIDDLLERMG 413

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SWTGEKIDLSR 113
                   + R        VD+   +     ++E  +       V    +     +    
Sbjct: 414 AITRQLKSYARKGSDAFEPVDTRAAVSTALAMMEPQLKTRSVNIVRTLPTEPVMIMGDRL 473

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQ-DSKNENIFSLKINGNLARFPEKFTQIVDGNV 172
              ++++NL   A  +       TI +     +     ++ NG      E   ++ +   
Sbjct: 474 RLEQVIINLLRNALDATKTSDNPTIEILLAVGDTVSLQIRDNGEGI---ENLDELFEPFY 530

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    D   +       + ++   RL      D   +    L 
Sbjct: 531 TTKQPGDGVGLGLAISSGIVNDLGGRLTARNAADGGAIFEVQLP 574


>gi|84393022|ref|ZP_00991789.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01]
 gi|84376376|gb|EAP93257.1| hypothetical protein V12B01_03918 [Vibrio splendidus 12B01]
          Length = 572

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 49/218 (22%), Gaps = 22/218 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK------------ 65
             + I H++ +P+  +  S EL+ +  +     +++   S S                  
Sbjct: 208 FVAMINHELRTPLNGLLGSAELISDTELSSSQREIVNNLSQSGEFLRTIINDLLDFSKIN 267

Query: 66  --FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR--ERAKILLN 121
              + L        D    +  I         ++  + V+               ++ +N
Sbjct: 268 AGMLDLIPKKFALHDLRNTIESIFVNRAIEKQIEFNISVASNVPSHFQGDLERITQLFVN 327

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-----ESTI 176
           L   A      G        D        ++  G         T                
Sbjct: 328 LIGNAIKFTEEGHVNVDIEWDKNQFVFS-VEDTGVGIAESAHKTLFEPFTQADNSSSRNY 386

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +   +       L       +    +       +  + 
Sbjct: 387 EGTGLGLAICRKLVALMNGVIGVTSVVGSGTTFTISIP 424


>gi|116749922|ref|YP_846609.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698986|gb|ABK18174.1| PAS/PAC sensor signal transduction histidine kinase
           [Syntrophobacter fumaroxidans MPOB]
          Length = 363

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/211 (12%), Positives = 60/211 (28%), Gaps = 16/211 (7%)

Query: 19  CSRICHDIISPIGAIHNSL------ELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            + I H+I  P+  I          + L     +   +++I          L  +R+   
Sbjct: 151 VAHIGHEIRKPLVLIGGFAGQVERCDSLRASEKDRRKLRIIMDEIKRLETLLSSLRVLTR 210

Query: 73  YTGSVDSLIGLGDIEQ------VIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFM-- 124
              S        +         +         +++   + ++I +  +  ++        
Sbjct: 211 PPSSSHKSSLSLNAVVESTLELLTPMLKDRKIQLKKDLSADRIMVHGDPNQLEQVFLNLL 270

Query: 125 -VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQF 183
             A ++L   G VTIS    K+     ++ +G      E   +I D    +  D   +  
Sbjct: 271 DNAISALRHSGTVTISSVREKDTARVVVEDDGPGI-PEELQERIFDPFFTTKPDGTGLGL 329

Query: 184 YYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +  ++   L               L 
Sbjct: 330 PICRNIIRDHGGTLTLHSSTSRGTRFIVELP 360


>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
 gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
          Length = 1133

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 62/245 (25%), Gaps = 34/245 (13%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED------EVMQLIRL 55
           A+N         L     +   H++ +P+  I    E L E   ++        + +I  
Sbjct: 434 AQNKQLT-ELDRLKDEFLANTSHELRTPLNGIIGIGEFLLEENTKNLNSITTSNLAIIVS 492

Query: 56  SSMSAIIRLKFMRLAFGYTGS--------VDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           S+      +  +                 +D  I +  +  +    +  +K +Q++    
Sbjct: 493 SARRLSNLVNDILDFSKIRYHKLELQVRAIDVRIVVESVITLNRVLVGKNKNLQLTNAIP 552

Query: 108 KIDLS-----RERAKILLNLFMVAHASLPRGG-------KVTISVQDSKNENIFSLKING 155
                         +IL NL   A      G              QD   E I  +   G
Sbjct: 553 TDLPPVLADENRLQQILYNLIANAIKFTESGKVEISASLYSPKEDQDEATEIIIMVSDTG 612

Query: 156 NLARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
                 +   +I +   +             +       L      R+  E         
Sbjct: 613 IGIPPDQL-DRIFESFEQGEGSIIRKYGGTGLGLAVTKELVELQGGRIWVESEVGVGSRF 671

Query: 210 SALLE 214
           +  L 
Sbjct: 672 NVTLP 676


>gi|308274302|emb|CBX30901.1| hypothetical protein N47_E44130 [uncultured Desulfobacterium sp.]
          Length = 471

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/242 (10%), Positives = 71/242 (29%), Gaps = 30/242 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEV--------MQL 52
           M K +      M+ + +L   I HD  + +  +    ++L +     +          + 
Sbjct: 84  MEKKL-LQAQKMEAIGVLAGGIAHDFNNILQTVLGYTQVLLQNKPSHDPDFINLKAIEES 142

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
            + +S      L F R +       D    +  I +++   +    +++++   +   ++
Sbjct: 143 AQKASSLTKQLLVFARKSESNLKPTDLNREVNKISEILSRTLPKMIKIELNLEEKLKTVN 202

Query: 113 RERAKILLNLFMVAHASLPRGGKVTISVQDSKN------------------ENIFSLKIN 154
            +  +I   +  +   +          + ++ N                    +  +   
Sbjct: 203 ADSVQIEQIIMNIGLNAAYAMSDGGRLIIETGNVTSYDKISNPELGLNREGYVLLRISDT 262

Query: 155 GNLARFPEKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           G      E    I +    +        +    V  L   +K  ++     DH  + +  
Sbjct: 263 GIGM-DEETQKHIFEPFFTTKGADCGTGLGLAMVYGLVESHKGHIICCSKPDHGTMFTIY 321

Query: 213 LE 214
           L 
Sbjct: 322 LP 323


>gi|303240404|ref|ZP_07326922.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
 gi|302592131|gb|EFL61861.1| integral membrane sensor signal transduction histidine kinase
           [Acetivibrio cellulolyticus CD2]
          Length = 465

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/215 (10%), Positives = 62/215 (28%), Gaps = 18/215 (8%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVM----QLIRLSSMSAIIRLKFMRLAFGY 73
             S + H++ +P+ AI    E + +   ++  +    + + + +      +  + L    
Sbjct: 246 FVSNVSHELKTPLTAIKGYSEYMIDEVNDNPDLKRAVEYLNIEATRLTNLVDELLLLSCM 305

Query: 74  TGSVDSLIG-----------LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNL 122
             S ++                   +  E+   V  +++V           +  ++ +N+
Sbjct: 306 DSSKETFQLSRLNISETLIEAISKMKFREERYDVKIQLEVEDELYVCGDKEKLLQVFINI 365

Query: 123 FMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSH 179
              +     +G  V + ++   +     +   G      E    F +       S I   
Sbjct: 366 LDNSIKFSQKGSSVKVKLEREDSLVKMIVFDKGIGIPQEEISRVFERFYRAENVSGIGGT 425

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +       +      +L  E        +   L 
Sbjct: 426 GLGLSISKEIVQVLNGKLNIESHFGQGTKVYIELP 460


>gi|284920480|emb|CBG33542.1| two-component sensor kinase [Escherichia coli 042]
          Length = 895

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 62/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLI 53
           A      ++S       ALL + + HD+ +P+  +    E+L      E          I
Sbjct: 650 ASEEQARMASEREQIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASEGSPHARQASEI 708

Query: 54  RLSSMSAIIRLKFMRLAF------GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           R   ++    +  +                   +       +     ++   + +S    
Sbjct: 709 RQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPSLPSPINLSLPEP 768

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A        ++ I            +  NG      +  
Sbjct: 769 LTLIHVDGPLFERVLINLLENAVKYAGAQAEIGIDAHVEGENLQLDVWDNGPGLPPGQEQ 828

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   +      +        L 
Sbjct: 829 TIFDKFARGNKESAVPGVGLGLAICRAIVDVHGGTITAFNRPEGGACFRVTLP 881


>gi|262041233|ref|ZP_06014444.1| sensor histidine kinase KdpD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041349|gb|EEW42409.1| sensor histidine kinase KdpD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 895

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +          L   L + + HD+ +P+  +    E+L               +E+ Q 
Sbjct: 651 EEQARLTSERESLRNSLLAALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQANEIRQH 710

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKI 109
           +  ++      L   R+  G        + L ++       +      + +Q+       
Sbjct: 711 VLNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALRMLEPSLGGQHIQLDLPDPLQ 770

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +  +     ++L+NL   AH        + I  +    +    +  NG      +    
Sbjct: 771 LVHVDGPLFERVLINLLENAHKYAGARASIGIRAEADARQLSLEVWDNGPGIPAGQEQTI 830

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +   +      +        L 
Sbjct: 831 FDKFARGNKESAIPGVGLGLAICQAIVDVHGGTISASNRPEGGASFRVTLP 881


>gi|238893743|ref|YP_002918477.1| sensor protein KdpD [Klebsiella pneumoniae NTUH-K2044]
 gi|238546059|dbj|BAH62410.1| sensor for high-affinity potassium transport system [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 895

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 18/231 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---------DEVGIEDEVMQL 52
            +          L   L + + HD+ +P+  +    E+L               +E+ Q 
Sbjct: 651 EEQARLTSERESLRNSLLAALSHDLRTPLTVLFGQAEILTLDLASEGSKHAPQANEIRQH 710

Query: 53  IRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV---DKRVQVSWTGEKI 109
           +  ++      L   R+  G        + L ++       +      + +Q+       
Sbjct: 711 VLNTTRLVNNLLDMARIQSGGFNLHKEWLTLEEVVGSALRMLEPSLGGQHIQLDLPDPLQ 770

Query: 110 DLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---K 163
            +  +     ++L+NL   AH        + I  +    +    +  NG      +    
Sbjct: 771 LVHVDGPLFERVLINLLENAHKYAGARASIGIRAEADARQLSLEVWDNGPGIPAGQEQTI 830

Query: 164 FTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +   GN ES I    +       +   +   +      +        L 
Sbjct: 831 FDKFARGNKESAIPGVGLGLAICQAIVDVHGGTISASNRPEGGASFRVTLP 881


>gi|217970259|ref|YP_002355493.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
 gi|217507586|gb|ACK54597.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
          Length = 878

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 59/235 (25%), Gaps = 24/235 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRLSSMS 59
           A++     +         S + H++ +P+ AI    +LL      + +  ++ +   + S
Sbjct: 496 ARDQAEKANQAK--TEFLSSMSHELRTPLNAILGFAQLLQNGRQPLSERQLRQVEQIARS 553

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE------------ 107
               L+ +             + +     +  D I    ++ +    +            
Sbjct: 554 GRHLLQLINEVLDLARIESGRLQVSLEPMLAHDVIEDAAQIVLPLAEQQGIALALPPAQA 613

Query: 108 ----KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +IL+NL   A      GG V +  +         +   G        
Sbjct: 614 CALRFTGDYTRVKQILINLLGNAIKYNRPGGAVEVRCEAVGGRCRIGVVDTGIGIPASRL 673

Query: 164 FTQIVD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     G    +I+   +       L       L     +         L 
Sbjct: 674 GELFQPFNRLGAESGSIEGTGVGLALTRKLVDLMHGELGVHSREGEGSAFWFELP 728


>gi|222836961|gb|EEE75354.1| predicted protein [Populus trichocarpa]
          Length = 693

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 52/227 (22%), Gaps = 31/227 (13%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLK-----------FMR 68
           S I H++ +P+  I   LE               ++   +A+   K              
Sbjct: 358 SNISHELRTPLTLILGPLEDALREHGGQVPAGQTQMIHRNALRLQKLVNALLDFSRIEAG 417

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV----QVSWTGEKIDLSRERAKILLNLFM 124
                    D      ++  +    +               G          KI+LNL  
Sbjct: 418 RMQASYEPTDLARTTAELASMFRSAVEQAGLRLRVDCPPLDGPVHVDRDMYEKIVLNLLS 477

Query: 125 VAHASLPR-----------GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIV-- 168
            A     +                     +      S+   G+       P  F +    
Sbjct: 478 NAFKFTLQGEIAVALRDVPDVHDAHGAGGANGAVELSVTDTGSGIAPQHLPHLFQRFHRI 537

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            G    T +   I    V  LA  +   +     +      +  L +
Sbjct: 538 PGKPARTHEGTGIGLAMVQELARLHGGTVTVSSTEGEGSRFTVRLPR 584


>gi|190575607|ref|YP_001973452.1| putative transmembrane two component sensor histidine kinase
           [Stenotrophomonas maltophilia K279a]
 gi|190013529|emb|CAQ47164.1| putative transmembrane two component sensor histidine kinase
           [Stenotrophomonas maltophilia K279a]
          Length = 537

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 67/224 (29%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI+ +++LL+E       +  ++Q+IR       
Sbjct: 307 RAESLTLSAMGRFSASLAHEIRNPLAAINYAVQLLEEGTGFNESDRRLLQIIRQQCQRTN 366

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK--------RVQVSWTGEKIDLSR 113
             ++ +        +    + L    +         +         +    +      ++
Sbjct: 367 GIVESVLGLARRERATPENVDLVAFVRRFVLEYKQGQTLETDSIEPIISDTSVMAQVDAK 426

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISV---QDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              ++L  L   A      G +           +   +  +   G          Q+   
Sbjct: 427 HLYQVLTVLVHNALKYGRIGQQPARVRLRVAQHERSAVIDVMDRGPGIPES-VAAQLFRP 485

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ RL    +         +L 
Sbjct: 486 FFTTSEHGTGLGLYIARELCRANQARLDYIAVPAGGSCFRLVLP 529


>gi|150376319|ref|YP_001312915.1| histidine kinase [Sinorhizobium medicae WSM419]
 gi|150030866|gb|ABR62982.1| histidine kinase [Sinorhizobium medicae WSM419]
          Length = 620

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 59/233 (25%), Gaps = 20/233 (8%)

Query: 1   MAKNICFNLSSMDLV--ALLCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48
           +       + +  L     + + + H+I  P+  I    +     L+           + 
Sbjct: 389 LQAVQQDLVQANRLAILGQVAAGVAHEINQPVATIRAYADNARTFLERGQSATAAENMES 448

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTG- 106
           + +L            +F R      G       +     +    F      +++     
Sbjct: 449 IAELTERVGAITDELRRFARKGHFAAGPTAMKDVIEGALMLLRSRFAGRMDAIRIDLPPD 508

Query: 107 --EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPE 162
             +         ++L+NL   A  ++   G   I V   +       ++  NG      +
Sbjct: 509 GLQVFGNRIRLEQVLINLLQNALEAIGDSGNGAIKVSCEETATAVTLTVADNGPGI-PAD 567

Query: 163 KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
              ++      S  D   +       +  +    +               L K
Sbjct: 568 VREELFTPFNTSKEDGLGLGLAISKEIVSDYGGTIEVASSP-SGTTFIVNLMK 619


>gi|124009958|ref|ZP_01694623.1| MmoS [Microscilla marina ATCC 23134]
 gi|123984042|gb|EAY24420.1| MmoS [Microscilla marina ATCC 23134]
          Length = 670

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/225 (10%), Positives = 63/225 (28%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR----LK 65
            +  L +   + + H+I +P+  I   ++L++     + ++    L   S          
Sbjct: 436 EANRLKSNFLANMSHEIRTPLNGILGVVQLIEIESDNETMLHYAHLIGQSGQRLLNTING 495

Query: 66  FMRLAFGYTGSVDSLIGLGDIEQV--------IEDFIAVDKRVQVSWTGEKIDLSRERA- 116
            + L+       +      +I ++             + +  + + +   +  +  +   
Sbjct: 496 ILDLSRIEANRAEVSWEQVNIIELVSALVQSLEVLANSRNIYLNIEFNLAQKQVLIDPYL 555

Query: 117 --KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVD----- 169
             ++L NL   A     RGG VT+ + D  N     +   G                   
Sbjct: 556 LEQVLNNLLGNAIKFTERGG-VTLRLNDENNCLTIEVIDTGIGIEEHFLKEIFEPFKQES 614

Query: 170 GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +E       +       +       +      +     + +  
Sbjct: 615 TGMERRFQGSGLGLAIAKKIVELMGGDIKVHSKKNLGSCFTVIFP 659


>gi|83646635|ref|YP_435070.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
 gi|83634678|gb|ABC30645.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
          Length = 659

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/238 (9%), Positives = 62/238 (26%), Gaps = 28/238 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+N   + S     +   + + H++ +P+  +   L+LL E   ++E  +   ++  S  
Sbjct: 257 ARNEAESASKAK--SEFLAIMSHELRTPMNGVLGMLQLLQETQQDEEQKEYTHVAMRSTE 314

Query: 62  IRLKFMRLAFGYTG-----------------SVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
             +  +     ++                   V+  +     +   +  +   +      
Sbjct: 315 HLIAIIDDILDFSKIERGRLSIDPIEFNLRALVEETLNAFRPQVEEKGLLLHQEYEGELQ 374

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQD----SKNENIFSLKINGNLARF 160
                       ++L NL   A      G     +  +     K      ++ +G     
Sbjct: 375 DALVTADPARIRQVLANLINNAIKFTAEGYIRVHANWEEIGADKVCFTCEVEDSGIGIAP 434

Query: 161 PEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
            ++          D +         +       L    +  +  E            L
Sbjct: 435 EQQRRMFSSFQQADQSNSRRYGGTGLGLAIAKRLLELMEGEIFVESESGKGSCFKFAL 492


>gi|62389303|ref|YP_224705.1| two component sensor kinase [Corynebacterium glutamicum ATCC 13032]
 gi|145294520|ref|YP_001137341.1| hypothetical protein cgR_0475 [Corynebacterium glutamicum R]
 gi|21323168|dbj|BAB97796.1| Two-component system, sensory transduction histidine kinases
           [Corynebacterium glutamicum ATCC 13032]
 gi|41324637|emb|CAF19119.1| probable two component sensor kinase [Corynebacterium glutamicum
           ATCC 13032]
 gi|140844440|dbj|BAF53439.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 413

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/232 (8%), Positives = 59/232 (25%), Gaps = 22/232 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAII 62
           ++    + S        + + H++ +P+G +    E L E   + E ++           
Sbjct: 147 ESENVRMESAR--RDFVANVSHELKTPVGGMALLAEALMESSDDPEQVEYFGSRLHREAH 204

Query: 63  RLKFMRL------------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
           R+  M                     V +   + +  +  +          +      + 
Sbjct: 205 RMADMINELISLSKLQGAERLPDMEPVQADDIISEAIERTQLAADNANIEIIRGDRTGVW 264

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R+ ++  L      A    P+   V++S     +  +  +   G      ++    
Sbjct: 265 VEADRSLLVTALANLISNAINYSPKSVPVSVSQSIRNDVVMIRVTDRGIGIAPEDQGRVF 324

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +    V  +   +   +            +  L 
Sbjct: 325 ERFFRVDKARSRQTGGTGLGLAIVKHVMANHGGSISLWSRPGTGSTFTLELP 376


>gi|110643637|ref|YP_671367.1| osmolarity sensor protein [Escherichia coli 536]
 gi|191171499|ref|ZP_03033047.1| osmolarity sensor protein EnvZ [Escherichia coli F11]
 gi|218691681|ref|YP_002399893.1| osmolarity sensor protein [Escherichia coli ED1a]
 gi|300987221|ref|ZP_07178058.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|301019579|ref|ZP_07183739.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|331685044|ref|ZP_08385630.1| osmolarity sensor protein EnvZ [Escherichia coli H299]
 gi|110345229|gb|ABG71466.1| osmolarity sensor protein EnvZ [Escherichia coli 536]
 gi|190908126|gb|EDV67717.1| osmolarity sensor protein EnvZ [Escherichia coli F11]
 gi|218429245|emb|CAR10055.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli ED1a]
 gi|222035106|emb|CAP77851.1| Osmolarity sensor protein envZ [Escherichia coli LF82]
 gi|300306256|gb|EFJ60776.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 200-1]
 gi|300399167|gb|EFJ82705.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 69-1]
 gi|312947952|gb|ADR28779.1| osmolarity sensor protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|324009405|gb|EGB78624.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 57-2]
 gi|324014607|gb|EGB83826.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 60-1]
 gi|331077415|gb|EGI48627.1| osmolarity sensor protein EnvZ [Escherichia coli H299]
          Length = 450

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|16131281|ref|NP_417863.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli str. K-12 substr. MG1655]
 gi|24114667|ref|NP_709177.1| osmolarity sensor protein [Shigella flexneri 2a str. 301]
 gi|30065313|ref|NP_839484.1| osmolarity sensor protein [Shigella flexneri 2a str. 2457T]
 gi|74313907|ref|YP_312326.1| osmolarity sensor protein [Shigella sonnei Ss046]
 gi|82545759|ref|YP_409706.1| osmolarity sensor protein [Shigella boydii Sb227]
 gi|82778779|ref|YP_405128.1| osmolarity sensor protein [Shigella dysenteriae Sd197]
 gi|89110606|ref|AP_004386.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli str. K-12 substr. W3110]
 gi|110807236|ref|YP_690756.1| osmolarity sensor protein [Shigella flexneri 5 str. 8401]
 gi|157155829|ref|YP_001464861.1| osmolarity sensor protein [Escherichia coli E24377A]
 gi|157162881|ref|YP_001460199.1| osmolarity sensor protein [Escherichia coli HS]
 gi|170018360|ref|YP_001723314.1| osmolarity sensor protein [Escherichia coli ATCC 8739]
 gi|170082921|ref|YP_001732241.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli str. K-12 substr. DH10B]
 gi|188494194|ref|ZP_03001464.1| osmolarity sensor protein EnvZ [Escherichia coli 53638]
 gi|191167875|ref|ZP_03029679.1| osmolarity sensor protein EnvZ [Escherichia coli B7A]
 gi|193061701|ref|ZP_03042798.1| osmolarity sensor protein EnvZ [Escherichia coli E22]
 gi|193068741|ref|ZP_03049701.1| osmolarity sensor protein EnvZ [Escherichia coli E110019]
 gi|194427014|ref|ZP_03059566.1| osmolarity sensor protein EnvZ [Escherichia coli B171]
 gi|194435954|ref|ZP_03068057.1| osmolarity sensor protein EnvZ [Escherichia coli 101-1]
 gi|209920860|ref|YP_002294944.1| osmolarity sensor protein [Escherichia coli SE11]
 gi|238902495|ref|YP_002928291.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli BW2952]
 gi|253771767|ref|YP_003034598.1| osmolarity sensor protein [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254038571|ref|ZP_04872627.1| osmolarity sensor protein EnvZ [Escherichia sp. 1_1_43]
 gi|256020748|ref|ZP_05434613.1| osmolarity sensor protein [Shigella sp. D9]
 gi|256025868|ref|ZP_05439733.1| osmolarity sensor protein [Escherichia sp. 4_1_40B]
 gi|260846188|ref|YP_003223966.1| sensory histidine kinase EnvZ in two-component regulatory system
           with OmpR [Escherichia coli O103:H2 str. 12009]
 gi|260870130|ref|YP_003236532.1| sensory histidine kinase EnvZ in two-component regulatory system
           with OmpR [Escherichia coli O111:H- str. 11128]
 gi|291284740|ref|YP_003501558.1| Osmolarity sensor protein envZ [Escherichia coli O55:H7 str.
           CB9615]
 gi|293416806|ref|ZP_06659443.1| osmolarity sensor protein envZ [Escherichia coli B185]
 gi|293453710|ref|ZP_06664129.1| osmolarity sensor protein envZ [Escherichia coli B088]
 gi|300815400|ref|ZP_07095625.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300822799|ref|ZP_07102935.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300907454|ref|ZP_07125099.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300919311|ref|ZP_07135824.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300926907|ref|ZP_07142672.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300931065|ref|ZP_07146419.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|300946854|ref|ZP_07161094.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300956732|ref|ZP_07169003.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|301023126|ref|ZP_07186932.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|301302282|ref|ZP_07208414.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|301329709|ref|ZP_07222458.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|307140089|ref|ZP_07499445.1| osmolarity sensor protein [Escherichia coli H736]
 gi|307311932|ref|ZP_07591570.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli W]
 gi|309785851|ref|ZP_07680482.1| osmolarity sensor protein envZ [Shigella dysenteriae 1617]
 gi|309794674|ref|ZP_07689096.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|312972332|ref|ZP_07786506.1| osmolarity sensor protein envZ [Escherichia coli 1827-70]
 gi|331644104|ref|ZP_08345233.1| osmolarity sensor protein EnvZ [Escherichia coli H736]
 gi|331654981|ref|ZP_08355980.1| osmolarity sensor protein EnvZ [Escherichia coli M718]
 gi|331670226|ref|ZP_08371065.1| osmolarity sensor protein EnvZ [Escherichia coli TA271]
 gi|331679468|ref|ZP_08380138.1| osmolarity sensor protein EnvZ [Escherichia coli H591]
 gi|332281951|ref|ZP_08394364.1| protein histidine kinase/phosphatase sensor for OmpR [Shigella sp.
           D9]
 gi|84027869|sp|P0AEJ4|ENVZ_ECOLI RecName: Full=Osmolarity sensor protein envZ
 gi|84027870|sp|P0AEJ5|ENVZ_SHIFL RecName: Full=Osmolarity sensor protein envZ
 gi|147006|gb|AAA16242.1| EnvZ protein [Escherichia coli]
 gi|606338|gb|AAA58201.1| CG Site No. 807; alternate names ompB, perA, tpo [Escherichia coli
           str. K-12 substr. MG1655]
 gi|1789808|gb|AAC76429.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli str. K-12 substr. MG1655]
 gi|13276843|emb|CAC34269.1| EnvZ protein [Shigella flexneri]
 gi|24053874|gb|AAN44884.1| protein histidine kinase/phosphatase sensor for OmpR, modulates
           expression of ompF and ompC [Shigella flexneri 2a str.
           301]
 gi|30043575|gb|AAP19295.1| protein histidine kinase/phosphatase sensor for OmpR, modulates
           expression of ompF and ompC [Shigella flexneri 2a str.
           2457T]
 gi|73857384|gb|AAZ90091.1| protein histidine kinase/phosphatase sensor for OmpR, modulates
           expression of ompF and ompC [Shigella sonnei Ss046]
 gi|81242927|gb|ABB63637.1| protein histidine kinase/phosphatase sensor for OmpR [Shigella
           dysenteriae Sd197]
 gi|81247170|gb|ABB67878.1| EnzV [Shigella boydii Sb227]
 gi|85676637|dbj|BAE77887.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli str. K12 substr. W3110]
 gi|110616784|gb|ABF05451.1| osmolarity sensor protein [Shigella flexneri 5 str. 8401]
 gi|157068561|gb|ABV07816.1| osmolarity sensor protein EnvZ [Escherichia coli HS]
 gi|157077859|gb|ABV17567.1| osmolarity sensor protein EnvZ [Escherichia coli E24377A]
 gi|169753288|gb|ACA75987.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli ATCC 8739]
 gi|169890756|gb|ACB04463.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli str. K-12 substr. DH10B]
 gi|188489393|gb|EDU64496.1| osmolarity sensor protein EnvZ [Escherichia coli 53638]
 gi|190902048|gb|EDV61793.1| osmolarity sensor protein EnvZ [Escherichia coli B7A]
 gi|192932491|gb|EDV85088.1| osmolarity sensor protein EnvZ [Escherichia coli E22]
 gi|192957817|gb|EDV88260.1| osmolarity sensor protein EnvZ [Escherichia coli E110019]
 gi|194414975|gb|EDX31245.1| osmolarity sensor protein EnvZ [Escherichia coli B171]
 gi|194425497|gb|EDX41481.1| osmolarity sensor protein EnvZ [Escherichia coli 101-1]
 gi|209914119|dbj|BAG79193.1| two-component sensor kinase [Escherichia coli SE11]
 gi|226839077|gb|EEH71100.1| osmolarity sensor protein EnvZ [Escherichia sp. 1_1_43]
 gi|238863532|gb|ACR65530.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli BW2952]
 gi|253322811|gb|ACT27413.1| histidine kinase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|257761335|dbj|BAI32832.1| sensory histidine kinase EnvZ in two-component regulatory system
           with OmpR [Escherichia coli O103:H2 str. 12009]
 gi|257766486|dbj|BAI37981.1| sensory histidine kinase EnvZ in two-component regulatory system
           with OmpR [Escherichia coli O111:H- str. 11128]
 gi|260447577|gb|ACX37999.1| histidine kinase [Escherichia coli DH1]
 gi|281602754|gb|ADA75738.1| Osmolarity sensor protein envZ [Shigella flexneri 2002017]
 gi|290764613|gb|ADD58574.1| Osmolarity sensor protein envZ [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321836|gb|EFE61267.1| osmolarity sensor protein envZ [Escherichia coli B088]
 gi|291431382|gb|EFF04367.1| osmolarity sensor protein envZ [Escherichia coli B185]
 gi|299880980|gb|EFI89191.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 196-1]
 gi|300316488|gb|EFJ66272.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 175-1]
 gi|300400792|gb|EFJ84330.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 84-1]
 gi|300413606|gb|EFJ96916.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 115-1]
 gi|300417090|gb|EFK00401.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 182-1]
 gi|300453463|gb|EFK17083.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 116-1]
 gi|300461085|gb|EFK24578.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 187-1]
 gi|300524565|gb|EFK45634.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 119-7]
 gi|300532292|gb|EFK53354.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 107-1]
 gi|300842445|gb|EFK70205.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 124-1]
 gi|300844221|gb|EFK71981.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 78-1]
 gi|306908076|gb|EFN38576.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli W]
 gi|308121724|gb|EFO58986.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 145-7]
 gi|308926971|gb|EFP72447.1| osmolarity sensor protein envZ [Shigella dysenteriae 1617]
 gi|309703815|emb|CBJ03156.1| two-component sensor kinase [Escherichia coli ETEC H10407]
 gi|310334709|gb|EFQ00914.1| osmolarity sensor protein envZ [Escherichia coli 1827-70]
 gi|315062683|gb|ADT77010.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli W]
 gi|315255994|gb|EFU35962.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 85-1]
 gi|315614672|gb|EFU95312.1| osmolarity sensor protein envZ [Escherichia coli 3431]
 gi|320181894|gb|EFW56800.1| Osmolarity sensory histidine kinase EnvZ [Shigella boydii ATCC
           9905]
 gi|320186726|gb|EFW61449.1| Osmolarity sensory histidine kinase EnvZ [Shigella flexneri CDC
           796-83]
 gi|320199574|gb|EFW74164.1| Osmolarity sensory histidine kinase EnvZ [Escherichia coli EC4100B]
 gi|320639686|gb|EFX09280.1| osmolarity sensor protein [Escherichia coli O157:H7 str. G5101]
 gi|320655687|gb|EFX23610.1| osmolarity sensor protein [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661471|gb|EFX28886.1| osmolarity sensor protein [Escherichia coli O55:H7 str. USDA 5905]
 gi|323162789|gb|EFZ48626.1| osmolarity sensor protein envZ [Escherichia coli E128010]
 gi|323174037|gb|EFZ59665.1| osmolarity sensor protein envZ [Escherichia coli LT-68]
 gi|323182864|gb|EFZ68265.1| osmolarity sensor protein envZ [Escherichia coli 1357]
 gi|323376729|gb|ADX48997.1| integral membrane sensor signal transduction histidine kinase
           [Escherichia coli KO11]
 gi|323934606|gb|EGB31006.1| hsp90-like protein [Escherichia coli E1520]
 gi|323939376|gb|EGB35587.1| hsp90-like protein [Escherichia coli E482]
 gi|323944374|gb|EGB40449.1| hsp90-like protein [Escherichia coli H120]
 gi|323959596|gb|EGB55248.1| hsp90-like protein [Escherichia coli H489]
 gi|323970002|gb|EGB65277.1| hsp90-like protein [Escherichia coli TA007]
 gi|324018721|gb|EGB87940.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Escherichia coli MS 117-3]
 gi|324116401|gb|EGC10320.1| hsp90-like protein [Escherichia coli E1167]
 gi|331036398|gb|EGI08624.1| osmolarity sensor protein EnvZ [Escherichia coli H736]
 gi|331046996|gb|EGI19074.1| osmolarity sensor protein EnvZ [Escherichia coli M718]
 gi|331062288|gb|EGI34208.1| osmolarity sensor protein EnvZ [Escherichia coli TA271]
 gi|331072640|gb|EGI43965.1| osmolarity sensor protein EnvZ [Escherichia coli H591]
 gi|332104303|gb|EGJ07649.1| protein histidine kinase/phosphatase sensor for OmpR [Shigella sp.
           D9]
 gi|332751300|gb|EGJ81703.1| osmolarity sensor protein envZ [Shigella flexneri 2747-71]
 gi|332996649|gb|EGK16274.1| osmolarity sensor protein envZ [Shigella flexneri K-272]
 gi|332997106|gb|EGK16722.1| osmolarity sensor protein envZ [Shigella flexneri K-218]
 gi|333012446|gb|EGK31827.1| osmolarity sensor protein envZ [Shigella flexneri K-304]
 gi|333013056|gb|EGK32432.1| osmolarity sensor protein envZ [Shigella flexneri K-227]
          Length = 450

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|317128901|ref|YP_004095183.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
 gi|315473849|gb|ADU30452.1| multi-sensor hybrid histidine kinase [Bacillus cellulosilyticus DSM
           2522]
          Length = 907

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 61/239 (25%), Gaps = 27/239 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSM 58
            KN    LSS    +   + + H++ +P+ +I    ++L E     +  + ++       
Sbjct: 490 EKNKSIQLSS-RYKSEFLANMSHELRTPLNSILILSQMLSENANGNLSKKQIEHAETIYS 548

Query: 59  SAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
           S                       +     +   + + +         +  +  +  +  
Sbjct: 549 SGKDLLDLINDILDLSKIESGKVEVYPEELFIEDMRAFVERQFHPIAEQKGLQFNCYIHQ 608

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPR--GGKVTISVQDSKNENIFSLKINGNLARF 160
                     +   +IL NL   A     +               + +FS+   G     
Sbjct: 609 ETPSILYTDDQRLKQILKNLLSNAFKFTAQGTVRFEVHPSYSESTKVVFSIIDTGIGIPP 668

Query: 161 PE---KFTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    F     G+           +       LA+    R+     D      S  L 
Sbjct: 669 EKQESVFEAFHQGDGTTTREYGGTGLGLSISRELANLLGGRIEVVSEDGKGSTFSLYLP 727


>gi|237718881|ref|ZP_04549362.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
 gi|229451659|gb|EEO57450.1| two-component system sensor histidine kinase/response regulator
            [Bacteroides sp. 2_2_4]
          Length = 1331

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 21/233 (9%)

Query: 2    AKNICFNLSSMDLVAL-LCSRICHDIISPIGAIHNSLELLDE------------VGIEDE 48
             K    ++  ++   L   + I H+  +P+  I   +E+L +            +G+   
Sbjct: 798  EKRHIEDIEKLNQAKLCFFTNISHEFRTPLTLIIGQMEMLLQVRSFNPNVYNKILGVYKS 857

Query: 49   VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV----SW 104
             +QL  L +     R +            + +  + +   + +++ A  +        S 
Sbjct: 858  CLQLRELVTELLDFRKQEQGHMTIKVCEHNMVHFIYEHYLLFQEYAAQRQITFNFEKSSN 917

Query: 105  TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF 164
                   +++  K + NL   A      GG ++I+V+    E +  +  NG+     +  
Sbjct: 918  NISVWFDAKQMQKAINNLISNAFKYTKAGGTISIAVRKRNQEVLIEITDNGSGIAEKDID 977

Query: 165  TQIVDGNVES----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                          +     I       +   +   +               L
Sbjct: 978  KIFNRFYQADTESPSHTGTGIGLALTKGIIELHHGSIDVSSELGEGTTFRIHL 1030


>gi|254281985|ref|ZP_04956953.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium
           NOR51-B]
 gi|219678188|gb|EED34537.1| phosphate regulon sensor kinase PhoR [gamma proteobacterium
           NOR51-B]
          Length = 436

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 17/233 (7%), Positives = 63/233 (27%), Gaps = 19/233 (8%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRL 55
           + +++   +   ++     + + H++ +P+  I   +++  +            +  +  
Sbjct: 191 LVRDVTDRIRLEEMRQDFVANVSHELRTPLTVIKGHIQMAIDNPTMGPDHLQRSLAQVDA 250

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ---------VIEDFIAVDKRVQVSWTG 106
            +      L  +                              +   F   +  +++    
Sbjct: 251 QTARMENLLTDLLWLSRIESMEHERKTEWVAVDKLLETLVAELRPGFQDREIELEIRTGY 310

Query: 107 EKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF-- 164
             +   ++    + NL + A    P    V I     +   +  ++ NG           
Sbjct: 311 AVMGDVKQLHSAVSNLIINALKYSPAESPVIIRGFIEEQGYVIEVQDNGPGIEAGHLPRL 370

Query: 165 -TQIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    +   +       +    V  +A+ +   L  +       V + + +
Sbjct: 371 TERFYRVDKSRSQATGGTGLGLAIVKHVANAHNAELRIQSEVGVGSVFALVFQ 423


>gi|254410180|ref|ZP_05023960.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
 gi|196183216|gb|EDX78200.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Microcoleus chthonoplastes PCC 7420]
          Length = 423

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 60/233 (25%), Gaps = 26/233 (11%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---------RL 55
           I  +   +       +   H++ SP+ AI  S++++                        
Sbjct: 192 IEQSFQQLK---QFTADASHELRSPLMAIKASVDVMRNHPERIHPKDAKKLAAIASATDQ 248

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---- 111
            S  +   L   R     +      I +   + +      ++   Q      +       
Sbjct: 249 MSHLSEDLLFLARNDSKISTPSREKITISLNKILKNLLELLEPFAQDKEVKIQSQWLATV 308

Query: 112 -----SRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEK 163
                  + +++  NL   A    P  GKV + +  +    I S+K  G        P  
Sbjct: 309 SVVGDESQLSRLFCNLLENAIQYTPAKGKVDLILAKNNRFAIVSVKDTGIGIEREQLPFV 368

Query: 164 FTQIVDGN--VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           F +    +           +       +A  +  ++               L 
Sbjct: 369 FDRFWRADKARSRREGGTGLGLAIAQAIAQRHGGKITVTSQVGVGSCFQVRLP 421


>gi|168264317|ref|ZP_02686290.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
 gi|205347184|gb|EDZ33815.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Hadar str. RI_05P066]
          Length = 894

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|164687648|ref|ZP_02211676.1| hypothetical protein CLOBAR_01290 [Clostridium bartlettii DSM 16795]
 gi|164603422|gb|EDQ96887.1| hypothetical protein CLOBAR_01290 [Clostridium bartlettii DSM 16795]
          Length = 1063

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 74/242 (30%), Gaps = 29/242 (11%)

Query: 1    MAKNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLD--------EVGIEDE 48
            M KN   +  ++ L     +     + H++ +P+  + ++ +LL         +    + 
Sbjct: 818  MKKNTILHNKNIKLERNKNSYFV-NLSHELRTPLNVMSSTNQLLKGLSGNSIIDGEKLNY 876

Query: 49   VMQLIRLSSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDI-EQVIEDFIAVDKR 99
             + + + +    +  +  +         +        D +  + +    + +   +    
Sbjct: 877  YVDISQRNCKRLLNLINNILDSSKLQNDMYQITLKETDVVYLVEETALTLKDYIYSKGID 936

Query: 100  VQVSWTGEKIDLSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
            + +    E+  +  +  +I   +      A    P GG +TI+++D  ++   S+   G 
Sbjct: 937  LIIDPQIEEKMIKCDPYEIERCIINLVGNAVKFTPEGGSITINIEDLDDKVKISVTDTGC 996

Query: 157  LARFPEKFTQIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
                          +     +       +       +   +K ++  E           +
Sbjct: 997  GIDEKFHKAIFDRFSQVEDSEPVKSGSGLGLTITNQIIKLHKGKIYVESELGKGSTFVII 1056

Query: 213  LE 214
            L 
Sbjct: 1057 LP 1058


>gi|160882534|ref|ZP_02063537.1| hypothetical protein BACOVA_00485 [Bacteroides ovatus ATCC 8483]
 gi|156112115|gb|EDO13860.1| hypothetical protein BACOVA_00485 [Bacteroides ovatus ATCC 8483]
          Length = 790

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 63/235 (26%), Gaps = 25/235 (10%)

Query: 4   NICFNLSSMDLVALLCSR------ICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
                 S+ +   LL SR      I HD+ SP+  I  + ELL +        +      
Sbjct: 300 RRQLEASNRENTELLQSRKCMMLTIAHDLRSPLATIRATAELLPDEKERAGQAEYAENIR 359

Query: 58  MSAIIR--------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
            ++             ++        ++          ++  +++ + ++  +       
Sbjct: 360 HASDYMLSLVDTLMNFYLLDTGQARENISVFCLETLFREIANNYMPLVQKKGLQLFPRYS 419

Query: 110 -------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
                         +I+ NL   A     + G V +    S  E    ++  G      E
Sbjct: 420 GLNVVVSCDKGHLQQIVNNLLSNALKFTGK-GYVRLEATFSSGELCIKVQDTGAGMNDEE 478

Query: 163 ---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F      +    I    +    V  L  +    +  E         +  L 
Sbjct: 479 QKRIFDAFERLDNARGISGFGLGLAIVSRLVSQLGGSIGVESHPGKGSCFTVSLP 533


>gi|124005780|ref|ZP_01690619.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
 gi|123988848|gb|EAY28454.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
           23134]
          Length = 662

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 59/244 (24%), Gaps = 32/244 (13%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +       +      +   + I H++ +P+  I    +LL EV         ++    S 
Sbjct: 150 LKNEELKRIEQFK--SNFFAEISHELRTPLNGIIGLTDLLLEVMTNPHHADYLKAIQSSG 207

Query: 61  IIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW 104
                                           +   I L   ++ ++  I V+  +    
Sbjct: 208 NHLVTIVNDVLDMSKIESGQMQFEETHINLPEMLQNIVLSFKQKFMQKGIQVNTVLATDV 267

Query: 105 TGEKIDLSRERAKILLNLFMVAHASL---------PRGGKVTISVQDSKNENIFSLKING 155
             E +       +IL NL   A                  V  + Q  + +  F +K +G
Sbjct: 268 PEEVLGDKVRLTQILYNLVGNAIKFTSEGEVSIEITFVAPVPSADQAEQIQLDFIVKDSG 327

Query: 156 NLARFPEKFTQIVDGNVEST-----IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              +              S           +    V  L       +          + +
Sbjct: 328 IGIKKERLQQIFEPYQQASKQTTRLYGGTGLGLSIVRQLIELQGGHISVNSRWGEGTIFN 387

Query: 211 ALLE 214
            +L 
Sbjct: 388 FVLP 391


>gi|91976178|ref|YP_568837.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisB5]
 gi|91682634|gb|ABE38936.1| cell cycle control histidine kinase CckA [Rhodopseudomonas
           palustris BisB5]
          Length = 850

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/241 (10%), Positives = 68/241 (28%), Gaps = 29/241 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSM 58
           +N       MD +  L   I HD  + + AI  + + L           + +  I+ ++ 
Sbjct: 455 ENQVNQAQKMDTIGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQNAT 514

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE---- 114
            A   ++ +            ++ L +    I+  +      +V+ T             
Sbjct: 515 RAATLVRQLLAFSRKQTLRPQVLDLREALTDIDRLLKRLIGEKVTLTMPHGRDLWRVKAD 574

Query: 115 ---RAKILLNLFMVAHASLPRG---------------GKVTISVQDSKNENIFSLKINGN 156
                ++++NL + A  ++P G                ++      + +     +   G 
Sbjct: 575 VSQFEQVIVNLAVNARDAMPDGGKLTIRTCNVTAADAAQLAHKGMPAADYVRIDVSDTGT 634

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                +   +I +    +        +    V  +  +    +  +            L 
Sbjct: 635 GI-PADIVDKIFEPFFSTKEVGKGTGLGLSTVYGIIKQTGGFVYVDSEPGKGTTFQIFLP 693

Query: 215 K 215
           +
Sbjct: 694 R 694


>gi|85716548|ref|ZP_01047518.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
 gi|85696549|gb|EAQ34437.1| Signal transduction histidine kinase [Nitrobacter sp. Nb-311A]
          Length = 850

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 69/244 (28%), Gaps = 31/244 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLS 56
           +   I  +   M+ V  L   I HD  + + AI  + + L           + +  I+ +
Sbjct: 453 LESQINQS-QKMESVGQLAGGIAHDFNNVLSAIMMANDFLLNAHKPTDPSFQDIMQIKQN 511

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT--------GEK 108
           +  A   ++ +            ++ LGD    I   +      +V++            
Sbjct: 512 ANRAAALVRQLLAFSRRQTLQPKVLDLGDTLSDIGMLLKRLIGEKVTFPGVVHGRDLWPV 571

Query: 109 IDLSRERAKILLNLFMVAHASLPR---------------GGKVTISVQDSKNENIFSLKI 153
                +  ++++NL + A  ++P                          + +  +  +  
Sbjct: 572 KADVSQFEQVIVNLVVNARDAMPNGGKLAIRTANVAAAEIPTFGHKGLPAADYVLVEVSD 631

Query: 154 NGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
            G     PE   +I +    +        +    V  +  +    +  +           
Sbjct: 632 TGTGI-PPEIVDKIFEPFFSTKEVGKGTGLGLSTVYGIVKQTGGFIYVDSKAGEGTTFRI 690

Query: 212 LLEK 215
            L +
Sbjct: 691 FLPR 694


>gi|120553437|ref|YP_957788.1| histidine kinase [Marinobacter aquaeolei VT8]
 gi|120323286|gb|ABM17601.1| amino acid-binding domain sensor histidine kinase [Marinobacter
           aquaeolei VT8]
          Length = 922

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/255 (9%), Positives = 64/255 (25%), Gaps = 45/255 (17%)

Query: 5   ICFNLSSMDLV----------ALLCSRICHDIISPIGAIHNSLELL----DEVGIEDEVM 50
               L +  L           +   + + H+I +P+ A+    +LL     +    + + 
Sbjct: 560 RAAKLEAERLAREAEAASRAKSEFLANMSHEIRTPMNAVIGYSDLLYNSVTDPQQRNYLN 619

Query: 51  QLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS------- 103
            +   S    ++    + L+    G +    G   + +++ D   +              
Sbjct: 620 AIRAGSRSLLMLINDILDLSRIEAGKMRLDFGPVSVRRLLSDVRHIFDLRATEQGITLEV 679

Query: 104 -----WTGEKIDLSRERAKILLNLFMVAHASLPRG------------GKVTISVQDSKNE 146
                     +       ++L NL   A      G                   +     
Sbjct: 680 SVGSGMPSAMMLDETRLRQVLFNLVGNAIKFTHEGGVTVRAVAKPLGEPADADSEVCYYR 739

Query: 147 NIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPE 200
            + ++   G     P++  +I +                 +       L      RL  +
Sbjct: 740 LVVTVADTGIGI-APDQQERIFEAFEQQEGQSSRRYGGTGLGLAISRKLVEMMGGRLTVK 798

Query: 201 IIDDHNVVLSALLEK 215
              +       +L +
Sbjct: 799 SEANVGSTFKVVLPR 813


>gi|119387834|ref|YP_918868.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
 gi|119378409|gb|ABL73172.1| integral membrane sensor signal transduction histidine kinase
           [Paracoccus denitrificans PD1222]
          Length = 901

 Score =  107 bits (268), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 66/239 (27%), Gaps = 28/239 (11%)

Query: 4   NICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGI-----EDEVMQL 52
            +    ++  L +L        S + H++ +P+ +I    EL+ +         +E + +
Sbjct: 653 TVELRAANEKLKSLDQLKDDFMSSVTHELRTPLTSIRALTELMLDTPDIQPQEREEFLNI 712

Query: 53  IRLSSMSAIIRLKF--------MRLAFGYTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVS 103
           I   S      +            +A  +   VD    +    +   +        V   
Sbjct: 713 ILSESERLSRLVNQVLDLAKIESGMAEWHNTDVDMKALIVAALRSTAELFRERGAEVLAD 772

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLAR 159
              +   +  +  ++   L  +   +     +    V    +   +E + +++ NG    
Sbjct: 773 LPEQVPMVLADPDRLTQVLVNLLSNAAKFVPEGRGRVEVALRHRGDELVVTVRDNGPGVA 832

Query: 160 FPE---KFTQIVDGNVES-TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F +   G           +       +      R+  +         +  L 
Sbjct: 833 PEDQAAVFDKFRQGGEAGNRPPGTGLGLPISRQIVVNLGGRMWLDSQPGQGACFAFSLP 891


>gi|320645184|gb|EFX14200.1| osmolarity sensor protein [Escherichia coli O157:H- str. 493-89]
 gi|320650495|gb|EFX18961.1| osmolarity sensor protein [Escherichia coli O157:H- str. H 2687]
          Length = 448

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|320015940|gb|ADV99511.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Medievalis str. Harbin
           35]
          Length = 949

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 454 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 513

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 514 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 573

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 574 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 632

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 633 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 691


>gi|228999317|ref|ZP_04158897.1| hypothetical protein bmyco0003_38730 [Bacillus mycoides Rock3-17]
 gi|229006872|ref|ZP_04164504.1| hypothetical protein bmyco0002_37740 [Bacillus mycoides Rock1-4]
 gi|228754365|gb|EEM03778.1| hypothetical protein bmyco0002_37740 [Bacillus mycoides Rock1-4]
 gi|228760514|gb|EEM09480.1| hypothetical protein bmyco0003_38730 [Bacillus mycoides Rock3-17]
          Length = 311

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 59/220 (26%), Gaps = 22/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-------------EVGIEDEVMQLIRLSSMSAIIRL 64
           + S I HD+ +P+  I    E+L+                +  + ++++ L      +  
Sbjct: 89  MLSNISHDLKTPLTVILGYTEMLNADKTISKEERQVLLEKVHLKTLEVMELIHKFFDLAK 148

Query: 65  KFMRLAFGYTGSVDSLIGLGD-IEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120
                       V+      + I    +        V +    + +          ++L 
Sbjct: 149 LESGDKAVEMTKVNMNEVCREKILTFYDLVTTKGFEVHIDIPEKNVYALGNTEVLGRVLN 208

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-- 175
           NL   A A    G  + I+++D        +   G           F ++          
Sbjct: 209 NLISNAIAYGYDGKTLGITLRDDDRCVYVDVWDRGKGIDESHIDKVFERMYTLEDSRNRL 268

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +       L       +          V + +L+K
Sbjct: 269 YQGSGLGLTITKRLVEALGGEIHLSSTPYKKTVFTIVLKK 308


>gi|254480471|ref|ZP_05093718.1| phosphate regulon sensor kinase PhoR [marine gamma proteobacterium
           HTCC2148]
 gi|214039054|gb|EEB79714.1| phosphate regulon sensor kinase PhoR [marine gamma proteobacterium
           HTCC2148]
          Length = 424

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/229 (8%), Positives = 62/229 (27%), Gaps = 19/229 (8%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDE----VGIEDEVMQLIRLSS 57
            ++   + +  +       + H++ +P+  I   LE  L +           ++ +   +
Sbjct: 189 SDVTEVVRTEQMRTDFVGNVSHELRTPLTVITGYLETFLGDVSSLPAPYARGLEQMAGQA 248

Query: 58  MSAIIRLKFMRL-----AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
                 LK +       +  +    D +     + ++ ++  ++     +       +  
Sbjct: 249 RRMESLLKDLLWLSKIESTEHRVKNDQVDVPALLVELADEISSIYPDRPLQLEISCQEGI 308

Query: 113 RERAKILLNLFMVAH----ASLPRGGKVTISVQDSKNENIFSLKINGNLA---RFPEKFT 165
               + L +                G+V  S +         +   G      +FP    
Sbjct: 309 LGEYRELYSAVSNLVLNGYKYSGPDGRVFASWRAEAGCIRLDVVDQGIGIDPVQFPRLTE 368

Query: 166 QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +    +   +       +    V  +A  +   L  +         S +
Sbjct: 369 RFYRVDESRSLASGGTGLGLAIVKHVATAHGAELKIDSKPGQGSTFSLV 417


>gi|186894665|ref|YP_001871777.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis PB1/+]
 gi|186697691|gb|ACC88320.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis PB1/+]
          Length = 957

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 462 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 521

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 522 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 581

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 582 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 640

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 641 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 699


>gi|170025068|ref|YP_001721573.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis YPIII]
 gi|169751602|gb|ACA69120.1| integral membrane sensor hybrid histidine kinase [Yersinia
           pseudotuberculosis YPIII]
          Length = 957

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 462 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 521

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 522 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 581

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 582 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 640

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 641 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 699


>gi|168240551|ref|ZP_02665483.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
 gi|194449609|ref|YP_002044735.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194407913|gb|ACF68132.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|205339959|gb|EDZ26723.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL486]
          Length = 894

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|218234881|ref|YP_002365770.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
 gi|218162838|gb|ACK62830.1| sensor histidine kinase/response regulator [Bacillus cereus B4264]
          Length = 896

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 61/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E    +   + ++L  +  
Sbjct: 482 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 541

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 542 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 601

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+    
Sbjct: 602 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETTNLSHDMQSISKDWITI 661

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 662 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 721

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 722 EGSTFTVYIP 731


>gi|167469186|ref|ZP_02333890.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis FV-1]
          Length = 850

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 431 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 490

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 491 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 550

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 551 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 609

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 610 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 668


>gi|165924538|ref|ZP_02220370.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229841162|ref|ZP_04461321.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229843267|ref|ZP_04463413.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229903349|ref|ZP_04518462.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|165923598|gb|EDR40730.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|229679119|gb|EEO75222.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|229689614|gb|EEO81675.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. India
           195]
 gi|229697528|gb|EEO87575.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Orientalis str. PEXU2]
          Length = 949

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 454 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 513

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 514 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 573

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 574 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 632

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 633 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 691


>gi|162418760|ref|YP_001605841.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Angola]
 gi|162351575|gb|ABX85523.1| sensor kinase protein RcsC [Yersinia pestis Angola]
          Length = 949

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 454 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 513

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 514 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 573

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 574 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 632

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 633 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 691


>gi|153948861|ref|YP_001401729.1| RcsB family transcriptional regulator [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960356|gb|ABS47817.1| sensor kinase protein RcsC [Yersinia pseudotuberculosis IP 31758]
          Length = 949

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 454 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 513

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 514 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 573

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 574 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 632

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 633 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 691


>gi|153005096|ref|YP_001379421.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
 gi|152028669|gb|ABS26437.1| multi-sensor signal transduction histidine kinase [Anaeromyxobacter
           sp. Fw109-5]
          Length = 716

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 18/216 (8%), Positives = 54/216 (25%), Gaps = 25/216 (11%)

Query: 23  CHDIISPIGAIHN-------SLELLDEVGIEDEVMQLIRLSSMSAIIRLK---------- 65
            H++ +P+  +H        ++  L      + ++  +   +       +          
Sbjct: 497 SHELRTPLTPLHLQMKALQRAVSALQGSPRREALLDRLGTCARQVDRMTRLVANLLDVTR 556

Query: 66  ----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLN 121
                + +        + +  L    +           +Q+           +  ++L N
Sbjct: 557 LHAGRLEVEREPFELGELVADLAGRFRDELTRSGRLLELQLEPAVHGRWDRLKLDQVLTN 616

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDS 178
           L   A     +G       ++  +     +  +G      +    F +   G        
Sbjct: 617 LVSNAVRYGGQGPVSVTLRREHDDAV-LVVADSGIGIAPDDVALVFDRYHKGTNSRAHGG 675

Query: 179 HDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +  Y    +   +   +  E       V +  L 
Sbjct: 676 LGLGLYITRRIVEAHGGTIGVESRLGEGSVFTVRLP 711


>gi|16763778|ref|NP_459393.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62179009|ref|YP_215426.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167551796|ref|ZP_02345549.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992243|ref|ZP_02573341.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232367|ref|ZP_02657425.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168240216|ref|ZP_02665148.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168465483|ref|ZP_02699365.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194442327|ref|YP_002039638.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194448403|ref|YP_002044431.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470414|ref|ZP_03076398.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197264823|ref|ZP_03164897.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|224582235|ref|YP_002636033.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911468|ref|ZP_04655305.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16418902|gb|AAL19352.1| sensory kinase in two-component regulatory system with PhoB,
           regulates pho regulon [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62126642|gb|AAX64345.1| sensory kinase in two-component regulatory system with PhoB,
           regulates pho regulon [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194400990|gb|ACF61212.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194406707|gb|ACF66926.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456778|gb|EDX45617.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195631736|gb|EDX50256.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197243078|gb|EDY25698.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205323434|gb|EDZ11273.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329541|gb|EDZ16305.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333420|gb|EDZ20184.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340126|gb|EDZ26890.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224466762|gb|ACN44592.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261245681|emb|CBG23477.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992106|gb|ACY86991.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157010|emb|CBW16493.1| phosphate regulon sensor protein PhoR [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312911431|dbj|BAJ35405.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225122|gb|EFX50183.1| Phosphate regulon sensor protein PhoR SphS [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322713468|gb|EFZ05039.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323128715|gb|ADX16145.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987346|gb|AEF06329.1| phosphate regulon sensor protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 431

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 67/215 (31%), Gaps = 21/215 (9%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           + + H++ +P+  +   LE++ E  +E    +    +      R++ +         +++
Sbjct: 209 ANVSHELRTPLTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEA 268

Query: 80  LIGLGDIEQVIEDFI--------------AVDKRVQVSWTGEKIDLSRERAKILLNLFMV 125
              L   E+V    +                    +V  +   +    +    + NL   
Sbjct: 269 APALLLNEKVDVPMMLRVVEREAQTLSQQKHTFTFEVDDSLSVLGNEEQLRSAISNLVYN 328

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ESTIDSH 179
           A    P G  +T+S +   +   F ++ NG      E   ++ +                
Sbjct: 329 AVNHTPAGTHITVSWRRVAHGAEFCIQDNGPGI-AAEHIPRLTERFYRVDKARSRQTGGS 387

Query: 180 DIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +    V    + ++ RL  +         S +L 
Sbjct: 388 GLGLAIVKHALNHHESRLEIDSSPGKGTRFSFVLP 422


>gi|45440759|ref|NP_992298.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis biovar Microtus str. 91001]
 gi|51595601|ref|YP_069792.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pseudotuberculosis IP 32953]
 gi|45435617|gb|AAS61175.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis biovar Microtus str. 91001]
 gi|51588883|emb|CAH20497.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pseudotuberculosis IP 32953]
          Length = 957

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 462 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 521

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 522 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 581

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 582 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 640

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 641 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 699


>gi|22126848|ref|NP_670271.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis KIM 10]
 gi|108806928|ref|YP_650844.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Antiqua]
 gi|108812920|ref|YP_648687.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Nepal516]
 gi|149366792|ref|ZP_01888826.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|218928376|ref|YP_002346251.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis CO92]
 gi|270487159|ref|ZP_06204233.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|21959879|gb|AAM86522.1|AE013898_5 sensor for ctr capsule biosynthesis [Yersinia pestis KIM 10]
 gi|108776568|gb|ABG19087.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Nepal516]
 gi|108778841|gb|ABG12899.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Antiqua]
 gi|115346987|emb|CAL19878.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CO92]
 gi|149291166|gb|EDM41241.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis CA88-4125]
 gi|270335663|gb|EFA46440.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
          Length = 957

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 462 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 521

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 522 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 581

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 582 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 640

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 641 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 699


>gi|165938304|ref|ZP_02226862.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166009958|ref|ZP_02230856.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166211542|ref|ZP_02237577.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167400347|ref|ZP_02305860.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419557|ref|ZP_02311310.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|294503231|ref|YP_003567293.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
 gi|165913682|gb|EDR32301.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165991354|gb|EDR43655.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166207313|gb|EDR51793.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962298|gb|EDR58319.1| sensor kinase protein RcsC [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167050296|gb|EDR61704.1| sensor kinase protein RcsC [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|262361270|gb|ACY57991.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D106004]
 gi|262365193|gb|ACY61750.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis D182038]
 gi|294353690|gb|ADE64031.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Z176003]
          Length = 926

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 431 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 490

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 491 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 550

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 551 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 609

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 610 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 668


>gi|150390093|ref|YP_001320142.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
 gi|149949955|gb|ABR48483.1| histidine kinase [Alkaliphilus metalliredigens QYMF]
          Length = 451

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 61/218 (27%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLE--LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
             + + H++ +P+ ++    E  L+ E G      + +           K +        
Sbjct: 227 FVANVSHELKTPLTSMKLLSESLLMQEGGDIAIYREFLSDIDTEIDRLNKIIESLLMLVD 286

Query: 76  SVDSLIGLGDIEQVIEDFIAV----------DKRVQVSWTGEKIDLSR----ERAKILLN 121
             +  + +      +   +             K++++               +  + L N
Sbjct: 287 LNEDKLTIEYEITYVNYLVEKVTQSIKPLAEQKKIKIIINQWHKIQIYLDQGKIHQALTN 346

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGN--VESTI 176
           +   A      GGKV I++    N  I  +  NG      E    F +    +       
Sbjct: 347 IIYNAVKYTEDGGKVVITLYREGNRAIIKIADNGIGISEEELPYIFERFYRVDSARSRKT 406

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +       + H ++  +  E  +     +   L 
Sbjct: 407 GGSGLGLSISEQIIHLHQGTIEVESKEHKGTTVYVKLP 444


>gi|162418891|ref|YP_001605672.1| aerobic respiration control sensor protein ArcB [Yersinia pestis
           Angola]
 gi|162351706|gb|ABX85654.1| putative aerobic respiration control sensor protein ArcB [Yersinia
           pestis Angola]
          Length = 778

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 63/217 (29%), Gaps = 22/217 (10%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           S I H++ +P+  I     +L +  ++ E ++ ++   +SAI                  
Sbjct: 288 STISHELRTPLNGIVGLSRILLDTELDAEQLKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

Query: 80  LIGLGDIEQVIEDFI----------------AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
            +   +       F+                      Q+    + I       +IL NL 
Sbjct: 348 KVQFDNQPVDFTGFMADLENLSGLLVQPKGLKFIMEPQLPLPEKVIADGTRLRQILWNLI 407

Query: 124 MVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE------KFTQIVDGNVESTID 177
             A     +G  V    ++  +  IF ++ +G      E       + Q+ D N      
Sbjct: 408 GNAVKFTQQGKIVVRVRREGNDRLIFEVEDSGMGIPEDEQDKIFAMYYQVKDRNGGRPAT 467

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              I       LA      +  +         +  ++
Sbjct: 468 GTGIGLAVSKRLAQSMGGDITVKSTQGVGSCFTLTIK 504


>gi|145599745|ref|YP_001163821.1| hybrid sensory kinase in two-component regulatory system with RcsB
           and YojN [Yersinia pestis Pestoides F]
 gi|145211441|gb|ABP40848.1| two component sensor kinase/response regulator protein RcsC
           [Yersinia pestis Pestoides F]
          Length = 926

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 68/239 (28%), Gaps = 26/239 (10%)

Query: 1   MAKNICFNLSSMDLVA----LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M +++    ++ +  +    +  + + H++ +P+  I  +L+LL    +   V +L+   
Sbjct: 431 MEESLQEMATAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPQGVDRLVTAM 490

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAV----------------DKRV 100
           + S+ + LK +     ++      + +   E    + I                     +
Sbjct: 491 NNSSGLLLKIISDILDFSKIESEQLKIEPSEFSTVEVITHITANYLPLVVKKRLGLYCFI 550

Query: 101 QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
           +               +++ NL   A       G + + V+       F ++  G     
Sbjct: 551 EPDVPRLIEGDPVRLQQVISNLLNNAIKFTDT-GCIILQVRVRDCYLEFRVRDTGVGIDS 609

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E               +       +       L +     +          + +  + 
Sbjct: 610 REINQLFDPFFQVGTGVQRHFQGTGLGLAICEKLVNLMDGDVEVISELGMGSIFAIRIP 668


>gi|313633174|gb|EFS00057.1| sensor histidine kinase [Listeria seeligeri FSL N1-067]
          Length = 479

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 58/235 (24%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRLS 56
           +  +               + + H++ +P+  I    E L          D  + LI   
Sbjct: 239 LEASQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTEGLVNDIIPKTETDRCIALIDTE 298

Query: 57  SMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +      +             +RL      S + L  + +    +      + ++ V   
Sbjct: 299 ARRLTKLVNENLDYEKIRSNKIRLQKTRFNSREFLALIKEQLDYVATEKGNEIKLDVDGE 358

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                      ++ +N+   +      G       QD K     ++   G      E   
Sbjct: 359 MNIYADYDRLTQVFINIVKNSVQFTENGQITLAGYQDYKESV-LTITDTGIGMNTEELEQ 417

Query: 163 KFTQIVDGNVES---TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            + +    ++           I    V  L   +   +      +     +  L 
Sbjct: 418 IWERFYKADMSRTNTAFGESGIGLSIVKQLIEYHDGTITVSSEPNKGTCFTIRLP 472


>gi|312870315|ref|ZP_07730443.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus oris PB013-T2-3]
 gi|311094199|gb|EFQ52515.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Lactobacillus oris PB013-T2-3]
          Length = 492

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 61/235 (25%), Gaps = 22/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLS 56
           +  +     S  +      +   H++ +P+  I+  LE L         +   ++L++  
Sbjct: 244 LQSSHEEIHSQEERRRQFMANAAHEMRTPLTTINGILEGLQYDVIPEEDKQHSIELMQNE 303

Query: 57  SMSAIIRLKFMRLAFGYTGSV-----------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           +   I  +           +              L  L +              + V   
Sbjct: 304 TKRLIRLVNDNLNYEKIRTNQISMERKLFDASAVLQNLKEQLGKKARAQGDQLELSVPDG 363

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP---- 161
                      +I+ N+   A       G + IS Q   +   F ++ NG          
Sbjct: 364 LLVYADYDRFVQIMFNIIQNAIQFTEN-GVIRISGQQRGHGTQFVVQDNGIGMTAEQQDN 422

Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             E++ +     + +      +    V  L   +  ++            +    
Sbjct: 423 IWERYYKADKSRMNTKYGESGLGLAIVHQLVQLHGGKITVTSELGKGSTFTIFFP 477


>gi|302344083|ref|YP_003808612.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
 gi|301640696|gb|ADK86018.1| integral membrane sensor signal transduction histidine kinase
           [Desulfarculus baarsii DSM 2075]
          Length = 354

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/203 (9%), Positives = 62/203 (30%), Gaps = 13/203 (6%)

Query: 24  HDIISPIGAIHNSLE----LLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDS 79
           H++ +P+ AI    +     L++       +++I          ++ +            
Sbjct: 141 HEMKTPLIAIGGFAQQIYRTLEDDHPHRAKLKIIVDQVAHMEQLMREVLDYARPMQLRLE 200

Query: 80  LIGLGDIEQVIE-----DFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMVAHASLP 131
              L ++ +                +++    + ++   ++    ++LLNL   A  + P
Sbjct: 201 RAYLREVVEEARSLASLFAEQSGVSLELELPPQPVEALIDKGRLRQVLLNLMQNAIQASP 260

Query: 132 RGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAH 191
           RG +V +S     +  + ++   G      +   +I +    +      +       +  
Sbjct: 261 RGARVIVSTAREGDFGLITVGDQGCGIAAEDL-ARIFNPFFTTKRQGTGLGLAVAQKIVQ 319

Query: 192 ENKIRLLPEIIDDHNVVLSALLE 214
            +   +            +  L 
Sbjct: 320 AHGGGIESRSAPGQGSSFTVRLP 342


>gi|238918266|ref|YP_002931780.1| hybrid sensory histidine kinase TorS [Edwardsiella ictaluri 93-146]
 gi|238867834|gb|ACR67545.1| tmao reductase sytem sensor tors, putative [Edwardsiella ictaluri
           93-146]
          Length = 921

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 61/232 (26%), Gaps = 22/232 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           A+    N       A L + + H+I +P+  I  + +LL    +       ++  + S  
Sbjct: 425 ARAEAENADRAK-SAFLAA-MSHEIRTPLHGILGTAQLLAGQQLSPRCRDYVQAINDSGE 482

Query: 62  IRLKFMRLAFGYT------GSVDSLIGLGDIEQV------------IEDFIAVDKRVQVS 103
             L  +     Y+       SV          Q+             +  + +D      
Sbjct: 483 SLLAVLNDVLDYSAIEAGSHSVALNDEPFAPRQLLDSALRLAEGRLQQRLLRLDHDYADV 542

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                        +I++NL   A     R G + +S    +     +++ +G      ++
Sbjct: 543 LPTWLQGDPCRIRQIVMNLLNNALRFTER-GVIRVSCGCDETHWWIAVQDSGCGIDPAQQ 601

Query: 164 FTQIVDGNV-ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +      +       LA      L               L 
Sbjct: 602 TAIFQPFVQLSARRGGTGLGLAICRGLAQAMVGTLEVSSTPGKGSRFCLRLP 653


>gi|209964323|ref|YP_002297238.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
 gi|209957789|gb|ACI98425.1| sensor histidine kinase, putative [Rhodospirillum centenum SW]
          Length = 437

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 19/220 (8%), Positives = 66/220 (30%), Gaps = 11/220 (5%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           M + +   +        + + I HD+ +P+  +    E +D+  + +++++ ++      
Sbjct: 217 MQRRLKAFVED---RTRMLAAISHDLRTPLTRMRLRAEFIDDDTVREKMLEDLQEMEAMI 273

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              L F R                 + ++ E        V +      + +   R  +  
Sbjct: 274 GATLAFAREEASQEAIEPLD-LGSLVAKLAESAREAGHPVGLLPPARPVRIMGRRTALKR 332

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV------ES 174
            L  +   ++  GG   +++  +    + ++  +G      E    +             
Sbjct: 333 ALGNLMDNAVKYGGAAEVALTCTGESVVVTIDDHGPGIPEAE-MENVFRPFYRLEASRSR 391

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       +   +   +      +  + ++ +L 
Sbjct: 392 DTGGTGLGLSVANDVVRAHGGEIRLSNRPEGGLRVAVVLP 431


>gi|223936057|ref|ZP_03627971.1| GAF sensor signal transduction histidine kinase [bacterium
           Ellin514]
 gi|223895279|gb|EEF61726.1| GAF sensor signal transduction histidine kinase [bacterium
           Ellin514]
          Length = 580

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 69/229 (30%), Gaps = 19/229 (8%)

Query: 5   ICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLD-----------EVGIEDEVMQ 51
                 +  L AL  L + + H+I +P+  +      LD           +  I  + M+
Sbjct: 350 EEQLRQNEKLSALGLLAAEVAHEIRNPLTVMKMLYHSLDLKFPAGDPRNKDAEIIGQKME 409

Query: 52  LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL 111
           L+       +   +     F      + +  LG + +       V     +      +  
Sbjct: 410 LLNKIVEQILDFARTTEPTFAEVHLNELIEELGLLVRHKLRNQNVQFIHHLDSDLPAVMA 469

Query: 112 SRER-AKILLNLFMVAHASLPRGGKVTISVQDSKN-----ENIFSLKINGNLARFPEKFT 165
                 +  LNL + A  ++P GGK+TI+ +  +      +     K  G      ++  
Sbjct: 470 DATHLEQAFLNLILNAAQAMPNGGKLTITTRAIEGGGKTLQVAVDFKDTGEGMTEEQRRR 529

Query: 166 QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                   +      +    V  +   +   L  +        +S +L 
Sbjct: 530 AFSSVLSTTKAKGTGLGLAIVGRVIETHHGELKLKSAPGRGTTISVILP 578


>gi|170731064|ref|YP_001776497.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
 gi|167965857|gb|ACA12867.1| histidine kinase/response regulator hybrid protein [Xylella
           fastidiosa M12]
          Length = 558

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         + ++  L     S + H++ +P+  I    ELL    +E     + + +I
Sbjct: 293 LKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRIEEQHPCYKGLSVI 352

Query: 54  RLSSMSAIIRLKFMRLAFGYT------------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+      +  M                           +G  EQV+E          
Sbjct: 353 ASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRA 412

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    +I  NL   A    P  G + + +    +    S+  +G+     
Sbjct: 413 PEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAE 472

Query: 162 EKFT---QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
                  +    +  +T       +    V  L   +   +           + +  L +
Sbjct: 473 FLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSLLR 532


>gi|158521355|ref|YP_001529225.1| histidine kinase [Desulfococcus oleovorans Hxd3]
 gi|158510181|gb|ABW67148.1| histidine kinase [Desulfococcus oleovorans Hxd3]
          Length = 576

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 74/244 (30%), Gaps = 32/244 (13%)

Query: 2   AKNICFNL-SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV--------------- 43
            + +   L  +  L ++  L + I H+I +P+  I +   ++ ++               
Sbjct: 331 RRELKAQLFHAAKLASVGELAAGIAHEINNPLALIASQCVVIRDLFDPELGGHAPPFGQE 390

Query: 44  --GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
                 + ++++  +          +  +   T     L  +  I   + D     +   
Sbjct: 391 AVDQMIKELEIVESAVFRTKDITYKLLSSARKTEPKMELCDIHRILDEVVDGFLERECHI 450

Query: 102 VSWTGEKI---------DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLK 152
            +    K            + +  +++LNL   A  ++   GK+T+      N  + ++ 
Sbjct: 451 ANIDIVKEYASEVPPVLMDADQMRQVILNLVNNAVDAIEGPGKITLKTAVDNNNVVVTVS 510

Query: 153 INGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
             G      E   +I      +        +     + +    + R+  + +        
Sbjct: 511 DTGKGI-PYEVMGKIFTPFFTTKEAGKGTGLGLAISLGIVEAMEGRMDVQSLPGAGTSFI 569

Query: 211 ALLE 214
            +L 
Sbjct: 570 IILP 573


>gi|189423630|ref|YP_001950807.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
 gi|189419889|gb|ACD94287.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
          Length = 704

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 56/225 (24%), Gaps = 27/225 (12%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR------------ 63
           +   + + H+I +P+  +     LL    +  E  Q +     SA               
Sbjct: 335 SEFLANMSHEIRTPMNGVIGMAHLLGTTELSPEQEQYLENIENSANSLITLIGDILDLSR 394

Query: 64  ----LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
                  +             +      Q+ +  I++   +                +IL
Sbjct: 395 IEAGRMLLENVDFSLRRCIQELLGSQQFQINQKKISIHTEIAEDVPDLLRGDQLRTRQIL 454

Query: 120 LNLFMVAHASLPRGGKVTISV----QDSKNENIFSLKINGNLARFPEKFTQIVDGN---- 171
           LNL   A      GG    +     ++++     ++   G     P+   +I        
Sbjct: 455 LNLLGNAIKFTEHGGVTITAQLVTSEENRVLIHLAVSDTGIGM-PPDLLERIFAPFEQAD 513

Query: 172 --VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                      +       LA     R+  E   +        L 
Sbjct: 514 NSTTRRYGGSGLGLAICRRLAELMGGRIWAESGAEGGSTFHVELP 558


>gi|187478274|ref|YP_786298.1| two component sensor kinase for capsular biosynthesis [Bordetella
           avium 197N]
 gi|115422860|emb|CAJ49388.1| putative two component sensor kinase for capsular biosynthesis
           [Bordetella avium 197N]
          Length = 1142

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 60/241 (24%), Gaps = 28/241 (11%)

Query: 1   MAKNICFNLSSMDLV-----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
           M +       + D       A L + + H+I +P+ AIH +LELL    ++      +  
Sbjct: 496 MERVSQEARHAADSANAAKSAFLAA-MSHEIRTPLNAIHGNLELLSHSALDSAQRAHVDT 554

Query: 56  SSMSAIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR 99
              ++                      +         + +   +          + +   
Sbjct: 555 IRSASDSLLSIVSDVLDFSKIEAGELRLEHLEYDIQDIAARALIMFSTTARAKGLVLGGE 614

Query: 100 VQVSWTGEKIDLSRERAKILLNLFMVAHASLPR-GGKVTISVQDSKNENIFSLKINGNLA 158
             +  T          A+++ NL   A          + ++   +  + + +++ +G   
Sbjct: 615 FGLHTTQPMRGDPTRVAQVINNLLSNAVKFTAAGKVTLRMTQDATPPQLVLTVEDSGIGM 674

Query: 159 RFPEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +                       +       L+      L            +  L
Sbjct: 675 SPEQMSMLFQAFTQADITINRRFGGTGLGLALCSRLSQAMGGTLSVTSKAGQGSCFTLRL 734

Query: 214 E 214
            
Sbjct: 735 P 735


>gi|83593012|ref|YP_426764.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Rhodospirillum rubrum ATCC 11170]
 gi|83575926|gb|ABC22477.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Rhodospirillum rubrum ATCC 11170]
          Length = 366

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLD--EVGIEDEVMQLIRL 55
           MA  I   +S  +       + + + H++ +P+  I  + +LL+      + ++++LI  
Sbjct: 125 MALKIGQQMSHRNAARSVTAMAALLAHEVKNPLSGIRGAAQLLEANLPEEDHQLVRLIID 184

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL---- 111
            +   +  +  M +           + +  + + +           V +           
Sbjct: 185 ETDRIVALVDRMEVFSDNMPLAREAVNIHRVLEHVRMVAENGFARGVRFVETYDPSLPAV 244

Query: 112 ---SRERAKILLNLFMVAHASLPRGGKVTISVQDS--------------KNENIFSLKIN 154
                +  ++ LNL   A  ++  GG   +                       + S++ N
Sbjct: 245 LGSRDQLIQVFLNLIKNAAEAIGPGGGEIVLSTAYQQGLRLRVPGGEVTDLPLVISVRDN 304

Query: 155 GNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           G      +    + D  V +      +    V  + +++   +  + +     V + +L 
Sbjct: 305 GTTGISEDLRGNLFDPFVTTKPKGSGLGLPLVAKIVNDHGGIIEFDSVPGR-TVFTVMLP 363


>gi|20091183|ref|NP_617258.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
 gi|19916292|gb|AAM05738.1| sensory transduction histidine kinase [Methanosarcina acetivorans
           C2A]
          Length = 725

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/243 (10%), Positives = 60/243 (24%), Gaps = 30/243 (12%)

Query: 2   AKNICFNLSSMDLV-------ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR 54
            K+    L +  L        +   S + H++ +P+ A+    ++L+E G      +  R
Sbjct: 476 KKSEEKMLQAKILAENSNRSKSEFLSNMSHELRTPLNAVIGFADILNEEGFGPLNKKQKR 535

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV------------ 102
                +      ++L            G  + +            ++             
Sbjct: 536 FVGNISTSGKHLLKLINEILDLSKIEAGKMEFKCTEFSVKEKFDEIKDILFPVFSKKKIR 595

Query: 103 ------SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGN 156
                            +  ++L NL   A      GG V +S + + +    S+K  G 
Sbjct: 596 IEFEIGDGITTIYSDEGKFVQVLYNLVSNAIKFTEEGGFVKVSARKNGDMLQLSVKDTGI 655

Query: 157 LARFPEKFTQIVDG-----NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                +                   +   +    V  +       +              
Sbjct: 656 GITEEDLMKIFHPFVQVDSFSTRQYEGTGLGLALVDQMVQLMGGEICVFSQPGIGSEFIC 715

Query: 212 LLE 214
           ++ 
Sbjct: 716 MIP 718


>gi|186681478|ref|YP_001864674.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
 gi|186463930|gb|ACC79731.1| GAF sensor signal transduction histidine kinase [Nostoc punctiforme
           PCC 73102]
          Length = 683

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 69/240 (28%), Gaps = 27/240 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE---VGIEDEVMQLIRLSS 57
           +   +    ++  L +   + I H++++P+  +      L       +       ++   
Sbjct: 437 LRDALLAAEAANRLRSEFLATISHELLTPLTYVIGMSSTLLRWPLGELSQRQRDYLQTIH 496

Query: 58  MSAIIRLKFMRLAFGYTGSV------------DSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
            S    L+ +      +                  +    +E +     +    + +   
Sbjct: 497 DSGEHLLEMINDILDLSQIEAGKTALNISEFSLVNVAEKALESLRNKATSEQINLNLDLQ 556

Query: 106 GEKIDLSR-----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
            +             A+IL NL   A    P  G VT+ +    +  IF ++  G   R 
Sbjct: 557 IDPSRDRFTADAERVAQILSNLLTNAIKFTPESGNVTLRLWVEDDTAIFQVEDTGIGIRE 616

Query: 161 ------PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  EKF Q+         +   +       L   ++ R+  E       + +  + 
Sbjct: 617 EQLPLLFEKFQQLDTPY-RRRYEGTGLGLALTKQLVELHRGRIEVESTISIGSIFTVWIP 675


>gi|298249478|ref|ZP_06973282.1| response regulator receiver sensor signal transduction histidine
           kinase [Ktedonobacter racemifer DSM 44963]
 gi|297547482|gb|EFH81349.1| response regulator receiver sensor signal transduction histidine
           kinase [Ktedonobacter racemifer DSM 44963]
          Length = 432

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/240 (9%), Positives = 62/240 (25%), Gaps = 27/240 (11%)

Query: 2   AKNICFNLSSMDLVAL------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQL--- 52
            +      +++ L ++      +   + H++  P+ ++    +L+     + +  +    
Sbjct: 154 QRTEELQQANVALASVNESREQMLRMVVHEMAGPLTSVKGLTQLMKRQVRQGQSGERLVQ 213

Query: 53  --------IRLSSMSAIIRLKFMRLAFGYTGSVDSLIG---LGDIEQVIEDFIAVDKRVQ 101
                   ++              +                L            V     
Sbjct: 214 NFDTVEGALKRMERLIADLHDAAHIQMQQFHVQREQTDLVALCQQAIDEFACERVAPTAS 273

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +   +  +++LLNL   A    P    +T++ Q  + E   +++  G      
Sbjct: 274 TEDQCIGVVDPQRLSQVLLNLLNNARKYSPSERPITVTFQAREQEICIAVQDEGAGVAPD 333

Query: 162 EKFTQIVD-------GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                          G    ++    +  Y    +  E+  RL  +         S  L 
Sbjct: 334 ALQHIFEQFYRVGGVGGQPGSVKGLGLGLYIARAIVEEHGGRLEVQSRLGQGSTFSINLP 393


>gi|289662933|ref|ZP_06484514.1| two-component system sensor protein PilS [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 537

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 69/224 (30%), Gaps = 18/224 (8%)

Query: 8   NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSAI 61
              S+ L A+    + + H+I +P+ AI  + +LL+E       +  ++Q+I        
Sbjct: 307 RAESLTLSAMGRFSASLAHEIRNPLAAISYASQLLEESPDIGDADRRLLQIIHQQCQRTN 366

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW--------TGEKIDLSR 113
             ++ +        +    + L    +           ++           T   +   +
Sbjct: 367 GIVESVLALARRERATPDNLDLAAFVRRFVVEYRQTLSMETDILEASMQGSTVHALVDPK 426

Query: 114 ERAKILLNLFMVAHAS---LPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDG 170
              +IL  L   A      +    +V + V+  +   + ++   G          Q+   
Sbjct: 427 HLHQILTALVHNALKYGRVMDEPARVKLRVERVERMAVINVMDRGPGI-PEAVAAQLFRP 485

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              ++     +  Y    L   N+ +L    I          L+
Sbjct: 486 FYTTSEHGTGLGLYIAQELCRANQAQLEYVSIPGGGACFRISLQ 529


>gi|262375131|ref|ZP_06068365.1| two-component system sensory histidine kinase [Acinetobacter
           lwoffii SH145]
 gi|262310144|gb|EEY91273.1| two-component system sensory histidine kinase [Acinetobacter
           lwoffii SH145]
          Length = 486

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 64/208 (30%), Gaps = 6/208 (2%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRL 69
            +     ++ + I HD+ +P+  I  S E++ +     E +        + + +      
Sbjct: 256 QTERERRIMLAGISHDLRTPLTRIRLSAEMMPDEDFLKEGLIYDVEDMDAILDQFISYMR 315

Query: 70  AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHAS 129
                   D+ + +   E V +      +         +        +++ NL   +   
Sbjct: 316 DGSDEEPQDTNVNVLLQELVKQFKPLDIRFTPQDIPTIQARSMS-LKRLIGNLINNSKRY 374

Query: 130 LPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQFYYV 186
                +++  V+  +++ +  +  +G      +        V GN   T+    +    V
Sbjct: 375 GSEPIELSAHVE--EDQLLICVADHGEGIPEDQIEALMQPFVRGNSARTVQGSGLGLAIV 432

Query: 187 ILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +   +  +L      +  +     L 
Sbjct: 433 KRIVDIHHGQLRIHNRPEGGLEAIISLP 460


>gi|241762011|ref|ZP_04760095.1| integral membrane sensor signal transduction histidine kinase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|241373477|gb|EER63064.1| integral membrane sensor signal transduction histidine kinase
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
          Length = 421

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 17/221 (7%), Positives = 60/221 (27%), Gaps = 24/221 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVG------IEDEVMQLIRLSSMSAIIRLKFMRL-- 69
             +   H++ +P+  +   +E L++             + ++   +      +  +    
Sbjct: 194 FVANTSHELRTPLATLSGFIETLEDDDVIKERDTRHHFLSIMAREAKRMQNLVDDLMSLS 253

Query: 70  ---------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK-IDLSRERAKIL 119
                              +  +    Q      A    ++   + +       E  ++L
Sbjct: 254 RIEAGKFSLPNDIVHMSPVVEEVVSNIQASGQAKAAQITLKNHLSSDSLQGDRAELTQLL 313

Query: 120 LNLFMVAHASLPRGGKVTIS-VQDSKNENIFSLKINGNLARFPEKF---TQIVDGNVEST 175
            N+   A     + G + ++      +    ++   G+   F        +    +   +
Sbjct: 314 YNIIGNALKYGRKDGIIKVALDNTDDHRIKLAIADEGDGIPFHHIPRLTERFYRVDNSRS 373

Query: 176 I--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  +    V  +   ++  LL + +      ++  L 
Sbjct: 374 RALGGTGLGLAIVKQIVEHHRGELLIDSLPGKGTTVTVFLP 414


>gi|238911648|ref|ZP_04655485.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
          Length = 894

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|225174333|ref|ZP_03728332.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170118|gb|EEG78913.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 433

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/235 (10%), Positives = 67/235 (28%), Gaps = 21/235 (8%)

Query: 1   MAKNICFNLSSMDLVALL----CSRICHDIISPIGAIHNSLELLDEVGI-EDEVMQLIRL 55
           + +N       +  +  L     + + H+  +PI +I     LL +  + E E  +   +
Sbjct: 194 LTENFNRMTRELKNIEYLRKDFVTNVSHEFKTPIASIQGFARLLQQGMLSETERQEYTDI 253

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQ----------VIEDFIAVDKRVQVSWT 105
                             +   +                    ++ + +  +K ++    
Sbjct: 254 IVNETKRLSNLSANILKLSKLENQEFVEKQTAFSLDEQIRKSILLLEHLWTEKNIEFDIE 313

Query: 106 GEKIDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP- 161
            EK+    +     ++ LNL   A        K+ +S++ + +     +   G       
Sbjct: 314 LEKVTYHGDEELLEQVWLNLLGNAIKFSHHDSKIFVSLEQNTSSIKVQITDYGIGISEDA 373

Query: 162 --EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               F +   G+     + + +    V  +      ++  E         +  L 
Sbjct: 374 ISRIFEKFYQGDKTHLNEGNGLGLPLVKRILDLFDGKIRVESKPQQGSTFTVELP 428


>gi|216263388|ref|ZP_03435383.1| putative sensory transduction histidine kinase [Borrelia afzelii
           ACA-1]
 gi|215980232|gb|EEC21053.1| putative sensory transduction histidine kinase [Borrelia afzelii
           ACA-1]
          Length = 382

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 74/227 (32%), Gaps = 20/227 (8%)

Query: 8   NLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMS 59
            + ++         I H+I +P+GAI  +L+LL +            +   ++I+     
Sbjct: 146 RVEALASFTRHARNIAHEIKNPLGAIDINLQLLKKEIKKQKIKNDKAENYFKVIKEEINR 205

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGD-----IEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
               +    L             +        E +  +    + ++ ++       L  E
Sbjct: 206 VDKIVTEFLLTVRPIKINLQEKDIKQVINSVCELLNPELENKNIKLLLNLNKISNILIDE 265

Query: 115 R--AKILLNLFMVAHASL----PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIV 168
           +   ++++N+   A  +L        K+ I + +  N+   ++K NGN     E   +I 
Sbjct: 266 KLLKQVIINIIKNAGEALLETKKEIKKIEIFLFEKDNKIYINIKDNGNGI-KDEVKEEIF 324

Query: 169 DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +      I       +  E    +  E  +    + +  L K
Sbjct: 325 KPQFSTKEKGSGIGLTISYKIIKELGGEIFVESKEGKGTIFTITLPK 371


>gi|241661815|ref|YP_002980175.1| histidine kinase [Ralstonia pickettii 12D]
 gi|240863842|gb|ACS61503.1| histidine kinase [Ralstonia pickettii 12D]
          Length = 670

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 64/242 (26%), Gaps = 28/242 (11%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLE----LLDEV------GIEDE 48
           +       + +  L AL  + + I H++  P+ A+    +    LL+             
Sbjct: 421 LRATQDELVQASKLAALGQMAAGITHELNQPLAALRTFSDNTRILLERGQHGAATDNLQA 480

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQV-IEDFIAVDKRVQVSWTGE 107
           +  L             F   +      V   + L     +       V   +       
Sbjct: 481 IADLTERMGKITAQLKLFAGRSRRKVVDVQVRVALDHTLALLRPRLGDVALELHWRIPET 540

Query: 108 KIDLSRER---AKILLNLFMVAHASLPRGGKVTISVQD---------SKNENIFSLKING 155
           +  +  +     ++L+NL   A  ++           D           N+   +++ NG
Sbjct: 541 EAVVRADELKLEQVLINLIGNALDAISANEPARAGRIDITIGPIEGAPSNQLTIAVRDNG 600

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                P+    + +    +        +       +A +    L    +       +  L
Sbjct: 601 PGI-QPDAMPHLFEPFFTTKEIGQGLGLGLAISTSIARDFGGSLSAANVPGGGAQFTLTL 659

Query: 214 EK 215
            +
Sbjct: 660 VR 661


>gi|119489678|ref|ZP_01622437.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
 gi|119454415|gb|EAW35564.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
          Length = 568

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 74/264 (28%), Gaps = 51/264 (19%)

Query: 1   MAKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSL--------ELL---------- 40
           + +     + +  + +L  + + I H+I +PIG IH +L        ELL          
Sbjct: 295 LNETQTQLIQTEKMSSLGQMVAGIAHEINNPIGFIHGNLIHIESYAEELLNVVTLFREHR 354

Query: 41  -----------DEVGIED------EVMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGL 83
                      +E  ++       +++Q +R+ +      +  +R       +      L
Sbjct: 355 SQVSPEVTTLIEESDLDFIREDFPKILQSMRMGTDRICEIVLSLRNFSRLDEAQVKACDL 414

Query: 84  GDIEQVIEDFIAVDKRVQVSWTGEKI------DLSRERAKILLNLFMVAHASLPRGGKVT 137
            +  +     +      Q+                 +  ++ +N+   A  +L       
Sbjct: 415 HEGLESTLLLLNHRLNSQIDIVKNYGQIPEVACHPAQINQVFMNILSNAIDALLEQENQL 474

Query: 138 ISVQD-----SKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLA 190
                        E I  +  NG      E   ++ D    +        +       + 
Sbjct: 475 DKKIMILTESQDEEVIIRISDNGGGI-PAEILGKLFDPFFTTKPVGKGTGLGLAISYKII 533

Query: 191 HENKIRLLPEIIDDHNVVLSALLE 214
            +++ ++     +         L 
Sbjct: 534 EKHQGKIQVHSSEHEGTEFMITLP 557


>gi|16764073|ref|NP_459688.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|167992975|ref|ZP_02574070.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|197263765|ref|ZP_03163839.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|16419211|gb|AAL19647.1| sensory kinase in two-component regulatory system wtih KdpE
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
 gi|197242020|gb|EDY24640.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|205328851|gb|EDZ15615.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|261245968|emb|CBG23770.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267992441|gb|ACY87326.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157296|emb|CBW16784.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312911729|dbj|BAJ35703.1| sensor kinase KdpD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. T000240]
 gi|323129014|gb|ADX16444.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|332987640|gb|AEF06623.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 894

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|312217907|emb|CBX97854.1| similar to two-component histidine kinase [Leptosphaeria maculans]
          Length = 1300

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 32/242 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 720 QRNTAAREAAELANKTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDLTHAQREMLTIVHN 779

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + + +I   +   +                     V  
Sbjct: 780 LAGQLLTIIDDILDISKIEANRMVMEEIPFSMRGTLFNALKSLASRANERKLNLAYDVNH 839

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP-------RGGKVTISVQDSKNENIFSLKING 155
                 I  S    +I+LNL   A                        +    F++   G
Sbjct: 840 KVPDYVIGDSFRLRQIILNLVGNAIKFTELGEVKVAISMAQDQECGPDQYVFQFAVSDTG 899

Query: 156 NLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
              R           Q  DG+         +       L      R+  E       V  
Sbjct: 900 IGIRGDKLNLIFDTFQQADGSTTRKFGGTGLGLSISKRLVTLMGGRMWVESDFGKGSVFY 959

Query: 211 AL 212
             
Sbjct: 960 FT 961


>gi|317133438|ref|YP_004092752.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
 gi|315471417|gb|ADU28021.1| integral membrane sensor signal transduction histidine kinase
           [Ethanoligenens harbinense YUAN-3]
          Length = 479

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 60/225 (26%), Gaps = 21/225 (9%)

Query: 10  SSMDLVALLCSRICHDIISPIGAIHNSLELLDE-----VGIEDEVMQLIRLSSMSAIIRL 64
            +  L   L + I HD+ +P+  +    EL+ +             QLI   +    + +
Sbjct: 255 KTEQLRRDLIANISHDLRTPLTMVKMYAELIRDVSGGQTEKRTAHAQLIIDEADRLSLLI 314

Query: 65  KFMRL-----------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
           K M                     +    +     V+ +       +  +         R
Sbjct: 315 KDMLDLSKIQAGTESLKPVTFDLGEKARVILTRFAVLAERNGYRFSLDCAGDTAVTADER 374

Query: 114 ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLAR---FPEKFTQIVDG 170
           +  +++ NL   A         V++ V    +   FS+   G           + +    
Sbjct: 375 KIEQVIYNLVGNAVNYTGADKTVSLRVARQNDGVCFSVTDTGKGIPPEKCAHIWERYYMA 434

Query: 171 NVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
              +        +    V  +   +  R   E I         +L
Sbjct: 435 KETTRHRVVGTGLGLSIVKAILAAHHARFGVESIVGKGSTFWFVL 479


>gi|255099492|ref|ZP_05328469.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-63q42]
 gi|255305347|ref|ZP_05349519.1| two-component sensor histidine kinase [Clostridium difficile ATCC
           43255]
          Length = 307

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 56/218 (25%), Gaps = 20/218 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ------LIRLSSMSAIIRL 64
            L + + HD+ +P+ ++   LE ++      E   E   +       L            
Sbjct: 89  QLMTSLSHDVKTPLASLVGYLEAVESKIVVGEEKDEYIHVASNKAHYLKNFVENLFEWVK 148

Query: 65  KFMRLAFGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              +    +    D        + D   V+E      +             +    +I+ 
Sbjct: 149 LDSKEQVFHFDIFDLNELSRNIISDWIPVLESSHFEYEFDIPEIEYFLRIDANAYTRIIN 208

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID 177
           NL                  ++ +      +  NG        P  F ++   +      
Sbjct: 209 NLLQNIITHSSGNKMTLRIFENKEQ-AQIIITDNGKGISSDNLPHIFERLYQCDHSRASK 267

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + +       L + +K  +            + LL K
Sbjct: 268 GNGLGLAIAKELINAHKGNITANSTPGMGTEFTILLPK 305


>gi|224535689|ref|ZP_03676228.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522699|gb|EEF91804.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1113

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 67/233 (28%), Gaps = 23/233 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                +S       +     HDI +P+  I   LE L    + +E  +     ++  +  
Sbjct: 572 RKQKRISEEKTRFFI--NTAHDIRTPLTLIKAPLEELRNKDMVNEEGKGHVSMALRNVDV 629

Query: 64  LKFMRLAFGYTGSVDSLIGLGD-------------IEQVIEDFIAVDKRVQVSWTGEKID 110
           L  +         +++                    +           R+      + ++
Sbjct: 630 LLRLITNLINFERINTYSSHMYIAEYELGTYVSGICDTFHAYANIKHIRLTYESNFQYLN 689

Query: 111 LSRERAK---ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           +  +R K   I+ N+   A    P  G + +S  + ++     +K  G      E+    
Sbjct: 690 VWFDRDKMDSIMKNILSNAMKYTPENGNIYVSASEYEDGWGIEVKDTGIGIPRNEQKGLF 749

Query: 168 VDGNVES-----TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 S      +    I    V  L   +  ++  E   +   ++  +  K
Sbjct: 750 HTYFRGSNAVNLRVSGSGIGLALVHRLVRLHGGKITIESTAEQGTLVRIIFPK 802


>gi|220909136|ref|YP_002484447.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
 gi|219865747|gb|ACL46086.1| response regulator receiver sensor hybrid histidine kinase
           [Cyanothece sp. PCC 7425]
          Length = 587

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 54/231 (23%), Gaps = 36/231 (15%)

Query: 20  SRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGSVD- 78
           + + H++ +P+ AI    +LL    +  E  Q    +          +         +  
Sbjct: 174 AVVSHELRTPLNAILGWSQLLIGGKLSSERTQQAIQTIERNARMQAQLIGDILEMTKLTQ 233

Query: 79  ---------------SLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLF 123
                              +  ++ + E      +                  +I  NL 
Sbjct: 234 GKLHLSLQSLNLNDLLASLVESMQPLAEPKGLRLQSQLDPLPRWVNADPVRLRQIFWNLL 293

Query: 124 MVAHASLPRGGKVTISVQDSKN--------------ENIFSLKINGNLARFPEKFT---- 165
             A    P GG++ + ++                      S+   G              
Sbjct: 294 TNAIKFTPAGGEIWVKLETGGTAALSSLTTDSIPASFVKISITDTGIGISPEFLPHVFDR 353

Query: 166 -QIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLE 214
            +  DG+         +    V  L   ++ R+             +  L 
Sbjct: 354 FRQADGSATRAQGGLGLGLAIVRQLVELHQGRIEVFSQGRGQGTTFTLHLP 404


>gi|223939079|ref|ZP_03630963.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
 gi|223892239|gb|EEF58716.1| multi-sensor hybrid histidine kinase [bacterium Ellin514]
          Length = 769

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 59/240 (24%), Gaps = 29/240 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV----GIEDEVMQLIRLSSM 58
           +        M+ V  L + + HD  + +  I     LL             +Q I  +S 
Sbjct: 386 EEQFRQAQKMESVGQLAAGVAHDFNNILTIIQGHSGLLMSRANLAPAMITSIQAISFASE 445

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR----- 113
            A    + + +           + L  +   +   +       +++              
Sbjct: 446 RATSLTRQLLMFSRKEVIQPKQLDLKSVVDNMSKMLQRLLGETIAFKCTSSPNLPTVLGD 505

Query: 114 --ERAKILLNLFMVAHASLPRGGK---------------VTISVQDSKNENIFSLKINGN 156
                +IL+NL + A  ++ +GG                       +       ++  G 
Sbjct: 506 TGMMEQILMNLAVNARDAMTKGGTLSVSTGPISVSLDYVKVHPDARTGLFVCLQVQDTGC 565

Query: 157 LARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               P    +I +    +        +    V  +  ++   +                 
Sbjct: 566 GMDAP-TMKRIFEPFFTTKEAGKGTGLGLATVYGIVKQHSGWIEVNSHLGKGTTFKIFFP 624


>gi|171909724|ref|ZP_02925194.1| sensory box histidine kinase/response regulator [Verrucomicrobium
           spinosum DSM 4136]
          Length = 835

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 19/241 (7%), Positives = 60/241 (24%), Gaps = 30/241 (12%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
           +A+     L S+   ++  + + H+I +P+  +  + +LL  +  +       +     S
Sbjct: 182 LAEARDAALDSVKTTSVFLASVGHEIRTPMNGVLGAADLLLRDTSLSARQRDGVETIRTS 241

Query: 60  AIIR----------------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS 103
                                           ++   +     ++  +  + +   ++  
Sbjct: 242 GKTLLAIINDILDLSKLQAGEMSFVTESFSPSAIVEDVLTHYADRATKKGLELTSHLEPD 301

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNL 157
              + +   +   ++L NL   A              +      +++      ++  G  
Sbjct: 302 LPAQVMGDRQHFRQVLQNLVSNAVKFTNAGSVSIHVMRRRQMESENRICLRIDVRDTGPG 361

Query: 158 ARFPEKFTQIVDGNVE------STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
              PE   ++     +             +       L       L  E           
Sbjct: 362 I-TPEAQQRLFVPFAQASSKGGWRQGGTGLGLAVSQELVQRMNGTLNVESTPGQGAKFWF 420

Query: 212 L 212
            
Sbjct: 421 T 421


>gi|152984325|ref|YP_001350518.1| two-component sensor PilS [Pseudomonas aeruginosa PA7]
 gi|150959483|gb|ABR81508.1| two-component sensor PilS [Pseudomonas aeruginosa PA7]
          Length = 530

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 61/219 (27%), Gaps = 19/219 (8%)

Query: 12  MDLVAL--LCSRICHDIISPIGAIHNSLELLDE-VGIEDEVMQLIRLSSMSAIIRL---- 64
           M L  L  L + I H+I +P+GAI ++ +LL E   ++    +L ++    +        
Sbjct: 305 MKLAGLGRLTAGIAHEIRNPLGAISHAAQLLQESEELDGADRRLTQIIQDQSRRMNLVIE 364

Query: 65  ---KFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW---TGEKIDLSRERAKI 118
              +  R        +D    L          +  D  + +              +  ++
Sbjct: 365 NVLQLSRRRQAEPQQLDLKDWLQRFVDEYPGKLRNDSELHLQLGAGDIHTRMDPHQLNQV 424

Query: 119 LLNLFMVAHASLPRGGKVTISVQDSKNENIFS-----LKINGNLARFPEKFTQIVDGNVE 173
           L NL         +             +         +  +G      +    + +    
Sbjct: 425 LSNLVQNGLRYSAQAHGRGQVWLSLARDADSDLPVLEIADDGPGVPTDKLNN-LFEPFFT 483

Query: 174 STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
           +      +  Y    L   N+ R+     ++        
Sbjct: 484 TESKGTGLGLYLSRELCESNQARIDYRNREEGGGCFRIT 522


>gi|126697891|ref|YP_001086788.1| two-component sensor histidine kinase [Clostridium difficile 630]
 gi|254973990|ref|ZP_05270462.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-66c26]
 gi|255091377|ref|ZP_05320855.1| two-component sensor histidine kinase [Clostridium difficile CIP
           107932]
 gi|255313037|ref|ZP_05354620.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-76w55]
 gi|255515793|ref|ZP_05383469.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-97b34]
 gi|255648886|ref|ZP_05395788.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-37x79]
 gi|260682101|ref|YP_003213386.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260685699|ref|YP_003216832.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
 gi|306519001|ref|ZP_07405348.1| two-component sensor histidine kinase [Clostridium difficile
           QCD-32g58]
 gi|115249328|emb|CAJ67141.1| Two-component sensor histidine kinase [Clostridium difficile]
 gi|260208264|emb|CBA60669.1| two-component sensor histidine kinase [Clostridium difficile CD196]
 gi|260211715|emb|CBE02023.1| two-component sensor histidine kinase [Clostridium difficile
           R20291]
          Length = 307

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 56/218 (25%), Gaps = 20/218 (9%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ------LIRLSSMSAIIRL 64
            L + + HD+ +P+ ++   LE ++      E   E   +       L            
Sbjct: 89  QLMTSLSHDVKTPLASLVGYLEAVESKIVVGEEKDEYIHVASNKAHYLKNFVENLFEWVK 148

Query: 65  KFMRLAFGYTGSVDSLIG----LGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
              +    +    D        + D   V+E      +             +    +I+ 
Sbjct: 149 LDSKEQVFHFDIFDLNELSRNIISDWIPVLESSHFEYEFDIPEIEYFLRIDANAYTRIIN 208

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF---PEKFTQIVDGNVESTID 177
           NL                  ++ +      +  NG        P  F ++   +      
Sbjct: 209 NLLQNIITHSSGNKMTLRIFENKEQ-AQIIITDNGKGISSDNLPHIFERLYQCDHSRASK 267

Query: 178 SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
            + +       L + +K  +            + LL K
Sbjct: 268 GNGLGLAIAKELINAHKGNITANSTPGMGTEFTILLPK 305


>gi|84388536|ref|ZP_00991083.1| sensor histidine kinase [Vibrio splendidus 12B01]
 gi|84377085|gb|EAP93956.1| sensor histidine kinase [Vibrio splendidus 12B01]
          Length = 817

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 60/244 (24%), Gaps = 34/244 (13%)

Query: 4   NICFNLSSMDLVAL--------LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRL 55
                L +  + A           + + H+I +P+  +  + ++L +  +  E  + ++ 
Sbjct: 323 EKTIYLEAEKVKAQASTNAKTAFLATLSHEIRTPMNGVLGTAQILLKTPLNSEQEKHLKS 382

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT---------- 105
              S    +  +     ++      + L +    ++  I     V  + +          
Sbjct: 383 LYESGDHMMTLLNEILDFSKIEQGRLDLDETRFPLDSIIGSINSVYFTLSSEKGLQFKVY 442

Query: 106 ------GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDS---KNENIFSLKINGN 156
                            +IL NL   A     RG       +            ++  G 
Sbjct: 443 SEVPSGRWYFSDKARLRQILFNLLNNAVKFTSRGFVEVYLKEVIEGSDTYLSIRVRDTGI 502

Query: 157 LARFPEKFTQIVDGN------VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLS 210
                E   +I                   +    V  +A      +     +       
Sbjct: 503 GI-SKEAQKRIFKPFEQAESSTTRRFGGTGLGLAIVKKIAQLMDGSITVTSEEGIGTSFD 561

Query: 211 ALLE 214
             L+
Sbjct: 562 VRLK 565


>gi|71275082|ref|ZP_00651369.1| PAS [Xylella fastidiosa Dixon]
 gi|71163891|gb|EAO13606.1| PAS [Xylella fastidiosa Dixon]
          Length = 558

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         + ++  L     S + H++ +P+  I    ELL    +E     + + +I
Sbjct: 293 LKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRIEEQHPCYKGLSVI 352

Query: 54  RLSSMSAIIRLKFMRLAFGYT------------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+      +  M                           +G  EQV+E          
Sbjct: 353 ASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRA 412

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    +I  NL   A    P  G + + +    +    S+  +G+     
Sbjct: 413 PEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAE 472

Query: 162 EKFT---QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
                  +    +  +T       +    V  L   +   +           + +  L +
Sbjct: 473 FLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSLLR 532


>gi|71901893|ref|ZP_00683952.1| PAS [Xylella fastidiosa Ann-1]
 gi|71728347|gb|EAO30519.1| PAS [Xylella fastidiosa Ann-1]
          Length = 558

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 65/240 (27%), Gaps = 25/240 (10%)

Query: 1   MAKNICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLI 53
           +         + ++  L     S + H++ +P+  I    ELL    +E     + + +I
Sbjct: 293 LKSERAARNEAENMARLKDEFLSTLSHELRTPLTTILGWSELLLQRIEEQHPCYKGLSVI 352

Query: 54  RLSSMSAIIRLKFMRLAFGYT------------GSVDSLIGLGDIEQVIEDFIAVDKRVQ 101
             S+      +  M                           +G  EQV+E          
Sbjct: 353 ASSAKVQKRLISDMLDLSSMLLGKMQLEMEVLDLVEQIREVIGLYEQVVESKGQRLLLRA 412

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                  +  +    +I  NL   A    P  G + + +    +    S+  +G+     
Sbjct: 413 PEMPCLVLGDATRLRQIFENLLSNAIKFTPTDGCIDVEIDADGDSFRVSVTDSGDGIAAE 472

Query: 162 EKFT---QIVDGNVEST--IDSHDIQFYYVILLAHENKIRLLPEIID-DHNVVLSALLEK 215
                  +    +  +T       +    V  L   +   +           + +  L +
Sbjct: 473 FLPHLFSRFRQADGTTTRCHGGLGLGLAIVQSLVEMHGGYVGATSPGLGKGAMFTVSLLR 532


>gi|22127787|ref|NP_671210.1| osmolarity sensor protein [Yersinia pestis KIM 10]
 gi|51598053|ref|YP_072244.1| osmolarity sensor protein [Yersinia pseudotuberculosis IP 32953]
 gi|108809323|ref|YP_653239.1| osmolarity sensor protein [Yersinia pestis Antiqua]
 gi|108814088|ref|YP_649855.1| osmolarity sensor protein [Yersinia pestis Nepal516]
 gi|145597387|ref|YP_001161462.1| osmolarity sensor protein [Yersinia pestis Pestoides F]
 gi|150260819|ref|ZP_01917547.1| osmolarity sensor protein [Yersinia pestis CA88-4125]
 gi|162420105|ref|YP_001608056.1| osmolarity sensor protein [Yersinia pestis Angola]
 gi|165928059|ref|ZP_02223891.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936352|ref|ZP_02224921.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166010415|ref|ZP_02231313.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166213218|ref|ZP_02239253.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167398822|ref|ZP_02304346.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167419042|ref|ZP_02310795.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425631|ref|ZP_02317384.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|170022434|ref|YP_001718939.1| osmolarity sensor protein [Yersinia pseudotuberculosis YPIII]
 gi|186897253|ref|YP_001874365.1| osmolarity sensor protein [Yersinia pseudotuberculosis PB1/+]
 gi|218927348|ref|YP_002345223.1| osmolarity sensor protein [Yersinia pestis CO92]
 gi|229836382|ref|ZP_04456549.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis Pestoides A]
 gi|229839993|ref|ZP_04460152.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229842074|ref|ZP_04462229.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis biovar Orientalis str. India 195]
 gi|229904625|ref|ZP_04519736.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis Nepal516]
 gi|270488162|ref|ZP_06205236.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294502227|ref|YP_003566289.1| osmolarity sensor protein [Yersinia pestis Z176003]
 gi|21960916|gb|AAM87461.1|AE013996_6 protein histidine kinase/phosphatase [Yersinia pestis KIM 10]
 gi|51591335|emb|CAH23001.1| osmolarity sensor protein [Yersinia pseudotuberculosis IP 32953]
 gi|108777736|gb|ABG20255.1| osmolarity sensor protein [Yersinia pestis Nepal516]
 gi|108781236|gb|ABG15294.1| osmolarity sensor protein [Yersinia pestis Antiqua]
 gi|115345959|emb|CAL18823.1| osmolarity sensor protein [Yersinia pestis CO92]
 gi|145209083|gb|ABP38490.1| osmolarity sensor protein [Yersinia pestis Pestoides F]
 gi|149290227|gb|EDM40304.1| osmolarity sensor protein [Yersinia pestis CA88-4125]
 gi|162352920|gb|ABX86868.1| osmolarity sensor protein EnvZ [Yersinia pestis Angola]
 gi|165915966|gb|EDR34574.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165920008|gb|EDR37309.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990505|gb|EDR42806.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166205516|gb|EDR49996.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963036|gb|EDR59057.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051326|gb|EDR62734.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055321|gb|EDR65115.1| osmolarity sensor protein EnvZ [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169748968|gb|ACA66486.1| integral membrane sensor signal transduction histidine kinase
           [Yersinia pseudotuberculosis YPIII]
 gi|186700279|gb|ACC90908.1| integral membrane sensor signal transduction histidine kinase
           [Yersinia pseudotuberculosis PB1/+]
 gi|229678743|gb|EEO74848.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis Nepal516]
 gi|229690384|gb|EEO82438.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis biovar Orientalis str. India 195]
 gi|229696359|gb|EEO86406.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229706450|gb|EEO92457.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis Pestoides A]
 gi|262360306|gb|ACY57027.1| osmolarity sensor protein [Yersinia pestis D106004]
 gi|262364257|gb|ACY60814.1| osmolarity sensor protein [Yersinia pestis D182038]
 gi|270336666|gb|EFA47443.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein [Yersinia pestis KIM D27]
 gi|294352686|gb|ADE63027.1| osmolarity sensor protein [Yersinia pestis Z176003]
 gi|320013273|gb|ADV96844.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 450

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 64/223 (28%), Gaps = 12/223 (5%)

Query: 2   AKNICFNLSSMDL----VALLCSRICHDIISPIGAIHNSLELLDEVGI---EDEVMQLIR 54
            +      + + L      LL + + HD+ +P+  I  + E++ E      E     +  
Sbjct: 217 TRAFNQMAAGVKLLSDDRTLLMAGVSHDLRTPLTRIRLATEMMSEDDAYLSESINKDIEE 276

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            +++               T   D    LG++      +  V +                
Sbjct: 277 CNAIIEQFIDYLRTGQEMPTEPSDLNSVLGEVIAAESGYERVIETDLAEGEVLVDIHPLS 336

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKF---TQIVDGN 171
             + L N+ + A        KV+   +       F ++ +G   +  +        V G+
Sbjct: 337 IKRALTNMVVNAARYGNGWIKVSSGKEL--QRAWFQVEDDGPGIKPEDLKHLLQPFVRGD 394

Query: 172 VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              +     +    V  +   +   L         + + A + 
Sbjct: 395 SARSTSGTGLGLAIVQRIIDAHAGSLEIGTSKRGGLRIRAYIP 437


>gi|303248078|ref|ZP_07334343.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
 gi|302490477|gb|EFL50385.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
           fructosovorans JJ]
          Length = 669

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 17/235 (7%), Positives = 55/235 (23%), Gaps = 30/235 (12%)

Query: 9   LSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVGIEDEV---------MQLIRLSS 57
           + +  +  L  + + I H++  P+ A+    + L  V                  I    
Sbjct: 425 IQASKMKTLGEMSAGIAHELNQPLNAVKMGSDYLRLVAESGHPPPLENLLAVTAQISEQV 484

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGEKID-- 110
             A   +  +R     +  V   + +          +  +       + +          
Sbjct: 485 DRAAAIIGHLRDFGRKSEPVLEDVDIAVPIRGVFAMIGHELSLAGIEIDLDLRPVPPIRA 544

Query: 111 LSRERAKILLNLFMVAHASLPRGGKVTI---------SVQDSKNENIFSLKINGNLARFP 161
            +    ++  NL + A  ++   G                        ++   G      
Sbjct: 545 HANRLEQVFFNLVVNARDAMVGNGCPDRASEVRRLRIRCFREGPRVTVTVADTGCGIPEA 604

Query: 162 EKFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++  +I +    +        +       +  +    +  +       +      
Sbjct: 605 KRH-KIFEPFFTTKQTGQGMGLGLAITYGIVKDYGGDIAVDEAPGGGSLFRLSFP 658


>gi|225180886|ref|ZP_03734334.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225168367|gb|EEG77170.1| integral membrane sensor signal transduction histidine kinase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 497

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 76/233 (32%), Gaps = 25/233 (10%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSA 60
               L +  L   L + + H+  +P+ +I   ++ + E       +++ +++I  +++  
Sbjct: 256 EQKRLQA--LRQNLVASVSHEFRAPLTSIQGFVDAMLEGFIREEEQEKYLRVILNNTLHL 313

Query: 61  IIRLKFMRL-------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE-----K 108
              +  +                      L +         A +K +++ +  E      
Sbjct: 314 NRLVNDLVDLASIESGYVQLRYEDVDPYTLAEKALDSVYPQAQEKSIKLEYNYEEGLPAI 373

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNE--NIFSLKINGNLARFPEK--- 163
                   +IL+NL   A    P  G++ +  Q S ++   IF++K NG      E    
Sbjct: 374 RGDGDRLYQILINLLENAITYTPDEGRIALEAQLSDDKEKVIFTVKDNGQGIPLAEIPYI 433

Query: 164 FTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           + +    +           +    V  L H +   +  +         S ++ 
Sbjct: 434 WERFYKVDKARNRANKGKGLGLAIVRELVHMHNGEVAVKSTPGEGSAFSVIIP 486


>gi|242281150|ref|YP_002993279.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
 gi|242124044|gb|ACS81740.1| PAS/PAC sensor signal transduction histidine kinase [Desulfovibrio
           salexigens DSM 2638]
          Length = 596

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/222 (9%), Positives = 56/222 (25%), Gaps = 25/222 (11%)

Query: 18  LCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLI---------RLSSMSAIIRLKFMR 68
             + + H++ +P+ ++    E L       E +Q                     L   R
Sbjct: 369 FVANVSHELRTPLTSVKGYAETLLSDPPPPESIQKNFLATIEKNANHMCKIVDDLLNLSR 428

Query: 69  LAFGYTGSVDSLIGLGDIEQVIEDFI-----AVDKRVQVSWTGEKIDLSRERAKILLNLF 123
           L  G+       I   D  +   +            ++ S+      +  +  +++    
Sbjct: 429 LESGHEKVELMPIDPTDALREAWEACSGLAKKRKVDLKRSFEKGDFTVMADSGQLMQLFR 488

Query: 124 M---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIV--DGNVEST 175
                     P    V +  +  +    F++  +G      +    F +    +    + 
Sbjct: 489 NLLENGIKYGPEENPVIVEHRVREGRLQFAVIDSGPGIPAADQPRIFERFYSVEKFRRNE 548

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDH---NVVLSALLE 214
             S  +       +   +   +  +   +           L 
Sbjct: 549 FGSTGLGLAISRHIVSNHGGEISVQCPPEGHRQGTAFVFSLP 590


>gi|219852123|ref|YP_002466555.1| PAS/PAC sensor hybrid histidine kinase [Methanosphaerula palustris
           E1-9c]
 gi|219546382|gb|ACL16832.1| PAS/PAC sensor hybrid histidine kinase [Methanosphaerula palustris
           E1-9c]
          Length = 769

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 73/235 (31%), Gaps = 23/235 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSL----ELLDEVGIEDEVMQLIRLS 56
           M +++  N   ++ + +L   I HD  + + AI  ++      L       E +    ++
Sbjct: 391 MEEDLAKN-ERLESIGVLAGGIAHDFNNALTAIEGNIVVAKAHLKPEEKAYERLSEAEMA 449

Query: 57  SMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT-----GEKIDL 111
           +  A    + +         +   + L D+      F      V+  ++           
Sbjct: 450 AHRARDLTRQLLTFSRGGKPIKRQLRLNDLLIDAVSFALSGSAVRKKFSIAEDLWPVEAD 509

Query: 112 SRERAKILLNLFMVAHASLPRGGKVTISVQDS------------KNENIFSLKINGNLAR 159
             +  +++ NL + A  ++P GG + +   +              N    ++K +G    
Sbjct: 510 EGQIRQVINNLVINADQAMPDGGILDVIGDNVSLASDQVLSLKAGNYVRIAVKDHGIGIP 569

Query: 160 FPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +I +    +      +       +   +   L+ + +       +  + 
Sbjct: 570 KEFLS-KIYEPYFTTKQKGSGLGLTVAYSILRNHGGSLIVDSVTGGGSTFTLYIP 623


>gi|162455110|ref|YP_001617476.1| protein kinase [Sorangium cellulosum 'So ce 56']
 gi|161165692|emb|CAN96997.1| Protein kinase [Sorangium cellulosum 'So ce 56']
          Length = 2073

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 55/239 (23%), Gaps = 30/239 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGI------------EDEV 49
            AK      +     +   + + H++ +P+  I    + L                 +   
Sbjct: 1594 AKEAADRANRAK--SDFLASMSHELRTPLNGILGYAQFLMRAPELSPKSREGVQIVKKSG 1651

Query: 50   MQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK- 108
              L+ L +    +               D    + ++  +                    
Sbjct: 1652 EHLLALLNDLLDLAKIEAGKMELVPRRFDFPSFVHNVVDLCGVRAEQRGIAFTYEVRGPA 1711

Query: 109  ----IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSK-----NENIFSLKINGNLAR 159
                    +   ++LLNL   A     RG    +            +  F ++  G    
Sbjct: 1712 LAAVHADEKRLTQVLLNLLGNAIKFTERGAVTLLVDALDDGGGGPRDVRFRIEDTGTGI- 1770

Query: 160  FPEKFTQIVDGN-----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
             PE   +I +            +   +       +  +    +  E         +  L
Sbjct: 1771 APEHLARIFEPFEQVGDQRVKSEGTGLGLAISKRIVEQLGGTIHVESELGKGSAFTVTL 1829


>gi|146280700|ref|YP_001170853.1| two-component system sensor protein [Pseudomonas stutzeri A1501]
 gi|145568905|gb|ABP78011.1| two-component system sensor protein [Pseudomonas stutzeri A1501]
 gi|327478968|gb|AEA82278.1| two-component system sensor protein [Pseudomonas stutzeri DSM 4166]
          Length = 289

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 69/237 (29%), Gaps = 26/237 (10%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-------GIEDEVMQLIR 54
            +       + +L +   S + H+  +P+G+I +   LL +            +V  +  
Sbjct: 44  TQAEQLR-QASELKSRFLSYMSHEFRTPLGSILSITRLLSDELDGPLSPEQHKQVRFVSS 102

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV-----------QVS 103
            +S  + +    + LA    G V       D+  +      + + +           +  
Sbjct: 103 AASELSEMVDDLLDLAKIEAGRVSISPAWFDMLDLFSALRGMFRPIVEGSPVDLIFEEPQ 162

Query: 104 WTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK 163
                    ++ A+IL N    A     +G     +  ++  +  F++   G     P+ 
Sbjct: 163 GLPRFYTDDKKLAQILRNFISNALKFTTQGEVRVSARMETPQQVRFAVTDTGIGI-APQL 221

Query: 164 FTQIVDGNVESTID------SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             ++ +   +             +        A     R+  +           ++ 
Sbjct: 222 HDRLFEDFAQVDSPLQKRLRGTGLGLALCKRFAELLGGRVGLQSEPGKGSEFYVIIP 278


>gi|77456568|ref|YP_346073.1| Signal transduction histidine kinase, nitrogen specific, NtrB
           [Pseudomonas fluorescens Pf0-1]
 gi|77380571|gb|ABA72084.1| signal transduction histidine kinase, nitrogen specific, NtrB
           [Pseudomonas fluorescens Pf0-1]
          Length = 361

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 65/234 (27%), Gaps = 25/234 (10%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIR 63
                LS  +   +L   + H+I +P+G I  + +LL     ED +     +    A   
Sbjct: 122 KEEAQLSKQETSKMLVRGLAHEIKNPLGGIRGAAQLLARELPEDSLRDYTNVIIEEADRL 181

Query: 64  LKFMRLA-----FGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKI 118
              +               +    L  + Q++E        +   +     D+  +R ++
Sbjct: 182 RNLVDRMLGSNKLPSLALCNVHEVLERVCQLVEAESQGCITLVRDYDPSIPDVLIDREQM 241

Query: 119 LLNLFMVAHASLP------------------RGGKVTISVQDSKNENIFSLKINGNLARF 160
           +  +  +   ++                      + TI     +      +  NG     
Sbjct: 242 IQAVLNIVRNAMQAISSQNELRLGRISLRTRAMRQFTIGHVRHRLVTKIEIIDNGPGI-P 300

Query: 161 PEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    I    V    D   +       +  +++  +  +    H    S  L 
Sbjct: 301 AELQETIFFPMVSGRPDGTGLGLAITQNIISQHQGLIECDSHPGH-TTFSIFLP 353


>gi|70733783|ref|YP_257423.1| osmolarity sensor protein EnvZ [Pseudomonas fluorescens Pf-5]
 gi|68348082|gb|AAY95688.1| osmolarity sensor protein EnvZ, putative [Pseudomonas fluorescens
           Pf-5]
          Length = 437

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 9/217 (4%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV-GIEDEVMQLIRLSSMS 59
           MA+++       +L   + + + HD+ +P+  +  SLEL+ +   + D++++ I      
Sbjct: 211 MAEDVEQAGREREL---MLAGVSHDLRTPLTRLRLSLELMGDHTDLTDDMVRDIEDMDAI 267

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKIL 119
               L F+R     +     L  L        +       +++              ++L
Sbjct: 268 LDQFLAFIRDGRDESVEEVDLGDLVQEVAAPYNQNEERVHLRLEPIQPFPLRRVSMKRLL 327

Query: 120 LNLFMVAHAS--LPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVES 174
            NL   A             +S   +    + S+   G      E    F     G+   
Sbjct: 328 NNLIGNALNHAGTEVEVAAYVSGDTNAPYVVLSVMDRGAGIDPSELEAIFNPFTRGDRAR 387

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                 +    V  +A  +   +      D  +    
Sbjct: 388 GGKGTGLGLAIVKRIAAMHGGNVELRNRPDGGLEARV 424


>gi|50552025|ref|XP_503487.1| YALI0E03168p [Yarrowia lipolytica]
 gi|49649356|emb|CAG79066.1| YALI0E03168p [Yarrowia lipolytica]
          Length = 1147

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/244 (9%), Positives = 61/244 (25%), Gaps = 33/244 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           +       + +L     +   + + H+I +P+  I    +L  +  +     +++ +   
Sbjct: 494 QRNTAAREAAELANRAKSEFLANMSHEIRTPMNGIIGMTQLTLDTELTQYQREMLSIVHN 553

Query: 59  SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQV 102
            A   L  +      +    + + +  I   +   +                    +V  
Sbjct: 554 LANSLLTIIDDILDISKIEANRMTIEKIAFSLRGTVFGALKTLSVKANEKPLDLVYKVDN 613

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLP--------RGGKVTISVQDSKNENIFSLKIN 154
           ++    +  S    +++LNL   A             R           +    F +   
Sbjct: 614 TFPDNLVGDSFRLRQVILNLVGNAIKFTESGEVALSVRKADDQRPGSPDEMMIEFCVSDT 673

Query: 155 GNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G   +  +           DG+         +       L +     +  +         
Sbjct: 674 GIGIQSDKLDVIFDTFCQADGSTTRKFGGTGLGLSISKRLINLMGGDIWVKSEYGKGSQF 733

Query: 210 SALL 213
              L
Sbjct: 734 FFTL 737


>gi|322713760|gb|EFZ05331.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. A50]
          Length = 894

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|320334818|ref|YP_004171529.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
 gi|319756107|gb|ADV67864.1| multi-sensor signal transduction histidine kinase [Deinococcus
           maricopensis DSM 21211]
          Length = 557

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 67/236 (28%), Gaps = 27/236 (11%)

Query: 3   KNICFNLS--SMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           ++    L   + +L A     I HD+ +P+  I +  +LL               + +I+
Sbjct: 308 ESRTAQLEDVNRELEAF-AYSISHDLRTPLRHIASFADLLSRDTQGLLPEKATRRLTIIQ 366

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDK-------RVQVSWTGE 107
            S+      +  +               +     V E    V++          V     
Sbjct: 367 ESAKRMDGLINDLLEFARTGRQDLVFREVPLGSVVQEVMQDVERANEGRVIEWDVQDLPT 426

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTI--SVQDSKNENIFSLKINGNLARFPEKF- 164
                    ++L+NL   A         + +    +    E++  ++ NG          
Sbjct: 427 VYGDPAALRQVLMNLVANAVKYARDRTPIRVALWGETGAREDVVHVRDNGVGFNMAYAHK 486

Query: 165 -----TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                 ++   +   + +   +    V  +   +  R+  E  +      S  L +
Sbjct: 487 LFGVFQRLHSPD---SFEGTGVGLANVKRIVARHGGRVWAEGTEGQGATFSFSLPR 539


>gi|319442832|ref|ZP_07991988.1| two-component system sensor kinase MtrB [Corynebacterium variabile
           DSM 44702]
          Length = 745

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 71/239 (29%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVM-----Q 51
           +A+N+   +  ++    L     S + H++ +P+  +  + +L+ +   + + M     +
Sbjct: 377 LAENLSHQIRQLEDFGSLQQQFTSDVSHELRTPLTTVRMAADLIHDNAEDLDPMTRRASE 436

Query: 52  LIRLSSMSAIIRLKFMRLAFGY--------TGSVDSLIGLGDIE-QVIEDFIAVDKRVQV 102
           L+        + L  +     +           +D    +     QV      V   + +
Sbjct: 437 LMLSELDRFEMLLGDLLEISRHDAGVANLSLEMIDVRGVVKSTLEQVRAIAEEVGCPIIL 496

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRG--GKVTISVQDSKNENIFSLKINGNLARF 160
               E + +  +  ++   L  +   ++       V ++++        ++  +G     
Sbjct: 497 DLPDEPVSVQVDSRRVERVLRNLLANAIDHSEGRPVDVTMRTGDGSLAVTVVDHGVGLTP 556

Query: 161 PE---KFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            E    F +      + E       +        A  +  RL               L 
Sbjct: 557 GEADLVFNRFWRADPSRERRTGGTGLGLAIAKEDALLHGGRLEATGEPGVGACFRLTLP 615


>gi|317055320|ref|YP_004103787.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
 gi|315447589|gb|ADU21153.1| integral membrane sensor signal transduction histidine kinase
           [Ruminococcus albus 7]
          Length = 475

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/233 (10%), Positives = 62/233 (26%), Gaps = 22/233 (9%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE--VGIEDEVMQLIRLSSMS 59
           AKN    +S  DL   L + I HD+ +P+  +    E++ +       +  + +++    
Sbjct: 244 AKNEIRKVS--DLRKDLIANISHDLRTPLTMVKAYAEMIRDLSGDNPVKRAEHVQVIIDE 301

Query: 60  AIIRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWT 105
           A                    M L       VD +       Q++ +    D + +    
Sbjct: 302 ADRLSNLVNNLLELSKLESGNMELNRRKFSIVDKINDYMTRYQLVIEQNGYDMKYEPDED 361

Query: 106 GEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
            +      +  +++ N    A         + I   +++      +  NG          
Sbjct: 362 RQVDADPDKLDQVIYNFINNAINYTGDNKVIRIKQINTEKSVRIEVSDNGKGIAKELLPK 421

Query: 166 QIVDGNVESTID----SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                  ++ I        +       +   +         +         + 
Sbjct: 422 VFDRYYRDAKIKRDVVGTGLGLAICKEILKCHDFPFGVRSEEGKGSTFWFEIP 474


>gi|298245656|ref|ZP_06969462.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
 gi|297553137|gb|EFH87002.1| PAS/PAC sensor signal transduction histidine kinase [Ktedonobacter
           racemifer DSM 44963]
          Length = 737

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 60/230 (26%), Gaps = 19/230 (8%)

Query: 3   KNICFNLS-SMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           +     L  +  + + L S + H+  + +  I    E+L    +    ++          
Sbjct: 503 QKSNVRLELTNRMKSNLVSIVSHEFRTSLTDIQGFSEILQRNELNLSEVREYATDIREDA 562

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQV-----------IEDFIAVDKRVQVSWTGEKID 110
            RL  +         ++       +  +                      ++        
Sbjct: 563 QRLVSLINDMLDLDRLEMDHIQLHLNWLDLNALINEAVARMRRRTQKHTFRLQLARALPI 622

Query: 111 LSRERAKILLNLFM---VAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
           L  +R K+++ L      A    P GG +T+  +        S+   G      E     
Sbjct: 623 LWGDREKLMIVLINLLDNAIKYSPDGGAITVVSELEDLCVHISVSDQGVGIPPEELEHVF 682

Query: 168 VD----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                      T++   +    V  +   +  ++  E       +    L
Sbjct: 683 ERYKRLPFGPETVEGRGLGLSIVREIILLHGGKVWVESAQGRGSIFHYTL 732


>gi|296331265|ref|ZP_06873737.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305676252|ref|YP_003867924.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296151380|gb|EFG92257.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305414496|gb|ADM39615.1| two-component sensor histidine kinase [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 1026

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 56/231 (24%), Gaps = 22/231 (9%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELL---DEVGIEDEVMQLIRLSSMSA 60
               N+  +       ++  H+  +P+ +I N  + L         +E    ++L     
Sbjct: 420 RKLLNIDRLK--DEFIAKTSHEFKTPLNSIINICQTLLAGRRKRTIEEEKDNMQLVIRMG 477

Query: 61  IIRLKFMR-----------LAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
                 +            +   +   VD    +                  ++     +
Sbjct: 478 YRLSNLVNDILDLEKIKQGMLQIHPVPVDIYTLISSEMNFYHLLSRHKNLNIMNHIPSGL 537

Query: 110 D----LSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
                      +I+ NL   A      G     + + + N    ++   G+     ++ T
Sbjct: 538 PLVLADENRFRQIVTNLVDNAIKYTAEGQITLSASKLNDNMIKVTVTDTGSGISEADRQT 597

Query: 166 QI--VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                     +  D   +    V  L       +  E  +         L 
Sbjct: 598 IFESFQQAETNKDDGAGLGLSIVKQLVELQNGEIWVESEEGKGSAFHFTLP 648


>gi|284167539|ref|YP_003405817.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
 gi|284017194|gb|ADB63144.1| multi-sensor signal transduction histidine kinase [Haloterrigena
           turkmenica DSM 5511]
          Length = 683

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/230 (10%), Positives = 58/230 (25%), Gaps = 18/230 (7%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIRL 55
             N     S+ +L         HD+  P+  + + L+LL++           E ++    
Sbjct: 447 QTNAQLKRSNRELK-RFAHAASHDLQEPLRMVSSYLQLLEQRYGDDLDADATEFIEFAVD 505

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGD-------IEQVIEDFIAVDKRVQVSWTGEK 108
            +      +  +      +   +    +          E +       +  +        
Sbjct: 506 GADRMRAMVDALLEYSQVSTRENDFETVDCEAVLEQATENLQMAIEEREASITSDELPTV 565

Query: 109 IDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN-ENIFSLKINGNLARFPE---KF 164
               R+  ++  NL   A               +  + E +FS++ NG      E    F
Sbjct: 566 SGDERQLIQLFQNLLDNAITYAGDAPPTVHVSAERGDGEWLFSVRDNGIGIDPEETDDIF 625

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +         I       +   +  R+  E            + 
Sbjct: 626 AVFNRLHAPDEYGGTGIGLAICKRIVTIHDGRIWVESEPGEGTTFFFTIP 675


>gi|266619281|ref|ZP_06112216.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
 gi|288869198|gb|EFD01497.1| sensor histidine kinase [Clostridium hathewayi DSM 13479]
          Length = 385

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 19/232 (8%), Positives = 60/232 (25%), Gaps = 21/232 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRL 55
           M   +  +           +   H++ +P+  I  +LE+L+          ++V+ +++ 
Sbjct: 152 MMDKVSASFERQK---RFSASAAHELKTPLATILVNLEVLELDGKTSPARMEKVLSIVKA 208

Query: 56  SSMSAIIRLKFM--------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
           ++   I  ++ +                  +      D    +     +   ++ +    
Sbjct: 209 NTERMIRLVENLMRLTSEEAHEMDEEVPLSEVFAMTLDELSPMIQKKNLTVTIKNTPDIS 268

Query: 108 KIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167
                    +++ NL   A       G VT+      +     +   G      E     
Sbjct: 269 LTGSRIMLYRVMSNLLENAAKYNREHGSVTVVTGRDGDAVAVEITDTGIGIPEEELSHIF 328

Query: 168 VDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                        +    +    V  +  ++   +  + +            
Sbjct: 329 EPFYRVDQSRSRAVGGAGLGLSLVKDIVEKHGGEITVKSVIGEGTTFMLRFP 380


>gi|251773086|gb|EES53640.1| putative multi-sensor signal transduction histidine kinase
           [Leptospirillum ferrodiazotrophum]
          Length = 307

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 67/218 (30%), Gaps = 21/218 (9%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
             + + H+I +P+ +I    E L      +  +    + +I  S+      +  +     
Sbjct: 81  FVANVSHEIRTPLTSIRGYAEALSDGALADPELAKSFLGIISTSADRLSRLVNDLLELSR 140

Query: 73  -YTGSVDSLIGLGDI--------EQVIEDFIAVDKRVQVSWTGEKIDLSRE--RAKILLN 121
             +G+VD  +   ++        E+  +     + R++  ++     +S +     +L+N
Sbjct: 141 LESGTVDLRLSPIEMGALADRLREEFFDRLSQKEMRLEADFSRPFTFISDDSLLHLVLVN 200

Query: 122 LFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVEST--I 176
           L   A      G  V +            ++  G      E    F +    +   +  +
Sbjct: 201 LLDNAIKYSSPGSSVRLGAAMDDEGIQIDVEDRGMGIPEEELPRIFERFYRVDRSRSPAV 260

Query: 177 DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
               +    V  +      R+           +S  L 
Sbjct: 261 PGTGLGLSIVRHVMTLLSGRVTVRSALGKGTTVSLHLP 298


>gi|255281668|ref|ZP_05346223.1| putative sensor protein SrrB [Bryantella formatexigens DSM 14469]
 gi|255267735|gb|EET60940.1| putative sensor protein SrrB [Bryantella formatexigens DSM 14469]
          Length = 469

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 20/223 (8%), Positives = 65/223 (29%), Gaps = 19/223 (8%)

Query: 5   ICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE----VGIEDEVMQLIRLSSMSA 60
              + ++     LL + + H++ +P+ AI    ELL +         + +  I       
Sbjct: 246 RALSEANEKQRQLLGA-LSHELKTPMTAIQGYAELLQKVELPSARRMDALAYIEEECKRL 304

Query: 61  IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKR------VQVSWTGEKIDLSRE 114
                 M      +G       +  + ++      + +       + +    +   +  +
Sbjct: 305 SRLAVKMLQIVELSGEEKIEKHVIRLPELFRRAETLTRCSLQKKRIHLDMQIQVTGMEGD 364

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNV-- 172
              +LL+       +  +  +    ++ + +++   +K  G      E   +I +     
Sbjct: 365 GD-LLLSFLTNLIDNAAKASREGAVIRLTASQDGIFVKDEGCGILPEEL-DRIAEPFYMV 422

Query: 173 ----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211
                       +       +A  +  +L+ +        +  
Sbjct: 423 DKSRSRKEGGAGLGLALCSQIARLHGGKLVIKSTPGEGSTIGL 465


>gi|213971910|ref|ZP_03400010.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
 gi|301384480|ref|ZP_07232898.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato Max13]
 gi|302060514|ref|ZP_07252055.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato K40]
 gi|302132002|ref|ZP_07257992.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213923335|gb|EEB56930.1| sensor histidine kinase/response regulator GacS [Pseudomonas
           syringae pv. tomato T1]
          Length = 917

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 59/242 (24%), Gaps = 29/242 (11%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +A+      S +   +   + + H+I +P+  I     LL +  +       +     SA
Sbjct: 273 LARKEALEASRIK--SEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQFDYLATIEKSA 330

Query: 61  IIRLKFMRLAFGYT-----------GSVDSLIGLGDIEQVIEDFIAVDKR-----VQVSW 104
              L  +     ++              +    L D   ++              V    
Sbjct: 331 DNLLSIINEILDFSKIEAGKLVLDNIPFNLRDLLQDTLTILAPAAHAKHLELVSLVYRDT 390

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
                       +IL NL   A      G  V  ++ + +     +   S++  G     
Sbjct: 391 PLALSGDPLRLRQILTNLVSNAIKFTREGTIVARAMLEDETEEHAQLRISVQDTGIGLSS 450

Query: 161 PEKFTQIVDGNV-----ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL--SALL 213
            +        +              +       L  +    +  +           S  L
Sbjct: 451 QDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLKL 510

Query: 214 EK 215
            K
Sbjct: 511 PK 512


>gi|172057252|ref|YP_001813712.1| histidine kinase [Exiguobacterium sibiricum 255-15]
 gi|171989773|gb|ACB60695.1| histidine kinase [Exiguobacterium sibiricum 255-15]
          Length = 777

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/214 (10%), Positives = 59/214 (27%), Gaps = 19/214 (8%)

Query: 20  SRICHDIISPIGAIHNSLELL----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           S I H++ +P+ +I    EL+         + + ++ +   +      +         + 
Sbjct: 554 SMISHELRTPLASIEGFSELMIHRSLSNDKQLKYLKTVHSEAQRLGKLVTAFLDYQRLSR 613

Query: 76  SVDSL-------IGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---AKILLNLFMV 125
             +           L        +      +V+   T     +  +R    ++L NL   
Sbjct: 614 QKEVYLFESFDISALVQEVADWMNISIPSHQVKFDTTHMTCLIEADREKIRQLLTNLLGN 673

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTID-----SHD 180
           A    P   +V + +  S+ E + ++  NG      +              +        
Sbjct: 674 AIKYSPSDPQVDVLLDCSEKEVVLTISDNGLGIPQEDLPHLFDSFYRVERQEHKQIKGTG 733

Query: 181 IQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +       +   ++ ++               L 
Sbjct: 734 LGLLICKEIVEAHQGQISVSSELGIGTDFLVRLP 767


>gi|170698659|ref|ZP_02889726.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
 gi|170136438|gb|EDT04699.1| multi-sensor hybrid histidine kinase [Burkholderia ambifaria
           IOP40-10]
          Length = 663

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/238 (10%), Positives = 67/238 (28%), Gaps = 24/238 (10%)

Query: 1   MAKNICFNLSSMD---LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSS 57
           +       + + +   +   L + + H++ +P+  I+  +E+L     +    Q I    
Sbjct: 269 LRGARDARVQADESNRMKDELLATVSHELRTPLNVIYGWVEVLRSGEGQGFAHQAIDAID 328

Query: 58  MSAIIRLKFM-----------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----KRVQV 102
            SA    + +                    VD +  + +  + + +    +         
Sbjct: 329 RSARSLSRMVGDLLDASSLATGRMRLERTPVDLVRIVQEAVRELGETAEANGLELSTECA 388

Query: 103 SWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE 162
             +      +    ++L NL   A    P GG++ +S+  +      S+   G       
Sbjct: 389 MPSCVIAADADRLRQLLANLLSNAVKFTPPGGRIKVSLNPAGARVRLSVADTGQGISAER 448

Query: 163 KFTQIVDGNVESTID-----SHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLE 214
                   +              +    V  +A  +   +            ++ +L 
Sbjct: 449 LPHLFDTFSRPEGAPALPKRGLGLGLSIVRNIARLHGGEVAAASEGAGRGTTVTVMLP 506


>gi|168701638|ref|ZP_02733915.1| multi-sensor hybrid histidine kinase [Gemmata obscuriglobus UQM
           2246]
          Length = 863

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 20/224 (8%)

Query: 10  SSMDLVAL--LCSRICHDIISPIGAIHNSLELLDE--------VGIEDEVMQLIRLSSMS 59
            S  L AL  L   I HD  + +  I  S +L+ +          +   V+Q     +  
Sbjct: 482 ESRRLEALGRLVGGIAHDFNNLLTVILGSGQLVRDLVPAASPADELLRTVIQAGERGADL 541

Query: 60  AIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER---A 116
               L F R        +D    L +IE+++   +    RV   +  +   +  +R    
Sbjct: 542 TGQLLTFSRRNPIALEPMDLNEVLQEIEKLVRPAVGDGVRVVTDYAPDLPPVRADRGVLT 601

Query: 117 KILLNLFMVAHASLPRGGKVTISVQDSK----NENIFSLKINGNLARFPEKFTQIVDGNV 172
           +++LNL   A  ++   G++ +  +             +  NG          ++ +   
Sbjct: 602 QLVLNLATNARDAMDGAGELGLRTRCVAVAGRPVARLVVSDNGCGM-DDATKARVFEPFF 660

Query: 173 ESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            +        +    V  + +     +  E         S  L 
Sbjct: 661 TTKPVGKGTGLGLATVYGIVNGLGGTIALESAVGQGTTFSIDLP 704


>gi|161615073|ref|YP_001589038.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Paratyphi B str. SPB7]
 gi|161364437|gb|ABX68205.1| hypothetical protein SPAB_02833 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 894

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|153875667|ref|ZP_02003366.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
 gi|152067869|gb|EDN66634.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
          Length = 365

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/231 (9%), Positives = 60/231 (25%), Gaps = 20/231 (8%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            + I     + +L A     + HD+ +P+  I+    LL E   E     +++  +    
Sbjct: 135 QQKIELEQHNNELEAF-AHTVAHDLKNPLNTIYGMTGLLIEDIEELSKPNILKHLNTIEY 193

Query: 62  I-----------RLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKID 110
                        L              ++  +               + ++        
Sbjct: 194 ASLKMSKIIDALLLLASARTQEVEMEAVNMADVITQVYQRLAHTIEQYQGEIILPKTWPP 253

Query: 111 ---LSRERAKILLNLFMVAHASLPRGGKVT-ISVQDSKNENIFSLKINGNLARFPEKFTQ 166
               +    ++  N          +  ++   +   + N   F +  NG      E   +
Sbjct: 254 ALGYAPWIEEVWANYLSNGLKYGGKPPRLELGATPINGNYIRFWVHDNGQGM-TEEDQNR 312

Query: 167 IVDGNV---ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +        ++ I+ H +    V  +  +   ++  E            L 
Sbjct: 313 LFVPFTRITQARIEGHGLGLSIVQRIVEKCGGQVGVESKLGQGSRFHFSLP 363


>gi|94501750|ref|ZP_01308264.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Oceanobacter sp. RED65]
 gi|94426150|gb|EAT11144.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Oceanobacter sp. RED65]
          Length = 514

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 75/228 (32%), Gaps = 18/228 (7%)

Query: 2   AKNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEVG----IEDEVMQLIRL 55
              +        L ++  + + I H+I +P+ A+ ++ +LL E       + E+  +I  
Sbjct: 283 KDTVTRRAHQFKLSSMGRMAASIAHEIRNPLNAVSHAAQLLQESPDLQQDDTELCNIILK 342

Query: 56  SSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRER 115
            S      ++ +        +    I L +  +  +       +V +   G  +D+  + 
Sbjct: 343 QSSRMEQIIQNVLQISRRKTTSLQWIKLDNWLENFKTEFEQQHKVPLDIDGGDLDIRFDP 402

Query: 116 ---AKILLNLFMVAHASLPRGGKVTISVQDSKN--ENIFSLKINGNLARFPEKFTQIVDG 170
               ++L NL   + A         I ++  ++   +   +  NG      E    + + 
Sbjct: 403 SQLHQVLWNLCHNSVAYGHAAANAPILLKIDEHSGHSRLRIMDNGPGISPKE-QEFLFEP 461

Query: 171 NVESTIDSHDIQFYYVILLAHENKIRLLPEII------DDHNVVLSAL 212
              ++     +  Y V  L   N+ ++            D       L
Sbjct: 462 FHTTSAQGTGLGLYIVKELCEANQAKIHYRNRHAKKDGADKGACFEIL 509


>gi|62179293|ref|YP_215710.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|62126926|gb|AAX64629.1| sensory kinase in two-component regulatory system wtih KdpE,
           regulates kdp operon (high-affinity potassium transport
           system) [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 894

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|115522160|ref|YP_779071.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
 gi|115516107|gb|ABJ04091.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
           BisA53]
          Length = 1060

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 67/242 (27%), Gaps = 29/242 (11%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD----EVGIEDEVMQLIRLSS 57
           A+        M+ +  L   I HD  + +  I  ++++L     +      + +LI  ++
Sbjct: 663 AEQQLRQAQKMESIGQLTGGIAHDFNNMLTVITGTIDILAASVADRPECAAITRLISEAA 722

Query: 58  MSAIIRLKFM----RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSR 113
                  + +    R         D  + L +++ ++   +     ++ S       +  
Sbjct: 723 DRGAELTRHLLAFARKQPLEPCETDPNVVLSELQILLRPTLGEHIEIRESLQDGVWPIFV 782

Query: 114 ERAKILLNLFM---VAHASLP---------------RGGKVTISVQDSKNENIFSLKING 155
           +R ++   L      A  ++P               +         +     + ++   G
Sbjct: 783 DRGQLEAALVNLAVNARDAMPEGGTLTLETRNTMIDQDFVRRYGEGEPGQYVMITVTDTG 842

Query: 156 NLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                     ++ D    +        +    V     ++   +       H       L
Sbjct: 843 CGI-AEAIRVRVFDPFFTTKEVGKGTGLGLSMVYGFIKQSGGHITLYSEVGHGTAFRIYL 901

Query: 214 EK 215
            +
Sbjct: 902 PR 903


>gi|118581313|ref|YP_902563.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
 gi|118504023|gb|ABL00506.1| multi-sensor hybrid histidine kinase [Pelobacter propionicus DSM
           2379]
          Length = 860

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 73/242 (30%), Gaps = 31/242 (12%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSSM--- 58
           +    ++  ++ + +L   I HD  + + A+  + +L L  +         I+  +    
Sbjct: 468 EAQMLHVQKLESLGVLAGGIAHDFNNILTAVLGNADLALALLPPSSPARDNIQRINQAAS 527

Query: 59  ----SAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
                A   L +       T  ++    + ++ Q+++  I+   R+  +++    D+S +
Sbjct: 528 KAAELARQMLAYSGKGHFITERLNLNALVNEMLQMLDVSISKKARLCFNFSDSLPDISAD 587

Query: 115 RAKILLNLFMVAHASLPRGGKVTISVQDS----------------------KNENIFSLK 152
             ++   +  +   +    G+    +  +                             + 
Sbjct: 588 ATQLRQVIMNLIINASEAIGEQCGQITFTTGVMECDRAYLSKIWITEQLAEGKYVFMEIC 647

Query: 153 INGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
             G     PE   +I +    +      +     + +   ++  +  E           L
Sbjct: 648 DTGCGM-DPETAAKIFEPFFSTKFTGRGLGMAVTLGIVRGHRGAITVESEKGRGTTFRIL 706

Query: 213 LE 214
           L 
Sbjct: 707 LP 708


>gi|95930432|ref|ZP_01313168.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133472|gb|EAT15135.1| multi-sensor signal transduction histidine kinase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 679

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 58/234 (24%), Gaps = 26/234 (11%)

Query: 4   NICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIE---------------DE 48
                L  M       S   H++ +P+ A+    ELL                      E
Sbjct: 439 TRERELDRMK--NEFISTAAHELRTPLTAVMGYTELLLHPEEFNVIEPKEQNRVLTTIYE 496

Query: 49  VMQLIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK 108
               +       +   +               I       V       D  V +    E+
Sbjct: 497 KACRLEGIVADLLDLSRVHSGCLIALSRASCDINSLLCRAVGGYQYRQDFTVALELDSEE 556

Query: 109 IDLSRERA---KILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFT 165
           + L  +     +++ NL   A        +V +      +  +  ++ +G      +   
Sbjct: 557 VVLWADEKKLEQVMDNLLSNAVKFSSESCQVFVRGHRDDDVYVIEVEDHGIGMTPKQV-E 615

Query: 166 QIVDGNVE-----STIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           ++ D         +      +    V  +   +   +  + +      ++  L 
Sbjct: 616 RVFDKFYRVDSSDTAPGGLGLGMSIVKNIVEAHSGTIEVQSVPGQGTCITVRLP 669


>gi|312968286|ref|ZP_07782496.1| osmolarity sensor protein envZ [Escherichia coli 2362-75]
 gi|312287111|gb|EFR15021.1| osmolarity sensor protein envZ [Escherichia coli 2362-75]
 gi|323189007|gb|EFZ74291.1| osmolarity sensor protein envZ [Escherichia coli RN587/1]
          Length = 447

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 232 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 291

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 292 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 349

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 350 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 409

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 410 VDNHNGMLELGTSERGGLSIRAWLP 434


>gi|302340016|ref|YP_003805222.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
 gi|301637201|gb|ADK82628.1| PAS/PAC sensor hybrid histidine kinase [Spirochaeta smaragdinae DSM
           11293]
          Length = 632

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 61/238 (25%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLS 56
           M + +   +S         ++L + + H++ +P+  I   + LL     +   ++ + + 
Sbjct: 254 MQQALEVGISREKELNNKKSMLMANVSHELRTPLNGILGFVSLLQNRVKDPIELEYLEMI 313

Query: 57  SMSAIIRLKFM--------------RLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV 102
             S    L  +                   +      +  L  + +       +  +V V
Sbjct: 314 RHSGEKLLDIIESLLTLSSIERRKNDDTQRHFNIDHLVRSLVSMYESDGRNERLQYKVVV 373

Query: 103 SWTGEKIDLSRE-RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
               +++    +  + IL  L   A      G          K   I      G      
Sbjct: 374 DERLKRLMGDGDAVSHILNQLLSNASKFSESGEISCKVSAQKKQMVIIL-NDQGIGIPKE 432

Query: 162 E---KFTQIVDGNV--ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E    F +          T     I    V          +  E        ++  L 
Sbjct: 433 EQDKVFDRFYQCEQPITRTYGGIGIGLSIVKEEVDSLGGTIELESEYGVGTKVTVKLP 490


>gi|292491542|ref|YP_003526981.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
 gi|291580137|gb|ADE14594.1| PAS sensor protein [Nitrosococcus halophilus Nc4]
          Length = 547

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 68/238 (28%), Gaps = 25/238 (10%)

Query: 1   MAKNICFNLSS-MDLVAL--LCSRICHDIISPIGAIHNSLEL----LDEVGIEDEVMQ-- 51
           +AK     L+    L  L  + + I H++  P+GAI    ++    L+    E + ++  
Sbjct: 300 LAKQRLLELAHISRLSTLGEMAAEIAHELNQPLGAITTYSDICLRTLEPHSPESQPLRDI 359

Query: 52  ------LIRLSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIE-DFIAVDKRVQVSW 104
                     +         F+R        V+    + +   +++ +    +  ++++ 
Sbjct: 360 LEEIAMQAERAGKIIRHLRNFVRKKEQQRVPVEINELVREAVNIMQVEARWQNIAIELAL 419

Query: 105 TGEKIDLSRERAKILLNLF---MVAHASLPRGGKV-----TISVQDSKNENIFSLKINGN 156
                 ++ +   +   L      A  ++             ++   +      ++  G 
Sbjct: 420 QTPLPSVTADNLLLQQVLLNLVRNAFDAMITAQYTERKLKIQTLWVGETAIEVLVQDTGP 479

Query: 157 LARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                    +I +    +  +   +       +   +  +L               L 
Sbjct: 480 GLSDN-LKQKIFEPFFTTKQEGMGMGLSICQSIIEAHSGQLWATSNGHRGTTFQFRLP 536


>gi|228993267|ref|ZP_04153183.1| hypothetical protein bpmyx0001_39990 [Bacillus pseudomycoides DSM
           12442]
 gi|228766335|gb|EEM14978.1| hypothetical protein bpmyx0001_39990 [Bacillus pseudomycoides DSM
           12442]
          Length = 311

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 61/220 (27%), Gaps = 22/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSSMSAIIRLKFMRL--- 69
           + S I HD+ +P+  I    E+L+            +++ + L ++  +  +        
Sbjct: 89  MLSNISHDLKTPLTVILGYTEMLNVDKTISEEERQVLLEKVHLKTLEVMELIHKFFDLAK 148

Query: 70  ------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERA---KILL 120
                 A   T    + +    I    +        V +    + +          ++L 
Sbjct: 149 LESGDKAVEMTKVNMNEVCREKILTFYDLVTTKGFEVHIDIPEKNVYALGNTEVLGRVLN 208

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVEST-- 175
           NL   A A    G  + I+++D        +   G           F ++          
Sbjct: 209 NLISNAIAYGYDGKTLGITLRDDDRCVYVDVWDCGKGIDESHIDKVFERMYTLEDSRNRL 268

Query: 176 IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
                +       L       +          V + +L+K
Sbjct: 269 YQGSGLGLTITKRLVEALGGEIHLSSTPYKKTVFTIVLKK 308


>gi|229078308|ref|ZP_04210872.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
 gi|228704983|gb|EEL57405.1| hypothetical protein bcere0023_9790 [Bacillus cereus Rock4-2]
          Length = 883

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 61/250 (24%), Gaps = 36/250 (14%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIED---EVMQLIRLSS 57
           + +     L S    +   + + H++ +P+ +I    E+L E    +   + ++L  +  
Sbjct: 469 LEEKASELLRSSKYKSEFLANMSHELRTPLNSILLLSEMLRENHDNNLSDDEIELATVIH 528

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSW------------- 104
            S    L  +      +      + +      I D  A   +  +               
Sbjct: 529 SSGKDLLTLINDILDLSKVEAGKLDIIFEATNISDMAANMHQNFLHIAAQKNVEFTIEDS 588

Query: 105 ---TGEKIDLSRERAKILLNLFMVAHASLPR------------GGKVTISVQDSKNENIF 149
                     ++   +I+ NL   A     +                      SK+    
Sbjct: 589 DTIPDLFYTDAKRIEQIIKNLLSNAFKFTEKGSVSLHFDSIETSNLSHDMQSISKDWITI 648

Query: 150 SLKINGNLARFPEKFTQIV-----DGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDD 204
           S+K  G      +           DG          +        A      +  E    
Sbjct: 649 SVKDTGIGIAKEQHQLIFEAFQQADGATIRKYGGTGLGLSICKEFARLLGGWITLESNVG 708

Query: 205 HNVVLSALLE 214
                +  + 
Sbjct: 709 EGSTFTVYIP 718


>gi|262197212|ref|YP_003268421.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
 gi|262080559|gb|ACY16528.1| integral membrane sensor hybrid histidine kinase [Haliangium
           ochraceum DSM 14365]
          Length = 835

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSA 60
           +        ++    +   + + H+I +P+  +    ELL    +  E  +     + SA
Sbjct: 262 LEDEAREARATAQAKSEFLATMSHEIRTPLSGVIGMSELLLGGRLSGEQREFAETLNTSA 321

Query: 61  IIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQV-----SW 104
                                       D      D+ Q++       +   +     + 
Sbjct: 322 EALLSLINDILDFSKFESGHLELEEVPFDLQALTEDVVQILGSRARKKRIDLIARYDNNL 381

Query: 105 TGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN----ENIFSLKINGNLARF 160
               +       +ILLNL   A     RG  +     +  +       F ++  G     
Sbjct: 382 PRFFVGDPGRIRQILLNLVGNAVKFTERGHVLLAVHHNGDSDDKIRLHFEVEDTGIGIPE 441

Query: 161 ---PEKFTQIVD--GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              P  F + +              +       L      ++    +         LL 
Sbjct: 442 NSLPHIFDRFIQVTSGEARRFGGTGLGLAISRQLVERMSGQISVSSVLGKGSTFRFLLP 500


>gi|218697087|ref|YP_002404754.1| osmolarity sensor protein [Escherichia coli 55989]
 gi|218353819|emb|CAV00170.1| sensory histidine kinase in two-component regulatory system with
           OmpR [Escherichia coli 55989]
          Length = 450

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 63/205 (30%), Gaps = 8/205 (3%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVG---IEDEVMQLIRLSSMSAIIRLKFMRLAFG 72
            LL + + HD+ +P+  I  + E++ E      E     +   +++              
Sbjct: 235 TLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFIDYLRTGQEM 294

Query: 73  YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPR 132
                D    LG++      +    +      + E         + + N+ + A      
Sbjct: 295 PMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHPLSIKRAVANMVVNAARY--G 352

Query: 133 GGKVTISVQDSKNENIFSLKINGNLA---RFPEKFTQIVDGNVESTIDSHDIQFYYVILL 189
            G + +S     N   F ++ +G      +    F   V G+   TI    +    V  +
Sbjct: 353 NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTISGTGLGLAIVQRI 412

Query: 190 AHENKIRLLPEIIDDHNVVLSALLE 214
              +   L     +   + + A L 
Sbjct: 413 VDNHNGMLELGTSERGGLSIRAWLP 437


>gi|193212325|ref|YP_001998278.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
 gi|193085802|gb|ACF11078.1| multi-sensor signal transduction histidine kinase [Chlorobaculum
           parvum NCIB 8327]
          Length = 596

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 23/220 (10%), Positives = 57/220 (25%), Gaps = 23/220 (10%)

Query: 18  LCSRICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKF------ 66
             S + H++ +P+ +I    E L     ++       +++I+  S      +        
Sbjct: 367 FVSSVSHELRTPLASIKGYTETLLEGAVNDPEHATAFLRIIQQESEQLTALINDVLDLSR 426

Query: 67  --MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQ----VSWTGEKIDLSRERAKILL 120
                       VD    L     + E   +                 +        ++ 
Sbjct: 427 IESGKIIYNFEPVDVKPALEKTMALFEPAASRKGVRIELNVPDGLPPVLADRNYFDIVMR 486

Query: 121 NLFMVAHASLP-RGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI 176
           NL   A   +    G+V +S   +       +  NG      +    F +    +   + 
Sbjct: 487 NLIDNAVKYVDANRGRVRVSACKADQNVAIEVSDNGIGIPQADLKRIFERFYRVDKARSR 546

Query: 177 D--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           +     +    V  +   +K  +      +     +    
Sbjct: 547 ELAGTGLGLSIVKHILLAHKGNVEVRSKTNSGSTFTVTFP 586


>gi|170761590|ref|YP_001786431.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
 gi|169408579|gb|ACA56990.1| sensor histidine kinase [Clostridium botulinum A3 str. Loch Maree]
          Length = 451

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 73/238 (30%), Gaps = 23/238 (9%)

Query: 1   MAKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLDEV--GIEDEVMQLIR 54
           + K++      +     +   L S I H+I +P+  + N+LE + +    + +E +  + 
Sbjct: 213 LRKSVNILAEKLKHQDSIRRRLVSDISHEIRTPLNVLENNLEAMIDGVLPVTEERLNCLN 272

Query: 55  LSSMSAIIRLKFMRL-----------AFGYTGSVDSLIGLG--DIEQVIEDFIAVDKRVQ 101
              +     L  + +            F      + +  +            I +   ++
Sbjct: 273 EEVVRFGRLLNNLNVLKEFESESIKLNFQKIFLDELIADICSDFYAIAENKNIKLQYHIE 332

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFP 161
                          ++ +NL   A      GG+V I +  S    +  +K NG   +  
Sbjct: 333 NHEDYSITGDRDRLKQVFINLLSNALKFTEDGGEVLIKIYKSDKNIVVEVKDNGVGIKKE 392

Query: 162 E---KFTQIVDGNVEST-IDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
           +    F ++  G+        + I    V  +   +   +  E  +           +
Sbjct: 393 DLPFIFERLYRGDKSRHQFKGNGIGLTIVKNILQLHYASIDLESEEGEGTTFKVYFHR 450


>gi|167552882|ref|ZP_02346633.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|168820173|ref|ZP_02832173.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194444856|ref|YP_002039942.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|198242456|ref|YP_002214685.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|207856161|ref|YP_002242812.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|194403519|gb|ACF63741.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|197936972|gb|ACH74305.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|205322558|gb|EDZ10397.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA29]
 gi|205343105|gb|EDZ29869.1| sensor protein kdpD [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|206707964|emb|CAR32253.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|320084971|emb|CBY94760.1| two-component regulatory protein sensor kinase KdpD [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 894

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|119509031|ref|ZP_01628182.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
 gi|119466197|gb|EAW47083.1| two-component hybrid sensor and regulator [Nodularia spumigena
            CCY9414]
          Length = 1045

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 63/237 (26%), Gaps = 24/237 (10%)

Query: 2    AKNICFNLSSMD----LVALLCSRICHDIISPIGAIHNSLELLD------EVGIEDEVMQ 51
             + I   L        L +   S   H+  +P+  I +S  +L       +   + + ++
Sbjct: 799  QQEIYKILEREKELNQLKSRFISMTSHEFRTPLAVISSSAGILKEFSQKLDEEKKQKHLE 858

Query: 52   LIRLSSMSAIIRLK-----------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRV 100
             I          L             +         V+    L    Q+      +    
Sbjct: 859  CIITYVKHTTQLLDEILLISKAEAGKLAFEPKPLDLVEFCQKLTSEMQLSTQNNTIIFSS 918

Query: 101  QVSWTGEKIDLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARF 160
                    +   +   +IL+NL   A         V   +Q ++   IFS++  G     
Sbjct: 919  NTKTEVIALVDKKLLRQILINLLSNAVKYSQHNSSVKFDLQITEQSIIFSIEDQGIGIPQ 978

Query: 161  PE---KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             +    F          +I    +    V      +  ++     +      + ++ 
Sbjct: 979  ADKTQLFEAFHRATNVGSISGTGLGLTIVKNCVDLHGGKVTVVSQEGIGTKFTVIIP 1035


>gi|116053129|ref|YP_793450.1| putative two-component sensor [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588350|gb|ABJ14365.1| putative sensor histidine kinase/response regulator [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 770

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 2   AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
           AK+           +   + + H+I +P+  I    ELL E  + +   Q +R  + +  
Sbjct: 268 AKDQAEAADRAK--SRFLATMSHEIRTPLNGILGMAELLREASLGERDRQRLRALATAGE 325

Query: 62  IRLKFMRLAFGYTGSVDSLIGLGDIEQ------------VIEDFIAVDKRVQVSWTGEKI 109
             L  +     +    ++      ++             +         R+ +    +  
Sbjct: 326 GLLAILNEVLHFARLEEAADVPEAVDFSLRSLLEDVLTLLEPRARENATRLDLWLDPQVH 385

Query: 110 DLSRERAKILLNLFMVAHASLPRGGKVTISVQDSKN--------ENIFSLKINGNLARFP 161
           D  R   + L  +      +  +  +        +             S+  +G      
Sbjct: 386 DGHRGAEQFLRQVLTNLLGNAVKFTEAGEVRVRVERLARSAGSERLRLSVADDGIGI-PE 444

Query: 162 EKFTQIVDGNV------ESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
           E   +I +                 +       L      R+  E            +E
Sbjct: 445 EMRERIFERFTQGGDAVTRRYGGTGLGLAISKRLVEALGGRIGVESRVGQGSTFWFEIE 503


>gi|66043988|ref|YP_233829.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254695|gb|AAY35791.1| ATP-binding region, ATPase-like:Histidine kinase A, N-terminal
           [Pseudomonas syringae pv. syringae B728a]
 gi|330971946|gb|EGH72012.1| type IV pilus sensor protein PilS [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 530

 Score =  107 bits (267), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 64/228 (28%), Gaps = 19/228 (8%)

Query: 3   KNICFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELL-DEVGIEDEVMQLIRLSSMS 59
             I      + L AL  L + I H+I +P+GA+ ++ +LL +   +     +L ++    
Sbjct: 296 SQIAHQAQQLKLAALGRLTAGIAHEIRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQ 355

Query: 60  AIIRLKF-------MRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLS 112
           +    +         R        +D    L           A ++++ V  +   +   
Sbjct: 356 SGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSAAPNQKIHVDISPGTLTTR 415

Query: 113 RERAKILLNLFM---VAHASLPRGG-----KVTISVQDSKNENIFSLKINGNLARFPEKF 164
            +  ++   +            +        + +      +     +  +G         
Sbjct: 416 MDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNDQKSDLPTLEVLDDGPGVSEQHLS 475

Query: 165 TQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSAL 212
            ++ +    +      +  Y    L   N+  L           L   
Sbjct: 476 -KMFEPFFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRIT 522


>gi|332976591|gb|EGK13432.1| sensor histidine kinase [Desmospora sp. 8437]
          Length = 407

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 19/218 (8%), Positives = 55/218 (25%), Gaps = 22/218 (10%)

Query: 17  LLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIR-----LSSMSAIIRLK------ 65
              +   H++ +P+  I    ELL +   +    +          +      +       
Sbjct: 185 QFVADASHELRTPLTVIQTRTELLLQHPHQTVQEKSDDISAIYRETRRVRRLVNDLLTLA 244

Query: 66  -----FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRERAKILL 120
                 + L        + L  + D    + +   +  +  +              ++L+
Sbjct: 245 RSDSNQLELNRQTFDVSELLKEVADHFTELTELEGITLQTGIESNLLCNGDRERIHQLLV 304

Query: 121 NLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE---KFTQIVDGNVESTI- 176
            L   A      GG +  + +    +    +K  G      +    F +   G+      
Sbjct: 305 ILLDNAVKFTSSGGTIHFTCRKKGPQLFIEVKDTGTGISGKDLPRIFDRFYRGDRARGRT 364

Query: 177 -DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                +       +  ++   +  +         +  L
Sbjct: 365 DGGTGLGLSIAKWIVDKHGGNISVKSNS-EGTTFTVKL 401


>gi|327538858|gb|EGF25501.1| sensory box histidine kinase [Rhodopirellula baltica WH47]
          Length = 417

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 22/234 (9%)

Query: 3   KNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLD-----EVGIEDEVMQLIRLSS 57
           ++        ++     + + H++ +P+ AI    E ++     +       MQ I    
Sbjct: 173 RDETEARRVEEMRREFIANVSHELKTPLAAIKGYAETVELAVQDDPDAALHFMQQIMSQC 232

Query: 58  MSAIIRLKFMRL--------AFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKI 109
           +     +  M          A  +  SV     + D  +  E   A +    +       
Sbjct: 233 LRLERLVHEMMQLARAQAGPANLHLSSVSLSEIVSDAIRTYEPVAAANGLDLIQEVPSGE 292

Query: 110 DLSRERAKILLNLFMVAH----ASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE--- 162
                  +  L +            P GG++ +S+ +  ++    ++  G    + E   
Sbjct: 293 AKIIADREATLTIANNLIGNALRYTPSGGEIRVSIVEQTDQWALVVEDTGVGIPYSEQQR 352

Query: 163 KFTQIVDGNVESTID--SHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
            F +   G+           +    V  L    +  +               L 
Sbjct: 353 IFERFYRGSRNEESSTSGTGLGLAIVKHLTQAQQGDVSVTSTPGEGSRFCVCLP 406


>gi|322615849|gb|EFY12767.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322634917|gb|EFY31647.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322636555|gb|EFY33259.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322641808|gb|EFY38440.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647796|gb|EFY44276.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322652629|gb|EFY48978.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658437|gb|EFY54700.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664960|gb|EFY61151.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322670542|gb|EFY66675.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675282|gb|EFY71358.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322679708|gb|EFY75749.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684816|gb|EFY80815.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193113|gb|EFZ78333.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323200585|gb|EFZ85660.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323202257|gb|EFZ87305.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323205476|gb|EFZ90442.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323213485|gb|EFZ98278.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323215319|gb|EGA00064.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323220232|gb|EGA04688.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323224248|gb|EGA08538.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323231030|gb|EGA15146.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323234137|gb|EGA18226.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323238168|gb|EGA22226.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323247373|gb|EGA31332.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323251361|gb|EGA35233.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323258500|gb|EGA42172.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263123|gb|EGA46663.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264726|gb|EGA48228.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323272227|gb|EGA55639.1| sensor protein KdpD [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 894

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 21/233 (9%)

Query: 2   AKNICFNLSSMDLV---ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM 58
           A      L+S       ALL + + HD+ +P+  +    E+L             + S +
Sbjct: 649 ASEEQARLASERESIRNALLAA-LSHDLRTPLTVLFGQAEILTLDLASAGSPHARQASEI 707

Query: 59  SAIIR-----------LKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGE 107
              I            +  ++            +       +      +   + +S   +
Sbjct: 708 RQHILNTTRLVNNLLDMARIQSGGFNLKKEWLTLEEVVGSALQMLEPGLLHPITLSLPQQ 767

Query: 108 KIDLSRE---RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPE-- 162
              +  +     ++L+NL   A         + I      +     +  NG      +  
Sbjct: 768 LTLIHVDGPLFERVLINLLENAVKYAGPQASIGIDAAVKDDRLQLDVWDNGPGIPAGQEQ 827

Query: 163 -KFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
             F +   GN ES +    +       +   +   L               L 
Sbjct: 828 KIFDKFARGNKESAVPGVGLGLAICHAIVEVHGGTLTAYNRPQGGACFRVTLP 880


>gi|320104791|ref|YP_004180382.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
 gi|319752073|gb|ADV63833.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
           43644]
          Length = 973

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 62/220 (28%), Gaps = 21/220 (9%)

Query: 16  ALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
           +   + + H+I +P+ +I    ++L+   +  + +   R +  +A   L  +        
Sbjct: 388 SEFLASMSHEIRTPMTSILGHADILNLPDLTPQRLAEARGAIQAAGRHLLRIINDILDLA 447

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS-----------------WTGEKIDLSRERAKI 118
            +++     +I       +A +    +                     +         ++
Sbjct: 448 KIEAGKLPMEILPCDPWTLAREVVAGLRINATRRELALTLEAAGPLPKQIQTDPNRLRQV 507

Query: 119 LLNLFMVAHASLPRG-GKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVES 174
           L NL   A     +G  ++ +S   S     F +   G      +    FT         
Sbjct: 508 LYNLVGNAIKFTEKGGVRLIVSFDPSACRLSFDVIDTGVGMTPEQVGKLFTPFYQAERTH 567

Query: 175 TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                 +       LA      +  +       V S L+ 
Sbjct: 568 NAGGTGLGLVISKRLAERLGGTIKVQSQRGRGSVFSVLIP 607


>gi|317029553|ref|XP_001391885.2| histidine kinase J7 [Aspergillus niger CBS 513.88]
          Length = 1308

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/243 (10%), Positives = 59/243 (24%), Gaps = 33/243 (13%)

Query: 3   KNICFNLSSMDLV----ALLCSRICHDIISPIGAIHNSLEL-LDEVGIEDEVMQLIRLSS 57
           +       + +L     +   + + H+I +P+  I    +L LD   ++    +++ +  
Sbjct: 710 QRNTAAREAAELANRTKSEFLANMSHEIRTPMNGIIGMTQLTLDTDDLKPYTREMLNVVH 769

Query: 58  MSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVD----------------KRVQ 101
             A   L  +      +    + + +  I   +   +                    +V 
Sbjct: 770 NLANSLLTIIDDILDISKIEANRMVIESIPFTVRGTVFNALKTLAVKANEKFLSLTYQVD 829

Query: 102 VSWTGEKIDLSRERAKILLNLFMVAHASLPR-------GGKVTISVQDSKNENIFSLKIN 154
            +     I       +I+LNL   A                        +    FS+   
Sbjct: 830 NTVPDYVIGDPFRLRQIILNLVGNAIKFTEHGEVKLTICKSDREQCAADEYAFEFSVSDT 889

Query: 155 GNLARFP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVL 209
           G               Q  DG+         +       L +     +       H    
Sbjct: 890 GIGIEEDKLDLIFDTFQQADGSTTRRFGGTGLGLSISKRLVNLMGGDVWVTSEYGHGSTF 949

Query: 210 SAL 212
              
Sbjct: 950 HFT 952


>gi|283853869|ref|ZP_06371085.1| histidine kinase [Desulfovibrio sp. FW1012B]
 gi|283570744|gb|EFC18788.1| histidine kinase [Desulfovibrio sp. FW1012B]
          Length = 471

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 68/212 (32%), Gaps = 18/212 (8%)

Query: 21  RICHDIISPIGAIHNSLELL-----DEVGIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTG 75
            + HD+ +P      ++E+      +   + + ++     +     +    M ++   TG
Sbjct: 250 NVAHDLRTPATRTLAAVEMAAATKNEPEELREALLDCAEETRRMVSMLDILMDISEAETG 309

Query: 76  SVDSLIGLGDIEQVIEDFIAVDKRVQVS----------WTGEKIDLSRERAKILLNLFMV 125
           ++   +G  D+  ++E+ + + + V                  +  +    ++L NL   
Sbjct: 310 AMRLHLGPTDMAALMEEAVELYQYVAEEKGVTLTVAPPDRLPVVADADRLRQVLANLLDN 369

Query: 126 AHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK---FTQIVDGNVESTIDSHDIQ 182
           A    P GG V ++     N     +   G      +    F ++   +   +     + 
Sbjct: 370 AVKYTPAGGHVEVAATRLGNTVSVCVADTGEGIVAEDIPRIFDRLYRADKSRSQRGLGLG 429

Query: 183 FYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
              V  + + +   +  +         +  L 
Sbjct: 430 LSLVRAVLYAHGGTIYVQSEPGAGSRFTFTLP 461


>gi|228990906|ref|ZP_04150870.1| hypothetical protein bpmyx0001_16670 [Bacillus pseudomycoides DSM
           12442]
 gi|228768843|gb|EEM17442.1| hypothetical protein bpmyx0001_16670 [Bacillus pseudomycoides DSM
           12442]
          Length = 323

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 69/236 (29%), Gaps = 22/236 (9%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDE------VGIEDEVMQLIR 54
           + ++I     S ++   +   I HD+ +P+ ++   ++L++          +  V  L R
Sbjct: 84  LKESIEKEKQSQEMKNEMIHNISHDLRTPVTSLIGYVDLVESKLHSNIEECDQYVAVLKR 143

Query: 55  LSSMSAIIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDLSRE 114
            S          +               + +++ +IE  +                  ++
Sbjct: 144 KSDELKNQIDDLLEYCHINYKERQLHKEIVEVKPLIEQIMIDFVPQLDEEKMHFDIECKQ 203

Query: 115 RAK----------ILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEK- 163
             +          ++ N+   +      G K+ I V          +K  G      +  
Sbjct: 204 TVQIEVDIKLIIRLMQNVISNSILYGKSGKKIVIEVLVENVNAQIKIKNYGPRISDEDIP 263

Query: 164 --FTQIVDGNVES--TIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215
             F +   G            +       +AH ++  L  +   +     + +L +
Sbjct: 264 YVFEKFYRGEKSRNAHTGGKGMGLAIAKSIAHIHEGDLTVDSNKEE-TTFTIILPR 318


>gi|153868800|ref|ZP_01998541.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
 gi|152074617|gb|EDN71454.1| sensory box histidine kinase/response regulator [Beggiatoa sp. PS]
          Length = 1054

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 60/239 (25%), Gaps = 29/239 (12%)

Query: 2    AKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSMSAI 61
            AK    + +     +   + + H+I +P+ A+    ++L     + +    +     +  
Sbjct: 777  AKEQADSANRAK--SEFLANMSHEIRTPMNAVIGFSDILASKVTDKKQKTYLDSIQTAGK 834

Query: 62   IRLK--------------FMRLAFGYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVS--WT 105
              L                + + +           L  I  +      ++  ++      
Sbjct: 835  SLLTLINDILDLSKIEAGRLDIQYEPVNLQLIFTELQQIFSLKMAEKNLEFILETDETLP 894

Query: 106  GEKIDLSRERAKILLNLFMVAHASLP------RGGKVTISVQDSKNENIFSLKINGNLAR 159
                       ++LLNL   A              K +     S+ + I +++ +G    
Sbjct: 895  PVLFLDETRLRQMLLNLMGNAIKFTDSGYIKLCANKGSTENDHSQVDLILAVEDSGIGIP 954

Query: 160  FP-----EKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALL 213
                    +  +  DG          +       L       +  E            L
Sbjct: 955  AEQQALIFESFRQQDGQSTRQYGGTGLGLAITKRLVEMMNGHITVESHPGKGSRFEIAL 1013


>gi|154500004|ref|ZP_02038042.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC
           29799]
 gi|150271602|gb|EDM98859.1| hypothetical protein BACCAP_03661 [Bacteroides capillosus ATCC
           29799]
          Length = 821

 Score =  107 bits (267), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 55/239 (23%), Gaps = 25/239 (10%)

Query: 1   MAKNICFNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEVGIEDEVMQLIRLSSM-- 58
           + + +     S    +   S + HD+ +P+ AI    +L  +   +   ++         
Sbjct: 432 LQEALEAAKKSTKAKSDFFSSMSHDMRTPLNAIIGFSQLAQKNSDDSGKVRDYMQKIEFS 491

Query: 59  ------SAIIRLKFMRLAFGYTGSVDSLIGLGDIE-----QVIEDFIAVDKRVQVSWTGE 107
                      L+  ++  G     +    L            E      KR        
Sbjct: 492 GKQLLALINDILELSKMEAGKNALNNQRFNLKKYVEEAADIFREQAEHQGKRFTADLDMH 551

Query: 108 KIDLSRERA---KILLNLFMVAHASLPR----GGKVTISVQDSKNENIFSLKINGNLARF 160
              +  +     +IL NL   +            ++        ++    ++  G     
Sbjct: 552 NEIVVGDEFKIGQILNNLLSNSLKYSNPGAEIHLEIRQFDFRRHSKYQIVVEDTGIGMSR 611

Query: 161 PEKFTQIVD-----GNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214
                             +      +    V  L  +    +  E         +  L 
Sbjct: 612 QFLEHLFDPYSRETCFTSAATVGTGLGMPIVKSLVQQMSGEISVESTLGKGSKFTVTLP 670


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.125    0.352 

Lambda     K      H
   0.267   0.0383    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,666,461,660
Number of Sequences: 14124377
Number of extensions: 78977524
Number of successful extensions: 399747
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 57985
Number of HSP's successfully gapped in prelim test: 7018
Number of HSP's that attempted gapping in prelim test: 242564
Number of HSP's gapped (non-prelim): 74695
length of query: 215
length of database: 4,842,793,630
effective HSP length: 133
effective length of query: 82
effective length of database: 2,964,251,489
effective search space: 243068622098
effective search space used: 243068622098
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 78 (34.8 bits)